Title: Gaussian and Student-t Copula Models for Count Time Series
Description: Provides likelihood-based inference for Gaussian and Student-t
copula models for univariate count time series. Supports Poisson,
negative binomial, binomial, beta-binomial, and zero-inflated
marginals with ARMA dependence structures. Includes simulation,
maximum-likelihood estimation, residual diagnostics, and predictive
inference. Implements Time Series Minimax Exponential Tilting (TMET)
<doi:10.1016/j.csda.2026.108344>, an adaptation of minimax exponential
tilting of Botev (2017) <doi:10.1111/rssb.12162>. Also provides a
linear-cost implementation of the Geweke–Hajivassiliou–Keane (GHK)
simulator following Masarotto and Varin (2012) <doi:10.1214/12-EJS721>,
and the Continuous Extension (CE) approximation of Nguyen and
De Oliveira (2025) <doi:10.1080/02664763.2025.2498502>. The package
follows the S3 design philosophy of 'gcmr' but is developed independently.
Author: Quynh Nguyen [aut, cre],
Victor De Oliveira [aut]
Maintainer: Quynh Nguyen <nqnhu2209@gmail.com>
Diff between gctsc versions 0.2.3 dated 2026-03-20 and 0.2.4 dated 2026-05-20
gctsc-0.2.3/gctsc/R/loglik_factory.R |only gctsc-0.2.3/gctsc/R/marg_utils.R |only gctsc-0.2.3/gctsc/R/sample_utils.R |only gctsc-0.2.3/gctsc/R/validate-utils.R |only gctsc-0.2.3/gctsc/inst/Gaussian_copula_examples |only gctsc-0.2.3/gctsc/inst/t_copula_examples |only gctsc-0.2.3/gctsc/man/pmv_ce.Rd |only gctsc-0.2.3/gctsc/man/pmv_ghk.Rd |only gctsc-0.2.3/gctsc/man/pmv_tmet.Rd |only gctsc-0.2.4/gctsc/DESCRIPTION | 8 gctsc-0.2.4/gctsc/MD5 | 110 +- gctsc-0.2.4/gctsc/NAMESPACE | 18 gctsc-0.2.4/gctsc/R/arma-helpers.R | 2 gctsc-0.2.4/gctsc/R/cond_mv.R | 160 ++-- gctsc-0.2.4/gctsc/R/gctsc-examples.R |only gctsc-0.2.4/gctsc/R/gctsc-package.R |only gctsc-0.2.4/gctsc/R/loglik_ce.R | 172 ---- gctsc-0.2.4/gctsc/R/loglik_ghk.R | 221 +---- gctsc-0.2.4/gctsc/R/loglik_tmet.R | 227 +----- gctsc-0.2.4/gctsc/R/main.R | 829 +++++++++++++++------- gctsc-0.2.4/gctsc/R/marginals.R | 784 ++++++++++++++------ gctsc-0.2.4/gctsc/R/methods-print.R | 39 - gctsc-0.2.4/gctsc/R/pmvn.R |only gctsc-0.2.4/gctsc/R/pmvt.R |only gctsc-0.2.4/gctsc/R/prediction.R | 652 ++++++++--------- gctsc-0.2.4/gctsc/R/residuals.R | 253 +++--- gctsc-0.2.4/gctsc/R/sim-utils.R | 326 +++----- gctsc-0.2.4/gctsc/R/simulate-gctsc.R | 234 ++++++ gctsc-0.2.4/gctsc/R/tmet_t_solver.R | 2 gctsc-0.2.4/gctsc/README.md | 68 - gctsc-0.2.4/gctsc/build/partial.rdb |only gctsc-0.2.4/gctsc/inst/doc/gctsc_vignette.R | 30 gctsc-0.2.4/gctsc/inst/doc/gctsc_vignette.Rmd | 32 gctsc-0.2.4/gctsc/inst/doc/gctsc_vignette.html | 232 +++--- gctsc-0.2.4/gctsc/inst/examples |only gctsc-0.2.4/gctsc/man/gctsc-examples.Rd |only gctsc-0.2.4/gctsc/man/gctsc-package.Rd |only gctsc-0.2.4/gctsc/man/gctsc.Rd | 237 +++--- gctsc-0.2.4/gctsc/man/gctsc.opts.Rd | 33 gctsc-0.2.4/gctsc/man/marginal.gctsc.Rd | 103 +- gctsc-0.2.4/gctsc/man/plot.gctsc.Rd | 5 gctsc-0.2.4/gctsc/man/pmvn.Rd |only gctsc-0.2.4/gctsc/man/pmvt.Rd |only gctsc-0.2.4/gctsc/man/predict.gctsc.Rd | 130 ++- gctsc-0.2.4/gctsc/man/residuals.gctsc.Rd | 50 - gctsc-0.2.4/gctsc/man/sim_gctsc.Rd | 408 +++++----- gctsc-0.2.4/gctsc/src/RcppExports.cpp | 10 gctsc-0.2.4/gctsc/src/kernel_mvn.cpp | 248 +++--- gctsc-0.2.4/gctsc/src/kernel_mvt.cpp | 151 ++-- gctsc-0.2.4/gctsc/src/loglik_ce.cpp | 7 gctsc-0.2.4/gctsc/tests/testthat/test-marginals.R | 4 gctsc-0.2.4/gctsc/vignettes/gctsc_vignette.Rmd | 32 52 files changed, 3252 insertions(+), 2565 deletions(-)
Title: Extracts the Backbone from Networks
Description: An implementation of methods for extracting a sparse unweighted network (i.e. a backbone)
from an unweighted network (e.g., Hamann et al., 2016 <doi:10.1007/s13278-016-0332-2>), a weighted network
(e.g., Serrano et al., 2009 <doi:10.1073/pnas.0808904106>), or a weighted projection (e.g., Neal et al., 2021
<doi:10.1038/s41598-021-03238-3>).
Author: Zachary Neal [aut, cre] ,
Rachel Domagalski [ctb],
Bruce Sagan [ctb],
Karl Godard [ctb]
Maintainer: Zachary Neal <zpneal@msu.edu>
Diff between backbone versions 3.0.3 dated 2025-12-08 and 3.0.4 dated 2026-05-20
DESCRIPTION | 9 +- MD5 | 46 +++++++------- NEWS.md | 9 ++ R/backbone.R | 2 R/backbone_from_projection.R | 49 ++++++++++++++- R/backbone_from_unweighted.R | 42 ++++++++++++- R/backbone_from_weighted.R | 43 ++++++++++++- R/functions_projection.R | 12 +-- R/functions_util.R | 127 ---------------------------------------- R/functions_weighted.R | 8 +- README.md | 6 - build/vignette.rds |binary inst/CITATION | 12 +-- inst/doc/backbone.Rmd | 6 - inst/doc/backbone.html | 83 ++++++++++++-------------- inst/doc/senate.Rmd | 6 - inst/doc/senate.html | 72 +++++++++++----------- man/backbone.Rd | 2 man/backbone_from_projection.Rd | 2 man/backbone_from_unweighted.Rd | 2 man/backbone_from_weighted.Rd | 2 vignettes/backbone.Rmd | 6 - vignettes/backbone_bib.bib | 8 +- vignettes/senate.Rmd | 6 - 24 files changed, 275 insertions(+), 285 deletions(-)
Title: Linear and Nonlinear Methods for Analyzing Daily and Monthly
Dendroclimatological Data
Description: Provides novel dendroclimatological methods, primarily used by the
Tree-ring research community. There are four core functions. The first one is
daily_response(), which finds the optimal sequence of days that are related
to one or more tree-ring proxy records. Similar function is daily_response_seascorr(),
which implements partial correlations in the analysis of daily response functions.
For the enthusiast of monthly data, there is monthly_response() function.
The last core function is compare_methods(), which effectively compares several
linear and nonlinear regression algorithms on the task of climate reconstruction.
Author: Jernej Jevsenak [aut, cre]
Maintainer: Jernej Jevsenak <jernej.jevsenak@gmail.com>
Diff between dendroTools versions 1.2.15 dated 2025-07-18 and 1.2.16 dated 2026-05-20
DESCRIPTION | 6 MD5 | 40 NEWS.md | 17 R/daily_response.R | 3067 +++++++++++---------- R/daily_response_seascorr.R | 2226 +++++++-------- R/generics.R | 612 ++-- R/monthly_response.R | 2890 ++++++++++--------- R/monthly_response_seascorr.R | 2135 +++++++------- R/plot_extreme.R | 991 +++--- R/plot_heatmap.R | 488 +-- build/vignette.rds |binary inst/doc/Compare_different_regression_methods.html | 185 - inst/doc/Examples_with_daily_climate_data.html | 60 inst/doc/Modify_plots_with_ggplot.R |only inst/doc/Modify_plots_with_ggplot.Rmd |only inst/doc/Modify_plots_with_ggplot.html |only man/daily_response.Rd | 82 man/daily_response_seascorr.Rd | 77 man/monthly_response.Rd | 70 man/monthly_response_seascorr.Rd | 65 man/plot_extreme.Rd | 60 man/plot_heatmap.Rd | 64 vignettes/Modify_plots_with_ggplot.Rmd |only 23 files changed, 6897 insertions(+), 6238 deletions(-)
Title: Orchestration of Data Pipelines
Description: Framework for creating and orchestrating data pipelines. Organize, orchestrate, and monitor multiple pipelines in a single project. Use tags to decorate functions with scheduling parameters and configuration.
Author: Will Hipson [cre, aut, cph] ,
Ryan Garnett [aut, ctb, cph]
Maintainer: Will Hipson <will.e.hipson@gmail.com>
Diff between maestro versions 1.1.0 dated 2026-04-20 and 1.1.1 dated 2026-05-20
DESCRIPTION | 8 MD5 | 32 - NEWS.md | 8 R/MaestroPipeline.R | 39 + R/get_run_sequence.R | 4 build/vignette.rds |binary inst/doc/maestro-1-quick-start.html | 4 inst/doc/maestro-3-advanced-scheduling.html | 8 inst/doc/maestro-4-directed-acyclic-graphs.html | 22 inst/doc/maestro-5-logging.html | 66 +- inst/doc/maestro-8-conditionals.html | 38 - man/MaestroPipeline.Rd | 656 ++++++++++++------------ man/MaestroPipelineList.Rd | 655 ++++++++++++----------- man/MaestroSchedule.Rd | 321 ++++++----- man/get_run_sequence.Rd | 4 man/maestro.Rd | 1 tests/testthat/test-run_schedule.R | 110 ++++ 17 files changed, 1093 insertions(+), 883 deletions(-)
Title: Methods for ''A Fast Alternative for the R x C Ecological
Inference Case''
Description: Estimates the probability matrix for the R×C Ecological Inference problem using the Expectation-Maximization Algorithm with four approximation methods for the E-Step, and an exact method as well. It also provides a bootstrap function to estimate the standard deviation of the estimated probabilities. In addition, it has functions that aggregate rows optimally to have more reliable estimates in cases of having few data points. For comparing the probability estimates of two groups, a Wald test routine is implemented. The library has data from the first round of the Chilean Presidential Election 2021 and can also generate synthetic election data. Methods described in Thraves, Charles; Ubilla, Pablo; Hermosilla, Daniel (2024) ''A Fast Ecological Inference Algorithm for the R×C case'' <doi:10.2139/ssrn.4832834>.
Author: Charles Thraves [aut] ,
Pablo Ubilla [aut] ,
Daniel Hermosilla [aut, cre]
Maintainer: Daniel Hermosilla <daniel.hermosilla.r@ug.uchile.cl>
Diff between fastei versions 0.0.16 dated 2026-05-08 and 0.0.19 dated 2026-05-20
DESCRIPTION | 6 +-- MD5 | 8 ++-- inst/doc/demonstration.html | 4 +- src/main_symmetric.c | 85 +++++++++++++++++++++++++++++--------------- src/wrapper.cpp | 6 +-- 5 files changed, 69 insertions(+), 40 deletions(-)
Title: F1 Pit Stop Datasets
Description: Formula 1 pit stop data. The package provides information on teams and drivers across seasons (2019 or higher). It also includes a function to visualize pit stop performance.
Author: Jose Jordan-Soria [aut, cre]
Maintainer: Jose Jordan-Soria <jjose.jjordan@gmail.com>
Diff between f1pits versions 1.3.0 dated 2026-05-11 and 1.3.1 dated 2026-05-20
DESCRIPTION | 6 MD5 | 25 +-- NEWS.md | 12 + R/pitchamp.R | 2 R/pitelo.R | 174 +++++++++++++++++++----- R/pitplot.R | 6 R/pits.R | 15 ++ build/partial.rdb |only inst/doc/f1pits-intro.R | 27 ++- inst/doc/f1pits-intro.Rmd | 37 +++-- inst/doc/f1pits-intro.html | 319 ++++++++++++++++++++++----------------------- man/pitchamp.Rd | 2 man/pitelo.Rd | 59 +++++++- vignettes/f1pits-intro.Rmd | 37 +++-- 14 files changed, 461 insertions(+), 260 deletions(-)
Title: Phylogenetic Tree Statistics
Description: Collection of phylogenetic tree statistics,
collected throughout the literature. All functions have been
written to maximize computation speed. The package includes
umbrella functions to calculate all statistics, all balance
associated statistics, or all branching time related statistics.
Furthermore, the 'treestats' package supports summary statistic
calculations on Ltables, provides speed-improved coding of
branching times, Ltable conversion and includes algorithms to
create intermediately balanced trees. Full description can be
found in Janzen (2024) <doi:10.1016/j.ympev.2024.108168>.
Author: Thijs Janzen [cre, aut]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between treestats versions 1.70.8 dated 2025-11-12 and 1.70.11 dated 2026-05-20
treestats-1.70.11/treestats/DESCRIPTION | 13 - treestats-1.70.11/treestats/MD5 | 104 +++++----- treestats-1.70.11/treestats/NEWS.md | 50 +++-- treestats-1.70.11/treestats/R/RcppExports.R | 20 ++ treestats-1.70.11/treestats/R/average_leaf_depth.R | 3 treestats-1.70.11/treestats/R/calc_all_stats.R | 38 ++- treestats-1.70.11/treestats/R/calc_brts_stats.R | 1 treestats-1.70.11/treestats/R/crown_age.R | 2 treestats-1.70.11/treestats/R/eigen_centrality.R | 52 ++--- treestats-1.70.11/treestats/R/gamma.R | 6 treestats-1.70.11/treestats/R/list_statistics.R | 1 treestats-1.70.11/treestats/R/max_closeness.R | 5 treestats-1.70.11/treestats/R/mean_branch_length.R | 28 +- treestats-1.70.11/treestats/R/minmax_adj.R | 118 ++++++++--- treestats-1.70.11/treestats/R/minmax_laplace.R | 120 ++++++++---- treestats-1.70.11/treestats/R/rebase_ltable.R | 5 treestats-1.70.11/treestats/R/rpanda.R | 1 treestats-1.70.11/treestats/R/treeness.R | 5 treestats-1.70.11/treestats/README.md | 2 treestats-1.70.11/treestats/build/vignette.rds |binary treestats-1.70.11/treestats/inst/doc/Correlations.R |only treestats-1.70.11/treestats/inst/doc/Correlations.Rmd |only treestats-1.70.11/treestats/inst/doc/Correlations.html |only treestats-1.70.11/treestats/inst/doc/Getting_started.R | 1 treestats-1.70.11/treestats/inst/doc/Getting_started.Rmd | 1 treestats-1.70.11/treestats/inst/doc/Getting_started.html | 28 +- treestats-1.70.11/treestats/inst/doc/Speed_improvement.html | 10 - treestats-1.70.11/treestats/inst/doc/Tree_size.R |only treestats-1.70.11/treestats/inst/doc/Tree_size.Rmd |only treestats-1.70.11/treestats/inst/doc/Tree_size.html |only treestats-1.70.11/treestats/inst/include/branch_colless.h |only treestats-1.70.11/treestats/inst/include/mpd.h | 110 +++++++++++ treestats-1.70.11/treestats/man/average_leaf_depth.Rd | 6 treestats-1.70.11/treestats/man/calc_all_stats.Rd | 5 treestats-1.70.11/treestats/man/eigen_centrality.Rd | 2 treestats-1.70.11/treestats/man/mean_branch_length.Rd | 2 treestats-1.70.11/treestats/man/mean_branch_length_ext.Rd | 3 treestats-1.70.11/treestats/man/mean_branch_length_int.Rd | 3 treestats-1.70.11/treestats/man/minmax_adj.Rd | 9 treestats-1.70.11/treestats/man/minmax_laplace.Rd | 10 - treestats-1.70.11/treestats/man/rebase_ltable.Rd | 7 treestats-1.70.11/treestats/man/var_branch_length.Rd | 3 treestats-1.70.11/treestats/man/var_branch_length_ext.Rd | 3 treestats-1.70.11/treestats/man/var_branch_length_int.Rd | 7 treestats-1.70.11/treestats/src/RcppExports.cpp | 69 ++++++ treestats-1.70.11/treestats/src/beta.cpp | 4 treestats-1.70.11/treestats/src/brts.cpp | 2 treestats-1.70.11/treestats/src/ladder.cpp | 4 treestats-1.70.11/treestats/src/laplacian.cpp | 27 ++ treestats-1.70.11/treestats/src/mpd.cpp | 20 +- treestats-1.70.11/treestats/src/phylo.cpp | 11 + treestats-1.70.11/treestats/src/rspectra_helpers.cpp |only treestats-1.70.11/treestats/tests/testthat/test-allstats.R | 6 treestats-1.70.11/treestats/vignettes/Correlations.Rmd |only treestats-1.70.11/treestats/vignettes/Getting_started.Rmd | 1 treestats-1.70.11/treestats/vignettes/Tree_size.Rmd |only treestats-1.70.8/treestats/inst/doc/Example_data.R |only treestats-1.70.8/treestats/inst/doc/Example_data.Rmd |only treestats-1.70.8/treestats/inst/doc/Example_data.html |only treestats-1.70.8/treestats/vignettes/Example_data.Rmd |only 60 files changed, 665 insertions(+), 263 deletions(-)
Title: Staggered Difference-in-Differences with Nonlinear Outcomes
Description: Supports staggered difference-in-differences designs with
nonlinear outcomes for both panel and repeated cross-section data.
Implements estimators for staggered treatment adoption with binary,
count, and other nonlinear outcomes, extending Callaway and Sant'Anna
(2021) <doi:10.1016/j.jeconom.2020.12.001> to settings with nonlinear
outcome models such as logit, probit, and Poisson. For panel data,
units are followed over time and 'idname' identifies repeated
observations. For repeated cross-section data, observations are
independent within each time period; 'idname' is optional and may
identify survey records or households, but the estimator does not
require the same units to appear across periods. Repeated cross-section
estimation includes pooled quasi-maximum likelihood approaches motivated
by Wooldridge (2023) <doi:10.1093/ectj/utad016>, with optional weighting
and clustered inference. Methods also draw on Roth and Sant'Anna (2023)
<doi:10.3982/ECTA19402> and Sant'A [...truncated...]
Author: Subir Hait [aut, cre]
Maintainer: Subir Hait <haitsubi@msu.edu>
Diff between NonlinearDiD versions 0.1.0 dated 2026-05-05 and 0.2.0 dated 2026-05-20
NonlinearDiD-0.1.0/NonlinearDiD/build |only NonlinearDiD-0.1.0/NonlinearDiD/inst/doc |only NonlinearDiD-0.1.0/NonlinearDiD/man/att_from_score_cpp.Rd |only NonlinearDiD-0.1.0/NonlinearDiD/man/dr_score_logit_cpp.Rd |only NonlinearDiD-0.1.0/NonlinearDiD/man/multiplier_weights_cpp.Rd |only NonlinearDiD-0.1.0/NonlinearDiD/man/weighted_mean_cpp.Rd |only NonlinearDiD-0.1.0/NonlinearDiD/src |only NonlinearDiD-0.1.0/NonlinearDiD/tests/testthat/test-nonlineardid.R |only NonlinearDiD-0.1.0/NonlinearDiD/vignettes |only NonlinearDiD-0.2.0/NonlinearDiD/DESCRIPTION | 46 NonlinearDiD-0.2.0/NonlinearDiD/MD5 | 70 - NonlinearDiD-0.2.0/NonlinearDiD/NAMESPACE | 3 NonlinearDiD-0.2.0/NonlinearDiD/NEWS.md | 93 - NonlinearDiD-0.2.0/NonlinearDiD/R/NonlinearDiD-package.R | 89 + NonlinearDiD-0.2.0/NonlinearDiD/R/RcppExports.R | 43 NonlinearDiD-0.2.0/NonlinearDiD/R/attgt.R | 660 +++++----- NonlinearDiD-0.2.0/NonlinearDiD/R/bounds.R | 362 ++--- NonlinearDiD-0.2.0/NonlinearDiD/R/estimators.R | 648 ++++----- NonlinearDiD-0.2.0/NonlinearDiD/R/inference.R | 282 +++- NonlinearDiD-0.2.0/NonlinearDiD/R/methods.R | 637 ++++----- NonlinearDiD-0.2.0/NonlinearDiD/R/pretest.R | 434 +++--- NonlinearDiD-0.2.0/NonlinearDiD/R/simulate.R | 238 ++- NonlinearDiD-0.2.0/NonlinearDiD/README.md | 152 +- NonlinearDiD-0.2.0/NonlinearDiD/inst/cleanup_stale_rd.R | 38 NonlinearDiD-0.2.0/NonlinearDiD/man/NonlinearDiD-package.Rd | 87 + NonlinearDiD-0.2.0/NonlinearDiD/man/dot-bootstrap_inference.Rd | 9 NonlinearDiD-0.2.0/NonlinearDiD/man/nonlinear_aggte.Rd | 30 NonlinearDiD-0.2.0/NonlinearDiD/man/nonlinear_attgt.Rd | 151 +- NonlinearDiD-0.2.0/NonlinearDiD/man/nonlinear_bounds.Rd | 22 NonlinearDiD-0.2.0/NonlinearDiD/man/nonlinear_pretest.Rd | 45 NonlinearDiD-0.2.0/NonlinearDiD/man/nonlineardid_methods.Rd | 2 NonlinearDiD-0.2.0/NonlinearDiD/man/plot.nonlinear_aggte.Rd | 2 NonlinearDiD-0.2.0/NonlinearDiD/man/plot.nonlinear_attgt.Rd | 2 NonlinearDiD-0.2.0/NonlinearDiD/man/sim_binary_panel.Rd | 10 NonlinearDiD-0.2.0/NonlinearDiD/man/sim_binary_rcs.Rd |only NonlinearDiD-0.2.0/NonlinearDiD/tests/testthat.R | 11 NonlinearDiD-0.2.0/NonlinearDiD/tests/testthat/helper.R | 14 NonlinearDiD-0.2.0/NonlinearDiD/tests/testthat/test-attgt.R |only 38 files changed, 2325 insertions(+), 1855 deletions(-)
Title: Make 'PICRUSt2' Output Analysis and Visualization Easier
Description: Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
Author: Chen Yang [aut, cre],
Liangliang Zhang [aut]
Maintainer: Chen Yang <cafferychen7850@gmail.com>
Diff between ggpicrust2 versions 2.5.14 dated 2026-04-29 and 2.5.16 dated 2026-05-20
ggpicrust2-2.5.14/ggpicrust2/tests/testthat/Rplots.pdf |only ggpicrust2-2.5.16/ggpicrust2/DESCRIPTION | 6 ggpicrust2-2.5.16/ggpicrust2/MD5 | 50 - ggpicrust2-2.5.16/ggpicrust2/NAMESPACE | 1 ggpicrust2-2.5.16/ggpicrust2/NEWS.md | 21 ggpicrust2-2.5.16/ggpicrust2/R/compare_daa_results.R | 1 ggpicrust2-2.5.16/ggpicrust2/R/data_utils.R | 30 ggpicrust2-2.5.16/ggpicrust2/R/ggpicrust2.R | 8 ggpicrust2-2.5.16/ggpicrust2/R/ko2kegg_abundance.R | 4 ggpicrust2-2.5.16/ggpicrust2/R/pathway_annotation.R | 100 ++ ggpicrust2-2.5.16/ggpicrust2/R/pathway_daa.R | 2 ggpicrust2-2.5.16/ggpicrust2/R/taxa_contribution.R | 341 +++++++--- ggpicrust2-2.5.16/ggpicrust2/README.md | 32 ggpicrust2-2.5.16/ggpicrust2/inst/doc/using_ggpicrust2.R | 16 ggpicrust2-2.5.16/ggpicrust2/inst/doc/using_ggpicrust2.Rmd | 22 ggpicrust2-2.5.16/ggpicrust2/inst/doc/using_ggpicrust2.html | 88 +- ggpicrust2-2.5.16/ggpicrust2/man/aggregate_taxa_contributions.Rd | 8 ggpicrust2-2.5.16/ggpicrust2/man/pathway_annotation.Rd | 10 ggpicrust2-2.5.16/ggpicrust2/man/read_contrib_file.Rd | 30 ggpicrust2-2.5.16/ggpicrust2/man/read_pathway_contrib_file.Rd |only ggpicrust2-2.5.16/ggpicrust2/man/read_strat_file.Rd | 2 ggpicrust2-2.5.16/ggpicrust2/tests/testthat/test-data_utils.R | 39 + ggpicrust2-2.5.16/ggpicrust2/tests/testthat/test-first-principles-fixes.R | 17 ggpicrust2-2.5.16/ggpicrust2/tests/testthat/test-ko2kegg_abundance.R | 18 ggpicrust2-2.5.16/ggpicrust2/tests/testthat/test-pathway_annotation.R | 55 + ggpicrust2-2.5.16/ggpicrust2/tests/testthat/test-taxa_contribution.R | 167 ++++ ggpicrust2-2.5.16/ggpicrust2/vignettes/using_ggpicrust2.Rmd | 22 27 files changed, 895 insertions(+), 195 deletions(-)
Title: A Tool for Processing and Analyzing Dendrometer Data
Description: There are various functions for managing and cleaning data before the application of different approaches. This includes identifying and erasing sudden jumps in dendrometer data not related to environmental change, identifying the time gaps of recordings, and changing the temporal resolution of data to different frequencies. Furthermore, the package calculates daily statistics of dendrometer data, including the daily amplitude of tree growth. Various approaches can be applied to separate radial growth from daily cyclic shrinkage and expansion due to uptake and loss of stem water. In addition, it identifies periods of consecutive days with user-defined climatic conditions in daily meteorological data, then check what trees are doing during that period.
Author: Sugam Aryal [aut, cre, dtc],
Martin Haeusser [aut],
Jussi Griessinger [aut],
Ze-Xin Fan [aut],
Achim Braeuning [aut, dgs]
Maintainer: Sugam Aryal <sugam.aryal@fau.de>
Diff between dendRoAnalyst versions 0.1.5 dated 2024-03-19 and 0.1.6 dated 2026-05-20
dendRoAnalyst-0.1.5/dendRoAnalyst/R/i.jump.locator.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/R/jump_locator.R |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/dm.detrend.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/plot_SC_output.Rd |only dendRoAnalyst-0.1.5/dendRoAnalyst/man/plot_ZG_output.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/DESCRIPTION | 18 dendRoAnalyst-0.1.6/dendRoAnalyst/MD5 | 252 + dendRoAnalyst-0.1.6/dendRoAnalyst/NAMESPACE | 155 dendRoAnalyst-0.1.6/dendRoAnalyst/R/clim.twd.R | 735 +++ dendRoAnalyst-0.1.6/dendRoAnalyst/R/climate_functions.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/daily.data.R | 192 - dendRoAnalyst-0.1.6/dendRoAnalyst/R/dendro.resample.R | 365 + dendRoAnalyst-0.1.6/dendRoAnalyst/R/dendro.truncate.R | 257 + dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.detrend.R | 349 + dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.fit.gompertz.R | 48 dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.growth.evaluate.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.growth.fit.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.growth.fit.double.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm.na.interpolation.R | 1303 ++++++- dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_add_climate.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_join_daily_clim.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_join_phase_clim.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_join_subdaily_clim.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_normalize.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_sea.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_smooth.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_wavelet.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_wavelet_coherence.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/dm_wavelet_reconstruct.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/events_phase_plots.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/jump.locator.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/ktm_clim_hourly.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/mean.detrended.dm.R | 579 ++- dendRoAnalyst-0.1.6/dendRoAnalyst/R/mov.cor.dm.R | 806 +++- dendRoAnalyst-0.1.6/dendRoAnalyst/R/network.interpolation.R | 1848 +++++++++- dendRoAnalyst-0.1.6/dendRoAnalyst/R/phase.sc.R | 135 dendRoAnalyst-0.1.6/dendRoAnalyst/R/phase.zg.R | 558 ++- dendRoAnalyst-0.1.6/dendRoAnalyst/R/plot.daily_output.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/plot.dm_growth_evaluation.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/plot.dm_growth_fit.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/plot_SC_output.R | 1256 ++++++ dendRoAnalyst-0.1.6/dendRoAnalyst/R/plot_ZG_output.R | 1289 ++++++ dendRoAnalyst-0.1.6/dendRoAnalyst/R/plot_climate_phase.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/plot_dm.detrend.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/plot_mov.cor.R | 752 +++- dendRoAnalyst-0.1.6/dendRoAnalyst/R/read.dendrometer.R | 739 +++ dendRoAnalyst-0.1.6/dendRoAnalyst/R/reso_dm.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/stats.clim.twd.R |only dendRoAnalyst-0.1.6/dendRoAnalyst/R/twd.maxima.R | 16 dendRoAnalyst-0.1.6/dendRoAnalyst/R/zzz.R | 2 dendRoAnalyst-0.1.6/dendRoAnalyst/build/partial.rdb |binary dendRoAnalyst-0.1.6/dendRoAnalyst/build/vignette.rds |binary dendRoAnalyst-0.1.6/dendRoAnalyst/data/ktm_clim_hourly.rda |only dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/NEWS.R | 3 dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/NEWS.Rmd | 271 + dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/NEWS.html | 440 ++ dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/dendRoAnalyst_vignettes.R | 637 +++ dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/dendRoAnalyst_vignettes.Rmd | 936 ++++- dendRoAnalyst-0.1.6/dendRoAnalyst/inst/doc/dendRoAnalyst_vignettes.html | 1345 ++++++- dendRoAnalyst-0.1.6/dendRoAnalyst/man/clim.twd.Rd | 149 dendRoAnalyst-0.1.6/dendRoAnalyst/man/clim.twd.stats.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/clim.twd.test.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/daily.data.Rd | 81 dendRoAnalyst-0.1.6/dendRoAnalyst/man/dendro.resample.Rd | 77 dendRoAnalyst-0.1.6/dendRoAnalyst/man/dendro.truncate.Rd | 59 dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm.detrend.fit.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm.fit.gompertz.Rd | 19 dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm.growth.evaluate.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm.growth.fit.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm.growth.fit.double.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm.na.interpolation.Rd | 116 dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_add_climate.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_daily_clim.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_epoch_extract.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_epoch_test.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_event_climate.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_event_climate_summary.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_event_climate_test.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_event_times.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_join_daily_clim.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_join_phase_clim.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_join_subdaily_clim.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_plot_climate.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_plot_climate_compare.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_standardize.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_subdaily_clim.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_wavelet.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_wavelet_coherence.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dm_wavelet_reconstruct.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmea_apply_fun.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmea_extract_from_anchors.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmea_filter_time_table.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmea_parse_time.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmea_prepare_climate.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmea_sample_anchor_one.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmea_stat_fun.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmea_step_seconds.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmea_time_filter_index.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmea_unit_string.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_add_anchor_points.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_build_season_table.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_cummax_na.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_doy_to_date.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_empty_model_params.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_first_non_na.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_fit_model.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_fit_model_gam.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_fit_model_gompertz.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_fit_model_loess.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_fit_model_logistic.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_fit_model_richards.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_fit_model_spline.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_fit_one_curve.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_growth_rate.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_infer_gompertz_starts.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_infer_logistic_starts.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_is_scalar_finite.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_rate_window.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_unique_prediction_curve.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgf_validate_fit_growth_inputs.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_add_anchor_points.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_add_overall_rate_timing.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_add_overall_timing.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_build_season_table.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_cummax_na.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_detect_two_pulse_pattern.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_doy_to_date.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_empty_model_params.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_first_non_na.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_fit_model_double_gompertz.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_fit_model_double_richards.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_fit_model_single_gompertz.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_fit_model_single_richards.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_fit_one_curve.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_fit_single_fallback.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_growth_rate.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_guess_two_pulses.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_infer_double_gompertz_starts.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_infer_double_richards_starts.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_infer_gompertz_starts.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_infer_logistic_starts.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_is_scalar_finite.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_local_maxima.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_pulse_window_from_rate.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgfd_validate_inputs.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgp_prepare_boundary_marks.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgp_prepare_curve_groups.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgp_prepare_timing_plot_data.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgp_resolve_facet_scales.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgp_resolve_timing_facet_scales.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgp_resolve_x_axis.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/dmgp_tidy_fit_data.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/i.jump.locator.Rd | 54 dendRoAnalyst-0.1.6/dendRoAnalyst/man/jump.locator.Rd | 68 dendRoAnalyst-0.1.6/dendRoAnalyst/man/ktm_clim_hourly.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/mean_detrended.dm.Rd | 74 dendRoAnalyst-0.1.6/dendRoAnalyst/man/mov.cor.dm.Rd | 151 dendRoAnalyst-0.1.6/dendRoAnalyst/man/network.interpolation.Rd | 279 + dendRoAnalyst-0.1.6/dendRoAnalyst/man/phase.sc.Rd | 100 dendRoAnalyst-0.1.6/dendRoAnalyst/man/phase.zg.Rd | 150 dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.SC_output.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.SC_output_clim.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.ZG_output.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.ZG_output_clim.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.clim_twd_stats.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.clim_twd_test.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.daily_output.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.daily_output_clim.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_detrended.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_epoch.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_growth_evaluation.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_growth_fit.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_na_interpolation.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_standardized.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_wavelet.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_wavelet_coherence.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.dm_wavelet_reconstruct.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.mean_dm_detrended.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.mov_cor_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.network_interpolation.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot.summary_mov_cor_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_dm_assessment.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_dm_gaps.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_dm_interpolation.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_event_climate_box.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_event_climate_relation.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/plot_mov.cor.Rd | 26 dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.dm_growth_fit.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.mov_cor_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary.clim_twd_stats.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary.clim_twd_test.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary.dm_epoch.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary.dm_growth_fit.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary.dm_wavelet_reconstruct.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/print.summary_mov_cor_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/read.climate.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/read.dendrometer.Rd | 89 dendRoAnalyst-0.1.6/dendRoAnalyst/man/reso_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/smooth_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.clim_twd_stats.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.clim_twd_test.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.dm_epoch.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.dm_growth_fit.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.dm_wavelet.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.dm_wavelet_reconstruct.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/man/summary.mov_cor_dm.Rd |only dendRoAnalyst-0.1.6/dendRoAnalyst/vignettes/NEWS.Rmd | 271 + dendRoAnalyst-0.1.6/dendRoAnalyst/vignettes/dendRoAnalyst_vignettes.Rmd | 936 ++++- 208 files changed, 16203 insertions(+), 1782 deletions(-)
Title: Add Ipea Editorial Standards to 'ggplot2' Graphics
Description: Convenient functions to create 'ggplot2' graphics following the
editorial guidelines of the Institute for Applied Economic
Research (Ipea).
Author: Pedro Ferreira [aut, cre],
Pedro Jorge [aut],
Daniel Lima [aut],
Gustavo Coelho [aut],
Rafael H. M. Pereira [aut],
Lucas Mation [aut],
Fabio Vaz [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Pedro Ferreira <pedro.ferreira2@ipea.gov.br>
Diff between ipeaplot versions 0.5.1 dated 2026-02-06 and 0.5.2 dated 2026-05-20
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 3 +++ inst/doc/cookbook.R | 1 - inst/doc/cookbook.Rmd | 1 - inst/doc/cookbook.html | 5 ++--- inst/doc/intro_ipeaplot.R | 4 ---- inst/doc/intro_ipeaplot.Rmd | 4 ---- inst/doc/intro_ipeaplot.html | 10 +++------- vignettes/cookbook.Rmd | 1 - vignettes/intro_ipeaplot.Rmd | 4 ---- 11 files changed, 21 insertions(+), 38 deletions(-)
Title: Create Maps of Air Pollution Data
Description: Combine the air quality data analysis methods of 'openair'
with the JavaScript 'Leaflet' (<https://leafletjs.com/>) library.
Functionality includes plotting site maps, "directional analysis"
figures such as polar plots, and air mass trajectories.
Author: Jack Davison [cre, aut] ,
David Carslaw [aut]
Maintainer: Jack Davison <jack.davison@wsp.com>
Diff between openairmaps versions 0.10.0 dated 2026-04-04 and 0.10.1 dated 2026-05-20
DESCRIPTION | 17 - MD5 | 58 +-- NEWS.md | 702 ++++++++++++++++++++++----------------------- R/polar_annulusMap.R | 7 R/polar_diffMap.R | 4 R/polar_freqMap.R | 7 R/polar_percentileMap.R | 7 R/polar_polarMap.R | 7 R/polar_pollroseMap.R | 7 R/polar_windroseMap.R | 10 R/traj_trajLevelMap.R | 184 ++++------- R/zDeprecated.R | 490 +------------------------------ man/addPolarMarkers.Rd | 4 man/addTrajPaths.Rd | 14 man/annulusMap.Rd | 54 ++- man/deprecated-traj.Rd | 356 ---------------------- man/diffMap.Rd | 69 +++- man/freqMap.Rd | 70 +++- man/interpolate-map.Rd | 6 man/networkMap.Rd | 4 man/openairmaps-package.Rd | 1 man/percentileMap.Rd | 41 +- man/polarMap.Rd | 63 ++-- man/polar_data.Rd | 2 man/pollroseMap.Rd | 20 - man/searchNetwork.Rd | 4 man/trajLevelMap.Rd | 13 man/trajMap.Rd | 8 man/traj_data.Rd | 2 man/windroseMap.Rd | 42 +- 30 files changed, 799 insertions(+), 1474 deletions(-)
Title: Download Official Spatial Data Sets of Brazil
Description: Easy access to official spatial data sets of Brazil. The package
offers a wide range of spatial data sets available at various
geographic scales and for various years with harmonized attributes,
projection and fixed topology. All functions allow for seamless
integration sf, DuckDB and Arrow.
Author: Rafael H. M. Pereira [aut, cre] ,
Rogerio Jeronimo Barbosa [aut],
Caio Nogueira Goncalves [ctb],
Cecilia do Lago [ctb],
Filipe Cavalcanti [ctb],
Arthur Bazolli [ctb],
Lucas Gelape [ctb],
Rafael Lopes [ctb],
Vinicius Oike [ctb],
Paulo Henrique Fernand [...truncated...]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geobr versions 1.9.1 dated 2024-09-06 and 2.0.0 dated 2026-05-20
geobr-1.9.1/geobr/man/download_gpkg.Rd |only geobr-1.9.1/geobr/man/download_metadata.Rd |only geobr-1.9.1/geobr/man/filter_state.Rd |only geobr-1.9.1/geobr/man/load_gpkg.Rd |only geobr-1.9.1/geobr/man/select_data_type.Rd |only geobr-1.9.1/geobr/tests/testthat/test-read_indigenous_land.R |only geobr-2.0.0/geobr/DESCRIPTION | 61 - geobr-2.0.0/geobr/MD5 | 254 ++-- geobr-2.0.0/geobr/NAMESPACE | 5 geobr-2.0.0/geobr/R/cep_to_state.R | 1 geobr-2.0.0/geobr/R/geobr.R | 15 geobr-2.0.0/geobr/R/list_geobr.R | 239 ++-- geobr-2.0.0/geobr/R/lookup_muni.R | 244 +--- geobr-2.0.0/geobr/R/onLoad.R |only geobr-2.0.0/geobr/R/read_amazon.R | 48 geobr-2.0.0/geobr/R/read_biomes.R | 49 geobr-2.0.0/geobr/R/read_capitals.R | 43 geobr-2.0.0/geobr/R/read_census_tract.R | 132 -- geobr-2.0.0/geobr/R/read_comparable_areas.R | 22 geobr-2.0.0/geobr/R/read_conservation_units.R | 50 geobr-2.0.0/geobr/R/read_country.R | 51 geobr-2.0.0/geobr/R/read_disaster_risk_area.R | 57 geobr-2.0.0/geobr/R/read_favelas.R |only geobr-2.0.0/geobr/R/read_health_facilities.R | 90 - geobr-2.0.0/geobr/R/read_health_region.R | 145 +- geobr-2.0.0/geobr/R/read_immediate_region.R | 75 - geobr-2.0.0/geobr/R/read_indigenous_land.R | 61 - geobr-2.0.0/geobr/R/read_intermediate_region.R | 76 - geobr-2.0.0/geobr/R/read_meso_region.R | 89 - geobr-2.0.0/geobr/R/read_metro_area.R | 65 - geobr-2.0.0/geobr/R/read_micro_region.R | 91 - geobr-2.0.0/geobr/R/read_municipal_seat.R | 59 - geobr-2.0.0/geobr/R/read_municipality.R | 101 - geobr-2.0.0/geobr/R/read_neighborhood.R | 64 - geobr-2.0.0/geobr/R/read_polling_places.R |only geobr-2.0.0/geobr/R/read_pop_arrangements.R | 57 geobr-2.0.0/geobr/R/read_quilombos.R |only geobr-2.0.0/geobr/R/read_region.R | 44 geobr-2.0.0/geobr/R/read_schools.R | 95 + geobr-2.0.0/geobr/R/read_semiarid.R | 54 geobr-2.0.0/geobr/R/read_state.R | 92 - geobr-2.0.0/geobr/R/read_statistical_grid.R | 144 -- geobr-2.0.0/geobr/R/read_urban_area.R | 67 - geobr-2.0.0/geobr/R/read_urban_concentrations.R | 59 - geobr-2.0.0/geobr/R/read_weighting_area.R | 116 -- geobr-2.0.0/geobr/R/remove_islands.R |only geobr-2.0.0/geobr/R/utils.R | 577 +++++----- geobr-2.0.0/geobr/build/partial.rdb |binary geobr-2.0.0/geobr/build/vignette.rds |binary geobr-2.0.0/geobr/inst/doc/intro_to_geobr.R | 280 ++-- geobr-2.0.0/geobr/inst/doc/intro_to_geobr.Rmd | 156 +- geobr-2.0.0/geobr/inst/doc/intro_to_geobr.html | 308 ++--- geobr-2.0.0/geobr/inst/extdata/br_offcoast.parquet |only geobr-2.0.0/geobr/inst/extdata/br_states_lifexpect2017.csv | 56 geobr-2.0.0/geobr/man/cep_to_state.Rd | 3 geobr-2.0.0/geobr/man/check_connection.Rd | 2 geobr-2.0.0/geobr/man/download_metadata2.Rd |only geobr-2.0.0/geobr/man/download_parquet.Rd |only geobr-2.0.0/geobr/man/figures/Thumbs.db |only geobr-2.0.0/geobr/man/filter_arrw.Rd |only geobr-2.0.0/geobr/man/geobr.Rd | 14 geobr-2.0.0/geobr/man/geobr_open_dataset.Rd |only geobr-2.0.0/geobr/man/list_geobr.Rd | 15 geobr-2.0.0/geobr/man/lookup_muni.Rd | 41 geobr-2.0.0/geobr/man/numbers_only.Rd | 36 geobr-2.0.0/geobr/man/read_amazon.Rd | 58 - geobr-2.0.0/geobr/man/read_biomes.Rd | 64 - geobr-2.0.0/geobr/man/read_capitals.Rd | 59 - geobr-2.0.0/geobr/man/read_census_tract.Rd | 53 geobr-2.0.0/geobr/man/read_comparable_areas.Rd | 40 geobr-2.0.0/geobr/man/read_conservation_units.Rd | 35 geobr-2.0.0/geobr/man/read_country.Rd | 62 - geobr-2.0.0/geobr/man/read_disaster_risk_area.Rd | 69 - geobr-2.0.0/geobr/man/read_favela.Rd |only geobr-2.0.0/geobr/man/read_health_facilities.Rd | 101 - geobr-2.0.0/geobr/man/read_health_region.Rd | 98 - geobr-2.0.0/geobr/man/read_immediate_region.Rd | 69 - geobr-2.0.0/geobr/man/read_indigenous_land.Rd | 70 - geobr-2.0.0/geobr/man/read_intermediate_region.Rd | 70 - geobr-2.0.0/geobr/man/read_meso_region.Rd | 63 - geobr-2.0.0/geobr/man/read_metro_area.Rd | 64 - geobr-2.0.0/geobr/man/read_micro_region.Rd | 67 - geobr-2.0.0/geobr/man/read_municipal_seat.Rd | 73 - geobr-2.0.0/geobr/man/read_municipality.Rd | 66 - geobr-2.0.0/geobr/man/read_neighborhood.Rd | 76 - geobr-2.0.0/geobr/man/read_polling_places.Rd |only geobr-2.0.0/geobr/man/read_pop_arrangements.Rd | 69 - geobr-2.0.0/geobr/man/read_quilombola_land.Rd |only geobr-2.0.0/geobr/man/read_region.Rd | 60 - geobr-2.0.0/geobr/man/read_schools.Rd | 100 + geobr-2.0.0/geobr/man/read_semiarid.Rd | 64 - geobr-2.0.0/geobr/man/read_state.Rd | 66 - geobr-2.0.0/geobr/man/read_statistical_grid.Rd | 83 - geobr-2.0.0/geobr/man/read_urban_area.Rd | 74 - geobr-2.0.0/geobr/man/read_urban_concentrations.Rd | 70 - geobr-2.0.0/geobr/man/read_weighting_area.Rd | 88 - geobr-2.0.0/geobr/man/remove_islands.Rd |only geobr-2.0.0/geobr/man/roxygen/templates/code_muni.R |only geobr-2.0.0/geobr/man/roxygen/templates/code_state.R |only geobr-2.0.0/geobr/man/roxygen/templates/date.R |only geobr-2.0.0/geobr/man/roxygen/templates/output.R |only geobr-2.0.0/geobr/man/roxygen/templates/verbose.R |only geobr-2.0.0/geobr/man/roxygen/templates/year.R |only geobr-2.0.0/geobr/man/select_geometry_type.Rd |only geobr-2.0.0/geobr/man/select_metadata.Rd | 7 geobr-2.0.0/geobr/man/select_year_input.Rd | 10 geobr-2.0.0/geobr/tests/tests_rafa/create_br_buffer_to_remove_islands.R |only geobr-2.0.0/geobr/tests/tests_rafa/test_rafa.R | 2 geobr-2.0.0/geobr/tests/testthat.R | 1 geobr-2.0.0/geobr/tests/testthat/test-download_metadata.R | 16 geobr-2.0.0/geobr/tests/testthat/test-list_geobr.R | 10 geobr-2.0.0/geobr/tests/testthat/test-lookup_muni.R | 22 geobr-2.0.0/geobr/tests/testthat/test-read_amazon.R | 4 geobr-2.0.0/geobr/tests/testthat/test-read_biomes.R | 10 geobr-2.0.0/geobr/tests/testthat/test-read_capitals.R | 5 geobr-2.0.0/geobr/tests/testthat/test-read_census_tract.R | 24 geobr-2.0.0/geobr/tests/testthat/test-read_comparable_areas.R | 25 geobr-2.0.0/geobr/tests/testthat/test-read_conservation_units.R | 3 geobr-2.0.0/geobr/tests/testthat/test-read_country.R | 13 geobr-2.0.0/geobr/tests/testthat/test-read_disaster_risk_area.R | 9 geobr-2.0.0/geobr/tests/testthat/test-read_favela.R |only geobr-2.0.0/geobr/tests/testthat/test-read_health_facilities.R | 17 geobr-2.0.0/geobr/tests/testthat/test-read_health_region.R | 22 geobr-2.0.0/geobr/tests/testthat/test-read_immediate_region.R | 12 geobr-2.0.0/geobr/tests/testthat/test-read_indigenous_lands.R |only geobr-2.0.0/geobr/tests/testthat/test-read_intermediate_region.R | 9 geobr-2.0.0/geobr/tests/testthat/test-read_meso_region.R | 10 geobr-2.0.0/geobr/tests/testthat/test-read_metro_area.R | 50 geobr-2.0.0/geobr/tests/testthat/test-read_micro_region.R | 10 geobr-2.0.0/geobr/tests/testthat/test-read_municipal_seat.R | 3 geobr-2.0.0/geobr/tests/testthat/test-read_municipality.R | 29 geobr-2.0.0/geobr/tests/testthat/test-read_neighborhood.R | 3 geobr-2.0.0/geobr/tests/testthat/test-read_polling_places.R |only geobr-2.0.0/geobr/tests/testthat/test-read_pop_arrangements.R | 5 geobr-2.0.0/geobr/tests/testthat/test-read_quilombola_lands.R |only geobr-2.0.0/geobr/tests/testthat/test-read_region.R | 10 geobr-2.0.0/geobr/tests/testthat/test-read_schools.R | 11 geobr-2.0.0/geobr/tests/testthat/test-read_semiarid.R | 20 geobr-2.0.0/geobr/tests/testthat/test-read_state.R | 15 geobr-2.0.0/geobr/tests/testthat/test-read_statistical_grid.R | 30 geobr-2.0.0/geobr/tests/testthat/test-read_urban_area.R | 37 geobr-2.0.0/geobr/tests/testthat/test-read_urban_concentrations.R | 6 geobr-2.0.0/geobr/tests/testthat/test-read_weighting_area.R | 6 geobr-2.0.0/geobr/tests/testthat/test-remove_islands.R |only geobr-2.0.0/geobr/vignettes/intro_to_geobr.Rmd | 156 +- 145 files changed, 3662 insertions(+), 3294 deletions(-)
Title: Set Proxy in R Console
Description: The use of proxies is required in certain network
environments. Despite the power of system level software, it is still
inconvenient to switch proxy networks at random in R's console. This
package is designed to provide one-click switching between proxy and
non-proxy states.
Author: Yonghe Xia [aut, ctb, cre]
Maintainer: Yonghe Xia <xiayh17@gmail.com>
Diff between r.proxy versions 0.1.3 dated 2023-08-15 and 0.1.4 dated 2026-05-20
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- NAMESPACE | 15 +++---- R/check_ip.R | 102 ++++++++++++++++++++++++++++-------------------------- R/proxy.R | 4 +- man/check_ip.Rd | 8 ++-- man/init_proxy.Rd | 38 ++++++++++---------- man/noproxy.Rd | 38 ++++++++++---------- man/proxy.Rd | 38 ++++++++++---------- 9 files changed, 137 insertions(+), 130 deletions(-)
Title: Access the 'PREDICTS' Biodiversity Database
Description: Fetches the 'PREDICTS' database and relevant metadata from the Data
Portal at the Natural History Museum, London <https://data.nhm.ac.uk>. Data
were collated from over 400 existing spatial comparisons of local-scale
biodiversity exposed to different intensities and types of anthropogenic
pressures, from sites around the world. These data are described in Hudson
et al. (2013) <doi:10.1002/ece3.2579>.
Author: Connor Duffin [aut, cre],
The Trustees of The Natural History Museum, London [cph]
Maintainer: Connor Duffin <c.duffin@protonmail.com>
Diff between predictsr versions 0.2.0 dated 2025-11-28 and 0.2.1 dated 2026-05-20
DESCRIPTION | 11 +- MD5 | 26 ++--- NEWS.md | 8 + R/get-extras.R | 15 ++ R/load-predicts-data.R | 156 +++++++++++++++++++++--------- R/utils.R | 32 +++++- README.md | 1 build/partial.rdb |binary build/vignette.rds |binary man/predictsr-package.Rd | 3 tests/testthat/helper.R | 148 +++++++++++++++++++++------- tests/testthat/test-column-descriptions.R | 122 +++++++++++++++++++---- tests/testthat/test-load-predicts.R | 42 +++----- tests/testthat/test-utils.R | 19 +++ 14 files changed, 435 insertions(+), 148 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air pollution
data. Data are typically regular time series and air quality
measurement, meteorological data and dispersion model output can be
analysed. The package is described in Carslaw and Ropkins (2012,
<doi:10.1016/j.envsoft.2011.09.008>) and subsequent papers.
Author: David Carslaw [aut, cre] ,
Jack Davison [aut] ,
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 3.0.0 dated 2026-04-02 and 3.1.0 dated 2026-05-20
DESCRIPTION | 14 LICENSE | 4 MD5 | 338 +- NAMESPACE | 158 - NEWS.md | 134 + R/GaussianSmooth.R | 272 +- R/RColorBrewer.R | 3576 ++++++++++++++---------------- R/RcppExports.R | 132 - R/TaylorDiagram.R | 1338 +++++------ R/TheilSen.R | 1280 +++++----- R/WhittakerSmooth.R | 366 +-- R/aqStats.R | 736 +++--- R/bootMeans.R | 586 ++-- R/breakOpts.R |only R/calcPercentile.R | 262 +- R/calendarPlot.R | 1593 ++++++------- R/checkPrep.R | 332 +- R/colourOpts.R |only R/conditionalEval.R | 917 +++---- R/conditionalQuantile.R | 814 +++--- R/corPlot.R | 1333 +++++------ R/cutData.R | 1951 ++++++++-------- R/datePad.R | 318 +- R/facet_wd.R | 298 +- R/ggplot2-utils.R | 654 ++--- R/importADMS.R | 2464 ++++++++++---------- R/importEurope.R | 438 +-- R/importImperial.R | 880 +++---- R/importMeta.R | 746 +++--- R/importTraj.R | 360 +-- R/importUKAQ-utils.R | 1168 ++++----- R/importUKAQ.R | 1456 ++++++------ R/kzFilter.R |only R/layer_stroked_path.R | 390 +-- R/layer_windflow.R | 288 +- R/modStats.R | 800 +++--- R/mydata.R | 62 R/openColours.R | 1972 +++++++++++----- R/openair-package.R | 198 - R/openair.generics.R | 6 R/percentileRose.R | 1256 +++++----- R/polarAnnulus.R | 1437 ++++++------ R/polarCluster.R | 885 +++---- R/polarDiff.R | 377 +-- R/polarFreq.R | 919 +++---- R/polarPlot.R | 3302 ++++++++++++++------------- R/quickText.R | 490 ++-- R/refOpts.R |only R/rollingMean.R | 300 +- R/rollingQuantile.R | 298 +- R/runRegression.R | 338 +- R/scatterPlot.R | 3187 +++++++++++++------------- R/selectByDate.R | 370 +-- R/selectRunning.R | 320 +- R/senTheil.R | 286 -- R/shared-docs.R | 288 +- R/smoothTrend.R | 1380 ++++++----- R/splitByDate.R | 252 +- R/timeAverage.R | 1196 ++++------ R/timePlot.R | 1566 ++++++------- R/timeProp.R | 615 ++--- R/timeVariation.R | 794 +++--- R/trajCluster.R | 536 ++-- R/trajLevel.R | 2043 +++++++++-------- R/trajPlot.R | 72 R/trendLevel.R | 1244 +++++----- R/utilities.R | 775 ++++-- R/variationPlot.R | 1473 ++++++------ R/windRose.R | 2278 +++++++++---------- R/windflowOpts.R | 375 +-- README.md | 196 - build/partial.rdb |binary inst/CITATION | 42 inst/WORDLIST | 1006 ++++---- man/GaussianSmooth.Rd | 116 man/TaylorDiagram.Rd | 628 ++--- man/TheilSen.Rd | 583 ++-- man/WhittakerSmooth.Rd | 178 - man/aqStats.Rd | 228 - man/bootMeans.Rd | 178 - man/breakOpts.Rd |only man/calcPercentile.Rd | 257 +- man/calc_sqtba_cpp.Rd | 80 man/calendarPlot.Rd | 606 ++--- man/colourOpts.Rd |only man/conditionalEval.Rd | 342 +- man/conditionalQuantile.Rd | 417 +-- man/corPlot.Rd | 440 ++- man/cutData.Rd | 356 +- man/datePad.Rd | 134 - man/distAngle.Rd | 24 man/distEuclid.Rd | 24 man/importADMS.Rd | 363 +-- man/importEurope.Rd | 124 - man/importImperial.Rd | 392 +-- man/importMeta.Rd | 236 - man/importTraj.Rd | 312 +- man/importUKAQ-wrapper.Rd | 506 ++-- man/importUKAQ.Rd | 472 +-- man/kzFilter.Rd |only man/modStats.Rd | 400 +-- man/mydata.Rd | 98 man/openColours.Rd | 317 +- man/openSchemes.Rd |only man/openair-package.Rd | 239 +- man/percentileRose.Rd | 476 ++- man/polarAnnulus.Rd | 628 ++--- man/polarCluster.Rd | 610 +---- man/polarDiff.Rd | 645 ++--- man/polarFreq.Rd | 556 ++-- man/polarPlot.Rd | 995 ++++---- man/pollutionRose.Rd | 357 -- man/quickText.Rd | 112 man/refOpts.Rd |only man/rollingMean.Rd | 140 - man/rollingQuantile.Rd | 128 - man/rolling_gaussian_cpp.Rd | 38 man/runRegression.Rd | 134 - man/scatterPlot.Rd | 743 +++--- man/selectByDate.Rd | 146 - man/selectRunning.Rd | 164 - man/shared_openair_params.Rd | 279 +- man/smoothTrend.Rd | 561 ++-- man/splitByDate.Rd | 142 - man/timeAverage.Rd | 435 +-- man/timePlot.Rd | 729 +++--- man/timeProp.Rd | 389 +-- man/timeVariation.Rd | 642 ++--- man/trajCluster.Rd | 276 +- man/trajLevel.Rd | 698 +++-- man/trajPlot.Rd | 488 ++-- man/trendLevel.Rd | 476 ++- man/variationPlot.Rd | 433 +-- man/windRose.Rd | 603 ++--- man/windflowOpts.Rd | 172 - src/RcppExports.cpp | 31 src/kz_filters.cpp |only tests/testthat.R | 26 tests/testthat/test-GaussianSmooth.R | 326 +- tests/testthat/test-TaylorDiagram.R | 292 +- tests/testthat/test-TheilSen.R | 254 +- tests/testthat/test-WhittakerSmooth.R | 372 +-- tests/testthat/test-aqStats.R | 314 +- tests/testthat/test-bootMeans.R | 242 +- tests/testthat/test-calcPercentile.R | 314 +- tests/testthat/test-calendarPlot.R | 388 +-- tests/testthat/test-conditionalEval.R | 292 +- tests/testthat/test-conditionalQuantile.R | 318 +- tests/testthat/test-corPlot.R | 198 - tests/testthat/test-cutData.R | 382 +-- tests/testthat/test-datePad.R | 304 +- tests/testthat/test-modStats.R | 274 +- tests/testthat/test-openColours.R | 474 ++- tests/testthat/test-percentileRose.R | 224 - tests/testthat/test-polarAnnulus.R | 328 +- tests/testthat/test-polarCluster.R | 178 - tests/testthat/test-polarDiff.R | 116 tests/testthat/test-polarFreq.R | 259 +- tests/testthat/test-polarPlot.R | 348 +- tests/testthat/test-rollingMean.R | 410 +-- tests/testthat/test-rollingQuantile.R | 512 ++-- tests/testthat/test-scatterPlot.R | 310 +- tests/testthat/test-selectByDate.R | 344 +- tests/testthat/test-selectRunning.R | 400 +-- tests/testthat/test-smoothTrend.R | 306 +- tests/testthat/test-splitByDate.R | 234 - tests/testthat/test-timeAverage.R | 471 ++- tests/testthat/test-timePlot.R | 320 +- tests/testthat/test-timeProp.R | 258 +- tests/testthat/test-trajCluster.R | 146 - tests/testthat/test-trajLevel.R | 241 -- tests/testthat/test-trajPlot.R | 186 - tests/testthat/test-trendLevel.R | 307 +- tests/testthat/test-variationPlot.R | 498 ++-- tests/testthat/test-windRose.R | 238 - 175 files changed, 46322 insertions(+), 43888 deletions(-)
Title: 'CRU' 'CL' v. 2.0 Climatology Client
Description: Provides functions that automate downloading and importing
University of East Anglia Climate Research Unit ('CRU') 'CL' v. 2.0
climatology data, facilitates the calculation of minimum temperature
and maximum temperature and formats the data into a data.table object
or a 'terra' 'SpatRaster' object. 'CRU' 'CL' v. 2.0 data are a
gridded climatology of 1961-1990 monthly means released in 2002 and
cover all land areas (excluding Antarctica) at 10 arc minutes
(0.1666667 degree) resolution. For more information see the
description of the data provided by the University of East Anglia
Climate Research Unit,
<https://crudata.uea.ac.uk/cru/data/hrg/tmc/readme.txt>.
Author: Adam H. Sparks [aut, cre]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
This is a re-admission after prior archival of version 1.0.3 dated 2025-02-08
Diff between getCRUCLdata versions 1.0.3 dated 2025-02-08 and 2.0.0 dated 2026-05-20
getCRUCLdata-1.0.3/getCRUCLdata/R/create_CRU_df.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/create_CRU_stack.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/get_CRU.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/get_CRU_df.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/get_CRU_stack.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/internal_functions.R |only getCRUCLdata-1.0.3/getCRUCLdata/R/manage_cached_files.R |only getCRUCLdata-1.0.3/getCRUCLdata/inst/doc/Advanced_use.R |only getCRUCLdata-1.0.3/getCRUCLdata/inst/doc/Advanced_use.Rmd |only getCRUCLdata-1.0.3/getCRUCLdata/inst/doc/Advanced_use.html |only getCRUCLdata-1.0.3/getCRUCLdata/man/create_CRU_df.Rd |only getCRUCLdata-1.0.3/getCRUCLdata/man/create_CRU_stack.Rd |only getCRUCLdata-1.0.3/getCRUCLdata/man/get_CRU_df.Rd |only getCRUCLdata-1.0.3/getCRUCLdata/man/get_CRU_stack.Rd |only getCRUCLdata-1.0.3/getCRUCLdata/man/manage_cache.Rd |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-create_CRU_df.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-create_CRU_stack.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-create_df.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-create_stack.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-get_CRU.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-get_CRU_df.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-get_CRU_stack.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test-validate_dsn.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test_caching.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test_get_local.R |only getCRUCLdata-1.0.3/getCRUCLdata/tests/testthat/test_set_cache.R |only getCRUCLdata-1.0.3/getCRUCLdata/vignettes/Advanced_use.Rmd |only getCRUCLdata-2.0.0/getCRUCLdata/DESCRIPTION | 44 - 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Title: R Interface to Yandex Metrica API
Description: Allows work with 'Management API' for load counters, segments, filters,
user permissions and goals list from Yandex Metrica, 'Reporting API' allows you to get
information about the statistics of site visits and other data without
using the web interface, 'Logs API' allows to receive non-aggregated data and
'Compatible with Google Analytics Core Reporting API v3' allows
receive information about site traffic and other data using field names
from Google Analytics Core API. For more information see official
documents <https://yandex.ru/dev/metrika/doc/api2/concept/about-docpage>.
Author: Alexey Seleznev [aut, cre] ,
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rym versions 1.0.6 dated 2023-03-17 and 1.1.2 dated 2026-05-20
DESCRIPTION | 11 - MD5 | 44 +++--- NAMESPACE | 2 NEWS.md | 13 ++ R/rym_auth.R | 189 ++++++++++++++---------------- README.md | 9 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/intro-to-rym.html | 17 +- inst/doc/rym-calls.R | 30 ++-- inst/doc/rym-calls.html | 31 ++-- inst/doc/rym-ga-api.html | 23 +-- inst/doc/rym-load-expense.R | 74 +++++------ inst/doc/rym-load-expense.html | 79 ++++++------ inst/doc/rym-load-offline-conversion.R | 44 +++--- inst/doc/rym-load-offline-conversion.Rmd | 2 inst/doc/rym-load-offline-conversion.html | 47 +++---- inst/doc/rym-logs-api.html | 23 +-- inst/doc/rym-management-api.R | 82 ++++++------- inst/doc/rym-management-api.html | 87 ++++++------- inst/doc/rym-reporting-api.html | 27 ++-- man/rym-offline-conversion.Rd | 2 vignettes/rym-load-offline-conversion.Rmd | 2 23 files changed, 430 insertions(+), 408 deletions(-)
More information about personnelSelectionUtility at CRAN
Permanent link
Title: Extra Binary Relational and Logical Operators
Description: Speed up common tasks, particularly logical or
relational comparisons and routine follow up tasks such as finding the
indices and subsetting. Inspired by mathematics, where something like:
3 < x < 6 is a standard, elegant and clear way to assert that
x is both greater than 3 and less than 6
(see for example <https://en.wikipedia.org/wiki/Relational_operator>),
a chaining operator is implemented. The chaining operator, %c%,
allows multiple relational operations to be used in quotes on the right
hand side for the same object, on the left hand side.
The %e% operator allows something like set-builder notation
(see for example <https://en.wikipedia.org/wiki/Set-builder_notation>)
to be used on the right hand side.
Operators have built in prefixes defined for all, any, subset, and which
to reduce the amount of code needed for common tasks, such as return those
values that are true.
Author: Joshua F. Wiley [aut, cre]
Maintainer: Joshua F. Wiley <jwiley.psych@gmail.com>
Diff between extraoperators versions 0.3.0 dated 2023-12-13 and 0.4.0 dated 2026-05-20
DESCRIPTION | 15 +- MD5 | 46 ++++---- NAMESPACE | 20 +++ NEWS.md | 12 +- R/identity.R |only R/logical_all.R | 66 +++++------- R/logical_any.R |only R/logicals.R | 175 +++++++++++++++++++++------------ R/subsetting.R | 52 +++------ R/which.R | 54 ++++------ README.md | 70 +++++++------ build/vignette.rds |binary inst/doc/logicals-vignette.R | 61 +++++++++++ inst/doc/logicals-vignette.Rmd | 115 ++++++++++++++++++--- inst/doc/logicals-vignette.html | 211 ++++++++++++++++++++++++++++------------ man/grapes-c-grapes.Rd | 11 +- man/grapes-e-grapes.Rd | 7 - man/identity_operators.Rd |only man/logicalall.Rd | 7 - man/logicalany.Rd |only man/logicals.Rd | 11 +- man/logicalwhich.Rd | 9 - man/subsetting.Rd | 7 - tests/testthat/test-any.R |only tests/testthat/test-identity.R |only tests/testthat/test-logicals.R | 37 ++++--- vignettes/logicals-vignette.Rmd | 115 ++++++++++++++++++--- 27 files changed, 746 insertions(+), 355 deletions(-)
More information about extraoperators at CRAN
Permanent link
Title: Bayesian Analysis of Change Point Problems
Description: Provides an implementation of the product partition model described in Barry and Hartigan (2019) <doi:10.2307/2290726> for the normal errors change point problem using Markov Chain Monte Carlo (MCMC). It also extends the methodology to regression models on a connected graph as reported in Wang and Emerson (2015) <doi:10.48550/arXiv.1509.00817>, allowing estimation of change point models with multivariate responses. Parallel MCMC, previously available in 'bcp' v.3.0.0, is currently not implemented.
Author: Xiaofei Wang [aut],
Chandra Erdman [aut],
John W. Emerson [aut],
Kaiguang Zhao [aut, cre]
Maintainer: Kaiguang Zhao <zhao.1423@osu.edu>
This is a re-admission after prior archival of version 4.0.3 dated 2018-08-13
Diff between bcp versions 4.0.3 dated 2018-08-13 and 4.0.4 dated 2026-05-20
DESCRIPTION | 43 +++++++++++++++++++++++------------ MD5 | 60 ++++++++++++++++++++++++------------------------- R/RcppExports.R | 38 +++++++++++++++---------------- R/bcp-data.R | 8 +++--- R/bcp.R | 10 ++++---- R/output.R | 1 README.md | 2 - demo/NewHaven.R | 41 ++++++++++++++++++--------------- inst/CITATION | 27 +++++++++++++--------- man/NewHavenHousing.Rd | 4 +-- man/RealInt.Rd | 7 ++++- man/bcp.Rd | 20 ++++++++-------- man/coriell.Rd | 4 +-- man/interval.prob.Rd | 2 - man/legacyplot.Rd | 1 man/lombard.Rd | 2 - man/makeAdjGrid.Rd | 19 ++++++++------- man/plot.bcp.Rd | 2 + man/summary.bcp.Rd | 5 ++-- src/Cbcp.cpp | 28 ++++++++++++---------- src/CbcpM.cpp | 6 +++- src/Cbcpgraph.cpp | 18 ++++++++------ src/CbcpgraphR.cpp | 21 +++++++++-------- src/Graph.h | 58 +++++++++++++++++++++++------------------------ src/HelperVariables.h | 10 ++++---- src/MCMC.h | 34 +++++++++++++-------------- src/Makevars | 3 +- src/Makevars.win | 3 +- src/Params.h | 2 - src/RcppExports.cpp | 41 ++++++++++++++++++--------------- src/utils.cpp | 14 +++++------ 31 files changed, 295 insertions(+), 239 deletions(-)
Title: Linear Latent Non-Gaussian Models with Flexible Distributions
Description: Fits and analyzes linear latent non-Gaussian models for
temporal, spatial, and space-time data. The package provides model
components for autoregressive and Ornstein-Uhlenbeck processes, random
walks, Matern fields based on stochastic partial differential equations,
separable and non-separable space-time models, graph-based Matern models,
bivariate type-G fields, and user-defined sparse operators. Latent fields
and observation models can use Gaussian and non-Gaussian noise
distributions, including normal inverse Gaussian, generalized asymmetric
Laplace, and skew-t distributions. Functions are included for simulation,
likelihood-based estimation, prediction, cross-validation, convergence
diagnostics, stochastic gradient optimization, batch-means confidence
intervals, and posterior-like sampling. The modeling framework is described
in Bolin, Jin, Simas and Wallin (2026) "A Unified and Computationally
Efficient Non-Gaussian Statistical Modeling Framework"
<doi:10.48550/arXiv.2602.23987 [...truncated...]
Author: David Bolin [aut, cph],
Xiaotian Jin [aut, cre],
Alexandre Simas [aut],
Jonas Wallin [aut],
Andrea V. Rocha [ctb] ,
Timothy A. Davis [ctb, cph] ,
Patrick R. Amestoy [ctb, cph] ,
Iain S. Duff [ctb, cph] ,
John K. Reid [ctb, cph] ,
Yanqing Chen [ctb, c [...truncated...]
Maintainer: Xiaotian Jin <xiaotian.jin@kaust.edu.sa>
Diff between ngme2 versions 0.9.7 dated 2026-04-28 and 0.9.8 dated 2026-05-20
DESCRIPTION | 6 - MD5 | 21 ++-- NAMESPACE | 4 NEWS.md | 36 ++++++- R/info_datasets.R | 30 +++++ R/models.R | 52 ++-------- R/noise.R | 152 ++++++++++++++++++++++++++++++ R/predict.R | 39 +++++++ data/pm25_quarterly_2022.rda |only man/noise_moments.Rd |only man/pm25_quarterly_2022.Rd |only man/precision_matrix_multivariate_spde.Rd | 52 ++-------- tests/testthat/test-core-noise-moments.R |only tests/testthat/test-predict-normal-nig.R |only 14 files changed, 298 insertions(+), 94 deletions(-)
Title: Lasso Penalized Precision Matrix Estimation
Description: Estimates a lasso penalized precision matrix via blockwise coordinate descent (BCD). This package is a simple wrapper around the popular 'glasso' package and extends and enhances its capabilities. These enhancements include built-in cross validation and visualizations.
See Friedman et al. (2008) <doi:10.1093/biostatistics/kxm045> for details regarding the estimation method.
Author: Matt Galloway [aut],
James Curran [aut, cre]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between CVglasso versions 1.0 dated 2018-06-04 and 1.0.1 dated 2026-05-20
DESCRIPTION | 43 +- MD5 | 29 - NEWS.md |only R/CV.R | 34 - R/CVP.R | 31 - R/glasso.R | 871 +++++++++++++++++++++--------------------- build |only inst |only man/CV.Rd | 20 man/CVP.Rd | 18 man/CVglasso.Rd | 34 + man/plot.CVglasso.Rd | 8 tests/testthat/testCVglasso.R | 77 +-- vignettes |only 14 files changed, 613 insertions(+), 552 deletions(-)
Title: Climate Tools (Series Homogenization and Derived Products)
Description: Functions for the quality control, homogenization and missing data filling of climatological series and to obtain climatological summaries and grids from the results. Also functions to display wind-roses, meteograms, Walter&Lieth diagrams, and more.
Author: Jose A. Guijarro [aut, cre]
Maintainer: Jose A. Guijarro <jaguijarro21@gmail.com>
Diff between climatol versions 4.4-0 dated 2025-12-17 and 4.5-0 dated 2026-05-20
DESCRIPTION | 8 - MD5 | 18 +- NAMESPACE | 2 NEWS | 22 +++ R/clihomog.R | 337 +++++++++++++++++++++++++---------------------- R/clitools.R | 13 - man/climatol2rclimdex.Rd | 4 man/homogen.Rd | 51 +++---- man/meteogram.Rd | 2 man/outrename.Rd | 7 10 files changed, 254 insertions(+), 210 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-13 0.0.6
2025-11-02 0.0.5
2025-09-30 0.0.4
2025-01-13 0.0.3
2024-12-07 0.0.2
2024-12-05 0.0.1
Title: Spatial Analysis and Modelling Utilities
Description: Utilities to support spatial data manipulation, query, sampling
and modelling in ecological applications. Functions include models for species
population density, spatial smoothing, multivariate separability, point process
model for creating pseudo- absences and sub-sampling, Quadrant-based sampling and
analysis, auto-logistic modeling, sampling models, cluster optimization, statistical
exploratory tools and raster-based metrics.
Author: Jeffrey S. Evans [aut, cre] ,
Melanie A. Murphy [ctb],
Karthik Ram [ctb]
Maintainer: Jeffrey S. Evans <sage_insights@outlook.com>
Diff between spatialEco versions 2.0-4 dated 2026-04-04 and 2.0-5 dated 2026-05-20
DESCRIPTION | 10 MD5 | 456 +++++++++++++++++++-------------------- R/annulus.matrix.R | 2 R/aspline.downscale.R | 4 R/background.R | 2 R/bbox_poly.R | 2 R/bearing.distance.R | 2 R/breeding.density.R | 2 R/built.index.R | 2 R/chae.R | 2 R/classBreaks.R | 2 R/collinear.R | 2 R/combine.R | 2 R/concordance.R | 2 R/conf.interval.R | 2 R/correlogram.R | 2 R/cross.tab.R | 2 R/csi.R | 33 ++ R/curvature.R | 2 R/dahi.R | 2 R/date_seq.R | 2 R/daymet.point.R | 2 R/daymet.tiles.R | 2 R/dispersion.R | 2 R/dissection.R | 2 R/divergence.R | 2 R/effect.size.R | 2 R/extract_vertices.R | 2 R/fuzzySum.R | 2 R/gaussian.kernel.R | 2 R/geo.buffer.R | 2 R/hli.R | 2 R/hli.pt.R | 2 R/hsp.R | 2 R/hybrid.kmeans.R | 2 R/insert.R | 2 R/insert.values.R | 2 R/is.empty.R | 2 R/kendall.R | 2 R/kl.divergence.R | 2 R/knn.R | 2 R/lai.R | 2 R/local.min.max.R | 2 R/loess.boot.R | 2 R/loess.ci.R | 2 R/logistic.regression.R | 2 R/max_extent.R | 2 R/mean_angle.R | 2 R/moments.R | 2 R/morans.plot.R | 2 R/nni.R | 2 R/nth.values.R | 2 R/o.ring.R | 2 R/optimized.sample.variance.R | 2 R/outliers.R | 2 R/overlap.R | 2 R/parea.sample.R | 2 R/parse.bits.R | 2 R/partial.cor.R | 2 R/plot.effect.size.R | 2 R/plot.loess.boot.R | 2 R/poly.regression.R | 2 R/polyPerimeter.R | 2 R/poly_trend.R | 2 R/pp.subsample.R | 2 R/proximity.index.R | 2 R/pseudo.absence.R | 2 R/quadrats.R | 2 R/random.raster.R | 2 R/raster.Zscore.R | 2 R/raster.change.R | 2 R/raster.deviation.R | 2 R/raster.downscale.R | 4 R/raster.entropy.R | 2 R/raster.gaussian.smooth.R | 2 R/raster.invert.R | 2 R/raster.kendall.R | 2 R/raster.mds.R | 2 R/raster.modified.ttest.R | 2 R/raster.moments.R | 2 R/raster.transformations.R | 2 R/raster.vol.R | 2 R/rasterCorrelation.R | 2 R/rasterDistance.R | 2 R/remove.holes.R | 2 R/remove_duplicates.R | 2 R/sa.trans.R | 12 - R/sample.annulus.R | 2 R/sampleTransect.R | 2 R/sar.R | 2 R/separability.R | 2 R/sf.kde.R | 14 - R/sf_dissolve.R | 2 R/shannons.R | 2 R/shift.R | 2 R/sieve.R | 2 R/similarity.R | 2 R/smooth.time.series.R | 2 R/sobel.R | 2 R/spatial.select.R | 2 R/spectral.separability.R | 2 R/squareBuffer.R | 2 R/srr.R | 2 R/stratified.random.R | 2 R/subsample.distance.R | 2 R/swvi.R | 2 R/time_to_event.R | 2 R/topo.distance.R | 2 R/tpi.R | 2 R/trasp.R | 2 R/trend.line.R | 2 R/tri.R | 2 R/vrm.R | 2 R/winsorize.R | 2 R/wt.centroids.R | 2 R/z_normalization.R | 2 inst/NEWS | 14 + man/annulus.matrix.Rd | 2 man/aspline.downscale.Rd | 4 man/background.Rd | 2 man/bbox_poly.Rd | 2 man/bearing.distance.Rd | 2 man/breeding.density.Rd | 2 man/built.index.Rd | 2 man/chae.Rd | 2 man/classBreaks.Rd | 2 man/collinear.Rd | 2 man/combine.Rd | 2 man/concordance.Rd | 2 man/conf.interval.Rd | 2 man/correlogram.Rd | 2 man/cross.tab.Rd | 2 man/csi.Rd | 4 man/curvature.Rd | 2 man/dahi.Rd | 2 man/date_seq.Rd | 2 man/daymet.point.Rd | 2 man/daymet.tiles.Rd | 2 man/dispersion.Rd | 2 man/dissection.Rd | 2 man/divergence.Rd | 2 man/effect.size.Rd | 2 man/extract.vertices.Rd | 2 man/fuzzySum.Rd | 2 man/gaussian.kernel.Rd | 2 man/geo.buffer.Rd | 2 man/hli.Rd | 2 man/hli.pt.Rd | 2 man/hsp.Rd | 2 man/hybrid.kmeans.Rd | 2 man/insert.Rd | 2 man/insert.values.Rd | 2 man/is.empty.Rd | 2 man/kendall.Rd | 2 man/kl.divergence.Rd | 2 man/knn.Rd | 2 man/lai.Rd | 2 man/local.min.max.Rd | 2 man/loess.boot.Rd | 2 man/loess.ci.Rd | 2 man/logistic.regression.Rd | 2 man/max_extent.Rd | 2 man/mean_angle.Rd | 2 man/moments.Rd | 2 man/morans.plot.Rd | 2 man/nni.Rd | 2 man/nth.values.Rd | 2 man/o.ring.Rd | 2 man/optimized.sample.variance.Rd | 2 man/outliers.Rd | 2 man/overlap.Rd | 2 man/parea.sample.Rd | 2 man/parse.bits.Rd | 2 man/partial.cor.Rd | 2 man/plot.effect.size.Rd | 2 man/plot.loess.boot.Rd | 2 man/poly.regression.Rd | 2 man/polyPerimeter.Rd | 2 man/poly_trend.Rd | 2 man/pp.subsample.Rd | 2 man/proximity.index.Rd | 2 man/pseudo.absence.Rd | 2 man/quadrats.Rd | 2 man/random.raster.Rd | 2 man/raster.Zscore.Rd | 2 man/raster.change.Rd | 2 man/raster.deviation.Rd | 2 man/raster.downscale.Rd | 4 man/raster.entropy.Rd | 2 man/raster.gaussian.smooth.Rd | 2 man/raster.invert.Rd | 2 man/raster.kendall.Rd | 2 man/raster.mds.Rd | 2 man/raster.modified.ttest.Rd | 2 man/raster.moments.Rd | 2 man/raster.transformation.Rd | 2 man/raster.vol.Rd | 2 man/rasterCorrelation.Rd | 2 man/rasterDistance.Rd | 2 man/remove.holes.Rd | 2 man/remove_duplicates.Rd | 2 man/sample.annulus.Rd | 2 man/sampleTransect.Rd | 2 man/sar.Rd | 2 man/separability.Rd | 2 man/sf_dissolve.Rd | 2 man/shannons.Rd | 2 man/shift.Rd | 2 man/sieve.Rd | 2 man/similarity.Rd | 2 man/smooth.time.series.Rd | 2 man/sobal.Rd | 2 man/spatial.select.Rd | 2 man/spectral.separability.Rd | 2 man/squareBuffer.Rd | 2 man/srr.Rd | 2 man/stratified.random.Rd | 2 man/subsample.distance.Rd | 2 man/swvi.Rd | 2 man/time_to_event.Rd | 2 man/topo.distance.Rd | 2 man/tpi.Rd | 2 man/trasp.Rd | 2 man/trend.line.Rd | 2 man/tri.Rd | 2 man/vrm.Rd | 2 man/winsorize.Rd | 2 man/wt.centroid.Rd | 2 man/z_normalization.Rd | 2 229 files changed, 511 insertions(+), 484 deletions(-)
Title: Load Data From 'Yandex Direct'
Description: Load data from 'Yandex Direct' API V5
<https://yandex.ru/dev/direct/doc/dg/concepts/about-docpage> into R.
Provide function for load lists of campaings, ads, keywords and other
objects from 'Yandex Direct' account. Also you can load statistic from
API 'Reports Service' <https://yandex.ru/dev/direct/doc/reports/reports-docpage>.
And allows keyword bids management.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between ryandexdirect versions 3.6.2 dated 2023-03-17 and 3.6.6 dated 2026-05-20
DESCRIPTION | 14 - MD5 | 43 +-- NAMESPACE | 4 NEWS.md | 12 R/methods.R | 5 R/yadirAuth.R | 157 +++++++----- R/yadirGetCampaign.R | 280 ++++++++-------------- R/zzz.R | 4 README.md | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/yandex-direct-auth.R | 12 inst/doc/yandex-direct-auth.html | 17 - inst/doc/yandex-direct-cost-data.R | 46 +-- inst/doc/yandex-direct-cost-data.html | 101 ++++--- inst/doc/yandex-direct-get-statistic.R | 138 +++++----- inst/doc/yandex-direct-get-statistic.html | 143 +++++------ inst/doc/yandex-direct-get-wordstat-forecast.R | 112 ++++---- inst/doc/yandex-direct-get-wordstat-forecast.html | 123 ++++----- inst/doc/yandex-direct-keyword-bids.R | 248 +++++++++---------- inst/doc/yandex-direct-keyword-bids.html | 227 ++++++++--------- man/print.yadir_token.Rd |only man/yadirGetCampaign.Rd | 2 23 files changed, 845 insertions(+), 846 deletions(-)
Title: Rapid Realistic Routing with 'R5'
Description: Rapid realistic routing on multimodal transport networks
(walk, bike, public transport and car) using 'R5', the Rapid Realistic
Routing on Real-world and Reimagined networks engine
<https://github.com/conveyal/r5>. The package allows users to generate
detailed routing analysis or calculate travel time and monetary cost matrices
using seamless parallel computing on top of the R5 Java machine. While R5
is developed by Conveyal, the package r5r is independently developed
by a team at the Institute for Applied Economic Research (Ipea) with
contributions from collaborators. Apart from the documentation in this
package, users will find additional information on R5 documentation at
<https://docs.conveyal.com/>. Although we try to keep new releases of
r5r in synchrony with R5, the development of R5 follows Conveyal's
independent update process. Hence, users should confirm the R5 version
implied by the Conveyal user manual (see
<https://docs.conveyal.com/changelog>) correspon [...truncated...]
Author: Marcus Saraiva [aut] ,
Rafael H. M. Pereira [aut, cre] ,
Daniel Herszenhut [aut] ,
Alex Magnus [aut],
Matthew Wigginton Bhagat-Conway [aut] ,
Carlos Kaue Vieira Braga [ctb] ,
Luyu Liu [ctb] ,
Egor Kotov [ctb] ,
Daniel Snow [ctb],
Ipea - Institute for [...truncated...]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between r5r versions 2.3.0 dated 2025-08-21 and 2.4.0 dated 2026-05-20
DESCRIPTION | 18 MD5 | 241 - NAMESPACE | 3 NEWS.md | 53 R/accessibility.R | 605 +-- R/arrival_travel_time_matrix.R | 15 R/build_network.R | 333 - R/check_transit_availability.R |only R/detailed_itineraries.R | 33 R/download_r5.R | 206 - R/expanded_travel_time_matrix.R | 19 R/get_gtfs_errors.R |only R/isochrone.R | 701 +-- R/onLoad.R | 70 R/pareto_frontier.R | 5 R/set.R | 56 R/setup_r5.R | 138 R/street_network_bbox.R |only R/surface_isochrone.R |only R/travel_time_matrix.R | 19 R/travel_time_surface.R |only R/utils.R | 8 R/webmercator.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/accessibility.R | 268 - inst/doc/accessibility.Rmd | 72 inst/doc/accessibility.html | 138 inst/doc/detailed_itineraries.R | 120 inst/doc/detailed_itineraries.Rmd | 22 inst/doc/detailed_itineraries.html | 55 inst/doc/faq.Rmd | 208 - inst/doc/faq.html | 4 inst/doc/fare_structure.R | 405 +- inst/doc/fare_structure.Rmd | 989 ++--- inst/doc/fare_structure.html | 233 - inst/doc/isochrones.R | 213 - inst/doc/isochrones.Rmd | 131 inst/doc/isochrones.html | 210 - inst/doc/pareto_frontier.R | 211 - inst/doc/pareto_frontier.Rmd | 493 +- inst/doc/pareto_frontier.html | 72 inst/doc/r5r.R | 220 - inst/doc/r5r.Rmd | 2 inst/doc/r5r.html | 103 inst/doc/scenarios.R | 330 - inst/doc/scenarios.html | 5489 ----------------------------- inst/doc/time_window.R | 178 inst/doc/time_window.Rmd | 418 +- inst/doc/time_window.html | 147 inst/doc/travel_time_matrix.R | 184 inst/doc/travel_time_matrix.Rmd | 422 +- inst/doc/travel_time_matrix.html | 182 inst/extdata/metadata_r5r.csv | 1 inst/extdata/poa/network_settings.json |only inst/extdata/poa/poa_osm.pbf.mapdb |only inst/jar/r5r.jar |binary man/accessibility.Rd | 7 man/arrival_travel_time_matrix.Rd | 2 man/build_network.Rd | 7 man/check_transit_availability.Rd |only man/congestion_poly2geojson.Rd | 2 man/detailed_itineraries.Rd | 19 man/download_r5.Rd | 2 man/exists_tiff.Rd | 2 man/expanded_travel_time_matrix.Rd | 2 man/fileurl_from_metadata.Rd | 2 man/find_snap.Rd | 3 man/get_gtfs_errors.Rd |only man/isochrone.Rd | 37 man/lts_lines2shp.Rd | 2 man/pareto_frontier.Rd | 2 man/r5r.Rd | 1 man/r5r_cache.Rd | 2 man/r5r_sitrep.Rd | 2 man/read_fare_structure.Rd | 2 man/reverse_back_if_direct_mode.Rd |only man/reverse_if_direct_mode.Rd | 7 man/roxygen/templates/elevation.R | 5 man/roxygen/templates/elevation_section.R | 28 man/roxygen/templates/percentiles.R |only man/set_breakdown.Rd | 1 man/set_cutoffs.Rd | 1 man/set_elevation.Rd | 1 man/set_expanded_travel_times.Rd | 1 man/set_fare_cutoffs.Rd | 1 man/set_fare_structure.Rd | 1 man/set_max_fare.Rd | 1 man/set_max_lts.Rd | 1 man/set_max_rides.Rd | 1 man/set_monte_carlo_draws.Rd | 1 man/set_n_threads.Rd | 1 man/set_new_congestion.Rd | 1 man/set_new_lts.Rd | 1 man/set_output_dir.Rd | 1 man/set_percentiles.Rd | 1 man/set_progress.Rd | 1 man/set_speed.Rd | 1 man/set_suboptimal_minutes.Rd | 1 man/set_time_window.Rd | 1 man/set_verbose.Rd | 1 man/setup_fare_structure.Rd | 2 man/setup_r5.Rd | 7 man/start_r5r_java.Rd | 2 man/stop_r5.Rd | 4 man/street_network_bbox.Rd |only man/street_network_to_sf.Rd | 3 man/tempdir_unique.Rd | 2 man/transit_network_to_sf.Rd | 3 man/travel_time_matrix.Rd | 2 man/travel_time_surface.Rd |only man/validate_bad_osm_ids.Rd | 64 man/write_fare_structure.Rd | 2 tests/tests_rafa/issue_534.R |only tests/tests_rafa/osm_ids.R | 244 - tests/tests_rafa/r5r_arrow.R | 145 tests/tests_rafa/test_rafa.R | 1936 +++++----- tests/testthat/test-build_network.R | 327 + tests/testthat/test-isochrone.R | 14 tests/testthat/test-street_network_bbox.R |only tests/testthat/test-transit_availability.R |only vignettes/accessibility.Rmd | 72 vignettes/detailed_itineraries.Rmd | 22 vignettes/faq.Rmd | 208 - vignettes/fare_structure.Rmd | 989 ++--- vignettes/isochrones.Rmd | 131 vignettes/pareto_frontier.Rmd | 493 +- vignettes/r5r.Rmd | 2 vignettes/time_window.Rmd | 418 +- vignettes/travel_time_matrix.Rmd | 422 +- 130 files changed, 7057 insertions(+), 12656 deletions(-)
Title: Simulate from ODE-Based Models
Description: Fast simulation from ordinary differential equation
(ODE) based models typically employed in quantitative pharmacology and
systems biology.
Author: Kyle T Baron [aut, cre] ,
Bill Gillespie [ctb],
Charles Margossian [ctb],
Devin Pastoor [ctb],
Bill Denney [ctb] ,
Dilawar Singh [ctb],
Felicien Le Louedec [ctb] ,
Timothy Waterhouse [ctb] ,
Kyle Meyer [ctb],
Metrum Research Group [cph]
Maintainer: Kyle T Baron <kyleb@metrumrg.com>
Diff between mrgsolve versions 1.7.2 dated 2026-01-22 and 2.0.1 dated 2026-05-20
mrgsolve-1.7.2/mrgsolve/R/r_to_cpp.R |only mrgsolve-1.7.2/mrgsolve/R/render.R |only mrgsolve-1.7.2/mrgsolve/man/cama.Rd |only mrgsolve-1.7.2/mrgsolve/man/plot_batch_mrgsims.Rd |only mrgsolve-1.7.2/mrgsolve/man/render.Rd |only mrgsolve-1.7.2/mrgsolve/src/housemodel-mread-header.h |only mrgsolve-1.7.2/mrgsolve/tests/testthat/test-knobs.R |only mrgsolve-1.7.2/mrgsolve/tests/testthat/test-workflow.R |only mrgsolve-2.0.1/mrgsolve/DESCRIPTION | 19 mrgsolve-2.0.1/mrgsolve/MD5 | 217 +- mrgsolve-2.0.1/mrgsolve/NAMESPACE | 18 mrgsolve-2.0.1/mrgsolve/NEWS.md | 149 + mrgsolve-2.0.1/mrgsolve/R/Aaaa.R | 20 mrgsolve-2.0.1/mrgsolve/R/RcppExports.R | 66 mrgsolve-2.0.1/mrgsolve/R/class_build.R | 11 mrgsolve-2.0.1/mrgsolve/R/class_mrgmod.R | 51 mrgsolve-2.0.1/mrgsolve/R/class_mrgsims.R | 10 mrgsolve-2.0.1/mrgsolve/R/compile.R | 276 +-- mrgsolve-2.0.1/mrgsolve/R/custom-tol.R | 27 mrgsolve-2.0.1/mrgsolve/R/data_set.R | 78 mrgsolve-2.0.1/mrgsolve/R/dsl-preprocess-addin.R |only mrgsolve-2.0.1/mrgsolve/R/env.R | 106 - mrgsolve-2.0.1/mrgsolve/R/events.R | 19 mrgsolve-2.0.1/mrgsolve/R/generics.R | 2 mrgsolve-2.0.1/mrgsolve/R/handle_spec_block.R | 224 +- mrgsolve-2.0.1/mrgsolve/R/idata_set.R | 66 mrgsolve-2.0.1/mrgsolve/R/init.R | 6 mrgsolve-2.0.1/mrgsolve/R/knobs.R | 293 --- mrgsolve-2.0.1/mrgsolve/R/matrix.R | 1 mrgsolve-2.0.1/mrgsolve/R/model_include.R | 50 mrgsolve-2.0.1/mrgsolve/R/modlib.R | 359 +--- mrgsolve-2.0.1/mrgsolve/R/modspec.R | 353 +++ mrgsolve-2.0.1/mrgsolve/R/mread.R | 175 - mrgsolve-2.0.1/mrgsolve/R/mrgsim_q.R | 2 mrgsolve-2.0.1/mrgsolve/R/mrgsims.R | 177 + mrgsolve-2.0.1/mrgsolve/R/mrgsolve.R | 19 mrgsolve-2.0.1/mrgsolve/R/nm-mode.R | 35 mrgsolve-2.0.1/mrgsolve/R/nmxml.R | 6 mrgsolve-2.0.1/mrgsolve/R/package.R | 1 mrgsolve-2.0.1/mrgsolve/R/print.R | 1 mrgsolve-2.0.1/mrgsolve/R/utils.R | 27 mrgsolve-2.0.1/mrgsolve/R/workflows.R | 75 mrgsolve-2.0.1/mrgsolve/inst/WORDLIST | 9 mrgsolve-2.0.1/mrgsolve/inst/base/modelheader.h | 75 mrgsolve-2.0.1/mrgsolve/inst/base/mrgsolv.h | 47 mrgsolve-2.0.1/mrgsolve/inst/base/mrgsolve-evtools-regimen.h | 2 mrgsolve-2.0.1/mrgsolve/inst/include/dataobject.h | 1 mrgsolve-2.0.1/mrgsolve/inst/include/odeproblem.h | 5 mrgsolve-2.0.1/mrgsolve/inst/models/1005.cpp | 30 mrgsolve-2.0.1/mrgsolve/inst/models/MODLIST | 2 mrgsolve-2.0.1/mrgsolve/inst/models/emax.cpp | 14 mrgsolve-2.0.1/mrgsolve/inst/models/irm1.cpp | 6 mrgsolve-2.0.1/mrgsolve/inst/models/irm2.cpp | 16 mrgsolve-2.0.1/mrgsolve/inst/models/irm3.cpp | 16 mrgsolve-2.0.1/mrgsolve/inst/models/irm4.cpp | 22 mrgsolve-2.0.1/mrgsolve/inst/models/nm-like.cpp | 33 mrgsolve-2.0.1/mrgsolve/inst/models/pk1.cpp | 4 mrgsolve-2.0.1/mrgsolve/inst/models/pk1cmt.cpp | 34 mrgsolve-2.0.1/mrgsolve/inst/models/pk2.cpp | 4 mrgsolve-2.0.1/mrgsolve/inst/models/pk2cmt.cpp | 24 mrgsolve-2.0.1/mrgsolve/inst/models/pk2iv.cpp | 2 mrgsolve-2.0.1/mrgsolve/inst/models/pk3.cpp |only mrgsolve-2.0.1/mrgsolve/inst/models/pk3cmt.cpp | 34 mrgsolve-2.0.1/mrgsolve/inst/models/pk3iv.cpp |only mrgsolve-2.0.1/mrgsolve/inst/models/tmdd.cpp | 14 mrgsolve-2.0.1/mrgsolve/inst/mrgx/mrgx.h | 123 + mrgsolve-2.0.1/mrgsolve/inst/rstudio |only mrgsolve-2.0.1/mrgsolve/man/PKMODEL.Rd | 89 mrgsolve-2.0.1/mrgsolve/man/convert_fort_if_impl.Rd |only mrgsolve-2.0.1/mrgsolve/man/convert_pow_impl.Rd |only mrgsolve-2.0.1/mrgsolve/man/convert_semicolons_impl.Rd |only mrgsolve-2.0.1/mrgsolve/man/data_set.Rd | 37 mrgsolve-2.0.1/mrgsolve/man/dsl_preprocess.Rd |only mrgsolve-2.0.1/mrgsolve/man/env_eval.Rd | 6 mrgsolve-2.0.1/mrgsolve/man/env_get.Rd | 54 mrgsolve-2.0.1/mrgsolve/man/ev_ops.Rd | 3 mrgsolve-2.0.1/mrgsolve/man/idata_set.Rd | 38 mrgsolve-2.0.1/mrgsolve/man/knobs.Rd | 77 mrgsolve-2.0.1/mrgsolve/man/modelparse.Rd | 28 mrgsolve-2.0.1/mrgsolve/man/modelsplit.Rd |only mrgsolve-2.0.1/mrgsolve/man/modlib.Rd | 1 mrgsolve-2.0.1/mrgsolve/man/modlib_details.Rd | 67 mrgsolve-2.0.1/mrgsolve/man/modlib_pk.Rd | 41 mrgsolve-2.0.1/mrgsolve/man/modlib_pkpd.Rd | 32 mrgsolve-2.0.1/mrgsolve/man/modlib_tmdd.Rd | 36 mrgsolve-2.0.1/mrgsolve/man/modlib_viral.Rd | 39 mrgsolve-2.0.1/mrgsolve/man/mrgsims_dplyr.Rd | 18 mrgsolve-2.0.1/mrgsolve/man/nmext.Rd | 2 mrgsolve-2.0.1/mrgsolve/man/nmxml.Rd | 2 mrgsolve-2.0.1/mrgsolve/man/plot_mrgsims.Rd | 46 mrgsolve-2.0.1/mrgsolve/man/warn_int_div_impl.Rd |only mrgsolve-2.0.1/mrgsolve/man/wf_sweep.Rd | 32 mrgsolve-2.0.1/mrgsolve/src/RcppExports.cpp | 58 mrgsolve-2.0.1/mrgsolve/src/dataobject.cpp | 6 mrgsolve-2.0.1/mrgsolve/src/datarecord.cpp | 41 mrgsolve-2.0.1/mrgsolve/src/devtran.cpp | 104 - mrgsolve-2.0.1/mrgsolve/src/dsl-preprocess.cpp |only mrgsolve-2.0.1/mrgsolve/src/housemodel-mread-source.cpp | 159 + mrgsolve-2.0.1/mrgsolve/src/lsoda_functions.h | 10 mrgsolve-2.0.1/mrgsolve/src/mrgsolve.cpp | 46 mrgsolve-2.0.1/mrgsolve/src/mrgsolve_init.cpp | 12 mrgsolve-2.0.1/mrgsolve/src/odeproblem.cpp | 275 ++- mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-both.cpp | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-ext.cpp | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-omega-skip.mod | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-path-ext.mod | 2 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-path-xml.mod | 2 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/1005-xml.cpp | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/cppstem-nmext/1005.cpp | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/nm/cppstem-nmxml/1005.cpp | 1 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-carry_out.R | 4 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-data_set.R | 40 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-dplyr-generics.R | 8 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-env.R | 79 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-idata_set.R | 23 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-inventory-too.R | 9 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-modspec.R | 892 ++++++++-- mrgsolve-2.0.1/mrgsolve/tests/testthat/test-mrgsims.R | 71 mrgsolve-2.0.1/mrgsolve/tests/testthat/test-tolerances.R | 23 119 files changed, 3726 insertions(+), 2248 deletions(-)
Title: Read and Write General Transit Feed Specification (GTFS) Files
Description: Tools for the development of packages related to General
Transit Feed Specification (GTFS) files. Establishes a standard for
representing GTFS feeds using R data types. Provides fast and flexible
functions to read and write GTFS feeds while sticking to this
standard. Defines a basic 'gtfs' class which is meant to be extended
by packages that depend on it. And offers utility functions that
support checking the structure of GTFS objects.
Author: Daniel Herszenhut [aut] ,
Flavio Poletti [aut, cre],
Mark Padgham [aut],
Rafael H. M. Pereira [rev] ,
Tom Buckley [rev],
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Flavio Poletti <flavio.poletti@hotmail.ch>
Diff between gtfsio versions 1.2.0 dated 2024-10-11 and 1.2.1 dated 2026-05-20
DESCRIPTION | 24 LICENSE | 4 MD5 | 115 +- NAMESPACE | 38 NEWS.md | 166 +-- R/assert_gtfs.R | 232 ++-- R/assert_inputs.R | 560 +++++------ R/checks.R | 517 +++++------ R/data.R | 104 +- R/export_gtfs.R | 486 +++++----- R/get_gtfs_standards.R | 793 ++++++++-------- R/gtfs_methods.R | 100 +- R/gtfs_subset.R | 70 - R/gtfsio.R | 34 R/gtfsio_error.R | 109 +- R/import_gtfs.R | 931 ++++++++++--------- R/new_gtfs.R | 132 +- R/utils.R | 62 - README.md | 200 ++-- build/vignette.rds |binary data/gtfs_reference.rda |binary inst/doc/gtfsio.R | 258 ++--- inst/doc/gtfsio.Rmd | 406 ++++---- inst/doc/gtfsio.html | 1313 ++++++++++++++-------------- inst/extdata/blank_lines.zip |only inst/extdata/subdirectories.zip |only inst/reference/create_gtfs_reference_data.R | 211 ++-- inst/reference/gtfs-reference-str.txt |only inst/reference/parse_markdown.R | 211 ++-- inst/tinytest/test_assert_gtfs.R | 178 +-- inst/tinytest/test_assert_inputs.R | 374 +++---- inst/tinytest/test_checks.R | 762 ++++++++-------- inst/tinytest/test_export_gtfs.R | 632 ++++++------- inst/tinytest/test_gtfsio_error.R | 172 +-- inst/tinytest/test_import_gtfs.R | 892 +++++++++---------- inst/tinytest/test_new_gtfs.R | 126 +- inst/tinytest/test_print.R | 66 - inst/tinytest/test_subset.R | 44 inst/tinytest/test_summary.R | 58 - man/assert_gtfs.Rd | 74 - man/assert_vector.Rd | 114 +- man/check_field_class.Rd | 114 +- man/check_field_exists.Rd | 88 - man/check_file_exists.Rd | 82 - man/export_gtfs.Rd | 146 +-- man/get_gtfs_standards.Rd | 83 - man/gtfs_reference.Rd | 131 +- man/gtfsio-package.Rd | 84 - man/gtfsio_error.Rd | 51 - man/import_gtfs.Rd | 182 +-- man/new_gtfs.Rd | 122 +- man/parent_function_error.Rd | 51 - man/print.gtfs.Rd | 58 - man/read_files.Rd | 78 - man/read_geojson.Rd | 33 man/sub-.gtfs.Rd | 72 - man/summary.gtfs.Rd | 49 - man/translate_types.Rd | 46 tests/tinytest.R | 12 vignettes/gtfsio.Rmd | 406 ++++---- 60 files changed, 6235 insertions(+), 6221 deletions(-)
Title: Fusing Machine Learning in R
Description: Recent technological advances have enable the simultaneous collection
of multi-omics data i.e., different types or modalities of molecular data,
presenting challenges for integrative prediction modeling due to the heterogeneous,
high-dimensional nature and possible missing modalities of some individuals.
We introduce this package for late integrative prediction modeling, enabling
modality-specific variable selection and prediction modeling, followed by the
aggregation of the modality-specific predictions to train a final meta-model.
This package facilitates conducting late integration predictive modeling in a
systematic, structured, and reproducible way.
Author: Cesaire J. K. Fouodo [aut, cre],
Marina Bleskina [ctb]
Maintainer: Cesaire J. K. Fouodo <cesaire.joris.kuete.fouodo@emory.edu>
This is a re-admission after prior archival of version 0.0.2 dated 2025-10-13
Diff between fuseMLR versions 0.0.2 dated 2025-10-13 and 0.0.4 dated 2026-05-20
DESCRIPTION | 19 ++-- MD5 | 22 ++-- R/Training.R | 7 + README.md | 2 inst/doc/fuseMLR.R | 12 +- inst/doc/fuseMLR.Rmd | 14 ++- inst/doc/fuseMLR.html | 182 ++++++++++++++++++----------------------- man/createTrainMetaLayer.Rd | 2 man/varSelection.Rd | 2 tests/testthat/test-Training.R | 3 tests/testthat/test-VarSel.R | 6 - vignettes/fuseMLR.Rmd | 14 ++- 12 files changed, 146 insertions(+), 139 deletions(-)
Title: Complexity Measures for Supervised Problems
Description: Provides measures to characterize the complexity of classification
and regression problems based on aspects that quantify the linearity of the
data, the presence of informative feature, the sparsity and dimensionality
of the datasets. This package provides bug fixes, generalizations and
implementations of many state of the art measures. The measures are
described in the papers: Lorena et al. (2019) <doi:10.1145/3347711> and
Lorena et al. (2018) <doi:10.1007/s10994-017-5681-1>.
Author: Luis Garcia [aut, cre],
Ana Lorena [aut, ctb],
Marcilio Souto [aut, ctb],
Tin K. Ho [aut, ctb]
Maintainer: Luis Garcia <luis.garcia@unb.br>
Diff between ECoL versions 0.3.0 dated 2019-11-05 and 0.4.4 dated 2026-05-20
ECoL-0.3.0/ECoL/R/overlapping.R |only ECoL-0.3.0/ECoL/man/overlapping.Rd |only ECoL-0.3.0/ECoL/tests/testthat/test_overlapping.R |only ECoL-0.4.4/ECoL/DESCRIPTION | 32 ++++++++--- ECoL-0.4.4/ECoL/LICENSE | 4 - ECoL-0.4.4/ECoL/MD5 | 56 ++++++++++---------- ECoL-0.4.4/ECoL/NAMESPACE | 6 +- ECoL-0.4.4/ECoL/R/balance.R | 14 ++--- ECoL-0.4.4/ECoL/R/complexity.R | 6 +- ECoL-0.4.4/ECoL/R/correlation.R | 16 +++-- ECoL-0.4.4/ECoL/R/dimensionality.R | 16 ++--- ECoL-0.4.4/ECoL/R/feature-based.R |only ECoL-0.4.4/ECoL/R/internal.R | 12 ++-- ECoL-0.4.4/ECoL/R/linearity.R | 37 ++++++------- ECoL-0.4.4/ECoL/R/neighborhood.R | 39 ++++++------- ECoL-0.4.4/ECoL/R/network.R | 18 +++--- ECoL-0.4.4/ECoL/R/smoothness.R | 17 ++---- ECoL-0.4.4/ECoL/man/balance.Rd | 16 +++-- ECoL-0.4.4/ECoL/man/complexity.Rd | 10 +-- ECoL-0.4.4/ECoL/man/correlation.Rd | 22 ++++--- ECoL-0.4.4/ECoL/man/dimensionality.Rd | 18 +++--- ECoL-0.4.4/ECoL/man/featurebased.Rd |only ECoL-0.4.4/ECoL/man/linearity.Rd | 18 +++--- ECoL-0.4.4/ECoL/man/neighborhood.Rd | 24 ++++---- ECoL-0.4.4/ECoL/man/network.Rd | 31 +++++++---- ECoL-0.4.4/ECoL/man/smoothness.Rd | 18 +++--- ECoL-0.4.4/ECoL/tests/testthat/test_balance.R | 24 ++++---- ECoL-0.4.4/ECoL/tests/testthat/test_feature-based.R |only ECoL-0.4.4/ECoL/tests/testthat/test_linearity.R | 6 +- ECoL-0.4.4/ECoL/tests/testthat/test_neighborhood.R | 9 +-- ECoL-0.4.4/ECoL/tests/testthat/test_network.R | 12 ++-- ECoL-0.4.4/ECoL/tests/testthat/test_smoothness.R | 8 +- 32 files changed, 260 insertions(+), 229 deletions(-)
Title: R Toolkit for 'Databricks'
Description: Collection of utilities that improve using 'Databricks' from
R. Primarily functions that wrap specific 'Databricks' APIs
(<https://docs.databricks.com/api>), 'RStudio' connection pane
support, quality of life functions to make 'Databricks' simpler to
use.
Author: Zac Davies [aut, cre],
Rafi Kurlansik [aut],
Databricks [cph, fnd]
Maintainer: Zac Davies <zac@databricks.com>
Diff between brickster versions 0.2.12 dated 2026-02-04 and 0.2.13 dated 2026-05-20
brickster-0.2.12/brickster/man/db_generate_values_sql.Rd |only brickster-0.2.12/brickster/tests/testthat/test-dbfs.R |only brickster-0.2.13/brickster/DESCRIPTION | 10 brickster-0.2.13/brickster/MD5 | 409 +++++----- brickster-0.2.13/brickster/NAMESPACE | 19 brickster-0.2.13/brickster/NEWS.md | 12 brickster-0.2.13/brickster/R/clusters.R | 264 ++++++ brickster-0.2.13/brickster/R/connection-pane.R | 11 brickster-0.2.13/brickster/R/data-structures.R | 86 +- brickster-0.2.13/brickster/R/databricks-dbi.R | 297 ++++--- brickster-0.2.13/brickster/R/databricks-dbplyr.R | 19 brickster-0.2.13/brickster/R/dbfs.R | 124 ++- brickster-0.2.13/brickster/R/execution-context.R | 9 brickster-0.2.13/brickster/R/jobs.R | 100 ++ brickster-0.2.13/brickster/R/libraries.R | 4 brickster-0.2.13/brickster/R/misc-helpers.R | 11 brickster-0.2.13/brickster/R/mlflow-databricks.R | 10 brickster-0.2.13/brickster/R/notebook-helpers.R | 2 brickster-0.2.13/brickster/R/package-auth.R | 345 +++++++- brickster-0.2.13/brickster/R/queries.R | 7 brickster-0.2.13/brickster/R/query-history.R | 1 brickster-0.2.13/brickster/R/remote-repl.R | 5 brickster-0.2.13/brickster/R/repos.R | 5 brickster-0.2.13/brickster/R/request-helpers.R | 25 brickster-0.2.13/brickster/R/secrets.R | 10 brickster-0.2.13/brickster/R/sql-query-execution.R | 6 brickster-0.2.13/brickster/R/vector-search.R | 14 brickster-0.2.13/brickster/R/volume-fs.R | 161 +++ brickster-0.2.13/brickster/R/warehouses.R | 167 ++++ brickster-0.2.13/brickster/R/workspaces.R | 10 brickster-0.2.13/brickster/README.md | 2 brickster-0.2.13/brickster/build/vignette.rds |binary brickster-0.2.13/brickster/inst/doc/cluster-management.html | 5 brickster-0.2.13/brickster/inst/doc/managing-jobs.html | 5 brickster-0.2.13/brickster/inst/doc/remote-repl.html | 5 brickster-0.2.13/brickster/inst/doc/setup-auth.Rmd | 27 brickster-0.2.13/brickster/inst/doc/setup-auth.html | 97 +- brickster-0.2.13/brickster/inst/doc/sql-backend.html | 5 brickster-0.2.13/brickster/inst/doc/working-with-volumes.R |only brickster-0.2.13/brickster/inst/doc/working-with-volumes.Rmd |only brickster-0.2.13/brickster/inst/doc/working-with-volumes.html |only brickster-0.2.13/brickster/man/auth_params.Rd |only brickster-0.2.13/brickster/man/dbConnect-DatabricksDriver-method.Rd | 5 brickster-0.2.13/brickster/man/dbGetQuery-DatabricksConnection-character-method.Rd | 6 brickster-0.2.13/brickster/man/dbSendQuery-DatabricksConnection-character-method.Rd | 5 brickster-0.2.13/brickster/man/dbWriteTable-DatabricksConnection-AsIs-data.frame-method.Rd | 6 brickster-0.2.13/brickster/man/dbWriteTable-DatabricksConnection-Id-data.frame-method.Rd | 6 brickster-0.2.13/brickster/man/dbWriteTable-DatabricksConnection-character-data.frame-method.Rd | 6 brickster-0.2.13/brickster/man/db_cluster_create.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_delete.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_edit.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_events.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_get.Rd | 4 brickster-0.2.13/brickster/man/db_cluster_list.Rd | 5 brickster-0.2.13/brickster/man/db_cluster_list_node_types.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_list_zones.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_perm_delete.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_pin.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_resize.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_restart.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_runtime_versions.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_start.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_terminate.Rd | 3 brickster-0.2.13/brickster/man/db_cluster_unpin.Rd | 3 brickster-0.2.13/brickster/man/db_context_command_cancel.Rd | 3 brickster-0.2.13/brickster/man/db_context_command_run.Rd | 3 brickster-0.2.13/brickster/man/db_context_command_run_and_wait.Rd | 3 brickster-0.2.13/brickster/man/db_context_command_status.Rd | 3 brickster-0.2.13/brickster/man/db_context_create.Rd | 3 brickster-0.2.13/brickster/man/db_context_destroy.Rd | 3 brickster-0.2.13/brickster/man/db_context_manager.Rd | 11 brickster-0.2.13/brickster/man/db_context_status.Rd | 3 brickster-0.2.13/brickster/man/db_dbfs_add_block.Rd | 4 brickster-0.2.13/brickster/man/db_dbfs_close.Rd | 5 brickster-0.2.13/brickster/man/db_dbfs_create.Rd | 5 brickster-0.2.13/brickster/man/db_dbfs_delete.Rd | 3 brickster-0.2.13/brickster/man/db_dbfs_get_status.Rd | 4 brickster-0.2.13/brickster/man/db_dbfs_list.Rd | 5 brickster-0.2.13/brickster/man/db_dbfs_mkdirs.Rd | 6 brickster-0.2.13/brickster/man/db_dbfs_move.Rd | 5 brickster-0.2.13/brickster/man/db_dbfs_put.Rd | 5 brickster-0.2.13/brickster/man/db_dbfs_read.Rd | 5 brickster-0.2.13/brickster/man/db_jobs_create.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_delete.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_get.Rd | 4 brickster-0.2.13/brickster/man/db_jobs_list.Rd | 5 brickster-0.2.13/brickster/man/db_jobs_repair_run.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_reset.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_run_now.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_cancel.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_delete.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_export.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_get.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_get_output.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_list.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_runs_submit.Rd | 3 brickster-0.2.13/brickster/man/db_jobs_update.Rd | 3 brickster-0.2.13/brickster/man/db_libs_all_cluster_statuses.Rd | 3 brickster-0.2.13/brickster/man/db_libs_cluster_status.Rd | 3 brickster-0.2.13/brickster/man/db_libs_install.Rd | 3 brickster-0.2.13/brickster/man/db_libs_uninstall.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_approve_transition_req.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_delete_transition_req.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_open_transition_reqs.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_reject_transition_req.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_transition_req.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_transition_stage.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_version_comment.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_version_comment_delete.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_model_version_comment_edit.Rd | 3 brickster-0.2.13/brickster/man/db_mlflow_registered_model_details.Rd | 3 brickster-0.2.13/brickster/man/db_oauth_client.Rd | 22 brickster-0.2.13/brickster/man/db_perform_request.Rd | 1 brickster-0.2.13/brickster/man/db_perform_response.Rd |only brickster-0.2.13/brickster/man/db_query_create.Rd | 3 brickster-0.2.13/brickster/man/db_query_delete.Rd | 3 brickster-0.2.13/brickster/man/db_query_get.Rd | 3 brickster-0.2.13/brickster/man/db_query_list.Rd | 3 brickster-0.2.13/brickster/man/db_query_update.Rd | 3 brickster-0.2.13/brickster/man/db_repl.Rd | 3 brickster-0.2.13/brickster/man/db_repo_create.Rd | 3 brickster-0.2.13/brickster/man/db_repo_delete.Rd | 3 brickster-0.2.13/brickster/man/db_repo_get.Rd | 3 brickster-0.2.13/brickster/man/db_repo_get_all.Rd | 3 brickster-0.2.13/brickster/man/db_repo_update.Rd | 3 brickster-0.2.13/brickster/man/db_req_error_body.Rd | 1 brickster-0.2.13/brickster/man/db_request.Rd | 1 brickster-0.2.13/brickster/man/db_request_json.Rd | 1 brickster-0.2.13/brickster/man/db_secrets_delete.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_list.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_put.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_acl_delete.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_acl_get.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_acl_list.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_acl_put.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_create.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_delete.Rd | 3 brickster-0.2.13/brickster/man/db_secrets_scope_list_all.Rd | 3 brickster-0.2.13/brickster/man/db_sql_exec_cancel.Rd | 3 brickster-0.2.13/brickster/man/db_sql_exec_query.Rd | 3 brickster-0.2.13/brickster/man/db_sql_exec_result.Rd | 3 brickster-0.2.13/brickster/man/db_sql_exec_status.Rd | 3 brickster-0.2.13/brickster/man/db_sql_global_warehouse_get.Rd | 3 brickster-0.2.13/brickster/man/db_sql_query_history.Rd | 3 brickster-0.2.13/brickster/man/db_sql_warehouse_create.Rd | 3 brickster-0.2.13/brickster/man/db_sql_warehouse_delete.Rd | 3 brickster-0.2.13/brickster/man/db_sql_warehouse_edit.Rd | 3 brickster-0.2.13/brickster/man/db_sql_warehouse_get.Rd | 4 brickster-0.2.13/brickster/man/db_sql_warehouse_list.Rd | 5 brickster-0.2.13/brickster/man/db_sql_warehouse_start.Rd | 3 brickster-0.2.13/brickster/man/db_sql_warehouse_stop.Rd | 3 brickster-0.2.13/brickster/man/db_volume_delete.Rd | 4 brickster-0.2.13/brickster/man/db_volume_dir_create.Rd | 4 brickster-0.2.13/brickster/man/db_volume_dir_delete.Rd | 4 brickster-0.2.13/brickster/man/db_volume_dir_exists.Rd | 4 brickster-0.2.13/brickster/man/db_volume_download_dir.Rd |only brickster-0.2.13/brickster/man/db_volume_file_exists.Rd | 4 brickster-0.2.13/brickster/man/db_volume_list.Rd | 4 brickster-0.2.13/brickster/man/db_volume_list_files_recursive.Rd |only brickster-0.2.13/brickster/man/db_volume_read.Rd | 4 brickster-0.2.13/brickster/man/db_volume_upload_dir.Rd | 6 brickster-0.2.13/brickster/man/db_volume_write.Rd | 4 brickster-0.2.13/brickster/man/db_vs_endpoints_create.Rd | 3 brickster-0.2.13/brickster/man/db_vs_endpoints_delete.Rd | 3 brickster-0.2.13/brickster/man/db_vs_endpoints_get.Rd | 3 brickster-0.2.13/brickster/man/db_vs_endpoints_list.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_create.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_delete.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_delete_data.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_get.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_list.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_query.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_query_next_page.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_scan.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_sync.Rd | 3 brickster-0.2.13/brickster/man/db_vs_indexes_upsert_data.Rd | 3 brickster-0.2.13/brickster/man/db_workspace_delete.Rd | 3 brickster-0.2.13/brickster/man/db_workspace_get_status.Rd | 3 brickster-0.2.13/brickster/man/db_workspace_import.Rd | 3 brickster-0.2.13/brickster/man/db_workspace_list.Rd | 3 brickster-0.2.13/brickster/man/db_workspace_mkdirs.Rd | 3 brickster-0.2.13/brickster/man/db_write_table_volume.Rd | 2 brickster-0.2.13/brickster/man/read_databrickscfg.Rd | 6 brickster-0.2.13/brickster/man/read_env_var.Rd | 6 brickster-0.2.13/brickster/tests/testthat/test-auth.R | 197 ++++ brickster-0.2.13/brickster/tests/testthat/test-clusters-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-clusters.R | 38 brickster-0.2.13/brickster/tests/testthat/test-connection-pane-offline.R |only brickster-0.2.13/brickster/tests/testthat/test-connection-pane.R | 2 brickster-0.2.13/brickster/tests/testthat/test-databricks-dbi-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-databricks-dbi.R | 30 brickster-0.2.13/brickster/tests/testthat/test-databricks-dbplyr-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-execution-contexts-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-execution-contexts.R | 18 brickster-0.2.13/brickster/tests/testthat/test-jobs-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-jobs.R | 2 brickster-0.2.13/brickster/tests/testthat/test-libraries.R | 14 brickster-0.2.13/brickster/tests/testthat/test-misc-helpers.R | 4 brickster-0.2.13/brickster/tests/testthat/test-mlflow-dbrx.R | 26 brickster-0.2.13/brickster/tests/testthat/test-repl.R | 2 brickster-0.2.13/brickster/tests/testthat/test-request-helpers.R | 65 + brickster-0.2.13/brickster/tests/testthat/test-secrets.R | 18 brickster-0.2.13/brickster/tests/testthat/test-sql-execution-helpers-offline.R |only brickster-0.2.13/brickster/tests/testthat/test-uc-catalogs.R | 4 brickster-0.2.13/brickster/tests/testthat/test-uc-schemas.R | 4 brickster-0.2.13/brickster/tests/testthat/test-uc-tables.R | 10 brickster-0.2.13/brickster/tests/testthat/test-uc-volumes.R | 12 brickster-0.2.13/brickster/tests/testthat/test-unity-catalog.R | 26 brickster-0.2.13/brickster/tests/testthat/test-volumes-fs-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-volumes-fs.R | 58 + brickster-0.2.13/brickster/tests/testthat/test-warehouses-offline-helpers.R |only brickster-0.2.13/brickster/tests/testthat/test-warehouses.R | 16 brickster-0.2.13/brickster/tests/testthat/test-workspace-folder.R | 16 brickster-0.2.13/brickster/vignettes/setup-auth.Rmd | 27 brickster-0.2.13/brickster/vignettes/working-with-volumes.Rmd |only 215 files changed, 2639 insertions(+), 733 deletions(-)
Title: A Unified Framework for Identification and Ecological
Interpretation of Microbial Data from Bioenergy Research
Centers
Description: A unified framework for identification and ecological interpretation of core microbiomes across time and space, enhancing robustness and reproducibility in microbiome data analysis. 'BRCore' implements the workflow proposed by Shade and Stopnisek (2019) and incorporates additional rarefaction steps. The proposed workflow aims to identify persistent microbiomes using abundance-occupancy distributions and neutral community model fitting. For more details on abundance-occupancy distributions see Shade A, Stopnisek N (2019) <doi:10.1016/j.mib.2019.09.008>, for neutral models, see Sloan et al. (2006) <doi:10.1111/j.1462-2920.2005.00956.x> and Burns et al. (2015) <doi:10.1038/ismej.2015.142>.
Author: Bolivar Aponte Rolon [aut, cre] ,
Gian Maria Niccolo Benucci [aut] ,
Brandon Kristy [aut] ,
Ashley Shade [aut] ,
Nejc Stopnisek [aut] ,
Adina Howe [aut] ,
Center for Advanced Bioenergy and Bioproducts Innovation [cph, fnd],
Great Lakes Bioenergy Rese [...truncated...]
Maintainer: Bolivar Aponte Rolon <bolaponte@pm.me>
Diff between BRCore versions 2.0.5 dated 2026-05-18 and 2.0.7 dated 2026-05-20
DESCRIPTION | 19 ++++++++++--------- MD5 | 8 ++++---- NEWS.md | 23 ++++++++++++++--------- README.md | 12 +++++++++--- tests/testthat/setup.R | 12 +++++++++++- 5 files changed, 48 insertions(+), 26 deletions(-)
Title: Bayesian Estimation and Forecasting of Age-Specific Rates
Description: Fast Bayesian estimation and forecasting of age-specific
rates, probabilities, and means, based on 'Template Model Builder'.
Author: John Bryant [aut, cre],
Junni Zhang [aut],
Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>
Diff between bage versions 0.10.8 dated 2026-02-22 and 0.10.9 dated 2026-05-20
bage-0.10.8/bage/tests/testthat/manual-checks.R |only bage-0.10.8/bage/tests/testthat/test-simulation-studies.R |only bage-0.10.9/bage/DESCRIPTION | 8 bage-0.10.9/bage/MD5 | 130 - bage-0.10.9/bage/NAMESPACE | 54 bage-0.10.9/bage/NEWS.md | 34 bage-0.10.9/bage/R/accessor-functions.R | 59 bage-0.10.9/bage/R/bage-package.R | 18 bage-0.10.9/bage/R/bage_mod-methods.R | 13 bage-0.10.9/bage/R/bage_prior-constructors.R | 471 +++- bage-0.10.9/bage/R/bage_prior-methods.R | 917 ++++++-- bage-0.10.9/bage/R/check-functions.R | 2 bage-0.10.9/bage/R/fit.R | 4 bage-0.10.9/bage/R/forecast.R | 92 bage-0.10.9/bage/R/make-inputs.R | 65 bage-0.10.9/bage/R/make-outputs.R | 283 -- bage-0.10.9/bage/R/priors.R | 2 bage-0.10.9/bage/R/sim.R | 78 bage-0.10.9/bage/R/util.R | 541 ++-- bage-0.10.9/bage/README.md | 20 bage-0.10.9/bage/build/vignette.rds |binary bage-0.10.9/bage/inst/Matrix-version | 2 bage-0.10.9/bage/inst/TMB-version | 2 bage-0.10.9/bage/inst/doc/vig01_intro.html | 128 - bage-0.10.9/bage/man/AR.Rd | 20 bage-0.10.9/bage/man/AR1.Rd | 18 bage-0.10.9/bage/man/DRW.Rd | 17 bage-0.10.9/bage/man/DRW2.Rd | 19 bage-0.10.9/bage/man/Lin.Rd | 13 bage-0.10.9/bage/man/Lin_AR.Rd | 33 bage-0.10.9/bage/man/Lin_AR1.Rd | 39 bage-0.10.9/bage/man/RW.Rd | 13 bage-0.10.9/bage/man/RW2.Rd | 13 bage-0.10.9/bage/man/RW2_AR.Rd |only bage-0.10.9/bage/man/RW2_AR1.Rd |only bage-0.10.9/bage/man/RW2_Infant.Rd | 13 bage-0.10.9/bage/man/RW2_Seas.Rd | 13 bage-0.10.9/bage/man/RW_Seas.Rd | 13 bage-0.10.9/bage/man/SVD_AR.Rd | 10 bage-0.10.9/bage/man/Sp.Rd | 13 bage-0.10.9/bage/man/bage-package.Rd | 12 bage-0.10.9/bage/man/forecast.bage_mod.Rd | 2 bage-0.10.9/bage/man/generate.bage_prior_ar.Rd | 6 bage-0.10.9/bage/man/priors.Rd | 2 bage-0.10.9/bage/man/reexports.Rd | 2 bage-0.10.9/bage/man/set_covariates.Rd | 2 bage-0.10.9/bage/src/bage.cpp | 137 - bage-0.10.9/bage/tests/README.md |only bage-0.10.9/bage/tests/plots |only bage-0.10.9/bage/tests/simulation |only bage-0.10.9/bage/tests/testthat.R | 14 bage-0.10.9/bage/tests/testthat/_snaps/bage_prior-methods.md | 122 + bage-0.10.9/bage/tests/testthat/test-accessor-functions.R | 57 bage-0.10.9/bage/tests/testthat/test-all-models.R | 7 bage-0.10.9/bage/tests/testthat/test-all-priors.R | 88 bage-0.10.9/bage/tests/testthat/test-bage_prior-constructors.R | 161 + bage-0.10.9/bage/tests/testthat/test-bage_prior-methods.R | 1119 ++++++---- bage-0.10.9/bage/tests/testthat/test-forecast.R | 121 + bage-0.10.9/bage/tests/testthat/test-make-inputs.R | 76 bage-0.10.9/bage/tests/testthat/test-make-outputs.R | 131 - bage-0.10.9/bage/tests/testthat/test-sim.R | 67 bage-0.10.9/bage/tests/testthat/test-util.R | 18 bage-0.10.9/bage/tests/valgrind |only bage-0.10.9/bage/vignettes/articles/vig02_math.Rmd | 573 ++--- bage-0.10.9/bage/vignettes/articles/vig03_priors.Rmd | 454 ++-- bage-0.10.9/bage/vignettes/articles/vig09_covariates.Rmd | 35 66 files changed, 4310 insertions(+), 2066 deletions(-)
Title: An 'Armadillo' Interface
Description: Provides function declarations and inline function definitions that
facilitate communication between R and the 'Armadillo' 'C++' library for
linear algebra and scientific computing. This implementation is derived
from Vargas Sepulveda and Schneider Malamud (2024)
<doi:10.1016/j.softx.2025.102087>.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Jonathan Schneider Malamud [ctb],
Conrad Sanderson [aut] )
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between armadillo4r versions 0.8.0 dated 2026-04-08 and 0.9.0 dated 2026-05-20
DESCRIPTION | 10 MD5 | 138 +- NEWS.md | 13 R/template.R | 5 R/version.R | 23 README.md | 6 build/partial.rdb |binary inst/extdata/src/Makevars.in | 4 inst/include/armadillo4r.hpp | 27 inst/include/armadillo4r/armadillo.hpp | 5 inst/include/armadillo4r/armadillo/BaseCube_meat.hpp | 54 inst/include/armadillo4r/armadillo/Base_meat.hpp | 70 - inst/include/armadillo4r/armadillo/Col_meat.hpp | 4 inst/include/armadillo4r/armadillo/Cube_bones.hpp | 3 inst/include/armadillo4r/armadillo/Cube_meat.hpp | 79 - inst/include/armadillo4r/armadillo/Mat_meat.hpp | 180 +-- inst/include/armadillo4r/armadillo/Row_meat.hpp | 4 inst/include/armadillo4r/armadillo/SpBase_meat.hpp | 8 inst/include/armadillo4r/armadillo/SpMat_meat.hpp | 140 +- inst/include/armadillo4r/armadillo/SpSubview_meat.hpp | 47 inst/include/armadillo4r/armadillo/arma_forward.hpp | 3 inst/include/armadillo4r/armadillo/arma_rng.hpp | 85 + inst/include/armadillo4r/armadillo/arma_version.hpp | 2 inst/include/armadillo4r/armadillo/arrayops_meat.hpp | 6 inst/include/armadillo4r/armadillo/config.hpp | 30 inst/include/armadillo4r/armadillo/config.hpp.cmake | 24 inst/include/armadillo4r/armadillo/constants.hpp | 61 - inst/include/armadillo4r/armadillo/diagview_meat.hpp | 114 + inst/include/armadillo4r/armadillo/diskio_meat.hpp | 38 inst/include/armadillo4r/armadillo/fill.hpp | 31 inst/include/armadillo4r/armadillo/fn_approx_equal.hpp | 14 inst/include/armadillo4r/armadillo/fn_clamp.hpp | 6 inst/include/armadillo4r/armadillo/fn_rande.hpp | 8 inst/include/armadillo4r/armadillo/fn_randg.hpp | 8 inst/include/armadillo4r/armadillo/fn_randi.hpp | 8 inst/include/armadillo4r/armadillo/fn_randn.hpp | 16 inst/include/armadillo4r/armadillo/fn_randu.hpp | 16 inst/include/armadillo4r/armadillo/fn_spsolve.hpp | 6 inst/include/armadillo4r/armadillo/fn_svds.hpp | 4 inst/include/armadillo4r/armadillo/glue_solve_meat.hpp | 6 inst/include/armadillo4r/armadillo/gmm_diag_meat.hpp | 6 inst/include/armadillo4r/armadillo/gmm_full_meat.hpp | 6 inst/include/armadillo4r/armadillo/newarp_SparseGenRealShiftSolve_meat.hpp | 4 inst/include/armadillo4r/armadillo/op_accu_meat.hpp | 8 inst/include/armadillo4r/armadillo/op_clamp_meat.hpp | 22 inst/include/armadillo4r/armadillo/op_expmat_meat.hpp | 2 inst/include/armadillo4r/armadillo/op_htrans_meat.hpp | 1 inst/include/armadillo4r/armadillo/op_mean_bones.hpp | 6 inst/include/armadillo4r/armadillo/op_mean_meat.hpp | 175 ++- inst/include/armadillo4r/armadillo/op_norm2est_meat.hpp | 8 inst/include/armadillo4r/armadillo/op_orth_null_meat.hpp | 8 inst/include/armadillo4r/armadillo/op_pinv_meat.hpp | 8 inst/include/armadillo4r/armadillo/op_rank_meat.hpp | 24 inst/include/armadillo4r/armadillo/op_repmat_meat.hpp | 20 inst/include/armadillo4r/armadillo/op_resize_meat.hpp | 2 inst/include/armadillo4r/armadillo/op_strans_meat.hpp | 1 inst/include/armadillo4r/armadillo/op_vectorise_meat.hpp | 8 inst/include/armadillo4r/armadillo/op_wishrnd_meat.hpp | 4 inst/include/armadillo4r/armadillo/sp_auxlib_meat.hpp | 28 inst/include/armadillo4r/armadillo/spdiagview_meat.hpp | 2 inst/include/armadillo4r/armadillo/subview_bones.hpp | 13 inst/include/armadillo4r/armadillo/subview_cube_each_meat.hpp | 154 +- inst/include/armadillo4r/armadillo/subview_cube_meat.hpp | 84 + inst/include/armadillo4r/armadillo/subview_each_meat.hpp | 278 ++-- inst/include/armadillo4r/armadillo/subview_meat.hpp | 572 +++++++--- inst/include/armadillo4r/armadillo/typedef_elem.hpp | 2 inst/include/armadillo4r/wrappers/sparse_matrices.hpp | 238 ++-- inst/include/update_instructions.md | 18 man/armadillo4r-package.Rd | 3 tests/testthat/test-version.R | 2 70 files changed, 2092 insertions(+), 921 deletions(-)