Title: Sports Physiology Analysis from Local 'Strava' Data
Description: Tools for reproducible, offline analysis of endurance-training data
exported from 'Strava'. Provides data import, quality-control,
cohort-reference, and visualization helpers for sports-science indicators
including acute:chronic workload ratio, aerobic efficiency, cardiovascular
decoupling, exposure, and personal-best profiles.
Author: Zhiang He [aut, cre],
Eunseop Kim [rev] for
rOpenSci, see
https://github.com/ropensci/software-review/issues/728),
Simon Nolte [rev] for
rOpenSci, see
https://github.com/ropensci/software-review/issues/728)
Maintainer: Zhiang He <ang@hezhiang.com>
Diff between Athlytics versions 0.1.2 dated 2025-05-16 and 1.0.5 dated 2026-05-27
Athlytics-0.1.2/Athlytics/R/strava_helpers.R |only Athlytics-0.1.2/Athlytics/R/zzz.R |only Athlytics-0.1.2/Athlytics/data/Athlytics_sample_data.RData |only Athlytics-0.1.2/Athlytics/inst/doc/Athlytics-introduction.R |only Athlytics-0.1.2/Athlytics/inst/doc/Athlytics-introduction.Rmd |only Athlytics-0.1.2/Athlytics/inst/doc/Athlytics-introduction.html |only Athlytics-0.1.2/Athlytics/inst/doc/Athlytics-introduction.md |only Athlytics-0.1.2/Athlytics/man/athlytics_sample_acwr.Rd |only Athlytics-0.1.2/Athlytics/man/athlytics_sample_decoupling.Rd |only Athlytics-0.1.2/Athlytics/man/athlytics_sample_ef.Rd |only Athlytics-0.1.2/Athlytics/man/athlytics_sample_exposure.Rd |only Athlytics-0.1.2/Athlytics/man/athlytics_sample_pbs.Rd |only Athlytics-0.1.2/Athlytics/man/fetch_strava_activities.Rd |only Athlytics-0.1.2/Athlytics/tests/testthat/helper-mockapi.R |only Athlytics-0.1.2/Athlytics/tests/testthat/helper-mockdata.R |only Athlytics-0.1.2/Athlytics/tests/testthat/test-calculate_decoupling.R |only Athlytics-0.1.2/Athlytics/tests/testthat/test-calculate_exposure.R |only Athlytics-0.1.2/Athlytics/tests/testthat/test-calculate_pbs.R |only Athlytics-0.1.2/Athlytics/tests/testthat/test-strava_helpers.R |only Athlytics-0.1.2/Athlytics/tests/testthat/testthat.R |only Athlytics-0.1.2/Athlytics/vignettes/Athlytics-introduction.Rmd |only Athlytics-1.0.5/Athlytics/DESCRIPTION | 53 Athlytics-1.0.5/Athlytics/LICENSE | 4 Athlytics-1.0.5/Athlytics/MD5 | 174 - Athlytics-1.0.5/Athlytics/NAMESPACE | 136 Athlytics-1.0.5/Athlytics/NEWS.md | 404 ++ Athlytics-1.0.5/Athlytics/R/Athlytics-package.R |only Athlytics-1.0.5/Athlytics/R/calculate_acwr.R | 752 +++-- Athlytics-1.0.5/Athlytics/R/calculate_acwr_ewma.R |only Athlytics-1.0.5/Athlytics/R/calculate_decoupling.R | 1018 ++++--- Athlytics-1.0.5/Athlytics/R/calculate_ef.R | 1052 ++++++- Athlytics-1.0.5/Athlytics/R/calculate_exposure.R | 537 +-- Athlytics-1.0.5/Athlytics/R/calculate_pbs.R | 751 +++-- Athlytics-1.0.5/Athlytics/R/cohort_reference.R |only Athlytics-1.0.5/Athlytics/R/color_palettes.R |only Athlytics-1.0.5/Athlytics/R/data.R | 164 - Athlytics-1.0.5/Athlytics/R/flag_quality.R |only Athlytics-1.0.5/Athlytics/R/internal_load.R |only Athlytics-1.0.5/Athlytics/R/load_local_activities.R |only Athlytics-1.0.5/Athlytics/R/parse_activity_file.R |only Athlytics-1.0.5/Athlytics/R/plot_acwr.R | 462 +-- Athlytics-1.0.5/Athlytics/R/plot_acwr_enhanced.R |only Athlytics-1.0.5/Athlytics/R/plot_decoupling.R | 375 -- Athlytics-1.0.5/Athlytics/R/plot_ef.R | 324 +- Athlytics-1.0.5/Athlytics/R/plot_exposure.R | 392 +- Athlytics-1.0.5/Athlytics/R/plot_pbs.R | 393 +- Athlytics-1.0.5/Athlytics/R/utils.R | 296 ++ Athlytics-1.0.5/Athlytics/README.md | 498 +-- Athlytics-1.0.5/Athlytics/build/partial.rdb |only Athlytics-1.0.5/Athlytics/build/vignette.rds |binary Athlytics-1.0.5/Athlytics/data/sample_acwr.rda |only Athlytics-1.0.5/Athlytics/data/sample_decoupling.rda |only Athlytics-1.0.5/Athlytics/data/sample_ef.rda |only Athlytics-1.0.5/Athlytics/data/sample_exposure.rda |only Athlytics-1.0.5/Athlytics/data/sample_pbs.rda |only Athlytics-1.0.5/Athlytics/inst/CITATION | 130 Athlytics-1.0.5/Athlytics/inst/doc/advanced_features.R |only Athlytics-1.0.5/Athlytics/inst/doc/advanced_features.Rmd |only Athlytics-1.0.5/Athlytics/inst/doc/advanced_features.html |only Athlytics-1.0.5/Athlytics/inst/doc/athlytics_introduction.R |only Athlytics-1.0.5/Athlytics/inst/doc/athlytics_introduction.Rmd |only Athlytics-1.0.5/Athlytics/inst/doc/athlytics_introduction.html |only Athlytics-1.0.5/Athlytics/inst/extdata |only Athlytics-1.0.5/Athlytics/man/Athlytics-package.Rd |only Athlytics-1.0.5/Athlytics/man/add_reference_bands.Rd |only Athlytics-1.0.5/Athlytics/man/athlytics_palette_nature.Rd |only Athlytics-1.0.5/Athlytics/man/athlytics_palette_vibrant.Rd |only Athlytics-1.0.5/Athlytics/man/calculate_acwr.Rd | 359 +- Athlytics-1.0.5/Athlytics/man/calculate_acwr_ewma.Rd |only Athlytics-1.0.5/Athlytics/man/calculate_cohort_reference.Rd |only Athlytics-1.0.5/Athlytics/man/calculate_decoupling.Rd | 284 +- Athlytics-1.0.5/Athlytics/man/calculate_ef.Rd | 364 ++ Athlytics-1.0.5/Athlytics/man/calculate_ef_from_stream.Rd |only Athlytics-1.0.5/Athlytics/man/calculate_exposure.Rd | 215 - Athlytics-1.0.5/Athlytics/man/calculate_pbs.Rd | 210 - Athlytics-1.0.5/Athlytics/man/figures |only Athlytics-1.0.5/Athlytics/man/find_best_effort.Rd |only Athlytics-1.0.5/Athlytics/man/flag_quality.Rd |only Athlytics-1.0.5/Athlytics/man/load_local_activities.Rd |only Athlytics-1.0.5/Athlytics/man/parse_activity_file.Rd |only Athlytics-1.0.5/Athlytics/man/parse_fit_file.Rd |only Athlytics-1.0.5/Athlytics/man/parse_gpx_file.Rd |only Athlytics-1.0.5/Athlytics/man/parse_tcx_file.Rd |only Athlytics-1.0.5/Athlytics/man/plot_acwr.Rd | 175 - Athlytics-1.0.5/Athlytics/man/plot_acwr_comparison.Rd |only Athlytics-1.0.5/Athlytics/man/plot_acwr_enhanced.Rd |only Athlytics-1.0.5/Athlytics/man/plot_decoupling.Rd | 205 - Athlytics-1.0.5/Athlytics/man/plot_ef.Rd | 144 - Athlytics-1.0.5/Athlytics/man/plot_exposure.Rd | 182 - Athlytics-1.0.5/Athlytics/man/plot_pbs.Rd | 200 - Athlytics-1.0.5/Athlytics/man/plot_with_reference.Rd |only Athlytics-1.0.5/Athlytics/man/sample_acwr.Rd |only Athlytics-1.0.5/Athlytics/man/sample_decoupling.Rd |only Athlytics-1.0.5/Athlytics/man/sample_ef.Rd |only Athlytics-1.0.5/Athlytics/man/sample_exposure.Rd |only Athlytics-1.0.5/Athlytics/man/sample_pbs.Rd |only Athlytics-1.0.5/Athlytics/man/summarize_quality.Rd |only Athlytics-1.0.5/Athlytics/man/theme_athlytics.Rd |only Athlytics-1.0.5/Athlytics/tests/testthat.R |only Athlytics-1.0.5/Athlytics/tests/testthat/_snaps |only Athlytics-1.0.5/Athlytics/tests/testthat/helper-test-data.R |only Athlytics-1.0.5/Athlytics/tests/testthat/test-acwr.R | 1302 ++++++--- Athlytics-1.0.5/Athlytics/tests/testthat/test-cohort-reference.R |only Athlytics-1.0.5/Athlytics/tests/testthat/test-decoupling.R | 760 +++-- Athlytics-1.0.5/Athlytics/tests/testthat/test-ef.R | 1392 ++++++++-- Athlytics-1.0.5/Athlytics/tests/testthat/test-exposure.R | 309 +- Athlytics-1.0.5/Athlytics/tests/testthat/test-flag-quality.R |only Athlytics-1.0.5/Athlytics/tests/testthat/test-internal-load.R |only Athlytics-1.0.5/Athlytics/tests/testthat/test-load-local-activities.R |only Athlytics-1.0.5/Athlytics/tests/testthat/test-parse-activity-file-stream.R |only Athlytics-1.0.5/Athlytics/tests/testthat/test-pbs.R | 775 ++++- Athlytics-1.0.5/Athlytics/tests/testthat/test-plot-acwr-enhanced.R |only Athlytics-1.0.5/Athlytics/tests/testthat/test-plot-exposure-comprehensive.R |only Athlytics-1.0.5/Athlytics/tests/testthat/test-plot-snapshots.R |only Athlytics-1.0.5/Athlytics/tests/testthat/test-utils.R | 162 - Athlytics-1.0.5/Athlytics/tests/testthat/test-vignettes.R |only Athlytics-1.0.5/Athlytics/vignettes/advanced_features.Rmd |only Athlytics-1.0.5/Athlytics/vignettes/athlytics_introduction.Rmd |only 118 files changed, 9775 insertions(+), 5178 deletions(-)
Title: Voter Distance to Polling Locations
Description: Calculates the distance between each voter in a voter file
(given lat/long coordinates or sf point geometries) and multiple
polling or vote-by-mail drop box locations. Returns nearest location,
k-nearest locations, or all locations within a distance threshold.
Core computation uses the Haversine formula implemented in C++ via
'Rcpp'.
Author: Loren Collingwood [aut, cre]
Maintainer: Loren Collingwood <lcollingwood@unm.edu>
This is a re-admission after prior archival of version 1.1 dated 2017-03-20
Diff between Rvoterdistance versions 1.1 dated 2017-03-20 and 2.0.0 dated 2026-05-27
Rvoterdistance-1.1/Rvoterdistance/R/dist_km.R |only Rvoterdistance-1.1/Rvoterdistance/R/dist_mile.R |only Rvoterdistance-1.1/Rvoterdistance/R/smorgesboard.R |only Rvoterdistance-1.1/Rvoterdistance/demo |only Rvoterdistance-1.1/Rvoterdistance/inst/doc/Rvoterdistance-manual.pdf |only Rvoterdistance-1.1/Rvoterdistance/man/deg2rad.Rd |only Rvoterdistance-1.1/Rvoterdistance/man/distanceEarth.Rd |only Rvoterdistance-1.1/Rvoterdistance/man/nearest_dbox.Rd |only Rvoterdistance-1.1/Rvoterdistance/man/nearest_dbox2.Rd |only Rvoterdistance-1.1/Rvoterdistance/man/rad2deg.Rd |only Rvoterdistance-1.1/Rvoterdistance/man/smorgesboard.Rd |only Rvoterdistance-1.1/Rvoterdistance/man/vecminInd.Rd |only Rvoterdistance-1.1/Rvoterdistance/src/haversine_dbox.cpp |only Rvoterdistance-1.1/Rvoterdistance/src/registerDynamicSymbol.c |only Rvoterdistance-2.0.0/Rvoterdistance/DESCRIPTION | 34 ++- Rvoterdistance-2.0.0/Rvoterdistance/MD5 | 59 +++--- Rvoterdistance-2.0.0/Rvoterdistance/NAMESPACE | 9 Rvoterdistance-2.0.0/Rvoterdistance/R/RcppExports.R | 24 -- Rvoterdistance-2.0.0/Rvoterdistance/R/Rvoterdistance-package.R |only Rvoterdistance-2.0.0/Rvoterdistance/R/data.R |only Rvoterdistance-2.0.0/Rvoterdistance/R/nearest_location.R |only Rvoterdistance-2.0.0/Rvoterdistance/R/utils.R |only Rvoterdistance-2.0.0/Rvoterdistance/R/voter_distance.R |only Rvoterdistance-2.0.0/Rvoterdistance/README.md |only Rvoterdistance-2.0.0/Rvoterdistance/build |only Rvoterdistance-2.0.0/Rvoterdistance/inst/doc/introduction.R |only Rvoterdistance-2.0.0/Rvoterdistance/inst/doc/introduction.Rmd |only Rvoterdistance-2.0.0/Rvoterdistance/inst/doc/introduction.html |only Rvoterdistance-2.0.0/Rvoterdistance/man/Rvoterdistance-package.Rd | 39 +-- Rvoterdistance-2.0.0/Rvoterdistance/man/dbox.Rd | 37 +-- Rvoterdistance-2.0.0/Rvoterdistance/man/dist_km.Rd | 47 +--- Rvoterdistance-2.0.0/Rvoterdistance/man/dist_mile.Rd | 47 +--- Rvoterdistance-2.0.0/Rvoterdistance/man/early_meck.Rd | 35 +-- Rvoterdistance-2.0.0/Rvoterdistance/man/haversine.Rd |only Rvoterdistance-2.0.0/Rvoterdistance/man/king_geo.Rd | 36 +-- Rvoterdistance-2.0.0/Rvoterdistance/man/nearest_location.Rd |only Rvoterdistance-2.0.0/Rvoterdistance/man/voter_meck.Rd | 35 +-- Rvoterdistance-2.0.0/Rvoterdistance/src/Makevars |only Rvoterdistance-2.0.0/Rvoterdistance/src/RcppExports.cpp | 98 ++++------ Rvoterdistance-2.0.0/Rvoterdistance/src/haversine.cpp |only Rvoterdistance-2.0.0/Rvoterdistance/src/knearest.cpp |only Rvoterdistance-2.0.0/Rvoterdistance/tests |only Rvoterdistance-2.0.0/Rvoterdistance/vignettes |only 43 files changed, 218 insertions(+), 282 deletions(-)
More information about Rvoterdistance at CRAN
Permanent link
Title: Hidden Markov Models for Multivariate Panel Data
Description: Estimates hidden Markov models from the family of Cholesky-decomposed Gaussian hidden Markov models (CDGHMM) under various missingness schemes. This family improves upon estimation of traditional Gaussian HMMs by introducing parsimony, as well as, controlling for dropped out observations and non-random missingness. See Neal, Sochaniwsky and McNicholas (2024) <DOI:10.1007/s11222-024-10462-0>.
Author: Mackenzie R. Neal [aut, cre] ,
Alexa A. Sochaniwsky [aut],
Paul D. McNicholas [aut]
Maintainer: Mackenzie R. Neal <nealm6@mcmaster.ca>
Diff between CDGHMM versions 0.1.2 dated 2025-06-12 and 0.1.3 dated 2026-05-27
DESCRIPTION | 10 MD5 | 11 NAMESPACE | 2 R/Support_functions.R |only R/cdghmm.R | 1009 +++++++------------------------------------------- inst/CITATION | 4 man/cdghmm.Rd | 8 7 files changed, 172 insertions(+), 872 deletions(-)
Title: Extracting and Visualizing Paleobiodiversity
Description: Contains various tools for conveniently downloading and editing taxon-specific datasets from the Paleobiology Database <https://paleobiodb.org>, extracting information on abundance, temporal distribution of subtaxa and taxonomic diversity through deep time, and visualizing these data in relation to phylogeny and stratigraphy.
Author: Darius Nau [aut, cre]
Maintainer: Darius Nau <dariusnau@gmx.at>
Diff between paleoDiv versions 0.4.6 dated 2025-03-23 and 0.4.12 dated 2026-05-27
DESCRIPTION | 8 MD5 | 38 ++-- NAMESPACE | 2 NEWS.md | 24 ++ R/data.R | 4 R/paleoDiv.R | 277 ++++++++++++++++++++++--------- build/vignette.rds |binary inst/doc/Paleobiodiversity_analysis.html | 34 +-- man/ages_archosauria.Rd | 2 man/divdistr_.Rd | 4 man/diversity_table.Rd | 2 man/multijitter.Rd | 9 + man/occ.cleanup.Rd | 9 - man/phylo.spindles.Rd | 3 man/rmeana.Rd | 15 + man/ts.periods.Rd | 12 + man/ts.stages.Rd | 11 + man/viol.Rd | 6 man/violins.Rd | 3 tests/testthat/test-paleodiv.R | 3 20 files changed, 325 insertions(+), 141 deletions(-)
Title: Import 'REDATAM' Files
Description: Import 'REDATAM' formats into R via the 'Open REDATAM' C++ library.
The full context of this project and details about the implementation are
available in <doi:10.1017/dap.2025.4> (Open Access).
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Lital Barkai [aut],
Ivan Krylov [ctb],
Arseny Kapoulkine [ctb] ,
Oriental Republic of Uruguay [dtc]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between redatam versions 2.3.0 dated 2026-05-17 and 2.3.1 dated 2026-05-27
DESCRIPTION | 6 - MD5 | 10 - NEWS.md | 14 ++ src/vendor/pugiconfig.hpp | 13 +- src/vendor/pugixml.cpp | 242 ++++++++++++++++++++++++++++++++++------------ src/vendor/pugixml.hpp | 81 ++++++++------- 6 files changed, 252 insertions(+), 114 deletions(-)
Title: Interface for Large Language Models via 'llama.cpp'
Description: Provides 'R' bindings to 'llama.cpp' for running Large Language Models
('LLMs') locally with optional 'Vulkan' GPU acceleration via 'ggmlR'. Supports
model loading, text generation, 'tokenization', token-to-piece conversion,
'embeddings' (single and batch), encoder-decoder inference, low-level batch
management, chat templates, 'LoRA' adapters, explicit backend/device selection,
multi-GPU split, and 'NUMA' optimization. Includes a high-level 'ragnar'-compatible
embedding provider ('embed_llamar'). Built on top of 'ggmlR' for efficient tensor
operations.
Author: Yuri Baramykov [aut, cre] ,
Georgi Gerganov [cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between llamaR versions 0.2.3 dated 2026-04-06 and 0.2.4 dated 2026-05-27
DESCRIPTION | 16 MD5 | 68 ++- NAMESPACE | 7 NEWS.md | 20 R/chat.R |only R/llama.R | 260 ++++++++++- R/serve.R |only README.md | 100 ++++ build |only cleanup | 4 inst/doc |only inst/examples |only inst/scripts/bench_batch.R |only inst/scripts/benchmark.R | 2 inst/scripts/benchmark_compare.R |only inst/scripts/diag_graph_reuse.R |only inst/scripts/diag_offload_profile.R |only inst/scripts/diag_splits.R |only inst/scripts/profile_gpu.R |only inst/scripts/profile_vs_llamacpp.R |only inst/scripts/profile_vs_llamacpp.sh |only inst/scripts/test.R | 2 inst/scripts/test_batch.R |only man/chat_llamar.Rd |only man/chat_llamar_stop.Rd |only man/llamaR-package.Rd | 2 man/llama_gen_begin.Rd |only man/llama_gen_end.Rd |only man/llama_gen_next.Rd |only man/llama_generate.Rd | 11 man/llama_generate_batch.Rd |only man/llama_load_model.Rd | 29 + man/llama_new_context.Rd | 37 + man/llama_serve_openai.Rd |only man/llama_tokenize.Rd | 12 src/llama-context.cpp | 99 ++++ src/llama-context.h | 2 src/llama.cpp | 4 src/llama.h | 5 src/r_llama_interface.cpp | 813 ++++++++++++++++++++++++++++++++++-- tests/testthat/test-basic.R | 50 ++ tests/testthat/test-chat.R |only tests/testthat/test-serve.R |only vignettes |only 44 files changed, 1451 insertions(+), 92 deletions(-)
Title: Query Composite Hypotheses
Description: Provides functions for the joint analysis of Q sets of
p-values obtained for the same list of items. This joint analysis is
performed by querying a composite hypothesis, i.e. an arbitrary
complex combination of simple hypotheses, as described in Mary-Huard
et al. (2021) <doi:10.1093/bioinformatics/btab592> and De Walsche et
al.(2025) <doi: 10.1093/nargab/lqaf118>. In this approach, the Q-uplet
of p-values associated with each item is distributed as a multivariate
mixture, where each of the 2^Q components corresponds to a specific
combination of simple hypotheses. The dependence between the p-value
series is considered using a Gaussian copula function. A p-value for
the composite hypothesis test is derived from the posterior
probabilities.
Author: Tristan Mary-Huard [aut, cre] ,
Annaig De Walsche [aut] ,
Franck Gauthier [ctb]
Maintainer: Tristan Mary-Huard <tristan.mary-huard@agroparistech.fr>
Diff between qch versions 2.1.2 dated 2026-02-16 and 2.1.3 dated 2026-05-27
COPYING |only DESCRIPTION | 10 MD5 | 53 - NAMESPACE | 1 R/Data.R | 54 - R/EM_functions.R | 842 +++++++++++----------- R/FastKerFDR_functions.R | 762 ++++++++++--------- R/GetHinfo.R | 505 ++++++------- R/RcppExports.R | 39 + R/pi0est_from_pkg_qvalue.R |only R/qch_fit.R | 665 ++++++++--------- R/qch_test.R | 473 ++++++------ inst/WORDLIST | 98 +- man/EM_calibration_gaussian.Rd | 87 +- man/EM_calibration_gaussian_memory.Rd | 5 man/EM_calibration_indep.Rd | 4 man/EM_calibration_indep_memory.Rd | 5 man/FastKerFdr_signed.Rd | 84 +- man/FastKerFdr_unsigned.Rd | 85 +- man/GetH1AtLeast.Rd | 62 - man/GetH1Equal.Rd | 62 - man/PvalSets_cor.Rd | 42 - man/f1_separation_signed.Rd | 64 - man/last_incomplete_trapezoid_arma.Rd |only man/qch-package.Rd | 74 - man/qch.fit.Rd | 13 man/remove_decreasing_values_cpp.Rd |only man/remove_decreasing_values_cpp_slow_ordering.Rd |only src/RcppExports.cpp | 43 + src/updatePrior_rcpp.cpp | 786 +++++++++++--------- 30 files changed, 2617 insertions(+), 2301 deletions(-)
Title: Bayesian Screening and Variable Selection
Description: Performs Bayesian variable screening and selection for ultra-high dimensional linear regression models.Also contains an user friendly web application to perform multi trait GWAS.
Author: Dongjin Li [aut, cre],
Debarshi Chakraborty [aut],
Somak Dutta [aut],
Vivekananda Roy [ctb]
Maintainer: Dongjin Li <liyangxiaobei@gmail.com>
Diff between bravo versions 3.2.2 dated 2024-10-29 and 4.0.0 dated 2026-05-27
DESCRIPTION | 38 +++++++++++++++----------------------- MD5 | 35 +++++++++++++++++++++++++++++++++-- NAMESPACE | 30 ++++++++++++++++++++++++++---- R/calc_functions.R |only R/sparse_convert.R |only R/svenetics.R |only R/xzpredIntv.R |only R/xzpredPoint.R |only R/xzpredict.sven.R |only R/xzsven_new.R |only inst |only man/FDR_WS.Rd |only man/FDR_corrected.Rd |only man/FPR_WS.Rd |only man/FPR_corrected.Rd |only man/TPR_WS.Rd |only man/TPR_corrected.Rd |only man/basic.sven.model.Rd |only man/bwas.Rd |only man/calc.runtime.Rd |only man/clean.Rd |only man/create_param_mat.Rd |only man/dense2sparse.Rd |only man/dense_to_sparse_converter.Rd |only man/jcidx.Rd |only man/parameter_selection.Rd |only man/pipeline_single_trait.Rd |only man/run_all_params.Rd |only man/svenetics.Rd |only man/svenetics_pipeline.Rd |only man/tune.sven.Rd |only man/tune.sven.all.Rd |only man/unite.sven.Rd |only 33 files changed, 74 insertions(+), 29 deletions(-)
Title: Workflows for Health Technology Assessments in R using Discrete
EveNts
Description: Toolkit to support and perform discrete event simulations with and without
resource constraints in the context of health technology assessments (HTA).
The package focuses on cost-effectiveness modelling and aims to be submission-ready
to relevant HTA bodies in alignment with 'NICE TSD 15'
<https://sheffield.ac.uk/nice-dsu/tsds/patient-level-simulation>.
More details an examples can be found in the package website <https://jsanchezalv.github.io/WARDEN/>.
Author: Javier Sanchez Alvarez [aut, cre],
Gabriel Lemyre [ctb],
Valerie Aponte Ribero [ctb]
Maintainer: Javier Sanchez Alvarez <javiersanchezeco@gmail.com>
Diff between WARDEN versions 2.0.2 dated 2026-03-18 and 2.0.3 dated 2026-05-27
WARDEN-2.0.2/WARDEN/tests/testthat/test_model_runs.R |only WARDEN-2.0.2/WARDEN/tests/testthat/test_queues.R |only WARDEN-2.0.3/WARDEN/DESCRIPTION | 11 WARDEN-2.0.3/WARDEN/MD5 | 55 WARDEN-2.0.3/WARDEN/NAMESPACE | 2 WARDEN-2.0.3/WARDEN/NEWS.md | 9 WARDEN-2.0.3/WARDEN/R/RcppExports.R | 4 WARDEN-2.0.3/WARDEN/R/engine_helper_f.R | 359 +-- WARDEN-2.0.3/WARDEN/R/input_f.R | 353 ++ WARDEN-2.0.3/WARDEN/R/results_summary_f.R | 34 WARDEN-2.0.3/WARDEN/R/run_engine.R | 52 WARDEN-2.0.3/WARDEN/R/run_engine_constrained.R | 43 WARDEN-2.0.3/WARDEN/R/run_sim.R | 102 WARDEN-2.0.3/WARDEN/R/run_sim_parallel.R | 232 + WARDEN-2.0.3/WARDEN/inst/doc/example_ssd.R | 101 WARDEN-2.0.3/WARDEN/inst/doc/example_ssd.Rmd | 122 - WARDEN-2.0.3/WARDEN/inst/doc/example_ssd.html | 571 ++-- WARDEN-2.0.3/WARDEN/man/add_item.Rd | 25 WARDEN-2.0.3/WARDEN/man/input_block.Rd |only WARDEN-2.0.3/WARDEN/man/run_sim.Rd | 7 WARDEN-2.0.3/WARDEN/man/run_sim_parallel.Rd | 5 WARDEN-2.0.3/WARDEN/src/RcppExports.cpp | 12 WARDEN-2.0.3/WARDEN/src/condq.cpp | 137 - WARDEN-2.0.3/WARDEN/src/evt_queue.cpp | 16 WARDEN-2.0.3/WARDEN/src/resource_constrained.cpp | 11 WARDEN-2.0.3/WARDEN/tests/testthat/test-input_f.R | 1193 ++++++++++ WARDEN-2.0.3/WARDEN/tests/testthat/test-model_runs.R |only WARDEN-2.0.3/WARDEN/tests/testthat/test-queues.R |only WARDEN-2.0.3/WARDEN/tests/testthat/test-regression_eBC.R |only WARDEN-2.0.3/WARDEN/tests/testthat/test-regression_inputs_selector.R |only WARDEN-2.0.3/WARDEN/tests/testthat/test-regression_ssd.R |only WARDEN-2.0.3/WARDEN/tests/testthat/test-regression_ssd_constrained.R |only WARDEN-2.0.3/WARDEN/vignettes/example_ssd.Rmd | 122 - 33 files changed, 2649 insertions(+), 929 deletions(-)
Title: Computation of Topp-Leone Cauchy Rayleigh (TLCAR )
distribution's properties
Description: Provides a comprehensive suite of statistical tools for analyzing, simulating, and computing properties of the Topp-Leone Cauchy Rayleigh (TLCAR) distribution, a versatile distribution amalgamating features of the Topp-Leone, Cauchy, and Rayleigh distributions, ideal for modeling intricate, heterogeneous data across scientific domains. See Atchadé, M.N., Bogninou, M.J., and Djibril, A.M. (2023) <doi:10.1007/s44199-023-00066-4> and Atchadé, M.N., Bogninou, M.J., and Djibril, A.M. (2024) <doi:10.1007/s44199-023-00069-1> for further insights.
Author: Mintode Nicodeme Atchade [aut],
Jude Mahoule Bogninou [aut, cre]
Maintainer: Jude Mahoule Bogninou <mahoulejude2001@gmail.com>
Diff between TLCAR versions 0.1.0 dated 2024-02-19 and 0.1.1 dated 2026-05-27
DESCRIPTION | 10 ++-- MD5 | 12 ++--- R/analysis.R | 2 R/fitTLCAR.R | 1 build/vignette.rds |binary inst/doc/Practical-Guide-to-Using-TLCAR-in-R.html | 45 +++++++++++----------- man/sTLCAR.Rd | 1 7 files changed, 38 insertions(+), 33 deletions(-)
Title: Interactive Reliability Probability Plots
Description: Build interactive Reliability Probability Plots with 'plotly' by Carson Sievert (2020) <https://plotly.com/r/>, an interactive web-based graphing library.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaPlotR versions 0.5 dated 2026-04-18 and 0.6 dated 2026-05-27
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/plotly_nhpp.R | 32 ++++++++++++++++---------------- man/plotly_nhpp.Rd | 16 ++++++++-------- tests/testthat/test-nhpp.R | 2 +- 6 files changed, 39 insertions(+), 33 deletions(-)
Title: Lightweight Framework for Orchestrating Multi-Agent Large
Language Models
Description: Provides tools for creating agents with persistent state using
R6 classes <https://cran.r-project.org/package=R6> and the 'ellmer'
package <https://cran.r-project.org/package=ellmer>. Tracks prompts,
messages, and agent metadata for reproducible, multi-turn large language
model sessions.
Author: Mohamed El Fodil Ihaddaden [aut, cre]
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Diff between mini007 versions 0.3.0 dated 2026-01-12 and 0.4.0 dated 2026-05-27
DESCRIPTION | 8 MD5 | 23 NAMESPACE | 2 NEWS.md | 8 R/Agent.R | 68 - R/Workflow.R |only README.md | 1980 +----------------------------- man/Agent.Rd | 65 man/LeadAgent.Rd | 1 man/Workflow.Rd |only man/WorkflowAgent.Rd |only man/figures/README-unnamed-chunk-23-1.png |binary man/figures/README-unnamed-chunk-24-1.png |only tests/testthat/test-agent.R | 20 tests/testthat/test-workflow.R |only 15 files changed, 307 insertions(+), 1868 deletions(-)
Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially
distributed animal population sampled with an array of passive detectors,
such as traps, or by searching polygons or transects. Models incorporating
distance-dependent detection are fitted by maximizing the likelihood.
Tools are included for data manipulation and model selection.
Author: Murray Efford [aut, cre] ,
Philipp Jund [ctb] ,
David Fletcher [ctb] ,
Yan Ru Choo [ctb]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secr versions 5.4.2 dated 2026-02-24 and 5.4.3 dated 2026-05-27
DESCRIPTION | 8 ++++---- MD5 | 26 ++++++++++++++------------ NAMESPACE | 2 ++ NEWS | 10 ++++++++++ R/binCovariate.R | 20 +++++++++++++++----- R/exportedutility.R | 9 +++++---- R/fillNA.R |only inst/doc/secr-datainput.pdf |binary inst/doc/secr-overview.pdf |binary man/addCovariates.Rd | 6 +++++- man/binCovariate.Rd | 16 ++++++++++++---- man/fillNA.Rd |only man/secr-internal.Rd | 4 ++-- man/secr-package.Rd | 4 ++-- src/makegk.cpp | 18 ++++++++++++++++-- 15 files changed, 87 insertions(+), 36 deletions(-)
Title: Learning Modules for Reliability Analysis
Description: Learning modules for reliability analysis including modules for Reliability,
Availability, and Maintainability (RAM) Analysis, Life Data Analysis, Reliability Testing,
Repairable Systems Analysis, and Reliability Block Diagrams.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaLearnR versions 0.3 dated 2026-01-06 and 0.5 dated 2026-05-27
ReliaLearnR-0.3/ReliaLearnR/inst/paper |only ReliaLearnR-0.5/ReliaLearnR/DESCRIPTION | 20 ReliaLearnR-0.5/ReliaLearnR/MD5 | 78 ++- ReliaLearnR-0.5/ReliaLearnR/NAMESPACE | 2 ReliaLearnR-0.5/ReliaLearnR/NEWS.md | 28 + ReliaLearnR-0.5/ReliaLearnR/R/helpers.R | 39 - ReliaLearnR-0.5/ReliaLearnR/R/rbd.R |only ReliaLearnR-0.5/ReliaLearnR/R/rs.R |only ReliaLearnR-0.5/ReliaLearnR/README.md | 35 + ReliaLearnR-0.5/ReliaLearnR/inst/CITATION | 24 - ReliaLearnR-0.5/ReliaLearnR/inst/doc/helpers.R | 2 ReliaLearnR-0.5/ReliaLearnR/inst/doc/helpers.Rmd | 14 ReliaLearnR-0.5/ReliaLearnR/inst/doc/helpers.html | 21 ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/lda/lda.Rmd | 106 ++++ ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/lda/lda.html |only ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/lda/lda_files |only ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/ram/ram.Rmd | 260 +++++++++++- ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/ram/ram.html |only ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/ram/ram_files |only ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/ram/rsconnect |only ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/rbd |only ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/rs |only ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/rt/rt.Rmd | 85 +++ ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/rt/rt.html |only ReliaLearnR-0.5/ReliaLearnR/inst/tutorials/rt/rt_files |only ReliaLearnR-0.5/ReliaLearnR/man/ReliaLearnR-package.Rd | 2 ReliaLearnR-0.5/ReliaLearnR/man/rbd.Rd |only ReliaLearnR-0.5/ReliaLearnR/man/rs.Rd |only ReliaLearnR-0.5/ReliaLearnR/tests/testthat/test-helpers.R | 44 +- ReliaLearnR-0.5/ReliaLearnR/tests/testthat/test-launchers.R | 10 ReliaLearnR-0.5/ReliaLearnR/vignettes/helpers.Rmd | 14 31 files changed, 670 insertions(+), 114 deletions(-)
Title: Power for Meta-Analysis of Dependent Effects
Description: Provides functions to compute and plot power levels, minimum detectable effect sizes, and minimum required sample sizes for the test of the overall average effect size in meta-analysis of dependent effect sizes.
Author: Mikkel H. Vembye [aut, cre] ,
James E. Pustejovsky [aut]
Maintainer: Mikkel H. Vembye <mikkel.vembye@gmail.com>
Diff between POMADE versions 0.2.0 dated 2024-02-13 and 0.2.1 dated 2026-05-27
DESCRIPTION | 17 MD5 | 46 - NEWS.md | 20 R/MDES_MADE.R | 10 R/data-documentation.R | 58 +- R/min_studies_MADE.R | 10 R/plot_MADE.R | 49 + R/plot_MADE.mdes.R | 8 R/plot_MADE.min_studies.R | 77 +- R/plot_MADE.power.R | 17 R/power_MADE.R | 1087 ++++++++++++++++++-------------------- build/partial.rdb |binary man/VWB23_pilot.Rd | 78 +- man/figures/README-example2-1.png |binary man/figures/README-example3-1.png |binary man/figures/README-example4-1.png |binary man/figures/README-example5-1.png |binary man/figures/README-example7-1.png |binary man/figures/README-example8-1.png |only man/figures/README-example9-1.png |only man/plot_MADE.Rd | 40 + man/plot_MADE.mdes.Rd | 36 - man/plot_MADE.min_studies.Rd | 36 - man/plot_MADE.power.Rd | 36 - tests/testthat/test-plot_MADE.R | 112 +++ 25 files changed, 984 insertions(+), 753 deletions(-)
Title: Kaplan-Meier Plot with 'ggplot2'
Description: The function 'jskm()' creates publication quality Kaplan-Meier plot with at risk tables below. 'svyjskm()' provides plot for weighted Kaplan-Meier estimator.
Author: Jinseob Kim [aut, cre] ,
yoonkyoung Chun [aut],
Zarathu [cph, fnd],
sungho Choi [aut],
Mingu Jee [aut],
Wonbin Hahn [aut],
Taehong Kim [aut],
Sangho Oh [aut],
Sewon Lee [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jskm versions 0.6.2 dated 2026-03-17 and 0.6.3 dated 2026-05-27
DESCRIPTION | 8 ++--- MD5 | 46 +++++++++++++++--------------- NEWS.md | 6 +++ R/jskm.R | 37 +++++++++++++++--------- R/svyjskm.R | 35 +++++++++++++++------- README.md | 4 +- inst/doc/jskm.html | 18 +++-------- man/figures/README-unnamed-chunk-1-1.png |binary man/figures/README-unnamed-chunk-1-2.png |binary man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-3-2.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-4-2.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-7-2.png |binary man/figures/README-unnamed-chunk-7-3.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/figures/README-unnamed-chunk-8-2.png |binary man/figures/README-unnamed-chunk-8-3.png |binary man/figures/README-unnamed-chunk-9-1.png |binary 24 files changed, 87 insertions(+), 67 deletions(-)
Title: Graphical Models Estimation from Multiple Sources
Description: Estimates networks of conditional dependencies (Gaussian graphical models) from multiple classes of data (similar but not exactly, i.e. measurements on different equipment, in different locations or for various sub-types). Package also allows to generate simulation data and evaluate the performance. Implementation of the method described in Angelini, De Canditiis and Plaksienko (2022) <doi:10.3390/math10213983>.
Author: Anna Plaksienko [aut, cre] ,
Claudia Angelini [aut] ,
Daniela De Canditiis [aut]
Maintainer: Anna Plaksienko <anna@plaxienko.com>
Diff between jewel versions 2.0.2 dated 2024-05-22 and 2.0.3 dated 2026-05-27
DESCRIPTION | 16 +++++++++------- MD5 | 8 ++++---- R/generateData_rewire.R | 2 +- build/vignette.rds |binary inst/doc/jewel_vignette.html | 28 +++++++++++++++------------- 5 files changed, 29 insertions(+), 25 deletions(-)
Title: Study Design Toolbox for Movement Ecology Studies
Description: Toolbox and 'shiny' application to help researchers design
movement ecology studies, focusing on two key objectives: estimating
home range areas, and estimating fine-scale movement behavior,
specifically speed and distance traveled. It provides interactive
simulations and methodological guidance to support study planning and
decision-making. The application is described in Silva et al. (2023)
<doi:10.1111/2041-210X.14153>.
Author: Ines Silva [cre, aut, cph]
Maintainer: Ines Silva <i.simoes-silva@hzdr.de>
Diff between movedesign versions 0.3.2 dated 2025-07-30 and 0.3.3 dated 2026-05-27
movedesign-0.3.2/movedesign/man/fitting_model.Rd |only movedesign-0.3.2/movedesign/man/movedesign_preprocess.Rd |only movedesign-0.3.2/movedesign/man/print.movedesign_preprocess.Rd |only movedesign-0.3.2/movedesign/man/summary.movedesign_preprocess.Rd |only movedesign-0.3.3/movedesign/DESCRIPTION | 25 movedesign-0.3.3/movedesign/MD5 | 147 movedesign-0.3.3/movedesign/NAMESPACE | 161 movedesign-0.3.3/movedesign/NEWS.md | 255 movedesign-0.3.3/movedesign/R/app_server.R | 130 movedesign-0.3.3/movedesign/R/app_ui.R | 2 movedesign-0.3.3/movedesign/R/data.R | 2 movedesign-0.3.3/movedesign/R/fct_analyses.R | 277 movedesign-0.3.3/movedesign/R/fct_ctmm.R | 1838 - movedesign-0.3.3/movedesign/R/fct_helpers.R | 201 movedesign-0.3.3/movedesign/R/fct_main.R |10598 ++++++---- movedesign-0.3.3/movedesign/R/fct_meta.R | 1841 - movedesign-0.3.3/movedesign/R/fct_sims.R | 851 movedesign-0.3.3/movedesign/R/global.R | 49 movedesign-0.3.3/movedesign/R/mod_blocks.R | 889 movedesign-0.3.3/movedesign/R/mod_comp_alerts.R | 309 movedesign-0.3.3/movedesign/R/mod_comp_m.R | 4157 ++- movedesign-0.3.3/movedesign/R/mod_comp_pars.R | 1212 - movedesign-0.3.3/movedesign/R/mod_comp_settings.R | 442 movedesign-0.3.3/movedesign/R/mod_comp_tour.R | 3353 +-- movedesign-0.3.3/movedesign/R/mod_tab_about.R | 1073 - movedesign-0.3.3/movedesign/R/mod_tab_ctsd.R | 67 movedesign-0.3.3/movedesign/R/mod_tab_data_select.R | 40 movedesign-0.3.3/movedesign/R/mod_tab_data_upload.R | 18 movedesign-0.3.3/movedesign/R/mod_tab_design.R | 6922 +++--- movedesign-0.3.3/movedesign/R/mod_tab_hrange.R | 55 movedesign-0.3.3/movedesign/R/mod_tab_meta.R | 5694 +++-- movedesign-0.3.3/movedesign/R/mod_tab_report.R | 1625 - movedesign-0.3.3/movedesign/R/mod_tab_sims.R | 13 movedesign-0.3.3/movedesign/R/mod_viz.R | 2019 + movedesign-0.3.3/movedesign/R/mod_viz_meta.R | 202 movedesign-0.3.3/movedesign/R/utils_helpers.R | 469 movedesign-0.3.3/movedesign/R/utils_main.R | 3526 ++- movedesign-0.3.3/movedesign/R/utils_meta.R | 2144 +- movedesign-0.3.3/movedesign/R/utils_report.R | 523 movedesign-0.3.3/movedesign/R/utils_sims.R | 625 movedesign-0.3.3/movedesign/README.md | 232 movedesign-0.3.3/movedesign/build/vignette.rds |binary movedesign-0.3.3/movedesign/inst/CITATION | 23 movedesign-0.3.3/movedesign/inst/app/www/custom.css | 91 movedesign-0.3.3/movedesign/inst/app/www/introjs.css | 283 movedesign-0.3.3/movedesign/inst/doc/issues.html | 185 movedesign-0.3.3/movedesign/inst/doc/movedesign.html | 148 movedesign-0.3.3/movedesign/inst/doc/tutorial_ind.html | 148 movedesign-0.3.3/movedesign/inst/doc/tutorial_pop.html | 148 movedesign-0.3.3/movedesign/inst/golem-config.yml | 2 movedesign-0.3.3/movedesign/man/estimate_speed.Rd | 80 movedesign-0.3.3/movedesign/man/fitting_models.Rd |only movedesign-0.3.3/movedesign/man/md_check.Rd | 182 movedesign-0.3.3/movedesign/man/md_compare.Rd |only movedesign-0.3.3/movedesign/man/md_compare_preview.Rd |only movedesign-0.3.3/movedesign/man/md_configure.Rd | 93 movedesign-0.3.3/movedesign/man/md_merge.Rd | 141 movedesign-0.3.3/movedesign/man/md_optimize.Rd | 228 movedesign-0.3.3/movedesign/man/md_plot.Rd | 232 movedesign-0.3.3/movedesign/man/md_plot_preview.Rd | 144 movedesign-0.3.3/movedesign/man/md_plot_replicates.Rd |only movedesign-0.3.3/movedesign/man/md_prepare.Rd | 316 movedesign-0.3.3/movedesign/man/md_replicate.Rd | 232 movedesign-0.3.3/movedesign/man/md_run.Rd | 164 movedesign-0.3.3/movedesign/man/md_simulate.Rd |only movedesign-0.3.3/movedesign/man/md_stack.Rd |only movedesign-0.3.3/movedesign/man/movedesign-package.Rd | 5 movedesign-0.3.3/movedesign/man/movedesign_processed.Rd |only movedesign-0.3.3/movedesign/man/movmods.Rd | 90 movedesign-0.3.3/movedesign/man/new_movedesign.Rd | 51 movedesign-0.3.3/movedesign/man/plot.movedesign_optimized.Rd |only movedesign-0.3.3/movedesign/man/print.movedesign_optimized.Rd |only movedesign-0.3.3/movedesign/man/print.movedesign_output.Rd | 62 movedesign-0.3.3/movedesign/man/print.movedesign_processed.Rd |only movedesign-0.3.3/movedesign/man/read_md.Rd |only movedesign-0.3.3/movedesign/man/run_meta_loocv.Rd | 136 movedesign-0.3.3/movedesign/man/run_meta_resamples.Rd | 256 movedesign-0.3.3/movedesign/man/simulating_data.Rd | 2 movedesign-0.3.3/movedesign/man/summary.movedesign_check.Rd | 34 movedesign-0.3.3/movedesign/man/summary.movedesign_optimized.Rd |only movedesign-0.3.3/movedesign/man/summary.movedesign_output.Rd | 108 movedesign-0.3.3/movedesign/man/summary.movedesign_processed.Rd |only movedesign-0.3.3/movedesign/tests/testthat/test-fct_helpers.R | 104 83 files changed, 33655 insertions(+), 22019 deletions(-)
More information about CoalescentPhylo at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-06 1.0
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2025-07-01 0.2.2
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2022-01-11 0.1.1
2022-01-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2019-08-03 0.9.8
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2025-11-23 1.1.5
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2022-07-06 0.5.1
2022-03-29 0.4.0
2021-10-07 0.3.1
2021-06-17 0.2.1
2021-04-08 0.1.6
2020-11-30 0.1.5
2020-11-12 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-09 5.2
2018-10-05 5.1
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2018-08-15 4.2
2018-05-17 4.0
2018-04-13 3.0
2018-02-08 2.1
2018-01-05 1.4
2017-11-16 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2017-06-06 1.0-2
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2025-07-21 0.8.0
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2024-02-22 0.1.1
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Title: Download Australian Energy Market Operator Data
Description: Fetch Australian Energy Market Operator (AEMO)
public data from 'NEMweb' <http://nemweb.com.au> and the
Market Management System Data Model (MMSDM) historical
archive. Provides tidy access to 5-minute and 30-minute
wholesale electricity prices, regional demand, dispatch-unit
output, interconnector flows, rooftop photovoltaic generation,
generator bids, predispatch forecasts, frequency control
ancillary services markets, and gas market data across the
National Electricity Market (NEM) regions. Data is published
by AEMO under its Copyright Permissions Notice
<https://www.aemo.com.au/privacy-and-legal-notices/copyright-permissions>.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between aemo versions 0.4.0 dated 2026-04-28 and 0.4.1 dated 2026-05-27
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS.md | 10 ++++++++++ man/aemo-package.Rd | 1 + tests/testthat/test-reference.R | 22 +++++++++++++++++++++- 5 files changed, 42 insertions(+), 11 deletions(-)
Title: Serology-Based Data Analysis and Visualization
Description: Data wrangling and cleaning, quality control checks and
implementation of machine learning classification algorithm.
Author: Dionne Argyropoulos [aut, cre]
Maintainer: Dionne Argyropoulos <argyropoulos.d@wehi.edu.au>
Diff between SeroTrackR versions 1.1.0 dated 2026-05-22 and 1.1.1 dated 2026-05-27
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/MFItoRAU.R | 2 +- R/readSeroData.R | 4 ++-- 5 files changed, 16 insertions(+), 10 deletions(-)
Title: Regression with Interval-Censored Covariates
Description: Provides functions to simulate and analyze data for a regression model with an interval censored covariate, as described in Morrison et al. (2021) <doi:10.1111/biom.13472>.
Author: Douglas Ezra Morrison [aut, cre, cph] ,
Ron Brookmeyer [aut]
Maintainer: Douglas Ezra Morrison <demorrison@ucdavis.edu>
This is a re-admission after prior archival of version 0.1.3 dated 2022-03-09
Diff between rwicc versions 0.1.3 dated 2022-03-09 and 0.2.0 dated 2026-05-27
DESCRIPTION | 26 LICENSE | 4 MD5 | 109 +- NAMESPACE | 117 +- NEWS.md | 39 R/build_event_date_possibilities_table.R |only R/build_omega_table.R |only R/check_pt_data.R |only R/filter_data_by_ID.R |only R/fit_joint_model.R | 1182 +++++++++++------------ R/fit_midpoint_model.R | 154 +-- R/fit_uniform_model.R | 187 +-- R/graph_S.R |only R/graph_omega.R |only R/graph_simulated_densities.R |only R/graph_simulated_hazards.R |only R/graph_simulated_survival_curves.R |only R/plot_CDF.R | 227 ++-- R/plot_censoring_data.R |only R/plot_phi_curves.R | 299 +++--- R/rwicc-package.R |only R/rwicc.R | 44 R/seroconversion_inverse_survival_function.R | 28 R/seroconversion_survival_function.R |only R/simulate_interval_censoring.R | 171 ++- R/standard_ggplot.R |only R/update_possible_subj_data.R |only R/utils.R | 37 README.md | 122 +- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 7 inst/doc/how-to-use-rwicc.R | 236 ++-- inst/doc/how-to-use-rwicc.Rmd | 395 ++++--- inst/doc/how-to-use-rwicc.html | 1188 +++++++++++++++--------- inst/doc/visualize-study-design.R |only inst/doc/visualize-study-design.Rmd |only inst/doc/visualize-study-design.html |only inst/extdata |only man/build_event_date_possibilities_table.Rd |only man/build_omega_table.Rd |only man/build_phi_function_from_coefs.Rd | 34 man/check_pt_data.Rd |only man/compute_mu.Rd | 36 man/filter_data_by_ID.Rd |only man/fit_joint_model.Rd | 247 ++-- man/fit_midpoint_model.Rd | 14 man/fit_uniform_model.Rd | 14 man/graph_S.Rd |only man/graph_omega.Rd |only man/graph_simulated_densities.Rd |only man/graph_simulated_hazards.Rd |only man/graph_simulated_survival_curves.Rd |only man/plot_CDF.Rd | 19 man/plot_censoring_data.Rd |only man/plot_phi_curves.Rd | 30 man/rwicc-package.Rd |only man/rwicc.Rd | 69 - man/seroconversion_cumhaz_function.Rd |only man/seroconversion_density_function.Rd |only man/seroconversion_hazard_function.Rd |only man/seroconversion_inverse_survival_function.Rd | 65 - man/seroconversion_survival_function.Rd |only man/simulate_interval_censoring.Rd | 180 +-- man/standard_ggplot.Rd |only man/update_possible_subj_data.Rd |only tests/testthat |only tests/testthat.R | 2 vignettes/how-to-use-rwicc.Rmd | 395 ++++--- vignettes/visualize-study-design.Rmd |only 70 files changed, 3132 insertions(+), 2545 deletions(-)
Title: R to Solr Interface
Description: A comprehensive R API for querying Apache Solr databases.
A Solr core is represented as a data frame or list that
supports Solr-side filtering, sorting,
transformation and aggregation, all through the familiar
base R API. Queries are processed
lazily, i.e., a query is only sent to the database when
the data are required.
Author: Michael Lawrence [aut, cre],
Gabe Becker [aut],
Jan Vogel [aut]
Maintainer: Michael Lawrence <lawremi@gmail.com>
Diff between rsolr versions 0.0.13 dated 2022-05-18 and 0.0.14 dated 2026-05-27
rsolr-0.0.13/rsolr/vignettes/auto |only rsolr-0.0.14/rsolr/DESCRIPTION | 18 +++++++++++++----- rsolr-0.0.14/rsolr/MD5 | 19 +++++++++---------- rsolr-0.0.14/rsolr/R/Solr-class.R | 3 ++- rsolr-0.0.14/rsolr/R/SolrQuery-class.R | 18 ++++++++++-------- rsolr-0.0.14/rsolr/build/vignette.rds |binary rsolr-0.0.14/rsolr/inst/doc/intro.R | 2 +- rsolr-0.0.14/rsolr/inst/doc/intro.Rnw | 2 +- rsolr-0.0.14/rsolr/inst/doc/intro.pdf |binary rsolr-0.0.14/rsolr/inst/unitTests/test_SolrQuery.R | 6 +++--- rsolr-0.0.14/rsolr/vignettes/intro.Rnw | 2 +- 11 files changed, 40 insertions(+), 30 deletions(-)
Title: Work with AppsFlyer API
Description: Loading data from AppsFlyer Pull API
<https://support.appsflyer.com/hc/en-us/articles/207034346-Pull-API-aggregate-data>.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rappsflyer versions 0.2.0 dated 2021-03-22 and 0.3.2 dated 2026-05-27
rappsflyer-0.2.0/rappsflyer/NEWS |only rappsflyer-0.2.0/rappsflyer/README |only rappsflyer-0.3.2/rappsflyer/DESCRIPTION | 20 rappsflyer-0.3.2/rappsflyer/MD5 | 44 - rappsflyer-0.3.2/rappsflyer/NEWS.md |only rappsflyer-0.3.2/rappsflyer/R/af_aggregate_daily_data.R | 26 - rappsflyer-0.3.2/rappsflyer/R/af_get_ad_revenue_raw_data.R | 8 rappsflyer-0.3.2/rappsflyer/R/af_get_aggregate_daily_data.R | 32 - rappsflyer-0.3.2/rappsflyer/R/af_get_data.R | 29 - rappsflyer-0.3.2/rappsflyer/R/af_get_raw_data.R | 8 rappsflyer-0.3.2/rappsflyer/R/af_get_targeting_validation_rules.R | 8 rappsflyer-0.3.2/rappsflyer/R/zzz.R | 2 rappsflyer-0.3.2/rappsflyer/README.md |only rappsflyer-0.3.2/rappsflyer/build/partial.rdb |binary rappsflyer-0.3.2/rappsflyer/build/vignette.rds |binary rappsflyer-0.3.2/rappsflyer/inst/doc/rappsflyer-intro.R | 2 rappsflyer-0.3.2/rappsflyer/inst/doc/rappsflyer-intro.Rmd | 12 rappsflyer-0.3.2/rappsflyer/inst/doc/rappsflyer-intro.html | 247 +++++----- rappsflyer-0.3.2/rappsflyer/man/af_get_ad_revenue_raw_data.Rd | 13 rappsflyer-0.3.2/rappsflyer/man/af_get_aggregate_data.Rd | 11 rappsflyer-0.3.2/rappsflyer/man/af_get_data.Rd | 13 rappsflyer-0.3.2/rappsflyer/man/af_get_raw_data.Rd | 13 rappsflyer-0.3.2/rappsflyer/man/af_get_targeting_validation_rules.Rd | 13 rappsflyer-0.3.2/rappsflyer/man/af_set_api_token.Rd | 7 rappsflyer-0.3.2/rappsflyer/vignettes/rappsflyer-intro.Rmd | 12 25 files changed, 265 insertions(+), 255 deletions(-)
Title: 'Opal' Data Repository Client and 'DataSHIELD' Utils
Description: Data integration Web application for biobanks by 'OBiBa'. 'Opal' is
the core database application for biobanks. Participant data, once
collected from any data source, must be integrated and stored in a central
data repository under a uniform model. 'Opal' is such a central repository.
It can import, process, validate, query, analyze, report, and export data.
'Opal' is typically used in a research center to analyze the data acquired at
assessment centres. Its ultimate purpose is to achieve seamless
data-sharing among biobanks. This 'Opal' client allows to interact with 'Opal'
web services and to perform operations on the R server side. 'DataSHIELD'
administration tools are also provided.
Author: Yannick Marcon [aut, cre] ,
Amadou Gaye [ctb] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between opalr versions 3.6.0 dated 2026-04-17 and 3.6.1 dated 2026-05-27
DESCRIPTION | 8 MD5 | 358 ++++++++++++++--------------- R/opal.admin.R | 176 +++++++------- R/opal.perm.R | 37 +- build/vignette.rds |binary inst/doc/datashield-admin.html | 4 inst/doc/opal-files.html | 4 inst/doc/opal-projects.html | 4 inst/doc/opal-rsession.html | 4 man/dsadmin.get_method.Rd | 40 +-- man/dsadmin.get_methods.Rd | 40 +-- man/dsadmin.get_options.Rd | 40 +-- man/dsadmin.install_github_package.Rd | 40 +-- man/dsadmin.install_local_package.Rd | 40 +-- man/dsadmin.install_package.Rd | 40 +-- man/dsadmin.installed_package.Rd | 40 +-- man/dsadmin.package_description.Rd | 40 +-- man/dsadmin.package_descriptions.Rd | 40 +-- man/dsadmin.profile.Rd | 24 - man/dsadmin.profile_access.Rd | 24 - man/dsadmin.profile_create.Rd | 24 - man/dsadmin.profile_delete.Rd | 24 - man/dsadmin.profile_enable.Rd | 24 - man/dsadmin.profile_exists.Rd | 24 - man/dsadmin.profile_init.Rd | 24 - man/dsadmin.profile_perm.Rd | 24 - man/dsadmin.profile_perm_add.Rd | 24 - man/dsadmin.profile_perm_delete.Rd | 24 - man/dsadmin.profile_rparser.Rd | 24 - man/dsadmin.profiles.Rd | 24 - man/dsadmin.publish_package.Rd | 40 +-- man/dsadmin.remove_package.Rd | 40 +-- man/dsadmin.rm_method.Rd | 40 +-- man/dsadmin.rm_methods.Rd | 40 +-- man/dsadmin.rm_option.Rd | 40 +-- man/dsadmin.rm_options.Rd | 40 +-- man/dsadmin.rm_package_methods.Rd | 40 +-- man/dsadmin.set_method.Rd | 40 +-- man/dsadmin.set_option.Rd | 40 +-- man/dsadmin.set_package_methods.Rd | 40 +-- man/dsadmin.unpublish_package.Rd | 40 +-- man/oadmin.install_bioconductor_package.Rd | 22 - man/oadmin.install_cran_package.Rd | 22 - man/oadmin.install_devtools.Rd | 22 - man/oadmin.install_github_package.Rd | 22 - man/oadmin.install_local_package.Rd | 22 - man/oadmin.install_package.Rd | 22 - man/oadmin.installed_devtools.Rd | 22 - man/oadmin.installed_package.Rd | 22 - man/oadmin.installed_packages.Rd | 22 - man/oadmin.package_description.Rd | 22 - man/oadmin.remove_package.Rd | 22 - man/oadmin.system_perm_add.Rd | 2 man/oadmin.user_add.Rd | 16 - man/oadmin.user_delete.Rd | 16 - man/oadmin.user_enable.Rd | 16 - man/oadmin.user_exists.Rd | 16 - man/oadmin.user_profile_delete.Rd | 16 - man/oadmin.user_profiles.Rd | 16 - man/oadmin.user_reset_password.Rd | 16 - man/oadmin.users.Rd | 16 - man/opal.annotate.Rd | 22 - man/opal.annotations.Rd | 22 - man/opal.assign.Rd | 12 man/opal.assign.data.Rd | 12 man/opal.assign.resource.Rd | 12 man/opal.assign.script.Rd | 12 man/opal.assign.table.Rd | 12 man/opal.assign.table.tibble.Rd | 12 man/opal.attribute_values.Rd | 22 - man/opal.command.Rd | 10 man/opal.command_result.Rd | 10 man/opal.command_rm.Rd | 10 man/opal.commands.Rd | 10 man/opal.commands_rm.Rd | 10 man/opal.datasource.Rd | 22 - man/opal.datasources.Rd | 22 - man/opal.delete.Rd | 8 man/opal.execute.Rd | 8 man/opal.execute.source.Rd | 8 man/opal.file.Rd | 26 +- man/opal.file_cp.Rd | 26 +- man/opal.file_download.Rd | 26 +- man/opal.file_info.Rd | 26 +- man/opal.file_ls.Rd | 26 +- man/opal.file_mkdir.Rd | 26 +- man/opal.file_mkdir_tmp.Rd | 26 +- man/opal.file_mv.Rd | 26 +- man/opal.file_read.Rd | 26 +- man/opal.file_rm.Rd | 26 +- man/opal.file_unzip.Rd | 26 +- man/opal.file_upload.Rd | 26 +- man/opal.file_write.Rd | 26 +- man/opal.get.Rd | 8 man/opal.load_package.Rd | 8 man/opal.login.Rd | 6 man/opal.logout.Rd | 6 man/opal.perms.Rd | 38 +-- man/opal.post.Rd | 8 man/opal.profiles.Rd | 6 man/opal.project.Rd | 12 man/opal.project_create.Rd | 12 man/opal.project_delete.Rd | 12 man/opal.project_exists.Rd | 12 man/opal.projects.Rd | 12 man/opal.projects_databases.Rd | 12 man/opal.put.Rd | 8 man/opal.resource.Rd | 26 +- man/opal.resource_create.Rd | 26 +- man/opal.resource_delete.Rd | 26 +- man/opal.resource_exists.Rd | 26 +- man/opal.resource_extension_create.Rd | 26 +- man/opal.resource_get.Rd | 26 +- man/opal.resource_perm.Rd | 26 +- man/opal.resource_perm_add.Rd | 26 +- man/opal.resource_perm_delete.Rd | 26 +- man/opal.resource_view_create.Rd | 36 +- man/opal.resource_view_reconnect.Rd | 36 +- man/opal.resources.Rd | 26 +- man/opal.resources_perm.Rd | 26 +- man/opal.resources_perm_add.Rd | 26 +- man/opal.resources_perm_delete.Rd | 26 +- man/opal.rm.Rd | 10 man/opal.session.Rd | 12 man/opal.session_delete.Rd | 12 man/opal.session_events.Rd | 12 man/opal.session_exists.Rd | 12 man/opal.session_get.Rd | 12 man/opal.session_running.Rd | 12 man/opal.symbol_import.Rd | 10 man/opal.symbol_rm.Rd | 10 man/opal.symbol_save.Rd | 10 man/opal.symbols.Rd | 10 man/opal.table.Rd | 22 - man/opal.table_create.Rd | 36 +- man/opal.table_delete.Rd | 36 +- man/opal.table_dictionary_get.Rd | 36 +- man/opal.table_dictionary_update.Rd | 36 +- man/opal.table_exists.Rd | 36 +- man/opal.table_export.Rd | 36 +- man/opal.table_get.Rd | 36 +- man/opal.table_import.Rd | 36 +- man/opal.table_perm.Rd | 36 +- man/opal.table_perm_add.Rd | 36 +- man/opal.table_perm_delete.Rd | 36 +- man/opal.table_save.Rd | 36 +- man/opal.table_truncate.Rd | 36 +- man/opal.table_view_create.Rd | 36 +- man/opal.table_view_update.Rd | 36 +- man/opal.tables.Rd | 22 - man/opal.task.Rd | 10 man/opal.task_cancel.Rd | 10 man/opal.task_delete.Rd | 10 man/opal.task_wait.Rd | 10 man/opal.tasks.Rd | 10 man/opal.taxonomies.Rd | 16 - man/opal.taxonomy.Rd | 16 - man/opal.taxonomy_delete.Rd | 16 - man/opal.taxonomy_download.Rd | 16 - man/opal.taxonomy_upload.Rd | 16 - man/opal.terms.Rd | 16 - man/opal.token.Rd | 14 - man/opal.token_datashield_create.Rd | 14 - man/opal.token_delete.Rd | 14 - man/opal.token_r_create.Rd | 14 - man/opal.token_renew.Rd | 14 - man/opal.token_sql_create.Rd | 14 - man/opal.tokens.Rd | 14 - man/opal.unload_package.Rd | 8 man/opal.valueset.Rd | 22 - man/opal.variable.Rd | 22 - man/opal.variable_summary.Rd | 22 - man/opal.variables.Rd | 22 - man/opal.vocabularies.Rd | 16 - man/opal.vocabulary.Rd | 16 - man/opal.workspace_restore.Rd | 8 man/opal.workspace_rm.Rd | 8 man/opal.workspace_save.Rd | 8 man/opal.workspaces.Rd | 8 man/opalr-package.Rd | 5 180 files changed, 2170 insertions(+), 2164 deletions(-)
Title: G-Wishart Normalising Constants for Gaussian Graphical Models
Description: Computes G-Wishart normalising constants through a Fourier approach. Either exact analytical results, numerical integration or Monte Carlo estimation are employed. Details at C. Wong, G. Moffa and J. Kuipers (2024), <doi:10.48550/arXiv.2404.06803>. Also includes approximations of the ratio of normalising constants, see details at C. Wong, G. Moffa and J. Kuipers (2025), <doi:10.48550/arXiv.2503.13046>.
Author: Ching Wong [aut],
Jack Kuipers [aut, cre]
Maintainer: Jack Kuipers <jack.kuipers@bsse.ethz.ch>
Diff between GWnorm versions 1.0 dated 2026-04-16 and 1.0.1 dated 2026-05-27
DESCRIPTION | 13 +++-- MD5 | 31 +++++++++---- NAMESPACE | 7 +++ R/I_Gapprox.R |only R/I_Gfns.R | 97 +++++++++++++++++++++++++++++++----------- R/I_Gnorm.R | 26 +++++++---- R/I_Gspecial.R |only R/Integrand_fns.R | 11 ++-- R/special_tests.R |only man/I_G_MC.Rd | 5 +- man/I_G_chordal.Rd | 13 ++++- man/I_G_complete.Rd | 6 +- man/I_G_ratio_approx.Rd |only man/I_G_ratio_approx_prime.Rd |only man/I_G_special.Rd |only man/I_Gnorm.Rd | 15 +++--- man/Iss_cmat.Rd |only man/Iss_mat.Rd |only man/form_triangle.Rd |only man/is_6_cycle.Rd |only man/is_k_partite.Rd |only src/compute_dets.cpp | 8 +-- 22 files changed, 161 insertions(+), 71 deletions(-)
Title: Download and Process Brazilian Education Data from INEP
Description: Download and process public education data from INEP (Instituto
Nacional de Estudos e Pesquisas Educacionais Anísio Teixeira). Provides
functions to access microdata from the School Census (Censo Escolar),
ENEM (Exame Nacional do Ensino Médio), SAEB (Sistema de Avaliação da
Educação Básica), Higher Education Census (Censo da Educação Superior),
ENADE (Exame Nacional de Desempenho dos Estudantes),
ENCCEJA (Exame Nacional para Certificação de Competências de Jovens e Adultos),
IDD (Indicador de Diferença entre os Desempenhos Observado e Esperado),
CPC (Conceito Preliminar de Curso),
IGC (Índice Geral de Cursos),
CAPES graduate education data,
FUNDEB (Fundo de Manutencao e Desenvolvimento da Educacao Basica),
IDEB (Índice de Desenvolvimento da Educação Básica),
and other educational datasets. Returns data in
tidy format ready for analysis. Data source: INEP Open Data Portal
<https://www.gov.br/inep/pt-br/acesso-a-informacao/dados-abertos>.
Author: Sidney da Silva Pereira Bissoli [aut, cre]
Maintainer: Sidney da Silva Pereira Bissoli <sbissoli76@gmail.com>
Diff between educabR versions 0.9.1 dated 2026-04-06 and 1.0.0 dated 2026-05-27
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Title: Automatic Toolkit for Construction, Optimization, Scoring and
Simulation of Forced-Choice Tests
Description: Forced-choice (FC) response has gained increasing popularity
and interest for its resistance to faking when well-designed (Cao &
Drasgow, 2019 <doi:10.1037/apl0000414>). To established well-designed
FC scales, typically each item within a block should measure different
trait and have similar level of social desirability (Zhang et al.,
2020 <doi:10.1177/1094428119836486>). Recent study also suggests the
importance of high inter-item agreement of social desirability between
items within a block (Pavlov et al., 2021
<doi:10.31234/osf.io/hmnrc>). In addition to this, FC developers may
also need to maximize factor loading differences (Brown &
Maydeu-Olivares, 2011 <doi:10.1177/0013164410375112>) or minimize item
location differences (Cao & Drasgow, 2019 <doi:10.1037/apl0000414>)
depending on scoring models. Decision of which items should be
assigned to the same block, also called as item pairing, is thus critical
to the quality of an FC test. Becau [...truncated...]
Author: Mengtong Li [cre, aut] ,
Tianjun Sun [aut] ,
Bo Zhang [aut]
Maintainer: Mengtong Li <mt_li@fudan.edu.cn>
Diff between autoFC versions 0.2.0.1010 dated 2026-04-29 and 1.0.0.1000 dated 2026-05-27
autoFC-0.2.0.1010/autoFC/R/build_TIRT_var_names.R |only autoFC-0.2.0.1010/autoFC/R/build_scale_with_blueprint.R |only autoFC-0.2.0.1010/autoFC/R/construct_blueprint.R |only autoFC-0.2.0.1010/autoFC/R/convert_to_TIRT_response.R |only autoFC-0.2.0.1010/autoFC/R/fit_TIRT_model.R |only autoFC-0.2.0.1010/autoFC/R/fit_TIRT_mplus_new.R |only autoFC-0.2.0.1010/autoFC/R/get_TIRT_long_data.R |only autoFC-0.2.0.1010/autoFC/R/make_mplus_code_new.R |only autoFC-0.2.0.1010/autoFC/R/predict_scores.R |only autoFC-0.2.0.1010/autoFC/R/sa_pairing_generalized.R |only autoFC-0.2.0.1010/autoFC/R/triplet_block_info.R |only autoFC-0.2.0.1010/autoFC/R/triplet_example_data.R |only autoFC-0.2.0.1010/autoFC/data/triplet_block_info.rda |only autoFC-0.2.0.1010/autoFC/data/triplet_example_data.rda |only autoFC-0.2.0.1010/autoFC/inst/CITATION |only autoFC-0.2.0.1010/autoFC/inst/doc/autoFC.R |only autoFC-0.2.0.1010/autoFC/inst/doc/autoFC.Rmd |only autoFC-0.2.0.1010/autoFC/inst/doc/autoFC.html |only 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autoFC-1.0.0.1000/autoFC/data/FC_blocks.rda |only autoFC-1.0.0.1000/autoFC/data/FC_item_info.rda |only autoFC-1.0.0.1000/autoFC/data/HEXACO_example_data.rda |binary autoFC-1.0.0.1000/autoFC/data/MOLE_data.rda |only autoFC-1.0.0.1000/autoFC/inst/doc/intro-to-autoFC.R |only autoFC-1.0.0.1000/autoFC/inst/doc/intro-to-autoFC.Rmd |only autoFC-1.0.0.1000/autoFC/inst/doc/intro-to-autoFC.html |only autoFC-1.0.0.1000/autoFC/inst/stan |only autoFC-1.0.0.1000/autoFC/man/FC_blocks.Rd |only autoFC-1.0.0.1000/autoFC/man/FC_item_info.Rd |only autoFC-1.0.0.1000/autoFC/man/HEXACO_example_data.Rd | 122 +++++-- autoFC-1.0.0.1000/autoFC/man/MOLE_data.Rd |only autoFC-1.0.0.1000/autoFC/man/RMSE_range.Rd | 71 ++-- autoFC-1.0.0.1000/autoFC/man/build_blueprint_blocks.Rd |only autoFC-1.0.0.1000/autoFC/man/build_target_dist.Rd |only autoFC-1.0.0.1000/autoFC/man/cal_block_energy.Rd | 104 +----- autoFC-1.0.0.1000/autoFC/man/cal_block_energy_with_iia.Rd | 151 ++------- 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autoFC-1.0.0.1000/autoFC/man/predict_tirt_stan.Rd |only autoFC-1.0.0.1000/autoFC/man/prepare_tirt_stan_data.Rd |only autoFC-1.0.0.1000/autoFC/man/score_tirt_ipsative.Rd |only autoFC-1.0.0.1000/autoFC/man/score_tirt_lavaan.Rd |only autoFC-1.0.0.1000/autoFC/man/score_tirt_mplus.Rd |only autoFC-1.0.0.1000/autoFC/man/score_tirt_stan.Rd |only autoFC-1.0.0.1000/autoFC/man/summarize_trait_pairs.Rd |only autoFC-1.0.0.1000/autoFC/vignettes/fit_FC_lavaan.rds |only autoFC-1.0.0.1000/autoFC/vignettes/fit_FC_stan.rds |only autoFC-1.0.0.1000/autoFC/vignettes/intro-to-autoFC.Rmd |only 114 files changed, 1310 insertions(+), 1568 deletions(-)
Title: Utility Functions and Development Tools for the Admiral Package
Family
Description: Utility functions to check data, variables and conditions for
functions used in 'admiral' and 'admiral' extension packages.
Additional utility helper functions to assist developers with
maintaining documentation, testing and general upkeep of 'admiral' and
'admiral' extension packages.
Author: Edoardo Mancini [aut, cre] ,
Stefan Bundfuss [aut] ,
Arianna Cascone [aut] ,
Jeffrey Dickinson [aut],
Ross Farrugia [aut],
Fanny Gautier [aut],
Gordon Miller [aut],
Daniel Sjoberg [aut] ,
Ben Straub [aut],
Stefan Thoma [aut] ,
F. Hoffmann-La Roche AG [...truncated...]
Maintainer: Edoardo Mancini <edoardo.mancini@roche.com>
Diff between admiraldev versions 1.4.0 dated 2026-01-14 and 1.4.1 dated 2026-05-27
DESCRIPTION | 19 ++++++++++--------- MD5 | 24 ++++++++++++------------ NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/package_extensions.Rmd | 2 +- inst/doc/package_extensions.html | 4 ++-- inst/doc/rcmd_issues.html | 5 +++-- inst/doc/writing_custom_examples.html | 5 +++-- man/admiraldev-package.Rd | 4 ++-- man/capture_output.Rd | 4 ++-- man/deprecate_inform.Rd | 13 ++++++++----- man/execute_example.Rd | 4 ++-- vignettes/package_extensions.Rmd | 2 +- 13 files changed, 50 insertions(+), 40 deletions(-)
Title: Accessibility Enhancements to Popular R Shiny Functions
Description: Accessible wrappers for popular 'shiny' UI components, enforcing
ARIA attributes and structural requirements in line with BITV 2.0
(Barrierefreie-Informationstechnik-Verordnung) and WCAG 2.1 AA.
Covers action buttons, text and select inputs, fluid page layouts with
HTML landmarks and skip links, 'DT' data tables, and bar and line
graphs from 'ggplot2'. Components validate label presence, expose
keyboard-accessible ARIA states, and provide a high-contrast toggle.
This package was developed by d-fine GmbH on behalf of the German
Federal Ministry of Research, Technology and Space (BMFTR).
Author: Jan Liebnitzky [aut, cre]
Maintainer: Jan Liebnitzky <datenlabor@bmftr.bund.de>
Diff between a11yShiny versions 0.1.3 dated 2026-03-30 and 0.1.4 dated 2026-05-27
DESCRIPTION | 6 +++--- MD5 | 4 ++-- build/vignette.rds |binary 3 files changed, 5 insertions(+), 5 deletions(-)
Title: Modeling and Forecasting Visitor Counts Using Social Media
Description: Performs modeling and forecasting of park visitor counts
using social media data and (partial) on-site visitor counts.
Specifically, the model is built based on an automatic decomposition
of the trend and seasonal components of the social media-based park visitor counts,
from which short-term forecasts of the visitor counts and percent changes
in the visitor counts can be made. A reference for the underlying model that 'VisitorCounts' uses can be found at
Russell Goebel, Austin Schmaltz, Beth Ann Brackett, Spencer A. Wood, Kimihiro Noguchi (2023) <doi:10.1002/for.2965> .
Author: Robert Bowen [aut, cre],
Russell Goebel [aut],
Beth Ann Brackett [ctb],
Kimihiro Noguchi [aut],
Dylan Way [aut]
Maintainer: Robert Bowen <robertbowen.bham@gmail.com>
Diff between VisitorCounts versions 2.0.3 dated 2025-01-15 and 2.0.4 dated 2026-05-27
DESCRIPTION | 10 +++++----- LICENSE |only MD5 | 13 +++++++------ NEWS.md | 4 ++++ inst/doc/VisitorCounts.R | 4 +++- inst/doc/VisitorCounts.Rmd | 4 +++- inst/doc/VisitorCounts.html | 29 +++++++++++++++-------------- vignettes/VisitorCounts.Rmd | 4 +++- 8 files changed, 40 insertions(+), 28 deletions(-)
Title: Venn Diagram
Description: Generate Venn plots, summary tables, and ellipse paths for polygon clipping.
Provides direct access to subsets of interest and offers flexible customization of Venn diagrams.
Summary tables are also available when Venn diagram visualization is not suitable.
Author: Joon-Keat Lai [aut, cre, cph]
Maintainer: Joon-Keat Lai <p10911004@gmail.com>
Diff between venny versions 0.0.2 dated 2026-05-21 and 0.0.3 dated 2026-05-27
DESCRIPTION | 10 +- MD5 | 32 ++++-- NAMESPACE | 2 NEWS.md | 10 +- R/params.R | 98 ++++++++++++++++++++- R/polyclip.R | 9 + R/utils.R | 5 - R/venny.R | 6 - README.md | 204 +++++++++++++++++++++++++++++++++++++++++--- man/figures |only man/highlight.Rd | 6 - man/set_label_default.Rd | 3 man/set_label_position.Rd | 3 man/venn_summary.Rd | 2 man/venny.Rd | 3 tests/testthat/test-venny.R |only 16 files changed, 346 insertions(+), 47 deletions(-)
Title: Estimation of the Weights Attached to the Two-Way Fixed Effects
Regressions
Description: Computes the implicit weights attached to two-way fixed effects regressions, as well as summary measures of these regressions' robustness to heterogeneous treatment effects. Based on de Chaisemartin and D'Haultfoeuille (2020) <DOI:10.1257/aer.20181169>.
Author: Anzony Quispe [aut, cre],
Diego Ciccia [aut],
Felix Knau [aut],
Melitine Malezieux [aut],
Doulo Sow [aut],
Shuo Zhang [aut],
Clement de Chaisemartin [aut],
Grant McDermott [ctb]
Maintainer: Anzony Quispe <anzony.quispe@gmail.com>
Diff between TwoWayFEWeights versions 2.0.4 dated 2024-07-26 and 2.1.0 dated 2026-05-27
DESCRIPTION | 32 +- LICENSE | 4 MD5 | 26 +- NAMESPACE | 38 +-- NEWS.md | 25 +- R/RcppExports.R |only R/twowayfeweights.R | 469 +++++++++++++++++++------------------- R/twowayfeweights_calculate.R | 425 +++++++++++++++++----------------- R/twowayfeweights_normalize_var.R | 59 ++-- R/twowayfeweights_result.R | 219 ++++++++--------- R/utils.R | 378 +++++++++++++++--------------- R/zzz.R |only man/print.twowayfeweights.Rd | 112 ++++----- man/twowayfeweights.Rd | 392 +++++++++++++++---------------- src |only 15 files changed, 1112 insertions(+), 1067 deletions(-)
More information about TwoWayFEWeights at CRAN
Permanent link
Title: Tipping Point Analysis for Bayesian Dynamic Borrowing
Description: Tipping point analysis for clinical trials that employ
Bayesian dynamic borrowing via robust meta-analytic predictive (MAP)
priors. Further functions facilitate expert elicitation of a primary
weight of the informative component of the robust MAP prior and
computation of operating characteristics. Intended use is the
planning, analysis and interpretation of extrapolation studies in
pediatric drug development, but applicability is generally wider.
Author: Christian Stock [aut, cre] ,
Morten Dreher [aut],
Lars Andersen [aut],
Emma Torrini [ctb],
Boehringer Ingelheim Pharma GmbH & Co. KG [cph, fnd]
Maintainer: Christian Stock <christian.stock@boehringer-ingelheim.com>
Diff between tipmap versions 0.5.2 dated 2023-08-14 and 1.0.0 dated 2026-05-27
DESCRIPTION | 64 MD5 | 142 NAMESPACE | 1 NEWS.md | 103 R/create_new_trial_data.R | 48 R/create_posterior_data.R | 190 - R/create_prior_data.R | 62 R/create_tipmap_data.R | 173 R/draw_beta_mixture_nsamples.R | 59 R/fit_beta_1exp.R | 70 R/fit_beta_mult_exp.R | 33 R/get_cum_probs_1exp.R | 17 R/get_model_input_1exp.R | 30 R/get_posterior_by_weight.R | 18 R/get_summary_mult_exp.R | 35 R/get_tipping_points.R | 115 R/load_tipmap_data.R | 9 R/oc_bias.R | 228 - R/oc_coverage.R | 233 - R/oc_pos.R | 266 - R/tipmap-package.R | 1 R/tipmap_plot.R | 676 +-- README.md | 266 - build/vignette.rds |binary inst/doc/expert_elicitation.R | 272 - inst/doc/expert_elicitation.Rmd | 440 +- inst/doc/expert_elicitation.html | 3684 ++++++++++---------- inst/doc/introduction.R | 380 +- inst/doc/introduction.Rmd | 685 +-- inst/doc/introduction.html | 4102 +++++++++++------------ man/create_new_trial_data.Rd | 60 man/create_posterior_data.Rd | 147 man/create_prior_data.Rd | 66 man/create_tipmap_data.Rd | 93 man/default_quantiles.Rd | 32 man/default_weights.Rd | 32 man/draw_beta_mixture_nsamples.Rd | 78 man/figures |only man/fit_beta_1exp.Rd | 60 man/fit_beta_mult_exp.Rd | 64 man/get_cum_probs_1exp.Rd | 54 man/get_model_input_1exp.Rd | 60 man/get_posterior_by_weight.Rd | 58 man/get_summary_mult_exp.Rd | 64 man/get_tipping_points.Rd | 60 man/load_tipmap_data.Rd | 48 man/oc_bias.Rd | 2 man/oc_coverage.Rd | 2 man/oc_pos.Rd | 4 man/tipmap-package.Rd | 4 man/tipmap_darkblue.Rd | 32 man/tipmap_lightred.Rd | 32 man/tipmap_plot.Rd | 116 tests/testthat.R | 24 tests/testthat/test-create_new_trial_data.R | 21 tests/testthat/test-create_posterior_data.R | 84 tests/testthat/test-create_prior_data.R | 31 tests/testthat/test-create_tipmap_data.R | 50 tests/testthat/test-draw_beta_mixture_nsamples.R | 56 tests/testthat/test-fit_beta_1exp.R | 16 tests/testthat/test-fit_beta_mult_exp.R |only tests/testthat/test-get_cum_probs_1exp.R | 16 tests/testthat/test-get_model_input_1exp.R | 23 tests/testthat/test-get_posterior_by_weight.R |only tests/testthat/test-get_summary_mult_exp.R | 61 tests/testthat/test-get_tipping_points.R | 40 tests/testthat/test-load_tipmap_data.R | 14 tests/testthat/test-oc_bias.R |only tests/testthat/test-oc_coverage.R |only tests/testthat/test-oc_pos.R |only tests/testthat/test-tipmap_plot.R | 279 + vignettes/expert_elicitation.Rmd | 440 +- vignettes/introduction.Rmd | 685 +-- vignettes/jrss_style.csl | 610 +-- vignettes/references.bib | 424 +- 75 files changed, 8651 insertions(+), 7793 deletions(-)
Title: Symbolic Central and Noncentral Moments of the Multivariate
Normal Distribution
Description: Symbolic central and non-central moments of the multivariate normal
distribution. Computes a standard representation, LateX code, and values at
specified mean and covariance matrices.
Author: Kem Phillips [aut],
Florian Schuberth [aut, cre]
Maintainer: Florian Schuberth <f.schuberth@utwente.nl>
Diff between symmoments versions 1.2.1.1 dated 2025-12-12 and 1.2.2 dated 2026-05-27
symmoments-1.2.1.1/symmoments/R/symmoments.R |only symmoments-1.2.1.1/symmoments/inst/doc/symmoments.R |only symmoments-1.2.1.1/symmoments/man/print.moment.rd |only symmoments-1.2.1.1/symmoments/man/tomatching.Rd |only symmoments-1.2.1.1/symmoments/man/tomoment.Rd |only symmoments-1.2.1.1/symmoments/vignettes/jss.dtx |only symmoments-1.2.1.1/symmoments/vignettes/jsslogo.jpg |only symmoments-1.2.1.1/symmoments/vignettes/moments.bib |only symmoments-1.2.2/symmoments/DESCRIPTION | 40 symmoments-1.2.2/symmoments/MD5 | 74 symmoments-1.2.2/symmoments/NAMESPACE | 55 symmoments-1.2.2/symmoments/NEWS.md |only symmoments-1.2.2/symmoments/R/callmultmoments.R |only symmoments-1.2.2/symmoments/R/convert.R |only symmoments-1.2.2/symmoments/R/evaluate.R |only symmoments-1.2.2/symmoments/R/integrate.polynomial.R |only symmoments-1.2.2/symmoments/R/make.all.moments.R |only symmoments-1.2.2/symmoments/R/multmoments.R |only symmoments-1.2.2/symmoments/R/print.moment.R |only symmoments-1.2.2/symmoments/R/simulate.moment.R |only symmoments-1.2.2/symmoments/R/symmoments-packageinternal.R |only symmoments-1.2.2/symmoments/R/toLatex.R |only symmoments-1.2.2/symmoments/R/toMatching.R |only symmoments-1.2.2/symmoments/R/toMoment.R |only symmoments-1.2.2/symmoments/R/toNewick.R |only symmoments-1.2.2/symmoments/R/tounsorted.R |only symmoments-1.2.2/symmoments/R/utils.R |only symmoments-1.2.2/symmoments/README.md |only symmoments-1.2.2/symmoments/build/partial.rdb |only symmoments-1.2.2/symmoments/build/vignette.rds |binary symmoments-1.2.2/symmoments/inst/REFERENCES.bib |only symmoments-1.2.2/symmoments/inst/doc/symmoments.pdf |binary symmoments-1.2.2/symmoments/inst/doc/symmoments.rnw | 1063 ---------- symmoments-1.2.2/symmoments/man/callmultmoments.Rd | 98 symmoments-1.2.2/symmoments/man/convert.mpoly.Rd | 92 symmoments-1.2.2/symmoments/man/convert.multipol.Rd | 102 symmoments-1.2.2/symmoments/man/evaluate.Rd |only symmoments-1.2.2/symmoments/man/evaluate.moment.Rd | 83 symmoments-1.2.2/symmoments/man/evaluate_expected.polynomial.Rd | 106 symmoments-1.2.2/symmoments/man/evaluate_noncentral.Rd | 106 symmoments-1.2.2/symmoments/man/integrate.polynomial.Rd | 120 - symmoments-1.2.2/symmoments/man/make.all.moments.Rd | 111 - symmoments-1.2.2/symmoments/man/multmoments.Rd | 73 symmoments-1.2.2/symmoments/man/print.moment.Rd |only symmoments-1.2.2/symmoments/man/simulate.moment.Rd | 84 symmoments-1.2.2/symmoments/man/symmoments-package.Rd | 319 +-- symmoments-1.2.2/symmoments/man/toLatex.moment.Rd | 67 symmoments-1.2.2/symmoments/man/toLatex_noncentral.Rd | 74 symmoments-1.2.2/symmoments/man/toMatching.Rd |only symmoments-1.2.2/symmoments/man/toMoment.Rd |only symmoments-1.2.2/symmoments/man/toNewick.Rd | 120 - symmoments-1.2.2/symmoments/man/tounsorted.Rd | 84 symmoments-1.2.2/symmoments/vignettes/Phillips2010.pdf |only symmoments-1.2.2/symmoments/vignettes/symmoments.rnw | 1063 ---------- 54 files changed, 1084 insertions(+), 2850 deletions(-)
Title: Assess Study Cohorts Using a Common Data Model
Description: Phenotype study cohorts in data mapped to the
Observational Medical Outcomes Partnership Common Data Model. Diagnostics
are run at the database, code list, cohort, and population level to assess
whether study cohorts are ready for research.
Author: Edward Burn [aut, cre] ,
Marti Catala [aut] ,
Xihang Chen [aut] ,
Marta Alcalde-Herraiz [aut] ,
Nuria Mercade-Besora [aut] ,
Albert Prats-Uribe [aut]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between PhenotypeR versions 0.4.0 dated 2026-04-16 and 0.5.0 dated 2026-05-27
PhenotypeR-0.4.0/PhenotypeR/R/getClinicalDescription.R |only PhenotypeR-0.4.0/PhenotypeR/man/getClinicalDescription.Rd |only PhenotypeR-0.5.0/PhenotypeR/DESCRIPTION | 10 PhenotypeR-0.5.0/PhenotypeR/MD5 | 94 +- PhenotypeR-0.5.0/PhenotypeR/NAMESPACE | 8 PhenotypeR-0.5.0/PhenotypeR/R/clinicalDescriptionSpecification.R |only PhenotypeR-0.5.0/PhenotypeR/R/codelistDiagnostics.R | 10 PhenotypeR-0.5.0/PhenotypeR/R/cohortDiagnostics.R | 108 +- PhenotypeR-0.5.0/PhenotypeR/R/dataSourceDescriptionSpecification.R |only PhenotypeR-0.5.0/PhenotypeR/R/databaseDiagnostics.R | 2 PhenotypeR-0.5.0/PhenotypeR/R/draftClinicalDescription.R |only PhenotypeR-0.5.0/PhenotypeR/R/shinyDescriptions.R |only PhenotypeR-0.5.0/PhenotypeR/R/shinyDiagnostics.R | 3 PhenotypeR-0.5.0/PhenotypeR/inst/clinical_description_shiny |only PhenotypeR-0.5.0/PhenotypeR/inst/data_source_description_shiny |only PhenotypeR-0.5.0/PhenotypeR/inst/doc/PhenotypeDiagnostics.R | 7 PhenotypeR-0.5.0/PhenotypeR/inst/doc/PhenotypeDiagnostics.Rmd | 59 - PhenotypeR-0.5.0/PhenotypeR/inst/doc/PhenotypeDiagnostics.html | 35 PhenotypeR-0.5.0/PhenotypeR/inst/shiny/global.R | 2 PhenotypeR-0.5.0/PhenotypeR/inst/shiny/scripts/functions.R | 57 + PhenotypeR-0.5.0/PhenotypeR/inst/shiny/scripts/preprocess.R | 189 +--- PhenotypeR-0.5.0/PhenotypeR/inst/shiny/server.R | 426 +++++++-- PhenotypeR-0.5.0/PhenotypeR/inst/shiny/ui.R | 459 ++++++++-- PhenotypeR-0.5.0/PhenotypeR/man/addCodelistAttribute.Rd | 8 PhenotypeR-0.5.0/PhenotypeR/man/clinicalDescriptionSpecification.Rd |only PhenotypeR-0.5.0/PhenotypeR/man/codelistDiagnostics.Rd | 36 PhenotypeR-0.5.0/PhenotypeR/man/cohortDiagnostics.Rd | 34 PhenotypeR-0.5.0/PhenotypeR/man/cohortDoc.Rd | 4 PhenotypeR-0.5.0/PhenotypeR/man/cohortSampleDoc.Rd | 6 PhenotypeR-0.5.0/PhenotypeR/man/dataSourceDescriptionSpecification.Rd |only PhenotypeR-0.5.0/PhenotypeR/man/databaseDiagnostics.Rd | 18 PhenotypeR-0.5.0/PhenotypeR/man/directoryDoc.Rd | 4 PhenotypeR-0.5.0/PhenotypeR/man/draftClinicalDescription.Rd |only PhenotypeR-0.5.0/PhenotypeR/man/drugDiagnosticsSampleDoc.Rd | 8 PhenotypeR-0.5.0/PhenotypeR/man/expectationsDoc.Rd | 4 PhenotypeR-0.5.0/PhenotypeR/man/importClinicalDescription.Rd |only PhenotypeR-0.5.0/PhenotypeR/man/importDatabaseDescription.Rd |only PhenotypeR-0.5.0/PhenotypeR/man/matchedDoc.Rd | 6 PhenotypeR-0.5.0/PhenotypeR/man/measurementDiagnosticsSampleDoc.Rd | 8 PhenotypeR-0.5.0/PhenotypeR/man/phenotypeDiagnostics.Rd | 34 PhenotypeR-0.5.0/PhenotypeR/man/populationDiagnostics.Rd | 11 PhenotypeR-0.5.0/PhenotypeR/man/populationSampleDoc.Rd | 4 PhenotypeR-0.5.0/PhenotypeR/man/resultDoc.Rd | 4 PhenotypeR-0.5.0/PhenotypeR/man/shinyClinicalDescriptions.Rd |only PhenotypeR-0.5.0/PhenotypeR/man/shinyDataSourceDescriptions.Rd |only PhenotypeR-0.5.0/PhenotypeR/man/shinyDiagnostics.Rd | 13 PhenotypeR-0.5.0/PhenotypeR/man/survivalDoc.Rd | 4 PhenotypeR-0.5.0/PhenotypeR/tests/testthat/test-codelistDiagnostics.R | 14 PhenotypeR-0.5.0/PhenotypeR/tests/testthat/test-cohortDiagnostics.R | 104 ++ PhenotypeR-0.5.0/PhenotypeR/tests/testthat/test-databaseDiagnostics.R | 12 PhenotypeR-0.5.0/PhenotypeR/tests/testthat/test-getClinicalDescription.R | 12 PhenotypeR-0.5.0/PhenotypeR/tests/testthat/test-phenotypeDiagnostics.R | 5 PhenotypeR-0.5.0/PhenotypeR/tests/testthat/test-shinyDescriptions.R |only PhenotypeR-0.5.0/PhenotypeR/vignettes/PhenotypeDiagnostics.Rmd | 59 - 54 files changed, 1327 insertions(+), 554 deletions(-)
Title: Optimal Project Prioritization
Description: A decision support tool for prioritizing conservation projects.
Prioritizations can be developed by maximizing expected feature richness,
expected phylogenetic diversity, the number of features that meet
persistence targets, or identifying a set of projects that meet persistence
targets for minimal cost. Constraints (e.g. lock in specific actions) and
feature weights can also be specified to further customize prioritizations.
After defining a project prioritization problem, solutions can be obtained
using exact algorithms, heuristic algorithms, or random processes. In
particular, it is recommended to install the 'Gurobi' optimizer (available
from <https://www.gurobi.com>) because it can identify optimal solutions
very quickly. The 'rcbc' R package (available at
<https://github.com/dirkschumacher/rcbc>) can also be used to generate
solutions using the CBC optimization software
(<https://github.com/coin-or/Cbc>). Finally, methods are provided for
comparing different pri [...truncated...]
Author: Jeffrey O Hanson [aut, cre] ,
Richard Schuster [aut] ,
Matthew Strimas-Mackey [aut] ,
Joseph R Bennett [aut]
Maintainer: Jeffrey O Hanson <jeffrey.hanson@uqconnect.edu.au>
Diff between oppr versions 1.0.5 dated 2025-06-27 and 1.1.0 dated 2026-05-27
oppr-1.0.5/oppr/R/ArrayParameter-proto.R |only oppr-1.0.5/oppr/R/Collection-proto.R |only oppr-1.0.5/oppr/R/Constraint-proto.R |only oppr-1.0.5/oppr/R/Decision-proto.R |only oppr-1.0.5/oppr/R/Id.R |only oppr-1.0.5/oppr/R/MiscParameter-proto.R |only oppr-1.0.5/oppr/R/Objective-proto.R |only oppr-1.0.5/oppr/R/OptimizationProblem-proto.R |only oppr-1.0.5/oppr/R/Parameter-proto.R |only oppr-1.0.5/oppr/R/Parameters-proto.R |only oppr-1.0.5/oppr/R/ProjectModifier-proto.R |only oppr-1.0.5/oppr/R/ProjectProblem-proto.R |only oppr-1.0.5/oppr/R/ScalarParameter-proto.R |only oppr-1.0.5/oppr/R/Solver-proto.R |only oppr-1.0.5/oppr/R/Target-proto.R |only oppr-1.0.5/oppr/R/Weight-proto.R |only oppr-1.0.5/oppr/R/add_locked_in_constraints.R |only oppr-1.0.5/oppr/R/add_locked_out_constraints.R |only oppr-1.0.5/oppr/R/add_manual_locked_constraints.R |only oppr-1.0.5/oppr/R/data.R |only oppr-1.0.5/oppr/R/magrittr-operators.R |only oppr-1.0.5/oppr/R/misc.R |only oppr-1.0.5/oppr/R/parameters.R |only oppr-1.0.5/oppr/R/plot_feature_persistence.R |only oppr-1.0.5/oppr/R/plot_phylo_persistence.R |only oppr-1.0.5/oppr/R/pproto.R |only oppr-1.0.5/oppr/man/ArrayParameter-class.Rd |only oppr-1.0.5/oppr/man/Collection-class.Rd |only oppr-1.0.5/oppr/man/MiscParameter-class.Rd |only oppr-1.0.5/oppr/man/OptimizationProblem-methods.Rd |only oppr-1.0.5/oppr/man/Parameter-class.Rd |only oppr-1.0.5/oppr/man/Parameters-class.Rd |only oppr-1.0.5/oppr/man/ScalarParameter-class.Rd |only oppr-1.0.5/oppr/man/add_locked_in_constraints.Rd |only oppr-1.0.5/oppr/man/add_locked_out_constraints.Rd |only oppr-1.0.5/oppr/man/add_lsymphony_solver.Rd |only oppr-1.0.5/oppr/man/add_manual_locked_constraints.Rd |only oppr-1.0.5/oppr/man/array_parameters.Rd |only oppr-1.0.5/oppr/man/as.Rd |only oppr-1.0.5/oppr/man/is.Rd |only oppr-1.0.5/oppr/man/matrix_parameters.Rd |only oppr-1.0.5/oppr/man/misc_parameter.Rd |only oppr-1.0.5/oppr/man/new_id.Rd |only oppr-1.0.5/oppr/man/parameters.Rd |only oppr-1.0.5/oppr/man/pipe.Rd |only oppr-1.0.5/oppr/man/plot_feature_persistence.Rd |only oppr-1.0.5/oppr/man/plot_phylo_persistence.Rd |only oppr-1.0.5/oppr/man/pproto.Rd |only oppr-1.0.5/oppr/man/print.Rd |only oppr-1.0.5/oppr/man/scalar_parameters.Rd |only oppr-1.0.5/oppr/man/tee.Rd |only oppr-1.0.5/oppr/src/rcpp_apply_locked_constraints.cpp |only oppr-1.0.5/oppr/tests/testthat/test_Id.R |only oppr-1.0.5/oppr/tests/testthat/test_add_locked_in_constraints.R |only oppr-1.0.5/oppr/tests/testthat/test_add_locked_out_constraints.R |only oppr-1.0.5/oppr/tests/testthat/test_decisions.R |only oppr-1.0.5/oppr/tests/testthat/test_parameters.R |only oppr-1.0.5/oppr/tests/testthat/test_plot_feature_persistence.R |only oppr-1.0.5/oppr/tests/testthat/test_plot_phylo_persistence.R |only oppr-1.0.5/oppr/tests/testthat/test_pproto.R |only oppr-1.0.5/oppr/tests/testthat/test_solvers.R |only oppr-1.1.0/oppr/DESCRIPTION | 102 - oppr-1.1.0/oppr/MD5 | 484 ++-- oppr-1.1.0/oppr/NAMESPACE | 92 oppr-1.1.0/oppr/NEWS.md | 51 oppr-1.1.0/oppr/R/Constraint-class.R |only oppr-1.1.0/oppr/R/Decision-class.R |only oppr-1.1.0/oppr/R/MultiObjApproach-class.R |only oppr-1.1.0/oppr/R/MultiObjProjectProblem-class.R |only oppr-1.1.0/oppr/R/Objective-class.R |only oppr-1.1.0/oppr/R/OptimizationProblem-class.R |only oppr-1.1.0/oppr/R/OptimizationProblem-methods.R | 325 --- oppr-1.1.0/oppr/R/ProjectModifier-class.R |only oppr-1.1.0/oppr/R/ProjectProblem-class.R |only oppr-1.1.0/oppr/R/RcppExports.R | 44 oppr-1.1.0/oppr/R/Solver-class.R |only oppr-1.1.0/oppr/R/Target-class.R |only oppr-1.1.0/oppr/R/Weight-class.R |only oppr-1.1.0/oppr/R/action_names.R | 47 oppr-1.1.0/oppr/R/add_abs_constraint_approach.R |only oppr-1.1.0/oppr/R/add_absolute_targets.R | 146 - oppr-1.1.0/oppr/R/add_binary_decisions.R | 64 oppr-1.1.0/oppr/R/add_cbc_solver.R |only oppr-1.1.0/oppr/R/add_default_solver.R | 88 oppr-1.1.0/oppr/R/add_default_weights.R |only oppr-1.1.0/oppr/R/add_feature_weights.R | 161 - oppr-1.1.0/oppr/R/add_gurobi_solver.R | 412 ++-- oppr-1.1.0/oppr/R/add_heuristic_solver.R | 389 ++- oppr-1.1.0/oppr/R/add_highs_solver.R |only oppr-1.1.0/oppr/R/add_locked_in_action_constraints.R |only oppr-1.1.0/oppr/R/add_locked_in_project_constraints.R |only oppr-1.1.0/oppr/R/add_locked_out_action_constraints.R |only oppr-1.1.0/oppr/R/add_locked_out_project_constraints.R |only oppr-1.1.0/oppr/R/add_lpsolveapi_solver.R | 269 +- oppr-1.1.0/oppr/R/add_lpsymphony_solver.R | 221 +- oppr-1.1.0/oppr/R/add_manual_locked_action_constraints.R |only oppr-1.1.0/oppr/R/add_manual_locked_project_constraints.R |only oppr-1.1.0/oppr/R/add_manual_targets.R | 278 +- oppr-1.1.0/oppr/R/add_max_phylo_div_objective.R | 397 ++-- oppr-1.1.0/oppr/R/add_max_richness_objective.R | 306 +-- oppr-1.1.0/oppr/R/add_max_targets_met_objective.R | 352 +-- oppr-1.1.0/oppr/R/add_max_wtd_sum_objective.R |only oppr-1.1.0/oppr/R/add_min_set_objective.R | 289 +- oppr-1.1.0/oppr/R/add_random_solver.R | 226 +- oppr-1.1.0/oppr/R/add_ref_point_approach.R |only oppr-1.1.0/oppr/R/add_relative_targets.R | 92 oppr-1.1.0/oppr/R/add_rsymphony_solver.R | 245 +- oppr-1.1.0/oppr/R/add_wtd_goal_approach.R |only oppr-1.1.0/oppr/R/approaches.R |only oppr-1.1.0/oppr/R/assertions.R |only oppr-1.1.0/oppr/R/branch_matrix.R | 21 oppr-1.1.0/oppr/R/compile.R | 170 + oppr-1.1.0/oppr/R/constraints.R | 83 oppr-1.1.0/oppr/R/decisions.R | 19 oppr-1.1.0/oppr/R/deprecated.R |only oppr-1.1.0/oppr/R/feature_names.R | 47 oppr-1.1.0/oppr/R/internal.R | 241 -- oppr-1.1.0/oppr/R/multi_compile.R |only oppr-1.1.0/oppr/R/multi_problem.R |only oppr-1.1.0/oppr/R/new_optimization_problem.R | 8 oppr-1.1.0/oppr/R/number_of_actions.R | 49 oppr-1.1.0/oppr/R/number_of_features.R | 49 oppr-1.1.0/oppr/R/number_of_problems.R |only oppr-1.1.0/oppr/R/number_of_projects.R | 49 oppr-1.1.0/oppr/R/objectives.R | 166 - oppr-1.1.0/oppr/R/package.R | 84 oppr-1.1.0/oppr/R/plot.R | 109 - oppr-1.1.0/oppr/R/plot_solution_barplot.R |only oppr-1.1.0/oppr/R/plot_solution_phylogram.R |only oppr-1.1.0/oppr/R/predefined_optimization_problem.R | 171 + oppr-1.1.0/oppr/R/print.R | 68 oppr-1.1.0/oppr/R/problem.R | 303 +-- oppr-1.1.0/oppr/R/problem_names.R |only oppr-1.1.0/oppr/R/project_cost_effectiveness.R | 132 - oppr-1.1.0/oppr/R/project_names.R | 47 oppr-1.1.0/oppr/R/rake_phylogeny.R | 29 oppr-1.1.0/oppr/R/rank_importance.R |only oppr-1.1.0/oppr/R/reexports.R |only oppr-1.1.0/oppr/R/replacement_costs.R | 106 - oppr-1.1.0/oppr/R/repr.R |only oppr-1.1.0/oppr/R/run_example.R |only oppr-1.1.0/oppr/R/show.R | 49 oppr-1.1.0/oppr/R/sim_data.R |only oppr-1.1.0/oppr/R/sim_multi_data.R |only oppr-1.1.0/oppr/R/simulate_multi_ppp_data.R |only oppr-1.1.0/oppr/R/simulate_ppp_data.R | 399 ++-- oppr-1.1.0/oppr/R/simulate_ptm_data.R | 411 ++-- oppr-1.1.0/oppr/R/solution_statistics.R | 228 +- oppr-1.1.0/oppr/R/solve.R | 210 +- oppr-1.1.0/oppr/R/solvers.R | 172 - oppr-1.1.0/oppr/R/star_phylogeny.R | 20 oppr-1.1.0/oppr/R/targets.R | 93 oppr-1.1.0/oppr/R/tbl_df.R | 48 oppr-1.1.0/oppr/R/waiver.R | 23 oppr-1.1.0/oppr/R/weights.R | 66 oppr-1.1.0/oppr/R/zzz.R | 5 oppr-1.1.0/oppr/README.md | 56 oppr-1.1.0/oppr/build/partial.rdb |only oppr-1.1.0/oppr/build/vignette.rds |binary oppr-1.1.0/oppr/data/sim_multi_actions.rda |only oppr-1.1.0/oppr/data/sim_multi_features.rda |only oppr-1.1.0/oppr/data/sim_multi_projects.rda |only oppr-1.1.0/oppr/data/sim_multi_tree.rda |only oppr-1.1.0/oppr/inst/doc/oppr.Rmd | 220 +- oppr-1.1.0/oppr/inst/doc/oppr.html | 863 ++++---- oppr-1.1.0/oppr/inst/extdata/simulate_multi_data.R |only oppr-1.1.0/oppr/man/Constraint-class.Rd | 66 oppr-1.1.0/oppr/man/Decision-class.Rd | 67 oppr-1.1.0/oppr/man/MultiObjApproach-class.Rd |only oppr-1.1.0/oppr/man/MultiObjProjectProblem-class.Rd |only oppr-1.1.0/oppr/man/Objective-class.Rd | 151 + oppr-1.1.0/oppr/man/OptimizationProblem-class.Rd | 531 ++++- oppr-1.1.0/oppr/man/ProjectModifier-class.Rd | 349 ++- oppr-1.1.0/oppr/man/ProjectProblem-class.Rd | 785 +++++--- oppr-1.1.0/oppr/man/Solver-class.Rd | 202 +- oppr-1.1.0/oppr/man/Target-class.Rd | 82 oppr-1.1.0/oppr/man/Weight-class.Rd | 82 oppr-1.1.0/oppr/man/action_names.Rd | 24 oppr-1.1.0/oppr/man/add_abs_constraint_approach.Rd |only oppr-1.1.0/oppr/man/add_absolute_targets.Rd | 103 - 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oppr-1.1.0/oppr/man/oppr-deprecated.Rd |only oppr-1.1.0/oppr/man/oppr.Rd | 57 oppr-1.1.0/oppr/man/plot.ProjectProblem.Rd | 60 oppr-1.1.0/oppr/man/plot_solution_barplot.Rd |only oppr-1.1.0/oppr/man/plot_solution_phylogram.Rd |only oppr-1.1.0/oppr/man/problem.Rd | 86 oppr-1.1.0/oppr/man/problem_names.Rd |only oppr-1.1.0/oppr/man/project_cost_effectiveness.Rd | 50 oppr-1.1.0/oppr/man/project_names.Rd | 24 oppr-1.1.0/oppr/man/rank_importance.Rd |only oppr-1.1.0/oppr/man/reexports.Rd |only oppr-1.1.0/oppr/man/replacement_costs.Rd | 58 oppr-1.1.0/oppr/man/roxygen |only oppr-1.1.0/oppr/man/run_example.Rd |only oppr-1.1.0/oppr/man/show.Rd | 11 oppr-1.1.0/oppr/man/sim_data.Rd | 119 - oppr-1.1.0/oppr/man/sim_multi_data.Rd |only oppr-1.1.0/oppr/man/simulate_multi_ppp_data.Rd |only oppr-1.1.0/oppr/man/simulate_ppp_data.Rd | 150 + oppr-1.1.0/oppr/man/simulate_ptm_data.Rd | 153 + oppr-1.1.0/oppr/man/solution_statistics.Rd | 80 oppr-1.1.0/oppr/man/solve.Rd | 93 oppr-1.1.0/oppr/man/solvers.Rd | 165 - oppr-1.1.0/oppr/man/targets.Rd | 57 oppr-1.1.0/oppr/man/tibble-methods.Rd | 10 oppr-1.1.0/oppr/man/weights.Rd | 65 oppr-1.1.0/oppr/src/RcppExports.cpp | 134 + oppr-1.1.0/oppr/src/functions.cpp | 80 oppr-1.1.0/oppr/src/init.c | 96 oppr-1.1.0/oppr/src/optimization_problem.cpp | 52 oppr-1.1.0/oppr/src/optimization_problem.h | 3 oppr-1.1.0/oppr/src/package.h | 5 oppr-1.1.0/oppr/src/rcpp_add_raw_data.cpp | 191 + oppr-1.1.0/oppr/src/rcpp_apply_decisions.cpp | 9 oppr-1.1.0/oppr/src/rcpp_apply_feature_weights.cpp | 20 oppr-1.1.0/oppr/src/rcpp_apply_locked_action_constraints.cpp |only oppr-1.1.0/oppr/src/rcpp_apply_locked_project_constraints.cpp |only oppr-1.1.0/oppr/src/rcpp_apply_max_phylo_div_objective.cpp | 61 oppr-1.1.0/oppr/src/rcpp_apply_max_targets_met_objective.cpp | 29 oppr-1.1.0/oppr/src/rcpp_apply_min_set_objective.cpp | 9 oppr-1.1.0/oppr/src/rcpp_compile_multi_obj_problem.cpp |only oppr-1.1.0/oppr/src/rcpp_convert_abs_constraint_approach.cpp |only oppr-1.1.0/oppr/src/rcpp_convert_pwlobj.cpp |only oppr-1.1.0/oppr/src/rcpp_convert_ref_point_method_step1.cpp |only oppr-1.1.0/oppr/src/rcpp_convert_ref_point_method_step2.cpp |only oppr-1.1.0/oppr/src/rcpp_convert_wtd_goal_method.cpp |only oppr-1.1.0/oppr/src/rcpp_evaluate.cpp | 14 oppr-1.1.0/oppr/src/rcpp_heuristic_solution.cpp | 2 oppr-1.1.0/oppr/src/rcpp_random_solution.cpp | 10 oppr-1.1.0/oppr/tests/testthat/helper_dual_wtd_sum_multi_compile.R |only oppr-1.1.0/oppr/tests/testthat/helper_functions.R | 248 -- oppr-1.1.0/oppr/tests/testthat/helper_max_phylo_div_mip_formulation.R |only oppr-1.1.0/oppr/tests/testthat/helper_max_richness_mip_formulation.R |only oppr-1.1.0/oppr/tests/testthat/helper_max_targets_met_mip_formulation.R |only oppr-1.1.0/oppr/tests/testthat/helper_max_wtd_sum_objective.R |only oppr-1.1.0/oppr/tests/testthat/helper_min_set_mip_formulation.R |only oppr-1.1.0/oppr/tests/testthat/test_OptimizationProblem.R | 60 oppr-1.1.0/oppr/tests/testthat/test_Waiver.R | 5 oppr-1.1.0/oppr/tests/testthat/test_add_abs_constraint_approach.R |only oppr-1.1.0/oppr/tests/testthat/test_add_absolute_targets.R | 60 oppr-1.1.0/oppr/tests/testthat/test_add_binary_decisions.R |only oppr-1.1.0/oppr/tests/testthat/test_add_cbc_solver.R |only oppr-1.1.0/oppr/tests/testthat/test_add_default_solver.R |only oppr-1.1.0/oppr/tests/testthat/test_add_feature_weights.R | 35 oppr-1.1.0/oppr/tests/testthat/test_add_gurobi_solver.R |only oppr-1.1.0/oppr/tests/testthat/test_add_heuristic_solver.R |only oppr-1.1.0/oppr/tests/testthat/test_add_highs_solver.R |only oppr-1.1.0/oppr/tests/testthat/test_add_locked_in_action_constraints.R |only oppr-1.1.0/oppr/tests/testthat/test_add_locked_in_project_constraints.R |only oppr-1.1.0/oppr/tests/testthat/test_add_locked_out_action_constraints.R |only oppr-1.1.0/oppr/tests/testthat/test_add_locked_out_project_constraints.R |only oppr-1.1.0/oppr/tests/testthat/test_add_lpsolveapi_solver.R |only oppr-1.1.0/oppr/tests/testthat/test_add_lpsymphony_solver.R |only oppr-1.1.0/oppr/tests/testthat/test_add_manual_locked_actions_constraints.R |only oppr-1.1.0/oppr/tests/testthat/test_add_manual_locked_project_constraints.R |only oppr-1.1.0/oppr/tests/testthat/test_add_manual_targets.R | 227 +- oppr-1.1.0/oppr/tests/testthat/test_add_max_phylo_div_objective.R | 826 ++------ oppr-1.1.0/oppr/tests/testthat/test_add_max_richness_objective.R | 973 +--------- oppr-1.1.0/oppr/tests/testthat/test_add_max_targets_met_objective.R | 700 +------ oppr-1.1.0/oppr/tests/testthat/test_add_max_wtd_sum_objective.R |only oppr-1.1.0/oppr/tests/testthat/test_add_min_set_objective.R | 488 ----- oppr-1.1.0/oppr/tests/testthat/test_add_random_solver.R | 534 +++-- oppr-1.1.0/oppr/tests/testthat/test_add_ref_point_approach.R |only oppr-1.1.0/oppr/tests/testthat/test_add_relative_targets.R | 74 oppr-1.1.0/oppr/tests/testthat/test_add_rsymphony_solver.R |only oppr-1.1.0/oppr/tests/testthat/test_as_Matrix.R | 18 oppr-1.1.0/oppr/tests/testthat/test_branch_matrix.R | 35 oppr-1.1.0/oppr/tests/testthat/test_citation.R | 4 oppr-1.1.0/oppr/tests/testthat/test_data.R | 66 oppr-1.1.0/oppr/tests/testthat/test_deprecated.R |only oppr-1.1.0/oppr/tests/testthat/test_internal_rcpp.R | 10 oppr-1.1.0/oppr/tests/testthat/test_multi_compile.R |only oppr-1.1.0/oppr/tests/testthat/test_multi_problem.R |only oppr-1.1.0/oppr/tests/testthat/test_plot.R | 149 - oppr-1.1.0/oppr/tests/testthat/test_plot_solution_barplot.R |only oppr-1.1.0/oppr/tests/testthat/test_plot_solution_phylogram.R |only oppr-1.1.0/oppr/tests/testthat/test_problem.R | 403 ++-- oppr-1.1.0/oppr/tests/testthat/test_project_cost_effectiveness.R | 119 - oppr-1.1.0/oppr/tests/testthat/test_rake_phylogeny.R | 8 oppr-1.1.0/oppr/tests/testthat/test_rank_importance.R |only oppr-1.1.0/oppr/tests/testthat/test_replacement_costs.R | 182 + oppr-1.1.0/oppr/tests/testthat/test_simulate_multi_ppp_data.R |only oppr-1.1.0/oppr/tests/testthat/test_simulate_ppp_data.R | 474 +++- oppr-1.1.0/oppr/tests/testthat/test_simulate_ptm_data.R | 519 +++-- oppr-1.1.0/oppr/tests/testthat/test_solution_statistics.R |only oppr-1.1.0/oppr/tests/testthat/test_star_phylogeny.R | 8 oppr-1.1.0/oppr/tests/testthat/test_wtd_goal_approach.R |only oppr-1.1.0/oppr/vignettes/oppr.Rmd | 220 +- 332 files changed, 12104 insertions(+), 10158 deletions(-)
Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Description: This model fitting tool incorporates cyclic coordinate descent and
majorization-minimization approaches to fit a variety of regression models
found in large-scale observational healthcare data. Implementations focus
on computational optimization and fine-scale parallelization to yield
efficient inference in massive datasets. Please see:
Suchard, Simpson, Zorych, Ryan and Madigan (2013) <doi:10.1145/2414416.2414791>.
Author: Marc A. Suchard [aut, cre],
Martijn J. Schuemie [aut],
Trevor R. Shaddox [aut],
Yuxi Tian [aut],
Jianxiao Yang [aut],
Eric Kawaguchi [aut],
Sushil Mittal [ctb],
Observational Health Data Sciences and Informatics [cph],
Marcus Geelnard [cph, ctb] ,
Ru [...truncated...]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between Cyclops versions 3.7.0 dated 2026-02-28 and 3.7.1 dated 2026-05-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 7 +++++++ tests/testthat/test-bootstrap.R | 4 ++-- 4 files changed, 15 insertions(+), 8 deletions(-)
Title: Execute Pharmacometric Models Using 'shiny'
Description: Execute Nonlinear Mixed Effects (NLME) models for pharmacometrics using a 'shiny'
interface. Specify engine parameters and select from different run options, including
simple estimation, stepwise covariate search, bootstrapping, simulation, visual predictive
check, and more. Models are executed using the 'Certara.RsNLME' package.
Author: James Craig [aut, cre],
Mike Talley [aut],
Vitalii Nazarov [aut],
Certara USA, Inc [cph, fnd]
Maintainer: James Craig <james.craig@certara.com>
Diff between Certara.RsNLME.ModelExecutor versions 3.0.2 dated 2025-03-19 and 3.1.0 dated 2026-05-27
DESCRIPTION | 8 +- MD5 | 11 +- R/app_styling.R | 61 ++++++++++------ R/generate_ui.R | 26 ++---- R/modelExecutorUI.R | 21 +++-- R/tables.R | 197 +++++++++++++++++++++++++++++++++++++++++++++++++++- inst/www |only 7 files changed, 269 insertions(+), 55 deletions(-)
More information about Certara.RsNLME.ModelExecutor at CRAN
Permanent link
Title: Bayesian Seemingly Unrelated Regression Models in
High-Dimensional Settings
Description: Bayesian seemingly unrelated regression with general variable selection and dense/sparse covariance matrix. The sparse seemingly unrelated regression is described in Bottolo et al. (2021) <doi:10.1111/rssc.12490>, the software paper is in Zhao et al. (2021) <doi:10.18637/jss.v100.i11>, and the model with random effects is described in Zhao et al. (2024) <doi:10.1093/jrsssc/qlad102>.
Author: Marco Banterle [aut],
Zhi Zhao [aut, cre],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb],
Waldir Leoncio [ctb],
Alex Lewin [aut],
Manuela Zucknick [aut]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between BayesSUR versions 2.3-2 dated 2026-05-15 and 2.3-3 dated 2026-05-27
BayesSUR-2.3-2/BayesSUR/src/pugiconfig.hpp |only BayesSUR-2.3-2/BayesSUR/src/pugixml.cpp |only BayesSUR-2.3-2/BayesSUR/src/pugixml.hpp |only BayesSUR-2.3-3/BayesSUR/DESCRIPTION | 10 +++--- BayesSUR-2.3-3/BayesSUR/MD5 | 27 +++++++--------- BayesSUR-2.3-3/BayesSUR/NAMESPACE | 2 - BayesSUR-2.3-3/BayesSUR/NEWS.md | 4 ++ BayesSUR-2.3-3/BayesSUR/R/BayesSUR.R | 30 ++++++++++-------- BayesSUR-2.3-3/BayesSUR/R/RcppExports.R | 4 +- BayesSUR-2.3-3/BayesSUR/inst/doc/BayesSUR.pdf |binary BayesSUR-2.3-3/BayesSUR/src/BayesSUR.cpp | 14 ++++++-- BayesSUR-2.3-3/BayesSUR/src/RcppExports.cpp | 8 ++-- BayesSUR-2.3-3/BayesSUR/src/drive.cpp | 42 +++++++++++++++++++------- BayesSUR-2.3-3/BayesSUR/src/drive.h | 4 +- BayesSUR-2.3-3/BayesSUR/src/utils.cpp | 2 + BayesSUR-2.3-3/BayesSUR/src/utils.h | 3 - 16 files changed, 90 insertions(+), 60 deletions(-)
Title: Access Data from the Atlas do Estado Brasileiro
Description: Facilitates access to the data from the Atlas do Estado Brasileiro
(<https://www.ipea.gov.br/atlasestado/>), maintained by the Instituto de
Pesquisa Econômica Aplicada (Ipea). It allows users to search for specific
series, list series or themes, and download data when available.
Author: Hugo Macedo [aut, cre, cph]
Maintainer: Hugo Macedo <aebdata@hhmace.do>
This is a re-admission after prior archival of version 0.1.5 dated 2026-05-16
Diff between aebdata versions 0.1.5 dated 2026-05-16 and 0.1.6 dated 2026-05-27
DESCRIPTION | 8 +- MD5 | 10 +- NEWS.md | 2 R/get.R | 205 ++++++++++++++++++++++++++--------------------------- R/list.R | 33 ++++---- build/vignette.rds |binary 6 files changed, 132 insertions(+), 126 deletions(-)
Title: Multiple Grubbs-Beck Low-Outlier Test
Description: Compute the multiple Grubbs-Beck low-outlier test on positively distributed
data and utilities for noninterpretive U.S. Geological Survey annual peak-streamflow
data processing discussed in Cohn et al. (2013) and
England et al. (2017) <doi:10.3133/tm4B5>. Other utilities for working with peak streamflow
are provided.
Author: William H. Asquith [aut, cre] ,
John F. England [aut, ctb] ,
George R. Herrmann [ctb]
Maintainer: William H. Asquith <wasquith@usgs.gov>
Diff between MGBT versions 1.0.7 dated 2021-07-21 and 1.1.6 dated 2026-05-27
MGBT-1.0.7/MGBT/README.md |only MGBT-1.0.7/MGBT/inst/README.md |only MGBT-1.0.7/MGBT/inst/helpers/README.md |only MGBT-1.0.7/MGBT/inst/legend/README.md |only MGBT-1.0.7/MGBT/inst/sources/README.md |only MGBT-1.0.7/MGBT/inst/www/README.md |only MGBT-1.1.6/MGBT/DESCRIPTION | 32 ++- MGBT-1.1.6/MGBT/MD5 | 76 +++---- MGBT-1.1.6/MGBT/NAMESPACE | 10 MGBT-1.1.6/MGBT/NEWS | 281 ++++++++++++++++++---------- MGBT-1.1.6/MGBT/R/jointPeaks.R |only MGBT-1.1.6/MGBT/R/makeWaterYear.R | 58 ++++- MGBT-1.1.6/MGBT/R/peakTMtoHRS.R |only MGBT-1.1.6/MGBT/R/plotPeaks.R | 46 +++- MGBT-1.1.6/MGBT/R/ratioPeakMax1Day.R |only MGBT-1.1.6/MGBT/R/readNWISwatstore.R | 39 ++- MGBT-1.1.6/MGBT/R/splitPeakCodes.R | 11 - MGBT-1.1.6/MGBT/build/partial.rdb |binary MGBT-1.1.6/MGBT/inst/CITATION | 7 MGBT-1.1.6/MGBT/man/ASlo.Rd | 4 MGBT-1.1.6/MGBT/man/BLlo.Rd | 2 MGBT-1.1.6/MGBT/man/CondMomsChi2.Rd | 2 MGBT-1.1.6/MGBT/man/CondMomsZ.Rd | 4 MGBT-1.1.6/MGBT/man/CritK.Rd | 2 MGBT-1.1.6/MGBT/man/EMS.Rd | 6 MGBT-1.1.6/MGBT/man/GGBK.Rd | 2 MGBT-1.1.6/MGBT/man/MGBT-package.Rd | 2 MGBT-1.1.6/MGBT/man/MGBT.Rd | 10 MGBT-1.1.6/MGBT/man/RSlo.Rd | 2 MGBT-1.1.6/MGBT/man/RthOrderPValueOrthoT.Rd | 4 MGBT-1.1.6/MGBT/man/V.Rd | 4 MGBT-1.1.6/MGBT/man/VMS.Rd | 4 MGBT-1.1.6/MGBT/man/critK10.Rd | 4 MGBT-1.1.6/MGBT/man/figures |only MGBT-1.1.6/MGBT/man/gtmoms.Rd | 6 MGBT-1.1.6/MGBT/man/jointPeaks.Rd |only MGBT-1.1.6/MGBT/man/makeWaterYear.Rd | 27 +- MGBT-1.1.6/MGBT/man/peakTMtoHRS.Rd |only MGBT-1.1.6/MGBT/man/peta.Rd | 2 MGBT-1.1.6/MGBT/man/plotFFQevol.Rd | 16 - MGBT-1.1.6/MGBT/man/plotPeaks.Rd | 45 +++- MGBT-1.1.6/MGBT/man/plotPeaks_batch.Rd | 8 MGBT-1.1.6/MGBT/man/ratioPeakMax1Day.Rd |only MGBT-1.1.6/MGBT/man/readNWISwatstore.Rd | 47 +++- MGBT-1.1.6/MGBT/man/splitPeakCodes.Rd | 59 +++++ 45 files changed, 565 insertions(+), 257 deletions(-)
Title: Differentiating Through Cone Programs
Description: A port of the 'python' 'diffcp' package. Computes the
derivative of the optimal solution map of a convex cone program,
treating the program as an implicit function of its data
(constraint matrix, offset, objective coefficients, and optionally
a quadratic), mirroring Agrawal et al. (2019)
<doi:10.48550/arXiv.1904.09043>.
Author: Balasubramanian Narasimhan [aut, cre],
Akshay Agrawal [aut],
Shane Barratt [aut],
Stephen Boyd [aut],
Enzo Busseti [aut],
Walaa Moursi [aut]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between diffcp versions 0.1.0 dated 2026-05-19 and 0.1.1 dated 2026-05-27
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ inst/doc/diffcp.Rmd | 8 ++++---- inst/doc/diffcp.html | 16 ++++++++-------- tests/testthat/test-canonical.R | 12 ++++++++---- tests/testthat/test-cone-diff.R | 2 +- vignettes/diffcp.Rmd | 8 ++++---- 8 files changed, 43 insertions(+), 33 deletions(-)
Title: Clean and Simple Argument Checking
Description: Checks function arguments, ideally for use in R packages. Uses a simple interface and produces clean, informative error messages using 'cli'.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between arg versions 0.1.0 dated 2026-04-09 and 0.1.1 dated 2026-05-27
DESCRIPTION | 8 +-- MD5 | 66 +++++++++++++-------------- NEWS.md | 19 +++++++ R/arg_between.R | 46 +++++++++---------- R/arg_character.R | 23 +++++++-- R/arg_data.R | 69 +++++++++++++++++++++++----- R/arg_dots_supplied.R | 14 +++++ R/arg_element.R | 44 +++++++++++++++--- R/arg_equal.R | 20 ++++++-- R/arg_formula.R | 25 ++++++---- R/arg_function.R | 7 ++ R/arg_index.R | 69 ++++++++++++++++++---------- R/arg_is.R | 26 ++++++++-- R/arg_length.R | 10 +++- R/arg_logical.R | 24 +++++++--- R/arg_named.R | 14 +++++ R/arg_no_NA.R | 27 +++++++---- R/arg_non_null.R | 14 +++++ R/arg_numeric.R | 82 ++++++++++++++++++++++------------ R/arg_or.R | 66 ++++++++++++++++----------- R/arg_supplied.R | 6 +- R/arg_symmetric.R | 119 ++++++++++++++++++++++++++++++++++++-------------- R/arg_unique.R | 7 ++ R/err.R | 64 ++++++++++++++++++-------- R/failures.R | 20 ++++---- R/match_arg.R | 24 ++++++---- R/utils.R | 43 +++++++++++++----- R/when_supplied.R | 52 +++++++++++++-------- README.md | 8 ++- man/arg-package.Rd | 5 ++ man/arg_character.Rd | 2 man/arg_logical.Rd | 2 man/arg_supplied.Rd | 2 man/err.Rd | 18 ++++--- 34 files changed, 716 insertions(+), 329 deletions(-)