Title: Calculation of 22 CAnonical Time-Series CHaracteristics
Description: Calculate 22 summary statistics coded in C on time-series vectors to enable
pattern detection, classification, and regression applications in the
feature space as proposed by Lubba et al. (2019) <doi:10.1007/s10618-019-00647-x>.
Author: Trent Henderson [cre, aut],
Carl Lubba [ctb],
Maximilian Muecke [ctb]
Maintainer: Trent Henderson <then6675@uni.sydney.edu.au>
Diff between Rcatch22 versions 0.2.3 dated 2024-10-02 and 0.2.5 dated 2026-06-15
DESCRIPTION | 23 +- MD5 | 14 - README.md | 29 +-- build/vignette.rds |binary inst/doc/Rcatch22.R | 10 - inst/doc/Rcatch22.html | 392 ++++++++++++++++++------------------------------- src/SP_Summaries.c | 4 src/catch22.cpp | 50 +----- 8 files changed, 199 insertions(+), 323 deletions(-)
Title: 3D Software Rasterizer
Description: Rasterize images using a 3D software renderer. 3D scenes are created either by importing external files, building scenes out of the included objects, or by constructing meshes manually. Supports point and directional lights, anti-aliased lines, shadow mapping, transparent objects, translucent objects, multiple materials types, reflection, refraction, environment maps, multicore rendering, bloom, tone-mapping, and screen-space ambient occlusion.
Author: Tyler Morgan-Wall [aut, cph, cre] ,
Syoyo Fujita [ctb, cph],
Vilya Harvey [ctb, cph],
G-Truc Creation [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayvertex versions 0.12.0 dated 2025-02-03 and 0.15.0 dated 2026-06-15
rayvertex-0.12.0/rayvertex/R/save_png.R |only rayvertex-0.12.0/rayvertex/man/generate_toon_outline.Rd |only rayvertex-0.12.0/rayvertex/man/run_documentation.Rd |only rayvertex-0.12.0/rayvertex/man/save_png.Rd |only rayvertex-0.12.0/rayvertex/src/stb |only rayvertex-0.12.0/rayvertex/src/tinyobj/tinyexr.h |only rayvertex-0.12.0/rayvertex/src/tonemap.cpp |only rayvertex-0.12.0/rayvertex/src/tonemap.h |only rayvertex-0.15.0/rayvertex/DESCRIPTION | 27 rayvertex-0.15.0/rayvertex/LICENSE |only rayvertex-0.15.0/rayvertex/MD5 | 196 +- rayvertex-0.15.0/rayvertex/NAMESPACE | 8 rayvertex-0.15.0/rayvertex/R/RcppExports.R | 8 rayvertex-0.15.0/rayvertex/R/add_plane_uv_mesh.R | 211 +- rayvertex-0.15.0/rayvertex/R/add_shape.R | 33 rayvertex-0.15.0/rayvertex/R/construct_mesh.R | 66 rayvertex-0.15.0/rayvertex/R/displace_mesh.R | 107 - rayvertex-0.15.0/rayvertex/R/displacement_sphere.R | 193 +- rayvertex-0.15.0/rayvertex/R/flip_orientation_mesh.R | 24 rayvertex-0.15.0/rayvertex/R/lights.R | 112 - rayvertex-0.15.0/rayvertex/R/lines.R | 149 - rayvertex-0.15.0/rayvertex/R/material_functions.R | 79 - rayvertex-0.15.0/rayvertex/R/objects.R | 1205 ++++++++-------- rayvertex-0.15.0/rayvertex/R/r_obj.R | 18 rayvertex-0.15.0/rayvertex/R/rasterize_lines.R | 211 +- rayvertex-0.15.0/rayvertex/R/rasterize_scene.R | 718 +++++---- rayvertex-0.15.0/rayvertex/R/rayvertex_classes.R | 910 +++++++----- rayvertex-0.15.0/rayvertex/R/scene_from_list.R | 57 rayvertex-0.15.0/rayvertex/R/smooth_normals_mesh.R | 45 rayvertex-0.15.0/rayvertex/R/subdivide_mesh.R | 73 rayvertex-0.15.0/rayvertex/R/swap_yz.R | 32 rayvertex-0.15.0/rayvertex/R/transform_mesh_functions.R | 313 ++-- rayvertex-0.15.0/rayvertex/R/util_functions.R | 101 - rayvertex-0.15.0/rayvertex/R/validate_mesh.R | 173 +- rayvertex-0.15.0/rayvertex/R/write_scene_to_obj.R | 409 +++-- rayvertex-0.15.0/rayvertex/inst/COPYRIGHTS | 27 rayvertex-0.15.0/rayvertex/man/add_light.Rd | 8 rayvertex-0.15.0/rayvertex/man/add_lines.Rd | 8 rayvertex-0.15.0/rayvertex/man/add_plane_uv_mesh.Rd | 8 rayvertex-0.15.0/rayvertex/man/add_shape.Rd | 6 rayvertex-0.15.0/rayvertex/man/add_sphere_uv_mesh.Rd | 5 rayvertex-0.15.0/rayvertex/man/arrow_mesh.Rd | 12 rayvertex-0.15.0/rayvertex/man/center_mesh.Rd | 4 rayvertex-0.15.0/rayvertex/man/change_material.Rd | 15 rayvertex-0.15.0/rayvertex/man/color_lines.Rd | 6 rayvertex-0.15.0/rayvertex/man/cone_mesh.Rd | 10 rayvertex-0.15.0/rayvertex/man/construct_mesh.Rd | 10 rayvertex-0.15.0/rayvertex/man/cube_mesh.Rd | 14 rayvertex-0.15.0/rayvertex/man/cylinder_mesh.Rd | 10 rayvertex-0.15.0/rayvertex/man/directional_light.Rd | 10 rayvertex-0.15.0/rayvertex/man/displace_mesh.Rd | 4 rayvertex-0.15.0/rayvertex/man/displacement_sphere.Rd | 40 rayvertex-0.15.0/rayvertex/man/flip_orientation_mesh.Rd | 10 rayvertex-0.15.0/rayvertex/man/generate_cornell_mesh.Rd | 30 rayvertex-0.15.0/rayvertex/man/generate_line.Rd | 8 rayvertex-0.15.0/rayvertex/man/get_mesh_bbox.Rd | 4 rayvertex-0.15.0/rayvertex/man/get_mesh_center.Rd | 4 rayvertex-0.15.0/rayvertex/man/lookat_transform.Rd |only rayvertex-0.15.0/rayvertex/man/material_list.Rd | 13 rayvertex-0.15.0/rayvertex/man/mesh3d_mesh.Rd | 14 rayvertex-0.15.0/rayvertex/man/normalize.Rd |only rayvertex-0.15.0/rayvertex/man/obj_mesh.Rd | 10 rayvertex-0.15.0/rayvertex/man/ply_mesh.Rd | 4 rayvertex-0.15.0/rayvertex/man/point_light.Rd | 36 rayvertex-0.15.0/rayvertex/man/r_obj.Rd | 6 rayvertex-0.15.0/rayvertex/man/rasterize_lines.Rd | 8 rayvertex-0.15.0/rayvertex/man/rasterize_scene.Rd | 51 rayvertex-0.15.0/rayvertex/man/rotate_lines.Rd | 12 rayvertex-0.15.0/rayvertex/man/rotate_mesh.Rd | 10 rayvertex-0.15.0/rayvertex/man/scale_lines.Rd | 8 rayvertex-0.15.0/rayvertex/man/scale_mesh.Rd | 4 rayvertex-0.15.0/rayvertex/man/scale_unit_mesh.Rd | 8 rayvertex-0.15.0/rayvertex/man/scene_from_list.Rd | 16 rayvertex-0.15.0/rayvertex/man/segment_mesh.Rd | 18 rayvertex-0.15.0/rayvertex/man/set_material.Rd | 17 rayvertex-0.15.0/rayvertex/man/smooth_normals_mesh.Rd | 22 rayvertex-0.15.0/rayvertex/man/sphere_mesh.Rd | 14 rayvertex-0.15.0/rayvertex/man/subdivide_mesh.Rd | 8 rayvertex-0.15.0/rayvertex/man/swap_yz.Rd | 14 rayvertex-0.15.0/rayvertex/man/text3d_mesh.Rd | 49 rayvertex-0.15.0/rayvertex/man/torus_mesh.Rd | 8 rayvertex-0.15.0/rayvertex/man/transform_mesh.Rd |only rayvertex-0.15.0/rayvertex/man/translate_lines.Rd | 8 rayvertex-0.15.0/rayvertex/man/translate_mesh.Rd | 4 rayvertex-0.15.0/rayvertex/man/write_scene_to_obj.Rd | 4 rayvertex-0.15.0/rayvertex/man/xy_rect_mesh.Rd | 10 rayvertex-0.15.0/rayvertex/man/xz_rect_mesh.Rd | 10 rayvertex-0.15.0/rayvertex/man/yz_rect_mesh.Rd | 8 rayvertex-0.15.0/rayvertex/src/GBuffer.h |only rayvertex-0.15.0/rayvertex/src/RcppExports.cpp | 24 rayvertex-0.15.0/rayvertex/src/displacement.cpp | 10 rayvertex-0.15.0/rayvertex/src/dummythreadpool.h |only rayvertex-0.15.0/rayvertex/src/filltri.cpp | 62 rayvertex-0.15.0/rayvertex/src/filltri.h | 6 rayvertex-0.15.0/rayvertex/src/load_obj.cpp | 3 rayvertex-0.15.0/rayvertex/src/load_ply.cpp | 3 rayvertex-0.15.0/rayvertex/src/material.h | 3 rayvertex-0.15.0/rayvertex/src/model.h | 38 rayvertex-0.15.0/rayvertex/src/rasterize_lines_rcpp.cpp | 2 rayvertex-0.15.0/rayvertex/src/rayimage.cpp | 99 - rayvertex-0.15.0/rayvertex/src/rayraster.cpp | 491 +++++- rayvertex-0.15.0/rayvertex/src/shaders.cpp | 374 ++++ rayvertex-0.15.0/rayvertex/src/shaders.h | 104 + rayvertex-0.15.0/rayvertex/tests |only 104 files changed, 4563 insertions(+), 2781 deletions(-)
Title: Network Meta-Analysis of Multiple Diagnostic Tests
Description: Provides statistical methods for network meta-analysis
of diagnostic tests to simultaneously compare multiple tests within a
missing data framework, including:
- Bayesian hierarchical model for network meta-analysis of multiple
diagnostic tests
(Ma, Lian, Chu, Ibrahim, and Chen (2018) <doi:10.1093/biostatistics/kxx025>)
- Bayesian Hierarchical Summary Receiver Operating Characteristic Model
for Network Meta-Analysis of Diagnostic Tests
(Lian, Hodges, and Chu (2019) <doi:10.1080/01621459.2018.1476239>).
Author: Xing Xing [aut, cre] ,
Boyang Lu [aut],
Lifeng Lin [aut],
Qinshu Lian [aut],
James S. Hodges [aut],
Yong Chen [aut],
Haitao Chu [aut]
Maintainer: Xing Xing <xxing@arizona.edu>
Diff between NMADTA versions 0.1.3 dated 2026-04-15 and 0.1.4 dated 2026-06-15
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Fitting and Testing Generalized Logistic Distributions
Description: Tools for the generalized logistic distribution (Type I,
also known as skew-logistic distribution), encompassing
basic distribution functions (p, q, d, r, score), maximum
likelihood estimation, and structural change methods.
Author: Achim Zeileis [aut, cre] ,
Thomas Windberger [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between glogis versions 1.0-2 dated 2022-04-19 and 1.0-3 dated 2026-06-15
glogis-1.0-2/glogis/NEWS |only glogis-1.0-3/glogis/DESCRIPTION | 18 ++++++++-------- glogis-1.0-3/glogis/MD5 | 18 ++++++++-------- glogis-1.0-3/glogis/NEWS.md |only glogis-1.0-3/glogis/R/glogisfit.R | 2 - glogis-1.0-3/glogis/README.md |only glogis-1.0-3/glogis/build/partial.rdb |binary glogis-1.0-3/glogis/inst/CITATION | 19 ++++++++--------- glogis-1.0-3/glogis/man/HICP.Rd | 2 - glogis-1.0-3/glogis/man/figures |only glogis-1.0-3/glogis/man/glogis.Rd | 2 - glogis-1.0-3/glogis/tests/Examples/glogis-Ex.Rout.save | 2 - 12 files changed, 34 insertions(+), 29 deletions(-)
Title: Generalised Joint Regression Modelling
Description: Routines for fitting various joint (and univariate) regression models, with several types of covariate effects, in the presence of equations' errors association.
Author: Giampiero Marra [aut, cre],
Rosalba Radice [aut]
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between GJRM versions 0.2-6.8 dated 2025-06-23 and 0.2-6.9 dated 2026-06-15
GJRM-0.2-6.8/GJRM/R/Reg2Copost.r |only GJRM-0.2-6.8/GJRM/R/int.rescheck.R |only GJRM-0.2-6.9/GJRM/ChangeLog | 3 GJRM-0.2-6.9/GJRM/DESCRIPTION | 13 GJRM-0.2-6.9/GJRM/MD5 | 285 - GJRM-0.2-6.9/GJRM/NAMESPACE | 44 GJRM-0.2-6.9/GJRM/R/CopulaCLM.r | 8 GJRM-0.2-6.9/GJRM/R/SemiParBIV.fit.R | 23 GJRM-0.2-6.9/GJRM/R/SemiParBIV.fit.post.r | 8 GJRM-0.2-6.9/GJRM/R/SemiParBIV.r | 8 GJRM-0.2-6.9/GJRM/R/SemiParROY.r | 17 GJRM-0.2-6.9/GJRM/R/SemiParTRIV.r | 2 GJRM-0.2-6.9/GJRM/R/ass.dp.r | 38 GJRM-0.2-6.9/GJRM/R/bCopulaCLMgHsCont.R | 103 GJRM-0.2-6.9/GJRM/R/bCopulaCLMgHsOrd.R | 97 GJRM-0.2-6.9/GJRM/R/bcont.R | 71 GJRM-0.2-6.9/GJRM/R/bcont23.R | 66 GJRM-0.2-6.9/GJRM/R/bcont23twoParC.R | 4 GJRM-0.2-6.9/GJRM/R/bcont3.R | 64 GJRM-0.2-6.9/GJRM/R/bcont32.R | 66 GJRM-0.2-6.9/GJRM/R/bcont32twoParC.R | 4 GJRM-0.2-6.9/GJRM/R/bcont3twoParC.R | 4 GJRM-0.2-6.9/GJRM/R/bcontROB.R | 9 GJRM-0.2-6.9/GJRM/R/bcontSurv.R | 69 GJRM-0.2-6.9/GJRM/R/bcontSurvG.R | 88 GJRM-0.2-6.9/GJRM/R/bcontSurvGBIN.R | 83 GJRM-0.2-6.9/GJRM/R/bcontSurvGBINROY.R | 21 GJRM-0.2-6.9/GJRM/R/bcontSurvGBINss.R | 20 GJRM-0.2-6.9/GJRM/R/bcontSurvGDep.R | 86 GJRM-0.2-6.9/GJRM/R/bcontSurvGDepA.R | 82 GJRM-0.2-6.9/GJRM/R/bcontSurvG_extended.R | 381 +- GJRM-0.2-6.9/GJRM/R/bcontSurvGcont2Surv.R | 82 GJRM-0.2-6.9/GJRM/R/bcontSurvGuniv.R | 4 GJRM-0.2-6.9/GJRM/R/bcontSurvGunivI.R | 4 GJRM-0.2-6.9/GJRM/R/bcontSurvGunivI_ExcessHazard.R | 4 GJRM-0.2-6.9/GJRM/R/bcontSurvGunivInform.r | 4 GJRM-0.2-6.9/GJRM/R/bcontSurvGunivL.R | 4 GJRM-0.2-6.9/GJRM/R/bcontSurvGunivL_ExcessHazard.R | 4 GJRM-0.2-6.9/GJRM/R/bcontSurvGunivMIXED.R | 4 GJRM-0.2-6.9/GJRM/R/bcontSurvGunivMIXED_ExcessHazard.R | 4 GJRM-0.2-6.9/GJRM/R/bcontSurvGunivMIXED_ExcessHazard_LeftTruncation.R | 2 GJRM-0.2-6.9/GJRM/R/bcontSurvGunivMIXED_LeftTruncation.R | 4 GJRM-0.2-6.9/GJRM/R/bcontSurvGuniv_ExcessHazard.R | 4 GJRM-0.2-6.9/GJRM/R/bcontThetaOnly.R | 248 - GJRM-0.2-6.9/GJRM/R/bconttwoParC.R | 3 GJRM-0.2-6.9/GJRM/R/bcorrecDiscr.R | 6 GJRM-0.2-6.9/GJRM/R/bcorrecFuncs.R | 1534 +++++++++- GJRM-0.2-6.9/GJRM/R/bcountThetaOnly.R |only GJRM-0.2-6.9/GJRM/R/bdiscrcont.R | 122 GJRM-0.2-6.9/GJRM/R/bdiscrcont12.R | 110 GJRM-0.2-6.9/GJRM/R/bdiscrcont13.R | 100 GJRM-0.2-6.9/GJRM/R/bdiscrcont23.R | 103 GJRM-0.2-6.9/GJRM/R/bdiscrcontThetaOnly.R |only GJRM-0.2-6.9/GJRM/R/bdiscrdiscr.R | 82 GJRM-0.2-6.9/GJRM/R/bdiscrdiscr11.R | 84 GJRM-0.2-6.9/GJRM/R/bdiscrdiscr12.R | 78 GJRM-0.2-6.9/GJRM/R/bprobgHs.r | 67 GJRM-0.2-6.9/GJRM/R/bprobgHsBinROY.r | 9 GJRM-0.2-6.9/GJRM/R/bprobgHsCont.r | 79 GJRM-0.2-6.9/GJRM/R/bprobgHsCont2ROY.r | 16 GJRM-0.2-6.9/GJRM/R/bprobgHsCont3.r | 76 GJRM-0.2-6.9/GJRM/R/bprobgHsCont3ROY.r | 14 GJRM-0.2-6.9/GJRM/R/bprobgHsCont3SS.r | 5 GJRM-0.2-6.9/GJRM/R/bprobgHsCont3binTW.r | 74 GJRM-0.2-6.9/GJRM/R/bprobgHsCont3binTWSS.R | 5 GJRM-0.2-6.9/GJRM/R/bprobgHsContSS.r | 5 GJRM-0.2-6.9/GJRM/R/bprobgHsContUniv.r | 26 GJRM-0.2-6.9/GJRM/R/bprobgHsContUniv3.r | 22 GJRM-0.2-6.9/GJRM/R/bprobgHsContUnivBIN.r | 4 GJRM-0.2-6.9/GJRM/R/bprobgHsDiscr1.r | 72 GJRM-0.2-6.9/GJRM/R/bprobgHsDiscr1ROY.r | 13 GJRM-0.2-6.9/GJRM/R/bprobgHsDiscr1SS.r | 5 GJRM-0.2-6.9/GJRM/R/bprobgHsDiscr2.r | 71 GJRM-0.2-6.9/GJRM/R/bprobgHsDiscr2ROY.r | 14 GJRM-0.2-6.9/GJRM/R/bprobgHsDiscr2SS.r | 5 GJRM-0.2-6.9/GJRM/R/bprobgHsPO.r | 3 GJRM-0.2-6.9/GJRM/R/bprobgHsPO0.r | 1 GJRM-0.2-6.9/GJRM/R/bprobgHsSS.r | 7 GJRM-0.2-6.9/GJRM/R/bprobgHstwoParC.r | 5 GJRM-0.2-6.9/GJRM/R/cond.mv.R | 604 +++ GJRM-0.2-6.9/GJRM/R/cond.mv.pcc.R |only GJRM-0.2-6.9/GJRM/R/copgHs.r | 14 GJRM-0.2-6.9/GJRM/R/copgHsAT.r | 164 + GJRM-0.2-6.9/GJRM/R/copgHsCont.r | 14 GJRM-0.2-6.9/GJRM/R/copgHsContFM.r |only GJRM-0.2-6.9/GJRM/R/copgHsCountFM.r |only GJRM-0.2-6.9/GJRM/R/copula.prob.r | 145 GJRM-0.2-6.9/GJRM/R/copulaReg.fit.post.r | 10 GJRM-0.2-6.9/GJRM/R/copulaSampleSel.r | 10 GJRM-0.2-6.9/GJRM/R/distrHsATDiscr.r | 9 GJRM-0.2-6.9/GJRM/R/distrHsATDiscr2.r | 14 GJRM-0.2-6.9/GJRM/R/distrHsDiscr.r | 59 GJRM-0.2-6.9/GJRM/R/edf.loop.r | 6 GJRM-0.2-6.9/GJRM/R/eta.tr.R | 2 GJRM-0.2-6.9/GJRM/R/form.eq12.r | 7 GJRM-0.2-6.9/GJRM/R/func.OPT.r | 8 GJRM-0.2-6.9/GJRM/R/gamlss.R | 6 GJRM-0.2-6.9/GJRM/R/gjrm.pcc.r |only GJRM-0.2-6.9/GJRM/R/gjrm.r | 78 GJRM-0.2-6.9/GJRM/R/hfunc.R |only GJRM-0.2-6.9/GJRM/R/jc.probs1.r | 531 --- GJRM-0.2-6.9/GJRM/R/jc.probs2.r | 268 - GJRM-0.2-6.9/GJRM/R/jc.probs3.r | 105 GJRM-0.2-6.9/GJRM/R/jc.probs4.r | 214 - GJRM-0.2-6.9/GJRM/R/jc.probs5.r | 158 - GJRM-0.2-6.9/GJRM/R/jc.probs7.r | 44 GJRM-0.2-6.9/GJRM/R/jc.probs8.r | 56 GJRM-0.2-6.9/GJRM/R/jc.probs9.r |only GJRM-0.2-6.9/GJRM/R/k.tau.R | 7 GJRM-0.2-6.9/GJRM/R/marg.mv.r | 20 GJRM-0.2-6.9/GJRM/R/numch.r | 2 GJRM-0.2-6.9/GJRM/R/numgh.r | 8 GJRM-0.2-6.9/GJRM/R/plot.SemiParBIV.r | 16 GJRM-0.2-6.9/GJRM/R/pp.r | 40 GJRM-0.2-6.9/GJRM/R/ppROY.r | 8 GJRM-0.2-6.9/GJRM/R/pream.wm.r | 31 GJRM-0.2-6.9/GJRM/R/predict.SemiParBIV.r | 13 GJRM-0.2-6.9/GJRM/R/print.gjrm.pcc.r |only GJRM-0.2-6.9/GJRM/R/print.gjrm.r | 23 GJRM-0.2-6.9/GJRM/R/print.summary.gjrm.pcc.r |only GJRM-0.2-6.9/GJRM/R/print.summary.gjrm.r | 43 GJRM-0.2-6.9/GJRM/R/pscr0.r | 12 GJRM-0.2-6.9/GJRM/R/r.resp.R | 8 GJRM-0.2-6.9/GJRM/R/rIC.R | 2 GJRM-0.2-6.9/GJRM/R/res.check.R | 761 +++- GJRM-0.2-6.9/GJRM/R/resp.check.R | 79 GJRM-0.2-6.9/GJRM/R/rob.const.R | 4 GJRM-0.2-6.9/GJRM/R/sim.resp.R | 7 GJRM-0.2-6.9/GJRM/R/startsn.r | 62 GJRM-0.2-6.9/GJRM/R/summary.gjrm.pcc.r |only GJRM-0.2-6.9/GJRM/R/summary.gjrm.r | 3 GJRM-0.2-6.9/GJRM/R/susu.r | 14 GJRM-0.2-6.9/GJRM/R/susutsn.r | 73 GJRM-0.2-6.9/GJRM/R/teta.tr.R | 42 GJRM-0.2-6.9/GJRM/R/theta2tau.r | 131 GJRM-0.2-6.9/GJRM/man/GJRM-package.Rd | 4 GJRM-0.2-6.9/GJRM/man/bprobgHsContUniv.Rd | 14 GJRM-0.2-6.9/GJRM/man/cond.mv.Rd | 16 GJRM-0.2-6.9/GJRM/man/cond.mv.pcc.Rd |only GJRM-0.2-6.9/GJRM/man/copgHs.Rd | 2 GJRM-0.2-6.9/GJRM/man/copula.prob.Rd | 28 GJRM-0.2-6.9/GJRM/man/gamlss.Rd | 12 GJRM-0.2-6.9/GJRM/man/gjrm.Rd | 68 GJRM-0.2-6.9/GJRM/man/gjrm.pcc.Rd |only GJRM-0.2-6.9/GJRM/man/hfunc.Rd |only GJRM-0.2-6.9/GJRM/man/marg.mv.Rd | 7 GJRM-0.2-6.9/GJRM/man/mc.copula.prob.Rd |only GJRM-0.2-6.9/GJRM/man/print.gjrm.Rd | 13 GJRM-0.2-6.9/GJRM/man/res.check.Rd | 9 GJRM-0.2-6.9/GJRM/man/rob.const.Rd | 1 GJRM-0.2-6.9/GJRM/man/rob.int.Rd | 1 GJRM-0.2-6.9/GJRM/man/rpcc.Rd |only GJRM-0.2-6.9/GJRM/man/summary.gjrm.pcc.Rd |only 153 files changed, 6150 insertions(+), 2919 deletions(-)
Title: Echo State Networks for Time Series Modeling and Forecasting
Description: Provides a lightweight implementation of functions and methods for
fast and fully automatic time series modeling and forecasting using Echo
State Networks (ESNs).
Author: Alexander Haeusser [aut, cre, cph]
Maintainer: Alexander Haeusser <alexander-haeusser@gmx.de>
Diff between echos versions 1.0.3 dated 2026-02-21 and 1.0.4 dated 2026-06-15
DESCRIPTION | 6 - MD5 | 56 ++++++++------- NEWS.md | 10 ++ R/data.R | 129 ++++++++++++++++++++++++------------ R/methods-fable.R | 15 +++- R/train_esn.R | 30 ++++++++ R/tune_esn.R | 32 ++++++++ README.md | 30 +++++++- data/m4_data.rda |binary data/m4_monthly_subset.rda |only inst/doc/vignette_01_baseR.Rmd | 13 +++ inst/doc/vignette_01_baseR.html | 40 ++++++++++- inst/doc/vignette_02_tidyR.R | 2 inst/doc/vignette_02_tidyR.Rmd | 8 -- inst/doc/vignette_02_tidyR.html | 8 +- inst/doc/vignette_03_datasets.R | 4 - inst/doc/vignette_03_datasets.Rmd | 8 +- inst/doc/vignette_03_datasets.html | 12 +-- man/ESN.Rd | 15 +++- man/figures/README-base-1.svg | 4 - man/figures/logo.png |binary man/m4_data.Rd | 30 ++------ man/m4_monthly_subset.Rd |only man/synthetic_data.Rd | 54 +++++++++------ man/train_esn.Rd | 31 ++++++++ man/tune_esn.Rd | 37 ++++++++-- tests/testthat/test-methods-fable.R | 4 - vignettes/vignette_01_baseR.Rmd | 13 +++ vignettes/vignette_02_tidyR.Rmd | 8 -- vignettes/vignette_03_datasets.Rmd | 8 +- 30 files changed, 435 insertions(+), 172 deletions(-)
Title: Extension to 'tmap' for Creating Network Visualizations
Description: Provides functions for visualizing networks with 'tmap'. It supports 'sfnetworks' objects natively but is not limited to them. Useful for adding network layers such as edges and nodes to 'tmap' maps. More features may be added in future versions.
Author: Martijn Tennekes [aut, cre],
Andrea Gilardi [aut] ,
Robin Lovelace [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap.networks versions 0.2 dated 2026-05-09 and 0.2-1 dated 2026-06-15
DESCRIPTION | 6 ++-- MD5 | 14 +++++----- NEWS | 3 ++ R/tm_layers_edges.R | 71 ++++++++++++++++++++++++++++++---------------------- R/tm_layers_nodes.R | 42 ++++++++++++++---------------- man/tm_edges.Rd | 58 +++++++++++++++++++++++++----------------- man/tm_network.Rd | 2 - man/tm_nodes.Rd | 62 +++++++++++++++++++++++++++------------------ 8 files changed, 148 insertions(+), 110 deletions(-)
Title: Extensions to 'tmap' with Two New Modes: 'mapbox' and 'maplibre'
Description: The 'tmap' package provides two plotting modes for static and interactive thematic maps. This package extends 'tmap' with two additional modes based on 'Mapbox GL JS' and 'MapLibre GL JS'. These modes feature interactive vector tiles, globe views, and other modern web-mapping capabilities, while maintaining a consistent 'tmap' interface across all plotting modes.
Author: Martijn Tennekes [aut, cre]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap.mapgl versions 0.2-1 dated 2026-05-09 and 0.3 dated 2026-06-15
tmap.mapgl-0.2-1/tmap.mapgl/R/mapgl_arrange.R |only tmap.mapgl-0.2-1/tmap.mapgl/R/mapgl_shiny.R |only tmap.mapgl-0.3/tmap.mapgl/DESCRIPTION | 8 tmap.mapgl-0.3/tmap.mapgl/MD5 | 43 tmap.mapgl-0.3/tmap.mapgl/NAMESPACE | 15 tmap.mapgl-0.3/tmap.mapgl/NEWS | 10 tmap.mapgl-0.3/tmap.mapgl/R/mapgl_aux.R | 32 tmap.mapgl-0.3/tmap.mapgl/R/mapgl_init.R | 88 - tmap.mapgl-0.3/tmap.mapgl/R/mapgl_layers.R | 1131 +++++++++++++------- tmap.mapgl-0.3/tmap.mapgl/R/mapgl_legend.R | 228 +++- tmap.mapgl-0.3/tmap.mapgl/R/mapgl_misc.R | 25 tmap.mapgl-0.3/tmap.mapgl/R/mapgl_providers.R | 48 tmap.mapgl-0.3/tmap.mapgl/R/mapgl_run.R | 159 ++ tmap.mapgl-0.3/tmap.mapgl/R/mapgl_shape.R | 114 +- tmap.mapgl-0.3/tmap.mapgl/R/onload.R | 57 - tmap.mapgl-0.3/tmap.mapgl/R/shiny.R |only tmap.mapgl-0.3/tmap.mapgl/R/tm_layers_polygons_3d.R | 19 tmap.mapgl-0.3/tmap.mapgl/R/tm_mapbox.R | 6 tmap.mapgl-0.3/tmap.mapgl/R/tmapMapboxDataPlot.R | 8 tmap.mapgl-0.3/tmap.mapgl/R/tmapMaplibreDataPlot.R | 8 tmap.mapgl-0.3/tmap.mapgl/man/tm_mapbox.Rd | 4 tmap.mapgl-0.3/tmap.mapgl/man/tm_maplibre.Rd | 4 tmap.mapgl-0.3/tmap.mapgl/man/tm_polygons_3d.Rd | 15 tmap.mapgl-0.3/tmap.mapgl/man/tmapMapbox.Rd | 120 +- 24 files changed, 1571 insertions(+), 571 deletions(-)
Title: Extension to 'tmap' for Creating Glyphs
Description: Provides new layer functions to 'tmap' for drawing glyphs. A glyph is a small chart (e.g., donut chart) shown at specific map locations to visualize multivariate or time-series data. The functions work with the syntax of 'tmap' and allow flexible control over size, layout, and appearance.
Author: Martijn Tennekes [aut, cre]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap.glyphs versions 0.1-1 dated 2026-05-09 and 0.2 dated 2026-06-15
DESCRIPTION | 14 ++++--- MD5 | 26 ++++++------- NAMESPACE | 4 ++ NEWS | 3 + R/grob_functions.R | 14 ++++++- R/tm_layer_donuts.R | 44 ++++++++++++++++++----- R/tm_layer_flowers.R | 44 ++++++++++++++++++----- R/tmapGridDonuts.R | 29 ++++++++++++++- R/tmapGridFlowers.R | 25 ++++++++++++- R/tmapScaleComposition.R | 2 - R/tmapScaleMulti.R | 6 ++- man/internals_glyphs.Rd | 88 +++++++++++++++++++++++++++++++++++++++++++++++ man/tm_donuts.Rd | 30 +++++++++------- man/tm_flowers.Rd | 40 +++++++++++++++------ 14 files changed, 298 insertions(+), 71 deletions(-)
Title: List-Processing à La 'SRFI-1'
Description: Provides list-processing utilities inspired by the
'SRFI-1' list library for Scheme
(<https://srfi.schemers.org/srfi-1/srfi-1.html>), including
car/cdr family accessors, zip, pairwise, for.each,
pair.fold.right and friends. Higher-order helpers that are
orthogonal to list processing are deferred to the 'functional'
package; this package is freely a mixture of implementation and
API.
Author: Peter Danenberg [aut, cre]
Maintainer: Peter Danenberg <pcd@roxygen.org>
This is a re-admission after prior archival of version 0.1 dated 2012-01-12
Diff between lisp versions 0.1 dated 2012-01-12 and 0.2 dated 2026-06-15
lisp-0.1/lisp/TODO |only lisp-0.1/lisp/package.R |only lisp-0.2/lisp/DESCRIPTION | 33 ++++++++++++++++++++++----------- lisp-0.2/lisp/MD5 | 15 +++++++-------- lisp-0.2/lisp/NAMESPACE | 1 + lisp-0.2/lisp/R/lisp.R | 6 ++++++ lisp-0.2/lisp/inst |only lisp-0.2/lisp/man/last.Rd | 3 +++ lisp-0.2/lisp/man/pair.fold.right.Rd | 4 ++++ lisp-0.2/lisp/man/zip.with.names.Rd | 4 ++++ 10 files changed, 47 insertions(+), 19 deletions(-)
Title: Reconstruct Animal Paths from Solar Geolocation Loggers Data
Description: Spatio-temporal locations of an animal are computed
from annotated data with a hidden Markov model via particle
filter algorithm. The package is relatively robust to varying
degrees of shading.
The hidden Markov model is described in Movement Ecology - Rakhimberdiev et al. (2015) <doi:10.1186/s40462-015-0062-5>,
general package description is in the Methods in Ecology and Evolution - Rakhimberdiev et al. (2017) <doi:10.1111/2041-210X.12765>
and package accuracy assessed in the Journal of Avian Biology - Rakhimberdiev et al. (2016) <doi:10.1111/jav.00891>.
Author: Eldar Rakhimberdiev [aut, cre],
Anatoly Saveliev [aut],
Julia Karagicheva [aut],
Simeon Lisovski [ctb],
Johannes de Groeve [ctb]
Maintainer: Eldar Rakhimberdiev <eldar.rakhimberdiev@uva.nl>
Diff between FLightR versions 0.5.5 dated 2024-07-04 and 0.5.6 dated 2026-06-15
DESCRIPTION | 12 MD5 | 55 NEWS.md | 24 R/data_import.R | 37 R/data_preparation.R | 6 R/new_plotting_functions.R | 28 R/run_particle_filter.R | 805 ++++++++-- R/summary_functions.R | 2 R/validation_metrics.R |only README.md | 9 build/vignette.rds |binary inst/CITATION | 2 inst/doc/FLightR_with_black-tailed_godwit_vignette_from_MEE_2017.R | 82 - inst/doc/FLightR_with_black-tailed_godwit_vignette_from_MEE_2017.html | 481 ++++- man/find.stationary.location.Rd | 2 man/get.tags.data.Rd | 6 man/map.FLightR.ggmap.Rd | 10 man/match_gps_to_twilights.Rd |only man/plot_slopes_by_location.Rd | 2 man/plot_util_distr.Rd | 16 man/posterior_point_distribution.Rd |only man/read_gps_track.Rd |only man/read_validation_config.Rd |only man/run.particle.filter.Rd | 36 man/validation_summary.Rd |only tests/testthat/helper-source-checkout.R |only tests/testthat/test-cached-propagation.R |only tests/testthat/test-partial-cached-propagation.R |only tests/testthat/test-run-particle-filter-directions.R |only tests/testthat/test-run-particle-filter-threads.R |only tests/testthat/test-run-particle-filter-verbosity.R |only tests/testthat/test-transition-encoding.R |only tests/testthat/test-validation-metrics.R |only tests/testthat/test-weight-stack.R |only tests/testthat/test_data_processing.R | 30 tests/testthat/test_data_result_summary_and_plotting.R | 2 36 files changed, 1286 insertions(+), 361 deletions(-)
Title: Download Stats of R Packages
Description: Monthly download stats of 'CRAN' and 'Bioconductor' packages.
Download stats of 'CRAN' packages is from the 'RStudio' 'CRAN mirror', see <https://cranlogs.r-pkg.org:443>.
'Bioconductor' package download stats is at <https://bioconductor.org/packages/stats/>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between dlstats versions 0.1.7 dated 2023-05-24 and 0.1.8 dated 2026-06-15
DESCRIPTION | 8 - MD5 | 20 ++-- NAMESPACE | 6 + R/bioc_stats.R | 59 ++++++++++--- R/cran_stats.R | 76 +++++++++++------ R/dlstats-package.R |only R/plot_bioc_stats.R | 21 ++-- build/vignette.rds |binary inst/doc/dlstats.html | 219 ++++++++++++++++++++++++++++++++++++++++--------- man/bioc_stats.Rd | 9 +- man/cran_stats.Rd | 21 +--- man/dlstats-package.Rd |only 12 files changed, 324 insertions(+), 115 deletions(-)
Title: Multivariate Synthetic Control Method Using Time Series
Description: Three generalizations of the synthetic control method (which has
already an implementation in package 'Synth') are implemented: first,
'MSCMT' allows for using multiple outcome variables, second, time series
can be supplied as economic predictors, and third, a well-defined
cross-validation approach can be used.
Much effort has been taken to make the implementation as stable as possible
(including edge cases) without losing computational efficiency.
A detailed description of the main algorithms is given in
Becker and Klößner (2018) <doi:10.1016/j.ecosta.2017.08.002>.
Author: Martin Becker [aut, cre] ,
Stefan Kloessner [aut],
Karline Soetaert [com],
Jack Dongarra [cph],
R.J. Hanson [cph],
K.H. Haskell [cph],
Cleve Moler [cph],
LAPACK authors [cph]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>
Diff between MSCMT versions 1.4.3 dated 2026-05-26 and 1.4.4 dated 2026-06-15
DESCRIPTION | 8 MD5 | 14 - NEWS | 7 build/partial.rdb |binary inst/doc/CheckingSynth.html | 313 ++++++++-------------- inst/doc/UsingTimeSeries.html | 302 ++++++++------------- inst/doc/WorkingWithMSCMT.html | 572 ++++++++++++++--------------------------- src/solve.f | 4 8 files changed, 455 insertions(+), 765 deletions(-)
Title: Panel Evaluation in Forensic Kinship Analysis
Description: Evaluate specific panels in different aspects: i) Simulation tools related to pedigree researches; ii) calculation for systemic effectiveness indicators, such as probability of exclusion (PE).
Author: Guanju Ma [aut, cre],
Shujin Li [ctb]
Maintainer: Guanju Ma <guanjuma@hebmu.edu.cn>
Diff between KINSIMU versions 0.1.3 dated 2025-12-19 and 0.1.3-2 dated 2026-06-15
KINSIMU-0.1.3-2/KINSIMU/DESCRIPTION | 10 +++++----- KINSIMU-0.1.3-2/KINSIMU/MD5 | 14 +++++--------- KINSIMU-0.1.3-2/KINSIMU/NEWS.md | 5 ++++- KINSIMU-0.1.3-2/KINSIMU/man/FortytwoSTR.Rd | 1 - KINSIMU-0.1.3-2/KINSIMU/man/KINSIMU-package.Rd | 7 ++++++- KINSIMU-0.1.3-2/KINSIMU/man/pediexample.Rd | 1 - KINSIMU-0.1.3/KINSIMU/build |only KINSIMU-0.1.3/KINSIMU/inst/doc |only KINSIMU-0.1.3/KINSIMU/vignettes |only 9 files changed, 20 insertions(+), 18 deletions(-)
Title: Fast and Memory Efficient Fitting of Linear Models with
High-Dimensional Fixed Effects
Description: Fast and user-friendly estimation of generalized linear
models with multiple fixed effects and cluster the standard errors.
The method to obtain the estimated fixed-effects coefficients is based
on Stammann (2018) <doi:10.48550/arXiv.1707.01815>, Gaure (2013)
<doi:10.1016/j.csda.2013.03.024>, Berge (2018)
<https://ideas.repec.org/p/luc/wpaper/18-13.html>, and Correia et al.
(2020) <doi: 10.1177/1536867X20909691>. This implementation is
described in Vargas Sepulveda (2025)
<doi:10.1371/journal.pone.0331178>.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Joao Santos Silva [ths],
Yoto Yotov [ctb]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between capybara versions 1.8.0 dated 2025-08-27 and 2.0.0 dated 2026-06-15
capybara-1.8.0/capybara/R/apes.R |only capybara-1.8.0/capybara/R/apes_bias_helpers.R |only capybara-1.8.0/capybara/R/bias_corr.R |only capybara-1.8.0/capybara/R/cpp11.R |only capybara-1.8.0/capybara/data/trade_panel.rda |only capybara-1.8.0/capybara/man/apes.Rd |only capybara-1.8.0/capybara/man/bias_corr.Rd |only capybara-1.8.0/capybara/man/trade_panel.Rd |only capybara-1.8.0/capybara/src/01_center.h |only capybara-1.8.0/capybara/src/02_beta.h |only capybara-1.8.0/capybara/src/03_alpha.h |only capybara-1.8.0/capybara/src/04_lm.h |only capybara-1.8.0/capybara/src/05_glm_helpers.h |only capybara-1.8.0/capybara/src/06_glm.h |only capybara-1.8.0/capybara/src/07_negbin.h |only capybara-1.8.0/capybara/src/08_sums.h |only capybara-1.8.0/capybara/src/cpp11.cpp |only capybara-1.8.0/capybara/tests/testthat |only capybara-1.8.0/capybara/tests/testthat.R |only capybara-2.0.0/capybara/DESCRIPTION | 57 capybara-2.0.0/capybara/MD5 | 202 - capybara-2.0.0/capybara/NAMESPACE | 28 capybara-2.0.0/capybara/NEWS.md | 50 capybara-2.0.0/capybara/R/autoplot.R | 109 capybara-2.0.0/capybara/R/capybara-package.R | 149 capybara-2.0.0/capybara/R/cpp4r.R |only capybara-2.0.0/capybara/R/fe_table.R |only capybara-2.0.0/capybara/R/feglm.R | 484 +-- capybara-2.0.0/capybara/R/feglm_helpers.R | 694 +--- capybara-2.0.0/capybara/R/feglm_offset.R | 69 capybara-2.0.0/capybara/R/felm.R | 347 +- capybara-2.0.0/capybara/R/felm_helpers.R | 52 capybara-2.0.0/capybara/R/fenegbin.R | 378 +- capybara-2.0.0/capybara/R/fepoisson.R | 135 capybara-2.0.0/capybara/R/fepoisson_asymmetric.R |only capybara-2.0.0/capybara/R/fit_control.R | 402 +- capybara-2.0.0/capybara/R/fit_helpers.R | 641 +++- capybara-2.0.0/capybara/R/generics_augment.R | 75 capybara-2.0.0/capybara/R/generics_coef.R | 53 capybara-2.0.0/capybara/R/generics_confint.R | 76 capybara-2.0.0/capybara/R/generics_fitted.R | 27 capybara-2.0.0/capybara/R/generics_formula.R |only capybara-2.0.0/capybara/R/generics_glance.R | 64 capybara-2.0.0/capybara/R/generics_predict.R | 343 +- capybara-2.0.0/capybara/R/generics_print.R | 361 +- capybara-2.0.0/capybara/R/generics_summary.R | 130 capybara-2.0.0/capybara/R/generics_tidy.R | 43 capybara-2.0.0/capybara/R/generics_vcov.R | 488 +-- capybara-2.0.0/capybara/R/summary_table.R | 640 ++-- capybara-2.0.0/capybara/README.md | 124 capybara-2.0.0/capybara/build/vignette.rds |binary capybara-2.0.0/capybara/configure | 90 capybara-2.0.0/capybara/data/correia2019.rda |only capybara-2.0.0/capybara/data/ross2004.rda |only capybara-2.0.0/capybara/inst/CITATION |only capybara-2.0.0/capybara/inst/doc/asymmetric.R |only capybara-2.0.0/capybara/inst/doc/asymmetric.Rmd |only capybara-2.0.0/capybara/inst/doc/asymmetric.html |only capybara-2.0.0/capybara/inst/doc/intro.Rmd | 77 capybara-2.0.0/capybara/inst/doc/intro.html | 102 capybara-2.0.0/capybara/inst/doc/separation.R |only capybara-2.0.0/capybara/inst/doc/separation.Rmd |only capybara-2.0.0/capybara/inst/doc/separation.html |only capybara-2.0.0/capybara/inst/doc/variance-covariance.R |only capybara-2.0.0/capybara/inst/doc/variance-covariance.Rmd |only capybara-2.0.0/capybara/inst/doc/variance-covariance.html |only capybara-2.0.0/capybara/inst/templates |only capybara-2.0.0/capybara/inst/tinytest |only capybara-2.0.0/capybara/man/autoplot.Rd | 31 capybara-2.0.0/capybara/man/broom.Rd | 30 capybara-2.0.0/capybara/man/capybara-package.Rd | 24 capybara-2.0.0/capybara/man/correia2019.Rd |only capybara-2.0.0/capybara/man/fe_table.Rd |only capybara-2.0.0/capybara/man/feglm.Rd | 109 capybara-2.0.0/capybara/man/felm.Rd | 82 capybara-2.0.0/capybara/man/fenegbin.Rd | 70 capybara-2.0.0/capybara/man/fepoisson.Rd | 59 capybara-2.0.0/capybara/man/fepoisson_asymmetric.Rd |only capybara-2.0.0/capybara/man/fit_control.Rd | 240 - capybara-2.0.0/capybara/man/reexports.Rd | 4 capybara-2.0.0/capybara/man/ross2004.Rd |only capybara-2.0.0/capybara/man/sandwich_vcov.Rd |only capybara-2.0.0/capybara/man/summary_table.Rd | 20 capybara-2.0.0/capybara/man/update.feglm.Rd |only capybara-2.0.0/capybara/man/update.felm.Rd |only capybara-2.0.0/capybara/man/update.felm_formula.Rd |only capybara-2.0.0/capybara/man/vcov.feglm.Rd | 46 capybara-2.0.0/capybara/man/vcov.felm.Rd | 44 capybara-2.0.0/capybara/src/01_01_center_helpers.h |only capybara-2.0.0/capybara/src/01_02_center_acceleration.h |only capybara-2.0.0/capybara/src/01_03_center_stammann.h |only capybara-2.0.0/capybara/src/01_04_center_berge.h |only capybara-2.0.0/capybara/src/01_05_center.h |only capybara-2.0.0/capybara/src/02_chol.h |only capybara-2.0.0/capybara/src/03_beta.h |only capybara-2.0.0/capybara/src/04_alpha.h |only capybara-2.0.0/capybara/src/05_01_separation_helpers.h |only capybara-2.0.0/capybara/src/05_02_separation_relu.h |only capybara-2.0.0/capybara/src/05_03_separation_simplex.h |only capybara-2.0.0/capybara/src/05_04_separation.h |only capybara-2.0.0/capybara/src/06_01_fit_helpers.h |only capybara-2.0.0/capybara/src/06_02_fit_deviance.h |only capybara-2.0.0/capybara/src/06_03_fit_links.h |only capybara-2.0.0/capybara/src/06_04_fit_drop.h |only capybara-2.0.0/capybara/src/06_05_fit_vcov.h |only capybara-2.0.0/capybara/src/06_06_fit_sums.h |only capybara-2.0.0/capybara/src/07_lm.h |only capybara-2.0.0/capybara/src/08_glm.h |only capybara-2.0.0/capybara/src/09_negbin.h |only capybara-2.0.0/capybara/src/10_fepoisson_asymmetric.h |only capybara-2.0.0/capybara/src/11_formula_parser.h |only capybara-2.0.0/capybara/src/Makevars.in | 11 capybara-2.0.0/capybara/src/capybara.cpp | 2206 ++++++++++++-- capybara-2.0.0/capybara/src/cpp4r.cpp |only capybara-2.0.0/capybara/tests/tinytest.R |only capybara-2.0.0/capybara/vignettes/asymmetric.Rmd |only capybara-2.0.0/capybara/vignettes/intro.Rmd | 77 capybara-2.0.0/capybara/vignettes/separation.Rmd |only capybara-2.0.0/capybara/vignettes/variance-covariance.Rmd |only 119 files changed, 6178 insertions(+), 3365 deletions(-)
Title: Functional Utilities for Data Processing
Description: Covers several areas of data processing: batch-splitting, reading and writing of large
data files, data tiling, one-hot encoding and decoding of data tiles, stratified proportional
(random or probabilistic) data sampling, data normalization and thresholding, substring location
and commonalities inside strings, and location and tabulation of amino acids, modifications or
associated monoisotopic masses inside modified peptides. The extractor implements code from
'Matrix.utils', Varrichio C (2020), <https://cran.r-project.org/package=Matrix.utils>.
Author: Dragos Bandur [aut, cre]
Maintainer: Dragos Bandur <dbandur@sympatico.ca>
Diff between akin versions 0.3.6 dated 2026-06-07 and 0.3.7 dated 2026-06-15
DESCRIPTION | 11 ++++++----- MD5 | 18 +++++++++--------- NAMESPACE | 2 ++ NEWS.md | 8 ++++++++ R/cover.R | 6 +++--- R/fcommon.R | 28 +++++++++++----------------- R/utils.R | 18 ++++++++++++++++-- R/zzz.R | 1 + man/cover.Rd | 2 +- man/fcommon.Rd | 8 ++++---- 10 files changed, 61 insertions(+), 41 deletions(-)
Title: Clinical Trial Simulator
Description: Simulate phase II and/or phase III clinical trials. It supports various types of endpoints and adaptive strategies. Tools for carrying out graphical testing procedure and combination test under group sequential design are also provided.
Author: Han Zhang [cre, aut]
Maintainer: Han Zhang <zhangh.ustc@gmail.com>
Diff between TrialSimulator versions 1.18.4 dated 2026-05-13 and 1.20.1 dated 2026-06-15
DESCRIPTION | 6 MD5 | 62 ++- NAMESPACE | 1 NEWS.md | 23 + R/Arms.R | 2 R/Endpoint.R | 33 ++ R/Endpoints.R | 36 +- R/Regimens.R | 95 +++++- R/Trials.R | 442 +++++++++++++++++++++------- R/crossover.R |only R/regimen.R | 35 +- README.md | 2 build/vignette.rds |binary inst/doc/crossoverAtMilestone.R |only inst/doc/crossoverAtMilestone.Rmd |only inst/doc/crossoverAtMilestone.html |only inst/doc/crossoverWashout.html | 8 inst/doc/defineNonTimeToEventEndpoints.R | 12 inst/doc/defineNonTimeToEventEndpoints.Rmd | 21 + inst/doc/defineNonTimeToEventEndpoints.html | 278 +++++++++-------- inst/doc/dynamicTreatmentSwitching.R | 37 -- inst/doc/dynamicTreatmentSwitching.Rmd | 55 +-- inst/doc/dynamicTreatmentSwitching.html | 84 ++--- man/Endpoints.Rd | 7 man/Regimens.Rd | 90 ++++- man/Trials.Rd | 57 +++ man/crossover.Rd |only man/endpoint.Rd | 10 man/regimen.Rd | 30 + tests/testthat/test-crossover.R |only tests/testthat/test-endpoint.R |only tests/testthat/test-parallel.R | 6 tests/testthat/test-regimen.R | 5 vignettes/crossoverAtMilestone.Rmd |only vignettes/defineNonTimeToEventEndpoints.Rmd | 21 + vignettes/dynamicTreatmentSwitching.Rmd | 55 +-- 36 files changed, 1027 insertions(+), 486 deletions(-)
More information about TrialSimulator at CRAN
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Title: A Glimpse at the Diversity of Peru's Endemic Plants
Description: Provides an updated database of accepted endemic plant taxa from Peru. The current collection contains over 8,000 taxonomic records at species and infraspecific ranks. Data are derived from Govaerts, R., Nic Lughadha, E., Black, N. et al., 'The World Checklist of Vascular Plants: A continuously updated resource for exploring global plant diversity', published in Sci Data 8, 215 (2021) <doi:10.1038/s41597-021-00997-6>.
Author: Paul E. Santos Andrade [aut, cre] ,
Lucely L. Vilca Bustamante [aut]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
Diff between ppendemic versions 0.2.1 dated 2026-02-26 and 0.2.2 dated 2026-06-15
DESCRIPTION | 11 - MD5 | 45 +++-- R/direct_match.R | 3 R/fuzzy_match_genus.R | 9 - R/fuzzy_match_infraspp_within_species.R | 31 ++- R/fuzzy_match_spp_within_genus.R | 6 R/internal.R | 57 ++++-- R/is_ppendemic.R | 4 R/matching_ppendemic.R | 13 + R/ppendemic_data.R | 151 ++++++++++++++--- R/suffix_match_spp_within_genus.R | 6 README.md | 44 ++-- build |only data/ppendemic_tab16.rda |only inst/doc |only man/figures/README-unnamed-chunk-2-1.png |binary man/is_ppendemic.Rd | 4 man/matching_ppendemic.Rd | 10 + man/ppendemic_tab14.Rd | 36 ++-- man/ppendemic_tab15.Rd | 6 man/ppendemic_tab16.Rd |only tests/testthat/test_matching_ppendemic.R | 8 tests/testthat/test_matching_ppendemic_normalization.R | 15 + tests/testthat/test_matching_regressions.R |only tests/testthat/test_progress_option.R |only vignettes |only 26 files changed, 329 insertions(+), 130 deletions(-)
Title: Prescribe Sub-Symptom Exercise for Adolescent Concussion
Description: A clinical decision support system for sub-symptom threshold
aerobic exercise (SSTAE) prescription in adolescents with persistent
post-concussion symptoms (PPCS). Implements an evidence-based protocol
derived from a systematic review of seven studies (Li, 2026; <doi:10.17605/osf.io/kvuf6>),
encoding safety screening, Buffalo Concussion Treadmill Test (BCTT)-guided
heart rate prescription, session-level progress tracking, and evidence
disclosure using the Grading of Recommendations, Assessment, Development
and Evaluation (GRADE) framework into an open-source tool for athletic
trainers and clinicians. Designed to support implementation in
resource-limited settings where BCTT equipment may be unavailable.
GRADE certainty of evidence: LOW. For clinician use only; not a
substitute for clinical judgement.
Author: Guang Li [aut, cre]
Maintainer: Guang Li <contact@guanglab.org>
Diff between PPCSexRx versions 0.1.0 dated 2026-06-01 and 0.1.1 dated 2026-06-15
DESCRIPTION | 17 +++++++------ MD5 | 6 +++- NEWS.md |only README.md | 73 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++- inst/CITATION |only 5 files changed, 85 insertions(+), 11 deletions(-)
Title: Fast Interactive Data Analysis Pipelines
Description: A lightweight and intuitive framework for building interactive data
analysis pipelines. You add R functions one by one, and 'pipeflow'
wires them into a pipeline that stays consistent as you go. Modify,
remove, or insert steps at any stage, manage all parameters in one
place, fast execution (C++-powered DAG) for interactive use and Shiny
backends.
Author: Roman Pahl [aut, cre]
Maintainer: Roman Pahl <roman.pahl@gmail.com>
Diff between pipeflow versions 0.2.3 dated 2025-07-26 and 0.3.0 dated 2026-06-15
pipeflow-0.2.3/pipeflow/R/pkgname.R |only pipeflow-0.2.3/pipeflow/inst/doc/v05-split-and-combine.R |only pipeflow-0.2.3/pipeflow/inst/doc/v05-split-and-combine.Rmd |only pipeflow-0.2.3/pipeflow/inst/doc/v05-split-and-combine.html |only pipeflow-0.2.3/pipeflow/tests/testthat/test_pkgname.R |only pipeflow-0.2.3/pipeflow/vignettes/v05-split-and-combine.Rmd |only pipeflow-0.3.0/pipeflow/DESCRIPTION | 39 pipeflow-0.3.0/pipeflow/LICENSE |only pipeflow-0.3.0/pipeflow/MD5 | 183 pipeflow-0.3.0/pipeflow/NAMESPACE | 29 pipeflow-0.3.0/pipeflow/NEWS.md | 60 pipeflow-0.3.0/pipeflow/R/RcppExports.R |only pipeflow-0.3.0/pipeflow/R/aliases.R | 431 pipeflow-0.3.0/pipeflow/R/log.R | 28 pipeflow-0.3.0/pipeflow/R/param.R | 345 pipeflow-0.3.0/pipeflow/R/pipeflow-package.R |only pipeflow-0.3.0/pipeflow/R/pipeline.R | 4304 +++---- pipeflow-0.3.0/pipeflow/R/pipelineR6.R |only pipeflow-0.3.0/pipeflow/R/pipeline_helpers.R |only pipeflow-0.3.0/pipeflow/R/utils.R | 39 pipeflow-0.3.0/pipeflow/R/zzz.R |only pipeflow-0.3.0/pipeflow/build/vignette.rds |binary pipeflow-0.3.0/pipeflow/inst/doc/v01-get-started.R | 91 pipeflow-0.3.0/pipeflow/inst/doc/v01-get-started.Rmd | 225 pipeflow-0.3.0/pipeflow/inst/doc/v01-get-started.html | 535 pipeflow-0.3.0/pipeflow/inst/doc/v02-modify-pipeline.R | 148 pipeflow-0.3.0/pipeflow/inst/doc/v02-modify-pipeline.Rmd | 157 pipeflow-0.3.0/pipeflow/inst/doc/v02-modify-pipeline.html | 168 pipeflow-0.3.0/pipeflow/inst/doc/v03-combine-pipelines.R | 122 pipeflow-0.3.0/pipeflow/inst/doc/v03-combine-pipelines.Rmd | 224 pipeflow-0.3.0/pipeflow/inst/doc/v03-combine-pipelines.html | 381 pipeflow-0.3.0/pipeflow/inst/doc/v04-collect-output.R | 199 pipeflow-0.3.0/pipeflow/inst/doc/v04-collect-output.Rmd | 293 pipeflow-0.3.0/pipeflow/inst/doc/v04-collect-output.html | 489 pipeflow-0.3.0/pipeflow/inst/doc/v05-split-map-reduce.R |only pipeflow-0.3.0/pipeflow/inst/doc/v05-split-map-reduce.Rmd |only pipeflow-0.3.0/pipeflow/inst/doc/v05-split-map-reduce.html |only pipeflow-0.3.0/pipeflow/inst/doc/v06-self-modify-pipeline.R | 295 pipeflow-0.3.0/pipeflow/inst/doc/v06-self-modify-pipeline.Rmd | 484 pipeflow-0.3.0/pipeflow/inst/doc/v06-self-modify-pipeline.html | 765 - pipeflow-0.3.0/pipeflow/man/Extract.pipeflow_pip.Rd |only pipeflow-0.3.0/pipeflow/man/Pipeline.Rd | 2068 +-- pipeflow-0.3.0/pipeflow/man/length.pipeflow.Rd |only pipeflow-0.3.0/pipeflow/man/pip_add.Rd |only pipeflow-0.3.0/pipeflow/man/pip_add_from.Rd |only pipeflow-0.3.0/pipeflow/man/pip_bind.Rd |only pipeflow-0.3.0/pipeflow/man/pip_clone.Rd |only pipeflow-0.3.0/pipeflow/man/pip_collect_out.Rd |only pipeflow-0.3.0/pipeflow/man/pip_get_graph.Rd |only pipeflow-0.3.0/pipeflow/man/pip_get_params.Rd |only pipeflow-0.3.0/pipeflow/man/pip_has_step.Rd |only pipeflow-0.3.0/pipeflow/man/pip_lock.Rd |only pipeflow-0.3.0/pipeflow/man/pip_new.Rd |only pipeflow-0.3.0/pipeflow/man/pip_remove.Rd |only pipeflow-0.3.0/pipeflow/man/pip_rename.Rd |only pipeflow-0.3.0/pipeflow/man/pip_replace.Rd |only pipeflow-0.3.0/pipeflow/man/pip_run.Rd |only pipeflow-0.3.0/pipeflow/man/pip_set_params.Rd |only pipeflow-0.3.0/pipeflow/man/pip_tag.Rd |only pipeflow-0.3.0/pipeflow/man/pip_unlock.Rd |only pipeflow-0.3.0/pipeflow/man/pip_untag.Rd |only pipeflow-0.3.0/pipeflow/man/pip_view.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_add.Rd | 19 pipeflow-0.3.0/pipeflow/man/pipe_append.Rd | 13 pipeflow-0.3.0/pipeflow/man/pipe_append_to_step_names.Rd | 6 pipeflow-0.3.0/pipeflow/man/pipe_clone.Rd | 5 pipeflow-0.3.0/pipeflow/man/pipe_collect_out.Rd | 5 pipeflow-0.3.0/pipeflow/man/pipe_discard_steps.Rd | 6 pipeflow-0.3.0/pipeflow/man/pipe_get_data.Rd | 6 pipeflow-0.3.0/pipeflow/man/pipe_get_depends.Rd | 12 pipeflow-0.3.0/pipeflow/man/pipe_get_graph.Rd | 7 pipeflow-0.3.0/pipeflow/man/pipe_get_out.Rd | 6 pipeflow-0.3.0/pipeflow/man/pipe_get_params.Rd | 14 pipeflow-0.3.0/pipeflow/man/pipe_insert.Rd | 9 pipeflow-0.3.0/pipeflow/man/pipe_length.Rd | 5 pipeflow-0.3.0/pipeflow/man/pipe_lock_unlock.Rd | 7 pipeflow-0.3.0/pipeflow/man/pipe_new.Rd | 19 pipeflow-0.3.0/pipeflow/man/pipe_pop_step.Rd | 12 pipeflow-0.3.0/pipeflow/man/pipe_print.Rd | 5 pipeflow-0.3.0/pipeflow/man/pipe_remove_step.Rd | 5 pipeflow-0.3.0/pipeflow/man/pipe_rename_step.Rd | 5 pipeflow-0.3.0/pipeflow/man/pipe_replace_step.Rd | 7 pipeflow-0.3.0/pipeflow/man/pipe_reset.Rd | 6 pipeflow-0.3.0/pipeflow/man/pipe_run.Rd | 9 pipeflow-0.3.0/pipeflow/man/pipe_run_step.Rd | 5 pipeflow-0.3.0/pipeflow/man/pipe_set_data.Rd | 14 pipeflow-0.3.0/pipeflow/man/pipe_set_data_split.Rd | 21 pipeflow-0.3.0/pipeflow/man/pipe_set_keep_out.Rd | 14 pipeflow-0.3.0/pipeflow/man/pipe_set_params.Rd | 5 pipeflow-0.3.0/pipeflow/man/pipe_set_params_at_step.Rd | 6 pipeflow-0.3.0/pipeflow/man/pipe_split.Rd | 6 pipeflow-0.3.0/pipeflow/man/pipeflow-package.Rd |only pipeflow-0.3.0/pipeflow/man/print.Rd |only pipeflow-0.3.0/pipeflow/man/step_info.Rd | 14 pipeflow-0.3.0/pipeflow/src |only pipeflow-0.3.0/pipeflow/tests/testthat.R | 5 pipeflow-0.3.0/pipeflow/tests/testthat/helper_dag.R |only pipeflow-0.3.0/pipeflow/tests/testthat/helper_general.R | 20 pipeflow-0.3.0/pipeflow/tests/testthat/helper_test_data.R | 4 pipeflow-0.3.0/pipeflow/tests/testthat/test_RcppExports.R |only pipeflow-0.3.0/pipeflow/tests/testthat/test_aliases.R | 1163 - pipeflow-0.3.0/pipeflow/tests/testthat/test_log.R | 83 pipeflow-0.3.0/pipeflow/tests/testthat/test_param.R | 201 pipeflow-0.3.0/pipeflow/tests/testthat/test_pipeflow-package.R |only pipeflow-0.3.0/pipeflow/tests/testthat/test_pipeline.R | 6106 +++------- pipeflow-0.3.0/pipeflow/tests/testthat/test_pipelineR6.R |only pipeflow-0.3.0/pipeflow/tests/testthat/test_pipeline_helper.R |only pipeflow-0.3.0/pipeflow/tests/testthat/test_utils.R | 167 pipeflow-0.3.0/pipeflow/vignettes/articles |only pipeflow-0.3.0/pipeflow/vignettes/v01-get-started.Rmd | 225 pipeflow-0.3.0/pipeflow/vignettes/v02-modify-pipeline.Rmd | 157 pipeflow-0.3.0/pipeflow/vignettes/v03-combine-pipelines.Rmd | 224 pipeflow-0.3.0/pipeflow/vignettes/v04-collect-output.Rmd | 293 pipeflow-0.3.0/pipeflow/vignettes/v05-split-map-reduce.Rmd |only pipeflow-0.3.0/pipeflow/vignettes/v06-self-modify-pipeline.Rmd | 484 115 files changed, 9852 insertions(+), 11655 deletions(-)
Title: Joint Covariance and Treatment-Effect Tests for Multiple
Outcomes
Description: Fits generalized linear models, Cox proportional-hazards
models, log-rank tests, generalized estimating equations, mixed models
with repeated measures, Kaplan-Meier curves, quantile differences, and
hierarchical net-benefit (win-difference) and log win-ratio statistics
jointly across multiple endpoints, and returns the full asymptotic
covariance matrix linking them. Implements PATED (Prognostic Assisted
Treatment Effect Detection), a randomized-trial method that exploits
balanced prognostic covariates to tighten standard errors and increase
statistical power without introducing bias.
Author: Han Zhang [aut, cre]
Maintainer: Han Zhang <zhangh.ustc@gmail.com>
Diff between multipleOutcomes versions 0.16.2 dated 2026-05-18 and 0.18.1 dated 2026-06-15
DESCRIPTION | 24 ++++++------ MD5 | 43 +++++++++++++++------- NAMESPACE | 5 ++ NEWS.md | 31 +++++++++++++++ R/NetBenefitAdapter.R |only R/WinRatioAdapter.R |only R/computeNetBenefit.R |only R/jointCovariance.R | 5 +- R/make_adapter.R | 8 ++++ R/nb_endpoint.R |only R/netbenefit_.R |only R/oak.R |only R/pated.R | 7 ++- R/poplar.R |only R/winratio_.R |only data/oak.rda |only data/poplar.rda |only man/jointCovariance.Rd | 4 +- man/nb_endpoint.Rd |only man/netbenefit_.Rd |only man/oak.Rd |only man/pated.Rd | 7 ++- man/poplar.Rd |only man/winratio_.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/helper-sim-data.R | 29 ++++++++++++++ tests/testthat/test-inplace-formula.R |only tests/testthat/test-mc-cross-engine.R | 36 ++++++++++++++++++ tests/testthat/test-netbenefit-vs-fit_win_ratio.R |only tests/testthat/test-netbenefit.R |only tests/testthat/test-validation.R | 3 + tests/testthat/test-winratio.R |only 32 files changed, 168 insertions(+), 34 deletions(-)
More information about multipleOutcomes at CRAN
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Title: Multidimensional Poverty Index (MPI) via the Alkire-Foster
Method
Description: Estimate Multidimensional Poverty Index (MPI) measures from household
survey microdata using the Alkire-Foster dual-cutoff counting method (Alkire
and Foster, 2011). Load indicator
specifications from CSV, Excel, JSON, or plain-text files; compute the
headcount ratio (H), intensity (A), and MPI = H x A across any subgroup;
and export results to formatted Excel reports. Supports complex survey
designs — stratification, clustering, and probability weights — and
optionally appends design-based standard errors and confidence intervals.
Author: Bhas Abdulsamad [aut, cre, cph]
Maintainer: Bhas Abdulsamad <aeabdulsamad@gmail.com>
Diff between mpindex versions 0.2.1 dated 2024-01-09 and 0.3.0 dated 2026-06-15
mpindex-0.2.1/mpindex/R/data-df_household.R |only mpindex-0.2.1/mpindex/R/data-df_household_roster.R |only mpindex-0.2.1/mpindex/R/helpers.R |only mpindex-0.2.1/mpindex/R/save_mpi.R |only mpindex-0.2.1/mpindex/R/write-as-excel.R |only mpindex-0.3.0/mpindex/DESCRIPTION | 31 mpindex-0.3.0/mpindex/MD5 | 98 mpindex-0.3.0/mpindex/NAMESPACE | 6 mpindex-0.3.0/mpindex/NEWS.md | 41 mpindex-0.3.0/mpindex/R/compute-contribution.R | 55 mpindex-0.3.0/mpindex/R/compute-headcount-ratio-adjusted.R | 72 mpindex-0.3.0/mpindex/R/compute-headcount-ratio.R | 64 mpindex-0.3.0/mpindex/R/compute-mpi-from-profile.R |only mpindex-0.3.0/mpindex/R/compute-mpi.R | 386 - mpindex-0.3.0/mpindex/R/create-deprivation-matrix.R | 63 mpindex-0.3.0/mpindex/R/data-df-household-roster.R |only mpindex-0.3.0/mpindex/R/data-df-household.R |only mpindex-0.3.0/mpindex/R/data-helpers.R |only mpindex-0.3.0/mpindex/R/define-deprivation.R | 198 mpindex-0.3.0/mpindex/R/define-mpi-specs.R | 258 - mpindex-0.3.0/mpindex/R/save-mpi.R |only mpindex-0.3.0/mpindex/R/survey-helpers.R |only mpindex-0.3.0/mpindex/R/utils.R | 100 mpindex-0.3.0/mpindex/R/zzz.R |only mpindex-0.3.0/mpindex/README.md | 9 mpindex-0.3.0/mpindex/build/vignette.rds |binary mpindex-0.3.0/mpindex/inst/doc/migrating-to-0-3-0.R |only mpindex-0.3.0/mpindex/inst/doc/migrating-to-0-3-0.Rmd |only mpindex-0.3.0/mpindex/inst/doc/migrating-to-0-3-0.html |only mpindex-0.3.0/mpindex/inst/doc/mpindex.R | 643 +-- mpindex-0.3.0/mpindex/inst/doc/mpindex.Rmd | 793 +-- mpindex-0.3.0/mpindex/inst/doc/mpindex.html | 2057 ++++------ mpindex-0.3.0/mpindex/inst/doc/survey-weights.R |only mpindex-0.3.0/mpindex/inst/doc/survey-weights.Rmd |only mpindex-0.3.0/mpindex/inst/doc/survey-weights.html |only mpindex-0.3.0/mpindex/man/compute_mpi.Rd | 204 mpindex-0.3.0/mpindex/man/compute_mpi_from_profile.Rd |only mpindex-0.3.0/mpindex/man/define_deprivation.Rd | 60 mpindex-0.3.0/mpindex/man/define_mpi_specs.Rd | 57 mpindex-0.3.0/mpindex/man/deprived.Rd |only mpindex-0.3.0/mpindex/man/df_household.Rd | 2 mpindex-0.3.0/mpindex/man/df_household_roster.Rd | 2 mpindex-0.3.0/mpindex/man/global_mpi_specs.Rd |only mpindex-0.3.0/mpindex/man/save_mpi.Rd | 43 mpindex-0.3.0/mpindex/man/use_global_mpi_specs.Rd | 12 mpindex-0.3.0/mpindex/tests/deprivation-profile-simple.R | 12 mpindex-0.3.0/mpindex/tests/deprivation-profile.R | 68 mpindex-0.3.0/mpindex/tests/testthat/helper-deprivation-profile-simple.R |only mpindex-0.3.0/mpindex/tests/testthat/helper-deprivation-profile.R |only mpindex-0.3.0/mpindex/tests/testthat/helper-survey.R |only mpindex-0.3.0/mpindex/tests/testthat/test-arg-rename.R |only mpindex-0.3.0/mpindex/tests/testthat/test-by-and-extra-cols.R |only mpindex-0.3.0/mpindex/tests/testthat/test-compute-contribution.R | 32 mpindex-0.3.0/mpindex/tests/testthat/test-compute-headcount-ratio-adjusted.R | 23 mpindex-0.3.0/mpindex/tests/testthat/test-compute-headcount-ratio.R | 23 mpindex-0.3.0/mpindex/tests/testthat/test-compute-mpi-with.R |only mpindex-0.3.0/mpindex/tests/testthat/test-compute-mpi.R | 128 mpindex-0.3.0/mpindex/tests/testthat/test-create-deprivation-matrix.R | 39 mpindex-0.3.0/mpindex/tests/testthat/test-define-deprivation.R | 53 mpindex-0.3.0/mpindex/tests/testthat/test-define-mpi-specs.R | 84 mpindex-0.3.0/mpindex/tests/testthat/test-overall.R |only mpindex-0.3.0/mpindex/tests/testthat/test-save-mpi.R |only mpindex-0.3.0/mpindex/tests/testthat/test-survey.R |only mpindex-0.3.0/mpindex/vignettes/migrating-to-0-3-0.Rmd |only mpindex-0.3.0/mpindex/vignettes/mpindex.Rmd | 793 +-- mpindex-0.3.0/mpindex/vignettes/survey-weights.Rmd |only 66 files changed, 3124 insertions(+), 3385 deletions(-)
Title: OECD PISA Datasets from 2000-2022 in an Easy-to-Use Format
Description: The Programme for International Student Assessment (PISA) is a global study conducted by the Organization for Economic Cooperation and Development (OECD) in member and non-member countries to assess educational systems by assessing 15-year-old school students academic performance in mathematics, science, and reading. This datasets contains information on their scores and other socioeconomic characteristics, information about their school and its infrastructure, as well as the countries that are taking part in the program.
Author: Kevin Wang [aut, cre],
Paul Yacobellis [aut],
Erika Siregar [aut],
Sarah Romanes [aut],
Kim Fitter [aut],
Giulio Valentino Dalla Riva [aut],
Dianne Cook [aut],
Nick Tierney [aut],
Priya Dingorkar [aut],
Shabarish Sai Subramanian [aut],
Guan Ru Chen [ [...truncated...]
Maintainer: Kevin Wang <kevinwangstats@gmail.com>
Diff between learningtower versions 1.1.0 dated 2024-12-21 and 1.1.1 dated 2026-06-15
DESCRIPTION | 8 +- MD5 | 36 +++++------ NEWS.md | 4 + R/data.R | 2 R/load_student.R | 21 ++++++ README.md | 23 +++++-- build/vignette.rds |binary inst/doc/learningtower_school.R | 4 + inst/doc/learningtower_school.Rmd | 4 + inst/doc/learningtower_school.html | 11 +-- inst/doc/learningtower_student.R | 4 + inst/doc/learningtower_student.Rmd | 6 + inst/doc/learningtower_student.html | 99 ++++++++++++++++---------------- man/countrycode.Rd | 2 tests/testthat/test-merge.R | 3 tests/testthat/test-student-col-types.R | 1 tests/testthat/test-test-load.R | 13 +++- vignettes/learningtower_school.Rmd | 4 + vignettes/learningtower_student.Rmd | 6 + 19 files changed, 161 insertions(+), 90 deletions(-)
Title: Species Distribution Modeling with H3 Grids
Description: Provides tools for species distribution modeling using H3
hexagonal grids (Uber Technologies Inc., 2022, <https://h3geo.org>).
Facilitates retrieval of species occurrence records, generation of H3 grids,
computation of landscape metrics, and preparation of spatial data for modern
species distribution models workflows. Designed for biodiversity and landscape ecology research.
Author: Manuel Spinola [aut, cre]
Maintainer: Manuel Spinola <mspinola10@gmail.com>
Diff between h3sdm versions 0.1.5 dated 2026-06-12 and 0.1.6 dated 2026-06-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++++---- NAMESPACE | 2 ++ NEWS.md | 19 +++++++++++++++++++ R/h3sdm_filter_range.R |only R/h3sdm_pa.R | 4 ++++ R/h3sdm_pres_from_sf.R |only man/h3sdm_filter_range.Rd |only man/h3sdm_pres_from_sf.Rd |only 9 files changed, 37 insertions(+), 8 deletions(-)
Title: Procedures for Gaussian and Non Gaussian Geostatistical (Large)
Data Analysis
Description: Functions for Gaussian and Non Gaussian (bivariate) spatial and spatio-temporal data analysis are provided for a) (fast) simulation of random fields, b) inference for random fields using standard likelihood and a likelihood approximation method called weighted composite likelihood based on pairs and b) prediction using (local) best linear unbiased prediction. Weighted composite likelihood can be very efficient for estimating massive datasets. Both regression and spatial (temporal) dependence analysis can be jointly performed. Flexible covariance models for spatial and spatial-temporal data on Euclidean domains and spheres are provided. There are also many useful functions for plotting and performing diagnostic analysis. Different non Gaussian random fields can be considered in the analysis. Among them, random fields with marginal distributions such as Skew-Gaussian, Student-t, Tukey-h, Sin-Arcsin, Two-piece, Weibull, Gamma, Log-Gaussian, Binomial, Negative Binomial and Poisson. Se [...truncated...]
Author: Moreno Bevilacqua [aut, cre, cph],
Victor Morales-Onate [ctb],
Francisco Cuevas-Pacheco [ctb],
Christian Caamano-Carrillo [ctb]
Maintainer: Moreno Bevilacqua <moreno.bevilacqua89@gmail.com>
Diff between GeoModels versions 2.2.3 dated 2026-04-06 and 2.2.4 dated 2026-06-15
DESCRIPTION | 8 MD5 | 76 - R/GeoCompositeLik2.R | 592 ++++++----- R/GeoCovariogram.r | 25 R/GeoFit.r | 49 R/GeoFit2.R | 2 R/GeoKrig.r | 281 ++--- R/GeoKrigloc.R | 530 +++++---- R/GeoLik.r | 2389 ++++++++++++++++++++++----------------------- R/GeoNeighIndex.R | 1323 +++++++++++++++--------- R/GeoNeighbSelect.R | 4 R/GeoScores.R | 196 ++- R/GeoVarestbootstrap.R | 328 +++--- R/GeoWls.r | 2 R/Utility_cov.R | 43 build/partial.rdb |binary data/anomalies.rda |binary data/madagascartemp.rda |binary data/rainNLD.rda |binary data/spanish_wind.rda |binary data/winds.coords.rda |binary data/winds.rda |binary man/GeoCovariogram.Rd | 2 man/GeoFit.Rd | 9 man/GeoFit2.Rd | 7 man/GeoNeighIndex.Rd | 137 +- man/GeoNeighbSelect.Rd | 3 man/GeoScatterplot.Rd | 10 man/GeoScores.Rd | 324 ++++-- man/GeoVariogram.Rd | 9 man/GeoWls.Rd | 3 man/StartParam.Rd | 2 man/WlsStart.Rd | 2 src/CompositeLikelihood2.c | 196 ++- src/CorrelationFunction.c | 393 +++---- src/Distributions.c | 573 ++++++---- src/GeoModels_init.c | 24 src/TB.c | 22 src/header.h | 2 39 files changed, 4374 insertions(+), 3192 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-04-16 0.3.4
2024-10-30 0.3.3
2022-10-10 0.3.1
2022-10-05 0.3.0
2022-03-21 0.2.0
2021-11-12 0.1.3
2021-05-04 0.1.2
2021-01-29 0.1.1
2020-12-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-26 0.2.1
2021-05-04 0.2.0
2021-01-21 0.1.0
Title: Compositional Data Analysis
Description: Methods for analysis of compositional data including robust
methods (<doi:10.1007/978-3-319-96422-5>), imputation of missing values (<doi:10.1016/j.csda.2009.11.023>), methods to replace
rounded zeros (<doi:10.1080/02664763.2017.1410524>, <doi:10.1016/j.chemolab.2016.04.011>, <doi:10.1016/j.csda.2012.02.012>),
count zeros (<doi:10.1177/1471082X14535524>),
methods to deal with essential zeros (<doi:10.1080/02664763.2016.1182135>), (robust) outlier
detection for compositional data, (robust) principal component analysis for
compositional data, (robust) factor analysis for compositional data, (robust)
discriminant analysis for compositional data (Fisher rule), robust regression
with compositional predictors, functional data analysis (<doi:10.1016/j.csda.2015.07.007>) and p-splines (<doi:10.1016/j.csda.2015.07.007>),
contingency (<doi:10.1080/03610926.2013.824980>)
and compositional tables (<doi:10.1111/sjos.12326>, <doi: [...truncated...]
Author: Matthias Templ [aut, cre] ,
Karel Hron [aut] ,
Peter Filzmoser [aut] ,
Kamila Facevicova [ctb],
Petra Kynclova [ctb],
Jan Walach [ctb],
Veronika Pintar [ctb],
Jiajia Chen [ctb],
Dominika Miksova [ctb],
Bernhard Meindl [ctb],
Alessandra Menafoglio [ct [...truncated...]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between robCompositions versions 2.4.2 dated 2025-08-22 and 2.6.0 dated 2026-06-15
robCompositions-2.4.2/robCompositions/R/gm_backup.R |only robCompositions-2.4.2/robCompositions/R/impRZilr.R |only robCompositions-2.4.2/robCompositions/R/imputeBDLs.R |only robCompositions-2.4.2/robCompositions/man/impRZilr.Rd |only robCompositions-2.4.2/robCompositions/man/imputeBDLs.Rd |only robCompositions-2.4.2/robCompositions/tests/testthat/imp_test.R |only robCompositions-2.4.2/robCompositions/tests/testthat/importFood.R |only robCompositions-2.4.2/robCompositions/tests/testthat/rz.R |only robCompositions-2.4.2/robCompositions/tests/testthat/test_iris.r |only robCompositions-2.6.0/robCompositions/DESCRIPTION | 28 - robCompositions-2.6.0/robCompositions/MD5 | 196 +++++----- robCompositions-2.6.0/robCompositions/NAMESPACE | 22 - robCompositions-2.6.0/robCompositions/NEWS | 46 ++ robCompositions-2.6.0/robCompositions/R/cellNetCoDa.R |only robCompositions-2.6.0/robCompositions/R/cellPcaCoDa.R |only robCompositions-2.6.0/robCompositions/R/clustCoDa.R | 23 - robCompositions-2.6.0/robCompositions/R/contaminate_simplex.R |only robCompositions-2.6.0/robCompositions/R/daFisher.R | 2 robCompositions-2.6.0/robCompositions/R/dataSets.R | 15 robCompositions-2.6.0/robCompositions/R/impAll.R | 8 robCompositions-2.6.0/robCompositions/R/impRZalr.R | 2 robCompositions-2.6.0/robCompositions/R/imputeBDL-deprecated.R |only robCompositions-2.6.0/robCompositions/R/imputeBDL.R |only robCompositions-2.6.0/robCompositions/R/imputeUDLs.R | 5 robCompositions-2.6.0/robCompositions/R/plot.cellNetCoDa.R |only robCompositions-2.6.0/robCompositions/R/plot.cellPcaCoDa.R |only robCompositions-2.6.0/robCompositions/R/plot.imp.R | 9 robCompositions-2.6.0/robCompositions/R/plot.pcaCoDa.R | 6 robCompositions-2.6.0/robCompositions/R/pls_pb.R | 5 robCompositions-2.6.0/robCompositions/R/spca_logrs.R | 3 robCompositions-2.6.0/robCompositions/R/utils.R | 26 - robCompositions-2.6.0/robCompositions/build/partial.rdb |binary robCompositions-2.6.0/robCompositions/build/vignette.rds |binary robCompositions-2.6.0/robCompositions/data/GDPsatis.rda |binary robCompositions-2.6.0/robCompositions/data/ageCatWorld.rda |binary robCompositions-2.6.0/robCompositions/data/alcohol.rda |binary robCompositions-2.6.0/robCompositions/data/alcoholreg.rda |binary robCompositions-2.6.0/robCompositions/data/arcticLake.rda |binary robCompositions-2.6.0/robCompositions/data/cancer.rda |binary robCompositions-2.6.0/robCompositions/data/cancerMN.rda |binary robCompositions-2.6.0/robCompositions/data/chorizonDL.rda |binary robCompositions-2.6.0/robCompositions/data/coffee.rda |binary robCompositions-2.6.0/robCompositions/data/economy.rda |binary robCompositions-2.6.0/robCompositions/data/educFM.rda |binary robCompositions-2.6.0/robCompositions/data/efsa.rda |binary robCompositions-2.6.0/robCompositions/data/election.rda |binary robCompositions-2.6.0/robCompositions/data/electionATbp.rda |binary robCompositions-2.6.0/robCompositions/data/employment.rda |binary robCompositions-2.6.0/robCompositions/data/employment2.rda |binary robCompositions-2.6.0/robCompositions/data/employment_df.rda |binary robCompositions-2.6.0/robCompositions/data/expenditures.rda |binary robCompositions-2.6.0/robCompositions/data/expendituresEU.rda |binary robCompositions-2.6.0/robCompositions/data/foodbalance.rda |binary robCompositions-2.6.0/robCompositions/data/gemas.rda |binary robCompositions-2.6.0/robCompositions/data/gjovik.rda |binary robCompositions-2.6.0/robCompositions/data/govexp.rda |binary robCompositions-2.6.0/robCompositions/data/haplogroups.rda |binary robCompositions-2.6.0/robCompositions/data/honey.rda |binary robCompositions-2.6.0/robCompositions/data/instw.rda |binary robCompositions-2.6.0/robCompositions/data/isic32.rda |binary robCompositions-2.6.0/robCompositions/data/laborForce.rda |binary robCompositions-2.6.0/robCompositions/data/landcover.rda |binary robCompositions-2.6.0/robCompositions/data/lifeExpGdp.rda |binary robCompositions-2.6.0/robCompositions/data/machineOperators.rda |binary robCompositions-2.6.0/robCompositions/data/manu_abs.rda |binary robCompositions-2.6.0/robCompositions/data/mcad.rda |binary robCompositions-2.6.0/robCompositions/data/mortality.rda |binary robCompositions-2.6.0/robCompositions/data/mortality_tab.rda |binary robCompositions-2.6.0/robCompositions/data/nutrients.rda |binary robCompositions-2.6.0/robCompositions/data/nutrients_branded.rda |binary robCompositions-2.6.0/robCompositions/data/payments.rda |binary robCompositions-2.6.0/robCompositions/data/phd.rda |binary robCompositions-2.6.0/robCompositions/data/phd_totals.rda |binary robCompositions-2.6.0/robCompositions/data/precipitation.rda |binary robCompositions-2.6.0/robCompositions/data/production.rda |binary robCompositions-2.6.0/robCompositions/data/rcodes.rda |binary robCompositions-2.6.0/robCompositions/data/saffron.rda |binary robCompositions-2.6.0/robCompositions/data/skyeLavas.rda |binary robCompositions-2.6.0/robCompositions/data/socExp.rda |binary robCompositions-2.6.0/robCompositions/data/teachingStuff.rda |binary robCompositions-2.6.0/robCompositions/data/trondelagC.rda |binary robCompositions-2.6.0/robCompositions/data/trondelagO.rda |binary robCompositions-2.6.0/robCompositions/data/unemployed.rda |binary robCompositions-2.6.0/robCompositions/inst/doc/imputation.Rnw | 6 robCompositions-2.6.0/robCompositions/inst/doc/imputation.pdf |binary robCompositions-2.6.0/robCompositions/inst/doc/robCompositions-overview.Rnw | 8 robCompositions-2.6.0/robCompositions/inst/doc/robCompositions-overview.pdf |binary robCompositions-2.6.0/robCompositions/man/bootnComp.Rd | 2 robCompositions-2.6.0/robCompositions/man/cellNetCoDa.Rd |only robCompositions-2.6.0/robCompositions/man/cellPcaCoDa.Rd |only robCompositions-2.6.0/robCompositions/man/contaminate_simplex.Rd |only robCompositions-2.6.0/robCompositions/man/govexp.Rd | 5 robCompositions-2.6.0/robCompositions/man/impAll.Rd | 4 robCompositions-2.6.0/robCompositions/man/impRZalr.Rd | 2 robCompositions-2.6.0/robCompositions/man/imputeBDL.Rd |only robCompositions-2.6.0/robCompositions/man/plot.cellNetCoDa.Rd |only robCompositions-2.6.0/robCompositions/man/plot.cellPcaCoDa.Rd |only robCompositions-2.6.0/robCompositions/man/print.cellNetCoDa.Rd |only robCompositions-2.6.0/robCompositions/man/print.cellPcaCoDa.Rd |only robCompositions-2.6.0/robCompositions/man/robCompositions-package.Rd | 7 robCompositions-2.6.0/robCompositions/man/spca_logrs.Rd | 3 robCompositions-2.6.0/robCompositions/man/summary.cellNetCoDa.Rd |only robCompositions-2.6.0/robCompositions/man/summary.cellPcaCoDa.Rd |only robCompositions-2.6.0/robCompositions/man/teachingStuff.Rd | 5 robCompositions-2.6.0/robCompositions/man/unemployed.Rd | 5 robCompositions-2.6.0/robCompositions/src/sandia_rules.h | 2 robCompositions-2.6.0/robCompositions/tests/testthat/test_cellNetCoDa.R |only robCompositions-2.6.0/robCompositions/tests/testthat/test_cellPcaCoDa.R |only robCompositions-2.6.0/robCompositions/tests/testthat/test_imputation.R |only robCompositions-2.6.0/robCompositions/tests/testthat/test_propagation.R |only robCompositions-2.6.0/robCompositions/vignettes/imputation.Rnw | 6 robCompositions-2.6.0/robCompositions/vignettes/refPCS.bib | 6 robCompositions-2.6.0/robCompositions/vignettes/refPCSn.bib | 5 robCompositions-2.6.0/robCompositions/vignettes/robCompositions-overview.Rnw | 8 114 files changed, 258 insertions(+), 212 deletions(-)
More information about robCompositions at CRAN
Permanent link
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, ANOVA, TTEST, FREQ, and UNIVARIATE. Some R packages provide Type II and Type III SS. However, the results of nested and complex designs are often different from those of 'SAS'. Different results do not necessarily mean incorrectness. However, many want the same results as 'SAS'. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut, cre]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.10.8 dated 2026-03-08 and 1.0.0 dated 2026-06-15
sasLM-0.10.8/sasLM/inst/doc/Report-Different-Simplest2603082306.pdf |only sasLM-0.10.8/sasLM/inst/doc/Report-NOT-OKs2603082307.pdf |only sasLM-0.10.8/sasLM/inst/doc/Validation-Report-GLM-2603082308.pdf |only sasLM-1.0.0/sasLM/DESCRIPTION | 10 sasLM-1.0.0/sasLM/MD5 | 240 +++++----- sasLM-1.0.0/sasLM/R/BasicUtil.R | 34 - sasLM-1.0.0/sasLM/R/Diffogram.R | 11 sasLM-1.0.0/sasLM/R/EMS.R | 3 sasLM-1.0.0/sasLM/R/GLM.R | 26 - sasLM-1.0.0/sasLM/R/LSM.R | 6 sasLM-1.0.0/sasLM/R/ORinv.R | 6 sasLM-1.0.0/sasLM/R/ORmn.R | 151 +++--- sasLM-1.0.0/sasLM/R/PDIFF.R | 9 sasLM-1.0.0/sasLM/R/RDmn.R | 14 sasLM-1.0.0/sasLM/R/REG.R | 28 - sasLM-1.0.0/sasLM/R/RRmn.R | 7 sasLM-1.0.0/sasLM/R/RanTest.R | 5 sasLM-1.0.0/sasLM/R/T3MS.R | 3 sasLM-1.0.0/sasLM/R/T3test.R | 4 sasLM-1.0.0/sasLM/R/UNIV.R | 6 sasLM-1.0.0/sasLM/R/e2.R | 16 sasLM-1.0.0/sasLM/R/e3.R | 17 sasLM-1.0.0/sasLM/R/lr0.R | 2 sasLM-1.0.0/sasLM/inst/NEWS.Rd | 19 sasLM-1.0.0/sasLM/inst/doc/Report-Different-Simplest2606121557.pdf |only sasLM-1.0.0/sasLM/inst/doc/Report-NOT-OKs2606121557.pdf |only sasLM-1.0.0/sasLM/inst/doc/Validation-Report-GLM-2606121701.pdf |only sasLM-1.0.0/sasLM/inst/doc/bioequivalence-with-sasLM.R |only sasLM-1.0.0/sasLM/inst/doc/bioequivalence-with-sasLM.Rmd |only sasLM-1.0.0/sasLM/inst/doc/bioequivalence-with-sasLM.html |only sasLM-1.0.0/sasLM/inst/doc/index.html |only sasLM-1.0.0/sasLM/inst/doc/sasLM-for-SAS-users.R |only sasLM-1.0.0/sasLM/inst/doc/sasLM-for-SAS-users.Rmd |only sasLM-1.0.0/sasLM/inst/doc/sasLM-for-SAS-users.html |only sasLM-1.0.0/sasLM/inst/doc/stratified-2x2-tables.R |only sasLM-1.0.0/sasLM/inst/doc/stratified-2x2-tables.Rmd |only sasLM-1.0.0/sasLM/inst/doc/stratified-2x2-tables.html |only sasLM-1.0.0/sasLM/man/BEdata.Rd | 6 sasLM-1.0.0/sasLM/man/BY.Rd | 8 sasLM-1.0.0/sasLM/man/CIest.Rd | 14 sasLM-1.0.0/sasLM/man/CONTR.Rd | 12 sasLM-1.0.0/sasLM/man/Coll.Rd | 6 sasLM-1.0.0/sasLM/man/Cor.test.Rd | 14 sasLM-1.0.0/sasLM/man/CumAlpha.Rd | 14 sasLM-1.0.0/sasLM/man/Diffogram.Rd | 6 sasLM-1.0.0/sasLM/man/DoEdata.Rd | 2 sasLM-1.0.0/sasLM/man/Drift.Rd | 6 sasLM-1.0.0/sasLM/man/EMS.Rd | 4 sasLM-1.0.0/sasLM/man/ESTM.Rd | 14 sasLM-1.0.0/sasLM/man/ExitP.Rd | 8 sasLM-1.0.0/sasLM/man/G2SWEEP.Rd | 14 sasLM-1.0.0/sasLM/man/GLM.Rd | 25 - sasLM-1.0.0/sasLM/man/LCL.Rd | 4 sasLM-1.0.0/sasLM/man/LSM.Rd | 28 - sasLM-1.0.0/sasLM/man/Max.Rd | 4 sasLM-1.0.0/sasLM/man/Mean.Rd | 4 sasLM-1.0.0/sasLM/man/Median.Rd | 4 sasLM-1.0.0/sasLM/man/Min.Rd | 4 sasLM-1.0.0/sasLM/man/ModelMatrix.Rd | 8 sasLM-1.0.0/sasLM/man/N.Rd | 6 sasLM-1.0.0/sasLM/man/OBFBound.Rd | 16 sasLM-1.0.0/sasLM/man/OR.Rd | 16 sasLM-1.0.0/sasLM/man/ORcmh.Rd | 17 sasLM-1.0.0/sasLM/man/ORinv.Rd | 17 sasLM-1.0.0/sasLM/man/ORmn.Rd | 14 sasLM-1.0.0/sasLM/man/ORmn1.Rd | 12 sasLM-1.0.0/sasLM/man/PDIFF.Rd | 16 sasLM-1.0.0/sasLM/man/Pcor.test.Rd | 10 sasLM-1.0.0/sasLM/man/PocockBound.Rd | 12 sasLM-1.0.0/sasLM/man/QuartileRange.Rd | 8 sasLM-1.0.0/sasLM/man/RD.Rd | 10 sasLM-1.0.0/sasLM/man/RDinv.Rd | 17 sasLM-1.0.0/sasLM/man/RDmn.Rd | 10 sasLM-1.0.0/sasLM/man/RDmn1.Rd | 12 sasLM-1.0.0/sasLM/man/REG.Rd | 32 - sasLM-1.0.0/sasLM/man/RR.Rd | 10 sasLM-1.0.0/sasLM/man/RRinv.Rd | 17 sasLM-1.0.0/sasLM/man/RRmn.Rd | 10 sasLM-1.0.0/sasLM/man/RRmn1.Rd | 12 sasLM-1.0.0/sasLM/man/RanTest.Rd | 14 sasLM-1.0.0/sasLM/man/Range.Rd | 2 sasLM-1.0.0/sasLM/man/SLICE.Rd | 16 sasLM-1.0.0/sasLM/man/SS.Rd | 6 sasLM-1.0.0/sasLM/man/ScoreCI.Rd | 12 sasLM-1.0.0/sasLM/man/SkewnessSE.Rd | 2 sasLM-1.0.0/sasLM/man/T3MS.Rd | 6 sasLM-1.0.0/sasLM/man/T3test.Rd | 8 sasLM-1.0.0/sasLM/man/TTEST.Rd | 4 sasLM-1.0.0/sasLM/man/UCL.Rd | 4 sasLM-1.0.0/sasLM/man/UNIV.Rd | 23 sasLM-1.0.0/sasLM/man/WhiteTest.Rd | 6 sasLM-1.0.0/sasLM/man/af.Rd | 2 sasLM-1.0.0/sasLM/man/aov1.Rd | 18 sasLM-1.0.0/sasLM/man/aov2.Rd | 18 sasLM-1.0.0/sasLM/man/aov3.Rd | 18 sasLM-1.0.0/sasLM/man/aspirinCHD.Rd | 8 sasLM-1.0.0/sasLM/man/bk.Rd | 6 sasLM-1.0.0/sasLM/man/cSS.Rd | 16 sasLM-1.0.0/sasLM/man/corFisher.Rd | 6 sasLM-1.0.0/sasLM/man/e1.Rd | 10 sasLM-1.0.0/sasLM/man/e2.Rd | 10 sasLM-1.0.0/sasLM/man/e3.Rd | 10 sasLM-1.0.0/sasLM/man/est.Rd | 22 sasLM-1.0.0/sasLM/man/estmb.Rd | 8 sasLM-1.0.0/sasLM/man/g2inv.Rd | 6 sasLM-1.0.0/sasLM/man/geoCV.Rd | 2 sasLM-1.0.0/sasLM/man/geoMean.Rd | 2 sasLM-1.0.0/sasLM/man/is.cor.Rd | 6 sasLM-1.0.0/sasLM/man/lfit.Rd | 16 sasLM-1.0.0/sasLM/man/lr.Rd | 10 sasLM-1.0.0/sasLM/man/lr0.Rd | 8 sasLM-1.0.0/sasLM/man/mtest.Rd | 4 sasLM-1.0.0/sasLM/man/pB.Rd | 10 sasLM-1.0.0/sasLM/man/pD.Rd | 6 sasLM-1.0.0/sasLM/man/pResD.Rd | 6 sasLM-1.0.0/sasLM/man/regD.Rd | 8 sasLM-1.0.0/sasLM/man/sasLM-package.Rd | 4 sasLM-1.0.0/sasLM/man/satt.Rd | 10 sasLM-1.0.0/sasLM/man/seqBound.Rd | 18 sasLM-1.0.0/sasLM/man/seqCI.Rd | 10 sasLM-1.0.0/sasLM/man/tmtest.Rd | 8 sasLM-1.0.0/sasLM/man/trimmedMean.Rd | 4 sasLM-1.0.0/sasLM/man/tsum.Rd | 10 sasLM-1.0.0/sasLM/man/tsum0.Rd | 10 sasLM-1.0.0/sasLM/man/tsum1.Rd | 16 sasLM-1.0.0/sasLM/man/tsum2.Rd | 20 sasLM-1.0.0/sasLM/man/tsum3.Rd | 22 sasLM-1.0.0/sasLM/man/vtest.Rd | 8 sasLM-1.0.0/sasLM/man/ztest.Rd | 8 129 files changed, 811 insertions(+), 776 deletions(-)
Title: Visualization of 'exametrika' Output Using 'ggplot2'
Description: Provides 'ggplot2'-based visualization functions for output objects
from the 'exametrika' package, which implements test data engineering methods
described in Shojima (2022, ISBN:978-981-16-9547-1). Supports a wide range of
psychometric models including Item Response Theory, Latent Class Analysis,
Latent Rank Analysis, Biclustering (binary, ordinal, and nominal),
Bayesian Network Models, and related network models. All plot functions
return 'ggplot2' objects that can be further customized by the user.
Author: Koji Kosugi [aut, cre] ,
Daichi Kamimura [aut]
Maintainer: Koji Kosugi <kosugitti@gmail.com>
Diff between ggExametrika versions 1.1.0 dated 2026-04-17 and 1.1.1 dated 2026-06-15
DESCRIPTION | 8 +- MD5 | 34 +++++------ NAMESPACE | 1 NEWS.md | 39 +++++++++++++ R/Biclustering.R | 10 +-- R/GRM.R | 3 - R/IRPtoCMPRMP.R | 3 - R/LRAordinal.R | 9 +-- R/PolyBiclustering.R | 4 - R/ScoreRank.R | 3 - R/arraytoLDPSR.R | 90 +++++++++++++++++++++---------- R/plotDistractor_gg.R | 3 - R/plotFCBR_gg.R | 3 - R/plotLDPSR_gg.R | 4 - man/plotArray_gg.Rd | 29 ++++++--- tests/testthat/Rplots.pdf |binary tests/testthat/test-Biclustering-plots.R | 55 ++++++++++++++++++ tests/testthat/test-plotArray_gg.R | 8 +- 18 files changed, 217 insertions(+), 89 deletions(-)
Title: Representation of DET Curve with Confidence Intervals
Description: Builds both ROC (Receiver Operating Characteristic) and DET (Detection Error Tradeoff) curves from a set of predictors that are the
results of a binary classification system. The curves give a general view of classifier performance
and are useful for comparing different systems.
Author: Garcia-Rodenas, Alvaro [aut],
Franco, Manuel [aut],
Vivo, Juana-Maria [aut],
Fernandez-Breis, Jesualdo T. [aut],
Font, Roberto [aut],
Curran, James [cre]
Maintainer: "Curran, James" <j.curran@auckland.ac.nz>
Diff between DET versions 3.0.2 dated 2025-08-28 and 3.0.3 dated 2026-06-15
DET-3.0.2/DET/data/ovarianCancer.RData |only DET-3.0.2/DET/data/speaker.RData |only DET-3.0.3/DET/DESCRIPTION | 16 DET-3.0.3/DET/MD5 | 55 - DET-3.0.3/DET/NAMESPACE | 3 DET-3.0.3/DET/NEWS.md | 44 - DET-3.0.3/DET/R/detc.R | 424 +++++----- DET-3.0.3/DET/R/internalFunctions.R | 299 +++---- DET-3.0.3/DET/R/measures.R | 105 +- DET-3.0.3/DET/R/ovarianCancer-data.R | 4 DET-3.0.3/DET/R/plot.R | 1061 ++++++++++++++------------- DET-3.0.3/DET/R/show.R | 72 + DET-3.0.3/DET/R/speaker-data.R | 12 DET-3.0.3/DET/README.md | 113 ++ DET-3.0.3/DET/build/partial.rdb |binary DET-3.0.3/DET/man/EER.Rd | 6 DET-3.0.3/DET/man/detc.Rd | 35 DET-3.0.3/DET/man/detc.ci.Rd | 21 DET-3.0.3/DET/man/minDcf.Rd | 14 DET-3.0.3/DET/man/ovarianCancer.Rd | 4 DET-3.0.3/DET/man/plot.DET.Rd | 2 DET-3.0.3/DET/man/plot.DETs.Rd | 18 DET-3.0.3/DET/man/plotROC.Rd | 4 DET-3.0.3/DET/man/plotROCs.Rd | 18 DET-3.0.3/DET/man/pointsEER.Rd | 4 DET-3.0.3/DET/man/show-DETs-method.Rd |only DET-3.0.3/DET/man/speaker.Rd | 10 DET-3.0.3/DET/tests/testthat.R |only DET-3.0.3/DET/tests/testthat/test-detc.R | 16 DET-3.0.3/DET/tests/testthat/test-measures.R |only DET-3.0.3/DET/tests/testthat/test-plots.R |only DET-3.0.3/DET/tests/testthat/test-show.R |only 32 files changed, 1282 insertions(+), 1078 deletions(-)
Title: Making "Deduplicated" Functions
Description: Contains one main function deduped() which speeds up slow,
vectorized functions by only performing computations on the unique values
of the input and expanding the results at the end.
Author: Or Gadish [aut, cre, cph]
Maintainer: Or Gadish <orgadish@gmail.com>
Diff between deduped versions 0.4.0 dated 2026-04-02 and 0.5.0 dated 2026-06-15
deduped-0.4.0/deduped/R/deduped_map.R |only deduped-0.4.0/deduped/man/deduped_map.Rd |only deduped-0.4.0/deduped/tests/testthat/test-deduped_map.R |only deduped-0.5.0/deduped/DESCRIPTION | 10 - deduped-0.5.0/deduped/MD5 | 26 +- deduped-0.5.0/deduped/NAMESPACE | 1 deduped-0.5.0/deduped/NEWS.md | 23 ++ deduped-0.5.0/deduped/R/deduped.R | 99 +++++++++-- deduped-0.5.0/deduped/R/with_deduped.R | 59 ++++-- deduped-0.5.0/deduped/R/zzz.R |only deduped-0.5.0/deduped/README.md | 58 +++++- deduped-0.5.0/deduped/inst/WORDLIST | 3 deduped-0.5.0/deduped/man/deduped.Rd | 16 + deduped-0.5.0/deduped/man/with_deduped.Rd | 134 ++++++++------- deduped-0.5.0/deduped/tests/testthat/test-deduped.R | 134 ++++++++++++--- deduped-0.5.0/deduped/tests/testthat/test-with_deduped.R | 46 ++++- 16 files changed, 469 insertions(+), 140 deletions(-)