Title: Flexible, Interactive 'shiny' Modules for Almost Any Plot
Description: Offers a core selection of interactivity-first 'shiny' modules for many
plot types meant to serve as flexible building blocks for applications and
as the base for more complex modules. These modules
allow for the rapid and convenient construction of 'shiny' apps with very few lines
of code and decouple plotting from the underlying data. These modules allow
for full plot aesthetic customization by the end user through UI inputs. Utility
functions for simple UI organization, automated UI tooltips, and additional
plot enhancements are also provided. Includes a multi-panel figure builder app
for arranging multiple modules together in a free-form layout.
Author: Jared Andrews [aut, cre] ,
Jacob Martin [aut]
Maintainer: Jared Andrews <jared.andrews07@gmail.com>
Diff between VizModules versions 0.1.1 dated 2026-04-08 and 0.2.0 dated 2026-06-16
VizModules-0.1.1/VizModules/R/plot_mods.R |only VizModules-0.1.1/VizModules/R/sysdata.rda |only VizModules-0.1.1/VizModules/man/INTERNAL_apply_stat_annotations.Rd |only VizModules-0.1.1/VizModules/man/INTERNAL_compute_pairwise_stats.Rd |only VizModules-0.1.1/VizModules/man/INTERNAL_create_download_handler.Rd |only VizModules-0.1.1/VizModules/man/INTERNAL_create_stat_annotations.Rd |only VizModules-0.1.1/VizModules/man/INTERNAL_empty_plot.Rd |only VizModules-0.1.1/VizModules/man/INTERNAL_generate_pair_strings.Rd |only VizModules-0.1.1/VizModules/man/INTERNAL_parse_pair_strings.Rd |only VizModules-0.1.1/VizModules/man/INTERNAL_write_stats_csv.Rd |only VizModules-0.2.0/VizModules/DESCRIPTION | 17 VizModules-0.2.0/VizModules/MD5 | 316 +- VizModules-0.2.0/VizModules/NAMESPACE | 21 VizModules-0.2.0/VizModules/NEWS.md | 41 VizModules-0.2.0/VizModules/R/createModuleApp.R | 13 VizModules-0.2.0/VizModules/R/data.R | 61 VizModules-0.2.0/VizModules/R/dittoViz_ScatterPlot_module_server.R | 145 VizModules-0.2.0/VizModules/R/dittoViz_ScatterPlot_module_ui.R | 130 VizModules-0.2.0/VizModules/R/dittoViz_yPlot_module_app.R | 3 VizModules-0.2.0/VizModules/R/dittoViz_yPlot_module_server.R | 144 VizModules-0.2.0/VizModules/R/dittoViz_yPlot_module_ui.R | 111 VizModules-0.2.0/VizModules/R/dumbbellPlot.R | 20 VizModules-0.2.0/VizModules/R/dumbbellPlot_module_server.R | 48 VizModules-0.2.0/VizModules/R/dumbbellPlot_module_ui.R | 46 VizModules-0.2.0/VizModules/R/globals.R |only VizModules-0.2.0/VizModules/R/linePlot.R | 101 VizModules-0.2.0/VizModules/R/linePlot_module_server.R | 75 VizModules-0.2.0/VizModules/R/linePlot_module_ui.R | 59 VizModules-0.2.0/VizModules/R/parallelCoordinatesPlot.R | 112 VizModules-0.2.0/VizModules/R/parallelCoordinatesPlot_module_server.R | 111 VizModules-0.2.0/VizModules/R/parallelCoordinatesPlot_module_ui.R | 50 VizModules-0.2.0/VizModules/R/parse_utils.R | 9 VizModules-0.2.0/VizModules/R/piePlot_module_server.R | 36 VizModules-0.2.0/VizModules/R/piePlot_module_ui.R | 61 VizModules-0.2.0/VizModules/R/plot_axis.R |only VizModules-0.2.0/VizModules/R/plot_boxplot.R |only VizModules-0.2.0/VizModules/R/plot_facets.R |only VizModules-0.2.0/VizModules/R/plot_fit_lines.R |only VizModules-0.2.0/VizModules/R/plot_helpers.R |only VizModules-0.2.0/VizModules/R/plot_legend.R |only VizModules-0.2.0/VizModules/R/plot_reference_lines.R |only VizModules-0.2.0/VizModules/R/plot_source_data.R |only VizModules-0.2.0/VizModules/R/plotthis_AreaPlot_module_server.R | 67 VizModules-0.2.0/VizModules/R/plotthis_AreaPlot_module_ui.R | 47 VizModules-0.2.0/VizModules/R/plotthis_BarPlot_module_server.R | 78 VizModules-0.2.0/VizModules/R/plotthis_BarPlot_module_ui.R | 44 VizModules-0.2.0/VizModules/R/plotthis_BoxPlot_module_server.R | 106 VizModules-0.2.0/VizModules/R/plotthis_BoxPlot_module_ui.R | 86 VizModules-0.2.0/VizModules/R/plotthis_DensityPlot_module_server.R | 68 VizModules-0.2.0/VizModules/R/plotthis_DensityPlot_module_ui.R | 40 VizModules-0.2.0/VizModules/R/plotthis_DotPlot_module_app.R |only VizModules-0.2.0/VizModules/R/plotthis_DotPlot_module_server.R |only VizModules-0.2.0/VizModules/R/plotthis_DotPlot_module_ui.R |only VizModules-0.2.0/VizModules/R/plotthis_Histogram_module_server.R | 70 VizModules-0.2.0/VizModules/R/plotthis_Histogram_module_ui.R | 40 VizModules-0.2.0/VizModules/R/plotthis_SplitBarPlot_module_server.R | 74 VizModules-0.2.0/VizModules/R/plotthis_SplitBarPlot_module_ui.R | 240 - VizModules-0.2.0/VizModules/R/plotthis_ViolinPlot_module_server.R | 114 VizModules-0.2.0/VizModules/R/plotthis_ViolinPlot_module_ui.R | 80 VizModules-0.2.0/VizModules/R/radarPlot_module_server.R | 36 VizModules-0.2.0/VizModules/R/radarPlot_module_ui.R | 69 VizModules-0.2.0/VizModules/R/reset_uniform_ui_inputs.R | 35 VizModules-0.2.0/VizModules/R/stat_helper.R | 997 +++--- VizModules-0.2.0/VizModules/R/ternaryPlot_module_server.R | 36 VizModules-0.2.0/VizModules/R/ternaryPlot_module_ui.R | 47 VizModules-0.2.0/VizModules/R/ui_utils.R | 277 + VizModules-0.2.0/VizModules/R/uniform_ui_inputs.R | 139 VizModules-0.2.0/VizModules/README.md | 77 VizModules-0.2.0/VizModules/build/vignette.rds |binary VizModules-0.2.0/VizModules/data/example_markers.rda |only VizModules-0.2.0/VizModules/data/example_mtcars.rda |binary VizModules-0.2.0/VizModules/data/example_rnaseq.rda |only VizModules-0.2.0/VizModules/inst/apps/figure-builder |only VizModules-0.2.0/VizModules/inst/apps/module-gallery/app.R | 48 VizModules-0.2.0/VizModules/inst/apps/rnaseq-showcase |only VizModules-0.2.0/VizModules/inst/apps/test_dotPlot |only VizModules-0.2.0/VizModules/inst/doc/adding-a-new-module.Rmd | 18 VizModules-0.2.0/VizModules/inst/doc/adding-a-new-module.html | 34 VizModules-0.2.0/VizModules/inst/doc/quick-start.R | 50 VizModules-0.2.0/VizModules/inst/doc/quick-start.Rmd | 64 VizModules-0.2.0/VizModules/inst/doc/quick-start.html | 62 VizModules-0.2.0/VizModules/man/INTERNAL_add_ablines.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_add_fit_lines_to_subplots.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_add_hlines.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_add_multi_axis_traces.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_add_plot_config.Rd | 9 VizModules-0.2.0/VizModules/man/INTERNAL_add_reference_lines.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_add_vlines.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_adjusted_axis_label.Rd |only VizModules-0.2.0/VizModules/man/INTERNAL_apply_axis_title_to_annotations.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_apply_facet_subplot_spacing.Rd |only VizModules-0.2.0/VizModules/man/INTERNAL_apply_legend_styling.Rd |only VizModules-0.2.0/VizModules/man/INTERNAL_apply_plotly_newshape.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_apply_render_margins.Rd |only VizModules-0.2.0/VizModules/man/INTERNAL_apply_subplot_axis_styling.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_apply_title_layout.Rd |only VizModules-0.2.0/VizModules/man/INTERNAL_axis_titles_as_annotations.Rd |only VizModules-0.2.0/VizModules/man/INTERNAL_build_facet_annotations.Rd | 24 VizModules-0.2.0/VizModules/man/INTERNAL_build_facet_panel_borders.Rd |only VizModules-0.2.0/VizModules/man/INTERNAL_calculate_range.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_clean_facet_dim.Rd |only VizModules-0.2.0/VizModules/man/INTERNAL_compute_linear_fit.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_compute_loess_fit.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_create_axis_styles.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_create_ggplot_axis_style.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_custom_legend.Rd |only VizModules-0.2.0/VizModules/man/INTERNAL_extract_marker_sizes.Rd |only VizModules-0.2.0/VizModules/man/INTERNAL_fix_boxplot_facet_positions.Rd | 2 VizModules-0.2.0/VizModules/man/INTERNAL_hide_jitter_from_legend.Rd | 2 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VizModules-0.2.0/VizModules/man/createModuleApp.Rd | 10 VizModules-0.2.0/VizModules/man/create_source_download_handler.Rd |only VizModules-0.2.0/VizModules/man/create_stat_annotations.Rd |only VizModules-0.2.0/VizModules/man/dittoViz_scatterPlotInputsUI.Rd | 33 VizModules-0.2.0/VizModules/man/dittoViz_scatterPlotOutputUI.Rd | 7 VizModules-0.2.0/VizModules/man/dittoViz_yPlotInputsUI.Rd | 27 VizModules-0.2.0/VizModules/man/dittoViz_yPlotOutputUI.Rd | 45 VizModules-0.2.0/VizModules/man/dumbbellPlot.Rd | 7 VizModules-0.2.0/VizModules/man/dumbbellPlotInputsUI.Rd | 17 VizModules-0.2.0/VizModules/man/dumbbellPlotOutputUI.Rd | 7 VizModules-0.2.0/VizModules/man/empty_plot.Rd |only VizModules-0.2.0/VizModules/man/example_markers.Rd |only VizModules-0.2.0/VizModules/man/example_rnaseq.Rd |only VizModules-0.2.0/VizModules/man/figures/DotPlot.png |only VizModules-0.2.0/VizModules/man/generate_pair_strings.Rd |only VizModules-0.2.0/VizModules/man/is_pure_type.Rd | 2 VizModules-0.2.0/VizModules/man/linePlot.Rd | 22 VizModules-0.2.0/VizModules/man/linePlotInputsUI.Rd | 5 VizModules-0.2.0/VizModules/man/linePlotOutputUI.Rd | 45 VizModules-0.2.0/VizModules/man/module_tack_ui.Rd | 9 VizModules-0.2.0/VizModules/man/organize_inputs.Rd | 22 VizModules-0.2.0/VizModules/man/parallelCoordinatesPlot.Rd | 19 VizModules-0.2.0/VizModules/man/parallelCoordinatesPlotInputsUI.Rd | 11 VizModules-0.2.0/VizModules/man/parallelCoordinatesPlotOutputUI.Rd | 7 VizModules-0.2.0/VizModules/man/parse_pair_strings.Rd |only VizModules-0.2.0/VizModules/man/piePlotInputsUI.Rd | 175 - VizModules-0.2.0/VizModules/man/piePlotOutputUI.Rd | 45 VizModules-0.2.0/VizModules/man/plotthis_AreaPlotInputsUI.Rd | 15 VizModules-0.2.0/VizModules/man/plotthis_AreaPlotOutputUI.Rd | 45 VizModules-0.2.0/VizModules/man/plotthis_BarPlotApp.Rd | 2 VizModules-0.2.0/VizModules/man/plotthis_BarPlotInputsUI.Rd | 14 VizModules-0.2.0/VizModules/man/plotthis_BarPlotOutputUI.Rd | 45 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VizModules-0.2.0/VizModules/man/plotthis_ViolinPlotApp.Rd | 2 VizModules-0.2.0/VizModules/man/plotthis_ViolinPlotInputsUI.Rd | 60 VizModules-0.2.0/VizModules/man/plotthis_ViolinPlotOutputUI.Rd | 45 VizModules-0.2.0/VizModules/man/radarPlotInputsUI.Rd | 11 VizModules-0.2.0/VizModules/man/radarPlotOutputUI.Rd | 7 VizModules-0.2.0/VizModules/man/ternaryPlotInputsUI.Rd | 1 VizModules-0.2.0/VizModules/man/ternaryPlotOutputUI.Rd | 7 VizModules-0.2.0/VizModules/tests/testthat/test-dumbbellPlot.R | 17 VizModules-0.2.0/VizModules/tests/testthat/test-linePlot.R | 532 ++- VizModules-0.2.0/VizModules/tests/testthat/test-multiColorPicker.R | 114 VizModules-0.2.0/VizModules/tests/testthat/test-parallelCoordinatesPlot.R | 53 VizModules-0.2.0/VizModules/tests/testthat/test-piePlot.R | 196 - VizModules-0.2.0/VizModules/tests/testthat/test-plot_mods.R | 1456 ++++++---- VizModules-0.2.0/VizModules/tests/testthat/test-scatterPlot.R |only VizModules-0.2.0/VizModules/tests/testthat/test-stat_helper.R | 178 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Title: Estimate and Forecast Real-Time Infection Dynamics
Description: Estimates the time-varying reproduction number, rate of
spread, and doubling time using a renewal equation approach combined
with Bayesian inference via Stan. Supports Gaussian process and
random walk priors for modelling changes in
transmission over time. Accounts for delays between infection and
observation (incubation period, reporting delays), right-truncation
in recent data, day-of-week effects, and observation overdispersion.
Can estimate relationships between primary and secondary outcomes
(e.g., cases to hospitalisations or deaths) and forecast both. Runs
across multiple regions in parallel. Based on
Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1> and
Gostic et al. (2020) <doi:10.1101/2020.06.18.20134858>.
Author: Sam Abbott [aut] ,
Joel Hellewell [aut] ,
Katharine Sherratt [aut],
Katelyn Gostic [aut],
Joe Hickson [aut],
Hamada S. Badr [aut] ,
Michael DeWitt [aut] ,
James M. Azam [aut] ,
Adrian Lison [aut] ,
Robin Thompson [ctb],
Sophie Meakin [ctb],
James Mun [...truncated...]
Maintainer: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
Diff between EpiNow2 versions 1.8.0 dated 2026-02-04 and 1.9.0 dated 2026-06-16
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EpiNow2-1.9.0/EpiNow2/R/extract.R | 33 EpiNow2-1.9.0/EpiNow2/R/fit.R | 4 EpiNow2-1.9.0/EpiNow2/R/format.R | 25 EpiNow2-1.9.0/EpiNow2/R/get.R | 99 EpiNow2-1.9.0/EpiNow2/R/opts.R | 197 EpiNow2-1.9.0/EpiNow2/R/plot.R | 38 EpiNow2-1.9.0/EpiNow2/R/preprocessing.R | 25 EpiNow2-1.9.0/EpiNow2/R/regional_epinow.R | 22 EpiNow2-1.9.0/EpiNow2/R/report.R | 4 EpiNow2-1.9.0/EpiNow2/R/setup.R | 10 EpiNow2-1.9.0/EpiNow2/R/simulate_infections.R | 44 EpiNow2-1.9.0/EpiNow2/R/simulate_secondary.R | 34 EpiNow2-1.9.0/EpiNow2/R/stan.R | 5 EpiNow2-1.9.0/EpiNow2/R/stanmodels.R | 3 EpiNow2-1.9.0/EpiNow2/R/summarise.R | 161 EpiNow2-1.9.0/EpiNow2/R/utilities.R | 94 EpiNow2-1.9.0/EpiNow2/README.md | 7 EpiNow2-1.9.0/EpiNow2/build/partial.rdb |binary EpiNow2-1.9.0/EpiNow2/build/vignette.rds |binary EpiNow2-1.9.0/EpiNow2/data/example_truncated.rda |binary EpiNow2-1.9.0/EpiNow2/inst/WORDLIST | 1 EpiNow2-1.9.0/EpiNow2/inst/doc/EpiNow2.Rmd | 82 EpiNow2-1.9.0/EpiNow2/inst/doc/EpiNow2.html | 111 EpiNow2-1.9.0/EpiNow2/inst/doc/case-studies.Rmd | 41 EpiNow2-1.9.0/EpiNow2/inst/doc/case-studies.html | 73 EpiNow2-1.9.0/EpiNow2/inst/doc/delays.Rmd |only EpiNow2-1.9.0/EpiNow2/inst/doc/delays.html |only EpiNow2-1.9.0/EpiNow2/inst/doc/epinow.Rmd | 37 EpiNow2-1.9.0/EpiNow2/inst/doc/epinow.html | 58 EpiNow2-1.9.0/EpiNow2/inst/doc/estimate_dist.R |only EpiNow2-1.9.0/EpiNow2/inst/doc/estimate_dist.Rmd |only EpiNow2-1.9.0/EpiNow2/inst/doc/estimate_dist.html |only EpiNow2-1.9.0/EpiNow2/inst/doc/estimate_dist_workflow.Rmd |only EpiNow2-1.9.0/EpiNow2/inst/doc/estimate_dist_workflow.html |only EpiNow2-1.9.0/EpiNow2/inst/doc/estimate_infections.Rmd | 2 EpiNow2-1.9.0/EpiNow2/inst/doc/estimate_infections.html | 4 EpiNow2-1.9.0/EpiNow2/inst/doc/estimate_infections_options.Rmd | 183 EpiNow2-1.9.0/EpiNow2/inst/doc/estimate_infections_options.html | 246 EpiNow2-1.9.0/EpiNow2/inst/doc/estimate_infections_workflow.Rmd | 92 EpiNow2-1.9.0/EpiNow2/inst/doc/estimate_infections_workflow.html | 264 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EpiNow2-1.9.0/EpiNow2/tests/testthat/test-checks.R | 28 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-delays.R | 322 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-dist.R | 24 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-dist_spec.R | 129 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-epinow.R | 124 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-estimate_dist.R |only EpiNow2-1.9.0/EpiNow2/tests/testthat/test-estimate_infections.R | 273 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-estimate_secondary.R | 67 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-estimate_truncation.R | 193 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-forecast-infections.R | 35 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-obs_opts.R | 1 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-regional_epinow.R | 51 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-regional_summary.R | 18 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-rt_opts.R | 6 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-stan-convole.R | 12 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-stan-delays.R | 39 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-stan-generated_quantities.R | 34 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-stan-guassian-process.R | 12 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-stan-infections.R | 24 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-stan-observation_model.R | 11 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-stan-pmfs.R | 22 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-stan-rt.R | 114 EpiNow2-1.9.0/EpiNow2/tests/testthat/test-stan-secondary.R | 8 EpiNow2-1.9.0/EpiNow2/vignettes/EpiNow2-plot_estimates-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/EpiNow2-plot_regional_epinow_summary-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/EpiNow2.Rmd | 82 EpiNow2-1.9.0/EpiNow2/vignettes/EpiNow2.Rmd.orig | 12 EpiNow2-1.9.0/EpiNow2/vignettes/case-studies.Rmd | 41 EpiNow2-1.9.0/EpiNow2/vignettes/delays-convolution-1.png |only EpiNow2-1.9.0/EpiNow2/vignettes/delays-plot-distributions-1.png |only EpiNow2-1.9.0/EpiNow2/vignettes/delays-plot-distributions-2.png |only 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|only EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections.Rmd | 2 EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections_options-bp-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections_options-default-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections_options-fixed-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections_options-gp_projection-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections_options-lower_accuracy-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections_options-no_delays-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections_options-nonparametric-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections_options-susceptible_depletion-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections_options-truncation-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections_options-weekly_rw-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/estimate_infections_options.Rmd | 183 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|only EpiNow2-1.9.0/EpiNow2/vignettes/prior_choice_guide-workflow-step3-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/prior_choice_guide-workflow-step3-2.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/prior_choice_guide-workflow-step4-1.png |binary EpiNow2-1.9.0/EpiNow2/vignettes/prior_choice_guide.Rmd | 183 339 files changed, 24424 insertions(+), 10288 deletions(-)
Title: Powerful 'SAS' Inspired Concepts for more Efficient Bigger
Outputs
Description: The main goal is to make descriptive evaluations easier to create bigger and more complex outputs in less time with less code. Introducing format containers with multilabels <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/p06ciqes4eaqo6n0zyqtz9p21nfb.htm>, a more powerful summarise which is capable to output every possible combination of the provided grouping variables in one go <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/p0jvbbqkt0gs2cn1lo4zndbqs1pe.htm>, tabulation functions which can create any table in different styles <https://documentation.sas.com/doc/en/pgmsascdc/v_067/proc/n1ql5xnu0k3kdtn11gwa5hc7u435.htm> and other more readable functions. The code is optimized to work fast even with datasets of over a million observations.
Author: Tim Siebenmorgen [aut, cre, cph]
Maintainer: Tim Siebenmorgen <qol_package@proton.me>
Diff between qol versions 1.3.1 dated 2026-05-16 and 1.3.2 dated 2026-06-16
DESCRIPTION | 6 MD5 | 109 NAMESPACE | 9 NEWS.md | 64 R/any_table.R | 6483 ++++++++++++++++----------------- R/code_statistics.R |only R/compute.R | 1073 ++--- R/create_format.R | 13 R/crosstabs.R | 2762 +++++++------- R/dummy_data.R | 777 +-- R/excel_helpers.R | 4133 ++++++++++----------- R/export_with_style.R | 934 ++-- R/frequencies.R | 3451 ++++++++--------- R/globals.R | 191 R/if_else.R | 2096 +++++----- R/import_export.R | 1205 +++--- R/loading.R | 35 R/messages.R | 3373 ++++++++--------- R/options.R | 1976 +++++----- R/qol.R | 268 - R/recode.R | 18 R/retain.R | 986 ++--- R/small_helpers.R | 22 R/sort_plus.R | 10 R/statistics.R | 1278 +++--- R/strings.R | 45 R/summarise_plus.R | 260 - README.md | 2 inst/tinytest/test-any_table.R | 1850 ++++----- inst/tinytest/test-code_statistics.R |only inst/tinytest/test-compute.R | 258 - inst/tinytest/test-export_with_style.R | 199 - inst/tinytest/test-if_else.R | 828 ++-- inst/tinytest/test-options.R | 535 +- inst/tinytest/test-retain.R | 464 +- inst/tinytest/test-summarise_plus.R | 2007 +++++----- man/any_table.Rd | 2 man/code_statistics.Rd |only man/concat.Rd | 125 man/crosstabs.Rd | 2 man/drop_type_vars.Rd | 87 man/excel_output_style.Rd | 6 man/export_with_style.Rd | 9 man/frequencies.Rd | 2 man/if_else.Rd | 3 man/import_export.Rd | 2 man/libname.Rd | 5 man/modify_number_formats.Rd | 2 man/modify_output_style.Rd | 2 man/number_format_style.Rd | 2 man/qol-package.Rd | 14 man/qol_options.Rd | 14 man/recode.Rd | 5 man/retain.Rd | 56 man/round_values.Rd | 14 man/style_options.Rd | 78 man/summarise_plus.Rd | 13 57 files changed, 19408 insertions(+), 18755 deletions(-)
Title: Tools for Multilayer and Single Layer Network Modeling
Description: Estimation and bootstrap utilities for single layer and multilayer
Mixed Graphical Models, including functions for centrality, bridge metrics,
membership stability, and plotting (De Martino et al. (2026) <doi:10.48550/arXiv.2602.05716>).
Author: Maria De Martino [aut, cre],
Caterina Gregorio [aut],
Adrien Perigord [ctb],
Hudson Golino [ctb],
Jonas Haslbeck [ctb]
Maintainer: Maria De Martino <maria.demartino@uniud.it>
Diff between MixMashNet versions 1.0.0 dated 2026-04-30 and 1.1.0 dated 2026-06-16
DESCRIPTION | 6 MD5 | 36 ++--- NAMESPACE | 2 NEWS.md | 12 + R/community_scores.R | 67 +++++++++- R/get_centrality.R | 275 ++++++++++++++++++++++++++++++++++++--------- R/get_edges.R | 257 +++++++++++++++++++++++++++++++++--------- R/infer_mgm_spec.R | 27 +++- R/layouts.R | 141 +++++++++++++++-------- R/mixMN.R | 33 +++-- R/mixMN_from_wadj.R | 3 R/multimixMN.R | 37 ++++-- R/plot-network.R | 54 ++++++-- R/plot.R | 31 ++++- man/get_centrality.Rd | 4 man/get_edges.Rd | 4 man/mixMN.Rd | 2 man/plot.mixMN_fit.Rd | 12 + man/plot.multimixMN_fit.Rd | 19 ++- 19 files changed, 790 insertions(+), 232 deletions(-)
Title: Download Time Series Data from the U.S. Bureau of Labor
Statistics
Description: These functions provide a convenient interface for downloading data from the U.S. Bureau of Labor Statistics <https://www.bls.gov>. The functions in this package utilize flat files produced by the Bureau of Labor Statistics, which contain full series history. These files include employment, unemployment, wages, prices, industry and occupational data at a national, state, and sub-state level, depending on the series. Individual functions are included for those programs which have data available at the state level. The core functions provide direct access to the Current Employment Statistics (CES) <https://www.bls.gov/ces/>, Local Area Unemployment Statistics (LAUS) <https://www.bls.gov/lau/>, Occupational Employment and Wage Statistics (OEWS) <https://www.bls.gov/oes/> and Alternative Measures of Labor Underutilization (SALT) <https://www.bls.gov/lau/stalt.htm> data produced by the Bureau of Labor Statistics.
Author: Nevada Department of Employment, Training, and Rehabilitation [cph],
David Schmidt [aut, cre],
Mark Rembert [aut]
Maintainer: David Schmidt <deschmidt@detr.nv.gov>
Diff between BLSloadR versions 0.4.5 dated 2026-04-23 and 0.4.6 dated 2026-06-16
DESCRIPTION |only LICENSE |only MD5 | 8 ++++---- NAMESPACE |only NEWS.md |only R/download_helpers.R | 1 - README.md |only build |only data/area_lookup.rda |only data/ind_lookup.rda |binary inst |only man |only 12 files changed, 4 insertions(+), 5 deletions(-)
More information about GenerateIndexPedigree at CRAN
Permanent link
Title: Bayesian Inference for Neyman-Scott Point Processes
Description: The Bayesian MCMC estimation of parameters for Thomas-type cluster
point process with various inhomogeneities. It allows for inhomogeneity in
(i) distribution of parent points, (ii) mean number of points in a cluster,
(iii) cluster spread. The package also allows for the Bayesian MCMC
algorithm for the homogeneous generalized Thomas process. The cluster size
is allowed to have a variance that is greater or less than the expected
value (cluster sizes are over or under dispersed). Details are described in
Dvořák, Remeš, Beránek & Mrkvička (2022) <arXiv: 10.48550/arXiv.2205.07946>.
Author: Mrkvicka Tomas [aut],
Dvorak Jiri [aut],
Beranek Ladislav [aut],
Remes Radim [aut, cre],
Park Jaewoo [ctb],
Lee Sujeong [ctb]
Maintainer: Remes Radim <inrem@jcu.cz>
Diff between binspp versions 0.2.3 dated 2025-12-03 and 0.2.4 dated 2026-06-16
DESCRIPTION | 9 MD5 | 59 R/C_prep.R | 44 R/C_prep_naive.R | 54 R/binspp_auxiliary.R | 2987 ++++++++++++++++++++-------------------- R/estgtp.R | 612 ++++---- R/estgtpr.R | 230 +-- R/estinternsp.R | 1183 ++++++++------- R/rgenp.R | 72 R/rgtp.R | 225 +-- R/trees_N4.R | 2 build/partial.rdb |binary build/vignette.rds |only inst/doc |only man/estgtp.Rd | 75 - man/estgtpr.Rd | 81 - man/estinternsp.Rd | 77 - man/estintp.Rd | 20 man/first_step.Rd | 4 man/plot.output_estintp.Rd | 8 man/plot_conn.Rd | 10 man/print.output_estinternsp.Rd | 77 - man/print.output_estintp.Rd | 8 man/rThomasInhom.Rd | 28 man/rawMCMCoutput.Rd | 8 man/re_estimate.Rd | 8 man/rgtp.Rd | 10 man/simulate.output_estintp.Rd | 8 man/trees_N4.Rd | 2 tests |only vignettes |only 31 files changed, 3114 insertions(+), 2787 deletions(-)
Title: Regression, Inference, and General Data Analysis Tools in R
Description: A set of tools to streamline data analysis. Learning both R and introductory statistics at the same time can be challenging, and so we created 'rigr' to facilitate common data analysis tasks and enable learners to focus on statistical concepts. We provide easy-to-use interfaces for descriptive statistics, one- and two-sample inference, and regression analyses. 'rigr' output includes key information while omitting unnecessary details that can be confusing to beginners. Heteroscedasticity-robust ("sandwich") standard errors are returned by default, and multiple partial F-tests and tests for contrasts are easy to specify. A single regression function can fit both linear and generalized linear models, allowing students to more easily make connections between different classes of models.
Author: Amy D Willis [aut, cre] ,
Taylor Okonek [aut],
Charles J Wolock [aut],
Brian D Williamson [aut],
Scott S Emerson [aut],
Andrew J Spieker [aut],
Yiqun T Chen [aut],
Travis Y Hee Wai [ctb],
James P Hughes [ctb],
R Core Team [ctb],
Akhil S Bhel [ctb],
T [...truncated...]
Maintainer: Amy D Willis <adwillis@uw.edu>
Diff between rigr versions 1.0.9 dated 2026-04-03 and 1.0.10 dated 2026-06-16
DESCRIPTION | 6 MD5 | 12 build/vignette.rds |binary inst/doc/descrip_intro.html | 396 +++------------------ inst/doc/one_and_two_sample_inference.html | 467 ++++--------------------- inst/doc/regress_intro.html | 539 +++++------------------------ tests/testthat/test_wilcoxon.R | 110 +++-- 7 files changed, 342 insertions(+), 1188 deletions(-)
Title: Empirical Bayes Methods for Pharmacovigilance
Description: A suite of empirical Bayes methods to use in pharmacovigilance. Contains various model fitting and post-processing functions. For more details see Tan et al. (2025) <doi:10.1002/sim.70195>, <doi:10.48550/arXiv.2512.01057>; Koenker and Mizera (2014) <doi:10.1080/01621459.2013.869224>; Efron (2016) <doi:10.1093/biomet/asv068>.
Author: Yihao Tan [aut, cre] ,
Marianthi Markatou [aut] ,
Saptarshi Chakraborty [aut] ,
Raktim Mukhopadhyay [aut]
Maintainer: Yihao Tan <yihaotan@buffalo.edu>
Diff between pvEBayes versions 0.2.2 dated 2026-03-13 and 0.3.0 dated 2026-06-16
DESCRIPTION | 15 MD5 | 54 +-- NAMESPACE | 2 R/data.R | 55 +++ R/pvEBayes-package.R | 61 ++- R/pvEBayes_main_function.R | 461 ++++++++++++++++++-------- R/pvEBayes_object_S3_methods.R | 261 +++++++++++++- R/r_contin_table_gen.R | 476 +++++++++++++-------------- R/srr-stats-standards.R | 203 ++++++----- README.md | 56 ++- data/faers_opioid_mental.rda |only data/vigi_opioid_mental.rda |only inst/CITATION | 13 inst/doc/pvEBayes-introduction.R | 43 ++ inst/doc/pvEBayes-introduction.Rmd | 85 ++++ inst/doc/pvEBayes-introduction.html | 372 +++++++++++++++------ man/dot-KM_fit.Rd | 17 man/faers_opioid_mental.Rd |only man/get_posterior_prob.Rd |only man/plot.pvEBayes.Rd | 3 man/posterior_draws.Rd | 5 man/pvEBayes-package.Rd | 5 man/pvEBayes.Rd | 105 +++-- man/pvEBayes_tune.Rd | 4 man/summary.pvEBayes.Rd | 25 + man/summary_table_pvEBayes.Rd |only man/tuning_efron.Rd | 2 man/vigi_opioid_mental.Rd |only tests/testthat/test-correctness.R | 274 +++++++++++++-- tests/testthat/test-pvEBayes_main_function.R | 42 +- vignettes/pvEBayes-introduction.Rmd | 85 ++++ 31 files changed, 1917 insertions(+), 807 deletions(-)
Title: Characterise Tables of an OMOP Common Data Model Instance
Description: Summarises key information in data mapped to the Observational
Medical Outcomes Partnership (OMOP) common data model. Assess suitability to
perform specific epidemiological studies and explore the different domains
to obtain feasibility counts and trends.
Author: Marta Alcalde-Herraiz [aut] ,
Kim Lopez-Guell [aut] ,
Elin Rowlands [aut] ,
Cecilia Campanile [aut, cre] ,
Edward Burn [aut] ,
Marti Catala [aut]
Maintainer: Cecilia Campanile <cecilia.campanile@ndorms.ox.ac.uk>
Diff between OmopSketch versions 1.0.1 dated 2026-02-06 and 1.1.0 dated 2026-06-16
DESCRIPTION | 8 MD5 | 79 ++--- NEWS.md | 19 + R/plotObservationPeriod.R | 45 ++ R/plotPerson.R | 32 +- R/plotTrend.R | 8 R/summariseClinicalRecords.R | 232 ++++++++++----- R/summariseConceptIdCounts.R | 19 - R/summariseConceptSetCounts.R | 5 R/summariseInternal.R | 46 +- R/summariseMissingData.R | 27 + R/summariseObservationPeriod.R | 23 + R/summarisePerson.R | 59 +++ R/summariseTrend.R | 80 ++++- R/tableClinicalRecords.R | 8 R/tableConceptIdCounts.R | 26 - R/tableMissingData.R | 15 R/tableTopConceptCounts.R | 12 README.md | 42 ++ inst/brand/readme.yml | 136 ++++---- inst/doc/database_characteristics.html | 2 man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-14-1.png |only man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/plotObservationPeriod.Rd | 4 man/plotTrend.Rd | 2 man/summariseTrend.Rd | 3 man/tableClinicalRecords.Rd | 3 tests/testthat/test-summariseClinicalRecords.R | 139 ++++++++ tests/testthat/test-summariseConceptIdCounts.R | 2 tests/testthat/test-summariseObservationPeriod.R | 18 + tests/testthat/test-summariseTrend.R | 62 ++-- vignettes/articles/summarise_clinical_tables_records.Rmd | 46 +- vignettes/articles/summarise_concept_id_counts.Rmd | 49 ++- vignettes/articles/summarise_person.Rmd | 106 ++++-- vignettes/articles/summarise_trend.Rmd | 105 ++++-- 41 files changed, 1064 insertions(+), 398 deletions(-)
Title: A Collection of ML Tools for Species Detection and
Classification in Camera Trap Images and Videos
Description: Functions required to classify subjects within camera trap field data. The package can handle both images and videos. The authors recommend a two-step approach using Microsoft's 'MegaDector' model and then a second model trained on the classes of interest.
Author: Kyra Swanson [aut, cre] ,
Mathias Tobler [aut]
Maintainer: Kyra Swanson <tswanson@sdzwa.org>
Diff between animl versions 3.2.0 dated 2026-02-03 and 3.3.0 dated 2026-06-16
animl-3.2.0/animl/R/split.R |only animl-3.2.0/animl/man/test_main.Rd |only animl-3.2.0/animl/man/train_main.Rd |only animl-3.2.0/animl/man/train_val_test.Rd |only animl-3.3.0/animl/DESCRIPTION | 15 animl-3.3.0/animl/LICENSE | 2 animl-3.3.0/animl/MD5 | 145 ++- animl-3.3.0/animl/NAMESPACE | 105 +- animl-3.3.0/animl/NEWS.md |only animl-3.3.0/animl/R/classification.R | 259 +++--- animl-3.3.0/animl/R/detection.R | 238 ++++-- animl-3.3.0/animl/R/export.R | 472 ++++++++---- animl-3.3.0/animl/R/file_management.R | 556 +++++++++----- animl-3.3.0/animl/R/install.R | 579 ++++++++------- animl-3.3.0/animl/R/reid.R | 259 +++--- animl-3.3.0/animl/R/sequence_classification.R | 494 ++++++------ animl-3.3.0/animl/R/train.R | 102 +- animl-3.3.0/animl/R/video_processing.R | 97 +- animl-3.3.0/animl/R/visualization.R | 140 ++- animl-3.3.0/animl/R/zzz.R | 56 - animl-3.3.0/animl/README.md | 328 ++++---- animl-3.3.0/animl/man/WorkingDirectory.Rd | 48 - animl-3.3.0/animl/man/active_times.Rd |only animl-3.3.0/animl/man/animl_install.Rd | 44 - animl-3.3.0/animl/man/animl_install_instructions.Rd | 22 animl-3.3.0/animl/man/build_file_manifest.Rd | 86 +- animl-3.3.0/animl/man/check_animl_py.Rd |only animl-3.3.0/animl/man/check_file.Rd | 50 - animl-3.3.0/animl/man/check_python.Rd | 44 - animl-3.3.0/animl/man/classify.Rd | 104 +- animl-3.3.0/animl/man/compute_batched_distance_matrix.Rd | 66 - animl-3.3.0/animl/man/compute_distance_matrix.Rd | 48 - animl-3.3.0/animl/man/cosine_distance.Rd | 44 - animl-3.3.0/animl/man/create_pyenv.Rd | 38 animl-3.3.0/animl/man/delete_pyenv.Rd | 40 - animl-3.3.0/animl/man/detect.Rd | 113 +- animl-3.3.0/animl/man/download_model.Rd | 50 - animl-3.3.0/animl/man/euclidean_squared_distance.Rd | 44 - animl-3.3.0/animl/man/export_camptrapdp.Rd |only animl-3.3.0/animl/man/export_camtrapR.Rd | 93 +- animl-3.3.0/animl/man/export_coco.Rd | 56 - animl-3.3.0/animl/man/export_folders.Rd | 90 +- animl-3.3.0/animl/man/export_megadetector.Rd | 62 - animl-3.3.0/animl/man/export_timelapse.Rd | 48 - animl-3.3.0/animl/man/export_train_val_test.Rd |only animl-3.3.0/animl/man/export_yolo.Rd |only animl-3.3.0/animl/man/extract_frames.Rd | 90 +- animl-3.3.0/animl/man/extract_miew_embeddings.Rd | 74 - animl-3.3.0/animl/man/get_animals.Rd | 44 - animl-3.3.0/animl/man/get_empty.Rd | 44 - animl-3.3.0/animl/man/get_frame_as_image.Rd | 44 - animl-3.3.0/animl/man/list_models.Rd | 40 - animl-3.3.0/animl/man/load_animl.Rd | 46 - animl-3.3.0/animl/man/load_class_list.Rd | 40 - animl-3.3.0/animl/man/load_classifier.Rd | 65 - animl-3.3.0/animl/man/load_data.Rd | 44 - animl-3.3.0/animl/man/load_detector.Rd | 53 - animl-3.3.0/animl/man/load_json.Rd | 44 - animl-3.3.0/animl/man/load_miew.Rd | 44 - animl-3.3.0/animl/man/load_yaml.Rd |only animl-3.3.0/animl/man/parse_detections.Rd | 72 - animl-3.3.0/animl/man/plot_all_bounding_boxes.Rd | 97 +- animl-3.3.0/animl/man/plot_box.Rd | 95 +- animl-3.3.0/animl/man/remove_diagonal.Rd | 40 - animl-3.3.0/animl/man/remove_link.Rd | 48 - animl-3.3.0/animl/man/save_classifier.Rd | 88 -- animl-3.3.0/animl/man/save_data.Rd | 52 - animl-3.3.0/animl/man/save_json.Rd | 52 - animl-3.3.0/animl/man/save_yaml.Rd |only animl-3.3.0/animl/man/sequence_calculation.Rd |only animl-3.3.0/animl/man/sequence_classification.Rd | 143 +-- animl-3.3.0/animl/man/single_classification.Rd | 77 + animl-3.3.0/animl/man/test_classifier.Rd |only animl-3.3.0/animl/man/train_classifier.Rd |only animl-3.3.0/animl/man/update_animl_py.Rd | 40 - animl-3.3.0/animl/man/update_labels_from_folders.Rd | 52 - animl-3.3.0/animl/tests |only 77 files changed, 3613 insertions(+), 2952 deletions(-)
Title: Additional Documentation and Regression Tests for
'stats::free1way()'
Description: Function 'stats::free1way()' implements semiparametrically
efficient population- and permutation-based inference in
distribution-free stratified K-sample oneway layouts. This package
provides additional documentation, including a detailed description
of the implementation, and serves as a home for extensive regression tests.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Frank E Harrell Jr [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between free1way.docreg versions 1.0-0 dated 2026-05-22 and 1.0-1 dated 2026-06-16
free1way.docreg-1.0-0/free1way.docreg/build/partial.rdb |only free1way.docreg-1.0-0/free1way.docreg/vignettes/free1way.Rout.save |only free1way.docreg-1.0-1/free1way.docreg/DESCRIPTION | 9 free1way.docreg-1.0-1/free1way.docreg/MD5 | 22 free1way.docreg-1.0-1/free1way.docreg/NAMESPACE | 31 free1way.docreg-1.0-1/free1way.docreg/build/vignette.rds |binary free1way.docreg-1.0-1/free1way.docreg/cleanup | 2 free1way.docreg-1.0-1/free1way.docreg/inst/NEWS.Rd | 10 free1way.docreg-1.0-1/free1way.docreg/inst/doc/free1way.R | 14 free1way.docreg-1.0-1/free1way.docreg/inst/doc/free1way.Rnw | 731 +++++----- free1way.docreg-1.0-1/free1way.docreg/inst/doc/free1way.pdf |binary free1way.docreg-1.0-1/free1way.docreg/inst/nuweb |only free1way.docreg-1.0-1/free1way.docreg/tests/bugfixes.R |only free1way.docreg-1.0-1/free1way.docreg/vignettes/free1way.Rnw | 731 +++++----- 14 files changed, 825 insertions(+), 725 deletions(-)
More information about free1way.docreg at CRAN
Permanent link
Title: Community Niche Position and Width Estimation Tools
Description: Provides methods for estimating species niche position and niche
breadth under continuous environmental gradients. The package implements
canonical correspondence analysis (CCA), partial CCA (pCCA), generalized
additive models (GAM), and Levins' niche breadth metrics for species-level
and community-level analyses. Methods are based on ter Braak (1986)
<doi:10.2307/1938672>, Okie et al. (2015) <doi:10.1098/rspb.2014.2630>,
Feng et al. (2020) <doi:10.1111/mec.15441>, Wood (2017)
<doi:10.1201/9781315370279>, and Levins (1968, ISBN:978-0691080628).
Author: Shuotao Zhou [aut, cre],
Kai Feng [aut],
Ye Deng [aut]
Maintainer: Shuotao Zhou <zhoushuotao@stu.hunau.edu.cn>
Diff between EcoNiche versions 1.0.2 dated 2026-03-10 and 1.0.3 dated 2026-06-16
DESCRIPTION | 8 - MD5 | 27 ++-- NEWS.md | 15 +- R/cca.R | 35 ++--- R/data.R |only README.md | 157 ++++++++++++------------- build/vignette.rds |binary data |only inst/doc/coniche-workflow.R | 90 ++++++++++++-- inst/doc/coniche-workflow.Rmd | 159 ++++++++++++++++++++------ inst/doc/coniche-workflow.html | 248 ++++++++++++++++++++++++++++++++++++++++- man/cca_workflow.Rd | 23 +-- man/plant_env.Rd |only man/plant_group.Rd |only man/plant_otu.Rd |only vignettes/coniche-workflow.Rmd | 159 ++++++++++++++++++++------ 16 files changed, 700 insertions(+), 221 deletions(-)
Title: Dependency Coefficients
Description: Functions to compute coefficients measuring the dependence of two or more than two variables. The functions can be deployed to gain information about functional dependencies of the variables with emphasis on monotone functions. The statistics describe how well one response variable can be approximated by a monotone function of other variables. In regression analysis the variable selection is an important issue. In this framework the functions could be useful tools in modeling the regression function. Detailed explanations on the subject can be found in papers Liebscher (2014) <doi:10.2478/demo-2014-0004>; Liebscher (2017) <doi:10.1515/demo-2017-0012>; Liebscher (2021): <https://arfjournals.com/image/catalog/Journals%20Papers/AJSS/No%202%20(2021)/4-AJSS_123-150.pdf>; Liebscher (2021): Kendall regression coefficient. Computational Statistics and Data Analysis 157. 107140.
Author: Eckhard Liebscher [aut, cre]
Maintainer: Eckhard Liebscher <eckhard.liebscher@hs-merseburg.de>
Diff between depcoeff versions 0.1.1 dated 2026-01-20 and 1.0.1 dated 2026-06-16
depcoeff-0.1.1/depcoeff/inst |only depcoeff-1.0.1/depcoeff/DESCRIPTION | 10 depcoeff-1.0.1/depcoeff/MD5 | 25 - depcoeff-1.0.1/depcoeff/NAMESPACE | 5 depcoeff-1.0.1/depcoeff/NEWS.md |only depcoeff-1.0.1/depcoeff/R/packdepcoeff.R | 716 +++++++++++++++++++++++++------ depcoeff-1.0.1/depcoeff/man/kendr.Rd | 31 - depcoeff-1.0.1/depcoeff/man/kendrm.Rd |only depcoeff-1.0.1/depcoeff/man/kendrs.Rd | 21 depcoeff-1.0.1/depcoeff/man/kendtaum.Rd |only depcoeff-1.0.1/depcoeff/man/spearr.Rd | 14 depcoeff-1.0.1/depcoeff/man/spearrs.Rd | 25 - depcoeff-1.0.1/depcoeff/man/xic.Rd |only depcoeff-1.0.1/depcoeff/man/zetac.Rd | 20 depcoeff-1.0.1/depcoeff/man/zetaci.Rd | 18 depcoeff-1.0.1/depcoeff/man/zetapm.Rd | 21 16 files changed, 701 insertions(+), 205 deletions(-)
Title: Toolkit for Analyzing Curricular Complexity
Description: Enables educational researchers and practitioners to calculate the curricular complexity of a plan of study, visualize its prerequisite structure at scale, and conduct customizable analyses. The original tool can be found at <https://curricularanalytics.org>. Additional functions to explore curriculum complexity from the literature are also included.
Author: David Reeping [aut, cre]
Maintainer: David Reeping <reepindp@ucmail.uc.edu>
Diff between CurricularComplexity versions 1.0.1 dated 2026-01-08 and 1.0.2 dated 2026-06-16
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/deferment_factor.R | 2 +- inst/doc/CurricularComplexity-demo.Rmd | 2 +- inst/doc/CurricularComplexity-demo.html | 10 +++++----- vignettes/CurricularComplexity-demo.Rmd | 2 +- 6 files changed, 16 insertions(+), 16 deletions(-)
More information about CurricularComplexity at CRAN
Permanent link
Title: Conditionally Symmetric Multidimensional Gaussian Mixture Model
Description: Implements the conditionally symmetric multidimensional Gaussian mixture model (csmGmm) for large-scale testing of composite null hypotheses in genetic association applications such as mediation analysis, pleiotropy analysis, and replication analysis. In such analyses, we typically have J sets of K test statistics where K is a small number (e.g. 2 or 3) and J is large (e.g. 1 million). For each one of the J sets, we want to know if we can reject all K individual nulls. Please see the vignette for a quickstart guide. The paper describing these methods is "Testing a Large Number of Composite Null Hypotheses Using Conditionally Symmetric Multidimensional Gaussian Mixtures in Genome-Wide Studies" by Sun R, McCaw Z, & Lin X (Journal of the American Statistical Association 2025, <doi:10.1080/01621459.2024.2422124>).
Author: Ryan Sun [aut, cre],
Emily Kim [aut]
Maintainer: Ryan Sun <ryansun.work@gmail.com>
Diff between csmGmm versions 0.4.0 dated 2025-09-16 and 0.5.0 dated 2026-06-16
DESCRIPTION | 21 +++++++++------ MD5 | 48 ++++++++++++++++++++++-------------- NAMESPACE | 18 ++++++++++++- R/check_incongruous.R | 24 +++++++++++++++++- R/create_plots.R |only R/generate_init_lists.R |only R/globals.R | 3 +- R/prepare_csmgmm_data.R |only R/process_lfdr_results.R |only R/read_gwas.R |only R/symm_fit_cor.R | 5 +-- R/symm_fit_cor_fulllik.R | 5 +-- R/symm_fit_cor_noAssumption.R | 5 +-- R/symm_fit_cor_rho.R | 5 +-- R/symm_fit_ind.R | 5 +-- R/symm_fit_ind_noAssumption.R | 5 +-- build/vignette.rds |binary inst/doc/csmGmm_tutorial.html | 7 +++-- man/create_plots.Rd |only man/find_4d.Rd |only man/generate_init_lists.Rd |only man/prepare_csmgmm_data.Rd |only man/process_lfdr_results.Rd |only man/read_gwas_one.Rd |only man/read_gwas_set.Rd |only man/symm_fit_cor_EM.Rd | 2 - man/symm_fit_cor_EM_fulllik.Rd | 2 - man/symm_fit_cor_EM_noAssumption.Rd | 2 - man/symm_fit_cor_EM_rho.Rd | 2 - man/symm_fit_ind_EM.Rd | 2 - man/symm_fit_ind_EM_noAssumption.Rd | 2 - 31 files changed, 107 insertions(+), 56 deletions(-)
Title: Easily Install and Load 'tesselle' Packages
Description: Easy install and load key packages from the 'tesselle' suite
in a single step. The 'tesselle' suite is a collection of packages for
research and teaching in archaeology. These packages focus on
quantitative analysis methods developed for archaeology. The
'tesselle' packages are designed to work seamlessly together and to
complement general-purpose and other specialized statistical packages.
These packages can be used to explore and analyze common data types in
archaeology: count data, compositional data and chronological data.
Learn more about 'tesselle' at <https://www.tesselle.org>.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between tesselle versions 1.6.0 dated 2025-04-28 and 1.7.0 dated 2026-06-16
DESCRIPTION | 28 +++++++++++++++------------- MD5 | 13 +++++++------ NEWS.md | 10 ++++++++++ R/tesselle-package.R | 25 +++++++------------------ README.md | 31 ++++++++++++++++++++----------- build |only inst/CITATION | 2 +- man/tesselle-package.Rd | 38 +++++++++++++++++++++----------------- 8 files changed, 81 insertions(+), 66 deletions(-)
Title: Identification of Cell Types, Inference of Lineage Trees, and
Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Description: Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the 'StemID2' algorithm (Herman, J.S., Sagar, Grun D. (2018) <DOI:10.1038/nmeth.4662>). 'VarID2' is part of this package and allows quantification of biological gene expression noise at single-cell resolution (Rosales-Alvarez, R.E., Rettkowski, J., Herman, J.S., Dumbovic, G., Cabezas-Wallscheid, N., Grun, D. (2023) <DOI:10.1186/s13059-023-02974-1>).
Author: Dominic Gruen [aut, cre]
Maintainer: Dominic Gruen <dominic.gruen@gmail.com>
Diff between RaceID versions 0.4.1 dated 2026-06-12 and 0.4.2 dated 2026-06-16
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 1 + R/VarID_functions.R | 15 +++++++-------- inst/doc/RaceID.html | 4 ++-- man/pruneKnn.Rd | 2 +- 6 files changed, 22 insertions(+), 22 deletions(-)
Title: Extreme Value Analysis for Circular Data
Description: General functions for performing extreme value analysis on a circular
domain as part of the statistical methodology in the paper by Konzen, E.,
Neves, C., and Jonathan, P. (2021). Modeling nonstationary extremes of storm
severity: Comparing parametric and semiparametric inference.
Environmetrics, 32(4), e2667 <doi:10.1002/env.2667>.
Author: Evandro Konzen [aut, cre]
Maintainer: Evandro Konzen <circularev.r@gmail.com>
This is a re-admission after prior archival of version 0.1.1 dated 2022-05-13
Diff between circularEV versions 0.1.1 dated 2022-05-13 and 0.1.2 dated 2026-06-16
DESCRIPTION | 26 LICENSE |only MD5 | 58 - R/LocalEstim.R | 12 R/PlotParamEstim.R | 4 R/PolarPlotData.R | 82 - R/PolarPlotRL.R | 72 - R/SplineML.R | 11 R/ThrSelection.R | 21 R/auxFunctions.R | 10 R/thresholdExamplesML.R | 4 R/thresholdExamplesMom.R | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/localMethods.R | 70 - inst/doc/localMethods.Rmd | 63 - inst/doc/localMethods.html | 2113 +++----------------------------------------- inst/doc/splineML.R | 70 - inst/doc/splineML.Rmd | 63 - inst/doc/splineML.html | 2125 +++------------------------------------------ man/HsSP.Rd | 4 man/LocalEstim.Rd | 12 man/PolarPlotData.Rd | 14 man/SplineML.Rd | 11 man/ThrSelection.Rd | 4 man/circularEV-package.Rd | 13 man/drc.Rd | 4 man/thresholdExampleML.Rd | 8 man/thresholdExampleMom.Rd | 6 vignettes/localMethods.Rmd | 63 - vignettes/splineML.Rmd | 63 - 31 files changed, 797 insertions(+), 4211 deletions(-)
Title: Phylogenetic Tree Statistics
Description: Collection of phylogenetic tree statistics,
collected throughout the literature. All functions have been
written to maximize computation speed. The package includes
umbrella functions to calculate all statistics, all balance
associated statistics, or all branching time related statistics.
Furthermore, the 'treestats' package supports summary statistic
calculations on Ltables, provides speed-improved coding of
branching times, Ltable conversion and includes algorithms to
create intermediately balanced trees. Full description can be
found in Janzen (2024) <doi:10.1016/j.ympev.2024.108168>.
Author: Thijs Janzen [cre, aut]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between treestats versions 1.70.11 dated 2026-05-20 and 1.71.12 dated 2026-06-16
treestats-1.70.11/treestats/inst/include/branch_colless.h |only treestats-1.71.12/treestats/DESCRIPTION | 11 - treestats-1.71.12/treestats/MD5 | 50 +++---- treestats-1.71.12/treestats/NAMESPACE | 1 treestats-1.71.12/treestats/NEWS.md | 9 + treestats-1.71.12/treestats/R/RcppExports.R | 8 - treestats-1.71.12/treestats/R/calc_all_stats.R | 4 treestats-1.71.12/treestats/R/calc_brts_stats.R | 4 treestats-1.71.12/treestats/R/crown_age.R | 2 treestats-1.71.12/treestats/R/inv_branch_dist.R |only treestats-1.71.12/treestats/R/list_statistics.R | 2 treestats-1.71.12/treestats/inst/doc/Correlations.html | 8 - treestats-1.71.12/treestats/inst/doc/Getting_started.html | 50 +++---- treestats-1.71.12/treestats/inst/doc/Speed_improvement.html | 4 treestats-1.71.12/treestats/inst/doc/Tree_size.Rmd | 9 + treestats-1.71.12/treestats/inst/doc/Tree_size.html | 20 ++- treestats-1.71.12/treestats/inst/include/crown_age.h | 66 ++-------- treestats-1.71.12/treestats/man/calc_all_stats.Rd | 1 treestats-1.71.12/treestats/man/calc_brts_stats.Rd | 1 treestats-1.71.12/treestats/man/inv_branch_dist.Rd |only treestats-1.71.12/treestats/src/RcppExports.cpp | 25 --- treestats-1.71.12/treestats/src/brts.cpp | 45 +----- treestats-1.71.12/treestats/src/laplacian.cpp | 27 ---- treestats-1.71.12/treestats/src/phylo.cpp | 9 - treestats-1.71.12/treestats/tests/testthat/test-allstats.R | 4 treestats-1.71.12/treestats/tests/testthat/test-brts_stats.R | 2 treestats-1.71.12/treestats/tests/testthat/test-inv_branch_dist.R |only treestats-1.71.12/treestats/vignettes/Tree_size.Rmd | 9 + 28 files changed, 140 insertions(+), 231 deletions(-)
Title: Stylometric Multivariate Analyses
Description: Supervised and unsupervised multivariate methods, supplemented by GUI and some visualizations, to perform various analyses in the field of computational stylistics, authorship attribution, etc. For further reference, see Eder et al. (2016), <https://journal.r-project.org/articles/RJ-2016-007/index.html>. You are also encouraged to visit the Computational Stylistics Group's website <https://computationalstylistics.github.io/>, where a reasonable amount of information about the package and related projects are provided.
Author: Maciej Eder [aut, cre],
Jan Rybicki [aut],
Mike Kestemont [aut],
Steffen Pielstroem [aut]
Maintainer: Maciej Eder <maciejeder@gmail.com>
Diff between stylo versions 0.7.7 dated 2026-05-12 and 0.7.71 dated 2026-06-16
stylo-0.7.7/stylo/R/rolling.classify.r |only stylo-0.7.71/stylo/DESCRIPTION | 12 ++++++------ stylo-0.7.71/stylo/MD5 | 24 ++++++++++++------------ stylo-0.7.71/stylo/NAMESPACE | 2 ++ stylo-0.7.71/stylo/NEWS.md | 7 +++++++ stylo-0.7.71/stylo/R/classify.R | 6 ++++-- stylo-0.7.71/stylo/R/gui.support.R | 1 + stylo-0.7.71/stylo/R/make.samples.R | 6 ++++-- stylo-0.7.71/stylo/R/oppose.R | 2 +- stylo-0.7.71/stylo/R/rolling.classify.R |only stylo-0.7.71/stylo/R/rolling.delta.R | 2 +- stylo-0.7.71/stylo/R/stylo.R | 8 +++++--- stylo-0.7.71/stylo/R/txt.to.words.ext.R | 30 +++++++++++++++++++++++++----- stylo-0.7.71/stylo/man/delete.markup.Rd | 2 +- 14 files changed, 69 insertions(+), 33 deletions(-)
Title: Embed 'SWI'-'Prolog'
Description: Interface to 'SWI'-'Prolog', <https://www.swi-prolog.org/>. This package is normally not loaded directly, please refer to package 'rolog' instead. The purpose of this package is to provide the 'Prolog' runtime on systems that do not have a software installation of 'SWI'-'Prolog'.
Author: Matthias Gondan [aut, com, cre] ,
Jan Wielemaker [ctb, cph] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
This is a re-admission after prior archival of version 10.1.8 dated 2026-05-29
Diff between rswipl versions 10.1.8 dated 2026-05-29 and 10.1.9 dated 2026-06-16
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Title: R Commander Miscellaneous Functions
Description: Various statistical, graphics, and data-management functions used by the Rcmdr package in the R Commander GUI for R.
Author: John Fox [aut],
Manuel Munoz-Marquez [aut, cre],
Robert Muenchen [ctb],
Dan Putler [ctb]
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrMisc versions 2.10.1 dated 2026-01-08 and 2.10.2 dated 2026-06-16
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS | 4 ++++ R/RcmdrMisc-package.R | 18 ++++++------------ R/cv.R | 3 ++- R/numSummary.R | 6 +++--- man/RcmdrMisc-package.Rd | 18 ++++++------------ man/cv.Rd | 4 +++- man/numSummary.Rd | 4 ++-- man/reexports.Rd | 2 +- 10 files changed, 41 insertions(+), 46 deletions(-)
Title: Multivariate Bias Correction of Climate Model Outputs
Description: Calibrate and apply multivariate bias correction algorithms
for climate model simulations of multiple climate variables. Three methods
described by Cannon (2016) <doi:10.1175/JCLI-D-15-0679.1> and
Cannon (2018) <doi:10.1007/s00382-017-3580-6> are implemented --
(i) MBC Pearson correlation (MBCp), (ii) MBC rank correlation (MBCr),
and (iii) MBC N-dimensional PDF transform (MBCn) -- as is the Rank
Resampling for Distributions and Dependences (R2D2) method. An additional
multivariate rescaling method based on the linear Monge-Kantorovich map
for Gaussian optimal transport of dependence structure is also included.
Author: Alex J. Cannon [aut, cre]
Maintainer: Alex J. Cannon <alex.cannon@canada.ca>
Diff between MBC versions 0.10-7 dated 2024-11-12 and 0.10-8 dated 2026-06-16
DESCRIPTION | 21 ++++++++++++--------- MD5 | 16 +++++++++------- NAMESPACE | 3 ++- R/MRSmk.R |only README.md | 46 ++-------------------------------------------- inst/CITATION | 34 +++++++--------------------------- man/MBC-package.Rd | 18 +++++++++++++++--- man/MRSmk.Rd |only man/QDM.Rd | 2 +- man/R2D2.Rd | 2 +- 10 files changed, 49 insertions(+), 93 deletions(-)
Title: Tools for Reading and Writing ISO/OGC Geographic Metadata
Description: Provides facilities to read, write and validate geographic metadata
defined with ISO TC211 / OGC ISO geographic information metadata standards, and
encoded using the ISO 19139 and ISO 19115-3 (XML) standard technical specifications.
This includes ISO 19110 (Feature cataloguing), 19115 (dataset metadata), 19119 (service metadata)
and 19136 (GML). Other interoperable schemas from the OGC are progressively supported
as well, such as the Sensor Web Enablement (SWE) Common Data Model, the OGC GML
Coverage Implementation Schema (GMLCOV), or the OGC GML Referenceable Grid (GMLRGRID).
Author: Emmanuel Blondel [aut, cre] ,
R Consortium [fnd]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geometa versions 0.9.3 dated 2025-11-22 and 0.10.0 dated 2026-06-16
DESCRIPTION | 14 MD5 | 1012 ++++++++++++------------ NAMESPACE | 2 R/ISOAbstractAcquisitionInformation.R | 3 R/ISOAbstractApplicationSchemaInformation.R | 3 R/ISOAbstractCatalogue.R | 5 R/ISOAbstractCitation.R | 3 R/ISOAbstractConstraints.R | 3 R/ISOAbstractContentInformation.R | 3 R/ISOAbstractDataEvaluation.R | 3 R/ISOAbstractDataQuality.R | 3 R/ISOAbstractDistribution.R | 3 R/ISOAbstractExtent.R | 3 R/ISOAbstractFeatureCatalogue.R | 3 R/ISOAbstractFeatureType.R | 3 R/ISOAbstractFormat.R | 3 R/ISOAbstractGenericName.R | 3 R/ISOAbstractLineageInformation.R | 3 R/ISOAbstractMaintenanceInformation.R | 3 R/ISOAbstractMetadata.R | 3 R/ISOAbstractMetadataExtension.R | 3 R/ISOAbstractMetaquality.R | 12 R/ISOAbstractObject.R | 10 R/ISOAbstractOnlineResource.R | 3 R/ISOAbstractParameter.R | 3 R/ISOAbstractPlatform.R | 3 R/ISOAbstractPortrayalCatalogueInformation.R | 3 R/ISOAbstractPropertyType.R | 3 R/ISOAbstractQualityElement.R | 3 R/ISOAbstractReferenceSystem.R | 3 R/ISOAbstractResourceDescription.R | 3 R/ISOAbstractResponsibility.R | 3 R/ISOAbstractResult.R | 5 R/ISOAbstractSpatialRepresentation.R | 3 R/ISOAbstractSpatialResolution.R | 3 R/ISOAbstractStandardOrderProcess.R | 3 R/ISOAbstractTemporalQuality.R | 3 R/ISOAbstractTypedDate.R | 3 R/ISOAddress.R | 5 R/ISOAnchor.R | 5 R/ISOAngle.R | 5 R/ISOApplicationSchemaInformation.R | 5 R/ISOAssociatedResource.R | 3 R/ISOAssociationType.R | 5 R/ISOAttributeGroup.R | 3 R/ISOBand.R | 5 R/ISOBaseBoolean.R | 5 R/ISOBaseCharacterString.R | 5 R/ISOBaseDate.R | 5 R/ISOBaseDateTime.R | 5 R/ISOBaseDecimal.R | 5 R/ISOBaseInteger.R | 5 R/ISOBaseReal.R | 5 R/ISOBinary.R | 5 R/ISOBoundingPolygon.R | 5 R/ISOBrowseGraphic.R | 5 R/ISOCTCodelistValue.R | 6 R/ISOCellGeometry.R | 5 R/ISOCharacterSet.R | 5 R/ISOCitation.R | 5 R/ISOClassification.R | 5 R/ISOCodelist.R | 121 ++ R/ISOCodelistCatalogue.R | 5 R/ISOConformanceResult.R | 5 R/ISOConstraints.R | 5 R/ISOContact.R | 6 R/ISOContentInformation.R | 5 R/ISOCountry.R | 5 R/ISOCoupledResource.R | 5 R/ISOCouplingType.R | 5 R/ISOCoverageContentType.R | 12 R/ISOCoverageDescription.R | 5 R/ISODCPList.R | 5 R/ISODataIdentification.R | 5 R/ISODataIdentification19115_3.R | 3 R/ISODataIdentification19139.R | 3 R/ISODataQualityAbstractElement.R | 5 R/ISODataQualityCompleteness.R | 15 R/ISODataQualityLogicalConsistency.R | 25 R/ISODataQualityPositionalAccuracy.R | 20 R/ISODataQualityScope.R | 3 R/ISODataQualityTemporalAccuracy.R | 20 R/ISODataQualityThematicAccuracy.R | 23 R/ISODate.R | 5 R/ISODateType.R | 5 R/ISODescriptiveResult.R | 3 R/ISODigitalTransferOptions.R | 5 R/ISODimension.R | 5 R/ISODimensionNameType.R | 5 R/ISODistance.R | 5 R/ISODistribution.R | 5 R/ISODistributor.R | 5 R/ISOEvaluationMethod.R | 18 R/ISOEvaluationMethodType.R | 5 R/ISOExtent.R | 5 R/ISOFeatureCatalogueDescription.R | 5 R/ISOFeatureType.R | 5 R/ISOFeatureType19115_3.R | 2 R/ISOFeatureType19139.R | 3 R/ISOFeatureTypeInfo.R | 3 R/ISOFileName.R | 5 R/ISOFormat.R | 5 R/ISOFreeText.R | 5 R/ISOGeographicBoundingBox.R | 5 R/ISOGeographicDescription.R | 5 R/ISOGeographicExtent.R | 5 R/ISOGeometricObjectType.R | 5 R/ISOGeometricObjects.R | 5 R/ISOGeorectified.R | 5 R/ISOGeoreferenceable.R | 5 R/ISOGridSpatialRepresentation.R | 5 R/ISOIdentification.R | 5 R/ISOIdentification19115_3.R | 3 R/ISOIdentification19139.R | 3 R/ISOImageDescription.R | 5 R/ISOImageryAcquisitionInformation.R | 5 R/ISOImageryAlgorithm.R | 5 R/ISOImageryBand.R | 5 R/ISOImageryBandDefinition.R | 5 R/ISOImageryContext.R | 5 R/ISOImageryCoverageDescription.R | 5 R/ISOImageryCoverageResult.R | 5 R/ISOImageryEnvironmentalRecord.R | 5 R/ISOImageryEvent.R | 5 R/ISOImageryGCP.R | 5 R/ISOImageryGCPCollection.R | 5 R/ISOImageryGeolocationInformation.R | 5 R/ISOImageryGeometryType.R | 5 R/ISOImageryGeorectified.R | 5 R/ISOImageryGeoreferenceable.R | 5 R/ISOImageryImageDescription.R | 5 R/ISOImageryInstrument.R | 5 R/ISOImageryMetadata.R | 5 R/ISOImageryNominalResolution.R | 5 R/ISOImageryObjective.R | 5 R/ISOImageryObjectiveType.R | 5 R/ISOImageryOperation.R | 5 R/ISOImageryOperationType.R | 5 R/ISOImageryPlan.R | 5 R/ISOImageryPlatform.R | 5 R/ISOImageryPlatformPass.R | 5 R/ISOImageryPolarisationOrientation.R | 5 R/ISOImageryPriority.R | 5 R/ISOImageryProcessStep.R | 5 R/ISOImageryProcessStepReport.R | 5 R/ISOImageryProcessing.R | 5 R/ISOImageryRangeElementDescription.R | 5 R/ISOImageryRequestedDate.R | 5 R/ISOImageryRequirement.R | 5 R/ISOImageryRevision.R | 3 R/ISOImagerySensor.R | 3 R/ISOImagerySensorType.R | 5 R/ISOImagerySequence.R | 5 R/ISOImagerySource.R | 5 R/ISOImageryTransferFunctionType.R | 5 R/ISOImageryTrigger.R | 5 R/ISOImagingCondition.R | 5 R/ISOIndividual.R | 3 R/ISOInitiativeType.R | 5 R/ISOInstrumentationEvent.R | 3 R/ISOInstrumentationEventList.R | 3 R/ISOInstrumentationEventType.R | 4 R/ISOKeywordClass.R | 3 R/ISOKeywordType.R | 5 R/ISOKeywords.R | 5 R/ISOLanguage.R | 5 R/ISOLegalConstraints.R | 5 R/ISOLength.R | 5 R/ISOLineage.R | 5 R/ISOLocalName.R | 3 R/ISOLocale.R | 5 R/ISOLocaleContainer.R | 5 R/ISOLocalisedCharacterString.R | 5 R/ISOMDFeatureCatalogue.R | 3 R/ISOMaintenanceFrequency.R | 5 R/ISOMaintenanceInformation.R | 5 R/ISOMeasure.R | 5 R/ISOMeasureReference.R | 3 R/ISOMedium.R | 5 R/ISOMediumFormat.R | 5 R/ISOMemberName.R | 5 R/ISOMetaIdentifier.R | 5 R/ISOMetadata.R | 5 R/ISOMetadataScope.R | 4 R/ISOMimeFileType.R | 5 R/ISOMultiplicity.R | 5 R/ISOMultiplicityRange.R | 5 R/ISOOnLineFunction.R | 5 R/ISOOnlineResource.R | 5 R/ISOOperationChainMetadata.R | 5 R/ISOOperationMetadata.R | 5 R/ISOOrganisation.R | 3 R/ISOParameterDirection.R | 3 R/ISOPeriodDuration.R | 5 R/ISOPixelOrientation.R | 5 R/ISOPortrayalCatalogueReference.R | 5 R/ISOPresentationForm.R | 5 R/ISOProcessParameter.R | 3 R/ISOProcessStep.R | 5 R/ISOProgress.R | 5 R/ISOQualityResultFile.R | 3 R/ISOQuantitativeResult.R | 5 R/ISORangeDimension.R | 5 R/ISORecordType.R | 5 R/ISOReferenceSystem.R | 5 R/ISOReferenceSystemType.R | 3 R/ISOReleasability.R | 3 R/ISORepresentativeFraction.R | 5 R/ISOResolution.R | 5 R/ISOResponsibility.R | 3 R/ISORestriction.R | 5 R/ISORole.R | 5 R/ISOSRVParameter.R | 5 R/ISOSRVParameterDirection.R | 5 R/ISOSampleDimension.R | 3 R/ISOScale.R | 5 R/ISOScope.R | 3 R/ISOScopeCode.R | 5 R/ISOScopeDescription.R | 5 R/ISOScopedName.R | 5 R/ISOSecurityConstraints.R | 5 R/ISOSeries.R | 5 R/ISOServiceIdentification.R | 5 R/ISOSource.R | 5 R/ISOSpatialRepresentation.R | 5 R/ISOSpatialRepresentationType.R | 5 R/ISOSpatialTemporalExtent.R | 5 R/ISOStandaloneQualityReportInformation.R | 3 R/ISOStandardOrderProcess.R | 5 R/ISOTelephone.R | 5 R/ISOTelephoneType.R | 4 R/ISOTemporalExtent.R | 5 R/ISOTopicCategory.R | 5 R/ISOTopologyLevel.R | 5 R/ISOTypeName.R | 5 R/ISOURI.R | 3 R/ISOUnlimitedInteger.R | 5 R/ISOUomIdentifier.R | 3 R/ISOUsabilityElement.R | 5 R/ISOUsage.R | 5 R/ISOVectorSpatialRepresentation.R | 5 R/ISOVerticalExtent.R | 5 R/data_codelists.R |only README.md | 2 data |only man/ISOAbsoluteExternalPositionalAccuracy.Rd | 7 man/ISOAbstractAcquisitionInformation.Rd | 3 man/ISOAbstractApplicationSchemaInformation.Rd | 3 man/ISOAbstractCatalogue.Rd | 5 man/ISOAbstractCitation.Rd | 3 man/ISOAbstractCompleteness.Rd | 5 man/ISOAbstractConstraints.Rd | 3 man/ISOAbstractContentInformation.Rd | 3 man/ISOAbstractDataEvaluation.Rd | 3 man/ISOAbstractDataQuality.Rd | 3 man/ISOAbstractDistribution.Rd | 3 man/ISOAbstractExtent.Rd | 3 man/ISOAbstractFeatureCatalogue.Rd | 3 man/ISOAbstractFeatureType.Rd | 3 man/ISOAbstractFormat.Rd | 3 man/ISOAbstractGenericName.Rd | 3 man/ISOAbstractLineageInformation.Rd | 3 man/ISOAbstractLogicalConsistency.Rd | 5 man/ISOAbstractMDContentInformation.Rd | 5 man/ISOAbstractMaintenanceInformation.Rd | 3 man/ISOAbstractMetadata.Rd | 3 man/ISOAbstractMetadataExtension.Rd | 3 man/ISOAbstractMetaquality.Rd | 3 man/ISOAbstractOnlineResource.Rd | 3 man/ISOAbstractParameter.Rd | 3 man/ISOAbstractPlatform.Rd | 3 man/ISOAbstractPortrayalCatalogueInformation.Rd | 3 man/ISOAbstractPositionalAccuracy.Rd | 5 man/ISOAbstractPropertyType.Rd | 3 man/ISOAbstractQualityElement.Rd | 3 man/ISOAbstractReferenceSystem.Rd | 3 man/ISOAbstractResourceDescription.Rd | 3 man/ISOAbstractResponsibility.Rd | 3 man/ISOAbstractResult.Rd | 5 man/ISOAbstractSpatialRepresentation.Rd | 3 man/ISOAbstractSpatialResolution.Rd | 3 man/ISOAbstractStandardOrderProcess.Rd | 3 man/ISOAbstractTemporalAccuracy.Rd | 5 man/ISOAbstractTemporalQuality.Rd | 3 man/ISOAbstractThematicAccuracy.Rd | 5 man/ISOAbstractTypedDate.Rd | 3 man/ISOAccuracyOfATimeMeasurement.Rd | 7 man/ISOAddress.Rd | 7 man/ISOAggregationDerivation.Rd | 3 man/ISOAnchor.Rd | 5 man/ISOAngle.Rd | 5 man/ISOApplicationSchemaInformation.Rd | 5 man/ISOAssociatedResource.Rd | 3 man/ISOAssociationType.Rd | 7 man/ISOAttributeGroup.Rd | 3 man/ISOBand.Rd | 5 man/ISOBaseBoolean.Rd | 5 man/ISOBaseCharacterString.Rd | 5 man/ISOBaseDate.Rd | 5 man/ISOBaseDateTime.Rd | 5 man/ISOBaseDecimal.Rd | 5 man/ISOBaseInteger.Rd | 5 man/ISOBaseReal.Rd | 5 man/ISOBinary.Rd | 7 man/ISOBoundingPolygon.Rd | 5 man/ISOBrowseGraphic.Rd | 5 man/ISOCTCodelistValue.Rd | 6 man/ISOCellGeometry.Rd | 7 man/ISOCharacterSet.Rd | 5 man/ISOCitation.Rd | 7 man/ISOClassification.Rd | 7 man/ISOCodelist.Rd | 18 man/ISOCodelistCatalogue.Rd | 5 man/ISOCompletenessCommission.Rd | 7 man/ISOCompletenessOmission.Rd | 7 man/ISOConceptualConsistency.Rd | 7 man/ISOConfidence.Rd | 3 man/ISOConformanceResult.Rd | 5 man/ISOConstraints.Rd | 5 man/ISOContact.Rd | 8 man/ISOCountry.Rd | 5 man/ISOCoupledResource.Rd | 5 man/ISOCouplingType.Rd | 5 man/ISOCoverageContentType.Rd | 14 man/ISOCoverageDescription.Rd | 7 man/ISODCPList.Rd | 7 man/ISODataIdentification.Rd | 5 man/ISODataIdentification19115_3.Rd | 3 man/ISODataIdentification19139.Rd | 5 man/ISODataInspection.Rd | 3 man/ISODataQualityAbstractElement.Rd | 5 man/ISODataQualityScope.Rd | 5 man/ISODate.Rd | 5 man/ISODateType.Rd | 7 man/ISODescriptiveResult.Rd | 3 man/ISODigitalTransferOptions.Rd | 7 man/ISODimension.Rd | 7 man/ISODimensionNameType.Rd | 7 man/ISODistance.Rd | 5 man/ISODistribution.Rd | 7 man/ISODistributor.Rd | 7 man/ISODomainConsistency.Rd | 7 man/ISOEvaluationMethod.Rd | 3 man/ISOEvaluationMethodType.Rd | 7 man/ISOExtent.Rd | 5 man/ISOFeatureCatalogueDescription.Rd | 7 man/ISOFeatureType.Rd | 7 man/ISOFeatureType19115_3.Rd | 4 man/ISOFeatureType19139.Rd | 5 man/ISOFeatureTypeInfo.Rd | 3 man/ISOFileName.Rd | 5 man/ISOFormat.Rd | 7 man/ISOFormatConsistency.Rd | 7 man/ISOFreeText.Rd | 7 man/ISOFullInspection.Rd | 3 man/ISOGeographicBoundingBox.Rd | 5 man/ISOGeographicDescription.Rd | 5 man/ISOGeographicExtent.Rd | 5 man/ISOGeometricObjectType.Rd | 5 man/ISOGeometricObjects.Rd | 5 man/ISOGeorectified.Rd | 5 man/ISOGeoreferenceable.Rd | 5 man/ISOGridSpatialRepresentation.Rd | 5 man/ISOGriddedDataPositionalAccuracy.Rd | 7 man/ISOHomogeneity.Rd | 3 man/ISOIdentification.Rd | 5 man/ISOIdentification19115_3.Rd | 3 man/ISOIdentification19139.Rd | 3 man/ISOImageDescription.Rd | 7 man/ISOImageryAbstractGeolocationInformation.Rd | 5 man/ISOImageryAcquisitionInformation.Rd | 5 man/ISOImageryAlgorithm.Rd | 5 man/ISOImageryBand.Rd | 5 man/ISOImageryBandDefinition.Rd | 5 man/ISOImageryContext.Rd | 5 man/ISOImageryCoverageDescription.Rd | 5 man/ISOImageryCoverageResult.Rd | 5 man/ISOImageryEnvironmentalRecord.Rd | 5 man/ISOImageryEvent.Rd | 5 man/ISOImageryGCP.Rd | 5 man/ISOImageryGCPCollection.Rd | 5 man/ISOImageryGeometryType.Rd | 5 man/ISOImageryGeorectified.Rd | 5 man/ISOImageryGeoreferenceable.Rd | 5 man/ISOImageryImageDescription.Rd | 5 man/ISOImageryInstrument.Rd | 5 man/ISOImageryMetadata.Rd | 5 man/ISOImageryNominalResolution.Rd | 5 man/ISOImageryObjective.Rd | 5 man/ISOImageryObjectiveType.Rd | 5 man/ISOImageryOperation.Rd | 5 man/ISOImageryOperationType.Rd | 5 man/ISOImageryPlan.Rd | 5 man/ISOImageryPlatform.Rd | 5 man/ISOImageryPlatformPass.Rd | 5 man/ISOImageryPolarisationOrientation.Rd | 5 man/ISOImageryPriority.Rd | 5 man/ISOImageryProcessStep.Rd | 5 man/ISOImageryProcessStepReport.Rd | 5 man/ISOImageryProcessing.Rd | 5 man/ISOImageryRangeElementDescription.Rd | 5 man/ISOImageryRequestedDate.Rd | 7 man/ISOImageryRequirement.Rd | 5 man/ISOImageryRevision.Rd | 3 man/ISOImagerySensor.Rd | 3 man/ISOImagerySensorType.Rd | 5 man/ISOImagerySequence.Rd | 5 man/ISOImagerySource.Rd | 5 man/ISOImageryTransferFunctionType.Rd | 5 man/ISOImageryTrigger.Rd | 5 man/ISOImagingCondition.Rd | 5 man/ISOIndirectEvaluation.Rd | 3 man/ISOIndividual.Rd | 3 man/ISOInitiativeType.Rd | 7 man/ISOInstrumentationEvent.Rd | 3 man/ISOInstrumentationEventList.Rd | 3 man/ISOInstrumentationEventType.Rd | 6 man/ISOKeywordClass.Rd | 3 man/ISOKeywordType.Rd | 7 man/ISOKeywords.Rd | 7 man/ISOLanguage.Rd | 7 man/ISOLegalConstraints.Rd | 7 man/ISOLength.Rd | 5 man/ISOLineage.Rd | 7 man/ISOLocalName.Rd | 3 man/ISOLocale.Rd | 7 man/ISOLocaleContainer.Rd | 5 man/ISOLocalisedCharacterString.Rd | 5 man/ISOMDFeatureCatalogue.Rd | 3 man/ISOMaintenanceFrequency.Rd | 7 man/ISOMaintenanceInformation.Rd | 7 man/ISOMeasure.Rd | 5 man/ISOMeasureReference.Rd | 3 man/ISOMedium.Rd | 7 man/ISOMediumFormat.Rd | 5 man/ISOMemberName.Rd | 5 man/ISOMetaIdentifier.Rd | 7 man/ISOMetadata.Rd | 5 man/ISOMetadataScope.Rd | 6 man/ISOMimeFileType.Rd | 5 man/ISOMultiplicity.Rd | 5 man/ISOMultiplicityRange.Rd | 5 man/ISONonQuantitativeAttributeAccuracy.Rd | 7 man/ISONonQuantitativeAttributeCorrectness.Rd | 3 man/ISOOnLineFunction.Rd | 7 man/ISOOnlineResource.Rd | 7 man/ISOOperationChainMetadata.Rd | 5 man/ISOOperationMetadata.Rd | 5 man/ISOOrganisation.Rd | 3 man/ISOParameterDirection.Rd | 3 man/ISOPeriodDuration.Rd | 5 man/ISOPixelOrientation.Rd | 5 man/ISOPortrayalCatalogueReference.Rd | 7 man/ISOPresentationForm.Rd | 7 man/ISOProcessParameter.Rd | 3 man/ISOProcessStep.Rd | 7 man/ISOQualityResultFile.Rd | 3 man/ISOQuantitativeAttributeAccuracy.Rd | 7 man/ISOQuantitativeResult.Rd | 7 man/ISORangeDimension.Rd | 7 man/ISORecordType.Rd | 5 man/ISOReferenceSystem.Rd | 7 man/ISOReferenceSystemType.Rd | 5 man/ISORelativeInternalPositionalAccuracy.Rd | 7 man/ISOReleasability.Rd | 3 man/ISORepresentativeFraction.Rd | 7 man/ISORepresentativity.Rd | 3 man/ISOResolution.Rd | 5 man/ISOResponsibility.Rd | 3 man/ISORestriction.Rd | 7 man/ISORole.Rd | 7 man/ISOSRVParameter.Rd | 4 man/ISOSRVParameterDirection.Rd | 5 man/ISOSRVServiceIdentification.Rd | 6 man/ISOSampleBasedInspection.Rd | 3 man/ISOSampleDimension.Rd | 3 man/ISOScale.Rd | 5 man/ISOScope.Rd | 3 man/ISOScopeCode.Rd | 5 man/ISOScopeDescription.Rd | 5 man/ISOScopedName.Rd | 5 man/ISOSecurityConstraints.Rd | 7 man/ISOSeries.Rd | 5 man/ISOSource.Rd | 7 man/ISOSpatialRepresentation.Rd | 5 man/ISOSpatialRepresentationType.Rd | 5 man/ISOSpatialTemporalExtent.Rd | 7 man/ISOStandaloneQualityReportInformation.Rd | 3 man/ISOStandardOrderProcess.Rd | 5 man/ISOStatus.Rd | 5 man/ISOTelephone.Rd | 7 man/ISOTelephoneType.Rd | 6 man/ISOTemporalConsistency.Rd | 7 man/ISOTemporalExtent.Rd | 5 man/ISOTemporalValidity.Rd | 7 man/ISOThematicClassificationCorrectness.Rd | 7 man/ISOTopicCategory.Rd | 7 man/ISOTopologicalConsistency.Rd | 7 man/ISOTopologyLevel.Rd | 7 man/ISOTypeName.Rd | 5 man/ISOURI.Rd | 3 man/ISOUnlimitedInteger.Rd | 5 man/ISOUomIdentifier.Rd | 3 man/ISOUsabilityElement.Rd | 5 man/ISOUsage.Rd | 5 man/ISOVectorSpatialRepresentation.Rd | 7 man/ISOVerticalExtent.Rd | 7 man/codelists.Rd |only man/parseISOCodelists.Rd |only 509 files changed, 716 insertions(+), 2939 deletions(-)
Title: Connect to an OMOP Common Data Model
Description: Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.
Author: Ger Inberg [aut, cre] ,
Adam Black [aut] ,
Artem Gorbachev [aut],
Edward Burn [aut],
Marti Catala Sabate [aut],
Ioanna Nika [aut]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between CDMConnector versions 2.5.1 dated 2026-04-03 and 2.6.0 dated 2026-06-16
CDMConnector-2.5.1/CDMConnector/tests/testthat/_problems |only CDMConnector-2.5.1/CDMConnector/tests/testthat/testthat-problems.rds |only CDMConnector-2.6.0/CDMConnector/DESCRIPTION | 17 CDMConnector-2.6.0/CDMConnector/MD5 | 35 - CDMConnector-2.6.0/CDMConnector/NAMESPACE | 6 CDMConnector-2.6.0/CDMConnector/NEWS.md | 8 CDMConnector-2.6.0/CDMConnector/R/cdm.R | 126 +++- CDMConnector-2.6.0/CDMConnector/R/cohdSimilarConcepts.R | 12 CDMConnector-2.6.0/CDMConnector/R/dbSource.R | 62 ++ CDMConnector-2.6.0/CDMConnector/R/utils.R | 74 +- CDMConnector-2.6.0/CDMConnector/build/partial.rdb |binary CDMConnector-2.6.0/CDMConnector/build/vignette.rds |binary CDMConnector-2.6.0/CDMConnector/inst/doc/a01_getting-started.html | 72 +- CDMConnector-2.6.0/CDMConnector/inst/doc/a02_cohorts.R | 294 +++++----- CDMConnector-2.6.0/CDMConnector/inst/doc/a02_cohorts.html | 249 +------- CDMConnector-2.6.0/CDMConnector/inst/doc/a03_dbplyr.html | 4 CDMConnector-2.6.0/CDMConnector/inst/doc/a06_using_cdm_attributes.html | 4 CDMConnector-2.6.0/CDMConnector/man/cdmFromCon.Rd | 4 CDMConnector-2.6.0/CDMConnector/man/insertTableSpark.Rd |only CDMConnector-2.6.0/CDMConnector/tests/testthat/test-02-db-cdm.R | 33 + 20 files changed, 512 insertions(+), 488 deletions(-)
Title: Spatial Concentration and Radius-Based Risk Calculations
Description: Provides methods for spatial concentration and radius-based risk
calculations. The package focuses on efficient determination of the sum of
observations within a given radius, identifying areas of high local
concentration, and aggregating point data to polygon geometries. These
methods are useful for applications such as insurance, urban analytics,
environmental exposure analysis, and other spatial point pattern workflows.
The underlying maximum covering problem is described by Church (1974)
<doi:10.1007/BF01942293>.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between spatialrisk versions 0.8.0 dated 2026-05-04 and 0.8.1 dated 2026-06-16
spatialrisk-0.8.0/spatialrisk/man/spatialrisk-deprecated.Rd |only spatialrisk-0.8.1/spatialrisk/DESCRIPTION | 14 spatialrisk-0.8.1/spatialrisk/MD5 | 50 +- spatialrisk-0.8.1/spatialrisk/NAMESPACE | 7 spatialrisk-0.8.1/spatialrisk/NEWS.md | 18 spatialrisk-0.8.1/spatialrisk/R/concentration_hotspot_pair_refine.R | 154 +++++-- spatialrisk-0.8.1/spatialrisk/R/deprecated-aliases.R | 93 +++- spatialrisk-0.8.1/spatialrisk/R/highest_concentration_terra.R | 86 ++-- spatialrisk-0.8.1/spatialrisk/R/hotspot-workflow.R |only spatialrisk-0.8.1/spatialrisk/build/vignette.rds |binary spatialrisk-0.8.1/spatialrisk/inst/doc/fixed-radius-concentration.R | 8 spatialrisk-0.8.1/spatialrisk/inst/doc/fixed-radius-concentration.Rmd | 72 +++ spatialrisk-0.8.1/spatialrisk/inst/doc/fixed-radius-concentration.html | 193 ++++++---- spatialrisk-0.8.1/spatialrisk/inst/doc/visualisation.html | 2 spatialrisk-0.8.1/spatialrisk/man/choropleth_ggplot2.Rd | 1 spatialrisk-0.8.1/spatialrisk/man/concentration.Rd |only spatialrisk-0.8.1/spatialrisk/man/concentration_hotspot.Rd | 23 + spatialrisk-0.8.1/spatialrisk/man/find_highest_concentration.Rd |only spatialrisk-0.8.1/spatialrisk/man/interpolate_spline.Rd | 1 spatialrisk-0.8.1/spatialrisk/man/map_points.Rd | 24 - spatialrisk-0.8.1/spatialrisk/man/plot_points.Rd |only spatialrisk-0.8.1/spatialrisk/man/points_in_circle.Rd |only spatialrisk-0.8.1/spatialrisk/man/points_to_polygon.Rd |only spatialrisk-0.8.1/spatialrisk/man/points_within_radius.Rd | 19 spatialrisk-0.8.1/spatialrisk/man/prepare_spatialrisk.Rd |only spatialrisk-0.8.1/spatialrisk/man/radius_sum.Rd | 49 -- spatialrisk-0.8.1/spatialrisk/man/summarise_points_by_polygon.Rd | 26 - spatialrisk-0.8.1/spatialrisk/tests/testthat/test-concentration-hotspot-pair-refine.R | 15 spatialrisk-0.8.1/spatialrisk/tests/testthat/test_concentration_hotspot.R | 105 +++++ spatialrisk-0.8.1/spatialrisk/vignettes/fixed-radius-concentration.Rmd | 72 +++ 30 files changed, 715 insertions(+), 317 deletions(-)
Title: Analyzing Multiple Omics Data with an Offset Approach
Description: Fits successive Lasso models for several blocks of (omics) data with different priorities and takes the predicted values as an offset for the next block. Also offers options to deal with block-wise missingness in multi-omics data.
Author: Simon Klau [aut],
Roman Hornung [aut, cre],
Alina Bauer [aut],
Jonas Hagenberg [aut]
Maintainer: Roman Hornung <hornung@ibe.med.uni-muenchen.de>
Diff between prioritylasso versions 0.3.1 dated 2023-04-10 and 0.4.0 dated 2026-06-16
DESCRIPTION | 29 +++++++-- MD5 | 22 +++---- NEWS | 8 ++ R/predict.prioritylasso.R | 6 +- R/prioritylasso.R | 83 ++++++++++++++++++++-------- build/vignette.rds |binary inst/doc/explanation_blockwise_missing.R | 8 +- inst/doc/explanation_blockwise_missing.html | 6 +- inst/doc/prioritylasso_vignette.R | 4 - inst/doc/prioritylasso_vignette.html | 66 +++++++++++----------- man/pl_data.Rd | 2 man/prioritylasso.Rd | 8 ++ 12 files changed, 159 insertions(+), 83 deletions(-)
Title: Dynamic Structural Equation Models
Description: Applies dynamic structural equation models to time-series data
with generic and simplified specification for simultaneous and lagged
effects. Methods are described in Thorson et al. (2024)
"Dynamic structural equation models synthesize ecosystem dynamics
constrained by ecological mechanisms."
Author: James Thorson [aut, cre] ,
Maurice Goodman [ctb] ,
Wouter van der Bijl [ctb] ,
Giovanni M. Marchetti [ctr]
Maintainer: James Thorson <James.Thorson@noaa.gov>
Diff between dsem versions 2.0.1 dated 2026-05-14 and 3.0.0 dated 2026-06-16
DESCRIPTION | 10 - MD5 | 71 ++++++---- NAMESPACE | 13 + NEWS.md | 11 + R/dsem.R | 166 ++++++++++++++++++++----- R/family.R |only R/make_dsem_ram.R | 32 +++- R/make_msv.R |only R/utility.R | 12 - README.md | 10 - build/vignette.rds |binary inst/doc/MGARCH.R |only inst/doc/MGARCH.Rmd |only inst/doc/MGARCH.html |only inst/doc/features.R | 4 inst/doc/features.Rmd | 6 inst/doc/features.html | 12 - inst/doc/model-description.R | 5 inst/doc/model-description.Rmd | 11 - inst/doc/model-description.html | 13 - inst/doc/nonlinear.Rmd | 2 inst/doc/nonlinear.html | 4 inst/doc/random_slopes.html | 2 man/dsem.Rd | 34 +++-- man/dsemRTMB.Rd | 22 ++- man/dsem_control.Rd | 7 - man/fixed.Rd |only man/gaussian_fixed_sd.Rd |only man/lognormal.Rd |only man/loo_residuals.Rd | 8 - man/make_msv.Rd |only man/tweedie.Rd |only src/dsem.cpp | 123 +++++++++++++++--- tests/testthat/test-distributions.R | 36 ++++- tests/testthat/test-gmrf-versions.R | 35 ++--- tests/testthat/test-platform.R | 98 ++++++++++---- tests/testthat/test-priors.R | 16 +- vignettes/MGARCH.Rmd |only vignettes/features.Rmd | 6 vignettes/model-description.Rmd | 11 - vignettes/nonlinear.Rmd | 2 vignettes/web_only/dynamic_factor_analysis.Rmd | 16 +- 42 files changed, 554 insertions(+), 244 deletions(-)
Title: Hierarchical Piecewise Regression with Smoothed Change-Points
Description: Fits Bayesian hierarchical piecewise regression models with
multiple logistic-smoothed change-points. Non-linear parameters (change-point
locations and transition sharpness) and linear parameters can each be
conditioned on covariates and factors via flexible design matrices.
A random-intercept structure is supported for any parameter. Spike-and-slab
regularization is supported for selecting the number of breakpoints.
Posterior inference uses a Metropolis-within-Gibbs sampler implemented
in 'Rust' for speed. Methods are based on the smooth transition
piecewise regression model of Bacon and Watts (1971) <doi:10.2307/2334389>
and variable selection spike-and-slab priors of Kuo and Mallick (1998)
<https://www.jstor.org/stable/25053023>.
Author: Aidan D Bindoff [aut, cre]
Maintainer: Aidan D Bindoff <aidan.bindoff@utas.edu.au>
Diff between smoothbp versions 0.2.4 dated 2026-06-14 and 0.2.7 dated 2026-06-16
DESCRIPTION | 8 ++++---- MD5 | 14 ++++++++------ NAMESPACE | 3 +++ NEWS.md | 22 ++++++++++++++++++++++ R/derivative.R |only man/derivative.Rd |only src/Makevars.in | 5 +---- src/Makevars.win.in | 7 +------ src/rust/Cargo.toml | 3 +-- 9 files changed, 40 insertions(+), 22 deletions(-)
Title: Fast Change Point Detection via Sequential Gradient Descent
Description: Implements fast change point detection algorithm based on the
paper "Sequential Gradient Descent and Quasi-Newton's Method for
Change-Point Analysis" by Xianyang Zhang, Trisha Dawn
<https://proceedings.mlr.press/v206/zhang23b.html>. The algorithm is
based on dynamic programming with pruning and sequential gradient
descent. See Li and Zhang (2026) <doi:10.18637/jss.v116.i06> for details.
Author: Xingchi Li [aut, cre, cph] ,
Xianyang Zhang [aut, cph]
Maintainer: Xingchi Li <anthony.li.stat.tamu.edu@lixingchi.com>
Diff between fastcpd versions 0.16.2 dated 2025-04-25 and 1.0.0 dated 2026-06-16
fastcpd-0.16.2/fastcpd/inst/include |only fastcpd-0.16.2/fastcpd/src/fastcpd_classes.cc |only fastcpd-0.16.2/fastcpd/src/fastcpd_test.cc |only fastcpd-0.16.2/fastcpd/src/ref_fastglm_fit_glm.cc |only fastcpd-0.16.2/fastcpd/src/ref_fastglm_fit_glm_dense.cc |only fastcpd-0.16.2/fastcpd/src/ref_r_family.c |only fastcpd-0.16.2/fastcpd/src/ref_tseries.cc |only fastcpd-0.16.2/fastcpd/src/ref_tseries_cfuncs.f90 |only fastcpd-0.16.2/fastcpd/src/ref_tseries_dsumsl.f |only fastcpd-0.16.2/fastcpd/src/ref_tseries_formats.c |only fastcpd-0.16.2/fastcpd/src/ref_tseries_garch.c |only fastcpd-0.16.2/fastcpd/src/test-fastcpd.cc |only fastcpd-1.0.0/fastcpd/DESCRIPTION | 26 fastcpd-1.0.0/fastcpd/MD5 | 162 +++--- fastcpd-1.0.0/fastcpd/NAMESPACE | 2 fastcpd-1.0.0/fastcpd/NEWS.md | 44 + fastcpd-1.0.0/fastcpd/R/fastcpd.R | 85 +++ fastcpd-1.0.0/fastcpd/R/utilities.R | 42 + fastcpd-1.0.0/fastcpd/README.md | 233 ++------ fastcpd-1.0.0/fastcpd/build/partial.rdb |only fastcpd-1.0.0/fastcpd/build/vignette.rds |binary fastcpd-1.0.0/fastcpd/configure |only fastcpd-1.0.0/fastcpd/configure.win |only fastcpd-1.0.0/fastcpd/inst/CITATION | 17 fastcpd-1.0.0/fastcpd/inst/doc/comparison-packages.html | 38 - fastcpd-1.0.0/fastcpd/inst/doc/comparison-pelt.html | 2 fastcpd-1.0.0/fastcpd/inst/doc/examples-advanced.html | 2 fastcpd-1.0.0/fastcpd/inst/doc/examples-custom-model.Rmd | 100 +++ fastcpd-1.0.0/fastcpd/inst/doc/examples-custom-model.html | 172 ++++-- fastcpd-1.0.0/fastcpd/inst/doc/exploration-during-development.html | 2 fastcpd-1.0.0/fastcpd/inst/doc/time-complexity.html | 4 fastcpd-1.0.0/fastcpd/man/fastcpd.Rd | 109 +++- fastcpd-1.0.0/fastcpd/man/fastcpd_ar.Rd | 2 fastcpd-1.0.0/fastcpd/man/fastcpd_arima.Rd | 2 fastcpd-1.0.0/fastcpd/man/fastcpd_arma.Rd | 2 fastcpd-1.0.0/fastcpd/man/fastcpd_binomial.Rd | 2 fastcpd-1.0.0/fastcpd/man/fastcpd_exponential.Rd |only fastcpd-1.0.0/fastcpd/man/fastcpd_garch.Rd | 40 + fastcpd-1.0.0/fastcpd/man/fastcpd_lasso.Rd | 2 fastcpd-1.0.0/fastcpd/man/fastcpd_lm.Rd | 2 fastcpd-1.0.0/fastcpd/man/fastcpd_mean.Rd | 2 fastcpd-1.0.0/fastcpd/man/fastcpd_meanvariance.Rd | 2 fastcpd-1.0.0/fastcpd/man/fastcpd_poisson.Rd | 2 fastcpd-1.0.0/fastcpd/man/fastcpd_ts.Rd | 2 fastcpd-1.0.0/fastcpd/man/fastcpd_var.Rd | 2 fastcpd-1.0.0/fastcpd/man/fastcpd_variance.Rd | 2 fastcpd-1.0.0/fastcpd/man/figures/README-ar3-1.png |binary fastcpd-1.0.0/fastcpd/man/figures/README-time-comparison-large-1.png |binary fastcpd-1.0.0/fastcpd/man/figures/README-time-comparison-small-1.png |binary fastcpd-1.0.0/fastcpd/man/figures/logo.png |only fastcpd-1.0.0/fastcpd/man/plot.Rd | 6 fastcpd-1.0.0/fastcpd/man/print.Rd | 8 fastcpd-1.0.0/fastcpd/man/show.Rd | 8 fastcpd-1.0.0/fastcpd/man/summary.Rd | 8 fastcpd-1.0.0/fastcpd/src/Makevars | 2 fastcpd-1.0.0/fastcpd/src/Makevars.win | 2 fastcpd-1.0.0/fastcpd/src/RcppExports.cpp | 54 -- fastcpd-1.0.0/fastcpd/src/codegen |only fastcpd-1.0.0/fastcpd/src/families |only fastcpd-1.0.0/fastcpd/src/fastcpd_arma.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_binomial.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_custom.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_exponential.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_family.h |only fastcpd-1.0.0/fastcpd/src/fastcpd_garch.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_garch.h |only fastcpd-1.0.0/fastcpd/src/fastcpd_gaussian.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_glm.h |only fastcpd-1.0.0/fastcpd/src/fastcpd_impl.cc | 268 +++++----- fastcpd-1.0.0/fastcpd/src/fastcpd_impl.h |only fastcpd-1.0.0/fastcpd/src/fastcpd_lasso.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_ma.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_mean.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_mean_1d.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_meanvariance.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_meanvariance_1d.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_mgaussian.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_optim.h |only fastcpd-1.0.0/fastcpd/src/fastcpd_poisson.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_template.h |only fastcpd-1.0.0/fastcpd/src/fastcpd_variance.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_variance_1d.cc |only fastcpd-1.0.0/fastcpd/src/fastcpd_xptr.h |only fastcpd-1.0.0/fastcpd/tests/__pycache__ |only fastcpd-1.0.0/fastcpd/tests/testthat/examples/fastcpd_custom_xptr.txt |only fastcpd-1.0.0/fastcpd/tests/testthat/examples/fastcpd_exponential_1.R |only fastcpd-1.0.0/fastcpd/tests/testthat/examples/fastcpd_garch_2.txt |only fastcpd-1.0.0/fastcpd/tests/testthat/examples/fastcpd_garch_3.txt |only fastcpd-1.0.0/fastcpd/tests/testthat/test-check.R | 3 fastcpd-1.0.0/fastcpd/tests/testthat/test-examples-fastcpd_4.R | 2 fastcpd-1.0.0/fastcpd/tests/testthat/test-examples-fastcpd_custom_xptr.R |only fastcpd-1.0.0/fastcpd/tests/testthat/test-examples-fastcpd_exponential_1.R |only fastcpd-1.0.0/fastcpd/tests/testthat/test-examples-fastcpd_garch.R | 8 fastcpd-1.0.0/fastcpd/tests/testthat/test-examples-fastcpd_garch_2.R |only fastcpd-1.0.0/fastcpd/tests/testthat/test-examples-fastcpd_garch_3.R |only fastcpd-1.0.0/fastcpd/tests/testthat/test-fastcpd-custom-xptr.R |only fastcpd-1.0.0/fastcpd/tests/testthat/test-fastcpd-glm-irls.R |only fastcpd-1.0.0/fastcpd/tests/testthat/test-pvalue-distribution.R |only fastcpd-1.0.0/fastcpd/tools |only fastcpd-1.0.0/fastcpd/vignettes/examples-custom-model.Rmd | 100 +++ 100 files changed, 1055 insertions(+), 518 deletions(-)
Title: 'C++' Implementations of Functional Enrichment Analysis
Description: Fast implementations of functional enrichment analysis methods using 'C++' via 'Rcpp'.
Currently provides Over-Representation Analysis (ORA) and Gene Set Enrichment Analysis (GSEA).
The multilevel GSEA algorithm is derived from the 'fgsea' package.
Methods are described in Subramanian et al. (2005) <doi:10.1073/pnas.0506580102> and Korotkevich et al. (2021) <doi:10.1101/060012>.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between enrichit versions 0.1.4 dated 2026-04-08 and 0.1.5 dated 2026-06-16
DESCRIPTION | 8 - MD5 | 20 ++-- NAMESPACE | 2 NEWS.md | 14 ++- R/bayes_enrich.R |only R/gsea.R | 152 ++++++++++++++++++------------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/enrichit.html | 18 ++-- man/bayes_enrich.Rd |only man/bayes_summary.Rd |only man/enrichit-package.Rd | 5 + tests/testthat/test-bayes-enrich.R |only 13 files changed, 119 insertions(+), 100 deletions(-)
Title: Numeric Matrices K-NN and PCA Imputation
Description: Fast k-nearest neighbors (K-NN) and principal component
analysis (PCA) imputation algorithms for missing values in epigenetic
data or other high-dimensional numeric matrices. For PCA, a locally
optimal block preconditioned conjugate gradient (LOBPCG) eigensolver
with warm starts of both the eigenblock and search direction is also
supported. Two complementary imputation strategies are available.
Group-wise imputation (e.g., by chromosome) is recommended for
Illumina DNA methylation microarrays (e.g., 450K, EPIC) and other
matrices with groupable columns. A sliding window approach for K-NN or
PCA imputation is recommended only for whole-genome methylation data
such as whole-genome bisulfite sequencing (WGBS) or Enzymatic
Methyl-seq (EM-seq). The package also supports hyperparameter tuning
via repeated cross-validation. The K-NN algorithm is described in:
Hastie, T., Tibshirani, R., Sherlock, G., Eisen, M., Brown, P. and
Botstein, D. (1999) "Imputing Missing Data for Gene Expression
Arra [...truncated...]
Author: Hung Pham [aut, cre, cph] ,
Posit Software, PBC [cph]
Maintainer: Hung Pham <amser.hoanghung@gmail.com>
Diff between slideimp versions 1.1.0 dated 2026-05-01 and 1.2.0 dated 2026-06-16
slideimp-1.1.0/slideimp/src/impute_knn_mlpack.cpp |only slideimp-1.2.0/slideimp/DESCRIPTION | 54 +- slideimp-1.2.0/slideimp/MD5 | 87 ++- slideimp-1.2.0/slideimp/NEWS.md | 26 + slideimp-1.2.0/slideimp/R/RcppExports.R | 8 slideimp-1.2.0/slideimp/R/col_vars.R | 26 - slideimp-1.2.0/slideimp/R/crate.R |only slideimp-1.2.0/slideimp/R/group_imp.R | 193 +++++--- slideimp-1.2.0/slideimp/R/knn_imp.R | 89 +--- slideimp-1.2.0/slideimp/R/mat_miss.R | 7 slideimp-1.2.0/slideimp/R/mean_imp_col.R | 6 slideimp-1.2.0/slideimp/R/pca_imp.R | 157 ++++--- slideimp-1.2.0/slideimp/R/print.R | 57 +- slideimp-1.2.0/slideimp/R/sim_mat.R | 3 slideimp-1.2.0/slideimp/R/slide_imp.R | 172 +++++-- slideimp-1.2.0/slideimp/R/tune_imp.R | 356 ++++++++-------- slideimp-1.2.0/slideimp/R/utils.R | 51 +- slideimp-1.2.0/slideimp/README.md | 168 +++---- slideimp-1.2.0/slideimp/inst/CITATION |only slideimp-1.2.0/slideimp/inst/LICENSE.note |only slideimp-1.2.0/slideimp/man/col_vars.Rd | 19 slideimp-1.2.0/slideimp/man/group_imp.Rd | 95 +--- slideimp-1.2.0/slideimp/man/knn_imp.Rd | 23 - slideimp-1.2.0/slideimp/man/pca_imp.Rd | 110 ++-- slideimp-1.2.0/slideimp/man/slide_imp.Rd | 94 ++-- slideimp-1.2.0/slideimp/man/slideimp-package.Rd | 10 slideimp-1.2.0/slideimp/man/slideimp_resolve_group.Rd | 3 slideimp-1.2.0/slideimp/man/tune_imp.Rd | 71 +-- slideimp-1.2.0/slideimp/src/RcppExports.cpp | 35 - slideimp-1.2.0/slideimp/src/armaSVD.cpp | 234 +++++++--- slideimp-1.2.0/slideimp/src/find_windows.cpp | 70 ++- slideimp-1.2.0/slideimp/src/find_windows_flank.cpp | 78 ++- slideimp-1.2.0/slideimp/src/hybrid_topk_eig.h | 38 - slideimp-1.2.0/slideimp/src/impute_knn_brute.cpp | 74 ++- slideimp-1.2.0/slideimp/src/imputed_value.h | 1 slideimp-1.2.0/slideimp/src/lobpcg_warm.h | 55 ++ slideimp-1.2.0/slideimp/src/mat_stats.cpp | 113 ++++- slideimp-1.2.0/slideimp/tests/testthat/helper.R | 13 slideimp-1.2.0/slideimp/tests/testthat/test-col_vars.R | 6 slideimp-1.2.0/slideimp/tests/testthat/test-crate.R |only slideimp-1.2.0/slideimp/tests/testthat/test-group_imp.R | 141 ++++-- slideimp-1.2.0/slideimp/tests/testthat/test-knn_imp.R | 66 -- slideimp-1.2.0/slideimp/tests/testthat/test-mat_miss.R | 8 slideimp-1.2.0/slideimp/tests/testthat/test-pca_imp.R | 274 +++++++++--- slideimp-1.2.0/slideimp/tests/testthat/test-sim_mat.R | 16 slideimp-1.2.0/slideimp/tests/testthat/test-slide_imp.R | 123 +++-- slideimp-1.2.0/slideimp/tests/testthat/test-tune_imp.R | 184 ++++++-- 47 files changed, 2123 insertions(+), 1291 deletions(-)
Title: Easily Build, Simulate, and Explore Stock-and-Flow Models
Description: Stock-and-flow models are a computational method from the
field of system dynamics. They represent how systems change over time
and are mathematically equivalent to ordinary differential equations.
'sdbuildR' (system dynamics builder) provides an intuitive interface
for constructing stock-and-flow models without requiring extensive
domain knowledge. Models can quickly be simulated and revised,
supporting iterative development. 'sdbuildR' simulates models in 'R'
and 'Julia', and supports computationally intensive ensemble
simulations. Additionally, 'sdbuildR' can import models created in
'Insight Maker' (<https://insightmaker.com/>).
Author: Kyra Caitlin Evers [aut, cre, cph]
Maintainer: Kyra Caitlin Evers <kyra.c.evers@gmail.com>
Diff between sdbuildR versions 1.0.8 dated 2025-11-19 and 2.0.0 dated 2026-06-16
sdbuildR-1.0.8/sdbuildR/R/build_xmile.R |only sdbuildR-1.0.8/sdbuildR/R/custom_func.R |only sdbuildR-1.0.8/sdbuildR/R/globals.R |only sdbuildR-1.0.8/sdbuildR/R/helpers.R |only sdbuildR-1.0.8/sdbuildR/R/insightmaker_to_sfm.R |only sdbuildR-1.0.8/sdbuildR/R/julia_func.R |only sdbuildR-1.0.8/sdbuildR/R/julia_setup.R |only sdbuildR-1.0.8/sdbuildR/R/solvers.R |only sdbuildR-1.0.8/sdbuildR/R/template.R |only sdbuildR-1.0.8/sdbuildR/R/units.R |only sdbuildR-1.0.8/sdbuildR/R/visualise.R |only sdbuildR-1.0.8/sdbuildR/man/as.data.frame.sdbuildR_sim.Rd |only sdbuildR-1.0.8/sdbuildR/man/as.data.frame.sdbuildR_xmile.Rd |only sdbuildR-1.0.8/sdbuildR/man/build.Rd |only sdbuildR-1.0.8/sdbuildR/man/convert_u.Rd |only sdbuildR-1.0.8/sdbuildR/man/debugger.Rd |only sdbuildR-1.0.8/sdbuildR/man/drop_u.Rd |only sdbuildR-1.0.8/sdbuildR/man/find_dependencies.Rd |only sdbuildR-1.0.8/sdbuildR/man/get_build_code.Rd |only sdbuildR-1.0.8/sdbuildR/man/get_regex_time_units.Rd |only 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sdbuildR-1.0.8/sdbuildR/man/xmile.Rd |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-assemble_script_julia.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-assemble_script_r.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-build.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-conv_r.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-ensemble.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-helpers.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-insightmaker_to_sfm.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-julia_vs_r.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-visualise.R |only sdbuildR-2.0.0/sdbuildR/DESCRIPTION | 50 sdbuildR-2.0.0/sdbuildR/MD5 | 382 + sdbuildR-2.0.0/sdbuildR/NAMESPACE | 95 sdbuildR-2.0.0/sdbuildR/NEWS.md | 120 sdbuildR-2.0.0/sdbuildR/R/aaa.R |only sdbuildR-2.0.0/sdbuildR/R/assemble_helpers.R |only sdbuildR-2.0.0/sdbuildR/R/assemble_script_julia.R | 1730 ------ sdbuildR-2.0.0/sdbuildR/R/assemble_script_r.R | 776 --- sdbuildR-2.0.0/sdbuildR/R/compile_script.R |only sdbuildR-2.0.0/sdbuildR/R/conv_julia_distributions.R |only sdbuildR-2.0.0/sdbuildR/R/conv_julia_helpers.R |only sdbuildR-2.0.0/sdbuildR/R/conv_julia_statements.R |only sdbuildR-2.0.0/sdbuildR/R/ensemble.R |only sdbuildR-2.0.0/sdbuildR/R/ensemble_julia.R |only sdbuildR-2.0.0/sdbuildR/R/ensemble_r.R |only sdbuildR-2.0.0/sdbuildR/R/export_model.R |only sdbuildR-2.0.0/sdbuildR/R/export_psychomodels.R |only sdbuildR-2.0.0/sdbuildR/R/import_desolve.R |only sdbuildR-2.0.0/sdbuildR/R/import_insightmaker.R |only sdbuildR-2.0.0/sdbuildR/R/insightmaker_conv.R | 2535 ++++++---- sdbuildR-2.0.0/sdbuildR/R/insightmaker_conv_eqn.R | 1587 +----- sdbuildR-2.0.0/sdbuildR/R/interpret_unit_test.R |only sdbuildR-2.0.0/sdbuildR/R/julia_conv_ast.R |only sdbuildR-2.0.0/sdbuildR/R/julia_conv_calls.R |only sdbuildR-2.0.0/sdbuildR/R/julia_conv_eqn.R | 1532 ------ sdbuildR-2.0.0/sdbuildR/R/julia_conv_fallback.R |only sdbuildR-2.0.0/sdbuildR/R/julia_conv_validate.R |only sdbuildR-2.0.0/sdbuildR/R/lang_adapter.R |only sdbuildR-2.0.0/sdbuildR/R/order_equations.R |only sdbuildR-2.0.0/sdbuildR/R/plot.R |only sdbuildR-2.0.0/sdbuildR/R/plot_helpers.R |only sdbuildR-2.0.0/sdbuildR/R/scripts.R |only sdbuildR-2.0.0/sdbuildR/R/sdbuildR_custom_func.R |only sdbuildR-2.0.0/sdbuildR/R/sim_methods.R |only sdbuildR-2.0.0/sdbuildR/R/sim_settings.R |only sdbuildR-2.0.0/sdbuildR/R/simulate.R | 1678 ++---- sdbuildR-2.0.0/sdbuildR/R/stockflow.R |only sdbuildR-2.0.0/sdbuildR/R/summary_stockflow.R |only sdbuildR-2.0.0/sdbuildR/R/sysdata.rda |binary sdbuildR-2.0.0/sdbuildR/R/templates.R |only sdbuildR-2.0.0/sdbuildR/R/update.R |only sdbuildR-2.0.0/sdbuildR/R/use_julia.R |only sdbuildR-2.0.0/sdbuildR/R/utils.R |only sdbuildR-2.0.0/sdbuildR/R/verify.R |only sdbuildR-2.0.0/sdbuildR/R/zzz.R | 30 sdbuildR-2.0.0/sdbuildR/README.md | 175 sdbuildR-2.0.0/sdbuildR/inst/CITATION |only sdbuildR-2.0.0/sdbuildR/inst/Project.toml | 64 sdbuildR-2.0.0/sdbuildR/inst/init.jl | 45 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sdbuildR-2.0.0/sdbuildR/tests/testthat/test-cache-invalidation.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-change_name.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-compare_models.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-conv_julia.R | 747 +- sdbuildR-2.0.0/sdbuildR/tests/testthat/test-conv_julia_distributions.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-custom_func-nse.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-custom_func.R | 573 -- sdbuildR-2.0.0/sdbuildR/tests/testthat/test-edge-cases.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-ensemble-jl.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-ensemble-r.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-export_model.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-export_psychomodels.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-import_desolve.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-insightmaker.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-insightmaker_conv_eqn.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-interpret_unit_test.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-julia_conv_ast.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-language-switching.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-layout-invariants.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-meta.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-nse.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-order_equations.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-plot_ensemble_stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-plot_helpers.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-plot_simulate_stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-plot_stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-plot_verify_stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-prep-functions.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-print_simulate_stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-sdbuildR_custom_func.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-sim_methods.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-sim_settings.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-simulate.R | 438 + sdbuildR-2.0.0/sdbuildR/tests/testthat/test-stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-summary.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-templates.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-update.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-use_julia.R | 119 sdbuildR-2.0.0/sdbuildR/tests/testthat/test-utils.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-verify.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/abm |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/Balancing_an_Inverted_Pendulum.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/C_N_bacteria_DOM.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/Kepler_Ellipsen.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/Spring_Mass_Model.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/Stanford_Prison_Experiment.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/cld.InsightMaker |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/cld.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/population.InsightMaker |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/population.json |only 225 files changed, 5010 insertions(+), 8080 deletions(-)
Title: Unicode and Punycode Domain Name Processing
Description: High-performance Unicode and Punycode encoding/decoding for
internationalized domain names. Provides RFC 3492 compliant conversion
functions with a focus on URL processing and data analysis workflows.
Addresses limitations in existing R packages for handling international
domain names in web scraping and URL parsing applications.
Author: Bart Turczynski [aut, cre]
Maintainer: Bart Turczynski <bartek+punycoder@turczynski.pl>
Diff between punycoder versions 1.0.0 dated 2026-06-11 and 1.1.0 dated 2026-06-16
DESCRIPTION | 9 +- MD5 | 40 +++++---- NAMESPACE | 2 NEWS.md | 23 +++-- R/RcppExports.R | 8 + R/normalize.R |only R/validators.R | 6 - README.md | 17 ++- inst/doc/punycoder-intro.R | 10 +- inst/doc/punycoder-intro.Rmd | 10 +- inst/doc/punycoder-intro.html | 14 +-- man/host_normalize.Rd |only man/normalization_profile_info.Rd |only man/punycoder-package.Rd | 1 src/RcppExports.cpp | 22 +++++ src/exports.cpp | 35 ++++++++ src/init.c | 4 src/punycoder_nfc.cpp |only src/punycoder_nfc.h |only src/punycoder_normalize.cpp |only src/punycoder_normalize.h |only src/unicode_tables_16_0_0.cpp |only src/unicode_tables_16_0_0.h |only tests/testthat/test-backends.R | 165 ++++++++++++++++++++++++++++++-------- tests/testthat/test-normalize.R |only vignettes/punycoder-intro.Rmd | 10 +- 26 files changed, 290 insertions(+), 86 deletions(-)
Title: Demographic Modelling Using Projection Matrices
Description: Tools for modelling populations and demography using matrix projection models,
with deterministic and stochastic model implementations. Includes population projection,
indices of short- and long-term population size and growth, perturbation analysis,
convergence to stability or stationarity, and diagnostic and manipulation tools.
Author: Iain Stott [aut, cre],
Dave Hodgson [aut],
Stuart Townley [aut],
Stephen Ellner [ctb]
Maintainer: Iain Stott <iainmstott@gmail.com>
Diff between popdemo versions 1.3-3 dated 2026-03-09 and 1.3-4 dated 2026-06-16
ChangeLog | 1 DESCRIPTION | 6 +- MD5 | 16 +++--- R/popdemo-onAttach.R | 2 inst/doc/popdemo.R | 4 - inst/doc/popdemo.Rmd | 4 - inst/doc/popdemo.html | 132 +++++++++++++++++++++++++------------------------- vignettes/imgs |only vignettes/popdemo.Rmd | 4 - 9 files changed, 86 insertions(+), 83 deletions(-)
Title: Multivariate Outlier Detection Methods
Description: Provides methods for detecting multivariate outliers in numeric datasets. The package implements classical Mahalanobis distance, robust Minimum Covariance Determinant (MCD), and Principal Component Analysis (PCA)-based approaches for outlier detection. The methodology is informed by Aggarwal (2017) <doi:10.1007/978-3-319-47578-3> and Grentzelos, Caroni and Barranco-Chamorro (2020) <doi:10.1002/cmm4.1129>. Visualization functions are included to aid interpretation of detected outliers. Mahalanobis distance calculations are accelerated using 'C++' through 'Rcpp'.
Author: Senuri Yasara [aut, cre],
Pavanthi Sudasinghe [aut]
Maintainer: Senuri Yasara <senuriyasara@gmail.com>
Diff between MOutliers versions 0.1.1 dated 2026-06-15 and 0.1.2 dated 2026-06-16
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/plot_outliers.R | 3 +++ man/plot_outliers.Rd | 4 ++++ 4 files changed, 14 insertions(+), 7 deletions(-)
Title: Ultra-Fast Analysis of Sparse DNA Methylome via Recurrent
Pattern Encoding
Description: Methods for analyzing DNA methylation data via Most Recurrent Methylation Patterns (MRMPs). Supports cell-type annotation, spatial deconvolution, unsupervised clustering, and cancer cell-of-origin inference. Includes C-backed summaries for YAME “.cg/.cm” files (overlap counts, log2 odds ratios, beta/depth aggregation), an XGBoost classifier, NNLS deconvolution, and plotting utilities. Scales to large spatial and single-cell methylomes and is robust to extreme sparsity.
Author: Hongxiang Fu [aut, cre] ,
Wanding Zhou [cph, fnd],
The SAMtools/HTSlib authors [ctb, cph] ,
Attractive Chaos [ctb, cph] )
Maintainer: Hongxiang Fu <fhx@seas.upenn.edu>
Diff between MethScope versions 1.0.2 dated 2026-06-13 and 1.0.3 dated 2026-06-16
DESCRIPTION | 6 +-- MD5 | 14 ++++---- README.md | 18 +++++++++++ inst/doc/MethScope-Tutorial.R | 10 +++++- inst/doc/MethScope-Tutorial.Rmd | 13 ++++++-- inst/doc/MethScope-Tutorial.html | 62 +++++++++++++++++++++------------------ src/Makevars | 2 - vignettes/MethScope-Tutorial.Rmd | 13 ++++++-- 8 files changed, 91 insertions(+), 47 deletions(-)
Title: Classifications for Statistics Norway
Description: Functions to search, retrieve, apply and update classification
standards and code lists using Statistics Norway's API
<https://www.ssb.no/klass> from the system 'KLASS'. Retrieves classifications
by date with options to choose language, hierarchical level and formatting.
Author: Susie Jentoft [aut],
Diana-Cristina Iancu [aut],
Lisa Li [aut],
Oeyvind I. Berntsen [aut, cre],
Statistics Norway [cph]
Maintainer: Oeyvind I. Berntsen <Oyvind.Berntsen@ssb.no>
Diff between klassR versions 1.0.5 dated 2026-02-26 and 1.0.6 dated 2026-06-16
DESCRIPTION | 20 LICENSE | 2 MD5 | 130 +-- NAMESPACE | 36 NEWS.md | 91 +- R/Convert_table.R | 42 - R/Hent_data.R | 880 +++++++++++------------ R/KLASS.R | 444 +++++------ R/Klass_list.R | 682 ++++++++--------- R/Levels.R | 92 +- R/UpdateKlass-graph-build.R | 868 +++++++++++----------- R/UpdateKlass-graph-navigate.R | 412 +++++----- R/UpdateKlass.R | 415 +++++----- R/checkLevel.R | 38 R/data.R | 72 - R/find_equivalents.R |only R/format.R | 152 +-- man/CheckDate.Rd | 30 man/ConvertTable.Rd | 58 - man/GetBaseUrl.Rd | 30 man/GetNums.Rd | 36 man/GetUrl.Rd | 36 man/GetUrl2.Rd | 40 - man/Levels.Rd | 44 - man/MakeChar.Rd | 36 man/MakeUrl.Rd | 84 +- man/apply_klass.Rd | 134 +-- man/check_connect.Rd | 40 - man/correspond_list.Rd | 62 - man/count_neighbors.Rd | 50 - man/find_dates.Rd | 64 - man/find_equivalent_codes.Rd |only man/find_equivalent_nodes.Rd |only man/find_name.Rd | 48 - man/find_variant_from.Rd | 52 - man/find_variant_to.Rd | 52 - man/formattering.Rd | 44 - man/formattering_kommune.Rd | 38 man/formattering_nace.Rd | 36 man/get_family.Rd | 50 - man/get_klass.Rd | 146 +-- man/get_name.Rd | 46 - man/get_variant_name.Rd | 34 man/get_version.Rd | 62 - man/is_combined.Rd | 80 +- man/is_split.Rd | 54 - man/klass_131_1964_graph.Rd | 32 man/klass_131_2020_graph.Rd | 32 man/klass_131_graph.Rd | 32 man/klass_graph.Rd | 76 - man/klass_node.Rd | 74 - man/klassdata.Rd | 50 - man/levelCheck.Rd | 49 - man/list_family.Rd | 58 - man/list_klass.Rd | 54 - man/search_klass.Rd | 54 - man/stop_quietly.Rd | 28 man/update_code.Rd | 140 +-- man/update_klass.Rd | 218 ++--- man/update_klass_node.Rd | 70 - tests/testthat.R | 8 tests/testthat/test-UpdateKlass-graph-navigate.R | 88 +- tests/testthat/test-UpdateKlass.R | 414 +++++----- tests/testthat/test_ApplyKlass.R | 412 +++++----- tests/testthat/test_GetKlass.R | 336 ++++---- tests/testthat/test_ListKlass.R | 50 - tests/testthat/test_find_equivalent_codes.R |only tests/testthat/test_formattering.R | 44 - 68 files changed, 4101 insertions(+), 4080 deletions(-)
Title: Discrete Choice and Competitive Reactions: End-to-End Simulation
Description: Although discrete choice (choice-based conjoint) analysis has become a widely used
technique for the elicitation of consumer preferences and hence a foundation for product
design, to the best of our knowledge, there exists neither free and open-source nor
commercial software that covers the game-theoretic simulation of competitive reactions among
firms based on discrete choice models to improve decision making beyond traditional product
(line) optimization. The package does not only provide functions to fill this gap but
comprises an entire simulation pipeline including the upstream processes of discrete choice
analysis itself. It ranges from preference generation, choice design, design assessment,
error and response simulation, through hierarchical Bayesian estimation of mixed logit models
as well as convergence and model assessment, to Nash equilibrium computation. Doing so, it
partly draws from established packages concerned with discrete choice analysis. While its
structure general [...truncated...]
Author: Jan H. R. Dressler [aut, cre, cph],
Peter Kurz [ths],
Winfried J. Steiner [ths]
Maintainer: Jan H. R. Dressler <jhrd13@tu-clausthal.de>
Diff between cash versions 1.0.2 dated 2026-06-09 and 1.0.3 dated 2026-06-16
DESCRIPTION | 9 +++++---- MD5 | 35 ++++++++++++++++++----------------- R/B_prefgen.R | 3 +++ R/C_choicedes.R | 13 ++++++++----- R/D_responsesim.R | 3 +++ R/E_hbmxlest.R | 3 +++ R/F_designeval.R | 3 +++ R/G_modeleval.R | 35 ++++++++++++++++++++--------------- R/H_precomputeM.R | 5 ++++- R/I_preoptandnashgame.R | 3 +++ inst |only man/B_prefgen.Rd | 3 +++ man/C_choicedes.Rd | 3 +++ man/D_responsesim.Rd | 3 +++ man/E_hbmxlest.Rd | 3 +++ man/F_designeval.Rd | 3 +++ man/G_modeleval.Rd | 3 +++ man/H_precomputeM.Rd | 3 +++ man/I_preoptandnashgame.Rd | 3 +++ 19 files changed, 94 insertions(+), 42 deletions(-)
Title: Forecasting with Bayesian Panel Vector Autoregressions
Description: Provides Bayesian estimation and forecasting of dynamic panel data using
Bayesian Panel Vector Autoregressions with hierarchical prior distributions
following the specification by Sanchez-Martinez & Woźniak (2026) <doi:10.48550/arXiv.2606.14143>.
The models include country-specific Vector Autoregressions (VARs) that share a global prior
distribution that extend the model by Jarociński (2010) <doi:10.1002/jae.1082>.
Under this prior expected value, each country's system follows
a global VAR with country-invariant parameters. Further flexibility is
provided by the hierarchical prior structure that retains the Minnesota prior
interpretation for the global VAR and features estimated prior covariance
matrices, shrinkage, and persistence levels. Bayesian forecasting is developed
for models including exogenous variables, allowing conditional forecasts given
the future trajectories of some variables and restricted forecasts assuring
that rates are forecasted to stay positive an [...truncated...]
Author: Tomasz Wozniak [aut, cre] ,
Miguel Sanchez-Martinez [ctb],
International Labour Organization [cph]
Maintainer: Tomasz Wozniak <wozniak.tom@pm.me>
Diff between bpvars versions 1.0 dated 2025-12-11 and 2.0 dated 2026-06-16
bpvars-1.0/bpvars/src/rtmvtnorm.cpp |only bpvars-1.0/bpvars/src/rtmvtnorm.h |only bpvars-2.0/bpvars/DESCRIPTION | 40 - bpvars-2.0/bpvars/MD5 | 197 +++-- bpvars-2.0/bpvars/NAMESPACE | 2 bpvars-2.0/bpvars/NEWS.md | 5 bpvars-2.0/bpvars/R/bpvars-package.R | 25 bpvars-2.0/bpvars/R/compute_forecast_performance.R | 8 bpvars-2.0/bpvars/R/compute_variance_decompositions.R | 18 bpvars-2.0/bpvars/R/country_grouping_incomegroup.R | 2 bpvars-2.0/bpvars/R/country_grouping_region.R | 2 bpvars-2.0/bpvars/R/country_grouping_subregionbroad.R | 2 bpvars-2.0/bpvars/R/country_grouping_subregiondetailed.R | 2 bpvars-2.0/bpvars/R/estimate.BVARGROUPPANEL.R | 7 bpvars-2.0/bpvars/R/estimate.BVARGROUPPRIORPANEL.R | 7 bpvars-2.0/bpvars/R/estimate.bvarPANEL.R | 7 bpvars-2.0/bpvars/R/estimate.bvars.R | 7 bpvars-2.0/bpvars/R/forecast.R | 28 bpvars-2.0/bpvars/R/forecast_performance.R | 7 bpvars-2.0/bpvars/R/ilo_conditional_forecasts.R |only bpvars-2.0/bpvars/R/ilo_dynamic_panel.R | 2 bpvars-2.0/bpvars/R/ilo_dynamic_panel_missing.R | 2 bpvars-2.0/bpvars/R/ilo_exogenous_forecasts.R | 10 bpvars-2.0/bpvars/R/ilo_exogenous_variables.R | 2 bpvars-2.0/bpvars/R/ilo_exogenous_variables_missing.R | 2 bpvars-2.0/bpvars/R/plot.R | 2 bpvars-2.0/bpvars/R/summary.R | 4 bpvars-2.0/bpvars/README.md | 82 +- bpvars-2.0/bpvars/build/partial.rdb |binary bpvars-2.0/bpvars/build/vignette.rds |only bpvars-2.0/bpvars/data/country_grouping_incomegroup.rda |binary bpvars-2.0/bpvars/data/country_grouping_region.rda |binary bpvars-2.0/bpvars/data/country_grouping_subregionbroad.rda |binary bpvars-2.0/bpvars/data/country_grouping_subregiondetailed.rda |binary bpvars-2.0/bpvars/data/ilo_conditional_forecasts.rda |only bpvars-2.0/bpvars/data/ilo_dynamic_panel.rda |binary bpvars-2.0/bpvars/data/ilo_dynamic_panel_missing.rda |binary bpvars-2.0/bpvars/data/ilo_exogenous_forecasts.rda |binary bpvars-2.0/bpvars/data/ilo_exogenous_variables.rda |binary bpvars-2.0/bpvars/data/ilo_exogenous_variables_missing.rda |binary bpvars-2.0/bpvars/inst/CITATION |only bpvars-2.0/bpvars/inst/doc |only bpvars-2.0/bpvars/inst/include/bpvars_RcppExports.h | 4 bpvars-2.0/bpvars/inst/tinytest/test_forecast.R | 5 bpvars-2.0/bpvars/man/bpvars-package.Rd | 23 bpvars-2.0/bpvars/man/compute_forecast_performance.ForecastsPANELpoos.Rd | 7 bpvars-2.0/bpvars/man/compute_forecast_performance.Rd | 7 bpvars-2.0/bpvars/man/compute_variance_decompositions.PosteriorBVARGROUPPANEL.Rd | 6 bpvars-2.0/bpvars/man/compute_variance_decompositions.PosteriorBVARPANEL.Rd | 6 bpvars-2.0/bpvars/man/compute_variance_decompositions.PosteriorBVARs.Rd | 6 bpvars-2.0/bpvars/man/country_grouping_incomegroup.Rd | 2 bpvars-2.0/bpvars/man/country_grouping_region.Rd | 2 bpvars-2.0/bpvars/man/country_grouping_subregionbroad.Rd | 2 bpvars-2.0/bpvars/man/country_grouping_subregiondetailed.Rd | 2 bpvars-2.0/bpvars/man/estimate.BVARGROUPPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.BVARGROUPPRIORPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.BVARPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.BVARs.Rd | 7 bpvars-2.0/bpvars/man/estimate.PosteriorBVARGROUPPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.PosteriorBVARGROUPPRIORPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.PosteriorBVARPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.PosteriorBVARs.Rd | 7 bpvars-2.0/bpvars/man/forecast.PosteriorBVARGROUPPANEL.Rd | 10 bpvars-2.0/bpvars/man/forecast.PosteriorBVARGROUPPRIORPANEL.Rd | 10 bpvars-2.0/bpvars/man/forecast.PosteriorBVARPANEL.Rd | 10 bpvars-2.0/bpvars/man/forecast.PosteriorBVARs.Rd | 10 bpvars-2.0/bpvars/man/forecast_poos_recursively.BVARGROUPPANEL.Rd | 7 bpvars-2.0/bpvars/man/forecast_poos_recursively.BVARGROUPPRIORPANEL.Rd | 7 bpvars-2.0/bpvars/man/forecast_poos_recursively.BVARPANEL.Rd | 7 bpvars-2.0/bpvars/man/forecast_poos_recursively.BVARs.Rd | 7 bpvars-2.0/bpvars/man/forecast_poos_recursively.Rd | 7 bpvars-2.0/bpvars/man/ilo_conditional_forecasts.Rd |only bpvars-2.0/bpvars/man/ilo_dynamic_panel.Rd | 2 bpvars-2.0/bpvars/man/ilo_dynamic_panel_missing.Rd | 2 bpvars-2.0/bpvars/man/ilo_exogenous_forecasts.Rd | 10 bpvars-2.0/bpvars/man/ilo_exogenous_variables.Rd | 2 bpvars-2.0/bpvars/man/ilo_exogenous_variables_missing.Rd | 2 bpvars-2.0/bpvars/man/plot.ForecastsPANEL.Rd | 2 bpvars-2.0/bpvars/man/reexports.Rd | 2 bpvars-2.0/bpvars/man/specify_bvarGroupPANEL.Rd | 177 ++--- bpvars-2.0/bpvars/man/specify_bvarGroupPriorPANEL.Rd | 316 ++++----- bpvars-2.0/bpvars/man/specify_bvarPANEL.Rd | 335 ++++------ bpvars-2.0/bpvars/man/specify_bvars.Rd | 335 ++++------ bpvars-2.0/bpvars/man/specify_panel_data_matrices.Rd | 128 +-- bpvars-2.0/bpvars/man/specify_poosf_exercise.Rd | 119 +-- bpvars-2.0/bpvars/man/specify_posterior_bvarGroupPANEL.Rd | 99 +- bpvars-2.0/bpvars/man/specify_posterior_bvarGroupPriorPANEL.Rd | 99 +- bpvars-2.0/bpvars/man/specify_posterior_bvarPANEL.Rd | 145 ++-- bpvars-2.0/bpvars/man/specify_posterior_bvars.Rd | 145 ++-- bpvars-2.0/bpvars/man/specify_prior_bvarPANEL.Rd | 160 ++-- bpvars-2.0/bpvars/man/specify_prior_bvars.Rd | 154 ++-- bpvars-2.0/bpvars/man/specify_starting_values_bvarGroupPANEL.Rd | 219 +++--- bpvars-2.0/bpvars/man/specify_starting_values_bvarGroupPriorPANEL.Rd | 208 +++--- bpvars-2.0/bpvars/man/specify_starting_values_bvarPANEL.Rd | 198 ++--- bpvars-2.0/bpvars/man/specify_starting_values_bvars.Rd | 192 ++--- bpvars-2.0/bpvars/man/summary.ForecastsPANEL.Rd | 4 bpvars-2.0/bpvars/src/Makevars | 2 bpvars-2.0/bpvars/src/Makevars.win | 2 bpvars-2.0/bpvars/src/RcppExports.cpp | 144 ++-- bpvars-2.0/bpvars/src/forecast_panel.cpp | 36 - bpvars-2.0/bpvars/src/forecast_panel.h | 10 bpvars-2.0/bpvars/src/forecast_performance.cpp | 1 bpvars-2.0/bpvars/vignettes |only 103 files changed, 2042 insertions(+), 1883 deletions(-)
Title: Bayesian Aggregate Treatment Effects
Description: Running and comparing meta-analyses of data with hierarchical
Bayesian models in Stan, including convenience functions for formatting
data, plotting and pooling measures specific to meta-analysis. This implements many models
from Meager (2019) <doi:10.1257/app.20170299>.
Author: Witold Wiecek [cre, aut],
Rachael Meager [aut],
Brice Green [ctb] ,
Danny Toomey [ctb] ,
Trustees of Columbia University [cph]
Maintainer: Witold Wiecek <witold.wiecek@gmail.com>
Diff between baggr versions 0.8 dated 2026-02-10 and 0.8.2 dated 2026-06-16
baggr-0.8.2/baggr/DESCRIPTION | 8 baggr-0.8.2/baggr/MD5 | 164 - baggr-0.8.2/baggr/NAMESPACE | 2 baggr-0.8.2/baggr/NEWS.md | 33 baggr-0.8.2/baggr/R/auto_prior.R | 72 baggr-0.8.2/baggr/R/baggr-package.R | 4 baggr-0.8.2/baggr/R/baggr.R | 96 baggr-0.8.2/baggr/R/baggr_compare.R | 8 baggr-0.8.2/baggr/R/binary_to_individual.R | 4 baggr-0.8.2/baggr/R/check_cols.R | 22 baggr-0.8.2/baggr/R/convert_inputs.R | 169 + baggr-0.8.2/baggr/R/effect_draw.R | 26 baggr-0.8.2/baggr/R/fixed_effects.R | 2 baggr-0.8.2/baggr/R/forest_plot.R | 2 baggr-0.8.2/baggr/R/funnel.R | 11 baggr-0.8.2/baggr/R/group_effects.R | 68 baggr-0.8.2/baggr/R/helpers.R | 10 baggr-0.8.2/baggr/R/labbe.R | 2 baggr-0.8.2/baggr/R/loocv.R | 6 baggr-0.8.2/baggr/R/pooling_metrics.R | 10 baggr-0.8.2/baggr/R/predict.R |only baggr-0.8.2/baggr/R/prepare_ma.R | 6 baggr-0.8.2/baggr/R/print_baggr.R | 4 baggr-0.8.2/baggr/R/prior_dist.R | 4 baggr-0.8.2/baggr/R/selection.R | 17 baggr-0.8.2/baggr/R/trt_effects.R | 4 baggr-0.8.2/baggr/R/vitamin_a.R |only baggr-0.8.2/baggr/build/vignette.rds |binary baggr-0.8.2/baggr/data/vitamin_a.rda |only baggr-0.8.2/baggr/inst/doc/baggr.R | 8 baggr-0.8.2/baggr/inst/doc/baggr.Rmd | 33 baggr-0.8.2/baggr/inst/doc/baggr.html | 257 +- baggr-0.8.2/baggr/inst/doc/baggr_binary.Rmd | 7 baggr-0.8.2/baggr/inst/doc/baggr_binary.html | 38 baggr-0.8.2/baggr/inst/doc/baggr_selection.Rmd |only baggr-0.8.2/baggr/inst/doc/baggr_selection.html |only baggr-0.8.2/baggr/inst/stan/functions/selection.stan | 121 - baggr-0.8.2/baggr/inst/stan/logit.stan | 5 baggr-0.8.2/baggr/inst/stan/mutau.stan | 26 baggr-0.8.2/baggr/inst/stan/mutau_full.stan | 5 baggr-0.8.2/baggr/inst/stan/rubin.stan | 70 baggr-0.8.2/baggr/inst/stan/rubin_full.stan | 8 baggr-0.8.2/baggr/man/baggr-package.Rd | 4 baggr-0.8.2/baggr/man/baggr.Rd | 69 baggr-0.8.2/baggr/man/baggr_compare.Rd | 8 baggr-0.8.2/baggr/man/binary_to_individual.Rd | 4 baggr-0.8.2/baggr/man/convert_inputs.Rd | 158 - baggr-0.8.2/baggr/man/effect_draw.Rd | 20 baggr-0.8.2/baggr/man/effect_plot.Rd | 6 baggr-0.8.2/baggr/man/fixed_effects.Rd | 2 baggr-0.8.2/baggr/man/forest_plot.Rd | 2 baggr-0.8.2/baggr/man/funnel_plot.Rd | 9 baggr-0.8.2/baggr/man/labbe.Rd | 2 baggr-0.8.2/baggr/man/loocv.Rd | 4 baggr-0.8.2/baggr/man/mutau_cor.Rd | 2 baggr-0.8.2/baggr/man/pooling.Rd | 10 baggr-0.8.2/baggr/man/predict.baggr.Rd |only baggr-0.8.2/baggr/man/prepare_ma.Rd | 6 baggr-0.8.2/baggr/man/prepare_prior.Rd | 18 baggr-0.8.2/baggr/man/print.baggr.Rd | 2 baggr-0.8.2/baggr/man/priors.Rd | 4 baggr-0.8.2/baggr/man/selection.Rd | 18 baggr-0.8.2/baggr/man/treatment_effect.Rd | 2 baggr-0.8.2/baggr/man/vitamin_a.Rd |only baggr-0.8.2/baggr/src/Makevars |only baggr-0.8.2/baggr/src/stanExports_logit.h | 15 baggr-0.8.2/baggr/src/stanExports_mutau.h | 463 ++-- baggr-0.8.2/baggr/src/stanExports_rubin.h | 1116 ++++++---- baggr-0.8.2/baggr/src/stanExports_rubin_full.h | 33 baggr-0.8.2/baggr/tests/testthat/Rplots.pdf |binary baggr-0.8.2/baggr/tests/testthat/test_binary.R | 837 ++++--- baggr-0.8.2/baggr/tests/testthat/test_full.R | 195 + baggr-0.8.2/baggr/tests/testthat/test_group_effects_meta_regression_full.R |only baggr-0.8.2/baggr/tests/testthat/test_helpers.R | 6 baggr-0.8.2/baggr/tests/testthat/test_mutau.R | 32 baggr-0.8.2/baggr/tests/testthat/test_mutau_logpd.R |only baggr-0.8.2/baggr/tests/testthat/test_onerow.R | 8 baggr-0.8.2/baggr/tests/testthat/test_prior.R | 59 baggr-0.8.2/baggr/tests/testthat/test_rubin.R | 923 ++++---- baggr-0.8.2/baggr/tests/testthat/test_selection_and_validation.R | 137 + baggr-0.8.2/baggr/tests/testthat/test_vitamin_a.R |only baggr-0.8.2/baggr/tools |only baggr-0.8.2/baggr/vignettes/baggr.Rmd | 33 baggr-0.8.2/baggr/vignettes/baggr.bib | 65 baggr-0.8.2/baggr/vignettes/baggr_binary.Rmd | 7 baggr-0.8.2/baggr/vignettes/baggr_binary.Rmd.orig | 7 baggr-0.8.2/baggr/vignettes/baggr_selection.Rmd |only baggr-0.8.2/baggr/vignettes/baggr_selection.Rmd.orig |only baggr-0.8.2/baggr/vignettes/fig/selection-unnamed-chunk-3-1.png |only baggr-0.8.2/baggr/vignettes/recompute_vigs.R | 1 baggr-0.8/baggr/R/prior_summary.R |only 91 files changed, 3566 insertions(+), 2053 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] ,
Posit Software, PBC [cph, fnd],
Christophe Dervieux [ctb] ,
Devon Ryan [ctb] ,
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.59 dated 2026-03-28 and 0.60 dated 2026-06-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/install.R | 10 +++++++++- R/platforms.R | 4 ++-- 4 files changed, 17 insertions(+), 9 deletions(-)
Title: A Simple HTTP Server to Serve Static Files or Dynamic Documents
Description: Start an HTTP server in R to serve static files, or dynamic
documents that can be converted to HTML files (e.g., R Markdown) under a
given directory.
Author: Yihui Xie [aut, cre] ,
Carson Sievert [ctb],
Jesse Anderson [ctb],
Ramnath Vaidyanathan [ctb],
Romain Lesur [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between servr versions 0.32 dated 2024-10-04 and 0.33 dated 2026-06-16
DESCRIPTION | 15 +++-- MD5 | 12 ++-- R/static.R | 130 ++++++++++++++++++--------------------------------- R/utils.R | 34 ------------- man/create_server.Rd | 9 +-- man/httd.Rd | 5 - man/server_config.Rd | 6 +- 7 files changed, 70 insertions(+), 141 deletions(-)
Title: Build and Raytrace 3D Scenes
Description: Render scenes using pathtracing. Build 3D scenes out of spheres, cubes, planes, disks, triangles, cones, curves, line segments, cylinders, ellipsoids, and 3D models in the 'Wavefront' OBJ file format or the PLY Polygon File Format. Supports several material types, textures, multicore rendering, and tone-mapping. Based on the "Ray Tracing in One Weekend" book series. Peter Shirley (2018) <https://raytracing.github.io>.
Author: Tyler Morgan-Wall [aut, cph, cre] ,
Syoyo Fujita [ctb, cph],
Vilya Harvey [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayrender versions 0.38.10 dated 2025-02-28 and 0.41.3 dated 2026-06-16
rayrender-0.38.10/rayrender/R/save_png.R |only rayrender-0.38.10/rayrender/R/utils-pipe.R |only rayrender-0.38.10/rayrender/configure.ac |only rayrender-0.38.10/rayrender/man/pipe.Rd |only rayrender-0.38.10/rayrender/man/run_documentation.Rd |only rayrender-0.38.10/rayrender/man/save_png.Rd |only rayrender-0.38.10/rayrender/src/Makevars.win |only rayrender-0.38.10/rayrender/src/PreviewDisplay.cpp |only rayrender-0.38.10/rayrender/src/PreviewDisplay.h |only rayrender-0.38.10/rayrender/src/RayMatrix.cpp |only rayrender-0.38.10/rayrender/src/RayMatrix.h |only rayrender-0.38.10/rayrender/src/aabb.cpp |only rayrender-0.38.10/rayrender/src/aabb.h |only rayrender-0.38.10/rayrender/src/adaptivesampler.cpp |only rayrender-0.38.10/rayrender/src/adaptivesampler.h |only rayrender-0.38.10/rayrender/src/animatedtransform.cpp |only rayrender-0.38.10/rayrender/src/animatedtransform.h |only rayrender-0.38.10/rayrender/src/assert.cpp |only rayrender-0.38.10/rayrender/src/assert.h |only rayrender-0.38.10/rayrender/src/bounds.h |only rayrender-0.38.10/rayrender/src/box.cpp |only rayrender-0.38.10/rayrender/src/box.h |only rayrender-0.38.10/rayrender/src/buildscene.cpp |only rayrender-0.38.10/rayrender/src/buildscene.h |only rayrender-0.38.10/rayrender/src/bvh.cpp |only rayrender-0.38.10/rayrender/src/bvh.h |only rayrender-0.38.10/rayrender/src/calcnormals.cpp |only rayrender-0.38.10/rayrender/src/calcnormals.h |only rayrender-0.38.10/rayrender/src/calctangents.cpp |only rayrender-0.38.10/rayrender/src/calctangents.h |only rayrender-0.38.10/rayrender/src/camera.cpp |only rayrender-0.38.10/rayrender/src/camera.h |only rayrender-0.38.10/rayrender/src/color.cpp |only rayrender-0.38.10/rayrender/src/color.h |only rayrender-0.38.10/rayrender/src/constant.cpp |only rayrender-0.38.10/rayrender/src/constant.h |only rayrender-0.38.10/rayrender/src/csg.cpp |only rayrender-0.38.10/rayrender/src/csg.h |only rayrender-0.38.10/rayrender/src/curve.cpp |only 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Title: National Emergency Medical Service Quality Alliance Measure
Calculations
Description: Designed to automate the calculation of Emergency Medical
Service (EMS) quality metrics, 'nemsqar' implements measures defined
by the National EMS Quality Alliance (NEMSQA). By providing reliable,
evidence-based quality assessments, the package supports EMS agencies,
healthcare providers, and researchers in evaluating and improving
patient outcomes. Users can find details on all approved NEMSQA
measures at <https://www.nemsqa.org/measures>. Full technical
specifications, including documentation and pseudocode used to develop
'nemsqar', are available on the NEMSQA website after creating a user
profile at <https://www.nemsqa.org>.
Author: Nicolas Foss [aut, cre],
Samuel Kordik [aut] ,
Alyssa Green [ctb],
Iowa Department of Health and Human Services [cph]
Maintainer: Nicolas Foss <nicolas.foss@hhs.iowa.gov>
Diff between nemsqar versions 1.2.0 dated 2026-05-12 and 1.2.1 dated 2026-06-16
DESCRIPTION | 15 ++++++------ MD5 | 58 ++++++++++++++++++++++++----------------------- NEWS.md | 12 ++++++++- R/airway_01.R | 56 ++++++++++++++++++++++++--------------------- R/airway_05.R | 56 ++++++++++++++++++++++++--------------------- R/airway_18.R | 52 +++++++++++++++++++++--------------------- R/airway_18_population.R | 34 +++++++++++++-------------- R/asthma_01.R | 56 ++++++++++++++++++++++++--------------------- R/constants.R | 2 - R/globalVariables.R | 6 ++-- R/hypoglycemia_01.R | 56 ++++++++++++++++++++++++--------------------- R/pediatrics_03b.R | 56 ++++++++++++++++++++++++--------------------- R/respiratory_01.R | 56 ++++++++++++++++++++++++--------------------- R/respiratory_02.R | 56 ++++++++++++++++++++++++--------------------- R/safety_01.R | 56 ++++++++++++++++++++++++--------------------- R/safety_02.R | 56 ++++++++++++++++++++++++--------------------- R/safety_04.R | 56 ++++++++++++++++++++++++--------------------- R/seizure_02.R | 56 ++++++++++++++++++++++++--------------------- R/stroke_01.R | 56 ++++++++++++++++++++++++--------------------- R/syncope_01.R | 56 ++++++++++++++++++++++++--------------------- R/tbi_01.R | 56 ++++++++++++++++++++++++--------------------- R/tbi_01_population.R | 6 ++-- R/trauma_01.R | 56 ++++++++++++++++++++++++--------------------- R/trauma_03.R | 56 ++++++++++++++++++++++++--------------------- R/trauma_04.R | 56 ++++++++++++++++++++++++--------------------- R/trauma_08.R | 56 ++++++++++++++++++++++++--------------------- R/trauma_14.R | 56 ++++++++++++++++++++++++--------------------- R/ttr_01.R | 56 ++++++++++++++++++++++++--------------------- README.md | 2 - inst/WORDLIST |only tests/spelling.R |only 31 files changed, 699 insertions(+), 608 deletions(-)
Title: Forecasting Time Series by Theta Models
Description: Routines for forecasting univariate time series using Theta Models.
Author: Jose Augusto Fiorucci [aut, cre, cph] ,
Francisco Louzada [aut, cph] ,
Igor De Oliveira Barros Faluhelyi [aut, ctb]
Maintainer: Jose Augusto Fiorucci <jafiorucci@gmail.com>
Diff between forecTheta versions 3.0 dated 2025-05-20 and 3.0.3 dated 2026-06-16
ChangeLog | 8 +++++++ DESCRIPTION | 6 ++--- MD5 | 10 ++++----- R/forecastFunctions.R | 49 +++++++++++++++++++++------------------------- man/baggedThetaModels.Rd | 12 ++++------- man/forecTheta-package.Rd | 4 +-- 6 files changed, 46 insertions(+), 43 deletions(-)
Title: Scientific Content and Citation Analysis from PDF Documents
Description: Provides comprehensive tools for extracting and analyzing scientific
content from PDF documents, including citation extraction, reference matching,
text analysis, and bibliometric indicators. Supports multi-column PDF layouts,
'CrossRef' API <https://www.crossref.org/documentation/retrieve-metadata/rest-api/> integration, and advanced citation parsing.
Author: Massimo Aria [cre, aut, cph] ,
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between contentanalysis versions 1.1.0 dated 2026-05-19 and 1.1.1 dated 2026-06-16
DESCRIPTION | 6 ++-- MD5 | 10 +++---- NEWS.md | 2 + README.md | 2 - inst/doc/introduction.html | 38 +++++++++++++++--------------- man/figures/README-unnamed-chunk-10-1.png |binary 6 files changed, 30 insertions(+), 28 deletions(-)
More information about contentanalysis at CRAN
Permanent link
Title: A Collection of Database, Data Structure, Visualization, and
Utility Functions for R
Description: The caroline R library contains dozens of functions useful
for: database migration (dbWriteTable2), database style joins &
aggregation (nerge, groupBy, & bestBy), data structure
conversion (nv, tab2df), legend table making (sstable & leghead),
automatic legend positioning for scatter and box plots (),
plot annotation (labsegs & mvlabs), data visualization
(pies, sparge, confound.grid & raPlot), character string manipulation (m & pad),
file I/O (write.delim), batch scripting, data exploration, and more.
The package's greatest contributions lie in the database style merge,
aggregation and interface functions as well as in it's extensive
use and propagation of row, column and vector names in most functions.
Author: David Schruth [aut, cre]
Maintainer: David Schruth <code@anthropoidea.org>
Diff between caroline versions 0.9.9 dated 2024-10-21 and 1.0.0 dated 2026-06-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/plot.sparge.R | 35 ++++++++++++++++++++--------------- R/string.R | 5 ++++- man/plot.sparge.Rd | 7 ++++--- 5 files changed, 36 insertions(+), 27 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [ctb] ,
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Atsushi Yasumoto [ctb] ,
Aust Frederik [ctb] ,
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Clif [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.46 dated 2025-12-05 and 0.47 dated 2026-06-16
DESCRIPTION | 10 - MD5 | 52 +++++----- R/bs4_book.R | 4 R/gitbook.R | 2 R/html.R | 3 R/publish.R | 17 --- R/render.R | 4 R/skeleton.R | 18 ++- R/utils.R | 4 README.md | 4 build/vignette.rds |binary inst/CITATION | 2 inst/doc/bookdown.R | 4 inst/doc/bookdown.Rmd | 34 +++--- inst/doc/bookdown.html | 45 ++++---- inst/rstudio/templates/project/resources/common/05-blocks.Rmd | 4 inst/rstudio/templates/project/resources/common/06-share.Rmd | 2 inst/rstudio/templates/project/resources/common/README.md | 2 inst/rstudio/templates/project/resources/common/index.Rmd | 2 man/bookdown-package.Rd | 5 man/bs4_book.Rd | 4 man/fence_theorems.Rd | 4 man/gitbook.Rd | 2 man/html_document2.Rd | 2 man/render_book.Rd | 4 tests/testthat/helper-validate_html.R | 17 ++- vignettes/bookdown.Rmd | 34 +++--- 27 files changed, 148 insertions(+), 137 deletions(-)
Title: Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It implements the comprehensive workflow for science mapping analysis proposed in Aria M. and
Cuccurullo C. (2017) <doi:10.1016/j.joi.2017.08.007>.
'bibliometrix' provides various routines for importing bibliographic data from 'SCOPUS',
'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions'
(<https://www.dimensions.ai/>), 'OpenAlex' (<https://openalex.org/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>), 'Lens' (<https://lens.org>),
and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut, cph] ,
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 5.4.0 dated 2026-05-16 and 5.4.1 dated 2026-06-16
bibliometrix-5.4.0/bibliometrix/tests/testthat/Rplots.pdf |only bibliometrix-5.4.1/bibliometrix/DESCRIPTION | 8 bibliometrix-5.4.1/bibliometrix/MD5 | 37 - bibliometrix-5.4.1/bibliometrix/NEWS | 7 bibliometrix-5.4.1/bibliometrix/R/apply_citation_matching.R | 270 +++++++++- bibliometrix-5.4.1/bibliometrix/R/convert2df.R | 7 bibliometrix-5.4.1/bibliometrix/R/plotThematicEvolution.R | 30 + bibliometrix-5.4.1/bibliometrix/R/summary.bibliometrix.R | 2 bibliometrix-5.4.1/bibliometrix/R/thematicMap.R | 22 bibliometrix-5.4.1/bibliometrix/R/zzz.R | 12 bibliometrix-5.4.1/bibliometrix/build/partial.rdb |binary bibliometrix-5.4.1/bibliometrix/inst/CITATION | 12 bibliometrix-5.4.1/bibliometrix/inst/biblioshiny/biblioAI.R | 163 +++++- bibliometrix-5.4.1/bibliometrix/inst/biblioshiny/contentAnalysisServer.R | 2 bibliometrix-5.4.1/bibliometrix/inst/biblioshiny/server.R | 118 ---- bibliometrix-5.4.1/bibliometrix/inst/biblioshiny/ui.R | 126 +++- bibliometrix-5.4.1/bibliometrix/inst/biblioshiny/utils.R | 6 bibliometrix-5.4.1/bibliometrix/man/applyCitationMatching.Rd | 42 + bibliometrix-5.4.1/bibliometrix/man/applyReferenceMatching.Rd | 42 + bibliometrix-5.4.1/bibliometrix/man/normalize_citations.Rd | 55 +- 20 files changed, 749 insertions(+), 212 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-11 0.2.1
2026-02-14 0.1.6
2026-01-25 0.1.5
2026-01-21 0.1.4
2026-01-09 0.1.3
2025-11-17 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-28 2.1.1
2020-06-06 2.1.0
2020-05-05 2.0.0
2020-03-16 1.2.0
2018-04-09 1.1.1
2018-02-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-07-24 0.1.1
2024-07-21 0.1.0