Title: Partitioning Uncertainty Components of an Incomplete Ensemble of
Climate Projections
Description: These functions apply an analysis of variance to incomplete ensembles of climate projections.
It provides estimates of climate change responses of all simulation chains and of all uncertainty
variables. It has been applied to different ensembles of projections simulated to study the impact of climate change:
for climate indicators in Evin et al. (2019) <doi:10.1175/JCLI-D-18-0606.1>; seasonal precipitation
and temperature in Evin, Somot and Hingray (2021) <doi:10.5194/esd-12-1543-2021>; hydrological variables
in Evin et al. (2026) <doi:10.5194/hess-30-1023-2026>; photovoltaic energy in Bichet et al. (2019)
<doi:10.1088/1748-9326/ab500a>.
Author: Guillaume Evin [aut, cre]
Maintainer: Guillaume Evin <guillaume.evin@inrae.fr>
Diff between QUALYPSO versions 3.0 dated 2026-05-12 and 3.1 dated 2026-05-28
DESCRIPTION | 17 +++-- MD5 | 16 ++--- R/QUALYPSO.r | 112 +++++++++++++++++++++---------------- README.md | 11 ++- man/QUALYPSO.Rd | 49 +++++++++------- man/checkTypeandDimension.Rd | 2 man/fit.climate.response.Rd | 2 man/plotQUALYPSOclimateResponse.Rd | 3 man/plotQUALYPSOinternalvar.Rd | 3 9 files changed, 128 insertions(+), 87 deletions(-)
Title: Species Distribution Modeling with H3 Grids
Description: Provides tools for species distribution modeling using H3
hexagonal grids (Uber Technologies Inc., 2022, <https://h3geo.org>).
Facilitates retrieval of species occurrence records, generation of H3 grids,
computation of landscape metrics, and preparation of spatial data for modern
species distribution models workflows. Designed for biodiversity and landscape ecology research.
Author: Manuel Spinola [aut, cre]
Maintainer: Manuel Spinola <mspinola10@gmail.com>
Diff between h3sdm versions 0.1.2 dated 2026-05-22 and 0.1.3 dated 2026-05-28
DESCRIPTION | 10 +++++----- MD5 | 16 +++++++++------- NAMESPACE | 7 +++++++ NEWS.md | 16 ++++++++++++++++ R/h3sdm_aoa.R |only R/h3sdm_get_grid.R | 9 ++++++++- R/h3sdm_predict.R | 17 +++++++++-------- inst/doc/h3sdm.html | 32 ++++++++++++++++---------------- man/h3sdm_aoa.Rd |only man/h3sdm_predict.Rd | 3 +++ 10 files changed, 73 insertions(+), 37 deletions(-)
Title: Fechnerian Scaling of Discrete Object Sets
Description: Functions and example datasets for Fechnerian scaling of discrete
object sets. User can compute Fechnerian distances among objects representing
subjective dissimilarities, and other related information. See
package?fechner for an overview.
Author: Ali Uenlue [aut, cre],
Thomas Kiefer [aut, trl]
Maintainer: Ali Uenlue <aligalibuenlue@gmail.com>
This is a re-admission after prior archival of version 1.0-3 dated 2016-06-06
Diff between fechner versions 1.0-3 dated 2016-06-06 and 1.0-4 dated 2026-05-28
DESCRIPTION | 20 ++++++++--------- MD5 | 45 ++++++++++++++++++++------------------- NAMESPACE | 2 - NEWS | 7 ++++++ inst/CITATION | 37 +++++++++++++++++--------------- inst/doc/fechner.pdf |binary inst/doc/sourcefiles/fechner.bib | 14 ++++++------ inst/doc/sourcefiles/fechner.tex | 7 ++---- inst/doc/sourcefiles/fig3.pdf |binary inst/doc/sourcefiles/jss.bst |only inst/doc/sourcefiles/jss.cls |only man/check.data.Rd | 6 ++--- man/check.regular.Rd | 16 ++++++------- man/fechner-package.Rd | 8 +++--- man/fechner.Rd | 16 ++++++------- man/morse.Rd | 10 ++++---- man/noRegMin.Rd | 6 ++--- man/plot.fechner.Rd | 4 +-- man/print.fechner.Rd | 4 +-- man/print.summary.fechner.Rd | 4 +-- man/regMin.Rd | 4 +-- man/summary.fechner.Rd | 4 +-- man/wish.Rd | 12 +++++----- src/fechner.c | 2 - src/fechner_init.c |only 25 files changed, 120 insertions(+), 108 deletions(-)
Title: AI Agent Runtime
Description: An agent runtime that gives Large Language Models (LLMs)
from 'Anthropic' <https://www.anthropic.com/>, 'OpenAI'
<https://openai.com/>, 'Moonshot' <https://www.moonshot.ai/>, and
'Ollama' <https://ollama.com/> direct access to a live R session with
managed workspace state. Tools execute as R function calls with
provenance tracking, and a deterministic retrieval system keeps
relevant objects in context across turns. Three entry points: a
shell command-line interface (CLI), a console read-eval-print-loop
via chat(), and a Model Context Protocol (MCP) server via serve()
for external clients.
Author: Troy Hernandez [aut, cre] ,
Grant McDermott [ctb] ,
Jorge Krzyzaniak [ctb],
cornball.ai [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between corteza versions 0.6.3 dated 2026-05-04 and 0.6.9 dated 2026-05-28
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corteza-0.6.9/corteza/R/chunk.R | 19 corteza-0.6.9/corteza/R/cli-colors.R |only corteza-0.6.9/corteza/R/cli-helpers.R |only corteza-0.6.9/corteza/R/cli-ui.R | 570 ++- corteza-0.6.9/corteza/R/compact-turn.R |only corteza-0.6.9/corteza/R/config.R | 180 corteza-0.6.9/corteza/R/context-budget.R |only corteza-0.6.9/corteza/R/context-engine.R | 66 corteza-0.6.9/corteza/R/context-meter.R |only corteza-0.6.9/corteza/R/context.R | 68 corteza-0.6.9/corteza/R/deny.R |only corteza-0.6.9/corteza/R/diff-render.R |only corteza-0.6.9/corteza/R/dispatch.R | 170 corteza-0.6.9/corteza/R/format-elapsed.R |only corteza-0.6.9/corteza/R/handles.R | 123 corteza-0.6.9/corteza/R/heartbeat.R | 20 corteza-0.6.9/corteza/R/interrupt.R |only corteza-0.6.9/corteza/R/log.R | 36 corteza-0.6.9/corteza/R/matrix.R | 324 + corteza-0.6.9/corteza/R/mcp-handler.R | 105 corteza-0.6.9/corteza/R/mcp-transport.R | 10 corteza-0.6.9/corteza/R/package-tools.R | 24 corteza-0.6.9/corteza/R/permissions.R | 10 corteza-0.6.9/corteza/R/plan-mode.R |only corteza-0.6.9/corteza/R/policy.R | 140 corteza-0.6.9/corteza/R/rate-limit.R | 16 corteza-0.6.9/corteza/R/registry.R | 7 corteza-0.6.9/corteza/R/render-md-ansi.R |only corteza-0.6.9/corteza/R/repl.R |only corteza-0.6.9/corteza/R/retrieval.R | 21 corteza-0.6.9/corteza/R/rstudio-addin.R |only corteza-0.6.9/corteza/R/schema.R | 154 corteza-0.6.9/corteza/R/serve.R | 29 corteza-0.6.9/corteza/R/session.R | 192 - corteza-0.6.9/corteza/R/session_setup.R | 14 corteza-0.6.9/corteza/R/skill.R | 121 corteza-0.6.9/corteza/R/spend.R |only corteza-0.6.9/corteza/R/subagent.R | 1059 ++++- corteza-0.6.9/corteza/R/tasks.R |only corteza-0.6.9/corteza/R/tool-buffer.R |only corteza-0.6.9/corteza/R/tool-impl.R | 288 + corteza-0.6.9/corteza/R/tool-output-cap.R |only corteza-0.6.9/corteza/R/tools.R | 40 corteza-0.6.9/corteza/R/turn.R | 223 - corteza-0.6.9/corteza/R/utils.R | 27 corteza-0.6.9/corteza/R/workspace.R | 38 corteza-0.6.9/corteza/build/partial.rdb |only 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corteza-0.6.9/corteza/inst/tinytest/test_archival_persist.R |only corteza-0.6.9/corteza/inst/tinytest/test_archival_render.R |only corteza-0.6.9/corteza/inst/tinytest/test_archival_seed_history.R |only corteza-0.6.9/corteza/inst/tinytest/test_archival_summarize.R |only corteza-0.6.9/corteza/inst/tinytest/test_archival_triggers.R |only corteza-0.6.9/corteza/inst/tinytest/test_bang_shell.R |only corteza-0.6.9/corteza/inst/tinytest/test_banner.R |only corteza-0.6.9/corteza/inst/tinytest/test_chat_slash_helpers.R |only corteza-0.6.9/corteza/inst/tinytest/test_chunk.R | 7 corteza-0.6.9/corteza/inst/tinytest/test_cli_helpers.R |only corteza-0.6.9/corteza/inst/tinytest/test_cli_ui.R | 385 +- corteza-0.6.9/corteza/inst/tinytest/test_cli_unified_registry.R |only corteza-0.6.9/corteza/inst/tinytest/test_compact_turn.R |only corteza-0.6.9/corteza/inst/tinytest/test_config.R | 9 corteza-0.6.9/corteza/inst/tinytest/test_context.R | 17 corteza-0.6.9/corteza/inst/tinytest/test_context_budget.R |only 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Title: Tidy Tools for Actuarial Mathematics and Life Contingencies
Description: Provides tidyverse-aligned tools for actuarial mathematics
and life contingencies, including life tables, survival probabilities,
actuarial present values of cash flows, life annuities, life insurance,
premiums, reserves, multiple-life calculations, Monte Carlo simulation,
and deterministic cash-flow diagrams. The package emphasizes clear
actuarial notation, reproducible workflows, and pipe-friendly tools for
actuarial education and applied actuarial analysis.
Author: Julian Fajardo [aut, cre]
Maintainer: Julian Fajardo <julian.fajardo1908@gmail.com>
Diff between tidyactuarial versions 0.1.2 dated 2026-05-17 and 0.1.3 dated 2026-05-28
tidyactuarial-0.1.2/tidyactuarial/R/Da_angle.R |only tidyactuarial-0.1.2/tidyactuarial/R/Ia_angle.R |only tidyactuarial-0.1.2/tidyactuarial/R/Var_annuity_x.R |only tidyactuarial-0.1.2/tidyactuarial/R/Var_insurance_x.R |only tidyactuarial-0.1.2/tidyactuarial/R/arithmetic_annuity_av_tbl.R |only tidyactuarial-0.1.2/tidyactuarial/R/arithmetic_annuity_pv_tbl.R |only tidyactuarial-0.1.2/tidyactuarial/R/forward_rate_tbl.R |only tidyactuarial-0.1.2/tidyactuarial/R/ga_angle_n.R |only tidyactuarial-0.1.2/tidyactuarial/R/gs_angle_n.R |only tidyactuarial-0.1.2/tidyactuarial/R/portfolio_convexity_tbl.R |only tidyactuarial-0.1.2/tidyactuarial/R/portfolio_duration_tbl.R |only tidyactuarial-0.1.2/tidyactuarial/man/Da_angle.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/Da_angle_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/Ia_angle.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/Var_annuity_x.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/Var_insurance_x.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/a_angle_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/arithmetic_annuity_av_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/arithmetic_annuity_pv_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/bond_book_value_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/bond_callable_price_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/discount_factor_spot_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/forward_rate_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/future_value_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/ga_angle.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/ga_angle_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/gs_angle.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/gs_angle_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/portfolio_convexity_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/portfolio_duration_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/present_value_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/s_angle_tbl.Rd |only tidyactuarial-0.1.2/tidyactuarial/man/yield_curve_tbl.Rd |only tidyactuarial-0.1.3/tidyactuarial/DESCRIPTION | 27 tidyactuarial-0.1.3/tidyactuarial/MD5 | 191 +- tidyactuarial-0.1.3/tidyactuarial/NAMESPACE | 41 tidyactuarial-0.1.3/tidyactuarial/NEWS.md | 45 tidyactuarial-0.1.3/tidyactuarial/R/a_angle.R | 414 ++--- tidyactuarial-0.1.3/tidyactuarial/R/annuity_arith.R |only tidyactuarial-0.1.3/tidyactuarial/R/annuity_geom.R |only tidyactuarial-0.1.3/tidyactuarial/R/annuity_x.R | 670 +++++++-- tidyactuarial-0.1.3/tidyactuarial/R/annuity_xy.R | 457 +++--- tidyactuarial-0.1.3/tidyactuarial/R/bond_book_value.R | 296 +--- tidyactuarial-0.1.3/tidyactuarial/R/bond_callable_price.R | 256 +-- tidyactuarial-0.1.3/tidyactuarial/R/data-soa08lt.R |only tidyactuarial-0.1.3/tidyactuarial/R/discount_factor_spot.R | 219 +-- tidyactuarial-0.1.3/tidyactuarial/R/forward_rate.R |only tidyactuarial-0.1.3/tidyactuarial/R/future_value.R | 296 +--- tidyactuarial-0.1.3/tidyactuarial/R/insurance_variable_k.R | 4 tidyactuarial-0.1.3/tidyactuarial/R/insurance_x.R | 537 +++++-- tidyactuarial-0.1.3/tidyactuarial/R/insurance_xy.R | 481 ++++-- tidyactuarial-0.1.3/tidyactuarial/R/life_contract.R |only tidyactuarial-0.1.3/tidyactuarial/R/mc-utils.R |only tidyactuarial-0.1.3/tidyactuarial/R/mc_annuity.R |only tidyactuarial-0.1.3/tidyactuarial/R/mc_insurance.R |only tidyactuarial-0.1.3/tidyactuarial/R/mc_loss.R |only tidyactuarial-0.1.3/tidyactuarial/R/mc_multilife_status.R |only tidyactuarial-0.1.3/tidyactuarial/R/mc_premium.R |only tidyactuarial-0.1.3/tidyactuarial/R/mc_reserve.R |only tidyactuarial-0.1.3/tidyactuarial/R/plot_cash_flow.R | 529 +++++-- tidyactuarial-0.1.3/tidyactuarial/R/portfolio_convexity.R |only tidyactuarial-0.1.3/tidyactuarial/R/portfolio_duration.R |only tidyactuarial-0.1.3/tidyactuarial/R/premium_gross.R | 241 +-- tidyactuarial-0.1.3/tidyactuarial/R/premium_x.R | 582 +++++--- tidyactuarial-0.1.3/tidyactuarial/R/premium_xy.R | 664 +++++---- tidyactuarial-0.1.3/tidyactuarial/R/present_value.R | 300 +--- tidyactuarial-0.1.3/tidyactuarial/R/reserve_x.R | 661 +++++---- tidyactuarial-0.1.3/tidyactuarial/R/reserve_xy.R | 716 ++++++---- tidyactuarial-0.1.3/tidyactuarial/R/s_angle.R | 362 +---- tidyactuarial-0.1.3/tidyactuarial/R/simulate_life_mc.R |only tidyactuarial-0.1.3/tidyactuarial/R/simulate_lifetime.R |only tidyactuarial-0.1.3/tidyactuarial/R/simulate_lifetimes.R |only tidyactuarial-0.1.3/tidyactuarial/R/summary_mc.R |only tidyactuarial-0.1.3/tidyactuarial/R/yield_curve.R | 45 tidyactuarial-0.1.3/tidyactuarial/README.md | 20 tidyactuarial-0.1.3/tidyactuarial/data/soa08lt.rda |only tidyactuarial-0.1.3/tidyactuarial/man/a_angle.Rd | 119 - tidyactuarial-0.1.3/tidyactuarial/man/annuity_arith.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/annuity_geom.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/annuity_x.Rd | 176 +- tidyactuarial-0.1.3/tidyactuarial/man/annuity_xy.Rd | 171 -- tidyactuarial-0.1.3/tidyactuarial/man/bond_book_value.Rd | 84 - tidyactuarial-0.1.3/tidyactuarial/man/bond_callable_price.Rd | 84 - tidyactuarial-0.1.3/tidyactuarial/man/bond_convexity.Rd | 6 tidyactuarial-0.1.3/tidyactuarial/man/bond_duration.Rd | 6 tidyactuarial-0.1.3/tidyactuarial/man/bond_price.Rd | 6 tidyactuarial-0.1.3/tidyactuarial/man/bond_ytm.Rd | 6 tidyactuarial-0.1.3/tidyactuarial/man/discount_factor_spot.Rd | 52 tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_annuity_payment_times_annual.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_annuity_payment_times_fractional.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_assert_character_scalar.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_assert_column.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_assert_numeric_column.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_assert_numeric_scalar.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_assert_positive_integer.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_discount_factor.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_effective_rate.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_multilife_status_rank.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_payment_times.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_quantile_names.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/dot-mc_reserve_benefit_info.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/forward_rate.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/future_value.Rd | 107 - tidyactuarial-0.1.3/tidyactuarial/man/fv_flow.Rd | 2 tidyactuarial-0.1.3/tidyactuarial/man/insurance_variable_k.Rd | 4 tidyactuarial-0.1.3/tidyactuarial/man/insurance_x.Rd | 193 +- tidyactuarial-0.1.3/tidyactuarial/man/insurance_xy.Rd | 168 +- tidyactuarial-0.1.3/tidyactuarial/man/interest_equivalents.Rd | 5 tidyactuarial-0.1.3/tidyactuarial/man/irr_flow.Rd | 2 tidyactuarial-0.1.3/tidyactuarial/man/irr_flow_multi.Rd | 2 tidyactuarial-0.1.3/tidyactuarial/man/life_contract.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/mc_annuity.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/mc_insurance.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/mc_loss.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/mc_multilife_status.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/mc_premium.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/mc_reserve.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/plot_cash_flow.Rd | 125 + tidyactuarial-0.1.3/tidyactuarial/man/portfolio_convexity.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/portfolio_duration.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/premium_gross.Rd | 158 +- tidyactuarial-0.1.3/tidyactuarial/man/premium_x.Rd | 243 +-- tidyactuarial-0.1.3/tidyactuarial/man/premium_xy.Rd | 214 +- tidyactuarial-0.1.3/tidyactuarial/man/present_value.Rd | 108 - tidyactuarial-0.1.3/tidyactuarial/man/pv_flow.Rd | 4 tidyactuarial-0.1.3/tidyactuarial/man/reserve_x.Rd | 189 +- tidyactuarial-0.1.3/tidyactuarial/man/reserve_xy.Rd | 201 +- tidyactuarial-0.1.3/tidyactuarial/man/s_angle.Rd | 115 - tidyactuarial-0.1.3/tidyactuarial/man/simulate_annuity_x.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/simulate_insurance_x.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/simulate_lifetime.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/simulate_lifetimes.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/soa08lt.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/standardize_interest.Rd | 5 tidyactuarial-0.1.3/tidyactuarial/man/summary_mc.Rd |only tidyactuarial-0.1.3/tidyactuarial/man/yield_curve.Rd |only tidyactuarial-0.1.3/tidyactuarial/tests/testthat.R | 16 tidyactuarial-0.1.3/tidyactuarial/tests/testthat/test-smoke.R | 15 tidyactuarial-0.1.3/tidyactuarial/tests/testthat/test-soa08lt.R |only 139 files changed, 6098 insertions(+), 4542 deletions(-)
Title: Simulate Agricultural Production and Evolution of Pesticide
Resistance
Description: Simulates individual-based models of agricultural pest management
and the evolution of pesticide resistance. Management occurs on a spatially
explicit landscape that is divided into an arbitrary number of farms that
can grow one of up to 10 crops and apply one of up to 10 pesticides. Pest
genomes are modelled in a way that allows for any number of pest traits with
an arbitrary covariance structure that is constructed using an evolutionary
algorithm in the mine_gmatrix() function. Simulations are then run using the
run_farm_sim() function. This package thereby allows for highly mechanistic
social-ecological models of the evolution of pesticide resistance under
different types of crop rotation and pesticide application regimes.
Author: A. Bradley Duthie [aut, cre] ,
Rose McKeon [aut, ctr],
Rosie Mangan [ctr],
Luc Bussiére [ctr],
Matthew Tinsley [ctr]
Maintainer: A. Bradley Duthie <brad.duthie@gmail.com>
Diff between resevol versions 0.4.0.2 dated 2025-05-01 and 0.4.0.4 dated 2026-05-28
DESCRIPTION | 6 +-- MD5 | 14 ++++---- R/landscape.R | 4 +- inst/doc/advanced_techniques.html | 6 +-- inst/doc/evolutionary_algorithm.html | 55 ++++++++++++++++++----------------- inst/doc/pesticide_thresholds.html | 4 +- inst/doc/resevol.html | 2 - inst/refs.bib | 12 +++++++ 8 files changed, 59 insertions(+), 44 deletions(-)
Title: Crystallographic Information File (CIF) Data Processing Tools
Description: Provides a suite of functions to parse Crystallographic Information
Files (.cif), extracting essential data such as chemical formulas, unit cell
parameters, atomic coordinates, and symmetry operations. It also includes
tools to calculate interatomic distances, identify bonded pairs using various
algorithms (minimum_distance, brunner_nn_reciprocal, econ_nn, crystal_nn), determine nearest
neighbor counts, and calculate bond angles. The package is designed to
facilitate the preparation of crystallographic data for further analysis,
including machine learning applications in materials science.
Methods are described in:
Brunner (1977) <doi:10.1107/S0567739477000461>;
Hoppe (1979) <doi:10.1524/zkri.1979.150.14.23>;
O'Keeffe (1979) <doi:10.1107/S0567739479001765>;
Shannon (1976) <doi:10.1107/S0567739476001551>;
Pan et al. (2021) <doi:10.1021/acs.inorgchem.0c02996>;
Pauling (1960, ISBN:978-0801403330).
Author: Don Ngo [aut, cre] ,
Anirudh Prabhu [aut] ,
Julia-Maria Hubner [aut]
Maintainer: Don Ngo <dngo@carnegiescience.edu>
Diff between crystract versions 1.0.0 dated 2026-03-20 and 1.0.1 dated 2026-05-28
DESCRIPTION | 6 MD5 | 41 +- NEWS.md | 6 R/calculate_properties.R | 2 R/extract_cif_data.R | 101 +++--- R/predict_bonds.R | 4 R/process_cif_files.R | 11 README.md | 55 ++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/crystract.R | 47 +- inst/doc/crystract.Rmd | 107 +++--- inst/doc/crystract.html | 663 ++++++++++++++++++++-------------------- inst/extdata/2405219.cif |only man/aggregate_batch_results.Rd | 2 man/analyze_cif_files.Rd | 2 man/analyze_single_cif.Rd | 2 man/crystal_nn.Rd | 2 man/export_analysis_to_csv.Rd | 2 man/filter_by_wyckoff_symbol.Rd | 2 man/voronoi_nn.Rd | 2 vignettes/crystract.Rmd | 107 +++--- 22 files changed, 641 insertions(+), 523 deletions(-)
Title: Consensus Seriation for Binary Data
Description: Determining consensus seriations for binary incidence matrices, using a two-step process of Procrustes-fit correspondence analysis for heuristic selection of partial seriations and iterative regression to establish a single consensus. Contains the Lakhesis Calculator, a graphical platform for identifying seriated sequences. Collins-Elliott (2026) "Lakhesis: Consensus Seriation via Iterative Regression of Partial Rankings for Binary Data" <doi:10.1080/02664763.2026.2672564>.
Author: Stephen A. Collins-Elliott [aut, cre]
Maintainer: Stephen A. Collins-Elliott <sce@utk.edu>
Diff between lakhesis versions 1.1 dated 2026-04-25 and 1.1.2 dated 2026-05-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- README.md | 9 +++++++++ build/partial.rdb |binary inst/CITATION | 6 ++++-- 5 files changed, 21 insertions(+), 10 deletions(-)
Title: Native and Extensible R Driver for 'Zarr'
Description: The 'Zarr' specification is widely used to build libraries for the storage and retrieval of n-dimensional array data from data stores ranging from local file systems to the cloud. This package is a native 'Zarr' implementation in R with support for all required features of 'Zarr' version 3. It is designed to be extensible such that new stores, codecs and extensions can be added easily.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between zarr versions 0.3.0 dated 2026-04-18 and 0.4.0 dated 2026-05-28
DESCRIPTION | 16 +- MD5 | 76 ++++++--- NAMESPACE | 4 NEWS.md | 14 + R/RcppExports.R |only R/api.R | 15 + R/array.R | 24 ++- R/array_builder.R | 140 ++++++++++++----- R/chunking.R |only R/chunking_regular.R | 231 ++++++++++++++--------------- R/codec.R | 270 ++++++++++++++++++++++++++++++---- R/convention_ref.R | 133 ++++++---------- R/data_types.R | 56 +++---- R/node.R | 29 +++ R/sharding.R |only R/store.R | 40 +++-- R/store_http.R | 63 ++++++- R/store_local.R | 8 - R/uri.R | 74 +++++++++ R/utils.R | 46 +++++ R/zarr.R | 7 R/zzz.R | 1 README.md | 2 man/as_zarr.Rd | 6 man/chunk_grid_regular.Rd | 41 +---- man/chunk_grid_sharded.Rd |only man/chunk_grid_sharded_IO.Rd |only man/chunking.Rd |only man/fill_array_impl.Rd |only man/str.chunk_grid_sharded.Rd |only man/zarr.Rd | 7 man/zarr_array.Rd | 9 - man/zarr_codec_blosc.Rd | 2 man/zarr_codec_bytes.Rd | 9 - man/zarr_codec_sharding.Rd |only man/zarr_codec_ucs4.Rd |only man/zarr_codec_vlenutf8.Rd |only man/zarr_conv_ref.Rd | 49 +++--- man/zarr_conventions.Rd |only man/zarr_data_type.Rd | 2 man/zarr_httpstore.Rd | 9 + src |only tests/testthat/helper-string-arrays.R |only tests/testthat/setup.R |only tests/testthat/test-parallel.R |only tests/testthat/test-sharding.R |only tests/testthat/test-strings.R |only tests/testthat/testdata.zip |only 48 files changed, 941 insertions(+), 442 deletions(-)
Title: Bayesian Adaptive Trial Simulator Software (BATSS) for
Generalised Linear Models
Description: Defines operating characteristics of Bayesian Adaptive Trials considering a generalised linear model response via Monte Carlo simulations of Bayesian GLM fitted via integrated Laplace approximations (INLA).
Author: Dominique-Laurent Couturier [aut, cre] ,
Liz Ryan [aut] ,
Rainer Puhr [aut],
Thomas Jaki [aut] ,
Stephane Heritier [aut]
Maintainer: Dominique-Laurent Couturier <dominique.couturier@mrc-bsu.cam.ac.uk>
Diff between BATSS versions 1.1.1 dated 2025-10-02 and 1.2.0 dated 2026-05-28
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/glm.R | 27 ++++++++++++++++++--------- R/glm_combine.R | 4 ++-- R/glm_internal.R | 48 ++++++++++++++++++++++++++++++------------------ R/plot.batss.R | 12 ++++++------ R/summary.batss.R | 10 +++++----- man/batss.glm.Rd | 2 +- 8 files changed, 72 insertions(+), 51 deletions(-)
Title: Sparse Arrays and Multivariate Polynomials
Description: Sparse arrays interpreted as multivariate polynomials.
Uses 'disordR' discipline (Hankin, 2022,
<doi:10.48550/ARXIV.2210.03856>). To cite the package in
publications please use Hankin (2022) <doi:10.48550/ARXIV.2210.10848>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between spray versions 1.0-27 dated 2025-01-29 and 1.1-1 dated 2026-05-28
spray-1.0-27/spray/src/spray_init.c |only spray-1.1-1/spray/DESCRIPTION | 12 - spray-1.1-1/spray/MD5 | 57 ++-- spray-1.1-1/spray/NAMESPACE | 2 spray-1.1-1/spray/NEWS.md | 7 spray-1.1-1/spray/R/RcppExports.R | 34 +- spray-1.1-1/spray/R/spray.R | 324 +++++++++++++++++----------- spray-1.1-1/spray/R/spray_ops.R | 10 spray-1.1-1/spray/README.md | 2 spray-1.1-1/spray/build/vignette.rds |binary spray-1.1-1/spray/inst/doc/spray.R | 22 - spray-1.1-1/spray/inst/doc/spray.Rnw | 22 + spray-1.1-1/spray/inst/doc/spray.pdf |binary spray-1.1-1/spray/man/asum.Rd | 10 spray-1.1-1/spray/man/constant.Rd | 8 spray-1.1-1/spray/man/deriv.Rd | 6 spray-1.1-1/spray/man/ooom.Rd | 6 spray-1.1-1/spray/man/pmax.Rd | 46 +-- spray-1.1-1/spray/man/rspray.Rd | 4 spray-1.1-1/spray/man/spray-class.Rd | 12 - spray-1.1-1/spray/man/spray_cpp.Rd | 24 -- spray-1.1-1/spray/man/spraycross.Rd | 14 - spray-1.1-1/spray/man/subs.Rd | 6 spray-1.1-1/spray/man/zap.Rd | 6 spray-1.1-1/spray/man/zero.Rd | 4 spray-1.1-1/spray/src/RcppExports.cpp | 85 ++++--- spray-1.1-1/spray/src/spray_ops.cpp | 312 ++++---------------------- spray-1.1-1/spray/src/spray_ops.h |only spray-1.1-1/spray/tests/testthat/test_aad.R |only spray-1.1-1/spray/vignettes/spray.Rnw | 22 + spray-1.1-1/spray/vignettes/spray.bib | 2 31 files changed, 481 insertions(+), 578 deletions(-)
Title: Interface to the 'Pharmpy' 'Pharmacometrics' Library
Description: Interface to the 'Pharmpy' 'pharmacometrics' library. The 'Reticulate' package is used to interface Python from R.
Author: Rikard Nordgren [aut, cre, cph],
Stella Belin [aut, cph],
Mats O. Karlsson [sad],
Andrew C. Hooker [sad],
Xiaomei Chen [sad],
Sebastian Ueckert [sad] ,
Simon Buatois [rev],
Joao A. Abrantes [rev],
Emilie Schindler [rev],
F. Hoffmann-La Roche Ltd. [fn [...truncated...]
Maintainer: Rikard Nordgren <rikard.nordgren@uu.se>
Diff between pharmr versions 2.1.0 dated 2026-05-11 and 2.1.1 dated 2026-05-28
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 3 ++- R/functions_wrapper.R | 4 ++-- R/install.R | 2 +- R/printing.R | 18 ++++++++++++------ R/zzz.R | 1 - README.md | 8 -------- man/run_iivsearch.Rd | 4 ++-- 9 files changed, 33 insertions(+), 35 deletions(-)
Title: Nested Dichotomy Logistic Regression Models
Description: Provides functions for specifying and fitting nested
dichotomy logistic regression models for a multi-category response and
methods for summarising and plotting those models. Nested dichotomies are
statistically independent, and hence provide an additive decomposition
of tests for the overall 'polytomous' response. When the dichotomies
make sense substantively, this method can be a simpler alternative to
the standard 'multinomial' logistic model which compares response
categories to a reference level. See: J. Fox (2016), "Applied
Regression Analysis and Generalized Linear Models", 3rd Ed., ISBN
1452205663.
Author: John Fox [aut] ,
Michael Friendly [aut, cre] ,
Achim Zeileis [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between nestedLogit versions 0.4.0 dated 2026-03-06 and 0.4.2 dated 2026-05-28
DESCRIPTION | 18 MD5 | 85 +- NAMESPACE | 16 NEWS.md | 15 R/RSQ.R |only R/equatiomatic.R |only R/nested.R | 3 R/nestedHypotheses.R | 393 ++++++------ R/nestedMethods.R | 609 +++++++++--------- R/predict.nestedLogit.R | 3 build/partial.rdb |only build/vignette.rds |binary inst/WORDLIST | 29 inst/doc/ggeffects.html | 18 inst/doc/latex-equations.R |only inst/doc/latex-equations.Rmd |only inst/doc/latex-equations.html |only inst/doc/nestedLogit.R | 3 inst/doc/nestedLogit.Rmd | 32 inst/doc/nestedLogit.html | 683 +++++++++++---------- inst/doc/other-examples.R | 6 inst/doc/other-examples.Rmd | 32 inst/doc/other-examples.html | 1359 ++++++++++++++++++++++-------------------- inst/doc/plotting-ggplot.html | 29 man/RSQ.Rd |only man/extract_eq.nestedLogit.Rd |only man/partials/methods.Rmd | 1 vignettes/fig |only vignettes/latex-equations.Rmd |only vignettes/nestedLogit.Rmd | 32 vignettes/other-examples.Rmd | 32 vignettes/references.bib | 102 ++- 32 files changed, 1985 insertions(+), 1515 deletions(-)
Title: Wait for a Key Press in a Terminal
Description: Wait for a single key press at the 'R' prompt. This works in
terminals, but does not currently work in the 'Windows' 'GUI', the
'macOS' 'GUI' ('R.app'), in 'Emacs' 'ESS', in an 'Emacs' shell buffer
or in 'R Studio'. In these cases 'keypress' stops with an error
message.
Author: Gabor Csardi [aut, cre, cph] ,
Jon Griffiths [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between keypress versions 1.3.1 dated 2023-12-10 and 1.3.2 dated 2026-05-28
DESCRIPTION | 36 +++++++++++++++++++++++------------- MD5 | 30 ++++++++++++++++++------------ NEWS.md | 4 ++++ R/keypress.R | 22 +++++++++++++--------- R/rstudio-detect.R | 40 +++++++++++++++++++++++----------------- R/utils.R |only README.md | 11 +++++------ inst/include/keypress.h | 4 ++-- man/keypress.Rd | 4 ++-- man/without_echo.Rd | 2 +- src/init.c | 2 ++ src/keypress-internal.h | 3 +++ src/keypress-unix.c | 30 ++++++++++++++++++++++++++++++ src/keypress-win.c | 11 +++++++++++ tests |only 15 files changed, 137 insertions(+), 62 deletions(-)
Title: Hidden Markov Models for Multivariate Panel Data
Description: Estimates hidden Markov models from the family of Cholesky-decomposed Gaussian hidden Markov models (CDGHMM) under various missingness schemes. This family improves upon estimation of traditional Gaussian HMMs by introducing parsimony, as well as, controlling for dropped out observations and non-random missingness. See Neal, Sochaniwsky and McNicholas (2024) <DOI:10.1007/s11222-024-10462-0>.
Author: Mackenzie R. Neal [aut, cre] ,
Alexa A. Sochaniwsky [aut],
Paul D. McNicholas [aut]
Maintainer: Mackenzie R. Neal <nealm6@mcmaster.ca>
Diff between CDGHMM versions 0.1.3 dated 2026-05-27 and 0.1.4 dated 2026-05-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/Support_functions.R | 37 ++++++++++++++----------------------- R/cdghmm.R | 4 ++-- man/cdghmm.Rd | 4 ++-- 5 files changed, 26 insertions(+), 35 deletions(-)
Title: An Interface to the 'AutoDesk' 'API' Platform
Description: An interface to the 'AutoDesk' Platform Services ('APS') 'API' including
the Authentication 'API' for obtaining 'OAuth2' tokens with expiry tracking, Data
Management 'API' for managing buckets and objects across the platform's cloud
services, Design Automation 'API' for running automated tasks on design files in
the cloud, Model Derivative 'API' for translating design files into 'SVF', 'SVF2',
'OBJ', and 'STL' formats and extracting model data, Reality Capture 'API' for
generating 3D models from photogrammetry image sets, and Viewer for rendering 2D
and 3D models in 'Shiny' applications.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between AutoDeskR versions 0.1.5 dated 2024-09-10 and 0.5.0 dated 2026-05-28
AutoDeskR-0.1.5/AutoDeskR/build |only AutoDeskR-0.1.5/AutoDeskR/inst/doc |only AutoDeskR-0.1.5/AutoDeskR/vignettes |only AutoDeskR-0.5.0/AutoDeskR/DESCRIPTION | 40 - AutoDeskR-0.5.0/AutoDeskR/MD5 | 112 ++- AutoDeskR-0.5.0/AutoDeskR/NAMESPACE | 50 + AutoDeskR-0.5.0/AutoDeskR/NEWS.md | 111 +++ AutoDeskR-0.5.0/AutoDeskR/R/authentication.R | 55 - AutoDeskR-0.5.0/AutoDeskR/R/dataManagement.R | 306 ++++++++-- AutoDeskR-0.5.0/AutoDeskR/R/designAutomation.R | 149 +--- AutoDeskR-0.5.0/AutoDeskR/R/mcp.R |only AutoDeskR-0.5.0/AutoDeskR/R/modelDerivative.R | 362 +++++++----- AutoDeskR-0.5.0/AutoDeskR/R/print.R |only AutoDeskR-0.5.0/AutoDeskR/R/realityCapture.R |only AutoDeskR-0.5.0/AutoDeskR/R/utils.R |only AutoDeskR-0.5.0/AutoDeskR/R/viewer.R | 10 AutoDeskR-0.5.0/AutoDeskR/README.md | 93 ++- AutoDeskR-0.5.0/AutoDeskR/inst/CITATION | 6 AutoDeskR-0.5.0/AutoDeskR/inst/images/make_stickers.R |only AutoDeskR-0.5.0/AutoDeskR/inst/images/sticker1_cube.png |only AutoDeskR-0.5.0/AutoDeskR/inst/images/sticker2_building.png |only AutoDeskR-0.5.0/AutoDeskR/inst/images/sticker3_network.png |only AutoDeskR-0.5.0/AutoDeskR/inst/mcp-server.R |only AutoDeskR-0.5.0/AutoDeskR/inst/viewer3D/headless.html | 85 +- AutoDeskR-0.5.0/AutoDeskR/inst/viewer3D/template.html | 30 AutoDeskR-0.5.0/AutoDeskR/inst/viewer3D/vr.html | 53 - AutoDeskR-0.5.0/AutoDeskR/man/aps_error.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/as_tibble.listBuckets.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/as_tibble.listObjects.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/autodeskr_mcp_tools.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/checkBucket.Rd | 2 AutoDeskR-0.5.0/AutoDeskR/man/checkFile.Rd | 4 AutoDeskR-0.5.0/AutoDeskR/man/checkPdf.Rd | 33 - AutoDeskR-0.5.0/AutoDeskR/man/checkPhotoscene.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/createPhotoscene.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/deleteBucket.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/deleteObject.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/downloadFile.Rd | 24 AutoDeskR-0.5.0/AutoDeskR/man/figures |only AutoDeskR-0.5.0/AutoDeskR/man/getData.Rd | 6 AutoDeskR-0.5.0/AutoDeskR/man/getMetadata.Rd | 4 AutoDeskR-0.5.0/AutoDeskR/man/getObjectTree.Rd | 8 AutoDeskR-0.5.0/AutoDeskR/man/getOutputUrn.Rd | 6 AutoDeskR-0.5.0/AutoDeskR/man/getToken.Rd | 19 AutoDeskR-0.5.0/AutoDeskR/man/is_expired.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/listBuckets.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/listObjects.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/makeBucket.Rd | 5 AutoDeskR-0.5.0/AutoDeskR/man/makePdf.Rd | 18 AutoDeskR-0.5.0/AutoDeskR/man/processPhotoscene.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/translateObj.Rd | 8 AutoDeskR-0.5.0/AutoDeskR/man/translateStl.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/translateSvf.Rd | 4 AutoDeskR-0.5.0/AutoDeskR/man/translateSvf2.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/uploadFile.Rd | 5 AutoDeskR-0.5.0/AutoDeskR/man/uploadFileSigned.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/uploadImages.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/waitForFile.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/waitForPhotoscene.Rd |only AutoDeskR-0.5.0/AutoDeskR/man/waitForWorkItem.Rd |only AutoDeskR-0.5.0/AutoDeskR/tests |only 61 files changed, 1046 insertions(+), 562 deletions(-)
More information about SSReliabilityClaytonMWD at CRAN
Permanent link
Title: Native Raster Image Tools
Description: Native rasters are a core R image format which use a compact
color representation. This color representation closely aligns with
graphics device internals meaning that these images can be rendered quickly.
This package provides functions to quickly create, manipulate and composite native
rasters.
Author: Mike Cheng [aut, cre, cph],
Julien Vernay [ctb]
Maintainer: Mike Cheng <mikefc@coolbutuseless.com>
Diff between nara versions 1.0.1 dated 2026-05-27 and 1.0.2 dated 2026-05-28
DESCRIPTION | 8 ++--- MD5 | 70 ++++++++++++++++++++++---------------------- NEWS.md | 6 +++ build/vignette.rds |binary inst/doc/blitting.html | 12 +++---- inst/doc/conversion.html | 14 ++++---- inst/doc/masks.html | 4 +- inst/doc/triangles.html | 8 ++--- inst/include/private/nara.h | 9 +++-- man/magick_to_nr.Rd | 16 +++------- man/matrix_to_nr.Rd | 10 +++--- man/nara-package.Rd | 5 +++ man/nr_blit.Rd | 4 +- man/nr_blit_multi.Rd | 4 +- man/nr_circle.Rd | 10 +++--- man/nr_color_replace.Rd | 8 ++--- man/nr_copy.Rd | 4 +- man/nr_desaturate.Rd | 8 ++--- man/nr_dither.Rd | 8 ++--- man/nr_fliph.Rd | 8 ++--- man/nr_flipv.Rd | 8 ++--- man/nr_new.Rd | 4 +- man/nr_polygon.Rd | 10 +++--- man/nr_polyline.Rd | 10 +++--- man/nr_rect.Rd | 10 +++--- man/nr_resize.Rd | 4 +- man/nr_rotate.Rd | 8 ++--- man/nr_scale.Rd | 4 +- man/nr_threshold.Rd | 8 ++--- man/nr_to_raster.Rd | 10 +++--- man/nr_transpose.Rd | 8 ++--- man/nr_tri_mesh.Rd | 10 +++--- man/nrs_to_gif.Rd | 10 +++--- man/nrs_to_mp4.Rd | 10 +++--- src/init-decls.h | 2 - src/init.c | 4 +- 36 files changed, 170 insertions(+), 166 deletions(-)
Title: API Wrapper for 'Ipeadata'
Description: Provides direct access to the macroeconomic, financial,
and regional database maintained by the Institute for
Applied Economic Research (Ipea) via the Ipeadata API.
For more information, see <https://www.ipeadata.gov.br/>.
Author: Luiz Eduardo Gomes [aut, cre] ,
Daniel Herszenhut [ctb] ,
Instituto de Pesquisa Economica Aplicada [cph, fnd]
Maintainer: Luiz Eduardo Gomes <luiz.gomes@ipea.gov.br>
Diff between ipeadatar versions 0.1.6 dated 2022-02-03 and 0.2.0 dated 2026-05-28
ipeadatar-0.1.6/ipeadatar/R/ipeadata_pkg.R |only ipeadatar-0.1.6/ipeadatar/inst/doc/intro-ipeadatar.R |only ipeadatar-0.1.6/ipeadatar/inst/doc/intro-ipeadatar.Rmd |only ipeadatar-0.1.6/ipeadatar/inst/doc/intro-ipeadatar.html |only ipeadatar-0.1.6/ipeadatar/man/available_countries.Rd |only ipeadatar-0.1.6/ipeadatar/tests/testthat/test-skip_ipeadata.R |only ipeadatar-0.1.6/ipeadatar/tests/testthat/test-skip_metadata.R |only ipeadatar-0.1.6/ipeadatar/vignettes/intro-ipeadatar.Rmd |only ipeadatar-0.2.0/ipeadatar/DESCRIPTION | 67 ++++--- ipeadatar-0.2.0/ipeadatar/LICENSE | 4 ipeadatar-0.2.0/ipeadatar/MD5 | 55 ++++-- ipeadatar-0.2.0/ipeadatar/NAMESPACE | 5 ipeadatar-0.2.0/ipeadatar/NEWS.md |only ipeadatar-0.2.0/ipeadatar/R/available_series.R |only ipeadatar-0.2.0/ipeadatar/R/available_subjects.R |only ipeadatar-0.2.0/ipeadatar/R/available_territories.R |only ipeadatar-0.2.0/ipeadatar/R/ipeadata.R |only ipeadatar-0.2.0/ipeadatar/R/ipeadatar-package.R |only ipeadatar-0.2.0/ipeadatar/R/metadata.R |only ipeadatar-0.2.0/ipeadatar/R/search_series.R |only ipeadatar-0.2.0/ipeadatar/R/sysdata.rda |only ipeadatar-0.2.0/ipeadatar/build/vignette.rds |binary ipeadatar-0.2.0/ipeadatar/inst/WORDLIST |only ipeadatar-0.2.0/ipeadatar/inst/doc/ipeadatar.R |only ipeadatar-0.2.0/ipeadatar/inst/doc/ipeadatar.Rmd |only ipeadatar-0.2.0/ipeadatar/inst/doc/ipeadatar.html |only ipeadatar-0.2.0/ipeadatar/man/available_series.Rd | 21 +- ipeadatar-0.2.0/ipeadatar/man/available_subjects.Rd | 17 + ipeadatar-0.2.0/ipeadatar/man/available_territories.Rd | 43 ++-- ipeadatar-0.2.0/ipeadatar/man/figures |only ipeadatar-0.2.0/ipeadatar/man/ipeadata.Rd | 86 +++++---- ipeadatar-0.2.0/ipeadatar/man/ipeadatar-package.Rd |only ipeadatar-0.2.0/ipeadatar/man/metadata.Rd | 89 +++++----- ipeadatar-0.2.0/ipeadatar/man/search_series.Rd | 63 +++---- ipeadatar-0.2.0/ipeadatar/tests/spelling.R |only ipeadatar-0.2.0/ipeadatar/tests/testthat.R | 8 ipeadatar-0.2.0/ipeadatar/tests/testthat/test-available_series.R |only ipeadatar-0.2.0/ipeadatar/tests/testthat/test-available_subjects.R |only ipeadatar-0.2.0/ipeadatar/tests/testthat/test-available_territories.R |only ipeadatar-0.2.0/ipeadatar/tests/testthat/test-ipeadata.R |only ipeadatar-0.2.0/ipeadatar/tests/testthat/test-metadata.R |only ipeadatar-0.2.0/ipeadatar/tests/testthat/test-search_series.R |only ipeadatar-0.2.0/ipeadatar/vignettes/ipeadatar.Rmd |only 43 files changed, 254 insertions(+), 204 deletions(-)
Title: Identification and Classification of the Most Influential Nodes
Description: Provides functions for the identification, classification, and
ranking of influential nodes and candidate features from network and omics
data. The package implements the Integrated Value of Influence (IVI) for
integrative network centrality analysis, the SIR-based Influence Ranking
(SIRIR) model for unsupervised influence ranking, and the Experimental
data-based Integrative Ranking (ExIR) model for prioritizing candidate
driver, biomarker, and mediator features from experimental omics data.
Functions are provided for network reconstruction from adjacency matrices
and data frames, topological analysis, centrality calculation, assessment
of associations between centrality measures, and conditional probability
analysis. ExIR supports bulk and single-cell omics data, including matrices,
sparse matrices, data frames, tibbles, and Seurat objects.
Author: Adrian Salavaty [aut, cre] ,
Mirana Ramialison [ths],
Peter D. Currie [ths]
Maintainer: Adrian Salavaty <abbas.salavaty@gmail.com>
Diff between influential versions 2.3.0 dated 2026-02-13 and 2.3.1 dated 2026-05-28
influential-2.3.0/influential/R/functions.R |only influential-2.3.1/influential/DESCRIPTION | 36 influential-2.3.1/influential/MD5 | 99 - influential-2.3.1/influential/NAMESPACE | 2 influential-2.3.1/influential/NEWS.md | 157 + influential-2.3.1/influential/R/RcppExports.R |only influential-2.3.1/influential/R/cent-network-vis.R |only influential-2.3.1/influential/R/centrality-betweenness.R |only influential-2.3.1/influential/R/centrality-clusterRank.R |only influential-2.3.1/influential/R/centrality-collective-influence.R |only influential-2.3.1/influential/R/centrality-h-index.R |only influential-2.3.1/influential/R/centrality-hubness-score.R |only influential-2.3.1/influential/R/centrality-ivi-from-indices.R |only influential-2.3.1/influential/R/centrality-ivi.R |only influential-2.3.1/influential/R/centrality-lh-index.R |only influential-2.3.1/influential/R/centrality-neighborhood-connectivity.R |only influential-2.3.1/influential/R/centrality-spreading-score.R |only influential-2.3.1/influential/R/comp-manipulate.R |only influential-2.3.1/influential/R/cond-prob-analysis.R |only influential-2.3.1/influential/R/double-cent-assess-noRegression.R |only influential-2.3.1/influential/R/double-cent-assess.R |only influential-2.3.1/influential/R/exir-diff-data-assembly.R |only influential-2.3.1/influential/R/exir-vis.R |only influential-2.3.1/influential/R/exir.R |only influential-2.3.1/influential/R/fcor.R |only influential-2.3.1/influential/R/globals.R |only influential-2.3.1/influential/R/helpers.R |only influential-2.3.1/influential/R/igraph-reexports.R |only influential-2.3.1/influential/R/influential-package.R |only influential-2.3.1/influential/R/shiny.R |only influential-2.3.1/influential/R/sif2igraph.R |only influential-2.3.1/influential/R/sirir.R |only influential-2.3.1/influential/README.md | 29 influential-2.3.1/influential/inst/CITATION | 46 influential-2.3.1/influential/inst/doc/Vignettes.R | 194 +- influential-2.3.1/influential/inst/doc/Vignettes.Rmd | 341 +++ influential-2.3.1/influential/inst/doc/Vignettes.html | 878 ++++++---- influential-2.3.1/influential/man/betweenness.Rd | 7 influential-2.3.1/influential/man/cent_network.vis.Rd | 2 influential-2.3.1/influential/man/clusterRank.Rd | 2 influential-2.3.1/influential/man/collective.influence.Rd | 2 influential-2.3.1/influential/man/comp_manipulate.Rd | 2 influential-2.3.1/influential/man/cond.prob.analysis.Rd | 2 influential-2.3.1/influential/man/diff_data.assembly.Rd | 2 influential-2.3.1/influential/man/double.cent.assess.Rd | 2 influential-2.3.1/influential/man/double.cent.assess.noRegression.Rd | 2 influential-2.3.1/influential/man/exir.Rd | 133 + influential-2.3.1/influential/man/exir.vis.Rd | 2 influential-2.3.1/influential/man/fcor.Rd | 63 influential-2.3.1/influential/man/h_index.Rd | 2 influential-2.3.1/influential/man/hubness.score.Rd | 2 influential-2.3.1/influential/man/igraph-reexports.Rd |only influential-2.3.1/influential/man/influential-package.Rd | 2 influential-2.3.1/influential/man/ivi.Rd | 2 influential-2.3.1/influential/man/ivi.from.indices.Rd | 2 influential-2.3.1/influential/man/lh_index.Rd | 2 influential-2.3.1/influential/man/neighborhood.connectivity.Rd | 2 influential-2.3.1/influential/man/reexports.Rd | 2 influential-2.3.1/influential/man/runShinyApp.Rd | 2 influential-2.3.1/influential/man/sif2igraph.Rd | 2 influential-2.3.1/influential/man/sirir.Rd | 2 influential-2.3.1/influential/man/spreading.score.Rd | 2 influential-2.3.1/influential/src |only influential-2.3.1/influential/vignettes/Vignettes.Rmd | 341 +++ influential-2.3.1/influential/vignettes/influentialVignette.css | 472 +++-- 65 files changed, 2091 insertions(+), 749 deletions(-)
Title: Open-Access Computational Biology Datasets
Description: Efficiently access the 'Bedrock Bio' library of open-access
computational biology datasets. Lazily query datasets backed by 'DuckDB'
and 'Apache Iceberg', with support for predicate pushdown and column
projection to the cloud storage backend. This enables quick, iterative
access to otherwise massive, unwieldy datasets without downloading them
in full. See <https://bedrock.bio> for available datasets and
documentation.
Author: Liam Abbott [aut, cre, cph]
Maintainer: Liam Abbott <liam@bedrock.bio>
Diff between bedrockbio versions 1.3.1 dated 2026-05-18 and 1.4.0 dated 2026-05-28
DESCRIPTION | 11 +--- MD5 | 24 +++++--- NAMESPACE | 2 NEWS.md | 6 ++ R/describe_namespace.R |only R/describe_table.R | 2 R/list_namespaces.R |only R/utils.R | 85 ++++++++++++++++++++----------- README.md | 40 ++++++++------ man/bedrockbio-package.Rd | 4 - man/describe_namespace.Rd |only man/describe_table.Rd | 2 man/list_namespaces.Rd |only tests/testthat/test-describe_namespace.R |only tests/testthat/test-list_namespaces.R |only tests/testthat/test-utils.R | 66 ++++++++++++++---------- 16 files changed, 149 insertions(+), 93 deletions(-)
Title: An Improved Wrapper of image()
Description: This is a wrapper function for image(), which makes reasonable
raster plots with nice axis and other useful features.
Author: Martin Seilmayer [aut, cre]
Maintainer: Martin Seilmayer <martin.seilmayer@dhsn.de>
Diff between rasterImage versions 0.4.0 dated 2019-10-14 and 0.4.1 dated 2026-05-28
rasterImage-0.4.0/rasterImage/NEWS.md |only rasterImage-0.4.1/rasterImage/DESCRIPTION | 18 + rasterImage-0.4.1/rasterImage/MD5 | 10 rasterImage-0.4.1/rasterImage/NEWS |only rasterImage-0.4.1/rasterImage/R/colorPalette.R | 242 +++++++++++----------- rasterImage-0.4.1/rasterImage/man/colorPalette.Rd | 104 ++++----- rasterImage-0.4.1/rasterImage/man/rasterImage2.Rd | 175 ++++++++------- 7 files changed, 284 insertions(+), 265 deletions(-)
Title: Evolutionary Transcriptomics
Description: Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.
Author: Hajk-Georg Drost [aut, cre] ,
Stefan Manolache [aut, ctb] ,
Jaruwatana Sodai Lotharukpong [aut, ctb] ,
Nikola Kalabova [aut, ctb] ,
Filipa Martins Costa [aut, ctb],
Kristian K Ullrich [aut, ctb]
Maintainer: Hajk-Georg Drost <hajk-georg.drost@tuebingen.mpg.de>
Diff between myTAI versions 2.3.5 dated 2026-02-05 and 2.3.6 dated 2026-05-28
DESCRIPTION | 8 - MD5 | 28 ++-- NEWS.md | 4 build/vignette.rds |binary inst/doc/myTAI.html | 2 inst/doc/other-strata.html | 4 inst/doc/phylo-expression-object.html | 6 inst/doc/tai-gallery.html | 88 ++++++------- inst/doc/tai-stats.html | 56 ++++---- inst/doc/tai-transform.html | 16 +- inst/doc/taxonomy.R | 66 +++++----- inst/doc/taxonomy.Rmd | 36 +++-- inst/doc/taxonomy.html | 223 +++++----------------------------- man/plot_signature.Rd | 5 vignettes/taxonomy.Rmd | 36 +++-- 15 files changed, 229 insertions(+), 349 deletions(-)
More information about fable.bayesRecon at CRAN
Permanent link
Title: Assessing Skill of Climate Forecasts on Seasonal-to-Decadal
Timescales
Description: Exploits dynamical seasonal forecasts in order to provide
information relevant to stakeholders at the seasonal timescale. The package
contains process-based methods for forecast calibration, bias correction,
statistical and stochastic downscaling, optimal forecast combination and
multivariate verification, as well as basic and advanced tools to obtain
tailored products. This package was developed in the context of the ERA4CS
project MEDSCOPE and the H2020 S2S4E project and includes contributions from
ArticXchange project founded by EU-PolarNet 2. Implements methods described in
Pérez-Zanón et al. (2022) <doi:10.5194/gmd-15-6115-2022>,
Doblas-Reyes et al. (2005) <doi:10.1111/j.1600-0870.2005.00104.x>,
Mishra et al. (2018) <doi:10.1007/s00382-018-4404-z>,
Sanchez-Garcia et al. (2019) <doi:10.5194/asr-16-165-2019>,
Straus et al. (2007) <doi:10.1175/JCLI4070.1>,
Terzago et al. (2018) <doi:10.5194/nhess-18-2825-2018>,
Torralba et al. (2017) <doi:10.117 [...truncated...]
Author: Nuria Perez-Zanon [aut] ,
Louis-Philippe Caron [aut] ,
Carmen Alvarez-Castro [aut] ,
Lauriane Batte [aut],
Carlos Delgado [aut],
Jost von Hardenberg [aut] ,
Llorenc LLedo [aut],
Nicolau Manubens [aut],
Lluis Palma [aut],
Eroteida Sanchez-Garcia [aut] [...truncated...]
Maintainer: Victoria Agudetse <victoria.agudetse@bsc.es>
Diff between CSTools versions 5.3.1 dated 2026-03-17 and 5.3.2 dated 2026-05-28
DESCRIPTION | 8 - MD5 | 44 +++--- NEWS.md | 11 + R/CST_QuantileMapping.R | 105 ++++++++------- R/CST_Subset.R | 22 ++- build/partial.rdb |binary build/vignette.rds |binary data/lonlat_prec.rda |binary data/lonlat_prec_st.rda |binary data/lonlat_temp.rda |binary data/lonlat_temp_st.rda |binary inst/doc/Analogs_vignette.html | 199 ++++++++++++++++------------- inst/doc/BestEstimateIndex_vignette.html | 134 +++++++------------ inst/doc/Data_Considerations.html | 202 +++++++++++++++++------------- inst/doc/ENSclustering_vignette.html | 206 +++++++++++++++++------------- inst/doc/MostLikelyTercile_vignette.html | 202 +++++++++++++++++------------- inst/doc/MultiModelSkill_vignette.html | 198 ++++++++++++++++------------- inst/doc/MultivarRMSE_vignette.html | 194 ++++++++++++++++------------ inst/doc/PlotForecastPDF.html | 200 +++++++++++++++++------------ inst/doc/RainFARM_vignette.R | 182 +++++++++++++-------------- inst/doc/RainFARM_vignette.html | 199 ++++++++++++++++------------- inst/doc/WeatherRegimes_vignette.html | 208 +++++++++++++++++-------------- man/CST_Subset.Rd | 16 ++ 23 files changed, 1305 insertions(+), 1025 deletions(-)
Title: Spectral Modularity Clustering
Description: Implements the network clustering algorithm described in
Newman (2006) <doi:10.1103/PhysRevE.74.036104>. The complete
iterative algorithm comprises of two steps. In the first step, the
network is expressed in terms of its leading eigenvalue and
eigenvector and recursively partition into two communities.
Partitioning occurs if the maximum positive
eigenvalue is greater than the tolerance (10e-5) for the current
partition, and if it results in a positive contribution to the
Modularity.
Given an initial separation using the leading eigen step, 'rSpectral'
then continues to maximise for the change in Modularity using a
fine-tuning step - or variate thereof. The first stage here is to
find the node which, when moved from one community to another,
gives the maximum change in Modularity. This node’s community is
then fixed and we repeat the process until all nodes have been moved.
The whole process is repeated from this new state until the change
in the Modularity, between the new and o [...truncated...]
Author: Colin Mclean [aut] ,
Anatoly Sorokin [aut, cre]
Maintainer: Anatoly Sorokin <lptolik@gmail.com>
Diff between rSpectral versions 1.0.0.14 dated 2025-12-07 and 1.0.0.16 dated 2026-05-28
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/igraph.R | 6 +++++- build/partial.rdb |binary man/spectral_igraph_communities.Rd | 2 ++ man/spectral_igraph_membership.Rd | 2 ++ tests/testthat/test-igraph.R | 9 ++++++++- 7 files changed, 28 insertions(+), 13 deletions(-)
Title: Wrapper for MUMPS Library
Description: Some basic features of 'MUMPS' (Multifrontal Massively Parallel
sparse direct Solver) are wrapped in a class whose methods can be used
for sequentially solving a sparse linear system (symmetric or not)
with one or many right hand sides (dense or sparse).
There is a possibility to do separately symbolic analysis,
LU (or LDL^t) factorization and system solving.
Third part ordering libraries are included and can be used: 'PORD', 'METIS', 'SCOTCH'.
'MUMPS' method was first described in Amestoy et al. (2001) <doi:10.1137/S0895479899358194>
and Amestoy et al. (2006) <doi:10.1016/j.parco.2005.07.004>.
Author: Serguei Sokol [aut, cre],
Emmanuel Agullo [ctb],
Patrick Amestoy [ctb, cph],
Maurice Bremond [ctb],
Alfredo Buttari [ctb],
Philippe Combes [ctb],
Marie Durand [ctb],
Aurelia Fevre [ctb],
Abdou Guermouche [ctb],
Guillaume Joslin [ctb],
Jacko Koster [c [...truncated...]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between rmumps versions 5.2.1-42 dated 2026-05-26 and 5.2.1-43 dated 2026-05-28
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 11 ++++++++--- src/init.c | 3 ++- 4 files changed, 16 insertions(+), 10 deletions(-)
Title: Tidy Tools for Joinpoint Regression Models
Description: Provides tools to fit joinpoint regression models with a log-linear
specification by levels of a categorical variable. The package acts as a
wrapper around the 'segmented' package, facilitating model fitting, selection,
and interpretation. It includes functions to estimate the Annual Percent Change
(APC) and the Average Annual Percent Change (AAPC), along with their 95%
confidence intervals, and to generate formatted summary tables and plots of results.
Author: Tamara Ricardo [aut, cre]
Maintainer: Tamara Ricardo <tamararicardo83@gmail.com>
Diff between joinpointR versions 0.6.0 dated 2026-05-19 and 0.6.2 dated 2026-05-28
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 7 ++++--- R/model_jp.R | 9 +++++---- 4 files changed, 16 insertions(+), 14 deletions(-)
Title: Accessing FDIC Bank Data
Description: A system provides a set of functions for
working with data from the Federal Deposit Insurance Corporation
(FDIC), including retrieving financial data for FDIC-insured
institutions and accessing the data taxonomy.
Author: Ugur Dar [aut, cre],
Brian Pillmore [aut, cph]
Maintainer: Ugur Dar <ugurdarr@gmail.com>
This is a re-admission after prior archival of version 0.1.1 dated 2024-09-12
Diff between fdicdata versions 0.1.1 dated 2024-09-12 and 0.1.2 dated 2026-05-28
DESCRIPTION | 12 ++- MD5 | 63 ++++++++++--------- NAMESPACE | 5 + R/cert2idrssd.R | 32 ++++----- R/dataTaxonomy.R | 29 ++++---- R/getFailures.R | 18 +++-- R/getFinancials.R | 22 +++--- R/getHistory.R | 20 +++--- R/getInstitution.R | 19 +++-- R/getInstitutionsAll.R | 24 +++---- R/getLocation.R | 20 +++--- R/getSummary.R | 17 +++-- R/getTaxonomy.R | 29 ++++++-- R/utils_fetch.R |only README.md | 2 man/cert2idrssd.Rd | 5 + man/dataTaxonomy.Rd | 9 +- man/getFailures.Rd | 5 + man/getFinancials.Rd | 9 +- man/getHistory.Rd | 8 +- man/getInstitution.Rd | 5 + man/getInstitutionsAll.Rd | 11 ++- man/getLocation.Rd | 7 +- man/getSummary.Rd | 5 + man/getTaxonomy.Rd | 16 +++- man/idrssd2cert.Rd | 5 + tests/testthat/helper-skip.R |only tests/testthat/test-getFailures.R | 6 - tests/testthat/test-getFinancials.R | 102 +++++++++++++++---------------- tests/testthat/test-getHistory.R | 6 + tests/testthat/test-getInstitution.R | 8 +- tests/testthat/test-getInstitutionsAll.R |only tests/testthat/test-getLocation.R | 7 +- tests/testthat/test-getSummary.R | 6 + 34 files changed, 309 insertions(+), 223 deletions(-)
More information about cellkeyperturbation at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-03 0.1.21
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-07 1.0.0
2022-02-09 0.3.0
2020-10-21 0.2.6
2020-10-02 0.2.5
2018-12-18 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-13 0.9.6.2
2021-01-14 0.9.4
2020-09-02 0.9.2
2020-08-31 0.9.0
2020-08-28 0.8.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-13 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-06 1.2.0
2019-10-07 1.1.1
Title: Estimation and Inference for Boundary Discontinuity Designs
Description: Provides pointwise and uniform estimation and inference methods for boundary discontinuity (BD) designs,
a causal inference design that generalizes univariate regression discontinuity (RD) designs to settings with bivariate scores.
Implements local polynomial methods for location-based and distance-based analyses, including sharp and fuzzy designs,
data-driven bandwidth selection, pointwise confidence intervals, and uniform confidence bands. Methodology is developed in
Cattaneo, Titiunik, and Yu (2026) <doi:10.48550/arXiv.2505.05670> for location-based methods and
Cattaneo, Titiunik, and Yu (2026) <doi:10.48550/arXiv.2510.26051> for distance-based methods.
For an overview and empirical guidance, see Cattaneo, Titiunik, and Yu (2026) <doi:10.48550/arXiv.2511.06474>.
The companion software article is Cattaneo, Titiunik, and Yu (2025) <doi:10.48550/arXiv.2505.07989>.
Author: Matias D. Cattaneo [aut, cre],
Rocio Titiunik [aut],
Ruiqi Rae Yu [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between rd2d versions 0.2.0 dated 2026-05-23 and 1.0.0 dated 2026-05-28
DESCRIPTION | 6 MD5 | 41 - NAMESPACE | 10 NEWS.md | 25 R/rd2d-package.R | 6 R/rd2d.R | 359 ++++++-- R/rd2d_distance.R | 186 ++-- R/rd2d_distance_fn.R | 369 +++++++-- R/rd2d_fn.R | 1184 +++++++++++++++++++++-------- R/rd2d_methods.R |only R/rdbw2d.R | 259 +++++- R/rdbw2d_distance.R | 105 ++ man/coef.rd2d.Rd |only man/confint.rd2d.Rd |only man/plot.rd2d.Rd |only man/rd2d-package.Rd | 6 man/rd2d.Rd | 24 man/rd2d.distance.Rd | 22 man/rdbw2d.Rd | 30 man/rdbw2d.distance.Rd | 29 man/vcov.rd2d.Rd |only tests/testthat/test-distance-methods.R | 401 +++++++++ tests/testthat/test-numerical-regression.R | 532 ++++++++++++- tests/testthat/test-package.R | 101 +- 24 files changed, 2994 insertions(+), 701 deletions(-)
Title: Work with Microsoft Access Files
Description: Work with Microsoft Access '.mdb' and '.accdb' files using the
open source 'MDB Tools' library <https://github.com/mdbtools/mdbtools/>.
The library is compiled and bundled with the package, so no external
installation is required. Provides high-level helpers for reading tables,
exporting to CSV or JSON, inspecting table definitions, and running SQL queries.
Also exposes a full read-only 'DBI' interface for use with standard
database workflows.
Author: Kiernan Nicholls [aut, cre, cph] ,
Bruno Tremblay [ctb]
Maintainer: Kiernan Nicholls <k5cents@gmail.com>
Diff between mdbr versions 0.3.0 dated 2026-05-23 and 0.3.1 dated 2026-05-28
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 2 ++ src/Makevars.in | 2 +- src/mdb_native.c | 7 +++++-- src/mdbtools/include/mdbtools.h | 4 ++++ 6 files changed, 20 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-27 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-25 2.2.2
2026-05-15 2.2.1
2026-04-22 2.2.0
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Description: Contains functions for multiple imputation which
complements existing functionality in R.
In particular, several imputation methods for the
mice package (van Buuren & Groothuis-Oudshoorn, 2011,
<doi:10.18637/jss.v045.i03>) are implemented.
Main features of the miceadds package include
plausible value imputation (Mislevy, 1991,
<doi:10.1007/BF02294457>), multilevel imputation for
variables at any level or with any number of hierarchical
and non-hierarchical levels (Grund, Luedtke & Robitzsch,
2018, <doi:10.1177/1094428117703686>; van Buuren, 2018,
Ch.7, <doi:10.1201/9780429492259>), imputation using
partial least squares (PLS) for high dimensional
predictors (Robitzsch, Pham & Yanagida, 2016),
nested multiple imputation (Rubin, 2003,
<doi:10.1111/1467-9574.00217>), substantive model
compatible imputation (Bartlett et al., 2015,
<doi:10.1177/0962280214521348>), and features
for the generation of synthetic datasets
(Reiter, 2005, <doi:10. [...truncated...]
Author: Alexander Robitzsch [aut, cre] ,
Simon Grund [aut] ,
Thorsten Henke [ctb]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between miceadds versions 3.19-16 dated 2026-03-13 and 3.20-10 dated 2026-05-28
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/RcppExports.R | 2 +- R/mice.impute.pls.R | 4 ++-- R/mice_imputation_extract_list_arguments.R | 5 ++++- R/mice_imputation_pls_estimate_pls_regression.R | 11 +++-------- build/partial.rdb |binary inst/NEWS | 11 +++++++++++ src/RcppExports.cpp | 2 +- 9 files changed, 34 insertions(+), 25 deletions(-)
Title: Monte Carlo Maximum Likelihood and Analysis of Generalised
Linear Mixed Models
Description: Specification, analysis, simulation, and fitting of generalised linear mixed models.
Monte Carlo Maximum likelihood model fitting for a range of models,
non-linear fixed effect specifications, a wide range of flexible covariance functions including
Gaussian Process approximations. Methods described in Watson, Wang, and Giorgi (2026) <doi:10.48550/arXiv.2601.16022>.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
This is a re-admission after prior archival of version 1.4.0 dated 2026-04-29
Diff between glmmrBase versions 1.4.0 dated 2026-04-29 and 1.4.1 dated 2026-05-28
DESCRIPTION | 21 +++++++------ MD5 | 22 +++++++------- R/R6Model.R | 10 +++--- R/R6covariance.R | 28 +---------------- R/R6meanfunction.R | 3 - R/lme4_functions.R | 55 ++++++++++++++++++----------------- build/partial.rdb |binary inst/include/glmmr/randomeffects.hpp | 2 - man/Model.Rd | 17 +++++++--- man/mcml_glmer.Rd | 17 +++------- man/mcml_lmer.Rd | 13 +++----- src/model_module.cpp | 2 - 12 files changed, 84 insertions(+), 106 deletions(-)
Title: Comparing and Visualizing Differences Between Surveys
Description: Easily analyze and visualize differences between samples (e.g., benchmark comparisons, nonresponse comparisons in surveys) on three levels. The comparisons can be univariate, bivariate or multivariate. On univariate level the variables of interest of a survey and a comparison survey (i.e. benchmark) are compared, by calculating one of several difference measures (e.g., relative difference in mean), and an average difference between the surveys. On bivariate level a function can calculate significant differences in correlations for the surveys. And on multivariate levels a function can calculate significant differences in model coefficients between the surveys of comparison. All of those differences can be easily plotted and outputted as a table. For more detailed information on the methods and example use see Rohr, B., Silber, H., & Felderer, B. (2024). Comparing the Accuracy of Univariate, Bivariate, and Multivariate Estimates across Probability and Nonprobability Surveys with Po [...truncated...]
Author: Bjoern Rohr [aut, cre, cph],
Barbara Felderer [aut]
Maintainer: Bjoern Rohr <bjoern.rohr@gesis.org>
Diff between sampcompR versions 0.3.2 dated 2025-12-09 and 0.3.3 dated 2026-05-28
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/Multidiff.R | 5 ++--- R/Multidiff_Plot.R | 22 +++++++++++----------- 5 files changed, 24 insertions(+), 21 deletions(-)
Title: Plotting Functions for Climate Science and Services
Description: A plotting package for climate science and services. Provides a set
of functions for visualizing climate data, including maps, time series,
scorecards and other diagnostics. Some functions are adapted and extended
from the 's2dv' and 'CSTools' packages (Manubens et al. (2018)
<doi:10.1016/j.envsoft.2018.01.018>; Pérez-Zanón et al. (2022)
<doi:10.5194/gmd-15-6115-2022>), with more consistent and integrated
functionalities.
Author: BSC-CNS [aut, cph],
An-Chi Ho [aut],
Eva Rifa [ctb],
Victoria Agudetse [ctb],
Ariadna Batalla [ctb, cre],
Nuria Perez-Zanon [ctb],
Nadia Milders [ctb],
Veronica Torralba [ctb],
Raul Capellan [ctb],
Anindita Patra [ctb]
Maintainer: Ariadna Batalla <ariadna.batalla@bsc.es>
Diff between esviz versions 0.0.2 dated 2026-02-04 and 0.0.3 dated 2026-05-28
DESCRIPTION | 8 +++--- MD5 | 14 ++++++---- NAMESPACE | 5 +++ NEWS.md | 10 +++++++ R/VizCombinedMap.R | 64 +++++++++++++++++++++++++++++++++++++++++++++----- R/VizEquiMap.R | 51 ++++++++++++++++++++++++++------------- R/VizPolygonsMap.R |only R/VizRobinson.R | 1 man/VizPolygonsMap.Rd |only 9 files changed, 120 insertions(+), 33 deletions(-)
Title: Ecological Niche Modeling using Presence-Absence Data
Description: A set of tools to perform Ecological Niche Modeling with
presence-absence data. It includes algorithms for data partitioning,
model fitting, calibration, evaluation, selection, and prediction.
Other functions help to explore signals of ecological niche using univariate
and multivariate analyses, and model features such as variable response
curves and variable importance. Unique characteristics of this package are
the ability to exclude models with concave quadratic responses, and the
option to clamp model predictions to specific variables. These tools are
implemented following principles proposed in
Cobos et al., (2022) <doi:10.17161/bi.v17i.15985>,
Cobos et al., (2019) <doi:10.7717/peerj.6281>,
and Peterson et al., (2008) <doi:10.1016/j.ecolmodel.2007.11.008>.
Author: Luis F. Arias-Giraldo [aut, cre] ,
Marlon E. Cobos [aut] ,
A. Townsend Peterson [ctb]
Maintainer: Luis F. Arias-Giraldo <lfarias.giraldo@gmail.com>
Diff between enmpa versions 0.2.3 dated 2026-01-26 and 0.2.4 dated 2026-05-28
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 6 ++++++ man/enmpa.Rd | 1 + src/trap_roc.cpp | 2 +- 5 files changed, 17 insertions(+), 10 deletions(-)
Title: Network Meta-Analysis using Frequentist Methods
Description: A comprehensive set of functions providing frequentist methods for network meta-analysis (Balduzzi et al., 2023) <doi:10.18637/jss.v106.i02> and supporting Schwarzer et al. (2015) <doi:10.1007/978-3-319-21416-0>, Chapter 8 "Network Meta-Analysis":
- frequentist network meta-analysis following Rücker (2012) <doi:10.1002/jrsm.1058>;
- additive network meta-analysis for combinations of treatments (Rücker et al., 2020) <doi:10.1002/bimj.201800167>;
- network meta-analysis of binary data using the Mantel-Haenszel or non-central hypergeometric distribution method (Efthimiou et al., 2019) <doi:10.1002/sim.8158>, or penalised logistic regression (Evrenoglou et al., 2022) <doi:10.1002/sim.9562>;
- rankograms and ranking of treatments by the Surface under the cumulative ranking curve (SUCRA) (Salanti et al., 2013) <doi:10.1016/j.jclinepi.2010.03.016>;
- ranking of treatments using P-scores (frequentist analogue of SUCRAs without resampling) according to [...truncated...]
Author: Gerta Ruecker [aut] ,
Ulrike Krahn [aut],
Jochem Koenig [aut] ,
Orestis Efthimiou [aut] ,
Annabel Davies [aut] ,
Theodoros Papakonstantinou [aut] ,
Theodoros Evrenoglou [ctb] ,
Krzysztof Ciomek [ctb] ,
Nana-adjoa Kwarteng [ctb] ,
Guido Schwarzer [aut, [...truncated...]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between netmeta versions 3.4-0 dated 2026-04-11 and 3.5-0 dated 2026-05-28
DESCRIPTION | 22 ++-- MD5 | 73 +++++++-------- NAMESPACE | 15 +++ NEWS.md | 22 ++++ R/decomp.design.R | 2 R/forest.netsplit.R | 13 -- R/formatCC.R | 2 R/formatComp.R | 2 R/is.installed.package.R | 3 R/netcomparison.R | 2 R/netcomplex.R | 2 R/netconnection.R | 3 R/netdistance.R | 3 R/netmeta-package.R | 71 +++++++------- R/netmetabin.R | 6 - R/netmetareg-internal.R | 4 R/netmetareg.R | 155 ++++++++++++++++++++++++++------ R/netsplit.R | 28 ++++- R/optcircle.R | 128 ++++++++++++-------------- R/plot.netsplit.R |only R/print.netcomb.R | 2 R/print.netmeta.R | 6 - R/print.summary.netmeta.R | 2 R/subgroup.netmeta.R | 2 R/summary.netcomb.R | 2 R/summary.netmeta.R | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/netmeta-workflow.pdf |binary inst/doc/netmeta.pdf |binary man/decomp.design.Rd | 2 man/forest.netsplit.Rd | 5 - man/netmeta-package.Rd | 24 ++++ man/netmetabin.Rd | 2 man/netmetareg.Rd | 123 +++++++++++++++++++++---- man/netsplit.Rd | 24 ++++ man/plot.netsplit.Rd |only vignettes/netmeta-workflow-diagram.pdf |binary vignettes/netmeta-workflow-diagram.pptx |binary 39 files changed, 512 insertions(+), 240 deletions(-)
Title: Analyzing Gene Tree Quartets under the Multi-Species Coalescent
Description: Methods for analyzing and using quartets displayed on a collection
of gene trees, primarily to make inferences about the species tree or network
under the multi-species coalescent model. These include quartet hypothesis tests
for the model, as developed by Mitchell et al. (2019) <doi:10.1214/19-EJS1576>,
simplex plots of quartet concordance factors as presented by Allman et al. (2020)
<doi:10.1101/2020.02.13.948083>, species tree inference methods based on quartet
distances of Rhodes (2019) <doi:10.1109/TCBB.2019.2917204> and Yourdkhani and
Rhodes (2019) <doi:10.1007/s11538-020-00773-4>, the NANUQ algorithm for inference
of level-1 species networks of Allman et al. (2019) <doi:10.1186/s13015-019-0159-2>,
the TINNIK algorithm for inference of the tree of blobs of an arbitrary
network of Allman et al.(2022) <doi:10.1007/s00285-022-01838-9>,
NANUQ+ routines for resolving multifurcations in the tree of blobs to cycles as in
Rhodes et al.(2024) <doi:10 [...truncated...]
Author: Elizabeth Allman [aut],
Hector Banos [aut],
Jonathan Mitchell [aut],
Kristina Wicke [aut],
John Rhodes [aut, cre]
Maintainer: John Rhodes <j.rhodes@alaska.edu>
Diff between MSCquartets versions 3.2 dated 2025-03-19 and 3.3 dated 2026-05-28
DESCRIPTION | 18 +-- LICENSE | 2 MD5 | 77 ++++++++------ NAMESPACE | 9 + R/ECToBlob.R |only R/MSCquartets-package.R | 38 +++++- R/NANUQ.R | 54 ++++----- R/ToBtoLevel1.R | 24 ++-- R/TreeOfBlobs.R | 186 ++++++++++++++++++---------------- R/TreeQuartetHypTest.R | 62 ++++++++--- R/quartetDistTree.R |only build/partial.rdb |binary build/vignette.rds |binary data/ASTRALtreeLeopardusLescroart.rda |only data/tableHeliconiusMartin.rda |binary inst/REFERENCES.bib | 71 +++++++++--- inst/doc/ECToBlob.R |only inst/doc/ECToBlob.Rmd |only inst/doc/ECToBlob.html |only inst/doc/NANUQplus.html | 57 ++++------ inst/doc/TINNIK.html | 35 +++--- man/ASTRALtreeLeopardusLescroart.Rd |only man/ECToBlob.Rd |only man/ECToBlob_bi.Rd |only man/ECToBlob_mul.Rd |only man/ECToBlob_quad.Rd |only man/M0.Rd | 7 - man/MSCquartets-package.Rd | 8 - man/NANUQ.Rd | 8 - man/NANUQdist.Rd | 10 - man/TINNIK.Rd | 6 - man/combineCycleResolutions.Rd | 2 man/combineP.Rd |only man/compatibleSplits.Rd | 2 man/dataYeastRokas.Rd | 2 man/ordersHeuristicmodNANUQ.Rd | 2 man/pTableYeastRokas.Rd | 2 man/quartetCutTest.Rd | 2 man/quartetDistTree.Rd |only man/quartetECtestInd.Rd |only man/quartetNetworkDist.Rd | 2 man/quartetTestPlot.Rd | 15 +- man/resolveCycle.Rd | 8 - man/resolveLevel1.Rd | 11 -- man/tableHeliconiusMartin.Rd | 3 man/treeFromSplits.Rd | 2 vignettes/ECToBlob.Rmd |only 47 files changed, 427 insertions(+), 298 deletions(-)
Title: Unified S3 Interface to Machine Learning Models
Description: Provides a unified and consistent S3 interface for training and predicting with a variety of machine learning models in R. The package wraps popular algorithms (e.g., from 'glmnet', 'lightgbm', 'ranger', 'e1071', and 'caret') under a common workflow based on simple wrap_*() and predict() functions, allowing users to switch between models without changing their code structure. It supports both classification and regression tasks and facilitates rapid experimentation, benchmarking, and comparison of models. By abstracting away package-specific APIs while preserving flexibility in parameter specification, the package streamlines machine learning workflows and promotes reproducibility.
Author: T. Moudiki [aut, cre]
Maintainer: T. Moudiki <thierry.moudiki@gmail.com>
Diff between mlS3 versions 0.1.0 dated 2026-04-28 and 0.1.1 dated 2026-05-28
DESCRIPTION | 7 ++++--- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/wrap_caret.R | 6 +++--- R/wrap_lightgbm.R | 6 ++++++ README.md | 25 +++++++++++-------------- man/wrap_caret.Rd | 4 ++-- man/wrap_lightgbm.Rd | 15 +++++++++++++++ 8 files changed, 54 insertions(+), 29 deletions(-)
Title: Turn Geospatial Polygons into Regular or Hexagonal Grids
Description: Turn irregular polygons (such as geographical regions) into regular or hexagonal grids.
This package enables the generation of regular (square) and hexagonal grids through the package
'sp' and then assigns the content of the existing polygons to the new grid using
the Hungarian algorithm, Kuhn (1955) (<doi:10.1007/978-3-540-68279-0_2>).
This prevents the need for manual generation of hexagonal grids or regular grids
that are supposed to reflect existing geography.
Author: Joseph Bailey [aut, cph],
Ryan Hafen [ctb, cre] ,
Jakub Nowosad [ctb] ,
Lars Simon Zehnder [ctb]
Maintainer: Ryan Hafen <rhafen@gmail.com>
Diff between geogrid versions 0.1.2 dated 2023-08-19 and 0.1.3 dated 2026-05-28
DESCRIPTION | 15 ++++++++------- MD5 | 14 +++++++------- R/assign_polygons.R | 2 +- R/calculate_grid.R | 2 +- README.md | 10 ++++------ build/partial.rdb |binary man/assign_polygons.Rd | 2 +- man/calculate_grid.Rd | 2 +- 8 files changed, 23 insertions(+), 24 deletions(-)
Title: Analysis Results Data
Description: Construct CDISC (Clinical Data Interchange Standards
Consortium) compliant Analysis Results Data objects. These objects are
used and re-used to construct summary tables, visualizations, and
written reports. The package also exports utilities for working with
these objects and creating new Analysis Results Data objects.
Author: Daniel D. Sjoberg [aut, cre] ,
Becca Krouse [aut],
Emily de la Rua [aut] ,
Malan Bosman [aut] ,
F. Hoffmann-La Roche AG [cph, fnd],
GlaxoSmithKline Research & Development Limited [cph]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between cards versions 0.7.1 dated 2025-12-02 and 0.8.0 dated 2026-05-28
DESCRIPTION | 8 - MD5 | 118 ++++++++++++----------- NAMESPACE | 5 NEWS.md | 26 +++++ R/add_calculated_row.R | 2 R/ard_attributes.R | 2 R/ard_formals.R | 2 R/ard_hierarchical.R | 30 ++++- R/ard_missing.R | 18 ++- R/ard_mvsummary.R | 30 ++++- R/ard_pairwise.R | 6 + R/ard_stack_hierarchical.R | 6 - R/ard_strata.R | 12 +- R/ard_summary.R | 18 ++- R/ard_tabulate.R | 48 +++++++-- R/ard_tabulate_rows.R |only R/ard_tabulate_value.R | 19 ++- R/as_card.R | 29 ++++- R/bind_ard.R | 2 R/check_ard_structure.R | 40 ++++++- R/compare_ard.R |only R/compare_ard_helpers.R |only R/deprecated.R | 14 +- R/filter_ard_hierarchical.R | 18 +-- R/mock.R | 4 R/nest_for_ard.R | 11 +- R/print.R | 46 ++++++++ R/rename_ard_columns.R | 20 +++ R/sort_ard_hierarchical.R | 16 +-- R/tidy_as_ard.R | 2 R/utils.R | 33 ++++++ inst/WORDLIST | 2 man/ard_tabulate_rows.Rd |only man/as_card.Rd | 15 ++ man/cards-package.Rd | 1 man/check_ard_structure.Rd | 10 + man/compare_ard.Rd |only man/dot-message_or_error.Rd |only man/print.card.Rd | 3 man/reexports.Rd | 2 man/rename_ard_columns.Rd | 7 + tests/testthat/_snaps/ard_tabulate.md | 8 + tests/testthat/_snaps/ard_tabulate_rows.md |only tests/testthat/_snaps/as_card.md | 12 +- tests/testthat/_snaps/check_ard_structure.md | 42 ++++++++ tests/testthat/_snaps/filter_ard_hierarchical.md | 5 tests/testthat/_snaps/sort_ard_hierarchical.md | 9 - tests/testthat/test-ard_hierarchical.R | 26 +++++ tests/testthat/test-ard_missing.R | 13 ++ tests/testthat/test-ard_mvsummary.R | 21 +++- tests/testthat/test-ard_pairwise.R | 24 ++++ tests/testthat/test-ard_stack_hierarchical.R | 42 +++++--- tests/testthat/test-ard_strata.R | 28 ++++- tests/testthat/test-ard_summary.R | 82 +++++++++++---- tests/testthat/test-ard_tabulate.R | 90 +++++++++++++---- tests/testthat/test-ard_tabulate_rows.R |only tests/testthat/test-ard_tabulate_value.R | 24 +++- tests/testthat/test-as_card.R | 36 ++++++- tests/testthat/test-check_ard_structure.R | 62 ++++++++++++ tests/testthat/test-compare_ard.R |only tests/testthat/test-filter_ard_hierarchical.R | 6 - tests/testthat/test-nest_for_ard.R | 12 ++ tests/testthat/test-rename_ard_columns.R | 33 ++++++ tests/testthat/test-sort_ard_hierarchical.R | 7 - tests/testthat/test-utils.R |only 65 files changed, 976 insertions(+), 231 deletions(-)
Title: Bayesian Model Selection Approach for Parsimonious Gaussian
Mixture Models
Description: Model-based clustering using Bayesian parsimonious Gaussian mixture models.
MCMC (Markov chain Monte Carlo) are used for parameter estimation. The RJMCMC (Reversible-jump Markov chain Monte Carlo) is used for model selection.
GREEN et al. (1995) <doi:10.1093/biomet/82.4.711>.
Author: Yaoxiang Li [aut, cre],
Xiang Lu [aut],
Tanzy Love [aut]
Maintainer: Yaoxiang Li <liyaoxiang@outlook.com>
Diff between bpgmm versions 1.1.1 dated 2025-10-30 and 1.3.1 dated 2026-05-28
bpgmm-1.1.1/bpgmm/R/PGMMmain.R |only bpgmm-1.1.1/bpgmm/R/choosem |only bpgmm-1.1.1/bpgmm/R/hyperParamClass.R |only bpgmm-1.1.1/bpgmm/R/paramClass.R |only bpgmm-1.1.1/bpgmm/R/pgmmMstep.R |only bpgmm-1.1.1/bpgmm/R/pgmmStay.R |only bpgmm-1.1.1/bpgmm/R/pgmmVstep.R |only bpgmm-1.1.1/bpgmm/R/pkgData.R |only bpgmm-1.1.1/bpgmm/R/posteriorZ.R |only bpgmm-1.1.1/bpgmm/R/proposalLambda.R |only bpgmm-1.1.1/bpgmm/R/proposalPsi.R |only bpgmm-1.1.1/bpgmm/R/sourceR.R |only bpgmm-1.1.1/bpgmm/R/summerizeRes.R |only bpgmm-1.1.1/bpgmm/R/updatePostThetaY.R |only bpgmm-1.1.1/bpgmm/man/CalculateProposalLambda.Rd |only bpgmm-1.1.1/bpgmm/man/CalculateProposalPsy.Rd |only bpgmm-1.1.1/bpgmm/man/EvaluateProposalLambda.Rd |only bpgmm-1.1.1/bpgmm/man/generatePriorLambda.Rd |only bpgmm-1.1.1/bpgmm/man/generatePriorPsi.Rd |only bpgmm-1.1.1/bpgmm/man/generatePriorThetaY.Rd |only bpgmm-1.1.1/bpgmm/man/pgmmRJMCMC.Rd |only bpgmm-1.1.1/bpgmm/man/stayMCMCupdate.Rd |only bpgmm-1.1.1/bpgmm/man/summerizePgmmRJMCMC.Rd |only bpgmm-1.1.1/bpgmm/man/toEthetaYlist.Rd |only bpgmm-1.1.1/bpgmm/src/calculateCxy.cpp |only bpgmm-1.1.1/bpgmm/src/calculatePostLambdaPsy.cpp |only bpgmm-1.1.1/bpgmm/src/calculatePostLambdaPsy.h |only bpgmm-1.1.1/bpgmm/src/updatePostZ.cpp |only bpgmm-1.1.1/bpgmm/src/update_Hyperparameter.cpp |only bpgmm-1.3.1/bpgmm/DESCRIPTION | 31 ++-- bpgmm-1.3.1/bpgmm/MD5 | 131 +++++++++++----- bpgmm-1.3.1/bpgmm/NAMESPACE | 5 bpgmm-1.3.1/bpgmm/NEWS.md |only bpgmm-1.3.1/bpgmm/R/RcppExports.R | 40 +++-- bpgmm-1.3.1/bpgmm/R/choosem-combine.R |only bpgmm-1.3.1/bpgmm/R/choosem-proposal-functions.R |only bpgmm-1.3.1/bpgmm/R/choosem-split.R |only bpgmm-1.3.1/bpgmm/R/class-hparam.R |only bpgmm-1.3.1/bpgmm/R/class-theta-y.R |only bpgmm-1.3.1/bpgmm/R/constraints.R |only bpgmm-1.3.1/bpgmm/R/dev-source.R |only bpgmm-1.3.1/bpgmm/R/internal-rcpp-aliases.R |only bpgmm-1.3.1/bpgmm/R/parallel-utils.R |only bpgmm-1.3.1/bpgmm/R/pgmm-chains.R |only bpgmm-1.3.1/bpgmm/R/pgmm-m-step.R |only bpgmm-1.3.1/bpgmm/R/pgmm-main.R |only bpgmm-1.3.1/bpgmm/R/pgmm-stay.R |only bpgmm-1.3.1/bpgmm/R/pgmm-v-step.R |only bpgmm-1.3.1/bpgmm/R/pkg-data.R |only bpgmm-1.3.1/bpgmm/R/posterior-z.R |only bpgmm-1.3.1/bpgmm/R/prior.R | 138 ++++------------- bpgmm-1.3.1/bpgmm/R/proposal-lambda.R |only bpgmm-1.3.1/bpgmm/R/proposal-psi.R |only bpgmm-1.3.1/bpgmm/R/summarize-result.R |only bpgmm-1.3.1/bpgmm/R/update-post-theta-y.R |only bpgmm-1.3.1/bpgmm/R/utils.R | 118 +++++++++------ bpgmm-1.3.1/bpgmm/R/zzz.R | 19 +- bpgmm-1.3.1/bpgmm/README.md |only bpgmm-1.3.1/bpgmm/build |only bpgmm-1.3.1/bpgmm/inst |only bpgmm-1.3.1/bpgmm/man/Hparam-class.Rd | 17 +- bpgmm-1.3.1/bpgmm/man/ThetaYList.Rd | 15 + bpgmm-1.3.1/bpgmm/man/constraint_to_model.Rd |only bpgmm-1.3.1/bpgmm/man/model_to_constraint.Rd |only bpgmm-1.3.1/bpgmm/man/pgmm_rjmcmc.Rd |only bpgmm-1.3.1/bpgmm/man/pgmm_rjmcmc_chains.Rd |only bpgmm-1.3.1/bpgmm/man/summarize_pgmm_rjmcmc.Rd |only bpgmm-1.3.1/bpgmm/src/Makevars | 7 bpgmm-1.3.1/bpgmm/src/Makevars.win | 3 bpgmm-1.3.1/bpgmm/src/RcppExports.cpp | 155 +++++++++++++------- bpgmm-1.3.1/bpgmm/src/calculate_cxy.cpp |only bpgmm-1.3.1/bpgmm/src/calculate_post_lambda_psi.cpp |only bpgmm-1.3.1/bpgmm/src/calculate_post_lambda_psi.h |only bpgmm-1.3.1/bpgmm/src/prior_evaluators.cpp |only bpgmm-1.3.1/bpgmm/src/update_hyperparameter.cpp |only bpgmm-1.3.1/bpgmm/src/update_latent_scores.cpp |only bpgmm-1.3.1/bpgmm/src/update_post_z.cpp |only bpgmm-1.3.1/bpgmm/src/utils.cpp | 126 ++++++++++++++-- bpgmm-1.3.1/bpgmm/src/utils.h | 88 ++++++++--- bpgmm-1.3.1/bpgmm/tests |only bpgmm-1.3.1/bpgmm/vignettes |only 81 files changed, 557 insertions(+), 336 deletions(-)
Title: Import, Manipulate and Explore the Results of an 'Antares'
Simulation
Description: Import, manipulate and explore results generated by 'Antares', a
powerful open source software developed by RTE (Réseau de Transport d’Électricité) to simulate and study electric power systems
(more information about 'Antares' here : <https://antares-simulator.org/>).
Author: Tatiana Vargas [aut, cre],
Jalal-Edine ZAWAM [aut],
Frederic Breant [ctb],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
Victor Perrier [ctb],
Etienne Sanchez [ctb],
Assil Mansouri [ctb],
Clement Berthet [ctb],
Kamel Kemiha [c [...truncated...]
Maintainer: Tatiana Vargas <tatiana.vargas@rte-france.com>
Diff between antaresRead versions 3.0.0 dated 2026-01-28 and 3.0.1 dated 2026-05-28
DESCRIPTION | 6 MD5 | 16 + NEWS.md | 6 R/importOutput.R | 78 +++++--- R/setSimulationPathAPI.R | 18 +- inst/doc/antaresRead.html | 4 inst/format_output/simulation_variables_names_by_support.csv | 7 tests/testthat/test-importOutput.R |only tests/testthat/test-importOutputForClusters.R | 98 ----------- tests/testthat/test-setSimulationPathAPI.R |only 10 files changed, 84 insertions(+), 149 deletions(-)
Title: Seeded Sequential LDA for Topic Modeling
Description: Seeded Sequential LDA can classify sentences of texts into pre-define topics with a small number of seed words (Watanabe & Baturo, 2023) <doi:10.1177/08944393231178605>.
Implements Seeded LDA (Lu et al., 2010) <doi:10.1109/ICDMW.2011.125> and Sequential LDA (Du et al., 2012) <doi:10.1007/s10115-011-0425-1> with the distributed LDA algorithm (Newman, et al., 2009) for parallel computing.
Author: Kohei Watanabe [aut, cre, cph],
Phan Xuan-Hieu [aut, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between seededlda versions 1.4.3 dated 2025-09-28 and 1.4.4 dated 2026-05-28
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/lda.R | 4 ++-- R/seededlda.R | 4 ++-- R/seqlda.R | 4 ++-- man/textmodel_lda.Rd | 4 ++-- man/textmodel_seededlda.Rd | 4 ++-- man/textmodel_seqlda.Rd | 4 ++-- tests/testthat/test-utils.R | 2 +- 10 files changed, 29 insertions(+), 25 deletions(-)
Title: Forest Spatial Structure Analysis Systems
Description: Recent years have seen significant interest in neighborhood-based structural parameters that effectively represent the spatial characteristics of tree populations and forest communities, and possess strong applicability for guiding forestry practices. This package provides valuable information that enhances our understanding and analysis of the fine-scale spatial structure of tree populations and forest stands. Reference: Yan L, Tan W, Chai Z, et al (2019) <doi:10.13323/j.cnki.j.fafu(nat.sci.).2019.03.007>.
Author: Zongzheng Chai [aut, cre]
Maintainer: Zongzheng Chai <chaizz@126.com>
Diff between forestSAS versions 2.0.4 dated 2024-11-11 and 2.0.5 dated 2026-05-28
DESCRIPTION | 12 +++++++----- MD5 | 14 +++++++++----- R/forestSAS_simapp.R |only R/ggrosechart.R |only R/simtreecom.R | 8 ++++---- R/storeydvd.R | 2 +- build/partial.rdb |binary man/forestSAS_simapp.Rd |only man/ggrosechart.Rd |only man/storeydvd.Rd | 2 +- 10 files changed, 22 insertions(+), 16 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-25 0.1.4
2020-02-06 0.1.3
2019-12-10 0.1.2
2019-10-09 0.1.1
2019-05-17 0.1.0
Title: Spatial Regression Models for Large Datasets using Nearest
Neighbor Gaussian Processes
Description: Fits univariate Bayesian spatial regression models for large datasets using Nearest Neighbor Gaussian Processes (NNGP) detailed in Finley, Datta, Banerjee (2022) <doi:10.18637/jss.v103.i05>, Finley, Datta, Cook, Morton, Andersen, and Banerjee (2019) <doi:10.1080/10618600.2018.1537924>, and Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091>.
Author: Andrew Finley [aut, cre],
Abhirup Datta [aut],
Sudipto Banerjee [aut]
Maintainer: Andrew Finley <finleya@msu.edu>
Diff between spNNGP versions 1.0.1 dated 2024-09-23 and 1.0.2 dated 2026-05-28
DESCRIPTION | 14 ++++++---- MD5 | 13 +++++---- R/spNNGP.R | 24 ++++++++++++++++- README.md |only build/partial.rdb |binary src/sNNGP.cpp | 71 ++++++++++++++++++++++++++++++++++++----------------- src/sNNGPLogit.cpp | 71 ++++++++++++++++++++++++++++++++++++----------------- tests |only 8 files changed, 137 insertions(+), 56 deletions(-)
Title: Univariate and Multivariate Spatial-Temporal Modeling
Description: Fits univariate and multivariate spatio-temporal
random effects models for point-referenced data using Markov chain Monte Carlo (MCMC). Details are given in Finley, Banerjee, and Gelfand (2015) <doi:10.18637/jss.v063.i13> and Finley and Banerjee <doi:10.1016/j.envsoft.2019.104608>.
Author: Andrew Finley [aut, cre],
Sudipto Banerjee [aut]
Maintainer: Andrew Finley <finleya@msu.edu>
Diff between spBayes versions 0.4-8 dated 2024-09-23 and 0.4-9 dated 2026-05-28
DESCRIPTION | 17 ++++++++++------- MD5 | 12 ++++++++++-- README.md |only inst/figures |only man/SVCMvData.dat.Rd | 3 +-- man/figures |only tests |only 7 files changed, 21 insertions(+), 11 deletions(-)
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation ('ODE') models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
'VODE' and 'LSODA' are in the public domain. The information is available
in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [aut],
Alan Hindmarsh [ctb],
Arun Srinivasan [ctb],
Awad H. Al-Mohy [ctb],
Bill Denney [ctb] ,
Cleve Moler [ctb],
David Cooley [ctb],
Drew Schmidt [ctb],
Ernst Hairer [ctb],
Gabriel Staples [ctb],
Gerhard W [...truncated...]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2 versions 5.0.2 dated 2026-03-20 and 5.1.1 dated 2026-05-28
rxode2-5.0.2/rxode2/tests/testthat/_problems |only rxode2-5.0.2/rxode2/tests/testthat/testthat-problems.rds |only rxode2-5.1.1/rxode2/DESCRIPTION | 15 rxode2-5.1.1/rxode2/MD5 | 421 rxode2-5.1.1/rxode2/NAMESPACE | 57 rxode2-5.1.1/rxode2/NEWS.md | 91 rxode2-5.1.1/rxode2/R/DollarNames.R | 17 rxode2-5.1.1/rxode2/R/RcppExports.R | 92 rxode2-5.1.1/rxode2/R/confint.R | 36 rxode2-5.1.1/rxode2/R/d.R | 14 rxode2-5.1.1/rxode2/R/err-sim.R | 52 rxode2-5.1.1/rxode2/R/et-helpers.R |only rxode2-5.1.1/rxode2/R/et-methods.R |only rxode2-5.1.1/rxode2/R/et.R | 1539 - rxode2-5.1.1/rxode2/R/etNew.R |only rxode2-5.1.1/rxode2/R/etTran.R | 66 rxode2-5.1.1/rxode2/R/etVctrs.R |only rxode2-5.1.1/rxode2/R/evidPush.R |only rxode2-5.1.1/rxode2/R/genShinyApp.template.R | 9 rxode2-5.1.1/rxode2/R/getBaseSim.R | 7 rxode2-5.1.1/rxode2/R/localOptions.R |only rxode2-5.1.1/rxode2/R/parseFuns.R | 10 rxode2-5.1.1/rxode2/R/plogis.R |only rxode2-5.1.1/rxode2/R/print.R | 70 rxode2-5.1.1/rxode2/R/rudfui.R | 92 rxode2-5.1.1/rxode2/R/rxLinCmt.R | 439 rxode2-5.1.1/rxode2/R/rxMemoryEstimate.R |only rxode2-5.1.1/rxode2/R/rxSerialize.R |only rxode2-5.1.1/rxode2/R/rxStack.R | 2 rxode2-5.1.1/rxode2/R/rxUiGet.R | 3 rxode2-5.1.1/rxode2/R/rxode-options.R | 5 rxode2-5.1.1/rxode2/R/rxode2.R | 10 rxode2-5.1.1/rxode2/R/rxode2_md5.R | 2 rxode2-5.1.1/rxode2/R/rxrandom.R | 2 rxode2-5.1.1/rxode2/R/rxsolve.R | 813 rxode2-5.1.1/rxode2/R/splitBolus.R |only rxode2-5.1.1/rxode2/R/symengine.R | 13 rxode2-5.1.1/rxode2/R/tran.R | 6 rxode2-5.1.1/rxode2/R/utils.R | 31 rxode2-5.1.1/rxode2/build/partial.rdb |binary rxode2-5.1.1/rxode2/build/vignette.rds |binary rxode2-5.1.1/rxode2/data/rxReservedKeywords.rda |binary rxode2-5.1.1/rxode2/data/rxResidualError.rda |binary rxode2-5.1.1/rxode2/data/rxSyntaxFunctions.rda |binary rxode2-5.1.1/rxode2/inst/doc/rxode2-syntax.Rmd | 3 rxode2-5.1.1/rxode2/inst/doc/rxode2-syntax.html | 43 rxode2-5.1.1/rxode2/inst/include/rxMemoryCalc.h |only rxode2-5.1.1/rxode2/inst/include/rxode2.h | 19 rxode2-5.1.1/rxode2/inst/include/rxode2EventTranslate.h |only rxode2-5.1.1/rxode2/inst/include/rxode2_RcppExports.h | 125 rxode2-5.1.1/rxode2/inst/include/rxode2_control.h | 7 rxode2-5.1.1/rxode2/inst/include/rxode2_model_shared.c | 42 rxode2-5.1.1/rxode2/inst/include/rxode2_model_shared.h | 21 rxode2-5.1.1/rxode2/inst/include/rxode2parseGetTime.h | 85 rxode2-5.1.1/rxode2/inst/include/rxode2parseHandleEvid.h | 111 rxode2-5.1.1/rxode2/inst/include/rxode2parseStruct.h | 113 rxode2-5.1.1/rxode2/inst/include/rxode2parseVer.h | 4 rxode2-5.1.1/rxode2/inst/include/rxode2parse_control.h | 14 rxode2-5.1.1/rxode2/inst/include/rxode2ptr.h | 54 rxode2-5.1.1/rxode2/inst/include/sbuf.c | 17 rxode2-5.1.1/rxode2/inst/tools/workaround.R | 16 rxode2-5.1.1/rxode2/inst/tran.g | 98 rxode2-5.1.1/rxode2/man/ELU.Rd | 32 rxode2-5.1.1/rxode2/man/GELU.Rd | 32 rxode2-5.1.1/rxode2/man/PReLU.Rd | 32 rxode2-5.1.1/rxode2/man/ReLU.Rd | 32 rxode2-5.1.1/rxode2/man/SELU.Rd | 32 rxode2-5.1.1/rxode2/man/Swish.Rd | 32 rxode2-5.1.1/rxode2/man/add.sampling.Rd | 2 rxode2-5.1.1/rxode2/man/as.data.table.rxEt.Rd |only rxode2-5.1.1/rxode2/man/as_tibble.rxEt.Rd |only rxode2-5.1.1/rxode2/man/assertCompartmentExists.Rd | 16 rxode2-5.1.1/rxode2/man/assertCompartmentName.Rd | 16 rxode2-5.1.1/rxode2/man/assertCompartmentNew.Rd | 16 rxode2-5.1.1/rxode2/man/assertRxUi.Rd | 16 rxode2-5.1.1/rxode2/man/assertVariableExists.Rd | 16 rxode2-5.1.1/rxode2/man/assertVariableNew.Rd | 16 rxode2-5.1.1/rxode2/man/binomProbs.Rd | 2 rxode2-5.1.1/rxode2/man/bolus.Rd |only rxode2-5.1.1/rxode2/man/dELU.Rd | 32 rxode2-5.1.1/rxode2/man/dGELU.Rd | 32 rxode2-5.1.1/rxode2/man/dPReLU.Rd | 32 rxode2-5.1.1/rxode2/man/dReLU.Rd | 32 rxode2-5.1.1/rxode2/man/dSELU.Rd | 32 rxode2-5.1.1/rxode2/man/dSwish.Rd | 32 rxode2-5.1.1/rxode2/man/dlReLU.Rd | 32 rxode2-5.1.1/rxode2/man/dot-rxLastCompileSuccess.Rd |only rxode2-5.1.1/rxode2/man/dsoftplus.Rd | 32 rxode2-5.1.1/rxode2/man/et.Rd | 34 rxode2-5.1.1/rxode2/man/etRbind.Rd | 10 rxode2-5.1.1/rxode2/man/etRep.Rd | 6 rxode2-5.1.1/rxode2/man/etTrans.Rd | 17 rxode2-5.1.1/rxode2/man/evid_.Rd |only rxode2-5.1.1/rxode2/man/genShinyApp.template.Rd | 9 rxode2-5.1.1/rxode2/man/getRxThreads.Rd | 12 rxode2-5.1.1/rxode2/man/infuse.Rd |only rxode2-5.1.1/rxode2/man/infuseDur.Rd |only rxode2-5.1.1/rxode2/man/ini.Rd | 4 rxode2-5.1.1/rxode2/man/is.rxEt.Rd | 17 rxode2-5.1.1/rxode2/man/lReLU.Rd | 32 rxode2-5.1.1/rxode2/man/linMod.Rd | 16 rxode2-5.1.1/rxode2/man/linToOde.Rd |only rxode2-5.1.1/rxode2/man/multiply.Rd |only rxode2-5.1.1/rxode2/man/obs.Rd |only rxode2-5.1.1/rxode2/man/phantom.Rd |only rxode2-5.1.1/rxode2/man/plot.rxSolve.Rd | 4 rxode2-5.1.1/rxode2/man/print.rxModelVars.Rd | 7 rxode2-5.1.1/rxode2/man/reexports.Rd | 4 rxode2-5.1.1/rxode2/man/replace.Rd |only rxode2-5.1.1/rxode2/man/reset.Rd |only rxode2-5.1.1/rxode2/man/rmdhunks/rxode2-create-models.Rmd | 4 rxode2-5.1.1/rxode2/man/rmdhunks/rxode2-syntax-hunk.Rmd | 2 rxode2-5.1.1/rxode2/man/rxCombineErrorLines.Rd | 3 rxode2-5.1.1/rxode2/man/rxDfdy.Rd | 12 rxode2-5.1.1/rxode2/man/rxInits.Rd | 12 rxode2-5.1.1/rxode2/man/rxLhs.Rd | 12 rxode2-5.1.1/rxode2/man/rxLoadState.Rd |only rxode2-5.1.1/rxode2/man/rxMemSummary.Rd |only rxode2-5.1.1/rxode2/man/rxMemoryEstimate.Rd |only rxode2-5.1.1/rxode2/man/rxModelVars.Rd | 12 rxode2-5.1.1/rxode2/man/rxParams.Rd | 16 rxode2-5.1.1/rxode2/man/rxRename.Rd | 4 rxode2-5.1.1/rxode2/man/rxSaveState.Rd |only rxode2-5.1.1/rxode2/man/rxSolve.Rd | 104 rxode2-5.1.1/rxode2/man/rxState.Rd | 12 rxode2-5.1.1/rxode2/man/rxTheme.Rd | 4 rxode2-5.1.1/rxode2/man/rxUdfUi.Rd | 28 rxode2-5.1.1/rxode2/man/rxUdfUiControl.Rd | 16 rxode2-5.1.1/rxode2/man/rxUdfUiData.Rd | 16 rxode2-5.1.1/rxode2/man/rxUdfUiEst.Rd | 16 rxode2-5.1.1/rxode2/man/rxUdfUiExpr.Rd |only rxode2-5.1.1/rxode2/man/rxUdfUiFlag.Rd |only rxode2-5.1.1/rxode2/man/rxUdfUiIniLhs.Rd | 16 rxode2-5.1.1/rxode2/man/rxUdfUiIsValue.Rd |only rxode2-5.1.1/rxode2/man/rxUdfUiMv.Rd | 16 rxode2-5.1.1/rxode2/man/rxUdfUiNum.Rd | 16 rxode2-5.1.1/rxode2/man/rxUdfUiParsing.Rd | 16 rxode2-5.1.1/rxode2/man/rxUiGet.Rd | 6 rxode2-5.1.1/rxode2/man/rxode2.Rd | 11 rxode2-5.1.1/rxode2/man/softplus.Rd | 32 rxode2-5.1.1/rxode2/man/splitBolus.Rd |only rxode2-5.1.1/rxode2/man/testIniDf.Rd | 16 rxode2-5.1.1/rxode2/man/testRxUnbounded.Rd | 16 rxode2-5.1.1/rxode2/man/zeroRe.Rd | 4 rxode2-5.1.1/rxode2/src/Makevars.in | 6 rxode2-5.1.1/rxode2/src/RcppExports.cpp | 315 rxode2-5.1.1/rxode2/src/approx.cpp | 36 rxode2-5.1.1/rxode2/src/cbindThetaOmega.cpp | 12 rxode2-5.1.1/rxode2/src/checkmate.cpp | 6 rxode2-5.1.1/rxode2/src/codegen.c | 40 rxode2-5.1.1/rxode2/src/codegen.h | 13 rxode2-5.1.1/rxode2/src/codegen2.h | 40 rxode2-5.1.1/rxode2/src/cvPost.cpp | 160 rxode2-5.1.1/rxode2/src/dop853.c | 374 rxode2-5.1.1/rxode2/src/dop853.h | 65 rxode2-5.1.1/rxode2/src/et.cpp | 3622 -- rxode2-5.1.1/rxode2/src/etTran.cpp | 202 rxode2-5.1.1/rxode2/src/expm.cpp | 27 rxode2-5.1.1/rxode2/src/fast_factor.cpp | 52 rxode2-5.1.1/rxode2/src/forder.cpp | 2 rxode2-5.1.1/rxode2/src/genModelVars.c | 127 rxode2-5.1.1/rxode2/src/genModelVars.h | 29 rxode2-5.1.1/rxode2/src/handle_evid.cpp | 42 rxode2-5.1.1/rxode2/src/init.c | 86 rxode2-5.1.1/rxode2/src/isEt.c | 42 rxode2-5.1.1/rxode2/src/linCmt.cpp | 79 rxode2-5.1.1/rxode2/src/lsoda.c | 17 rxode2-5.1.1/rxode2/src/omegaChol.c | 198 rxode2-5.1.1/rxode2/src/par_solve.cpp | 1577 - rxode2-5.1.1/rxode2/src/par_solve.h | 60 rxode2-5.1.1/rxode2/src/parseFuns.h | 456 rxode2-5.1.1/rxode2/src/parseLinCmt.c | 36 rxode2-5.1.1/rxode2/src/parseLogical.h | 138 rxode2-5.1.1/rxode2/src/parseStatements.h | 15 rxode2-5.1.1/rxode2/src/parseSyntaxErrors.h | 17 rxode2-5.1.1/rxode2/src/rx2api.c | 42 rxode2-5.1.1/rxode2/src/rx2api.h | 29 rxode2-5.1.1/rxode2/src/rxData.cpp | 1713 + rxode2-5.1.1/rxode2/src/rxData.h | 8 rxode2-5.1.1/rxode2/src/rxDerived.cpp | 162 rxode2-5.1.1/rxode2/src/rxGlobals.h |only rxode2-5.1.1/rxode2/src/rxMemAvail.h |only rxode2-5.1.1/rxode2/src/rxMemoryComponents.cpp |only rxode2-5.1.1/rxode2/src/rxProtect.h |only rxode2-5.1.1/rxode2/src/rxSerialize.cpp |only rxode2-5.1.1/rxode2/src/rxode2_altrep.c |only rxode2-5.1.1/rxode2/src/rxode2_altrep.h |only rxode2-5.1.1/rxode2/src/rxode2_df.cpp | 1179 rxode2-5.1.1/rxode2/src/rxode2_df.h | 8 rxode2-5.1.1/rxode2/src/rxomp.h | 10 rxode2-5.1.1/rxode2/src/rxthreefry.cpp | 76 rxode2-5.1.1/rxode2/src/sbuf.c | 17 rxode2-5.1.1/rxode2/src/seed.cpp | 3 rxode2-5.1.1/rxode2/src/strdup_printf.c | 4 rxode2-5.1.1/rxode2/src/tran.c | 78 rxode2-5.1.1/rxode2/src/tran.g.d_parser.h |12480 +++++++--- rxode2-5.1.1/rxode2/src/tran.h | 35 rxode2-5.1.1/rxode2/src/udf.cpp | 7 rxode2-5.1.1/rxode2/src/utilc.cpp | 194 rxode2-5.1.1/rxode2/tests/testthat/test-000-modelVars.R | 61 rxode2-5.1.1/rxode2/tests/testthat/test-altrep-output.R |only rxode2-5.1.1/rxode2/tests/testthat/test-backward.R | 43 rxode2-5.1.1/rxode2/tests/testthat/test-cov.R | 18 rxode2-5.1.1/rxode2/tests/testthat/test-dollar-names.R | 10 rxode2-5.1.1/rxode2/tests/testthat/test-dsl.R | 7 rxode2-5.1.1/rxode2/tests/testthat/test-et-r.R |only rxode2-5.1.1/rxode2/tests/testthat/test-et-vctrs.R |only rxode2-5.1.1/rxode2/tests/testthat/test-et.R | 249 rxode2-5.1.1/rxode2/tests/testthat/test-etTrans.R | 692 rxode2-5.1.1/rxode2/tests/testthat/test-evid-push.R |only rxode2-5.1.1/rxode2/tests/testthat/test-evid3.R | 62 rxode2-5.1.1/rxode2/tests/testthat/test-iCov.R | 24 rxode2-5.1.1/rxode2/tests/testthat/test-ind-alloc.R |only rxode2-5.1.1/rxode2/tests/testthat/test-ini.R | 7 rxode2-5.1.1/rxode2/tests/testthat/test-interp.R | 13 rxode2-5.1.1/rxode2/tests/testthat/test-issue-999.R |only rxode2-5.1.1/rxode2/tests/testthat/test-issue-lhs-string-segfault.R |only rxode2-5.1.1/rxode2/tests/testthat/test-lhs-str.R | 32 rxode2-5.1.1/rxode2/tests/testthat/test-lincmt-solve-sens.R |only rxode2-5.1.1/rxode2/tests/testthat/test-lincmt-solve.R | 2 rxode2-5.1.1/rxode2/tests/testthat/test-logical.R | 30 rxode2-5.1.1/rxode2/tests/testthat/test-nmtest.R | 43 rxode2-5.1.1/rxode2/tests/testthat/test-par-dop853.R |only rxode2-5.1.1/rxode2/tests/testthat/test-pkg-exported-funs.R |only rxode2-5.1.1/rxode2/tests/testthat/test-plogis.R |only rxode2-5.1.1/rxode2/tests/testthat/test-random.R | 24 rxode2-5.1.1/rxode2/tests/testthat/test-resample.R | 46 rxode2-5.1.1/rxode2/tests/testthat/test-rxIs.R | 6 rxode2-5.1.1/rxode2/tests/testthat/test-rxMemoryEstimate.R |only rxode2-5.1.1/rxode2/tests/testthat/test-rxode-issue-982.R |only rxode2-5.1.1/rxode2/tests/testthat/test-seq.R | 2 rxode2-5.1.1/rxode2/tests/testthat/test-serialize.R |only rxode2-5.1.1/rxode2/tests/testthat/test-sticky-vars.R |only rxode2-5.1.1/rxode2/tests/testthat/test-tolFactor.R |only rxode2-5.1.1/rxode2/tests/testthat/test-ui-err.R | 6 rxode2-5.1.1/rxode2/tests/testthat/test-ui-piping.R | 2 rxode2-5.1.1/rxode2/tests/testthat/test-ui-solve.R | 16 rxode2-5.1.1/rxode2/tests/testthat/test-ui.R | 218 rxode2-5.1.1/rxode2/tests/testthat/test-zzzz-rxUse.R | 14 rxode2-5.1.1/rxode2/vignettes/rxode2-syntax.Rmd | 3 240 files changed, 19988 insertions(+), 11406 deletions(-)
Title: R Interface to API 'vk.com'
Description: Load data from vk.com api about your communiti users and views,
ads performance, post on user wall and etc. For more information
see API Documentation <https://vk.com/dev/first_guide>.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rvkstat versions 3.2.0 dated 2021-10-18 and 3.3.2 dated 2026-05-28
DESCRIPTION | 16 +++++---- MD5 | 76 ++++++++++++++++++++++---------------------- NEWS.md | 20 +++++++++++ R/vkGetAdAccounts.R | 2 - R/vkGetAdAgeStats.R | 2 - R/vkGetAdBudget.R | 2 - R/vkGetAdCampaigns.R | 2 - R/vkGetAdCategories.R | 2 - R/vkGetAdCityStats.R | 2 - R/vkGetAdClients.R | 2 - R/vkGetAdGenderAgeStats.R | 2 - R/vkGetAdGenderStats.R | 2 - R/vkGetAdPostsReach.R | 2 - R/vkGetAdStatistics.R | 6 +-- R/vkGetAds.R | 2 - R/vkGetAdsLayout.R | 2 - R/vkGetDbCities.R | 2 - R/vkGetDbCountries.R | 2 - R/vkGetDbMetroStations.R | 2 - R/vkGetDbRegions.R | 2 - R/vkGetDbSchools.R | 2 - R/vkGetDbUniversities.R | 2 - R/vkGetGroupMembers.R | 2 - R/vkGetGroupStat.R | 2 - R/vkGetGroupStatAge.R | 2 - R/vkGetGroupStatCity.R | 2 - R/vkGetGroupStatCountries.R | 2 - R/vkGetGroupStatGender.R | 2 - R/vkGetGroupStatGenderAge.R | 2 - R/vkGetGroupStatPostReach.R | 2 - R/vkGetUserFriends.R | 2 - R/vkGetUserGroups.R | 2 - R/vkGetUserWall.R | 2 - R/zzz.R | 2 - README.md | 12 +++--- build/partial.rdb |binary man/vkGetDbMetroStations.Rd | 62 +++++++++++++++++------------------ man/vkGetDbSchools.Rd | 68 +++++++++++++++++++-------------------- man/vkGetDbUniversities.Rd | 74 +++++++++++++++++++++--------------------- 39 files changed, 208 insertions(+), 186 deletions(-)
Title: Multilevel B-Spline Approximation
Description: Functions to interpolate irregularly and regularly spaced data using Multilevel B-spline Approximation (MBA). Functions call portions of the SINTEF Multilevel B-spline Library written by Øyvind Hjelle which implements methods developed by Lee, Wolberg and Shin (1997; <doi:10.1109/2945.620490>).
Author: Andrew Finley [aut, cre],
Sudipto Banerjee [aut],
Oeyvind Hjelle [aut],
Roger Bivand [ctb]
Maintainer: Andrew Finley <finleya@msu.edu>
Diff between MBA versions 0.1-2 dated 2024-09-23 and 0.1-3 dated 2026-05-28
DESCRIPTION | 13 ++++++++----- MD5 | 7 ++++++- README.md |only inst |only man/figures |only tests |only 6 files changed, 14 insertions(+), 6 deletions(-)
Title: Generalized Kumaraswamy Distribution Family
Description: Implements the five-parameter Generalized Kumaraswamy ('gkw')
distribution proposed by 'Carrasco, Ferrari and Cordeiro (2010)'
<doi:10.48550/arXiv.1004.0911> and its seven nested sub-families for
modeling bounded continuous data on the unit interval (0,1). The 'gkw'
distribution extends the Kumaraswamy distribution described by Jones (2009)
<doi:10.1016/j.stamet.2008.04.001>. Provides density, distribution,
quantile, and random generation functions, along with analytical
log-likelihood, gradient, and Hessian functions implemented in 'C++' via
'RcppArmadillo' for maximum computational efficiency. Suitable for modeling
proportions, rates, percentages, and indices exhibiting complex features
such as asymmetry, or heavy tails and other shapes not adequately captured by
standard distributions like simple Beta or Kumaraswamy.
Author: Jose Evandeilton Lopes [aut, cre]
Maintainer: Jose Evandeilton Lopes <evandeilton@gmail.com>
Diff between gkwdist versions 1.1.3 dated 2026-05-21 and 1.1.4 dated 2026-05-28
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 9 +++++++++ inst/doc/into-gkwdist.html | 6 +++--- inst/doc/theory-gkwdist.html | 4 ++-- tests/testthat/test-mle-performance.R | 2 ++ 6 files changed, 24 insertions(+), 13 deletions(-)
Title: Genetic Analysis Package
Description: As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18.
<doi:10.18637/jss.v023.i08>], it is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it contains functions for
sample size calculations of both population-based and family-based designs, probability
of familial disease aggregation, kinship calculation, statistics in linkage analysis,
and association analysis involving genetic markers including haplotype analysis with or
without environmental covariates. Over years, the package has been developed in-between
many projects hence also in line with the name (gap).
Author: Jing Hua Zhao [aut, cre] ,
Kurt Hornik [ctb],
Brian Ripley [ctb],
Uwe Ligges [ctb],
Achim Zeileis [ctb]
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between gap versions 1.15.1 dated 2026-05-24 and 1.15.2 dated 2026-05-28
gap-1.15.1/gap/inst/doc/gap_incl.html |only gap-1.15.2/gap/ChangeLog | 3 +++ gap-1.15.2/gap/DESCRIPTION | 8 ++++---- gap-1.15.2/gap/MD5 | 23 +++++++++++------------ gap-1.15.2/gap/build/partial.rdb |binary gap-1.15.2/gap/build/vignette.rds |binary gap-1.15.2/gap/inst/README.md | 1 + gap-1.15.2/gap/inst/doc/gap.R | 5 ++--- gap-1.15.2/gap/inst/doc/gap.Rmd | 10 +++++----- gap-1.15.2/gap/inst/doc/gap.html | 2 +- gap-1.15.2/gap/inst/doc/shinygap.html | 4 ++-- gap-1.15.2/gap/src/pfc.sim.f | 9 ++++++--- gap-1.15.2/gap/vignettes/gap.Rmd | 10 +++++----- 13 files changed, 40 insertions(+), 35 deletions(-)
Title: Dunn's Test of Multiple Comparisons Using Rank Sums
Description: Computes Dunn's test (1964) for stochastic superiority and reports the results among multiple pairwise comparisons after a Kruskal-Wallis test for stochastic superiority among k groups (Kruskal and Wallis, 1952). 'dunn.test' makes k(k-1)/2 multiple pairwise comparisons based on Dunn's z-test-statistic approximations to the actual rank statistics. The null hypothesis for each pairwise comparison is that the probability of observing a randomly selected value from the first group that is larger than a randomly selected value from the second group equals one half; this null hypothesis corresponds to that of the Wilcoxon-Mann-Whitney rank-sum test. 'dunn.test' accounts for tied ranks.
Author: Alexis Dinno [aut, cre, cph]
Maintainer: Alexis Dinno <alexis.dinno@pdx.edu>
Diff between dunn.test versions 1.3.7 dated 2026-02-13 and 1.4.0 dated 2026-05-28
DESCRIPTION | 12 MD5 | 26 - NAMESPACE | 1 R/all.integers.R |only R/alphabetize.factor.R |only R/centertext.R |only R/dunn.test.R | 748 +++++++++++------------------------- R/dunntestheader.R |only R/dunntestptable.R |only R/dunntestztable.R |only R/get_order.R |only R/kwallis.test.R |only R/multiple_comparisons_adjustment.R |only R/pad.left.R | 3 R/pad.spaces.R | 3 R/tiedranks.R |only R/tpad.R |only R/zformat.R |only build/partial.rdb |binary man/dunn.test.Rd | 63 ++- 20 files changed, 314 insertions(+), 542 deletions(-)
Title: Vectorised Computation of P-Values and Their Supports for
Several Discrete Statistical Tests
Description: Provides vectorised functions for computing p-values of various
common discrete statistical tests, as described e.g. in Agresti (2002)
<doi:10.1002/0471249688>, including their distributions. Exact and
approximate computation methods are provided. For exact ones, several
procedures of determining two-sided p-values are included, which are
outlined in more detail in Hirji (2006) <doi:10.1201/9781420036190>.
Author: Florian Junge [cre, aut] ,
Christina Kihn [aut],
Sebastian Doehler [ctb] ,
Guillermo Durand [ctb]
Maintainer: Florian Junge <diso.fbmn@h-da.de>
Diff between DiscreteTests versions 0.4.0 dated 2026-05-19 and 0.4.1 dated 2026-05-28
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/DiscreteTests-package.R | 8 ++++---- R/permutation.r | 6 +++--- man/DiscreteTests-package.Rd | 8 ++++---- man/perm_test_pv.Rd | 6 +++--- src/permutation.cpp | 1 + 8 files changed, 31 insertions(+), 25 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrology and Water Quality
Data
Description: Collection of functions to help retrieve U.S. Geological Survey
and U.S. Environmental Protection Agency water quality and
hydrology data from web services.
Author: Laura DeCicco [aut, cre] ,
Robert Hirsch [aut] ,
David Lorenz [aut],
Jordan Read [ctb],
Jordan Walker [ctb],
Lindsay Platt [ctb],
David Watkins [aut] ,
David Blodgett [aut] ,
Mike Johnson [aut] ,
Aliesha Krall [ctb] ,
Lee Stanish [ctb] ,
Joseph Zemme [...truncated...]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between dataRetrieval versions 2.7.24 dated 2026-03-31 and 2.7.25 dated 2026-05-28
DESCRIPTION | 8 - MD5 | 161 ++++++++++---------- NAMESPACE | 2 NEWS | 25 +++ R/AAA.R | 34 ++-- R/constructNWISURL.R | 20 -- R/construct_api_requests.R | 156 ++++++++++++------- R/dataRetrieval-package.R | 4 R/findNLDI.R | 17 +- R/getWebServiceData.R | 11 + R/get_ogc_data.R | 156 ++++++++++++++++--- R/importWQP.R | 20 -- R/readNGWMNdata.R | 19 +- R/readNWISdata.R | 75 --------- R/readNWISunit.R | 91 ++++------- R/readWQPdata.R | 206 ++++++++++++------------- R/readWQPqw.R | 26 +-- R/read_waterdata.R | 43 +++-- R/read_waterdata_channel.R | 32 +--- R/read_waterdata_combined_meta.R | 41 ++--- R/read_waterdata_continuous.R | 25 +-- R/read_waterdata_daily.R | 33 +--- R/read_waterdata_field_measurements.R | 42 ++--- R/read_waterdata_field_meta.R | 33 +--- R/read_waterdata_latest_continuous.R | 32 +--- R/read_waterdata_latest_daily.R | 34 +--- R/read_waterdata_metadata.R | 24 ++- R/read_waterdata_monitoring_location.R | 27 +-- R/read_waterdata_parameter_codes.R | 13 + R/read_waterdata_peaks.R |only R/read_waterdata_ratings.R |only R/read_waterdata_samples.R | 103 ++---------- R/read_waterdata_stats.R | 51 +++++- R/read_waterdata_ts_meta.R | 39 +--- R/rejigger_cols.R | 8 - R/sysdata.rda |binary R/walk_pages.R | 71 ++++---- R/whatWQPdata.R | 38 ++-- R/whatWQPsites.R | 58 +++---- build/vignette.rds |binary inst/CITATION | 4 inst/doc/dataRetrieval.R | 24 +-- inst/doc/dataRetrieval.Rmd | 28 +-- inst/doc/dataRetrieval.html | 39 ++-- man/check_arguments_api.Rd |only man/check_arguments_non_api.Rd |only man/construct_api_requests.Rd | 57 +++++-- man/construct_waterdata_sample_request.Rd | 2 man/get_nldi_sources.Rd | 2 man/readNWISdata.Rd | 78 --------- man/readNWISpeak.Rd | 10 - man/readNWISrating.Rd | 4 man/readNWISstat.Rd | 34 ++-- man/readNWISuv.Rd | 19 -- man/readWQPdata.Rd | 194 ++++++++++++------------ man/readWQPqw.Rd | 26 +-- man/readWQPsummary.Rd | 44 ++--- man/read_USGS_samples.Rd |only man/read_waterdata.Rd | 19 ++ man/read_waterdata_channel.Rd | 51 ++++-- man/read_waterdata_combined_meta.Rd | 66 +++++--- man/read_waterdata_continuous.Rd | 38 +++- man/read_waterdata_daily.Rd | 48 ++++-- man/read_waterdata_field_measurements.Rd | 68 ++++++-- man/read_waterdata_field_meta.Rd | 48 ++++-- man/read_waterdata_latest_continuous.Rd | 48 ++++-- man/read_waterdata_latest_daily.Rd | 50 ++++-- man/read_waterdata_metadata.Rd | 20 ++ man/read_waterdata_monitoring_location.Rd | 45 ++++- man/read_waterdata_parameter_codes.Rd | 11 + man/read_waterdata_peaks.Rd |only man/read_waterdata_ratings.Rd |only man/read_waterdata_samples.Rd | 30 --- man/read_waterdata_stats.Rd | 23 ++ man/read_waterdata_ts_meta.Rd | 70 +++++--- man/summarize_waterdata_samples.Rd | 11 - man/whatWQPdata.Rd | 20 +- man/wqpSpecials.Rd | 32 ++-- man/wqp_check_status.Rd | 12 - tests/testthat/test_waterdata_stats.R | 29 +++ tests/testthat/tests_general.R | 240 +++++++++++------------------- tests/testthat/tests_imports.R | 212 -------------------------- tests/testthat/tests_nldi.R | 1 tests/testthat/tests_userFriendly_fxns.R | 157 +++++++++++-------- vignettes/dataRetrieval.Rmd | 28 +-- 85 files changed, 1842 insertions(+), 1878 deletions(-)
Title: ADaM in R Asset Library
Description: A toolbox for programming Clinical Data Interchange Standards
Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in R.
ADaM datasets are a mandatory part of any New Drug or Biologics
License Application submitted to the United States Food and Drug
Administration (FDA). Analysis derivations are implemented in
accordance with the "Analysis Data Model Implementation Guide" (CDISC
Analysis Data Model Team, 2021,
<https://www.cdisc.org/standards/foundational/adam>).
Author: Edoardo Mancini [aut, cre] ,
Stefan Bundfuss [aut] ,
Matt Bearham [aut],
Arianna Cascone [aut] ,
Kristin Dahnert [aut],
Jeffrey Dickinson [aut],
Ross Farrugia [aut],
Fanny Gautier [aut],
Gordon Miller [aut],
Lina Patil [aut],
Jim Rothstein [aut] ,
Be [...truncated...]
Maintainer: Edoardo Mancini <edoardo.mancini@roche.com>
Diff between admiral versions 1.4.1 dated 2026-02-03 and 1.4.2 dated 2026-05-28
DESCRIPTION | 19 MD5 | 346 +++++++++--------- NEWS.md | 4 R/data.R | 2 R/derive_merged.R | 2 R/derive_var_extreme_flag.R | 2 build/vignette.rds |binary inst/doc/generic.html | 4 man/adjust_last_day_imputation.Rd | 12 man/admiral-package.Rd | 4 man/assert_date_imputation.Rd | 12 man/assert_db_requirements.Rd | 36 - man/assert_highest_imputation.Rd | 30 - man/assert_parameters_argument.Rd | 12 man/assert_terms.Rd | 24 - man/assert_time_imputation.Rd | 12 man/basket_select.Rd | 31 - man/call_derivation.Rd | 24 - man/call_user_fun.Rd | 6 man/censor_source.Rd | 37 - man/chr2vars.Rd | 6 man/compute_age_years.Rd | 14 man/compute_bmi.Rd | 14 man/compute_bsa.Rd | 21 - man/compute_dtf.Rd | 12 man/compute_duration.Rd | 52 -- man/compute_egfr.Rd | 42 -- man/compute_framingham.Rd | 48 -- man/compute_map.Rd | 18 man/compute_qtc.Rd | 19 man/compute_qual_imputation.Rd | 18 man/compute_qual_imputation_dec.Rd | 6 man/compute_rr.Rd | 6 man/compute_scale.Rd | 31 - man/compute_tmf.Rd | 19 man/consolidate_metadata.Rd | 35 - man/convert_blanks_to_na.Rd | 6 man/convert_date_to_dtm.Rd | 50 -- man/convert_dtc_to_dt.Rd | 43 -- man/convert_dtc_to_dtm.Rd | 51 -- man/convert_na_to_blanks.Rd | 6 man/convert_xxtpt_to_hours.Rd | 136 ------- man/count_vals.Rd | 12 man/create_period_dataset.Rd | 18 man/create_query_data.Rd | 18 man/create_single_dose_dataset.Rd | 62 --- man/date_source.Rd | 24 - man/default_qtc_paramcd.Rd | 7 man/derivation_slice.Rd | 12 man/derive_basetype_records.Rd | 12 man/derive_expected_records.Rd | 22 - man/derive_extreme_event.Rd | 518 --------------------------- man/derive_extreme_records.Rd | 622 -------------------------------- man/derive_locf_records.Rd | 195 ---------- man/derive_param_bmi.Rd | 55 -- man/derive_param_bsa.Rd | 62 --- man/derive_param_computed.Rd | 382 ------------------- man/derive_param_doseint.Rd | 67 --- man/derive_param_exist_flag.Rd | 64 --- man/derive_param_exposure.Rd | 34 - man/derive_param_extreme_record.Rd | 43 -- man/derive_param_framingham.Rd | 97 ----- man/derive_param_map.Rd | 56 -- man/derive_param_qtc.Rd | 56 -- man/derive_param_rr.Rd | 42 -- man/derive_param_tte.Rd | 587 ------------------------------ man/derive_param_wbc_abs.Rd | 52 -- man/derive_summary_records.Rd | 333 ----------------- man/derive_var_age_years.Rd | 25 - man/derive_var_analysis_ratio.Rd | 24 - man/derive_var_anrind.Rd | 18 man/derive_var_atoxgr.Rd | 18 man/derive_var_atoxgr_dir.Rd | 87 ---- man/derive_var_base.Rd | 30 - man/derive_var_chg.Rd | 6 man/derive_var_dthcaus.Rd | 24 - man/derive_var_extreme_dt.Rd | 37 - man/derive_var_extreme_dtm.Rd | 37 - man/derive_var_extreme_flag.Rd | 413 --------------------- man/derive_var_joined_exist_flag.Rd | 627 -------------------------------- man/derive_var_merged_ef_msrc.Rd | 56 -- man/derive_var_merged_exist_flag.Rd | 65 --- man/derive_var_merged_summary.Rd | 42 -- man/derive_var_nfrlt.Rd | 627 -------------------------------- man/derive_var_obs_number.Rd | 33 - man/derive_var_ontrtfl.Rd | 61 --- man/derive_var_pchg.Rd | 6 man/derive_var_relative_flag.Rd | 67 --- man/derive_var_shift.Rd | 36 - man/derive_var_trtdurd.Rd | 18 man/derive_var_trtemfl.Rd | 378 ------------------- man/derive_vars_aage.Rd | 45 -- man/derive_vars_atc.Rd | 30 - man/derive_vars_cat.Rd | 227 ----------- man/derive_vars_computed.Rd | 54 -- man/derive_vars_crit_flag.Rd | 188 --------- man/derive_vars_dt.Rd | 331 ----------------- man/derive_vars_dtm.Rd | 276 -------------- man/derive_vars_dtm_to_dt.Rd | 12 man/derive_vars_dtm_to_tm.Rd | 12 man/derive_vars_duration.Rd | 70 --- man/derive_vars_dy.Rd | 18 man/derive_vars_extreme_event.Rd | 60 --- man/derive_vars_joined.Rd | 689 ------------------------------------ man/derive_vars_joined_summary.Rd | 359 ------------------ man/derive_vars_merged.Rd | 363 ------------------ man/derive_vars_merged_lookup.Rd | 74 --- man/derive_vars_merged_summary.Rd | 42 -- man/derive_vars_period.Rd | 24 - man/derive_vars_query.Rd | 12 man/derive_vars_transposed.Rd | 50 -- man/dt_level.Rd | 8 man/dthcaus_source.Rd | 44 -- man/dtm_level.Rd | 9 man/event.Rd | 51 -- man/event_joined.Rd | 72 --- man/event_source.Rd | 31 - man/ex_single.Rd | 2 man/extend_condition.Rd | 18 man/extract_duplicate_records.Rd | 13 man/extract_unit.Rd | 6 man/filter_date_sources.Rd | 44 -- man/filter_exist.Rd | 24 - man/filter_extreme.Rd | 35 - man/filter_joined.Rd | 361 ------------------ man/filter_not_exist.Rd | 24 - man/filter_relative.Rd | 61 --- man/flag_event.Rd | 21 - man/format.basket_select.Rd | 12 man/format_imputed_dtc.Rd | 6 man/get_admiral_option.Rd | 6 man/get_dt_dtm_range.Rd | 12 man/get_flagged_records.Rd | 25 - man/get_highest_imputation_level.Rd | 12 man/get_hori_data.Rd | 33 - man/get_imputation_target_date.Rd | 10 man/get_imputation_target_time.Rd | 4 man/get_imputation_targets.Rd | 14 man/get_joined_data.Rd | 84 ---- man/get_joined_sub_data.Rd | 62 --- man/get_partialdatetime.Rd | 12 man/get_summary_records.Rd | 22 - man/get_terms_from_db.Rd | 54 -- man/get_vars_query.Rd | 12 man/impute_date_time.Rd | 12 man/impute_dtc_dt.Rd | 43 -- man/impute_dtc_dtm.Rd | 51 -- man/is_partial_datetime.Rd | 6 man/list_all_templates.Rd | 6 man/list_tte_source_objects.Rd | 6 man/max_cond.Rd | 12 man/min_cond.Rd | 12 man/negate_vars.Rd | 6 man/params.Rd | 6 man/pipe.Rd | 12 man/print.adam_templates.Rd | 12 man/print.duplicates.Rd | 12 man/print.source.Rd | 12 man/print_named_list.Rd | 12 man/propagate_na_values.Rd | 6 man/query.Rd | 37 - man/records_source.Rd | 20 - man/restrict_derivation.Rd | 24 - man/restrict_imputed_dtc_dt.Rd | 27 - man/restrict_imputed_dtc_dtm.Rd | 27 - man/set_admiral_options.Rd | 18 man/signal_duplicate_records.Rd | 35 - man/slice_derivation.Rd | 24 - man/transform_range.Rd | 32 - man/tte_source.Rd | 37 - man/use_ad_template.Rd | 30 - man/validate_basket_select.Rd | 6 man/validate_query.Rd | 6 man/yn_to_numeric.Rd | 6 174 files changed, 1014 insertions(+), 11140 deletions(-)
Title: R Client for the 'ChEA3' Transcription Factor Enrichment API
Description: Interface to the 'ChEA3' transcription factor enrichment API.
'ChEA3' integrates evidence from ChIP-seq, co-expression, and literature
resources to prioritize transcription factors regulating a given set
of genes. This package provides convenient R functions to query the API,
retrieve ranked results across collections (including integrated scores),
and standardize output for downstream analysis in R/Bioconductor workflows.
See <https://maayanlab.cloud/chea3/> or Keenan (2019) <doi:10.1093/nar/gkz446>
for further details.
Author: Christophe Tav [aut, cre]
Maintainer: Christophe Tav <christophe.tav@gmail.com>
Diff between rChEA3 versions 0.2.0 dated 2025-10-15 and 1.0.1 dated 2026-05-28
DESCRIPTION | 8 +++--- MD5 | 24 +++++++++---------- NEWS.md | 19 +++++++++++++-- R/queryChEA3.R | 21 ++++++++++++++-- README.md | 38 +++++++++++++++++++++++++++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/rChEA3.R | 14 +++++++++++ inst/doc/rChEA3.Rmd | 29 +++++++++++++++++++++++ inst/doc/rChEA3.html | 64 +++++++++++++++++++++++++++++++++++++-------------- man/queryChEA3.Rd | 20 +++++++++++++++ man/today.Rd | 2 - vignettes/rChEA3.Rmd | 29 +++++++++++++++++++++++ 13 files changed, 224 insertions(+), 44 deletions(-)