Title: An R Interface to the California Academy of Sciences Eschmeyer's
Catalog of Fishes
Description: Accesses the California Academy of Sciences Eschmeyer's Catalog of Fishes in R using web requests. The Catalog of fishes is the leading authority in fish taxonomy. Functions in the package allow users to search for fish taxa and valid names, retrieve taxonomic references, retrieve monthly taxonomic changes, obtain natural history collection information, and see the number of species by taxonomic group. For more information on the Catalog: Fricke, R., Eschmeyer, W. N. & R. van der Laan (eds) 2025. ESCHMEYER'S CATALOG OF FISHES <https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp>.
Author: Samuel R. Borstein [aut, cre],
Brandon Dominy [aut],
Brian O'Meara [aut]
Maintainer: Samuel R. Borstein <sam@borstein.com>
Diff between rcatfish versions 1.0.2 dated 2026-02-19 and 1.0.3 dated 2026-06-12
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 5 ++--- build/vignette.rds |binary inst/doc/rcatfish-vignette.html | 2 +- tests/testthat/test_rcatfish_updates.R | 2 +- 6 files changed, 14 insertions(+), 15 deletions(-)
Title: Fast, Sensitive, and Accurate Integration of Single Cell Data
Description: Implementation of the Harmony algorithm for single cell integration, described in Patikas, Yao, et al. <doi:10.64898/2026.03.16.711825>. Package includes a standalone Harmony function and interfaces to external frameworks.
Author: Nikolaos Patikas [aut, ctb] ,
Hongcheng Yao [aut, ctb] ,
Ilya Korsunsky [cre, aut] ,
Martin Hemberg [aut] ,
Nghia Millard [aut] ,
Jean Fan [aut, ctb] ,
Kamil Slowikowski [aut, ctb] ,
Miles Smith [ctb],
Soumya Raychaudhuri [aut]
Maintainer: Ilya Korsunsky <ilya.korsunsky@gmail.com>
This is a re-admission after prior archival of version 2.0.4 dated 2026-06-04
Diff between harmony versions 2.0.4 dated 2026-06-04 and 2.0.5 dated 2026-06-12
DESCRIPTION | 6 +- MD5 | 16 ++--- R/zzz.R | 36 ++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/Seurat.html | 108 ++++++++++++++++++------------------- inst/doc/detailedWalkthrough.html | 102 +++++++++++++++++----------------- inst/doc/quickstart.html | 84 ++++++++++++++-------------- tests/testthat/test_two_variable.R | 106 ++++++++++++++++++------------------ 9 files changed, 230 insertions(+), 228 deletions(-)
Title: Online Changepoint Detection in Univariate and Multivariate Data
Streams
Description: Provides high-performance online changepoint detection in univariate and multivariate data
streams. Implements efficient 'C++' backends for the 'focus', 'md-focus' and 'np-focus'
algorithms, with an 'R' interface for real-time monitoring and offline analysis.
The package bundles code from 'Qhull' <http://www.qhull.org/>, by C. B. Barber and
The Geometry Center. See 'inst/COPYRIGHTS' for details.
Author: Gaetano Romano [aut, cre, trl],
Kes Ward [aut],
Yuntang Fan [aut],
Guillem Rigaill [aut],
Vincent Runge [aut],
Paul Fearnhead [aut],
Idris A. Eckley [aut],
C. B. Barber [ctb, cph] ,
The Geometry Center [cph]
Maintainer: Gaetano Romano <g.romano@lancaster.ac.uk>
Diff between focus versions 0.1.6 dated 2026-06-09 and 0.1.7 dated 2026-06-12
DESCRIPTION | 9 +++++---- MD5 | 8 +++++--- src/ChangepointResult.h | 4 ++-- src/Costs.h | 36 +++++++++++++++++++----------------- tests |only 5 files changed, 31 insertions(+), 26 deletions(-)
Title: Utilities for Importing Data from Plain Text Accounting Files
Description: Utilities for querying plain text accounting files from 'Ledger', 'HLedger', and 'Beancount'.
Author: Trevor L. Davis [aut, cre] ,
Jenya Sovetkin [ctb],
Chris Lloyd [ctb]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between ledger versions 2.0.13 dated 2026-03-30 and 2.1.1 dated 2026-06-12
DESCRIPTION | 11 MD5 | 30 NAMESPACE | 2 NEWS.md | 14 R/net_worth.R | 22 R/prune_coa.R | 6 R/register.R | 85 +- README.md | 969 +++++++++++++++++-------------- man/figures/README-income_chart-1.png |binary man/figures/README-net_worth_chart-1.png |binary man/figures/logo.png |only man/figures/logo.svg |only man/net_worth.Rd | 2 man/prune_coa.Rd | 6 man/register.Rd | 15 tests/testthat/test-net_worth.R | 4 tests/testthat/test-register.R | 18 17 files changed, 686 insertions(+), 498 deletions(-)
Title: Diagnostic Tools for Data Frame Joins
Description: Provides diagnostic tools for understanding and debugging data frame
joins. Analyzes key columns before joining to detect duplicates, mismatches,
encoding issues, and other common problems. Explains unexpected row count
changes and provides safe join wrappers with cardinality enforcement. Concepts
and diagnostics build on tidy data principles as described in 'Wickham' (2014)
<doi:10.18637/jss.v059.i10>.
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between joinspy versions 0.8.0 dated 2026-03-31 and 0.8.2 dated 2026-06-12
DESCRIPTION | 8 MD5 | 182 ++--- NAMESPACE | 76 +- NEWS.md | 23 R/JoinReport.R | 8 R/addin.R | 6 R/advanced_patterns.R | 49 - R/backends.R | 239 +++--- R/join_explain.R | 26 R/join_repair.R | 49 - R/join_spy.R | 41 - R/join_strict.R | 66 - R/joinspy-package.R | 2 R/key_check.R | 36 - R/logging.R | 29 R/string_diagnostics.R | 30 R/utils-keys.R |only README.md | 104 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/backends.Rmd | 612 ++++++++--------- inst/doc/backends.html | 4 inst/doc/common-issues.R | 2 inst/doc/common-issues.Rmd | 983 +++++++++++++-------------- inst/doc/common-issues.html | 25 inst/doc/production.R | 8 inst/doc/production.Rmd | 853 ++++++++++++------------ inst/doc/production.html | 134 +-- inst/doc/quickstart.Rmd | 1029 ++++++++++++++--------------- inst/doc/quickstart.html | 68 + inst/doc/why-keys-dont-match.Rmd | 721 ++++++++++---------- inst/doc/why-keys-dont-match.html | 61 - man/addin_join_inspector.Rd | 32 man/analyze_join_chain.Rd | 84 +- man/check_cartesian.Rd | 72 +- man/detect_cardinality.Rd | 72 +- man/dot-analyze_match.Rd | 44 - man/dot-analyze_multicolumn_keys.Rd | 48 - man/dot-check_cols.Rd |only man/dot-classify_cardinality.Rd |only man/dot-detect_backend.Rd | 40 - man/dot-detect_case_mismatch.Rd | 48 - man/dot-detect_empty_strings.Rd | 36 - man/dot-detect_encoding_issues.Rd | 48 - man/dot-detect_factor_mismatch.Rd | 48 - man/dot-detect_near_matches.Rd | 48 - man/dot-detect_numeric_precision.Rd | 36 - man/dot-detect_type_mismatch.Rd | 48 - man/dot-detect_whitespace.Rd | 48 - man/dot-format_bytes.Rd | 36 - man/dot-join_spy_impl.Rd | 64 - man/dot-json_escape.Rd |only man/dot-levenshtein.Rd | 40 - man/dot-make_key.Rd |only man/dot-perform_join.Rd | 60 - man/dot-predict_row_counts.Rd | 44 - man/dot-report_to_list.Rd | 40 - man/dot-report_to_text.Rd | 40 - man/dot-resolve_by.Rd |only man/dot-summarize_keys.Rd | 40 - man/dot-to_json.Rd | 36 - man/dot-validate_df.Rd |only man/full_join_spy.Rd | 74 +- man/get_log_file.Rd | 34 man/inner_join_spy.Rd | 74 +- man/is_join_report.Rd | 34 man/join_diff.Rd | 66 - man/join_explain.Rd | 86 +- man/join_repair.Rd | 126 +-- man/join_spy.Rd | 136 +-- man/join_strict.Rd | 128 +-- man/joinspy-package.Rd | 53 - man/key_check.Rd | 82 +- man/key_duplicates.Rd | 92 +- man/last_report.Rd | 60 - man/left_join_spy.Rd | 106 +- man/log_report.Rd | 92 +- man/new_join_report.Rd | 70 - man/plot.JoinReport.Rd | 86 +- man/print.JoinReport.Rd | 38 - man/right_join_spy.Rd | 74 +- man/set_log_file.Rd | 66 - man/suggest_repairs.Rd | 56 - man/summary.JoinReport.Rd | 60 - tests/testthat/Rplots.pdf |binary tests/testthat/test-backends-integration.R | 166 ++-- tests/testthat/test-backends.R | 344 ++++----- tests/testthat/test-bugfixes.R |only tests/testthat/test-coverage-boost.R | 24 tests/testthat/test-join_strict.R | 28 tests/testthat/test-phase3-6.R | 12 vignettes/backends.Rmd | 612 ++++++++--------- vignettes/common-issues.Rmd | 983 +++++++++++++-------------- vignettes/production.Rmd | 853 ++++++++++++------------ vignettes/quickstart.Rmd | 1029 ++++++++++++++--------------- vignettes/why-keys-dont-match.Rmd | 721 ++++++++++---------- 96 files changed, 6546 insertions(+), 6545 deletions(-)
Title: Species Distribution Modeling with H3 Grids
Description: Provides tools for species distribution modeling using H3
hexagonal grids (Uber Technologies Inc., 2022, <https://h3geo.org>).
Facilitates retrieval of species occurrence records, generation of H3 grids,
computation of landscape metrics, and preparation of spatial data for modern
species distribution models workflows. Designed for biodiversity and landscape ecology research.
Author: Manuel Spinola [aut, cre]
Maintainer: Manuel Spinola <mspinola10@gmail.com>
Diff between h3sdm versions 0.1.4 dated 2026-05-29 and 0.1.5 dated 2026-06-12
DESCRIPTION | 16 - MD5 | 42 ++-- NAMESPACE | 2 NEWS.md | 63 ++++++ R/data-doc.R | 122 +++++++++++- R/h3sdm_aoa.R | 16 - R/h3sdm_filter_outliers.R |only R/h3sdm_pa.R | 197 +++++++++++-------- R/h3sdm_pa_from_records.R | 72 ++++++- R/h3sdm_pres.R |only data/cr_outline.rda |only data/cr_outline_c.rda |binary inst/doc/h3sdm.R | 34 ++- inst/doc/h3sdm.Rmd | 103 ++++++---- inst/doc/h3sdm.html | 280 ++++++++++++++-------------- man/bioclim_current.Rd | 2 man/bioclim_future.Rd | 4 man/cr_outline.Rd |only man/cr_outline_c.Rd | 42 +++- man/h3sdm_filter_outliers.Rd |only man/h3sdm_pa.Rd | 77 ++++--- man/h3sdm_pa_from_records.Rd | 17 + man/h3sdm_pres.Rd |only vignettes/articles/multi_model_workflow.Rmd | 248 +++++++++++------------- vignettes/h3sdm.Rmd | 103 ++++++---- 25 files changed, 915 insertions(+), 525 deletions(-)
Title: NASA 'EarthData' Access Utilities
Description: Providing easy, portable access to NASA 'EarthData' products
through the use of bearer tokens. Much of NASA's public data catalogs hosted
and maintained by its 12 Distributed Active Archive Centers ('DAACs') are
now made available on the Amazon Web Services 'S3' storage. However,
accessing this data through the standard 'S3' API is restricted to only to
compute resources running inside 'us-west-2' Data Center in Portland, Oregon,
which allows NASA to avoid being charged data egress rates. This package
provides public access to the data from any networked device by using the
'EarthData' login application programming interface (API),
<https://www.earthdata.nasa.gov/data/earthdata-login>,
providing convenient authentication and access to cloud-hosted NASA 'EarthData'
products. This makes access to a wide range of earth observation data from
any location straight forward and compatible with R packages that are
widely used with cloud native earth observation data (such as 'terra',
's [...truncated...]
Author: Carl Boettiger [aut, cre, cph] ,
Luis Lopez [aut] ,
Yuvi Panda [aut],
Bri Lind [aut] ,
Andy Teucher [ctb] ,
Openscapes [fnd]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between earthdatalogin versions 0.0.3 dated 2025-07-11 and 0.0.4 dated 2026-06-12
earthdatalogin-0.0.3/earthdatalogin/inst/vignette-sources/gdalcubes-stac-cog-explore.Rmd |only earthdatalogin-0.0.4/earthdatalogin/DESCRIPTION | 6 +- earthdatalogin-0.0.4/earthdatalogin/MD5 | 23 ++++------ earthdatalogin-0.0.4/earthdatalogin/NEWS.md | 7 +++ earthdatalogin-0.0.4/earthdatalogin/R/edl_search.R | 3 - earthdatalogin-0.0.4/earthdatalogin/build/vignette.rds |binary earthdatalogin-0.0.4/earthdatalogin/inst/doc/data-formats.html | 4 - earthdatalogin-0.0.4/earthdatalogin/inst/doc/gdalcubes-stac-cog.html | 6 +- earthdatalogin-0.0.4/earthdatalogin/inst/doc/legacy-formats.html | 6 +- earthdatalogin-0.0.4/earthdatalogin/inst/doc/non-egressed.html | 2 earthdatalogin-0.0.4/earthdatalogin/tests/testthat/test-edl_netrc.R | 3 + earthdatalogin-0.0.4/earthdatalogin/tests/testthat/test-edl_search.R | 15 ++++++ earthdatalogin-0.0.4/earthdatalogin/tests/testthat/test-list-nasa-stacs.R | 10 ++++ 13 files changed, 59 insertions(+), 26 deletions(-)
More information about earthdatalogin at CRAN
Permanent link
Title: A Collection of Tools for Network Analysis
Description: Provides a collection of network analytic (convenience) functions which are missing in other standard packages. This includes triad census with attributes <doi:10.1016/j.socnet.2019.04.003>, core-periphery models <doi:10.1016/S0378-8733(99)00019-2>, and several graph generators. Most functions are build upon 'igraph'.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between netUtils versions 0.8.5 dated 2026-04-14 and 0.8.6 dated 2026-06-12
DESCRIPTION | 6 MD5 | 25 +- NEWS.md | 6 R/dyad_census_attr.R | 11 - R/fast_cliques.R | 4 R/graph_structures.R | 6 R/graphs.R | 8 R/print_igraph.R | 18 +- R/qap.R | 4 R/sample_kcores.R | 4 R/structural_equivalence.R | 2 R/triad_census_attr.R | 316 ++++--------------------------------- R/utils.R | 16 + tests/testthat/test-print_igraph.R |only 14 files changed, 103 insertions(+), 323 deletions(-)
More information about SmokingHistoryGenerator at CRAN
Permanent link
Title: Markov Decision Processes (MDPs)
Description: Create and optimize (semi) MDPs with discrete time steps and
state space. Both hierarchical and ordinary-traditional MDPs can be
modeled.
Author: Lars Relund Nielsen [aut, cre]
Maintainer: Lars Relund Nielsen <lars@relund.dk>
This is a re-admission after prior archival of version 2.1.2 dated 2023-01-31
Diff between MDP2 versions 2.1.2 dated 2023-01-31 and 2.2.2.0 dated 2026-06-12
MDP2-2.1.2/MDP2/R/binary.R |only MDP2-2.1.2/MDP2/R/hmpMDPWriter.R |only MDP2-2.1.2/MDP2/src/matalg.h |only MDP2-2.1.2/MDP2/src/matrix.h |only MDP2-2.2.2.0/MDP2/DESCRIPTION | 26 MDP2-2.2.2.0/MDP2/MD5 | 115 MDP2-2.2.2.0/MDP2/NAMESPACE | 1 MDP2-2.2.2.0/MDP2/NEWS.md | 12 MDP2-2.2.2.0/MDP2/R/convert.R | 3 MDP2-2.2.2.0/MDP2/R/mdp.R | 149 - MDP2-2.2.2.0/MDP2/R/plot.R | 724 ++++- MDP2-2.2.2.0/MDP2/R/writer.R |only MDP2-2.2.2.0/MDP2/build/vignette.rds |binary MDP2-2.2.2.0/MDP2/inst/WORDLIST | 4 MDP2-2.2.2.0/MDP2/inst/doc/building.R | 18 MDP2-2.2.2.0/MDP2/inst/doc/building.Rmd | 16 MDP2-2.2.2.0/MDP2/inst/doc/building.html | 457 +-- MDP2-2.2.2.0/MDP2/inst/doc/finite-mdp.R | 10 MDP2-2.2.2.0/MDP2/inst/doc/finite-mdp.Rmd | 4 MDP2-2.2.2.0/MDP2/inst/doc/finite-mdp.html | 93 MDP2-2.2.2.0/MDP2/inst/doc/infinite-hmdp.R | 14 MDP2-2.2.2.0/MDP2/inst/doc/infinite-hmdp.html | 189 - MDP2-2.2.2.0/MDP2/inst/doc/infinite-mdp.R | 8 MDP2-2.2.2.0/MDP2/inst/doc/infinite-mdp.Rmd | 6 MDP2-2.2.2.0/MDP2/inst/doc/infinite-mdp.html | 113 MDP2-2.2.2.0/MDP2/inst/doc/mdp2.html | 4 MDP2-2.2.2.0/MDP2/inst/examples/convert-ex.R | 13 MDP2-2.2.2.0/MDP2/inst/examples/memoryMDPWriter-ex.R |only MDP2-2.2.2.0/MDP2/inst/examples/plot-ex.R | 76 MDP2-2.2.2.0/MDP2/man/MDP2-package.Rd | 5 MDP2-2.2.2.0/MDP2/man/binaryActionWriter.Rd | 84 MDP2-2.2.2.0/MDP2/man/binaryMDPWriter.Rd | 183 - MDP2-2.2.2.0/MDP2/man/convertBinary2HMP.Rd | 15 MDP2-2.2.2.0/MDP2/man/convertHMP2Binary.Rd | 13 MDP2-2.2.2.0/MDP2/man/getBinInfoActions.Rd | 2 MDP2-2.2.2.0/MDP2/man/getBinInfoStates.Rd | 2 MDP2-2.2.2.0/MDP2/man/getHypergraph.Rd | 83 MDP2-2.2.2.0/MDP2/man/getPolicy.Rd | 4 MDP2-2.2.2.0/MDP2/man/getRPO.Rd | 7 MDP2-2.2.2.0/MDP2/man/hmpMDPWriter.Rd | 59 MDP2-2.2.2.0/MDP2/man/loadMDP.Rd | 3 MDP2-2.2.2.0/MDP2/man/memoryMDPWriter.Rd |only MDP2-2.2.2.0/MDP2/man/plot.HMDP.Rd | 91 MDP2-2.2.2.0/MDP2/man/plotHypergraph.Rd | 145 - MDP2-2.2.2.0/MDP2/man/runCalcWeights.Rd | 2 MDP2-2.2.2.0/MDP2/man/runPolicyIteAve.Rd | 13 MDP2-2.2.2.0/MDP2/man/runPolicyIteDiscount.Rd | 5 MDP2-2.2.2.0/MDP2/man/runValueIte.Rd | 10 MDP2-2.2.2.0/MDP2/src/RcppExports.cpp | 1 MDP2-2.2.2.0/MDP2/src/basicdt.h | 62 MDP2-2.2.2.0/MDP2/src/hmdp.cpp | 2580 +++++++++++++++++-- MDP2-2.2.2.0/MDP2/src/hmdp.h | 1759 +++++++++--- MDP2-2.2.2.0/MDP2/src/modules.cpp | 104 MDP2-2.2.2.0/MDP2/src/timer.h | 172 - MDP2-2.2.2.0/MDP2/tests/testthat/files/cow.csv |only MDP2-2.2.2.0/MDP2/tests/testthat/test_building.R | 519 +++ MDP2-2.2.2.0/MDP2/tests/testthat/test_convert.R | 1 MDP2-2.2.2.0/MDP2/tests/testthat/test_criteria.R | 395 ++ MDP2-2.2.2.0/MDP2/tests/testthat/test_plot.R |only MDP2-2.2.2.0/MDP2/tests/testthat/test_steady.R | 1 MDP2-2.2.2.0/MDP2/vignettes/building.Rmd | 16 MDP2-2.2.2.0/MDP2/vignettes/finite-mdp.Rmd | 4 MDP2-2.2.2.0/MDP2/vignettes/infinite-mdp.Rmd | 6 63 files changed, 6585 insertions(+), 1816 deletions(-)
Title: Computation of the Double-Entry Intraclass Correlation
Description: The functions compute the double-entry intraclass correlation, which is an index of profile similarity (Furr, 2010; McCrae, 2008). The double-entry intraclass correlation is a more precise index of the agreement of two empirically observed profiles than the often-used intraclass correlation (McCrae, 2008). Profiles comprising correlations are automatically transformed according to the Fisher z-transformation before the double-entry intraclass correlation is calculated. If the profiles comprise scores such as sum scores from various personality scales, it is recommended to standardize each individual score prior to computation of the double-entry intraclass correlation (McCrae, 2008). See Furr (2010) <doi:10.1080/00223890903379134> or McCrae (2008) <doi:10.1080/00223890701845104> for details.
Author: Christian Bloetner [aut, cre],
Michael Paul Grosz [aut]
Maintainer: Christian Bloetner <c.bloetner@gmail.com>
Diff between iccde versions 0.3.8 dated 2025-04-23 and 0.3.9 dated 2026-06-12
DESCRIPTION | 6 +- MD5 | 16 ++--- NAMESPACE | 3 - R/iccde.R | 163 +++++++++++++++++++++++++++++++++++++++++++++++++++---- R/iccdeboot.R | 69 +++++++++++++++++------ R/iccdemat.R | 40 +++++++++++-- man/iccde.Rd | 42 ++++++++++++-- man/iccdeboot.Rd | 21 ++++--- man/iccdemat.Rd | 8 ++ 9 files changed, 307 insertions(+), 61 deletions(-)
Title: Temporal Parametric Hazard Modeling
Description: Provides native R implementations of the multiphase parametric
hazard model of Blackstone, Naftel, and Turner (1986)
<doi:10.1080/01621459.1986.10478314> with a focus on behavioral parity,
transparent numerics, and reproducible validation against reference
outputs from the original 'C'/'SAS' HAZARD program, originally developed at
the University of Alabama at Birmingham (UAB). The 'SAS'/'C' code and this R
package are currently developed and maintained at The Cleveland Clinic
Foundation, and the R code was wholly developed at The Cleveland Clinic
Foundation. The generalized temporal
decomposition family extends to longitudinal mixed-effects settings
(Rajeswaran et al. 2018 <doi:10.1177/0962280215623583>). The package is
intentionally implemented in pure R first; performance-critical paths may
later be accelerated with 'Rcpp' without changing the public interface.
Author: John Ehrlinger [aut, cre, cph]
Maintainer: John Ehrlinger <john.ehrlinger@gmail.com>
Diff between TemporalHazard versions 1.0.3 dated 2026-05-30 and 1.1.0 dated 2026-06-12
DESCRIPTION | 6 MD5 | 173 ++-- NEWS.md | 359 +++++++++ R/TemporalHazard-package.R |only R/argument_mapping.R | 3 R/decomposition.R | 44 + R/diagnostics.R | 221 +++-- R/hazard_api.R | 266 ++++++- R/hessian-invert.R |only R/hessian-multiphase.R |only R/likelihood-exponential.R | 68 + R/likelihood-loglogistic.R | 77 ++ R/likelihood-lognormal.R | 97 ++ R/likelihood-multiphase.R | 212 +++++ R/likelihood-weibull.R | 183 ++++ R/math_primitives.R | 41 + R/optimizer.R | 67 + R/phase-spec.R | 70 + R/predict-cl.R | 243 ++++-- R/stepwise-formula.R | 43 + R/stepwise.R | 57 + R/weights-fixture.R |only README.md | 8 inst/doc/clinical-analysis-walkthrough.html | 301 +++++--- inst/doc/fitting-hazard-models.R | 145 +++ inst/doc/fitting-hazard-models.html | 371 +++++++++- inst/doc/fitting-hazard-models.qmd | 327 ++++++++ inst/doc/getting-started.html | 36 inst/doc/inference-diagnostics.html | 56 - inst/doc/inference-diagnostics.qmd | 6 inst/doc/mf-mathematical-foundations.html | 2 inst/doc/mf-mathematical-foundations.qmd | 15 inst/doc/prediction-visualization.html | 4 inst/doc/sas-to-r-migration.html | 50 - inst/extdata/stepwise-fixtures/avc-forward-wald.sas |only inst/extdata/stepwise-fixtures/parse-hazard-lst.R |only inst/extdata/stepwise-fixtures/payload |only inst/extdata/weights-fixtures |only inst/fixtures/mp_synthetic_3phase.rds |binary inst/fixtures/stepwise-avc-forward-wald.rds |only man/TemporalHazard-package.Rd |only man/dot-hzr_conserve_events.Rd | 10 man/dot-hzr_free_vcov.Rd |only man/dot-hzr_predict_jacobian_multiphase.Rd | 10 man/dot-hzr_predict_with_se.Rd | 7 man/dot-hzr_predict_with_se_decomposed.Rd |only man/dot-hzr_select_fixmu_phase.Rd | 20 man/figures/readme-hazard-phases.png |binary man/figures/readme-survival.png |binary man/hazard.Rd | 78 ++ man/hzr_argument_mapping.Rd | 5 man/hzr_clamp_prob.Rd | 11 man/hzr_competing_risks.Rd | 16 man/hzr_deciles.Rd | 37 man/hzr_decompos.Rd | 26 man/hzr_kaplan.Rd | 8 man/hzr_log1mexp.Rd | 20 man/hzr_log1pexp.Rd | 18 man/hzr_nelson.Rd | 8 man/hzr_phase.Rd | 74 + man/hzr_stepwise.Rd | 62 + man/predict.hazard.Rd | 31 man/print.summary.hazard.Rd | 5 man/stepwise_trace.Rd | 3 man/vcov.hazard.Rd | 14 tests/testthat/helper-invariants.R |only tests/testthat/helper-sas-parity.R | 333 ++++++++ tests/testthat/test-coe-left-truncation.R |only tests/testthat/test-conservation-of-events.R | 222 +++++ tests/testthat/test-decompos-boundary.R |only tests/testthat/test-diagnostics.R | 158 +++- tests/testthat/test-exponential-hessian.R |only tests/testthat/test-hazard-api.R | 64 + tests/testthat/test-hessian-invert.R |only tests/testthat/test-hessian-stability.R |only tests/testthat/test-interval-censoring-multiphase.R |only tests/testthat/test-interval-censoring-weibull.R | 74 + tests/testthat/test-invariants.R |only tests/testthat/test-loglogistic-hessian.R |only tests/testthat/test-lognormal-hessian.R |only tests/testthat/test-multiphase-api.R | 28 tests/testthat/test-multiphase-gradient.R | 4 tests/testthat/test-multiphase-hessian.R |only tests/testthat/test-multiphase-likelihood.R | 5 tests/testthat/test-phase-specific-covariates.R |only tests/testthat/test-predict-cl.R | 208 +++++ tests/testthat/test-predict-hazard-multiphase.R |only tests/testthat/test-sas-parity.R | 742 +++++++++++++++++++- tests/testthat/test-stepwise-parity.R | 174 ++-- tests/testthat/test-weibull-event-hazard.R |only tests/testthat/test-weibull-hessian.R |only tests/testthat/test-weights-sas-parity.R |only tests/testthat/test-weights.R | 311 ++++++++ vignettes/fitting-hazard-models.qmd | 327 ++++++++ vignettes/inference-diagnostics.qmd | 6 vignettes/mf-mathematical-foundations.qmd | 15 96 files changed, 5924 insertions(+), 761 deletions(-)
More information about TemporalHazard at CRAN
Permanent link
Title: Datasets from the Hello Data Science Book
Description: Provides datasets used for analysis
and visualizations in the open-access Hello Data Science book.
Author: Mine Dogucu [aut, cre] ,
Catalina Medina [aut] ,
Alma Castro [aut]
Maintainer: Mine Dogucu <mdogucu@gmail.com>
Diff between hellodatascience versions 0.1.0 dated 2026-01-19 and 0.1.1 dated 2026-06-12
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++++++++-- NEWS.md | 4 ++++ R/data-confederations.R |only R/data-country-capital.R |only R/data-country-rank.R |only R/data-mx-us-wc-ranks.R |only data/confederations.rda |only data/country_capital.rda |only data/country_rank.rda |only data/mx_us_wc_ranks.rda |only man/confederations.Rd |only man/country_capital.Rd |only man/country_rank.Rd |only man/mx_us_wc_ranks.Rd |only 15 files changed, 22 insertions(+), 6 deletions(-)
More information about hellodatascience at CRAN
Permanent link
Title: Statistical Disclosure Control Methods for Anonymization of Data
and Risk Estimation
Description: Data from statistical agencies and other institutions are mostly
confidential. This package, introduced in Templ, Kowarik and Meindl (2017) <doi:10.18637/jss.v067.i04>, can be used for the generation of anonymized
(micro)data, i.e. for the creation of public- and scientific-use files.
The theoretical basis for the methods implemented can be found in Templ (2017) <doi:10.1007/978-3-319-50272-4>.
Various risk estimation and anonymization methods are included. Note that the package
includes a graphical user interface published in Meindl and Templ (2019) <doi:10.3390/a12090191> that allows to use various methods of this
package.
Author: Matthias Templ [aut, cre] ,
Bernhard Meindl [aut],
Alexander Kowarik [aut] ,
Johannes Gussenbauer [aut],
Organisation For Economic Co-Operation And Development [cph] code code for rank swapping,
mdav-microaggregation, suda2 and other risk
measures [...truncated...]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between sdcMicro versions 5.8.1 dated 2026-03-10 and 5.8.2 dated 2026-06-12
DESCRIPTION | 19 MD5 | 35 - NAMESPACE | 2 NEWS | 13 R/AI_applyAnonymization.R | 33 R/ai_access_utilities.R | 11 R/measure_risk.R | 117 ++- R/recordLinkage.R |only inst/doc/ai_assisted_anonymization.Rmd | 285 ++++---- inst/doc/ai_assisted_anonymization.html | 397 ++++++----- inst/doc/sdcMicro.html | 4 man/AI_applyAnonymization.Rd | 12 man/query_llm.Rd | 3 man/recordLinkage.Rd |only src/Measure_Risk.h | 1081 +++++++++----------------------- tests/testthat/test_ai_early_stopping.R |only tests/testthat/test_ldiversity.R |only tests/testthat/test_pram.R | 490 ++------------ tests/testthat/test_recordLinkage.R |only vignettes/ai_assisted.bib | 93 ++ vignettes/ai_assisted_anonymization.Rmd | 285 ++++---- 21 files changed, 1194 insertions(+), 1686 deletions(-)
Title: Image Processing for Simulated Cameras
Description: Uses convolution-based techniques to generate simulated camera bokeh, depth of field, and other camera effects, using an image and an optional depth map. Accepts both filename inputs and in-memory array representations of images and matrices, including common raster formats such as 'JPEG', 'PNG', 'TIFF', 'TGA', 'BMP', 'PSD', 'GIF', 'HDR', 'PIC', 'PNM', 'DNG', and 'EXR'. Includes functions to perform 2D convolutions, color correction, colorspace conversion, image/matrix reorientation and resizing, image and text overlays, exposure adjustment, camera vignette effects, and image titles.
Author: Tyler Morgan-Wall [aut, cph, cre]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayimage versions 0.15.1 dated 2025-02-01 and 0.26.1 dated 2026-06-12
rayimage-0.15.1/rayimage/R/run_documentation.R |only rayimage-0.15.1/rayimage/R/save_png.R |only rayimage-0.15.1/rayimage/inst |only rayimage-0.15.1/rayimage/man/add_image_overlay.Rd |only rayimage-0.15.1/rayimage/man/add_title.Rd |only rayimage-0.15.1/rayimage/man/add_vignette.Rd |only rayimage-0.15.1/rayimage/man/run_documentation.Rd |only rayimage-0.15.1/rayimage/man/save_png.Rd |only rayimage-0.26.1/rayimage/DESCRIPTION | 28 rayimage-0.26.1/rayimage/MD5 | 214 ++-- rayimage-0.26.1/rayimage/NAMESPACE | 25 rayimage-0.26.1/rayimage/R/RcppExports.R | 24 rayimage-0.26.1/rayimage/R/add_padding.R | 178 ++- rayimage-0.26.1/rayimage/R/calc_bokeh_size.R | 9 rayimage-0.26.1/rayimage/R/cli_helpers.R |only rayimage-0.26.1/rayimage/R/colorspace_descriptors.R |only rayimage-0.26.1/rayimage/R/colorspace_helpers.R |only rayimage-0.26.1/rayimage/R/convert_color.R | 78 + rayimage-0.26.1/rayimage/R/convert_to_native_raster.R | 44 rayimage-0.26.1/rayimage/R/data.R | 11 rayimage-0.26.1/rayimage/R/flipfunctions.R | 12 rayimage-0.26.1/rayimage/R/generate_2d_disk.R | 37 rayimage-0.26.1/rayimage/R/generate_2d_exponential.R | 44 rayimage-0.26.1/rayimage/R/generate_2d_gaussian.R | 50 rayimage-0.26.1/rayimage/R/get_file_type.R | 55 - rayimage-0.26.1/rayimage/R/get_string_dimensions.R | 26 rayimage-0.26.1/rayimage/R/handle_image_output.R | 8 rayimage-0.26.1/rayimage/R/interpolate_array.R | 62 - rayimage-0.26.1/rayimage/R/linear_png_device.R |only rayimage-0.26.1/rayimage/R/make_vignette_overlay.R | 62 - rayimage-0.26.1/rayimage/R/plot_asp_native_raster.R | 127 +- rayimage-0.26.1/rayimage/R/plot_image.R | 113 +- rayimage-0.26.1/rayimage/R/plot_image_grid.R | 149 +- rayimage-0.26.1/rayimage/R/prepare_native_raster.R |only rayimage-0.26.1/rayimage/R/preview_focus.R | 47 rayimage-0.26.1/rayimage/R/print.R |only rayimage-0.26.1/rayimage/R/ray_read_image.R | 376 +++++-- rayimage-0.26.1/rayimage/R/ray_write_image.R | 159 ++- rayimage-0.26.1/rayimage/R/rayimg.R |only rayimage-0.26.1/rayimage/R/read_image_stb.R |only rayimage-0.26.1/rayimage/R/render_alpha_outline.R |only rayimage-0.26.1/rayimage/R/render_bokeh.R | 146 +- rayimage-0.26.1/rayimage/R/render_bw.R | 54 - rayimage-0.26.1/rayimage/R/render_clamp.R | 76 + rayimage-0.26.1/rayimage/R/render_color_correction.R |only rayimage-0.26.1/rayimage/R/render_convert_colorspace.R |only rayimage-0.26.1/rayimage/R/render_convolution.R | 156 +- rayimage-0.26.1/rayimage/R/render_convolution_fft.R | 187 +-- rayimage-0.26.1/rayimage/R/render_crop.R |only rayimage-0.26.1/rayimage/R/render_distance.R | 16 rayimage-0.26.1/rayimage/R/render_exposure.R |only rayimage-0.26.1/rayimage/R/render_gamma_linear.R |only rayimage-0.26.1/rayimage/R/render_image_overlay.R | 530 +++++++--- rayimage-0.26.1/rayimage/R/render_padding.R |only rayimage-0.26.1/rayimage/R/render_reorient.R | 44 rayimage-0.26.1/rayimage/R/render_resized.R | 135 +- rayimage-0.26.1/rayimage/R/render_stack.R |only rayimage-0.26.1/rayimage/R/render_text_image.R | 273 +++-- rayimage-0.26.1/rayimage/R/render_title.R | 401 ++++--- rayimage-0.26.1/rayimage/R/render_to_display.R |only rayimage-0.26.1/rayimage/R/render_tonemap.R |only rayimage-0.26.1/rayimage/R/render_vibrance.R |only rayimage-0.26.1/rayimage/R/render_vignette.R | 116 -- rayimage-0.26.1/rayimage/R/render_white_balance.R |only rayimage-0.26.1/rayimage/R/rotate_image_array.R |only rayimage-0.26.1/rayimage/data/dragon.rda |binary rayimage-0.26.1/rayimage/data/sunset_image.rda |only rayimage-0.26.1/rayimage/man/add_multi_padding.Rd | 2 rayimage-0.26.1/rayimage/man/add_padding.Rd | 2 rayimage-0.26.1/rayimage/man/apply_color_matrix.Rd |only rayimage-0.26.1/rayimage/man/array_rgb_to_hex_colmajor.Rd |only rayimage-0.26.1/rayimage/man/colorspace_descriptors.Rd |only rayimage-0.26.1/rayimage/man/composite_alpha_outline_image.Rd |only rayimage-0.26.1/rayimage/man/compute_cat_bradford.Rd |only rayimage-0.26.1/rayimage/man/convert_color.Rd | 13 rayimage-0.26.1/rayimage/man/convert_to_native_raster.Rd | 6 rayimage-0.26.1/rayimage/man/dragon.Rd | 4 rayimage-0.26.1/rayimage/man/fill_alpha_gaps.Rd |only rayimage-0.26.1/rayimage/man/find_border_alpha_gaps.Rd |only rayimage-0.26.1/rayimage/man/generate_2d_disk.Rd | 6 rayimage-0.26.1/rayimage/man/generate_2d_exponential.Rd | 6 rayimage-0.26.1/rayimage/man/generate_2d_gaussian.Rd | 6 rayimage-0.26.1/rayimage/man/get_file_type.Rd | 2 rayimage-0.26.1/rayimage/man/get_whitepoint_xyz.Rd |only rayimage-0.26.1/rayimage/man/handle_image_output.Rd | 2 rayimage-0.26.1/rayimage/man/interpolate_array.Rd | 2 rayimage-0.26.1/rayimage/man/linear_png_device.Rd |only rayimage-0.26.1/rayimage/man/make_colorspace.Rd |only rayimage-0.26.1/rayimage/man/make_rgb_xyz_matrices.Rd |only rayimage-0.26.1/rayimage/man/offset_alpha.Rd |only rayimage-0.26.1/rayimage/man/plot_asp_native_raster.Rd | 3 rayimage-0.26.1/rayimage/man/plot_image.Rd | 20 rayimage-0.26.1/rayimage/man/plot_image_grid.Rd | 14 rayimage-0.26.1/rayimage/man/preview_focus.Rd | 2 rayimage-0.26.1/rayimage/man/print.rayimg.Rd |only rayimage-0.26.1/rayimage/man/ray_read_image.Rd | 72 + rayimage-0.26.1/rayimage/man/ray_write_image.Rd | 23 rayimage-0.26.1/rayimage/man/rayimg.Rd |only rayimage-0.26.1/rayimage/man/rayimg_composite_checker.Rd |only rayimage-0.26.1/rayimage/man/rayimg_vertical_ellipsis.Rd |only rayimage-0.26.1/rayimage/man/render_alpha_outline.Rd |only rayimage-0.26.1/rayimage/man/render_bokeh.Rd | 33 rayimage-0.26.1/rayimage/man/render_boolean_distance.Rd | 8 rayimage-0.26.1/rayimage/man/render_bw.Rd | 8 rayimage-0.26.1/rayimage/man/render_clamp.Rd | 29 rayimage-0.26.1/rayimage/man/render_color_correction.Rd |only rayimage-0.26.1/rayimage/man/render_convert_colorspace.Rd |only rayimage-0.26.1/rayimage/man/render_convolution.Rd | 36 rayimage-0.26.1/rayimage/man/render_convolution_fft.Rd | 42 rayimage-0.26.1/rayimage/man/render_crop.Rd |only rayimage-0.26.1/rayimage/man/render_exposure.Rd |only rayimage-0.26.1/rayimage/man/render_gamma_linear.Rd |only rayimage-0.26.1/rayimage/man/render_image_overlay.Rd | 72 + rayimage-0.26.1/rayimage/man/render_padding.Rd |only rayimage-0.26.1/rayimage/man/render_reorient.Rd | 12 rayimage-0.26.1/rayimage/man/render_resized.Rd | 16 rayimage-0.26.1/rayimage/man/render_sprite_overlay.Rd |only rayimage-0.26.1/rayimage/man/render_stack.Rd |only rayimage-0.26.1/rayimage/man/render_text_image.Rd | 32 rayimage-0.26.1/rayimage/man/render_title.Rd | 18 rayimage-0.26.1/rayimage/man/render_to_display.Rd |only rayimage-0.26.1/rayimage/man/render_tonemap.Rd |only rayimage-0.26.1/rayimage/man/render_vibrance.Rd |only rayimage-0.26.1/rayimage/man/render_vignette.Rd | 30 rayimage-0.26.1/rayimage/man/render_white_balance.Rd |only rayimage-0.26.1/rayimage/man/rgb_to_hex.Rd |only rayimage-0.26.1/rayimage/man/rotate_image_array.Rd |only rayimage-0.26.1/rayimage/man/sunset_image.Rd |only rayimage-0.26.1/rayimage/man/to_linear.Rd |only rayimage-0.26.1/rayimage/man/to_srgb.Rd |only rayimage-0.26.1/rayimage/src/Makevars | 2 rayimage-0.26.1/rayimage/src/RcppExports.cpp | 86 + rayimage-0.26.1/rayimage/src/dng_io.cpp |only rayimage-0.26.1/rayimage/src/load_image_stb.cpp |only rayimage-0.26.1/rayimage/src/pointspread.cpp | 23 rayimage-0.26.1/rayimage/tests |only 136 files changed, 3038 insertions(+), 1666 deletions(-)
Title: Sparse Principal Component Analysis with Multiple Principal
Components
Description: Implements an algorithm for computing multiple sparse principal
components of a dataset. The method is based on Cory-Wright and Pauphilet
"Sparse PCA with Multiple Principal Components" (2026)
<doi:10.48550/arXiv.2209.14790>. The algorithm uses an iterative deflation
heuristic with a truncated power method applied at each iteration to compute
sparse principal components with controlled sparsity.
Author: Ryan Cory-Wright [aut, cph] ,
Jean Pauphilet [aut, cre, cph]
Maintainer: Jean Pauphilet <jpauphilet@london.edu>
Diff between msPCA versions 0.4.0 dated 2026-05-22 and 0.4.1 dated 2026-06-12
DESCRIPTION | 10 - MD5 | 28 ++-- NEWS.md | 7 + R/main.R | 50 ++----- README.md | 204 +++++++++++++++++++++---------- build |only inst/CITATION |only inst/doc |only man/feasibility_violation_off.Rd | 3 man/fraction_variance_explained.Rd | 3 man/fraction_variance_explained_perPC.Rd | 2 man/mspca.Rd | 1 man/print_mspca.Rd | 9 - man/tpm.Rd | 1 man/variance_explained_perPC.Rd | 2 vignettes |only 16 files changed, 201 insertions(+), 119 deletions(-)
Title: Estimation and Diagnostics for Many-Facet Measurement Models
Description: Native R implementation of many-facet ordered-response
measurement models with arbitrary facet counts, rating-scale and
partial-credit parameterizations, a bounded generalized partial-credit
extension, and both marginal and joint maximum likelihood estimation.
The package provides a fit / diagnose / report pipeline covering
anchoring, linking, bias and differential-functioning screening, and
publication-oriented reporting summaries, with reproducibility manifests
for replay. See 'Andrich'
(1978) <doi:10.1007/BF02293814>, 'Masters' (1982)
<doi:10.1007/BF02296272>, and 'Muraki' (1992)
<doi:10.1177/014662169201600206> for the underlying ordered-response
models.
Author: Ryuya Komuro [aut, cre, cph]
Maintainer: Ryuya Komuro <ryuya.komuro.c4@tohoku.ac.jp>
Diff between mfrmr versions 0.2.0 dated 2026-05-16 and 0.2.1 dated 2026-06-12
DESCRIPTION | 11 MD5 | 386 +- NAMESPACE | 44 NEWS.md | 445 ++ R/api-advanced.R | 119 R/api-estimation.R | 32 R/api-export-bundles.R | 122 R/api-facet-equivalence.R | 7 R/api-hierarchical-audit.R | 16 R/api-methods.R | 94 R/api-plotting-anchor-qc.R | 7 R/api-plotting-extras.R | 27 R/api-plotting-fit-family.R | 51 R/api-plotting-screening.R | 12 R/api-plotting-secondary.R | 110 R/api-plotting.R | 57 R/api-prediction.R | 46 R/api-reference-benchmark.R | 2 R/api-reporting-checklist.R | 33 R/api-reports.R | 1883 ++++++++++ R/api-resampling.R |only R/api-response-time.R |only R/api-results.R |only R/api-shrinkage.R | 95 R/api-simulation-future-branch.R | 14 R/api-simulation-spec.R | 511 ++ R/api-simulation.R | 3316 +++++++++++++++++- R/api-tables.R | 101 R/api-viewer.R |only R/help_compatibility_layer.R | 2 R/help_gpcm_scope.R | 517 ++ R/help_reporting_and_apa.R | 48 R/help_reports_and_tables.R | 596 +++ R/help_visual_diagnostics.R | 311 + R/help_workflow_methods.R | 67 R/mfrm_core.R | 559 ++- R/mfrmr-package.R | 86 R/reporting.R | 138 README.md | 986 ++++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/mfrmr-facets-migration.Rmd | 8 inst/doc/mfrmr-facets-migration.html | 26 inst/doc/mfrmr-gpcm-scope.R | 4 inst/doc/mfrmr-gpcm-scope.Rmd | 151 inst/doc/mfrmr-gpcm-scope.html | 181 inst/doc/mfrmr-mml-and-marginal-fit.Rmd | 33 inst/doc/mfrmr-mml-and-marginal-fit.html | 37 inst/doc/mfrmr-reporting-and-apa.R | 1 inst/doc/mfrmr-reporting-and-apa.Rmd | 7 inst/doc/mfrmr-reporting-and-apa.html | 9 inst/doc/mfrmr-visual-diagnostics.R | 45 inst/doc/mfrmr-visual-diagnostics.Rmd | 87 inst/doc/mfrmr-visual-diagnostics.html | 92 inst/doc/mfrmr-workflow.R | 30 inst/doc/mfrmr-workflow.Rmd | 30 inst/doc/mfrmr-workflow.html | 170 inst/validation/README.md | 45 inst/validation/gpcm-post-0.2.1-roadmap.md |only inst/validation/recovery-validation.R | 485 ++ inst/validation/release-evidence-checklist-0.2.1.csv |only inst/validation/release-evidence-map-0.2.1.md |only inst/validation/release-readiness.R | 357 + man/analyze_dff.Rd | 12 man/analyze_facet_equivalence.Rd | 3 man/analyze_hierarchical_structure.Rd | 3 man/assess_mfrm_recovery.Rd | 86 man/build_apa_outputs.Rd | 9 man/build_conquest_overlap_bundle.Rd | 2 man/build_equating_chain.Rd | 2 man/build_mfrm_manifest.Rd | 10 man/build_mfrm_network_review.Rd |only man/build_mfrm_replay_script.Rd | 10 man/build_mfrm_resampling_spec.Rd |only man/build_mfrm_sim_spec.Rd | 59 man/build_peer_review_design_review.Rd |only man/build_peer_review_sim_spec.Rd |only man/build_summary_table_bundle.Rd | 50 man/build_visual_summaries.Rd | 7 man/compute_facet_icc.Rd | 3 man/diagnose_mfrm.Rd | 11 man/dif_interaction_table.Rd | 10 man/dif_report.Rd | 12 man/draw_mfrm_resamples.Rd |only man/evaluate_mfrm_design.Rd | 59 man/evaluate_mfrm_diagnostic_screening.Rd | 53 man/evaluate_mfrm_recovery.Rd | 38 man/evaluate_mfrm_signal_detection.Rd | 35 man/export_mfrm_bundle.Rd | 15 man/export_mfrm_results.Rd |only man/export_summary_appendix.Rd | 11 man/extract_mfrm_sim_spec.Rd | 5 man/facets_fit_df_guide.Rd | 11 man/facets_fit_review.Rd | 9 man/facets_output_contract_review.Rd | 11 man/facets_output_file_bundle.Rd | 26 man/fair_average_table.Rd | 2 man/fit_measures_table.Rd | 2 man/fit_mfrm.Rd | 21 man/gpcm_capability_matrix.Rd | 52 man/gpcm_runtime_guard_coverage.Rd |only man/gpcm_score_side_contract.Rd |only man/launch_mfrmr_viewer.Rd |only man/mfrm_report.Rd |only man/mfrm_results.Rd |only man/mfrm_results_interactive.Rd |only man/mfrmr-package.Rd | 82 man/mfrmr_compatibility_layer.Rd | 2 man/mfrmr_interval_guide.Rd |only man/mfrmr_output_guide.Rd | 74 man/mfrmr_reporting_and_apa.Rd | 48 man/mfrmr_reports_and_tables.Rd | 20 man/mfrmr_visual_diagnostics.Rd | 24 man/mfrmr_workflow_methods.Rd | 67 man/normalize_conquest_overlap_files.Rd | 2 man/plot.mfrm_bundle.Rd | 3 man/plot.mfrm_design_evaluation.Rd | 7 man/plot.mfrm_diagnostic_screening.Rd |only man/plot.mfrm_facet_nesting.Rd | 2 man/plot.mfrm_facet_sample_review.Rd | 9 man/plot.mfrm_fit.Rd | 16 man/plot_anchor_drift.Rd | 7 man/plot_apa_figure_one.Rd | 5 man/plot_bias_interaction.Rd | 7 man/plot_bubble.Rd | 2 man/plot_data_components.Rd | 10 man/plot_dif_summary.Rd | 5 man/plot_displacement.Rd | 7 man/plot_facet_equivalence.Rd | 3 man/plot_facets_chisq.Rd | 4 man/plot_fair_average.Rd | 7 man/plot_guttman_scalogram.Rd | 2 man/plot_interrater_agreement.Rd | 4 man/plot_local_dependence_heatmap.Rd | 2 man/plot_marginal_fit.Rd | 2 man/plot_marginal_pairwise.Rd | 4 man/plot_qc_dashboard.Rd | 13 man/plot_rater_agreement_heatmap.Rd | 2 man/plot_rater_severity_profile.Rd | 5 man/plot_rater_trajectory.Rd | 5 man/plot_reliability_snapshot.Rd | 2 man/plot_residual_matrix.Rd | 2 man/plot_residual_pca.Rd | 4 man/plot_residual_qq.Rd | 2 man/plot_response_time_review.Rd |only man/plot_shrinkage_funnel.Rd | 15 man/plot_threshold_ladder.Rd | 6 man/plot_unexpected.Rd | 4 man/plot_wright_unified.Rd | 7 man/precision_review_report.Rd | 12 man/predict_mfrm_population.Rd | 16 man/reference_case_review.Rd | 2 man/reporting_checklist.Rd | 4 man/response_time_review.Rd |only man/review_conquest_overlap.Rd | 2 man/run_qc_pipeline.Rd | 8 man/simulate_mfrm_data.Rd | 35 man/summary.mfrm_design_evaluation.Rd | 2 man/summary.mfrm_diagnostic_screening.Rd |only man/summary.mfrm_network_review.Rd |only man/summary.mfrm_peer_review_design_review.Rd |only man/summary.mfrm_population_prediction.Rd | 1 man/summary.mfrm_response_time_review.Rd |only man/summary.mfrm_signal_detection.Rd | 1 man/visual_reporting_template.Rd | 4 tests/testthat/test-anchor-equating.R | 17 tests/testthat/test-api-coverage-gaps.R | 2 tests/testthat/test-api-final-coverage.R | 2 tests/testthat/test-core-coverage-gaps.R | 8 tests/testthat/test-core-coverage.R | 2 tests/testthat/test-core-workflow.R | 4 tests/testthat/test-coverage-push-95.R | 4 tests/testthat/test-diagnostic-screening-validation.R | 130 tests/testthat/test-documentation-terminology.R | 194 - tests/testthat/test-estimation-core.R | 4 tests/testthat/test-export-bundles.R | 480 ++ tests/testthat/test-facets-output-contract-review.R | 2 tests/testthat/test-final-coverage-boost.R | 9 tests/testthat/test-gpcm-capability-matrix.R | 585 +++ tests/testthat/test-gpcm-verification.R | 21 tests/testthat/test-mfrm-results.R |only tests/testthat/test-namespace-contract.R | 42 tests/testthat/test-output-guide.R | 140 tests/testthat/test-output-stability.R | 37 tests/testthat/test-peer-review-simulation.R |only tests/testthat/test-plotting-extras.R | 3 tests/testthat/test-plotting-secondary.R | 15 tests/testthat/test-qc-pipeline.R | 2 tests/testthat/test-recovery-simulation.R | 251 + tests/testthat/test-recovery-validation-protocol.R | 182 tests/testthat/test-reference-benchmark.R | 2 tests/testthat/test-release-readiness-protocol.R | 116 tests/testthat/test-remaining-coverage.R | 2 tests/testthat/test-report-functions.R | 101 tests/testthat/test-reporting-checklist.R | 6 tests/testthat/test-reporting-coverage.R | 2 tests/testthat/test-reporting-gaps.R | 2 tests/testthat/test-resampling-validation.R |only tests/testthat/test-response-time-review.R |only tests/testthat/test-shrinkage.R | 10 tests/testthat/test-simulation-design.R | 110 tests/testthat/test-sparse-simulation.R |only tests/testthat/test-summary-table-bundle.R | 555 ++- tests/testthat/test-visual-reporting-template.R | 91 vignettes/mfrmr-facets-migration.Rmd | 8 vignettes/mfrmr-gpcm-scope.Rmd | 151 vignettes/mfrmr-mml-and-marginal-fit.Rmd | 33 vignettes/mfrmr-reporting-and-apa.Rmd | 7 vignettes/mfrmr-visual-diagnostics.Rmd | 87 vignettes/mfrmr-workflow.Rmd | 30 210 files changed, 15750 insertions(+), 1568 deletions(-)
Title: Fit 'TabNet' Models for Classification and Regression
Description: Implements the 'TabNet' model by Sercan O. Arik et al. (2019)
<doi:10.48550/arXiv.1908.07442> with 'Coherent Hierarchical Multi-label
Classification Networks' by Giunchiglia et al. <doi:10.48550/arXiv.2010.10151> and
provides a consistent interface for fitting and creating predictions.
It's also fully compatible with the 'tidymodels' ecosystem.
Author: Daniel Falbel [aut],
RStudio [cph],
Christophe Regouby [cre, ctb],
Egill Fridgeirsson [ctb],
Philipp Haarmeyer [ctb],
Sven Verweij [ctb]
Maintainer: Christophe Regouby <christophe.regouby@free.fr>
Diff between tabnet versions 0.8.0 dated 2026-01-31 and 0.9.0 dated 2026-06-12
tabnet-0.8.0/tabnet/R/explain.R |only tabnet-0.8.0/tabnet/R/model.R |only tabnet-0.8.0/tabnet/R/pretraining.R |only tabnet-0.8.0/tabnet/R/tab-network.R |only tabnet-0.8.0/tabnet/tests/testthat/_snaps/pretraining.md |only tabnet-0.8.0/tabnet/tests/testthat/test-explain.R |only tabnet-0.8.0/tabnet/tests/testthat/test-model.R |only tabnet-0.8.0/tabnet/tests/testthat/test-pretraining.R |only tabnet-0.8.0/tabnet/tests/testthat/test_translations.R |only tabnet-0.9.0/tabnet/DESCRIPTION | 12 tabnet-0.9.0/tabnet/MD5 | 111 ++- tabnet-0.9.0/tabnet/NAMESPACE | 21 tabnet-0.9.0/tabnet/NEWS.md | 12 tabnet-0.9.0/tabnet/R/hardhat.R | 205 ++++++- tabnet-0.9.0/tabnet/R/loss.R | 281 +++++++++- tabnet-0.9.0/tabnet/R/model_explain.R |only tabnet-0.9.0/tabnet/R/model_pretraining.R |only tabnet-0.9.0/tabnet/R/model_training.R |only tabnet-0.9.0/tabnet/R/parsnip.R | 2 tabnet-0.9.0/tabnet/R/plot.R | 2 tabnet-0.9.0/tabnet/R/tabnet_network.R |only tabnet-0.9.0/tabnet/R/utils-pipe.R | 4 tabnet-0.9.0/tabnet/R/utils.R | 14 tabnet-0.9.0/tabnet/README.md | 20 tabnet-0.9.0/tabnet/build/partial.rdb |only tabnet-0.9.0/tabnet/inst/WORDLIST | 6 tabnet-0.9.0/tabnet/inst/doc/Hierarchical_classification.R | 10 tabnet-0.9.0/tabnet/inst/doc/Hierarchical_classification.Rmd | 37 - tabnet-0.9.0/tabnet/inst/doc/Hierarchical_classification.html | 76 +- tabnet-0.9.0/tabnet/inst/doc/Missing_data_predictors.html | 4 tabnet-0.9.0/tabnet/inst/doc/interpretation.html | 4 tabnet-0.9.0/tabnet/inst/doc/selfsupervised_training.R | 10 tabnet-0.9.0/tabnet/inst/doc/selfsupervised_training.Rmd | 10 tabnet-0.9.0/tabnet/inst/doc/selfsupervised_training.html | 14 tabnet-0.9.0/tabnet/man/build_ancestor_matrix_from_outcomes.Rd |only tabnet-0.9.0/tabnet/man/figures/README-model-explain-1.png |binary tabnet-0.9.0/tabnet/man/figures/README-model-fit-1.png |binary tabnet-0.9.0/tabnet/man/figures/README-step-explain-1.png |binary tabnet-0.9.0/tabnet/man/figures/README-step-pretrain-1.png |binary tabnet-0.9.0/tabnet/man/get_constr_output.Rd |only tabnet-0.9.0/tabnet/man/nn_mc_loss.Rd |only tabnet-0.9.0/tabnet/man/nnf_mc_loss.Rd |only tabnet-0.9.0/tabnet/man/nnf_multilabel_one_hot.Rd |only tabnet-0.9.0/tabnet/man/predict.tabnet_fit.Rd |only tabnet-0.9.0/tabnet/man/reexports.Rd |only tabnet-0.9.0/tabnet/man/tabnet-package.Rd |only tabnet-0.9.0/tabnet/man/tabnet_config.Rd | 2 tabnet-0.9.0/tabnet/man/tabnet_explain.Rd | 2 tabnet-0.9.0/tabnet/man/tabnet_nn.Rd | 2 tabnet-0.9.0/tabnet/man/tabnet_pretrain.Rd | 2 tabnet-0.9.0/tabnet/po/R-fr.po | 151 +++-- tabnet-0.9.0/tabnet/po/R-tabnet.pot | 114 ++-- tabnet-0.9.0/tabnet/tests/testthat/Rplots.pdf |binary tabnet-0.9.0/tabnet/tests/testthat/_snaps/model_pretraining.md |only tabnet-0.9.0/tabnet/tests/testthat/helper-tensor.R | 9 tabnet-0.9.0/tabnet/tests/testthat/setup.R | 6 tabnet-0.9.0/tabnet/tests/testthat/test-hardhat_hierarchical.R | 111 --- tabnet-0.9.0/tabnet/tests/testthat/test-hardhat_interfaces.R | 12 tabnet-0.9.0/tabnet/tests/testthat/test-hardhat_multi-outcome.R | 23 tabnet-0.9.0/tabnet/tests/testthat/test-hardhat_scenarios.R | 36 + tabnet-0.9.0/tabnet/tests/testthat/test-hierarchical_utils.R |only tabnet-0.9.0/tabnet/tests/testthat/test-loss.R | 189 ++++++ tabnet-0.9.0/tabnet/tests/testthat/test-model_explain.R |only tabnet-0.9.0/tabnet/tests/testthat/test-model_pretraining.R |only tabnet-0.9.0/tabnet/tests/testthat/test-model_training.R |only tabnet-0.9.0/tabnet/tests/testthat/test-parsnip.R | 11 tabnet-0.9.0/tabnet/tests/testthat/test-translations.R |only tabnet-0.9.0/tabnet/tools |only tabnet-0.9.0/tabnet/vignettes/Hierarchical_classification.Rmd | 37 - tabnet-0.9.0/tabnet/vignettes/selfsupervised_training.Rmd | 10 70 files changed, 1190 insertions(+), 382 deletions(-)
Title: Bayesian Estimation of Multivariate Threshold Autoregressive
Models
Description: Estimation, inference and forecasting using the Bayesian approach for multivariate threshold autoregressive (TAR) models in which the distribution used to describe the noise process belongs to the class of Gaussian variance mixtures.
Author: Luis Hernando Vanegas [aut, cre],
Sergio Alejandro Calderon [aut],
Luz Marina Rondon [aut]
Maintainer: Luis Hernando Vanegas <lhvanegasp@unal.edu.co>
Diff between mtarm versions 0.1.8 dated 2026-01-11 and 0.1.9 dated 2026-06-12
mtarm-0.1.8/mtarm/man/geweke.diagTAR.Rd |only mtarm-0.1.8/mtarm/man/geweke.plotTAR.Rd |only mtarm-0.1.8/mtarm/man/out.of.sample.Rd |only mtarm-0.1.9/mtarm/DESCRIPTION | 11 mtarm-0.1.9/mtarm/MD5 | 54 +- mtarm-0.1.9/mtarm/NAMESPACE | 15 mtarm-0.1.9/mtarm/R/bayesians.R | 514 ++++++++++---------- mtarm-0.1.9/mtarm/R/data.R | 20 mtarm-0.1.9/mtarm/R/estimation.R | 64 +- mtarm-0.1.9/mtarm/R/extractors.R | 108 ++-- mtarm-0.1.9/mtarm/R/forecasting.R | 607 +++++++++++++++--------- mtarm-0.1.9/mtarm/R/simulation.R | 190 ++++--- mtarm-0.1.9/mtarm/R/wrapperfunctions.R | 387 ++++++++++++--- mtarm-0.1.9/mtarm/README.md |only mtarm-0.1.9/mtarm/build |only mtarm-0.1.9/mtarm/data/US.returns.rda |binary mtarm-0.1.9/mtarm/inst |only mtarm-0.1.9/mtarm/man/DIC.mtar.Rd | 48 + mtarm-0.1.9/mtarm/man/HPDinterval.mtar.Rd | 34 + mtarm-0.1.9/mtarm/man/US.returns.Rd | 14 mtarm-0.1.9/mtarm/man/WAIC.mtar.Rd | 48 + mtarm-0.1.9/mtarm/man/as.mcmc.mtar.Rd | 28 - mtarm-0.1.9/mtarm/man/effectiveSize_TAR.Rd |only mtarm-0.1.9/mtarm/man/geweke_diagTAR.Rd |only mtarm-0.1.9/mtarm/man/geweke_plotTAR.Rd |only mtarm-0.1.9/mtarm/man/mtar.Rd | 40 + mtarm-0.1.9/mtarm/man/mtar_grid.Rd | 42 + mtarm-0.1.9/mtarm/man/out_of_sample.Rd |only mtarm-0.1.9/mtarm/man/out_of_sample.listmtar.Rd |only mtarm-0.1.9/mtarm/man/out_of_sample.mtar.Rd |only mtarm-0.1.9/mtarm/man/predict.mtar.Rd | 68 +- mtarm-0.1.9/mtarm/tests |only mtarm-0.1.9/mtarm/vignettes |only 33 files changed, 1475 insertions(+), 817 deletions(-)
Title: Subject-Level Analysis Using 'metalite'
Description: Analyzes subject-level data in clinical trials using the 'metalite'
data structure. The package simplifies the workflow to create
production-ready tables, listings, and figures discussed in the
subject-level analysis chapters of
"R for Clinical Study Reports and Submission"
by Zhang et al. (2022) <https://r4csr.org/>.
Author: Yujie Zhao [aut, cre],
Benjamin Wang [aut],
Hiroaki Fukuda [aut],
PoYao Niu [aut],
Nan Xiao [aut],
Jeetener Chauhan [ctb],
Li Ma [ctb],
Chen Wang [ctb],
Merck Sharp & Dohme Corp [cph]
Maintainer: Yujie Zhao <yujie.zhao@merck.com>
Diff between metalite.sl versions 0.1.1 dated 2025-05-08 and 0.1.2 dated 2026-06-12
DESCRIPTION | 23 MD5 | 132 ++- NEWS.md | 9 R/collect.R | 13 R/data.R |only R/format_base_char_subgroup.R | 9 R/format_exp_duration.R | 9 R/format_sl_summary.R | 10 R/meta_sl.R | 27 R/plotly_exp_duration.R | 48 - R/prepare_base_char_subgroup.R | 13 R/prepare_sl_summary.R | 9 R/react_base_char.R | 117 +++ R/react_disposition.R | 35 R/react_subgroup_table.R | 11 R/rtf_base_char_subgroup.R | 19 R/rtf_sl_summary.R | 20 R/utils.R | 7 build/vignette.rds |binary data |only inst/doc/baseline-character.html | 13 inst/doc/disposition.R | 25 inst/doc/disposition.Rmd | 25 inst/doc/disposition.html | 355 ++++------ inst/doc/exp_duration.html | 9 inst/doc/exposure-duration-histogram.R |only inst/doc/exposure-duration-histogram.Rmd |only inst/doc/exposure-duration-histogram.html |only inst/doc/interactive-baseline.R | 27 inst/doc/interactive-baseline.Rmd | 35 inst/doc/interactive-baseline.html | 67 + inst/doc/interactive-disposition.R | 56 - inst/doc/interactive-disposition.Rmd | 56 - inst/doc/interactive-disposition.html | 181 +---- inst/doc/metalite.sl.html | 9 inst/doc/trt_compliance.html | 7 man/metalite_sl_adae.Rd |only man/metalite_sl_adexsum.Rd |only man/metalite_sl_adsl.Rd |only man/plotly_exp_duration.Rd | 32 man/react_base_char.Rd | 8 man/react_disposition.Rd | 3 tests/testthat/_snaps |only tests/testthat/helper-rtf-snapshot.R |only tests/testthat/rtf |only tests/testthat/test-independent-testing-disposition.R | 24 tests/testthat/test-independent-testing-plotly_exp_duration.R | 8 tests/testthat/test-independent-testing-prepare_exp_duration.R | 4 tests/testthat/test-independent-testing-react_disposition.R | 12 tests/testthat/test-independent-testing-rtf_base_char_subgroup.R | 76 -- tests/testthat/test-independent-testing-rtf_exp_duration.R | 27 tests/testthat/test-independent-testing-trt_compliance.R | 24 vignettes/disposition.Rmd | 25 vignettes/exposure-duration-histogram.Rmd |only vignettes/interactive-baseline.Rmd | 35 vignettes/interactive-disposition.Rmd | 56 - vignettes/outtable/base0char.rtf | 16 vignettes/outtable/base0charsubgroup.rtf | 16 vignettes/outtable/disposition.rtf | 310 +++----- vignettes/outtable/exp0duration.rtf | 16 vignettes/outtable/treatment0compliance.rtf | 16 vignettes/pdf/disposition.pdf |binary vignettes/pdf/exposure0histogram.pdf |only 63 files changed, 982 insertions(+), 1102 deletions(-)
Title: 'JDemetra+' Quality Report Generator
Description: Tool for generating quality reports from cruncher outputs
(and calculating series scores). The latest version of the cruncher
can be downloaded here:
<https://github.com/jdemetra/jwsacruncher/releases>.
Author: Tanguy Barthelemy [aut, cre, art],
Eulalie Delaune [aut],
Alain Quartier-la-Tente [aut] ,
Institut national de la statistique et des etudes economiques [cph]
,
Anna Smyk [aut]
Maintainer: Tanguy Barthelemy <tanguy.barthelemy@insee.fr>
Diff between JDCruncheR versions 0.3.6 dated 2025-07-24 and 0.4.0 dated 2026-06-12
JDCruncheR-0.3.6/JDCruncheR/R/QR_export.R |only JDCruncheR-0.3.6/JDCruncheR/inst/extdata/WS/ws_ipi |only JDCruncheR-0.3.6/JDCruncheR/inst/extdata/WS/ws_ipi.xml |only JDCruncheR-0.3.6/JDCruncheR/inst/extdata/data/IPI_nace4.csv |only JDCruncheR-0.3.6/JDCruncheR/inst/extdata/data/IPI_nace4_09_2020.csv |only JDCruncheR-0.3.6/JDCruncheR/inst/extdata/data/IPI_nace4_09_2021.csv |only JDCruncheR-0.3.6/JDCruncheR/inst/extdata/data/world.ods |only JDCruncheR-0.3.6/JDCruncheR/inst/extdata/data/world.xlsx |only JDCruncheR-0.3.6/JDCruncheR/man/export_xlsx.QR_matrix.Rd |only JDCruncheR-0.3.6/JDCruncheR/man/export_xlsx.Rd |only JDCruncheR-0.3.6/JDCruncheR/man/export_xlsx.mQR_matrix.Rd |only JDCruncheR-0.3.6/JDCruncheR/man/fr-export_xlsx.QR_matrix.Rd |only JDCruncheR-0.3.6/JDCruncheR/man/fr-export_xlsx.mQR_matrix.Rd |only JDCruncheR-0.4.0/JDCruncheR/DESCRIPTION | 21 JDCruncheR-0.4.0/JDCruncheR/MD5 | 128 JDCruncheR-0.4.0/JDCruncheR/NAMESPACE | 126 JDCruncheR-0.4.0/JDCruncheR/NEWS.md | 356 JDCruncheR-0.4.0/JDCruncheR/R/JVS_classes.R |only JDCruncheR-0.4.0/JDCruncheR/R/QR_functions.R | 2742 - JDCruncheR-0.4.0/JDCruncheR/R/QR_matrix_classes.R | 760 JDCruncheR-0.4.0/JDCruncheR/R/deprecated.R |only JDCruncheR-0.4.0/JDCruncheR/R/export.R |only JDCruncheR-0.4.0/JDCruncheR/R/extractQR.R | 1204 JDCruncheR-0.4.0/JDCruncheR/R/extract_JVS.R |only JDCruncheR-0.4.0/JDCruncheR/R/extraction.R |only JDCruncheR-0.4.0/JDCruncheR/R/reading.R |only JDCruncheR-0.4.0/JDCruncheR/R/thresholds.R | 238 JDCruncheR-0.4.0/JDCruncheR/R/zzz.R | 10 JDCruncheR-0.4.0/JDCruncheR/README.md | 990 JDCruncheR-0.4.0/JDCruncheR/build |only JDCruncheR-0.4.0/JDCruncheR/inst/doc |only JDCruncheR-0.4.0/JDCruncheR/inst/extdata/WS/WS_world |only JDCruncheR-0.4.0/JDCruncheR/inst/extdata/WS/WS_world.xml |only JDCruncheR-0.4.0/JDCruncheR/inst/extdata/data/world.csv |only JDCruncheR-0.4.0/JDCruncheR/man/JDCruncheR-package.Rd | 8 JDCruncheR-0.4.0/JDCruncheR/man/JVS_matrix.Rd |only JDCruncheR-0.4.0/JDCruncheR/man/QR_matrix.Rd | 124 JDCruncheR-0.4.0/JDCruncheR/man/QR_var_manipulation.Rd | 122 JDCruncheR-0.4.0/JDCruncheR/man/add_indicator.Rd | 102 JDCruncheR-0.4.0/JDCruncheR/man/compute_score.Rd | 284 JDCruncheR-0.4.0/JDCruncheR/man/deprecated-JDCruncheR.Rd |only JDCruncheR-0.4.0/JDCruncheR/man/extract_JVS.Rd |only JDCruncheR-0.4.0/JDCruncheR/man/extract_QR.Rd | 199 JDCruncheR-0.4.0/JDCruncheR/man/extract_score.Rd | 130 JDCruncheR-0.4.0/JDCruncheR/man/figures/logo.svg |23182 +++++----- JDCruncheR-0.4.0/JDCruncheR/man/fr-QR_matrix.Rd | 110 JDCruncheR-0.4.0/JDCruncheR/man/fr-add_indicator.Rd | 88 JDCruncheR-0.4.0/JDCruncheR/man/fr-compute_score.Rd | 252 JDCruncheR-0.4.0/JDCruncheR/man/fr-extract_QR.Rd | 176 JDCruncheR-0.4.0/JDCruncheR/man/fr-extract_score.Rd | 116 JDCruncheR-0.4.0/JDCruncheR/man/fr-print.QR_matrix.Rd | 58 JDCruncheR-0.4.0/JDCruncheR/man/fr-rbind.QR_matrix.Rd | 86 JDCruncheR-0.4.0/JDCruncheR/man/fr-recode_indicator_num.Rd | 58 JDCruncheR-0.4.0/JDCruncheR/man/fr-remove_indicators.Rd | 98 JDCruncheR-0.4.0/JDCruncheR/man/fr-sort.QR_matrix.Rd | 96 JDCruncheR-0.4.0/JDCruncheR/man/fr-weighted_score.Rd | 86 JDCruncheR-0.4.0/JDCruncheR/man/fr-write.QR_matrix.Rd |only JDCruncheR-0.4.0/JDCruncheR/man/fr-write.mQR_matrix.Rd |only JDCruncheR-0.4.0/JDCruncheR/man/print.QR_matrix.Rd | 74 JDCruncheR-0.4.0/JDCruncheR/man/rbind.QR_matrix.Rd | 113 JDCruncheR-0.4.0/JDCruncheR/man/recode_indicator_num.Rd | 88 JDCruncheR-0.4.0/JDCruncheR/man/sort.Rd | 129 JDCruncheR-0.4.0/JDCruncheR/man/weighted_score.Rd | 111 JDCruncheR-0.4.0/JDCruncheR/man/write.JVS_matrix.Rd |only JDCruncheR-0.4.0/JDCruncheR/man/write.QR_matrix.Rd |only JDCruncheR-0.4.0/JDCruncheR/man/write.Rd |only JDCruncheR-0.4.0/JDCruncheR/man/write.mQR_matrix.Rd |only JDCruncheR-0.4.0/JDCruncheR/tests/testthat.R | 24 JDCruncheR-0.4.0/JDCruncheR/tests/testthat/data/demetra_m1.csv | 28 JDCruncheR-0.4.0/JDCruncheR/tests/testthat/data/demetra_m2.csv | 28 JDCruncheR-0.4.0/JDCruncheR/tests/testthat/data/demetra_m3.csv | 41 JDCruncheR-0.4.0/JDCruncheR/tests/testthat/test-extractQR.R | 55 JDCruncheR-0.4.0/JDCruncheR/vignettes |only 73 files changed, 15978 insertions(+), 16663 deletions(-)
Title: Interactive Box Plot
Description: Interactive box plot using 'plotly' for clinical trial analysis.
Author: Yujie Zhao [aut, cre],
Benjamin Wang [aut],
Yilong Zhang [ctb],
Nan Xiao [ctb],
Hiroaki Fukuda [ctb],
Sarad Nepal [ctb],
Madhusudhan Ginnaram [ctb],
Venkatesh Burla [ctb],
Merck Sharp & Dohme Corp [cph]
Maintainer: Yujie Zhao <yujie.zhao@merck.com>
Diff between boxly versions 0.1.1 dated 2023-10-23 and 0.1.2 dated 2026-06-12
DESCRIPTION | 18 +-- MD5 | 34 +++--- NEWS.md | 9 + R/boxly.R | 49 +++++++-- R/meta_boxly.R | 15 +- R/prepare_boxly.R | 84 ++++++++++++---- README.md | 18 +++ build/vignette.rds |binary inst/doc/boxly-cran.R | 24 ++-- inst/doc/boxly-cran.html | 23 ++-- inst/doc/hover-label.R |only inst/doc/hover-label.Rmd |only inst/doc/hover-label.html |only man/boxly.Rd | 5 man/prepare_boxly.Rd | 14 ++ tests/testthat.R | 8 - tests/testthat/test-independant-testing-prepare_boxly.R | 21 ++-- tests/testthat/test-independent-testing-boxly.R | 30 +++-- tests/testthat/test-independent-testing-meta_boxly.R | 16 +-- vignettes/hover-label.Rmd |only 20 files changed, 248 insertions(+), 120 deletions(-)
Title: ADaM in R Asset Library - Ophthalmology
Description: Aids the programming of Clinical Data Standards Interchange
Consortium (CDISC) compliant Ophthalmology Analysis Data Model (ADaM)
datasets in R. ADaM datasets are a mandatory part of any New Drug or
Biologics License Application submitted to the United States Food and
Drug Administration (FDA). Analysis derivations are implemented in
accordance with the "Analysis Data Model Implementation Guide" (CDISC
Analysis Data Model Team, 2021,
<https://www.cdisc.org/standards/foundational/adam/adamig-v1-3-release-package>).
Author: Edoardo Mancini [aut, cre] ,
Yuki Matsunaga [aut],
F. Hoffmann-La Roche AG [cph, fnd],
Novartis AG [cph, fnd]
Maintainer: Edoardo Mancini <edoardo.mancini@roche.com>
Diff between admiralophtha versions 1.4.0 dated 2026-01-16 and 1.5.0 dated 2026-06-12
admiralophtha-1.4.0/admiralophtha/R/convert_etdrs_to_logmar.R |only admiralophtha-1.4.0/admiralophtha/R/convert_logmar_to_etdrs.R |only admiralophtha-1.5.0/admiralophtha/DESCRIPTION | 39 admiralophtha-1.5.0/admiralophtha/MD5 | 72 - admiralophtha-1.5.0/admiralophtha/NEWS.md | 174 ++- admiralophtha-1.5.0/admiralophtha/R/admiralophtha-package.R | 32 admiralophtha-1.5.0/admiralophtha/R/derive_var_bcvacritxfl.R | 12 admiralophtha-1.5.0/admiralophtha/R/logmar_etdrs.R |only admiralophtha-1.5.0/admiralophtha/README.md | 14 admiralophtha-1.5.0/admiralophtha/build/vignette.rds |binary admiralophtha-1.5.0/admiralophtha/inst/WORDLIST | 10 admiralophtha-1.5.0/admiralophtha/inst/doc/adbcva.Rmd | 6 admiralophtha-1.5.0/admiralophtha/inst/doc/adbcva.html | 67 - admiralophtha-1.5.0/admiralophtha/inst/doc/admiralophtha.Rmd | 2 admiralophtha-1.5.0/admiralophtha/inst/doc/admiralophtha.html | 2 admiralophtha-1.5.0/admiralophtha/inst/doc/adoe.Rmd | 10 admiralophtha-1.5.0/admiralophtha/inst/doc/adoe.html | 67 - admiralophtha-1.5.0/admiralophtha/inst/doc/advfq.R | 28 admiralophtha-1.5.0/admiralophtha/inst/doc/advfq.Rmd | 8 admiralophtha-1.5.0/admiralophtha/inst/doc/advfq.html | 551 ++++------ admiralophtha-1.5.0/admiralophtha/inst/doc/standards.Rmd | 2 admiralophtha-1.5.0/admiralophtha/inst/doc/standards.html | 2 admiralophtha-1.5.0/admiralophtha/man/admiralophtha-package.Rd | 12 admiralophtha-1.5.0/admiralophtha/man/admiralophtha_adbcva.Rd | 2 admiralophtha-1.5.0/admiralophtha/man/admiralophtha_adoe.Rd | 2 admiralophtha-1.5.0/admiralophtha/man/admiralophtha_advfq.Rd | 2 admiralophtha-1.5.0/admiralophtha/man/convert_etdrs_to_logmar.Rd | 24 admiralophtha-1.5.0/admiralophtha/man/convert_logmar_to_etdrs.Rd | 7 admiralophtha-1.5.0/admiralophtha/man/derive_var_bcvacritxfl.Rd | 7 admiralophtha-1.5.0/admiralophtha/man/derive_var_bcvacritxfl_util.Rd | 7 admiralophtha-1.5.0/admiralophtha/man/figures/novartis_logo.png |binary admiralophtha-1.5.0/admiralophtha/man/figures/roche_logo.png |binary admiralophtha-1.5.0/admiralophtha/tests/testthat/_snaps/derive_var_bcvacritxfl.md | 28 admiralophtha-1.5.0/admiralophtha/vignettes/adbcva.Rmd | 6 admiralophtha-1.5.0/admiralophtha/vignettes/admiralophtha.Rmd | 2 admiralophtha-1.5.0/admiralophtha/vignettes/adoe.Rmd | 10 admiralophtha-1.5.0/admiralophtha/vignettes/advfq.Rmd | 8 admiralophtha-1.5.0/admiralophtha/vignettes/articles/templates.Rmd |only admiralophtha-1.5.0/admiralophtha/vignettes/standards.Rmd | 2 39 files changed, 612 insertions(+), 605 deletions(-)
Title: Parallelize Common Functions via One Magic Function
Description: The futurize() function turns sequential map-reduce functions such as base::lapply(), purrr::map(), 'foreach::foreach() %do% { ... }' into concurrent alternatives, providing you with a simple, straightforward path to scalable parallel computing via the 'future' ecosystem <doi:10.32614/RJ-2021-048>. By combining this transpiler function with R's native pipe operator, you have a convenient way for speeding up iterative computations with minimal refactoring, e.g. 'lapply(xs, fcn) |> futurize()', 'purrr::map(xs, fcn) |> futurize()', and 'foreach::foreach(x = xs) %do% { fcn(x) } |> futurize()'. Other map-reduce packages that can be "futurized" are 'BiocParallel', 'plyr', 'crossmap', 'pbapply' packages. There is also support for a growing set of domain-specific packages on CRAN (e.g. 'boot', 'caret', 'DiceKriging', 'ez', 'fgsea', 'fwb', 'gamlss', 'glmmTMB', 'glmnet', 'kernelshap', 'lme4', 'metafor', 'mgcv', 'modelsummary', 'parameters', 'partykit', 'pls', 'pvclust', 'riskRegre [...truncated...]
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between futurize versions 0.3.0 dated 2026-04-01 and 1.0.0 dated 2026-06-12
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vignettes/futurize-81-SuperLearner.md |only vignettes/futurize-81-TSP.md | 2 vignettes/futurize-81-boot.md | 33 - vignettes/futurize-81-caret.md | 14 vignettes/futurize-81-ez.md |only vignettes/futurize-81-gamlss.md | 2 vignettes/futurize-81-kernelshap.md | 4 vignettes/futurize-81-modelsummary.md |only vignettes/futurize-81-parameters.md |only vignettes/futurize-81-partykit.md | 8 vignettes/futurize-81-pls.md |only vignettes/futurize-81-pvclust.md |only vignettes/futurize-81-riskRegression.md | 2 vignettes/futurize-81-rugarch.md |only vignettes/futurize-81-sandwich.md |only vignettes/futurize-81-scater.md | 17 vignettes/futurize-81-scuttle.md | 61 - vignettes/futurize-81-seriation.md | 4 vignettes/futurize-81-shapr.md | 4 vignettes/futurize-81-stars.md |only vignettes/futurize-81-vegan.md | 10 215 files changed, 1569 insertions(+), 1767 deletions(-)
Title: Fast Conversion and Querying of Danish Registers with 'Parquet'
Description: Converts large Danish register files ('sas7bdat') into 'Parquet'
format with year-based 'Hive' partitioning and chunked reading for
larger-than-memory files. Supports parallel conversion with a 'targets'
pipeline and reading those registers into 'DuckDB' tables for faster
querying and analyses.
Author: Signe Kirk Broedbaek [aut, cre] ,
Luke Johnston [aut] ,
Steno Diabetes Center Aarhus [cph],
Aarhus University [cph]
Maintainer: Signe Kirk Broedbaek <signekb@clin.au.dk>
Diff between fastreg versions 0.13.0 dated 2026-06-04 and 0.13.8 dated 2026-06-12
DESCRIPTION | 6 +- MD5 | 20 ++++---- NEWS.md | 50 ++++++++++++++++++++ R/convert.R | 20 ++++++-- R/log.R | 19 +++++-- R/use.R | 2 inst/doc/fastreg.html | 94 +++++++++++++++++++-------------------- inst/template-conversion-log.qmd | 6 +- inst/template-targets.R | 2 tests/testthat/test-convert.R | 40 ++++++++++++++++ tests/testthat/test-log.R | 16 +++--- 11 files changed, 196 insertions(+), 79 deletions(-)
Title: An Analyzer of International Large Scale Assessments in
Education
Description: An easy way to analyze international large-scale assessments and surveys in education or any other dataset that includes replicated weights (Balanced Repeated Replication (BRR) weights, Jackknife replicate weights,...) while also allowing for analysis with multiply imputed variables (plausible values). It supports the estimation of univariate statistics (e.g. mean, variance, standard deviation, quantiles), frequencies, correlation, linear regression and any other model already implemented in R that takes a data frame and weights as parameters. It also includes options to prepare the results for publication, following the table formatting standards of the Organization for Economic Cooperation and Development (OECD).
Author: Rodolfo Ilizaliturri [aut, cre],
Francesco Avvisati [aut],
Francois Keslair [aut]
Maintainer: Rodolfo Ilizaliturri <rodolfo.ilizaliturri@oecd.org>
Diff between Rrepest versions 1.6.13 dated 2026-06-05 and 1.6.14 dated 2026-06-12
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/rrepest.R | 11 +++++++++-- 3 files changed, 14 insertions(+), 7 deletions(-)
Title: 'ICESat-2' Altimeter Data using R
Description: Programmatic connection to the 'OpenAltimetry' API <https://openaltimetry.earthdatacloud.nasa.gov/data/openapi/swagger-ui/index.html/> to download and process 'ATL03' (Global 'Geolocated' Photon Data), 'ATL06' (Land Ice Height), 'ATL07' (Sea Ice Height), 'ATL08' (Land and Vegetation Height), 'ATL10' (Sea Ice 'Freeboard'), 'ATL12' (Ocean Surface Height) and 'ATL13' (Inland Water Surface Height) 'ICESat-2' Altimeter Data. The user has the option to download the data by selecting a bounding box from a 1- or 5-degree grid globally utilizing a shiny application. The 'ICESat-2' mission collects 'altimetry' data of the Earth's surface. The sole instrument on 'ICESat-2' is the Advanced Topographic Laser Altimeter System (ATLAS) instrument that measures ice sheet elevation change and sea ice thickness, while also generating an estimate of global vegetation biomass. 'ICESat-2' continues the important observations of ice-sheet elevation change, sea-ice 'freeboard', and vegetation canopy hei [...truncated...]
Author: Lampros Mouselimis [aut, cre] ,
OpenAltimetry.org [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between IceSat2R versions 1.0.9 dated 2026-03-05 and 1.1.0 dated 2026-06-12
DESCRIPTION | 11 MD5 | 52 NAMESPACE | 1 NEWS.md | 6 R/API_utils.R | 42 R/mission_orbits.R | 1570 +++++++++---------- README.md | 2 inst/data_files/technical_specs_urls.csv | 3 inst/doc/IceSat-2_Atlas_products_PDF.R | 3 inst/doc/IceSat-2_Atlas_products_PDF.Rmd | 3 inst/doc/IceSat-2_Atlas_products_PDF.pdf |binary inst/doc/IceSat-2_Mission_Orbits_PDF.pdf |binary inst/doc/IceSat-2_Virtual_File_System_Orbits_PDF.pdf |binary man/available_RGTs.Rd | 22 man/available_nominal_orbits.Rd | 16 man/latest_orbits.Rd | 4 man/overall_mission_orbits.Rd | 11 man/revisit_time_RGTs.Rd | 22 man/time_specific_orbits.Rd | 71 man/vsi_kml_from_zip.Rd | 32 man/vsi_nominal_orbits_wkt.Rd | 67 man/vsi_time_specific_orbits_wkt.Rd | 78 tests/testthat/test-API_utils.R | 81 tests/testthat/test-get_Atlas_data.R | 319 ++- tests/testthat/test-get_Tracks_data.R | 53 tests/testthat/test-mission_orbits.R | 235 +- vignettes/IceSat-2_Atlas_products_PDF.Rmd | 3 27 files changed, 1433 insertions(+), 1274 deletions(-)
Title: Header-Only 'C++' and 'R' Interface
Description: Provides a header only, 'C++' interface to 'R' with enhancements
over 'cpp11'. Enforces copy-on-write semantics consistent with 'R'
behavior. Offers native support for ALTREP objects, 'UTF-8' string
handling, modern 'C++' features and idioms, and reduced memory
requirements. Allows for vendoring, making it useful for restricted
environments. Compared to 'cpp11', it adds support for converting 'C++'
maps to 'R' lists, 'Roxygen' documentation directly in 'C++' code, proper
handling of matrix attributes, support for nullable external pointers,
bidirectional copy of complex number types, flexibility in type
conversions, use of nullable pointers, and various performance
optimizations.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Posit Software, PBC [aut]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between cpp4r versions 0.6.0 dated 2026-05-17 and 1.0.0 dated 2026-06-12
cpp4r-0.6.0/cpp4r/tests/testthat |only cpp4r-0.6.0/cpp4r/tests/testthat.R |only cpp4r-1.0.0/cpp4r/DESCRIPTION | 39 - cpp4r-1.0.0/cpp4r/MD5 | 81 +-- cpp4r-1.0.0/cpp4r/NEWS.md | 8 cpp4r-1.0.0/cpp4r/R/register.R | 222 +++------- cpp4r-1.0.0/cpp4r/R/template.R | 16 cpp4r-1.0.0/cpp4r/R/utils.R | 15 cpp4r-1.0.0/cpp4r/inst/extdata/pkgtemplate/dev/01_load_or_install.R | 2 cpp4r-1.0.0/cpp4r/inst/include/cpp4r/as.hpp | 64 ++ cpp4r-1.0.0/cpp4r/inst/include/cpp4r/attribute_proxy.hpp | 11 cpp4r-1.0.0/cpp4r/inst/include/cpp4r/cpp_version.hpp | 3 cpp4r-1.0.0/cpp4r/inst/include/cpp4r/data_frame.hpp | 24 - cpp4r-1.0.0/cpp4r/inst/include/cpp4r/doubles.hpp | 15 cpp4r-1.0.0/cpp4r/inst/include/cpp4r/environment.hpp | 18 cpp4r-1.0.0/cpp4r/inst/include/cpp4r/function.hpp | 17 cpp4r-1.0.0/cpp4r/inst/include/cpp4r/integers.hpp | 14 cpp4r-1.0.0/cpp4r/inst/include/cpp4r/list.hpp | 5 cpp4r-1.0.0/cpp4r/inst/include/cpp4r/list_of.hpp | 26 + cpp4r-1.0.0/cpp4r/inst/include/cpp4r/logicals.hpp | 1 cpp4r-1.0.0/cpp4r/inst/include/cpp4r/matrix.hpp | 16 cpp4r-1.0.0/cpp4r/inst/include/cpp4r/protect.hpp | 42 + cpp4r-1.0.0/cpp4r/inst/include/cpp4r/r_string.hpp | 42 + cpp4r-1.0.0/cpp4r/inst/include/cpp4r/r_vector_fwd.hpp | 69 +-- cpp4r-1.0.0/cpp4r/inst/include/cpp4r/r_vector_impl.hpp | 96 +++- cpp4r-1.0.0/cpp4r/inst/include/cpp4r/r_vector_writable_impl.hpp | 99 +++- cpp4r-1.0.0/cpp4r/inst/include/cpp4r/raws.hpp | 1 cpp4r-1.0.0/cpp4r/inst/include/cpp4r/sexp.hpp | 26 - cpp4r-1.0.0/cpp4r/inst/include/cpp4r/strings.hpp | 29 + cpp4r-1.0.0/cpp4r/inst/tinytest |only cpp4r-1.0.0/cpp4r/man/cpp4r-package.Rd | 2 cpp4r-1.0.0/cpp4r/man/pkg_template.Rd | 2 cpp4r-1.0.0/cpp4r/tests/tinytest.R |only 33 files changed, 692 insertions(+), 313 deletions(-)
Title: An 'Armadillo' Interface
Description: Provides function declarations and inline function definitions
that facilitate communication between R and the 'Armadillo' 'C++' library
for linear algebra and scientific computing. This implementation is derived
from Vargas Sepulveda and Schneider Malamud (2024)
<doi:10.1016/j.softx.2025.102087>.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Jonathan Schneider Malamud [ctb],
Conrad Sanderson [aut] )
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between armadillo4r versions 0.9.0 dated 2026-05-20 and 1.0.0 dated 2026-06-12
armadillo4r-0.9.0/armadillo4r/inst/extdata/NAMESPACE |only armadillo4r-0.9.0/armadillo4r/inst/extdata/README.md |only armadillo4r-0.9.0/armadillo4r/inst/extdata/cleanup |only armadillo4r-0.9.0/armadillo4r/inst/extdata/configure |only armadillo4r-0.9.0/armadillo4r/inst/extdata/configure.win |only armadillo4r-0.9.0/armadillo4r/inst/extdata/dev |only armadillo4r-0.9.0/armadillo4r/inst/extdata/src |only armadillo4r-0.9.0/armadillo4r/tests/testthat |only armadillo4r-0.9.0/armadillo4r/tests/testthat.R |only armadillo4r-1.0.0/armadillo4r/DESCRIPTION | 41 ++----- armadillo4r-1.0.0/armadillo4r/MD5 | 52 +++++----- armadillo4r-1.0.0/armadillo4r/R/template.R | 26 +++-- armadillo4r-1.0.0/armadillo4r/README.md | 7 + armadillo4r-1.0.0/armadillo4r/inst/extdata/pkgtemplate |only armadillo4r-1.0.0/armadillo4r/inst/include/armadillo4r/wrappers/sparse_matrices.hpp | 14 +- armadillo4r-1.0.0/armadillo4r/inst/tinytest |only armadillo4r-1.0.0/armadillo4r/man/pkg_template.Rd | 4 armadillo4r-1.0.0/armadillo4r/man/unvendor.Rd | 4 armadillo4r-1.0.0/armadillo4r/man/vendor.Rd | 12 +- armadillo4r-1.0.0/armadillo4r/tests/tinytest.R |only 20 files changed, 85 insertions(+), 75 deletions(-)
Title: ADaM in R Asset Library
Description: A toolbox for programming Clinical Data Interchange Standards
Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in R.
ADaM datasets are a mandatory part of any New Drug or Biologics
License Application submitted to the United States Food and Drug
Administration (FDA). Analysis derivations are implemented in
accordance with the "Analysis Data Model Implementation Guide" (CDISC
Analysis Data Model Team, 2021,
<https://www.cdisc.org/standards/foundational/adam>).
Author: Edoardo Mancini [aut, cre] ,
Stefan Bundfuss [aut] ,
Arianna Cascone [aut] ,
Kristin Dahnert [aut],
Jeffrey Dickinson [aut],
Ross Farrugia [aut],
Fanny Gautier [aut] ,
Liam Hobby [aut],
Gordon Miller [aut],
Lina Patil [aut],
Ben Straub [aut],
F. Hoff [...truncated...]
Maintainer: Edoardo Mancini <edoardo.mancini@roche.com>
Diff between admiral versions 1.4.2 dated 2026-05-28 and 1.5.0 dated 2026-06-12
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12 admiral-1.5.0/admiral/man/admiral-package.Rd | 14 admiral-1.5.0/admiral/man/admiral_adlb.Rd | 3 admiral-1.5.0/admiral/man/admiral_adsl.Rd | 3 admiral-1.5.0/admiral/man/admiral_labels_attrs_section.Rd |only admiral-1.5.0/admiral/man/assert_date_imputation.Rd | 12 admiral-1.5.0/admiral/man/assert_db_requirements.Rd | 36 admiral-1.5.0/admiral/man/assert_highest_imputation.Rd | 30 admiral-1.5.0/admiral/man/assert_parameters_argument.Rd | 12 admiral-1.5.0/admiral/man/assert_terms.Rd | 24 admiral-1.5.0/admiral/man/assert_time_imputation.Rd | 12 admiral-1.5.0/admiral/man/atoxgr_criteria_ctcv4.Rd | 2 admiral-1.5.0/admiral/man/atoxgr_criteria_ctcv4_uscv.Rd | 2 admiral-1.5.0/admiral/man/atoxgr_criteria_ctcv5.Rd | 4 admiral-1.5.0/admiral/man/atoxgr_criteria_ctcv5_uscv.Rd | 4 admiral-1.5.0/admiral/man/atoxgr_criteria_ctcv6.Rd | 2 admiral-1.5.0/admiral/man/atoxgr_criteria_ctcv6_uscv.Rd | 2 admiral-1.5.0/admiral/man/atoxgr_criteria_daids.Rd | 2 admiral-1.5.0/admiral/man/atoxgr_criteria_daids_uscv.Rd | 2 admiral-1.5.0/admiral/man/basket_select.Rd | 47 admiral-1.5.0/admiral/man/call_derivation.Rd | 30 admiral-1.5.0/admiral/man/call_user_fun.Rd | 35 admiral-1.5.0/admiral/man/censor_source.Rd | 66 admiral-1.5.0/admiral/man/chr2vars.Rd | 8 admiral-1.5.0/admiral/man/compute_age_years.Rd | 35 admiral-1.5.0/admiral/man/compute_bmi.Rd | 37 admiral-1.5.0/admiral/man/compute_bsa.Rd | 44 admiral-1.5.0/admiral/man/compute_dtf.Rd | 33 admiral-1.5.0/admiral/man/compute_duration.Rd | 73 admiral-1.5.0/admiral/man/compute_egfr.Rd | 65 admiral-1.5.0/admiral/man/compute_framingham.Rd | 71 admiral-1.5.0/admiral/man/compute_map.Rd | 41 admiral-1.5.0/admiral/man/compute_qtc.Rd | 42 admiral-1.5.0/admiral/man/compute_qual_imputation.Rd | 38 admiral-1.5.0/admiral/man/compute_qual_imputation_dec.Rd | 29 admiral-1.5.0/admiral/man/compute_rr.Rd | 26 admiral-1.5.0/admiral/man/compute_scale.Rd | 54 admiral-1.5.0/admiral/man/compute_tmf.Rd | 40 admiral-1.5.0/admiral/man/consolidate_metadata.Rd | 41 admiral-1.5.0/admiral/man/convert_blanks_to_na.Rd | 10 admiral-1.5.0/admiral/man/convert_date_to_dtm.Rd | 97 admiral-1.5.0/admiral/man/convert_dtc_to_dt.Rd | 88 admiral-1.5.0/admiral/man/convert_dtc_to_dtm.Rd | 96 admiral-1.5.0/admiral/man/convert_na_to_blanks.Rd | 10 admiral-1.5.0/admiral/man/convert_xxtpt_to_hours.Rd | 157 admiral-1.5.0/admiral/man/count_vals.Rd | 26 admiral-1.5.0/admiral/man/country_code_lookup.Rd | 2 admiral-1.5.0/admiral/man/create_period_dataset.Rd | 24 admiral-1.5.0/admiral/man/create_query_data.Rd | 24 admiral-1.5.0/admiral/man/create_single_dose_dataset.Rd | 68 admiral-1.5.0/admiral/man/date_source.Rd | 42 admiral-1.5.0/admiral/man/default_qtc_paramcd.Rd | 40 admiral-1.5.0/admiral/man/derivation_slice.Rd | 18 admiral-1.5.0/admiral/man/derive_basetype_records.Rd | 141 admiral-1.5.0/admiral/man/derive_expected_records.Rd | 55 admiral-1.5.0/admiral/man/derive_extreme_event.Rd | 703 admiral-1.5.0/admiral/man/derive_extreme_records.Rd | 721 - admiral-1.5.0/admiral/man/derive_locf_records.Rd | 228 admiral-1.5.0/admiral/man/derive_param_bmi.Rd | 88 admiral-1.5.0/admiral/man/derive_param_bsa.Rd | 95 admiral-1.5.0/admiral/man/derive_param_computed.Rd | 427 admiral-1.5.0/admiral/man/derive_param_doseint.Rd | 100 admiral-1.5.0/admiral/man/derive_param_exist_flag.Rd | 97 admiral-1.5.0/admiral/man/derive_param_exposure.Rd | 67 admiral-1.5.0/admiral/man/derive_param_extreme_record.Rd | 61 admiral-1.5.0/admiral/man/derive_param_framingham.Rd | 130 admiral-1.5.0/admiral/man/derive_param_map.Rd | 89 admiral-1.5.0/admiral/man/derive_param_qtc.Rd | 89 admiral-1.5.0/admiral/man/derive_param_rr.Rd | 75 admiral-1.5.0/admiral/man/derive_param_tte.Rd | 1071 + admiral-1.5.0/admiral/man/derive_param_wbc_abs.Rd | 85 admiral-1.5.0/admiral/man/derive_summary_records.Rd | 415 admiral-1.5.0/admiral/man/derive_var_age_years.Rd | 31 admiral-1.5.0/admiral/man/derive_var_analysis_ratio.Rd | 45 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93 admiral-1.5.0/admiral/man/derive_var_shift.Rd | 57 admiral-1.5.0/admiral/man/derive_var_trtdurd.Rd | 30 admiral-1.5.0/admiral/man/derive_var_trtemfl.Rd | 382 admiral-1.5.0/admiral/man/derive_vars_aage.Rd | 51 admiral-1.5.0/admiral/man/derive_vars_atc.Rd | 34 admiral-1.5.0/admiral/man/derive_vars_cat.Rd | 253 admiral-1.5.0/admiral/man/derive_vars_computed.Rd | 90 admiral-1.5.0/admiral/man/derive_vars_crit_flag.Rd | 209 admiral-1.5.0/admiral/man/derive_vars_dt.Rd | 395 admiral-1.5.0/admiral/man/derive_vars_dtm.Rd | 316 admiral-1.5.0/admiral/man/derive_vars_dtm_to_dt.Rd | 28 admiral-1.5.0/admiral/man/derive_vars_dtm_to_tm.Rd | 28 admiral-1.5.0/admiral/man/derive_vars_duration.Rd | 82 admiral-1.5.0/admiral/man/derive_vars_dy.Rd | 36 admiral-1.5.0/admiral/man/derive_vars_extreme_event.Rd | 66 admiral-1.5.0/admiral/man/derive_vars_joined.Rd | 715 - admiral-1.5.0/admiral/man/derive_vars_joined_summary.Rd | 385 admiral-1.5.0/admiral/man/derive_vars_merged.Rd | 389 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admiral-1.5.0/admiral/man/filter_exist.Rd | 38 admiral-1.5.0/admiral/man/filter_extreme.Rd | 49 admiral-1.5.0/admiral/man/filter_joined.Rd | 381 admiral-1.5.0/admiral/man/filter_not_exist.Rd | 38 admiral-1.5.0/admiral/man/filter_relative.Rd | 75 admiral-1.5.0/admiral/man/flag_event.Rd | 37 admiral-1.5.0/admiral/man/format.basket_select.Rd | 18 admiral-1.5.0/admiral/man/format_imputed_dtc.Rd | 6 admiral-1.5.0/admiral/man/get_admiral_option.Rd | 10 admiral-1.5.0/admiral/man/get_dt_dtm_range.Rd | 12 admiral-1.5.0/admiral/man/get_duplicates_dataset.Rd | 4 admiral-1.5.0/admiral/man/get_flagged_records.Rd | 31 admiral-1.5.0/admiral/man/get_highest_imputation_level.Rd | 12 admiral-1.5.0/admiral/man/get_hori_data.Rd | 33 admiral-1.5.0/admiral/man/get_imputation_target_date.Rd | 52 admiral-1.5.0/admiral/man/get_imputation_target_time.Rd | 31 admiral-1.5.0/admiral/man/get_imputation_targets.Rd | 17 admiral-1.5.0/admiral/man/get_joined_data.Rd | 84 admiral-1.5.0/admiral/man/get_joined_sub_data.Rd | 62 admiral-1.5.0/admiral/man/get_many_to_one_dataset.Rd | 4 admiral-1.5.0/admiral/man/get_not_mapped.Rd | 6 admiral-1.5.0/admiral/man/get_one_to_many_dataset.Rd | 4 admiral-1.5.0/admiral/man/get_partialdatetime.Rd | 26 admiral-1.5.0/admiral/man/get_summary_records.Rd | 40 admiral-1.5.0/admiral/man/get_terms_from_db.Rd | 54 admiral-1.5.0/admiral/man/get_vars_query.Rd | 18 admiral-1.5.0/admiral/man/impute_date_time.Rd | 12 admiral-1.5.0/admiral/man/impute_dtc_dt.Rd | 99 admiral-1.5.0/admiral/man/impute_dtc_dtm.Rd | 96 admiral-1.5.0/admiral/man/is_partial_datetime.Rd | 6 admiral-1.5.0/admiral/man/list_all_templates.Rd | 11 admiral-1.5.0/admiral/man/list_tte_source_objects.Rd | 8 admiral-1.5.0/admiral/man/max_cond.Rd | 26 admiral-1.5.0/admiral/man/min_cond.Rd | 26 admiral-1.5.0/admiral/man/negate_vars.Rd | 8 admiral-1.5.0/admiral/man/params.Rd | 8 admiral-1.5.0/admiral/man/pipe.Rd | 12 admiral-1.5.0/admiral/man/print.adam_templates.Rd | 18 admiral-1.5.0/admiral/man/print.duplicates.Rd | 18 admiral-1.5.0/admiral/man/print.source.Rd | 18 admiral-1.5.0/admiral/man/print_named_list.Rd | 18 admiral-1.5.0/admiral/man/propagate_na_values.Rd | 6 admiral-1.5.0/admiral/man/queries.Rd | 3 admiral-1.5.0/admiral/man/queries_mh.Rd | 3 admiral-1.5.0/admiral/man/query.Rd | 53 admiral-1.5.0/admiral/man/records_source.Rd | 36 admiral-1.5.0/admiral/man/restrict_derivation.Rd | 30 admiral-1.5.0/admiral/man/restrict_imputed_dtc_dt.Rd | 39 admiral-1.5.0/admiral/man/restrict_imputed_dtc_dtm.Rd | 44 admiral-1.5.0/admiral/man/roxygen/rdx_meta.R | 4 admiral-1.5.0/admiral/man/set_admiral_options.Rd | 22 admiral-1.5.0/admiral/man/signal_duplicate_records.Rd | 41 admiral-1.5.0/admiral/man/slice_derivation.Rd | 30 admiral-1.5.0/admiral/man/transform_range.Rd | 52 admiral-1.5.0/admiral/man/tte_source.Rd | 66 admiral-1.5.0/admiral/man/tte_source_objects.Rd | 19 admiral-1.5.0/admiral/man/use_ad_template.Rd | 29 admiral-1.5.0/admiral/man/validate_basket_select.Rd | 6 admiral-1.5.0/admiral/man/validate_query.Rd | 6 admiral-1.5.0/admiral/man/yn_to_numeric.Rd | 10 admiral-1.5.0/admiral/tests/testthat/_snaps/call_user_fun.md | 9 admiral-1.5.0/admiral/tests/testthat/_snaps/derive_extreme_event.md | 2 admiral-1.5.0/admiral/tests/testthat/_snaps/derive_param_computed.md | 36 admiral-1.5.0/admiral/tests/testthat/_snaps/derive_param_tte.md | 2 admiral-1.5.0/admiral/tests/testthat/_snaps/derive_summary_records.md | 2 admiral-1.5.0/admiral/tests/testthat/_snaps/derive_vars_computed.md |only admiral-1.5.0/admiral/tests/testthat/_snaps/derive_vars_dt.md | 16 admiral-1.5.0/admiral/tests/testthat/_snaps/derive_vars_dtm.md | 27 admiral-1.5.0/admiral/tests/testthat/_snaps/user_helpers.md | 2 admiral-1.5.0/admiral/tests/testthat/_snaps/user_utils.md | 18 admiral-1.5.0/admiral/tests/testthat/test-call_user_fun.R | 2 admiral-1.5.0/admiral/tests/testthat/test-create_query_data.R | 133 admiral-1.5.0/admiral/tests/testthat/test-derive_extreme_event.R | 142 admiral-1.5.0/admiral/tests/testthat/test-derive_extreme_records.R | 53 admiral-1.5.0/admiral/tests/testthat/test-derive_merged.R | 469 admiral-1.5.0/admiral/tests/testthat/test-derive_param_bmi.R | 8 admiral-1.5.0/admiral/tests/testthat/test-derive_param_bsa.R | 49 admiral-1.5.0/admiral/tests/testthat/test-derive_param_computed.R | 26 admiral-1.5.0/admiral/tests/testthat/test-derive_param_exist_flag.R | 90 admiral-1.5.0/admiral/tests/testthat/test-derive_param_exposure.R | 164 admiral-1.5.0/admiral/tests/testthat/test-derive_param_framingham.R | 36 admiral-1.5.0/admiral/tests/testthat/test-derive_param_map.R | 16 admiral-1.5.0/admiral/tests/testthat/test-derive_param_tte.R | 201 admiral-1.5.0/admiral/tests/testthat/test-derive_var_anrind.R | 26 admiral-1.5.0/admiral/tests/testthat/test-derive_var_atoxgr.R | 7040 ++-------- admiral-1.5.0/admiral/tests/testthat/test-derive_var_extreme_date.R | 192 admiral-1.5.0/admiral/tests/testthat/test-derive_var_extreme_flag.R | 62 admiral-1.5.0/admiral/tests/testthat/test-derive_var_joined_exist_flag.R | 87 admiral-1.5.0/admiral/tests/testthat/test-derive_var_trtemfl.R | 326 admiral-1.5.0/admiral/tests/testthat/test-derive_vars_cat.R | 344 admiral-1.5.0/admiral/tests/testthat/test-derive_vars_computed.R | 27 admiral-1.5.0/admiral/tests/testthat/test-derive_vars_dt.R | 241 admiral-1.5.0/admiral/tests/testthat/test-derive_vars_dtm.R | 224 admiral-1.5.0/admiral/tests/testthat/test-derive_vars_dtm_to_tm.R | 114 admiral-1.5.0/admiral/tests/testthat/test-derive_vars_transposed.R | 42 admiral-1.5.0/admiral/tests/testthat/test-dt_level.R | 23 admiral-1.5.0/admiral/tests/testthat/test-filter_joined.R | 72 admiral-1.5.0/admiral/tests/testthat/test-filter_relative.R | 166 admiral-1.5.0/admiral/tests/testthat/test-user_helpers.R | 27 admiral-1.5.0/admiral/tests/testthat/test-user_utils.R | 16 admiral-1.5.0/admiral/vignettes/adab.Rmd | 1662 -- admiral-1.5.0/admiral/vignettes/adsl.Rmd | 32 admiral-1.5.0/admiral/vignettes/bds_exposure.Rmd | 34 admiral-1.5.0/admiral/vignettes/bds_finding.Rmd | 43 admiral-1.5.0/admiral/vignettes/bds_tte.Rmd | 176 admiral-1.5.0/admiral/vignettes/estimands.Rmd |only admiral-1.5.0/admiral/vignettes/hys_law.Rmd | 4 admiral-1.5.0/admiral/vignettes/img |only admiral-1.5.0/admiral/vignettes/imputation.Rmd | 8 admiral-1.5.0/admiral/vignettes/lab_grading.Rmd | 58 admiral-1.5.0/admiral/vignettes/occds.Rmd | 153 admiral-1.5.0/admiral/vignettes/pk_adnca.Rmd | 46 admiral-1.5.0/admiral/vignettes/questionnaires.Rmd | 12 admiral-1.5.0/admiral/vignettes/tte_analyses.Rmd |only admiral-1.5.0/admiral/vignettes/visits_periods.Rmd | 2 343 files changed, 22670 insertions(+), 19356 deletions(-)
Title: Bayesian Exploratory Factor Analysis
Description: Exploratory Bayesian factor analysis of continuous, mixed-type, and bounded continuous variables using the mode-jumping algorithm of Man and Culpepper (2020) <doi:10.1080/01621459.2020.1773833>.
Author: Albert Man [aut],
Steven Andrew Culpepper [aut, cre]
Maintainer: Steven Andrew Culpepper <sculpepp@illinois.edu>
This is a re-admission after prior archival of version 0.0.0.4 dated 2021-02-10
Diff between bayesefa versions 0.0.0.4 dated 2021-02-10 and 0.0.0.6 dated 2026-06-12
DESCRIPTION | 19 +++--- MD5 | 28 +++++----- NAMESPACE | 20 +++---- R/RcppExports.R | 64 +++++------------------ build |only inst/CITATION |only inst/WORDLIST |only man/IFA_Mode_Jumper.Rd | 51 ------------------ man/bayesefa-package.Rd | 5 + src/EFA_mode_jumper4.cpp | 43 +++++++++++++-- src/IFA_mode_jumper_mixedresponses_v4bounded.cpp | 2 src/IFA_mode_jumper_v5.cpp | 55 ------------------- src/Makevars | 2 src/Makevars.win | 10 ++- src/RcppExports.cpp | 20 +++++++ src/commonEFAfunctions.cpp | 5 + src/commonEFAfunctions.h |only 17 files changed, 126 insertions(+), 198 deletions(-)
Title: Ebrahim-Farrington Goodness-of-Fit Test for Logistic Regression
Description: Implements the Ebrahim-Farrington goodness-of-fit test for logistic
regression models, particularly effective for sparse data and binary outcomes.
This test provides an improved alternative to the traditional Hosmer-Lemeshow
test by using a modified Pearson chi-square statistic with data-dependent
grouping. The test is based on Farrington (1996) theoretical framework but
simplified for practical implementation with binary data. Includes functions
for both the original Farrington test (for grouped data) and the new
Ebrahim-Farrington test (for binary data with automatic grouping), the
Directed Ebrahim-Farrington (DEF) test that targets calibration-shape
departures, and an ensemble that combines the DEF bases via the Cauchy
combination test. For more details see Hosmer (1980) <doi:10.1080/03610928008827941> and Farrington (1996) <doi:10.1111/j.2517-6161.1996.tb02086.x>.
Author: Ebrahim Khaled Ebrahim [aut, cre]
Maintainer: Ebrahim Khaled Ebrahim <ebrahimkhaled@alexu.edu.eg>
Diff between ebrahim.gof versions 1.0.0 dated 2025-09-01 and 2.0.0 dated 2026-06-12
DESCRIPTION | 27 +- MD5 | 32 +- NAMESPACE | 17 + NEWS.md | 80 +++++++ R/def_ensemble_gof.R |only R/def_gof.R |only R/ebrahim_farrington_test.R | 39 ++- R/run_all_gof.R |only README.md | 192 +++++++++++++++-- inst/WORDLIST |only inst/doc/ebrahim-farrington-intro.R | 12 + inst/doc/ebrahim-farrington-intro.Rmd | 62 +++++ inst/doc/ebrahim-farrington-intro.html | 370 +++++++++++++++++++++++---------- man/def.ensemble.gof.Rd |only man/def.gof.Rd |only man/ef.gof.Rd | 22 + man/run.all.gof.Rd |only tests/testthat/test-def-ensemble-gof.R |only tests/testthat/test-def-gof.R |only tests/testthat/test-ef-method.R |only tests/testthat/test-run-all-gof.R |only vignettes/ebrahim-farrington-intro.Rmd | 62 +++++ vignettes/power_size_def.png |only 23 files changed, 761 insertions(+), 154 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-12-03 0.2.3
2024-05-02 0.2.2
Title: Cryptographic Hash Functions and Data Encoding
Description: Fast and memory-efficient streaming hash functions,
binary/text encoding and serialization. Hashes strings and raw vectors
directly. Stream hashes files which can be larger than memory, as
well as in-memory objects through R's serialization mechanism.
Implements the SHA-256, SHA-3 and 'Keccak' cryptographic hash
functions, SHAKE256 extendable-output function (XOF), 'SipHash'
pseudo-random function, base64 (including the URL-safe variant) and
base58 encoding, 'CBOR' and 'JSON' serialization.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph],
The Mbed TLS Contributors [cph] ,
Red Hat, Inc. [cph] ,
Luke Dashjr [cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between secretbase versions 1.2.2 dated 2026-05-01 and 1.3.0 dated 2026-06-12
DESCRIPTION | 13 ++-- MD5 | 24 ++++---- NEWS.md | 4 + R/base.R | 20 ++++++- README.md | 31 +++++++--- build/partial.rdb |binary man/base64dec.Rd | 11 +++ man/base64enc.Rd | 10 +++ man/secretbase-package.Rd | 7 ++ src/base64.c | 130 +++++++++++++++++++++++++++------------------- src/init.c | 4 - src/secret.h | 6 +- tests/tests.R | 12 ++++ 13 files changed, 184 insertions(+), 88 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-29 10.1.8
2026-05-12 10.1.7
2026-04-26 10.1.6
2026-03-12 10.1.5
2026-02-23 10.1.4
2026-01-21 10.1.1.1
2026-01-08 10.1.1
2025-12-06 10.0.0
2025-03-21 9.3.21
2025-03-09 9.3.20
2025-01-07 9.3.18
2024-12-04 9.3.16
2024-09-29 9.3.12
2024-09-17 9.3.11
2024-07-09 9.3.7.2
2024-05-13 9.3.5.1
2024-05-01 9.3.5
2024-03-26 9.3.3.1
2024-03-16 9.3.3
2024-01-25 9.1.22
2023-10-31 9.1.17.1
2023-10-16 9.1.17
2023-09-27 9.1.16
2023-09-06 9.1.15
2023-08-07 9.1.12
2023-07-05 9.1.11
2023-05-04 9.1.9
2023-03-24 9.1.8
2023-03-19 9.1.7
2023-02-20 9.1.6
2023-01-27 9.1.4
2023-01-15 9.1.3
2022-12-20 9.1.2
2022-11-09 8.5.20
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-21 0.9.26
2026-02-24 0.9.25
2026-01-14 0.9.24
2025-05-19 0.9.23
2025-03-11 0.9.21
2025-02-15 0.9.20
2024-07-09 0.9.18
2024-05-01 0.9.17
2024-03-28 0.9.16
2024-03-18 0.9.15
2023-06-29 0.9.14
2023-05-08 0.9.13
2023-04-20 0.9.12
2023-01-27 0.9.11
2023-01-12 0.9.10
2023-01-06 0.9.9
2022-12-23 0.9.8
2022-11-12 0.9.6
2022-05-14 0.9.4
2022-05-04 0.9.3
2022-04-29 0.9.2
2022-04-28 0.9.1
2022-04-25 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-22 1.8
2026-01-17 1.7
2025-08-19 1.6
2025-06-13 1.5
2025-05-18 1.4
2025-02-02 1.3
2023-07-15 1.2
2023-07-11 1.1
2023-06-29 1.0
2023-04-24 0.8
2023-04-21 0.7
2023-04-19 0.6
2023-01-17 0.5
Title: Fast and Scalable Cellwise-Robust Ensemble
Description: Functions to perform robust variable selection and regression using the Fast and Scalable
Cellwise-Robust Ensemble (FSCRE) algorithm. The approach establishes a robust foundation
using the Detect Deviating Cells (DDC) algorithm and robust correlation estimates. It then
employs a competitive ensemble architecture where a robust Least Angle Regression (LARS)
engine proposes candidate variables and cross-validation arbitrates their assignment. A final
robust MM-estimator is applied to the selected predictors.
Author: Anthony Christidis [aut, cre],
Gabriela Cohen-Freue [aut]
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between srlars versions 2.0.1 dated 2026-03-30 and 3.0.0 dated 2026-06-12
DESCRIPTION | 8 - MD5 | 38 +++---- NAMESPACE | 2 NEWS.md | 8 + R/checkInputData.R | 48 +++++--- R/coef.srlars.R | 10 + R/computeCVError.R | 190 ++++++++++++++++++++++------------- R/computeRobustFoundation.R | 93 +++++++++-------- R/performSelectionLoop.R | 222 ++++++++++++++++++++++++++++++++--------- R/predict.srlars.R | 32 +++-- R/srlars.R | 91 +++++++++++++--- README.md | 26 +++- man/checkInputData.Rd | 30 +++++ man/coef.srlars.Rd | 10 + man/computeCVError.Rd | 17 +-- man/computeRobustFoundation.Rd | 13 +- man/performSelectionLoop.Rd | 79 ++++++++++++-- man/predict.srlars.Rd | 30 +++-- man/srlars.Rd | 32 +++++ tests/testthat/test-srlars.R | 134 ++++++++++++++---------- 20 files changed, 778 insertions(+), 335 deletions(-)
Title: Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Description: Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).
Author: Dominic Gruen [aut, cre]
Maintainer: Dominic Gruen <dominic.gruen@gmail.com>
This is a re-admission after prior archival of version 0.4.0 dated 2026-02-23
Diff between RaceID versions 0.4.0 dated 2026-02-23 and 0.4.1 dated 2026-06-12
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 1 - R/VarID_functions.R | 17 +++++++---------- inst/doc/RaceID.html | 4 ++-- man/pruneKnn.Rd | 2 +- 6 files changed, 21 insertions(+), 25 deletions(-)
Title: Spatial and Environmental Data Tools for Landscape Ecology
Description: Provides functions for landscape analysis and data retrieval.
The package allows users to download environmental variables from global
datasets (e.g., WorldClim, CHELSA, ESA WorldCover, Nighttime Lights), and
to compute spatial and landscape metrics using a hexagonal grid system
based on the H3 spatial index. It is useful for ecological modeling,
biodiversity studies, and spatial data processing in landscape ecology.
Fick and Hijmans (2017) <doi:10.1002/joc.5086>.
Zanaga et al. (2022) <doi:10.5281/zenodo.7254221>.
Uber Technologies Inc. (2022) "H3: Hexagonal hierarchical spatial index".
Román et al. (2018) <doi:10.1016/j.rse.2018.03.017>.
Karger et al. (2017) <doi:10.1038/sdata.2017.122>.
Brun et al. (2022) <doi:10.5194/essd-14-5573-2022>.
Author: Manuel Spinola [aut, cre]
Maintainer: Manuel Spinola <mspinola10@gmail.com>
Diff between paisaje versions 0.2.0 dated 2026-01-07 and 0.3.0 dated 2026-06-12
paisaje-0.2.0/paisaje/man/reexports.Rd |only paisaje-0.3.0/paisaje/DESCRIPTION | 34 +- paisaje-0.3.0/paisaje/MD5 | 39 +-- paisaje-0.3.0/paisaje/NAMESPACE | 22 + paisaje-0.3.0/paisaje/NEWS.md | 72 +++++ paisaje-0.3.0/paisaje/R/cr_outline_c.R |only paisaje-0.3.0/paisaje/R/extract_cat_raster.R | 51 +--- paisaje-0.3.0/paisaje/R/get_chelsa_future.R |only paisaje-0.3.0/paisaje/R/get_chelsa_historic.R |only paisaje-0.3.0/paisaje/R/get_cr_outline.R |only paisaje-0.3.0/paisaje/R/get_nightlight_data.R | 285 +++++++++++++++++------ paisaje-0.3.0/paisaje/R/get_records_by_hexagon.R | 18 - paisaje-0.3.0/paisaje/R/utils_globals.R | 9 paisaje-0.3.0/paisaje/build/partial.rdb |binary paisaje-0.3.0/paisaje/build/vignette.rds |binary paisaje-0.3.0/paisaje/data/cr_outline.rda |only paisaje-0.3.0/paisaje/data/cr_outline_c.rda |binary paisaje-0.3.0/paisaje/inst/WORDLIST |only paisaje-0.3.0/paisaje/inst/doc/paisaje.html | 4 paisaje-0.3.0/paisaje/man/cr_outline.Rd |only paisaje-0.3.0/paisaje/man/cr_outline_c.Rd | 47 +++ paisaje-0.3.0/paisaje/man/get_chelsa_future.Rd |only paisaje-0.3.0/paisaje/man/get_chelsa_historic.Rd |only paisaje-0.3.0/paisaje/man/get_cr_outline.Rd |only paisaje-0.3.0/paisaje/man/get_nightlight_data.Rd | 169 +++++++++++-- paisaje-0.3.0/paisaje/man/paisaje-package.Rd | 7 26 files changed, 582 insertions(+), 175 deletions(-)
Title: Generates Dense and Sparse Graphs using Graphon Extensions
Description: Generates dense or sparse graphs using graphon mixtures and graphettes. Graphon mixtures uses two graphons U and W to generate graphs. Sparse graphs are generated in this case using the inverse line graph (root) operation. Graphettes have 3 components, the graphon W, a real-valued sequence and a graph edit function. Both techniques can generate dense or sparse graphs. Kandanaarachchi and Ong (2026) <doi:10.48550/arXiv.2505.13864>, Wijesinghe et al (2026) <doi:10.48550/arXiv.2602.23566>.
Author: Sevvandi Kandanaarachchi [aut, cre]
Maintainer: Sevvandi Kandanaarachchi <sevvandik@gmail.com>
Diff between graphonmix versions 0.0.1.0 dated 2025-10-09 and 0.1.1 dated 2026-06-12
DESCRIPTION | 12 +-- MD5 | 51 +++++++++---- NAMESPACE | 11 ++ R/autoplot_separate_dense_sparse.R |only R/graph_separation.R |only R/graphettes.R |only R/utils.R | 64 ++++++++++++++++- README.md | 111 +++++++++++++++++------------- build/vignette.rds |binary inst/doc/graphette.R |only inst/doc/graphette.Rmd |only inst/doc/graphette.html |only inst/doc/graphonmix.Rmd | 8 +- inst/doc/graphonmix.html | 69 +++++++++--------- inst/doc/linegraphons.html | 16 ++-- man/autoplot.separate_dense_and_sparse.Rd |only man/create_exp_matrix.Rd | 2 man/figures/README-example-1.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-2-2.png |binary man/figures/README-unnamed-chunk-2-3.png |binary man/figures/README-unnamed-chunk-3-1.png |only man/graphonmix-package.Rd | 4 - man/ring_graphon.Rd |only man/sample_graphette.Rd |only man/sample_sparse_graphon.Rd |only man/sbm_graphon.Rd |only man/separate_dense_and_sparse.Rd |only man/star_f1.Rd |only man/star_f2.Rd |only man/star_f3.Rd |only man/star_f4.Rd |only man/star_f5.Rd |only vignettes/bibliography.bib | 11 ++ vignettes/graphette.Rmd |only vignettes/graphonmix.Rmd | 8 +- 36 files changed, 239 insertions(+), 128 deletions(-)
Title: Generalized Linear Models Extended
Description: Extended techniques for generalized linear models (GLMs), especially for binary responses,
including parametric links and heteroscedastic latent variables.
Author: Achim Zeileis [aut, cre] ,
Roger Koenker [aut] ,
Philipp Doebler [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between glmx versions 0.2-1 dated 2024-09-03 and 0.2-2 dated 2026-06-12
DESCRIPTION | 17 ++++++++++------- MD5 | 9 +++++---- NEWS.md | 9 +++++++++ README.md |only build/partial.rdb |binary man/plinks.Rd | 5 +---- 6 files changed, 25 insertions(+), 15 deletions(-)
Title: Interactive Forest Plot
Description: Interactive forest plot for clinical trial safety analysis
using 'metalite', 'reactable', 'plotly', and Analysis Data Model (ADaM)
datasets. Includes functionality for adverse event filtering,
incidence-based group filtering, hover-over reveals, and search and sort
operations. The workflow allows for metadata construction, data preparation,
output formatting, and interactive plot generation.
Author: Yilong Zhang [aut],
Benjamin Wang [aut],
Yujie Zhao [aut, cre],
Nan Xiao [ctb],
Hiroaki Fukuda [aut],
Yulia Sidi [ctb],
Xuan Deng [ctb],
Jeetener Chauhan [ctb],
Li Ma [ctb],
Chen Wang [ctb],
Madhusudhan Ginnaram [ctb],
Merck & Co., Inc., Rahway, NJ, [...truncated...]
Maintainer: Yujie Zhao <yujie.zhao@merck.com>
Diff between forestly versions 0.1.4 dated 2026-02-18 and 0.1.5 dated 2026-06-12
DESCRIPTION | 16 +- MD5 | 44 +++---- NEWS.md | 8 + R/ae_forestly.R | 126 +++++++++++--------- R/ae_listing.R | 107 +++++++++++------ R/format_ae_forestly.R | 8 + R/prepare_ae_forestly.R | 33 ++++- build/vignette.rds |binary inst/doc/customize-ae-specific-columns.html | 16 +- inst/doc/customize-color.html | 16 +- inst/doc/customize-diff-label.html | 16 +- inst/doc/customize-digits.html | 16 +- inst/doc/customize-display-only-soc.html | 16 +- inst/doc/customize-listing-columns.html | 16 +- inst/doc/customize-toggle-buttons.html | 18 +- inst/doc/customize-width.R | 82 +++++++++++++ inst/doc/customize-width.Rmd | 100 +++++++++++++++- inst/doc/customize-width.html | 174 +++++++++++++++++++++++++--- inst/doc/customize-xlimit.html | 16 +- inst/doc/forest-plot-static.html | 2 man/ae_forestly.Rd | 2 man/prepare_ae_forestly.Rd | 10 + vignettes/customize-width.Rmd | 100 +++++++++++++++- 23 files changed, 729 insertions(+), 213 deletions(-)
Title: Datasets and Basic Statistics for Symbolic Data Analysis
Description: Provides benchmark datasets and foundational tools for Symbolic Data Analysis (SDA). The package includes functions for constructing symbolic data objects from classical data, converting among different interval-valued data formats, managing interval-valued, histogram-valued, modal-valued, and multi-valued data, and performing basic descriptive statistics. It is designed to support teaching, methodological research, and the development of SDA techniques.
Author: Po-Wei Chen [aut],
Chun-houh Chen [aut],
Han-Ming Wu [cre]
Maintainer: Han-Ming Wu <wuhm@g.nccu.edu.tw>
Diff between dataSDA versions 0.2.5 dated 2026-03-14 and 0.2.6 dated 2026-06-12
dataSDA-0.2.5/dataSDA/inst/doc/dataSDA_intro_files |only dataSDA-0.2.6/dataSDA/DESCRIPTION | 20 dataSDA-0.2.6/dataSDA/MD5 | 55 dataSDA-0.2.6/dataSDA/NAMESPACE | 1 dataSDA-0.2.6/dataSDA/NEWS.md | 33 dataSDA-0.2.6/dataSDA/R/data.R | 9157 +++++----- dataSDA-0.2.6/dataSDA/R/interval_dist.R | 764 dataSDA-0.2.6/dataSDA/R/interval_utils.R | 119 dataSDA-0.2.6/dataSDA/R/utilities.R | 198 dataSDA-0.2.6/dataSDA/README.md | 13 dataSDA-0.2.6/dataSDA/build/vignette.rds |binary dataSDA-0.2.6/dataSDA/data/environment.mix.rda |binary dataSDA-0.2.6/dataSDA/inst/doc/dataSDA_intro.R | 904 dataSDA-0.2.6/dataSDA/inst/doc/dataSDA_intro.Rmd | 923 - dataSDA-0.2.6/dataSDA/inst/doc/dataSDA_intro.html | 1059 - dataSDA-0.2.6/dataSDA/man/abalone.iGAP.Rd | 108 dataSDA-0.2.6/dataSDA/man/abalone.int.Rd | 106 dataSDA-0.2.6/dataSDA/man/aggregate_to_symbolic.Rd | 263 dataSDA-0.2.6/dataSDA/man/bats.int.Rd | 103 dataSDA-0.2.6/dataSDA/man/check_zero_width_intervals.Rd |only dataSDA-0.2.6/dataSDA/man/china_temp.int.Rd | 111 dataSDA-0.2.6/dataSDA/man/environment.mix.Rd | 129 dataSDA-0.2.6/dataSDA/man/face.iGAP.Rd | 98 dataSDA-0.2.6/dataSDA/man/interval_distance.Rd | 210 dataSDA-0.2.6/dataSDA/man/lisbon_air_quality.int.Rd | 114 dataSDA-0.2.6/dataSDA/man/mtcars.mix.Rd | 116 dataSDA-0.2.6/dataSDA/tests/testthat/test-aggregate_to_symbolic_zero_width.R |only dataSDA-0.2.6/dataSDA/tests/testthat/test-check_zero_width_intervals.R |only dataSDA-0.2.6/dataSDA/vignettes/dataSDA_intro.Rmd | 923 - 29 files changed, 8270 insertions(+), 7257 deletions(-)
Title: Downloading and Cleaning U.S. Macroeconomic Data
Description: Utilities to retrieve and tidy U.S. macroeconomic data series
from public government data providers. Functions streamline access to series
from the Federal Reserve Bank of St. Louis Federal Reserve Economic Data (FRED),
the Bureau of Labor Statistics flat files, and the Bureau of Economic
Analysis National Income and Product Accounts tables, then return
consistent, tidy data frames ready for modeling and graphics. The package includes
helpers for date alignment, log-linear projections, and common macro diagnostics,
along with convenience plot builders for quick publication-quality charts.
Author: Mike Konczal [aut, cre]
Maintainer: Mike Konczal <konczal@gmail.com>
Diff between tidyusmacro versions 0.1.0 dated 2025-09-30 and 0.2.0 dated 2026-06-12
DESCRIPTION | 16 +- MD5 | 41 +++--- NAMESPACE | 13 ++ NEWS.md | 42 ++++++ R/data-dallasTrimPCEcomponents.R |only R/getBLSFiles.R | 253 +++++++++++++++++++++++++++++---------- R/getDallasTrimPCE.R |only R/getFRED.R | 17 ++ R/getNIPAFiles.R | 2 R/getPCEInflation.R | 25 ++- R/getUnrateFRED.R | 2 R/logLinearProjection.R | 33 ++++- R/theme_esp.R | 51 ++++++- README.md | 171 +++++++++++++++++++++----- data/dallasTrimPCEcomponents.rda |only man/dallasTrimPCEcomponents.Rd |only man/getBLSFiles.Rd | 56 ++++++-- man/getDallasTrimPCE.Rd |only man/getFRED.Rd | 2 man/getNIPAFiles.Rd | 2 man/getPCEInflation.Rd | 25 ++- man/getUnrateFRED.Rd | 2 man/logLinearProjection.Rd | 5 tests |only 24 files changed, 579 insertions(+), 179 deletions(-)
Title: Synthesize Bio API Wrapper
Description: Access Synthesize Bio models from their API <https://app.synthesize.bio/> using
this wrapper that provides a convenient interface to the Synthesize Bio API, allowing users
to generate realistic gene expression data based on specified biological conditions. This package
enables researchers to easily access AI-generated transcriptomic data for various
modalities including bulk RNA-seq, single-cell RNA-seq, microarray data, and more.
Author: Synthesize Bio [aut, cre]
Maintainer: Synthesize Bio <candace@synthesize.bio>
Diff between rsynthbio versions 4.1.0 dated 2026-02-25 and 4.2.0 dated 2026-06-12
rsynthbio-4.1.0/rsynthbio/man/OUTPUT_TRANSFORMERS.Rd |only rsynthbio-4.1.0/rsynthbio/man/get_json.Rd |only rsynthbio-4.1.0/rsynthbio/man/get_output_transformer.Rd |only rsynthbio-4.1.0/rsynthbio/man/make_api_request.Rd |only rsynthbio-4.1.0/rsynthbio/man/poll_model_query.Rd |only rsynthbio-4.1.0/rsynthbio/man/start_model_query.Rd |only rsynthbio-4.1.0/rsynthbio/man/transform_baseline_output.Rd |only rsynthbio-4.1.0/rsynthbio/man/transform_metadata_output.Rd |only rsynthbio-4.2.0/rsynthbio/DESCRIPTION | 8 rsynthbio-4.2.0/rsynthbio/MD5 | 48 +-- rsynthbio-4.2.0/rsynthbio/NAMESPACE | 1 rsynthbio-4.2.0/rsynthbio/NEWS.md | 19 + rsynthbio-4.2.0/rsynthbio/R/call_model_api.R | 143 ++++++++-- rsynthbio-4.2.0/rsynthbio/R/output-transformers.R | 8 rsynthbio-4.2.0/rsynthbio/R/self-hosted.R |only rsynthbio-4.2.0/rsynthbio/R/utils.R | 96 ++++++ rsynthbio-4.2.0/rsynthbio/README.md | 102 +++++-- rsynthbio-4.2.0/rsynthbio/build/vignette.rds |binary rsynthbio-4.2.0/rsynthbio/inst/doc/available-metadata.Rmd |only rsynthbio-4.2.0/rsynthbio/inst/doc/available-metadata.html |only rsynthbio-4.2.0/rsynthbio/inst/doc/getting-started.Rmd | 6 rsynthbio-4.2.0/rsynthbio/inst/doc/getting-started.html | 8 rsynthbio-4.2.0/rsynthbio/inst/doc/self-hosted.R |only rsynthbio-4.2.0/rsynthbio/inst/doc/self-hosted.Rmd |only rsynthbio-4.2.0/rsynthbio/inst/doc/self-hosted.html |only rsynthbio-4.2.0/rsynthbio/man/SELF_HOSTED_TIMEOUT.Rd |only rsynthbio-4.2.0/rsynthbio/man/get_example_query.Rd | 19 + rsynthbio-4.2.0/rsynthbio/man/list_models.Rd | 18 + rsynthbio-4.2.0/rsynthbio/man/predict_query.Rd | 43 ++- rsynthbio-4.2.0/rsynthbio/tests/testthat/test-call_model_api.R | 4 rsynthbio-4.2.0/rsynthbio/tests/testthat/test-self-hosted.R |only rsynthbio-4.2.0/rsynthbio/vignettes/available-metadata.Rmd |only rsynthbio-4.2.0/rsynthbio/vignettes/getting-started.Rmd | 6 rsynthbio-4.2.0/rsynthbio/vignettes/self-hosted.Rmd |only 34 files changed, 442 insertions(+), 87 deletions(-)
Title: Compact Package Representations
Description: A tool, grammar, and standard to represent and exchange
R package source code as text files. Converts one or more source
packages to a text file and restores the package structures from the file.
Author: Nan Xiao [aut] ,
Yilong Zhang [aut],
Keaven Anderson [aut],
Amin Shirazi [ctb],
Jeff Cheng [ctb],
Danfeng Fu [ctb],
Benjamin Wang [aut],
Dickson Wanjau [aut, cre],
Merck & Co., Inc., Rahway, NJ, USA and its affiliates [cph]
Maintainer: Dickson Wanjau <dickson.wanjau@merck.com>
Diff between pkglite versions 0.2.5 dated 2026-02-24 and 0.2.6 dated 2026-06-12
DESCRIPTION | 14 MD5 | 204 NAMESPACE | 82 NEWS.md | 150 R/collate.R | 444 - R/collection.R | 516 - R/dictionary.R | 444 - R/pack.R | 654 - R/pkglite-package.R | 38 R/spec.R | 266 R/templates.R | 514 - R/unpack.R | 660 - R/utils-cli.R | 486 - R/utils.R | 262 README.md | 172 build/vignette.rds |binary inst/CITATION | 24 inst/doc/filecollection.R | 64 inst/doc/filecollection.Rmd | 164 inst/doc/filecollection.html | 600 - inst/doc/filespec.R | 90 inst/doc/filespec.Rmd | 244 inst/doc/filespec.html | 712 - inst/doc/format.R | 12 inst/doc/format.Rmd | 184 inst/doc/format.html | 374 inst/doc/pkglite.R | 150 inst/doc/pkglite.Rmd | 344 inst/doc/pkglite.html | 696 - inst/examples/pkg1/DESCRIPTION | 32 inst/examples/pkg1/NAMESPACE | 6 inst/examples/pkg1/NEWS.md | 10 inst/examples/pkg1/R/data.R | 12 inst/examples/pkg1/R/hello.R | 22 inst/examples/pkg1/R/pkg1-package.R | 4 inst/examples/pkg1/README.md | 6 inst/examples/pkg1/inst/extdata/dataset.tsv | 202 inst/examples/pkg1/man/dataset.Rd | 32 inst/examples/pkg1/man/hello_world.Rd | 34 inst/examples/pkg1/man/pkg1-package.Rd | 36 inst/examples/pkg1/vignettes/example.bib | 16 inst/examples/pkg1/vignettes/pkg1.Rmd | 44 inst/examples/pkg2/DESCRIPTION | 32 inst/examples/pkg2/NAMESPACE | 6 inst/examples/pkg2/NEWS.md | 10 inst/examples/pkg2/R/data.R | 12 inst/examples/pkg2/R/hello.R | 22 inst/examples/pkg2/R/pkg2-package.R | 4 inst/examples/pkg2/README.md | 6 inst/examples/pkg2/inst/extdata/dataset.tsv | 202 inst/examples/pkg2/man/dataset.Rd | 32 inst/examples/pkg2/man/hello_world.Rd | 34 inst/examples/pkg2/man/pkg2-package.Rd | 36 inst/examples/pkg2/vignettes/example.bib | 16 inst/examples/pkg2/vignettes/pkg2.Rmd | 44 inst/logo/logo.R | 26 man/collate.Rd | 80 man/ext_binary.Rd | 60 man/ext_text.Rd | 60 man/file_auto.Rd | 72 man/file_default.Rd | 58 man/file_ectd.Rd | 60 man/file_name_patterns.Rd | 68 man/file_spec.Rd | 114 man/file_spec_templates.Rd | 114 man/is_file_collection.Rd | 66 man/is_file_spec.Rd | 72 man/merge.file_collection.Rd | 84 man/pack.Rd | 118 man/pipe.Rd | 34 man/pkglite-package.Rd | 83 man/print.file_collection.Rd | 68 man/print.file_spec.Rd | 74 man/prune.Rd | 78 man/remove_content.Rd | 96 man/sanitize.Rd | 72 man/sanitize_file_collection.Rd | 66 man/unpack.Rd | 138 man/verify_ascii.Rd | 84 tests/testthat.R | 8 tests/testthat/_snaps/independent_test_pack/fc_to_text1.txt | 2156 ++-- tests/testthat/_snaps/independent_test_pack/fc_to_text2.txt | 2156 ++-- tests/testthat/_snaps/independent_test_pack/file_to_vec.txt | 2156 ++-- tests/testthat/_snaps/independent_test_pack/pack.txt | 4318 +++++----- tests/testthat/_snaps/independent_test_pack/read_file_text1.txt | 32 tests/testthat/_snaps/independent_test_pack/read_file_text2.txt | 6 tests/testthat/_snaps/independent_test_pack/read_file_text3.txt | 10 tests/testthat/_snaps/independent_test_pack/read_file_text4.txt | 6 tests/testthat/_snaps/independent_test_pack/read_file_text5.txt | 12 tests/testthat/helper.R | 216 tests/testthat/test-independent-test_dictionary.R | 324 tests/testthat/test-independent-test_file_spec.R | 122 tests/testthat/test-independent-test_templates.R | 1134 +- tests/testthat/test-independent-test_utils.R | 122 tests/testthat/test-independent_test_collate.R | 238 tests/testthat/test-independent_test_collection.R | 296 tests/testthat/test-independent_test_pack.R | 152 tests/testthat/test-independent_test_unpack.R | 186 vignettes/custom.css | 80 vignettes/filecollection.Rmd | 164 vignettes/filespec.Rmd | 244 vignettes/format.Rmd | 184 vignettes/pkglite.Rmd | 344 103 files changed, 13065 insertions(+), 12922 deletions(-)
Title: Marker-Based Estimation of Heritability Using Individual Plant
or Plot Data
Description: Implements marker-based estimation of heritability when observations on genetically identical replicates are available. These can be either observations on individual plants or plot-level data in a field trial. Heritability can then be estimated using a mixed model for the individual plant or plot data. For comparison, also mixed-model based estimation using genotypic means and estimation of repeatability with ANOVA are implemented. For illustration the package contains several datasets for the model species Arabidopsis thaliana.
Author: Willem Kruijer [aut],
Ian White [ctb] ,
Padraic Flood [dtc],
Rik Kooke [dtc],
Bart-Jan van Rossum [cre, aut]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between heritability versions 1.4 dated 2023-08-24 and 1.5 dated 2026-06-12
DESCRIPTION | 37 ++- MD5 | 24 +- R/AI_algorithm.R | 498 ++++++++++++++++++++++---------------------- R/AI_algorithm_weights.r | 434 +++++++++++++++++++------------------- R/GINV.R | 2 R/KinshipTransform.R | 2 R/marker_h2_means.r | 2 man/BT_LW_H.Rd | 2 man/heritability-package.Rd | 4 man/leafArea.Rd | 2 man/marker_h2.Rd | 2 man/marker_h2_means.Rd | 2 man/repeatability.Rd | 4 13 files changed, 516 insertions(+), 499 deletions(-)
Title: Automated Mendelian Randomization Workflows and Visualizations
Description: Provides tools to summarize, analyze, and visualize results
from Mendelian randomization studies using summarized genetic
association data. The package includes functions for generating forest
plots and scatter plots at the single-nucleotide polymorphism
and Mendelian randomization method levels, and for fitting multiple
estimators in a unified workflow, including inverse-variance weighted
estimation, Mendelian randomization Egger regression,
the weighted median estimator, the robust adjusted
profile score, Mendelian randomization pleiotropy residual sum
and outlier, Mendelian randomization with the genotype
recoding invariance property, and a Bayesian horseshoe
method. Related methods are described by Burgess (2013)
<doi:10.1002/gepi.21758>, Bowden (2015) <doi:10.1093/ije/dyv080>,
Bowden (2016) <doi:10.1002/gepi.21965>, Zhao (2020)
<doi:10.1214/19-AOS1866>, Verbanck (2018)
<doi:10.1038/s41588-018-0099-7>, Dudbridge (2025)
<doi:10.1371/journal.pgen.1011 [...truncated...]
Author: Kelin Zhong [aut, cre],
Chia-Ling Kuo [aut]
Maintainer: Kelin Zhong <kelinzhonguconn@gmail.com>
Diff between autoMR versions 1.1.2 dated 2026-05-02 and 1.2.0 dated 2026-06-12
DESCRIPTION | 6 MD5 | 23 +-- NAMESPACE | 2 R/copied_functions.R | 104 ++++++++++----- R/global_Variables.R | 2 R/mr_forest.R | 15 -- R/mr_scatter_class.R | 3 R/mr_workflows.R | 299 ++++++++++++++++++++++++++++++++++---------- man/GWAS_forest.Rd | 2 man/export_scatter_plots.Rd | 3 man/mr_grip.Rd |only man/plot_mr_scatter.Rd | 11 + man/run_mr_analysis.Rd | 3 13 files changed, 341 insertions(+), 132 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-17 0.4.0
2026-03-11 0.3.0
2026-03-05 0.2.0
2026-02-13 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-08 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-01 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-20 2.0.1
2022-10-21 2.0.0
2022-06-17 1.5.0
2022-03-21 1.0.0