Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data
distributions are visualized. This package offers a flexible,
layer-based, and easy to use approach to create thematic maps, such as
choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Jakub Nowosad [ctb],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb],
John Clouse [ctb],
Robin Lovelace [ctb],
Jannes Muenchow [ctb],
Olivier Roy [ctb],
Edzer Pebesma [ctb],
Hugh [...truncated...]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 4.3 dated 2026-04-20 and 4.4 dated 2026-06-14
DESCRIPTION | 16 +- MD5 | 282 ++++++++++++++++++------------------ NAMESPACE | 32 ++++ NEWS.md | 15 + R/basemap_equivalents.R |only R/doc_units.R |only R/docs.R | 140 +++++++++++++++++ R/messages.R | 15 + R/misc_crs.R | 2 R/misc_text.R | 29 +++ R/process_breaks.R | 4 R/process_meta.R | 38 +++- R/qtm.R | 9 + R/shiny.R | 55 +------ R/shiny_dispatch.R |only R/shiny_grid.R |only R/shiny_leaflet.R |only R/spatial_sf.R | 14 + R/spatial_stars.R | 18 ++ R/spatial_terra.R | 39 ++++ R/step1_helper_facets.R | 18 ++ R/step2_data.R | 19 ++ R/step4_plot.R | 49 ++++-- R/tm_add_legend.R | 1 R/tm_animate.R | 3 R/tm_chart.R | 2 R/tm_component_functions.R | 30 ++- R/tm_components.R | 7 R/tm_crs.R | 10 - R/tm_facets.R | 2 R/tm_group.R | 2 R/tm_inset.R | 1 R/tm_label_format.R | 1 R/tm_layers_aux.R | 31 +-- R/tm_layers_circles.R |only R/tm_layers_iso.R | 4 R/tm_layers_lines.R | 53 ++++-- R/tm_layers_polygons.R | 144 +++++++++++++++--- R/tm_layers_raster.R | 10 + R/tm_layers_rgb.R | 8 - R/tm_layers_sf.R | 43 +++-- R/tm_layers_symbols.R | 69 +++++++- R/tm_layers_text.R | 29 ++- R/tm_layout.R | 16 +- R/tm_legend.R | 6 R/tm_options.R | 4 R/tm_popup.R |only R/tm_pos.R | 2 R/tm_scale_.R | 17 +- R/tm_scale_bivariate.R | 2 R/tm_shape.R | 17 +- R/tm_vars.R | 1 R/tmapChart.R | 14 + R/tmapGridAux_tiles.R | 10 + R/tmapGridComp.R | 17 +- R/tmapGridComp_funs.R | 21 +- R/tmapGridDataPlot_circles.R |only R/tmapGridDataPlot_polygons.R | 12 - R/tmapGridDataPlot_raster.R | 10 + R/tmapGridDataPlot_text.R | 10 - R/tmapGridRun.R | 22 ++ R/tmapGridShape.R | 2 R/tmapGrid_misc.R | 13 + R/tmapLeaflet.R | 10 + R/tmapLeafletArrange.R | 25 +-- R/tmapLeafletAux.R | 22 ++ R/tmapLeafletComp.R | 4 R/tmapLeafletComp_funs.R | 7 R/tmapLeafletDataPlot_circles.R |only R/tmapLeafletDataPlot_lines.R | 18 +- R/tmapLeafletDataPlot_polygons.R | 30 +++ R/tmapLeafletDataPlot_raster.R | 1 R/tmapLeafletDataPlot_symbols.R | 179 +++++++++++++++++++--- R/tmapLeafletDataPlot_text.R | 2 R/tmapOnLoad.R | 37 +--- R/tmapScaleContinuous.R | 4 R/tmapScaleDiscrete.R | 2 R/tmapScaleIntervals.R | 4 R/tmapScale_.R | 12 + R/tmapScale_defaults.R | 13 + R/tmapShape_misc.R | 39 ++++ R/tmapTrans.R | 1 R/tmap_arrange.R | 98 ++++++------ R/tmap_export.R | 11 + R/tmap_mode.R | 141 ++++++++++++------ R/tmap_options.R | 17 +- R/tmap_options_defaults.R | 6 R/tmap_providers.R | 36 +++- R/tmap_save.R | 44 +++++ R/view_format_popups.R | 86 ++++++---- build/partial.rdb |binary man/qtm.Rd | 10 + man/renderTmap.Rd | 18 ++ man/tm_add_legend.Rd | 3 man/tm_animate.Rd | 17 ++ man/tm_basemap.Rd | 18 +- man/tm_chart.Rd | 4 man/tm_circles.Rd |only man/tm_compass.Rd | 4 man/tm_components.Rd | 9 - man/tm_credits.Rd | 4 man/tm_crs.Rd | 10 - man/tm_facets.Rd | 2 man/tm_grid.Rd | 18 +- man/tm_group.Rd | 2 man/tm_inset.Rd | 5 man/tm_iso.Rd | 4 man/tm_label_format.Rd | 3 man/tm_layout.Rd | 20 ++ man/tm_legend.Rd | 12 + man/tm_lines.Rd | 157 +++++++++++++++----- man/tm_logo.Rd | 4 man/tm_minimap.Rd | 4 man/tm_mouse_coordinates.Rd | 4 man/tm_options.Rd | 11 - man/tm_plot.Rd | 5 man/tm_polygons.Rd | 137 ++++++++++++++--- man/tm_popup.Rd |only man/tm_pos.Rd | 2 man/tm_raster.Rd | 103 +++++++++++-- man/tm_rgb.Rd | 8 - man/tm_scale.Rd | 2 man/tm_scale_asis.Rd | 2 man/tm_scale_bivariate.Rd | 2 man/tm_scale_categorical.Rd | 2 man/tm_scale_continuous.Rd | 2 man/tm_scale_discrete.Rd | 2 man/tm_scale_intervals.Rd | 4 man/tm_scale_rank.Rd | 2 man/tm_scale_rgb.Rd | 2 man/tm_scalebar.Rd | 22 +- man/tm_sf.Rd | 114 ++++++++++++-- man/tm_shape.Rd | 14 + man/tm_symbols.Rd | 105 +++++++++---- man/tm_text.Rd | 123 ++++++++++++--- man/tm_title.Rd | 4 man/tm_vars.Rd | 3 man/tm_view.Rd | 12 - man/tmapGridLeaflet.Rd | 55 ++++++- man/tmapSubmitBasemapEquivalents.Rd |only man/tmap_animation.Rd | 62 ++----- man/tmap_arrange.Rd | 8 - man/tmap_internal.Rd | 22 +- man/tmap_leaflet.Rd | 8 - man/tmap_mode.Rd | 62 +++---- man/tmap_options.Rd | 21 +- man/tmap_providers.Rd | 42 +++-- man/tmap_save.Rd | 56 +++++-- 148 files changed, 2645 insertions(+), 995 deletions(-)
Title: R Package for the Smoking History Generator
Description: Efficient R interface to the Cancer Intervention and Surveillance
Modeling Network (CISNET) Smoking History Generator microsimulation
engine, which synthesizes individual smoking histories
(initiation, cessation, intensity) and ages at death from calibrated
initiation, cessation, cigarettes-per-day, and mortality tables. The
wrapper exposes fixed-cohort and population data-frame simulation,
multi-threaded segmentation, reproducible pseudo-random streams
(L'Ecuyer RngStream MRG32k3a or Matsumoto--Nishimura Mersenne Twister),
legacy CLI-style configuration files, and portable YAML configuration
save/load with optional split smoking and mortality parameter bundles.
Methods follow Jeon et al. (2012) <doi:10.1111/j.1539-6924.2011.01775.x>.
Random number generators: Matsumoto and Nishimura (1998)
<doi:10.1145/272991.272995>; L'Ecuyer (1999) <doi:10.1287/opre.47.1.159>;
L'Ecuyer et al. (2002) <doi:10.1287/opre.50.6.1073.358>.
Author: John Clarke [aut, cre] ,
Ben Racine [aut] ,
Martin Krapcho [aut] ,
Alexander Gaenko [aut] ,
Makoto Matsumoto [ctb, cph] ; copyright notice in source),
Takuji Nishimura [ctb, cph] ; copyright notice in source),
Pierre L'Ecuyer [ctb, cph] ;
copyright n [...truncated...]
Maintainer: John Clarke <john.clarke@cornerstonenw.com>
Diff between SmokingHistoryGenerator versions 6.5.3-1.0.1 dated 2026-06-12 and 7.0.0 dated 2026-06-14
SmokingHistoryGenerator-6.5.3-1.0.1/SmokingHistoryGenerator/inst/extdata/2018/mortality |only SmokingHistoryGenerator-6.5.3-1.0.1/SmokingHistoryGenerator/inst/extdata/2018/smoking |only SmokingHistoryGenerator-6.5.3-1.0.1/SmokingHistoryGenerator/tests/testdata/NHIS-1965-2018 |only SmokingHistoryGenerator-6.5.3-1.0.1/SmokingHistoryGenerator/tools |only SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/DESCRIPTION | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/MD5 | 119 +++----- SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/NEWS.md | 36 ++ SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/R/load_params.R | 69 +++- SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/README.md | 48 --- SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/build/partial.rdb |binary SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/inst/extdata/2018/mort |only SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/inst/extdata/2018/smok |only SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/man/SmokingHistoryGenerator-package.Rd | 2 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/man/shg_load_params.Rd | 2 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/src/main.cpp | 73 +---- SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/src/smoking_sim.cpp | 146 ++++++++-- SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/src/version.h | 4 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/src/wrapper.cpp | 22 - SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/src/wrapper.h | 12 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/fixtures/2018/MT/yob_1950_cessation_0.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/fixtures/2018/MT/yob_2010_cessation_2050.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/fixtures/2018/RS/yob_1950_cessation_0.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/fixtures/2018/RS/yob_2010_cessation_2050.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/inputs/test_input_MersenneTwister_1950_0.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/inputs/test_input_MersenneTwister_2010_2050.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/inputs/test_input_RngStream_1950_0.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/inputs/test_input_RngStream_2010_2050.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/outputs/test_output_MersenneTwister_2010_2050.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/outputs/test_output_RngStream_1950_0.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/outputs/test_output_RngStream_2010_2050.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/templates/test_input_example.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/testdata/2018 |only SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/testdata/legacy-web-examples/test_input_example_MersenneTwister.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/testdata/legacy-web-examples/test_input_example_RngStream.txt | 8 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/testthat/test-basic.R | 22 - SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/testthat/test-config-bundle.R | 14 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/testthat/test-load-params.R | 12 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/testthat/test-nhis-partial-inputs.R | 20 - SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/testthat/test-race-default.R |only SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/testthat/test-rs-segment-remainder.R | 6 SmokingHistoryGenerator-7.0.0/SmokingHistoryGenerator/tests/testthat/test-sim-bundle-config.R | 2 41 files changed, 416 insertions(+), 313 deletions(-)
More information about SmokingHistoryGenerator at CRAN
Permanent link
Title: Processing METAR Weather Reports
Description: Allows to download current and historical METAR weather reports
extract and parse basic parameters and present main weather information.
Current reports are downloaded from Aviation Weather Center
<https://aviationweather.gov/data/metar/> and historical reports from
Iowa Environmental Mesonet web page of Iowa State University
ASOS-AWOS-METAR <http://mesonet.agron.iastate.edu/AWOS/>.
Author: Pawel Cwiek [aut, cre],
David Megginson [ctb] ,
Greg Thompson [ctb]
Maintainer: Pawel Cwiek <prc.altodato@gmail.com>
Diff between pmetar versions 0.7.0 dated 2026-01-15 and 0.7.1 dated 2026-06-14
DESCRIPTION | 8 ++-- MD5 | 20 +++++----- R/metar_get.R | 9 ++++ R/metar_get_historical.R | 58 ++++++++++++++++++++++++----- build/vignette.rds |binary data/ourairports.rda |binary inst/doc/pmetar.html | 18 ++++----- man/metar_get_historical.Rd | 3 - man/pmetar-package.Rd | 5 ++ tests/testthat/test_metar_get_historical.R | 2 - tests/testthat/test_metar_location.R | 4 +- 11 files changed, 89 insertions(+), 38 deletions(-)
Title: Análisis Computacional de Eventos de Protesta
Description: La librería 'ACEP' contiene funciones específicas para
desarrollar análisis computacional de eventos de protesta. Asimismo,
contiene bases de datos con colecciones de notas sobre protestas y
diccionarios de palabras conflictivas. La colección de diccionarios
reune diccionarios de diferentes orígenes.
The 'ACEP' library contains specific functions to perform computational
analysis of protest events. It also contains a database with collections
of notes on protests and dictionaries of conflicting words. Collection
of dictionaries that brings together dictionaries from different sources.
Author: Agustin Nieto [aut, cre]
Maintainer: Agustin Nieto <agustin.nieto77@gmail.com>
Diff between ACEP versions 0.1.1 dated 2026-05-14 and 0.1.2 dated 2026-06-14
ACEP-0.1.1/ACEP/man/proteger_arrays_schema.Rd |only ACEP-0.1.1/ACEP/vignettes/geocode_cache.json |only ACEP-0.1.2/ACEP/DESCRIPTION | 15 ACEP-0.1.2/ACEP/LICENSE | 4 ACEP-0.1.2/ACEP/MD5 | 243 - ACEP-0.1.2/ACEP/NAMESPACE | 131 ACEP-0.1.2/ACEP/NEWS.md | 299 + ACEP-0.1.2/ACEP/R/acep_bases.R | 96 ACEP-0.1.2/ACEP/R/acep_classes.R | 406 +- ACEP-0.1.2/ACEP/R/acep_claude.R | 487 +- ACEP-0.1.2/ACEP/R/acep_clean.R | 273 - ACEP-0.1.2/ACEP/R/acep_context.R | 210 - ACEP-0.1.2/ACEP/R/acep_count.R | 207 - ACEP-0.1.2/ACEP/R/acep_db.R | 96 ACEP-0.1.2/ACEP/R/acep_detect.R | 78 ACEP-0.1.2/ACEP/R/acep_diccionarios.R | 74 ACEP-0.1.2/ACEP/R/acep_extract.R | 119 ACEP-0.1.2/ACEP/R/acep_frec.R | 42 ACEP-0.1.2/ACEP/R/acep_gemini.R | 413 +- ACEP-0.1.2/ACEP/R/acep_gpt.R | 1052 ++--- ACEP-0.1.2/ACEP/R/acep_int.R | 54 ACEP-0.1.2/ACEP/R/acep_load_base.R | 88 ACEP-0.1.2/ACEP/R/acep_may.R | 66 ACEP-0.1.2/ACEP/R/acep_min.R | 66 ACEP-0.1.2/ACEP/R/acep_ollama.R | 682 +-- ACEP-0.1.2/ACEP/R/acep_openrouter.R | 986 ++--- ACEP-0.1.2/ACEP/R/acep_pipeline.R | 458 +- ACEP-0.1.2/ACEP/R/acep_plot_rst.R | 92 ACEP-0.1.2/ACEP/R/acep_plot_st.R | 136 ACEP-0.1.2/ACEP/R/acep_postag.R | 790 ++-- ACEP-0.1.2/ACEP/R/acep_postag_hibrido.R | 778 ++-- ACEP-0.1.2/ACEP/R/acep_prompt_gpt.R | 62 ACEP-0.1.2/ACEP/R/acep_rs.R | 53 ACEP-0.1.2/ACEP/R/acep_sst.R | 168 ACEP-0.1.2/ACEP/R/acep_svo.R | 550 +-- ACEP-0.1.2/ACEP/R/acep_together.R | 528 +- ACEP-0.1.2/ACEP/R/acep_token.R | 72 ACEP-0.1.2/ACEP/R/acep_token_plot.R | 166 ACEP-0.1.2/ACEP/R/acep_token_table.R | 75 ACEP-0.1.2/ACEP/R/acep_upos.R | 135 ACEP-0.1.2/ACEP/R/globals.R | 2 ACEP-0.1.2/ACEP/R/utils_dependencies.R | 40 ACEP-0.1.2/ACEP/R/utils_provider.R | 367 +- ACEP-0.1.2/ACEP/R/utils_validation.R | 352 - ACEP-0.1.2/ACEP/README.md | 666 +-- ACEP-0.1.2/ACEP/build/partial.rdb |binary ACEP-0.1.2/ACEP/build/vignette.rds |binary ACEP-0.1.2/ACEP/data/acep_bases.rda |binary ACEP-0.1.2/ACEP/inst/doc/conflictividad_soip.R | 392 +- ACEP-0.1.2/ACEP/inst/doc/conflictividad_soip.Rmd | 520 +- ACEP-0.1.2/ACEP/inst/doc/conflictividad_soip.html | 1326 +++---- ACEP-0.1.2/ACEP/inst/doc/extraccion_de_svo_con_acep.R | 220 - ACEP-0.1.2/ACEP/inst/doc/extraccion_de_svo_con_acep.Rmd | 566 +-- ACEP-0.1.2/ACEP/inst/doc/extraccion_de_svo_con_acep.html | 2162 ++++++------ ACEP-0.1.2/ACEP/inst/doc/extraccion_palabras_clave.R | 146 ACEP-0.1.2/ACEP/inst/doc/extraccion_palabras_clave.Rmd | 222 - ACEP-0.1.2/ACEP/inst/doc/extraccion_palabras_clave.html | 1044 ++--- ACEP-0.1.2/ACEP/inst/doc/limpieza_de_texto_con_acep.R | 772 ++-- ACEP-0.1.2/ACEP/inst/doc/limpieza_de_texto_con_acep.Rmd | 1012 ++--- ACEP-0.1.2/ACEP/inst/doc/limpieza_de_texto_con_acep.html | 1698 ++++----- ACEP-0.1.2/ACEP/inst/doc/tokenizar_con_acep.R | 64 ACEP-0.1.2/ACEP/inst/doc/tokenizar_con_acep.Rmd | 232 - ACEP-0.1.2/ACEP/inst/doc/tokenizar_con_acep.html | 949 ++--- ACEP-0.1.2/ACEP/man/acep_bases.Rd | 126 ACEP-0.1.2/ACEP/man/acep_claude.Rd | 6 ACEP-0.1.2/ACEP/man/acep_clean.Rd | 4 ACEP-0.1.2/ACEP/man/acep_count.Rd | 75 ACEP-0.1.2/ACEP/man/acep_db.Rd | 72 ACEP-0.1.2/ACEP/man/acep_detect.Rd | 74 ACEP-0.1.2/ACEP/man/acep_diccionarios.Rd | 106 ACEP-0.1.2/ACEP/man/acep_frec.Rd | 52 ACEP-0.1.2/ACEP/man/acep_gemini.Rd | 6 ACEP-0.1.2/ACEP/man/acep_gpt.Rd | 11 ACEP-0.1.2/ACEP/man/acep_int.Rd | 68 ACEP-0.1.2/ACEP/man/acep_load_base.Rd | 62 ACEP-0.1.2/ACEP/man/acep_min.Rd | 56 ACEP-0.1.2/ACEP/man/acep_openrouter.Rd | 6 ACEP-0.1.2/ACEP/man/acep_plot_rst.Rd | 58 ACEP-0.1.2/ACEP/man/acep_plot_st.Rd | 102 ACEP-0.1.2/ACEP/man/acep_prompt_gpt.Rd | 6 ACEP-0.1.2/ACEP/man/acep_rs.Rd | 75 ACEP-0.1.2/ACEP/man/acep_svo.Rd | 102 ACEP-0.1.2/ACEP/man/acep_together.Rd | 6 ACEP-0.1.2/ACEP/man/acep_token.Rd | 52 ACEP-0.1.2/ACEP/man/acep_token_plot.Rd | 62 ACEP-0.1.2/ACEP/man/acep_token_table.Rd | 58 ACEP-0.1.2/ACEP/man/acep_upos.Rd | 78 ACEP-0.1.2/ACEP/man/dot-acep_count_cache_key.Rd |only ACEP-0.1.2/ACEP/man/dot-acep_count_pattern.Rd |only ACEP-0.1.2/ACEP/man/dot-acep_escape_regex.Rd |only ACEP-0.1.2/ACEP/man/dot-acep_provider_http_error_message.Rd |only ACEP-0.1.2/ACEP/man/dot-acep_provider_post.Rd |only ACEP-0.1.2/ACEP/man/dot-acep_provider_strip_key.Rd |only ACEP-0.1.2/ACEP/man/dot-acep_regex_cache_max.Rd |only ACEP-0.1.2/ACEP/man/figures/logo.svg | 188 - ACEP-0.1.2/ACEP/tests/testthat.R | 8 ACEP-0.1.2/ACEP/tests/testthat/helper-fixtures.R | 90 ACEP-0.1.2/ACEP/tests/testthat/test-acep-fixes.R |only ACEP-0.1.2/ACEP/tests/testthat/test-acep-ollama.R | 19 ACEP-0.1.2/ACEP/tests/testthat/test-acep-provider-post.R |only ACEP-0.1.2/ACEP/tests/testthat/test-acep_claude.R | 16 ACEP-0.1.2/ACEP/tests/testthat/test-acep_clean.R | 284 - ACEP-0.1.2/ACEP/tests/testthat/test-acep_context.R | 18 ACEP-0.1.2/ACEP/tests/testthat/test-acep_count.R | 24 ACEP-0.1.2/ACEP/tests/testthat/test-acep_db.R | 48 ACEP-0.1.2/ACEP/tests/testthat/test-acep_detect.R | 70 ACEP-0.1.2/ACEP/tests/testthat/test-acep_extract.R | 16 ACEP-0.1.2/ACEP/tests/testthat/test-acep_frec.R | 38 ACEP-0.1.2/ACEP/tests/testthat/test-acep_gemini.R | 16 ACEP-0.1.2/ACEP/tests/testthat/test-acep_gpt.R | 17 ACEP-0.1.2/ACEP/tests/testthat/test-acep_int.R | 36 ACEP-0.1.2/ACEP/tests/testthat/test-acep_load_base.R | 24 ACEP-0.1.2/ACEP/tests/testthat/test-acep_may.R | 16 ACEP-0.1.2/ACEP/tests/testthat/test-acep_min.R | 16 ACEP-0.1.2/ACEP/tests/testthat/test-acep_openrouter.R | 16 ACEP-0.1.2/ACEP/tests/testthat/test-acep_sst.R | 212 - ACEP-0.1.2/ACEP/tests/testthat/test-acep_svo.R | 12 ACEP-0.1.2/ACEP/tests/testthat/test-acep_together.R | 16 ACEP-0.1.2/ACEP/tests/testthat/test-acep_token.R | 54 ACEP-0.1.2/ACEP/tests/testthat/test-acep_token_plot.R | 62 ACEP-0.1.2/ACEP/tests/testthat/test-acep_token_table.R | 40 ACEP-0.1.2/ACEP/tests/testthat/test-acep_upos.R | 13 ACEP-0.1.2/ACEP/tests/testthat/test-optimization-safety.R | 1110 +++--- ACEP-0.1.2/ACEP/vignettes/conflictividad_soip.Rmd | 520 +- ACEP-0.1.2/ACEP/vignettes/extraccion_de_svo_con_acep.Rmd | 566 +-- ACEP-0.1.2/ACEP/vignettes/extraccion_palabras_clave.Rmd | 222 - ACEP-0.1.2/ACEP/vignettes/limpieza_de_texto_con_acep.Rmd | 1012 ++--- ACEP-0.1.2/ACEP/vignettes/tokenizar_con_acep.Rmd | 232 - 128 files changed, 14885 insertions(+), 14471 deletions(-)
Title: Native and Extensible R Driver for 'Zarr'
Description: The 'Zarr' specification is widely used to build libraries for the storage and retrieval of n-dimensional array data from data stores ranging from local file systems to the cloud. This package is a native 'Zarr' implementation in R with support for all required features of 'Zarr' version 3. It is designed to be extensible such that new stores, codecs and extensions can be added easily.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between zarr versions 0.4.0 dated 2026-05-28 and 0.4.1 dated 2026-06-14
DESCRIPTION | 8 MD5 | 85 ++--- NEWS.md | 7 R/api.R | 4 R/array.R | 21 - R/array_builder.R | 13 R/group.R | 18 - R/node.R | 223 +++++++++++-- R/sharding.R | 4 R/zarr.R | 2 README.md | 8 man/array_builder.Rd | 208 ++++++------ man/chunk_grid_regular.Rd | 174 +++++----- man/chunk_grid_regular_IO.Rd | 148 ++++---- man/chunk_grid_sharded.Rd | 150 ++++---- man/chunk_grid_sharded_IO.Rd | 96 ++--- man/chunking.Rd | 78 ++-- man/zarr-package.Rd | 5 man/zarr.Rd | 314 +++++++++--------- man/zarr_array.Rd | 216 ++++++------ man/zarr_codec.Rd | 191 +++++------ man/zarr_codec_blosc.Rd | 165 +++++---- man/zarr_codec_bytes.Rd | 178 +++++----- man/zarr_codec_crc32c.Rd | 139 ++++---- man/zarr_codec_gzip.Rd | 154 ++++----- man/zarr_codec_sharding.Rd | 80 ++-- man/zarr_codec_transpose.Rd | 159 ++++----- man/zarr_codec_ucs4.Rd | 143 ++++---- man/zarr_codec_vlenutf8.Rd | 146 ++++---- man/zarr_codec_zstd.Rd | 154 ++++----- man/zarr_conv_ref.Rd | 122 +++---- man/zarr_conv_uom.Rd | 88 ++--- man/zarr_convention.Rd | 141 ++++---- man/zarr_data_type.Rd | 99 +++-- man/zarr_domain.Rd | 103 +++--- man/zarr_extension.Rd | 72 ++-- man/zarr_group.Rd | 364 +++++++++++---------- man/zarr_httpstore.Rd | 561 +++++++++++++++++---------------- man/zarr_localstore.Rd | 581 +++++++++++++++++----------------- man/zarr_memorystore.Rd | 493 +++++++++++++++-------------- man/zarr_node.Rd | 264 ++++++++++----- man/zarr_store.Rd | 662 ++++++++++++++++++++------------------- tests/testthat/test-attributes.R |only tests/testthat/test-sharding.R | 4 44 files changed, 3674 insertions(+), 3171 deletions(-)
Title: Hierarchical Piecewise Regression with Smoothed Change-Points
Description: Fits Bayesian hierarchical piecewise regression models with
multiple logistic-smoothed change-points. Non-linear parameters (change-point
locations and transition sharpness) and linear parameters can each be
conditioned on covariates and factors via flexible design matrices.
A random-intercept structure is supported for any parameter. Spike-and-slab
regularization is supported for selecting the number of breakpoints.
Posterior inference uses a Metropolis-within-Gibbs sampler implemented
in 'Rust' for speed. Methods are based on the smooth transition
piecewise regression model of Bacon and Watts (1971) <doi:10.2307/2334389>
and variable selection spike-and-slab priors of Kuo and Mallick (1998)
<https://www.jstor.org/stable/25053023>.
Author: Aidan D Bindoff [aut, cre]
Maintainer: Aidan D Bindoff <aidan.bindoff@utas.edu.au>
Diff between smoothbp versions 0.2.2 dated 2026-06-02 and 0.2.4 dated 2026-06-14
DESCRIPTION | 8 MD5 | 97 NAMESPACE | 4 NEWS.md | 13 R/extendr-wrappers.R | 4 R/methods_text.R |only R/postprocess.R | 2 R/priors.R | 13 R/recovery.R | 8 R/results_text.R |only R/simulate.R | 361 +-- R/smoothbp.R | 141 + R/smoothbp_ss.R | 113 - R/tab_model.R | 3 R/utils.R | 16 README.md | 36 build/partial.rdb |only inst/WORDLIST |only inst/doc/advanced-modeling.Rmd | 2 inst/doc/advanced-modeling.html | 2 inst/doc/brms-comparison.R | 116 + inst/doc/brms-comparison.Rmd | 2200 ++++++++++---------- inst/doc/brms-comparison.html | 1342 ++++++------ inst/doc/getting-started.R | 12 inst/doc/getting-started.Rmd | 871 ++++--- inst/doc/getting-started.html | 61 man/figures |only man/model_methods.Rd |only man/model_results.Rd |only man/simulate_smoothbp.Rd | 64 man/smoothbp.Rd | 18 man/smoothbp_priors.Rd | 8 man/smoothbp_ss.Rd | 7 man/update.smoothbp_fit.Rd | 5 src/Makevars.in | 6 src/Makevars.win.in | 6 src/rust/src/bridge.rs | 4 src/rust/src/lib.rs | 242 +- src/rust/src/model.rs | 26 src/rust/src/sampler.rs | 56 src/rust/src/sampler_re.rs | 1218 +++++++++-- tests/testthat/test-b0-bounds.R | 2 tests/testthat/test-brms-comparison.R | 2 tests/testthat/test-hierarchical.R | 6 tests/testthat/test-linear-bounds.R | 8 tests/testthat/test-smoothbp.R | 12 tests/testthat/test-spike-slab.R | 8 tests/testthat/test-update-recovery-hypothesis-bf.R |only tools/config.R | 8 tools/test_vignette_params.R |only tools/verify_mixing_changes.R | 8 vignettes/advanced-modeling.Rmd | 2 vignettes/brms-comparison.Rmd | 2200 ++++++++++---------- vignettes/getting-started.Rmd | 871 ++++--- 54 files changed, 6160 insertions(+), 4052 deletions(-)
Title: R Code for Mark Analysis
Description: An interface to the software package MARK that constructs input
files for MARK and extracts the output. MARK was developed by Gary White
and is freely available at <http://www.phidot.org/software/mark/downloads/>
but is not open source.
Author: Jeff Laake [cre, aut],
Eldar Rakhimberdiev [ctb],
Ben Augustine [ctb],
Daniel Turek [ctb],
Brett McClintock [ctb],
Jim Hines [ctb],
analysis from Bret Collier [ctb],
Jay Rotella [ctb],
David Pavlacky [ctb],
Andrew Paul [aut],
Luke Eberhart- Phillips [...truncated...]
Maintainer: Jeff Laake <jefflaake@gmail.com>
Diff between RMark versions 3.0.7 dated 2026-01-31 and 3.0.8 dated 2026-06-14
DESCRIPTION | 12 +++++++----- MD5 | 8 ++++---- NEWS | 8 ++++++++ R/mark.R | 6 ++---- R/zzz.R | 14 +++++++------- 5 files changed, 28 insertions(+), 20 deletions(-)
Title: Joint Modelling of Multivariate Longitudinal Data and
Time-to-Event Outcomes
Description: Fits the joint model proposed by Henderson and colleagues (2000)
<doi:10.1093/biostatistics/1.4.465>, but extended to the case of multiple
continuous longitudinal measures. The time-to-event data is modelled using a
Cox proportional hazards regression model with time-varying covariates. The
multiple longitudinal outcomes are modelled using a multivariate version of the
Laird and Ware linear mixed model. The association is captured by a multivariate
latent Gaussian process. The model is estimated using a Monte Carlo Expectation
Maximization algorithm. This project was funded by the Medical Research Council
(Grant number MR/M013227/1).
Author: Graeme L. Hickey [cre, aut] ,
Pete Philipson [aut] ,
Andrea Jorgensen [ctb] ,
Ruwanthi Kolamunnage-Dona [aut] ,
Paula Williamson [ctb] ,
Dimitris Rizopoulos [ctb, dtc] ,
Alessandro Gasparini [aut] ,
Medical Research Council [fnd]
Maintainer: Graeme L. Hickey <graemeleehickey@gmail.com>
Diff between joineRML versions 0.4.7 dated 2025-02-04 and 0.4.8 dated 2026-06-14
joineRML-0.4.7/joineRML/tests/testthat/Rplots.pdf |only joineRML-0.4.8/joineRML/DESCRIPTION | 34 ++++---- joineRML-0.4.8/joineRML/MD5 | 67 ++++++++-------- joineRML-0.4.8/joineRML/NAMESPACE | 1 joineRML-0.4.8/joineRML/NEWS.md | 26 ++++++ joineRML-0.4.8/joineRML/R/bootSE.R | 6 - joineRML-0.4.8/joineRML/R/dynLong.R | 4 joineRML-0.4.8/joineRML/R/dynSurv.R | 8 - joineRML-0.4.8/joineRML/R/hessian.R | 6 - joineRML-0.4.8/joineRML/R/initsSurv.R | 4 joineRML-0.4.8/joineRML/R/joineRML.R | 2 joineRML-0.4.8/joineRML/R/mjoint.R | 17 ++-- joineRML-0.4.8/joineRML/R/plot.ranef.mjoint.R | 5 - joineRML-0.4.8/joineRML/R/sampleData.R | 4 joineRML-0.4.8/joineRML/R/sigma.mjoint.R | 2 joineRML-0.4.8/joineRML/R/simData.R | 8 - joineRML-0.4.8/joineRML/R/vcov.mjoint.R | 5 - joineRML-0.4.8/joineRML/README.md | 22 +++-- joineRML-0.4.8/joineRML/build/partial.rdb |binary joineRML-0.4.8/joineRML/build/vignette.rds |binary joineRML-0.4.8/joineRML/inst/doc/joineRML-tidy.html | 13 +-- joineRML-0.4.8/joineRML/inst/doc/joineRML.html | 21 ++--- joineRML-0.4.8/joineRML/inst/doc/technical.pdf |binary joineRML-0.4.8/joineRML/man/dynLong.Rd | 2 joineRML-0.4.8/joineRML/man/dynSurv.Rd | 2 joineRML-0.4.8/joineRML/man/joineRML.Rd | 2 joineRML-0.4.8/joineRML/man/mjoint.Rd | 4 joineRML-0.4.8/joineRML/tests/testthat/helper-fits.R |only joineRML-0.4.8/joineRML/tests/testthat/test-#59.R | 1 joineRML-0.4.8/joineRML/tests/testthat/test-ancillary.R | 23 ++--- joineRML-0.4.8/joineRML/tests/testthat/test-boot.R | 21 +++-- joineRML-0.4.8/joineRML/tests/testthat/test-dynplot.R |only joineRML-0.4.8/joineRML/tests/testthat/test-dynpred.R |only joineRML-0.4.8/joineRML/tests/testthat/test-inputs.R | 5 - joineRML-0.4.8/joineRML/tests/testthat/test-methods.R |only joineRML-0.4.8/joineRML/tests/testthat/test-models.R | 36 ++++---- joineRML-0.4.8/joineRML/tests/testthat/test-tidy.R | 1 37 files changed, 206 insertions(+), 146 deletions(-)
Title: 'DataTables' 2.x for R
Description: A modern R binding for 'DataTables' V2 with modular
extension loading, 'Bootstrap 5' styling, 'Shiny' integration (proxy, events,
inline inputs), server-side processing helpers, and standalone (non-Shiny)
support. Configure 'DataTables' options directly via R lists, a 1:1 mapping
to the 'JavaScript' API.
Author: Andre Leite [aut, cre],
Marcos Wasilew [aut],
Hugo Vasconcelos [aut],
Carlos Amorin [aut],
Diogo Bezerra [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between DT2 versions 0.1.1 dated 2026-05-04 and 0.1.2 dated 2026-06-14
DT2-0.1.1/DT2/man/figures/diagrama-2025-09-11-2.pik |only DT2-0.1.1/DT2/man/figures/diagrama-2025-09-11.svg |only DT2-0.1.2/DT2/DESCRIPTION | 10 - DT2-0.1.2/DT2/MD5 | 69 +++++---- DT2-0.1.2/DT2/NEWS.md |only DT2-0.1.2/DT2/R/dt2.R | 15 ++ DT2-0.1.2/DT2/R/dt2_buttons.R | 6 DT2-0.1.2/DT2/R/dt2_formats.R | 40 ++--- DT2-0.1.2/DT2/R/dt2_html.R | 4 DT2-0.1.2/DT2/R/dt2_inputs.R | 4 DT2-0.1.2/DT2/R/dt2_options.R | 48 +++++- DT2-0.1.2/DT2/R/dt2_server_processing.R | 7 DT2-0.1.2/DT2/R/dt2_utils.R | 38 ++++- DT2-0.1.2/DT2/README.md | 14 + DT2-0.1.2/DT2/build/vignette.rds |binary DT2-0.1.2/DT2/inst/doc/extensions-guide.html | 28 +-- DT2-0.1.2/DT2/inst/doc/formatting.Rmd | 8 + DT2-0.1.2/DT2/inst/doc/formatting.html | 44 +++--- DT2-0.1.2/DT2/inst/doc/getting-started.Rmd | 4 DT2-0.1.2/DT2/inst/doc/getting-started.html | 143 ++++++++++---------- DT2-0.1.2/DT2/inst/doc/js-config.html | 52 +++---- DT2-0.1.2/DT2/inst/doc/shiny-integration.html | 4 DT2-0.1.2/DT2/man/dt2.Rd | 2 DT2-0.1.2/DT2/man/dt2_buttons.Rd | 8 + DT2-0.1.2/DT2/man/dt2_cols_escape.Rd | 6 DT2-0.1.2/DT2/man/dt2_language.Rd | 9 + DT2-0.1.2/DT2/man/dt2_order.Rd | 5 DT2-0.1.2/DT2/man/dt2_search_global.Rd | 4 DT2-0.1.2/DT2/man/dt2_theme.Rd | 2 DT2-0.1.2/DT2/man/dt2_use_buttons.Rd | 8 + DT2-0.1.2/DT2/man/figures/logo.pik |only DT2-0.1.2/DT2/man/figures/logo.svg |only DT2-0.1.2/DT2/man/render_dt2.Rd | 2 DT2-0.1.2/DT2/tests |only DT2-0.1.2/DT2/vignettes/formatting.Rmd | 8 + DT2-0.1.2/DT2/vignettes/getting-started.Rmd | 4 36 files changed, 382 insertions(+), 214 deletions(-)