Title: Publication-Ready Forest Plots with 'ggplot2'
Description: Transform model coefficients into flexible forest
plots using 'ggplot2'. Provides helpers to standardize
coefficient data from a range of modelling workflows and render
publication-ready forest plots with a consistent interface.
Author: Carson Richardson [aut, cre, cph]
Maintainer: Carson Richardson <carson.richardson@outlook.com>
Diff between ggforestplotR versions 0.1.1 dated 2026-04-22 and 0.2.0 dated 2026-05-19
DESCRIPTION | 6 MD5 | 56 - NEWS.md | 17 R/add_forest_table.R | 665 +++++++------ R/add_split_table.R | 835 +++++++++-------- R/as_forest_data.R | 208 ++-- R/ggforestplot.R | 574 ++++++----- R/tidy_forest_model.R | 53 - R/utils.R | 1206 +++++++++++++++---------- README.md | 176 +-- build/vignette.rds |binary inst/doc/ggforestplotR-get-started.R | 25 inst/doc/ggforestplotR-get-started.Rmd | 38 inst/doc/ggforestplotR-get-started.html | 62 - inst/doc/ggforestplotR-plot-customization.R | 34 inst/doc/ggforestplotR-plot-customization.Rmd | 49 - inst/doc/ggforestplotR-plot-customization.html | 258 ++--- man/add_forest_table.Rd | 67 + man/add_split_table.Rd | 50 - man/as_forest_data.Rd | 8 man/ggforestplot.Rd | 41 man/tidy_forest_model.Rd | 14 tests/testthat/Rplots.pdf |binary tests/testthat/test-as_forest_data.R | 44 tests/testthat/test-ggforestplot.R | 474 +++++++++ tests/testthat/test-table-contracts.R | 7 tests/testthat/test-tidy_forest_model.R | 40 vignettes/ggforestplotR-get-started.Rmd | 38 vignettes/ggforestplotR-plot-customization.Rmd | 49 - 29 files changed, 3165 insertions(+), 1929 deletions(-)
Title: Robust Data Analysis Through Monitoring and Dynamic
Visualization
Description: Provides interface to the 'MATLAB' toolbox 'Flexible Statistical Data Analysis
(FSDA)' which is comprehensive and computationally efficient
software package for robust statistics in regression, multivariate
and categorical data analysis. The current R version implements tools
for regression: (forward search, S- and MM-estimation, least trimmed
squares (LTS) and least median of squares (LMS)), for multivariate analysis
(forward search, S- and MM-estimation), for cluster analysis and cluster-wise regression.
The distinctive feature of our package is the possibility of
monitoring the statistics of interest as a function of breakdown point,
efficiency or subset size, depending on the estimator. This is
accompanied by a rich set of graphical features, such as dynamic
brushing, linking, particularly useful for exploratory data analysis.
Author: Valentin Todorov [aut, cre] ,
Emmanuele Sordini [aut],
Aldo Corbellini [ctb],
Francesca Torti [ctb],
Marco Riani [ctb],
Domenico Perrotta [ctb],
Andrea Cerioli [ctb]
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between fsdaR versions 0.9-0 dated 2023-12-05 and 0.9-1 dated 2026-05-19
ChangeLog | 8 DESCRIPTION | 14 MD5 | 87 ++- NAMESPACE | 4 R/datadoc.R | 14 R/fanplot.R | 113 ----- R/fsmult-methods.R | 3 R/fsrbase.R | 2 R/fsreg-methods.R | 6 R/fsreg.R | 2 R/fsrfan.R | 3 R/normBoxCox.R |only R/normYJ.R |only R/normYJpn.R |only R/resfwdplot.R | 3 R/s3objectsdoc.R | 123 +++++ R/score.R | 5 R/scoreyj.R |only R/scoreyjpn.R |only R/tclust-methods.R | 6 R/tclust.R | 4 R/tclustIC.R | 17 R/tclustICsol.R | 25 - R/tclustreg.R | 124 +++-- R/tclustregIC.R | 324 ++++++++++---- build/partial.rdb |binary build/vignette.rds |binary data/X.rda |binary data/fishery2003.rda |only inst/doc/fsdaR.R | 2 inst/doc/fsdaR.pdf |binary inst/tests/tfsreg.Rout.save | 12 inst/tests/tsomeplots.R | 1 inst/tests/tsomeplots.Rout.save | 43 + inst/tests/ttclust.Rout.save | 875 ++++++++++++++++++++++++++++++++++++++-- man/fanplot.Rd |only man/fishery2003.Rd |only man/loyalty.Rd | 3 man/normBoxCox.Rd |only man/normYJ.Rd |only man/normYJpn.Rd |only man/score.Rd | 5 man/score.object.Rd | 2 man/scoreYJ.Rd |only man/scoreYJ.object.Rd |only man/scoreYJpn.Rd |only man/scoreYJpn.object.Rd |only man/tclustIC.Rd | 23 - man/tclustfsda.object.Rd | 7 man/tclustreg.Rd | 50 +- man/tclustreg.object.Rd | 41 + man/tclustregIC.Rd | 385 +++++++++++------ 52 files changed, 1836 insertions(+), 500 deletions(-)
Title: Analysis of Visual Meteor Data
Description: Provides a suite of analytical functionalities to process and analyze
visual meteor observations from the Visual Meteor Database
of the International Meteor Organization <https://www.imo.net/>.
Author: Janko Richter [aut, cre]
Maintainer: Janko Richter <janko@richtej.de>
Diff between vismeteor versions 3.0.0 dated 2026-05-16 and 3.0.1 dated 2026-05-19
DESCRIPTION | 6 MD5 | 42 +-- NEWS.md | 29 ++ R/load_data.R | 131 ++++++++-- inst/doc/select_knots.R | 17 - inst/doc/select_knots.Rmd | 19 - inst/doc/select_knots.html | 65 ++-- inst/doc/vismeteor.R | 3 inst/doc/vismeteor.Rmd | 5 inst/doc/vismeteor.html | 21 - inst/doc/vmgeom.html | 4 inst/doc/vmideal.html | 4 man/load_vmdb.Rd | 30 +- tests/testthat/fixtures/empty/example.com/api/v1/magnitudes.json | 2 tests/testthat/fixtures/empty/example.com/api/v1/rates.json | 2 tests/testthat/fixtures/full/example.com/api/v1/magnitudes.json | 6 tests/testthat/fixtures/full/example.com/api/v1/rates.json | 9 tests/testthat/fixtures/sporadic_mixed |only tests/testthat/fixtures/sporadic_mixed_magn |only tests/testthat/fixtures/sporadic_only |only tests/testthat/fixtures/sporadic_only_magn |only tests/testthat/test_load_vmdb.R | 129 +++++++++ vignettes/select_knots.Rmd | 19 - vignettes/vismeteor.Rmd | 5 24 files changed, 402 insertions(+), 146 deletions(-)
Title: Data from the Ecuador Truth Commission
Description: Provides access to data collected by the Ecuadorian Truth Commission.
Allows users to extract and analyze systematized information for human rights
research in Ecuador. The package contains datasets documenting human rights
violations from 1984-2008, including victim information, violation types,
perpetrators, and geographic distribution.
Author: Adriana Robles [aut] ,
Javier Borja [aut, cre]
Maintainer: Javier Borja <javier@demografiando.pro>
Diff between verdadecu versions 1.0.0 dated 2025-09-18 and 1.0.1 dated 2026-05-19
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ inst/CITATION | 4 ++-- inst/doc/verdadecu.Rmd | 1 + inst/doc/verdadecu.html | 6 +++--- vignettes/verdadecu.Rmd | 1 + 7 files changed, 20 insertions(+), 14 deletions(-)
Title: Descriptive Statistics, Summary Tables, and Data Management
Tools
Description: Provides tabulation, descriptive-summary, and
variable-inspection tools for applied data analysis. Frequency
tables and cross-tabulations with contingency-table association
measures (Cramer's V, Phi, Goodman-Kruskal Gamma, Kendall's
Tau-b, Somers' D, and others); categorical and continuous
summary tables; regression coefficient tables for one or more
'lm' or 'glm' fits side by side; and outcome-by-group
comparison tables from linear models with optional additive
covariate adjustment. All table outputs follow APA conventions
and expose 'broom'-compatible 'tidy()' / 'glance()' methods
for downstream pipelines. Helpers cover interactive codebooks,
variable-label extraction, clipboard export, and row-wise
descriptive summaries.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.11.0 dated 2026-05-04 and 0.12.0 dated 2026-05-19
DESCRIPTION | 38 LICENSE | 4 MD5 | 243 NAMESPACE | 11 NEWS.md | 111 R/abort.R | 372 + R/assoc.R | 158 R/code_book-filename.R | 13 R/code_book-validation.R | 8 R/code_book.R | 40 R/copy_clipboard.R | 57 R/count_n.R | 111 R/cross_tab.R | 180 R/data.R | 39 R/freq.R | 70 R/freq_print.R | 66 R/glm_compute.R |only R/label_from_names.R | 50 R/lm_compute.R |only R/lm_helpers.R |only R/mean_n.R | 20 R/regression_align.R |only R/regression_ame.R |only R/regression_broom.R |only R/regression_dispatch.R |only R/regression_extract.R |only R/regression_nested.R |only R/regression_partial.R |only R/regression_render.R |only R/regression_structured.R |only R/regression_titlefooter.R |only R/regression_transform.R |only R/regression_validate.R |only R/spicy-package.R | 93 R/spicy_tables.R | 53 R/standardize_glm.R |only R/standardize_lm.R |only R/sum_n.R | 35 R/table_categorical.R | 108 R/table_categorical_print.R | 3 R/table_continuous.R | 140 R/table_continuous_lm.R | 5187 +++++++-------------- R/table_continuous_lm_print.R | 48 R/table_continuous_lm_render.R |only R/table_continuous_print.R | 19 R/table_helpers.R | 438 + R/table_regression.R |only R/tables_ascii.R | 1332 +++-- R/varlist-values.R | 17 R/varlist.R | 46 README.md | 54 build/vignette.rds |binary inst/CITATION | 21 inst/WORDLIST |only inst/citation.bib | 15 inst/doc/association-measures.Rmd | 16 inst/doc/association-measures.html | 19 inst/doc/frequency-tables.Rmd | 11 inst/doc/frequency-tables.html | 10 inst/doc/spicy.Rmd | 23 inst/doc/spicy.html | 19 inst/doc/summary-tables-reporting.R | 15 inst/doc/summary-tables-reporting.Rmd | 24 inst/doc/summary-tables-reporting.html | 105 inst/doc/table-categorical.R | 15 inst/doc/table-categorical.Rmd | 20 inst/doc/table-categorical.html | 8 inst/doc/table-continuous-lm.R | 35 inst/doc/table-continuous-lm.Rmd | 834 +-- inst/doc/table-continuous-lm.html | 547 +- inst/doc/table-continuous.R | 16 inst/doc/table-continuous.Rmd | 27 inst/doc/table-continuous.html | 149 inst/doc/table-regression.R |only inst/doc/table-regression.Rmd |only inst/doc/table-regression.html |only inst/doc/variable-exploration.Rmd | 20 inst/doc/variable-exploration.html | 18 man/as.data.frame.spicy_regression_table.Rd |only man/as_structured.Rd |only man/assoc_measures.Rd | 21 man/build_ascii_table.Rd | 61 man/code_book.Rd | 37 man/copy_clipboard.Rd | 59 man/count_n.Rd | 102 man/cross_tab.Rd | 51 man/freq.Rd | 55 man/goodman_kruskal_tau.Rd | 7 man/kendall_tau_c.Rd | 6 man/label_from_names.Rd | 43 man/mean_n.Rd | 20 man/phi.Rd | 14 man/print.spicy_freq_table.Rd | 70 man/sochealth.Rd | 37 man/somers_d.Rd | 16 man/spicy-package.Rd | 97 man/spicy_print_table.Rd | 57 man/spicy_tables.Rd | 64 man/sum_n.Rd | 20 man/table_categorical.Rd | 64 man/table_continuous.Rd | 120 man/table_continuous_lm.Rd | 1930 ++++--- man/table_regression.Rd |only man/tidy.spicy_categorical_table.Rd | 3 man/tidy.spicy_continuous_lm_table.Rd | 15 man/tidy.spicy_continuous_table.Rd | 17 man/tidy.spicy_regression_table.Rd |only man/uncertainty_coef.Rd | 18 man/varlist.Rd | 40 man/yule_q.Rd | 14 tests/spelling.R |only tests/testthat/_snaps/snapshots.md | 28 tests/testthat/_snaps/table_regression.md |only tests/testthat/test-assoc.R | 65 tests/testthat/test-code_book.R | 8 tests/testthat/test-count_n.R | 13 tests/testthat/test-cross_tab.R | 82 tests/testthat/test-lm_helpers.R |only tests/testthat/test-regression_align.R |only tests/testthat/test-regression_ame_satterthwaite.R |only tests/testthat/test-regression_broom.R |only tests/testthat/test-regression_coverage_push.R |only tests/testthat/test-regression_dispatch_engines.R |only tests/testthat/test-regression_glm.R |only tests/testthat/test-regression_nested.R |only tests/testthat/test-regression_render.R |only tests/testthat/test-regression_structured.R |only tests/testthat/test-regression_titlefooter.R |only tests/testthat/test-regression_transform.R |only tests/testthat/test-regression_validate_branches.R |only tests/testthat/test-snapshots.R | 31 tests/testthat/test-table_categorical.R | 24 tests/testthat/test-table_continuous.R | 2 tests/testthat/test-table_continuous_lm.R | 54 tests/testthat/test-table_regression.R |only vignettes/_pkgdown-helpers.R |only vignettes/association-measures.Rmd | 16 vignettes/frequency-tables.Rmd | 11 vignettes/spicy.Rmd | 23 vignettes/summary-tables-reporting.Rmd | 24 vignettes/table-categorical.Rmd | 20 vignettes/table-continuous-lm.Rmd | 834 +-- vignettes/table-continuous.Rmd | 27 vignettes/table-regression.Rmd |only vignettes/variable-exploration.Rmd | 20 145 files changed, 7863 insertions(+), 7608 deletions(-)
Title: Open Working Directory
Description: Open the current working directory (or a given directory path) in your computer's file manager.
Author: Benjamin G. Feakins [aut, cre] ,
Benjamin J. Cairns [ctb] ,
University of Oxford [cph, sht]
Maintainer: Benjamin G. Feakins <feakster@posteo.eu>
Diff between owd versions 1.0.6 dated 2020-08-05 and 1.0-7 dated 2026-05-19
DESCRIPTION | 25 ++++++++++++++----------- MD5 | 8 ++++---- inst/CITATION | 4 ++-- inst/NEWS.Rd | 6 ++++++ man/owd.Rd | 2 +- 5 files changed, 27 insertions(+), 18 deletions(-)
Title: Classify Open Street Map Features
Description: Classify Open Street Map (OSM) features into meaningful functional
or analytical categories. Designed for OSM PBF files, e.g. from <https://download.geofabrik.de/>
imported as spatial data frames. A classification consists of a list of categories that are related to
certain OSM tags and values. Given a layer from an OSM PBF file and a classification, the main
osm_classify() function returns a classification data table giving, for each feature, the primary and
alternative categories (if there is overlap) assigned, and the tag(s) and value(s) matched on.
The package also contains a classification of OSM features by economic function/significance,
following Krantz (2023) <https://www.ssrn.com/abstract=4537867>.
Author: Sebastian Krantz [aut, cre]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between osmclass versions 0.1.4 dated 2026-05-02 and 0.1.5 dated 2026-05-19
DESCRIPTION | 6 ++-- MD5 | 11 ++++---- NAMESPACE | 1 NEWS.md | 6 ++++ R/functions.R | 57 ++++++++++++++++++++++++++++++++++++++++++++++ man/osm_other_tags_str.Rd |only man/osmclass-package.Rd | 1 7 files changed, 74 insertions(+), 8 deletions(-)
Title: NHANES Data Search, Preview, and Download Tools
Description: Search, preview, and download datasets from the National Health and Nutrition Examination Survey (NHANES) across survey cycles. The package provides functions to identify relevant datasets by keyword, inspect available .XPT files before downloading, and organize retrieved data locally. Data are retrieved from the NHANES web services available at <https://wwwn.cdc.gov/nchs/nhanes/> .
Author: Sushma Dahal [aut, cre]
Maintainer: Sushma Dahal <sushdahal@gmail.com>
Diff between nhanesdiva versions 1.0.0 dated 2026-05-19 and 1.0.1 dated 2026-05-19
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS.md |only R/get_nhanes_data.R | 6 ++++-- R/nhanes_download_utilities.R | 2 +- 5 files changed, 12 insertions(+), 9 deletions(-)
Title: Grouped Hyper Data Frame
Description: To aggregate a hyper data frame, defined in the package 'spatstat.geom', according to a grouping structure. To facilitate downstream analysis based on a "grouped" hyper data frame.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
This is a re-admission after prior archival of version 0.3.6 dated 2026-03-10
Diff between groupedHyperframe versions 0.3.6 dated 2026-03-10 and 0.4.1 dated 2026-05-19
groupedHyperframe-0.3.6/groupedHyperframe/R/Math.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/Surv.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/aggregate.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/aggregate_marks.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/append_marks.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/as.groupedHyperframe.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/attr_.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/cash_set.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/cbind.groupedHyperframe.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/cor_spatial.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/density_marks.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/fvlist.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/groupedHyperframe.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/grouped_ppp.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/hyperframe_S3.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/interpolation.fv.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/kerndens.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/key1val.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/kmeans.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/kmeans_S3.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/ksmooth.fv.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/lastLegal.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/loess.fv.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/mc_identical_by.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/nncross.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/op_hyperframe.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/op_ppp.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/op_ppplist.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/pmean.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/ppp_S3.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/quantile.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/rlabelRes.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/rmax.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/smooth.spline.fv.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/subset_ppp_tzh.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/superimpose.hyperframe.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/vignette.R |only groupedHyperframe-0.3.6/groupedHyperframe/R/vtrapz.R |only groupedHyperframe-0.3.6/groupedHyperframe/data/bib.rda |only groupedHyperframe-0.3.6/groupedHyperframe/inst |only groupedHyperframe-0.3.6/groupedHyperframe/man/aggregate.vectorlist.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/aggregate_marks.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/append_marks_set.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/as.fvlist.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/as.groupedHyperframe.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/as.list.fvlist.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/as.matrix.pairwise_cor_spatial.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/attr_.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/batch.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/bib.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/cash-set-.groupedHyperframe.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/cbind.groupedHyperframe.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/cli_.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/cumvtrapz.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/density_marks.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/dot-nncross.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/dot-ns_generic.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/fv2theo.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/get_nested.Rd |only groupedHyperframe-0.3.6/groupedHyperframe/man/global_envelope_test_.Rd |only 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More information about groupedHyperframe at CRAN
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Title: Spatiotemporal Mixture Risk Assessment
Description: Connecting spatiotemporal exposure to individual and
population-level risk via source-to-outcome continuum modeling. The
package, methods, and case-studies are described in Messier, Reif, and
Marvel (2025) <doi:10.1186/s40246-024-00711-8> and Eccles et al.
(2023) <doi:10.1016/j.scitotenv.2022.158905>.
Author: Skylar Marvel [aut, cre] ,
David Reif [aut] ,
Kyle Messier [aut] ,
Spatiotemporal Exposures and Toxicology Group [cph]
Maintainer: Skylar Marvel <skylar.marvel@nih.gov>
Diff between GeoTox versions 0.3.0 dated 2026-01-16 and 1.0.0 dated 2026-05-19
GeoTox-0.3.0/GeoTox/R/calc_concentration_response.R |only GeoTox-0.3.0/GeoTox/R/calculate_response.R |only GeoTox-0.3.0/GeoTox/R/check_lengths.R |only GeoTox-0.3.0/GeoTox/R/check_names.R |only GeoTox-0.3.0/GeoTox/R/check_types.R |only GeoTox-0.3.0/GeoTox/R/compute_sensitivity.R |only GeoTox-0.3.0/GeoTox/R/get_fixed_age.R |only GeoTox-0.3.0/GeoTox/R/get_fixed_css.R |only GeoTox-0.3.0/GeoTox/R/get_fixed_obesity.R |only GeoTox-0.3.0/GeoTox/R/get_fixed_other.R |only GeoTox-0.3.0/GeoTox/R/get_fixed_params.R |only GeoTox-0.3.0/GeoTox/R/plot_exposure.R |only GeoTox-0.3.0/GeoTox/R/plot_hill.R |only GeoTox-0.3.0/GeoTox/R/plot_resp.R |only GeoTox-0.3.0/GeoTox/R/plot_sensitivity.R |only GeoTox-0.3.0/GeoTox/R/resp_quantiles.R |only GeoTox-0.3.0/GeoTox/R/sample_Css.R |only GeoTox-0.3.0/GeoTox/R/set_boundaries.R |only GeoTox-0.3.0/GeoTox/R/set_hill_params.R |only GeoTox-0.3.0/GeoTox/R/set_population.R |only GeoTox-0.3.0/GeoTox/R/simulate_inhalation_rate.R |only GeoTox-0.3.0/GeoTox/inst/doc/package_data.Rmd |only GeoTox-0.3.0/GeoTox/man/calc_concentration_response.Rd |only GeoTox-0.3.0/GeoTox/man/calc_independent_action.Rd |only GeoTox-0.3.0/GeoTox/man/calculate_response.Rd |only GeoTox-0.3.0/GeoTox/man/compute_sensitivity.Rd |only GeoTox-0.3.0/GeoTox/man/figures/README-pressure-1.png |only GeoTox-0.3.0/GeoTox/man/get_fixed_age.Rd |only GeoTox-0.3.0/GeoTox/man/get_fixed_css.Rd |only GeoTox-0.3.0/GeoTox/man/get_fixed_obesity.Rd |only GeoTox-0.3.0/GeoTox/man/get_fixed_other.Rd |only GeoTox-0.3.0/GeoTox/man/get_fixed_params.Rd |only GeoTox-0.3.0/GeoTox/man/hill_conc.Rd |only GeoTox-0.3.0/GeoTox/man/hill_val.Rd |only GeoTox-0.3.0/GeoTox/man/plot_exposure.Rd |only GeoTox-0.3.0/GeoTox/man/plot_hill.Rd |only GeoTox-0.3.0/GeoTox/man/plot_resp.Rd |only GeoTox-0.3.0/GeoTox/man/plot_sensitivity.Rd |only GeoTox-0.3.0/GeoTox/man/resp_quantiles.Rd |only GeoTox-0.3.0/GeoTox/man/sample_Css.Rd |only GeoTox-0.3.0/GeoTox/man/set_boundaries.Rd |only GeoTox-0.3.0/GeoTox/man/set_hill_params.Rd |only GeoTox-0.3.0/GeoTox/man/set_population.Rd |only GeoTox-0.3.0/GeoTox/man/simulate_inhalation_rate.Rd |only GeoTox-0.3.0/GeoTox/tests/testthat/test-calc_concentration_response.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-calculate_response.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-check_lengths.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-check_names.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-check_types.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-compute_sensitivity.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-get_fixed_age.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-get_fixed_css.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-get_fixed_obesity.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-get_fixed_other.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-get_fixed_params.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-plot_exposure.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-plot_hill.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-plot_resp.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-plot_sensitivity.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-resp_quantiles.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-sample_Css.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-set_boundaries.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-set_hill_params.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-set_population.R |only GeoTox-0.3.0/GeoTox/tests/testthat/test-simulate_inhalation_rate.R |only GeoTox-0.3.0/GeoTox/vignettes/package_data.Rmd |only GeoTox-1.0.0/GeoTox/DESCRIPTION | 46 GeoTox-1.0.0/GeoTox/MD5 | 216 -- GeoTox-1.0.0/GeoTox/NAMESPACE | 44 GeoTox-1.0.0/GeoTox/NEWS.md | 10 GeoTox-1.0.0/GeoTox/R/GeoTox-package.R | 6 GeoTox-1.0.0/GeoTox/R/GeoTox.R | 332 +-- GeoTox-1.0.0/GeoTox/R/add_tables.R |only GeoTox-1.0.0/GeoTox/R/boundary_table.R |only GeoTox-1.0.0/GeoTox/R/calc_independent_action.R | 38 GeoTox-1.0.0/GeoTox/R/calc_internal_dose.R | 147 - 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Title: Deductive Rational Method
Description: Apply the Deductive Rational Method to a monthly series of flow or precipitation data to fill in missing data. The method is as described in: Campos, D.F., (1984, ISBN:9686194444).
Author: Alonso Arriagada [aut, cre]
Maintainer: Alonso Arriagada <alonso.arriagada@usach.cl>
Diff between DeductiveR versions 1.1.0 dated 2024-12-17 and 2.0.0 dated 2026-05-19
DESCRIPTION | 12 ++++---- MD5 | 32 ++++++++++++----------- NAMESPACE | 3 +- R/DR_SVC_package.R | 4 +- R/DR_boxplot_package.R | 8 +++-- R/DR_package.R | 23 ++++++++++------ R/DR_plot_package.R | 57 +++++++++++++++++++++++++++++++---------- R/DR_stats_package.R | 28 ++++++++++++++------ R/DR_timeseries_plot_package.R |only R/globals.R |only README.md |only build/vignette.rds |binary inst/doc/DeductiveR.R | 6 ++-- inst/doc/DeductiveR.Rmd | 7 ++--- inst/doc/DeductiveR.html | 12 ++++++-- man/DR.Rd | 4 ++ man/DR_plot.Rd | 4 ++ man/DR_timeseries_plot.Rd |only vignettes/DeductiveR.Rmd | 7 ++--- 19 files changed, 137 insertions(+), 70 deletions(-)
Title: Dynamic Web-Based Analytics for the Energy Industry
Description: A 'Shiny' web application for energy industry analytics.
Take an overview of the industry, measure Key Performance Indicators,
identify changes in the industry over time, and discover new relationships in the data.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between eAnalytics versions 0.3.1 dated 2024-09-12 and 0.4 dated 2026-05-19
eAnalytics-0.3.1/eAnalytics/inst/app/plotlyGraphWidget.r |only eAnalytics-0.3.1/eAnalytics/inst/app/tests |only eAnalytics-0.3.1/eAnalytics/inst/app/www/plotlyGraphWidget.js |only eAnalytics-0.4/eAnalytics/DESCRIPTION | 15 eAnalytics-0.4/eAnalytics/MD5 | 33 - eAnalytics-0.4/eAnalytics/NEWS.md | 24 + eAnalytics-0.4/eAnalytics/R/eAnalytics-package.R |only eAnalytics-0.4/eAnalytics/R/eAnalytics.R | 23 eAnalytics-0.4/eAnalytics/README.md | 119 ++-- eAnalytics-0.4/eAnalytics/build |only eAnalytics-0.4/eAnalytics/inst/app/dependencies.r | 1 eAnalytics-0.4/eAnalytics/inst/app/global.r | 8 eAnalytics-0.4/eAnalytics/inst/app/server.r | 240 ++++++++-- eAnalytics-0.4/eAnalytics/inst/app/ui.r | 193 +++++++- eAnalytics-0.4/eAnalytics/inst/doc |only eAnalytics-0.4/eAnalytics/man/eAnalytics-package.Rd |only eAnalytics-0.4/eAnalytics/man/eAnalytics.Rd | 12 eAnalytics-0.4/eAnalytics/man/figures |only eAnalytics-0.4/eAnalytics/vignettes |only 19 files changed, 502 insertions(+), 166 deletions(-)
Title: R and C/C++ Wrappers to Run the Leiden find_partition() Function
Description: An R to C/C++ interface that runs the Leiden community
detection algorithm to find a basic partition (). It runs the
equivalent of the 'leidenalg' find_partition() function, which is
given in the 'leidenalg' distribution file
'leiden/src/functions.py'. This package includes the
required source code files from the official 'leidenalg'
distribution and functions from the R 'igraph'
package. The 'leidenalg' distribution is available from
<https://github.com/vtraag/leidenalg/>
and the R 'igraph' package is available from
<https://igraph.org/r/>.
The Leiden algorithm is described in the article by
Traag et al. (2019) <doi:10.1038/s41598-019-41695-z>.
Leidenbase includes code from the packages:
igraph version 0.9.8 with license GPL (>= 2),
leidenalg version 0.8.10 with license GPL 3.
Author: Brent Ewing [aut, cre],
Vincent Traag [ctb],
Gabor Csardi [ctb],
Tamas Nepusz [ctb],
Szabolcs Horvat [ctb],
Fabio Zanini [ctb]
Maintainer: Brent Ewing <bge@uw.edu>
Diff between leidenbase versions 0.1.36 dated 2025-12-15 and 0.1.37 dated 2026-05-19
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- build/vignette.rds |binary src/vendor/arpack/dmout.f | 2 +- src/vendor/arpack/dvout.f | 2 +- 5 files changed, 9 insertions(+), 9 deletions(-)
Title: Tailored Knowledge Catalog
Description: Facilitate the management of data from knowledge
resources that are frequently used alone or together
in research environments.
In 'TKCat', knowledge resources are manipulated as modeled database (MDB)
objects. These objects provide access to the data tables along with a general
description of the resource and a detailed data model documenting the
tables, their fields and their relationships.
These MDBs are then gathered in catalogs that can be easily
explored and shared.
Finally, 'TKCat' provides tools to easily subset, filter and combine MDBs and
create new catalogs suited for specific needs.
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between TKCat versions 1.1.14 dated 2025-06-05 and 1.2.1 dated 2026-05-19
DESCRIPTION | 23 MD5 | 112 NAMESPACE | 8 R/ClickHouse.R | 839 ++-- R/KM-specifications.R | 1396 +++--- R/KMR.R | 1354 +++--- R/MDB.R | 1907 ++++----- R/POK.R | 302 - R/TKCat.R | 633 +-- R/chMDB.R | 5583 ++++++++++++++------------- R/chTKCat.R | 5249 +++++++++++++------------ R/collection_members.R | 375 - R/data-model.R | 25 R/file-management.R | 338 - R/fileMDB.R | 3489 ++++++++-------- R/generics.R | 298 - R/km-data-model.R | 18 R/local-collections.R | 323 - R/memoMDB.R | 2114 +++++----- R/metaMDB.R | 1314 +++--- R/namespace.R | 26 R/other-helpers.R | 57 R/shiny-helpers.R | 3527 ++++++++--------- R/zzz.R | 100 build/vignette.rds |binary inst/Collections/Built-in/BE-mapper.R | 272 - inst/Collections/Built-in/Condition-mapper.R | 175 inst/doc/EBKM-helpers.R |only inst/doc/MDB-helpers.R |only inst/doc/TKCat-KMR-POK.Rmd | 6 inst/doc/TKCat-KMR-POK.html | 38 inst/doc/TKCat.R | 11 inst/doc/TKCat.Rmd | 94 inst/doc/TKCat.html | 309 - inst/pkgdown.yml | 6 man/as_chMDB.Rd | 14 man/as_fileMDB.Rd | 12 man/chTKCat.Rd | 6 man/ch_insert.Rd | 4 man/collection_members.Rd | 2 man/data_tables.Rd | 2 man/db_disconnect.Rd | 3 man/drop_chMDB_projections.Rd |only man/explore_MDBs.Rd | 4 man/heads.Rd | 2 man/join_mdb_tables.Rd | 4 man/list_feature_properties.Rd | 2 man/list_measurement_units.Rd | 2 man/list_property_values.Rd | 2 man/list_table_features.Rd | 2 man/list_table_types.Rd | 2 man/materialize_chMDB_projections.Rd |only man/parse_R_helpers.Rd | 22 man/show_collection_def.Rd | 2 man/write_MergeTree.Rd | 28 vignettes/EBKM-helpers.R | 16 vignettes/MDB-helpers.R | 12 vignettes/TKCat-KMR-POK.Rmd | 6 vignettes/TKCat.Rmd | 94 59 files changed, 16244 insertions(+), 14320 deletions(-)
Title: Phenology Modelling of Thaumetopoea Processionea
Description: Methods to calculate and present 'PHENTHAUproc', an early warning and decision support system for hazard assessment and control of oak processionary moth (OPM) using local and spatial temperature data. It was created by Halbig et al. 2024 (<doi:10.1016/j.foreco.2023.121525>) at FVA (<https://www.fva-bw.de/en/homepage/>) Forest Research Institute Baden-Wuerttemberg, Germany and at BOKU - University of Natural Ressources and Life Sciences, Vienna, Austria.
Author: Lorenz Bachfischer [aut, cre],
Department of Forest Protection, FVA [fnd]
Maintainer: Lorenz Bachfischer <lorenz.bachfischer@posteo.de>
Diff between PHENTHAUproc versions 1.1.1 dated 2025-07-28 and 1.1.2 dated 2026-05-19
DESCRIPTION | 10 MD5 | 186 NAMESPACE | 28 NEWS.md | 33 R/calc_baskerville.R | 70 R/calc_degreedays.R | 104 R/calc_first.R | 86 R/calc_last.R | 48 R/calc_mean.R | 112 R/calc_mortality.R | 106 R/calc_phenology.R | 136 R/calc_sumefftemp.R | 94 R/calc_tsum.R | 42 R/call_function.R | 46 R/check_data_with_params.R | 34 R/check_dimension_and_time.R | 72 R/convert_df_to_srl.R | 88 R/convert_doy_to_logical.R | 56 R/convert_dwd_to_phenthau.R | 52 R/convert_hour_to_meanminmax.R | 84 R/convert_logical_to_doy.R | 92 R/convert_logical_to_time.R | 46 R/convert_sr_to_cvec.R | 40 R/data_local_daily.R | 56 R/data_local_hourly.R | 48 R/data_regional.R | 58 R/get_date.R | 40 R/get_formalArgs.R | 30 R/get_legend.R | 102 R/get_time.R | 52 R/load_test.R | 170 R/mortality.R | 208 R/parameter.R | 410 R/phenology.R | 414 R/phenthau.R | 830 R/plot_date.R | 86 R/plot_stages.R | 74 R/plot_station_step.R | 268 R/remove_false.R | 62 R/set_attributes.R | 40 R/subset_time.R | 86 R/timename.R | 38 README.md | 40 build/vignette.rds |binary inst/config/parameter.csv | 46 inst/doc/PHENTHAUproc.R | 278 inst/doc/PHENTHAUproc.Rmd | 520 inst/doc/PHENTHAUproc.html | 1306 inst/extdata/freiburg.csv | 794 inst/extdata/freiburg_hour.csv |58466 +++++++++++++++++++------------------- man/calc_baskerville.Rd | 64 man/calc_degreedays.Rd | 68 man/calc_first.Rd | 50 man/calc_last.Rd | 52 man/calc_mean.Rd | 52 man/calc_mortality.Rd | 66 man/calc_phenology.Rd | 68 man/calc_sumefftemp.Rd | 110 man/calc_tsum.Rd | 4 man/call_function.Rd | 70 man/check_data_with_params.Rd | 70 man/check_dimension_and_time.Rd | 66 man/convert_df_to_srl.Rd | 72 man/convert_doy_to_logical.Rd | 68 man/convert_dwd_to_phenthau.Rd | 64 man/convert_hour_to_meanminmax.Rd | 54 man/convert_logical_to_doy.Rd | 78 man/convert_logical_to_time.Rd | 12 man/convert_sr_to_cvec.Rd | 12 man/get_date.Rd | 68 man/get_formalArgs.Rd | 64 man/get_legend.Rd | 62 man/get_time.Rd | 70 man/load_test.Rd | 64 man/load_test_bs.Rd | 24 man/load_test_srl_hour.Rd | 24 man/local_daily.Rd | 66 man/local_hourly.Rd | 62 man/mortality.Rd | 98 man/parameter.Rd | 168 man/phenology.Rd | 202 man/phenthau.Rd | 386 man/plot_date.Rd | 72 man/plot_stages.Rd | 70 man/plot_station_step.Rd | 60 man/regional.Rd | 68 man/remove_false.Rd | 64 man/set_attributes.Rd | 64 man/subset_time.Rd | 70 man/timename.Rd | 68 tests/testthat.R | 14 tests/testthat/test_convertfuns.R | 39 tests/testthat/test_phenthau.R | 40 vignettes/PHENTHAUproc.Rmd | 520 94 files changed, 34897 insertions(+), 34897 deletions(-)
Title: Tidy Population Genetics
Description: We provide a tidy grammar of population genetics, facilitating
the manipulation and analysis of data on biallelic single nucleotide
polymorphisms (SNPs). 'tidypopgen' scales to very large genetic datasets
by storing genotypes on disk, and performing operations on them in
chunks, without ever loading all data in memory. The full
functionalities of the package are described in Carter et al. (2025)
<doi:10.1111/2041-210x.70204>.
Author: Evie Carter [aut],
Eirlys Tysall [aut],
Andrea Manica [aut, cre, cph] ,
Chang Christopher [ctb] ),
Shaun Purcell [ctb] ),
Bengtsson Henrik [ctb] )
Maintainer: Andrea Manica <am315@cam.ac.uk>
Diff between tidypopgen versions 0.4.3 dated 2026-01-23 and 0.4.4 dated 2026-05-19
tidypopgen-0.4.3/tidypopgen/tests/testthat/test_gt_extract_f2.R |only tidypopgen-0.4.4/tidypopgen/DESCRIPTION | 16 tidypopgen-0.4.4/tidypopgen/MD5 | 116 ++--- tidypopgen-0.4.4/tidypopgen/NAMESPACE | 2 tidypopgen-0.4.4/tidypopgen/NEWS.md | 16 tidypopgen-0.4.4/tidypopgen/R/gen_tibble.R | 12 tidypopgen-0.4.4/tidypopgen/R/gen_tibble_bed.R | 27 - tidypopgen-0.4.4/tidypopgen/R/gt_admixture.R | 90 +++- tidypopgen-0.4.4/tidypopgen/R/gt_as_plink.R | 10 tidypopgen-0.4.4/tidypopgen/R/gt_impute_simple.R | 8 tidypopgen-0.4.4/tidypopgen/R/gt_pca.R | 30 - tidypopgen-0.4.4/tidypopgen/R/gt_pca_autoSVD.R | 8 tidypopgen-0.4.4/tidypopgen/R/gt_pca_partialSVD.R | 9 tidypopgen-0.4.4/tidypopgen/R/gt_pca_randomSVD.R | 8 tidypopgen-0.4.4/tidypopgen/R/gt_pcadapt.R | 7 tidypopgen-0.4.4/tidypopgen/R/gt_update_backingfile.R | 8 tidypopgen-0.4.4/tidypopgen/R/loci_alt_freq.R | 9 tidypopgen-0.4.4/tidypopgen/R/predict_gt_pca.R | 56 +- tidypopgen-0.4.4/tidypopgen/R/qc_report_loci.R | 122 ++--- tidypopgen-0.4.4/tidypopgen/R/upset_plot.R |only tidypopgen-0.4.4/tidypopgen/README.md | 4 tidypopgen-0.4.4/tidypopgen/inst/WORDLIST | 2 tidypopgen-0.4.4/tidypopgen/inst/doc/a01_overview.html | 86 ++-- tidypopgen-0.4.4/tidypopgen/inst/doc/a02_qc.R | 12 tidypopgen-0.4.4/tidypopgen/inst/doc/a02_qc.Rmd | 29 - tidypopgen-0.4.4/tidypopgen/inst/doc/a02_qc.html | 204 ++++------ tidypopgen-0.4.4/tidypopgen/inst/doc/tidypopgen.html | 6 tidypopgen-0.4.4/tidypopgen/man/autoplot.qc_report_loci.Rd | 2 tidypopgen-0.4.4/tidypopgen/man/gt_admixture.Rd | 7 tidypopgen-0.4.4/tidypopgen/man/gt_pca.Rd | 36 + tidypopgen-0.4.4/tidypopgen/man/gt_pca_autoSVD.Rd | 15 tidypopgen-0.4.4/tidypopgen/man/gt_pca_partialSVD.Rd | 17 tidypopgen-0.4.4/tidypopgen/man/gt_pca_randomSVD.Rd | 17 tidypopgen-0.4.4/tidypopgen/man/gt_update_backingfile.Rd | 2 tidypopgen-0.4.4/tidypopgen/man/upset_plot.Rd |only tidypopgen-0.4.4/tidypopgen/src/vcf_parser_fast.cpp | 76 ++- tidypopgen-0.4.4/tidypopgen/tests/testthat/Rplots.pdf |binary tidypopgen-0.4.4/tidypopgen/tests/testthat/_test_gt_extract_f2.R |only tidypopgen-0.4.4/tidypopgen/tests/testthat/test_augment_loci.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_autoplot_loci_report.R | 142 ++++++ tidypopgen-0.4.4/tidypopgen/tests/testthat/test_cbind_gen_tbl.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_count_vcf_individuals.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_filter_high_relatedness.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_gen_tibble_vcf.R | 13 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_gen_tibble_versioning.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_gt_admix_methods.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_gt_admixture.R | 132 ++++++ tidypopgen-0.4.4/tidypopgen/tests/testthat/test_gt_impute_simple.R | 184 ++------- tidypopgen-0.4.4/tidypopgen/tests/testthat/test_gt_impute_xgboost.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_gt_pca.R | 1 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_gt_pcadapt.R | 83 ++++ tidypopgen-0.4.4/tidypopgen/tests/testthat/test_gt_pseudohaploid.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_gt_snmf.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_gt_tibble_vcf.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_indiv_het_obs.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_indiv_inbreeding.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_indiv_missingness.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_loci_freq.R | 33 + tidypopgen-0.4.4/tidypopgen/tests/testthat/test_qc_report_indiv.R | 7 tidypopgen-0.4.4/tidypopgen/tests/testthat/test_qc_report_loci.R | 4 tidypopgen-0.4.4/tidypopgen/vignettes/a02_qc.Rmd | 29 - 61 files changed, 1192 insertions(+), 596 deletions(-)
Title: Resampling Algorithms for 'mlr3' Framework
Description: A supervised learning algorithm inputs a train set,
and outputs a prediction function, which can be used on a test set.
If each data point belongs to a subset
(such as geographic region, year, etc), then
how do we know if subsets are similar enough so that
we can get accurate predictions on one subset,
after training on Other subsets?
And how do we know if training on All subsets would improve
prediction accuracy, relative to training on the Same subset?
SOAK, Same/Other/All K-fold cross-validation, <doi:10.1002/sam.70055>
can be used to answer these questions, by fixing a test subset,
training models on Same/Other/All subsets, and then
comparing test error rates (Same versus Other and Same versus All).
Also provides code for estimating how many train samples
are required to get accurate predictions on a test set.
Author: Toby Hocking [aut, cre] ,
Daniel Agyapong [ctb] ,
Michel Lang [ctb] ,
Bernd Bischl [ctb] ,
Jakob Richter [ctb] ,
Patrick Schratz [ctb] ,
Giuseppe Casalicchio [ctb] ,
Stefan Coors [ctb] ,
Quay Au [ctb] ,
Martin Binder [ctb],
Florian Pfisterer [ctb] ,
[...truncated...]
Maintainer: Toby Hocking <toby.hocking@r-project.org>
Diff between mlr3resampling versions 2026.2.24 dated 2026-02-26 and 2026.5.19 dated 2026-05-19
mlr3resampling-2026.2.24/mlr3resampling/R/ResamplingBase.R |only mlr3resampling-2026.2.24/mlr3resampling/R/ResamplingSameOtherCV.R |only mlr3resampling-2026.2.24/mlr3resampling/R/ResamplingVariableSizeTrainCV.R |only mlr3resampling-2026.2.24/mlr3resampling/inst/doc/Newer_resamplers.R |only mlr3resampling-2026.2.24/mlr3resampling/inst/doc/Newer_resamplers.Rmd |only mlr3resampling-2026.2.24/mlr3resampling/inst/doc/Newer_resamplers.html |only mlr3resampling-2026.2.24/mlr3resampling/inst/doc/Older_resamplers.R |only mlr3resampling-2026.2.24/mlr3resampling/inst/doc/Older_resamplers.Rmd |only mlr3resampling-2026.2.24/mlr3resampling/inst/doc/Older_resamplers.html |only mlr3resampling-2026.2.24/mlr3resampling/man/ResamplingSameOtherCV.Rd |only mlr3resampling-2026.2.24/mlr3resampling/man/ResamplingVariableSizeTrainCV.Rd |only mlr3resampling-2026.2.24/mlr3resampling/vignettes/Newer_resamplers.Rmd |only mlr3resampling-2026.2.24/mlr3resampling/vignettes/Older_resamplers.Rmd |only mlr3resampling-2026.5.19/mlr3resampling/DESCRIPTION | 25 mlr3resampling-2026.5.19/mlr3resampling/MD5 | 100 + mlr3resampling-2026.5.19/mlr3resampling/NAMESPACE | 8 mlr3resampling-2026.5.19/mlr3resampling/NEWS | 65 mlr3resampling-2026.5.19/mlr3resampling/R/RcppExports.R |only mlr3resampling-2026.5.19/mlr3resampling/R/ResamplingSameOtherSizesCV.R | 96 + mlr3resampling-2026.5.19/mlr3resampling/R/proj.R | 48 mlr3resampling-2026.5.19/mlr3resampling/R/pvalue.R | 350 +++-- mlr3resampling-2026.5.19/mlr3resampling/R/score.R | 19 mlr3resampling-2026.5.19/mlr3resampling/R/zzz.R | 2 mlr3resampling-2026.5.19/mlr3resampling/build/vignette.rds |binary mlr3resampling-2026.5.19/mlr3resampling/inst/doc/SOAKED.R |only mlr3resampling-2026.5.19/mlr3resampling/inst/doc/SOAKED.Rmd |only mlr3resampling-2026.5.19/mlr3resampling/inst/doc/SOAKED.html |only mlr3resampling-2026.5.19/mlr3resampling/inst/doc/proj.R |only mlr3resampling-2026.5.19/mlr3resampling/inst/doc/proj.Rmd |only mlr3resampling-2026.5.19/mlr3resampling/inst/doc/proj.html |only mlr3resampling-2026.5.19/mlr3resampling/inst/doc/subset_group_stratum.R |only mlr3resampling-2026.5.19/mlr3resampling/inst/doc/subset_group_stratum.Rmd |only mlr3resampling-2026.5.19/mlr3resampling/inst/doc/subset_group_stratum.html |only mlr3resampling-2026.5.19/mlr3resampling/inst/extdata |only mlr3resampling-2026.5.19/mlr3resampling/man/AZtrees.Rd | 1 mlr3resampling-2026.5.19/mlr3resampling/man/ResamplingSameOtherSizesCV.Rd | 125 + mlr3resampling-2026.5.19/mlr3resampling/man/proj_grid.Rd | 11 mlr3resampling-2026.5.19/mlr3resampling/man/proj_results.Rd | 2 mlr3resampling-2026.5.19/mlr3resampling/man/proj_submit.Rd | 9 mlr3resampling-2026.5.19/mlr3resampling/man/proj_test.Rd | 15 mlr3resampling-2026.5.19/mlr3resampling/man/pvalue.Rd | 57 mlr3resampling-2026.5.19/mlr3resampling/man/pvalue_downsample.Rd |only mlr3resampling-2026.5.19/mlr3resampling/src |only mlr3resampling-2026.5.19/mlr3resampling/tests/testthat/test-CRAN-pvalue-downsample.R |only mlr3resampling-2026.5.19/mlr3resampling/tests/testthat/test-CRAN.R | 687 +++++++--- mlr3resampling-2026.5.19/mlr3resampling/vignettes/SOAKED.Rmd |only mlr3resampling-2026.5.19/mlr3resampling/vignettes/mlr3resampling |only mlr3resampling-2026.5.19/mlr3resampling/vignettes/proj.Rmd |only mlr3resampling-2026.5.19/mlr3resampling/vignettes/subset_group_stratum.Rmd |only mlr3resampling-2026.5.19/mlr3resampling/vignettes/vignettes |only 50 files changed, 1181 insertions(+), 439 deletions(-)
More information about mlr3resampling at CRAN
Permanent link
Title: Scientific Content and Citation Analysis from PDF Documents
Description: Provides comprehensive tools for extracting and analyzing scientific
content from PDF documents, including citation extraction, reference matching,
text analysis, and bibliometric indicators. Supports multi-column PDF layouts,
'CrossRef' API <https://www.crossref.org/documentation/retrieve-metadata/rest-api/> integration, and advanced citation parsing.
Author: Massimo Aria [cre, aut, cph] ,
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between contentanalysis versions 1.0.0 dated 2026-03-07 and 1.1.0 dated 2026-05-19
DESCRIPTION | 8 MD5 | 55 +-- NAMESPACE | 6 NEWS.md | 9 R/citation_analysis.R | 195 +++++++++++ R/create_citation_network.R | 25 + R/document_sections.R | 231 +++++++++++-- R/globals.R | 22 + R/pdf_import.R | 365 ++++++++++++++++++++- R/reference_parsing.R | 507 +++++++++++++++++++++++------- R/rhetorical_llm.R |only R/rhetorical_moves.R |only R/rhetorical_rules.R |only README.md | 388 ++++++++++++++++------ build/vignette.rds |binary inst/doc/introduction.html | 426 ++++++++++--------------- man/analyze_scientific_content.Rd | 12 man/classify_rhetorical_moves.Rd |only man/enrich_crossref_with_pdf.Rd |only man/figures/README-refs-per-section.png |binary man/figures/README-tfidf-bars.png |binary man/figures/README-tfidf-heatmap.png |binary man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-14-1.png |binary man/figures/README-unnamed-chunk-14-2.png |binary man/figures/README-unnamed-chunk-14-3.png |binary man/figures/README-unnamed-chunk-24-1.png |only man/figures/README-word-distribution.png |binary man/parse_references_section.Rd | 16 man/pdf2txt_multicolumn_safe.Rd | 4 man/print.rhetorical_move_analysis.Rd |only tests/testthat/test-reference_parsing.r | 100 ----- 32 files changed, 1700 insertions(+), 669 deletions(-)
More information about contentanalysis at CRAN
Permanent link
Title: Fast and Efficient (Automated) Analysis of Sparse Omics Data
Description: A generalised data structure for fast and efficient loading and data munching of sparse omics data. The 'OmicFlow' requires an up-front validated metadata template from the user,
which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an 'omics' class.
Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated 'autoFlow' method to generate a comprehensive report.
Author: Alem Gusinac [aut, cre] ,
Thomas Ederveen [aut] ,
Annemarie Boleij [aut, fnd]
Maintainer: Alem Gusinac <alem.gusinac@gmail.com>
Diff between OmicFlow versions 1.5.1 dated 2026-02-27 and 1.6.0 dated 2026-05-19
OmicFlow-1.5.1/OmicFlow/R/foldchange.R |only OmicFlow-1.5.1/OmicFlow/man/foldchange.Rd |only OmicFlow-1.5.1/OmicFlow/src/PairwiseWorker.h |only OmicFlow-1.5.1/OmicFlow/src/branches.cpp |only OmicFlow-1.5.1/OmicFlow/src/distances.cpp |only OmicFlow-1.5.1/OmicFlow/src/distances.h |only OmicFlow-1.5.1/OmicFlow/src/interface.cpp |only OmicFlow-1.6.0/OmicFlow/DESCRIPTION | 10 OmicFlow-1.6.0/OmicFlow/MD5 | 94 - OmicFlow-1.6.0/OmicFlow/NAMESPACE | 2 OmicFlow-1.6.0/OmicFlow/R/RcppExports.R | 8 OmicFlow-1.6.0/OmicFlow/R/bray.R | 2 OmicFlow-1.6.0/OmicFlow/R/canberra.R | 2 OmicFlow-1.6.0/OmicFlow/R/cosine.R | 2 OmicFlow-1.6.0/OmicFlow/R/diversity.R | 9 OmicFlow-1.6.0/OmicFlow/R/euclidean.R |only OmicFlow-1.6.0/OmicFlow/R/jaccard.R | 2 OmicFlow-1.6.0/OmicFlow/R/jsd.R | 2 OmicFlow-1.6.0/OmicFlow/R/manhattan.R | 2 OmicFlow-1.6.0/OmicFlow/R/metagenomics-class.R | 257 ++++ OmicFlow-1.6.0/OmicFlow/R/omics-class.R | 599 ++++++---- OmicFlow-1.6.0/OmicFlow/R/unifrac.R | 4 OmicFlow-1.6.0/OmicFlow/R/volcano_plot.R | 4 OmicFlow-1.6.0/OmicFlow/man/bray.Rd | 2 OmicFlow-1.6.0/OmicFlow/man/canberra.Rd | 2 OmicFlow-1.6.0/OmicFlow/man/cosine.Rd | 2 OmicFlow-1.6.0/OmicFlow/man/diversity.Rd | 2 OmicFlow-1.6.0/OmicFlow/man/euclidean.Rd |only OmicFlow-1.6.0/OmicFlow/man/jaccard.Rd | 2 OmicFlow-1.6.0/OmicFlow/man/jsd.Rd | 2 OmicFlow-1.6.0/OmicFlow/man/manhattan.Rd | 2 OmicFlow-1.6.0/OmicFlow/man/metagenomics.Rd | 118 + OmicFlow-1.6.0/OmicFlow/man/omics.Rd | 309 ++--- OmicFlow-1.6.0/OmicFlow/man/proteomics.Rd | 6 OmicFlow-1.6.0/OmicFlow/man/unifrac.Rd | 2 OmicFlow-1.6.0/OmicFlow/man/volcano_plot.Rd | 2 OmicFlow-1.6.0/OmicFlow/src/RcppExports.cpp | 22 OmicFlow-1.6.0/OmicFlow/src/branches.h | 220 +++ OmicFlow-1.6.0/OmicFlow/src/init.cpp |only OmicFlow-1.6.0/OmicFlow/src/metrics.cpp |only OmicFlow-1.6.0/OmicFlow/src/metrics.h |only OmicFlow-1.6.0/OmicFlow/src/unifrac.h |only OmicFlow-1.6.0/OmicFlow/src/utils.h |only OmicFlow-1.6.0/OmicFlow/tests/testthat/_snaps/alpha_diversity.md | 180 +-- OmicFlow-1.6.0/OmicFlow/tests/testthat/_snaps/dfe.md | 489 +++++--- OmicFlow-1.6.0/OmicFlow/tests/testthat/_snaps/distances.md | 35 OmicFlow-1.6.0/OmicFlow/tests/testthat/_snaps/metagenomics.md | 70 - OmicFlow-1.6.0/OmicFlow/tests/testthat/_snaps/proteomics.md | 70 - OmicFlow-1.6.0/OmicFlow/tests/testthat/_snaps/transformations.md | 196 +++ OmicFlow-1.6.0/OmicFlow/tests/testthat/test-autoflow.R | 6 OmicFlow-1.6.0/OmicFlow/tests/testthat/test-composition.R | 1 OmicFlow-1.6.0/OmicFlow/tests/testthat/test-dfe.R | 18 OmicFlow-1.6.0/OmicFlow/tests/testthat/test-distances.R | 73 - OmicFlow-1.6.0/OmicFlow/tests/testthat/test-ordination.R | 2 OmicFlow-1.6.0/OmicFlow/tests/testthat/test-transformations.R | 20 55 files changed, 1998 insertions(+), 854 deletions(-)
Title: Self-Organising Maps Coupled with Hierarchical Cluster Analysis
Description: Implements self-organising maps combined with hierarchical cluster analysis (SOM-HCA) for clustering and visualization of high-dimensional data.
The package includes functions to estimate the optimal map size based on various quality measures
and to generate a model using the selected dimensions.
It also performs hierarchical clustering on the map nodes or other data to group similar units.
Documentation about the SOM-HCA method is provided in Pastorelli et al. (2024)
<doi:10.1002/xrs.3388>.
Author: Gianluca Pastorelli [aut, cre]
Maintainer: Gianluca Pastorelli <gianluca.pastorelli@gmail.com>
Diff between somhca versions 0.3.0 dated 2026-02-07 and 0.4.0 dated 2026-05-19
DESCRIPTION | 8 ++++---- MD5 | 28 +++++++++++++++------------- NAMESPACE | 2 ++ R/clusterSOM.R | 25 +++++++++++-------------- R/clusterX.R |only R/finalSOM.R | 18 ++++++++---------- R/generatePlot.R | 11 +++++------ R/loadMatrix.R | 20 +++++++++----------- R/optimalSOM.R | 19 ++++++++++--------- man/clusterSOM.Rd | 17 +++++++---------- man/clusterX.Rd |only man/finalSOM.Rd | 16 ++++++++-------- man/generatePlot.Rd | 11 ++++++----- man/getClusterData.Rd | 2 +- man/loadMatrix.Rd | 18 +++++++++--------- man/optimalSOM.Rd | 17 ++++++++++------- 16 files changed, 105 insertions(+), 107 deletions(-)
Title: Multivariate Synthetic Control Method Using Time Series
Description: Three generalizations of the synthetic control method (which has
already an implementation in package 'Synth') are implemented: first,
'MSCMT' allows for using multiple outcome variables, second, time series
can be supplied as economic predictors, and third, a well-defined
cross-validation approach can be used.
Much effort has been taken to make the implementation as stable as possible
(including edge cases) without losing computational efficiency.
A detailed description of the main algorithms is given in
Becker and Klößner (2018) <doi:10.1016/j.ecosta.2017.08.002>.
Author: Martin Becker [aut, cre] ,
Stefan Kloessner [aut],
Karline Soetaert [com],
Jack Dongarra [cph],
R.J. Hanson [cph],
K.H. Haskell [cph],
Cleve Moler [cph],
LAPACK authors [cph]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>
Diff between MSCMT versions 1.4.1 dated 2025-12-08 and 1.4.2 dated 2026-05-19
DESCRIPTION | 8 ++-- MD5 | 14 +++---- NEWS | 7 +++ build/partial.rdb |binary inst/doc/CheckingSynth.html | 12 +++--- inst/doc/WorkingWithMSCMT.html | 78 ++++++++++++++++++++++++----------------- src/inverse.f | 22 +++++------ src/solve.f | 18 ++++----- 8 files changed, 91 insertions(+), 68 deletions(-)
Title: Tidy Tools for Joinpoint Regression Models
Description: Provides tools to fit joinpoint regression models with a log-linear
specification by levels of a categorical variable. The package acts as a
wrapper around the 'segmented' package, facilitating model fitting, selection,
and interpretation. It includes functions to estimate the Annual Percent Change
(APC) and the Average Annual Percent Change (AAPC), along with their 95%
confidence intervals, and to generate formatted summary tables and plots of results.
Author: Tamara Ricardo [aut, cre]
Maintainer: Tamara Ricardo <tamararicardo83@gmail.com>
Diff between joinpointR versions 0.5.0 dated 2026-05-02 and 0.6.0 dated 2026-05-19
DESCRIPTION | 8 ++-- MD5 | 10 ++--- NEWS.md | 20 +++++++--- R/model_jp.R | 110 ++++++++++++++++++++++++++++++++++++++++++-------------- README.md | 4 +- man/model_jp.Rd | 28 ++++++++------ 6 files changed, 127 insertions(+), 53 deletions(-)
Title: Functional Utilities for Data Processing
Description: Covers several areas of data processing: batch-splitting, reading and writing of large
data files, data tiling, one-hot encoding and decoding of data tiles, stratified proportional
(random or probabilistic) data sampling, data normalization and thresholding, substring location
and commonalities inside strings, and location and tabulation of amino acids, modifications or
associated monoisotopic masses inside modified peptides. The extractor utility implements code from
'Matrix.utils', Varrichio C (2020), <https://cran.r-project.org/package=Matrix.utils>.
Author: Dragos Bandur [aut, cre]
Maintainer: Dragos Bandur <dbandur@sympatico.ca>
Diff between akin versions 0.3.2 dated 2026-05-04 and 0.3.3 dated 2026-05-19
akin-0.3.2/akin/R/akin-deprecated.R |only akin-0.3.2/akin/R/common.R |only akin-0.3.2/akin/R/core.R |only akin-0.3.2/akin/R/corePar.R |only akin-0.3.2/akin/man/akin-deprecated.Rd |only akin-0.3.3/akin/DESCRIPTION | 12 +- akin-0.3.3/akin/MD5 | 35 +++----- akin-0.3.3/akin/NAMESPACE | 5 - akin-0.3.3/akin/NEWS.md | 15 +++ akin-0.3.3/akin/R/akin-defunct.R |only akin-0.3.3/akin/R/akin-package.R | 12 +- akin-0.3.3/akin/R/cover.R | 69 ++++++++++------ akin-0.3.3/akin/R/fcommon.R | 126 +++++++++++++---------------- akin-0.3.3/akin/R/findLoc.R | 2 akin-0.3.3/akin/R/plot.R | 8 - akin-0.3.3/akin/R/utils.R | 61 +++++++++----- akin-0.3.3/akin/R/zzz.R | 8 - akin-0.3.3/akin/man/akin-defunct.Rd |only akin-0.3.3/akin/man/akin-package.Rd | 8 - akin-0.3.3/akin/man/cover.Rd | 139 +++++++++++++++++---------------- akin-0.3.3/akin/man/fcommon.Rd | 79 ++++++------------ akin-0.3.3/akin/man/findLoc.Rd | 2 22 files changed, 300 insertions(+), 281 deletions(-)
Title: Develop Concise but Comprehensive Shortened Versions of
Psychometric Instruments
Description: Operationalizes the identification problem of which subset of items should be kept in the shortened version of a said psychometric instrument to best represent the set of items comprised in the original version of the said psychometric instrument.
Author: Lois Fournier [aut, cre] ,
Alexandre Heeren [aut] ,
Stephanie Baggio [aut] ,
Luke Clark [aut] ,
Antonio Verdejo-Garcia [aut] ,
Jose C. Perales [aut] ,
Joel Billieux [aut]
Maintainer: Lois Fournier <lois.fournier@unil.ch>
Diff between shortr versions 1.0.2 dated 2026-04-14 and 1.0.3 dated 2026-05-19
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/shortr.R | 58 +++++++++++++++++++++++++++++----------------------------- README.md | 2 +- inst/CITATION | 2 +- man/shortr.Rd | 2 +- 7 files changed, 49 insertions(+), 41 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau
APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's
geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping
and spatial analysis.
Author: Kyle Walker [aut, cre],
Matt Herman [aut],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tidycensus versions 1.7.5 dated 2026-02-09 and 1.8.0 dated 2026-05-19
DESCRIPTION | 13 +++++++------ MD5 | 38 +++++++++++++++++++++----------------- NEWS.md | 8 +++++++- R/acs.R | 2 +- R/census.R | 9 ++++----- R/helpers.R | 38 +++++++++++++++++--------------------- R/load_data.R | 28 +++++++++++++++++----------- R/moe.R | 23 +++++++++++++++-------- R/popgroups.R | 20 +++++++++++++++++--- R/pums.R | 6 +++--- R/search_variables.R | 21 +++++++++++++-------- README.md | 9 ++++++++- data/acs5_geography.rda |binary data/pums_variables.rda |binary man/acs5_geography.Rd | 2 +- man/get_pop_groups.Rd | 5 ++++- man/load_variables.Rd | 6 +++++- man/pums_variables.Rd | 2 +- tests |only 19 files changed, 141 insertions(+), 89 deletions(-)
Title: Probabilistic Efficiency Analysis Using Explainable Artificial
Intelligence
Description: Provides a probabilistic framework that integrates Data Envelopment
Analysis (DEA) (Banker et al., 1984) <doi:10.1287/mnsc.30.9.1078> with machine
learning classifiers (Kuhn, 2008) <doi:10.18637/jss.v028.i05> to estimate both the
(in)efficiency status and the probability of efficiency for decision-making
units. The approach trains predictive models on DEA-derived efficiency labels
(Charnes et al., 1985) <doi:10.1016/0304-4076(85)90133-2>, enabling explainable
artificial intelligence (XAI) workflows with global and local interpretability
tools, including permutation importance (Molnar et al., 2018) <doi:10.21105/joss.00786>,
Shapley value explanations (Strumbelj & Kononenko, 2014) <doi:10.1007/s10115-013-0679-x>,
and sensitivity analysis (Cortez, 2011) <https://CRAN.R-project.org/package=rminer>.
The framework also supports probability-threshold peer selection and counterfactual
improvement recommendations for benchmarking and policy evaluation. T [...truncated...]
Author: Ricardo Gonzalez Moyano [cre, aut] ,
Juan Aparicio [aut] ,
Jose Luis Zofio [aut] ,
Victor Espana [aut]
Maintainer: Ricardo Gonzalez Moyano <ricardo.gonzalezm@umh.es>
Diff between PEAXAI versions 1.0.0 dated 2026-01-07 and 1.0.1 dated 2026-05-19
PEAXAI-1.0.0/PEAXAI/R/PEAXAI_targets.R |only PEAXAI-1.0.0/PEAXAI/man/PEAXAI_targets.Rd |only PEAXAI-1.0.1/PEAXAI/DESCRIPTION | 12 PEAXAI-1.0.1/PEAXAI/MD5 | 55 PEAXAI-1.0.1/PEAXAI/NAMESPACE | 111 - PEAXAI-1.0.1/PEAXAI/R/PEAXAI_counterfactuals.R |only PEAXAI-1.0.1/PEAXAI/R/PEAXAI_fitting.R | 919 +++++--- PEAXAI-1.0.1/PEAXAI/R/PEAXAI_importance_features.R | 527 ++++- PEAXAI-1.0.1/PEAXAI/R/PEAXAI_peer.R | 29 PEAXAI-1.0.1/PEAXAI/R/PEAXAI_ranking.R | 28 PEAXAI-1.0.1/PEAXAI/R/SMOTE_Z_data.R |only PEAXAI-1.0.1/PEAXAI/R/SMOTE_data.R | 7 PEAXAI-1.0.1/PEAXAI/R/convex_facets.R | 119 - PEAXAI-1.0.1/PEAXAI/R/get_SMOTE_DMUs.R | 305 ++ PEAXAI-1.0.1/PEAXAI/R/label_efficiency.R | 371 ++- PEAXAI-1.0.1/PEAXAI/R/preprocessing.R | 2062 ++++++++++---------- PEAXAI-1.0.1/PEAXAI/R/training.R | 5 PEAXAI-1.0.1/PEAXAI/inst/doc/PEAXAI.R | 17 PEAXAI-1.0.1/PEAXAI/inst/doc/PEAXAI.Rmd | 20 PEAXAI-1.0.1/PEAXAI/inst/doc/PEAXAI.html | 419 ++-- PEAXAI-1.0.1/PEAXAI/man/PEAXAI_counterfactuals.Rd |only PEAXAI-1.0.1/PEAXAI/man/PEAXAI_fitting.Rd | 256 +- PEAXAI-1.0.1/PEAXAI/man/PEAXAI_global_importance.Rd | 61 PEAXAI-1.0.1/PEAXAI/man/PEAXAI_local_importance.Rd |only PEAXAI-1.0.1/PEAXAI/man/PEAXAI_peer.Rd | 28 PEAXAI-1.0.1/PEAXAI/man/PEAXAI_ranking.Rd | 28 PEAXAI-1.0.1/PEAXAI/man/SMOTE_Z_data.Rd |only PEAXAI-1.0.1/PEAXAI/man/convex_facets.Rd | 19 PEAXAI-1.0.1/PEAXAI/man/find_beta_maxmin.Rd | 8 PEAXAI-1.0.1/PEAXAI/man/get_SMOTE_DMUs.Rd | 22 PEAXAI-1.0.1/PEAXAI/man/label_efficiency.Rd | 142 - PEAXAI-1.0.1/PEAXAI/vignettes/PEAXAI.Rmd | 20 32 files changed, 3245 insertions(+), 2345 deletions(-)
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 3.0.19 dated 2026-04-22 and 3.1.0 dated 2026-05-19
tweedie-3.0.19/tweedie/src/Makevars.HIDE |only tweedie-3.0.19/tweedie/tests/testthat/tests-valgrind.RHIDE |only tweedie-3.1.0/tweedie/DESCRIPTION | 8 tweedie-3.1.0/tweedie/MD5 | 439 ++++++++++++- tweedie-3.1.0/tweedie/NEWS.md | 25 tweedie-3.1.0/tweedie/R/dtweedie_series.R | 93 ++ tweedie-3.1.0/tweedie/R/tweedie-internals.R | 52 - tweedie-3.1.0/tweedie/R/tweedie_integrand.R | 120 ++- tweedie-3.1.0/tweedie/R/tweedie_plot.R | 60 + tweedie-3.1.0/tweedie/R/tweedie_profile.R | 106 ++- tweedie-3.1.0/tweedie/build/partial.rdb |binary tweedie-3.1.0/tweedie/build/vignette.rds |binary tweedie-3.1.0/tweedie/inst/CITATION | 4 tweedie-3.1.0/tweedie/inst/doc/tweedie.R | 127 --- tweedie-3.1.0/tweedie/inst/doc/tweedie.Rmd | 234 ------ tweedie-3.1.0/tweedie/inst/doc/tweedie.html | 346 ---------- tweedie-3.1.0/tweedie/man/dtweedie_series.Rd | 4 tweedie-3.1.0/tweedie/man/tweedie_integrand.Rd | 11 tweedie-3.1.0/tweedie/man/tweedie_plot.Rd | 20 tweedie-3.1.0/tweedie/man/tweedie_profile.Rd | 15 tweedie-3.1.0/tweedie/src/Doxyfile |only tweedie-3.1.0/tweedie/src/deps.out |only tweedie-3.1.0/tweedie/src/docs |only tweedie-3.1.0/tweedie/tests/testthat/Rplots.pdf |binary tweedie-3.1.0/tweedie/vignettes/tweedie.Rmd | 234 ------ 25 files changed, 776 insertions(+), 1122 deletions(-)
Title: A Unified Tidy Interface to R's Machine Learning Ecosystem
Description: Provides a unified tidyverse-compatible interface to R's machine
learning ecosystem - from data ingestion to model publishing. The tl_read()
family reads data from files ('CSV', 'Excel', 'Parquet', 'JSON'), databases
('SQLite', 'PostgreSQL', 'MySQL', 'BigQuery'), and cloud sources ('S3',
'GitHub', 'Kaggle'). The tl_model() function wraps established
implementations from 'glmnet', 'randomForest', 'xgboost', 'e1071', 'rpart',
'gbm', 'nnet', 'cluster', 'dbscan', and others with consistent function
signatures and tidy tibble output. Results flow into unified 'ggplot2'-based
visualization and optional formatted 'gt' tables via the tl_table() family.
The underlying algorithms are unchanged; 'tidylearn' simply makes them
easier to use together. Access raw model objects via the $fit slot for
package-specific functionality.
Methods include random forests Breiman (2001) <doi:10.1023/A:1010933404324>,
LASSO regression Tibshirani (1996) <doi:10.1111/j.2517-6161.1996.tb02080.x>,
elastic [...truncated...]
Author: Cesaire Tobias [aut, cre]
Maintainer: Cesaire Tobias <cesaire@sheetsolved.com>
Diff between tidylearn versions 0.3.0 dated 2026-04-09 and 0.3.1 dated 2026-05-19
tidylearn-0.3.0/tidylearn/man/tl_extract_importance_regularized.Rd |only tidylearn-0.3.1/tidylearn/DESCRIPTION | 18 - tidylearn-0.3.1/tidylearn/MD5 | 46 +- tidylearn-0.3.1/tidylearn/NEWS.md | 54 +++ tidylearn-0.3.1/tidylearn/R/integration.R | 12 tidylearn-0.3.1/tidylearn/R/model-selection.R | 3 tidylearn-0.3.1/tidylearn/R/supervised-xgboost.R | 3 tidylearn-0.3.1/tidylearn/R/tables.R | 2 tidylearn-0.3.1/tidylearn/R/unsupervised-dbscan.R | 2 tidylearn-0.3.1/tidylearn/R/unsupervised-distance.R | 93 +++--- tidylearn-0.3.1/tidylearn/R/unsupervised-market-basket.R | 3 tidylearn-0.3.1/tidylearn/R/unsupervised-validation.R | 6 tidylearn-0.3.1/tidylearn/R/visualization.R | 8 tidylearn-0.3.1/tidylearn/R/workflows.R | 3 tidylearn-0.3.1/tidylearn/README.md | 16 - tidylearn-0.3.1/tidylearn/inst/WORDLIST | 93 +++--- tidylearn-0.3.1/tidylearn/inst/doc/data-ingestion.html | 16 - tidylearn-0.3.1/tidylearn/inst/doc/integration-workflows.html | 18 - tidylearn-0.3.1/tidylearn/man/compare_distances.Rd | 4 tidylearn-0.3.1/tidylearn/man/create_cluster_dashboard.Rd | 4 tidylearn-0.3.1/tidylearn/man/tl_auto_ml.Rd | 3 tidylearn-0.3.1/tidylearn/man/tl_get_importance_regularized.Rd |only tidylearn-0.3.1/tidylearn/man/visualize_rules.Rd | 3 tidylearn-0.3.1/tidylearn/tests/testthat/Rplots.pdf |binary tidylearn-0.3.1/tidylearn/tests/testthat/test-unsupervised.R | 155 ++++++++++ 25 files changed, 410 insertions(+), 155 deletions(-)
Title: Simulated Point-Pattern via Vectorized Parameterization
Description: An intuitive interface to simulate superimposed (marked) point patterns with vectorized parameterization of random point pattern and distribution of marks.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
This is a re-admission after prior archival of version 0.2.3 dated 2026-03-02
Diff between groupedHyperframe.random versions 0.2.3 dated 2026-03-02 and 0.3.0 dated 2026-05-19
groupedHyperframe.random-0.2.3/groupedHyperframe.random/R/grouped_rppp.R |only groupedHyperframe.random-0.2.3/groupedHyperframe.random/R/mvrnorm2.R |only groupedHyperframe.random-0.2.3/groupedHyperframe.random/R/onLoad.R |only groupedHyperframe.random-0.2.3/groupedHyperframe.random/README.md |only groupedHyperframe.random-0.2.3/groupedHyperframe.random/man/groupedHyperframe.random-package.Rd |only groupedHyperframe.random-0.2.3/groupedHyperframe.random/man/grouped_rppp.Rd |only groupedHyperframe.random-0.2.3/groupedHyperframe.random/man/mvrnorm2.Rd |only groupedHyperframe.random-0.3.0/groupedHyperframe.random/DESCRIPTION | 22 +- groupedHyperframe.random-0.3.0/groupedHyperframe.random/MD5 | 21 -- groupedHyperframe.random-0.3.0/groupedHyperframe.random/NAMESPACE | 13 - groupedHyperframe.random-0.3.0/groupedHyperframe.random/R/0PACKAGE.R | 9 groupedHyperframe.random-0.3.0/groupedHyperframe.random/R/rfactor.R | 9 groupedHyperframe.random-0.3.0/groupedHyperframe.random/R/rppp.R | 93 ++++------ groupedHyperframe.random-0.3.0/groupedHyperframe.random/man/dot-rppp.Rd | 31 +-- groupedHyperframe.random-0.3.0/groupedHyperframe.random/man/rfactor.Rd | 6 15 files changed, 84 insertions(+), 120 deletions(-)
More information about groupedHyperframe.random at CRAN
Permanent link
Title: A S3 Class for Vectors of 64bit Integers
Description: Package 'bit64' provides serializable S3 atomic 64bit (signed) integers.
These are useful for handling database keys and exact counting in +-2^63.
WARNING: do not use them as replacement for 32bit integers, integer64 are not
supported for subscripting by R-core and they have different semantics when
combined with double, e.g. integer64 + double => integer64.
Class integer64 can be used in vectors, matrices, arrays and data.frames.
Methods are available for coercion from and to logicals, integers, doubles,
characters and factors as well as many elementwise and summary functions.
Many fast algorithmic operations such as 'match' and 'order' support inter-
active data exploration and manipulation and optionally leverage caching.
Author: Michael Chirico [aut, cre],
Jens Oehlschlaegel [aut],
Leonardo Silvestri [ctb],
Ofek Shilon [ctb],
Christian Ullerich [ctb]
Maintainer: Michael Chirico <michaelchirico4@gmail.com>
Diff between bit64 versions 4.8.0 dated 2026-04-21 and 4.8.2 dated 2026-05-19
DESCRIPTION | 6 +-- MD5 | 24 +++++++------- NAMESPACE | 1 NEWS.md | 8 ++++ R/integer64.R | 8 ++++ R/matrix64.R | 4 ++ R/ops64.R | 67 ++++++++++++++++++++++++++++++++++------ R/zzz.R | 22 ------------- man/matrix64.Rd | 3 + src/sort64.c | 20 ++++++++--- tests/testthat/test-integer64.R | 8 +++- tests/testthat/test-matrix64.R | 3 + tests/testthat/test-ops64.R | 42 +++++++++++++++++++++++++ 13 files changed, 160 insertions(+), 56 deletions(-)
Title: Estimate a Sparse Mixed Frequency Gaussian Factor Model Using a
Two-Step Procedure
Description: Estimate a sparse Gaussian state-space model with mixed frequency
data via sparse principal components analysis and the Kalman filter
and smoother. For more details see Franjic and Schweikert (2024) <doi:10.2139/ssrn.4733872>.
Author: Domenic Franjic [aut, cre]
Maintainer: Domenic Franjic <franjic@uni-hohenheim.de>
Diff between TwoStepSDFM versions 0.2.1 dated 2026-05-11 and 0.2.2 dated 2026-05-19
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 2 +- R/SimFM.r | 5 +++-- README.md | 1 + build/partial.rdb |binary inst/include/Internals/SparseDFM.h | 6 +++--- src/Orders.cpp | 14 +++++++------- src/RWrapperSparsePCA.cpp | 8 ++++---- src/RWrapperTwoStepSDFM.cpp | 6 +++--- 10 files changed, 34 insertions(+), 32 deletions(-)
Title: Concise and Efficient Tools for Everyday Statistical Production
Description: A set of concise and efficient tools for statistical production. Can also be used for data management.
In statistical production, you deal with complex data and need to control your process at each step of your work.
Concise functions are very helpful, because you do not hesitate to use them.
The following functions are included in the package.
'dup' checks duplicates.
'miss' checks missing values.
'tac' computes contingency table of all columns.
'toc' compares two tables, spotting significant deviations.
'chi2_find' compares columns within a data.frame, spotting related categories of (a more complex function).
Author: Vincent Reduron [cre, aut]
Maintainer: Vincent Reduron <vincent.reduron@laposte.net>
Diff between ProduceR versions 1.1 dated 2026-01-16 and 1.2 dated 2026-05-19
DESCRIPTION | 8 +++-- MD5 | 24 +++++++++++------ NEWS.md | 17 ++++++++++++ R/chi2_find.R | 41 +++++++++++++++++++----------- R/doc_base_eu_2024.R |only R/doc_base_eu_2025.R |only R/dup.R | 2 - R/miss.R | 2 + R/tac.R | 68 +++++++++++++++++++++++++++++++++----------------- R/toc.R | 14 +++++----- R/utils.R | 7 ++--- data |only man/base_eu_2024.Rd |only man/base_eu_2025.Rd |only man/get_tac_column.Rd | 4 +- 15 files changed, 126 insertions(+), 61 deletions(-)
Title: LLM Wiki Engine
Description: Personal wiki engine with a large language model (LLM) as
research assistant. Supports guided sessions through a 'Claude Code'
<https://github.com/anthropics/claude-code> skill bundle and
autonomous research runs from R via autoresearch(). Results land in
a structured vault of markdown pages with 'YAML' frontmatter and
wikilinks, ready for hand-editing in your favourite editor
alongside the LLM. Vaults are seeded with 'CLAUDE.md' and
'AGENTS.md' so 'Claude Code', 'Codex'
<https://github.com/openai/codex>, and other agents share the same
operating instructions. Can adopt an existing 'Obsidian'
<https://obsidian.md/> vault in place via init_vault(adopt = TRUE).
Author: Troy Hernandez [aut, cre] ,
cornball.ai [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
This is a re-admission after prior archival of version 0.4.2 dated 2026-05-04
Diff between pensar versions 0.4.2 dated 2026-05-04 and 0.6.3 dated 2026-05-19
DESCRIPTION | 28 +- MD5 | 115 ++++++++--- NAMESPACE | 17 + NEWS.md | 295 ++++++++++++++++++++++++++++++ R/audits.R |only R/autoresearch.R |only R/autoresearch_backends.R |only R/autoresearch_program.R |only R/autoresearch_steps.R |only R/backlinks.R | 32 ++- R/db.R | 80 +++++--- R/export.R | 109 +++-------- R/git.R | 60 +++++- R/index.R | 69 ++++++- R/ingest.R | 32 ++- R/ingest_agent_context.R |only R/ingest_briefing.R | 42 ++-- R/ingest_repo.R |only R/ingest_url.R |only R/lint.R | 87 ++++---- R/manifest.R |only R/migrate.R |only R/outlinks.R | 125 ++++++++++-- R/parse.R | 28 ++ R/pensar-package.R | 5 R/registry.R |only R/retrieval.R |only R/show_page.R | 15 - R/skills.R |only R/status.R | 79 ++++++-- R/vault.R | 285 ++++++++++++++++++---------- R/vault_graph.R | 25 ++ R/wiki_write.R |only README.md | 121 +++++++----- build |only inst/autoresearch |only inst/doc |only inst/skills |only inst/tinytest/fixtures |only inst/tinytest/test_adopt.R |only inst/tinytest/test_adopt_real.R |only inst/tinytest/test_audits.R |only inst/tinytest/test_autoresearch.R |only inst/tinytest/test_ingest_agent_context.R |only inst/tinytest/test_ingest_briefing.R | 22 +- inst/tinytest/test_ingest_repo.R |only inst/tinytest/test_ingest_url.R |only inst/tinytest/test_manifest.R |only inst/tinytest/test_registry.R |only inst/tinytest/test_resolve_vault.R |only inst/tinytest/test_retrieval.R |only inst/tinytest/test_skills.R |only inst/tinytest/test_vault_graph.R | 45 +++- inst/tinytest/test_vault_safety.R |only man/autoresearch.Rd |only man/dedup.Rd |only man/ingest.Rd | 12 - man/ingest_agent_context.Rd |only man/ingest_briefing.Rd | 23 +- man/ingest_repo.Rd |only man/ingest_url.Rd |only man/init_vault.Rd | 34 +++ man/manifest_path.Rd |only man/migrate_briefings_to_repos.Rd |only man/page_context.Rd |only man/pensar-package.Rd | 5 man/pensar_skill_path.Rd |only man/print.pensar_research.Rd |only man/read_manifest.Rd |only man/recent_activity.Rd |only man/related_pages.Rd |only man/search_pages.Rd |only man/status.Rd | 14 + man/tags.Rd |only man/update_manifest.Rd |only man/use_vault.Rd | 3 man/vault_export.Rd | 13 - man/vault_registry.Rd |only vignettes |only 79 files changed, 1354 insertions(+), 466 deletions(-)
Title: Rasch Models -- eXtensions
Description: Extend Rasch and Item Response Theory (IRT) analyses by providing
tools for post-processing the output from five major IRT packages
(i.e., 'eRm', 'psychotools', 'ltm', 'mirt', and 'TAM').
The current version provides the plotPIccc() function, which
extracts from the return object of the originating package all
information required to draw an extended Person-Item-Map (PIccc),
showing any combination of
* category characteristic curves (CCCs),
* threshold characteristic curves (TCCs),
* item characteristic curves (ICCs),
* category information functions (CIFs),
* item information functions (IIFs),
* test information function (TIF), and the
* standard error curve (S.E.).
for uni- and multidimensional models (as far as supported by each
package). It allows for selecting dimensions, items, and categories
to plot and offers numerous options to adapt the output. The return
object contains all calculated values for further processing.
Author: Milica Kabic [aut],
Rainer W. Alexandrowicz [aut, cre]
Maintainer: Rainer W. Alexandrowicz <rainer.alexandrowicz@aau.at>
Diff between RMX versions 0.1-6 dated 2024-09-11 and 0.1-7 dated 2026-05-19
DESCRIPTION | 8 - MD5 | 30 ++--- NAMESPACE | 2 NEWS | 41 ++++--- R/calc_obs.r |only R/calc_smo.r |only R/cleaner.r | 51 +++++++- R/drawer.r | 321 +++++++++++++++++++++++++++++++++++++++---------------- R/drawperson.r | 37 ++++-- R/ext_eRm.r | 23 +++ R/ext_ltm.r | 33 +++++ R/ext_mirt.r | 19 +++ R/ext_psy.r | 18 ++- R/ext_tam.r | 31 +++++ R/piccc.r | 120 +++++++++++++++++--- R/piccc_util.r | 87 ++++++++------ man/plotPIccc.Rd | 91 +++++++++++++-- 17 files changed, 698 insertions(+), 214 deletions(-)
Title: Build Reproducible Analytical Pipelines with 'Nix'
Description: Streamlines the creation of reproducible analytical pipelines using
'default.nix' expressions generated via the 'rix' package for reproducibility. Define
derivations in 'R', 'Python' or 'Julia', chain them into a composition of pure
functions and build the resulting pipeline using 'Nix' as the underlying
end-to-end build tool. Functions to plot the pipeline as a directed acyclic
graph are included, as well as functions to load and inspect intermediary results
for interactive analysis. User experience heavily inspired by the 'targets' package.
Author: Bruno Rodrigues [aut, cre] ,
William Michael Landau [rev]
for rOpenSci, see
<https://github.com/ropensci/software-review/issues/706>),
Anthony Martinez [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/625>)
Maintainer: Bruno Rodrigues <bruno@brodrigues.co>
Diff between rixpress versions 0.12.2 dated 2026-02-19 and 0.12.3 dated 2026-05-19
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/derivs.R | 15 +++++++++++---- R/rxp_chronicler.R | 1 - README.md | 1 + build/vignette.rds |binary tests/testthat/test-derive_r.R | 4 ++-- 8 files changed, 28 insertions(+), 17 deletions(-)
Title: Bayesian Model Averaging for Univariate Link Latent Gaussian
Models
Description: Bayesian model averaging (BMA) algorithms for univariate link latent Gaussian models (ULLGMs). For detailed information, refer to Steel M.F.J. & Zens G. (2024) "Model Uncertainty in Latent Gaussian Models with Univariate Link Function" <doi:10.48550/arXiv.2406.17318>. The package supports various g-priors and a beta-binomial prior on the model space. It also includes auxiliary functions for visualizing and tabulating BMA results. Currently, it offers an out-of-the-box solution for model averaging of Poisson log-normal (PLN) and binomial logistic-normal (BiL) models. The codebase is designed to be easily extendable to other likelihoods, priors, and link functions.
Author: Gregor Zens [aut, cre],
Mark F.J. Steel [aut]
Maintainer: Gregor Zens <zens@iiasa.ac.at>
Diff between LatentBMA versions 0.1.2 dated 2025-04-08 and 0.1.3 dated 2026-05-19
DESCRIPTION | 6 MD5 | 10 R/mcmc.R | 107 ++--- R/utils.R | 778 +++++++++++++++++++-------------------- R/wrapper.R | 320 ++++++++-------- inst/doc/LatentBMA_Vignette.html | 122 +++--- 6 files changed, 679 insertions(+), 664 deletions(-)
Title: Vectorised Computation of P-Values and Their Supports for
Several Discrete Statistical Tests
Description: Provides vectorised functions for computing p-values of various
common discrete statistical tests, as described e.g. in Agresti (2002)
<doi:10.1002/0471249688>, including their distributions. Exact and
approximate computation methods are provided. For exact ones, several
procedures of determining two-sided p-values are included, which are
outlined in more detail in Hirji (2006) <doi:10.1201/9781420036190>.
Author: Florian Junge [cre, aut] ,
Christina Kihn [aut],
Sebastian Doehler [ctb] ,
Guillermo Durand [ctb]
Maintainer: Florian Junge <diso.fbmn@h-da.de>
Diff between DiscreteTests versions 0.3.0 dated 2026-02-16 and 0.4.0 dated 2026-05-19
DESCRIPTION | 10 - MD5 | 55 +++---- NAMESPACE | 3 NEWS.md | 12 + R/DiscreteTests-package.R | 19 ++ R/RcppExports.R | 4 R/binom.R | 148 ++++++++++--------- R/class-results.R | 48 +++--- R/class-summary.R | 2 R/fisher.R | 4 R/mann-whitney.R | 9 - R/mcnemar.R | 37 ++-- R/permutation.r |only R/poisson.R | 2 R/sign.r |only R/wilcoxon.R | 11 - build/partial.rdb |binary man/DiscreteTestResults.Rd | 294 +++++++++++++++++++------------------- man/DiscreteTestResultsSummary.Rd | 142 +++++++++--------- man/DiscreteTests-package.Rd | 22 ++ man/binom_test_pv.Rd | 2 man/fisher_test_pv.Rd | 2 man/homogeneity_test_pv.Rd | 4 man/mann_whitney_test_pv.Rd | 11 - man/mcnemar_test_pv.Rd | 12 - man/perm_test_pv.Rd |only man/poisson_test_pv.Rd | 2 man/sign_test_pv.Rd |only man/wilcox_test_pv.Rd | 11 - src/RcppExports.cpp | 17 ++ src/permutation.cpp |only 31 files changed, 508 insertions(+), 375 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-05 0.8.3
2026-03-23 0.6.2
2026-02-25 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-04 0.4.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-18 0.2.3
2024-08-20 0.2.2
2024-01-24 0.2.1
2023-04-11 0.2.0
2023-01-18 0.1.9
2022-11-28 0.1.8
2022-11-17 0.1.7
2022-06-27 0.1.6
2022-06-05 0.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-30 0.14.4
2025-06-21 0.14.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-04 1.0.0
Title: Core Utilities for Developing and Running Spatially Explicit
Discrete Event Models
Description: Provides the core framework for a discrete event system to
implement a complete data-to-decisions, reproducible workflow.
The core components facilitate the development of modular pieces,
and enable the user to include additional functionality by running user-built modules.
Includes conditional scheduling, restart after interruption, packaging of
reusable modules, tools for developing arbitrary automated workflows,
automated interweaving of modules of different temporal resolution,
and tools for visualizing and understanding the within-project dependencies.
The suggested package 'NLMR' can be installed from the repository
(<https://PredictiveEcology.r-universe.dev>).
Author: Alex M Chubaty [aut] ,
Eliot J B McIntire [aut, cre] ,
Yong Luo [ctb],
Steve Cumming [ctb],
Ceres Barros [ctb] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
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SpaDES.core-3.1.0/SpaDES.core/man/checkObject.Rd | 118 SpaDES.core-3.1.0/SpaDES.core/man/checkParams.Rd | 58 SpaDES.core-3.1.0/SpaDES.core/man/checkpoint.Rd | 182 SpaDES.core-3.1.0/SpaDES.core/man/checksums.Rd | 100 SpaDES.core-3.1.0/SpaDES.core/man/citation.Rd | 80 SpaDES.core-3.1.0/SpaDES.core/man/classFilter.Rd | 162 SpaDES.core-3.1.0/SpaDES.core/man/clearCache.Rd | 254 SpaDES.core-3.1.0/SpaDES.core/man/clearCacheEventsOnly.Rd | 78 SpaDES.core-3.1.0/SpaDES.core/man/codeCheckModule.Rd |only SpaDES.core-3.1.0/SpaDES.core/man/convertToPackage.Rd | 316 SpaDES.core-3.1.0/SpaDES.core/man/copyModule.Rd | 66 SpaDES.core-3.1.0/SpaDES.core/man/coreModules.Rd | 36 SpaDES.core-3.1.0/SpaDES.core/man/createsOutput.Rd | 92 SpaDES.core-3.1.0/SpaDES.core/man/dealWithClass.Rd | 172 SpaDES.core-3.1.0/SpaDES.core/man/defineEvent.Rd | 170 SpaDES.core-3.1.0/SpaDES.core/man/defineModule.Rd | 300 SpaDES.core-3.1.0/SpaDES.core/man/defineParameter.Rd | 214 SpaDES.core-3.1.0/SpaDES.core/man/deprecated.Rd | 102 SpaDES.core-3.1.0/SpaDES.core/man/depsEdgeList.Rd | 80 SpaDES.core-3.1.0/SpaDES.core/man/depsGraph.Rd | 64 SpaDES.core-3.1.0/SpaDES.core/man/depsLoadOrder.Rd | 66 SpaDES.core-3.1.0/SpaDES.core/man/depsPruneEdges.Rd | 52 SpaDES.core-3.1.0/SpaDES.core/man/do.call.Rd | 66 SpaDES.core-3.1.0/SpaDES.core/man/doEvent.Rd | 127 SpaDES.core-3.1.0/SpaDES.core/man/dot-cleanPkgs.Rd | 24 SpaDES.core-3.1.0/SpaDES.core/man/dot-findObjects.Rd | 46 SpaDES.core-3.1.0/SpaDES.core/man/dot-guessPkgFun.Rd | 34 SpaDES.core-3.1.0/SpaDES.core/man/dot-params.Rd | 54 SpaDES.core-3.1.0/SpaDES.core/man/downloadData.Rd | 270 SpaDES.core-3.1.0/SpaDES.core/man/downloadModule.Rd | 200 SpaDES.core-3.1.0/SpaDES.core/man/emptyEventList.Rd | 114 SpaDES.core-3.1.0/SpaDES.core/man/emptyMetadata.Rd | 44 SpaDES.core-3.1.0/SpaDES.core/man/eventDiagram.Rd | 110 SpaDES.core-3.1.0/SpaDES.core/man/expectsInput.Rd | 104 SpaDES.core-3.1.0/SpaDES.core/man/extractURL.Rd | 64 SpaDES.core-3.1.0/SpaDES.core/man/fileEdit.Rd | 44 SpaDES.core-3.1.0/SpaDES.core/man/fileName.Rd | 40 SpaDES.core-3.1.0/SpaDES.core/man/fileTable.Rd | 91 SpaDES.core-3.1.0/SpaDES.core/man/fillInputRows.Rd | 34 SpaDES.core-3.1.0/SpaDES.core/man/fillOutputRows.Rd | 34 SpaDES.core-3.1.0/SpaDES.core/man/findElements.Rd | 120 SpaDES.core-3.1.0/SpaDES.core/man/findModuleName.Rd | 44 SpaDES.core-3.1.0/SpaDES.core/man/findSimList.Rd | 30 SpaDES.core-3.1.0/SpaDES.core/man/ganttStatus.Rd | 52 SpaDES.core-3.1.0/SpaDES.core/man/getModuleInputObjects.Rd | 24 SpaDES.core-3.1.0/SpaDES.core/man/getModuleVersion.Rd | 144 SpaDES.core-3.1.0/SpaDES.core/man/getOption.Rd | 38 SpaDES.core-3.1.0/SpaDES.core/man/getSampleFiles.Rd | 40 SpaDES.core-3.1.0/SpaDES.core/man/globals.Rd | 114 SpaDES.core-3.1.0/SpaDES.core/man/identifyChildModules.Rd | 50 SpaDES.core-3.1.0/SpaDES.core/man/initialize-method.Rd | 46 SpaDES.core-3.1.0/SpaDES.core/man/inputObjectsDF.Rd | 68 SpaDES.core-3.1.0/SpaDES.core/man/isNamespaced.Rd | 24 SpaDES.core-3.1.0/SpaDES.core/man/keepAttrs.Rd | 34 SpaDES.core-3.1.0/SpaDES.core/man/loadFiles.Rd | 204 SpaDES.core-3.1.0/SpaDES.core/man/loadSimList.Rd | 142 SpaDES.core-3.1.0/SpaDES.core/man/makeMemoisable.Rd | 52 SpaDES.core-3.1.0/SpaDES.core/man/maxTimeunit.Rd | 48 SpaDES.core-3.1.0/SpaDES.core/man/memoryUse.Rd | 86 SpaDES.core-3.1.0/SpaDES.core/man/minTimeunit.Rd | 56 SpaDES.core-3.1.0/SpaDES.core/man/modifySearchPath.Rd | 78 SpaDES.core-3.1.0/SpaDES.core/man/moduleCodeFiles.Rd | 54 SpaDES.core-3.1.0/SpaDES.core/man/moduleCoverage.Rd | 84 SpaDES.core-3.1.0/SpaDES.core/man/moduleDefaults.Rd | 33 SpaDES.core-3.1.0/SpaDES.core/man/moduleDeps-class.Rd | 164 SpaDES.core-3.1.0/SpaDES.core/man/moduleDiagram.Rd | 170 SpaDES.core-3.1.0/SpaDES.core/man/moduleGraph.Rd | 80 SpaDES.core-3.1.0/SpaDES.core/man/moduleMetadata.Rd | 158 SpaDES.core-3.1.0/SpaDES.core/man/moduleParamsInputsOuputs.Rd | 118 SpaDES.core-3.1.0/SpaDES.core/man/moduleVersion.Rd | 122 SpaDES.core-3.1.0/SpaDES.core/man/namespacing.Rd | 80 SpaDES.core-3.1.0/SpaDES.core/man/newModule.Rd | 322 SpaDES.core-3.1.0/SpaDES.core/man/newModuleTests.Rd | 76 SpaDES.core-3.1.0/SpaDES.core/man/newProject.Rd | 78 SpaDES.core-3.1.0/SpaDES.core/man/newProjectCode.Rd | 56 SpaDES.core-3.1.0/SpaDES.core/man/noEventWarning.Rd | 34 SpaDES.core-3.1.0/SpaDES.core/man/objSize.simList.Rd | 72 SpaDES.core-3.1.0/SpaDES.core/man/objectDiagram.Rd | 86 SpaDES.core-3.1.0/SpaDES.core/man/objectSynonyms.Rd | 154 SpaDES.core-3.1.0/SpaDES.core/man/objects.Rd | 172 SpaDES.core-3.1.0/SpaDES.core/man/openModules.Rd | 108 SpaDES.core-3.1.0/SpaDES.core/man/packages.Rd | 122 SpaDES.core-3.1.0/SpaDES.core/man/paramCheckOtherMods.Rd | 104 SpaDES.core-3.1.0/SpaDES.core/man/params.Rd | 246 SpaDES.core-3.1.0/SpaDES.core/man/parseElems.Rd | 48 SpaDES.core-3.1.0/SpaDES.core/man/parseMessage.Rd | 42 SpaDES.core-3.1.0/SpaDES.core/man/parseModule.Rd | 150 SpaDES.core-3.1.0/SpaDES.core/man/pkgEnv.Rd | 28 SpaDES.core-3.1.0/SpaDES.core/man/preDigestByClass.Rd | 52 SpaDES.core-3.1.0/SpaDES.core/man/prepareOutput.Rd | 50 SpaDES.core-3.1.0/SpaDES.core/man/priority.Rd | 60 SpaDES.core-3.1.0/SpaDES.core/man/progress.Rd | 196 SpaDES.core-3.1.0/SpaDES.core/man/progressBar.Rd | 52 SpaDES.core-3.1.0/SpaDES.core/man/quickCheck.Rd | 31 SpaDES.core-3.1.0/SpaDES.core/man/rasterCreate.Rd | 62 SpaDES.core-3.1.0/SpaDES.core/man/rasterToMemory.Rd | 80 SpaDES.core-3.1.0/SpaDES.core/man/reexports.Rd | 32 SpaDES.core-3.1.0/SpaDES.core/man/remoteFileSize.Rd | 40 SpaDES.core-3.1.0/SpaDES.core/man/restartR.Rd | 192 SpaDES.core-3.1.0/SpaDES.core/man/restartSpades.Rd | 198 SpaDES.core-3.1.0/SpaDES.core/man/rndstr.Rd | 132 SpaDES.core-3.1.0/SpaDES.core/man/robustDigest.Rd | 104 SpaDES.core-3.1.0/SpaDES.core/man/runCodeChecks.Rd | 55 SpaDES.core-3.1.0/SpaDES.core/man/runModuleInputsObjects.Rd | 38 SpaDES.core-3.1.0/SpaDES.core/man/saveFiles.Rd | 212 SpaDES.core-3.1.0/SpaDES.core/man/saveSimList.Rd | 200 SpaDES.core-3.1.0/SpaDES.core/man/savedSimEnv.Rd | 32 SpaDES.core-3.1.0/SpaDES.core/man/scheduleConditionalEvent.Rd | 175 SpaDES.core-3.1.0/SpaDES.core/man/scheduleEvent.Rd | 141 SpaDES.core-3.1.0/SpaDES.core/man/setPaths.Rd | 199 SpaDES.core-3.1.0/SpaDES.core/man/show-method.Rd | 34 SpaDES.core-3.1.0/SpaDES.core/man/sim2gantt.Rd | 68 SpaDES.core-3.1.0/SpaDES.core/man/simDeps-class.Rd | 46 SpaDES.core-3.1.0/SpaDES.core/man/simFile.Rd | 46 SpaDES.core-3.1.0/SpaDES.core/man/simInit.Rd | 837 - SpaDES.core-3.1.0/SpaDES.core/man/simInitAndSpades.Rd | 290 SpaDES.core-3.1.0/SpaDES.core/man/simList-accessors-envir.Rd | 112 SpaDES.core-3.1.0/SpaDES.core/man/simList-accessors-events.Rd | 226 SpaDES.core-3.1.0/SpaDES.core/man/simList-accessors-inputs.Rd | 436 SpaDES.core-3.1.0/SpaDES.core/man/simList-accessors-metadata.Rd | 150 SpaDES.core-3.1.0/SpaDES.core/man/simList-accessors-modules.Rd | 146 SpaDES.core-3.1.0/SpaDES.core/man/simList-accessors-objects.Rd | 40 SpaDES.core-3.1.0/SpaDES.core/man/simList-accessors-outputs.Rd | 425 SpaDES.core-3.1.0/SpaDES.core/man/simList-accessors-paths.Rd | 356 SpaDES.core-3.1.0/SpaDES.core/man/simList-accessors-times.Rd | 368 SpaDES.core-3.1.0/SpaDES.core/man/simList-class.Rd | 241 SpaDES.core-3.1.0/SpaDES.core/man/spades-classes.Rd | 50 SpaDES.core-3.1.0/SpaDES.core/man/spades.Rd | 563 SpaDES.core-3.1.0/SpaDES.core/man/spadesOptions.Rd | 436 SpaDES.core-3.1.0/SpaDES.core/man/spadesTime.Rd | 162 SpaDES.core-3.1.0/SpaDES.core/man/suppliedElsewhere.Rd | 156 SpaDES.core-3.1.0/SpaDES.core/man/tagsByClass.Rd | 42 SpaDES.core-3.1.0/SpaDES.core/man/timeConversion.Rd | 151 SpaDES.core-3.1.0/SpaDES.core/man/tryCatch.Rd | 24 SpaDES.core-3.1.0/SpaDES.core/man/unparsed.Rd | 48 SpaDES.core-3.1.0/SpaDES.core/man/updateList.Rd | 46 SpaDES.core-3.1.0/SpaDES.core/man/use_gha.Rd | 38 SpaDES.core-3.1.0/SpaDES.core/man/verb.Rd | 36 SpaDES.core-3.1.0/SpaDES.core/man/writeEventInfo.Rd | 48 SpaDES.core-3.1.0/SpaDES.core/man/writeRNGInfo.Rd | 44 SpaDES.core-3.1.0/SpaDES.core/man/zipModule.Rd | 88 SpaDES.core-3.1.0/SpaDES.core/tests/test-all.R | 22 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/fixtures |only SpaDES.core-3.1.0/SpaDES.core/tests/testthat/helper-initTests.R | 537 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-1memory.R | 90 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-Copy.R | 42 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-Plots.R | 634 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-cache.R | 1513 +- SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-checkpoint.R | 252 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-codecheck.R |only SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-conditionalEvents.R | 168 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-downloadData.R | 170 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-downloadModule.R | 294 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-environment.R | 14 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-futureEvents.R | 220 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-load.R | 964 - SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-malformed-metadata.R |only SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-misc.R | 276 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-mod.R | 696 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-module-deps-methods.R | 544 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-module-template.R | 376 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-multipleModulePaths.R | 220 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-objectSynonyms.R | 330 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-paths.R | 260 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-save.R | 1045 - SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-saveLoadLazy.R |only SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-simList.R | 1110 - SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-simulation.R | 2303 +-- SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-timeunits.R | 582 SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-unwrapResiliently.R |only SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-useCacheArgs.R |only SpaDES.core-3.1.0/SpaDES.core/tests/testthat/test-userSuppliedObjs.R | 140 SpaDES.core-3.1.0/SpaDES.core/vignettes/bibliography.bib | 268 SpaDES.core-3.1.0/SpaDES.core/vignettes/i-introduction.Rmd | 748 - SpaDES.core-3.1.0/SpaDES.core/vignettes/ii-modules.Rmd | 1597 +- SpaDES.core-3.1.0/SpaDES.core/vignettes/iii-cache.Rmd | 563 SpaDES.core-3.1.0/SpaDES.core/vignettes/iv-advanced.Rmd | 166 SpaDES.core-3.1.0/SpaDES.core/vignettes/v-automated-testing.Rmd | 174 305 files changed, 51508 insertions(+), 50674 deletions(-)
Title: Relational Data Modeler
Description: The aim of this package is to manipulate relational
data models in R.
It provides functions to create, modify and export data models
in json format.
It also allows importing models created
with 'MySQL Workbench' (<https://www.mysql.com/products/workbench/>).
These functions are accessible through a graphical user
interface made with 'shiny'.
Constraints such as types, keys, uniqueness and mandatory fields are
automatically checked and corrected when editing a model.
Finally, real data can be confronted to a model to check their compatibility.
Author: Patrice Godard [aut, cre, cph],
Kai Lin [ctb]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between ReDaMoR versions 0.8.2 dated 2025-02-21 and 1.0.0 dated 2026-05-19
DESCRIPTION | 12 MD5 | 75 NAMESPACE | 2 R/PCKRESERVED.R | 12 R/RelDataModel.R | 3049 ++++++++-------- R/RelTableModel.R | 1554 ++++---- R/TYPEDEF.R | 290 - R/df_to_model.R | 357 - R/format_confrontation_report.R | 891 ++-- R/generics.R | 13 R/json_data_model.R | 123 R/model_relational_data.R | 6331 +++++++++++++++++----------------- R/named_MM.R | 151 R/namespace.R | 1 R/plot.RelDataModel.R | 532 +- R/readSQLDataModel.R | 663 +-- build/vignette.rds |binary inst/doc/ReDaMoR.R | 18 inst/doc/ReDaMoR.Rmd | 40 inst/doc/ReDaMoR.html | 66 inst/examples/ex_confront.R | 20 inst/examples/ex_from_df.R | 19 inst/examples/ex_plot_model.R | 2 inst/examples/ex_read_json.R | 14 inst/examples/ex_read_sql.R | 14 inst/pkgdown.yml | 6 man/RelDataModel.Rd | 5 man/SUPPTYPES.Rd | 5 man/confront_data.Rd | 14 man/correct_constraints.Rd | 5 man/df_to_model.Rd | 19 man/format_confrontation_report.Rd | 20 man/format_confrontation_report_md.Rd | 20 man/guess_constraints.Rd | 19 man/order_indexes.Rd |only man/plot.RelDataModel.Rd | 2 man/read_SQL_data_model.Rd | 14 man/read_json_data_model.Rd | 14 vignettes/ReDaMoR.Rmd | 40 39 files changed, 7569 insertions(+), 6863 deletions(-)
Title: Object Pooling
Description: Enables the creation of object pools, which make it less
computationally expensive to fetch a new object. Currently the only
supported pooled objects are 'DBI' connections.
Author: Joe Cheng [aut],
Barbara Borges [aut],
Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between pool versions 1.0.4 dated 2024-10-07 and 1.0.5 dated 2026-05-19
DESCRIPTION | 8 +- MD5 | 43 +++++----- NEWS.md | 4 + R/DBI.R | 19 ++-- R/compat-s3-register.R | 14 ++- R/dbplyr.R | 27 +++++- R/hooks.R | 51 ++++++------ R/pool-methods.R | 16 ++-- R/pool.R | 156 +++++++++++++++++++++------------------ R/scheduler.R | 3 R/utils.R | 10 +- README.md | 2 build/vignette.rds |binary inst/doc/why-pool.html | 5 - man/DBI-custom.Rd | 2 man/pool-package.Rd | 1 man/reexports.Rd | 2 tests/testthat/_snaps/hooks.md |only tests/testthat/helper-mock.R | 15 ++- tests/testthat/test-DBI-custom.R | 19 ++-- tests/testthat/test-dbplyr.R | 21 ++++- tests/testthat/test-hooks.R | 14 +++ tests/testthat/test-pool.R | 1 23 files changed, 257 insertions(+), 176 deletions(-)
Title: Kernel Density and Local Polynomial Regression Methods
Description: Estimation, inference, bandwidth selection, and graphical procedures for kernel density and local polynomial regression methods, including robust bias-corrected confidence intervals as described in Calonico, Cattaneo and Farrell (2018, <doi:10.1080/01621459.2017.1285776>). The package includes 'lprobust()' for local polynomial point estimation and robust bias-corrected inference, 'lpbwselect()' for local polynomial bandwidth selection, 'kdrobust()' for kernel density point estimation and robust bias-corrected inference, 'kdbwselect()' for kernel density bandwidth selection, and 'nprobust.plot()' for plotting results. The main methodological and numerical features are described in Calonico, Cattaneo and Farrell (2019, <doi:10.18637/jss.v091.i08>).
Author: Sebastian Calonico [aut, cre],
Matias D. Cattaneo [aut],
Max H. Farrell [aut]
Maintainer: Sebastian Calonico <scalonico@ucdavis.edu>
Diff between nprobust versions 0.5.0 dated 2025-04-14 and 1.0.0 dated 2026-05-19
nprobust-0.5.0/nprobust/R/RcppExports.R |only nprobust-0.5.0/nprobust/src |only nprobust-1.0.0/nprobust/DESCRIPTION | 31 nprobust-1.0.0/nprobust/MD5 | 58 nprobust-1.0.0/nprobust/NAMESPACE | 52 nprobust-1.0.0/nprobust/R/kdbwselect.R | 643 +++++---- nprobust-1.0.0/nprobust/R/kdrobust.R | 454 +++--- nprobust-1.0.0/nprobust/R/lpbwselect.R | 591 +++++--- nprobust-1.0.0/nprobust/R/lprobust.R | 1063 +++++++++------ nprobust-1.0.0/nprobust/R/npfunctions.R | 1605 +++++++++++++----------- nprobust-1.0.0/nprobust/R/nprobust.plot.R | 406 +++--- nprobust-1.0.0/nprobust/R/tidy.R |only nprobust-1.0.0/nprobust/README.md |only nprobust-1.0.0/nprobust/build/partial.rdb |binary nprobust-1.0.0/nprobust/inst/CITATION | 40 nprobust-1.0.0/nprobust/man/kdbwselect.Rd | 35 nprobust-1.0.0/nprobust/man/kdrobust.Rd | 48 nprobust-1.0.0/nprobust/man/lpbwselect.Rd | 65 nprobust-1.0.0/nprobust/man/lprobust.Rd | 77 - nprobust-1.0.0/nprobust/man/nprobust-package.Rd | 22 nprobust-1.0.0/nprobust/man/nprobust.plot.Rd | 206 +-- nprobust-1.0.0/nprobust/tests |only 22 files changed, 3035 insertions(+), 2361 deletions(-)
Title: Methods for Visualization of Computer Experiments Design and
Surrogate
Description: View 2D/3D sections, contour plots, mesh of excursion sets for computer experiments designs, surrogates or test functions.
Author: Yann Richet [aut, cre] ,
Yves Deville [aut],
Clement Chevalier [ctb]
Maintainer: Yann Richet <yann.richet@asnr.fr>
Diff between DiceView versions 3.1-3 dated 2025-06-13 and 3.2 dated 2026-05-19
DESCRIPTION | 14 +++---- MD5 | 30 +++++++-------- NAMESPACE | 12 ++---- R/contourview.R | 92 +++++++++-------------------------------------- R/filledcontourview.R | 92 +++++++++-------------------------------------- R/optim.R | 4 +- R/root.R | 2 - R/sectionview.R | 78 +++++++++------------------------------ R/sectionview3d.R | 81 ++++++++++------------------------------- man/contourview.Rd | 60 ++++-------------------------- man/filledcontourview.Rd | 60 ++++-------------------------- man/optim.stop.Rd | 2 - man/optims.Rd | 2 - man/root.Rd | 2 - man/sectionview.Rd | 55 ++++------------------------ man/sectionview3d.Rd | 56 ++++------------------------ 16 files changed, 143 insertions(+), 499 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A large C/C++-based package for advanced data transformation and
statistical computing in R that is extremely fast, class-agnostic, robust, and
programmer friendly. Core functionality includes a rich set of S3 generic grouped
and weighted statistical functions for vectors, matrices and data frames, which
provide efficient low-level vectorizations, OpenMP multithreading, and skip missing
values by default. These are integrated with fast grouping and ordering algorithms
(also callable from C), and efficient data manipulation functions. The package also
provides a flexible and rigorous approach to time series and panel data in R, fast
functions for data transformation and common statistical procedures, detailed
(grouped, weighted) summary statistics, powerful tools to work with nested data,
fast data object conversions, functions for memory efficient R programming, and
helpers to effectively deal with variable labels, attributes, and missing data. It
seamlessly supports base R objects/cla [...truncated...]
Author: Sebastian Krantz [aut, cre] ,
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
Alina Cherkas [ctb],
Ivan Krylov [ctb],
R Core Team and contributors worldwide [ctb],
Martyn P [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 2.1.6 dated 2026-01-11 and 2.1.7 dated 2026-05-19
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Title: AMCE Estimator for Conjoint Experiments
Description: An R implementation of the Average Marginal Component-specific
Effects (AMCE) estimator presented in Hainmueller, J., Hopkins, D., and Yamamoto
T. (2014) <DOI:10.1093/pan/mpt024> Causal Inference in Conjoint Analysis: Understanding Multi-Dimensional
Choices via Stated Preference Experiments. Political Analysis 22(1):1-30.
Author: Soubhik Barari [aut],
Elissa Berwick [aut],
Jens Hainmueller [aut],
Daniel Hopkins [aut],
Sean Liu [aut],
Anton Strezhnev [aut, cre],
Teppei Yamamoto [aut]
Maintainer: Anton Strezhnev <strezhnev@wisc.edu>
Diff between cjoint versions 2.1.1 dated 2023-08-22 and 2.1.3 dated 2026-05-19
cjoint-2.1.1/cjoint/R/test_data |only cjoint-2.1.3/cjoint/DESCRIPTION | 29 ++++++++++++++++++++------- cjoint-2.1.3/cjoint/MD5 | 13 ++++++------ cjoint-2.1.3/cjoint/NAMESPACE | 11 +++------- cjoint-2.1.3/cjoint/R/cjoint.R | 13 +++++++++--- cjoint-2.1.3/cjoint/README.md |only cjoint-2.1.3/cjoint/man/cjoint-package.Rd | 4 +-- cjoint-2.1.3/cjoint/tests/testthat/test_data |only 8 files changed, 45 insertions(+), 25 deletions(-)