Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcsqlite versions 0.23.0 dated 2026-04-08 and 0.23.0-1 dated 2026-06-03
DESCRIPTION | 6 MD5 | 8 src/c/vendor/nanoarrow/nanoarrow.c | 590 ++++++++++++++++++++++++++++++----- src/c/vendor/nanoarrow/nanoarrow.h | 122 +++++++ src/c/vendor/nanoarrow/nanoarrow.hpp | 2 5 files changed, 644 insertions(+), 84 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.23.0 dated 2026-04-08 and 0.23.0-1 dated 2026-06-03
DESCRIPTION | 6 MD5 | 8 src/c/vendor/nanoarrow/nanoarrow.c | 590 ++++++++++++++++++++++++++++++----- src/c/vendor/nanoarrow/nanoarrow.h | 122 +++++++ src/c/vendor/nanoarrow/nanoarrow.hpp | 2 5 files changed, 644 insertions(+), 84 deletions(-)
More information about adbcpostgresql at CRAN
Permanent link
Title: The Beta-Danish Distribution for Lifetime Data Analysis
Description: Implements the four-parameter Beta-Danish distribution and its
three-parameter submodel for survival and reliability analysis, based on
Ahmad and Danish (2025) <doi:10.2478/jamsi-2025-0010>. Provides functions
for density, distribution, quantile, hazard, and random generation.
Includes maximum likelihood estimation for complete and right-censored
data, goodness-of-fit assessment, comparison with standard lifetime
distributions, and publication-quality visualizations. Advanced modules
support Accelerated Failure Time (AFT) regression, mixture and
promotion-time cure models, and competing risks analysis.
Author: Bilal Ahmad [aut, cre],
Muhammad Yameen Danish [aut]
Maintainer: Bilal Ahmad <bilalahmad.imcbh9@gmail.com>
Diff between BetaDanish versions 0.1.0 dated 2026-05-20 and 0.2.0 dated 2026-06-03
DESCRIPTION | 13 - MD5 | 104 +++++--- NAMESPACE | 7 NEWS.md | 80 ++++-- R/bayes.R |only R/cif_compare.R |only R/data.R | 6 R/entropy.R |only R/order_stats.R |only R/plotting.R | 2 R/plotting_extras.R |only R/report.R | 2 R/summary_methods.R | 12 README.md | 392 +++++++++++++++++++++----------- build/vignette.rds |binary inst/WORDLIST |only inst/doc/BetaDanish_Introduction.html | 4 inst/doc/bd-bayesian.R |only inst/doc/bd-bayesian.Rmd |only inst/doc/bd-bayesian.html |only inst/doc/bd-competing-risks.R |only inst/doc/bd-competing-risks.Rmd |only inst/doc/bd-competing-risks.html |only inst/doc/bd-cure-models.R |only inst/doc/bd-cure-models.Rmd |only inst/doc/bd-cure-models.html |only inst/doc/betadanish-case-study.html | 87 +++---- man/BetaDanish-package.Rd | 82 +++--- man/BetaDanish.Rd | 142 +++++------ man/aarset.Rd | 62 ++--- man/analyze_betadanish.Rd | 46 +-- man/bayes_betadanish.Rd |only man/bd_entropy_shannon.Rd |only man/bd_order_stat_pdf.Rd |only man/brain_cancer.Rd | 98 ++++---- man/carbon_fibres.Rd | 62 ++--- man/cif_betadanish.Rd | 46 +-- man/cif_compare.Rd |only man/coef.betadanish.Rd | 38 +-- man/compare_distributions.Rd | 36 +- man/compare_models.Rd | 40 +-- man/fit_bd_aft.Rd | 60 ++-- man/fit_bd_competing.Rd | 64 ++--- man/fit_bd_cure.Rd | 88 +++---- man/fit_betadanish.Rd | 104 ++++---- man/gof_betadanish.Rd | 36 +- man/leukemia.Rd | 60 ++-- man/logLik.betadanish.Rd | 38 +-- man/melanoma.Rd | 74 +++--- man/plot.bd_aft.Rd |only man/plot.betadanish.Rd | 46 +-- man/print.betadanish.Rd | 38 +-- man/print.summary.betadanish.Rd | 38 +-- man/read_survival_data.Rd | 90 +++---- man/remission.Rd | 64 ++--- man/simulate_bd_cure_data.Rd | 96 +++---- man/simulate_bd_data.Rd | 64 ++--- man/summary.betadanish.Rd | 38 +-- man/transplant.Rd | 68 ++--- man/vcov.betadanish.Rd | 38 +-- tests/testthat/test-data_helpers.R | 58 ++-- tests/testthat/test-entropy-and-order.R |only vignettes/bd-bayesian.Rmd |only vignettes/bd-competing-risks.Rmd |only vignettes/bd-cure-models.Rmd |only 65 files changed, 1368 insertions(+), 1155 deletions(-)
Title: Advanced Interactive Data Tables and Data Explorer
Description: An advanced, interactive data table and data explorer for R,
delivered as a modern, self-contained 'htmlwidget' with a high-performance
virtualized grid. ViewR renders 'Kaggle'-style
micro-dashboard column headers complete with data-type badges, mini
distribution spark-histograms, and data-completeness (missingness) bars.
It provides hover metadata cards, a sliding Data Insights drawer with
interactive histograms and 'Pareto' category charts, a multi-condition
visual query builder (AND/OR), a column visibility picker, and a
reproducible code generator that emits 'dplyr', base R, and 'SQL' that
matches the active filter and column state. The interface is implemented
entirely in dependency-free vanilla 'JavaScript' (no 'React' or build
toolchain) and works in the 'RStudio'/'Positron' Viewer, inside 'Shiny'
apps, in 'R Markdown'/'Quarto', or as a portable standalone 'HTML' file.
A single call to viewr() opens the explorer; the legacy 'Shiny'-gadget
ViewR() editor remains available.
Author: Mahesh Divakaran [aut, cre]
Maintainer: Mahesh Divakaran <imaheshdivakaran@gmail.com>
Diff between ViewR versions 1.0.0 dated 2026-05-06 and 2.0.0 dated 2026-06-03
DESCRIPTION | 46 ++-- MD5 | 58 ++++-- NAMESPACE | 23 -- NEWS.md | 71 +++---- R/ViewR-package.R | 16 - R/ViewR.R | 93 ++++++++- R/code_gen.R | 43 +--- R/helpers.R | 269 ++++------------------------ R/save_viewr.R |only R/server.R | 345 ++++++++++++++----------------------- R/ui.R | 163 ++++------------- R/viewr_options.R |only R/viewr_stats.R |only R/viewr_widget.R |only README.md | 234 +++++++++++++------------ build/vignette.rds |binary inst/WORDLIST | 34 ++- inst/doc/ViewR-intro.R | 10 + inst/doc/ViewR-intro.Rmd | 23 ++ inst/doc/ViewR-intro.html | 217 ++++++++++++----------- inst/doc/viewdt.R |only inst/doc/viewdt.Rmd |only inst/doc/viewdt.html |only inst/htmlwidgets |only man/ViewR-package.Rd | 11 - man/ViewR.Rd | 34 ++- man/figures/logo.png |only man/install_viewr_deps.Rd |only man/save_viewdt.Rd |only man/viewdt-shiny.Rd |only man/viewdt.Rd |only man/viewdt_options.Rd |only tests/testthat/test-ViewR.R | 33 +++ tests/testthat/test-code_gen.R | 8 tests/testthat/test-viewr-widget.R |only vignettes/ViewR-intro.Rmd | 23 ++ vignettes/viewdt.Rmd |only 37 files changed, 801 insertions(+), 953 deletions(-)
Title: Reproducible Audit Trails for Indefensible Research
Description: Provides a structured, terminal-first interface for
exploratory model search, including transformation grids,
predictor-subset enumeration, interaction screening, principled-
sounding sample restrictions, outcome engineering, and model-form
escalation (polynomial / spline wraps, robust M-estimation,
generalized linear model (GLM) family swaps, random-intercept
lifts). Persistent run history,
achievement tracking, and reportable output generators (manuscript,
presentation, funding letter, graphical abstract, reviewer
response) are included.
Author: Gilles Colling [aut, cre]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between texanshootR versions 0.1.0 dated 2026-05-30 and 0.1.1 dated 2026-06-03
DESCRIPTION | 8 MD5 | 14 - NEWS.md | 10 R/shoot.R | 6 README.md | 459 ++++++++++++++++++++------------------------- man/reset.Rd | 2 man/texanshootR-package.Rd | 7 man/vocab.Rd | 13 - 8 files changed, 237 insertions(+), 282 deletions(-)
Title: Query, Pivot, Patch, and Validate 'JSON' and 'NDJSON'
Description: Functions to query (filter or transform), pivot (convert
from array-of-objects to object-of-arrays, for easy import as 'R'
data frame), search, patch (edit), and validate (against 'JSON Schema')
'JSON' and 'NDJSON' strings, files, or URLs. Query and
pivot support 'JSONpointer', 'JSONpath' or 'JMESpath'
expressions. The implementation uses the 'jsoncons'
<https://danielaparker.github.io/jsoncons/> header-only library;
the library is easily linked to other packages for direct access
to 'C++' functionality not implemented here.
Author: Martin Morgan [aut, cre] ,
Marcel Ramos [aut] ,
Daniel Parker [aut, cph]
Maintainer: Martin Morgan <mtmorgan.xyz@gmail.com>
Diff between rjsoncons versions 1.3.2 dated 2025-03-15 and 1.3.3 dated 2026-06-03
DESCRIPTION | 11 +++++---- MD5 | 10 ++++---- NEWS.md | 6 +++++ build/vignette.rds |binary inst/doc/a_rjsoncons.html | 36 +++++++++++++++---------------- inst/include/jsoncons/unicode_traits.hpp | 4 +-- 6 files changed, 37 insertions(+), 30 deletions(-)
Title: Group Lasso and Elastic Net Solver for Generalized Linear Models
Description: Extremely efficient procedures for fitting the entire group lasso and group elastic net regularization path for GLMs, multinomial, the Cox model and multi-task Gaussian models. Similar to the R package 'glmnet' in scope of models, and in computational speed. This package provides R bindings to the C++ code underlying the corresponding Python package 'adelie'. These bindings offer a general purpose group elastic net solver,
a wide range of matrix classes that can exploit special structure
to allow large-scale inputs, and an assortment of
generalized linear model classes for fitting various types of data.
The package is an implementation of Yang, J. and Hastie, T. (2024) <doi:10.48550/arXiv.2405.08631>.
Author: James Yang [aut, cph],
Trevor Hastie [aut, cph, cre],
Balasubramanian Narasimhan [aut]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between adelie versions 1.0.9 dated 2026-05-07 and 1.0.10 dated 2026-06-03
DESCRIPTION | 10 +- MD5 | 10 +- NEWS.md | 16 +++ R/matrix.R | 8 + inst/adelie/adelie/src/include/adelie_core/matrix/matrix_naive_dense.ipp | 1 inst/doc/adelie.html | 46 +++++----- 6 files changed, 55 insertions(+), 36 deletions(-)
Title: Content Validity Indices for Instrument Development
Description: Computes content validity indices commonly used in instrument
development and questionnaire validation, including the Item-level Content
Validity Index (I-CVI), Scale-level Content Validity Index (S-CVI),
modified kappa adjusted for chance agreement, Aiken's V, and Lawshe's
Content Validity Ratio (CVR). Methods follow Lynn (1986)
<doi:10.1097/00006199-198611000-00017>, Polit and Beck (2006)
<doi:10.1002/nur.20147>, Aiken (1985) <doi:10.1177/0013164485451012>,
and Lawshe (1975) <doi:10.1111/j.1744-6570.1975.tb01393.x>.
Author: Rashed Alqahtani [aut, cre]
Maintainer: Rashed Alqahtani <rashed.alqahtani@gmail.com>
Diff between contentValidity versions 0.1.0 dated 2026-05-11 and 0.2.0 dated 2026-06-03
DESCRIPTION | 7 MD5 | 83 ++++--- NAMESPACE | 13 + NEWS.md | 101 +++++++++ R/aiken_v.R | 101 +++++++-- R/apa_table.R | 132 ++++++++++- R/bootstrap_helpers.R |only R/contentValidity-package.R | 40 ++- R/content_validity.R | 122 +++++++++-- R/cv_sample_size.R |only R/cvr.R | 77 +++++- R/gwet_ac1.R |only R/gwet_ac2.R |only R/icvi.R | 115 +++++++++- R/mod_kappa.R | 117 ++++++++-- R/plot_content_validity.R |only R/scvi_ave.R | 123 +++++++++-- R/scvi_ua.R | 92 +++++++- README.md | 51 +++- inst/doc/getting-started.R | 37 +++ inst/doc/getting-started.Rmd | 149 +++++++++++++ inst/doc/getting-started.html | 309 +++++++++++++++++++++++----- man/aiken_v.Rd | 60 +++++ man/apa_table.Rd | 16 + man/contentValidity-package.Rd | 52 ++++ man/content_validity.Rd | 42 ++- man/cv_sample_size_icvi.Rd |only man/cvr.Rd | 32 ++ man/cvr_critical.Rd | 2 man/gwet_ac1.Rd |only man/gwet_ac2.Rd |only man/icvi.Rd | 71 ++++++ man/mod_kappa.Rd | 59 +++++ man/plot.content_validity.Rd |only man/scvi_ave.Rd | 57 ++++- man/scvi_ua.Rd | 58 ++++- tests/testthat/test-aiken_v.R | 97 ++++++++ tests/testthat/test-apa_table.R | 51 ++++ tests/testthat/test-content_validity.R | 83 +++++++ tests/testthat/test-cv_sample_size.R |only tests/testthat/test-cvr.R | 52 ++++ tests/testthat/test-gwet_ac1.R |only tests/testthat/test-gwet_ac2.R |only tests/testthat/test-icvi.R | 120 ++++++++++ tests/testthat/test-mod_kappa.R | 101 +++++++++ tests/testthat/test-plot_content_validity.R |only tests/testthat/test-scvi_ave.R | 63 +++++ tests/testthat/test-scvi_ua.R | 50 ++++ vignettes/getting-started.Rmd | 149 +++++++++++++ 49 files changed, 2618 insertions(+), 266 deletions(-)
More information about contentValidity at CRAN
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Title: Parallel Nonparametric Kernel Smoothing Methods for Mixed Data
Types Using 'MPI'
Description: Nonparametric (and semiparametric) kernel methods that seamlessly
handle a mix of continuous, unordered, and ordered factor data types. This
package is a parallel implementation of the 'np' package based on the 'MPI'
specification that incorporates the 'Rmpi' package (Hao Yu
<hyu@stats.uwo.ca>) with minor modifications and we are extremely grateful
to Hao Yu for his contributions to the 'R' community. We would like to
gratefully acknowledge support from the Natural Sciences and Engineering
Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca/>), the
Social Sciences and Humanities Research Council of Canada (SSHRC,
<https://www.sshrc-crsh.gc.ca/>), and the Shared Hierarchical Academic
Research Computing Network (SHARCNET, <https://sharcnet.ca/>). We would
also like to acknowledge the contributions of the 'GNU GSL' authors. In
particular, we adapt the 'GNU GSL' B-spline routine 'gsl_bspline.c' adding
automated support for quantile knots (in addition t [...truncated...]
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut],
Hao Yu [ctb, cph],
The GSL Team [cph],
Numerical Recipes Software [cph]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between npRmpi versions 0.70-2 dated 2026-05-15 and 0.70-3 dated 2026-06-03
CHANGELOG | 171 DESCRIPTION | 16 MD5 | 281 NAMESPACE | 31 NEWS.md | 155 R/Rmpi.R | 8 R/bandwidth.R | 4 R/conbandwidth.R | 7 R/condbandwidth.R | 5 R/condensity.R | 32 R/condistribution.R | 32 R/conmode.R | 22 R/dbandwidth.R | 2 R/density.R | 7 R/distribution.R | 7 R/lsqregression.R |only R/np.autodispatch.R | 35 R/np.cdhat.helpers.R | 2 R/np.cmstest.R | 298 R/np.condensity.R | 26 R/np.condensity.bw.R | 1782 ++ R/np.condistribution.R | 26 R/np.condistribution.bw.R | 1539 ++ R/np.copula.R | 8 R/np.deneqtest.R | 162 R/np.density.R | 32 R/np.density.bw.R | 616 R/np.deptest.R | 148 R/np.distribution.R | 10 R/np.distribution.bw.R | 675 + R/np.kernel.R | 2 R/np.lp.degree.search.R | 903 + R/np.lsqregression.R |only R/np.nomad.coordinate.R |only R/np.pairs.R | 7 R/np.plot.engine.bandwidth.R | 20 R/np.plot.engine.conbandwidth.R | 18 R/np.plot.engine.condbandwidth.R | 259 R/np.plot.engine.dbandwidth.R | 20 R/np.plot.engine.plbandwidth.R | 26 R/np.plot.engine.rbandwidth.R | 32 R/np.plot.engine.scbandwidth.R | 36 R/np.plot.engine.sibandwidth.R | 47 R/np.plot.helpers.R | 1786 ++ R/np.plot.methods.R | 107 R/np.plregression.R | 169 R/np.plregression.bw.R | 213 R/np.qcmstest.R | 196 R/np.qregression.R | 154 R/np.reghat.R | 38 R/np.regression.R | 41 R/np.regression.bw.R | 1340 +- R/np.sdeptest.R | 215 R/np.semihat.R | 88 R/np.sigtest.R | 75 R/np.singleindex.bw.R | 721 - R/np.smoothcoef.R | 88 R/np.smoothcoef.bw.R | 600 R/np.symtest.R | 199 R/np.unitest.R | 162 R/npregiv.R | 33 R/npuniden.boundary.R | 10 R/progress.R | 47 R/qregression.R | 22 R/rbandwidth.R | 2 R/regression.R | 17 R/session.R | 5 R/sibandwidth.R | 25 R/util.R | 871 + R/zzz.R | 143 README.md | 2 configure | 34 configure.ac | 22 demo/npplreg_npRmpi_attach.R | 1 inst/demo_family_npaux.R | 6 inst/demo_matrices/npcdens-sentinel.csv | 4 inst/demo_matrices/npcdist-sentinel.csv | 2 inst/demo_matrices/npconmode-sentinel.csv | 2 inst/demo_matrices/npreg-sentinel.csv | 2 inst/demo_matrices/npscoef-sentinel.csv | 2 inst/demo_matrices/npudens-sentinel.csv | 2 inst/doc/npRmpi_getting_started.R | 80 inst/doc/npRmpi_getting_started.Rmd | 11 man/np.condensity.Rd | 2 man/np.condensity.bw.Rd | 53 man/np.condistribution.Rd | 2 man/np.condistribution.bw.Rd | 37 man/np.conmode.Rd | 2 man/np.copula.Rd | 2 man/np.density.bw.Rd | 35 man/np.distribution.bw.Rd | 19 man/np.options.Rd | 70 man/np.plot.Rd | 4 man/np.plregression.Rd | 2 man/np.plregression.bw.Rd | 22 man/np.qregression.Rd | 2 man/np.quantile.Rd | 9 man/np.regression.Rd | 2 man/np.regression.bw.Rd | 47 man/np.singleindex.Rd | 2 man/np.singleindex.bw.Rd | 42 man/np.smoothcoef.Rd | 2 man/np.smoothcoef.bw.Rd | 24 man/nplsqreg.Rd |only man/nplsqregbw.Rd |only src/Rmpi.c | 65 src/headers.h | 18 src/jksum.c | 6334 +++++++++- src/kernelb.c | 150 src/kernelcv.c | 78 src/kernele.c | 244 src/np.c | 5285 +++++++- src/np_init.c | 24 src/nr.c | 21 src/statmods.c | 168 tests/testthat/test-autodispatch-option-sync-contract.R |only tests/testthat/test-bandwidth-summary-labels.R | 65 tests/testthat/test-bounded-kernel-contract.R | 62 tests/testthat/test-bw-summary-contract.R | 27 tests/testthat/test-conditional-fixed-formula-bws-contract.R |only tests/testthat/test-cv-path-lock-contract.R | 6 tests/testthat/test-fastpath-option-validation-contract.R |only tests/testthat/test-formula-dot-variable-contract.R |only tests/testthat/test-largeh-option-contract.R |only tests/testthat/test-mpi-finalize-ownership-contract.R | 1 tests/testthat/test-native-nomad-option-cleanup-contract.R |only tests/testthat/test-npcdens-categorical-profile-bw-contract.R |only tests/testthat/test-npcdens-categorical-profile-fit-contract.R |only tests/testthat/test-npcdens-cvls-public-contract.R | 49 tests/testthat/test-npcdens.R | 27 tests/testthat/test-npcdist-cvls-public-contract.R | 45 tests/testthat/test-npcdist.R | 27 tests/testthat/test-npconmode-proper-probability-contract.R | 3 tests/testthat/test-nplsqreg-option-contract.R |only tests/testthat/test-npplreg.R | 74 tests/testthat/test-npreg-fastpath-composition-contract.R |only tests/testthat/test-npreg-fit-fastpath-composition-contract.R |only tests/testthat/test-npscoef-categorical-profile-bw-contract.R |only tests/testthat/test-npscoef-categorical-profile-contract.R |only tests/testthat/test-npudens-categorical-cache-contract.R |only tests/testthat/test-npudens-categorical-profile-bw-contract.R |only tests/testthat/test-npudens-categorical-profile-fit-contract.R |only tests/testthat/test-npudist-categorical-profile-bw-contract.R |only tests/testthat/test-npudist-categorical-profile-fit-contract.R |only tests/testthat/test-powell-fixed-objective-cache-contract.R |only tests/testthat/test-powell-nn-cache-option-contract.R |only tests/testthat/test-progress-bandwidth-common-contract.R | 93 tests/testthat/test-progress-core.R | 47 tests/testthat/test-regression-categorical-profile-compression-contract.R |only tests/testthat/test-regression-categorical-state-contract.R |only tests/testthat/test-rmpi-wrapper-contracts.R | 62 tests/testthat/test-rng-state-contract.R |only tests/testthat/test-seed-helper-contract.R | 31 tests/testthat/test-semiparam-formula-response-name-subprocess-contract.R | 15 tests/testthat/test-tree-categorical-split-contract.R |only vignettes/npRmpi_getting_started.Rmd | 11 156 files changed, 25385 insertions(+), 3073 deletions(-)
Title: Interface to the Spanish 'Catastro' Web Services
Description: Access public spatial data from the Spanish 'Catastro'
through its 'INSPIRE' and related web services. Retrieve parcel,
building, address and map image data, and convert between parcel
references and coordinates.
Author: Angel Delgado Panadero [aut, cph] ,
Inaki Ucar [ctb] ,
Diego Hernangomez [aut, cre]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between CatastRo versions 1.0.1 dated 2026-04-27 and 1.0.2 dated 2026-06-03
DESCRIPTION | 18 - MD5 | 236 +++++++------- NEWS.md | 57 +-- R/CatastRo-package.R | 16 R/atom-ad-db.R | 160 ++------- R/atom-ad.R | 122 +------ R/atom-bu-db.R | 229 ++++--------- R/atom-bu.R | 118 +------ R/atom-cp-db.R | 233 ++++--------- R/atom-cp.R | 255 +++++---------- R/atom-search.R | 198 +++++------ R/cache-utils.R | 186 +++++------ R/catr-code-coords.R | 44 -- R/data.R | 61 +-- R/docs.R | 2 R/ovc-cpmrc.R | 253 ++++++--------- R/ovc-munic.R | 96 ++--- R/ovc-provinces.R | 91 ++--- R/ovc-rccoor-dist.R | 241 ++++++-------- R/ovc-rccoor.R | 207 +++++------- R/run-example.R | 106 +++--- R/utils-atom.R | 330 +++++++++++++++---- R/utils-ovc.R |only R/utils-sf.R | 308 +++++++++--------- R/utils-url.R | 100 ++--- R/utils-wfs.R | 486 ++++++++++++++++------------ R/utils.R | 69 ++-- R/wfs-ad.R | 431 ++++++++++--------------- R/wfs-bu.R | 96 +---- R/wfs-cp.R | 187 +++-------- R/wms-all.R | 75 +--- README.md | 110 +++--- build/vignette.rds |binary inst/CITATION | 42 +- inst/COPYRIGHTS | 158 ++++----- inst/WORDLIST | 197 +++++------ inst/doc/CatastRo.html | 94 ++--- inst/doc/CatastRo.qmd | 115 +++--- inst/doc/ovcservice.html | 32 - inst/doc/ovcservice.qmd | 60 +-- inst/schemaorg.json | 6 man/CatastRo-package.Rd | 74 ++-- man/catr_atom_get_address.Rd | 210 ++++++------ man/catr_atom_get_address_db.Rd | 212 ++++++------ man/catr_atom_get_buildings.Rd | 222 ++++++------- man/catr_atom_get_buildings_db.Rd | 212 ++++++------ man/catr_atom_get_parcels.Rd | 214 ++++++------ man/catr_atom_get_parcels_db.Rd | 212 ++++++------ man/catr_atom_search_munic.Rd | 144 ++++---- man/catr_clear_cache.Rd | 116 +++--- man/catr_get_code_from_coords.Rd | 192 +++++------ man/catr_ovc_get_cod_munic.Rd | 150 ++++---- man/catr_ovc_get_cod_provinces.Rd | 82 ++-- man/catr_ovc_get_cpmrc.Rd | 158 ++++----- man/catr_ovc_get_rccoor.Rd | 140 ++++---- man/catr_ovc_get_rccoor_distancia.Rd | 146 ++++---- man/catr_set_cache_dir.Rd | 226 ++++++------- man/catr_srs_values.Rd | 197 +++++------ man/catr_wfs_get_address.Rd | 293 ++++++++--------- man/catr_wfs_get_buildings.Rd | 299 ++++++++--------- man/catr_wfs_get_parcels.Rd | 326 +++++++++---------- man/catr_wms_get_layer.Rd | 370 +++++++++++----------- man/figures/README-atom-1.png |binary man/figures/lifecycle-deprecated.svg | 42 +- man/figures/lifecycle-experimental.svg | 42 +- man/figures/lifecycle-stable.svg | 58 +-- man/figures/lifecycle-superseded.svg | 42 +- man/inspire_wfs_get.Rd | 174 +++++----- man/roxygen/meta.R | 20 - man/run_example.Rd | 48 +- tests/testthat.R | 24 - tests/testthat/_snaps/atom-ad-db.md | 28 - tests/testthat/_snaps/atom-ad.md | 21 - tests/testthat/_snaps/atom-bu-db.md | 28 - tests/testthat/_snaps/atom-bu.md | 23 - tests/testthat/_snaps/atom-cp-db.md | 28 - tests/testthat/_snaps/atom-cp.md | 23 - tests/testthat/_snaps/atom-search.md | 14 tests/testthat/_snaps/cache-utils.md | 4 tests/testthat/_snaps/catr-code-coords.md | 20 - tests/testthat/_snaps/ovc-cpmrc.md | 10 tests/testthat/_snaps/ovc-munic.md | 12 tests/testthat/_snaps/ovc-provinces.md | 10 tests/testthat/_snaps/ovc-rccoor-dist.md | 10 tests/testthat/_snaps/ovc-rccoor.md | 10 tests/testthat/_snaps/utils-sf.md | 4 tests/testthat/_snaps/utils-url.md | 14 tests/testthat/_snaps/utils-wfs.md | 22 - tests/testthat/_snaps/utils.md | 22 - tests/testthat/_snaps/wfs-ad.md | 20 - tests/testthat/setup.R | 12 tests/testthat/test-atom-ad-db.R | 429 ++++++++++++------------- tests/testthat/test-atom-ad.R | 282 ++++++++-------- tests/testthat/test-atom-bu-db.R | 437 ++++++++++++-------------- tests/testthat/test-atom-bu.R | 326 +++++++++---------- tests/testthat/test-atom-cp-db.R | 433 ++++++++++++------------- tests/testthat/test-atom-cp.R | 308 ++++++++---------- tests/testthat/test-atom-search.R | 222 ++++++------- tests/testthat/test-cache-utils.R | 314 +++++++++--------- tests/testthat/test-catr-code-coords.R | 293 ++++++++--------- tests/testthat/test-ovc-cpmrc.R | 181 +++++----- tests/testthat/test-ovc-munic.R | 110 +++--- tests/testthat/test-ovc-provinces.R | 88 ++--- tests/testthat/test-ovc-rccoor-dist.R | 258 +++++++-------- tests/testthat/test-ovc-rccoor.R | 242 ++++++-------- tests/testthat/test-run-example.R | 58 +-- tests/testthat/test-utils-ovc.R |only tests/testthat/test-utils-sf.R | 162 ++++----- tests/testthat/test-utils-url.R | 504 ++++++++++++++---------------- tests/testthat/test-utils-wfs.R | 408 +++++++++++------------- tests/testthat/test-utils.R | 191 +++++------ tests/testthat/test-wfs-ad.R | 187 +++++------ tests/testthat/test-wfs-bu.R | 161 ++++----- tests/testthat/test-wfs-cp.R | 136 ++++---- tests/testthat/test-wms-all.R | 111 +++--- vignettes/CatastRo.qmd | 115 +++--- vignettes/REFERENCES.bib | 16 vignettes/dviz-1.png |binary vignettes/minimal-1.png |binary vignettes/ovcservice.qmd | 60 +-- 120 files changed, 8050 insertions(+), 8787 deletions(-)
Title: Reading FRE Corporate Data of Public Traded Companies from B3
Description: Reads corporate data such as board composition and compensation for companies traded at B3,
the Brazilian exchange <https://www.b3.com.br/>. All data is downloaded and imported from the ftp site <https://dados.cvm.gov.br/dados/CIA_ABERTA/DOC/FRE/>.
Author: Marcelo Perlin [aut, cre],
Guilherme Kirch [aut]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetFREData versions 0.8.1 dated 2022-06-13 and 1.0.1 dated 2026-06-03
GetFREData-0.8.1/GetFREData/tests/testthat/test-fredata.R |only GetFREData-1.0.1/GetFREData/DESCRIPTION | 16 GetFREData-1.0.1/GetFREData/MD5 | 39 +- GetFREData-1.0.1/GetFREData/NAMESPACE | 2 GetFREData-1.0.1/GetFREData/NEWS.md | 14 GetFREData-1.0.1/GetFREData/R/cache.R |only GetFREData-1.0.1/GetFREData/R/fct_clean_cache.R |only GetFREData-1.0.1/GetFREData/R/fct_download_file.R | 9 GetFREData-1.0.1/GetFREData/R/fct_get_fre_data.R | 6 GetFREData-1.0.1/GetFREData/R/fct_get_fre_data2.R |only GetFREData-1.0.1/GetFREData/R/fct_get_fre_links.R | 5 GetFREData-1.0.1/GetFREData/R/fct_get_info_companies.R | 4 GetFREData-1.0.1/GetFREData/R/fct_search_company.R | 2 GetFREData-1.0.1/GetFREData/README.md | 9 GetFREData-1.0.1/GetFREData/build/vignette.rds |binary GetFREData-1.0.1/GetFREData/inst/doc/GetFREData-vignette-introduction.R | 41 +- GetFREData-1.0.1/GetFREData/inst/doc/GetFREData-vignette-introduction.Rmd | 5 GetFREData-1.0.1/GetFREData/inst/doc/GetFREData-vignette-introduction.html | 165 +++++----- GetFREData-1.0.1/GetFREData/man/clean_fre_cache.Rd |only GetFREData-1.0.1/GetFREData/man/get_fre_data2.Rd |only GetFREData-1.0.1/GetFREData/man/get_info_companies.Rd | 4 GetFREData-1.0.1/GetFREData/man/search_company.Rd | 2 GetFREData-1.0.1/GetFREData/tests/testthat/test-fredata2.R |only GetFREData-1.0.1/GetFREData/vignettes/GetFREData-vignette-introduction.Rmd | 5 24 files changed, 180 insertions(+), 148 deletions(-)
Title: Adaptive Machine Learning-Powered, Context-Matching Tool for
Single-Cell and Spatial Transcriptomics Annotation
Description: Annotates single-cell and spatial-transcriptomic (ST) data using context-matching marker datasets. It creates a unified marker list (`Markers_list`) from multiple sources: built-in curated databases ('Cellmarker2', 'PanglaoDB', 'ScType', 'scIBD', 'TCellSI', 'PCTIT', 'PCTAM'), Seurat objects with cell labels, or user-provided Excel tables. SlimR first uses adaptive machine learning for parameter optimization, and then offers two automated annotation approaches: 'cluster-based' and 'per-cell'. Cluster-based annotation assigns one label per cluster, expression-based probability calculation, and AUC validation. Per-cell annotation assigns labels to individual cells using three scoring methods with adaptive thresholds and ratio-based confidence filtering, plus optional UMAP spatial smoothing, making it ideal for heterogeneous clusters and rare cell types. The package also supports semi-automated workflows with heatmaps, feature plots, and combined visualizations for manual annotation. For m [...truncated...]
Author: Zhaoqing Wang [aut, cre]
Maintainer: Zhaoqing Wang <zhaoqingwang@mail.sdu.edu.cn>
Diff between SlimR versions 1.1.3 dated 2026-04-07 and 1.1.5 dated 2026-06-03
DESCRIPTION | 12 ++-- MD5 | 98 ++++++++++++++++----------------- NAMESPACE | 1 NEWS.md | 17 +++++ R/Celltype_Compare.R |only R/globals.R | 3 - R/onattach.R | 38 +++++++++--- README.md | 36 +++++++++--- build/partial.rdb |binary man/Cellmarker2.Rd | 2 man/Cellmarker2_raw.Rd | 2 man/Cellmarker2_table.Rd | 2 man/Celltype_Annotation.Rd | 14 ++-- man/Celltype_Annotation_Combined.Rd | 6 +- man/Celltype_Annotation_Features.Rd | 16 +++-- man/Celltype_Annotation_Heatmap.Rd | 6 +- man/Celltype_Annotation_PerCell.Rd | 14 ++-- man/Celltype_Calculate.Rd | 14 ++-- man/Celltype_Calculate_PerCell.Rd | 14 ++-- man/Celltype_Compare.Rd |only man/Celltype_Verification.Rd | 14 ++-- man/Celltype_Verification_PerCell.Rd | 14 ++-- man/Celltype_annotation_Cellmarker2.Rd | 9 +-- man/Celltype_annotation_Excel.Rd | 9 +-- man/Celltype_annotation_PanglaoDB.Rd | 9 +-- man/Celltype_annotation_Seurat.Rd | 9 +-- man/Markers_filter_Cellmarker2.Rd | 10 +-- man/Markers_filter_PanglaoDB.Rd | 10 +-- man/Markers_filter_ScType.Rd | 10 +-- man/Markers_list_PCTAM.Rd | 2 man/Markers_list_PCTIT.Rd | 2 man/Markers_list_TCellSI.Rd | 2 man/Markers_list_scIBD.Rd | 2 man/PanglaoDB.Rd | 2 man/PanglaoDB_raw.Rd | 2 man/PanglaoDB_table.Rd | 2 man/Parameter_Calculate.Rd | 14 ++-- man/Read_excel_markers.Rd | 10 +-- man/Read_seurat_markers.Rd | 10 +-- man/ScType.Rd | 2 man/ScType_raw.Rd | 2 man/ScType_table.Rd | 2 man/calculate_cluster_variability.Rd | 14 ++-- man/calculate_expression.Rd | 14 ++-- man/calculate_expression_skewness.Rd | 14 ++-- man/calculate_probability.Rd | 14 ++-- man/compute_adaptive_parameters.Rd | 14 ++-- man/estimate_batch_effect.Rd | 14 ++-- man/extract_dataset_features.Rd | 14 ++-- man/percell_workflow.Rd | 16 ++--- tests/testthat/Rplots.pdf |binary 51 files changed, 312 insertions(+), 245 deletions(-)
Title: Stochastic Island Biogeography Theory Made Easy
Description: Develops stochastic models based on the Theory of Island
Biogeography (TIB) of MacArthur and Wilson (1967) <doi:10.1023/A:1016393430551>
and extensions. It implements methods to estimate colonization and
extinction rates (including environmental variables) given presence-absence
data, simulates community assembly, and performs model selection.
Author: Vicente Jimenez [aut, cre],
David Alonso [aut]
Maintainer: Vicente Jimenez <vicente.jimenez.ontiveros@gmail.com>
Diff between island versions 0.2.10 dated 2023-11-29 and 0.2.11 dated 2026-06-03
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS.md | 3 +++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/IBDmodels.html | 11 ++++++----- inst/doc/detectability.html | 9 +++++---- inst/doc/island.html | 23 ++++++++++++----------- man/island.Rd | 3 ++- src/IO_AKAIKE_Model_Selection.c | 6 +++--- 10 files changed, 45 insertions(+), 38 deletions(-)
Title: Generalized Promotion Time Cure Model with Bayesian Shrinkage
Priors
Description: Generalized promotion time cure model (GPTCM) via Bayesian hierarchical modeling for multiscale data integration (Zhao et al. (2025) <doi:10.48550/arXiv.2509.01001>). The Bayesian GPTCMs are applicable for both low- and high-dimensional data.
Author: Zhi Zhao [aut, cre]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between GPTCM versions 1.1.3 dated 2025-10-31 and 2.0.0 dated 2026-06-03
GPTCM-1.1.3/GPTCM/README.md |only GPTCM-1.1.3/GPTCM/man/figures/cran_betas.png |only GPTCM-1.1.3/GPTCM/man/figures/cran_brier.png |only GPTCM-1.1.3/GPTCM/man/figures/cran_etas.png |only GPTCM-1.1.3/GPTCM/man/figures/cran_gammas.png |only GPTCM-1.1.3/GPTCM/man/figures/cran_km.png |only GPTCM-1.1.3/GPTCM/man/figures/cran_zetas.png |only GPTCM-2.0.0/GPTCM/DESCRIPTION | 8 GPTCM-2.0.0/GPTCM/MD5 | 55 - GPTCM-2.0.0/GPTCM/NEWS.md | 32 GPTCM-2.0.0/GPTCM/R/GPTCM.R | 3 GPTCM-2.0.0/GPTCM/R/RcppExports.R | 5 GPTCM-2.0.0/GPTCM/R/plotMCMC.R | 2 GPTCM-2.0.0/GPTCM/build/partial.rdb |binary GPTCM-2.0.0/GPTCM/build/vignette.rds |binary GPTCM-2.0.0/GPTCM/inst/doc/GPTCM.Rmd | 12 GPTCM-2.0.0/GPTCM/inst/doc/GPTCM.html | 12 GPTCM-2.0.0/GPTCM/man/GPTCM-package.Rd | 5 GPTCM-2.0.0/GPTCM/man/GPTCM.Rd | 2 GPTCM-2.0.0/GPTCM/man/figures/fig_betas-1.png |only GPTCM-2.0.0/GPTCM/man/figures/fig_brier-1.png |only GPTCM-2.0.0/GPTCM/man/figures/fig_etas-1.png |only GPTCM-2.0.0/GPTCM/man/figures/fig_gammas-1.png |only GPTCM-2.0.0/GPTCM/man/figures/fig_km-1.png |only GPTCM-2.0.0/GPTCM/man/figures/fig_zetas-1.png |only GPTCM-2.0.0/GPTCM/man/run_mcmc.Rd | 3 GPTCM-2.0.0/GPTCM/src/BVS.cpp | 1370 ++++++++++--------------- GPTCM-2.0.0/GPTCM/src/BVS.h | 61 + GPTCM-2.0.0/GPTCM/src/RcppExports.cpp | 9 GPTCM-2.0.0/GPTCM/src/arms_gibbs.cpp | 66 - GPTCM-2.0.0/GPTCM/src/drive.cpp | 539 +++++---- GPTCM-2.0.0/GPTCM/src/eval_func.cpp | 27 GPTCM-2.0.0/GPTCM/src/eval_func.h | 1 GPTCM-2.0.0/GPTCM/src/simple_gibbs.cpp | 47 GPTCM-2.0.0/GPTCM/vignettes/GPTCM.Rmd | 12 35 files changed, 1032 insertions(+), 1239 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible
outcome to evaluate the effectiveness of a new therapy (the true endpoint) is
difficult to measure. In such a situation, it can be an effective strategy to
replace the true endpoint by a (bio)marker that is easier to measure and that
allows for a prediction of the treatment effect on the true endpoint (a
surrogate endpoint). The package 'Surrogate' allows for an evaluation of the
appropriateness of a candidate surrogate endpoint based on the meta-analytic,
information-theoretic, and causal-inference frameworks. Part of this software
has been developed using funding provided from the European Union's Seventh
Framework Programme for research, technological development and demonstration
(Grant Agreement no 602552), the Special Research Fund (BOF) of Hasselt
University (BOF-number: BOF2OCPO3), GlaxoSmithKline Biologicals, Baekeland
Mandaat (HBC.2022.0145), and Johnson & Johnson Innovative Medicine.
Author: Wim Van Der Elst [cre, aut],
Florian Stijven [aut],
Fenny Ong [aut],
Dries De Witte [aut],
Gokce Deliorman [aut],
Paul Meyvisch [aut],
Alvaro Poveda [aut],
Ariel Alonso [aut],
Hannah Ensor [aut],
Christoper Weir [aut],
Geert Molenberghs [aut]
Maintainer: Wim Van Der Elst <wim.vanderelst@gmail.com>
Diff between Surrogate versions 3.4.1 dated 2025-04-29 and 3.4.2 dated 2026-06-03
DESCRIPTION | 11 MD5 | 157 NAMESPACE | 18 NEWS.md | 10 R/BifixedContCont.R | 359 - R/BimixedContCont.R | 477 - R/ICA.BinBin.Grid.Sample.R | 1460 ++-- R/ICA.Sample.ContCont.R | 381 - R/ICAContCont.R | 395 - R/ICA_contcont_long_cre.R |only R/ICA_contcont_long_galecki.R |only R/ICA_contcont_long_ri.R |only R/MaxEntContCont.R | 85 R/Restrictions.BinBin.R | 195 R/Single.Trial.ContCont.R |only R/Single.Trial.RE.AA.R | 17 R/Summary.Single.Trial.ContCont.R |only R/SummaryMetaAnalyticMTSContCont.R | 400 - R/SummarySPPBinBin.R | 196 R/SurvSurv.R | 489 - R/UnifixedContCont.R | 400 - R/UnimixedContCont.R | 430 - R/plot.MetaAnalyticMTS.R | 187 R/plot.Single.Trial.ContCont.R |only R/plot_ICABinBin.R | 2778 ++++---- R/summary_ICABinBin.R | 354 - README.md | 68 data/ARMD_S.rda |only man/ARMD_S.Rd |only man/BifixedContCont.Rd | 277 man/BimixedContCont.Rd | 283 man/ICA.Sample.ContCont.Rd | 157 man/ICAContCont.Rd | 181 man/ICA_contcont_long_cre.Rd |only man/ICA_contcont_long_galecki.Rd |only man/ICA_contcont_long_ri.Rd |only man/Single.Trial.ContCont.Rd |only man/Single.Trial.RE.AA.Rd | 226 man/UnifixedContCont.Rd | 261 man/UnimixedContCont.Rd | 245 man/plot.CausalInference.Rd | 155 man/plot.ICABinBin.Rd | 130 man/plot.MetaAnalytic.Rd | 230 man/summary.gen.Rd | 166 tests/testthat.R | 24 tests/testthat/_snaps/fit_model_SurvSurv/plot-function-for-gof.svg | 1044 +-- tests/testthat/_snaps/goodness_of_fit_SurvSurv/marginal-survival-functions-gof.svg | 140 tests/testthat/_snaps/goodness_of_fit_SurvSurv/mean-surrogate-before-dying-gof.svg | 832 +- tests/testthat/_snaps/goodness_of_fit_SurvSurv/prob-of-dying-wo-progression-gof.svg | 1044 +-- tests/testthat/_snaps/goodness_of_fit_copula_models/association-gof-0-contcont-schizo.svg | 1186 +-- tests/testthat/_snaps/goodness_of_fit_copula_models/association-gof-0-ordcont-schizo.svg | 394 - tests/testthat/_snaps/goodness_of_fit_copula_models/association-gof-0-ordord-schizo.svg | 130 tests/testthat/_snaps/goodness_of_fit_copula_models/association-gof-1-contcont-schizo.svg | 3300 +++++----- tests/testthat/_snaps/goodness_of_fit_copula_models/association-gof-1-ordcont-schizo.svg | 762 +- tests/testthat/_snaps/goodness_of_fit_copula_models/association-gof-1-ordord-schizo.svg | 130 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-s0-contcont-schizo.svg | 120 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-s0-ordcont-schizo.svg | 114 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-s0-ordord-schizo.svg | 130 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-s1-contcont-schizo.svg | 126 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-s1-ordcont-schizo.svg | 118 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-s1-ordord-schizo.svg | 130 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-t0-contcont-schizo.svg | 136 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-t0-ordcont-schizo.svg | 130 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-t0-ordord-schizo.svg | 130 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-t1-contcont-schizo.svg | 144 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-t1-ordcont-schizo.svg | 130 tests/testthat/_snaps/goodness_of_fit_copula_models/marginal-gof-t1-ordord-schizo.svg | 130 tests/testthat/fixtures/sensitivity-analysis-results.R | 198 tests/testthat/test-FederatedApproachStage1.R | 6 tests/testthat/test-FederatedApproachStage2.R | 6 tests/testthat/test-ICA_ContCont_copula.R | 64 tests/testthat/test-ICA_OrdOrd_copula.R | 126 tests/testthat/test-ICA_contcont_long_cre.R |only tests/testthat/test-ICA_contcont_long_galecki.R |only tests/testthat/test-ICA_contcont_long_ri.R |only tests/testthat/test-MetaAnalyticSurvBin.R | 44 tests/testthat/test-MetaAnalyticSurvCat.R | 44 tests/testthat/test-MetaAnalyticSurvCont.R | 46 tests/testthat/test-MetaAnalyticSurvSurv.R | 60 tests/testthat/test-copula_utils.R | 182 tests/testthat/test-goodness_of_fit_copula_models.R | 280 tests/testthat/test-likelihood_copula_models.R | 314 tests/testthat/test-sensitivity_analysis_BinCont_copula.R | 88 tests/testthat/test-sensitivity_analysis_SurvSurv.R | 318 tests/testthat/test-sensitivity_intervals.R | 468 - tests/testthat/test_ICA_alpha_ContCont.R | 328 tests/testthat/test_ICA_t.R | 218 87 files changed, 12278 insertions(+), 12214 deletions(-)
Title: Search Engine Optimization, Social Metadata, and Site
Verification Helpers for 'Shiny' Apps
Description: Utilities for injecting search engine optimization (SEO), Open Graph, Twitter, site verification,
and schema.org metadata into 'Shiny' applications from YAML files or named lists.
Author: Rolf Lindgren [aut, cre]
Maintainer: Rolf Lindgren <rolf@grendel.no>
Diff between shinyseo versions 0.1.0 dated 2026-04-29 and 0.1.1 dated 2026-06-03
DESCRIPTION | 19 ++-- MD5 | 27 +++---- NEWS.md |only R/defaults.R | 11 ++ R/social_meta.R | 33 +++++++- README.md | 41 ++++++++++ build/vignette.rds |binary inst/doc/API.Rmd | 28 ++++++- inst/doc/API.html | 87 ++++++++++++++++++---- inst/doc/REFERENCE.Rmd | 99 +++++++++++++++---------- inst/doc/REFERENCE.html | 146 ++++++++++++++++++++++---------------- man/social_meta.Rd | 14 +++ tests/testthat/test-social_meta.R | 67 ++++++++++++++++- vignettes/API.Rmd | 28 ++++++- vignettes/REFERENCE.Rmd | 99 +++++++++++++++---------- 15 files changed, 504 insertions(+), 195 deletions(-)
Title: Visualizing Multilevel Data with Parallel Tree Plots
Description: Provides two functions: Group_function() and Parallel_Tree().
Group_function() applies a given function (e.g., mean()) to input
variable(s) by group across levels of a multilevel data structure, with
additional data management options. Parallel_Tree() uses 'ggplot2' to
create parallel coordinate plots (technically a facsimile of parallel
coordinate plots in a Cartesian coordinate system). Used in combination,
these functions can create parallel tree plots, a variant of parallel
coordinate plots useful for visualizing multilevel data.
Author: Patrick O'Keefe [aut, cre]
Maintainer: Patrick O'Keefe <pgok15@gmail.com>
This is a re-admission after prior archival of version 0.1.3 dated 2019-09-17
Diff between ParallelTree versions 0.1.3 dated 2019-09-17 and 0.2.0 dated 2026-06-03
DESCRIPTION | 28 +++++++++++++++++----------- MD5 | 12 ++++++------ NAMESPACE | 4 +++- R/Group_Function.R | 6 +++--- R/Parallel_Tree.R | 21 ++++++++++++--------- man/Group_function.Rd | 12 ++++++++++-- man/Parallel_Tree.Rd | 22 ++++++++++++++++------ 7 files changed, 67 insertions(+), 38 deletions(-)
Title: Enrich Figures and Tables with Custom Headers and Footers and
More
Description: A simple and flexible tool designed to create enriched figures and tables by providing a way to add text
around them through predefined or custom layouts.
Any input which is convertible to 'grob' is supported, like 'ggplot', 'gt' or 'flextable'.
Based on R 'grid' graphics, for more details see Paul Murrell (2018) <doi:10.1201/9780429422768>.
Author: Maciej Nasinski [aut, cre],
Alexandra Wall [aut],
Sarah Robson [aut],
Pritish Dash [aut],
Jennifer Winick-Ng [aut],
Lily Nan [ctb],
Alphonse Kwizera [ctb],
Agota Bodoni [ctb],
Eilis Meldrum-Dolan [ctb],
Gary Cao [ctb],
Monika Beh [ctb],
UCB S.A., Bel [...truncated...]
Maintainer: Maciej Nasinski <Maciej.Nasinski@ucb.com>
Diff between gridify versions 0.7.7 dated 2026-02-05 and 0.8.1 dated 2026-06-03
gridify-0.7.7/gridify/R/grid_utils.R |only gridify-0.7.7/gridify/vignettes/tables |only gridify-0.8.1/gridify/DESCRIPTION | 16 gridify-0.8.1/gridify/MD5 | 82 +-- gridify-0.8.1/gridify/NEWS.md | 27 + gridify-0.8.1/gridify/R/complex_layout.R | 20 gridify-0.8.1/gridify/R/gridify-classes.R | 73 ++ gridify-0.8.1/gridify/R/gridify-methods.R | 20 gridify-0.8.1/gridify/R/gridify-utils.R |only gridify-0.8.1/gridify/R/pagination_utils.R | 41 + gridify-0.8.1/gridify/R/pharma_layout.R | 20 gridify-0.8.1/gridify/R/simple_layout.R | 13 gridify-0.8.1/gridify/README.md | 32 + gridify-0.8.1/gridify/inst/UML/UML_graph.md | 1 gridify-0.8.1/gridify/inst/WORDLIST | 12 gridify-0.8.1/gridify/inst/doc/create_custom_layout.html | 176 +++---- gridify-0.8.1/gridify/inst/doc/gridify.Rmd | 21 gridify-0.8.1/gridify/inst/doc/gridify.html | 297 ++++++------ gridify-0.8.1/gridify/inst/doc/simple_examples.R | 59 ++ gridify-0.8.1/gridify/inst/doc/simple_examples.Rmd | 94 +++ gridify-0.8.1/gridify/inst/doc/simple_examples.html | 279 ++++++++--- gridify-0.8.1/gridify/inst/doc/transparency.Rmd | 11 gridify-0.8.1/gridify/inst/doc/transparency.html | 102 ++-- gridify-0.8.1/gridify/man/complex_layout.Rd | 12 gridify-0.8.1/gridify/man/gpar_args.Rd | 2 gridify-0.8.1/gridify/man/gpar_call.Rd | 2 gridify-0.8.1/gridify/man/grid_unit_type.Rd | 2 gridify-0.8.1/gridify/man/gridifyObject-class.Rd | 16 gridify-0.8.1/gridify/man/gridifyObject.Rd | 17 gridify-0.8.1/gridify/man/is_flexible_grob.Rd |only gridify-0.8.1/gridify/man/object_viewport_height_expr.Rd |only gridify-0.8.1/gridify/man/paginate_table.Rd | 6 gridify-0.8.1/gridify/man/pharma_layout_A4.Rd | 15 gridify-0.8.1/gridify/man/pharma_layout_base.Rd | 12 gridify-0.8.1/gridify/man/pharma_layout_letter.Rd | 15 gridify-0.8.1/gridify/man/simple_layout.Rd | 12 gridify-0.8.1/gridify/tests/testthat/test-gridifyObject.R | 55 ++ gridify-0.8.1/gridify/tests/testthat/test_layouts.R | 11 gridify-0.8.1/gridify/tests/testthat/test_paginate_table.R | 51 +- gridify-0.8.1/gridify/tests/testthat/test_print.R | 15 gridify-0.8.1/gridify/tests/testthat/test_show.R | 22 gridify-0.8.1/gridify/tests/testthat/test_viewport_height.R |only gridify-0.8.1/gridify/vignettes/gridify.Rmd | 21 gridify-0.8.1/gridify/vignettes/simple_examples.Rmd | 94 +++ gridify-0.8.1/gridify/vignettes/transparency.Rmd | 11 45 files changed, 1342 insertions(+), 445 deletions(-)
Title: Tools for AEMET Climate Data
Description: Download meteorological and climate data from the Spanish
Meteorological Agency (AEMET) directly in R using the AEMET API.
Create scientific visualizations, including climate charts, climate
time series trend analyses, temperature and precipitation anomaly
maps, warming stripes and climatograms.
Author: Manuel Pizarro [aut, cph] ,
Diego Hernangomez [aut, cre] ,
Gema Fernandez-Aviles [aut] ,
AEMET [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between climaemet versions 1.5.1 dated 2026-03-23 and 1.6.0 dated 2026-06-03
climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-api-query.md |only climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-forecast-beach.md |only climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-forecast-daily.md |only climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-forecast-hourly.md |only climaemet-1.6.0/climaemet/DESCRIPTION | 26 climaemet-1.6.0/climaemet/MD5 | 241 - climaemet-1.6.0/climaemet/NEWS.md | 221 - climaemet-1.6.0/climaemet/R/aemet-alert-zones.R | 222 - climaemet-1.6.0/climaemet/R/aemet-alerts.R | 796 ++--- climaemet-1.6.0/climaemet/R/aemet-api-key.R | 438 +- climaemet-1.6.0/climaemet/R/aemet-api-query.R | 980 +++--- climaemet-1.6.0/climaemet/R/aemet-beaches.R | 199 - climaemet-1.6.0/climaemet/R/aemet-daily.R | 220 - climaemet-1.6.0/climaemet/R/aemet-extremes.R | 299 - climaemet-1.6.0/climaemet/R/aemet-forecast-beach.R | 368 +- climaemet-1.6.0/climaemet/R/aemet-forecast-daily.R | 269 - climaemet-1.6.0/climaemet/R/aemet-forecast-fires.R | 303 - climaemet-1.6.0/climaemet/R/aemet-forecast-hourly.R | 488 +-- climaemet-1.6.0/climaemet/R/aemet-forecast-utils.R | 85 climaemet-1.6.0/climaemet/R/aemet-last-obs.R | 245 - climaemet-1.6.0/climaemet/R/aemet-monthly.R | 653 +--- climaemet-1.6.0/climaemet/R/aemet-normal.R | 138 climaemet-1.6.0/climaemet/R/aemet-stations.R | 53 climaemet-1.6.0/climaemet/R/climaemet-news.R | 7 climaemet-1.6.0/climaemet/R/climaemet-package.R | 27 climaemet-1.6.0/climaemet/R/climatogram.R | 1527 ++++------ climaemet-1.6.0/climaemet/R/data.R | 231 - climaemet-1.6.0/climaemet/R/helpers-api.R | 202 - climaemet-1.6.0/climaemet/R/helpers.R | 334 +- climaemet-1.6.0/climaemet/R/stripes.R | 902 ++--- climaemet-1.6.0/climaemet/R/utils.R | 150 climaemet-1.6.0/climaemet/R/windrose.R | 245 - climaemet-1.6.0/climaemet/README.md | 154 - climaemet-1.6.0/climaemet/build/vignette.rds |binary climaemet-1.6.0/climaemet/data/aemet_munic.rda |binary climaemet-1.6.0/climaemet/data/climaemet_9434_climatogram.rda |binary climaemet-1.6.0/climaemet/data/climaemet_9434_temp.rda |binary climaemet-1.6.0/climaemet/data/climaemet_9434_wind.rda |binary climaemet-1.6.0/climaemet/inst/CITATION | 34 climaemet-1.6.0/climaemet/inst/COPYRIGHTS | 310 +- climaemet-1.6.0/climaemet/inst/REFERENCES.bib | 32 climaemet-1.6.0/climaemet/inst/WORDLIST | 71 climaemet-1.6.0/climaemet/inst/doc/climaemet.html | 88 climaemet-1.6.0/climaemet/inst/doc/climaemet.qmd | 112 climaemet-1.6.0/climaemet/inst/doc/extending-climaemet.html | 46 climaemet-1.6.0/climaemet/inst/doc/extending-climaemet.qmd | 131 climaemet-1.6.0/climaemet/inst/schemaorg.json | 10 climaemet-1.6.0/climaemet/man/aemet_alert_zones.Rd | 157 - climaemet-1.6.0/climaemet/man/aemet_alerts.Rd | 221 - climaemet-1.6.0/climaemet/man/aemet_api_key.Rd | 143 climaemet-1.6.0/climaemet/man/aemet_beaches.Rd | 160 - climaemet-1.6.0/climaemet/man/aemet_daily.Rd | 225 - climaemet-1.6.0/climaemet/man/aemet_detect_api_key.Rd | 80 climaemet-1.6.0/climaemet/man/aemet_extremes_clim.Rd | 148 climaemet-1.6.0/climaemet/man/aemet_forecast.Rd | 350 +- climaemet-1.6.0/climaemet/man/aemet_forecast_beaches.Rd | 184 - climaemet-1.6.0/climaemet/man/aemet_forecast_fires.Rd | 197 - climaemet-1.6.0/climaemet/man/aemet_forecast_utils.Rd | 201 - climaemet-1.6.0/climaemet/man/aemet_last_obs.Rd | 136 climaemet-1.6.0/climaemet/man/aemet_monthly.Rd | 198 - climaemet-1.6.0/climaemet/man/aemet_munic.Rd | 90 climaemet-1.6.0/climaemet/man/aemet_normal.Rd | 162 - climaemet-1.6.0/climaemet/man/aemet_stations.Rd | 126 climaemet-1.6.0/climaemet/man/climaemet-package.Rd | 75 climaemet-1.6.0/climaemet/man/climaemet_9434_climatogram.Rd | 82 climaemet-1.6.0/climaemet/man/climaemet_9434_temp.Rd | 72 climaemet-1.6.0/climaemet/man/climaemet_9434_wind.Rd | 76 climaemet-1.6.0/climaemet/man/climaemet_news.Rd | 55 climaemet-1.6.0/climaemet/man/climatestripes_station.Rd | 180 - climaemet-1.6.0/climaemet/man/climatogram_normal.Rd | 158 - climaemet-1.6.0/climaemet/man/climatogram_period.Rd | 174 - climaemet-1.6.0/climaemet/man/day_of_year.Rd | 61 climaemet-1.6.0/climaemet/man/dms2decdegrees.Rd | 69 climaemet-1.6.0/climaemet/man/figures/README-spatial-1.png |binary climaemet-1.6.0/climaemet/man/get_data_aemet.Rd | 133 climaemet-1.6.0/climaemet/man/ggclimat_walter_lieth.Rd | 263 - climaemet-1.6.0/climaemet/man/ggstripes.Rd | 170 - climaemet-1.6.0/climaemet/man/ggwindrose.Rd | 251 - climaemet-1.6.0/climaemet/man/roxygen |only climaemet-1.6.0/climaemet/man/windrose_days.Rd | 176 - climaemet-1.6.0/climaemet/man/windrose_period.Rd | 186 - climaemet-1.6.0/climaemet/tests/testthat.R | 24 climaemet-1.6.0/climaemet/tests/testthat/_snaps/aemet-alert-zones.md | 4 climaemet-1.6.0/climaemet/tests/testthat/_snaps/aemet-alerts.md | 2 climaemet-1.6.0/climaemet/tests/testthat/_snaps/aemet-api-key.md | 19 climaemet-1.6.0/climaemet/tests/testthat/_snaps/aemet-beaches.md | 4 climaemet-1.6.0/climaemet/tests/testthat/_snaps/aemet-daily.md | 22 climaemet-1.6.0/climaemet/tests/testthat/_snaps/aemet-extremes.md | 8 climaemet-1.6.0/climaemet/tests/testthat/_snaps/aemet-forecast-fires.md | 16 climaemet-1.6.0/climaemet/tests/testthat/_snaps/aemet-last-obs.md | 48 climaemet-1.6.0/climaemet/tests/testthat/_snaps/aemet-monthly.md | 176 - climaemet-1.6.0/climaemet/tests/testthat/_snaps/aemet-normal.md | 48 climaemet-1.6.0/climaemet/tests/testthat/_snaps/aemet-stations.md | 32 climaemet-1.6.0/climaemet/tests/testthat/_snaps/climatogram.md | 43 climaemet-1.6.0/climaemet/tests/testthat/_snaps/helpers.md | 236 - climaemet-1.6.0/climaemet/tests/testthat/_snaps/stripes.md | 99 climaemet-1.6.0/climaemet/tests/testthat/_snaps/utils.md | 44 climaemet-1.6.0/climaemet/tests/testthat/_snaps/windrose.md | 222 - climaemet-1.6.0/climaemet/tests/testthat/helper-funs.R |only climaemet-1.6.0/climaemet/tests/testthat/setup.R |only climaemet-1.6.0/climaemet/tests/testthat/test-aemet-alert-zones.R | 76 climaemet-1.6.0/climaemet/tests/testthat/test-aemet-alerts.R | 172 - climaemet-1.6.0/climaemet/tests/testthat/test-aemet-api-key.R | 235 + climaemet-1.6.0/climaemet/tests/testthat/test-aemet-api-query.R | 395 +- climaemet-1.6.0/climaemet/tests/testthat/test-aemet-beaches.R | 78 climaemet-1.6.0/climaemet/tests/testthat/test-aemet-daily.R | 233 - climaemet-1.6.0/climaemet/tests/testthat/test-aemet-extremes.R | 25 climaemet-1.6.0/climaemet/tests/testthat/test-aemet-forecast-beach.R | 101 climaemet-1.6.0/climaemet/tests/testthat/test-aemet-forecast-daily.R | 150 climaemet-1.6.0/climaemet/tests/testthat/test-aemet-forecast-fires.R | 69 climaemet-1.6.0/climaemet/tests/testthat/test-aemet-forecast-hourly.R | 117 climaemet-1.6.0/climaemet/tests/testthat/test-aemet-forecast-utils.R |only climaemet-1.6.0/climaemet/tests/testthat/test-aemet-last-obs.R | 89 climaemet-1.6.0/climaemet/tests/testthat/test-aemet-monthly.R | 196 - climaemet-1.6.0/climaemet/tests/testthat/test-aemet-normal.R | 80 climaemet-1.6.0/climaemet/tests/testthat/test-aemet-stations.R | 81 climaemet-1.6.0/climaemet/tests/testthat/test-climatogram.R | 181 - climaemet-1.6.0/climaemet/tests/testthat/test-helpers-api.R |only climaemet-1.6.0/climaemet/tests/testthat/test-helpers.R | 94 climaemet-1.6.0/climaemet/tests/testthat/test-stripes.R | 148 climaemet-1.6.0/climaemet/tests/testthat/test-utils.R | 40 climaemet-1.6.0/climaemet/tests/testthat/test-windrose.R | 234 - climaemet-1.6.0/climaemet/vignettes/climaemet.qmd | 112 climaemet-1.6.0/climaemet/vignettes/example-gif.gif |binary climaemet-1.6.0/climaemet/vignettes/extending-climaemet.qmd | 131 climaemet-1.6.0/climaemet/vignettes/spatial-1.png |binary 126 files changed, 10039 insertions(+), 9861 deletions(-)
Title: Call 'EPANET' Functions to Simulate Pipe Networks
Description: Enables simulation of water piping networks using 'EPANET'.
The package provides functions from the 'EPANET' programmer's toolkit as R
functions so that basic or customized simulations can be carried out from R.
The package uses 'EPANET' version 2.2 from Open Water Analytics
<https://github.com/OpenWaterAnalytics/EPANET/releases/tag/v2.2>.
Author: Ernesto Arandia [aut],
Bradley Eck [aut, cre],
Lew Rossman [aut],
Michael Tryby [ctb],
Sam Hatchett [ctb],
Feng Shang [ctb],
James Uber [ctb],
Tom Taxon [ctb],
Hyoungmin Woo [ctb],
Jinduan Chen [ctb],
Yunier Soad [ctb],
Mike Kane [ctb],
Demetrios Eli [...truncated...]
Maintainer: Bradley Eck <brad@bradeck.net>
Diff between epanet2toolkit versions 1.0.8 dated 2024-12-16 and 1.0.9 dated 2026-06-03
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++++++------ src/rules.c | 12 ++++++++---- tests/testthat/Net1-getrules.rpt |only tests/testthat/Net1-ld.rpt |only tests/testthat/Net1-rt.bin |only tests/testthat/Net1.rpt | 6 +++--- tests/testthat/Net2.rpt | 6 +++--- tests/testthat/Net3.bin |binary tests/testthat/Net3.rpt | 6 +++--- tests/testthat/pattern-tests-cawd.rpt |only tests/testthat/pattern-tests-fqta.rpt |only tests/testthat/pattern-tests-iawb.rpt |only tests/testthat/pattern-tests-mluf.rpt |only tests/testthat/pattern-tests-szak.rpt |only 15 files changed, 35 insertions(+), 23 deletions(-)
More information about epanet2toolkit at CRAN
Permanent link
Title: Dynamic Relational Event Analysis and Modeling
Description: A set of tools for relational and event analysis, including two- and one-mode network brokerage and structural measures, and helper functions optimized for relational event analysis with large datasets, including creating relational risk sets, computing network statistics, estimating relational event models, and simulating relational event sequences. For more information on relational event models, see Butts (2008) <doi:10.1111/j.1467-9531.2008.00203.x>, Lerner and Lomi (2020) <doi:10.1017/nws.2019.57>, Bianchi et al. (2024) <doi:10.1146/annurev-statistics-040722-060248>, and Butts et al. (2023) <doi:10.1017/nws.2023.9>. In terms of the structural measures in this package, see Leal (2025) <doi:10.1177/00491241251322517>, Burchard and Cornwell (2018) <doi:10.1016/j.socnet.2018.04.001>, and Fujimoto et al. (2018) <doi:10.1017/nws.2018.11>. This package was developed with support from the National Science Foundation’s (NSF) Human Networks and Data [...truncated...]
Author: Kevin A. Carson [aut, cre] ,
Diego F. Leal [aut]
Maintainer: Kevin A. Carson <kacarson@arizona.edu>
Diff between dream versions 2.1.1 dated 2026-05-29 and 2.1.2 dated 2026-06-03
DESCRIPTION | 6 MD5 | 13 - NAMESPACE | 6 NEWS.md | 11 + R/dream_estimate.R | 376 ++++++++++++++++++++++++++++++++++++++++++++- man/estimate_rem.Rd | 4 man/gof_rem.Rd |only man/plot.dream_rem.Rd |only man/residuals.dream_rem.Rd |only 9 files changed, 407 insertions(+), 9 deletions(-)
Title: Various Methods for the Goodness-of-Fit Problem in D>1
Dimensions
Description: The routine gof_test() in this package runs the
goodness-of-fit test using various test statistic for multivariate data.
Models under the null hypothesis can either be simple or allow for parameter estimation.
p values are found via the parametric bootstrap (simulation).
The routine gof_test_adjusted_pvalues() runs several tests and then finds a
p value adjusted for simultaneous inference.
The routine gof_power() allows the estimation of the power of the tests.
hybrid_test() and hybrid_power() do the same by first generating a Monte Carlo data set under
the null hypothesis and then running a number of two-sample methods.
The routine run.studies() allows a user to quickly study the power of a new method and
how it compares to those included in the package via a large number of case studies.
For details of the methods and references see the included vignettes.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between MDgof versions 1.0.0 dated 2026-02-12 and 1.0.1 dated 2026-06-03
DESCRIPTION | 6 +- MD5 | 22 ++++---- NEWS.md | 2 R/data.R | 17 ++++++ R/run.studies.R | 47 +++++++++++++---- data/power_studies_cont_D5_hybrid_results.rda |only data/power_studies_cont_hybrid_results.rda |binary data/power_studies_cont_nMC5_D5_hybrid_results.rda |only data/power_studies_cont_nMC5_hybrid_results.rda |binary inst/doc/MDgof-Case-Studies.html | 56 ++++++++++----------- inst/doc/MDgof-Methods.html | 24 ++++----- man/power_studies_cont_D5_hybrid_results.Rd |only man/power_studies_cont_nMC5_D5_hybrid_results.Rd |only man/run.studies.Rd | 9 +++ 14 files changed, 118 insertions(+), 65 deletions(-)
Title: Zero-Inflated Models for Count Time Series with Excess Zeros
Description: Analyze count time series with excess zeros.
Two types of statistical models are supported: Markov regression by Yang et al.
(2013) <doi:10.1016/j.stamet.2013.02.001> and state-space models by Yang et al.
(2015) <doi:10.1177/1471082X14535530>. They are also known as observation-driven and
parameter-driven models respectively in the time series literature. The functions used for
Markov regression or observation-driven models can also be used to fit ordinary regression models
with independent data under the zero-inflated Poisson (ZIP) or zero-inflated negative binomial (ZINB)
assumption. Besides, the package contains some miscellaneous functions to compute density, distribution,
quantile, and generate random numbers from ZIP and ZINB distributions.
Author: Ming Yang [aut, cre],
Gideon Zamba [aut],
Joseph Cavanaugh [aut]
Maintainer: Ming Yang <hustyangming@gmail.com>
Diff between ZIM versions 1.1.0 dated 2018-08-28 and 1.1.2 dated 2026-06-03
DESCRIPTION | 24 +++++++++++++----------- MD5 | 37 +++++++++++++++++++++++-------------- R/dzim.R | 2 +- R/misc.R | 16 +++++++++++----- R/package.R | 43 +++++++++++++++++++++++++++++++++---------- README.md | 33 +++++++++++++++++++++------------ build |only inst |only man/ZIM-package.Rd | 1 - man/bshift.Rd | 10 ++++++---- man/dzim.Rd | 12 ++++++++++-- man/dzim.control.Rd | 14 +++++++++++--- man/injury.Rd | 1 + man/syph.Rd | 12 +++++++----- man/zim.Rd | 12 ++++++++++-- man/zim.control.Rd | 14 +++++++++++--- man/zim.fit.Rd | 11 +++++++++-- tests |only vignettes |only 19 files changed, 167 insertions(+), 75 deletions(-)
Title: Penalised Regression with Multiple Sets of Prior Effects
('Transfer Learning')
Description: Improves the predictive performance of ridge and lasso regression exploiting one or more sources of prior information on the importance and direction of effects (Rauschenberger and others 2023, <doi:10.1093/bioinformatics/btad680>). For running the vignette (optional), install 'fwelnet' and 'ecpc' from <https://github.com/kjytay/fwelnet> and <https://github.com/Mirrelijn/ecpc>, respectively.
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger@uni.lu>
Diff between transreg versions 1.0.6 dated 2026-04-10 and 1.0.7 dated 2026-06-03
DESCRIPTION | 6 - MD5 | 6 - inst/doc/article.html | 245 +++----------------------------------------------- tests/testthat/test.R | 3 4 files changed, 25 insertions(+), 235 deletions(-)
Title: Stacked Elastic Net
Description: Implements stacked elastic net regression (Rauschenberger 2021 <doi:10.1093/bioinformatics/btaa535>). The elastic net generalises ridge and lasso regularisation (Zou 2005 <doi:10.1111/j.1467-9868.2005.00503.x>). Instead of fixing or tuning the mixing parameter alpha, we combine multiple alpha by stacked generalisation (Wolpert 1992 <doi:10.1016/S0893-6080(05)80023-1>).
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger@uni.lu>
Diff between starnet versions 1.0.1 dated 2026-04-08 and 1.0.2 dated 2026-06-03
DESCRIPTION | 6 MD5 | 10 - inst/doc/article.html | 246 ++------------------------------------ inst/doc/script.html | 319 +++++++++----------------------------------------- inst/doc/starnet.html | 319 +++++++++----------------------------------------- tests/testthat/test.R | 3 6 files changed, 150 insertions(+), 753 deletions(-)
Title: Uniformity Tests on the Circle, Sphere, and Hypersphere
Description: Implementation of uniformity tests on the circle and
(hyper)sphere. The main function of the package is unif_test(), which
conveniently collects more than 35 tests for assessing uniformity on
S^{p-1} = {x in R^p : ||x|| = 1}, p >= 2. The test statistics are
implemented in the unif_stat() function, which allows computing several
statistics for different samples within a single call, thus facilitating
Monte Carlo experiments. Furthermore, the unif_stat_MC() function allows
parallelizing them in a simple way. The asymptotic null distributions of
the statistics are available through the function unif_stat_distr(). The
core of 'sphunif' is coded in C++ by relying on the 'Rcpp' package.
The package also provides several novel datasets and gives the replicability
for the data applications/simulations in GarcÃa-Portugués et al. (2021)
<doi:10.1007/978-3-030-69944-4_12>, GarcÃa-Portugués et al. (2023)
<doi:10.3150/21-BEJ1454>, Fernández-de-Marcos and
GarcÃa-Portugués (2024) <d [...truncated...]
Author: Eduardo Garcia-Portugues [aut, cre] ,
Thomas Verdebout [aut] ,
Alberto Fernandez-de-Marcos [ctb],
Paula Navarro [ctb]
Maintainer: Eduardo Garcia-Portugues <edgarcia@est-econ.uc3m.es>
Diff between sphunif versions 1.4.3 dated 2025-11-09 and 1.4.4 dated 2026-06-03
DESCRIPTION | 10 ++-- MD5 | 16 ++++--- NEWS.md | 4 + R/data.R | 66 +++++++++++++++++++++++++++++++ build/partial.rdb |binary build/vignette.rds |binary data/cmb.rda |only inst/WORDLIST | 34 ++++++++++------ inst/doc/sphunif.html | 105 ++++++++++++++++++++++++-------------------------- man/cmb.Rd |only 10 files changed, 158 insertions(+), 77 deletions(-)
Title: 64-Bit Extension of the SPArse Matrix R Package 'spam'
Description: Provides the Fortran code of the R package 'spam'
with 64-bit integers. Loading this package together with the R package
spam enables the sparse matrix class spam to handle huge sparse matrices
with more than 2^31-1 non-zero elements.
Documentation is provided in Gerber, Moesinger and Furrer (2017) <doi:10.1016/j.cageo.2016.11.015>.
Author: Reinhard Furrer [aut, cre] ,
Florian Gerber [aut] ,
Roman Flury [aut] ,
Daniel Gerber [ctb],
Kaspar Moesinger [ctb],
Youcef Saad [ctb] ,
Esmond G. Ng [ctb] ,
Barry W. Peyton [ctb] ,
Joseph W.H. Liu [ctb] ,
Alan D. George [ctb] ,
Lehoucq B. Rich [ctb] [...truncated...]
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>
Diff between spam64 versions 2.10-0 dated 2023-10-17 and 2.11-4 dated 2026-06-03
DESCRIPTION | 17 +++++++++-------- MD5 | 6 +++--- inst/CITATION | 6 +++--- src/xybind.f | 33 +++++++++++++++++++++++++++++++++ 4 files changed, 48 insertions(+), 14 deletions(-)
Title: Operationalizing Social Determinants of Health Data for
Researchers
Description: Accesses raw data via API and calculates social
determinants of health measures for user-specified locations in the
US, returning them in tidyverse- and sf-compatible data frames.
Author: Nik Krieger [aut, cre],
Jarrod Dalton [aut],
Cindy Wang [aut],
Adam Perzynski [aut],
National Institutes of Health/National Institute on Aging [fnd] . All of its contents
are solely the responsibility of the authors and do not necessarily
represent t [...truncated...]
Maintainer: Nik Krieger <nikkrieger@gmail.com>
Diff between sociome versions 3.0.0 dated 2026-01-10 and 3.0.1 dated 2026-06-03
DESCRIPTION | 6 LICENSE | 2 MD5 | 86 - NEWS.md | 377 +++---- R/calculate_adi.R | 1348 +++++++++++++-------------- R/census_api_key.R | 14 R/centers.R | 956 +++++++++---------- R/data_documentation.R | 304 +++--- R/dissimilarity.R | 294 ++--- R/get_adi.R | 583 +++++------ R/get_geoids.R | 249 ++-- R/get_tidycensus.R | 845 ++++++++-------- R/ref_area.R | 600 ++++++------ R/setup.R | 2 R/synthetic_population.R | 692 ++++++------- R/utils-pipe.R | 24 R/validation.R | 858 ++++++++--------- man/acs_age_sex_race_ethnicity_vars.Rd | 64 - man/acs_vars.Rd | 102 +- man/append_dissimilarities.Rd | 178 +-- man/calculate_adi.Rd | 144 +- man/census_api_key.Rd | 16 man/dataset_year_geography_availability.Rd | 54 - man/decennial_age_sex_race_ethnicity_vars.Rd | 66 - man/decennial_vars.Rd | 54 - man/get_adi.Rd | 10 man/get_areas_near_coordinates.Rd | 322 +++--- man/get_geoids.Rd | 250 ++--- man/lon_lat_from_area.Rd | 122 +- man/pipe.Rd | 24 man/state_geoids.Rd | 48 man/synthetic_population.Rd | 360 +++---- tests/testthat.R | 24 tests/testthat/_snaps/get_geoids.md | 51 - tests/testthat/_snaps/ref_area.md | 3 tests/testthat/helper-setup.R | 2 tests/testthat/test-dissimilarity.R | 52 - tests/testthat/test-get_adi.R | 272 ++--- tests/testthat/test-get_geoids.R | 519 +++++----- tests/testthat/test-get_tidycensus.R | 14 tests/testthat/test-ref_area.R | 899 +++++++++--------- tests/testthat/test-synthetic_population.R | 94 - tests/testthat/test-validators.R | 244 ++-- tests/testthat/test_area_population.R | 114 +- 44 files changed, 5661 insertions(+), 5681 deletions(-)
Title: Radix Tree and Trie-Based String Distances
Description: A collection of Radix Tree and Trie algorithms for finding similar sequences and calculating sequence distances (Levenshtein and other distance metrics). This work was inspired by a trie implementation in Python: "Fast and Easy Levenshtein distance using a Trie." Hanov (2011) <https://stevehanov.ca/blog/index.php?id=114>. It also includes a modified version of the Starcode all-pairs search algorithm (Zorita, Cuscó, and Filion 2015) <doi:10.1093/bioinformatics/btv053>.
Author: Travers Ching [aut, cre, cph],
Martin Moene [ctb, cph] ,
Steve Hanov [ctb] ,
Martin Leitner-Ankerl [ctb] ,
Eduard Zorita [ctb] ,
Pol Cusco [ctb] ,
Guillaume J. Filion [ctb]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between seqtrie versions 0.3.5 dated 2025-10-20 and 0.4.0 dated 2026-06-03
seqtrie-0.3.5/seqtrie/R/RadixForest.R |only seqtrie-0.3.5/seqtrie/R/RadixTree.R |only seqtrie-0.3.5/seqtrie/R/covid_cdr3.R |only seqtrie-0.3.5/seqtrie/inst/fix_rd_subsections.R |only seqtrie-0.3.5/seqtrie/tests/test_single_gap_search.R |only seqtrie-0.4.0/seqtrie/ChangeLog | 7 seqtrie-0.4.0/seqtrie/DESCRIPTION | 43 seqtrie-0.4.0/seqtrie/MD5 | 135 seqtrie-0.4.0/seqtrie/NAMESPACE | 17 seqtrie-0.4.0/seqtrie/R/RadixForestR6.R |only seqtrie-0.4.0/seqtrie/R/RadixS7.R |only seqtrie-0.4.0/seqtrie/R/RadixTreeR6.R |only seqtrie-0.4.0/seqtrie/R/RadixTree_search_helpers.R | 277 + seqtrie-0.4.0/seqtrie/R/RcppExports.R | 60 seqtrie-0.4.0/seqtrie/R/StarS7.R |only seqtrie-0.4.0/seqtrie/R/StarTreeR6.R |only seqtrie-0.4.0/seqtrie/R/covid_cdr3_data.R |only seqtrie-0.4.0/seqtrie/R/covid_receptors_data.R |only seqtrie-0.4.0/seqtrie/R/pairwise.R | 6 seqtrie-0.4.0/seqtrie/R/utils.R | 39 seqtrie-0.4.0/seqtrie/R/zzz.R | 9 seqtrie-0.4.0/seqtrie/README.md | 668 ++-- seqtrie-0.4.0/seqtrie/build/partial.rdb |only seqtrie-0.4.0/seqtrie/data/covid_cdr3.RData |binary seqtrie-0.4.0/seqtrie/data/covid_receptors.RData |only seqtrie-0.4.0/seqtrie/inst/doc/vignette.R | 175 - seqtrie-0.4.0/seqtrie/inst/doc/vignette.html | 632 ++- seqtrie-0.4.0/seqtrie/inst/doc/vignette.rmd | 429 +- seqtrie-0.4.0/seqtrie/inst/include/seqtrie/node_pool.h |only seqtrie-0.4.0/seqtrie/inst/include/seqtrie/pairwise.h | 107 seqtrie-0.4.0/seqtrie/inst/include/seqtrie/radix_child_map.h |only seqtrie-0.4.0/seqtrie/inst/include/seqtrie/radix_forest.h |only seqtrie-0.4.0/seqtrie/inst/include/seqtrie/radix_tree.h |only seqtrie-0.4.0/seqtrie/inst/include/seqtrie/radixmap.h | 1605 ++++++---- seqtrie-0.4.0/seqtrie/inst/include/seqtrie/seqtrie.h |only seqtrie-0.4.0/seqtrie/inst/include/seqtrie/utility.h | 128 seqtrie-0.4.0/seqtrie/inst/include/simple_array/nullable_array.h | 82 seqtrie-0.4.0/seqtrie/inst/include/simple_array/simple_array.h | 83 seqtrie-0.4.0/seqtrie/inst/include/simple_array/small_array.h | 68 seqtrie-0.4.0/seqtrie/inst/include/simple_array/small_nullable_array.h | 86 seqtrie-0.4.0/seqtrie/inst/include/simple_array_tests.cpp | 343 +- seqtrie-0.4.0/seqtrie/inst/include/simple_progress/simple_progress.h | 2 seqtrie-0.4.0/seqtrie/inst/include/startree |only seqtrie-0.4.0/seqtrie/inst/licenses |only seqtrie-0.4.0/seqtrie/man/RadixForest.Rd | 256 + seqtrie-0.4.0/seqtrie/man/RadixTree.Rd | 255 + seqtrie-0.4.0/seqtrie/man/StarTree.Rd |only seqtrie-0.4.0/seqtrie/man/align_search.Rd |only seqtrie-0.4.0/seqtrie/man/covid_cdr3.Rd | 6 seqtrie-0.4.0/seqtrie/man/covid_receptors.Rd |only seqtrie-0.4.0/seqtrie/man/dist_matrix.Rd | 10 seqtrie-0.4.0/seqtrie/man/dist_pairwise.Rd | 8 seqtrie-0.4.0/seqtrie/man/dist_search.Rd | 30 seqtrie-0.4.0/seqtrie/man/erase.Rd |only seqtrie-0.4.0/seqtrie/man/has_sequence.Rd |only seqtrie-0.4.0/seqtrie/man/insert.Rd |only seqtrie-0.4.0/seqtrie/man/is_valid.Rd |only seqtrie-0.4.0/seqtrie/man/plot_tree.Rd |only seqtrie-0.4.0/seqtrie/man/prefix_search.Rd |only seqtrie-0.4.0/seqtrie/man/radix_forest.Rd |only seqtrie-0.4.0/seqtrie/man/radix_tree.Rd |only seqtrie-0.4.0/seqtrie/man/result.Rd |only seqtrie-0.4.0/seqtrie/man/single_gap_search.Rd |only seqtrie-0.4.0/seqtrie/man/size.Rd |only seqtrie-0.4.0/seqtrie/man/split_search.Rd | 33 seqtrie-0.4.0/seqtrie/man/star_tree.Rd |only seqtrie-0.4.0/seqtrie/man/to_string.Rd |only seqtrie-0.4.0/seqtrie/man/to_vector.Rd |only seqtrie-0.4.0/seqtrie/src/CharCounter.cpp | 54 seqtrie-0.4.0/seqtrie/src/Makevars | 2 seqtrie-0.4.0/seqtrie/src/Makevars.win | 2 seqtrie-0.4.0/seqtrie/src/RadixForest.cpp | 217 - seqtrie-0.4.0/seqtrie/src/RadixTree.cpp | 153 seqtrie-0.4.0/seqtrie/src/RcppExports.cpp | 206 + seqtrie-0.4.0/seqtrie/src/StarTree.cpp |only seqtrie-0.4.0/seqtrie/src/pairwise.cpp | 27 seqtrie-0.4.0/seqtrie/src/seqtrie_types.h | 270 + seqtrie-0.4.0/seqtrie/src/split_search.cpp |only seqtrie-0.4.0/seqtrie/tests/test_RadixForest.R | 484 ++- seqtrie-0.4.0/seqtrie/tests/test_RadixTree.R | 837 +++-- seqtrie-0.4.0/seqtrie/tests/test_StarTree.R |only seqtrie-0.4.0/seqtrie/tests/test_pairwise.R | 140 seqtrie-0.4.0/seqtrie/tests/test_utilities.R |only seqtrie-0.4.0/seqtrie/vignettes/vignette.rmd | 429 +- seqtrie-0.4.0/seqtrie/vignettes/vignette_benchmark.png |only 85 files changed, 5446 insertions(+), 2974 deletions(-)
Title: Synthetic Control Methods
Description: Implementation of prediction and inference procedures for Synthetic Control methods using least square, lasso, ridge, or simplex-type constraints. Uncertainty is quantified with prediction intervals as developed in Cattaneo, Feng, and Titiunik (2021) <doi:10.1080/01621459.2021.1979561> for a single treated unit and in Cattaneo, Feng, Palomba, and Titiunik (2027) <doi:10.1162/rest_a_01588> for multiple treated units and staggered adoption. More details about the software implementation can be found in Cattaneo, Feng, Palomba, and Titiunik (2025) <doi:10.18637/jss.v113.i01>.
Author: Matias D. Cattaneo [aut, cre],
Yingjie Feng [aut],
Filippo Palomba [aut],
Rocio Titiunik [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between scpi versions 3.0.2 dated 2026-03-06 and 4.0.0 dated 2026-06-03
DESCRIPTION | 35 ++-- MD5 | 74 ++++---- R/scdata.R | 10 - R/scdataMulti.R | 220 ++++++++++++++++++------- R/scdataMulti_methods.R | 16 - R/scdata_methods.R | 16 - R/scest.R | 17 + R/scest_methods.R | 24 +- R/scpi-package.R | 10 - R/scpi.R | 144 ++++++++++++---- R/scpi_methods.R | 26 +-- R/scplot.R | 10 - R/scplotMulti.R | 10 - R/supporting_functions.R | 390 +++++++++++++++++++++++++++++++++------------ build/partial.rdb |binary inst/CITATION | 10 - inst/REFERENCES.bib | 12 - man/coef.scest.Rd | 8 man/coef.scpi.Rd | 8 man/print.scdata.Rd | 8 man/print.scdataMulti.Rd | 8 man/print.scest.Rd | 8 man/print.scpi.Rd | 8 man/scdata.Rd | 10 - man/scdataMulti.Rd | 27 +-- man/scest.Rd | 10 - man/scpi-package.Rd | 10 - man/scpi.Rd | 16 + man/scplot.Rd | 10 - man/scplotMulti.Rd | 10 - man/summary.scdata.Rd | 8 man/summary.scdataMulti.Rd | 8 man/summary.scest.Rd | 8 man/summary.scpi.Rd | 8 tests |only 35 files changed, 783 insertions(+), 414 deletions(-)
Title: Selection and Misclassification Bias Adjustment for Logistic
Regression Models
Description: Health research using data from electronic health records (EHR) has gained
popularity, but misclassification of EHR-derived disease status and lack of
representativeness of the study sample can result in substantial bias in
effect estimates and can impact power and type I error for association
tests. Here, the assumed target of inference is the relationship between
binary disease status and predictors modeled using a logistic regression
model. 'SAMBA' implements several methods for obtaining bias-corrected
point estimates along with valid standard errors as proposed in Beesley and
Mukherjee (2020) <doi:10.1111/biom.13400>, Biometrics.
Author: Lauren Beesley [cre],
Alexander Rix [aut]
Maintainer: Lauren Beesley <lbeesley@umich.edu>
Diff between SAMBA versions 0.9.0 dated 2020-02-20 and 1.0.0 dated 2026-06-03
DESCRIPTION | 20 - MD5 | 37 +- R/approxdist.R | 2 R/nonlogistic.R | 2 R/obsloglik.R | 2 R/obsloglikEM.R | 2 R/sensitivity.R | 2 README.md | 15 - build/partial.rdb |only build/vignette.rds |binary inst/doc/UsingSAMBA.R | 20 - inst/doc/UsingSAMBA.Rmd | 4 inst/doc/UsingSAMBA.html | 652 +++++++++++++++++++++++++++++++++++------------ man/approxdist.Rd | 2 man/nonlogistic.Rd | 2 man/obsloglik.Rd | 14 - man/obsloglikEM.Rd | 15 - man/samba.df.Rd | 6 man/sensitivity.Rd | 2 vignettes/UsingSAMBA.Rmd | 4 20 files changed, 573 insertions(+), 230 deletions(-)
Title: Additional Operators to Help You Write Cleaner R Code
Description: A set of additional operators and helper functions to make R code
easier to read, write, and maintain. Includes string arithmetic (such as
'foo' + 'bar'), in-place reassignment operators (such as x += 1), logical
operators that handle missing values, floating-point and strict
('JavaScript'-style) equality tests, 'between' operators, and 'SQL'-style
pattern matching. Also provides convenience helpers for type conversion,
operating-system checks, complete-cases statistics, and string manipulation,
such as Oxford-comma pasting and extracting the first, last, n-th, or most
common element of a vector or word in a string. The goal is to give R users,
particularly those coming from other languages such as 'Python', a friendlier
and more consistent syntax.
Author: Ben Wiseman [cre, aut, ccp],
Steven Nydick [aut, ccp] ,
Jeff Jones [aut, led]
Maintainer: Ben Wiseman <benjamin.h.wiseman@gmail.com>
Diff between roperators versions 1.3.14 dated 2023-07-20 and 1.4.0 dated 2026-06-03
roperators-1.3.14/roperators/vignettes/nicer_roperators.md |only roperators-1.4.0/roperators/DESCRIPTION | 62 roperators-1.4.0/roperators/MD5 | 91 roperators-1.4.0/roperators/NAMESPACE | 9 roperators-1.4.0/roperators/NEWS.md | 59 roperators-1.4.0/roperators/R/complete_cases.R | 12 roperators-1.4.0/roperators/R/content_checks.R | 15 roperators-1.4.0/roperators/R/file_checks.R | 2 roperators-1.4.0/roperators/R/operators.R | 463 +-- roperators-1.4.0/roperators/R/os_checks.R | 67 roperators-1.4.0/roperators/R/paste_functions.R | 45 roperators-1.4.0/roperators/R/shorthand.R | 265 +- roperators-1.4.0/roperators/R/sugar.R |only roperators-1.4.0/roperators/R/type_checks.R | 43 roperators-1.4.0/roperators/README.md | 757 +----- roperators-1.4.0/roperators/build/vignette.rds |binary roperators-1.4.0/roperators/inst/doc/nicer_roperators.R | 338 +- roperators-1.4.0/roperators/inst/doc/nicer_roperators.Rmd | 596 +--- roperators-1.4.0/roperators/inst/doc/nicer_roperators.html | 1217 ++++------ roperators-1.4.0/roperators/man/arithmetic_sugar.Rd |only roperators-1.4.0/roperators/man/as.percent.Rd |only roperators-1.4.0/roperators/man/assign_by_regex.Rd | 33 roperators-1.4.0/roperators/man/assign_ops.Rd | 47 roperators-1.4.0/roperators/man/choose_permute.Rd | 21 roperators-1.4.0/roperators/man/cleaner_conversions.Rd | 40 roperators-1.4.0/roperators/man/comparisons.Rd | 84 roperators-1.4.0/roperators/man/complete_cases.Rd | 15 roperators-1.4.0/roperators/man/content_checks.Rd | 15 roperators-1.4.0/roperators/man/f.Rd |only roperators-1.4.0/roperators/man/factor_conversion.Rd | 26 roperators-1.4.0/roperators/man/file_checks.Rd | 2 roperators-1.4.0/roperators/man/floating_point_comparisons.Rd | 29 roperators-1.4.0/roperators/man/fuzzy_match.Rd |only roperators-1.4.0/roperators/man/inline_fallback.Rd |only roperators-1.4.0/roperators/man/integrate.Rd | 23 roperators-1.4.0/roperators/man/library.force.Rd | 16 roperators-1.4.0/roperators/man/logicals.Rd | 85 roperators-1.4.0/roperators/man/n_unique.Rd |only roperators-1.4.0/roperators/man/os.Rd | 31 roperators-1.4.0/roperators/man/overwrite_by_regex.Rd | 32 roperators-1.4.0/roperators/man/overwrite_missing.Rd | 38 roperators-1.4.0/roperators/man/paste_and_cat.Rd | 44 roperators-1.4.0/roperators/man/pattern_matching.Rd |only roperators-1.4.0/roperators/man/read.tsv.Rd | 15 roperators-1.4.0/roperators/man/seq_around.Rd |only roperators-1.4.0/roperators/man/string_arithmetic.Rd | 24 roperators-1.4.0/roperators/man/time_savers.Rd | 96 roperators-1.4.0/roperators/man/type_checks.Rd | 29 roperators-1.4.0/roperators/tests |only roperators-1.4.0/roperators/vignettes/nicer_roperators.Rmd | 596 +--- 50 files changed, 2301 insertions(+), 3081 deletions(-)
Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <https://curl.se/libcurl/>
Provides functions to allow one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Author: CRAN Team [ctb] ,
Duncan Temple Lang [aut] ,
Ivan Krylov [cre]
Maintainer: Ivan Krylov <ikrylov@disroot.org>
Diff between RCurl versions 1.98-1.18 dated 2026-03-21 and 1.98-1.19 dated 2026-06-03
DESCRIPTION | 24 ++++---- LICENSE | 4 - MD5 | 40 ++++++------- R/urlExists.R | 4 - inst/doc/FAQ.html | 4 + man/MultiCURLHandle-class.Rd | 4 - man/basicHeaderGatherer.Rd | 6 +- man/basicTextGatherer.Rd | 32 ++++++---- man/binaryBuffer.Rd | 6 +- man/chunkToLineReader.Rd | 10 +-- man/curlPerform.Rd | 14 ++-- man/curlSetOpt.Rd | 6 +- man/dynCurlReader.Rd | 12 ++-- man/getBinaryURL.Rd | 6 +- man/getCurlHandle.Rd | 6 +- man/getCurlInfo.Rd | 6 +- man/getFormParams.Rd | 5 - man/getURIAsynchronous.Rd | 14 ++-- man/getURL.Rd | 128 ++++++++++++++++++++++--------------------- man/url.exists.Rd | 12 ++-- src/curl.c | 4 + 21 files changed, 183 insertions(+), 164 deletions(-)
Title: Efficient Serialization of R Objects
Description: Streamlines and accelerates the process of saving and loading R objects, improving speed and compression compared to other methods. The package provides two compression formats: the 'qs2' format, which uses R serialization via the C API while optimizing compression and disk I/O, and the 'qdata' format, featuring custom serialization for slightly faster performance and better compression. Additionally, the 'qs2' format can be directly converted to the standard 'RDS' format, ensuring long-term compatibility with future versions of R.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] ,
Facebook, Inc. [cph] ,
Reichardt Tino [ctb, cph] ,
Skibinski Przemyslaw [ctb, cph] ,
Mori Yuta [ctb, cph] ,
Francesc Alted [ctb, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs2 versions 0.2.1 dated 2026-05-04 and 0.2.2 dated 2026-06-03
ChangeLog | 4 + DESCRIPTION | 8 +-- MD5 | 18 +++---- configure | 63 +++++++------------------- configure.ac | 45 ++++-------------- inst/include/qdata-cpp/include/io/io_common.h | 36 +++++++------- src/Makevars.in | 15 +++--- src/Makevars.win | 6 +- src/qd_serializer.h | 19 ++++++- tests/zz_correctness_testing.R | 39 ++++++++++++++++ 10 files changed, 130 insertions(+), 123 deletions(-)
Title: Penalized Fast Causal Inference for High-Dimensional Structure
Learning
Description: Implements Penalized Fast Causal Inference (PFCI), a two-stage
causal structure learning procedure for high-dimensional settings with
potential latent variables and selection bias. In the first stage,
neighborhood selection via the Lasso constructs a sparse undirected
skeleton. In the second stage, the Fast Causal Inference (FCI) algorithm
orients edges on this reduced graph, producing a Partial Ancestral Graph
(PAG) that accounts for latent confounders. The method is consistent
under sparsity assumptions and substantially faster than standard FCI
and RFCI in high dimensions. See Pal, Ghosh, and Yang (2025)
<doi:10.48550/arXiv.2507.00173> for the underlying theory.
Author: Samhita Pal [aut] ,
Dhrubajyoti Ghosh [aut, cre] ,
Shu Yang [aut]
Maintainer: Dhrubajyoti Ghosh <dghosh3@kennesaw.edu>
Diff between PFCI versions 0.1.0 dated 2026-06-02 and 0.1.1 dated 2026-06-03
DESCRIPTION | 6 - MD5 | 30 +++--- NEWS.md | 7 + R/pfci_fit.R | 4 R/plot_pag.R | 8 - R/simulate_pfci_latent.R | 4 R/simulate_pfci_toy.R | 8 - README.md | 75 +++++----------- inst/doc/PFCIdemo.R | 7 - inst/doc/PFCIdemo.Rmd | 8 - inst/doc/PFCIdemo.html | 39 +++----- inst/scripts/BCN_fifth_code.R | 156 +++++++++++++++++------------------ inst/scripts/PFCI_with_package_fun.R | 26 ++--- inst/scripts/latent_simu_withGFCI.R | 74 ++++++++-------- inst/scripts/run_simulations_full.R | 7 - vignettes/PFCIdemo.Rmd | 8 - 16 files changed, 202 insertions(+), 265 deletions(-)
Title: A Library for using 'Pathling'
Description: R API for 'Pathling', a tool for querying and transforming electronic health record data that is represented using the 'Fast Healthcare Interoperability Resources' (FHIR) standard - see <https://pathling.csiro.au/docs>.
Author: Australian e-Health Research Centre, CSIRO [cph, cre],
Piotr Szul [aut],
John Grimes [aut]
Maintainer: "Australian e-Health Research Centre, CSIRO" <pathling@csiro.au>
Diff between pathling versions 9.7.0 dated 2026-05-30 and 9.7.1 dated 2026-06-03
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/context.R | 2 +- R/data.R | 2 +- R/datasource.R | 2 +- R/dependencies.R | 2 +- R/encoding.R | 2 +- R/etc.R | 2 +- R/fhir.R | 2 +- R/functions.R | 2 +- R/udfs.R | 2 +- R/view.R | 2 +- 12 files changed, 25 insertions(+), 25 deletions(-)
Title: Create and Evaluate NONMEM Models in a Project Context
Description: Systematically creates and modifies NONMEM(R) control streams. Harvests
NONMEM output, builds run logs, creates derivative data, generates diagnostics.
NONMEM (ICON Development Solutions <https://www.iconplc.com/>) is software for
nonlinear mixed effects modeling. See 'package?nonmemica'.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between nonmemica versions 1.0.11 dated 2024-10-25 and 1.2.0 dated 2026-06-03
DESCRIPTION | 8 - MD5 | 96 ++++++++++---------- NAMESPACE | 5 + R/definitions.R | 2 R/getset.R | 18 ++- R/init.R | 27 +++++ R/likebut.R | 21 ++-- R/model.R | 6 - R/nonmemica.R | 2 R/partab.R | 182 ++++++++++++++++++++++----------------- R/runrecord.R | 10 +- R/superset.R | 2 R/xpath.R | 98 ++++++++++++++++++--- build/vignette.rds |binary inst/doc/parameter-table.R | 32 +++--- inst/doc/parameter-table.html | 112 +++++++++++++----------- man/as.best.default.Rd | 72 +++++++-------- man/as.bootstrap.bootstrap.Rd | 50 +++++----- man/as.init.init.Rd | 58 ++++++------ man/as.inits.list.Rd | 54 +++++------ man/as.model.character.Rd | 101 +++++++++++---------- man/as.problem.Rd | 4 man/as.xml_document.Rd | 4 man/as.xml_document.character.Rd | 62 ++++++------- man/as.xml_document.numeric.Rd | 2 man/as_nms_canonical.Rd | 84 +++++++++--------- man/as_nms_nonmem.Rd | 84 +++++++++--------- man/as_nms_pmx.Rd | 84 +++++++++--------- man/as_nms_psn.Rd | 84 +++++++++--------- man/comments.inits.Rd | 60 ++++++------ man/comments.items.Rd | 52 +++++------ man/comments.model.Rd | 92 +++++++++---------- man/definitions.definitions.Rd | 50 +++++----- man/filter_estimation.Rd |only man/fixed.Rd | 2 man/fixed.init.Rd | 58 ++++++------ man/ignored.Rd | 112 ++++++++++++------------ man/nms_canonical.nms_nonmem.Rd | 90 +++++++++---------- man/nms_canonical.nms_pmx.Rd | 134 ++++++++++++++-------------- man/nms_nonmem.nms_canonical.Rd | 98 ++++++++++----------- man/nms_nonmem.nms_pmx.Rd | 128 +++++++++++++-------------- man/nms_pmx.Rd | 88 +++++++++--------- man/nms_pmx.nms_canonical.Rd | 120 ++++++++++++------------- man/nms_pmx.nms_nonmem.Rd | 128 +++++++++++++-------------- man/nonmemica.Rd | 2 man/readxml.Rd |only man/rosetta.Rd | 92 +++++++++---------- man/xpath.Rd | 2 man/xpath.default.Rd | 58 ++++++------ man/xpath.xml_document.Rd | 68 +++++++------- 50 files changed, 1487 insertions(+), 1311 deletions(-)
Title: Interface to the 'Nominatim' API
Description: Lightweight interface to the 'OpenStreetMap' 'Nominatim' API
<https://nominatim.org/release-docs/latest/>. Extract coordinates from
addresses, retrieve addresses from coordinates, look up amenities and
addresses, and return results as 'tibble' or 'sf' objects.
Author: Diego Hernangomez [aut, cre, cph] ,
Jindra Lacko [ctb, rev] ,
Alex White [ctb],
OpenStreetMap [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between nominatimlite versions 0.5.0 dated 2026-03-18 and 0.6.0 dated 2026-06-03
nominatimlite-0.5.0/nominatimlite/man/chunks |only nominatimlite-0.5.0/nominatimlite/tests/testthat/test-check_access.R |only nominatimlite-0.6.0/nominatimlite/DESCRIPTION | 31 nominatimlite-0.6.0/nominatimlite/LICENSE | 4 nominatimlite-0.6.0/nominatimlite/MD5 | 156 - nominatimlite-0.6.0/nominatimlite/NEWS.md | 152 - nominatimlite-0.6.0/nominatimlite/R/bbox_to_poly.R | 33 nominatimlite-0.6.0/nominatimlite/R/data.R | 66 nominatimlite-0.6.0/nominatimlite/R/geo_address_lookup.R | 246 +- nominatimlite-0.6.0/nominatimlite/R/geo_address_lookup_sf.R | 288 +-- nominatimlite-0.6.0/nominatimlite/R/geo_amenity.R | 76 nominatimlite-0.6.0/nominatimlite/R/geo_amenity_sf.R | 63 nominatimlite-0.6.0/nominatimlite/R/geo_lite.R | 363 +--- nominatimlite-0.6.0/nominatimlite/R/geo_lite_sf.R | 435 ++--- nominatimlite-0.6.0/nominatimlite/R/geo_lite_struct.R | 316 +-- nominatimlite-0.6.0/nominatimlite/R/geo_lite_struct_sf.R | 130 - nominatimlite-0.6.0/nominatimlite/R/nominatim_check_access.R | 271 +-- nominatimlite-0.6.0/nominatimlite/R/nominatimlite-package.R | 24 nominatimlite-0.6.0/nominatimlite/R/reverse_geo_lite.R | 406 ++-- nominatimlite-0.6.0/nominatimlite/R/reverse_geo_lite_sf.R | 189 -- nominatimlite-0.6.0/nominatimlite/R/utils.R | 829 ++++++---- nominatimlite-0.6.0/nominatimlite/README.md | 127 - nominatimlite-0.6.0/nominatimlite/build/vignette.rds |binary nominatimlite-0.6.0/nominatimlite/data/osm_amenities.rda |binary nominatimlite-0.6.0/nominatimlite/inst/CITATION | 42 nominatimlite-0.6.0/nominatimlite/inst/REFERENCES.bib | 68 nominatimlite-0.6.0/nominatimlite/inst/WORDLIST | 94 - nominatimlite-0.6.0/nominatimlite/inst/doc/nominatimlite.html | 64 nominatimlite-0.6.0/nominatimlite/inst/doc/nominatimlite.qmd | 104 - nominatimlite-0.6.0/nominatimlite/inst/schemaorg.json | 10 nominatimlite-0.6.0/nominatimlite/man/bbox_to_poly.Rd | 144 - nominatimlite-0.6.0/nominatimlite/man/figures/README-line-object-1.png |binary nominatimlite-0.6.0/nominatimlite/man/figures/README-pizzahut-1.png |binary nominatimlite-0.6.0/nominatimlite/man/figures/lifecycle-archived.svg | 42 nominatimlite-0.6.0/nominatimlite/man/figures/lifecycle-defunct.svg | 42 nominatimlite-0.6.0/nominatimlite/man/figures/lifecycle-deprecated.svg | 42 nominatimlite-0.6.0/nominatimlite/man/figures/lifecycle-experimental.svg | 42 nominatimlite-0.6.0/nominatimlite/man/figures/lifecycle-maturing.svg | 42 nominatimlite-0.6.0/nominatimlite/man/figures/lifecycle-questioning.svg | 42 nominatimlite-0.6.0/nominatimlite/man/figures/lifecycle-soft-deprecated.svg | 42 nominatimlite-0.6.0/nominatimlite/man/figures/lifecycle-stable.svg | 58 nominatimlite-0.6.0/nominatimlite/man/figures/lifecycle-superseded.svg | 42 nominatimlite-0.6.0/nominatimlite/man/geo_address_lookup.Rd | 173 +- nominatimlite-0.6.0/nominatimlite/man/geo_address_lookup_sf.Rd | 263 +-- nominatimlite-0.6.0/nominatimlite/man/geo_amenity.Rd | 252 +-- nominatimlite-0.6.0/nominatimlite/man/geo_amenity_sf.Rd | 286 +-- nominatimlite-0.6.0/nominatimlite/man/geo_lite.Rd | 185 +- nominatimlite-0.6.0/nominatimlite/man/geo_lite_sf.Rd | 272 +-- nominatimlite-0.6.0/nominatimlite/man/geo_lite_struct.Rd | 215 +- nominatimlite-0.6.0/nominatimlite/man/geo_lite_struct_sf.Rd | 289 +-- nominatimlite-0.6.0/nominatimlite/man/nominatim_check_access.Rd | 63 nominatimlite-0.6.0/nominatimlite/man/nominatimlite-package.Rd | 71 nominatimlite-0.6.0/nominatimlite/man/osm_amenities.Rd | 78 nominatimlite-0.6.0/nominatimlite/man/reverse_geo_lite.Rd | 205 +- nominatimlite-0.6.0/nominatimlite/man/reverse_geo_lite_sf.Rd | 307 +-- nominatimlite-0.6.0/nominatimlite/man/roxygen/meta.R | 19 nominatimlite-0.6.0/nominatimlite/tests/testthat.R | 24 nominatimlite-0.6.0/nominatimlite/tests/testthat/_snaps/geo_lite.md | 14 nominatimlite-0.6.0/nominatimlite/tests/testthat/_snaps/geo_lite_sf.md | 14 nominatimlite-0.6.0/nominatimlite/tests/testthat/_snaps/geo_lite_struct.md | 14 nominatimlite-0.6.0/nominatimlite/tests/testthat/_snaps/geo_lite_struct_sf.md | 14 nominatimlite-0.6.0/nominatimlite/tests/testthat/_snaps/nominatim_check_access.md | 14 nominatimlite-0.6.0/nominatimlite/tests/testthat/_snaps/reverse_geo_lite.md | 16 nominatimlite-0.6.0/nominatimlite/tests/testthat/_snaps/reverse_geo_lite_sf.md | 16 nominatimlite-0.6.0/nominatimlite/tests/testthat/helpers.R |only nominatimlite-0.6.0/nominatimlite/tests/testthat/test-bbox_to_poly.R | 79 nominatimlite-0.6.0/nominatimlite/tests/testthat/test-geo_address_lookup.R | 373 ++-- nominatimlite-0.6.0/nominatimlite/tests/testthat/test-geo_address_lookup_sf.R | 338 ++-- nominatimlite-0.6.0/nominatimlite/tests/testthat/test-geo_amenity.R | 256 +-- nominatimlite-0.6.0/nominatimlite/tests/testthat/test-geo_amenity_sf.R | 244 +- nominatimlite-0.6.0/nominatimlite/tests/testthat/test-geo_lite.R | 323 +-- nominatimlite-0.6.0/nominatimlite/tests/testthat/test-geo_lite_sf.R | 350 ++-- nominatimlite-0.6.0/nominatimlite/tests/testthat/test-geo_lite_struct.R | 298 +-- nominatimlite-0.6.0/nominatimlite/tests/testthat/test-geo_lite_struct_sf.R | 280 +-- nominatimlite-0.6.0/nominatimlite/tests/testthat/test-nominatim_check_access.R | 103 - nominatimlite-0.6.0/nominatimlite/tests/testthat/test-reverse_geo_lite.R | 497 ++--- nominatimlite-0.6.0/nominatimlite/tests/testthat/test-reverse_geo_lite_sf.R | 546 +++--- nominatimlite-0.6.0/nominatimlite/tests/testthat/test-utils.R | 35 nominatimlite-0.6.0/nominatimlite/vignettes/REFERENCES.bib | 68 nominatimlite-0.6.0/nominatimlite/vignettes/nominatimlite.qmd | 104 - 80 files changed, 5803 insertions(+), 6020 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD, Estimation
Routines
Description: Fit and compare nonlinear mixed-effects models in
differential equations with flexible dosing information commonly seen
in pharmacokinetics and pharmacodynamics (Almquist, Leander, and
Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation
solving is by compiled C code provided in the 'rxode2' package (Wang,
Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut, cre] ,
Wenping Wang [aut],
Audrey Lavenu [ctb],
Ben Goodrich [ctb],
David Ardia [cph],
Dirk Eddelbuettel [cph],
Elizabeth Eskow [ctb],
Emmanuelle Comets [ctb],
Hadley Wickham [ctb],
Hajar Besbassi [ctb],
Johannes Pfeifer [ctb],
J [...truncated...]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2est versions 6.0.0 dated 2026-05-31 and 6.0.1 dated 2026-06-03
nlmixr2est-6.0.0/nlmixr2est/R/rxEtCompat.R |only nlmixr2est-6.0.1/nlmixr2est/DESCRIPTION | 8 +- nlmixr2est-6.0.1/nlmixr2est/MD5 | 35 ++++------ nlmixr2est-6.0.1/nlmixr2est/NEWS.md | 10 ++ nlmixr2est-6.0.1/nlmixr2est/R/aaaCranNlmixrThreads.R | 5 - nlmixr2est-6.0.1/nlmixr2est/R/nlmixr2_md5.R | 2 nlmixr2est-6.0.1/nlmixr2est/src/Makevars.in | 2 nlmixr2est-6.0.1/nlmixr2est/src/inner.cpp | 24 ++++-- nlmixr2est-6.0.1/nlmixr2est/tests/testthat.R | 8 +- nlmixr2est-6.0.1/nlmixr2est/tests/testthat/fixtures/fit-one-compartment-fo.rds |binary nlmixr2est-6.0.1/nlmixr2est/tests/testthat/fixtures/fit-one-compartment-foce.rds |binary nlmixr2est-6.0.1/nlmixr2est/tests/testthat/fixtures/fit-one-compartment-focei-fast.rds |binary nlmixr2est-6.0.1/nlmixr2est/tests/testthat/fixtures/fit-one-compartment-focei.rds |binary nlmixr2est-6.0.1/nlmixr2est/tests/testthat/fixtures/fit-one-compartment-foi.rds |binary nlmixr2est-6.0.1/nlmixr2est/tests/testthat/fixtures/fit-one-compartment-lag-focei.rds |binary nlmixr2est-6.0.1/nlmixr2est/tests/testthat/fixtures/fit-one-compartment-lag-saem.rds |binary nlmixr2est-6.0.1/nlmixr2est/tests/testthat/fixtures/fit-one-compartment-posthoc.rds |binary nlmixr2est-6.0.1/nlmixr2est/tests/testthat/fixtures/fit-one-compartment-saem-cwres.rds |binary nlmixr2est-6.0.1/nlmixr2est/tests/testthat/fixtures/fit-one-compartment-saem.rds |binary 19 files changed, 58 insertions(+), 36 deletions(-)
Title: Solving Linear Inverse Models
Description: Functions that (1) find the minimum/maximum of a linear or quadratic function:
min or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(a_i*x_i)
subject to equality constraints Ex=f and/or inequality constraints Gx>=h,
(2) sample an underdetermined- or overdetermined system Ex=f subject to Gx>=h, and if applicable Ax~=b,
(3) solve a linear system Ax=B for the unknown x. It includes banded and tridiagonal linear systems.
Author: Karline Soetaert [aut, cre],
Karel Van den Meersche [aut],
Dick van Oevelen [aut],
Charles L. Lawson [ctb] ,
Richard J. Hanson [ctb] ,
Jack Dongarra [ctb] ,
Cleve Moler [ctb]
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between limSolve versions 2.0.1 dated 2025-06-24 and 2.0.2 dated 2026-06-03
DESCRIPTION | 6 ++-- MD5 | 8 ++--- build/vignette.rds |binary inst/doc/limSolve.html | 70 ++++++++++++++++++++++++------------------------- src/solve.f | 12 ++++---- 5 files changed, 49 insertions(+), 47 deletions(-)
Title: Grammar of Graphics for SQL
Description: Allows you to write queries that combine SQL (Structured Query
Language) data retrieval with visualization specifications in a single,
composable syntax. The 'ggsql' package binds directly with the 'ggsql' 'Rust'
library and allows you to set up readers and writers and execute queries
against it. The package also offers 'knitr' and 'shiny' integration allowing
the user to use 'ggsql' in both frameworks.
Author: Thomas Lin Pedersen [aut, cre] ,
George Stagg [aut] ,
Teun van den Brand [aut] ,
Posit, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ggsql versions 0.3.2 dated 2026-05-27 and 0.3.3 dated 2026-06-03
DESCRIPTION | 12 - MD5 | 15 - NEWS.md | 7 inst/doc/engine.html | 24 +- inst/doc/ggsql.html | 8 src/rust/Cargo.lock | 425 ++++++++++++++++++++---------------------- src/rust/Cargo.toml | 6 src/rust/vendor.tar.xz.sha256 |only tools/config.R | 29 ++ 9 files changed, 266 insertions(+), 260 deletions(-)
Title: Dependent Mixture Models - Hidden Markov Models of GLMs and
Other Distributions in S4
Description: Fits latent (hidden) Markov models on mixed categorical and continuous (time series) data, otherwise known as dependent mixture models, see Visser & Speekenbrink (2010, <DOI:10.18637/jss.v036.i07>).
Author: Ingmar Visser [aut, cre],
Maarten Speekenbrink [aut]
Maintainer: Ingmar Visser <i.visser@uva.nl>
Diff between depmixS4 versions 1.5-1 dated 2025-05-11 and 1.5-2 dated 2026-06-03
DESCRIPTION | 13 ++++++------- MD5 | 23 ++++++++++++----------- NEWS | 2 +- README | 2 +- build/vignette.rds |binary inst/doc/depmixS4.R | 2 -- inst/doc/depmixS4.Rnw | 5 ++--- inst/doc/depmixS4.pdf |binary man/depmix.Rd | 7 ------- man/depmix.fit.Rd | 6 ------ tests/test4examples.R |only vignettes/depmixS4.Rnw | 5 ++--- vignettes/depmixS4.bib | 44 ++++++++++++++++++++------------------------ 13 files changed, 44 insertions(+), 65 deletions(-)
Title: Create Data Frames for Exchange and Reuse
Description: The 'dataset' package extends tidy data frames with
machine-readable metadata, semantic definitions, and provenance
information. It supports incremental semantic stabilization,
interoperable dataset exchange, and FAIR-oriented publication
workflows by preserving contextual metadata directly within R
objects. The package facilitates the creation, exchange, reuse,
and RDF serialization of datasets in line with ISO and W3C
standards.
Author: Daniel Antal [aut, cre] ,
Marcelo Perlin [rev] ,
Anna Marta Mester [rev] ,
Mauro Lepore [rev]
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
Diff between dataset versions 0.4.4 dated 2026-05-18 and 0.4.5 dated 2026-06-03
DESCRIPTION | 25 - MD5 | 227 ++++++++------- NAMESPACE | 8 NEWS.md | 15 - R/as.Date.R | 20 - R/as.POSIXct.R | 22 - R/as.data.frame.R | 14 R/as_character.R | 10 R/as_datacite.R | 2 R/as_factor.R | 14 R/as_logical.R | 24 - R/as_numeric.R | 4 R/as_value_key.R |only R/bibrecord.R | 2 R/bind_defined_rows.R | 18 - R/contributor.R | 14 R/datacite.R | 6 R/datacite_to_triples.R | 2 R/dataset-orange_df.R | 2 R/dataset_df.R | 10 R/dataset_format.R | 6 R/dataset_title.R | 10 R/defined.R | 39 +- R/description.R | 6 R/dublincore.R | 4 R/get_bibentry.R | 8 R/haven_labelled_defined.R | 20 - R/identifier.R | 2 R/language.R | 2 R/n_triple.R | 4 R/prelabel.R |only R/provenance.R | 16 - R/relation.R | 2 R/subject.R | 8 R/var_label.R | 2 R/var_labels.R | 4 R/var_unit.R | 4 README.md | 101 +++++- build/vignette.rds |binary inst/WORDLIST | 10 inst/doc/dataset_df.html | 2 inst/doc/defined.Rmd | 37 +- inst/doc/defined.html | 27 + inst/doc/design.R | 23 + inst/doc/design.Rmd | 307 ++++++++++++-------- inst/doc/design.html | 442 ++++++++++++++++-------------- inst/doc/introduction.R | 17 + inst/doc/introduction.Rmd | 94 ++++-- inst/doc/introduction.html | 359 ++++++++++++++---------- inst/doc/prelabelled.R |only inst/doc/prelabelled.Rmd |only inst/doc/prelabelled.html |only inst/doc/rdf.html | 12 man/as.Date.haven_labelled_defined.Rd | 4 man/as.POSIXct.haven_labelled_defined.Rd | 4 man/as.data.frame.dataset_df.Rd | 4 man/as_character.Rd | 130 ++++---- man/as_character.prelabelled.Rd |only man/as_factor.Rd | 2 man/as_logical.Rd | 2 man/as_numeric.Rd | 94 +++--- man/as_tibble.dataset_df.Rd | 3 man/as_value_key.Rd |only man/bibrecord.Rd | 142 ++++----- man/bind_defined_rows.Rd | 152 +++++----- man/c.haven_labelled_defined.Rd | 76 ++--- man/contributor.Rd | 10 man/creator.Rd | 124 ++++---- man/datacite.Rd | 352 +++++++++++------------ man/dataset_df.Rd | 274 +++++++++--------- man/dataset_format.Rd | 6 man/dataset_title.Rd | 123 ++++---- man/dataset_to_triples.Rd | 112 +++---- man/default_provenance.Rd | 4 man/defined.Rd | 217 +++++++------- man/describe.Rd | 82 ++--- man/description.Rd | 110 +++---- man/dublincore.Rd | 302 ++++++++++---------- man/fix_contributor.Rd | 42 +- man/gdp.Rd | 74 ++--- man/geolocation.Rd | 120 ++++---- man/get_bibentry.Rd | 148 +++++----- man/get_variable_concepts.Rd | 42 +- man/haven_labelled_defined.Rd | 12 man/id_to_column.Rd | 64 ++-- man/identifier.Rd | 128 ++++---- man/language.Rd | 212 +++++++------- man/n_triple.Rd | 72 ++-- man/n_triples.Rd | 80 ++--- man/orange_df.Rd | 208 +++++++------- man/prelabel.Rd |only man/print.haven_labelled_defined.Rd | 2 man/provenance.Rd | 90 +++--- man/publication_year.Rd | 108 +++---- man/publisher.Rd | 120 ++++---- man/rights.Rd | 118 ++++---- man/strip_defined.Rd | 62 ++-- man/subject.Rd | 224 +++++++-------- man/var_concept.Rd | 102 +++--- man/var_label.Rd | 234 +++++++-------- man/var_labels.Rd | 4 man/var_namespace.Rd | 172 +++++------ man/var_unit.Rd | 214 +++++++------- man/vec_cast_named.Rd | 24 - man/xsd_convert.Rd | 208 +++++++------- tests/testthat/test-as_value_key.R |only tests/testthat/test-datacite_to_triples.R | 2 tests/testthat/test-dataset_title.R | 4 tests/testthat/test-get_bibentry.R | 2 tests/testthat/test-id_to_column.R | 27 + tests/testthat/test-n_triple.R | 2 tests/testthat/test-prelabel.R |only tests/testthat/test-relation.R | 2 tests/testthat/test-subject.R | 1 tests/testthat/test-var_labels.R | 4 tests/testthat/test-var_unit.R | 4 vignettes/defined.Rmd | 37 +- vignettes/design.Rmd | 307 ++++++++++++-------- vignettes/introduction.Rmd | 94 ++++-- vignettes/prelabelled.Rmd |only 120 files changed, 4105 insertions(+), 3601 deletions(-)
Title: Supplements the 'gtsummary' Package for Pharmaceutical Reporting
Description: Tables summarizing clinical trial results are often complex
and require detailed tailoring prior to submission to a health
authority. The 'crane' package supplements the functionality of the
'gtsummary' package for creating these often highly bespoke tables in
the pharmaceutical industry.
Author: Daniel D. Sjoberg [aut] ,
Emily de la Rua [aut] ,
Davide Garolini [aut] ,
Chi Zhang [aut] ,
Abinaya Yogasekaram [ctb] ,
Joe Zhu [cre] ,
Jan Szczypinski [aut] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between crane versions 0.3.1 dated 2026-01-21 and 0.3.2 dated 2026-06-03
crane-0.3.1/crane/R/as_ggplot.R |only crane-0.3.1/crane/R/forest.R |only crane-0.3.1/crane/man/as_ggplot.Rd |only crane-0.3.1/crane/man/df2gg.Rd |only crane-0.3.1/crane/man/extract_plot_data.Rd |only crane-0.3.1/crane/man/g_forest.Rd |only crane-0.3.1/crane/man/gg_forest_plot.Rd |only crane-0.3.1/crane/tests/testthat/test-forestplot.R |only crane-0.3.2/crane/DESCRIPTION | 34 crane-0.3.2/crane/MD5 | 259 +- crane-0.3.2/crane/NAMESPACE | 28 crane-0.3.2/crane/NEWS.md | 271 +- crane-0.3.2/crane/R/add_blank_rows.R | 266 +- crane-0.3.2/crane/R/add_difference_row.R | 360 +- crane-0.3.2/crane/R/add_forest.R |only crane-0.3.2/crane/R/add_forest_utils.R |only crane-0.3.2/crane/R/add_hierarchical_count_row.R | 170 - crane-0.3.2/crane/R/adjust_stat_columns_wrap.R |only crane-0.3.2/crane/R/annotate_gg.R |only crane-0.3.2/crane/R/annotate_gg_km.R | 397 +-- crane-0.3.2/crane/R/annotate_gg_pkc.R |only crane-0.3.2/crane/R/ard_tabulate_abnormal_by_baseline.R |only crane-0.3.2/crane/R/crane-package.R | 6 crane-0.3.2/crane/R/deprecated.R | 77 crane-0.3.2/crane/R/df_add_poolings.R |only crane-0.3.2/crane/R/get_cox_pairwise_df.R | 392 ++- crane-0.3.2/crane/R/gg_km.R | 19 crane-0.3.2/crane/R/gg_km_utils.R | 120 crane-0.3.2/crane/R/gg_lineplot.R |only crane-0.3.2/crane/R/gg_mmrm_lineplot.R |only crane-0.3.2/crane/R/gg_pkc_lineplot.R |only crane-0.3.2/crane/R/gg_utils.R |only crane-0.3.2/crane/R/import-standalone-check_pkg_installed.R | 400 +-- crane-0.3.2/crane/R/import-standalone-checks.R | 1216 +++++----- crane-0.3.2/crane/R/import-standalone-cli_call_env.R | 108 crane-0.3.2/crane/R/import-standalone-forcats.R | 374 +-- crane-0.3.2/crane/R/import-standalone-purrr.R | 490 ++-- crane-0.3.2/crane/R/import-standalone-stringr.R | 304 +- crane-0.3.2/crane/R/import-standalone-tibble.R | 100 crane-0.3.2/crane/R/label_roche.R | 418 +-- crane-0.3.2/crane/R/modify_header_rm_md.R | 114 crane-0.3.2/crane/R/modify_zero_recode.R | 144 - crane-0.3.2/crane/R/reexport.R | 44 crane-0.3.2/crane/R/reverse_difference_ci.R |only crane-0.3.2/crane/R/tbl_baseline_chg.R | 633 ++--- crane-0.3.2/crane/R/tbl_coxph.R |only crane-0.3.2/crane/R/tbl_hierarchical_incidence_rate.R |only crane-0.3.2/crane/R/tbl_hierarchical_rate_and_count.R | 887 +++++-- crane-0.3.2/crane/R/tbl_hierarchical_rate_by_grade.R | 1114 ++++----- crane-0.3.2/crane/R/tbl_listing.R | 334 +- crane-0.3.2/crane/R/tbl_mmrm.R |only crane-0.3.2/crane/R/tbl_null_report.R | 2 crane-0.3.2/crane/R/tbl_rmpt.R |only crane-0.3.2/crane/R/tbl_roche_subgroups.R | 285 +- crane-0.3.2/crane/R/tbl_roche_summary.R | 258 +- crane-0.3.2/crane/R/tbl_shift.R | 626 ++--- crane-0.3.2/crane/R/tbl_survfit_quantiles.R | 594 ++-- crane-0.3.2/crane/R/tbl_survfit_times.R | 338 +- crane-0.3.2/crane/R/tbl_with_pools.R |only crane-0.3.2/crane/R/theme_gtsummary_roche.R | 19 crane-0.3.2/crane/R/utils.R | 127 - crane-0.3.2/crane/README.md | 2 crane-0.3.2/crane/inst/WORDLIST | 30 crane-0.3.2/crane/man/add_blank_rows.Rd | 106 crane-0.3.2/crane/man/add_forest.Rd |only crane-0.3.2/crane/man/add_hierarchical_count_row.Rd | 100 crane-0.3.2/crane/man/adjust_stat_columns_wrap.Rd |only crane-0.3.2/crane/man/annotate_gg_km.Rd | 266 +- crane-0.3.2/crane/man/annotate_lineplot_df.Rd |only crane-0.3.2/crane/man/annotate_pkc_df.Rd |only crane-0.3.2/crane/man/ard_tabulate_abnormal_by_baseline.Rd |only crane-0.3.2/crane/man/crane-package.Rd | 80 crane-0.3.2/crane/man/deprecated.Rd | 45 crane-0.3.2/crane/man/df2gg_aligned.Rd |only crane-0.3.2/crane/man/df2gg_floating.Rd |only crane-0.3.2/crane/man/df_add_poolings.Rd |only crane-0.3.2/crane/man/dot-calc_stats.Rd |only crane-0.3.2/crane/man/dot-format_pvalue.Rd |only crane-0.3.2/crane/man/dot-get_single_comp_table.Rd |only crane-0.3.2/crane/man/figures/README-tbl_print_simple-1.png |binary crane-0.3.2/crane/man/get_cox_pairwise_df.Rd | 218 + crane-0.3.2/crane/man/gg_add_stats.Rd |only crane-0.3.2/crane/man/gg_km.Rd | 252 +- crane-0.3.2/crane/man/gg_lineplot.Rd |only crane-0.3.2/crane/man/gg_mmrm_lineplot.Rd |only crane-0.3.2/crane/man/gg_pkc_lineplot.Rd |only crane-0.3.2/crane/man/gg_varname_extraction.Rd |only crane-0.3.2/crane/man/h_tbl_median_surv.Rd | 49 crane-0.3.2/crane/man/h_xticks.Rd | 49 crane-0.3.2/crane/man/label_roche.Rd | 328 +- crane-0.3.2/crane/man/modify_header_rm_md.Rd | 68 crane-0.3.2/crane/man/modify_zero_recode.Rd | 103 crane-0.3.2/crane/man/reexports.Rd | 44 crane-0.3.2/crane/man/reverse_ci.Rd |only crane-0.3.2/crane/man/reverse_rate_difference.Rd |only crane-0.3.2/crane/man/tbl_baseline_chg.Rd | 240 + crane-0.3.2/crane/man/tbl_coxph.Rd |only crane-0.3.2/crane/man/tbl_hierarchical_incidence_rate.Rd |only crane-0.3.2/crane/man/tbl_hierarchical_rate_and_count.Rd | 264 +- crane-0.3.2/crane/man/tbl_hierarchical_rate_by_grade.Rd | 409 +-- crane-0.3.2/crane/man/tbl_listing.Rd | 237 - crane-0.3.2/crane/man/tbl_mmrm.Rd |only crane-0.3.2/crane/man/tbl_null_report.Rd | 45 crane-0.3.2/crane/man/tbl_rmpt.Rd |only crane-0.3.2/crane/man/tbl_roche_subgroups.Rd | 142 - crane-0.3.2/crane/man/tbl_roche_summary.Rd | 212 - crane-0.3.2/crane/man/tbl_shift.Rd | 370 +-- crane-0.3.2/crane/man/tbl_survfit_quantiles.Rd | 318 +- crane-0.3.2/crane/man/tbl_survfit_times.Rd | 292 +- crane-0.3.2/crane/man/tbl_with_pools.Rd |only crane-0.3.2/crane/man/theme_gtsummary_roche.Rd | 106 crane-0.3.2/crane/tests/testthat.R | 27 crane-0.3.2/crane/tests/testthat/_snaps/add_blank_rows.md | 36 crane-0.3.2/crane/tests/testthat/_snaps/add_difference_row.md | 112 crane-0.3.2/crane/tests/testthat/_snaps/add_grade_column.md |only crane-0.3.2/crane/tests/testthat/_snaps/add_hierarchical_count_row.md | 50 crane-0.3.2/crane/tests/testthat/_snaps/ard_tabulate_abnormal_by_baseline.md |only crane-0.3.2/crane/tests/testthat/_snaps/df_add_poolings.md |only crane-0.3.2/crane/tests/testthat/_snaps/modify_zero_recode.md | 28 crane-0.3.2/crane/tests/testthat/_snaps/tbl_baseline_chg.md | 374 +-- crane-0.3.2/crane/tests/testthat/_snaps/tbl_hierarchical_rate_and_count.md | 176 - crane-0.3.2/crane/tests/testthat/_snaps/tbl_hierarchical_rate_by_grade.md | 352 +- crane-0.3.2/crane/tests/testthat/_snaps/tbl_listing.md | 236 - crane-0.3.2/crane/tests/testthat/_snaps/tbl_rmpt.md |only crane-0.3.2/crane/tests/testthat/_snaps/tbl_roche_subgroups.md |only crane-0.3.2/crane/tests/testthat/_snaps/tbl_roche_summary.md | 72 crane-0.3.2/crane/tests/testthat/_snaps/tbl_shift.md | 210 - crane-0.3.2/crane/tests/testthat/_snaps/tbl_survfit_quantiles.md | 152 - crane-0.3.2/crane/tests/testthat/_snaps/tbl_survfit_times.md | 146 - crane-0.3.2/crane/tests/testthat/_snaps/tbl_with_pools.md |only crane-0.3.2/crane/tests/testthat/_snaps/theme_gtsummary_roche.md | 106 crane-0.3.2/crane/tests/testthat/setup-theme.R | 2 crane-0.3.2/crane/tests/testthat/test-add_difference_row.R | 146 - crane-0.3.2/crane/tests/testthat/test-add_forest.R |only crane-0.3.2/crane/tests/testthat/test-add_grade_column.R |only crane-0.3.2/crane/tests/testthat/test-add_hierarchical_count_row.R | 120 crane-0.3.2/crane/tests/testthat/test-adjust_stat_columns_wrap.R |only crane-0.3.2/crane/tests/testthat/test-annotate_gg.R |only crane-0.3.2/crane/tests/testthat/test-annotate_gg_km.R |only crane-0.3.2/crane/tests/testthat/test-annotate_gg_pkc.R |only crane-0.3.2/crane/tests/testthat/test-ard_tabulate_abnormal_by_baseline.R |only crane-0.3.2/crane/tests/testthat/test-check_formula_for_namespace.R |only crane-0.3.2/crane/tests/testthat/test-df_add_poolings.R |only crane-0.3.2/crane/tests/testthat/test-get_cox_pairwise_df.R |only crane-0.3.2/crane/tests/testthat/test-gg_km.R | 121 crane-0.3.2/crane/tests/testthat/test-gg_lineplot.R |only crane-0.3.2/crane/tests/testthat/test-gg_mmrm_lineplot.R |only crane-0.3.2/crane/tests/testthat/test-gg_pkc_lineplot.R |only crane-0.3.2/crane/tests/testthat/test-gg_utils.R |only crane-0.3.2/crane/tests/testthat/test-label_roche.R | 110 crane-0.3.2/crane/tests/testthat/test-modify_header_rm_md.R | 58 crane-0.3.2/crane/tests/testthat/test-modify_zero_recode.R | 160 - crane-0.3.2/crane/tests/testthat/test-revert_direction.R |only crane-0.3.2/crane/tests/testthat/test-tbl_baseline_chg.R | 391 +-- crane-0.3.2/crane/tests/testthat/test-tbl_coxph.R |only crane-0.3.2/crane/tests/testthat/test-tbl_hierarchical_incidence_rate.R |only crane-0.3.2/crane/tests/testthat/test-tbl_hierarchical_rate_and_count.R | 369 +-- crane-0.3.2/crane/tests/testthat/test-tbl_hierarchical_rate_by_grade.R | 856 +++---- crane-0.3.2/crane/tests/testthat/test-tbl_listing.R | 208 - crane-0.3.2/crane/tests/testthat/test-tbl_mmrm.R |only crane-0.3.2/crane/tests/testthat/test-tbl_rmpt.R |only crane-0.3.2/crane/tests/testthat/test-tbl_roche_subgroups.R |only crane-0.3.2/crane/tests/testthat/test-tbl_roche_summary.R | 190 - crane-0.3.2/crane/tests/testthat/test-tbl_shift.R | 356 +- crane-0.3.2/crane/tests/testthat/test-tbl_survfit_quantiles.R | 238 - crane-0.3.2/crane/tests/testthat/test-tbl_survfit_times.R | 182 - crane-0.3.2/crane/tests/testthat/test-tbl_with_pools.R |only crane-0.3.2/crane/tests/testthat/test-theme_gtsummary_roche.R | 250 +- 168 files changed, 11648 insertions(+), 9889 deletions(-)
Title: Pull Data from an 'ArcGIS REST' API
Description: Functions to efficiently query 'ArcGIS REST' APIs
<https://developers.arcgis.com/rest/>.
Both spatial and SQL queries can be used to retrieve data.
Simple Feature (sf) objects are utilized to perform spatial queries.
This package was neither produced nor is maintained by Esri.
Author: Paul Frater [aut, cre] ,
Zac Driscoll [aut]
Maintainer: Paul Frater <paul.frater@wisconsin.gov>
Diff between arcpullr versions 0.3.2 dated 2025-12-12 and 0.3.5 dated 2026-06-03
DESCRIPTION | 6 MD5 | 20 +- R/retrieve_layers.R | 141 +++++++++++++++----- R/retrieve_layers_by_geometry.R | 277 ++++++++++++++++++++++------------------ inst/doc/intro_to_arcpullr.html | 2 inst/doc/raster_layers.html | 2 inst/doc/spatial_queries.R | 4 inst/doc/spatial_queries.Rmd | 4 inst/doc/spatial_queries.html | 10 - man/get_layers_by_spatial.Rd | 9 + vignettes/spatial_queries.Rmd | 4 11 files changed, 293 insertions(+), 186 deletions(-)
Title: Geocoding with the 'ArcGIS' REST API Service
Description: Lightweight interface for converting addresses into
geographic coordinates and coordinates into addresses using the
'ArcGIS' REST API service
<https://developers.arcgis.com/rest/geocode/api-reference/overview-world-geocoding-service.htm>.
Address text can be converted to location candidates and locations can
be converted into addresses. No API key is required.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between arcgeocoder versions 0.4.0 dated 2026-03-20 and 0.4.1 dated 2026-06-03
DESCRIPTION | 22 MD5 | 100 +-- NEWS.md | 32 - R/arc_geo.R | 145 ++--- R/arc_geo_categories.R | 568 ++++++++++------------ R/arc_geo_multi.R | 508 +++++++++---------- R/arc_reverse_geo.R | 182 ++----- R/arcgeocoder-package.R | 20 R/arcgeocoder_check_access.R | 200 ++----- R/data.R | 331 ++++++------ R/utils.R | 355 ++++++++++++- README.md | 126 ++-- build/vignette.rds |binary data/arc_categories.rda |binary data/arc_spatial_references.rda |binary inst/CITATION | 46 - inst/REFERENCES.bib | 48 - inst/WORDLIST | 110 ++-- inst/doc/arcgeocoder.html | 95 +-- inst/doc/arcgeocoder.qmd | 102 +-- inst/doc/feature-types.html | 39 - inst/doc/feature-types.qmd | 88 +-- inst/schemaorg.json | 6 man/arc_categories.Rd | 186 +++---- man/arc_geo.Rd | 243 ++++----- man/arc_geo_categories.Rd | 385 +++++++------- man/arc_geo_multi.Rd | 364 +++++++------- man/arc_reverse_geo.Rd | 282 +++++----- man/arc_spatial_references.Rd | 164 +++--- man/arcgeocoder-package.Rd | 57 +- man/arcgeocoder_check_access.Rd | 45 - man/chunks/out1.Rmd | 4 man/figures/README-eiffel-1.png |binary man/figures/README-eiffel_sf-1.png |binary man/roxygen/meta.R | 10 tests/testthat.R | 24 tests/testthat/_snaps/arc_geo.md | 8 tests/testthat/_snaps/arc_geo_categories.md | 32 - tests/testthat/_snaps/arc_geo_multi.md | 8 tests/testthat/_snaps/arc_reverse_geo.md | 2 tests/testthat/_snaps/arcgeocoder_check_access.md |only tests/testthat/helper.R |only tests/testthat/test-arc_geo.R | 466 +++++++++--------- tests/testthat/test-arc_geo_categories.R | 363 ++++++-------- tests/testthat/test-arc_geo_multi.R | 49 - tests/testthat/test-arc_reverse_geo.R | 451 +++++++++-------- tests/testthat/test-arcgeocoder_check_access.R | 36 + tests/testthat/test-utils.R | 88 ++- vignettes/REFERENCES.bib | 48 - vignettes/arcgeocoder.qmd | 102 +-- vignettes/eiffel-1.png |binary vignettes/feature-types.qmd | 88 +-- 52 files changed, 3391 insertions(+), 3237 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-21 1.0.1
2026-05-19 1.0.0