Title: Extended Dynamic Quantile Linear Models
Description: Bayesian quantile-regression routines for dynamic state-space
models and static regression under the extended asymmetric Laplace
(exAL) error distribution. The dynamic state-space models are extended
dynamic quantile linear models (exDQLMs). The package combines dynamic
exDQLM inference via LDVB, MCMC, and legacy ISVB with static exAL
regression via LDVB and MCMC, reduced AL/DQLM paths through fixed
skewness, component builders for trend/seasonality/regression blocks,
static shrinkage priors including ridge, regularized horseshoe, and
'rhs_ns', evidence lower bound diagnostics, optional C++ accelerators,
and posterior predictive synthesis across separately fitted quantiles
through 'quantileSynthesis()'. Dynamic exDQLM methods are described in
Barata et al. (2020) <doi:10.1214/21-AOAS1497>.
Author: Raquel Barata [aut, cre],
Raquel Prado [ths],
Bruno Sanso [ths],
Antonio Aguirre [aut]
Maintainer: Raquel Barata <raquel.a.barata@gmail.com>
Diff between exdqlm versions 0.4.0 dated 2026-05-04 and 1.0.0 dated 2026-06-04
DESCRIPTION | 12 MD5 | 80 ++-- NAMESPACE | 4 NEWS.md | 34 +- R/compPlot.R | 41 +- R/exalStaticDiagnostics.R | 254 +++++++++++++-- R/exdqlm-package.R | 27 + R/exdqlmDiagnostics.R | 113 +++++- R/exdqlmForecast.R | 45 +- R/exdqlmForecastDiagnostics.R |only R/exdqlmPlot.R | 41 +- R/kl_diagnostics.R |only R/utils.R | 78 ++++ README.md | 13 build/partial.rdb |binary man/compPlot.Rd | 24 + man/exalStaticDiagnostics.Rd | 15 man/exdqlm-package.Rd | 30 + man/exdqlmDiagnostics.Rd | 74 +++- man/exdqlmForecastDiagnostics.Rd |only man/exdqlmPlot.Rd | 29 + man/is.exdqlmForecastDiagnostic.Rd |only man/plot.exalStaticDiagnostic.Rd | 42 ++ man/print.exdqlmForecastDiagnostic.Rd |only man/summary.exdqlmForecastDiagnostic.Rd |only tests/testthat.R | 15 tests/testthat/setup-cran-thread-controls.R |only tests/testthat/test-crps-helper-regression.R | 35 ++ tests/testthat/test-diagnostics-metrics.R | 72 ++++ tests/testthat/test-dqlm-reduced-paths.R | 32 + tests/testthat/test-exal-inference-config.R | 2 tests/testthat/test-exdqlm-transfer-mcmc.R | 26 + tests/testthat/test-forecast-diagnostics.R |only tests/testthat/test-kl-diagnostics.R |only tests/testthat/test-mcmc-backend-routing.R | 2 tests/testthat/test-mcmc-dynamic-fastmode-stat-parity.R | 2 tests/testthat/test-mcmc-dynamic-strict-parity.R | 2 tests/testthat/test-static-beta-prior-rhs.R | 2 tests/testthat/test-static-class-generics.R | 2 tests/testthat/test-static-diagnostic-coefficient-plot.R |only tests/testthat/test-static-diagnostics.R | 47 ++ tests/testthat/test-static-exal-gamma-band-reduction.R | 2 tests/testthat/test-static-fit-normalization.R | 2 tests/testthat/test-static-p025-stability.R | 2 tests/testthat/test-static-regression-regmod.R | 2 tests/testthat/test-vb-mcmc-convergence-controls.R | 2 46 files changed, 1034 insertions(+), 171 deletions(-)
Title: Detect the Shape of Dose-Response Curves
Description: Provides functions for hormesis screening by classifying the shapes of dose-response curves based on semiparametric tests. The shapes are indications of different potential toxicology effect. It also offers a scalable visualization scheme to present testing conclusions for large-scale dataset with a large number of dose-response curves. For more information, see Jin et al. (2026) <https://github.com/YinglJin-0203/shorm/blob/main/Manuscripts/BotanicalHormesisTestingFinalDraft.docx>.
Author: Eric Bair [aut, cre],
Ying Jin [aut, cph]
Maintainer: Eric Bair <software.tools@sciome.com>
Diff between shorm versions 0.1.3 dated 2026-04-29 and 0.2.1 dated 2026-06-04
DESCRIPTION | 8 ++--- MD5 | 10 +++--- NAMESPACE | 2 + NEWS.md | 6 +++ R/SharpScatter.R | 82 +++++++++++++++++++++++++++++++++++++++------------- man/SharpScatter.Rd | 11 +++++- 6 files changed, 88 insertions(+), 31 deletions(-)
Title: Clean and Harmonise 'Malawi Integrated Household Survey' Data
Description: An offline suite of tools to clean, aggregate, and harmonise data
from the 'Malawi Integrated Household Survey' ('IHS'). Provides crop-specific
unit conversions, stratified winsorization, and automatic cross-round harmonisation
for complex survey designs.
Author: Vitumbiko Kayuni [aut, cre]
Maintainer: Vitumbiko Kayuni <vitumbikokayuni@gmail.com>
Diff between ihsMW versions 0.1.5 dated 2026-05-04 and 0.2.1 dated 2026-06-04
ihsMW-0.1.5/ihsMW/R/IHS.R |only ihsMW-0.1.5/ihsMW/R/IHS_survey.R |only ihsMW-0.1.5/ihsMW/R/harmonise.R |only ihsMW-0.1.5/ihsMW/R/ihs_auth.R |only ihsMW-0.1.5/ihsMW/R/ihs_cache.R |only ihsMW-0.1.5/ihsMW/R/ihs_download.R |only ihsMW-0.1.5/ihsMW/R/ihs_label.R |only ihsMW-0.1.5/ihsMW/R/nada_api.R |only ihsMW-0.1.5/ihsMW/man/IHS.Rd |only ihsMW-0.1.5/ihsMW/man/IHS_survey.Rd |only ihsMW-0.1.5/ihsMW/man/ihs_auth.Rd |only ihsMW-0.1.5/ihsMW/man/ihs_cache_clear.Rd |only ihsMW-0.1.5/ihsMW/man/ihs_cache_info.Rd |only ihsMW-0.1.5/ihsMW/man/ihs_key_set.Rd |only ihsMW-0.1.5/ihsMW/man/ihs_label.Rd |only ihsMW-0.1.5/ihsMW/man/ihs_modules.Rd |only ihsMW-0.1.5/ihsMW/man/ihs_variables.Rd |only ihsMW-0.1.5/ihsMW/tests/testthat/fixtures |only ihsMW-0.1.5/ihsMW/tests/testthat/test-IHS.R |only ihsMW-0.1.5/ihsMW/tests/testthat/test-auth.R |only ihsMW-0.1.5/ihsMW/tests/testthat/test-cache.R |only ihsMW-0.1.5/ihsMW/tests/testthat/test-crosswalk.R |only ihsMW-0.1.5/ihsMW/tests/testthat/test-download.R |only ihsMW-0.1.5/ihsMW/tests/testthat/test-nada-api.R |only ihsMW-0.1.5/ihsMW/tests/testthat/test-search.R |only ihsMW-0.1.5/ihsMW/tests/testthat/test-survey.R |only ihsMW-0.2.1/ihsMW/DESCRIPTION | 29 ++--- ihsMW-0.2.1/ihsMW/MD5 | 74 +++++-------- ihsMW-0.2.1/ihsMW/NAMESPACE | 16 +- ihsMW-0.2.1/ihsMW/R/ihs_aggregate.R |only ihsMW-0.2.1/ihsMW/R/ihs_clean.R |only ihsMW-0.2.1/ihsMW/R/ihs_convert.R |only ihsMW-0.2.1/ihsMW/R/ihs_crosswalk_check.R |only ihsMW-0.2.1/ihsMW/R/ihs_harmonise.R |only ihsMW-0.2.1/ihsMW/R/ihs_search.R | 54 --------- ihsMW-0.2.1/ihsMW/R/load_crosswalk.R |only ihsMW-0.2.1/ihsMW/R/utils.R | 70 ------------ ihsMW-0.2.1/ihsMW/R/zzz.R | 7 - ihsMW-0.2.1/ihsMW/README.md | 51 ++++++-- ihsMW-0.2.1/ihsMW/inst/WORDLIST | 6 + ihsMW-0.2.1/ihsMW/inst/doc/getting-started.html | 5 ihsMW-0.2.1/ihsMW/inst/doc/harmonisation.R | 9 - ihsMW-0.2.1/ihsMW/inst/doc/harmonisation.Rmd | 27 +++- ihsMW-0.2.1/ihsMW/inst/doc/harmonisation.html | 39 ++++-- ihsMW-0.2.1/ihsMW/inst/doc/survey-weights.html | 5 ihsMW-0.2.1/ihsMW/inst/extdata/crop_conversion_factors.csv |only ihsMW-0.2.1/ihsMW/man/ihs_aggregate.Rd |only ihsMW-0.2.1/ihsMW/man/ihs_clean.Rd |only ihsMW-0.2.1/ihsMW/man/ihs_convert_units.Rd |only ihsMW-0.2.1/ihsMW/man/ihs_crosswalk_check.Rd | 19 +-- ihsMW-0.2.1/ihsMW/man/ihs_harmonise.Rd |only ihsMW-0.2.1/ihsMW/man/ihs_standardize_missing.Rd |only ihsMW-0.2.1/ihsMW/man/ihs_winsorize.Rd |only ihsMW-0.2.1/ihsMW/tests/testthat/test-ihs_clean.R |only ihsMW-0.2.1/ihsMW/tests/testthat/test-ihs_harmonise.R |only ihsMW-0.2.1/ihsMW/tests/testthat/test-ihs_search.R |only ihsMW-0.2.1/ihsMW/tests/testthat/test-utils.R | 15 -- ihsMW-0.2.1/ihsMW/vignettes/harmonisation.Rmd | 27 +++- 58 files changed, 187 insertions(+), 266 deletions(-)
Title: Semi-Supervised Bayesian Mixture Models Incorporating Batch
Correction
Description: Semi-supervised and unsupervised Bayesian mixture models that
simultaneously infer the cluster/class structure and a batch correction.
Densities available are the multivariate normal and the multivariate t.
The model sampler is implemented in C++. This package is aimed at analysis of
low-dimensional data generated across several batches. See Coleman et al.
(2022) <doi:10.1101/2022.01.14.476352> for details of the model.
Author: Stephen Coleman [aut, cre],
Paul Kirk [aut],
Chris Wallace [aut]
Maintainer: Stephen Coleman <stcolema@tcd.ie>
Diff between batchmix versions 2.2.1 dated 2024-05-21 and 2.2.2 dated 2026-06-04
DESCRIPTION | 8 +- MD5 | 30 ++++---- R/batchmix-package.R | 1 R/predictFromMultipleChains.R | 6 + build/vignette.rds |binary inst/doc/batchmix_workflow.R | 10 +- inst/doc/batchmix_workflow.Rmd | 10 +- inst/doc/batchmix_workflow.html | 143 ++++++++++++++++++++------------------- man/predictFromMultipleChains.Rd | 5 + src/Makevars | 3 src/Makevars.win | 3 src/mvnSampler.cpp | 31 +------- src/mvnSampler.h | 9 -- src/mvtSampler.cpp | 5 - src/mvtSampler.h | 2 vignettes/batchmix_workflow.Rmd | 10 +- 16 files changed, 132 insertions(+), 144 deletions(-)
Title: Automated Statistical Analysis and Table Generation for
Biomedical Research
Description: Generates publication-ready summary tables for clinical research,
supporting descriptive summaries and comparisons across two or three groups.
The package streamlines the analytical workflow by detecting variable types
and applying appropriate statistical tests (Welch t-test, Wilcoxon rank-sum,
Welch ANOVA, Kruskal-Wallis, Chi-squared, or Fisher's exact test). Results are
formatted as 'tibble' objects and can be exported to 'Word' or 'Excel' using
the 'officer', 'flextable', and 'writexl' packages. Optional pairwise
post-hoc testing for three-group comparisons (Games-Howell and Dunn's
test) is available via the 'rstatix' package. Example data are derived
from the landmark adjuvant colon cancer trial described in
Moertel et al. (1990) <doi:10.1056/NEJM199002083220602>.
Author: Joshua D. Preston [aut, cre] ,
Helen Abadiotakis [aut] ,
Ailin Tang [aut] ,
Clayton J. Rust [aut] ,
Michael E. Halkos [aut] ,
Mani A. Daneshmand [aut] ,
Joshua L. Chan [aut]
Maintainer: Joshua D. Preston <joshua.preston@emory.edu>
Diff between TernTables versions 1.6.4 dated 2026-03-26 and 1.7.2 dated 2026-06-04
TernTables-1.6.4/TernTables/R/ternB.r |only TernTables-1.7.2/TernTables/DESCRIPTION | 30 TernTables-1.7.2/TernTables/MD5 | 71 TernTables-1.7.2/TernTables/NAMESPACE | 10 TernTables-1.7.2/TernTables/NEWS.md | 216 ++ TernTables-1.7.2/TernTables/R/TernTables-package.R | 26 TernTables-1.7.2/TernTables/R/classify_normality.R |only TernTables-1.7.2/TernTables/R/export_to_word.R | 384 ++++- TernTables-1.7.2/TernTables/R/imports.R | 11 TernTables-1.7.2/TernTables/R/ternB.R |only TernTables-1.7.2/TernTables/R/ternD.R | 256 ++- TernTables-1.7.2/TernTables/R/ternG.R | 732 ++++++++-- TernTables-1.7.2/TernTables/R/ternP.R | 213 ++ TernTables-1.7.2/TernTables/R/ternStyle.R |only TernTables-1.7.2/TernTables/R/utils_format.R | 55 TernTables-1.7.2/TernTables/R/utils_naming.R | 19 TernTables-1.7.2/TernTables/R/utils_normality.R |only TernTables-1.7.2/TernTables/R/utils_posthoc.R | 54 TernTables-1.7.2/TernTables/R/utils_preprocess.R | 55 TernTables-1.7.2/TernTables/R/write_cleaning_doc.R | 32 TernTables-1.7.2/TernTables/R/write_methods_doc.R | 422 +++++ TernTables-1.7.2/TernTables/README.md | 112 + TernTables-1.7.2/TernTables/inst/CITATION | 16 TernTables-1.7.2/TernTables/inst/doc/getting-started.R | 83 + TernTables-1.7.2/TernTables/inst/doc/getting-started.Rmd | 224 ++- TernTables-1.7.2/TernTables/inst/doc/getting-started.html | 463 ++++-- TernTables-1.7.2/TernTables/man/TernTables-package.Rd | 31 TernTables-1.7.2/TernTables/man/classify_normality.Rd |only TernTables-1.7.2/TernTables/man/ternB.Rd | 28 TernTables-1.7.2/TernTables/man/ternD.Rd | 93 + TernTables-1.7.2/TernTables/man/ternG.Rd | 165 ++ TernTables-1.7.2/TernTables/man/ternP.Rd | 53 TernTables-1.7.2/TernTables/man/ternStyle.Rd |only TernTables-1.7.2/TernTables/man/word_export.Rd | 116 + TernTables-1.7.2/TernTables/man/write_cleaning_doc.Rd | 20 TernTables-1.7.2/TernTables/man/write_methods_doc.Rd | 105 + TernTables-1.7.2/TernTables/vignettes/figures/tern_2_group.png |binary TernTables-1.7.2/TernTables/vignettes/figures/tern_3_group.png |binary TernTables-1.7.2/TernTables/vignettes/figures/tern_descriptive.png |binary TernTables-1.7.2/TernTables/vignettes/getting-started.Rmd | 224 ++- 40 files changed, 3723 insertions(+), 596 deletions(-)
Title: Mock Data Generation
Description: Generation of mock data from a real dataset using rank normal inverse transformation.
Author: Andreas Ziegler [aut],
Francisco Miguel Echevarria [aut, ctb],
George Koliopanos [aut, cre]
Maintainer: George Koliopanos <george.koliopanos@cardio-care.ch>
Diff between modgo versions 1.0.1 dated 2024-09-11 and 1.1.0 dated 2026-06-04
modgo-1.0.1/modgo/inst/CITATION |only modgo-1.1.0/modgo/DESCRIPTION | 47 - modgo-1.1.0/modgo/MD5 | 89 +- modgo-1.1.0/modgo/NAMESPACE | 8 modgo-1.1.0/modgo/R/Sigma_calculation.R | 8 modgo-1.1.0/modgo/R/Sigma_calculation_svy.R |only modgo-1.1.0/modgo/R/Sigma_transformation.R | 13 modgo-1.1.0/modgo/R/Sigma_transformation_svy.R |only modgo-1.1.0/modgo/R/checkArguments.R | 100 --- modgo-1.1.0/modgo/R/checkArguments_svy.R |only modgo-1.1.0/modgo/R/corr_plotting.R | 11 modgo-1.1.0/modgo/R/data.R | 28 modgo-1.1.0/modgo/R/distr_plots.R | 14 modgo-1.1.0/modgo/R/generalised_prep.R | 18 modgo-1.1.0/modgo/R/generate_simulated_data.R | 2 modgo-1.1.0/modgo/R/generate_simulated_data_svy.R |only modgo-1.1.0/modgo/R/inverse_transformation.R | 11 modgo-1.1.0/modgo/R/inverse_transformation_gener.R | 14 modgo-1.1.0/modgo/R/inverse_transformation_svy.R |only modgo-1.1.0/modgo/R/inverse_transformation_variables.R | 8 modgo-1.1.0/modgo/R/modgo.R | 140 ++-- modgo-1.1.0/modgo/R/modgo_survival.R | 85 +- modgo-1.1.0/modgo/R/modgo_svy.R |only modgo-1.1.0/modgo/R/multicenter_comb.R | 3 modgo-1.1.0/modgo/R/rank_transform.R | 27 modgo-1.1.0/modgo/R/rank_transform_svy.R |only modgo-1.1.0/modgo/README.md | 2 modgo-1.1.0/modgo/build/vignette.rds |binary modgo-1.1.0/modgo/inst/doc/modgo_vignette.R | 6 modgo-1.1.0/modgo/inst/doc/modgo_vignette.Rmd | 28 modgo-1.1.0/modgo/inst/doc/modgo_vignette.html | 432 +++++++------- modgo-1.1.0/modgo/man/Cleveland.Rd | 29 modgo-1.1.0/modgo/man/Inverse_transformation_variables.Rd | 8 modgo-1.1.0/modgo/man/Sigma_calculation.Rd | 2 modgo-1.1.0/modgo/man/Sigma_calculation_svy.Rd |only modgo-1.1.0/modgo/man/Sigma_transformation.Rd | 2 modgo-1.1.0/modgo/man/Sigma_transformation_svy.Rd |only modgo-1.1.0/modgo/man/checkArguments.Rd | 295 ++++----- modgo-1.1.0/modgo/man/checkArguments_svy.Rd |only modgo-1.1.0/modgo/man/corr_plots.Rd | 10 modgo-1.1.0/modgo/man/distr_plots.Rd | 104 +-- modgo-1.1.0/modgo/man/general_transform_inv.Rd | 12 modgo-1.1.0/modgo/man/generalizedMatrix.Rd | 15 modgo-1.1.0/modgo/man/generate_simulated_data_svy.Rd |only modgo-1.1.0/modgo/man/modgo.Rd | 130 ++-- modgo-1.1.0/modgo/man/modgo_survival.Rd | 84 +- modgo-1.1.0/modgo/man/modgo_svy.Rd |only modgo-1.1.0/modgo/man/multicenter_comb.Rd | 3 modgo-1.1.0/modgo/man/rbi_normal_transform.Rd | 27 modgo-1.1.0/modgo/man/rbi_normal_transform_inv.Rd | 11 modgo-1.1.0/modgo/man/rbi_normal_transform_inv_svy.Rd |only modgo-1.1.0/modgo/man/rbi_normal_transform_svy.Rd |only modgo-1.1.0/modgo/vignettes/modgo_vignette.Rmd | 28 53 files changed, 912 insertions(+), 942 deletions(-)
Title: Physics-Informed Spatial and Functional Data Analysis
Description: An implementation of regression models with partial differential regularizations, making use of the Finite Element Method. The models efficiently handle data distributed over irregularly shaped domains and can comply with various conditions at the boundaries of the domain. A priori information about the spatial structure of the phenomenon under study can be incorporated in the model via the differential regularization. See Sangalli, L. M. (2021) <doi:10.1111/insr.12444> "Spatial Regression With Partial Differential Equation Regularisation" for an overview. The release 1.1-9 requires R (>= 4.2.0) to be installed on windows machines.
Author: Eleonora Arnone [aut, cre],
Aldo Clemente [aut],
Laura M. Sangalli [aut],
Eardi Lila [aut],
Jim Ramsay [aut],
Luca Formaggia [aut],
Giovanni Ardenghi [ctb],
Blerta Begu [ctb],
Michele Cavazzutti [ctb],
Alessandra Colli [ctb],
Alberto Colombo [ctb],
L [...truncated...]
Maintainer: Eleonora Arnone <eleonora.arnone@polimi.it>
Diff between fdaPDE versions 1.1-21 dated 2025-01-08 and 1.1-24 dated 2026-06-04
DESCRIPTION | 12 - MD5 | 26 +-- R/DE_CPP_time.R | 64 +++++++ R/DE_init_CPP_time.R | 58 ++++++ R/DE_init_time.R | 18 +- R/DE_time.R | 16 + R/smoothing_CPP.R | 68 ++++++++ src/Density_Estimation/Include/Data_Problem_imp.h | 2 src/Density_Estimation/Source/Rfun_Density_Estimation.cpp | 118 +++++++------- src/FdaPDE_init.c | 2 src/Regression/Source/Rfun_Auxiliary.cpp | 29 +++ src/Skeletons/Include/Auxiliary_Skeleton.h | 53 ++++++ src/Skeletons/Include/DE_Initialization_Skeleton.h | 8 src/Skeletons/Include/DE_Initialization_Skeleton_Time.h | 10 - 14 files changed, 397 insertions(+), 87 deletions(-)
Title: The Serial Interface Package
Description: Enables reading and writing binary and ASCII data to
RS232/RS422/RS485 or any other virtual serial interface of the
computer.
Author: Martin Seilmayer [aut, cre]
Maintainer: Martin Seilmayer <martin.seilmayer@dhsn.de>
Diff between serial versions 3.0 dated 2020-05-14 and 3.1.1 dated 2026-06-04
serial-3.0/serial/man/serial.Rd |only serial-3.1.1/serial/DESCRIPTION | 17 + serial-3.1.1/serial/MD5 | 34 +-- serial-3.1.1/serial/NAMESPACE | 1 serial-3.1.1/serial/NEWS | 63 +++--- serial-3.1.1/serial/R/close.R | 52 ++--- serial-3.1.1/serial/R/flush.R | 56 ++--- serial-3.1.1/serial/R/isOpen.R | 107 +++++----- serial-3.1.1/serial/R/listPorts.R | 215 +++++++++++---------- serial-3.1.1/serial/R/nBytes.R | 46 ++-- serial-3.1.1/serial/R/open.R | 114 +++++------ serial-3.1.1/serial/R/pkgname.R | 196 +++++++++---------- serial-3.1.1/serial/R/read.R | 2 serial-3.1.1/serial/R/write.R | 2 serial-3.1.1/serial/man/isOpen.Rd | 32 +-- serial-3.1.1/serial/man/isOpen.default.Rd | 40 ++- serial-3.1.1/serial/man/isOpen.serialConnection.Rd | 4 serial-3.1.1/serial/man/listPorts.Rd | 3 serial-3.1.1/serial/man/serial-package.Rd |only 19 files changed, 508 insertions(+), 476 deletions(-)
Title: Scholarly and Academic Identifier Utilities
Description: Detects, normalizes, classifies, and extracts scholarly identifier
strings. Provides lightweight, dependency-free helpers for twenty
identifier types, including DOIs, ORCID iDs, ISBNs, ISSNs, arXiv and
PubMed identifiers, ROR and ISNI, OpenAlex and ADS bibcodes, RRID, ARK,
SWHID, and selected life-science accessions (UniProt, RefSeq, SRA, GEO,
BioProject, and genome assemblies). Functions are vectorized, predictable,
and suitable as low-level building blocks for other R packages and data
workflows. Use 'scholid_types()' for the authoritative type list. For
online lookup, conversion, metadata retrieval, and linked identifier
discovery, see 'scholidonline'.
Author: Thomas Rauter [aut, cre, fnd]
Maintainer: Thomas Rauter <rauterthomas0@gmail.com>
Diff between scholid versions 0.1.1 dated 2026-04-24 and 0.2.0 dated 2026-06-04
DESCRIPTION | 21 MD5 | 63 - NEWS.md | 38 R/classify_scholid.R | 25 R/detect_scholid_type.R | 57 - R/extract_scholid.R | 949 ++++++++++++++++----- R/input_validation.R | 111 ++ R/is_idtype_functions.R | 1177 +++++++++++++++++++++++++- R/is_scholid.R | 36 R/normalize_scholid.R | 788 +++++++++++++++-- R/scholid-package.R |only R/scholid_registry.R | 359 +++++++- R/scholid_types.R | 9 README.md | 25 inst/WORDLIST | 41 inst/doc/get_started.Rmd | 22 inst/doc/get_started.html | 28 inst/doc/scholid_definitions.Rmd | 778 +++++++++++++++++ inst/doc/scholid_definitions.html | 816 +++++++++++++++++- man/classify_scholid.Rd | 11 man/detect_scholid_type.Rd | 1 man/is_scholid.Rd | 14 man/normalize_scholid.Rd | 12 man/scholid-package.Rd |only man/scholid_types.Rd | 7 tests/testthat/test-classify_scholid.R | 482 ++++++++++ tests/testthat/test-detect_scholid_type.R | 738 ++++++++++++++++ tests/testthat/test-extract_scholid.R | 946 ++++++++++++++++++++- tests/testthat/test-is_scholid.R | 1334 ++++++++++++++++++++++++++++++ tests/testthat/test-normalize_scholid.R | 938 +++++++++++++++++++++ tests/testthat/test-scholid_registry.R |only tests/testthat/test-scholid_types.R | 25 vignettes/get_started.Rmd | 22 vignettes/scholid_definitions.Rmd | 778 +++++++++++++++++ 34 files changed, 10020 insertions(+), 631 deletions(-)
Title: 'LuaJIT' Scripting
Description: An interface to 'LuaJIT' <https://luajit.org>, a just-in-time
compiler for the 'Lua' scripting language <https://www.lua.org>. Allows
users to run 'Lua' code from 'R'.
Author: Mike Pall [aut, cph] ,
Lua.org, PUC-Rio [cph] ,
Nicholas Davies [cre, ctb, cph] ,
Scott Lembcke, Howling Moon Software [ctb, cph]
Maintainer: Nicholas Davies <nicholas.davies@lshtm.ac.uk>
Diff between luajr versions 0.3.0 dated 2026-06-02 and 0.3.1 dated 2026-06-04
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ inst/Lua/R.lua | 7 ++++--- inst/Lua/luajr.lua | 35 ++++++++++++++++++++++++++++------- src/luajrstdr.cpp | 25 ++++++++++++++++++++++--- tests/testthat/test-integer.R | 25 +++++++++++++++++++++++++ tests/testthat/test-logical.R | 26 ++++++++++++++++++++++++++ tests/testthat/test-numeric.R | 22 ++++++++++++++++++++++ 9 files changed, 143 insertions(+), 24 deletions(-)
Title: Get Data for Brazilian Bonds (Tesouro Direto)
Description: Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <https://www.tesourodireto.com.br/>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetTDData versions 1.5.7 dated 2025-05-19 and 1.6.0 dated 2026-06-04
GetTDData-1.5.7/GetTDData/man/get.yield.curve.Rd |only GetTDData-1.6.0/GetTDData/DESCRIPTION | 12 - GetTDData-1.6.0/GetTDData/MD5 | 36 ++--- GetTDData-1.6.0/GetTDData/NAMESPACE | 1 GetTDData-1.6.0/GetTDData/NEWS.md | 11 + GetTDData-1.6.0/GetTDData/R/download_td_file.R | 68 +++++++++- GetTDData-1.6.0/GetTDData/R/gtdd_get_yield_curve.R | 58 +++----- GetTDData-1.6.0/GetTDData/R/read_td_file.R | 12 + GetTDData-1.6.0/GetTDData/R/td_get.R | 59 +++++--- GetTDData-1.6.0/GetTDData/R/td_get_current.R | 6 GetTDData-1.6.0/GetTDData/R/utils.R | 13 - GetTDData-1.6.0/GetTDData/README.md | 53 +------ GetTDData-1.6.0/GetTDData/man/figures/README-plot.prices-1.png |binary GetTDData-1.6.0/GetTDData/man/get_cache_folder.Rd | 6 GetTDData-1.6.0/GetTDData/man/get_td_names.Rd | 6 GetTDData-1.6.0/GetTDData/man/get_yield_curve.Rd |only GetTDData-1.6.0/GetTDData/man/td_get.Rd | 29 ++-- GetTDData-1.6.0/GetTDData/man/td_get_current.Rd | 6 GetTDData-1.6.0/GetTDData/tests/testthat/test-importing-data.R | 2 GetTDData-1.6.0/GetTDData/tests/testthat/test-yc.R | 9 - 20 files changed, 224 insertions(+), 163 deletions(-)
Title: Datasets and Utilities for Essentials of Statistics for the
Behavioral Sciences
Description: Provides instructional datasets and simple wrapper functions
for selected analyses used in 'Essentials of Statistics for the
Behavioral Sciences' (Gravetter et al., 2026).
The package is intended to support textbook examples by distributing
data in a form that is easy for students and instructors to access
within R. Current functionality includes packaged datasets and
convenience wrappers for functions from 'ez', 'pwr', and 'WebPower'
for analysis of variance and statistical power calculations.
Author: James Witnauer [aut, cre]
Maintainer: James Witnauer <jwitnaue@brockport.edu>
Diff between essentialstools versions 0.1.6 dated 2026-06-02 and 0.1.7 dated 2026-06-04
DESCRIPTION | 6 +++--- MD5 | 5 ++++- R/SearchData.R |only data/SearchData.rda |only man/SearchData.Rd |only 5 files changed, 7 insertions(+), 4 deletions(-)
More information about essentialstools at CRAN
Permanent link
Title: Clustering of Datasets
Description: Hierarchical and partitioning algorithms to cluster blocks of variables. The partitioning algorithm includes an option called noise cluster to set aside atypical blocks of variables. Different thresholds per cluster can be sets. The CLUSTATIS method (for quantitative blocks) (Llobell, Cariou, Vigneau, Labenne & Qannari (2020) <doi:10.1016/j.foodqual.2018.05.013>, Llobell, Vigneau & Qannari (2019) <doi:10.1016/j.foodqual.2019.02.017>) and the CLUSCATA method (for Check-All-That-Apply data) (Llobell, Cariou, Vigneau, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2018.09.006>, Llobell, Giacalone, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2019.05.017>) are the core of this package. The CATATIS methods allows to compute some indices and tests to control the quality of CATA data (Llobell, Bonnet & Giacalone (2024) <doi:10.1111/joss.12941>) . Multivariate analysis and clustering of subjects for quantitative multiblock data, CATA, RA [...truncated...]
Author: Fabien Llobell [aut, cre] ,
Evelyne Vigneau [ctb] ,
Veronique Cariou [ctb] ,
El Mostafa Qannari [ctb]
Maintainer: Fabien Llobell <fabienllobellresearch@gmail.com>
Diff between ClustBlock versions 5.0.0 dated 2026-03-24 and 6.0.0 dated 2026-06-04
DESCRIPTION | 10 +++++----- MD5 | 12 +++++++----- NAMESPACE | 1 + NEWS | 4 ++-- R/mixclustatis.R |only inst/CITATION | 4 ++-- man/ClustBlock-package.Rd | 9 +++++++-- man/mixclustatis.Rd |only 8 files changed, 24 insertions(+), 16 deletions(-)
Title: Extending Nucleic Acid Melting Temperature Analysis from
Sequence-Level Computation to Genome-Wide Thermodynamic
Profiling
Description: Accurate calculation of nucleic acid melting temperature (Tm) is fundamental to many molecular biology applications, and this software scales Tm analysis from individual sequences to genome‑wide thermodynamic profiling. This package extends Tm analysis from simple sequence level computation to comprehensive genome-wide thermodynamic profiling. It takes multiple input formats including sequence strings, FASTA files, genomic coordinates. The implementation provides three Tm calculation methods: the Wallace rule (Thein & Wallace, 1986), empirical GC‑content formulas (Marmur, 1962; Schildkraut, 2010; Wetmur, 1991; Untergasser, 2012; von Ahsen, 2001), and nearest‑neighbor thermodynamics (Breslauer, 1986; Sugimoto, 1996; Allawi, 1998; SantaLucia, 2004; Freier, 1986; Xia, 1998; Chen, 2012; Bommarito, 2000; Turner, 2010; Sugimoto, 1995; Allawi, 1997; SantaLucia, 2005). Corrections are supported for salt ions (SantaLucia, 1996, 1998; Owczarzy, 2004, 2008) and for chemical conditions such as [...truncated...]
Author: Junhui Li [cre, aut] ,
Lihua Julie Zhu [aut]
Maintainer: Junhui Li <ljh.biostat@gmail.com>
Diff between TmCalculator versions 1.0.4 dated 2026-03-20 and 1.0.5 dated 2026-06-04
TmCalculator-1.0.4/TmCalculator/R/gc.R |only TmCalculator-1.0.4/TmCalculator/R/plot_tm_karyotype.R |only TmCalculator-1.0.4/TmCalculator/data/thermodynamic_gc_params.rda |only TmCalculator-1.0.4/TmCalculator/data/thermodynamic_nn_params.rda |only TmCalculator-1.0.4/TmCalculator/man/plot_tm_karyotype.Rd |only TmCalculator-1.0.5/TmCalculator/DESCRIPTION | 37 TmCalculator-1.0.5/TmCalculator/MD5 | 109 TmCalculator-1.0.5/TmCalculator/NAMESPACE | 83 TmCalculator-1.0.5/TmCalculator/R/GC.R |only TmCalculator-1.0.5/TmCalculator/R/chem_correct.R | 32 TmCalculator-1.0.5/TmCalculator/R/compare_groups.R |only TmCalculator-1.0.5/TmCalculator/R/coor_to_genomic_ranges.R |only TmCalculator-1.0.5/TmCalculator/R/ecoli_rep_hotspots.R |only TmCalculator-1.0.5/TmCalculator/R/integrate_granges.R |only TmCalculator-1.0.5/TmCalculator/R/make_genomiccoord.R |only TmCalculator-1.0.5/TmCalculator/R/plot_circos_genome.R |only TmCalculator-1.0.5/TmCalculator/R/plot_karyotype_genome.R |only TmCalculator-1.0.5/TmCalculator/R/plot_linear_genome.R |only TmCalculator-1.0.5/TmCalculator/R/plot_tm_genome_tracks.R | 789 ++- TmCalculator-1.0.5/TmCalculator/R/plot_tm_heatmap.R | 333 - TmCalculator-1.0.5/TmCalculator/R/plot_tm_interactive.R | 429 + TmCalculator-1.0.5/TmCalculator/R/plot_tm_linear.R |only TmCalculator-1.0.5/TmCalculator/R/salt_correction.R | 56 TmCalculator-1.0.5/TmCalculator/R/sysdata.rda |only TmCalculator-1.0.5/TmCalculator/R/thermodynamic_gc_params.R | 12 TmCalculator-1.0.5/TmCalculator/R/thermodynamic_nn_params.R | 293 + TmCalculator-1.0.5/TmCalculator/R/tm_calculate.R | 83 TmCalculator-1.0.5/TmCalculator/R/tm_gc.R | 116 TmCalculator-1.0.5/TmCalculator/R/tm_nn.R | 715 +- TmCalculator-1.0.5/TmCalculator/R/tm_wallace.R | 18 TmCalculator-1.0.5/TmCalculator/R/to_genomic_ranges.R | 78 TmCalculator-1.0.5/TmCalculator/R/utils.R | 137 TmCalculator-1.0.5/TmCalculator/R/zzz.R |only TmCalculator-1.0.5/TmCalculator/build/vignette.rds |binary TmCalculator-1.0.5/TmCalculator/data/ecoli_rep_hotspots.rda |only TmCalculator-1.0.5/TmCalculator/data/thermodynamic_nn_params.RData |binary TmCalculator-1.0.5/TmCalculator/inst/doc/TmCalculator.R | 172 TmCalculator-1.0.5/TmCalculator/inst/doc/TmCalculator.Rmd | 228 TmCalculator-1.0.5/TmCalculator/inst/doc/TmCalculator.html | 2409 +--------- TmCalculator-1.0.5/TmCalculator/inst/doc/genome_wide_tm_ecoli.R |only TmCalculator-1.0.5/TmCalculator/inst/doc/genome_wide_tm_ecoli.Rmd |only TmCalculator-1.0.5/TmCalculator/inst/doc/genome_wide_tm_ecoli.html |only TmCalculator-1.0.5/TmCalculator/man/TmCalculator-package.Rd | 9 TmCalculator-1.0.5/TmCalculator/man/chem_correct.Rd | 12 TmCalculator-1.0.5/TmCalculator/man/compare_groups.Rd |only TmCalculator-1.0.5/TmCalculator/man/complement_fast.Rd |only TmCalculator-1.0.5/TmCalculator/man/coor_to_genomic_ranges.Rd | 88 TmCalculator-1.0.5/TmCalculator/man/dot-filter_N_windows.Rd |only TmCalculator-1.0.5/TmCalculator/man/dot-find_N_bounds.Rd |only TmCalculator-1.0.5/TmCalculator/man/dot-get_bsgenome_from_pkg.Rd |only TmCalculator-1.0.5/TmCalculator/man/dot-getseq_preload_chr.Rd |only TmCalculator-1.0.5/TmCalculator/man/dot-getseq_vectorized.Rd |only TmCalculator-1.0.5/TmCalculator/man/dot-load_genome_packages.Rd |only TmCalculator-1.0.5/TmCalculator/man/dot-normalize_tm_gc_metadata.Rd |only TmCalculator-1.0.5/TmCalculator/man/dot-parse_coord_strings.Rd |only TmCalculator-1.0.5/TmCalculator/man/ecoli_rep_hotspots.Rd |only TmCalculator-1.0.5/TmCalculator/man/gc.Rd | 2 TmCalculator-1.0.5/TmCalculator/man/integrate_granges.Rd |only TmCalculator-1.0.5/TmCalculator/man/make_genomiccoord.Rd |only TmCalculator-1.0.5/TmCalculator/man/plot_circos_genome.Rd |only TmCalculator-1.0.5/TmCalculator/man/plot_karyotype_genome.Rd |only TmCalculator-1.0.5/TmCalculator/man/plot_linear_genome.Rd |only TmCalculator-1.0.5/TmCalculator/man/plot_tm_genome_tracks.Rd | 171 TmCalculator-1.0.5/TmCalculator/man/plot_tm_heatmap.Rd | 71 TmCalculator-1.0.5/TmCalculator/man/plot_tm_interactive.Rd | 64 TmCalculator-1.0.5/TmCalculator/man/plot_tm_linear.Rd |only TmCalculator-1.0.5/TmCalculator/man/thermodynamic_gc_params.Rd | 12 TmCalculator-1.0.5/TmCalculator/man/thermodynamic_nn_params.Rd | 130 TmCalculator-1.0.5/TmCalculator/man/tm_calculate.Rd | 43 TmCalculator-1.0.5/TmCalculator/man/tm_gc.Rd | 35 TmCalculator-1.0.5/TmCalculator/man/tm_nn.Rd | 15 TmCalculator-1.0.5/TmCalculator/man/to_genomic_ranges.Rd | 35 TmCalculator-1.0.5/TmCalculator/tests/testthat/test_tm_calculate.R | 8 TmCalculator-1.0.5/TmCalculator/vignettes/TmCalculator.Rmd | 228 TmCalculator-1.0.5/TmCalculator/vignettes/genome_wide_tm_ecoli.Rmd |only 75 files changed, 3402 insertions(+), 3650 deletions(-)
Title: Create Ternary and Holdridge Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) and
Holdridge life zone plots <doi:10.1126/science.105.2727.367> using the
standard graphics functions.
Allows custom annotation, interpolating, contouring and scaling of plotting
region.
Includes a 'Shiny' user interface for point-and-click ternary plotting.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Author: Martin R. Smith [aut, cre, cph] ,
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 2.3.6 dated 2026-02-03 and 2.3.7 dated 2026-06-04
DESCRIPTION | 10 MD5 | 83 - NAMESPACE | 3 NEWS.md | 6 R/Annotate.R | 4 R/Contours.R | 1934 +++++++++++++++++++------------------- R/Coordinates.R | 10 R/TernaryPlot.R | 958 +++++++++--------- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 98 - inst/doc/Holdridge.html | 6 inst/doc/Ternary.html | 24 inst/doc/annotation.html | 8 inst/doc/interpolation.html | 10 inst/doc/new-users.html | 18 man/AddToTernary.Rd | 6 man/ColourTernary.Rd | 12 man/CoordinatesToXY.Rd | 74 - man/HoldridgeHypsometricCol.Rd | 106 +- man/HoldridgePlot.Rd | 580 +++++------ man/OutsidePlot.Rd | 90 - man/ReflectedEquivalents.Rd | 96 - man/Ternary-package.Rd | 89 - man/TernaryContour.Rd | 8 man/TernaryCoords.Rd | 207 ++-- man/TernaryDensityContour.Rd | 8 man/TernaryPointValues.Rd | 8 man/TernaryTiles.Rd | 120 +- man/TernaryXRange.Rd | 84 - man/TriangleCentres.Rd | 12 man/TriangleInHull.Rd | 4 man/XYToTernary.Rd | 108 +- man/holdridge.Rd | 64 - man/holdridgeClasses.Rd | 134 +- tests/testthat/Rplots.pdf |binary tests/testthat/helper.R |only tests/testthat/test-Annotate.R | 7 tests/testthat/test-Contours.R | 17 tests/testthat/test-Coordinates.R | 12 tests/testthat/test-Holdridge.R | 3 tests/testthat/test-axis-rotate.R | 176 +-- tests/testthat/test-ternary.R | 576 +++++------ 43 files changed, 2907 insertions(+), 2866 deletions(-)
Title: Filter Module for 'teal' Applications
Description: Data filtering module for 'teal' applications. Allows for
interactive filtering of data stored in 'data.frame' and
'MultiAssayExperiment' objects. Also displays filtered and unfiltered
observation counts.
Author: Dawid Kaledkowski [aut] ,
Pawel Rucki [aut],
Aleksander Chlebowski [aut] ,
Andre Verissimo [aut] ,
Lluis Revilla Sancho [aut] ,
Dony Unardi [rev, cre],
Kartikeya Kirar [aut],
Marcin Kosinski [aut],
Chendi Liao [aut],
Andrew Bates [aut],
Mahmoud Halla [...truncated...]
Maintainer: Dony Unardi <unardid@gene.com>
Diff between teal.slice versions 0.7.1 dated 2025-12-02 and 0.8.0 dated 2026-06-04
DESCRIPTION | 28 MD5 | 82 - NEWS.md | 12 R/FilterStateChoices.R | 24 R/FilterStateRange.R | 39 R/teal_slices.R | 8 README.md | 14 build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/teal-slice-classes.html | 22 inst/doc/teal-slice.html | 2 man/ChoicesFilterState.Rd | 139 +- man/DFFilterStates.Rd | 112 - man/DataframeFilteredDataset.Rd | 288 ++-- man/DateFilterState.Rd | 139 +- man/DatetimeFilterState.Rd | 139 +- man/DefaultFilteredDataset.Rd | 358 ++--- man/EmptyFilterState.Rd | 139 +- man/FilterPanelAPI.Rd | 196 +-- man/FilterState.Rd | 306 ++-- man/FilterStateExpr.Rd | 323 ++--- man/FilterStates.Rd | 472 +++---- man/FilteredData.Rd | 879 +++++++------- man/FilteredDataset.Rd | 552 ++++---- man/LogicalFilterState.Rd | 139 +- man/MAEFilterStates.Rd | 115 - man/MAEFilteredDataset.Rd | 245 +-- man/MatrixFilterStates.Rd | 109 - man/RangeFilterState.Rd | 159 +- man/SEFilterStates.Rd | 211 +-- man/dot-drop_levels_keep_label.Rd |only man/teal.slice-package.Rd | 7 tests/testthat/helpers-shinytest2.R | 89 + tests/testthat/test-ChoicesFilterState.R | 88 + tests/testthat/test-DatetimeFilterState.R | 159 ++ tests/testthat/test-DefaultFilteredDataset.R | 14 tests/testthat/test-EmptyFilterState.R | 57 tests/testthat/test-FilteredData-utils.R |only tests/testthat/test-FilteredData.R | 47 tests/testthat/test-LogicalFilterState.R | 186 ++ tests/testthat/test-RangeFilterState.R | 112 + tests/testthat/test-shinytest2_DataframeFilteredDataset.R | 26 tests/testthat/test-teal_slices.R | 21 43 files changed, 3486 insertions(+), 2573 deletions(-)
Title: Formula-Driven Table Generation
Description: Computes and displays complex tables of summary statistics.
Output may be in LaTeX, HTML, plain text, or an R
matrix for further processing.
Author: Duncan Murdoch [aut, cre]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between tables versions 0.9.33 dated 2025-12-15 and 0.9.35 dated 2026-06-04
DESCRIPTION | 6 MD5 | 26 ++-- NEWS.md | 3 build/vignette.rds |binary inst/doc/HTML.html | 282 ++++++++++++++++++++++----------------------- inst/doc/knitrTables.R | 12 - inst/doc/knitrTables.Rmd | 6 inst/doc/knitrTables.pdf |binary inst/doc/tables.R | 128 ++++++++++---------- inst/doc/tables.Rnw | 6 inst/doc/tables.pdf |binary vignettes/knitrTables.Rmd | 6 vignettes/tables.Rnw | 6 vignettes/tables.Rout.save | 20 --- 14 files changed, 247 insertions(+), 254 deletions(-)
Title: Stepwise Regression Analysis
Description: Stepwise regression is a statistical technique used for model selection. This package streamlines stepwise regression analysis by supporting multiple regression types(linear, Cox, logistic, Poisson, Gamma, and negative binomial), incorporating popular selection strategies(forward, backward, bidirectional, and subset), and offering essential metrics. It enables users to apply multiple selection strategies and metrics in a single function call, visualize variable selection processes, and export results in various formats. StepReg offers a data-splitting option to address potential issues with invalid statistical inference and a randomized forward selection option to avoid overfitting. We validated StepReg's accuracy using public datasets within the SAS software environment. For an interactive web interface, users can install the companion 'StepRegShiny' package.
Author: Junhui Li [cre] ,
Junhui Li [aut],
Kai Hu [aut],
Xiaohuan Lu [aut],
Sushmita N Nayak [ctb],
Cesar Bautista Sotelo [ctb],
Michael A Lodato [ctb],
Wenxin Liu [aut],
Lihua Julie Zhu [aut]
Maintainer: Junhui Li <junhui.li11@umassmed.edu>
Diff between StepReg versions 1.6.5 dated 2026-05-21 and 1.6.6 dated 2026-06-04
DESCRIPTION | 14 ++++++++++---- MD5 | 14 +++++++------- R/remission.R | 1 - inst/doc/StepReg.Rmd | 2 +- inst/doc/StepReg.html | 30 +++++++++++++++--------------- man/StepReg-package.Rd | 7 +++++++ man/remission.Rd | 1 - vignettes/StepReg.Rmd | 2 +- 8 files changed, 41 insertions(+), 30 deletions(-)
Title: Open Source Diabetes Classifier for Danish Registers
Description: The algorithm first identifies a population of individuals from
Danish register data with any type of diabetes as individuals with two or
more inclusion events. Then, it splits this population into individuals with
either type 1 diabetes or type 2 diabetes by identifying individuals with
type 1 diabetes and classifying the remainder of the diabetes population as
having type 2 diabetes.
Author: Signe Kirk Broedbaek [aut] ,
Anders Aasted Isaksen [aut] ,
Luke William Johnston [aut, cre] ,
Steno Diabetes Center Aarhus [cph],
Aarhus University [cph]
Maintainer: Luke William Johnston <lwjohnst@gmail.com>
Diff between osdc versions 0.9.19 dated 2026-01-12 and 0.11.3 dated 2026-06-04
osdc-0.11.3/osdc/DESCRIPTION | 19 osdc-0.11.3/osdc/MD5 | 164 osdc-0.11.3/osdc/NAMESPACE | 4 osdc-0.11.3/osdc/NEWS.md | 188 osdc-0.11.3/osdc/R/add.R | 8 osdc-0.11.3/osdc/R/algorithm.R | 54 osdc-0.11.3/osdc/R/classify-diabetes.R | 113 osdc-0.11.3/osdc/R/create-inclusion-dates.R | 32 osdc-0.11.3/osdc/R/drop.R | 36 osdc-0.11.3/osdc/R/edge-cases.R | 118 osdc-0.11.3/osdc/R/get-variables.R | 13 osdc-0.11.3/osdc/R/join.R |only osdc-0.11.3/osdc/R/keep.R | 167 osdc-0.11.3/osdc/R/non-cases.R | 57 osdc-0.11.3/osdc/R/osdc-package.R | 9 osdc-0.11.3/osdc/R/prepare-lpr.R | 82 osdc-0.11.3/osdc/R/registers.R | 109 osdc-0.11.3/osdc/R/select.R | 12 osdc-0.11.3/osdc/R/simulate-registers.R | 70 osdc-0.11.3/osdc/R/sysdata.rda |binary osdc-0.11.3/osdc/README.md | 2 osdc-0.11.3/osdc/build/vignette.rds |binary osdc-0.11.3/osdc/inst/WORDLIST | 38 osdc-0.11.3/osdc/inst/doc/algorithm.R | 40 osdc-0.11.3/osdc/inst/doc/algorithm.html | 76 osdc-0.11.3/osdc/inst/doc/algorithm.qmd | 123 osdc-0.11.3/osdc/inst/doc/changes.qmd | 84 osdc-0.11.3/osdc/inst/doc/data-sources.html | 170 osdc-0.11.3/osdc/inst/doc/data-sources.qmd | 5 osdc-0.11.3/osdc/inst/doc/design.R | 25 osdc-0.11.3/osdc/inst/doc/design.html | 2979 +++++++++- osdc-0.11.3/osdc/inst/doc/design.qmd | 311 - osdc-0.11.3/osdc/inst/doc/function-flow.html | 2 osdc-0.11.3/osdc/inst/doc/function-flow.qmd | 38 osdc-0.11.3/osdc/inst/doc/osdc.R | 64 osdc-0.11.3/osdc/inst/doc/osdc.html | 400 - osdc-0.11.3/osdc/inst/doc/osdc.qmd | 369 - osdc-0.11.3/osdc/inst/doc/rationale.html | 2 osdc-0.11.3/osdc/inst/doc/rationale.qmd | 69 osdc-0.11.3/osdc/man/classify_diabetes.Rd | 46 osdc-0.11.3/osdc/man/edge_cases.Rd | 3 osdc-0.11.3/osdc/man/join_registers.Rd |only osdc-0.11.3/osdc/man/non_cases.Rd | 2 osdc-0.11.3/osdc/man/osdc-package.Rd | 1 osdc-0.11.3/osdc/man/prepare_lpr2.Rd | 4 osdc-0.11.3/osdc/man/prepare_lpr3a.Rd |only osdc-0.11.3/osdc/man/prepare_lpr3f.Rd |only osdc-0.11.3/osdc/man/registers.Rd | 6 osdc-0.11.3/osdc/man/simulate_registers.Rd | 1 osdc-0.11.3/osdc/tests/testthat/test-classify-as-duckdb.R | 4 osdc-0.11.3/osdc/tests/testthat/test-classify-diabetes.R | 45 osdc-0.11.3/osdc/tests/testthat/test-classify-variable-casing.R | 17 osdc-0.11.3/osdc/tests/testthat/test-select-required-variables.R | 25 osdc-0.11.3/osdc/tests/testthat/test-yyww-to-yyyymmdd.R | 29 osdc-0.11.3/osdc/vignettes/algorithm.qmd | 123 osdc-0.11.3/osdc/vignettes/changes.qmd | 84 osdc-0.11.3/osdc/vignettes/data-sources.qmd | 5 osdc-0.11.3/osdc/vignettes/design.qmd | 311 - osdc-0.11.3/osdc/vignettes/function-flow.qmd | 38 osdc-0.11.3/osdc/vignettes/images/function-flow.svg | 2 osdc-0.11.3/osdc/vignettes/images/overview-flow.mmd | 2 osdc-0.11.3/osdc/vignettes/images/overview-flow.svg | 2 osdc-0.11.3/osdc/vignettes/osdc.qmd | 369 - osdc-0.11.3/osdc/vignettes/rationale.qmd | 69 osdc-0.9.19/osdc/R/dates.R |only osdc-0.9.19/osdc/R/join-inclusions.R |only osdc-0.9.19/osdc/man/add_insulin_purchases_cols.Rd |only osdc-0.9.19/osdc/man/add_t1d_diagnoses_cols.Rd |only osdc-0.9.19/osdc/man/as_sql_datetime.Rd |only osdc-0.9.19/osdc/man/check_data_types.Rd |only osdc-0.9.19/osdc/man/classify_t1d.Rd |only osdc-0.9.19/osdc/man/column_names_to_lower.Rd |only osdc-0.9.19/osdc/man/create_fake_atc.Rd |only osdc-0.9.19/osdc/man/create_fake_date.Rd |only osdc-0.9.19/osdc/man/create_fake_hovedspeciale_ans.Rd |only osdc-0.9.19/osdc/man/create_fake_icd.Rd |only osdc-0.9.19/osdc/man/create_fake_icd10.Rd |only osdc-0.9.19/osdc/man/create_fake_icd8.Rd |only osdc-0.9.19/osdc/man/create_fake_npu.Rd |only osdc-0.9.19/osdc/man/create_inclusion_dates.Rd |only osdc-0.9.19/osdc/man/create_padded_integer.Rd |only osdc-0.9.19/osdc/man/create_simulated_data.Rd |only osdc-0.9.19/osdc/man/drop_pcos.Rd |only osdc-0.9.19/osdc/man/drop_pregnancies.Rd |only osdc-0.9.19/osdc/man/fct_to_chr.Rd |only osdc-0.9.19/osdc/man/get_algorithm_logic.Rd |only osdc-0.9.19/osdc/man/get_register_abbrev.Rd |only osdc-0.9.19/osdc/man/get_required_variables.Rd |only osdc-0.9.19/osdc/man/insert_analysiscode.Rd |only osdc-0.9.19/osdc/man/insert_false_metformin.Rd |only osdc-0.9.19/osdc/man/insert_specific_atc.Rd |only osdc-0.9.19/osdc/man/insertion_rate.Rd |only osdc-0.9.19/osdc/man/join_inclusions.Rd |only osdc-0.9.19/osdc/man/keep_diabetes_diagnoses.Rd |only osdc-0.9.19/osdc/man/keep_gld_purchases.Rd |only osdc-0.9.19/osdc/man/keep_hba1c.Rd |only osdc-0.9.19/osdc/man/keep_podiatrist_services.Rd |only osdc-0.9.19/osdc/man/keep_pregnancy_dates.Rd |only osdc-0.9.19/osdc/man/keep_two_earliest_events.Rd |only osdc-0.9.19/osdc/man/logic_as_expression.Rd |only osdc-0.9.19/osdc/man/pad_integers.Rd |only osdc-0.9.19/osdc/man/prepare_lpr3.Rd |only osdc-0.9.19/osdc/man/select_required_variables.Rd |only osdc-0.9.19/osdc/man/to_yyww.Rd |only osdc-0.9.19/osdc/man/to_yyyymmdd.Rd |only osdc-0.9.19/osdc/man/yyww_to_yyyymmdd.Rd |only 106 files changed, 5629 insertions(+), 1611 deletions(-)
Title: 'Material UI' for 'shiny' Apps and 'Quarto'
Description: Wraps the 'Material UI' React components <https://mui.com/> for use in R, 'shiny'
applications and 'quarto' documents, including inputs, layouts, navigation, and
surfaces. All inputs come with R usage examples.
Author: Felix Luginbuhl [aut, cre, cph] ,
MUI [cph] ,
Emotion team [cph] ,
Meta Platforms, Inc. and affiliates [cph]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between muiMaterial versions 0.1.3 dated 2026-03-15 and 0.2.0 dated 2026-06-04
muiMaterial-0.1.3/muiMaterial/inst/examples/dashboard-simple/app-static.R |only muiMaterial-0.1.3/muiMaterial/inst/examples/dashboard-simple/manifest.json |only muiMaterial-0.1.3/muiMaterial/inst/examples/dashboard-simple/navbar-icons-tooltips.R |only muiMaterial-0.1.3/muiMaterial/inst/examples/mui-template-dashboard/manifest.json |only muiMaterial-0.1.3/muiMaterial/inst/examples/showcase/manifest.json |only muiMaterial-0.1.3/muiMaterial/inst/examples/showcase/www |only muiMaterial-0.1.3/muiMaterial/man/GridLegacy.Rd |only muiMaterial-0.1.3/muiMaterial/man/PigmentContainer.Rd |only muiMaterial-0.1.3/muiMaterial/man/PigmentGrid.Rd |only muiMaterial-0.1.3/muiMaterial/man/PigmentStack.Rd |only muiMaterial-0.1.3/muiMaterial/tests/testthat/test-GridLegacy.R |only muiMaterial-0.1.3/muiMaterial/tests/testthat/test-PigmentContainer.R |only muiMaterial-0.1.3/muiMaterial/tests/testthat/test-PigmentGrid.R |only muiMaterial-0.1.3/muiMaterial/tests/testthat/test-PigmentStack.R |only muiMaterial-0.2.0/muiMaterial/DESCRIPTION | 50 muiMaterial-0.2.0/muiMaterial/LICENSE.note |only muiMaterial-0.2.0/muiMaterial/MD5 | 487 ++++--- muiMaterial-0.2.0/muiMaterial/NAMESPACE | 31 muiMaterial-0.2.0/muiMaterial/NEWS.md | 87 + muiMaterial-0.2.0/muiMaterial/R/ThemeProvider.R | 53 muiMaterial-0.2.0/muiMaterial/R/aaa-utils.R |only muiMaterial-0.2.0/muiMaterial/R/components-extra.R |only muiMaterial-0.2.0/muiMaterial/R/components.R | 56 muiMaterial-0.2.0/muiMaterial/R/docs-templates.R | 8 muiMaterial-0.2.0/muiMaterial/R/documentation.R | 110 - muiMaterial-0.2.0/muiMaterial/R/inputs.R | 287 ++++ muiMaterial-0.2.0/muiMaterial/R/muiMaterial-package.R |only muiMaterial-0.2.0/muiMaterial/R/muiMaterialDependency.R | 28 muiMaterial-0.2.0/muiMaterial/R/muiMaterialExample.R | 17 muiMaterial-0.2.0/muiMaterial/R/muiMaterialPage.R | 125 +- muiMaterial-0.2.0/muiMaterial/R/static-tabs.R |only muiMaterial-0.2.0/muiMaterial/R/triggerId.R | 112 + muiMaterial-0.2.0/muiMaterial/README.md | 165 +- muiMaterial-0.2.0/muiMaterial/inst/examples/Autocomplete.R | 80 - muiMaterial-0.2.0/muiMaterial/inst/examples/BottomNavigation.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/Button.R | 87 - muiMaterial-0.2.0/muiMaterial/inst/examples/ButtonGroup.R | 58 muiMaterial-0.2.0/muiMaterial/inst/examples/Card.R | 3 muiMaterial-0.2.0/muiMaterial/inst/examples/Checkbox.R | 19 muiMaterial-0.2.0/muiMaterial/inst/examples/CustomComponentShinyInput.R | 8 muiMaterial-0.2.0/muiMaterial/inst/examples/CustomComponentShinyInputStyled.R | 25 muiMaterial-0.2.0/muiMaterial/inst/examples/Dialog.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/Drawer.R | 3 muiMaterial-0.2.0/muiMaterial/inst/examples/DrawerTriggerId.R | 1 muiMaterial-0.2.0/muiMaterial/inst/examples/Fab.R | 17 muiMaterial-0.2.0/muiMaterial/inst/examples/FilledInput.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/Grid.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/LoadingButton.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/Menu.R | 15 muiMaterial-0.2.0/muiMaterial/inst/examples/MenuItem.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/Modal.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/NativeSelect.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/Pagination.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/RadioGroup.R | 62 muiMaterial-0.2.0/muiMaterial/inst/examples/Rating.R | 5 muiMaterial-0.2.0/muiMaterial/inst/examples/Slider.R | 10 muiMaterial-0.2.0/muiMaterial/inst/examples/Snackbar.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/Stepper.R | 33 muiMaterial-0.2.0/muiMaterial/inst/examples/Switch.R | 5 muiMaterial-0.2.0/muiMaterial/inst/examples/Tabs.R | 43 muiMaterial-0.2.0/muiMaterial/inst/examples/TextField.R | 125 -- muiMaterial-0.2.0/muiMaterial/inst/examples/ThemeProvider.R | 21 muiMaterial-0.2.0/muiMaterial/inst/examples/Timeline.R | 5 muiMaterial-0.2.0/muiMaterial/inst/examples/ToggleButtonGroup.R | 22 muiMaterial-0.2.0/muiMaterial/inst/examples/TransferList.R | 131 +- muiMaterial-0.2.0/muiMaterial/inst/examples/bookmarking.R | 25 muiMaterial-0.2.0/muiMaterial/inst/examples/dashboard-icons |only muiMaterial-0.2.0/muiMaterial/inst/examples/dashboard-inset |only muiMaterial-0.2.0/muiMaterial/inst/examples/dashboard-simple/app.R | 359 ++--- muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/app.R | 297 ++-- muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/fct_ChartUserByCountry.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/fct_HighlightedCard.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/fct_MainGrid.R | 147 ++ muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/fct_PageViewsBarChart.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/fct_SessionsChart.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/fct_StatCard.R |only muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_AppNavbar.R | 1 muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_Header.R | 9 muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_MenuButton.R | 52 muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_MenuContent.R | 39 muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_NavbarBreadcrumbs.R | 3 muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_OptionsMenu.R | 131 -- muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_SelectContent.R | 183 +- muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_SideMenu.R | 12 muiMaterial-0.2.0/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_SideMenuMobile.R | 141 +- muiMaterial-0.2.0/muiMaterial/inst/examples/muiMaterialPage.R | 1 muiMaterial-0.2.0/muiMaterial/inst/examples/showcase/app.R | 510 ++++---- muiMaterial-0.2.0/muiMaterial/inst/www/muiMaterial/mui-material.js | 468 ++----- muiMaterial-0.2.0/muiMaterial/inst/www/muiMaterial/mui-material.js.LICENSE.txt | 623 +++++++++- muiMaterial-0.2.0/muiMaterial/man/Autocomplete.Rd | 36 muiMaterial-0.2.0/muiMaterial/man/BottomNavigation.Rd | 24 muiMaterial-0.2.0/muiMaterial/man/Button.Rd | 17 muiMaterial-0.2.0/muiMaterial/man/Dialog.Rd | 25 muiMaterial-0.2.0/muiMaterial/man/Dialog.triggerId.Rd |only muiMaterial-0.2.0/muiMaterial/man/Drawer.Rd | 8 muiMaterial-0.2.0/muiMaterial/man/Drawer.triggerId.Rd | 20 muiMaterial-0.2.0/muiMaterial/man/FilledInput.Rd | 18 muiMaterial-0.2.0/muiMaterial/man/LoadingButton.Rd |only muiMaterial-0.2.0/muiMaterial/man/Menu.Rd | 9 muiMaterial-0.2.0/muiMaterial/man/Menu.triggerId.Rd | 9 muiMaterial-0.2.0/muiMaterial/man/MenuItem.Rd | 16 muiMaterial-0.2.0/muiMaterial/man/Modal.Rd | 24 muiMaterial-0.2.0/muiMaterial/man/Modal.triggerId.Rd |only muiMaterial-0.2.0/muiMaterial/man/NativeSelect.Rd | 18 muiMaterial-0.2.0/muiMaterial/man/Pagination.Rd | 18 muiMaterial-0.2.0/muiMaterial/man/Popover.triggerId.Rd |only muiMaterial-0.2.0/muiMaterial/man/Radio.Rd | 9 muiMaterial-0.2.0/muiMaterial/man/Slider.Rd | 17 muiMaterial-0.2.0/muiMaterial/man/Snackbar.Rd | 24 muiMaterial-0.2.0/muiMaterial/man/SwipeableDrawer.triggerId.Rd | 41 muiMaterial-0.2.0/muiMaterial/man/Tab.Rd | 14 muiMaterial-0.2.0/muiMaterial/man/TabContext.Rd | 43 muiMaterial-0.2.0/muiMaterial/man/TabList.Rd | 13 muiMaterial-0.2.0/muiMaterial/man/TabPanel.Rd | 17 muiMaterial-0.2.0/muiMaterial/man/Tabs.Rd | 6 muiMaterial-0.2.0/muiMaterial/man/TextField.Rd | 17 muiMaterial-0.2.0/muiMaterial/man/ThemeProvider.Rd | 29 muiMaterial-0.2.0/muiMaterial/man/Timeline.Rd | 6 muiMaterial-0.2.0/muiMaterial/man/muiMaterial-package.Rd |only muiMaterial-0.2.0/muiMaterial/man/muiMaterialDependency.Rd | 4 muiMaterial-0.2.0/muiMaterial/man/muiMaterialExample.Rd | 13 muiMaterial-0.2.0/muiMaterial/man/muiMaterialPage.Rd | 26 muiMaterial-0.2.0/muiMaterial/man/shinyInput.Rd | 10 muiMaterial-0.2.0/muiMaterial/tests/testthat/helper-react.R |only muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Accordion.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-AccordionActions.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-AccordionDetails.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-AccordionSummary.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Alert.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-AlertTitle.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-AppBar.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Autocomplete.R | 56 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Avatar.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-AvatarGroup.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Backdrop.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Badge.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-BottomNavigation.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-BottomNavigationAction.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Box.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Breadcrumbs.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Button.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ButtonBase.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ButtonGroup.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Card.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-CardActionArea.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-CardActions.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-CardContent.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-CardHeader.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-CardMedia.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Checkbox.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Chip.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-CircularProgress.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ClickAwayListener.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Collapse.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Container.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-CssBaseline.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Dialog.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-DialogActions.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-DialogContent.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-DialogContentText.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-DialogTitle.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Divider.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Drawer.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Fab.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Fade.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-FilledInput.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-FormControl.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-FormControlLabel.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-FormGroup.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-FormHelperText.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-FormLabel.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-GlobalStyles.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Grid.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Grow.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Icon.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-IconButton.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ImageList.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ImageListItem.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ImageListItemBar.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Input.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-InputAdornment.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-InputBase.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-InputLabel.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-LinearProgress.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Link.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-List.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ListItem.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ListItemAvatar.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ListItemButton.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ListItemIcon.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ListItemSecondaryAction.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ListItemText.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ListSubheader.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Masonry.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Menu.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-MenuItem.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-MenuList.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-MobileStepper.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Modal.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-NativeSelect.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-NoSsr.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-OutlinedInput.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Pagination.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-PaginationItem.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Paper.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Popover.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Popper.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Portal.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Radio.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-RadioGroup.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Rating.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ScopedCssBaseline.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Select.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Skeleton.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Slide.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Slider.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Snackbar.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-SnackbarContent.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-SpeedDial.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-SpeedDialAction.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-SpeedDialIcon.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Stack.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Step.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-StepButton.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-StepConnector.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-StepContent.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-StepIcon.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-StepLabel.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Stepper.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-SvgIcon.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-SwipeableDrawer.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Switch.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Tab.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TabContext.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TabList.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TabPanel.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TabScrollButton.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Table.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TableBody.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TableCell.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TableContainer.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TableFooter.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TableHead.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TablePagination.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TableRow.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TableSortLabel.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Tabs.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TextField.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TextareaAutosize.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ThemeProvider.R |only muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Timeline.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TimelineConnector.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TimelineContent.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TimelineDot.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TimelineItem.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TimelineOppositeContent.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-TimelineSeparator.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ToggleButton.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-ToggleButtonGroup.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Toolbar.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Tooltip.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Typography.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-Zoom.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-components.R | 4 muiMaterial-0.2.0/muiMaterial/tests/testthat/test-muiMaterialPage.R |only muiMaterial-0.2.0/muiMaterial/tests/testthat/test-shinyInput-factories.R |only muiMaterial-0.2.0/muiMaterial/tests/testthat/test-static-tabs.R |only muiMaterial-0.2.0/muiMaterial/tests/testthat/test-triggerId.R |only 268 files changed, 3978 insertions(+), 2556 deletions(-)
Title: The MBESS R Package
Description: Implements methods that are useful in designing research studies and analyzing data, with
particular emphasis on methods that are developed for or used within the behavioral,
educational, and social sciences (broadly defined). That being said, many of the methods
implemented within MBESS are applicable to a wide variety of disciplines. MBESS has a
suite of functions for a variety of related topics, such as effect sizes, confidence intervals
for effect sizes (including standardized effect sizes and noncentral effect sizes), sample size
planning (from the accuracy in parameter estimation [AIPE], power analytic, equivalence, and
minimum-risk point estimation perspectives), mediation analysis, various properties of
distributions, and a variety of utility functions. MBESS (pronounced 'em-bes') was originally
an acronym for 'Methods for the Behavioral, Educational, and Social Sciences,' but MBESS became
more general and now contains methods applicable and used in a wide variety of fields and [...truncated...]
Author: Ken Kelley [aut, cre]
Maintainer: Ken Kelley <kkelley@nd.edu>
Diff between MBESS versions 5.0.0 dated 2026-06-01 and 5.0.1 dated 2026-06-04
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 26 ++++++++++++++++++++++++++ R/ss.aipe.pcm.R | 7 ++++--- man/MBESS-package.Rd | 4 ++-- man/ss.aipe.pcm.Rd | 8 ++++++-- 6 files changed, 47 insertions(+), 16 deletions(-)
Title: Handling HL7 FHIR® Resources in R
Description: Useful tools for conveniently downloading FHIR resources in xml format
and converting them to R data.frames. Uses FHIR-search to download bundles
from a FHIR server, provides functions to save and read xml-files containing such bundles
and allows flattening the bundles to data.frames using XPath expressions. FHIR® is the registered trademark
of HL7 and is used with the permission of HL7. Use of the FHIR trademark does not constitute endorsement of this product by HL7.
Author: Thomas Peschel [aut],
Julia Palm [aut, cre] ,
Jens Przybilla [aut],
Frank Meineke [aut]
Maintainer: Julia Palm <julia.palm@med.uni-jena.de>
Diff between fhircrackr versions 2.3.0 dated 2025-04-07 and 2.4.0 dated 2026-06-04
DESCRIPTION | 14 - MD5 | 22 +- NEWS.md | 6 R/miscellaneous.R | 3 R/multiple_entries.R | 347 +++++++++++++++++++++++++++++------- inst/doc/downloadResources.html | 4 inst/doc/fhircrackr_intro.html | 4 inst/doc/flattenResources.html | 4 inst/doc/recreateResources.html | 4 tests/testthat/test_fhir_collapse.R | 4 tests/testthat/test_fhir_melt.R | 52 +++++ tests/testthat/test_fhir_melt_all.R | 107 +++++++++++ 12 files changed, 479 insertions(+), 92 deletions(-)
Title: Penalized Likelihood Factor Analysis via Nonconvex Penalty
Description: Computes the penalized maximum likelihood estimates of factor loadings and unique variances for various tuning parameters. The pathwise coordinate descent along with EM algorithm is used. This package also includes a new graphical tool which outputs path diagram, goodness-of-fit indices and model selection criteria for each regularization parameter (Yamamoto, M., Hirose, K. and Nagata, H., 2017 <doi:10.1007/s41237-016-0007-3>). The user can change the regularization parameter by manipulating scrollbars, which is helpful to find a suitable value of regularization parameter. As a penalty, we can choose either the minimax concave penalty (Hirose, K. and Yamamoto, M., 2015 <doi:10.1007/s11222-014-9458-0>; Hirose, K. and Yamamoto, M., 2014 <doi:10.1016/j.csda.2014.05.011>) or the product-based elastic net penalty (Hirose, K. and Terada, Y., 2023 <doi:10.1007/s11336-022-09868-4>).
Author: Kei Hirose [aut, cre] ,
Michio Yamamoto [aut],
Haruhisa Nagata [aut]
Maintainer: Kei Hirose <mail@keihirose.com>
This is a re-admission after prior archival of version 2.3.11 dated 2024-01-14
Diff between fanc versions 2.3.11 dated 2024-01-14 and 2.3.13 dated 2026-06-04
DESCRIPTION | 13 ++++----- MD5 | 8 ++--- man/fanc.Rd | 8 ++--- src/fanc.c | 63 +++++++++++++++++++++++++------------------- src/registerDynamicSymbol.c | 15 +++++++--- 5 files changed, 62 insertions(+), 45 deletions(-)
Title: Migrate Installed R Packages Between R Versions
Description: Detects all R installations on the current machine and migrates
installed R packages between them. Provides find_routes() to discover R
versions, manifest() to scan package libraries via 'subprocess', inventory()
to compare two libraries, and ship() to install packages into a target R
version using 'pak'. Includes a Shiny dashboard (open_hub()) for interactive
one-way and two-way migration.
Author: Lennon Li [aut, cre]
Maintainer: Lennon Li <yeli@biostats.ai>
Diff between courieR versions 0.2.0 dated 2026-05-30 and 0.2.2 dated 2026-06-04
DESCRIPTION | 15 MD5 | 89 +- NAMESPACE | 44 - NEWS.md | 38 R/courieR-package.R | 19 R/dispatch.R | 100 +- R/find_routes.R | 512 +++++------ R/inspect_shipment.R | 108 +- R/inventory.R | 272 +++--- R/manifest.R | 278 +++--- R/open_hub.R | 60 - R/rig.R | 84 - R/ship.R | 293 +++--- R/utils.R | 40 R/wrap.R | 73 - README.md | 198 ++-- build/vignette.rds |binary inst/WORDLIST | 18 inst/app/global.R | 52 - inst/app/modules/mod_error_reporter.R |only inst/app/modules/mod_migrate.R | 448 +++++----- inst/app/modules/mod_origin.R | 259 ++--- inst/app/modules/mod_sync.R | 1108 ++++++++++++------------- inst/app/modules/mod_update.R | 348 ++++--- inst/app/server.R | 155 +-- inst/app/ui.R | 57 - inst/app/www/styles.css | 1485 +++++++++++++++++----------------- inst/doc/get-started.R | 220 +++-- inst/doc/get-started.Rmd | 430 ++++++--- inst/doc/get-started.html | 1127 ++++++++++++++----------- inst/report_template.Rmd | 32 man/courieR-package.Rd | 56 - man/dispatch.Rd | 84 - man/find_routes.Rd | 157 +-- man/open_hub.Rd | 52 - man/rig_install.Rd | 48 - man/ship.Rd | 116 +- tests/testthat.R | 6 tests/testthat/DESCRIPTION | 6 tests/testthat/test-find_routes.R | 32 tests/testthat/test-inventory.R | 210 ++-- tests/testthat/test-manifest.R | 76 - tests/testthat/test-rig.R | 10 tests/testthat/test-ship.R | 146 +-- tests/testthat/test-wrap.R | 62 - vignettes/get-started.Rmd | 430 ++++++--- 46 files changed, 5065 insertions(+), 4388 deletions(-)
Title: Hidden Markov Models for Multivariate Panel Data
Description: Estimates hidden Markov models from the family of Cholesky-decomposed Gaussian hidden Markov models (CDGHMM) under various missingness schemes. This family improves upon estimation of traditional Gaussian HMMs by introducing parsimony, as well as, controlling for dropped out observations and non-random missingness. See Neal, Sochaniwsky and McNicholas (2024) <DOI:10.1007/s11222-024-10462-0>.
Author: Mackenzie R. Neal [aut, cre] ,
Alexa A. Sochaniwsky [aut],
Paul D. McNicholas [aut]
Maintainer: Mackenzie R. Neal <nealm6@mcmaster.ca>
Diff between CDGHMM versions 0.1.4 dated 2026-05-28 and 0.1.5 dated 2026-06-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/Support_functions.R | 12 +++++------- R/cdghmm.R | 2 +- 4 files changed, 13 insertions(+), 15 deletions(-)
Title: Analysis of Basketball Data
Description: Collection of tools to work with European basketball data. Functions available are related to friendly
web scraping, data management and visualization. Data were obtained from <https://www.euroleaguebasketball.net/euroleague/>,
<https://www.euroleaguebasketball.net/eurocup/> and <https://www.acb.com/>, following the instructions
of their respectives robots.txt files, when available. Box score data are available for the three leagues.
Play-by-play and spatial shooting data are also available for the Spanish league. Methods for analysis include a
population pyramid, 2D plots, circular plots of players' percentiles, plots of players' monthly/yearly stats,
team heatmaps, team shooting plots, team four factors plots, cross-tables with the results of regular season games,
maps of nationalities, combinations of lineups, possessions-related variables, timeouts,
performance by periods, personal fouls, offensive rebounds and different types of shooting charts.
Please see Vinue [...truncated...]
Author: Guillermo Vinue [aut, cre]
Maintainer: Guillermo Vinue <guillermo.vinue@uv.es>
Diff between BAwiR versions 1.5 dated 2026-02-27 and 1.5.1 dated 2026-06-04
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS | 5 +++++ R/do_possession_stats.R | 2 +- R/do_scrape_days_acb.R | 8 ++++++-- R/do_stats.R | 10 +++++----- R/do_stats_teams.R | 20 ++++++++++---------- R/do_volume_threes.R | 25 +++++++++++++++++++------ inst/doc/BAwiR.html | 4 ++-- inst/doc/BAwiR_pbp.html | 4 ++-- inst/doc/BAwiR_sc.html | 4 ++-- man/do_possession_stats.Rd | 2 +- man/do_scrape_days_acb.Rd | 8 ++++++-- 13 files changed, 75 insertions(+), 49 deletions(-)
Title: Procedures Based on Item Response Theory Models for the
Development of Short Test Forms
Description: Implement different Item Response Theory (IRT) based procedures for the development of tests from item bank. The procedures are flexible enough to be adopted for the development of short forms of full-length tests. Different procedures are considered (Epifania, Anselmi & Robusto, 2022 <doi:10.1007/978-3-031-27781-8_7> and Epifania & Finos, 2025 <doi:10.1007/978-3-031-95995-0_32>).
The main difference between the presented procedures refers to the degree of control that they allow for targeting specific latent trait levels. The simplest procedure, denoted as benchmark procedure, does not allow for any control on the latent trait levels of interest, while the other procedures allow for specifying either discrete latent trait levels for which the information needs to be maximized (theta-target procedure, <doi:10.1007/978-3-031-27781-8_7>) or a target information function that needs to be recreated with the selected items (item selection algorithm -ISA- denoted as [...truncated...]
Author: Ottavia M. Epifania [aut, cre] ,
Pasquale Anselmi [ctb],
Egidio Robusto [ctb],
Livio Finos [ctb]
Maintainer: Ottavia M. Epifania <ottavia.epifania@unitn.it>
Diff between shortIRT versions 1.0.0 dated 2026-01-27 and 2.0.0 dated 2026-06-04
shortIRT-1.0.0/shortIRT/man/figures |only shortIRT-2.0.0/shortIRT/DESCRIPTION | 19 shortIRT-2.0.0/shortIRT/MD5 | 84 +- shortIRT-2.0.0/shortIRT/NAMESPACE | 52 - shortIRT-2.0.0/shortIRT/NEWS.md | 8 shortIRT-2.0.0/shortIRT/R/IRT.R | 153 +++- shortIRT-2.0.0/shortIRT/R/bench.R | 131 ++- shortIRT-2.0.0/shortIRT/R/define_targets.R | 41 - shortIRT-2.0.0/shortIRT/R/irt_estimate.R | 15 shortIRT-2.0.0/shortIRT/R/isa.R |only shortIRT-2.0.0/shortIRT/R/item_info.R | 400 +++++++++-- shortIRT-2.0.0/shortIRT/R/plot.bench.R | 112 ++- shortIRT-2.0.0/shortIRT/R/plot.iifs.R | 81 +- shortIRT-2.0.0/shortIRT/R/plot.isa.R |only shortIRT-2.0.0/shortIRT/R/plot.theta_target.R | 86 +- shortIRT-2.0.0/shortIRT/R/plot.tif.R | 36 shortIRT-2.0.0/shortIRT/R/summary.bench.R | 56 + shortIRT-2.0.0/shortIRT/R/summary.isa.R |only shortIRT-2.0.0/shortIRT/R/summary.theta_target.R | 52 + shortIRT-2.0.0/shortIRT/R/theta_target.R | 155 ++-- shortIRT-2.0.0/shortIRT/man/IRT.Rd | 53 - shortIRT-2.0.0/shortIRT/man/bench.Rd | 84 +- shortIRT-2.0.0/shortIRT/man/define_targets.Rd | 21 shortIRT-2.0.0/shortIRT/man/i_info.Rd | 123 ++- shortIRT-2.0.0/shortIRT/man/irt_estimate.Rd | 8 shortIRT-2.0.0/shortIRT/man/isa.Rd |only shortIRT-2.0.0/shortIRT/man/item_info.Rd | 130 +++ shortIRT-2.0.0/shortIRT/man/logLik_theta.Rd | 7 shortIRT-2.0.0/shortIRT/man/mpirt.Rd | 62 + shortIRT-2.0.0/shortIRT/man/obsirt.Rd | 25 shortIRT-2.0.0/shortIRT/man/plot.bench.Rd | 79 +- shortIRT-2.0.0/shortIRT/man/plot.iifs.Rd | 43 - shortIRT-2.0.0/shortIRT/man/plot.isa.Rd |only shortIRT-2.0.0/shortIRT/man/plot.theta_target.Rd | 44 - shortIRT-2.0.0/shortIRT/man/plot.tif.Rd | 22 shortIRT-2.0.0/shortIRT/man/summary.bench.Rd | 28 shortIRT-2.0.0/shortIRT/man/summary.isa.Rd |only shortIRT-2.0.0/shortIRT/man/summary.theta_target.Rd | 25 shortIRT-2.0.0/shortIRT/man/theta_target.Rd | 88 +- shortIRT-2.0.0/shortIRT/man/tif.Rd | 37 - shortIRT-2.0.0/shortIRT/tests/testthat/test-IRT.R | 38 + shortIRT-2.0.0/shortIRT/tests/testthat/test-bench.R | 70 + shortIRT-2.0.0/shortIRT/tests/testthat/test-define_targets.R | 22 shortIRT-2.0.0/shortIRT/tests/testthat/test-isa.R |only shortIRT-2.0.0/shortIRT/tests/testthat/test-item_info.R | 73 +- shortIRT-2.0.0/shortIRT/tests/testthat/test-theta_target.R | 72 + 46 files changed, 2069 insertions(+), 566 deletions(-)
Title: Variable Selection using the Pivotal Information Criterion
Description: Sparse regression and classification via the Pivotal
Information Criterion (PIC), an alternative to the Bayesian
Information Criterion (BIC), cross-validation, and Lasso-based
tuning. The regularization parameter is selected from a pivotal
null-distribution statistic, eliminating the need for
cross-validation and yielding sharper support recovery. Provides
Fast Iterative Shrinkage-Thresholding Algorithm (FISTA)
optimization for the L1, Smoothly Clipped Absolute Deviation
(SCAD), and Minimax Concave Penalty (MCP) penalties across six
response distributions: Gaussian, binomial, Poisson, exponential,
Gumbel, and Cox. Under standard sparsity assumptions, the
selector achieves a phase transition for exact support recovery,
analogous to results in compressed sensing. See Sardy, van Cutsem
and van de Geer (2026) <doi:10.48550/arXiv.2603.04172>.
Author: Maxime van Cutsem [aut, cre],
Sylvain Sardy [aut]
Maintainer: Maxime van Cutsem <maxime.vancutsem@unige.ch>
Diff between picreg versions 0.1.2 dated 2026-06-03 and 0.1.3 dated 2026-06-04
picreg-0.1.2/picreg/man/print.pic.coef.Rd |only picreg-0.1.3/picreg/DESCRIPTION | 17 picreg-0.1.3/picreg/MD5 | 93 - picreg-0.1.3/picreg/NAMESPACE | 4 picreg-0.1.3/picreg/NEWS.md |only picreg-0.1.3/picreg/R/assess.R | 2 picreg-0.1.3/picreg/R/data.R | 4 picreg-0.1.3/picreg/R/diagnostics.R | 12 picreg-0.1.3/picreg/R/families.R | 4 picreg-0.1.3/picreg/R/fista.R | 6 picreg-0.1.3/picreg/R/lambda-pdb.R | 12 picreg-0.1.3/picreg/R/methods-picr.R | 141 ++ picreg-0.1.3/picreg/R/penalties.R | 2 picreg-0.1.3/picreg/R/picr.R | 140 +- picreg-0.1.3/picreg/R/plots.R | 19 picreg-0.1.3/picreg/R/prepareX.R | 36 picreg-0.1.3/picreg/R/survival.R | 4 picreg-0.1.3/picreg/README.md | 37 picreg-0.1.3/picreg/inst/doc/vignette.R | 16 picreg-0.1.3/picreg/inst/doc/vignette.Rmd | 223 ++-- picreg-0.1.3/picreg/inst/doc/vignette.html | 520 +++++----- picreg-0.1.3/picreg/man/BinomialExample.Rd | 2 picreg-0.1.3/picreg/man/CoxExample.Rd | 2 picreg-0.1.3/picreg/man/assess.Rd | 2 picreg-0.1.3/picreg/man/check_X.Rd | 6 picreg-0.1.3/picreg/man/coef.pic.Rd | 29 picreg-0.1.3/picreg/man/cox_partial_log_likelihood.Rd | 6 picreg-0.1.3/picreg/man/fista.Rd | 6 picreg-0.1.3/picreg/man/lambda_pdb.Rd | 8 picreg-0.1.3/picreg/man/pdb_asymptotic.Rd | 8 picreg-0.1.3/picreg/man/phase_transition.Rd | 2 picreg-0.1.3/picreg/man/pic.Rd | 134 +- picreg-0.1.3/picreg/man/pic_families.Rd | 4 picreg-0.1.3/picreg/man/pic_methods.Rd | 2 picreg-0.1.3/picreg/man/pic_penalties.Rd | 2 picreg-0.1.3/picreg/man/picreg-package.Rd | 3 picreg-0.1.3/picreg/man/plot.pic.Rd | 2 picreg-0.1.3/picreg/man/plot.pic.pdb_asymptotic.Rd | 2 picreg-0.1.3/picreg/man/plot_survival_curves.Rd | 2 picreg-0.1.3/picreg/man/print.summary.pic.Rd |only picreg-0.1.3/picreg/man/summary.pic.Rd |only picreg-0.1.3/picreg/src/fista.cpp | 4 picreg-0.1.3/picreg/src/fista_cox.cpp | 4 picreg-0.1.3/picreg/tests/testthat/test-feature-names.R | 4 picreg-0.1.3/picreg/tests/testthat/test-intercept-standardize.R | 15 picreg-0.1.3/picreg/tests/testthat/test-lambda-max.R | 2 picreg-0.1.3/picreg/tests/testthat/test-lambda-pdb.R | 4 picreg-0.1.3/picreg/tests/testthat/test-pic-gaussian.R | 17 picreg-0.1.3/picreg/tests/testthat/test-summary.R |only picreg-0.1.3/picreg/vignettes/vignette.Rmd | 223 ++-- 50 files changed, 945 insertions(+), 842 deletions(-)
Title: Matrix-Variate Non-Gaussian Linear Regression Models
Description: An implementation of the expectation conditional maximization (ECM) algorithm for matrix-variate variance gamma (MVVG) and normal-inverse Gaussian (MVNIG) linear models. These models are designed for settings of multivariate analysis with clustered non-uniform observations and correlated responses. The package includes fitting and prediction functions for both models, and an example dataset from a periodontal on Gullah-speaking African Americans, with responses in 'gaad_res', and covariates in 'gaad_cov'. For more details on the matrix-variate distributions used, see Gallaugher & McNicholas (2019) <doi:10.1016/j.spl.2018.08.012>.
Author: Samuel Soon [aut, cre],
Dipankar Bandyopadhyay [aut],
Qingyang Liu [aut]
Maintainer: Samuel Soon <samksoon2@gmail.com>
Diff between MVNGmod versions 0.1.0 dated 2026-02-23 and 0.1.1 dated 2026-06-04
DESCRIPTION | 10 MD5 | 24 - NAMESPACE | 1 R/MVNGmod.R | 875 ++++++++++++++++++++++++++++++++++++++++++++++++----- build |only inst |only man/MVNIGmod.Rd | 22 - man/MVVGmod.Rd | 22 - man/case_del.Rd |only man/predict.Rd | 18 - man/theta_mvnig.Rd | 2 man/theta_mvvg.Rd | 2 vignettes |only 13 files changed, 847 insertions(+), 129 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-04-11 0.1.5
2025-03-15 0.1.4
Title: R Session Information
Description: Query and print information about the current R session. It
is similar to 'utils::sessionInfo()', but includes more information
about packages, and where they were installed from.
Author: Gabor Csardi [cre],
Hadley Wickham [aut],
Winston Chang [aut],
Robert Flight [aut],
Kirill Mueller [aut],
Jim Hester [aut],
R Core team [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between sessioninfo versions 1.2.3 dated 2025-02-05 and 1.2.4 dated 2026-06-04
DESCRIPTION | 18 ++-- MD5 | 71 +++++++++--------- NEWS.md | 4 + R/clipboard.R | 1 R/compare.R | 86 +++++++++++----------- R/dependent-packages.R | 31 ++++---- R/external-info.R | 10 +- R/github-actions.R | 34 ++++++-- R/loaded-packages.R | 8 +- R/osname.R | 1 R/package-info.R | 119 +++++++++++++++++++------------ R/platform-info.R | 68 +++++++++++------ R/printing.R | 1 R/python-info.R | 17 ++-- R/rematch2.R | 15 +-- R/session-info.R | 24 ++---- R/utils.R | 3 README.md | 2 man/external_info.Rd | 4 - man/package_info.Rd | 2 man/platform_info.Rd | 8 +- man/python_info.Rd | 2 man/session_diff.Rd | 2 man/session_info.Rd | 2 man/sessioninfo-package.Rd | 4 - tests/testthat/_snaps/diff.md | 24 ++++++ tests/testthat/_snaps/utils.md |only tests/testthat/test-dependent-packages.R | 77 ++++++++++++++++---- tests/testthat/test-diff.R | 37 +++------ tests/testthat/test-loaded-packages.R | 1 tests/testthat/test-os-name.R | 4 - tests/testthat/test-package-info.R | 20 ++--- tests/testthat/test-platform-info.R | 16 +++- tests/testthat/test-printing.R | 1 tests/testthat/test-session-info.R | 7 + tests/testthat/test-utils.R | 3 tests/testthat/test-warnings.R | 18 +++- 37 files changed, 453 insertions(+), 292 deletions(-)
Title: Reading Annual and Quarterly Financial Reports from B3
Description: Reads annual and quarterly financial reports from companies traded at B3, the Brazilian exchange
<https://www.b3.com.br/>.
All data is downloaded and imported from CVM's public ftp site <https://dados.cvm.gov.br/dados/CIA_ABERTA/>.
Author: Marcelo Perlin [aut, cre],
Guilherme Kirch [aut]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetDFPData2 versions 0.6.3 dated 2023-04-25 and 0.6.5 dated 2026-06-04
DESCRIPTION | 14 ++-- MD5 | 43 ++++++------ NAMESPACE | 1 NEWS.md | 12 +++ R/fct_clean_dfp_itr_data.R | 25 ++++++- R/fct_download_file.R | 12 +-- R/fct_download_read_dfp_zip_file.R | 69 +++++++++++++++----- R/fct_download_read_itr_zip_file.R | 82 +++++++++++++++++------- R/fct_export_xlsx.R | 6 + R/fct_get_dfp_data.R | 2 R/fct_get_dfp_docs.R | 4 - R/fct_get_ftp_contents.R | 4 - R/fct_get_info_companies.R | 13 +-- R/fct_get_itr_data.R | 2 R/fct_get_tickers.R |only R/fct_read_dfp_csv.R | 6 + R/fct_read_itr_csv.R | 6 + R/fct_search_company.R | 9 +- README.md | 2 build/vignette.rds |binary inst/doc/GetDFPData2-vignette-introduction.R | 58 ++++++++-------- inst/doc/GetDFPData2-vignette-introduction.html | 51 +++++++------- man/get_tickers.Rd |only tests/testthat/test-get-tickers.R |only 24 files changed, 270 insertions(+), 151 deletions(-)
Title: Statistical Downscaling of Climate Predictions
Description: Statistical downscaling and bias correction of climate predictions.
It includes implementations of commonly used methods such as Analogs,
Linear Regression, Logistic Regression, and Bias Correction techniques,
as well as interpolation functions for regridding and point-based applications.
It facilitates the production of high-resolution and local-scale climate
information from coarse-scale predictions, which is essential for impact analyses.
The package can be applied in a wide range of sectors and studies,
including agriculture, water management, energy, heatwaves, and other
climate-sensitive applications. The package was developed within the framework of
the European Union Horizon Europe projects Impetus4Change (101081555) and ASPECT (101081460),
the Wellcome Trust supported HARMONIZE project (224694/Z/21/Z), and the Spanish national project
BOREAS (PID2022-140673OA-I00). Implements the methods described in
'Ramon et al. (2021) <doi:10.1088/1748-9326/abe491>',
'Duzenli et al. ( [...truncated...]
Author: BSC-CNS [aut, cph],
Jaume Ramon [aut] ,
Eren Duzenli [aut] ,
Llorenc Lledo [aut] ,
Lluis Palma [ctb],
Sara Moreno-Montes [ctb],
Carlos Delgado [ctb],
Nuria Perez-Zanon [ctb] ,
Javier Corvillo Guerra [ctb],
Raul Marcos [ctb],
Alba Llabres-Brustenga [c [...truncated...]
Maintainer: Victoria Agudetse <victoria.agudetse@bsc.es>
Diff between CSDownscale versions 0.0.2 dated 2026-03-05 and 0.0.3 dated 2026-06-04
DESCRIPTION | 12 MD5 | 10 NEWS.md | 9 R/Intbc.R | 763 ++++++++++++++++++++++++++++++------------------------- man/CST_Intbc.Rd | 20 - man/Intbc.Rd | 36 +- 6 files changed, 471 insertions(+), 379 deletions(-)
Title: Spatially-Aware Cell Clustering Algorithm with Cluster
Significant Assessment
Description: A spatially-aware cell clustering algorithm is provided with cluster significance assessment. It comprises four key modules: spatially-aware cell-gene co-embedding, cell clustering, signature gene identification, and cluster significant assessment. More details can be referred to Peng Xie, et al. (2025) <doi:10.1016/j.cell.2025.05.035>.
Author: Wei Liu [aut, cre],
Xiao Zhang [aut],
Yi Yang [aut],
Peng Xie [aut],
Chengqi Lin [aut],
Jin Liu [aut]
Maintainer: Wei Liu <liuweideng@gmail.com>
Diff between coFAST versions 0.2.0 dated 2025-12-13 and 0.3.0 dated 2026-06-04
DESCRIPTION | 16 ++++---- MD5 | 15 ++++---- NAMESPACE | 4 +- R/CoFAST.R | 95 +++++++++++++++++++++++++++++++++++++++++++++++++--- R/RcppExports.R | 4 ++ README.md | 3 + inst/doc/CosMx.html | 6 +-- src/RcppExports.cpp | 13 +++++++ src/getNB_fast.cpp |only 9 files changed, 132 insertions(+), 24 deletions(-)
Title: Probabilistic Factor Analysis for Spatially-Aware Dimension
Reduction
Description: Probabilistic factor analysis for spatially-aware dimension reduction across multi-section spatial transcriptomics data with millions of spatial locations.
More details can be referred to Wei Liu, et al. (2023) <doi:10.1101/2023.07.11.548486>.
Author: Wei Liu [aut, cre],
Xiao Zhang [aut],
Jin Liu [aut]
Maintainer: Wei Liu <liuweideng@gmail.com>
Diff between ProFAST versions 1.8 dated 2026-04-29 and 1.9 dated 2026-06-04
DESCRIPTION | 18 ++++---- MD5 | 29 +++++++------ NAMESPACE | 6 -- R/CoFAST.R | 4 - R/RcppExports.R | 4 + R/iSCMEB.R | 11 ++++- R/main.R | 100 ++++++++++++++++++++++++++++++++++++++++++++--- README.md | 2 inst/doc/CosMx.html | 4 - inst/doc/FASTdlpfc.html | 4 - inst/doc/FASTdlpfc2.html | 4 - inst/doc/FASTsimu.html | 4 - inst/doc/pbmc3k.html | 4 - man/RunHarmonyLouvain.Rd | 4 + src/RcppExports.cpp | 13 ++++++ src/getNB_fast.cpp |only 16 files changed, 165 insertions(+), 46 deletions(-)
Title: Benchmarking for Multi-Criteria Decision Analysis
Description: Performs and benchmarks various Multi-Criteria Decision Analysis (MCDA)
methods. MCDA is a decision-making framework used to evaluate and rank
alternatives based on multiple conflicting criteria using normalization,
weighting, and aggregation techniques. The package implements a wide range
of MCDA methods including ARAS (Additive Ratio Assessment), AROMAN
(Alternative Ranking Order Method Accounting for two-step Normalization),
COCOSO (Combined Compromise Solution), CODAS (Combinative Distance-based
Assessment), COPRAS (Complex Proportional Assessment), EDAS (Evaluation
based on Distance from Average Solution), ELECTRE (Elimination and Choice
Expressing Reality) family (I-IV), FUCA (Faire Un Choix Adequat), GRA (Grey
Relational Analysis), MABAC (Multi-Attributive Border Approximation Area
Comparison), MAIRCA (Multi-Attributive Ideal-Real Comparative Analysis),
MARCOS (Measurement of Alternatives and Ranking according to Compromise
Solution), MAUT (Multi-Attribute Utility Theory), MAVT [...truncated...]
Author: Cagatay Cebeci [aut, cre]
Maintainer: Cagatay Cebeci <cebecicagatay@gmail.com>
Diff between mcdabench versions 1.1.1 dated 2026-05-12 and 1.1.2 dated 2026-06-04
DESCRIPTION | 8 +-- MD5 | 18 +++---- NAMESPACE | 2 NEWS | 7 ++ R/rankwilcox.R | 117 +++++++++++++++++++++++++++++++++++++++++-------- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/mcdacomp.html | 26 +++++----- inst/doc/sensana.html | 22 ++++----- 10 files changed, 145 insertions(+), 57 deletions(-)
Title: Fast Conversion and Querying of Danish Registers with 'Parquet'
Description: Converts large Danish register files ('sas7bdat') into 'Parquet'
format with year-based 'Hive' partitioning and chunked reading for
larger-than-memory files. Supports parallel conversion with a 'targets'
pipeline and reading those registers into 'DuckDB' tables for faster
querying and analyses.
Author: Signe Kirk Broedbaek [aut, cre] ,
Luke Johnston [aut] ,
Steno Diabetes Center Aarhus [cph],
Aarhus University [cph]
Maintainer: Signe Kirk Broedbaek <signekb@clin.au.dk>
Diff between fastreg versions 0.8.17 dated 2026-02-25 and 0.13.0 dated 2026-06-04
fastreg-0.13.0/fastreg/DESCRIPTION | 14 fastreg-0.13.0/fastreg/MD5 | 68 +- fastreg-0.13.0/fastreg/NAMESPACE | 16 fastreg-0.13.0/fastreg/NEWS.md | 119 ++++ fastreg-0.13.0/fastreg/R/convert.R | 124 +--- fastreg-0.13.0/fastreg/R/fastreg-package.R |only fastreg-0.13.0/fastreg/R/get.R |only fastreg-0.13.0/fastreg/R/list.R | 39 + fastreg-0.13.0/fastreg/R/log.R |only fastreg-0.13.0/fastreg/R/read.R | 134 ++-- fastreg-0.13.0/fastreg/R/simulate-to-sas.R |only fastreg-0.13.0/fastreg/R/use.R |only fastreg-0.13.0/fastreg/README.md | 28 fastreg-0.13.0/fastreg/inst/WORDLIST | 10 fastreg-0.13.0/fastreg/inst/doc/design.R | 23 fastreg-0.13.0/fastreg/inst/doc/design.html | 174 +++++ fastreg-0.13.0/fastreg/inst/doc/design.qmd | 217 ++++++- fastreg-0.13.0/fastreg/inst/doc/fastreg.R | 149 ++--- fastreg-0.13.0/fastreg/inst/doc/fastreg.html | 349 +++++++----- fastreg-0.13.0/fastreg/inst/doc/fastreg.qmd | 278 +++++---- fastreg-0.13.0/fastreg/inst/template-conversion-log.qmd |only fastreg-0.13.0/fastreg/inst/template-targets.R | 50 - fastreg-0.13.0/fastreg/man/convert.Rd |only fastreg-0.13.0/fastreg/man/fastreg-package.Rd |only fastreg-0.13.0/fastreg/man/list_parquet.Rd |only fastreg-0.13.0/fastreg/man/print_log_row_count.Rd |only fastreg-0.13.0/fastreg/man/print_log_schema.Rd |only fastreg-0.13.0/fastreg/man/read_parquet.Rd |only fastreg-0.13.0/fastreg/man/read_register.Rd | 23 fastreg-0.13.0/fastreg/man/simulate_registers_with_paths.Rd |only fastreg-0.13.0/fastreg/man/use_template.Rd |only fastreg-0.13.0/fastreg/man/write_to_sas.Rd |only fastreg-0.13.0/fastreg/tests/testthat/test-convert.R | 191 ++---- fastreg-0.13.0/fastreg/tests/testthat/test-get.R |only fastreg-0.13.0/fastreg/tests/testthat/test-list.R | 52 + fastreg-0.13.0/fastreg/tests/testthat/test-log.R |only fastreg-0.13.0/fastreg/tests/testthat/test-read.R | 173 ++++- fastreg-0.13.0/fastreg/tests/testthat/test-use.R |only fastreg-0.13.0/fastreg/vignettes/design.qmd | 217 ++++++- fastreg-0.13.0/fastreg/vignettes/fastreg.qmd | 278 +++++---- fastreg-0.8.17/fastreg/R/simulate.R |only fastreg-0.8.17/fastreg/R/use-targets.R |only fastreg-0.8.17/fastreg/man/convert_file.Rd |only fastreg-0.8.17/fastreg/man/convert_register.Rd |only fastreg-0.8.17/fastreg/man/save_as_sas.Rd |only fastreg-0.8.17/fastreg/man/simulate_register.Rd |only fastreg-0.8.17/fastreg/man/use_targets_template.Rd |only fastreg-0.8.17/fastreg/tests/testthat/test-use-targets.R |only 48 files changed, 1812 insertions(+), 914 deletions(-)
Title: Runtime Type Checking
Description: Provides a lightweight runtime type system for 'R' that enables
developers to declare and enforce variable types during execution.
Inspired by 'TypeScript', the package introduces intuitive syntax for
annotating variables and validating data structures, helping catch
type-related errors early and making 'R' code more robust and easier
to maintain.
Author: Mohamed El Fodil Ihaddaden [aut, cre]
Maintainer: Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Diff between sicher versions 0.1.0 dated 2026-03-31 and 0.1.1 dated 2026-06-04
DESCRIPTION | 6 MD5 | 18 + NAMESPACE | 6 NEWS.md | 11 - R/main.R | 445 +++++++++++++++++++++++++++++++++++++++++-- README.md | 139 ++++++++++++- man/Between.Rd |only man/Literal.Rd |only man/Matches.Rd |only man/NonEmpty.Rd |only man/NonNA.Rd |only man/extend.Rd |only tests/testthat/test-sicher.R | 436 ++++++++++++++++++++++++++++++++++++++++++ 13 files changed, 1026 insertions(+), 35 deletions(-)
Title: Primary Event Censored Distributions
Description: Provides functions for working with primary
event censored distributions and 'Stan' implementations for use in Bayesian
modeling. Primary event censored distributions are useful for modeling
delayed reporting scenarios in epidemiology and other fields (Charniga et
al. (2024) <doi:10.48550/arXiv.2405.08841>). It also provides support for
arbitrary delay distributions, a range of common primary distributions, and
allows for truncation and secondary event censoring to be accounted for
(Park et al. (2024) <doi:10.1101/2024.01.12.24301247>). A subset of
common distributions also have analytical solutions implemented, allowing
for faster computation. In addition, it provides multiple methods for
fitting primary event censored distributions to data via optional
dependencies.
Author: Sam Abbott [aut, cre, cph] ,
Sam Brand [aut] ,
Adam Howes [ctb] ,
James Mba Azam [aut] ,
Carl Pearson [aut] ,
Sebastian Funk [aut] ,
Kelly Charniga [aut]
Maintainer: Sam Abbott <contact@samabbott.co.uk>
Diff between primarycensored versions 1.4.0 dated 2026-03-06 and 1.5.0 dated 2026-06-04
DESCRIPTION | 7 MD5 | 104 +++--- NAMESPACE | 1 NEWS.md | 32 + R/check.R | 29 + R/dprimarycensored.R | 54 +-- R/expgrowth.R | 18 - R/fitdistdoublecens.R | 14 R/pcd_cmdstan_model.R | 16 R/pcens_cdf.R | 138 +++----- R/pcens_quantile.R | 77 ++-- R/pprimarycensored.R | 30 - R/qprimarycensored.R | 2 R/rprimarycensored.R | 2 README.md | 49 ++ inst/WORDLIST | 5 inst/doc/analytic-solutions.Rmd | 30 + inst/doc/analytic-solutions.html | 38 +- inst/doc/primarycensored.html | 8 inst/doc/why-it-works.Rmd | 20 + inst/doc/why-it-works.html | 22 + inst/stan/functions/expgrowth.stan | 8 inst/stan/functions/primarycensored.stan | 168 ++++++---- inst/stan/functions/primarycensored_analytical_cdf.stan | 174 ++++------ inst/stan/functions/primarycensored_ode.stan | 30 + inst/stan/pcens_model.stan | 23 + man/dot-check_truncation_bounds.Rd | 5 man/dot-normalise_cdf.Rd | 2 man/dprimarycensored.Rd | 13 man/expgrowth.Rd | 10 man/fitdistdoublecens.Rd | 10 man/pcd_as_stan_data.Rd | 11 man/pcens_quantile.Rd | 9 man/pcens_quantile.default.Rd | 34 -- man/pprimarycensored.Rd | 14 man/qprimarycensored.Rd | 11 man/rprimarycensored.Rd | 11 tests/testthat/setup.R | 11 tests/testthat/test-check_truncation.R | 18 - tests/testthat/test-dprimarycensored.R | 50 ++- tests/testthat/test-expgrowth.R | 263 ++++++---------- tests/testthat/test-fitdistdoublecens.R | 4 tests/testthat/test-pcd_as_stan_data.R | 51 +++ tests/testthat/test-pcd_cmdstan_model.R | 83 ++++- tests/testthat/test-pcens_quantile.R | 5 tests/testthat/test-pprimarycensored.R | 71 +++- tests/testthat/test-qprimarycensored.R | 61 ++- tests/testthat/test-rprimarycensored.R | 32 + tests/testthat/test-stan-dist_lcdf.R | 20 + tests/testthat/test-stan-expgrowth.R | 197 +++++------ tests/testthat/test-stan-rpd-primarycensored.R | 93 +++++ vignettes/analytic-solutions.Rmd | 30 + vignettes/why-it-works.Rmd | 20 + 53 files changed, 1399 insertions(+), 839 deletions(-)
More information about primarycensored at CRAN
Permanent link
Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko [aut, cre] ,
Nick Bearman [rev]
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.12.8 dated 2025-08-20 and 1.12.10 dated 2026-06-04
DESCRIPTION | 14 +-- MD5 | 58 +++++++-------- NAMESPACE | 2 NEWS.md | 16 +++- R/RCzechia.R | 2 R/geocode.R | 30 ++++---- R/katastry.R | 4 - R/obce_polygony.R | 2 R/revgeo.R | 8 +- R/volebni_okrsky.R | 10 +- R/zip_codes.R | 4 - README.md | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/vignette.Rmd | 79 ++++++++------------- inst/doc/vignette.html | 155 +++++++++++++++++++----------------------- man/RCzechia-package.Rd | 5 + man/katastry.Rd | 4 - man/obce_polygony.Rd | 2 man/revgeo.Rd | 4 - man/volebni_okrsky.Rd | 6 - man/zip_codes.Rd | 4 - tests/testthat/test-1-volby.R | 6 - vignettes/brno-center-1.png |binary vignettes/census-1.png |binary vignettes/ctverce-1.png |binary vignettes/geocode-1.png |binary vignettes/relief-1.png |binary vignettes/senat-1.png |binary vignettes/vignette.Rmd | 79 ++++++++------------- 30 files changed, 234 insertions(+), 261 deletions(-)
Title: Estimation of Gas Properties from the Lennard-Jones Potential
Description: Calculation of gas transport properties (viscosity, diffusion, thermal conductivity) using Chapman-Enskok theory (Chapman 1918, <doi:10.1098/rsta.1918.0005>) and of the second virial coefficient (Vargas et al. 2001, <doi:10.1016/s0378-4371(00)00362-9>) using the Lennard-Jones (12-6) potential. Up to the third order correction is taken into account for viscosity and thermal conductivity. It is also possible to calculate the binary diffusion coefficients of polar and non-polar gases in non-polar bath gases (Brown et al. 2011, <doi:10.1016/j.pecs.2010.12.001>). 16 collision integrals are calculated with four digit accuracy over the reduced temperature range [0.3, 400] using an interpolation function of Kim and Monroe (2014, <doi:10.1016/j.jcp.2014.05.018>).
Author: Stefan Langenberg [aut, cre]
Maintainer: Stefan Langenberg <langenberg@uni-bonn.de>
Diff between chapensk versions 0.4 dated 2025-07-29 and 0.5 dated 2026-06-04
DESCRIPTION | 13 MD5 | 34 README.md | 2 build/partial.rdb |binary data/binary_diffusion.csv.gz |binary data/gas.csv.gz |binary man/CollisionIntegral-class.Rd | 4 man/Gas-class.Rd | 6 man/binary_diffusion.Rd | 68 - man/chapensk.Rd | 46 - man/ethane_data.Rd | 4 man/figures/binary_diffusion.pdf |binary man/figures/binary_diffusion.svg | 1707 ++++++++++++++++++--------------------- man/figures/ethane.pdf |binary man/figures/ethane.svg | 721 ++++++++-------- man/figures/fluoromethane.pdf |only man/figures/fluoromethane.svg |only man/gas.Rd | 4 tests/binary_diffusion.R | 58 + 19 files changed, 1332 insertions(+), 1335 deletions(-)
Title: Linear Test Statistics for Permutation Inference
Description: Basic infrastructure for linear test statistics and permutation
inference in the framework of Strasser and Weber (1999) <https://epub.wu.ac.at/102/>.
This package must not be used by end-users. CRAN package 'coin' implements all
user interfaces and is ready to be used by anyone.
Author: Torsten Hothorn [aut, cre] ,
Henric Winell [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between libcoin versions 1.0-12 dated 2026-03-16 and 1.0-13 dated 2026-06-04
DESCRIPTION | 9 MD5 | 54 NAMESPACE | 23 R/AAA.R | 2 R/ctabs.R | 2 R/libcoin.R | 2 build/partial.rdb |binary inst/NEWS.Rd | 33 inst/REFERENCES.bib | 81 inst/doc/libcoin.R | 15 inst/doc/libcoin.Rnw | 5361 ++++++++++++++++++++++------------------ inst/doc/libcoin.pdf |binary inst/include/libcoin.h | 2 inst/include/libcoinAPI.h | 2 inst/include/libcoin_internal.h | 3 inst/nuweb/libcoin.w | 1517 +++++++---- man/LinStatExpCov.Rd | 30 man/ctabs.Rd | 22 man/doTest.Rd | 22 src/Makevars | 23 src/libcoin-init.c | 2 src/libcoin-win.def | 22 src/libcoin.c | 8 src/libcoin.h | 2 src/libcoinAPI.h | 2 src/libcoin_internal.h | 3 vignettes/libcoin.Rnw | 5361 ++++++++++++++++++++++------------------ vignettes/libcoin.Rout.save | 1395 +++++----- 28 files changed, 7917 insertions(+), 6081 deletions(-)
Title: Variance-Aware Michaelis-Menten Estimation and Inference
Description: Variance-aware Michaelis-Menten estimation, model screening,
grouped enzyme-kinetic analyses, and clustered repeated-measurement
workflows. The package implements profile-score estimators under
working variance functions, together with a lightweight cluster-aware
working-covariance extension, Wald and bootstrap confidence intervals,
prediction utilities, and simulation helpers. Related methodology is
discussed by Kim and Ma (2012) <doi:10.1007/s10463-011-0332-y>, Kim
(2023) <doi:10.1002/sta4.606>, and Ma and Genton (2010)
<doi:10.1111/j.1467-9868.2010.00741.x>.
Author: Mijeong Kim [aut, cre],
Minkyoung Cha [aut],
Ah Young Jeong [aut]
Maintainer: Mijeong Kim <m.kim@ewha.ac.kr>
Diff between inferMM versions 0.0.2 dated 2026-05-27 and 0.0.3 dated 2026-06-04
DESCRIPTION | 6 MD5 | 25 +- NAMESPACE | 2 NEWS.md | 6 R/clustered.R | 32 -- R/fit_mm.R | 80 ------ build/vignette.rds |binary inst/CITATION | 4 inst/doc/infer-mm-workflow.R | 1 inst/doc/infer-mm-workflow.html | 473 +++++++++++++++++++--------------------- man/cluster_mm.Rd | 10 man/fit_mm.Rd | 10 tests/testthat/Rplots.pdf |only tests/testthat/test-infer-mm.R | 40 ++- 14 files changed, 306 insertions(+), 383 deletions(-)
Title: Fast, Sensitive, and Accurate Integration of Single Cell Data
Description: Implementation of the Harmony algorithm for single cell integration, described in Patikas, Yao, et al. <doi:10.64898/2026.03.16.711825>. Package includes a standalone Harmony function and interfaces to external frameworks.
Author: Nikolaos Patikas [aut, ctb] ,
Hongcheng Yao [aut, ctb] ,
Ilya Korsunsky [cre, aut] ,
Martin Hemberg [aut] ,
Nghia Millard [aut] ,
Jean Fan [aut, ctb] ,
Kamil Slowikowski [aut, ctb] ,
Miles Smith [ctb],
Soumya Raychaudhuri [aut]
Maintainer: Ilya Korsunsky <ilya.korsunsky@gmail.com>
Diff between harmony versions 2.0.3 dated 2026-05-13 and 2.0.4 dated 2026-06-04
DESCRIPTION | 6 - MD5 | 18 +-- build/partial.rdb |binary build/vignette.rds |binary configure | 179 ++++++++++++++++++-------------------- inst/doc/Seurat.html | 108 +++++++++++----------- inst/doc/detailedWalkthrough.html | 102 ++++++++++----------- inst/doc/quickstart.html | 84 ++++++++--------- src/harmony.cpp | 11 -- src/utils.cpp | 6 - 10 files changed, 253 insertions(+), 261 deletions(-)
Title: Automated Multicollinearity Management
Description: Provides a comprehensive and automated workflow for managing multicollinearity in data frames with numeric and/or categorical variables. The package integrates five robust methods into a single function: (1) target encoding of categorical variables based on response values (Micci-Barreca, 2001 (Micci-Barreca, D. 2001 <doi:10.1145/507533.507538>); (2) automated feature prioritization to preserve key predictors during filtering; (3 and 4) pairwise correlation and VIF filtering across all variable types (numeric–numeric, numeric–categorical, and categorical–categorical); (5) adaptive correlation and VIF thresholds. Together, these methods enable a reliable multicollinearity management in most use cases while maintaining model integrity. The package also supports parallel processing and progress tracking via the packages 'future' and 'progressr', and provides seamless integration with the 'tidymodels' ecosystem through a dedicated recipe step.
Author: Blas M. Benito [aut, cre, cph]
Maintainer: Blas M. Benito <blasbenito@gmail.com>
Diff between collinear versions 3.0.1 dated 2026-05-07 and 3.0.2 dated 2026-06-04
DESCRIPTION | 6 MD5 | 110 +++++------ NEWS.md | 10 - R/collinear.R | 185 +++++++++----------- R/model_formula.R | 5 R/preference_order.R | 8 README.md | 159 ++++++++--------- inst/CITATION | 2 man/case_weights.Rd | 4 man/collinear.Rd | 183 +++++++++---------- man/collinear_select.Rd | 29 --- man/collinear_stats.Rd | 8 man/cor_clusters.Rd | 8 man/cor_cramer.Rd | 4 man/cor_df.Rd | 13 - man/cor_matrix.Rd | 8 man/cor_select.Rd | 21 -- man/cor_stats.Rd | 8 man/drop_geometry_column.Rd | 9 man/f_auto.Rd | 13 - man/identify_categorical_variables.Rd | 12 - man/identify_logical_variables.Rd | 12 - man/identify_numeric_variables.Rd | 12 - man/identify_response_type.Rd | 9 man/identify_valid_variables.Rd | 12 - man/identify_zero_variance_variables.Rd | 16 - man/model_formula.Rd | 13 - man/preference_order.Rd | 20 -- man/score_auc.Rd | 4 man/score_cramer.Rd | 4 man/score_r2.Rd | 4 man/target_encoding_lab.Rd | 13 - man/target_encoding_methods.Rd | 9 man/validate_arg_df.Rd | 12 - man/validate_arg_df_not_null.Rd | 5 man/validate_arg_predictors.Rd | 12 - man/validate_arg_preference_order.Rd | 16 - man/validate_arg_responses.Rd | 8 man/vif.Rd | 8 man/vif_df.Rd | 19 -- man/vif_select.Rd | 24 -- man/vif_stats.Rd | 13 - tests/testthat/test-collinear.R | 6 tests/testthat/test-collinear_select.R | 44 ---- tests/testthat/test-collinear_stats.R | 3 tests/testthat/test-cor_df.R | 9 tests/testthat/test-cor_matrix.R | 3 tests/testthat/test-cor_select.R | 14 - tests/testthat/test-cor_stats.R | 7 tests/testthat/test-f_numeric_glm.R | 4 tests/testthat/test-model_formula.R | 30 ++- tests/testthat/test-preference_order.R | 9 tests/testthat/test-step_collinear.R | 10 - tests/testthat/test-validate_arg_df.R | 43 +++- tests/testthat/test-validate_arg_preference_order.R | 22 +- tests/testthat/test-vif_select.R | 26 -- 56 files changed, 545 insertions(+), 735 deletions(-)
Title: Construct Mixed Type Data Structures with Vectors of Vectors
Description: Mixed type vectors are useful for combining semantically similar
classes. Some examples of semantically related classes include time across
different granularities (e.g. daily, monthly, annual) and probability
distributions (e.g. Normal, Uniform, Poisson). These groups of vector types
typically share common statistical operations which vary in results with the
attributes of each vector. The 'vecvec' data structure facilitates efficient
storage and computation across multiple vectors within the same object.
Author: Mitchell O'Hara-Wild [aut, cre]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between vecvec versions 1.0.0 dated 2026-04-27 and 1.1.0 dated 2026-06-04
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 14 ++++++++++++++ R/flatten.R | 5 ++++- R/replacement.R | 13 ++++++++++++- R/utils.R | 8 ++++++++ R/vecvec.R | 19 +++++++++++++++++-- tests/testthat/test-replacement.R | 21 +++++++++++++++++++++ 8 files changed, 86 insertions(+), 14 deletions(-)
Title: Interactive Reliability Probability Plots
Description: Build interactive Reliability Probability Plots with 'plotly' by Carson Sievert (2020) <https://plotly.com/r/>, an interactive web-based graphing library.
Author: Paul Govan [aut, cre, cph]
Maintainer: Paul Govan <paul.govan2@gmail.com>
Diff between ReliaPlotR versions 0.6 dated 2026-05-27 and 0.7 dated 2026-06-04
DESCRIPTION | 10 ++-- MD5 | 96 +++++++++++++++++++++++++++------------- NAMESPACE | 5 ++ NEWS.md | 13 +++++ R/ReliaPlotR-package.R | 26 ++++++++++ R/mcp_tools.R |only R/plotly_alt.R | 14 +++++ R/plotly_contour.R | 8 +++ R/plotly_duane.R | 13 ++++- R/plotly_exposure.R | 19 +++++-- R/plotly_mcf.R | 11 +++- R/plotly_nhpp.R | 13 ++++- R/plotly_rel.R | 13 +++++ R/plotly_rga.R | 9 +++ R/plotly_wblr.R | 12 +++++ R/tidy_alt.R |only R/tidy_rga.R |only R/tidy_wblr.R |only build |only inst/REFERENCES.bib |only inst/doc |only inst/mcp |only man/ReliaPlotR-package.Rd | 28 ++++++++--- man/figures/logo.png |only man/figures/logo1.png |only man/figures/logo2.png |only man/figures/logo3.png |only man/plotly_alt.Rd | 17 +++++++ man/plotly_contour.Rd | 11 ++++ man/plotly_duane.Rd | 16 +++++- man/plotly_exposure.Rd | 20 ++++++-- man/plotly_mcf.Rd | 12 ++++- man/plotly_nhpp.Rd | 14 +++++ man/plotly_rel.Rd | 16 ++++++ man/plotly_rga.Rd | 12 +++++ man/plotly_wblr.Rd | 15 ++++++ man/reliapltr_mcp_server.Rd |only man/tidy_alt.Rd |only man/tidy_rga.Rd |only man/tidy_wblr.Rd |only tests/testthat/test-alt.R | 7 ++ tests/testthat/test-contour.R | 52 ++++++++++++++++++++- tests/testthat/test-duane.R | 20 ++++++++ tests/testthat/test-rel.R | 17 +++++++ tests/testthat/test-rga.R | 14 +++++ tests/testthat/test-tidy-alt.R |only tests/testthat/test-tidy-rga.R |only tests/testthat/test-tidy-wblr.R |only tests/testthat/test-wblr.R | 29 ++++++++++++ vignettes |only 50 files changed, 498 insertions(+), 64 deletions(-)
Title: Nonparametric Kernel Smoothing Methods for Mixed Data Types
Description: Nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca/>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca/>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://sharcnet.ca/>). We would also like to acknowledge the contributions of the GNU GSL authors. In particular, we adapt the GNU GSL B-spline routine gsl_bspline.c adding automated support for quantile knots (in addition to uniform knots), providing missing functionality for derivatives, and for extending the splines beyond their endpoints.
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between np versions 0.70-2 dated 2026-05-15 and 0.70-3 dated 2026-06-04
CHANGELOG | 137 DESCRIPTION | 15 MD5 | 256 NAMESPACE | 23 NEWS.md | 132 R/bandwidth.R | 4 R/conbandwidth.R | 7 R/condbandwidth.R | 5 R/condensity.R | 32 R/condistribution.R | 32 R/conmode.R | 22 R/dbandwidth.R | 2 R/density.R | 7 R/distribution.R | 7 R/lsqregression.R |only R/np.cdhat.helpers.R | 2 R/np.cmstest.R | 3 R/np.condensity.R | 18 R/np.condensity.bw.R | 1926 ++- R/np.condistribution.R | 18 R/np.condistribution.bw.R | 1396 ++ R/np.copula.R | 8 R/np.deneqtest.R | 3 R/np.density.R | 4 R/np.density.bw.R | 598 R/np.deptest.R | 3 R/np.distribution.R | 4 R/np.distribution.bw.R | 637 + R/np.kernel.R | 2 R/np.lp.degree.search.R | 983 + R/np.lsqregression.R |only R/np.nomad.coordinate.R |only R/np.pairs.R | 7 R/np.plot.engine.bandwidth.R | 20 R/np.plot.engine.conbandwidth.R | 18 R/np.plot.engine.condbandwidth.R | 257 R/np.plot.engine.dbandwidth.R | 20 R/np.plot.engine.plbandwidth.R | 28 R/np.plot.engine.rbandwidth.R | 36 R/np.plot.engine.scbandwidth.R | 36 R/np.plot.engine.sibandwidth.R | 47 R/np.plot.helpers.R | 1460 ++ R/np.plot.methods.R | 107 R/np.plot.runtime.prototype.R | 14 R/np.plregression.R | 167 R/np.plregression.bw.R | 174 R/np.qcmstest.R | 3 R/np.qregression.R | 144 R/np.reghat.R | 39 R/np.regression.R | 41 R/np.regression.bw.R | 1398 ++ R/np.sdeptest.R | 3 R/np.semihat.R | 88 R/np.sigtest.R | 3 R/np.singleindex.bw.R | 548 R/np.smoothcoef.R | 86 R/np.smoothcoef.bw.R | 598 R/np.symtest.R | 3 R/np.unitest.R | 3 R/npregiv.R | 33 R/npuniden.boundary.R | 10 R/progress.R | 47 R/qregression.R | 22 R/rbandwidth.R | 2 R/regression.R | 17 R/sibandwidth.R | 25 R/util.R | 855 + R/zzz.R | 129 README.md | 2 inst/doc/np_entropy_tests.html | 2 inst/doc/np_getting_started.html | 41 man/np.condensity.Rd | 2 man/np.condensity.bw.Rd | 53 man/np.condistribution.Rd | 2 man/np.condistribution.bw.Rd | 37 man/np.conmode.Rd | 2 man/np.copula.Rd | 2 man/np.density.bw.Rd | 35 man/np.distribution.bw.Rd | 19 man/np.options.Rd | 67 man/np.plot.Rd | 4 man/np.plregression.Rd | 2 man/np.plregression.bw.Rd | 22 man/np.qregression.Rd | 2 man/np.quantile.Rd | 9 man/np.regression.Rd | 2 man/np.regression.bw.Rd | 37 man/np.singleindex.Rd | 2 man/np.singleindex.bw.Rd | 42 man/np.smoothcoef.Rd | 2 man/np.smoothcoef.bw.Rd | 24 man/nplsqreg.Rd |only man/nplsqregbw.Rd |only src/headers.h | 18 src/jksum.c | 6020 +++++++++ src/kernelb.c | 433 src/kernelcv.c | 78 src/kernele.c | 244 src/np.c | 6153 +++++++++- src/np_init.c | 30 src/nr.c | 21 src/statmods.c | 73 tests/testthat/test-bandwidth-summary-labels.R | 65 tests/testthat/test-bw-summary-contract.R | 27 tests/testthat/test-condensity-bw-metadata-contract.R | 25 tests/testthat/test-condistribution-bw-metadata-contract.R | 25 tests/testthat/test-cv-path-lock-contract.R | 6 tests/testthat/test-fastpath-option-validation-contract.R |only tests/testthat/test-formula-dot-variable-contract.R |only tests/testthat/test-largeh-option-contract.R |only tests/testthat/test-native-nomad-option-cleanup-contract.R |only tests/testthat/test-npcd-nomad-shortcut-contract.R | 24 tests/testthat/test-npcdens-categorical-profile-bw-contract.R |only tests/testthat/test-npcdens-categorical-profile-fit-contract.R |only tests/testthat/test-npcdens-cvls-public-contract.R | 47 tests/testthat/test-npcdens-cvml-public-contract.R | 8 tests/testthat/test-npcdist-cvls-public-contract.R | 41 tests/testthat/test-npconmode-proper-probability-contract.R | 3 tests/testthat/test-npindex-r-nn-cache-contract.R |only tests/testthat/test-nplsqreg-option-contract.R |only tests/testthat/test-npplreg.R | 38 tests/testthat/test-npreg-cvls-glp-fixed-contract.R | 50 tests/testthat/test-npreg-fit-fastpath-composition-contract.R |only tests/testthat/test-npreg-nomad-shortcut-contract.R | 24 tests/testthat/test-npregbw-degree-search-nomad-routing-contract.R | 85 tests/testthat/test-npscoef-categorical-profile-bw-contract.R |only tests/testthat/test-npscoef-categorical-profile-contract.R |only tests/testthat/test-npscoef-r-nn-cache-contract.R |only tests/testthat/test-npudens-categorical-cache-contract.R |only tests/testthat/test-npudens-categorical-profile-bw-contract.R |only tests/testthat/test-npudens-categorical-profile-fit-contract.R |only tests/testthat/test-npudist-categorical-profile-bw-contract.R |only tests/testthat/test-npudist-categorical-profile-fit-contract.R |only tests/testthat/test-powell-fixed-objective-cache-contract.R |only tests/testthat/test-powell-nn-cache-option-contract.R |only tests/testthat/test-progress-bandwidth-common-contract.R | 58 tests/testthat/test-progress-core.R | 46 tests/testthat/test-regression-categorical-profile-compression-contract.R |only tests/testthat/test-regression-categorical-state-contract.R |only tests/testthat/test-rng-state-contract.R |only tests/testthat/test-seed-helper-contract.R | 20 tests/testthat/test-semiparam-nomad-shortcut-contract.R | 25 tests/testthat/test-tree-categorical-split-contract.R |only 143 files changed, 24545 insertions(+), 2328 deletions(-)
Title: Interface to the 'nanoarrow' 'C' Library
Description: Provides an 'R' interface to the 'nanoarrow' 'C' library and the
'Apache Arrow' application binary interface. Functions to import and
export 'ArrowArray', 'ArrowSchema', and 'ArrowArrayStream' 'C' structures
to and from 'R' objects are provided alongside helpers to facilitate zero-copy
data transfer among 'R' bindings to libraries implementing the 'Arrow' 'C'
data interface.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between nanoarrow versions 0.8.0 dated 2026-02-10 and 0.8.0-1 dated 2026-06-04
DESCRIPTION | 6 - MD5 | 12 +-- NEWS.md | 4 + man/convert_array.Rd | 2 man/infer_nanoarrow_ptype.Rd | 2 src/nanoarrow.c | 171 +++++++++++++++++++++++++------------------ src/nanoarrow.h | 4 - 7 files changed, 117 insertions(+), 84 deletions(-)
Title: 'GGML' Tensor Operations for Machine Learning
Description: Provides 'R' bindings to the 'GGML' tensor library for machine
learning, optimized for 'Vulkan' GPU acceleration with a transparent CPU
fallback. The package features a 'Keras'-like sequential API and a
'PyTorch'-style 'autograd' engine for building, training, and deploying
neural networks. Key capabilities include high-performance 5D tensor
operations, 'f16' precision, and efficient quantization. It supports
native 'ONNX' model import (50+ operators) and 'GGUF' weight loading
from the 'llama.cpp' and 'Hugging Face' ecosystems. Designed for
zero-overhead inference via dedicated weight buffering, it integrates
seamlessly as a 'parsnip' engine for 'tidymodels' and provides
first-class learners for the 'mlr3' framework.
See <https://github.com/ggml-org/ggml> for more information about the
underlying library.
Author: Yuri Baramykov [aut, cre] ,
Georgi Gerganov [ctb, cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
Mozilla Foundation [ctb, cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between ggmlR versions 0.7.7 dated 2026-05-25 and 0.7.8 dated 2026-06-04
DESCRIPTION | 6 MD5 | 209 +- NAMESPACE | 2 NEWS.md | 4 R/LearnerRegrGGML.R | 25 R/gguf.R | 28 R/helpers.R | 34 R/nn_model.R | 57 R/optimizer.R | 28 R/zzz.R | 5 configure.win | 11 inst/doc/autograd-engine.R | 344 ++-- inst/doc/autograd-engine.Rmd | 4 inst/doc/autograd-engine.html | 273 +-- inst/doc/data-parallel-training.R | 186 +- inst/doc/data-parallel-training.Rmd | 4 inst/doc/data-parallel-training.html | 2303 -------------------------------- inst/doc/embedding-ggmlR.R | 10 inst/doc/embedding-ggmlR.Rmd | 4 inst/doc/gpu-vulkan.R | 132 - inst/doc/gpu-vulkan.Rmd | 4 inst/doc/gpu-vulkan.html | 158 -- inst/doc/keras-like-api.R | 630 ++++---- inst/doc/keras-like-api.Rmd | 4 inst/doc/keras-like-api.html | 528 +++---- inst/doc/mlr3-integration.R | 213 +- inst/doc/mlr3-integration.Rmd | 7 inst/doc/mlr3-integration.html | 70 inst/doc/quantization.R | 142 + inst/doc/quantization.Rmd | 4 inst/doc/quantization.html | 113 - inst/doc/tidymodels-integration.R | 89 - inst/doc/tidymodels-integration.Rmd | 5 inst/doc/tidymodels-integration.html | 53 man/ggml_fit_opt.Rd | 2 man/ggml_opt_alloc.Rd | 2 man/ggml_opt_context_optimizer_type.Rd | 2 man/ggml_opt_dataset_data.Rd | 2 man/ggml_opt_dataset_free.Rd | 2 man/ggml_opt_dataset_get_batch.Rd | 2 man/ggml_opt_dataset_init.Rd | 2 man/ggml_opt_dataset_labels.Rd | 2 man/ggml_opt_dataset_ndata.Rd | 2 man/ggml_opt_dataset_shuffle.Rd | 2 man/ggml_opt_dataset_weights.Rd |only man/ggml_opt_default_params.Rd | 2 man/ggml_opt_epoch.Rd | 2 man/ggml_opt_eval.Rd | 2 man/ggml_opt_fit.Rd | 2 man/ggml_opt_free.Rd | 2 man/ggml_opt_get_lr.Rd | 2 man/ggml_opt_grad_acc.Rd | 2 man/ggml_opt_init.Rd | 2 man/ggml_opt_init_for_fit.Rd | 2 man/ggml_opt_inputs.Rd | 2 man/ggml_opt_labels.Rd | 2 man/ggml_opt_loss.Rd | 2 man/ggml_opt_loss_type_cross_entropy.Rd | 2 man/ggml_opt_loss_type_mean.Rd | 2 man/ggml_opt_loss_type_mse.Rd | 2 man/ggml_opt_loss_type_sum.Rd | 2 man/ggml_opt_loss_type_weighted_mse.Rd |only man/ggml_opt_ncorrect.Rd | 2 man/ggml_opt_optimizer_name.Rd | 2 man/ggml_opt_optimizer_type_adamw.Rd | 2 man/ggml_opt_optimizer_type_sgd.Rd | 2 man/ggml_opt_outputs.Rd | 2 man/ggml_opt_pred.Rd | 2 man/ggml_opt_prepare_alloc.Rd | 2 man/ggml_opt_reset.Rd | 2 man/ggml_opt_result_accuracy.Rd | 2 man/ggml_opt_result_free.Rd | 2 man/ggml_opt_result_init.Rd | 2 man/ggml_opt_result_loss.Rd | 2 man/ggml_opt_result_ndata.Rd | 2 man/ggml_opt_result_pred.Rd | 2 man/ggml_opt_result_reset.Rd | 2 man/ggml_opt_set_lr.Rd | 2 man/ggml_opt_static_graphs.Rd | 2 man/gguf_load.Rd | 14 man/gguf_tensor_info.Rd | 6 man/slice_first_dim.Rd |only src/ggml-backend-impl.h | 3 src/ggml-backend-meta.cpp | 22 src/ggml-backend.h | 9 src/ggml-opt.cpp | 98 + src/ggml-opt.h | 10 src/onnx/onnx_ggml.c | 16 src/onnx/onnx_ggml.h | 5 src/r_interface.c | 21 src/r_interface_backend.c | 28 src/r_interface_gguf.c | 69 src/r_interface_graph.c | 43 src/r_interface_opt.c | 19 src/r_interface_scheduler.c | 30 src/r_interface_vulkan.c | 13 tests/testthat.R | 59 tests/testthat/test-conv2d-numeric.R | 5 tests/testthat/test-gguf.R | 76 + vignettes/autograd-engine.Rmd | 4 vignettes/data-parallel-training.Rmd | 4 vignettes/embedding-ggmlR.Rmd | 4 vignettes/gpu-vulkan.Rmd | 4 vignettes/keras-like-api.Rmd | 4 vignettes/mlr3-integration.Rmd | 7 vignettes/quantization.Rmd | 4 vignettes/tidymodels-integration.Rmd | 5 107 files changed, 2365 insertions(+), 3992 deletions(-)
Title: Extension Types for Spatial Data for Use with 'Arrow'
Description: Provides extension types and conversions to between R-native
object types and 'Arrow' columnar types. This includes integration among
the 'arrow', 'nanoarrow', 'sf', and 'wk' packages such that spatial
metadata is preserved wherever possible. Extension type implementations
ensure first-class geometry data type support in the 'arrow' and 'nanoarrow'
packages.
Author: Dewey Dunnington [aut, cre] ,
Anthony North [ctb],
Apache Software Foundation [cph],
Ulf Adams [cph],
Daniel Lemire [cph],
Joao Paulo Magalhaes [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between geoarrow versions 0.4.2 dated 2026-02-08 and 0.4.3 dated 2026-06-04
DESCRIPTION | 6 MD5 | 10 NEWS.md | 4 src/nanoarrow.c | 704 ++++++++++++++++++++++++++++++++++++-------- src/nanoarrow/nanoarrow.h | 260 +++++++++++++--- src/nanoarrow/nanoarrow.hpp | 10 6 files changed, 820 insertions(+), 174 deletions(-)
Title: EMF Graphics Output Device
Description: Output graphics to EMF+/EMF.
Author: Philip Johnson [aut, cre]
Maintainer: Philip Johnson <plfj@umd.edu>
Diff between devEMF versions 4.5-1 dated 2025-03-24 and 4.6 dated 2026-06-04
DESCRIPTION | 13 +- MD5 | 38 +++---- NEWS | 18 +++ inst/afm/Courier-Bold-ucs.afm.gz |binary inst/afm/Courier-BoldOblique-ucs.afm.gz |binary inst/afm/Courier-Oblique-ucs.afm.gz |binary inst/afm/Courier-ucs.afm.gz |binary inst/afm/Helvetica-Bold-ucs.afm.gz |binary inst/afm/Helvetica-BoldOblique-ucs.afm.gz |binary inst/afm/Helvetica-Oblique-ucs.afm.gz |binary inst/afm/Helvetica-ucs.afm.gz |binary inst/afm/Symbol-ucs.afm.gz |binary inst/afm/Times-Bold-ucs.afm.gz |binary inst/afm/Times-BoldItalic-ucs.afm.gz |binary inst/afm/Times-Italic-ucs.afm.gz |binary inst/afm/Times-Roman-ucs.afm.gz |binary inst/afm/ZapfDingbats-ucs.afm.gz |binary man/emf.Rd | 5 - src/fontmetrics.h | 146 +++++++++++++++++------------- tools/subunicode.pl | 4 20 files changed, 132 insertions(+), 92 deletions(-)
Title: Evaluate Function Calls on HPC Schedulers (SLURM, LSF, SGE, GCS,
OCS, PBS, Torque)
Description: Evaluate arbitrary function calls using workers on HPC schedulers
in single line of code. All processing is done on the network without
accessing the file system. Remote schedulers are supported via SSH.
Author: Michael Schubert [aut, cre, cph] ,
ZeroMQ authors [aut, cph]
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Diff between clustermq versions 0.10.0 dated 2026-04-23 and 0.10.1 dated 2026-06-04
clustermq-0.10.0/clustermq/src/memory.cpp |only clustermq-0.10.0/clustermq/src/memory.h |only clustermq-0.10.1/clustermq/DESCRIPTION | 6 clustermq-0.10.1/clustermq/MD5 | 135 clustermq-0.10.1/clustermq/NEWS.md | 6 clustermq-0.10.1/clustermq/R/master.r | 12 clustermq-0.10.1/clustermq/R/qsys_sge.r | 87 clustermq-0.10.1/clustermq/build/vignette.rds |binary clustermq-0.10.1/clustermq/src/CMQMaster.h | 5 clustermq-0.10.1/clustermq/src/CMQProxy.h | 2 clustermq-0.10.1/clustermq/src/CMQWorker.h | 2 clustermq-0.10.1/clustermq/src/cppzmq/zmq.hpp | 2 clustermq-0.10.1/clustermq/src/libzmq/Makefile.in | 547 clustermq-0.10.1/clustermq/src/libzmq/aclocal.m4 | 466 clustermq-0.10.1/clustermq/src/libzmq/builds/Makefile.in | 19 clustermq-0.10.1/clustermq/src/libzmq/builds/deprecated-msvc/Makefile.in | 19 clustermq-0.10.1/clustermq/src/libzmq/config.log |only clustermq-0.10.1/clustermq/src/libzmq/config/compile | 11 clustermq-0.10.1/clustermq/src/libzmq/config/config.guess | 112 clustermq-0.10.1/clustermq/src/libzmq/config/config.sub | 251 clustermq-0.10.1/clustermq/src/libzmq/config/depcomp | 15 clustermq-0.10.1/clustermq/src/libzmq/config/install-sh | 14 clustermq-0.10.1/clustermq/src/libzmq/config/ltmain.sh | 735 - clustermq-0.10.1/clustermq/src/libzmq/config/missing | 75 clustermq-0.10.1/clustermq/src/libzmq/config/test-driver | 15 clustermq-0.10.1/clustermq/src/libzmq/configure | 5811 +++------- clustermq-0.10.1/clustermq/src/libzmq/doc/Makefile.in | 28 clustermq-0.10.1/clustermq/src/libzmq/doc/zmq.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_atomic_counter_dec.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_atomic_counter_destroy.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_atomic_counter_inc.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_atomic_counter_new.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_atomic_counter_set.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_atomic_counter_value.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_bind.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_close.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_connect.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_connect_peer.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_ctx_get.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_ctx_new.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_ctx_set.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_ctx_shutdown.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_ctx_term.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_curve.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_curve_keypair.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_curve_public.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_disconnect.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_errno.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_getsockopt.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_gssapi.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_has.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_inproc.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_ipc.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_close.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_copy.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_data.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_get.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_gets.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_init.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_init_buffer.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_init_data.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_init_size.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_more.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_move.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_recv.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_routing_id.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_send.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_set.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_set_routing_id.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_msg_size.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_null.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_pgm.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_plain.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_poll.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_poller.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_ppoll.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_proxy.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_proxy_steerable.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_recv.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_recvmsg.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_send.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_send_const.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_sendmsg.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_setsockopt.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_socket.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_socket_monitor.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_socket_monitor_versioned.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_strerror.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_tcp.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_timers.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_tipc.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_udp.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_unbind.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_version.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_vmci.7 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_z85_decode.3 |only clustermq-0.10.1/clustermq/src/libzmq/doc/zmq_z85_encode.3 |only clustermq-0.10.1/clustermq/src/libzmq/src/platform.hpp.in | 61 clustermq-0.10.1/clustermq/src/mem_stats.cpp |only clustermq-0.10.1/clustermq/src/mem_stats.h |only clustermq-0.10.1/clustermq/tests/bin/bsub | 2 clustermq-0.10.1/clustermq/tests/bin/fake_scheduler.sh | 2 clustermq-0.10.1/clustermq/tests/bin/qsub | 2 clustermq-0.10.1/clustermq/tests/bin/sbatch | 2 clustermq-0.10.1/clustermq/tests/testthat/test-4-pool.r | 14 clustermq-0.10.1/clustermq/tests/testthat/test-5-queue.r | 5 106 files changed, 3116 insertions(+), 5347 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') Driver Manager
Description: Provides a developer-facing interface to 'Arrow' Database
Connectivity ('ADBC') for the purposes of driver development, driver
testing, and building high-level database interfaces for users. 'ADBC'
<https://arrow.apache.org/adbc/> is an API standard for database access
libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcdrivermanager versions 0.23.0-1 dated 2026-04-09 and 0.23.0-2 dated 2026-06-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/c/vendor/nanoarrow/nanoarrow.h | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
More information about adbcdrivermanager at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-21 0.1.0
Title: Political Science Academic Research Gears
Description: Using these tools to simplify the research process of political science and other social sciences. The current version can create folder system for academic project in political science, calculate psychological trait scores, visualize experimental and spatial data, set up color-blind palette, and test for Type I error (false positives) in Qualitative Comparative Analysis (QCA) for crisp-set, multi-value, and fuzzy-set variants.
Author: Yue Hu [aut, cre],
Qian Qiu [ctb],
Wen Deng [ctb],
Bear Braumoeller [ctb]
Maintainer: Yue Hu <yuehu@tsinghua.edu.cn>
Diff between drhutools versions 1.1.0 dated 2026-04-07 and 1.1.1 dated 2026-06-04
drhutools-1.1.0/drhutools/vignettes/drhutools_cache |only drhutools-1.1.1/drhutools/DESCRIPTION | 8 - drhutools-1.1.1/drhutools/MD5 | 32 +++---- drhutools-1.1.1/drhutools/NEWS.md | 90 +++++++++++--------- drhutools-1.1.1/drhutools/R/folderSystem.R | 58 ++++++++++++ drhutools-1.1.1/drhutools/R/goodmap.R | 65 ++++++++++++-- drhutools-1.1.1/drhutools/R/internal_coord.R |only drhutools-1.1.1/drhutools/R/sysdata.rda |binary drhutools-1.1.1/drhutools/R/traits.R | 20 ++-- drhutools-1.1.1/drhutools/R/utils.R | 14 +-- drhutools-1.1.1/drhutools/inst/doc/drhutools.html | 11 +- drhutools-1.1.1/drhutools/inst/template |only drhutools-1.1.1/drhutools/man/folderSystem.Rd | 9 +- drhutools-1.1.1/drhutools/man/goodmap.Rd | 16 +++ drhutools-1.1.1/drhutools/man/traits.Rd | 10 +- 15 files changed, 234 insertions(+), 99 deletions(-)