Title: Visualisation and Annotation of 360 Degree Imagery
Description: Provides a customisable R 'shiny' app for immersively
visualising, mapping and annotating panospheric (360 degree) imagery.
The flexible interface allows annotation of any geocoded images using
up to 4 user specified drop-down menus. The app uses 'leaflet' to
render maps that display the geo-locations of images and Panellum
<https://pannellum.org/>, a lightweight panorama viewer for the web,
to render images in virtual 360 degree viewing mode. Key functions
include the ability to draw on & export parts of 360 images for
downstream applications. Users can also draw polygons and points on
map imagery related to the panoramic images and export them for
further analysis. Downstream applications include using annotations to
train Artificial Intelligence/Machine Learning (AI/ML) models and
geospatial modelling and analysis of camera based survey data.
Author: Nunzio Knerr [aut, cre] ,
Robert Godfree [aut] ,
Matthew Petroff [ctb],
CSIRO [cph]
Maintainer: Nunzio Knerr <Nunzio.Knerr@csiro.au>
Diff between pannotator versions 1.0.1 dated 2026-03-16 and 1.1.0 dated 2026-05-25
pannotator-1.0.1/pannotator/R/utils-pipe.R |only pannotator-1.0.1/pannotator/man/pipe.Rd |only pannotator-1.1.0/pannotator/DESCRIPTION | 18 pannotator-1.1.0/pannotator/MD5 | 93 pannotator-1.1.0/pannotator/NAMESPACE | 2 pannotator-1.1.0/pannotator/NEWS.md | 15 pannotator-1.1.0/pannotator/R/app_config.R | 407 ++ pannotator-1.1.0/pannotator/R/app_server.R | 26 pannotator-1.1.0/pannotator/R/app_ui.R | 694 ++++ pannotator-1.1.0/pannotator/R/exiftool_support.R |only pannotator-1.1.0/pannotator/R/fct_helpers.R | 1089 +++++-- pannotator-1.1.0/pannotator/R/lookup_validation.R |only pannotator-1.1.0/pannotator/R/mod_360_image.R | 712 ++--- pannotator-1.1.0/pannotator/R/mod_annotation_table.R |only pannotator-1.1.0/pannotator/R/mod_control_form.R | 1404 +--------- pannotator-1.1.0/pannotator/R/mod_leaflet_map.R | 386 +- pannotator-1.1.0/pannotator/R/mod_panel_host.R |only pannotator-1.1.0/pannotator/R/mod_settings.R |only pannotator-1.1.0/pannotator/R/panel_registry.R |only pannotator-1.1.0/pannotator/R/project_settings_export.R |only pannotator-1.1.0/pannotator/R/run_app.R | 29 pannotator-1.1.0/pannotator/R/runtime_context.R |only pannotator-1.1.0/pannotator/R/tour.R |only pannotator-1.1.0/pannotator/README.md | 52 pannotator-1.1.0/pannotator/build/vignette.rds |binary pannotator-1.1.0/pannotator/inst/WORDLIST | 98 pannotator-1.1.0/pannotator/inst/app/www/Pannellum_license.txt | 36 pannotator-1.1.0/pannotator/inst/app/www/helpfiles/kml_overlay_loader_help.md | 60 pannotator-1.1.0/pannotator/inst/app/www/helpfiles/kmz_file_loader_help.md | 50 pannotator-1.1.0/pannotator/inst/app/www/helpfiles/lookup_csv_help.md | 72 pannotator-1.1.0/pannotator/inst/app/www/helpfiles/lookup_label_help.md | 68 pannotator-1.1.0/pannotator/inst/app/www/helpfiles/lookup_pdf_help.md | 78 pannotator-1.1.0/pannotator/inst/app/www/helpfiles/user_name_csv_help.md | 74 pannotator-1.1.0/pannotator/inst/doc/pannotator.R | 12 pannotator-1.1.0/pannotator/inst/doc/pannotator.Rmd | 407 +- pannotator-1.1.0/pannotator/inst/doc/pannotator.html | 439 +-- pannotator-1.1.0/pannotator/inst/golem-config.yml | 2 pannotator-1.1.0/pannotator/man/run_app.Rd | 13 pannotator-1.1.0/pannotator/tests/testthat/test-annotation-table.R |only pannotator-1.1.0/pannotator/tests/testthat/test-app.R | 6 pannotator-1.1.0/pannotator/tests/testthat/test-control-form.R |only pannotator-1.1.0/pannotator/tests/testthat/test-exiftool-support.R |only pannotator-1.1.0/pannotator/tests/testthat/test-fct_helpers.R | 208 + pannotator-1.1.0/pannotator/tests/testthat/test-golem-recommended.R | 17 pannotator-1.1.0/pannotator/tests/testthat/test-image-panel.R |only pannotator-1.1.0/pannotator/tests/testthat/test-map-panel.R |only pannotator-1.1.0/pannotator/tests/testthat/test-panel-layout.R |only pannotator-1.1.0/pannotator/tests/testthat/test-project-settings-export.R |only pannotator-1.1.0/pannotator/tests/testthat/test-runtime-context.R |only pannotator-1.1.0/pannotator/tests/testthat/test-settings-csv-editors.R |only pannotator-1.1.0/pannotator/tests/testthat/test-settings-tour.R |only pannotator-1.1.0/pannotator/vignettes/Images/Figure10_small.jpg |only pannotator-1.1.0/pannotator/vignettes/Images/Figure11_small.jpg |only pannotator-1.1.0/pannotator/vignettes/Images/Figure12_small.jpg |only pannotator-1.1.0/pannotator/vignettes/Images/Figure1_small.jpg |only pannotator-1.1.0/pannotator/vignettes/Images/Figure2_small.jpg |only pannotator-1.1.0/pannotator/vignettes/Images/Figure3_small.jpg |only pannotator-1.1.0/pannotator/vignettes/Images/Figure4_small.jpg |only pannotator-1.1.0/pannotator/vignettes/Images/Figure5_small.jpg |only pannotator-1.1.0/pannotator/vignettes/Images/Figure6_small.jpg |only pannotator-1.1.0/pannotator/vignettes/Images/Figure7_small.jpg |only pannotator-1.1.0/pannotator/vignettes/Images/Figure8_small.jpg |only pannotator-1.1.0/pannotator/vignettes/Images/Figure9_small.jpg |only pannotator-1.1.0/pannotator/vignettes/pannotator.Rmd | 407 +- 64 files changed, 3746 insertions(+), 3228 deletions(-)
Title: Network Analysis for Omics Data
Description: Comprehensive network analysis package.
Calculate correlation network fastly, accelerate lots of analysis by parallel computing.
Support for multi-omics data, search sub-nets fluently.
Handle bigger data, more than 10,000 nodes in each omics.
Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize.
Provide comprehensive topology indexes calculation, including ecological network stability.
Author: Chen Peng [aut, cre]
Maintainer: Chen Peng <bfzede@gmail.com>
Diff between MetaNet versions 0.3.1 dated 2026-04-27 and 0.3.2 dated 2026-05-25
MetaNet-0.3.1/MetaNet/man/figures/MetaNet_GA.jpg |only MetaNet-0.3.2/MetaNet/DESCRIPTION | 6 MetaNet-0.3.2/MetaNet/MD5 | 10 MetaNet-0.3.2/MetaNet/R/MetaNet-package.R | 2 MetaNet-0.3.2/MetaNet/README.md | 403 +++++++++++--------- MetaNet-0.3.2/MetaNet/inst/doc/MetaNet.html | 4 MetaNet-0.3.2/MetaNet/man/figures/MetaNet_GA_v2.png |only 7 files changed, 240 insertions(+), 185 deletions(-)
Title: Pathwise Estimation of Covariate Balancing Propensity Scores
Description: Provides pathwise estimation of regularized logistic propensity
score models using covariate balancing loss functions rather than maximum
likelihood. Regularization paths are fit via the 'adelie' elastic-net
solver with a 'glmnet'-like interface, yielding balancing weights that target
covariate balance for the ATE and ATT. Under lasso penalization, lambda
bounds the maximum covariate imbalance, so the regularization path traces a
sequence of decreasing imbalance tolerances. For details, see Sverdrup &
Hastie (2026) <doi:10.48550/arXiv.2602.18577>.
Author: Erik Sverdrup [aut, cre],
Trevor Hastie [aut],
James Yang [ctb]
Maintainer: Erik Sverdrup <erik.sverdrup@monash.edu>
Diff between balnet versions 0.0.2 dated 2026-05-04 and 0.0.3 dated 2026-05-25
DESCRIPTION | 17 ++-- MD5 | 20 ++-- NAMESPACE | 6 + R/balnet.R | 106 ++++++++++++++++++++++---- R/cv.balnet.R | 13 +++ inst/include/adelie_ext/solver_cbps_naive.hpp | 2 man/balnet.Rd | 6 - man/balweights.Rd | 20 +++- man/coef.balnet.Rd | 13 ++- man/predict.balnet.Rd | 4 man/summary.balnet.Rd |only man/summary.cv.balnet.Rd |only 12 files changed, 163 insertions(+), 44 deletions(-)
Title: Geographical Risk Analysis Based on Habitat Connectivity
Description: The 'geohabnet' package is designed to perform a geographically or spatially explicit risk analysis of habitat connectivity. Xing et al (2021) <doi:10.1093/biosci/biaa067> proposed the concept of cropland connectivity as a risk factor for plant pathogen or pest invasions. As the functions in 'geohabnet' were initially developed thinking on cropland connectivity, users are recommended to first be familiar with the concept by looking at the Xing et al paper. In a nutshell, a habitat connectivity analysis combines information from maps of host density, estimates the relative likelihood of pathogen movement between habitat locations in the area of interest, and applies network analysis to calculate the connectivity of habitat locations.
The functions of 'geohabnet' are built to conduct a habitat connectivity analysis relying on geographic parameters (spatial resolution and spatial extent), dispersal parameters (in two commonly used dispersal kernels: inverse power law and negative ex [...truncated...]
Author: Krishna Keshav [aut, cre],
Aaron Plex [aut] ,
Garrett Lab [ctb] ,
Karen Garrett [aut] ,
University of Florida [cph, fnd]
Maintainer: Krishna Keshav <krishnakeshav.pes@gmail.com>
Diff between geohabnet versions 2.2 dated 2025-05-21 and 2.3 dated 2026-05-25
DESCRIPTION | 8 +- MD5 | 50 +++++++------ NAMESPACE | 1 R/connectivity.R | 40 +++++------ R/geo_network.R | 40 +++++------ R/geo_rasters.R | 20 ++--- R/gplot.R | 6 - R/maps.R | 62 ++++++++++------- R/riskmap.R | 68 ++++++++++++++---- R/sean.R | 134 +++++++++++++++++++++---------------- README.md | 14 +-- inst/defaultParams.yaml | 4 - inst/extdata |only inst/parameters.yaml | 4 - man/GeoNetwork-class.Rd | 16 ++-- man/GeoRasters-class.Rd | 2 man/Gmap-class.Rd | 14 +-- man/RiskMap-class.Rd | 16 ---- man/dot-indices.Rd | 6 - man/habitat_density-set.Rd | 2 man/hci_diff.Rd | 4 - man/hci_mean.Rd | 8 +- man/hci_variance.Rd | 5 + man/sa_onrasters.Rd | 17 +++- man/sean.Rd | 79 +++++++++++++-------- tests/testthat/params.yaml | 6 - tests/testthat/test-mseanExample.R |only 27 files changed, 355 insertions(+), 271 deletions(-)
Title: Bayesian Estimation of the Temporal and Spatio-Temporal ETAS
Models for Earthquake Occurrences
Description: The Epidemic Type Aftershock Sequence (ETAS) model is widely
used for modelling and forecasting earthquake occurrences. This package
implements Bayesian estimation routines for both the temporal and spatial ETAS
model, allowing samples to be drawn from the full posterior distribution
of the model parameters given an earthquake catalogue. The methods are
described in Ross (2021) "Bayesian Estimation of the ETAS Model for
Earthquake Occurrences" <doi:10.1785/0120200198>.
Author: Gordon J. Ross [aut, cre]
Maintainer: Gordon J. Ross <gordon@gordonjross.co.uk>
Diff between bayesianETAS versions 2.0.0 dated 2026-05-21 and 2.0.1 dated 2026-05-25
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- src/etas.cpp | 28 +++++++++++++++++++--------- src/etas.h |only src/init.c | 25 +++++++++---------------- 5 files changed, 35 insertions(+), 31 deletions(-)
Title: Frequency Distribution Tables, Histograms and Polygons
Description: Perform frequency distribution tables, associated histograms
and polygons from vector, data.frame and matrix objects for
numerical and categorical variables.
Author: J. C. Faria [aut, cre],
I. B. Allaman [aut],
E. G. Jelihovschi [aut]
Maintainer: J. C. Faria <joseclaudio.faria@gmail.com>
Diff between fdth versions 1.3-4 dated 2026-05-11 and 1.5-0 dated 2026-05-25
DESCRIPTION | 27 +- MD5 | 127 +++++---- NAMESPACE | 44 ++- NEWS.md | 76 +++++ R/fdt-utils.R |only R/fdt.data.frame.R | 24 - R/fdt.default.R | 34 +- R/fdt.matrix.R | 16 - R/fdt_cat.data.frame.R | 8 R/fdt_cat.default.R | 8 R/fdt_cat.matrix.R | 10 R/make.fdt.R | 26 - R/make.fdt.format.classes.R | 17 - R/make.fdt.multiple.R | 35 +- R/make.fdt.simple.R | 24 - R/make.fdt_cat.R | 20 - R/make.fdt_cat.multiple.R | 8 R/make.fdt_cat.simple.R | 2 R/median.fdt.R | 6 R/mfv.fdt_cat.R | 5 R/mfv.fdt_cat.multiple.R | 36 +- R/plot.fdt.default.R | 408 ++++++++++++++----------------- R/plot.fdt.multiple.R | 363 ++++++++++++++------------- R/plot.fdt_cat.default.R | 252 +++++++++---------- R/plot.fdt_cat.multiple.R | 85 +++--- R/print.fdt.default.R | 49 +-- R/print.fdt.multiple.R | 20 - R/print.fdt_cat.default.R | 30 -- R/print.fdt_cat.multiple.R | 16 - R/quantile.fdt.R | 38 +- R/sd.fdt.R | 17 - R/summary.fdt.default.R | 51 +-- R/summary.fdt.multiple.R | 20 - R/summary.fdt_cat.default.R | 33 -- R/summary.fdt_cat.multiple.R | 18 - R/xtable.fdt.R | 34 +- R/xtable.fdt.multiple.R | 34 +- R/xtable.fdt_cat.multiple.R | 22 - README.md | 5 build/vignette.rds |binary inst/doc/fdth_intro.R |only inst/doc/fdth_intro.Rmd |only inst/doc/fdth_intro.html |only inst/doc/latex_fdt.R | 30 -- inst/doc/latex_fdt.Rnw | 30 -- inst/doc/latex_fdt.pdf |binary man/fdt.Rd | 117 ++++---- man/fdt_cat.Rd | 64 ++-- man/fdth-package.Rd | 288 ++++++++++++--------- man/make.fdt.Rd | 24 - man/mean.fdt.Rd | 18 - man/median.fdt.Rd | 18 - man/mfv.Rd | 34 +- man/plot.Rd | 373 ++++++++++++++-------------- man/print.Rd | 170 ++++++------ man/quantile.fdt.Rd | 108 ++++---- man/sd.Rd | 18 - man/summary.Rd | 170 ++++++------ man/var.Rd | 18 - man/xtable.fdt.Rd | 42 +-- tests/testthat/test-fdt-cat.R |only tests/testthat/test-fdt-data-frame.R |only tests/testthat/test-mean-median-var-sd.R |only tests/testthat/test-quantile-mfv.R | 20 - tests/testthat/test-summary-pattern.R | 5 vignettes/fdth_intro.Rmd |only vignettes/latex_fdt-concordance.tex |only vignettes/latex_fdt.Rnw | 30 -- vignettes/latex_fdt.fdb_latexmk |only vignettes/latex_fdt.fls |only 70 files changed, 1856 insertions(+), 1769 deletions(-)
Title: Spy on Your R Session
Description: Conveniently log everything you type into the R console. Logs are
are stored as tidy data frames which can then be analyzed using 'tidyverse'
style tools.
Author: Sean Kross [aut, cre] ,
Lucy D'Agostino McGowan [aut] ,
Jeff Leek [ldr]
Maintainer: Sean Kross <sean@seankross.com>
Diff between matahari versions 0.1.3 dated 2020-02-06 and 0.1.4 dated 2026-05-25
DESCRIPTION | 19 + MD5 | 22 +- NEWS.md | 6 R/dance.R | 2 README.md | 2 build/vignette.rds |binary inst/doc/matahari.R | 78 ++++---- inst/doc/matahari.Rmd | 31 ++- inst/doc/matahari.html | 351 +++++++++++++++++++++--------------- man/dance_recital.Rd | 2 tests/testthat/test_dance_recital.R | 26 +- vignettes/matahari.Rmd | 31 ++- 12 files changed, 348 insertions(+), 222 deletions(-)
Title: Ab Initio Uncertainty Quantification
Description: Uncertainty quantification and inverse estimation by probabilistic generative models from the beginning of the data analysis. An example is a Fourier basis method for inverse estimation in scattering analysis of microscopy videos. It does not require specifying a certain range of Fourier bases and it substantially reduces computational cost via the generalized Schur algorithm. See the reference: Mengyang Gu, Yue He, Xubo Liu and Yimin Luo (2023), <doi:10.48550/arXiv.2309.02468>.
Author: Yue He [aut],
Xubo Liu [aut],
Tong Lin [aut],
Mengyang Gu [aut, cre]
Maintainer: Mengyang Gu <mengyang@pstat.ucsb.edu>
Diff between AIUQ versions 0.5.3 dated 2024-07-02 and 0.5.4 dated 2026-05-25
CHANGELOG | 4 DESCRIPTION | 14 MD5 | 94 ++-- NAMESPACE | 1 R/SAM.R | 126 ++++- R/SAM_model_free_workflow.R |only R/aniso_SAM.R | 12 R/functions.R | 163 ++++--- R/functions_model_free.R |only R/structure.R | 93 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/AIUQ.R | 46 ++ inst/doc/AIUQ.Rmd | 63 ++ inst/doc/AIUQ.html | 362 +++++++++-------- inst/extdata |only man/AIUQ-package.Rd | 3 man/Get_Gp_Gpp_GSER.Rd |only man/SAM-class.Rd | 20 man/SAM.Rd | 138 +++++- man/SAM_Dqt.Rd | 4 man/aniso_SAM-class.Rd | 10 man/aniso_SAM.Rd | 12 man/aniso_simulation-class.Rd | 10 man/anisotropic_bm_particle_intensity.Rd | 2 man/anisotropic_fbm_ou_particle_intensity.Rd | 2 man/anisotropic_fbm_particle_intensity.Rd | 2 man/anisotropic_numerical_msd.Rd | 2 man/anisotropic_ou_particle_intensity.Rd | 2 man/bm_particle_intensity.Rd | 2 man/fbm_ou_particle_intensity.Rd | 2 man/fbm_particle_intensity.Rd | 2 man/fill_intensity.Rd | 10 man/get_MSD.Rd | 12 man/get_MSD_with_grad.Rd | 12 man/get_dqt.Rd | 2 man/get_est_parameters_MSD_SAM_interval.Rd | 12 man/get_est_parameters_MSD_SAM_interval_anisotropic.Rd | 12 man/get_isf.Rd | 2 man/l2_estAB.Rd | 4 man/l2_fixedAB.Rd | 4 man/numerical_msd.Rd | 2 man/ou_particle_intensity.Rd | 2 man/param_uncertainty.Rd | 12 man/param_uncertainty_anisotropic.Rd | 8 man/plot_intensity.Rd | 10 man/simulation-class.Rd | 10 man/theta_est_l2_dqt_estAB.Rd | 4 man/theta_est_l2_dqt_fixedAB.Rd | 4 vignettes/AIUQ.Rmd | 63 ++ 50 files changed, 899 insertions(+), 477 deletions(-)
Title: Font Metrics and Font Management Utilities for R Graphics
Description: Compute text metrics (width, ascent, descent) using 'Cairo'
and 'FreeType', independently of the active graphic device. Font
lookup is delegated to 'systemfonts'. Additional utilities let users
register 'Google Fonts' or bundled 'Liberation' fonts, check font
availability, and assemble 'htmlDependency' objects so that fonts are
correctly embedded in 'Shiny' applications, 'R Markdown' documents,
and 'htmlwidgets' outputs such as 'ggiraph'.
Author: David Gohel [aut, cre],
Hadley Wickham [aut],
Lionel Henry [aut],
Jeroen Ooms [aut] ,
Yixuan Qiu [ctb],
R Core Team [cph] ,
ArData [cph],
RStudio [cph]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between gdtools versions 0.5.0 dated 2026-02-09 and 0.5.1 dated 2026-05-25
DESCRIPTION | 8 ++-- MD5 | 58 +++++++++++++++++------------------ NEWS.md | 8 ++++ R/font-caching.R | 32 +++++++++++++------ R/font_set.R | 4 +- R/liberation.R | 12 +++---- README.md | 36 +++++++++++++++++++++ configure | 2 - man/addGFontHtmlDependency.Rd | 24 +++++++------- man/font_google.Rd | 10 +++--- man/font_liberation.Rd | 10 +++--- man/font_set.Rd | 10 +++--- man/font_set_auto.Rd | 10 +++--- man/font_set_liberation.Rd | 10 +++--- man/fonts_cache_dir.Rd | 24 +++++++------- man/gfontHtmlDependency.Rd | 24 +++++++------- man/install_gfont_script.Rd | 24 +++++++------- man/installed_gfonts.Rd | 24 +++++++------- man/liberationmonoHtmlDependency.Rd | 24 +++++++------- man/liberationsansHtmlDependency.Rd | 24 +++++++------- man/liberationserifHtmlDependency.Rd | 24 +++++++------- man/m_str_extents.Rd | 6 +-- man/register_gfont.Rd | 24 +++++++------- man/register_liberationmono.Rd | 24 +++++++------- man/register_liberationsans.Rd | 24 +++++++------- man/register_liberationserif.Rd | 24 +++++++------- man/str_metrics.Rd | 6 +-- man/strings_sizes.Rd | 6 +-- tests/testthat/test-fonts.R | 2 - tests/testthat/test-utils.R | 11 ++++++ 30 files changed, 298 insertions(+), 231 deletions(-)
Title: Biplot Analysis for Multivariate Data Using Principal Components
Description: Provides tools for creating 2D and 3D biplots of multivariate data
based on principal components analysis, together with diagnostics for
reduction quality and enhanced visualization of variables and objects.
Author: Jose C. Faria [aut, cre],
Ivan B. Allaman [aut],
Clarice G. B. Demetrio [aut]
Maintainer: Jose C. Faria <joseclaudio.faria@gmail.com>
Diff between bpca versions 1.4-3 dated 2026-05-11 and 1.5-0 dated 2026-05-25
DESCRIPTION | 11 MD5 | 84 ++-- NAMESPACE | 2 NEWS.md | 26 + R/bpca-utils.R |only R/bpca.R | 5 R/bpca.default.R | 252 ++++++------- R/bpca.prcomp.R | 38 +- R/dt.tools.R | 86 ++-- R/plot.bpca.2d.R | 754 ++++++++-------------------------------- R/plot.bpca.2d.helpers.R |only R/plot.bpca.2d.types.R |only R/plot.bpca.3d.R | 451 +++++++++++++---------- R/plot.qbpca.R | 190 +++++----- R/print.xtable.bpca.R | 281 ++++++++------ R/qbpca.R | 32 + R/summary.bpca.R | 97 +++-- R/var.rbf.R | 35 - R/var.rdf.R | 68 ++- R/xtable.bpca.R | 66 ++- demo/bpca-dinamic-3d.R | 45 +- demo/bpca-static-2d.R | 29 - demo/bpca-static-3d.R | 43 +- demo/bpca.R | 469 +++++++++++++++--------- demo/dt-tools.R | 15 demo/gge-check.R | 28 - demo/iris-var-rd.R | 90 +++- demo/iris.R | 82 ++-- demo/rock-var-rd.R | 45 +- demo/var-rb-2d.R | 67 ++- demo/var-rb-3d.R | 75 ++- demo/var-rd-2d.R | 81 ++-- inst/doc/bpca-overview.Rmd | 76 ++-- inst/doc/bpca-overview.html | 242 ++++++------ inst/doc/latex-bpca.Rnw | 4 inst/doc/latex-bpca.pdf |binary man/bpca-package.Rd | 25 + man/bpca.Rd | 25 + man/plot.Rd | 67 ++- man/summary.bpca.Rd | 36 + man/var.rdf.Rd | 16 tests/bpca-Ex.R |only tests/testthat/test-bpca-core.R | 402 ++++++++++++++++++++- vignettes/bpca-overview.Rmd | 76 ++-- vignettes/latex-bpca.Rnw | 4 45 files changed, 2537 insertions(+), 1983 deletions(-)
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Author: Jari Oksanen [aut, cre] ,
Gavin L. Simpson [aut] ,
F. Guillaume Blanchet [aut],
Roeland Kindt [aut],
Pierre Legendre [aut],
Peter R. Minchin [aut],
R.B. O'Hara [aut],
Peter Solymos [aut],
M. Henry H. Stevens [aut],
Eduard Szoecs [aut],
Helene Wagner [...truncated...]
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between vegan versions 2.7-3 dated 2026-03-04 and 2.7-5 dated 2026-05-25
vegan-2.7-3/vegan/R/zzz.R |only vegan-2.7-5/vegan/DESCRIPTION | 49 ++++---- vegan-2.7-5/vegan/MD5 | 127 ++++++++++------------ vegan-2.7-5/vegan/NEWS.md | 59 ++++++++++ vegan-2.7-5/vegan/R/add1.cca.R | 7 - vegan-2.7-5/vegan/R/anosim.R | 3 vegan-2.7-5/vegan/R/cascadeKM.R | 12 +- vegan-2.7-5/vegan/R/estaccumR.R | 5 vegan-2.7-5/vegan/R/mantel.R | 4 vegan-2.7-5/vegan/R/mantel.partial.R | 4 vegan-2.7-5/vegan/R/metaMDSiter.R | 4 vegan-2.7-5/vegan/R/mrpp.R | 3 vegan-2.7-5/vegan/R/oecosimu.R | 3 vegan-2.7-5/vegan/R/ordiArrowTextXY.R | 2 vegan-2.7-5/vegan/R/ordiR2step.R | 14 +- vegan-2.7-5/vegan/R/ordiareatest.R | 3 vegan-2.7-5/vegan/R/ordiellipse.R | 19 +-- vegan-2.7-5/vegan/R/ordihull.R | 20 +-- vegan-2.7-5/vegan/R/ordipointlabel.R | 8 - vegan-2.7-5/vegan/R/ordistep.R | 6 - vegan-2.7-5/vegan/R/permutest.betadisper.R | 5 vegan-2.7-5/vegan/R/permutest.cca.R | 3 vegan-2.7-5/vegan/R/plot.cascadeKM.R | 46 +++---- vegan-2.7-5/vegan/R/plot.cca.R | 2 vegan-2.7-5/vegan/R/plot.envfit.R | 3 vegan-2.7-5/vegan/R/plot.renyi.R | 1 vegan-2.7-5/vegan/R/plot.renyiaccum.R | 2 vegan-2.7-5/vegan/R/print.wcmdscale.R | 12 +- vegan-2.7-5/vegan/R/scores.cca.R | 6 - vegan-2.7-5/vegan/R/scores.decorana.R | 6 - vegan-2.7-5/vegan/R/scores.default.R | 7 - vegan-2.7-5/vegan/R/scores.envfit.R | 24 +++- vegan-2.7-5/vegan/R/scores.metaMDS.R | 7 - vegan-2.7-5/vegan/R/scores.rda.R | 5 vegan-2.7-5/vegan/R/text.ordiplot.R | 13 +- vegan-2.7-5/vegan/build/partial.rdb |binary vegan-2.7-5/vegan/build/vignette.rds |binary vegan-2.7-5/vegan/inst/doc/FAQ-vegan.Rmd | 26 ++++ vegan-2.7-5/vegan/inst/doc/FAQ-vegan.html | 22 +++ vegan-2.7-5/vegan/inst/doc/decision-vegan.R | 2 vegan-2.7-5/vegan/inst/doc/decision-vegan.pdf |binary vegan-2.7-5/vegan/inst/doc/diversity-vegan.R | 67 +++++------ vegan-2.7-5/vegan/inst/doc/diversity-vegan.Rnw | 16 -- vegan-2.7-5/vegan/inst/doc/diversity-vegan.pdf |binary vegan-2.7-5/vegan/inst/doc/intro-vegan.R | 2 vegan-2.7-5/vegan/inst/doc/intro-vegan.pdf |binary vegan-2.7-5/vegan/inst/doc/partitioning.R | 2 vegan-2.7-5/vegan/inst/doc/partitioning.pdf |binary vegan-2.7-5/vegan/man/biplot.rda.Rd | 6 - vegan-2.7-5/vegan/man/decorana.Rd | 4 vegan-2.7-5/vegan/man/envfit.Rd | 8 - vegan-2.7-5/vegan/man/metaMDS.Rd | 11 + vegan-2.7-5/vegan/man/monoMDS.Rd | 9 - vegan-2.7-5/vegan/man/ordiArrowTextXY.Rd | 9 - vegan-2.7-5/vegan/man/ordihull.Rd | 2 vegan-2.7-5/vegan/man/ordipointlabel.Rd | 7 - vegan-2.7-5/vegan/man/plot.cca.Rd | 11 + vegan-2.7-5/vegan/man/radfit.Rd | 4 vegan-2.7-5/vegan/man/renyi.Rd | 10 + vegan-2.7-5/vegan/man/scores.Rd | 4 vegan-2.7-5/vegan/man/specpool.Rd | 2 vegan-2.7-5/vegan/man/vegan-deprecated-lattice.Rd | 6 - vegan-2.7-5/vegan/man/wcmdscale.Rd | 5 vegan-2.7-5/vegan/vignettes/FAQ-vegan.Rmd | 26 ++++ vegan-2.7-5/vegan/vignettes/diversity-vegan.Rnw | 16 -- 65 files changed, 451 insertions(+), 320 deletions(-)
Title: A More Scalable Alternative to Venn and Euler Diagrams for
Visualizing Intersecting Sets
Description: Creates visualizations of intersecting sets using a novel matrix
design, along with visualizations of several common set, element and attribute
related tasks (Conway 2017) <doi:10.1093/bioinformatics/btx364>.
Author: Jake Conway [aut],
Nils Gehlenborg [aut, cre]
Maintainer: Nils Gehlenborg <nils@hms.harvard.edu>
Diff between UpSetR versions 1.4.0 dated 2019-05-22 and 1.4.1 dated 2026-05-25
DESCRIPTION | 25 - MD5 | 28 - R/MainBar.R | 17 - R/upset.R | 22 - README.md | 6 build/vignette.rds |binary inst/doc/attribute.plots.R | 14 inst/doc/attribute.plots.html | 529 +++++++++++++++++++++++++++-------- inst/doc/basic.usage.R | 22 - inst/doc/basic.usage.html | 477 +++++++++++++++++++++++++------- inst/doc/queries.R | 16 - inst/doc/queries.html | 472 ++++++++++++++++++++++++-------- inst/doc/set.metadata.plots.R | 28 - inst/doc/set.metadata.plots.html | 574 +++++++++++++++++++++++++++++---------- man/upset.Rd | 77 +++-- 15 files changed, 1720 insertions(+), 587 deletions(-)
Title: Detection and Localization of Executable Files
Description: A set of functions to locate some programs available on the
user machine. It can locate 'Node.js', 'npm', 'LibreOffice',
'Microsoft Word', 'Microsoft PowerPoint', 'Microsoft Excel', 'Python',
'pip', 'Mozilla Firefox', 'Google Chrome', 'Air' and 'Pandoc'. The
user can test the availability of a program, optionally with a
required version, and call it with the functions system2() or
system(). This allows the use of a single function to retrieve the
path to a program regardless of the operating system and its
configuration.
Author: David Gohel [aut, cre],
ArData [cph]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between locatexec versions 0.1.1 dated 2021-05-19 and 0.2.0 dated 2026-05-25
DESCRIPTION | 41 ++-- MD5 | 66 +++--- NAMESPACE | 4 NEWS.md | 10 + R/absolute_path.R | 7 R/detect_os.R | 7 R/exec_available.R | 12 + R/exec_locate.R | 476 ++++++++++++++++++++++++++++++++++-------------- R/exec_paths.R | 30 +++ R/exec_version.R | 7 R/read_version.R | 32 ++- R/utils.R | 179 +++++++++++++----- README.md | 61 +++--- man/air_exec.Rd |only man/chrome_exec.Rd | 22 +- man/excel_exec.Rd | 22 +- man/exec_available.Rd | 8 man/exec_locate.Rd | 7 man/exec_version.Rd | 6 man/firefox_exec.Rd | 22 +- man/is_osx.Rd | 6 man/is_unix.Rd | 6 man/is_windows.Rd | 6 man/libreoffice_exec.Rd | 22 +- man/node_exec.Rd | 22 +- man/npm_exec.Rd | 22 +- man/pandoc_exec.Rd |only man/pip_exec.Rd | 22 +- man/powerpoint_exec.Rd | 22 +- man/python_exec.Rd | 22 +- man/word_exec.Rd | 22 +- tests |only 32 files changed, 811 insertions(+), 380 deletions(-)
Title: Immune Oncology Biological Research
Description: Provides six modules for tumor microenvironment (TME)
analysis based on multi-omics data. These modules cover data
preprocessing, TME estimation, TME infiltrating patterns, cellular
interactions, genome and TME interaction, and visualization for TME
relevant features, as well as modelling based on key features. It
integrates multiple microenvironmental analysis algorithms and
signature estimation methods, simplifying the analysis and downstream
visualization of the TME. In addition to providing a quick and easy
way to construct gene signatures from single-cell RNA-seq data, it
also provides a way to construct a reference matrix for TME
deconvolution from single-cell RNA-seq data. The analysis pipeline and
feature visualization are user-friendly and provide a comprehensive
description of the complex TME, offering insights into tumour-immune
interactions (Zeng D, et al. (2024)
<doi:10.1016/j.crmeth.2024.100910>. Fang Y, et al. (2025)
<doi:10.1002/mdr2.70001>).
Author: Dongqiang Zeng [aut],
Yiran Fang [aut],
Shixiang Wang [aut, cre] ,
Qingcong Luo [aut],
Hongqian Qian [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between IOBR versions 2.2.1 dated 2026-05-15 and 2.2.2 dated 2026-05-25
DESCRIPTION | 25 +++++++++++++------------ MD5 | 16 ++++++++-------- NEWS.md | 11 +++++++++++ R/download_data.R | 36 ++++++++++++++++++++++++++++-------- R/eset_distribution.R | 11 +++++++---- README.md | 11 ++++++++--- inst/doc/IOBR-user-manual.html | 4 ++-- man/add_iobr_mirror.Rd | 4 +++- man/eset_distribution.Rd | 11 +++++++---- 9 files changed, 87 insertions(+), 42 deletions(-)
Title: Mixture and Hidden Markov Models with R: Datasets and Example
Code
Description: Datasets and code examples that accompany our book Visser & Speekenbrink (2021), "Mixture and Hidden Markov Models with R", <https://depmix.github.io/hmmr/>.
Author: Ingmar Visser [aut, cre],
Maarten Speekenbrink [aut]
Maintainer: Ingmar Visser <i.visser@uva.nl>
Diff between hmmr versions 1.0-0.1 dated 2025-03-08 and 1.0-1 dated 2026-05-25
DESCRIPTION | 14 ++++----- MD5 | 56 +++++++++++++++++++-------------------- NAMESPACE | 2 + NEWS | 5 +++ data/IGT.rda |binary data/MAR_simulation_results.rda |binary data/MNAR_simulation_results.rda |binary data/SEsamples.rda |binary data/WPT.rda |binary data/balance8.rda |binary data/balance8pars.rda |binary data/confint.rda |binary data/conservation.rda |binary data/dccs.rda |binary data/dccs_boot_LR.rda |binary data/dccslong.rda |binary data/disc42.rda |binary data/discrimination.rda |binary data/perth.rda |binary data/simplehmm.rda |binary data/speed1.rda |binary data/speed_boot_LR.rda |binary data/speed_boot_LR_extra.rda |binary data/speed_boot_par.rda |binary inst/CITATION | 20 ++++++------- man/MAR_simulation_results.Rd | 4 +- man/MNAR_simulation_results.Rd | 4 +- man/speed_boot_LR.Rd | 6 ++-- man/speed_boot_LR_extra.Rd | 6 ++-- 29 files changed, 62 insertions(+), 55 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau
APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's
geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping
and spatial analysis.
Author: Kyle Walker [aut, cre],
Matt Herman [aut],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tidycensus versions 1.8.0 dated 2026-05-19 and 1.8.1 dated 2026-05-25
DESCRIPTION | 12 +- MD5 | 37 ++++----- NAMESPACE | 3 NEWS.md | 1 R/acs.R | 17 +--- R/census.R | 20 ++-- R/estimates.R | 41 +++++++--- R/helpers.R | 162 +++++++++++++++++++--------------------- R/load_data.R | 59 +++++++++----- R/search_variables.R | 74 ++---------------- R/tidycensus-package.R | 5 - R/validate_call.R | 4 man/census_api_key.Rd | 2 man/get_acs.Rd | 11 -- man/get_decennial.Rd | 13 +-- man/get_estimates.Rd | 5 - man/load_variables.Rd | 6 - tests/testthat/test-api-key.R | 132 +++++++++++++++++++++----------- tests/testthat/test-estimates.R |only tests/testthat/test-helpers.R | 21 ++++- 20 files changed, 330 insertions(+), 295 deletions(-)
Title: Efficient and Precise Single-Cell Reference Atlas Mapping
Description: Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <https://www.nature.com/articles/s41467-021-25957-x>.
Author: Joyce Kang [aut, cre] ,
Ilya Korsunsky [aut] ,
Soumya Raychaudhuri [aut]
Maintainer: Joyce Kang <joyce.b.kang@gmail.com>
Diff between symphony versions 0.1.2 dated 2025-10-30 and 0.1.3 dated 2026-05-25
DESCRIPTION | 10 - MD5 | 20 +- NEWS.md | 3 R/buildReference.R | 15 - R/buildReferenceFromHarmonyObj.R | 12 - build/vignette.rds |binary inst/doc/quickstart_tutorial.R | 9 - inst/doc/quickstart_tutorial.Rmd | 9 - inst/doc/quickstart_tutorial.html | 322 +++++++++++++++++++------------------- man/symphony-package.Rd | 2 vignettes/quickstart_tutorial.Rmd | 9 - 11 files changed, 209 insertions(+), 202 deletions(-)
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Olivier Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.26 dated 2026-04-17 and 1.27 dated 2026-05-25
DESCRIPTION | 12 MD5 | 158 NEWS.md | 14 R/RcppExports.R | 12 R/asserts.R | 26 R/class-workbook-wrappers.R | 2 R/class-workbook.R | 262 - R/class-worksheet.R | 3 R/helper-functions.R | 4 R/utils.R | 11 R/wb_load.R | 56 R/write.R | 38 build/vignette.rds |binary inst/doc/conditional-formatting.html | 104 inst/doc/openxlsx2_charts_manual.R | 99 inst/doc/openxlsx2_charts_manual.Rmd | 117 inst/doc/openxlsx2_charts_manual.html | 182 inst/doc/openxlsx2_style_manual.html | 8 man/base_font-wb.Rd | 38 man/col_widths-wb.Rd | 54 man/create_border.Rd | 16 man/create_cell_style.Rd | 16 man/create_colors_xml.Rd | 16 man/create_dxfs_style.Rd | 16 man/create_fill.Rd | 16 man/create_font.Rd | 16 man/create_numfmt.Rd | 16 man/create_tablestyle.Rd | 16 man/creators-wb.Rd | 32 man/filter-wb.Rd | 22 man/grouping-wb.Rd | 76 man/named_region-wb.Rd | 22 man/openxlsx2-package.Rd | 1 man/row_heights-wb.Rd | 54 man/wbWorkbook.Rd | 5398 ++++++++++++-------------- man/wb_add_border.Rd | 12 man/wb_add_cell_style.Rd | 12 man/wb_add_chartsheet.Rd | 30 man/wb_add_conditional_formatting.Rd | 20 man/wb_add_data.Rd | 50 man/wb_add_data_table.Rd | 50 man/wb_add_dxfs_style.Rd | 4 man/wb_add_fill.Rd | 12 man/wb_add_font.Rd | 12 man/wb_add_formula.Rd | 50 man/wb_add_hyperlink.Rd | 50 man/wb_add_named_style.Rd | 12 man/wb_add_numfmt.Rd | 12 man/wb_add_pivot_table.Rd | 52 man/wb_add_plot.Rd | 2 man/wb_add_slicer.Rd | 52 man/wb_add_style.Rd | 4 man/wb_add_thread.Rd | 20 man/wb_add_worksheet.Rd | 30 man/wb_base_colors.Rd | 38 man/wb_cell_style.Rd | 14 man/wb_clone_worksheet.Rd | 30 man/wb_copy_cells.Rd | 32 man/wb_freeze_pane.Rd | 50 man/wb_merge_cells.Rd | 50 man/wb_save.Rd | 30 man/wb_set_last_modified_by.Rd | 30 man/wb_workbook.Rd | 30 man/write_xlsx.Rd | 2 src/RcppExports.cpp | 33 src/date.cpp | 2 src/helper_functions.cpp | 138 src/load_workbook.cpp | 134 src/openxlsx2.h | 17 src/openxlsx2_types.h | 31 src/write_file.cpp | 14 tests/testthat/test-class-workbook-wrappers.R | 22 tests/testthat/test-class-workbook.R | 133 tests/testthat/test-date_time_conversion.R | 1 tests/testthat/test-formulas.R | 4 tests/testthat/test-save.R | 1 tests/testthat/test-utils.R | 7 tests/testthat/test-wb_functions.R | 4 tests/testthat/test-write.R | 8 vignettes/openxlsx2_charts_manual.Rmd | 117 80 files changed, 4221 insertions(+), 4170 deletions(-)
Title: General utilities, workspace organization, code and doc editing,
live package maintenance, etc
Description: Hierarchical workspace tree, code editing and backup, easy package prep, editing of packages while loaded, per-object lazy-loading, easy documentation, macro functions, and miscellaneous utilities. Needed by various packages including debug, offarray, and kinference.
Author: Mark V. Bravington [aut, cre]
Maintainer: Mark V. Bravington <markb2@summerinsouth.net>
Diff between mvbutils versions 2.8.232 dated 2018-12-12 and 2.12.120 dated 2026-05-25
mvbutils-2.12.120/mvbutils/.Rinstignore |only mvbutils-2.12.120/mvbutils/DESCRIPTION | 25 mvbutils-2.12.120/mvbutils/INDEX | 148 mvbutils-2.12.120/mvbutils/MD5 | 119 mvbutils-2.12.120/mvbutils/NAMESPACE | 74 mvbutils-2.12.120/mvbutils/NEWS |only mvbutils-2.12.120/mvbutils/R/mvbutils.R |13130 ++++++++-- mvbutils-2.12.120/mvbutils/R/sysdata.rda |binary mvbutils-2.12.120/mvbutils/inst/demostuff/original.dochelp.rrr | 1 mvbutils-2.12.120/mvbutils/inst/demostuff/sample.fun.rrr | 13 mvbutils-2.12.120/mvbutils/man/00mvbutils-package.Rd | 19 mvbutils-2.12.120/mvbutils/man/A2D.Rd |only mvbutils-2.12.120/mvbutils/man/Clink_packages.Rd |only mvbutils-2.12.120/mvbutils/man/D2A.Rd |only mvbutils-2.12.120/mvbutils/man/DYN.UNLOAD.Rd |only mvbutils-2.12.120/mvbutils/man/RENEWS.Rd |only mvbutils-2.12.120/mvbutils/man/REPORTO.Rd |only mvbutils-2.12.120/mvbutils/man/Save.Rd | 8 mvbutils-2.12.120/mvbutils/man/add.flatdoc.to.Rd | 5 mvbutils-2.12.120/mvbutils/man/autodate.Rd |only mvbutils-2.12.120/mvbutils/man/bugfix_Rd2roxygen.Rd |only mvbutils-2.12.120/mvbutils/man/cdfind.Rd | 2 mvbutils-2.12.120/mvbutils/man/compare_spacks.Rd |only mvbutils-2.12.120/mvbutils/man/dedoc_namespace.Rd |only mvbutils-2.12.120/mvbutils/man/do.in.envir.Rd | 12 mvbutils-2.12.120/mvbutils/man/doc2Rd.Rd | 21 mvbutils-2.12.120/mvbutils/man/docattr.Rd |only mvbutils-2.12.120/mvbutils/man/dont.lock.me.Rd | 12 mvbutils-2.12.120/mvbutils/man/dont.lockBindings.Rd | 14 mvbutils-2.12.120/mvbutils/man/find.documented.Rd | 3 mvbutils-2.12.120/mvbutils/man/fix.order.Rd | 16 mvbutils-2.12.120/mvbutils/man/fixr.Rd | 37 mvbutils-2.12.120/mvbutils/man/foodweb.Rd | 40 mvbutils-2.12.120/mvbutils/man/generic.dll.loader.Rd | 29 mvbutils-2.12.120/mvbutils/man/get.backup.Rd | 64 mvbutils-2.12.120/mvbutils/man/get_ncores_CRANal.Rd |only mvbutils-2.12.120/mvbutils/man/gitup_pkg.Rd |only mvbutils-2.12.120/mvbutils/man/hack.Rd | 6 mvbutils-2.12.120/mvbutils/man/help2flatdoc.Rd | 2 mvbutils-2.12.120/mvbutils/man/install.pkg.Rd | 53 mvbutils-2.12.120/mvbutils/man/local.return.Rd | 4 mvbutils-2.12.120/mvbutils/man/localfuncs.Rd | 3 mvbutils-2.12.120/mvbutils/man/lsize.Rd | 31 mvbutils-2.12.120/mvbutils/man/maintain.packages.Rd | 16 mvbutils-2.12.120/mvbutils/man/make.NAMESPACE.Rd | 6 mvbutils-2.12.120/mvbutils/man/make.arguments.section.Rd |only mvbutils-2.12.120/mvbutils/man/make_CRANtidote.Rd |only mvbutils-2.12.120/mvbutils/man/make_dull.Rd | 26 mvbutils-2.12.120/mvbutils/man/mdeparse.Rd |only mvbutils-2.12.120/mvbutils/man/mlazy.Rd | 22 mvbutils-2.12.120/mvbutils/man/move.Rd | 14 mvbutils-2.12.120/mvbutils/man/multimatch.Rd |only mvbutils-2.12.120/mvbutils/man/mvb.session.env.Rd |only mvbutils-2.12.120/mvbutils/man/mvboption.Rd |only mvbutils-2.12.120/mvbutils/man/mvbutils.operators.Rd | 49 mvbutils-2.12.120/mvbutils/man/mvbutils.packaging.tools.Rd | 14 mvbutils-2.12.120/mvbutils/man/mvbutils.utils.Rd | 193 mvbutils-2.12.120/mvbutils/man/numvbderiv_parallel.Rd |only mvbutils-2.12.120/mvbutils/man/pre.install.Rd | 124 mvbutils-2.12.120/mvbutils/man/print.Rd | 9 mvbutils-2.12.120/mvbutils/man/rm.pkg.Rd | 8 mvbutils-2.12.120/mvbutils/man/screen_masked_imports.Rd |only mvbutils-2.12.120/mvbutils/man/search.for.regexpr.Rd | 44 mvbutils-2.12.120/mvbutils/man/search.task.trees.Rd | 11 mvbutils-2.12.120/mvbutils/man/set.finalizer.Rd | 28 mvbutils-2.12.120/mvbutils/man/set.presave.hook.mvb.Rd | 7 mvbutils-2.12.120/mvbutils/man/source.mvb.Rd | 2 mvbutils-2.12.120/mvbutils/man/task.home.Rd | 6 mvbutils-2.12.120/mvbutils/man/unpackage.Rd | 15 mvbutils-2.12.120/mvbutils/man/vignette.pkg.Rd |only mvbutils-2.12.120/mvbutils/man/visify.Rd |only mvbutils-2.12.120/mvbutils/man/write.sourceable.function.Rd | 24 mvbutils-2.12.120/mvbutils/man/write_sourceable_function.Rd |only mvbutils-2.8.232/mvbutils/man/flatdoc.Rd |only mvbutils-2.8.232/mvbutils/man/make.usage.section.Rd |only 75 files changed, 11799 insertions(+), 2710 deletions(-)
Title: Minimal LLM Chat Interface
Description: A minimal-dependency client for Large Language Model chat APIs.
Supports 'OpenAI' <https://openai.com/>, 'Anthropic' 'Claude'
<https://claude.com/>, 'Moonshot' 'Kimi' <https://www.moonshot.ai/>,
'Ollama' <https://ollama.com/>, and other 'OpenAI'-compatible
endpoints. Includes an agent loop with tool use and a 'Model Context
Protocol' client <https://modelcontextprotocol.io/>. API design is
derived from the 'ellmer' package, reimplemented with only base R,
'curl', and 'jsonlite'.
Author: Troy Hernandez [aut, cre] ,
cornball.ai [cph],
ellmer team [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between llm.api versions 0.1.3 dated 2026-05-15 and 0.1.4 dated 2026-05-25
DESCRIPTION | 7 MD5 | 50 +++--- NAMESPACE | 2 NEWS.md | 131 ++++++++++++++++ R/agent.R | 221 ++++++++++++++++++++++------ R/chat.R | 122 +++++++++++++-- R/cost.R | 213 ++++++++++++++++++++++++-- R/providers.R | 18 +- R/session.R | 15 + R/sysdata.rda |binary README.md | 6 inst/tinytest/test_agent_extensions.R |only inst/tinytest/test_agent_history_callback.R |only inst/tinytest/test_cost.R | 156 +++++++++++++++++++ inst/tinytest/test_providers.R | 12 - man/agent.Rd | 29 +++ man/chat.Rd | 15 + man/chat_claude.Rd | 2 man/chat_ollama.Rd | 4 man/chat_openai.Rd | 6 man/chat_session.Rd | 2 man/chat_session_anthropic.Rd | 5 man/chat_session_ollama.Rd | 4 man/chat_session_openai.Rd | 4 man/history_tool_calls.Rd | 3 man/prices_snapshot_date.Rd | 31 +++ man/prices_snapshot_stale.Rd |only man/usage_cost.Rd |only 28 files changed, 904 insertions(+), 154 deletions(-)
Title: 'GGML' Tensor Operations for Machine Learning
Description: Provides 'R' bindings to the 'GGML' tensor library for machine
learning, optimized for 'Vulkan' GPU acceleration with a transparent CPU
fallback. The package features a 'Keras'-like sequential API and a
'PyTorch'-style 'autograd' engine for building, training, and deploying
neural networks. Key capabilities include high-performance 5D tensor
operations, 'f16' precision, and efficient quantization. It supports
native 'ONNX' model import (50+ operators) and 'GGUF' weight loading
from the 'llama.cpp' and 'Hugging Face' ecosystems. Designed for
zero-overhead inference via dedicated weight buffering, it integrates
seamlessly as a 'parsnip' engine for 'tidymodels' and provides
first-class learners for the 'mlr3' framework.
See <https://github.com/ggml-org/ggml> for more information about the
underlying library.
Author: Yuri Baramykov [aut, cre] ,
Georgi Gerganov [ctb, cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
Mozilla Foundation [ctb, cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between ggmlR versions 0.7.6 dated 2026-04-22 and 0.7.7 dated 2026-05-25
ggmlR-0.7.6/ggmlR/inst/include |only ggmlR-0.7.6/ggmlR/tests/testthat/Rplots.pdf |only ggmlR-0.7.7/ggmlR/DESCRIPTION | 12 ggmlR-0.7.7/ggmlR/MD5 | 507 +++---- ggmlR-0.7.7/ggmlR/NAMESPACE | 16 ggmlR-0.7.7/ggmlR/NEWS.md | 9 ggmlR-0.7.7/ggmlR/R/autograd.R | 3 ggmlR-0.7.7/ggmlR/R/backend.R | 76 + ggmlR-0.7.7/ggmlR/R/gguf.R | 1 ggmlR-0.7.7/ggmlR/R/nn_functional.R | 2 ggmlR-0.7.7/ggmlR/R/nn_layers.R | 18 ggmlR-0.7.7/ggmlR/R/operations.R | 181 ++ ggmlR-0.7.7/ggmlR/R/quants.R | 58 ggmlR-0.7.7/ggmlR/README.md | 43 ggmlR-0.7.7/ggmlR/cleanup | 4 ggmlR-0.7.7/ggmlR/configure | 17 ggmlR-0.7.7/ggmlR/configure.win | 8 ggmlR-0.7.7/ggmlR/inst/doc/autograd-engine.Rmd | 1 ggmlR-0.7.7/ggmlR/inst/doc/autograd-engine.html | 14 ggmlR-0.7.7/ggmlR/inst/doc/gpu-vulkan.R | 4 ggmlR-0.7.7/ggmlR/inst/doc/gpu-vulkan.Rmd | 4 ggmlR-0.7.7/ggmlR/inst/doc/gpu-vulkan.html | 14 ggmlR-0.7.7/ggmlR/inst/doc/keras-like-api.html | 2 ggmlR-0.7.7/ggmlR/inst/doc/mlr3-integration.html | 4 ggmlR-0.7.7/ggmlR/inst/examples/bench_conv2d_paths.R |only ggmlR-0.7.7/ggmlR/inst/examples/benchmark_coopmat.R |only ggmlR-0.7.7/ggmlR/inst/examples/check_new_bindings.R |only ggmlR-0.7.7/ggmlR/inst/examples/coopmat_configs.R |only ggmlR-0.7.7/ggmlR/inst/examples/gpu_stress_test.R |only ggmlR-0.7.7/ggmlR/inst/examples/test_onnx_repeated.R |only ggmlR-0.7.7/ggmlR/inst/examples/vulkan_caps.R | 62 ggmlR-0.7.7/ggmlR/man/dequantize_row_iq2_xxs.Rd | 4 ggmlR-0.7.7/ggmlR/man/dequantize_row_mxfp4.Rd | 4 ggmlR-0.7.7/ggmlR/man/dequantize_row_nvfp4.Rd |only ggmlR-0.7.7/ggmlR/man/dequantize_row_q1_0.Rd |only ggmlR-0.7.7/ggmlR/man/dequantize_row_q2_K.Rd | 4 ggmlR-0.7.7/ggmlR/man/dequantize_row_q4_0.Rd | 4 ggmlR-0.7.7/ggmlR/man/dequantize_row_tq1_0.Rd | 4 ggmlR-0.7.7/ggmlR/man/ggmlR-package.Rd | 2 ggmlR-0.7.7/ggmlR/man/ggml_add_rel_pos.Rd |only ggmlR-0.7.7/ggmlR/man/ggml_arange.Rd |only ggmlR-0.7.7/ggmlR/man/ggml_backend_buffer_clear.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_buffer_get_usage.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_buffer_is_host.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_buffer_is_multi_buffer.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_buffer_reset.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_buffer_set_usage.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_buffer_usage_any.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_buffer_usage_compute.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_buffer_usage_weights.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_by_name.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_by_type.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_count.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_description.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_get.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_get_props.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_init.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_memory.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_name.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_offload_op.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_supports_buft.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_supports_op.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_dev_type.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_device_register.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_device_type_accel.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_device_type_cpu.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_device_type_gpu.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_device_type_igpu.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_event_free.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_event_new.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_event_record.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_event_synchronize.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_event_wait.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_get_device.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_graph_compute_async.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_graph_plan_compute.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_graph_plan_create.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_graph_plan_free.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_init_best.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_init_by_name.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_init_by_type.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_load.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_load_all.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_meta_device.Rd |only ggmlR-0.7.7/ggmlR/man/ggml_backend_multi_buffer_alloc_buffer.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_multi_buffer_set_usage.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_reg_by_name.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_reg_count.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_reg_dev_count.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_reg_dev_get.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_reg_get.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_reg_name.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_register.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_synchronize.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_tensor_copy_async.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_tensor_get_async.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_tensor_set_async.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_backend_unload.Rd | 1 ggmlR-0.7.7/ggmlR/man/ggml_conv_1d_dw.Rd |only ggmlR-0.7.7/ggmlR/man/ggml_conv_2d_dw.Rd |only ggmlR-0.7.7/ggmlR/man/ggml_conv_2d_dw_direct.Rd |only ggmlR-0.7.7/ggmlR/man/ggml_conv_transpose_2d_p0.Rd |only ggmlR-0.7.7/ggmlR/man/ggml_get_rel_pos.Rd |only ggmlR-0.7.7/ggmlR/man/ggml_pad_reflect_1d.Rd |only ggmlR-0.7.7/ggmlR/man/ggml_quant_block_info.Rd | 4 ggmlR-0.7.7/ggmlR/man/ggml_roll.Rd |only ggmlR-0.7.7/ggmlR/man/ggml_win_part.Rd |only ggmlR-0.7.7/ggmlR/man/ggml_win_unpart.Rd |only ggmlR-0.7.7/ggmlR/man/gguf_free.Rd | 3 ggmlR-0.7.7/ggmlR/man/iq2xs_free_impl.Rd | 4 ggmlR-0.7.7/ggmlR/man/iq2xs_init_impl.Rd | 4 ggmlR-0.7.7/ggmlR/man/iq3xs_free_impl.Rd | 4 ggmlR-0.7.7/ggmlR/man/iq3xs_init_impl.Rd | 4 ggmlR-0.7.7/ggmlR/man/is_ag_tensor.Rd | 6 ggmlR-0.7.7/ggmlR/man/nn_apply_activation.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_batch_norm.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_conv_1d.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_conv_2d.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_dense.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_dropout.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_embedding.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_flatten.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_functional_node.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_global_average_pooling_2d.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_global_max_pooling_2d.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_gru.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_layer.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_lstm.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_build_max_pooling_2d.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_functional_output_shape.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_init_glorot_uniform.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_init_he_uniform.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_init_recurrent_uniform.Rd | 3 ggmlR-0.7.7/ggmlR/man/nn_init_zeros.Rd | 3 ggmlR-0.7.7/ggmlR/man/print.ag_tensor.Rd | 3 ggmlR-0.7.7/ggmlR/man/quantize_iq2_xxs.Rd | 4 ggmlR-0.7.7/ggmlR/man/quantize_mxfp4.Rd | 4 ggmlR-0.7.7/ggmlR/man/quantize_nvfp4.Rd |only ggmlR-0.7.7/ggmlR/man/quantize_q1_0.Rd |only ggmlR-0.7.7/ggmlR/man/quantize_q2_K.Rd | 4 ggmlR-0.7.7/ggmlR/man/quantize_q4_0.Rd | 4 ggmlR-0.7.7/ggmlR/man/quantize_row_iq3_xxs_ref.Rd | 4 ggmlR-0.7.7/ggmlR/man/quantize_row_mxfp4_ref.Rd | 4 ggmlR-0.7.7/ggmlR/man/quantize_row_q2_K_ref.Rd | 4 ggmlR-0.7.7/ggmlR/man/quantize_row_q4_0_ref.Rd | 4 ggmlR-0.7.7/ggmlR/man/quantize_row_tq1_0_ref.Rd | 4 ggmlR-0.7.7/ggmlR/man/quantize_tq1_0.Rd | 4 ggmlR-0.7.7/ggmlR/src/Makevars.in | 6 ggmlR-0.7.7/ggmlR/src/Makevars.win.in | 4 ggmlR-0.7.7/ggmlR/src/ggml-alloc.c | 17 ggmlR-0.7.7/ggmlR/src/ggml-backend-impl.h | 26 ggmlR-0.7.7/ggmlR/src/ggml-backend-meta.cpp |only ggmlR-0.7.7/ggmlR/src/ggml-backend-reg.cpp | 26 ggmlR-0.7.7/ggmlR/src/ggml-backend.cpp | 180 ++ ggmlR-0.7.7/ggmlR/src/ggml-backend.h | 87 + ggmlR-0.7.7/ggmlR/src/ggml-common.h | 30 ggmlR-0.7.7/ggmlR/src/ggml-context.c | 58 ggmlR-0.7.7/ggmlR/src/ggml-core.c | 51 ggmlR-0.7.7/ggmlR/src/ggml-cpu.h | 5 ggmlR-0.7.7/ggmlR/src/ggml-cpu/arch-fallback.h | 2 ggmlR-0.7.7/ggmlR/src/ggml-cpu/arch/x86/quants.c | 9 ggmlR-0.7.7/ggmlR/src/ggml-cpu/binary-ops.cpp | 8 ggmlR-0.7.7/ggmlR/src/ggml-cpu/common.h | 8 ggmlR-0.7.7/ggmlR/src/ggml-cpu/ggml-cpu-backend.c | 45 ggmlR-0.7.7/ggmlR/src/ggml-cpu/ggml-cpu-impl.h | 3 ggmlR-0.7.7/ggmlR/src/ggml-cpu/ggml-cpu.cpp | 17 ggmlR-0.7.7/ggmlR/src/ggml-cpu/ops-elemwise.cpp | 6 ggmlR-0.7.7/ggmlR/src/ggml-cpu/ops-misc.cpp | 90 + ggmlR-0.7.7/ggmlR/src/ggml-cpu/ops-recurrent.cpp | 190 ++ ggmlR-0.7.7/ggmlR/src/ggml-cpu/ops-ssm.cpp | 512 ++++++- ggmlR-0.7.7/ggmlR/src/ggml-cpu/ops-tensor.cpp | 8 ggmlR-0.7.7/ggmlR/src/ggml-cpu/ops.h | 2 ggmlR-0.7.7/ggmlR/src/ggml-cpu/quants.c | 95 + ggmlR-0.7.7/ggmlR/src/ggml-cpu/quants.h | 6 ggmlR-0.7.7/ggmlR/src/ggml-cpu/simd-gemm.h |only ggmlR-0.7.7/ggmlR/src/ggml-cpu/unary-ops.cpp | 2 ggmlR-0.7.7/ggmlR/src/ggml-graph.c | 77 - ggmlR-0.7.7/ggmlR/src/ggml-impl.h | 71 ggmlR-0.7.7/ggmlR/src/ggml-misc.c | 49 ggmlR-0.7.7/ggmlR/src/ggml-ops-builders.c | 81 - ggmlR-0.7.7/ggmlR/src/ggml-opt.cpp | 1 ggmlR-0.7.7/ggmlR/src/ggml-opt.h | 2 ggmlR-0.7.7/ggmlR/src/ggml-quants-iq.c | 29 ggmlR-0.7.7/ggmlR/src/ggml-quants-new.c |only ggmlR-0.7.7/ggmlR/src/ggml-quants-new.h |only ggmlR-0.7.7/ggmlR/src/ggml-quants-validate.c | 10 ggmlR-0.7.7/ggmlR/src/ggml-quants.h | 8 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/ggml-vulkan-attn.cpp | 258 ++- ggmlR-0.7.7/ggmlR/src/ggml-vulkan/ggml-vulkan-device.cpp | 441 +++++- ggmlR-0.7.7/ggmlR/src/ggml-vulkan/ggml-vulkan-elemwise.cpp | 132 + ggmlR-0.7.7/ggmlR/src/ggml-vulkan/ggml-vulkan-graph.cpp | 375 ++++- ggmlR-0.7.7/ggmlR/src/ggml-vulkan/ggml-vulkan-matmul.cpp | 309 +++- ggmlR-0.7.7/ggmlR/src/ggml-vulkan/ggml-vulkan-misc.cpp | 91 - ggmlR-0.7.7/ggmlR/src/ggml-vulkan/ggml-vulkan-shaders.cpp | 279 +++ ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/acc.comp | 9 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/copy_from_quant.comp | 2 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/copy_to_quant.comp | 25 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/cumsum_multipass1.comp |only ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/cumsum_multipass2.comp |only ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/dequant_funcs.glsl | 24 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/dequant_funcs_cm2.glsl | 36 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/dequant_nvfp4.comp |only ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/dequant_q1_0.comp |only ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/elu.comp | 9 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/flash_attn.comp | 720 +++++++--- ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/flash_attn_base.glsl | 239 ++- ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/flash_attn_cm1.comp | 590 +++++--- ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/flash_attn_cm2.comp | 250 ++- ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/flash_attn_mask_opt.comp |only ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/flash_attn_mmq_funcs.glsl |only ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/flash_attn_split_k_reduce.comp | 17 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/gated_delta_net.comp |only ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/glu_head.glsl | 10 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/glu_main.glsl | 22 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/im2col.comp | 100 - ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/im2col_v2.comp |only ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/l2_norm.comp | 21 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mat_vec_base.glsl | 5 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mat_vec_iface.glsl | 12 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mat_vec_q2_k.comp | 2 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mat_vec_q4_k.comp | 2 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mat_vec_q5_k.comp | 2 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mat_vecq.comp | 13 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mat_vecq_funcs.glsl | 148 +- ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mm.comp | 38 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mm_cm2.comp | 16 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mm_funcs.glsl | 352 ++-- ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mm_id_funcs.glsl | 4 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mmq.comp | 16 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mmq_funcs.glsl | 24 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/mul_mmq_shmem_types.glsl | 22 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/quantize_q8_1.comp | 16 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/rms_norm.comp | 5 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/rope_funcs.glsl | 99 - ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/rope_multi.comp | 11 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/rope_neox.comp | 11 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/rope_norm.comp | 11 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/rope_params.glsl | 14 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/rope_vision.comp | 11 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/sgn.comp |only ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/ssm_conv.comp | 26 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/ssm_scan.comp | 108 - ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/topk_moe.comp | 47 ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/types.glsl | 354 ++++ ggmlR-0.7.7/ggmlR/src/ggml-vulkan/vulkan-shaders/vulkan-shaders-gen.cpp | 155 +- ggmlR-0.7.7/ggmlR/src/ggml.h | 74 - ggmlR-0.7.7/ggmlR/src/gguf.cpp | 163 +- ggmlR-0.7.7/ggmlR/src/gguf.h | 2 ggmlR-0.7.7/ggmlR/src/r_interface.c | 43 ggmlR-0.7.7/ggmlR/src/r_interface_backend.c | 218 +++ ggmlR-0.7.7/ggmlR/src/r_interface_graph.c | 223 +++ ggmlR-0.7.7/ggmlR/src/r_interface_quants.c | 12 ggmlR-0.7.7/ggmlR/tests/testthat.R | 4 ggmlR-0.7.7/ggmlR/tests/testthat/test-backend-extended.R | 54 ggmlR-0.7.7/ggmlR/tests/testthat/test-conv-transpose-numeric.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-conv2d-dw-numeric.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-conv2d-numeric.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-flash-attn-quants.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-functional-shared-layers.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-getrows-offload-vulkan.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-ggml.R | 2 ggmlR-0.7.7/ggmlR/tests/testthat/test-meta-backend.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-new-ops-numeric.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-print-methods.R | 3 ggmlR-0.7.7/ggmlR/tests/testthat/test-q4k-matmul-vulkan.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-quantize-fns.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-quants-iq-degenerate.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-quants-missing.R | 97 + ggmlR-0.7.7/ggmlR/tests/testthat/test-rope-multi.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-upscale.R |only ggmlR-0.7.7/ggmlR/tests/testthat/test-version.R | 2 ggmlR-0.7.7/ggmlR/vignettes/autograd-engine.Rmd | 1 ggmlR-0.7.7/ggmlR/vignettes/gpu-vulkan.Rmd | 4 273 files changed, 7587 insertions(+), 1889 deletions(-)
Title: Models for Skewed Count Distributions Relevant to Networks
Description: Likelihood-based inference for skewed count distributions, typically of degrees used in network modeling. "degreenet" is a part of the "statnet" suite of packages for network analysis. See Jones and Handcock <doi:10.1098/rspb.2003.2369>.
Author: Mark S. Handcock [aut, cre, cph]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between degreenet versions 1.3-6 dated 2024-09-25 and 1.3-7 dated 2026-05-25
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- R/reedmolloy.R | 6 +++--- R/ryule.R | 6 +++--- build/partial.rdb |binary 5 files changed, 16 insertions(+), 16 deletions(-)
Title: Congruence Class Models for Networks
Description: Provides an implementation of Congruence Class Models (CCMs) for
generating networks. For additional details on CCMs see Goyal, Blitzstein,
and De Gruttola (2014) <doi:10.1017/nws.2014.2> and
Goyal, De Gruttola, Martin, Rennert, and Onnela <doi:10.48550/arXiv.2603.02467>.
'ccmnet' facilitates sampling networks based on specific topological properties
and attribute mixing patterns using a Markov Chain Monte Carlo framework.
The implementation builds upon code from the 'ergm' package;
see Handcock, Hunter, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i01>.
Author: Ravi Goyal [aut, cre],
Statnet Development Team [ctb, cph]
Maintainer: Ravi Goyal <ravi.j.goyal@gmail.com>
Diff between CCMnet versions 1.0.0 dated 2026-03-02 and 1.1.0 dated 2026-05-25
CCMnet-1.0.0/CCMnet/man/sample_theoretical.Rd |only CCMnet-1.0.0/CCMnet/tests |only CCMnet-1.1.0/CCMnet/DESCRIPTION | 19 CCMnet-1.1.0/CCMnet/MD5 | 111 - CCMnet-1.1.0/CCMnet/NAMESPACE | 4 CCMnet-1.1.0/CCMnet/R/CCMnet_Sample.R | 111 - CCMnet-1.1.0/CCMnet/R/CCMnet_Sample_methods.R | 54 CCMnet-1.1.0/CCMnet/R/CCMnet_constr.R | 9 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_bi.R | 2 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni.R | 44 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_initalstat.R | 36 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_initalstat_degdist.R | 6 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_initalstat_degmxing.R | 2 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_initalstat_degmxing_clustering.R | 2 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_initalstat_edges.R | 2 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_initalstat_mixing.R | 20 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_initalstat_mixing_degdist.R | 2 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_obs_stats.R | 28 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_verifyinput.R | 99 - CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_verifyinput_degdist.R | 63 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_verifyinput_degmxing.R | 58 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_verifyinput_degmxing_clustering.R | 74 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_verifyinput_edges.R | 80 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_verifyinput_mixing.R | 32 CCMnet-1.1.0/CCMnet/R/CCMnet_constr_uni_verifyinput_mixing_degdist.R | 140 - CCMnet-1.1.0/CCMnet/R/CCMnet_prob_distr_config.R |only CCMnet-1.1.0/CCMnet/R/CCMnet_sample_ccm_validate_input.R |only CCMnet-1.1.0/CCMnet/R/CCMnet_theoretical_check.R | 10 CCMnet-1.1.0/CCMnet/R/CCMnet_theoretical_check_degmix.R | 63 CCMnet-1.1.0/CCMnet/R/CCMnet_theoretical_check_degmixclustering.R | 84 CCMnet-1.1.0/CCMnet/R/CCMnet_theoretical_check_degree.R | 35 CCMnet-1.1.0/CCMnet/R/CCMnet_theoretical_check_degree_mixing.R | 62 CCMnet-1.1.0/CCMnet/R/CCMnet_theoretical_check_density.R | 27 CCMnet-1.1.0/CCMnet/R/CCMnet_theoretical_check_edges.R | 37 CCMnet-1.1.0/CCMnet/R/CCMnet_theoretical_check_mixing.R | 57 CCMnet-1.1.0/CCMnet/R/CCMnet_utils.R | 54 CCMnet-1.1.0/CCMnet/R/documentation.R |only CCMnet-1.1.0/CCMnet/inst/doc/CCMnet_introduction.R | 30 CCMnet-1.1.0/CCMnet/inst/doc/CCMnet_introduction.Rmd | 30 CCMnet-1.1.0/CCMnet/inst/doc/CCMnet_introduction.html | 46 CCMnet-1.1.0/CCMnet/man/ccm_distributions.Rd |only CCMnet-1.1.0/CCMnet/man/ccm_properties.Rd |only CCMnet-1.1.0/CCMnet/man/plot.ccm_sample.Rd | 10 CCMnet-1.1.0/CCMnet/man/sample_ccm.Rd | 81 CCMnet-1.1.0/CCMnet/man/sample_target_distr.Rd |only CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_degdist.c | 114 - CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_degdist.h | 4 CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_degmixing.c | 388 +++ CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_degmixing.h | 24 CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_edges.c | 52 CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_edges.h | 4 CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_mixing.c | 75 CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_mixing.h | 8 CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_mixing_degdist.c | 196 +- CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_mixing_degdist.h | 14 CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_prob_dist.c |only CCMnet-1.1.0/CCMnet/src/CCMnet_netprop_prob_dist.h |only CCMnet-1.1.0/CCMnet/src/MCMC.c | 18 CCMnet-1.1.0/CCMnet/src/MCMC_prob.c |only CCMnet-1.1.0/CCMnet/src/MCMC_prob.h | 974 ---------- CCMnet-1.1.0/CCMnet/src/MCMC_prob_bi.h | 2 CCMnet-1.1.0/CCMnet/vignettes/CCMnet_introduction.Rmd | 30 62 files changed, 1071 insertions(+), 2456 deletions(-)
Title: Tools for Wikidata and Wikipedia
Description: A set of wrappers intended to check, read and download information from the Wikimedia sources. It is specifically created to work with names of celebrities, in which case their information and statistics can be downloaded. Additionally, it also builds links and snippets to use in combination with the function gallery() in netCoin package.
Author: Modesto Escobar [aut, cph, cre] ,
Angel Zazo [aut],
Carlos Prieto [aut] ,
David Barrios [aut],
Cristina Calvo [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between wikiTools versions 1.2.21 dated 2026-03-16 and 1.2.24 dated 2026-05-25
DESCRIPTION | 8 MD5 | 25 - NAMESPACE | 3 R/wiki_utils.R | 984 +++++++++++++++++++++++++++++++-------------- inst/doc/wiki_utils.R | 282 ++++++------ inst/doc/wiki_utils.Rmd | 159 +++---- inst/doc/wiki_utils.html | 805 ++++++++++++++++++++++++++++-------- man/v_AutoSuggest.Rd | 2 man/v_Extract.Rd | 2 man/v_GetRecord.Rd | 37 + man/v_Search.Rd | 76 +-- man/v_dfVIAF.Rd |only man/w_SearchByAuthority.Rd | 2 vignettes/wiki_utils.Rmd | 159 +++---- 14 files changed, 1661 insertions(+), 883 deletions(-)
Title: Taxonomic Distance and Phylogenetic Lineage Computation
Description: Computes phylogenetic distances between any two taxa using
hierarchical lineage data retrieved from The Taxonomicon
<http://taxonomicon.taxonomy.nl>, a comprehensive curated classification
of all life based on Systema Naturae 2000 (Brands, 1989
<http://taxonomicon.taxonomy.nl>). Given any two taxon names, retrieves their
full lineages, identifies the most recent common ancestor (MRCA),
and computes a dissimilarity index based on lineage depth. Outputs
native dist objects, enabling direct integration with the R statistical
ecosystem for hierarchical clustering, principal coordinate analysis (PCoA),
and multivariate ecological analyses. Supports individual distance queries,
pairwise distance matrices, clade filtering, and lineage utilities.
Author: Rodrigo Fonseca Villa [aut, cre]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>
Diff between taxodist versions 0.3.0 dated 2026-05-05 and 0.4.0 dated 2026-05-25
taxodist-0.3.0/taxodist/tests/testthat/Rplots.pdf |only taxodist-0.4.0/taxodist/DESCRIPTION | 6 taxodist-0.4.0/taxodist/MD5 | 13 - taxodist-0.4.0/taxodist/NEWS.md | 32 ++ taxodist-0.4.0/taxodist/R/distance.R | 88 +++++++ taxodist-0.4.0/taxodist/R/fetch.R | 69 +++++ taxodist-0.4.0/taxodist/R/utils.R | 15 + taxodist-0.4.0/taxodist/tests/testthat/test-distance.R | 213 +++++++++++++++++ 8 files changed, 422 insertions(+), 14 deletions(-)
Title: Modular Monte Carlo Risk Analysis
Description: Framework for building modular Monte Carlo risk analysis models. It extends the capabilities of 'mc2d' to facilitate working with multiple risk pathways, variates and scenarios. It provides tools to organize risk analysis in independent flexible modules, align multivariate mcnodes, automate the creation of mcnodes, visualise model structure, assess convergence, and perform sensitivity analysis. For more details see Ciria (2026) <https://nataliaciria.com/mcmodule/>.
Author: Natalia Ciria [aut, cre, cph] ,
Alberto Allepuz [ths] ,
Giovanna Ciaravino [ths]
Maintainer: Natalia Ciria <nataliaciria@hotmail.com>
Diff between mcmodule versions 1.2.0 dated 2026-03-02 and 1.3.0 dated 2026-05-25
mcmodule-1.2.0/mcmodule/R/mcnode_na_rm.R |only mcmodule-1.3.0/mcmodule/DESCRIPTION | 10 mcmodule-1.3.0/mcmodule/MD5 | 158 mcmodule-1.3.0/mcmodule/NAMESPACE | 9 mcmodule-1.3.0/mcmodule/NEWS.md | 52 mcmodule-1.3.0/mcmodule/R/add_prefix.R | 27 mcmodule-1.3.0/mcmodule/R/create_mcnodes.R | 59 mcmodule-1.3.0/mcmodule/R/dim_match.R | 229 mcmodule-1.3.0/mcmodule/R/eval_module.R | 656 +- mcmodule-1.3.0/mcmodule/R/get_node_list.R | 54 mcmodule-1.3.0/mcmodule/R/imports_exp.R | 16 mcmodule-1.3.0/mcmodule/R/imports_mcmodule.R | 8 mcmodule-1.3.0/mcmodule/R/imports_mctable.R | 2 mcmodule-1.3.0/mcmodule/R/mc_analysis.R | 2495 ++++++---- mcmodule-1.3.0/mcmodule/R/mc_compare.R |only mcmodule-1.3.0/mcmodule/R/mc_filter.R | 77 mcmodule-1.3.0/mcmodule/R/mc_network.R | 17 mcmodule-1.3.0/mcmodule/R/mc_plot.R | 329 + mcmodule-1.3.0/mcmodule/R/mc_summary.R | 15 mcmodule-1.3.0/mcmodule/R/mcmodule_info.R | 214 mcmodule-1.3.0/mcmodule/R/mcnode_rm.R |only mcmodule-1.3.0/mcmodule/R/sample_design.R |only mcmodule-1.3.0/mcmodule/R/set_mctable.R | 52 mcmodule-1.3.0/mcmodule/R/totals.R | 273 - mcmodule-1.3.0/mcmodule/R/utils.R | 107 mcmodule-1.3.0/mcmodule/README.md | 258 - mcmodule-1.3.0/mcmodule/build/vignette.rds |binary mcmodule-1.3.0/mcmodule/data/imports_exp.rda |binary mcmodule-1.3.0/mcmodule/data/imports_mcmodule.rda |binary mcmodule-1.3.0/mcmodule/data/imports_mctable.rda |binary mcmodule-1.3.0/mcmodule/inst/CITATION | 16 mcmodule-1.3.0/mcmodule/inst/doc/mcmodule.R | 46 mcmodule-1.3.0/mcmodule/inst/doc/mcmodule.Rmd | 78 mcmodule-1.3.0/mcmodule/inst/doc/mcmodule.html | 542 +- mcmodule-1.3.0/mcmodule/inst/doc/multivariate_operations.R | 8 mcmodule-1.3.0/mcmodule/inst/doc/multivariate_operations.Rmd | 10 mcmodule-1.3.0/mcmodule/inst/doc/multivariate_operations.html | 33 mcmodule-1.3.0/mcmodule/inst/doc/sensitivity_analysis.R |only mcmodule-1.3.0/mcmodule/inst/doc/sensitivity_analysis.Rmd |only mcmodule-1.3.0/mcmodule/inst/doc/sensitivity_analysis.html |only mcmodule-1.3.0/mcmodule/man/agg_totals.Rd | 8 mcmodule-1.3.0/mcmodule/man/check_mctable.Rd | 8 mcmodule-1.3.0/mcmodule/man/eval_module.Rd | 61 mcmodule-1.3.0/mcmodule/man/imports_exp.Rd | 8 mcmodule-1.3.0/mcmodule/man/imports_mcmodule.Rd | 8 mcmodule-1.3.0/mcmodule/man/imports_mctable.Rd | 2 mcmodule-1.3.0/mcmodule/man/keys_match.Rd | 5 mcmodule-1.3.0/mcmodule/man/matrix_to_mcnodes.Rd |only mcmodule-1.3.0/mcmodule/man/mc_compare.Rd |only mcmodule-1.3.0/mcmodule/man/mc_filter.Rd | 13 mcmodule-1.3.0/mcmodule/man/mc_keys.Rd | 6 mcmodule-1.3.0/mcmodule/man/mc_match.Rd | 14 mcmodule-1.3.0/mcmodule/man/mc_match_data.Rd | 16 mcmodule-1.3.0/mcmodule/man/mc_network.Rd | 13 mcmodule-1.3.0/mcmodule/man/mc_plot.Rd | 5 mcmodule-1.3.0/mcmodule/man/mc_summary.Rd | 5 mcmodule-1.3.0/mcmodule/man/mcmodule_converg.Rd | 11 mcmodule-1.3.0/mcmodule/man/mcmodule_corr.Rd | 23 mcmodule-1.3.0/mcmodule/man/mcmodule_dim_check.Rd | 1 mcmodule-1.3.0/mcmodule/man/mcmodule_info.Rd | 2 mcmodule-1.3.0/mcmodule/man/mcmodule_tornado.Rd |only mcmodule-1.3.0/mcmodule/man/mcnode_na_rm.Rd | 2 mcmodule-1.3.0/mcmodule/man/mcnode_null_rm.Rd |only mcmodule-1.3.0/mcmodule/man/mctable_bounds.Rd |only mcmodule-1.3.0/mcmodule/man/mctable_sobol_matrices.Rd |only mcmodule-1.3.0/mcmodule/man/optim_ndvar.Rd |only mcmodule-1.3.0/mcmodule/man/reset_sample_design.Rd |only mcmodule-1.3.0/mcmodule/man/set_mctable.Rd | 20 mcmodule-1.3.0/mcmodule/man/set_sample_design.Rd |only mcmodule-1.3.0/mcmodule/man/tidy_mcnode.Rd | 1 mcmodule-1.3.0/mcmodule/man/trial_totals.Rd | 10 mcmodule-1.3.0/mcmodule/tests/testthat/test-add_prefix.R | 96 mcmodule-1.3.0/mcmodule/tests/testthat/test-combine_modules.R | 10 mcmodule-1.3.0/mcmodule/tests/testthat/test-create_mcnodes.R | 57 mcmodule-1.3.0/mcmodule/tests/testthat/test-dim_match.R | 573 ++ mcmodule-1.3.0/mcmodule/tests/testthat/test-eval_module.R | 502 +- mcmodule-1.3.0/mcmodule/tests/testthat/test-get_node_list.R | 103 mcmodule-1.3.0/mcmodule/tests/testthat/test-imports_exp.R | 2 mcmodule-1.3.0/mcmodule/tests/testthat/test-mc_analysis.R | 546 ++ mcmodule-1.3.0/mcmodule/tests/testthat/test-mc_compare.R |only mcmodule-1.3.0/mcmodule/tests/testthat/test-mc_filter.R | 71 mcmodule-1.3.0/mcmodule/tests/testthat/test-mc_network.R | 199 mcmodule-1.3.0/mcmodule/tests/testthat/test-mc_plot.R | 438 + mcmodule-1.3.0/mcmodule/tests/testthat/test-mc_summary.R | 185 mcmodule-1.3.0/mcmodule/tests/testthat/test-mcnode_rm.R |only mcmodule-1.3.0/mcmodule/tests/testthat/test-sample_design.R |only mcmodule-1.3.0/mcmodule/tests/testthat/test-totals.R | 246 mcmodule-1.3.0/mcmodule/vignettes/mcmodule.Rmd | 78 mcmodule-1.3.0/mcmodule/vignettes/multivariate_operations.Rmd | 10 mcmodule-1.3.0/mcmodule/vignettes/sensitivity_analysis.Rmd |only 90 files changed, 6933 insertions(+), 2275 deletions(-)
Title: 'Serpstat' API Wrapper
Description: The primary goal of 'Serpstat' API <https://api-docs.serpstat.com/docs/serpstat-public-api/jenasqbwtxdlr-introduction-to-serpstat-api>
is to reduce manual SEO (search engine optimization) and PPC (pay-per-click)
tasks. You can automate your keywords research or competitors analysis
with this API wrapper.
Author: Alex Danilin [aut, cre]
Maintainer: Alex Danilin <alexnikdanilin@gmail.com>
Diff between serpstatr versions 0.4.0 dated 2025-08-20 and 0.4.1 dated 2026-05-25
DESCRIPTION | 8 - MD5 | 50 ++++---- NEWS.md | 4 R/audit.R | 12 +- R/project_management.R | 18 ++- R/rank_tracker.R | 8 - R/search_analytics.R | 6 - R/utility_functions.R | 58 +++++---- README.md | 2 man/serpstatr.Rd | 5 man/sst_au_get_summary.Rd | 84 +++++++------- man/sst_au_start.Rd | 81 +++++++------ man/sst_pm_create_project.Rd | 100 ++++++++--------- man/sst_pm_delete_project.Rd | 82 +++++++------ man/sst_pm_list_projects.Rd | 96 ++++++++-------- man/sst_rt_competitors.Rd | 2 man/sst_rt_positions_history.Rd | 2 man/sst_rt_project_regions.Rd | 2 man/sst_rt_serp_history.Rd | 2 man/sst_sa_domain_history.Rd | 182 +++++++++++++++---------------- man/sst_sa_domain_keywords_per_region.Rd | 106 +++++++++--------- man/sst_sa_domain_organic_competitors.Rd | 164 +++++++++++++-------------- man/sst_sa_domain_top_pages.Rd | 176 ++++++++++++++--------------- man/sst_sa_keywords.Rd | 3 man/sst_sa_related_keywords.Rd | 126 ++++++++++----------- tests/testthat/test_utils.R | 10 + 26 files changed, 726 insertions(+), 663 deletions(-)
Title: R Client for the 'OMOPHub' Medical Vocabulary API
Description: Provides an R interface to the 'OMOPHub' API for accessing
'OHDSI ATHENA' standardized medical vocabularies. Supports concept search,
semantic search using neural embeddings, concept similarity, vocabulary
exploration, hierarchy navigation, relationship queries, concept
mappings, and FHIR-to-OMOP concept resolution with automatic pagination.
Author: Alex Chen [aut, cre, cph],
Observational Health Data Science and Informatics [cph]
Maintainer: Alex Chen <alex@omophub.com>
Diff between omophub versions 1.7.0 dated 2026-04-30 and 1.8.0 dated 2026-05-25
DESCRIPTION | 6 - MD5 | 20 +++--- NEWS.md | 25 +++++++ R/fhir.R | 45 +++++++++++-- README.md | 22 ++++++ inst/doc/getting-started.Rmd | 22 ++++++ inst/doc/getting-started.html | 139 +++++++++++++++++++++++------------------- inst/examples/fhir_resolver.R | 75 ++++++++++++++++++++++ man/FhirResource.Rd | 16 ++++ tests/testthat/test-fhir.R | 138 +++++++++++++++++++++++++++++++++++++++++ vignettes/getting-started.Rmd | 22 ++++++ 11 files changed, 441 insertions(+), 89 deletions(-)
Title: Bayesian Error Propagation and Forecast Uncertainty
Decomposition
Description: Provides a full pipeline from regularized or standard regression
models (elastic net, linear models, generalized linear models, random
forests) to informed Bayesian priors, structured forecast uncertainty
decomposition (parameter / environmental / residual, plus a temporal
component when the model carries an autocorrelation term), and forecast
shelf life analysis (the quantification of when a forecast becomes
uninformative). Designed for ecological and genomic forecasting with
climate or environmental covariates. Methods build on Bürkner (2017)
<doi:10.18637/jss.v080.i01> for Bayesian regression via 'Stan',
Friedman, Hastie, and Tibshirani (2010) <doi:10.18637/jss.v033.i01>
for elastic net regularization, Wright and Ziegler (2017)
<doi:10.18637/jss.v077.i01> for random forests, and Vehtari, Gelman,
and Gabry (2017) <doi:10.1007/s11222-016-9696-4> for leave-one-out
cross-validation.
Author: Luis Javier Madrigal-Roca [aut, cre],
John Kelly [aut]
Maintainer: Luis Javier Madrigal-Roca <madrigalrocalj@yahoo.com>
Diff between ErrorTracer versions 1.0.2 dated 2026-05-04 and 1.1.0 dated 2026-05-25
DESCRIPTION | 17 - MD5 | 57 +-- NEWS.md | 54 +++ R/data.R | 36 +- R/decompose.R | 48 ++ R/plot.R | 64 ++- R/predict.R | 463 ++++++++++++++++++++++------ R/sensitivity.R | 35 +- R/shelf_life.R | 102 ++++-- R/utils.R | 34 ++ README.md | 8 build/vignette.rds |binary data/et_sim.rda |binary inst/doc/introduction.Rmd | 14 inst/doc/introduction.html | 33 + inst/doc/worked_example.R |only inst/doc/worked_example.Rmd |only inst/doc/worked_example.html |only man/decompose_uncertainty.Rd | 42 +- man/et_plot_calibration.Rd | 9 man/et_plot_decomposition.Rd | 7 man/et_predict.Rd | 38 +- man/et_sensitivity_profile.Rd | 14 man/et_sim.Rd | 36 +- man/shelf_life.Rd | 47 +- tests/testthat/test-decompose-nongaussian.R |only tests/testthat/test-decompose.R | 87 ++++- tests/testthat/test-shelf-life-projection.R |only tests/testthat/test-shelf_life.R | 62 ++- tests/testthat/test-utils.R | 8 tests/testthat/test-v-env-stability.R |only vignettes/introduction.Rmd | 14 vignettes/worked_example.Rmd |only 33 files changed, 1004 insertions(+), 325 deletions(-)
Title: A Lightweight Toolkit for Displaying Customizable Tables
Description: A lightweight toolkit that provides functions for printing tables from
input data in the R console or terminal with customizable formatting. Supported
outputs include American Psychological Association (APA)-style tables
(American Psychological Association, 2020, ISBN:9781433832178),
correlation matrices, contingency tables, and two-column summary tables.
Author: Joshua Marie [aut, cre]
Maintainer: Joshua Marie <joshua.marie.k@gmail.com>
Diff between tabstats versions 0.1.0 dated 2026-03-24 and 0.2.0 dated 2026-05-25
tabstats-0.1.0/tabstats/R/helpers-corr_matrix-extra.R |only tabstats-0.1.0/tabstats/R/helpers-corr_matrix.R |only tabstats-0.1.0/tabstats/R/new_corr_data.R |only tabstats-0.1.0/tabstats/R/table-corr_matrix.R |only tabstats-0.1.0/tabstats/man/corr_matrix.Rd |only tabstats-0.1.0/tabstats/man/new_corr_data.Rd |only tabstats-0.2.0/tabstats/DESCRIPTION | 6 - tabstats-0.2.0/tabstats/MD5 | 27 ++--- tabstats-0.2.0/tabstats/NAMESPACE | 2 tabstats-0.2.0/tabstats/NEWS.md | 8 + tabstats-0.2.0/tabstats/R/helpers-pairwise_matrix-extra.R |only tabstats-0.2.0/tabstats/R/helpers-pairwise_matrix.R |only tabstats-0.2.0/tabstats/R/helpers-table_default-extra.R | 4 tabstats-0.2.0/tabstats/R/new_pairwise_data.R |only tabstats-0.2.0/tabstats/R/table-pairwise_matrix.R |only tabstats-0.2.0/tabstats/R/table_default.R | 4 tabstats-0.2.0/tabstats/R/table_summary.R | 51 ++++++---- tabstats-0.2.0/tabstats/man/new_pairwise_data.Rd |only tabstats-0.2.0/tabstats/man/pairwise_matrix.Rd |only tabstats-0.2.0/tabstats/tests/testthat/test-corr_matrix.R | 16 +-- tabstats-0.2.0/tabstats/tests/testthat/test-pairwise_matrix.R |only 21 files changed, 72 insertions(+), 46 deletions(-)
Title: Building and Estimating Structural Equation Models
Description: A powerful, easy to use syntax for specifying and estimating complex
Structural Equation Models. Models can be estimated using Partial
Least Squares Path Modeling or Covariance-Based Structural Equation
Modeling or covariance based Confirmatory Factor Analysis (Ray, Danks, and Valdez 2021 <doi:10.2139/ssrn.3900621>).
Author: Soumya Ray [aut, ths],
Nicholas Patrick Danks [aut, cre],
Andre Calero Valdez [aut],
Juan Manuel Velasquez Estrada [ctb],
James Uanhoro [ctb],
Johannes Nakayama [ctb],
Lilian Koyan [ctb],
Laura Burbach [ctb],
Arturo Heynar Cano Bejar [ctb],
Susanne A [...truncated...]
Maintainer: Nicholas Patrick Danks <nicholasdanks@hotmail.com>
Diff between seminr versions 2.4.2 dated 2026-02-18 and 2.5.0 dated 2026-05-25
seminr-2.4.2/seminr/R/inspect_mmMatrix.R |only seminr-2.4.2/seminr/R/inspect_smMatrix.R |only seminr-2.4.2/seminr/man/get_construct_type.Rd |only seminr-2.4.2/seminr/man/is_sink.Rd |only seminr-2.5.0/seminr/DESCRIPTION | 10 seminr-2.5.0/seminr/MD5 | 124 + seminr-2.5.0/seminr/NAMESPACE | 23 seminr-2.5.0/seminr/NEWS.md | 52 seminr-2.5.0/seminr/R/boot_utils.R | 12 seminr-2.5.0/seminr/R/compute_metrics.R | 11 seminr-2.5.0/seminr/R/estimate_bootstrap.R | 30 seminr-2.5.0/seminr/R/estimate_cbsem.R | 8 seminr-2.5.0/seminr/R/estimate_pls.R | 13 seminr-2.5.0/seminr/R/estimate_pls_mga.R | 26 seminr-2.5.0/seminr/R/estimate_simplePLS.R | 13 seminr-2.5.0/seminr/R/evaluate_effects.R | 20 seminr-2.5.0/seminr/R/evaluate_measurement_model.R | 18 seminr-2.5.0/seminr/R/evaluate_model.R | 86 - seminr-2.5.0/seminr/R/evaluate_reliability.R | 62 seminr-2.5.0/seminr/R/evaluate_validity.R | 28 seminr-2.5.0/seminr/R/evaluate_warnings.R | 34 seminr-2.5.0/seminr/R/feature_consistent.R | 14 seminr-2.5.0/seminr/R/feature_higher_order.R | 48 seminr-2.5.0/seminr/R/feature_plspredict.R | 702 ++++++----- seminr-2.5.0/seminr/R/helpers-mmMatrix.R |only seminr-2.5.0/seminr/R/helpers-model.R |only seminr-2.5.0/seminr/R/helpers-smMatrix.R |only seminr-2.5.0/seminr/R/lavaan_syntax.R | 29 seminr-2.5.0/seminr/R/library.R | 114 - seminr-2.5.0/seminr/R/library_parallel.R |only seminr-2.5.0/seminr/R/plot_dot.R | 187 +- seminr-2.5.0/seminr/R/report_descriptives.R | 2 seminr-2.5.0/seminr/R/report_lavaan.R | 6 seminr-2.5.0/seminr/R/report_paths_and_intervals.R | 4 seminr-2.5.0/seminr/R/specify_interactions.R | 108 + seminr-2.5.0/seminr/README.md | 5 seminr-2.5.0/seminr/build/partial.rdb |binary seminr-2.5.0/seminr/build/vignette.rds |binary seminr-2.5.0/seminr/inst/doc/SEMinR.R | 38 seminr-2.5.0/seminr/inst/doc/SEMinR.Rmd | 72 + seminr-2.5.0/seminr/inst/doc/SEMinR.html | 97 + seminr-2.5.0/seminr/man/all_composites.Rd |only seminr-2.5.0/seminr/man/all_factors.Rd |only seminr-2.5.0/seminr/man/all_non_interactions.Rd |only seminr-2.5.0/seminr/man/as.reflective.Rd | 2 seminr-2.5.0/seminr/man/as.reflective.construct.Rd | 2 seminr-2.5.0/seminr/man/as.reflective.interaction.Rd | 2 seminr-2.5.0/seminr/man/as.reflective.measurement_model.Rd | 2 seminr-2.5.0/seminr/man/construct_items.Rd |only seminr-2.5.0/seminr/man/construct_mode.Rd |only seminr-2.5.0/seminr/man/construct_name.Rd |only seminr-2.5.0/seminr/man/construct_names.Rd |only seminr-2.5.0/seminr/man/construct_type.Rd |only seminr-2.5.0/seminr/man/dot_graph.Rd | 13 seminr-2.5.0/seminr/man/figures/model.png |binary seminr-2.5.0/seminr/man/figures/model2.png |binary seminr-2.5.0/seminr/man/is_only_endogenous.Rd |only seminr-2.5.0/seminr/man/plot.seminr_model.Rd | 4 seminr-2.5.0/seminr/man/predict.seminr_model.Rd |only seminr-2.5.0/seminr/man/predict_pls.Rd | 6 seminr-2.5.0/seminr/man/quadratic_term.Rd |only seminr-2.5.0/seminr/tests/testthat/_snaps |only seminr-2.5.0/seminr/tests/testthat/test-accessors-mmMatrix.R |only seminr-2.5.0/seminr/tests/testthat/test-assess-model.R | 39 seminr-2.5.0/seminr/tests/testthat/test-bootstrap.R | 12 seminr-2.5.0/seminr/tests/testthat/test-equal-item-count.R |only seminr-2.5.0/seminr/tests/testthat/test-hoc-bootstrap.R |only seminr-2.5.0/seminr/tests/testthat/test-parallel-setup.R |only seminr-2.5.0/seminr/tests/testthat/test-plot-bootstrapped.R | 5 seminr-2.5.0/seminr/tests/testthat/test-plot-dot-snapshots.R |only seminr-2.5.0/seminr/tests/testthat/test-pls-mga.R | 2 seminr-2.5.0/seminr/tests/testthat/test-plspredict.R | 201 ++- seminr-2.5.0/seminr/tests/testthat/test-quadratic.R |only seminr-2.5.0/seminr/tests/testthat/test-summary-cbsem.R | 10 seminr-2.5.0/seminr/tests/testthat/test-summary.R | 6 seminr-2.5.0/seminr/vignettes/SEMinR.Rmd | 72 + 76 files changed, 1494 insertions(+), 880 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- common effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- three-level meta-analysis model;
- generalised linear mixed model;
- logistic regression with penalised likelihood for rare events;
- Hartung-Knapp method for random effects model;
- Kenward-Roger method for random effects model;
- prediction interval and density of the prediction distribution;
- expected proportion of comparable studies with clinically important benefit or harm;
- statistical tests for funnel plot asymmetry;
- trim-and-fill method to evaluate bias in meta-analysis;
- meta-regression;
- cumulative meta-analysis and leave-one-out meta-analysis;
- import data from 'RevMan 5';
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between meta versions 8.3-0 dated 2026-04-02 and 8.5-0 dated 2026-05-25
DESCRIPTION | 17 MD5 | 84 - NAMESPACE | 22 NEWS.md | 61 - R/baujat.R | 2 R/blup.meta.R | 4 R/drapery.R | 4 R/estimates.R | 6 R/forest-internal.R | 56 R/forest.R | 2742 ++++++++++++++++++++------------------------- R/forest.metacum.R | 6 R/forest_dims.R |only R/forest_dims_internal.R |only R/forest_meta_internal.R |only R/labbe.R | 4 R/meta-het.R | 4 R/meta-internal.R | 40 R/meta-is.R | 3 R/meta-math.R | 7 R/meta-package.R | 48 R/meta-set.R | 10 R/meta-xlab.R | 7 R/metabin.R | 5 R/metacr.R | 2 R/metagen.R | 5 R/metainc.R | 5 R/metaprop.R | 2 R/metarate.R | 2 R/nnt.R | 2 R/print.meta.R | 14 R/print.metacum.R | 10 R/print.summary.meta.R | 2 R/rd.R | 2 R/read.cdir-internal.R |only R/read.cdir.R | 238 ++- R/save_plot.R |only R/settings.meta.R | 10 R/trimfill.R | 9 build/vignette.rds |binary inst/doc/meta-tutorial.pdf |binary inst/doc/meta-workflow.pdf |binary man/forest.meta.Rd | 173 +- man/forest_dims.Rd |only man/meta-package.Rd | 6 man/read.cdir.Rd | 9 man/settings.meta.Rd | 4 46 files changed, 1793 insertions(+), 1834 deletions(-)
Title: Fractional Factorial Designs with 2-Level Factors
Description: Regular and non-regular Fractional Factorial 2-level designs
can be created. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias).
Author: Ulrike Groemping [aut, cre]
Maintainer: Ulrike Groemping <ulrike.groemping@bht-berlin.de>
Diff between FrF2 versions 2.3-4 dated 2025-04-16 and 2.3-5 dated 2026-05-25
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/CIG.R | 4 ++-- R/colpick.R | 4 ++-- R/estimable2fis.R | 20 ++++++++++---------- R/mapcalc.block.R | 20 ++++++++++---------- build/partial.rdb |binary inst/NEWS | 6 ++++++ man/DanielPlot.Rd | 2 +- 9 files changed, 43 insertions(+), 37 deletions(-)
Title: Read and Write from the System Clipboard
Description: Simple utility functions to read from and write to
the Windows, OS X, and X11 clipboards.
Author: Matthew Lincoln [aut, cre] ,
Louis Maddox [ctb],
Steve Simpson [ctb],
Jennifer Bryan [ctb]
Maintainer: Matthew Lincoln <matthew.d.lincoln@gmail.com>
Diff between clipr versions 0.8.0 dated 2022-02-21 and 0.8.1 dated 2026-05-25
DESCRIPTION | 11 - MD5 | 28 +-- NEWS.md | 6 R/clipboard.R | 2 R/clipr-package.R | 6 R/linux_clipboard.R | 23 +-- R/read_clip_tbl.R | 7 README.md | 29 ++- build/vignette.rds |binary inst/doc/developing-with-clipr.html | 274 ++++++++++++++++++++++++++++++++---- man/clipr-package.Rd |only man/clipr.Rd | 1 man/read_clip_tbl.Rd | 3 man/write_clip.Rd | 2 tests/testthat/test-render.R | 17 ++ tests/testthat/test-sizes.R |only 16 files changed, 337 insertions(+), 72 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-15 0.1.1
Title: Extend 'ggplot2' with Layers and Scales for Spatial Uncertainty
Visualization
Description: Provide specialized 'ggplot2' layers and scales for spatial
uncertainty visualization, including bivariate choropleth maps, pixel maps,
glyph maps, and exceedance probability maps.
Author: Xueqi Ma [aut, cre, cph],
Emi Tanaka [aut, ths] ,
Weihao Li [ths] ,
Quan Vu [ths],
Francis Hui [ths]
Maintainer: Xueqi Ma <maggiexma07@gmail.com>
Diff between ggincerta versions 0.1.0 dated 2025-11-11 and 0.2.0 dated 2026-05-25
ggincerta-0.1.0/ggincerta/R/guide-glyph.r |only ggincerta-0.1.0/ggincerta/R/scale-exceed.R |only ggincerta-0.1.0/ggincerta/man/ggsfgl.Rd |only ggincerta-0.1.0/ggincerta/man/ggsfpi.Rd |only ggincerta-0.1.0/ggincerta/man/scale_bivariate.Rd |only ggincerta-0.1.0/ggincerta/man/scale_exceed.Rd |only ggincerta-0.1.0/ggincerta/tests/testthat/_snaps/geom-sf-exceed |only ggincerta-0.1.0/ggincerta/tests/testthat/_snaps/geom-sf-glyph/glyph-map.svg |only ggincerta-0.1.0/ggincerta/tests/testthat/_snaps/geom-sf-glyph/icone-glyph-map.svg |only ggincerta-0.1.0/ggincerta/tests/testthat/_snaps/geom-sf-glyph/pixel-map-with-bottom-horizontal-guides.svg |only ggincerta-0.1.0/ggincerta/tests/testthat/_snaps/geom-sf-glyph/semi-glyph-map.svg |only ggincerta-0.1.0/ggincerta/tests/testthat/_snaps/geom-sf-pixel/pixel-map-with-nas.svg |only ggincerta-0.1.0/ggincerta/tests/testthat/_snaps/scale-bivariate/bivariate-map-with-nas.svg |only ggincerta-0.1.0/ggincerta/tests/testthat/test-geom-sf-exceed.R |only ggincerta-0.2.0/ggincerta/DESCRIPTION | 24 ggincerta-0.2.0/ggincerta/MD5 | 108 ggincerta-0.2.0/ggincerta/NAMESPACE | 27 ggincerta-0.2.0/ggincerta/NEWS.md | 24 ggincerta-0.2.0/ggincerta/R/bivar-fade-palette.R |only ggincerta-0.2.0/ggincerta/R/bivar-palette.R | 63 ggincerta-0.2.0/ggincerta/R/duo.R | 30 ggincerta-0.2.0/ggincerta/R/geom-sf-chernoff.R |only ggincerta-0.2.0/ggincerta/R/geom-sf-glyph.R | 246 - ggincerta-0.2.0/ggincerta/R/geom-sf-pin.R |only ggincerta-0.2.0/ggincerta/R/geom-sf-pixel.R | 227 - ggincerta-0.2.0/ggincerta/R/geom_sf_dualmap.R |only ggincerta-0.2.0/ggincerta/R/guide-bivariate.R | 551 +- ggincerta-0.2.0/ggincerta/R/guide-glyph.R |only ggincerta-0.2.0/ggincerta/R/guide-vsup.R |only ggincerta-0.2.0/ggincerta/R/internal-imports.R | 1 ggincerta-0.2.0/ggincerta/R/scale-bivariate-manual.R |only ggincerta-0.2.0/ggincerta/R/scale-bivariate.R | 551 +- ggincerta-0.2.0/ggincerta/R/scale-chernoff.R |only ggincerta-0.2.0/ggincerta/R/scale-glyph-continuous.R | 50 ggincerta-0.2.0/ggincerta/R/scale-pixel.R |only ggincerta-0.2.0/ggincerta/R/scale-vsup.R |only ggincerta-0.2.0/ggincerta/R/vsup-quantize.R |only ggincerta-0.2.0/ggincerta/R/vsup_palette.R |only ggincerta-0.2.0/ggincerta/README.md | 162 ggincerta-0.2.0/ggincerta/build |only ggincerta-0.2.0/ggincerta/data/nc.rda |binary ggincerta-0.2.0/ggincerta/man/bivar_fade_palette.Rd |only ggincerta-0.2.0/ggincerta/man/bivar_palette.Rd |only ggincerta-0.2.0/ggincerta/man/bivariate_scale.Rd |only ggincerta-0.2.0/ggincerta/man/duo.Rd | 16 ggincerta-0.2.0/ggincerta/man/figures/README-unnamed-chunk-10-1.png |only ggincerta-0.2.0/ggincerta/man/figures/README-unnamed-chunk-3-1.png |binary ggincerta-0.2.0/ggincerta/man/figures/README-unnamed-chunk-4-1.png |binary ggincerta-0.2.0/ggincerta/man/figures/README-unnamed-chunk-5-1.png |binary ggincerta-0.2.0/ggincerta/man/figures/README-unnamed-chunk-6-1.png |binary ggincerta-0.2.0/ggincerta/man/figures/README-unnamed-chunk-7-1.png |binary ggincerta-0.2.0/ggincerta/man/figures/README-unnamed-chunk-8-1.png |binary ggincerta-0.2.0/ggincerta/man/figures/README-unnamed-chunk-9-1.png |only ggincerta-0.2.0/ggincerta/man/geom_sf_dualmap.Rd |only ggincerta-0.2.0/ggincerta/man/geom_sf_glyph.Rd |only ggincerta-0.2.0/ggincerta/man/geom_sf_pixel.Rd |only ggincerta-0.2.0/ggincerta/man/ggincerta-package.Rd | 4 ggincerta-0.2.0/ggincerta/man/guide_bivariate.Rd |only ggincerta-0.2.0/ggincerta/man/guide_glyph.Rd |only ggincerta-0.2.0/ggincerta/man/guide_vsup.Rd |only ggincerta-0.2.0/ggincerta/man/manual_bivariate_scale.Rd |only ggincerta-0.2.0/ggincerta/man/scale_fill_pixel.Rd |only ggincerta-0.2.0/ggincerta/man/vsup_palette.Rd |only ggincerta-0.2.0/ggincerta/man/vsup_quantize.Rd |only ggincerta-0.2.0/ggincerta/man/vsup_scale.Rd |only ggincerta-0.2.0/ggincerta/tests/testthat/_snaps/geom-sf-dualmap |only ggincerta-0.2.0/ggincerta/tests/testthat/_snaps/geom-sf-glyph/glyph-map-chernoff.svg |only ggincerta-0.2.0/ggincerta/tests/testthat/_snaps/geom-sf-glyph/glyph-map-drop.svg |only ggincerta-0.2.0/ggincerta/tests/testthat/_snaps/geom-sf-glyph/glyph-map-regular.svg |only ggincerta-0.2.0/ggincerta/tests/testthat/_snaps/geom-sf-pixel/pixel-map.svg | 2161 +++++++--- ggincerta-0.2.0/ggincerta/tests/testthat/_snaps/scale-bivariate.md |only ggincerta-0.2.0/ggincerta/tests/testthat/_snaps/scale-bivariate/bivariate-map-with-left-guide.svg | 416 - ggincerta-0.2.0/ggincerta/tests/testthat/_snaps/scale-bivariate/bivariate-map.svg | 396 - ggincerta-0.2.0/ggincerta/tests/testthat/_snaps/scale-vsup |only ggincerta-0.2.0/ggincerta/tests/testthat/test-duo.R | 6 ggincerta-0.2.0/ggincerta/tests/testthat/test-geom-sf-dualmap.R |only ggincerta-0.2.0/ggincerta/tests/testthat/test-geom-sf-glyph.R | 84 ggincerta-0.2.0/ggincerta/tests/testthat/test-geom-sf-pixel.R | 98 ggincerta-0.2.0/ggincerta/tests/testthat/test-scale-bivariate.R | 247 + ggincerta-0.2.0/ggincerta/tests/testthat/test-scale-vsup.R |only 80 files changed, 3708 insertions(+), 1784 deletions(-)