Title: The Research Data Warehouse of Miguel de Carvalho
Description: Pulls together a collection of datasets from Miguel de Carvalho research articles and books. Including, for example:
- de Carvalho (2012) <doi:10.1016/j.jspi.2011.08.016>;
- de Carvalho et al (2012) <doi:10.1080/03610926.2012.709905>;
- de Carvalho et al (2012) <doi:10.1016/j.econlet.2011.09.007>);
- de Carvalho and Davison (2014) <doi:10.1080/01621459.2013.872651>;
- de Carvalho and Rua (2017) <doi:10.1016/j.ijforecast.2015.09.004>;
- de Carvalho et al (2023) <doi:10.1002/sta4.560>;
- de Carvalho et al (2022) <doi:10.1007/s13253-021-00469-9>;
- Palacios et al (2025) <doi:10.1214/24-BA1420>.
Author: Miguel de Carvalho [aut, cre]
Maintainer: Miguel de Carvalho <Miguel.deCarvalho@ed.ac.uk>
Diff between DATAstudio versions 1.2.3 dated 2026-02-11 and 1.2.4 dated 2026-05-24
DESCRIPTION | 8 +++---- MD5 | 57 +++++++++++++++++++++++++++++++++++----------------- R/dataset.R | 13 ++++++++++- build |only man/AIG.Rd |only man/DATAstudio.Rd | 15 +++++++------ man/alps.Rd | 3 +- man/bournemouth.Rd |only man/california.Rd | 7 ++---- man/china_storm.Rd |only man/crypto.Rd |only man/danube.Rd | 5 +--- man/dataset.Rd | 9 ++++---- man/epilepsy.Rd | 16 +++++++------- man/eurorain.Rd |only man/faang.Rd | 13 +++++------ man/flights.Rd | 27 ++++++++++++------------ man/fort.Rd |only man/heatwaves.Rd |only man/hongkong.Rd | 5 +--- man/hurricane.Rd | 6 ++--- man/kfrench.Rd |only man/landslide.Rd | 8 ++----- man/lisbon.Rd | 7 ++++-- man/logreturns.Rd |only man/loss.Rd | 8 +++---- man/madeira.Rd | 13 +++++++++-- man/maxtemps.Rd |only man/netherlands.Rd |only man/pandemics.Rd |only man/pnw.Rd |only man/rain_germany.Rd |only man/seine.Rd |only man/sp500a.Rd |only man/streamflow.Rd |only man/sydney.Rd | 7 +++++- man/thefts.Rd | 9 ++++---- man/us_torn.Rd |only man/venice.Rd |only man/waveheights.Rd |only 40 files changed, 141 insertions(+), 95 deletions(-)
Title: Interval Estimation by Likelihood Method
Description: Currently used CI method has its limitation when the test statistics are asymmetrical (chi-square test, F-test) or the model functions are non-linear. It can be overcome by using the likelihood functions for the interval estimation. 'inteli' package now supports interval estimation for the mean, variance, variance ratio, binomial distribution, Poisson distribution, odds ratio, risk difference, relative risk and their likelihood function plots. Testing functions are also provided.
Author: Minkyu Kim [aut, cre],
Kyun-Seop Bae [aut]
Maintainer: Minkyu Kim <mkim@acr.kr>
Diff between inteli versions 0.1.2 dated 2026-01-07 and 0.2.0 dated 2026-05-24
DESCRIPTION | 8 +-- MD5 | 34 +++++++-------- R/lib.R | 100 ++++++++++++++++++++-------------------------- R/lim.R | 100 ++++++++++++++++++++-------------------------- R/liod.R | 108 ++++++++++++++++++++++---------------------------- R/lipois.R | 97 ++++++++++++++++++++------------------------ R/lir.R | 101 ++++++++++++++++++++++------------------------ R/lird.R | 103 +++++++++++++++++++++-------------------------- R/lirr.R | 103 +++++++++++++++++++++-------------------------- R/liv.R | 98 ++++++++++++++++++++------------------------- man/inteli-package.Rd | 2 man/lib.Rd | 1 man/lim.Rd | 46 ++++++++++----------- man/liod.Rd | 54 ++++++++++++------------- man/lir.Rd | 50 +++++++++++------------ man/lird.Rd | 54 ++++++++++++------------- man/lirr.Rd | 54 ++++++++++++------------- man/liv.Rd | 48 +++++++++++----------- 18 files changed, 539 insertions(+), 622 deletions(-)
Title: Genetic Analysis Package
Description: As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18.
<doi:10.18637/jss.v023.i08>], it is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it contains functions for
sample size calculations of both population-based and family-based designs, probability
of familial disease aggregation, kinship calculation, statistics in linkage analysis,
and association analysis involving genetic markers including haplotype analysis with or
without environmental covariates. Over years, the package has been developed in-between
many projects hence also in line with the name (gap).
Author: Jing Hua Zhao [aut, cre] ,
Kurt Hornik [ctb],
Brian Ripley [ctb],
Uwe Ligges [ctb],
Achim Zeileis [ctb]
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between gap versions 1.14 dated 2026-02-19 and 1.15.1 dated 2026-05-24
gap-1.14/gap/vignettes/nature-genetics.csl |only gap-1.15.1/gap/ChangeLog | 20 gap-1.15.1/gap/DESCRIPTION | 19 gap-1.15.1/gap/MD5 | 135 +++--- gap-1.15.1/gap/NAMESPACE | 24 + gap-1.15.1/gap/R/ACDE.R |only gap-1.15.1/gap/R/AE3.R | 4 gap-1.15.1/gap/R/ESplot.R | 168 +++++--- gap-1.15.1/gap/R/METAL_forestplot.R | 12 gap-1.15.1/gap/R/ccsize.R | 233 +++++------ gap-1.15.1/gap/R/cs.R | 45 +- gap-1.15.1/gap/R/fbsize.R | 16 gap-1.15.1/gap/R/gap.R | 15 gap-1.15.1/gap/R/gcontrol.R | 2 gap-1.15.1/gap/R/hwe.R | 347 ++++++++++------ gap-1.15.1/gap/R/kin.morgan.R | 2 gap-1.15.1/gap/R/metap.R | 262 ++++++++---- gap-1.15.1/gap/R/metareg.R | 283 ++++++------- gap-1.15.1/gap/R/mhtplot.R | 599 +++++++++++++++++++--------- gap-1.15.1/gap/R/mhtplot.trunc.R | 603 ++++++++++++++++++++--------- gap-1.15.1/gap/R/mhtplot2.R | 70 +-- gap-1.15.1/gap/R/mr.R | 296 ++++++++------ gap-1.15.1/gap/R/mr_forestplot.R | 110 +++-- gap-1.15.1/gap/R/mvmeta.R | 346 ++++++++++++---- gap-1.15.1/gap/R/pbsize.R | 10 gap-1.15.1/gap/R/pedtodot_verbatim.R | 13 gap-1.15.1/gap/R/qqfun.R | 115 +++-- gap-1.15.1/gap/R/qqunif.R | 198 ++++++--- gap-1.15.1/gap/R/utils.R | 2 gap-1.15.1/gap/build/partial.rdb |binary gap-1.15.1/gap/build/vignette.rds |binary gap-1.15.1/gap/data/hg18.rda |binary gap-1.15.1/gap/data/hg19.rda |binary gap-1.15.1/gap/data/hg38.rda |binary gap-1.15.1/gap/inst/REFERENCES.bib | 13 gap-1.15.1/gap/inst/doc/gap.R |only gap-1.15.1/gap/inst/doc/gap.Rmd |only gap-1.15.1/gap/inst/doc/gap.html |only gap-1.15.1/gap/inst/doc/gap_incl.html |only gap-1.15.1/gap/inst/doc/shinygap.Rmd | 5 gap-1.15.1/gap/inst/doc/shinygap.html | 7 gap-1.15.1/gap/inst/nature-genetics.csl |only gap-1.15.1/gap/man/ACDE.Rd |only gap-1.15.1/gap/man/AE3.Rd | 4 gap-1.15.1/gap/man/ESplot.Rd | 93 +++- gap-1.15.1/gap/man/METAL_forestplot.Rd | 1 gap-1.15.1/gap/man/ccsize.Rd | 189 ++++----- gap-1.15.1/gap/man/cs.Rd | 35 + gap-1.15.1/gap/man/fbsize.Rd | 12 gap-1.15.1/gap/man/gap.Rd | 1 gap-1.15.1/gap/man/gcontrol.Rd | 3 gap-1.15.1/gap/man/hg18.Rd | 2 gap-1.15.1/gap/man/hg19.Rd | 2 gap-1.15.1/gap/man/hg38.Rd | 2 gap-1.15.1/gap/man/hmht.control.Rd | 39 + gap-1.15.1/gap/man/hwe.Rd | 160 +++++-- gap-1.15.1/gap/man/kin.morgan.Rd | 2 gap-1.15.1/gap/man/metap.Rd | 176 +++++--- gap-1.15.1/gap/man/metareg.Rd | 138 ++++-- gap-1.15.1/gap/man/mht.control.Rd | 57 +- gap-1.15.1/gap/man/mhtplot.Rd | 311 ++++++++++---- gap-1.15.1/gap/man/mhtplot.trunc.Rd | 179 +++++--- gap-1.15.1/gap/man/mhtplot2.Rd | 47 -- gap-1.15.1/gap/man/mr.Rd | 115 +++-- gap-1.15.1/gap/man/mr_forestplot.Rd | 90 +++- gap-1.15.1/gap/man/mvmeta.Rd | 141 ++++-- gap-1.15.1/gap/man/pbsize.Rd | 10 gap-1.15.1/gap/man/pedtodot_verbatim.Rd | 10 gap-1.15.1/gap/man/qqfun.Rd | 13 gap-1.15.1/gap/man/qqunif.Rd | 42 -- gap-1.15.1/gap/src/pfc.sim.f | 6 gap-1.15.1/gap/vignettes/gap.Rmd |only gap-1.15.1/gap/vignettes/shinygap.Rmd | 5 73 files changed, 3723 insertions(+), 2136 deletions(-)
Title: Fragment Analysis in R
Description: Performs fragment analysis using genetic data coming from capillary electrophoresis machines. These are files with FSA extension which stands for FASTA-type file, and .txt files from Beckman CEQ 8000 system, both contain DNA fragment intensities read by machinery. In addition to visualization, it performs automatic scoring of SSRs (Sample Sequence Repeats; a type of genetic marker very common across the genome) and other type of PCR markers (standing for Polymerase Chain Reaction) in biparental populations such as F1, F2, BC (backcross), and diversity panels (collection of genetic diversity).
Author: Giovanny Covarrubias-Pazaran [aut, cre] ,
Luis Diaz-Garcia [aut],
Brandon Schlautman [aut],
Walter Salazar [aut],
Juan Zalapa [aut]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between Fragman versions 1.0.9 dated 2018-01-14 and 1.1.0 dated 2026-05-24
Fragman-1.0.9/Fragman/data/datalist |only Fragman-1.1.0/Fragman/DESCRIPTION | 32 ++++++++++++++++-------- Fragman-1.1.0/Fragman/MD5 | 19 +++++++------- Fragman-1.1.0/Fragman/R/find.ladder.R | 2 - Fragman-1.1.0/Fragman/R/ladder.info.attach.R | 36 ++++----------------------- Fragman-1.1.0/Fragman/R/read.abif.R | 1 Fragman-1.1.0/Fragman/R/storing.inds.R | 5 ++- Fragman-1.1.0/Fragman/R/utils.R |only Fragman-1.1.0/Fragman/README.md |only Fragman-1.1.0/Fragman/data/my.plants.RData |binary Fragman-1.1.0/Fragman/inst/CITATION | 22 ++++++++++------ Fragman-1.1.0/Fragman/man/read.abif.Rd | 1 12 files changed, 57 insertions(+), 61 deletions(-)
Title: Convenient Functions for Exploratory Data Analysis
Description: A collection of convenient functions to facilitate common tasks in exploratory data analysis.
Some common tasks include generating summary tables of variables,
displaying tables as a 'flextable' or a 'kable' and visualising variables using 'ggplot2'.
Labels stating the source file with run time can be easily generated
for annotation in tables and plots.
Author: Tomas Sou [aut, cre]
Maintainer: Tomas Sou <tomas.sou@carexer.com>
Diff between edar versions 0.0.6 dated 2025-11-25 and 0.0.7 dated 2026-05-24
DESCRIPTION | 13 +-- MD5 | 55 ++++++++------ NAMESPACE | 5 + NEWS.md | 24 ++++++ R/func_all.R | 120 ++++++++++++++++++++++++++++--- R/func_gg.R | 53 ++++++++++--- README.md | 51 +++++-------- man/edar-package.Rd | 1 man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-4-2.png |binary man/figures/README-unnamed-chunk-4-3.png |binary man/figures/README-unnamed-chunk-4-4.png |binary man/figures/README-unnamed-chunk-4-5.png |only man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-5-2.png |binary man/figures/README-unnamed-chunk-5-3.png |binary man/figures/README-unnamed-chunk-5-4.png |binary man/figures/README-unnamed-chunk-5-5.png |only man/figures/README-unnamed-chunk-5-6.png |only man/figures/README-unnamed-chunk-6-1.png |only man/figures/README-unnamed-chunk-6-2.png |only man/figures/README-unnamed-chunk-6-3.png |only man/figures/README-unnamed-chunk-6-4.png |only man/figures/README-unnamed-chunk-6-5.png |only man/geo_cv.Rd |only man/geo_mean.Rd |only man/geo_sd.Rd |only man/ggout.Rd |only man/ggsrc.Rd | 3 man/ggxy.Rd | 14 +-- man/label_src.Rd | 2 man/summ_by.Rd | 15 +++ man/summ_cat.Rd | 6 + man/tab2v.Rd |only 35 files changed, 270 insertions(+), 92 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-25 1.0.10
2015-07-15 1.0.8
2015-01-13 1.0-3
2013-03-29 1.0-2
2011-11-02 1.0-1
2010-12-21 1.0
Title: Nonparametric Bounds for the Average Causal Effect Due to Balke
and Pearl and Extensions
Description: Implementation of the nonparametric bounds for the average
causal effect under an instrumental variable model by Balke and Pearl
(Bounds on Treatment Effects from Studies with Imperfect Compliance,
JASA, 1997, 92, 439, 1171-1176, <doi:10.1080/01621459.1997.10474074>). The package
can calculate bounds for a binary outcome, a binary
treatment/phenotype, and an instrument with either 2 or 3 categories.
The package implements bounds for situations where these 3 variables
are measured in the same dataset (trivariate data) or where the
outcome and instrument are measured in one study and the
treatment/phenotype and instrument are measured in another study
(bivariate data).
Author: Tom Palmer [aut, cre] ,
Roland Ramsahai [aut] ,
Vanessa Didelez [aut] ,
Nuala Sheehan [aut]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
Diff between bpbounds versions 0.1.6 dated 2024-06-13 and 0.1.7 dated 2026-05-24
bpbounds-0.1.6/bpbounds/R/bpbounds-package.r |only bpbounds-0.1.7/bpbounds/DESCRIPTION | 26 bpbounds-0.1.7/bpbounds/MD5 | 34 - bpbounds-0.1.7/bpbounds/NEWS.md | 8 bpbounds-0.1.7/bpbounds/R/bpbounds-package.R |only bpbounds-0.1.7/bpbounds/R/bpbounds.R | 32 - bpbounds-0.1.7/bpbounds/R/bpbounds_calc_tri_z3.R | 13 bpbounds-0.1.7/bpbounds/R/bpbounds_tri_x2y2z2.R | 3 bpbounds-0.1.7/bpbounds/README.md | 2 bpbounds-0.1.7/bpbounds/build/partial.rdb |binary bpbounds-0.1.7/bpbounds/build/vignette.rds |binary bpbounds-0.1.7/bpbounds/inst/doc/bpbounds.R | 37 - bpbounds-0.1.7/bpbounds/inst/doc/bpbounds.Rmd | 66 +- bpbounds-0.1.7/bpbounds/inst/doc/bpbounds.html | 450 ++++++++--------- bpbounds-0.1.7/bpbounds/man/bpbounds-package.Rd | 6 bpbounds-0.1.7/bpbounds/man/bpbounds.Rd | 10 bpbounds-0.1.7/bpbounds/tests/testthat/test-bpbounds.R | 154 +++-- bpbounds-0.1.7/bpbounds/vignettes/bibliography.bib | 5 bpbounds-0.1.7/bpbounds/vignettes/bpbounds.Rmd | 66 +- 19 files changed, 476 insertions(+), 436 deletions(-)
Title: Fast Iterative Filtering (FIF) with Portable FFT Backend
Description: Provides an R interface to a C implementation of Fast Iterative Filtering (FIF)
for decomposing a univariate signal into intrinsic mode functions (IMFs) and a residual.
The package uses Fast Fourier Transform library FFTW, if found. If not, it provides
instructions to install it for your OS. This is recommended, as R's internal fft(), while
avoiding external FFT dependencies, is two orders of magnitude slower. See vignette
'Installing FFTW for RFIF' for RFIF installation instructions.
Author: Chuck Coleman [aut, cre]
Maintainer: Chuck Coleman <cdcoleman113@gmail.com>
This is a re-admission after prior archival of version 1.0.1 dated 2026-04-10
Diff between RFIF versions 1.0.1 dated 2026-04-10 and 1.0.2 dated 2026-05-24
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/install-fftw3l.html | 4 ++-- src/FFT.h | 8 -------- src/Fif.c | 15 ++++++--------- 7 files changed, 21 insertions(+), 28 deletions(-)
Title: Scraper for National Hockey League Data
Description: Scrapes and cleans data from the 'NHL' and 'ESPN' APIs into data.frames and lists. Wraps 125+ endpoints documented in <https://github.com/RentoSaijo/nhlscraper/wiki> from high-level multi-season summaries and award winners to low-level decisecond replays and bookmakers' odds, making them more accessible. Features cleaning and visualization tools, primarily for play-by-plays.
Author: Rento Saijo [aut, cre, cph] ,
Lars Skytte [ctb],
Jack Pallotta [ctb]
Maintainer: Rento Saijo <rentosaijo0527@gmail.com>
Diff between nhlscraper versions 0.6.0 dated 2026-04-07 and 0.6.1 dated 2026-05-24
nhlscraper-0.6.0/nhlscraper/man/dot-html_on_ice_can_override_strength_context.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-html_on_ice_matches_event_actors.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-html_on_ice_matches_late_empty_net.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-html_on_ice_matches_reconstructed_strength.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-html_on_ice_matches_situation_code.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-override_strength_context_from_html.Rd |only nhlscraper-0.6.0/nhlscraper/man/dot-reconstruct_skater_counts_from_penalties.Rd |only nhlscraper-0.6.1/nhlscraper/DESCRIPTION | 6 nhlscraper-0.6.1/nhlscraper/MD5 | 43 nhlscraper-0.6.1/nhlscraper/NAMESPACE | 2 nhlscraper-0.6.1/nhlscraper/NEWS.md | 6 nhlscraper-0.6.1/nhlscraper/R/Clean.R | 16 nhlscraper-0.6.1/nhlscraper/R/Game.R | 1018 +++------- nhlscraper-0.6.1/nhlscraper/R/Load.R | 32 nhlscraper-0.6.1/nhlscraper/R/Skater.R | 13 nhlscraper-0.6.1/nhlscraper/README.md | 2 nhlscraper-0.6.1/nhlscraper/inst/doc/back-to-back-tax.html | 92 nhlscraper-0.6.1/nhlscraper/inst/doc/play-by-play-pipeline.Rmd | 34 nhlscraper-0.6.1/nhlscraper/inst/doc/play-by-play-pipeline.html | 89 nhlscraper-0.6.1/nhlscraper/inst/doc/playoff-size.html | 200 - nhlscraper-0.6.1/nhlscraper/man/shift_chart_summaries.Rd |only nhlscraper-0.6.1/nhlscraper/man/shift_chart_summary.Rd |only nhlscraper-0.6.1/nhlscraper/src/on_ice_shift_timings.c | 6 nhlscraper-0.6.1/nhlscraper/tests/testthat/test-html_on_ice_pbp.R | 161 + nhlscraper-0.6.1/nhlscraper/tests/testthat/test-load_shift_chart_summaries.R |only nhlscraper-0.6.1/nhlscraper/tests/testthat/test-on_ice_shift_timings.R |only nhlscraper-0.6.1/nhlscraper/tests/testthat/test-shift_chart.R | 84 nhlscraper-0.6.1/nhlscraper/vignettes/play-by-play-pipeline.Rmd | 34 28 files changed, 842 insertions(+), 996 deletions(-)
Title: Geolocalização De Endereços Brasileiros (Geocoding Brazilian
Addresses)
Description: Método simples e eficiente de geolocalizar dados no Brasil. O
pacote é baseado em conjuntos de dados espaciais abertos de endereços
brasileiros, utilizando como fonte principal o Cadastro Nacional de Endereços
para Fins Estatísticos (CNEFE). O CNEFE é publicado pelo Instituto Brasileiro
de Geografia e Estatística (IBGE), órgão oficial de estatísticas e geografia
do Brasil. (A simple and efficient method for geolocating data in Brazil. The
package is based on open spatial datasets of Brazilian addresses, primarily
using the Cadastro Nacional de Endereços para Fins Estatísticos (CNEFE),
published by the Instituto Brasileiro de Geografia e Estatística (IBGE),
Brazil's official statistics and geography agency.)
Author: Rafael H. M. Pereira [aut, cre] ,
Daniel Herszenhut [aut] ,
Gabriel Garcia de Almeida [aut] ,
Arthur Bazolli [ctb],
Pedro Milreu Cunha [ctb],
ITpS - Instituto Todos pela Saude [fnd],
Ipea - Instituto de Pesquisa Economica Aplicada [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geocodebr versions 0.6.2 dated 2026-04-13 and 0.6.3 dated 2026-05-24
geocodebr-0.6.2/geocodebr/R/onLoad.R |only geocodebr-0.6.3/geocodebr/DESCRIPTION | 18 geocodebr-0.6.3/geocodebr/MD5 | 55 - geocodebr-0.6.3/geocodebr/NEWS.md | 67 + geocodebr-0.6.3/geocodebr/R/geocode.R | 49 + geocodebr-0.6.3/geocodebr/R/geocode_reverso.R | 65 - geocodebr-0.6.3/geocodebr/README.md | 10 geocodebr-0.6.3/geocodebr/inst/doc/geocode.Rmd | 2 geocodebr-0.6.3/geocodebr/inst/doc/geocode.html | 6 geocodebr-0.6.3/geocodebr/inst/doc/geocode_reverso.Rmd | 2 geocodebr-0.6.3/geocodebr/inst/doc/geocode_reverso.html | 10 geocodebr-0.6.3/geocodebr/inst/doc/geocodebr.R | 2 geocodebr-0.6.3/geocodebr/inst/doc/geocodebr.Rmd | 6 geocodebr-0.6.3/geocodebr/inst/doc/geocodebr.html | 28 geocodebr-0.6.3/geocodebr/inst/extdata/large_sample.parquet |binary geocodebr-0.6.3/geocodebr/inst/extdata/munis_bbox_2022.parquet |binary geocodebr-0.6.3/geocodebr/man/definir_pasta_cache.Rd | 2 geocodebr-0.6.3/geocodebr/man/geocodebr.Rd | 9 geocodebr-0.6.3/geocodebr/tests/tests_rafa/benchmark_20k.R | 13 geocodebr-0.6.3/geocodebr/tests/tests_rafa/generate_sample_data.R | 3 geocodebr-0.6.3/geocodebr/tests/tests_rafa/munis_bbox.R | 86 +- geocodebr-0.6.3/geocodebr/tests/tests_rafa/reverse_geocode_tests.R | 348 ---------- geocodebr-0.6.3/geocodebr/tests/testthat/_snaps/cache.md | 60 - geocodebr-0.6.3/geocodebr/tests/testthat/_snaps/definir_campos.md | 16 geocodebr-0.6.3/geocodebr/tests/testthat/_snaps/message.md | 14 geocodebr-0.6.3/geocodebr/tests/testthat/test-geocode.R | 66 + geocodebr-0.6.3/geocodebr/vignettes/geocode.Rmd | 2 geocodebr-0.6.3/geocodebr/vignettes/geocode_reverso.Rmd | 2 geocodebr-0.6.3/geocodebr/vignettes/geocodebr.Rmd | 6 29 files changed, 372 insertions(+), 575 deletions(-)
Title: Understand and Describe Bayesian Models and Posterior
Distributions
Description: Provides utilities to describe posterior
distributions and Bayesian models. It includes point-estimates such as
Maximum A Posteriori (MAP), measures of dispersion (Highest Density
Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and
indices used for null-hypothesis testing (such as ROPE percentage, pd
and Bayes factors). References: Makowski et al. (2021) <doi:10.21105/joss.01541>.
Author: Dominique Makowski [aut, cre] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Micah K. Wilson [aut] ,
Brenton M. Wiernik [aut] ,
Paul-Christian Buerkner [rev],
Tristan Mahr [rev] ,
Henrik Singmann [ctb] ,
Quentin F. Gron [...truncated...]
Maintainer: Dominique Makowski <officialeasystats@gmail.com>
Diff between bayestestR versions 0.18.0 dated 2026-05-21 and 0.18.1 dated 2026-05-24
DESCRIPTION | 6 MD5 | 18 NEWS.md | 14 R/describe_posterior.R | 642 ++++++++++++++++------------- R/diagnostic_posterior.R | 18 R/mcse.R | 25 + man/contr.equalprior.Rd | 2 man/diagnostic_posterior.Rd | 6 man/mcse.Rd | 16 tests/testthat/test-diagnostic_posterior.R | 10 10 files changed, 453 insertions(+), 304 deletions(-)
Title: Collection of Utility Functions for Data Analysis and Computing
Description: Provides utility functions for data analysis and computing. Includes functions for logging, parallel processing, and other computational tasks to streamline workflows.
Author: Meng Xu [aut, cre] ,
Haoliang Zhu [aut]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisutils versions 0.4.5 dated 2026-04-24 and 0.4.7 dated 2026-05-24
thisutils-0.4.5/thisutils/man/compute_simpson_index.Rd |only thisutils-0.4.7/thisutils/DESCRIPTION | 18 thisutils-0.4.7/thisutils/MD5 | 19 thisutils-0.4.7/thisutils/NAMESPACE | 1 thisutils-0.4.7/thisutils/NEWS.md | 7 thisutils-0.4.7/thisutils/R/RcppExports.R | 8 thisutils-0.4.7/thisutils/R/lisi.R | 271 ----- thisutils-0.4.7/thisutils/man/compute_lisi.Rd | 21 thisutils-0.4.7/thisutils/src/RcppExports.cpp | 25 thisutils-0.4.7/thisutils/src/lisi.cpp | 894 ++++++++++++++--- thisutils-0.4.7/thisutils/tests/testthat/test-lisi.R | 232 +--- 11 files changed, 904 insertions(+), 592 deletions(-)
Title: Model Visualisation Toolbox for 'easystats' and 'ggplot2'
Description: Provides plotting utilities supporting packages in the 'easystats'
ecosystem (<https://github.com/easystats/easystats>) and some extra themes,
geoms, and scales for 'ggplot2'. Color scales are based on
<https://materialui.co/>.
References: Lüdecke et al. (2021) <doi:10.21105/joss.03393>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, inv] ,
Indrajeet Patil [aut] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Remi Theriault [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Jeffrey R. Stevens [ctb] ,
Matthew Smith [ [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between see versions 0.13.0 dated 2026-01-30 and 0.14.0 dated 2026-05-24
DESCRIPTION | 16 MD5 | 51 +-- NAMESPACE | 4 NEWS.md | 22 + R/geom_point2.R | 98 ++++- R/plot.check_dag.R | 2 R/plot.check_model.R | 425 ++++++++++--------------- R/plot.check_normality.R | 24 - R/plot.check_outliers.dots.R | 25 - R/plot.check_predictions.R | 179 ++++++---- R/plot.compare_parameters.R | 81 +--- R/plot.dw_data_tabulate.R | 32 - R/plot.estimate_contrasts.R | 20 - R/plot.p_direction.R | 169 +++++---- R/plot.parameters_pca.R | 76 ++++ R/plot.parameters_pca_graph.R |only R/print.check_model.R | 1 R/utils.R | 6 build/partial.rdb |binary man/geom_point2.Rd | 45 +- man/ggplot2-ggproto.Rd | 1 man/plot.see_parameters_pca.Rd | 49 ++ man/scale_color_okabeito.Rd | 4 man/see-package.Rd | 1 tests/testthat/test-discovr_book.R |only tests/testthat/test-vdiffr_check_model.R | 39 ++ tests/testthat/test-vdiffr_check_predictions.R |only tests/testthat/test-vdiffr_factor_analysis.R |only tests/testthat/test-vdiffr_geoms_borderless.R |only 29 files changed, 810 insertions(+), 560 deletions(-)
Title: The ScottKnott Clustering Algorithm
Description: Performs the Scott & Knott (1974) clustering algorithm as a
multiple comparison method in the Analysis of Variance context, for
both balanced and unbalanced <doi:10.1590/1984-70332017v17n1a1>
designs. Accepts input from 'formula', 'aov', 'lm', 'aovlist', and 'lmerMod'
objects.
Author: J. C. Faria [aut],
E. G. Jelihovschi [aut],
I. B. Allaman [aut, cre]
Maintainer: I. B. Allaman <ivanalaman@gmail.com>
Diff between ScottKnott versions 1.3-3 dated 2025-03-15 and 1.4-0 dated 2026-05-24
ScottKnott-1.3-3/ScottKnott/ChangeLog |only ScottKnott-1.3-3/ScottKnott/man/LS.Rd |only ScottKnott-1.4-0/ScottKnott/DESCRIPTION | 54 +- ScottKnott-1.4-0/ScottKnott/MD5 | 104 ++- ScottKnott-1.4-0/ScottKnott/NAMESPACE | 67 +- ScottKnott-1.4-0/ScottKnott/NEWS.md |only ScottKnott-1.4-0/ScottKnott/R/MaxValue.R | 361 ++++++------- ScottKnott-1.4-0/ScottKnott/R/SK.aovlist.R | 478 ++++++++---------- ScottKnott-1.4-0/ScottKnott/R/SK.default.R | 8 ScottKnott-1.4-0/ScottKnott/R/SK.formula.R | 130 ++-- ScottKnott-1.4-0/ScottKnott/R/SK.lm.R | 367 ++++++------- ScottKnott-1.4-0/ScottKnott/R/SK.lmerMod.R | 388 +++++++------- ScottKnott-1.4-0/ScottKnott/R/SK.nest.aovlist.R | 285 +++++----- ScottKnott-1.4-0/ScottKnott/R/SK.nest.lm.R | 288 +++++----- ScottKnott-1.4-0/ScottKnott/R/SK.nest.lmerMod.R | 289 +++++----- ScottKnott-1.4-0/ScottKnott/R/boxplot.SK.R | 361 ++++++------- ScottKnott-1.4-0/ScottKnott/R/m.infos.lm.R | 14 ScottKnott-1.4-0/ScottKnott/R/m.infos.lmerMod.R | 69 +- ScottKnott-1.4-0/ScottKnott/R/m.infos.nest.lm.R | 14 ScottKnott-1.4-0/ScottKnott/R/m.infos.nest.lmerMod.R | 117 ++-- ScottKnott-1.4-0/ScottKnott/R/plot.SK.R | 182 ++---- ScottKnott-1.4-0/ScottKnott/R/print.SK.R | 22 ScottKnott-1.4-0/ScottKnott/R/summary.SK.R | 31 - ScottKnott-1.4-0/ScottKnott/R/xtable.SK.R | 51 + ScottKnott-1.4-0/ScottKnott/README.md | 121 +++- ScottKnott-1.4-0/ScottKnott/build |only ScottKnott-1.4-0/ScottKnott/demo/00Index | 14 ScottKnott-1.4-0/ScottKnott/demo/CRD.R | 139 +++-- ScottKnott-1.4-0/ScottKnott/demo/FE.R | 66 +- ScottKnott-1.4-0/ScottKnott/demo/LSD.R | 49 + ScottKnott-1.4-0/ScottKnott/demo/RCBD.R | 61 +- ScottKnott-1.4-0/ScottKnott/demo/SPE.R | 86 +-- ScottKnott-1.4-0/ScottKnott/demo/SPET.R | 97 +-- ScottKnott-1.4-0/ScottKnott/demo/SSPE.R | 90 +-- ScottKnott-1.4-0/ScottKnott/inst/CITATION | 46 - ScottKnott-1.4-0/ScottKnott/inst/doc |only ScottKnott-1.4-0/ScottKnott/man/CRD1.Rd | 4 ScottKnott-1.4-0/ScottKnott/man/CRD2.Rd | 4 ScottKnott-1.4-0/ScottKnott/man/FE.Rd | 6 ScottKnott-1.4-0/ScottKnott/man/LSD.Rd |only ScottKnott-1.4-0/ScottKnott/man/RCBD.Rd | 6 ScottKnott-1.4-0/ScottKnott/man/SK.Rd | 128 ++-- ScottKnott-1.4-0/ScottKnott/man/SPE.Rd | 10 ScottKnott-1.4-0/ScottKnott/man/SSPE.Rd | 12 ScottKnott-1.4-0/ScottKnott/man/ScottKnott-package.Rd | 206 +++---- ScottKnott-1.4-0/ScottKnott/man/boxplot.SK.Rd | 203 +++---- ScottKnott-1.4-0/ScottKnott/man/plot.SK.Rd | 57 +- ScottKnott-1.4-0/ScottKnott/man/print.SK.Rd | 12 ScottKnott-1.4-0/ScottKnott/man/sorghum.Rd | 26 ScottKnott-1.4-0/ScottKnott/man/summary.Rd | 11 ScottKnott-1.4-0/ScottKnott/man/xtable.Rd |only ScottKnott-1.4-0/ScottKnott/man/xtable.SK.Rd | 35 - ScottKnott-1.4-0/ScottKnott/tests |only ScottKnott-1.4-0/ScottKnott/vignettes |only 54 files changed, 2693 insertions(+), 2476 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), this package implements
features like bootstrapping or simulating of parameters and models,
feature reduction (feature extraction and variable selection) as well
as functions to describe data and variable characteristics (e.g.
skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Soeren Hoejsgaard [aut],
Brenton M. Wiernik [aut] ,
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] ,
Jeffrey Girard [ctb] ,
Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between parameters versions 0.29.0 dated 2026-05-09 and 0.29.1 dated 2026-05-24
DESCRIPTION | 10 MD5 | 65 +- NEWS.md | 19 R/1_model_parameters.R | 14 R/3_p_value.R | 41 - R/4_standard_error.R | 6 R/bootstrap_model.R | 68 +- R/bootstrap_parameters.R | 49 + R/format.R | 747 ++++++++++--------------- R/methods_aod.R | 44 - R/methods_brms.R | 105 ++- R/methods_htest.R | 122 ++-- R/methods_nestedLogit.R | 155 ++--- R/methods_plm.R | 63 +- R/utils_model_parameters.R | 160 ++--- man/bootstrap_model.Rd | 2 man/model_parameters.compare.loo.Rd | 2 man/model_parameters.default.Rd | 11 man/model_parameters.glimML.Rd | 4 man/p_function.Rd | 2 man/parameters-package.Rd | 1 man/principal_components.Rd | 4 man/reexports.Rd | 6 man/standardize_info.Rd | 4 man/standardize_parameters.Rd | 4 tests/testthat/test-brms.R | 32 + tests/testthat/test-coxph.R | 1 tests/testthat/test-discovr_book.R |only tests/testthat/test-factor_analysis.R | 33 - tests/testthat/test-glmer.R | 29 tests/testthat/test-glmmTMB.R | 19 tests/testthat/test-model_parameters.mixed.R | 104 ++- tests/testthat/test-random_effects_covstruct.R | 5 tests/testthat/test-serp.R | 8 34 files changed, 1045 insertions(+), 894 deletions(-)
Title: Conventional Tukey Test
Description: Performs multiple comparison analyses using Tukey's
Honestly Significant Difference (HSD) test, with intuitive letter
grouping of means for balanced and unbalanced designs. Accepts
input from 'formula', 'aov', 'lm', 'aovlist', and 'lmerMod' objects,
including straightforward handling of interactions. For more
details see Tukey (1949) <doi:10.2307/3001913>.
Author: J. C. Faria [aut],
E. G. Jelihovschi [aut],
I. B. Allaman [aut, cre]
Maintainer: I. B. Allaman <ivanalaman@gmail.com>
Diff between TukeyC versions 1.3-44 dated 2026-02-25 and 1.4-0 dated 2026-05-24
TukeyC-1.3-44/TukeyC/ChangeLog |only TukeyC-1.4-0/TukeyC/DESCRIPTION | 58 ++- TukeyC-1.4-0/TukeyC/MD5 | 111 ++++--- TukeyC-1.4-0/TukeyC/NAMESPACE | 2 TukeyC-1.4-0/TukeyC/NEWS.md |only TukeyC-1.4-0/TukeyC/R/TukeyC.R | 2 TukeyC-1.4-0/TukeyC/R/TukeyC.aovlist.R | 297 ++++++++++-------- TukeyC-1.4-0/TukeyC/R/TukeyC.default.R | 13 TukeyC-1.4-0/TukeyC/R/TukeyC.formula.R | 129 ++++---- TukeyC-1.4-0/TukeyC/R/TukeyC.lm.R | 317 ++++++++++---------- TukeyC-1.4-0/TukeyC/R/TukeyC.lmerMod.R | 329 +++++++++++--------- TukeyC-1.4-0/TukeyC/R/TukeyC.nest.aovlist.R | 143 ++++----- TukeyC-1.4-0/TukeyC/R/TukeyC.nest.lm.R | 156 +++++---- TukeyC-1.4-0/TukeyC/R/TukeyC.nest.lmerMod.R | 156 +++++---- TukeyC-1.4-0/TukeyC/R/boxplot.TukeyC.R | 408 ++++++++++++++------------ TukeyC-1.4-0/TukeyC/R/cv.R | 71 ++-- TukeyC-1.4-0/TukeyC/R/m.infos.aovlist.R | 57 ++- TukeyC-1.4-0/TukeyC/R/m.infos.lm.R | 63 ++-- TukeyC-1.4-0/TukeyC/R/m.infos.lmerMod.R | 66 ++-- TukeyC-1.4-0/TukeyC/R/m.infos.nest.aovlist.R | 100 +++--- TukeyC-1.4-0/TukeyC/R/m.infos.nest.lm.R | 94 +++-- TukeyC-1.4-0/TukeyC/R/m.infos.nest.lmerMod.R | 106 +++--- TukeyC-1.4-0/TukeyC/R/make.TukeyC.groups.R | 169 ++++++---- TukeyC-1.4-0/TukeyC/R/make.TukeyC.test.R | 160 +++++----- TukeyC-1.4-0/TukeyC/R/plot.TukeyC.R | 372 +++++++++++++---------- TukeyC-1.4-0/TukeyC/R/print.TukeyC.R | 36 +- TukeyC-1.4-0/TukeyC/R/summary.TukeyC.R | 31 + TukeyC-1.4-0/TukeyC/R/tukeyc-utils.R |only TukeyC-1.4-0/TukeyC/R/xtable.TukeyC.R | 63 +++- TukeyC-1.4-0/TukeyC/README.md | 106 +++++- TukeyC-1.4-0/TukeyC/build |only TukeyC-1.4-0/TukeyC/demo/CRD.R | 18 - TukeyC-1.4-0/TukeyC/demo/RCBD.R | 4 TukeyC-1.4-0/TukeyC/demo/SPE.R | 8 TukeyC-1.4-0/TukeyC/demo/SPET.R | 16 - TukeyC-1.4-0/TukeyC/demo/SSPE.R | 18 - TukeyC-1.4-0/TukeyC/inst/doc |only TukeyC-1.4-0/TukeyC/man/CRD2.Rd | 2 TukeyC-1.4-0/TukeyC/man/FE.Rd | 2 TukeyC-1.4-0/TukeyC/man/LS.Rd | 4 TukeyC-1.4-0/TukeyC/man/RCBD.Rd | 4 TukeyC-1.4-0/TukeyC/man/SPE.Rd | 2 TukeyC-1.4-0/TukeyC/man/SSPE.Rd | 2 TukeyC-1.4-0/TukeyC/man/TukeyC-package.Rd | 26 - TukeyC-1.4-0/TukeyC/man/TukeyC.Rd | 45 +- TukeyC-1.4-0/TukeyC/man/boxplot.TukeyC.Rd | 14 TukeyC-1.4-0/TukeyC/man/cv.Rd | 12 TukeyC-1.4-0/TukeyC/man/make.TukeyC.groups.Rd | 37 +- TukeyC-1.4-0/TukeyC/man/make.TukeyC.test.Rd | 55 +-- TukeyC-1.4-0/TukeyC/man/plot.TukeyC.Rd | 24 - TukeyC-1.4-0/TukeyC/man/print.TukeyC.Rd | 12 TukeyC-1.4-0/TukeyC/man/summary.Rd | 16 - TukeyC-1.4-0/TukeyC/man/xtable.Rd |only TukeyC-1.4-0/TukeyC/man/xtable.TukeyC.Rd | 49 +-- TukeyC-1.4-0/TukeyC/tests |only TukeyC-1.4-0/TukeyC/vignettes |only 56 files changed, 2222 insertions(+), 1763 deletions(-)
Title: Aggregate Matrix Population Models
Description: Aggregates matrix population models (MPMs) in both the lambda (stable
growth rate) and R0 (net reproductive rate) frameworks, including standard and
elasticity-consistent aggregators. Standard aggregation in the lambda framework
maintains consistent lambda and stable stage distribution, while standard aggregation
in the R0 framework maintains consistent R0 and cohort stable stage distribution.
Elasticity-consistent aggregators maintain these same consistencies with respect
to the chosen framework and additionally preserve consistent reproductive values in
the lambda framework and cohort reproductive values in the R0 framework. Aggregation
can take the form of general-to-general MPM (mpm_aggregate) or Leslie-to-Leslie
MPM (leslie_aggregate).
Author: Richard A. Hinrichsen [aut, cre] ,
Roberto Salguero-Gomez [aut] ,
Hiroyuki Yokomizo [aut]
Maintainer: Richard A. Hinrichsen <r.hinrichsen.ecology@gmail.com>
Diff between mpmaggregate versions 0.2.5 dated 2026-04-03 and 0.2.6 dated 2026-05-24
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ README.md | 14 ++++++++++---- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 7 ++++--- man/mpmaggregate-package.Rd | 1 + 8 files changed, 35 insertions(+), 19 deletions(-)
Title: Likelihood-Based Statistical Inference in the Fisherian
Tradition
Description: Facilitates building likelihood models in the Fisherian tradition
following Richard Royall (1997, ISBN:978-0412044113) "Statistical Evidence: A
Likelihood Paradigm". Defines generic methods for working with likelihoods
(loglik(), score(), hess_loglik(), fim()) and provides functions for pure
likelihood-based inference (support(), relative_likelihood(),
likelihood_interval(), profile_loglik()).
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <lex@metafunctor.com>
Diff between likelihood.model versions 1.0.0 dated 2026-03-19 and 1.0.1 dated 2026-05-24
DESCRIPTION | 6 +- MD5 | 14 +++--- NEWS.md | 27 ++++++++++++ R/core-generics.R | 19 +++++++-- inst/doc/exponential-lifetime.html | 2 inst/doc/getting-started.html | 2 man/fim.likelihood_model.Rd | 17 +++++++- tests/test.R | 77 ++++++++++++++++++++++++++++++++++--- 8 files changed, 142 insertions(+), 22 deletions(-)
More information about likelihood.model at CRAN
Permanent link
Title: Health Geography Toolbox for Model-Based Analysis of Infections
Panel Data
Description: Within epidemic outbreaks, infections grow and decline differently between regions, and the velocity of spatial spread differs between countries. The swash library offers a set of model-based analyses for these topics. Spread velocity may be analysed with the Swash-Backwash Model for the Single Epidemic Wave and corresponding functions for bootstrap confidence intervals, country comparison, and visualization of results. Differences in epidemic growth between regions may be analysed using logistic growth models, exponential growth models, Hawkes processes and breakpoint analyses. All functionalities are accessed by the class "infpan" for infections panel data defined in this package, which is built from a data.frame provided by the user.
Author: Thomas Wieland [aut, cre]
Maintainer: Thomas Wieland <geowieland@googlemail.com>
Diff between swash versions 2.0.0 dated 2026-04-06 and 2.0.1 dated 2026-05-24
DESCRIPTION | 8 ++-- MD5 | 74 +++++++++++++++++++------------------- NEWS.md | 19 +-------- build/partial.rdb |binary data/C19dNUTSdata.rda |binary data/COVID19Cases_geoRegion.rda |binary data/Infections.rda |binary data/Oesterreich_Faelle.rda |binary data/RKI_Corona_counties.rda |binary data/did_fatalities_splm_coef.rda |binary man/COVID19Cases_geoRegion.Rd | 13 +++++- man/Oesterreich_Faelle.Rd | 14 ++++++- man/as_balanced.Rd | 8 +++- man/binary_metrics.Rd | 2 - man/binary_metrics_glm.Rd | 4 +- man/breaks_growth.Rd | 8 ++-- man/calculate_Rt.Rd | 6 +++ man/calculate_cum-method.Rd | 3 + man/calculate_rollsum-method.Rd | 2 - man/compare_countries.Rd | 14 ++++++- man/countries-class.Rd | 5 +- man/did_fatalities_splm_coef.Rd | 19 +++++++++ man/expgrowth-class.Rd | 2 - man/exponential_growth.Rd | 4 +- man/growth.Rd | 2 - man/growth_breaks.Rd | 2 - man/growthmodels-class.Rd | 6 +-- man/hawkes-class.Rd | 6 +-- man/hawkes_growth.Rd | 2 - man/infpan-class.Rd | 2 + man/load_infections_paneldata.Rd | 2 - man/logistic_growth.Rd | 2 - man/metrics.Rd | 2 - man/nbmatrix.Rd | 2 - man/plot-methods.Rd | 10 +++-- man/print-methods.Rd | 10 ++--- man/sbm-class.Rd | 4 -- man/swash-package.Rd | 26 ++++++++----- 38 files changed, 170 insertions(+), 113 deletions(-)
Title: Exploratory Data Analysis for the 'spatstat' Family
Description: Functionality for exploratory data analysis and nonparametric analysis of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Warick Brown [cph],
Achmad Choiruddin [ctb],
Ya-Mei Chang [ctb],
Jean-Francois Coeurjolly [ctb],
Lucia Cobo Sanchez [ctb, cph],
Ottma [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.explore versions 3.8-0 dated 2026-03-22 and 3.8-1 dated 2026-05-24
DESCRIPTION | 16 MD5 | 118 +++--- NAMESPACE | 8 NEWS | 126 +++++++ R/Kest.R | 11 R/Kinhom.R | 12 R/Kmeasure.R | 42 +- R/Kmulti.R | 16 R/Kmulti.inhom.R | 12 R/Kscaled.R | 11 R/Ksector.R | 10 R/bw.pcf.R | 5 R/bw.stoyan.R | 37 +- R/circdensity.R | 23 - R/density.ppp.R | 25 - R/density.psp.R | 6 R/densityHeat.ppp.R | 13 R/edgeRipley.R | 12 R/envelopeEngine.R | 27 + R/fv.R | 8 R/localK.R | 7 R/localKcross.R | 7 R/markcorr.R | 5 R/nnorient.R | 4 R/pairorient.R | 13 R/pcf.R | 214 ++++++++---- R/pcfinhom.R | 46 +- R/pcfmulti.R | 52 ++ R/pcfmulti.inhom.R | 55 ++- R/plot.fv.R | 35 + R/rose.R | 692 ++++++++++++++++++++++++++------------- R/wtdclosepair.R | 7 build/partial.rdb |binary inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/Smooth.ppp.Rd | 18 - man/as.fv.Rd | 16 man/bw.stoyan.Rd | 57 ++- man/circdensity.Rd | 18 - man/density.ppp.Rd | 19 + man/density.psp.Rd | 15 man/edge.Ripley.Rd | 21 - man/edge.Trans.Rd | 3 man/macros/defns.Rd | 1 man/nnorient.Rd | 14 man/pcf.ppp.Rd | 75 +++- man/pcfcross.Rd | 5 man/pcfcross.inhom.Rd | 5 man/pcfdot.Rd | 5 man/pcfdot.inhom.Rd | 5 man/pcfinhom.Rd | 39 +- man/pcfmulti.Rd | 14 man/pcfmulti.inhom.Rd | 24 + man/plot.fv.Rd | 3 man/relrisk.ppp.Rd | 12 man/rose.Rd | 225 ++++++++++-- man/spatstat.explore-internal.Rd | 35 + man/spatstat.explore-package.Rd | 2 src/ripleypoly.h | 16 tests/testsD.R | 13 60 files changed, 1693 insertions(+), 644 deletions(-)
More information about spatstat.explore at CRAN
Permanent link
Title: Clinical Publication
Description: Accelerate the process from clinical data to medical publication,
including clinical data cleaning, significant result screening, and the
generation of publish-ready tables and figures.
Author: Yue Niu [aut, cre, cph] ,
Keyun Wang [aut]
Maintainer: Yue Niu <niuyuesam@163.com>
Diff between clinpubr versions 1.3.0 dated 2026-03-07 and 1.4.0 dated 2026-05-24
DESCRIPTION | 17 MD5 | 115 - NAMESPACE | 2 NEWS.md | 12 R/baseline_table.R | 13 R/check_nonnum.R | 2 R/classif_model_compare.R | 2 R/combine_files.R | 2 R/data_overview.R | 14 R/data_screen.R | 43 R/exclusion_count.R | 9 R/extract_num.R | 64 R/get_valid_subset.R | 348 ++- R/initial_cleaning.R | 144 + R/merge.R | 1048 +++++++++- R/misc.R | 8 R/predictor_effect_plot.R | 4 R/regressions.R | 16 R/time_roc.R | 19 R/to_date.R | 59 R/unit_standardize.R | 355 ++- README.md | 3 build |only inst |only man/auto_encoding_repair.Rd |only man/detect_outliers.Rd | 94 man/first_mode.Rd | 2 man/get_valid_subset.Rd | 23 man/keep_by_keyword.Rd | 110 - man/merge_by_range.Rd |only man/merge_by_substring.Rd | 23 man/regression_scan.Rd | 2 man/screen_data_list.Rd | 290 +- man/time_roc_plot.Rd | 11 man/unit_standardize.Rd | 5 man/unit_view.Rd | 5 man/value_initial_cleaning.Rd | 12 tests/testthat/_snaps/predictor_effect_plot/predictor-effect-logistic-categorical-sex.svg | 4 tests/testthat/_snaps/regressions.md | 40 tests/testthat/test-check_nonnum.R | 3 tests/testthat/test-data_overview.R | 539 ++--- tests/testthat/test-data_screen.R | 86 tests/testthat/test-exclusion_count.R | 9 tests/testthat/test-get_valid_subset.R | 184 + tests/testthat/test-initial_cleaning.R | 214 +- tests/testthat/test-mark_outlier.R | 276 +- tests/testthat/test-merge.R | 257 ++ tests/testthat/test-misc.R | 2 tests/testthat/test-multichoice.R | 14 tests/testthat/test-regressions.R | 3 tests/testthat/test-unit_standardize.R | 3 vignettes |only 52 files changed, 3312 insertions(+), 1198 deletions(-)
Title: Utility Functions for Plotting
Description: Provides utility functions for plotting. Includes functions for color manipulation, plot customization, panel size control, data optimization for plots, and layout adjustments.
Author: Meng Xu [aut, cre] ,
Haoliang Zhu [aut]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisplot versions 0.3.8 dated 2026-04-24 and 0.4.0 dated 2026-05-24
DESCRIPTION | 31 ++++++++++++++----------- MD5 | 14 ++++++----- NAMESPACE | 1 NEWS.md | 10 ++++++++ R/DimDataPlot.R |only R/StatPlot.R | 64 ++++++++++++++++++++++++++++++++++++++++++++++++++--- R/reexports.R | 8 +++++- man/DimDataPlot.Rd |only man/StatPlot.Rd | 7 +++-- 9 files changed, 108 insertions(+), 27 deletions(-)
Title: Profile Boosting Framework for Parametric Models
Description: A profile boosting framework for feature selection in parametric models.
It offers a unified interface pboost() and several wrapped models, including linear model, generalized linear models, quantile regression, Cox proportional hazards model, beta regression, spatial auto-regressive models.
Author: Zengchao Xu [aut, cre, cph]
Maintainer: Zengchao Xu <zengc.xu@aliyun.com>
Diff between pboost versions 0.4.8 dated 2026-05-13 and 0.4.11 dated 2026-05-24
DESCRIPTION | 11 ++-- MD5 | 70 ++++++++++++++++--------------- NAMESPACE | 19 +++++++- NEWS.md | 23 ++++++++++ R/fbetareg.R | 3 - R/fcoxph.R | 3 - R/fglm.R | 7 --- R/flm.R | 7 --- R/frq.R | 74 +++++++++++++++++++++++++++++++-- R/frs.R | 4 - R/fsar.R | 103 ++++++++++++++++++++++++++++++++++++---------- R/pbetareg.R | 4 - R/pboost-package.R | 4 + R/pboost.R | 6 +- R/pcoxph.R | 4 - R/penalization.R | 3 - R/penalty-glmnet.R | 4 - R/penalty-ncvreg.R | 4 - R/penalty-rq.R | 4 - R/penalty-sar.R | 2 R/pglm.R | 12 +---- R/plm.R | 16 ++----- R/prq.R | 69 ++++++++++++++++++++++++++++-- R/psar.R | 100 +++++++++++++++++++++++++++++++++++++------- build/partial.rdb |binary man/coef.penaltyglmnet.Rd |only man/coef.penaltyncvreg.Rd |only man/coef.penaltyrq.Rd |only man/frq.Rd | 23 ++++++++++ man/frs.Rd | 6 +- man/fsar.Rd | 59 ++++++++++++++++++++++++-- man/pboost-package.Rd | 5 ++ man/pboost.Rd | 6 +- man/penalization.Rd |only man/pglm.Rd | 4 - man/plm.Rd | 8 +-- man/prq.Rd | 26 ++++++++++- man/psar.Rd | 80 ++++++++++++++++++++++++++++++----- 38 files changed, 603 insertions(+), 170 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-06-23 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-31 0.0.5
Title: Random Generation Functionality for the 'spatstat' Family
Description: Functionality for random generation of spatial data in the 'spatstat' family of packages.
Generates random spatial patterns of points according to many simple rules (complete spatial randomness,
Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns
(thinning, random shift, jittering), simulated realisations of random point processes including
simple sequential inhibition, Matern inhibition models, Neyman-Scott cluster processes
(using direct, Brix-Kendall, or hybrid algorithms),
log-Gaussian Cox processes, product shot noise cluster processes
and Gibbs point processes (using Metropolis-Hastings birth-death-shift algorithm,
alternating Gibbs sampler, or coupling-from-the-past perfect simulation).
Also generates random spatial patterns of line segments,
random tessellations, and random images (random noise, random mosaics).
Excludes random generation on a linear network,
which is covered by the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Tilman Davies [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb, cph],
David Bryant [ctb, cph],
Ya-Mei Chang [ctb, cph],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Dominic Sc [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.random versions 3.4-5 dated 2026-03-22 and 3.5-0 dated 2026-05-24
DESCRIPTION | 16 ++--- MD5 | 31 +++++----- NAMESPACE | 17 +++++ NEWS | 28 +++++++++ R/clusterinfo.R | 55 ++++++++++++++---- R/random.R | 61 ++++++++++++++++++++ R/rdiffuse.R |only R/truncpois.R | 117 +++++++++++++++++++++++++++++++++++++++- build/partial.rdb |binary inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/macros/defns.Rd | 1 man/rUnround.Rd |only man/rdiffuse.Rd |only man/rpoistrunc.Rd | 45 ++++++++++++--- man/spatstat.random-internal.Rd | 5 + man/spatstat.random-package.Rd | 33 ++++++++--- tests/Random.R | 91 ++++++++++++++++++++++++++++++- 18 files changed, 446 insertions(+), 56 deletions(-)
More information about spatstat.random at CRAN
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