Title: Numeric Matrices K-NN and PCA Imputation
Description: Fast k-nearest neighbors (K-NN) and principal component
analysis (PCA) imputation algorithms for missing values in epigenetic
data or other high-dimensional numeric matrices. For PCA, a locally
optimal block preconditioned conjugate gradient (LOBPCG) eigensolver
with warm starts of both the eigenblock and search direction is also
supported. Two complementary imputation strategies are available.
Group-wise imputation (e.g., by chromosome) is recommended for
Illumina DNA methylation microarrays (e.g., 450K, EPIC) and other
matrices with groupable columns. A sliding window approach for K-NN or
PCA imputation is recommended only for whole-genome methylation data
such as whole-genome bisulfite sequencing (WGBS) or Enzymatic
Methyl-seq (EM-seq). The package also supports hyperparameter tuning
via repeated cross-validation. The K-NN algorithm is described in:
Hastie, T., Tibshirani, R., Sherlock, G., Eisen, M., Brown, P. and
Botstein, D. (1999) "Imputing Missing Data for Gene Expression
Arra [...truncated...]
Author: Hung Pham [aut, cre, cph] ,
Posit Software, PBC [cph]
Maintainer: Hung Pham <amser.hoanghung@gmail.com>
Diff between slideimp versions 1.1.0 dated 2026-05-01 and 1.2.0 dated 2026-06-16
slideimp-1.1.0/slideimp/src/impute_knn_mlpack.cpp |only slideimp-1.2.0/slideimp/DESCRIPTION | 54 +- slideimp-1.2.0/slideimp/MD5 | 87 ++- slideimp-1.2.0/slideimp/NEWS.md | 26 + slideimp-1.2.0/slideimp/R/RcppExports.R | 8 slideimp-1.2.0/slideimp/R/col_vars.R | 26 - slideimp-1.2.0/slideimp/R/crate.R |only slideimp-1.2.0/slideimp/R/group_imp.R | 193 +++++--- slideimp-1.2.0/slideimp/R/knn_imp.R | 89 +--- slideimp-1.2.0/slideimp/R/mat_miss.R | 7 slideimp-1.2.0/slideimp/R/mean_imp_col.R | 6 slideimp-1.2.0/slideimp/R/pca_imp.R | 157 ++++--- slideimp-1.2.0/slideimp/R/print.R | 57 +- slideimp-1.2.0/slideimp/R/sim_mat.R | 3 slideimp-1.2.0/slideimp/R/slide_imp.R | 172 +++++-- slideimp-1.2.0/slideimp/R/tune_imp.R | 356 ++++++++-------- slideimp-1.2.0/slideimp/R/utils.R | 51 +- slideimp-1.2.0/slideimp/README.md | 168 +++---- slideimp-1.2.0/slideimp/inst/CITATION |only slideimp-1.2.0/slideimp/inst/LICENSE.note |only slideimp-1.2.0/slideimp/man/col_vars.Rd | 19 slideimp-1.2.0/slideimp/man/group_imp.Rd | 95 +--- slideimp-1.2.0/slideimp/man/knn_imp.Rd | 23 - slideimp-1.2.0/slideimp/man/pca_imp.Rd | 110 ++-- slideimp-1.2.0/slideimp/man/slide_imp.Rd | 94 ++-- slideimp-1.2.0/slideimp/man/slideimp-package.Rd | 10 slideimp-1.2.0/slideimp/man/slideimp_resolve_group.Rd | 3 slideimp-1.2.0/slideimp/man/tune_imp.Rd | 71 +-- slideimp-1.2.0/slideimp/src/RcppExports.cpp | 35 - slideimp-1.2.0/slideimp/src/armaSVD.cpp | 234 +++++++--- slideimp-1.2.0/slideimp/src/find_windows.cpp | 70 ++- slideimp-1.2.0/slideimp/src/find_windows_flank.cpp | 78 ++- slideimp-1.2.0/slideimp/src/hybrid_topk_eig.h | 38 - slideimp-1.2.0/slideimp/src/impute_knn_brute.cpp | 74 ++- slideimp-1.2.0/slideimp/src/imputed_value.h | 1 slideimp-1.2.0/slideimp/src/lobpcg_warm.h | 55 ++ slideimp-1.2.0/slideimp/src/mat_stats.cpp | 113 ++++- slideimp-1.2.0/slideimp/tests/testthat/helper.R | 13 slideimp-1.2.0/slideimp/tests/testthat/test-col_vars.R | 6 slideimp-1.2.0/slideimp/tests/testthat/test-crate.R |only slideimp-1.2.0/slideimp/tests/testthat/test-group_imp.R | 141 ++++-- slideimp-1.2.0/slideimp/tests/testthat/test-knn_imp.R | 66 -- slideimp-1.2.0/slideimp/tests/testthat/test-mat_miss.R | 8 slideimp-1.2.0/slideimp/tests/testthat/test-pca_imp.R | 274 +++++++++--- slideimp-1.2.0/slideimp/tests/testthat/test-sim_mat.R | 16 slideimp-1.2.0/slideimp/tests/testthat/test-slide_imp.R | 123 +++-- slideimp-1.2.0/slideimp/tests/testthat/test-tune_imp.R | 184 ++++++-- 47 files changed, 2123 insertions(+), 1291 deletions(-)
Title: Easily Build, Simulate, and Explore Stock-and-Flow Models
Description: Stock-and-flow models are a computational method from the
field of system dynamics. They represent how systems change over time
and are mathematically equivalent to ordinary differential equations.
'sdbuildR' (system dynamics builder) provides an intuitive interface
for constructing stock-and-flow models without requiring extensive
domain knowledge. Models can quickly be simulated and revised,
supporting iterative development. 'sdbuildR' simulates models in 'R'
and 'Julia', and supports computationally intensive ensemble
simulations. Additionally, 'sdbuildR' can import models created in
'Insight Maker' (<https://insightmaker.com/>).
Author: Kyra Caitlin Evers [aut, cre, cph]
Maintainer: Kyra Caitlin Evers <kyra.c.evers@gmail.com>
Diff between sdbuildR versions 1.0.8 dated 2025-11-19 and 2.0.0 dated 2026-06-16
sdbuildR-1.0.8/sdbuildR/R/build_xmile.R |only sdbuildR-1.0.8/sdbuildR/R/custom_func.R |only sdbuildR-1.0.8/sdbuildR/R/globals.R |only sdbuildR-1.0.8/sdbuildR/R/helpers.R |only sdbuildR-1.0.8/sdbuildR/R/insightmaker_to_sfm.R |only sdbuildR-1.0.8/sdbuildR/R/julia_func.R |only sdbuildR-1.0.8/sdbuildR/R/julia_setup.R |only sdbuildR-1.0.8/sdbuildR/R/solvers.R |only sdbuildR-1.0.8/sdbuildR/R/template.R |only sdbuildR-1.0.8/sdbuildR/R/units.R |only sdbuildR-1.0.8/sdbuildR/R/visualise.R |only sdbuildR-1.0.8/sdbuildR/man/as.data.frame.sdbuildR_sim.Rd |only sdbuildR-1.0.8/sdbuildR/man/as.data.frame.sdbuildR_xmile.Rd |only sdbuildR-1.0.8/sdbuildR/man/build.Rd |only sdbuildR-1.0.8/sdbuildR/man/convert_u.Rd |only sdbuildR-1.0.8/sdbuildR/man/debugger.Rd |only sdbuildR-1.0.8/sdbuildR/man/drop_u.Rd |only sdbuildR-1.0.8/sdbuildR/man/find_dependencies.Rd |only sdbuildR-1.0.8/sdbuildR/man/get_build_code.Rd |only sdbuildR-1.0.8/sdbuildR/man/get_regex_time_units.Rd |only sdbuildR-1.0.8/sdbuildR/man/get_regex_units.Rd |only sdbuildR-1.0.8/sdbuildR/man/get_units.Rd |only sdbuildR-1.0.8/sdbuildR/man/header.Rd |only sdbuildR-1.0.8/sdbuildR/man/insightmaker_to_sfm.Rd |only sdbuildR-1.0.8/sdbuildR/man/julia_status.Rd |only sdbuildR-1.0.8/sdbuildR/man/macro.Rd |only sdbuildR-1.0.8/sdbuildR/man/model_units.Rd |only sdbuildR-1.0.8/sdbuildR/man/plot.sdbuildR_ensemble.Rd |only sdbuildR-1.0.8/sdbuildR/man/plot.sdbuildR_sim.Rd |only sdbuildR-1.0.8/sdbuildR/man/plot.sdbuildR_xmile.Rd |only sdbuildR-1.0.8/sdbuildR/man/print.summary.sdbuildR_xmile.Rd |only sdbuildR-1.0.8/sdbuildR/man/sim_specs.Rd |only sdbuildR-1.0.8/sdbuildR/man/simulate.Rd |only sdbuildR-1.0.8/sdbuildR/man/solvers.Rd |only sdbuildR-1.0.8/sdbuildR/man/summary.sdbuildR_xmile.Rd |only sdbuildR-1.0.8/sdbuildR/man/u.Rd |only sdbuildR-1.0.8/sdbuildR/man/unit_prefixes.Rd |only sdbuildR-1.0.8/sdbuildR/man/url_to_IM.Rd |only sdbuildR-1.0.8/sdbuildR/man/use_threads.Rd |only sdbuildR-1.0.8/sdbuildR/man/xmile.Rd |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-assemble_script_julia.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-assemble_script_r.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-build.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-conv_r.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-ensemble.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-helpers.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-insightmaker_to_sfm.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-julia_vs_r.R |only sdbuildR-1.0.8/sdbuildR/tests/testthat/test-visualise.R |only sdbuildR-2.0.0/sdbuildR/DESCRIPTION | 50 sdbuildR-2.0.0/sdbuildR/MD5 | 382 + sdbuildR-2.0.0/sdbuildR/NAMESPACE | 95 sdbuildR-2.0.0/sdbuildR/NEWS.md | 120 sdbuildR-2.0.0/sdbuildR/R/aaa.R |only sdbuildR-2.0.0/sdbuildR/R/assemble_helpers.R |only sdbuildR-2.0.0/sdbuildR/R/assemble_script_julia.R | 1730 ------ sdbuildR-2.0.0/sdbuildR/R/assemble_script_r.R | 776 --- sdbuildR-2.0.0/sdbuildR/R/compile_script.R |only sdbuildR-2.0.0/sdbuildR/R/conv_julia_distributions.R |only sdbuildR-2.0.0/sdbuildR/R/conv_julia_helpers.R |only sdbuildR-2.0.0/sdbuildR/R/conv_julia_statements.R |only sdbuildR-2.0.0/sdbuildR/R/ensemble.R |only sdbuildR-2.0.0/sdbuildR/R/ensemble_julia.R |only sdbuildR-2.0.0/sdbuildR/R/ensemble_r.R |only sdbuildR-2.0.0/sdbuildR/R/export_model.R |only sdbuildR-2.0.0/sdbuildR/R/export_psychomodels.R |only sdbuildR-2.0.0/sdbuildR/R/import_desolve.R |only sdbuildR-2.0.0/sdbuildR/R/import_insightmaker.R |only sdbuildR-2.0.0/sdbuildR/R/insightmaker_conv.R | 2535 ++++++---- sdbuildR-2.0.0/sdbuildR/R/insightmaker_conv_eqn.R | 1587 +----- sdbuildR-2.0.0/sdbuildR/R/interpret_unit_test.R |only sdbuildR-2.0.0/sdbuildR/R/julia_conv_ast.R |only sdbuildR-2.0.0/sdbuildR/R/julia_conv_calls.R |only sdbuildR-2.0.0/sdbuildR/R/julia_conv_eqn.R | 1532 ------ sdbuildR-2.0.0/sdbuildR/R/julia_conv_fallback.R |only sdbuildR-2.0.0/sdbuildR/R/julia_conv_validate.R |only sdbuildR-2.0.0/sdbuildR/R/lang_adapter.R |only sdbuildR-2.0.0/sdbuildR/R/order_equations.R |only sdbuildR-2.0.0/sdbuildR/R/plot.R |only sdbuildR-2.0.0/sdbuildR/R/plot_helpers.R |only sdbuildR-2.0.0/sdbuildR/R/scripts.R |only sdbuildR-2.0.0/sdbuildR/R/sdbuildR_custom_func.R |only sdbuildR-2.0.0/sdbuildR/R/sim_methods.R |only sdbuildR-2.0.0/sdbuildR/R/sim_settings.R |only sdbuildR-2.0.0/sdbuildR/R/simulate.R | 1678 ++---- sdbuildR-2.0.0/sdbuildR/R/stockflow.R |only sdbuildR-2.0.0/sdbuildR/R/summary_stockflow.R |only sdbuildR-2.0.0/sdbuildR/R/sysdata.rda |binary sdbuildR-2.0.0/sdbuildR/R/templates.R |only sdbuildR-2.0.0/sdbuildR/R/update.R |only sdbuildR-2.0.0/sdbuildR/R/use_julia.R |only sdbuildR-2.0.0/sdbuildR/R/utils.R |only sdbuildR-2.0.0/sdbuildR/R/verify.R |only sdbuildR-2.0.0/sdbuildR/R/zzz.R | 30 sdbuildR-2.0.0/sdbuildR/README.md | 175 sdbuildR-2.0.0/sdbuildR/inst/CITATION |only sdbuildR-2.0.0/sdbuildR/inst/Project.toml | 64 sdbuildR-2.0.0/sdbuildR/inst/init.jl | 45 sdbuildR-2.0.0/sdbuildR/inst/setup.jl | 7 sdbuildR-2.0.0/sdbuildR/man/as.data.frame.simulate_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/as.data.frame.stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/as.data.frame.verify_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/auxiliary.Rd |only sdbuildR-2.0.0/sdbuildR/man/change_name.Rd |only sdbuildR-2.0.0/sdbuildR/man/change_type.Rd |only sdbuildR-2.0.0/sdbuildR/man/clean_name.Rd | 14 sdbuildR-2.0.0/sdbuildR/man/compare_models.Rd |only sdbuildR-2.0.0/sdbuildR/man/constant.Rd |only sdbuildR-2.0.0/sdbuildR/man/contains_IM.Rd | 8 sdbuildR-2.0.0/sdbuildR/man/custom_func.Rd |only sdbuildR-2.0.0/sdbuildR/man/dependencies.Rd |only sdbuildR-2.0.0/sdbuildR/man/discard.Rd |only sdbuildR-2.0.0/sdbuildR/man/discard_unit_test.Rd |only sdbuildR-2.0.0/sdbuildR/man/ensemble.Rd | 184 sdbuildR-2.0.0/sdbuildR/man/expit.Rd | 4 sdbuildR-2.0.0/sdbuildR/man/export_model.Rd |only sdbuildR-2.0.0/sdbuildR/man/export_plot.Rd | 35 sdbuildR-2.0.0/sdbuildR/man/figures |only sdbuildR-2.0.0/sdbuildR/man/find_named_arg.Rd |only sdbuildR-2.0.0/sdbuildR/man/flow.Rd |only sdbuildR-2.0.0/sdbuildR/man/has_internet.Rd | 2 sdbuildR-2.0.0/sdbuildR/man/head.simulate_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/head.verify_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/hill.Rd |only sdbuildR-2.0.0/sdbuildR/man/import_desolve.Rd |only sdbuildR-2.0.0/sdbuildR/man/import_insightmaker.Rd |only sdbuildR-2.0.0/sdbuildR/man/indexof.Rd | 8 sdbuildR-2.0.0/sdbuildR/man/insightmaker_to_json.Rd |only sdbuildR-2.0.0/sdbuildR/man/install_julia_env.Rd | 20 sdbuildR-2.0.0/sdbuildR/man/interpret.Rd |only sdbuildR-2.0.0/sdbuildR/man/length_IM.Rd | 4 sdbuildR-2.0.0/sdbuildR/man/logistic.Rd | 14 sdbuildR-2.0.0/sdbuildR/man/logit.Rd | 4 sdbuildR-2.0.0/sdbuildR/man/lookup.Rd |only sdbuildR-2.0.0/sdbuildR/man/maybe_wrap.Rd |only sdbuildR-2.0.0/sdbuildR/man/meta.Rd |only sdbuildR-2.0.0/sdbuildR/man/needs_parens.Rd |only sdbuildR-2.0.0/sdbuildR/man/nonnegative.Rd | 6 sdbuildR-2.0.0/sdbuildR/man/op_precedence.Rd |only sdbuildR-2.0.0/sdbuildR/man/plot.ensemble_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/plot.simulate_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/plot.stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/plot.verify_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/print.compare_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/print.simulate_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/print.stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/print.summary_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/pulse.Rd | 14 sdbuildR-2.0.0/sdbuildR/man/ramp.Rd | 14 sdbuildR-2.0.0/sdbuildR/man/rbool.Rd | 4 sdbuildR-2.0.0/sdbuildR/man/rdist.Rd | 4 sdbuildR-2.0.0/sdbuildR/man/rem_mod.Rd | 4 sdbuildR-2.0.0/sdbuildR/man/round_IM.Rd | 6 sdbuildR-2.0.0/sdbuildR/man/saveat_func.Rd | 8 sdbuildR-2.0.0/sdbuildR/man/seasonal.Rd | 10 sdbuildR-2.0.0/sdbuildR/man/sim_methods.Rd |only sdbuildR-2.0.0/sdbuildR/man/sim_settings.Rd |only sdbuildR-2.0.0/sdbuildR/man/simulate.stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/step.Rd | 14 sdbuildR-2.0.0/sdbuildR/man/stock.Rd |only sdbuildR-2.0.0/sdbuildR/man/stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/summary.simulate_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/summary.stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/tail.simulate_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/tail.verify_stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/unit_test.Rd |only sdbuildR-2.0.0/sdbuildR/man/unit_tests.Rd |only sdbuildR-2.0.0/sdbuildR/man/update.stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/man/url_to_insightmaker.Rd |only sdbuildR-2.0.0/sdbuildR/man/use_julia.Rd | 26 sdbuildR-2.0.0/sdbuildR/man/verify.Rd |only sdbuildR-2.0.0/sdbuildR/man/verify.stockflow.Rd |only sdbuildR-2.0.0/sdbuildR/tests/testthat/_snaps |only sdbuildR-2.0.0/sdbuildR/tests/testthat/helper.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-assembled_scripts.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-cache-invalidation.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-change_name.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-compare_models.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-conv_julia.R | 747 +- sdbuildR-2.0.0/sdbuildR/tests/testthat/test-conv_julia_distributions.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-custom_func-nse.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-custom_func.R | 573 -- sdbuildR-2.0.0/sdbuildR/tests/testthat/test-edge-cases.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-ensemble-jl.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-ensemble-r.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-export_model.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-export_psychomodels.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-import_desolve.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-insightmaker.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-insightmaker_conv_eqn.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-interpret_unit_test.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-julia_conv_ast.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-language-switching.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-layout-invariants.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-meta.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-nse.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-order_equations.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-plot_ensemble_stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-plot_helpers.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-plot_simulate_stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-plot_stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-plot_verify_stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-prep-functions.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-print_simulate_stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-sdbuildR_custom_func.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-sim_methods.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-sim_settings.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-simulate.R | 438 + sdbuildR-2.0.0/sdbuildR/tests/testthat/test-stockflow.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-summary.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-templates.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-update.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-use_julia.R | 119 sdbuildR-2.0.0/sdbuildR/tests/testthat/test-utils.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/test-verify.R |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/abm |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/Balancing_an_Inverted_Pendulum.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/C_N_bacteria_DOM.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/Kepler_Ellipsen.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/Spring_Mass_Model.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/Stanford_Prison_Experiment.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/cld.InsightMaker |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/cld.json |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/population.InsightMaker |only sdbuildR-2.0.0/sdbuildR/tests/testthat/testdata/insightmaker/cran/population.json |only 225 files changed, 5010 insertions(+), 8080 deletions(-)
Title: Unicode and Punycode Domain Name Processing
Description: High-performance Unicode and Punycode encoding/decoding for
internationalized domain names. Provides RFC 3492 compliant conversion
functions with a focus on URL processing and data analysis workflows.
Addresses limitations in existing R packages for handling international
domain names in web scraping and URL parsing applications.
Author: Bart Turczynski [aut, cre]
Maintainer: Bart Turczynski <bartek+punycoder@turczynski.pl>
Diff between punycoder versions 1.0.0 dated 2026-06-11 and 1.1.0 dated 2026-06-16
DESCRIPTION | 9 +- MD5 | 40 +++++---- NAMESPACE | 2 NEWS.md | 23 +++-- R/RcppExports.R | 8 + R/normalize.R |only R/validators.R | 6 - README.md | 17 ++- inst/doc/punycoder-intro.R | 10 +- inst/doc/punycoder-intro.Rmd | 10 +- inst/doc/punycoder-intro.html | 14 +-- man/host_normalize.Rd |only man/normalization_profile_info.Rd |only man/punycoder-package.Rd | 1 src/RcppExports.cpp | 22 +++++ src/exports.cpp | 35 ++++++++ src/init.c | 4 src/punycoder_nfc.cpp |only src/punycoder_nfc.h |only src/punycoder_normalize.cpp |only src/punycoder_normalize.h |only src/unicode_tables_16_0_0.cpp |only src/unicode_tables_16_0_0.h |only tests/testthat/test-backends.R | 165 ++++++++++++++++++++++++++++++-------- tests/testthat/test-normalize.R |only vignettes/punycoder-intro.Rmd | 10 +- 26 files changed, 290 insertions(+), 86 deletions(-)
Title: Demographic Modelling Using Projection Matrices
Description: Tools for modelling populations and demography using matrix projection models,
with deterministic and stochastic model implementations. Includes population projection,
indices of short- and long-term population size and growth, perturbation analysis,
convergence to stability or stationarity, and diagnostic and manipulation tools.
Author: Iain Stott [aut, cre],
Dave Hodgson [aut],
Stuart Townley [aut],
Stephen Ellner [ctb]
Maintainer: Iain Stott <iainmstott@gmail.com>
Diff between popdemo versions 1.3-3 dated 2026-03-09 and 1.3-4 dated 2026-06-16
ChangeLog | 1 DESCRIPTION | 6 +- MD5 | 16 +++--- R/popdemo-onAttach.R | 2 inst/doc/popdemo.R | 4 - inst/doc/popdemo.Rmd | 4 - inst/doc/popdemo.html | 132 +++++++++++++++++++++++++------------------------- vignettes/imgs |only vignettes/popdemo.Rmd | 4 - 9 files changed, 86 insertions(+), 83 deletions(-)
Title: Multivariate Outlier Detection Methods
Description: Provides methods for detecting multivariate outliers in numeric datasets. The package implements classical Mahalanobis distance, robust Minimum Covariance Determinant (MCD), and Principal Component Analysis (PCA)-based approaches for outlier detection. The methodology is informed by Aggarwal (2017) <doi:10.1007/978-3-319-47578-3> and Grentzelos, Caroni and Barranco-Chamorro (2020) <doi:10.1002/cmm4.1129>. Visualization functions are included to aid interpretation of detected outliers. Mahalanobis distance calculations are accelerated using 'C++' through 'Rcpp'.
Author: Senuri Yasara [aut, cre],
Pavanthi Sudasinghe [aut]
Maintainer: Senuri Yasara <senuriyasara@gmail.com>
Diff between MOutliers versions 0.1.1 dated 2026-06-15 and 0.1.2 dated 2026-06-16
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/plot_outliers.R | 3 +++ man/plot_outliers.Rd | 4 ++++ 4 files changed, 14 insertions(+), 7 deletions(-)
Title: Ultra-Fast Analysis of Sparse DNA Methylome via Recurrent
Pattern Encoding
Description: Methods for analyzing DNA methylation data via Most Recurrent Methylation Patterns (MRMPs). Supports cell-type annotation, spatial deconvolution, unsupervised clustering, and cancer cell-of-origin inference. Includes C-backed summaries for YAME “.cg/.cm” files (overlap counts, log2 odds ratios, beta/depth aggregation), an XGBoost classifier, NNLS deconvolution, and plotting utilities. Scales to large spatial and single-cell methylomes and is robust to extreme sparsity.
Author: Hongxiang Fu [aut, cre] ,
Wanding Zhou [cph, fnd],
The SAMtools/HTSlib authors [ctb, cph] ,
Attractive Chaos [ctb, cph] )
Maintainer: Hongxiang Fu <fhx@seas.upenn.edu>
Diff between MethScope versions 1.0.2 dated 2026-06-13 and 1.0.3 dated 2026-06-16
DESCRIPTION | 6 +-- MD5 | 14 ++++---- README.md | 18 +++++++++++ inst/doc/MethScope-Tutorial.R | 10 +++++- inst/doc/MethScope-Tutorial.Rmd | 13 ++++++-- inst/doc/MethScope-Tutorial.html | 62 +++++++++++++++++++++------------------ src/Makevars | 2 - vignettes/MethScope-Tutorial.Rmd | 13 ++++++-- 8 files changed, 91 insertions(+), 47 deletions(-)
Title: Classifications for Statistics Norway
Description: Functions to search, retrieve, apply and update classification
standards and code lists using Statistics Norway's API
<https://www.ssb.no/klass> from the system 'KLASS'. Retrieves classifications
by date with options to choose language, hierarchical level and formatting.
Author: Susie Jentoft [aut],
Diana-Cristina Iancu [aut],
Lisa Li [aut],
Oeyvind I. Berntsen [aut, cre],
Statistics Norway [cph]
Maintainer: Oeyvind I. Berntsen <Oyvind.Berntsen@ssb.no>
Diff between klassR versions 1.0.5 dated 2026-02-26 and 1.0.6 dated 2026-06-16
DESCRIPTION | 20 LICENSE | 2 MD5 | 130 +-- NAMESPACE | 36 NEWS.md | 91 +- R/Convert_table.R | 42 - R/Hent_data.R | 880 +++++++++++------------ R/KLASS.R | 444 +++++------ R/Klass_list.R | 682 ++++++++--------- R/Levels.R | 92 +- R/UpdateKlass-graph-build.R | 868 +++++++++++----------- R/UpdateKlass-graph-navigate.R | 412 +++++----- R/UpdateKlass.R | 415 +++++----- R/checkLevel.R | 38 R/data.R | 72 - R/find_equivalents.R |only R/format.R | 152 +-- man/CheckDate.Rd | 30 man/ConvertTable.Rd | 58 - man/GetBaseUrl.Rd | 30 man/GetNums.Rd | 36 man/GetUrl.Rd | 36 man/GetUrl2.Rd | 40 - man/Levels.Rd | 44 - man/MakeChar.Rd | 36 man/MakeUrl.Rd | 84 +- man/apply_klass.Rd | 134 +-- man/check_connect.Rd | 40 - man/correspond_list.Rd | 62 - man/count_neighbors.Rd | 50 - man/find_dates.Rd | 64 - man/find_equivalent_codes.Rd |only man/find_equivalent_nodes.Rd |only man/find_name.Rd | 48 - man/find_variant_from.Rd | 52 - man/find_variant_to.Rd | 52 - man/formattering.Rd | 44 - man/formattering_kommune.Rd | 38 man/formattering_nace.Rd | 36 man/get_family.Rd | 50 - man/get_klass.Rd | 146 +-- man/get_name.Rd | 46 - man/get_variant_name.Rd | 34 man/get_version.Rd | 62 - man/is_combined.Rd | 80 +- man/is_split.Rd | 54 - man/klass_131_1964_graph.Rd | 32 man/klass_131_2020_graph.Rd | 32 man/klass_131_graph.Rd | 32 man/klass_graph.Rd | 76 - man/klass_node.Rd | 74 - man/klassdata.Rd | 50 - man/levelCheck.Rd | 49 - man/list_family.Rd | 58 - man/list_klass.Rd | 54 - man/search_klass.Rd | 54 - man/stop_quietly.Rd | 28 man/update_code.Rd | 140 +-- man/update_klass.Rd | 218 ++--- man/update_klass_node.Rd | 70 - tests/testthat.R | 8 tests/testthat/test-UpdateKlass-graph-navigate.R | 88 +- tests/testthat/test-UpdateKlass.R | 414 +++++----- tests/testthat/test_ApplyKlass.R | 412 +++++----- tests/testthat/test_GetKlass.R | 336 ++++---- tests/testthat/test_ListKlass.R | 50 - tests/testthat/test_find_equivalent_codes.R |only tests/testthat/test_formattering.R | 44 - 68 files changed, 4101 insertions(+), 4080 deletions(-)
Title: Discrete Choice and Competitive Reactions: End-to-End Simulation
Description: Although discrete choice (choice-based conjoint) analysis has become a widely used
technique for the elicitation of consumer preferences and hence a foundation for product
design, to the best of our knowledge, there exists neither free and open-source nor
commercial software that covers the game-theoretic simulation of competitive reactions among
firms based on discrete choice models to improve decision making beyond traditional product
(line) optimization. The package does not only provide functions to fill this gap but
comprises an entire simulation pipeline including the upstream processes of discrete choice
analysis itself. It ranges from preference generation, choice design, design assessment,
error and response simulation, through hierarchical Bayesian estimation of mixed logit models
as well as convergence and model assessment, to Nash equilibrium computation. Doing so, it
partly draws from established packages concerned with discrete choice analysis. While its
structure general [...truncated...]
Author: Jan H. R. Dressler [aut, cre, cph],
Peter Kurz [ths],
Winfried J. Steiner [ths]
Maintainer: Jan H. R. Dressler <jhrd13@tu-clausthal.de>
Diff between cash versions 1.0.2 dated 2026-06-09 and 1.0.3 dated 2026-06-16
DESCRIPTION | 9 +++++---- MD5 | 35 ++++++++++++++++++----------------- R/B_prefgen.R | 3 +++ R/C_choicedes.R | 13 ++++++++----- R/D_responsesim.R | 3 +++ R/E_hbmxlest.R | 3 +++ R/F_designeval.R | 3 +++ R/G_modeleval.R | 35 ++++++++++++++++++++--------------- R/H_precomputeM.R | 5 ++++- R/I_preoptandnashgame.R | 3 +++ inst |only man/B_prefgen.Rd | 3 +++ man/C_choicedes.Rd | 3 +++ man/D_responsesim.Rd | 3 +++ man/E_hbmxlest.Rd | 3 +++ man/F_designeval.Rd | 3 +++ man/G_modeleval.Rd | 3 +++ man/H_precomputeM.Rd | 3 +++ man/I_preoptandnashgame.Rd | 3 +++ 19 files changed, 94 insertions(+), 42 deletions(-)
Title: Forecasting with Bayesian Panel Vector Autoregressions
Description: Provides Bayesian estimation and forecasting of dynamic panel data using
Bayesian Panel Vector Autoregressions with hierarchical prior distributions
following the specification by Sanchez-Martinez & Woźniak (2026) <doi:10.48550/arXiv.2606.14143>.
The models include country-specific Vector Autoregressions (VARs) that share a global prior
distribution that extend the model by Jarociński (2010) <doi:10.1002/jae.1082>.
Under this prior expected value, each country's system follows
a global VAR with country-invariant parameters. Further flexibility is
provided by the hierarchical prior structure that retains the Minnesota prior
interpretation for the global VAR and features estimated prior covariance
matrices, shrinkage, and persistence levels. Bayesian forecasting is developed
for models including exogenous variables, allowing conditional forecasts given
the future trajectories of some variables and restricted forecasts assuring
that rates are forecasted to stay positive an [...truncated...]
Author: Tomasz Wozniak [aut, cre] ,
Miguel Sanchez-Martinez [ctb],
International Labour Organization [cph]
Maintainer: Tomasz Wozniak <wozniak.tom@pm.me>
Diff between bpvars versions 1.0 dated 2025-12-11 and 2.0 dated 2026-06-16
bpvars-1.0/bpvars/src/rtmvtnorm.cpp |only bpvars-1.0/bpvars/src/rtmvtnorm.h |only bpvars-2.0/bpvars/DESCRIPTION | 40 - bpvars-2.0/bpvars/MD5 | 197 +++-- bpvars-2.0/bpvars/NAMESPACE | 2 bpvars-2.0/bpvars/NEWS.md | 5 bpvars-2.0/bpvars/R/bpvars-package.R | 25 bpvars-2.0/bpvars/R/compute_forecast_performance.R | 8 bpvars-2.0/bpvars/R/compute_variance_decompositions.R | 18 bpvars-2.0/bpvars/R/country_grouping_incomegroup.R | 2 bpvars-2.0/bpvars/R/country_grouping_region.R | 2 bpvars-2.0/bpvars/R/country_grouping_subregionbroad.R | 2 bpvars-2.0/bpvars/R/country_grouping_subregiondetailed.R | 2 bpvars-2.0/bpvars/R/estimate.BVARGROUPPANEL.R | 7 bpvars-2.0/bpvars/R/estimate.BVARGROUPPRIORPANEL.R | 7 bpvars-2.0/bpvars/R/estimate.bvarPANEL.R | 7 bpvars-2.0/bpvars/R/estimate.bvars.R | 7 bpvars-2.0/bpvars/R/forecast.R | 28 bpvars-2.0/bpvars/R/forecast_performance.R | 7 bpvars-2.0/bpvars/R/ilo_conditional_forecasts.R |only bpvars-2.0/bpvars/R/ilo_dynamic_panel.R | 2 bpvars-2.0/bpvars/R/ilo_dynamic_panel_missing.R | 2 bpvars-2.0/bpvars/R/ilo_exogenous_forecasts.R | 10 bpvars-2.0/bpvars/R/ilo_exogenous_variables.R | 2 bpvars-2.0/bpvars/R/ilo_exogenous_variables_missing.R | 2 bpvars-2.0/bpvars/R/plot.R | 2 bpvars-2.0/bpvars/R/summary.R | 4 bpvars-2.0/bpvars/README.md | 82 +- bpvars-2.0/bpvars/build/partial.rdb |binary bpvars-2.0/bpvars/build/vignette.rds |only bpvars-2.0/bpvars/data/country_grouping_incomegroup.rda |binary bpvars-2.0/bpvars/data/country_grouping_region.rda |binary bpvars-2.0/bpvars/data/country_grouping_subregionbroad.rda |binary bpvars-2.0/bpvars/data/country_grouping_subregiondetailed.rda |binary bpvars-2.0/bpvars/data/ilo_conditional_forecasts.rda |only bpvars-2.0/bpvars/data/ilo_dynamic_panel.rda |binary bpvars-2.0/bpvars/data/ilo_dynamic_panel_missing.rda |binary bpvars-2.0/bpvars/data/ilo_exogenous_forecasts.rda |binary bpvars-2.0/bpvars/data/ilo_exogenous_variables.rda |binary bpvars-2.0/bpvars/data/ilo_exogenous_variables_missing.rda |binary bpvars-2.0/bpvars/inst/CITATION |only bpvars-2.0/bpvars/inst/doc |only bpvars-2.0/bpvars/inst/include/bpvars_RcppExports.h | 4 bpvars-2.0/bpvars/inst/tinytest/test_forecast.R | 5 bpvars-2.0/bpvars/man/bpvars-package.Rd | 23 bpvars-2.0/bpvars/man/compute_forecast_performance.ForecastsPANELpoos.Rd | 7 bpvars-2.0/bpvars/man/compute_forecast_performance.Rd | 7 bpvars-2.0/bpvars/man/compute_variance_decompositions.PosteriorBVARGROUPPANEL.Rd | 6 bpvars-2.0/bpvars/man/compute_variance_decompositions.PosteriorBVARPANEL.Rd | 6 bpvars-2.0/bpvars/man/compute_variance_decompositions.PosteriorBVARs.Rd | 6 bpvars-2.0/bpvars/man/country_grouping_incomegroup.Rd | 2 bpvars-2.0/bpvars/man/country_grouping_region.Rd | 2 bpvars-2.0/bpvars/man/country_grouping_subregionbroad.Rd | 2 bpvars-2.0/bpvars/man/country_grouping_subregiondetailed.Rd | 2 bpvars-2.0/bpvars/man/estimate.BVARGROUPPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.BVARGROUPPRIORPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.BVARPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.BVARs.Rd | 7 bpvars-2.0/bpvars/man/estimate.PosteriorBVARGROUPPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.PosteriorBVARGROUPPRIORPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.PosteriorBVARPANEL.Rd | 7 bpvars-2.0/bpvars/man/estimate.PosteriorBVARs.Rd | 7 bpvars-2.0/bpvars/man/forecast.PosteriorBVARGROUPPANEL.Rd | 10 bpvars-2.0/bpvars/man/forecast.PosteriorBVARGROUPPRIORPANEL.Rd | 10 bpvars-2.0/bpvars/man/forecast.PosteriorBVARPANEL.Rd | 10 bpvars-2.0/bpvars/man/forecast.PosteriorBVARs.Rd | 10 bpvars-2.0/bpvars/man/forecast_poos_recursively.BVARGROUPPANEL.Rd | 7 bpvars-2.0/bpvars/man/forecast_poos_recursively.BVARGROUPPRIORPANEL.Rd | 7 bpvars-2.0/bpvars/man/forecast_poos_recursively.BVARPANEL.Rd | 7 bpvars-2.0/bpvars/man/forecast_poos_recursively.BVARs.Rd | 7 bpvars-2.0/bpvars/man/forecast_poos_recursively.Rd | 7 bpvars-2.0/bpvars/man/ilo_conditional_forecasts.Rd |only bpvars-2.0/bpvars/man/ilo_dynamic_panel.Rd | 2 bpvars-2.0/bpvars/man/ilo_dynamic_panel_missing.Rd | 2 bpvars-2.0/bpvars/man/ilo_exogenous_forecasts.Rd | 10 bpvars-2.0/bpvars/man/ilo_exogenous_variables.Rd | 2 bpvars-2.0/bpvars/man/ilo_exogenous_variables_missing.Rd | 2 bpvars-2.0/bpvars/man/plot.ForecastsPANEL.Rd | 2 bpvars-2.0/bpvars/man/reexports.Rd | 2 bpvars-2.0/bpvars/man/specify_bvarGroupPANEL.Rd | 177 ++--- bpvars-2.0/bpvars/man/specify_bvarGroupPriorPANEL.Rd | 316 ++++----- bpvars-2.0/bpvars/man/specify_bvarPANEL.Rd | 335 ++++------ bpvars-2.0/bpvars/man/specify_bvars.Rd | 335 ++++------ bpvars-2.0/bpvars/man/specify_panel_data_matrices.Rd | 128 +-- bpvars-2.0/bpvars/man/specify_poosf_exercise.Rd | 119 +-- bpvars-2.0/bpvars/man/specify_posterior_bvarGroupPANEL.Rd | 99 +- bpvars-2.0/bpvars/man/specify_posterior_bvarGroupPriorPANEL.Rd | 99 +- bpvars-2.0/bpvars/man/specify_posterior_bvarPANEL.Rd | 145 ++-- bpvars-2.0/bpvars/man/specify_posterior_bvars.Rd | 145 ++-- bpvars-2.0/bpvars/man/specify_prior_bvarPANEL.Rd | 160 ++-- bpvars-2.0/bpvars/man/specify_prior_bvars.Rd | 154 ++-- bpvars-2.0/bpvars/man/specify_starting_values_bvarGroupPANEL.Rd | 219 +++--- bpvars-2.0/bpvars/man/specify_starting_values_bvarGroupPriorPANEL.Rd | 208 +++--- bpvars-2.0/bpvars/man/specify_starting_values_bvarPANEL.Rd | 198 ++--- bpvars-2.0/bpvars/man/specify_starting_values_bvars.Rd | 192 ++--- bpvars-2.0/bpvars/man/summary.ForecastsPANEL.Rd | 4 bpvars-2.0/bpvars/src/Makevars | 2 bpvars-2.0/bpvars/src/Makevars.win | 2 bpvars-2.0/bpvars/src/RcppExports.cpp | 144 ++-- bpvars-2.0/bpvars/src/forecast_panel.cpp | 36 - bpvars-2.0/bpvars/src/forecast_panel.h | 10 bpvars-2.0/bpvars/src/forecast_performance.cpp | 1 bpvars-2.0/bpvars/vignettes |only 103 files changed, 2042 insertions(+), 1883 deletions(-)
Title: Bayesian Aggregate Treatment Effects
Description: Running and comparing meta-analyses of data with hierarchical
Bayesian models in Stan, including convenience functions for formatting
data, plotting and pooling measures specific to meta-analysis. This implements many models
from Meager (2019) <doi:10.1257/app.20170299>.
Author: Witold Wiecek [cre, aut],
Rachael Meager [aut],
Brice Green [ctb] ,
Danny Toomey [ctb] ,
Trustees of Columbia University [cph]
Maintainer: Witold Wiecek <witold.wiecek@gmail.com>
Diff between baggr versions 0.8 dated 2026-02-10 and 0.8.2 dated 2026-06-16
baggr-0.8.2/baggr/DESCRIPTION | 8 baggr-0.8.2/baggr/MD5 | 164 - baggr-0.8.2/baggr/NAMESPACE | 2 baggr-0.8.2/baggr/NEWS.md | 33 baggr-0.8.2/baggr/R/auto_prior.R | 72 baggr-0.8.2/baggr/R/baggr-package.R | 4 baggr-0.8.2/baggr/R/baggr.R | 96 baggr-0.8.2/baggr/R/baggr_compare.R | 8 baggr-0.8.2/baggr/R/binary_to_individual.R | 4 baggr-0.8.2/baggr/R/check_cols.R | 22 baggr-0.8.2/baggr/R/convert_inputs.R | 169 + baggr-0.8.2/baggr/R/effect_draw.R | 26 baggr-0.8.2/baggr/R/fixed_effects.R | 2 baggr-0.8.2/baggr/R/forest_plot.R | 2 baggr-0.8.2/baggr/R/funnel.R | 11 baggr-0.8.2/baggr/R/group_effects.R | 68 baggr-0.8.2/baggr/R/helpers.R | 10 baggr-0.8.2/baggr/R/labbe.R | 2 baggr-0.8.2/baggr/R/loocv.R | 6 baggr-0.8.2/baggr/R/pooling_metrics.R | 10 baggr-0.8.2/baggr/R/predict.R |only baggr-0.8.2/baggr/R/prepare_ma.R | 6 baggr-0.8.2/baggr/R/print_baggr.R | 4 baggr-0.8.2/baggr/R/prior_dist.R | 4 baggr-0.8.2/baggr/R/selection.R | 17 baggr-0.8.2/baggr/R/trt_effects.R | 4 baggr-0.8.2/baggr/R/vitamin_a.R |only baggr-0.8.2/baggr/build/vignette.rds |binary baggr-0.8.2/baggr/data/vitamin_a.rda |only baggr-0.8.2/baggr/inst/doc/baggr.R | 8 baggr-0.8.2/baggr/inst/doc/baggr.Rmd | 33 baggr-0.8.2/baggr/inst/doc/baggr.html | 257 +- baggr-0.8.2/baggr/inst/doc/baggr_binary.Rmd | 7 baggr-0.8.2/baggr/inst/doc/baggr_binary.html | 38 baggr-0.8.2/baggr/inst/doc/baggr_selection.Rmd |only baggr-0.8.2/baggr/inst/doc/baggr_selection.html |only baggr-0.8.2/baggr/inst/stan/functions/selection.stan | 121 - baggr-0.8.2/baggr/inst/stan/logit.stan | 5 baggr-0.8.2/baggr/inst/stan/mutau.stan | 26 baggr-0.8.2/baggr/inst/stan/mutau_full.stan | 5 baggr-0.8.2/baggr/inst/stan/rubin.stan | 70 baggr-0.8.2/baggr/inst/stan/rubin_full.stan | 8 baggr-0.8.2/baggr/man/baggr-package.Rd | 4 baggr-0.8.2/baggr/man/baggr.Rd | 69 baggr-0.8.2/baggr/man/baggr_compare.Rd | 8 baggr-0.8.2/baggr/man/binary_to_individual.Rd | 4 baggr-0.8.2/baggr/man/convert_inputs.Rd | 158 - baggr-0.8.2/baggr/man/effect_draw.Rd | 20 baggr-0.8.2/baggr/man/effect_plot.Rd | 6 baggr-0.8.2/baggr/man/fixed_effects.Rd | 2 baggr-0.8.2/baggr/man/forest_plot.Rd | 2 baggr-0.8.2/baggr/man/funnel_plot.Rd | 9 baggr-0.8.2/baggr/man/labbe.Rd | 2 baggr-0.8.2/baggr/man/loocv.Rd | 4 baggr-0.8.2/baggr/man/mutau_cor.Rd | 2 baggr-0.8.2/baggr/man/pooling.Rd | 10 baggr-0.8.2/baggr/man/predict.baggr.Rd |only baggr-0.8.2/baggr/man/prepare_ma.Rd | 6 baggr-0.8.2/baggr/man/prepare_prior.Rd | 18 baggr-0.8.2/baggr/man/print.baggr.Rd | 2 baggr-0.8.2/baggr/man/priors.Rd | 4 baggr-0.8.2/baggr/man/selection.Rd | 18 baggr-0.8.2/baggr/man/treatment_effect.Rd | 2 baggr-0.8.2/baggr/man/vitamin_a.Rd |only baggr-0.8.2/baggr/src/Makevars |only baggr-0.8.2/baggr/src/stanExports_logit.h | 15 baggr-0.8.2/baggr/src/stanExports_mutau.h | 463 ++-- baggr-0.8.2/baggr/src/stanExports_rubin.h | 1116 ++++++---- baggr-0.8.2/baggr/src/stanExports_rubin_full.h | 33 baggr-0.8.2/baggr/tests/testthat/Rplots.pdf |binary baggr-0.8.2/baggr/tests/testthat/test_binary.R | 837 ++++--- baggr-0.8.2/baggr/tests/testthat/test_full.R | 195 + baggr-0.8.2/baggr/tests/testthat/test_group_effects_meta_regression_full.R |only baggr-0.8.2/baggr/tests/testthat/test_helpers.R | 6 baggr-0.8.2/baggr/tests/testthat/test_mutau.R | 32 baggr-0.8.2/baggr/tests/testthat/test_mutau_logpd.R |only baggr-0.8.2/baggr/tests/testthat/test_onerow.R | 8 baggr-0.8.2/baggr/tests/testthat/test_prior.R | 59 baggr-0.8.2/baggr/tests/testthat/test_rubin.R | 923 ++++---- baggr-0.8.2/baggr/tests/testthat/test_selection_and_validation.R | 137 + baggr-0.8.2/baggr/tests/testthat/test_vitamin_a.R |only baggr-0.8.2/baggr/tools |only baggr-0.8.2/baggr/vignettes/baggr.Rmd | 33 baggr-0.8.2/baggr/vignettes/baggr.bib | 65 baggr-0.8.2/baggr/vignettes/baggr_binary.Rmd | 7 baggr-0.8.2/baggr/vignettes/baggr_binary.Rmd.orig | 7 baggr-0.8.2/baggr/vignettes/baggr_selection.Rmd |only baggr-0.8.2/baggr/vignettes/baggr_selection.Rmd.orig |only baggr-0.8.2/baggr/vignettes/fig/selection-unnamed-chunk-3-1.png |only baggr-0.8.2/baggr/vignettes/recompute_vigs.R | 1 baggr-0.8/baggr/R/prior_summary.R |only 91 files changed, 3566 insertions(+), 2053 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] ,
Posit Software, PBC [cph, fnd],
Christophe Dervieux [ctb] ,
Devon Ryan [ctb] ,
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.59 dated 2026-03-28 and 0.60 dated 2026-06-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/install.R | 10 +++++++++- R/platforms.R | 4 ++-- 4 files changed, 17 insertions(+), 9 deletions(-)
Title: A Simple HTTP Server to Serve Static Files or Dynamic Documents
Description: Start an HTTP server in R to serve static files, or dynamic
documents that can be converted to HTML files (e.g., R Markdown) under a
given directory.
Author: Yihui Xie [aut, cre] ,
Carson Sievert [ctb],
Jesse Anderson [ctb],
Ramnath Vaidyanathan [ctb],
Romain Lesur [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between servr versions 0.32 dated 2024-10-04 and 0.33 dated 2026-06-16
DESCRIPTION | 15 +++-- MD5 | 12 ++-- R/static.R | 130 ++++++++++++++++++--------------------------------- R/utils.R | 34 ------------- man/create_server.Rd | 9 +-- man/httd.Rd | 5 - man/server_config.Rd | 6 +- 7 files changed, 70 insertions(+), 141 deletions(-)
Title: Build and Raytrace 3D Scenes
Description: Render scenes using pathtracing. Build 3D scenes out of spheres, cubes, planes, disks, triangles, cones, curves, line segments, cylinders, ellipsoids, and 3D models in the 'Wavefront' OBJ file format or the PLY Polygon File Format. Supports several material types, textures, multicore rendering, and tone-mapping. Based on the "Ray Tracing in One Weekend" book series. Peter Shirley (2018) <https://raytracing.github.io>.
Author: Tyler Morgan-Wall [aut, cph, cre] ,
Syoyo Fujita [ctb, cph],
Vilya Harvey [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayrender versions 0.38.10 dated 2025-02-28 and 0.41.3 dated 2026-06-16
rayrender-0.38.10/rayrender/R/save_png.R |only rayrender-0.38.10/rayrender/R/utils-pipe.R |only rayrender-0.38.10/rayrender/configure.ac |only rayrender-0.38.10/rayrender/man/pipe.Rd |only rayrender-0.38.10/rayrender/man/run_documentation.Rd |only rayrender-0.38.10/rayrender/man/save_png.Rd |only rayrender-0.38.10/rayrender/src/Makevars.win |only rayrender-0.38.10/rayrender/src/PreviewDisplay.cpp |only rayrender-0.38.10/rayrender/src/PreviewDisplay.h |only rayrender-0.38.10/rayrender/src/RayMatrix.cpp |only rayrender-0.38.10/rayrender/src/RayMatrix.h |only rayrender-0.38.10/rayrender/src/aabb.cpp |only rayrender-0.38.10/rayrender/src/aabb.h |only rayrender-0.38.10/rayrender/src/adaptivesampler.cpp |only rayrender-0.38.10/rayrender/src/adaptivesampler.h |only rayrender-0.38.10/rayrender/src/animatedtransform.cpp |only rayrender-0.38.10/rayrender/src/animatedtransform.h |only rayrender-0.38.10/rayrender/src/assert.cpp |only rayrender-0.38.10/rayrender/src/assert.h |only rayrender-0.38.10/rayrender/src/bounds.h |only rayrender-0.38.10/rayrender/src/box.cpp |only rayrender-0.38.10/rayrender/src/box.h |only rayrender-0.38.10/rayrender/src/buildscene.cpp |only rayrender-0.38.10/rayrender/src/buildscene.h |only rayrender-0.38.10/rayrender/src/bvh.cpp |only rayrender-0.38.10/rayrender/src/bvh.h |only rayrender-0.38.10/rayrender/src/calcnormals.cpp |only rayrender-0.38.10/rayrender/src/calcnormals.h |only rayrender-0.38.10/rayrender/src/calctangents.cpp |only rayrender-0.38.10/rayrender/src/calctangents.h |only rayrender-0.38.10/rayrender/src/camera.cpp |only rayrender-0.38.10/rayrender/src/camera.h |only rayrender-0.38.10/rayrender/src/color.cpp |only rayrender-0.38.10/rayrender/src/color.h |only rayrender-0.38.10/rayrender/src/constant.cpp |only rayrender-0.38.10/rayrender/src/constant.h |only rayrender-0.38.10/rayrender/src/csg.cpp |only rayrender-0.38.10/rayrender/src/csg.h |only rayrender-0.38.10/rayrender/src/curve.cpp |only rayrender-0.38.10/rayrender/src/curve.h |only rayrender-0.38.10/rayrender/src/cylinder.cpp |only rayrender-0.38.10/rayrender/src/cylinder.h |only rayrender-0.38.10/rayrender/src/debug.cpp |only rayrender-0.38.10/rayrender/src/debug.h |only rayrender-0.38.10/rayrender/src/disk.cpp |only rayrender-0.38.10/rayrender/src/disk.h |only rayrender-0.38.10/rayrender/src/displacement.cpp |only rayrender-0.38.10/rayrender/src/displacement.h |only rayrender-0.38.10/rayrender/src/distributions.cpp |only rayrender-0.38.10/rayrender/src/distributions.h |only rayrender-0.38.10/rayrender/src/dop.h |only rayrender-0.38.10/rayrender/src/efloat.h |only rayrender-0.38.10/rayrender/src/ellipsoid.cpp |only rayrender-0.38.10/rayrender/src/ellipsoid.h |only rayrender-0.38.10/rayrender/src/filter.cpp |only rayrender-0.38.10/rayrender/src/filter.h |only rayrender-0.38.10/rayrender/src/float.h |only rayrender-0.38.10/rayrender/src/globalsampler.h |only rayrender-0.38.10/rayrender/src/hitable.cpp |only rayrender-0.38.10/rayrender/src/hitable.h |only rayrender-0.38.10/rayrender/src/hitablelist.cpp |only rayrender-0.38.10/rayrender/src/hitablelist.h |only rayrender-0.38.10/rayrender/src/infinite_area_light.cpp |only rayrender-0.38.10/rayrender/src/infinite_area_light.h |only rayrender-0.38.10/rayrender/src/instance.cpp |only rayrender-0.38.10/rayrender/src/instance.h |only rayrender-0.38.10/rayrender/src/integrator.cpp |only rayrender-0.38.10/rayrender/src/integrator.h |only rayrender-0.38.10/rayrender/src/interval.h |only rayrender-0.38.10/rayrender/src/loopsubdiv.cpp |only rayrender-0.38.10/rayrender/src/loopsubdiv.h |only rayrender-0.38.10/rayrender/src/material.cpp |only rayrender-0.38.10/rayrender/src/material.h |only rayrender-0.38.10/rayrender/src/mathinline.h |only rayrender-0.38.10/rayrender/src/matrix.cpp |only rayrender-0.38.10/rayrender/src/matrix.h |only rayrender-0.38.10/rayrender/src/mesh3d.cpp |only rayrender-0.38.10/rayrender/src/mesh3d.h |only rayrender-0.38.10/rayrender/src/microfacetdist.cpp |only rayrender-0.38.10/rayrender/src/microfacetdist.h |only rayrender-0.38.10/rayrender/src/miniply.cpp |only rayrender-0.38.10/rayrender/src/miniply.h |only rayrender-0.38.10/rayrender/src/normal.h |only rayrender-0.38.10/rayrender/src/onbh.h |only rayrender-0.38.10/rayrender/src/pcg |only rayrender-0.38.10/rayrender/src/pdf.cpp |only rayrender-0.38.10/rayrender/src/pdf.h |only rayrender-0.38.10/rayrender/src/perlin.cpp |only rayrender-0.38.10/rayrender/src/perlin.h |only rayrender-0.38.10/rayrender/src/plymesh.cpp |only rayrender-0.38.10/rayrender/src/plymesh.h |only rayrender-0.38.10/rayrender/src/point2.h |only rayrender-0.38.10/rayrender/src/point3.h |only rayrender-0.38.10/rayrender/src/quaternion.cpp |only rayrender-0.38.10/rayrender/src/quaternion.h |only rayrender-0.38.10/rayrender/src/ray.h |only rayrender-0.38.10/rayrender/src/raylog.cpp |only rayrender-0.38.10/rayrender/src/raylog.h |only rayrender-0.38.10/rayrender/src/raymesh.cpp |only rayrender-0.38.10/rayrender/src/raymesh.h |only rayrender-0.38.10/rayrender/src/rectangle.cpp |only rayrender-0.38.10/rayrender/src/rectangle.h |only rayrender-0.38.10/rayrender/src/rng.cpp |only rayrender-0.38.10/rayrender/src/rng.h |only rayrender-0.38.10/rayrender/src/sampler.cpp |only rayrender-0.38.10/rayrender/src/sampler.h |only rayrender-0.38.10/rayrender/src/simd.cpp |only rayrender-0.38.10/rayrender/src/simd.h |only rayrender-0.38.10/rayrender/src/sphere.cpp |only rayrender-0.38.10/rayrender/src/sphere.h |only rayrender-0.38.10/rayrender/src/stb |only rayrender-0.38.10/rayrender/src/texture.cpp |only rayrender-0.38.10/rayrender/src/texture.h |only rayrender-0.38.10/rayrender/src/texturecache.cpp |only rayrender-0.38.10/rayrender/src/texturecache.h |only rayrender-0.38.10/rayrender/src/tinyobj |only rayrender-0.38.10/rayrender/src/tonemap.cpp |only rayrender-0.38.10/rayrender/src/tonemap.h |only rayrender-0.38.10/rayrender/src/transform.cpp |only rayrender-0.38.10/rayrender/src/transform.h |only rayrender-0.38.10/rayrender/src/transformcache.cpp |only rayrender-0.38.10/rayrender/src/transformcache.h |only rayrender-0.38.10/rayrender/src/triangle.cpp |only rayrender-0.38.10/rayrender/src/triangle.h |only rayrender-0.38.10/rayrender/src/trianglemesh.cpp |only rayrender-0.38.10/rayrender/src/trianglemesh.h |only rayrender-0.38.10/rayrender/src/trimesh.cpp |only rayrender-0.38.10/rayrender/src/trimesh.h |only rayrender-0.38.10/rayrender/src/vec2.h |only rayrender-0.38.10/rayrender/src/vec3.h |only rayrender-0.38.10/rayrender/src/vectypes.cpp |only rayrender-0.38.10/rayrender/src/vectypes.h |only rayrender-0.41.3/rayrender/DESCRIPTION | 27 rayrender-0.41.3/rayrender/MD5 | 542 rayrender-0.41.3/rayrender/NAMESPACE | 6 rayrender-0.41.3/rayrender/NEWS |only rayrender-0.41.3/rayrender/R/RcppExports.R | 8 rayrender-0.41.3/rayrender/R/add_object.R | 16 rayrender-0.41.3/rayrender/R/animate_objects.R | 168 rayrender-0.41.3/rayrender/R/convert_color.R | 23 rayrender-0.41.3/rayrender/R/create_instances.R | 239 rayrender-0.41.3/rayrender/R/csg_construct.R | 993 - rayrender-0.41.3/rayrender/R/flipfunctions.R | 16 rayrender-0.41.3/rayrender/R/generate_camera_motion.R | 1090 + rayrender-0.41.3/rayrender/R/generate_cornell.R | 113 rayrender-0.41.3/rayrender/R/generate_ground.R | 34 rayrender-0.41.3/rayrender/R/generate_studio.R | 72 rayrender-0.41.3/rayrender/R/group_objects.R | 112 rayrender-0.41.3/rayrender/R/has_denoiser.R |only rayrender-0.41.3/rayrender/R/materials.R | 1308 +- rayrender-0.41.3/rayrender/R/objects.R | 4401 ++++--- rayrender-0.41.3/rayrender/R/pig.R | 359 rayrender-0.41.3/rayrender/R/post_process_frame.R | 120 rayrender-0.41.3/rayrender/R/post_process_scene.R | 355 rayrender-0.41.3/rayrender/R/prepare_scene_list.R | 305 rayrender-0.41.3/rayrender/R/process_scene.R | 363 rayrender-0.41.3/rayrender/R/r_obj.R | 26 rayrender-0.41.3/rayrender/R/ray_animated_transform.R | 52 rayrender-0.41.3/rayrender/R/ray_material.R | 82 rayrender-0.41.3/rayrender/R/ray_scene.R | 61 rayrender-0.41.3/rayrender/R/ray_shape_info.R | 34 rayrender-0.41.3/rayrender/R/ray_transform.R | 50 rayrender-0.41.3/rayrender/R/render_animation.R | 339 rayrender-0.41.3/rayrender/R/render_ao.R | 261 rayrender-0.41.3/rayrender/R/render_preview.R | 38 rayrender-0.41.3/rayrender/R/render_scene.R | 473 rayrender-0.41.3/rayrender/R/scene_row.R | 6 rayrender-0.41.3/rayrender/R/screen_line.R |only rayrender-0.41.3/rayrender/R/screen_text.R |only rayrender-0.41.3/rayrender/R/set_scene_material.R | 21 rayrender-0.41.3/rayrender/R/util-functions.R | 478 rayrender-0.41.3/rayrender/R/zzz.R | 14 rayrender-0.41.3/rayrender/cleanup | 1 rayrender-0.41.3/rayrender/configure | 5790 ---------- rayrender-0.41.3/rayrender/configure.win | 3 rayrender-0.41.3/rayrender/inst/extdata/3d_r_logo.txt | 2876 ++-- rayrender-0.41.3/rayrender/inst/extdata/r_obj.txt | 2070 +-- rayrender-0.41.3/rayrender/inst/tests/testthat/test-objects.R | 2580 +++- rayrender-0.41.3/rayrender/man/add_object.Rd | 8 rayrender-0.41.3/rayrender/man/animate_objects.Rd | 86 rayrender-0.41.3/rayrender/man/arrow.Rd | 68 rayrender-0.41.3/rayrender/man/bezier_curve.Rd | 63 rayrender-0.41.3/rayrender/man/cone.Rd | 82 rayrender-0.41.3/rayrender/man/convert_color.Rd | 4 rayrender-0.41.3/rayrender/man/create_instances.Rd | 108 rayrender-0.41.3/rayrender/man/csg_box.Rd | 26 rayrender-0.41.3/rayrender/man/csg_capsule.Rd | 26 rayrender-0.41.3/rayrender/man/csg_combine.Rd | 70 rayrender-0.41.3/rayrender/man/csg_cone.Rd | 26 rayrender-0.41.3/rayrender/man/csg_cylinder.Rd | 28 rayrender-0.41.3/rayrender/man/csg_ellipsoid.Rd | 26 rayrender-0.41.3/rayrender/man/csg_elongate.Rd | 66 rayrender-0.41.3/rayrender/man/csg_group.Rd | 12 rayrender-0.41.3/rayrender/man/csg_object.Rd | 36 rayrender-0.41.3/rayrender/man/csg_onion.Rd | 34 rayrender-0.41.3/rayrender/man/csg_plane.Rd | 26 rayrender-0.41.3/rayrender/man/csg_pyramid.Rd | 32 rayrender-0.41.3/rayrender/man/csg_rotate.Rd | 26 rayrender-0.41.3/rayrender/man/csg_round.Rd | 28 rayrender-0.41.3/rayrender/man/csg_rounded_cone.Rd | 26 rayrender-0.41.3/rayrender/man/csg_scale.Rd | 14 rayrender-0.41.3/rayrender/man/csg_sphere.Rd | 32 rayrender-0.41.3/rayrender/man/csg_torus.Rd | 38 rayrender-0.41.3/rayrender/man/csg_translate.Rd | 24 rayrender-0.41.3/rayrender/man/csg_triangle.Rd | 26 rayrender-0.41.3/rayrender/man/cube.Rd | 36 rayrender-0.41.3/rayrender/man/cylinder.Rd | 32 rayrender-0.41.3/rayrender/man/dielectric.Rd | 80 rayrender-0.41.3/rayrender/man/diffuse.Rd | 50 rayrender-0.41.3/rayrender/man/disk.Rd | 36 rayrender-0.41.3/rayrender/man/ellipsoid.Rd | 34 rayrender-0.41.3/rayrender/man/extruded_path.Rd | 138 rayrender-0.41.3/rayrender/man/extruded_polygon.Rd | 310 rayrender-0.41.3/rayrender/man/fliplr.Rd | 2 rayrender-0.41.3/rayrender/man/flipud.Rd | 2 rayrender-0.41.3/rayrender/man/generate_camera_motion.Rd | 81 rayrender-0.41.3/rayrender/man/generate_cornell.Rd | 24 rayrender-0.41.3/rayrender/man/generate_ground.Rd | 16 rayrender-0.41.3/rayrender/man/generate_studio.Rd | 20 rayrender-0.41.3/rayrender/man/get_saved_keyframes.Rd | 2 rayrender-0.41.3/rayrender/man/glossy.Rd | 82 rayrender-0.41.3/rayrender/man/group_objects.Rd | 48 rayrender-0.41.3/rayrender/man/hair.Rd | 28 rayrender-0.41.3/rayrender/man/has_denoiser.Rd |only rayrender-0.41.3/rayrender/man/lambertian.Rd | 6 rayrender-0.41.3/rayrender/man/light.Rd | 28 rayrender-0.41.3/rayrender/man/mesh3d_model.Rd | 31 rayrender-0.41.3/rayrender/man/metal.Rd | 42 rayrender-0.41.3/rayrender/man/microfacet.Rd | 76 rayrender-0.41.3/rayrender/man/new_tibble_row.Rd | 2 rayrender-0.41.3/rayrender/man/obj_model.Rd | 75 rayrender-0.41.3/rayrender/man/path.Rd | 90 rayrender-0.41.3/rayrender/man/pig.Rd | 40 rayrender-0.41.3/rayrender/man/ply_model.Rd | 8 rayrender-0.41.3/rayrender/man/post_process_frame.Rd | 5 rayrender-0.41.3/rayrender/man/post_process_scene.Rd | 17 rayrender-0.41.3/rayrender/man/prepare_scene_list.Rd | 7 rayrender-0.41.3/rayrender/man/process_scene.Rd | 1 rayrender-0.41.3/rayrender/man/r_obj.Rd | 16 rayrender-0.41.3/rayrender/man/raymesh_model.Rd | 65 rayrender-0.41.3/rayrender/man/render_animation.Rd | 104 rayrender-0.41.3/rayrender/man/render_ao.Rd | 75 rayrender-0.41.3/rayrender/man/render_preview.Rd | 20 rayrender-0.41.3/rayrender/man/render_scene.Rd | 163 rayrender-0.41.3/rayrender/man/screen_line.Rd |only rayrender-0.41.3/rayrender/man/screen_text.Rd |only rayrender-0.41.3/rayrender/man/segment.Rd | 64 rayrender-0.41.3/rayrender/man/set_scene_material.Rd | 6 rayrender-0.41.3/rayrender/man/sphere.Rd | 22 rayrender-0.41.3/rayrender/man/text3d.Rd | 55 rayrender-0.41.3/rayrender/man/triangle.Rd | 26 rayrender-0.41.3/rayrender/man/xy_rect.Rd | 22 rayrender-0.41.3/rayrender/man/xz_rect.Rd | 22 rayrender-0.41.3/rayrender/man/yz_rect.Rd | 22 rayrender-0.41.3/rayrender/src/Makevars.in | 19 rayrender-0.41.3/rayrender/src/Makevars.win.in |only rayrender-0.41.3/rayrender/src/PrintClassSizes.cpp | 52 rayrender-0.41.3/rayrender/src/RcppExports.cpp | 23 rayrender-0.41.3/rayrender/src/core |only rayrender-0.41.3/rayrender/src/ext |only rayrender-0.41.3/rayrender/src/hitables |only rayrender-0.41.3/rayrender/src/materials |only rayrender-0.41.3/rayrender/src/math |only rayrender-0.41.3/rayrender/src/render_animation_rcpp.cpp | 137 rayrender-0.41.3/rayrender/src/render_scene_rcpp.cpp | 878 + rayrender-0.41.3/rayrender/src/utils |only rayrender-0.41.3/rayrender/tools |only 267 files changed, 14172 insertions(+), 16034 deletions(-)
Title: National Emergency Medical Service Quality Alliance Measure
Calculations
Description: Designed to automate the calculation of Emergency Medical
Service (EMS) quality metrics, 'nemsqar' implements measures defined
by the National EMS Quality Alliance (NEMSQA). By providing reliable,
evidence-based quality assessments, the package supports EMS agencies,
healthcare providers, and researchers in evaluating and improving
patient outcomes. Users can find details on all approved NEMSQA
measures at <https://www.nemsqa.org/measures>. Full technical
specifications, including documentation and pseudocode used to develop
'nemsqar', are available on the NEMSQA website after creating a user
profile at <https://www.nemsqa.org>.
Author: Nicolas Foss [aut, cre],
Samuel Kordik [aut] ,
Alyssa Green [ctb],
Iowa Department of Health and Human Services [cph]
Maintainer: Nicolas Foss <nicolas.foss@hhs.iowa.gov>
Diff between nemsqar versions 1.2.0 dated 2026-05-12 and 1.2.1 dated 2026-06-16
DESCRIPTION | 15 ++++++------ MD5 | 58 ++++++++++++++++++++++++----------------------- NEWS.md | 12 ++++++++- R/airway_01.R | 56 ++++++++++++++++++++++++--------------------- R/airway_05.R | 56 ++++++++++++++++++++++++--------------------- R/airway_18.R | 52 +++++++++++++++++++++--------------------- R/airway_18_population.R | 34 +++++++++++++-------------- R/asthma_01.R | 56 ++++++++++++++++++++++++--------------------- R/constants.R | 2 - R/globalVariables.R | 6 ++-- R/hypoglycemia_01.R | 56 ++++++++++++++++++++++++--------------------- R/pediatrics_03b.R | 56 ++++++++++++++++++++++++--------------------- R/respiratory_01.R | 56 ++++++++++++++++++++++++--------------------- R/respiratory_02.R | 56 ++++++++++++++++++++++++--------------------- R/safety_01.R | 56 ++++++++++++++++++++++++--------------------- R/safety_02.R | 56 ++++++++++++++++++++++++--------------------- R/safety_04.R | 56 ++++++++++++++++++++++++--------------------- R/seizure_02.R | 56 ++++++++++++++++++++++++--------------------- R/stroke_01.R | 56 ++++++++++++++++++++++++--------------------- R/syncope_01.R | 56 ++++++++++++++++++++++++--------------------- R/tbi_01.R | 56 ++++++++++++++++++++++++--------------------- R/tbi_01_population.R | 6 ++-- R/trauma_01.R | 56 ++++++++++++++++++++++++--------------------- R/trauma_03.R | 56 ++++++++++++++++++++++++--------------------- R/trauma_04.R | 56 ++++++++++++++++++++++++--------------------- R/trauma_08.R | 56 ++++++++++++++++++++++++--------------------- R/trauma_14.R | 56 ++++++++++++++++++++++++--------------------- R/ttr_01.R | 56 ++++++++++++++++++++++++--------------------- README.md | 2 - inst/WORDLIST |only tests/spelling.R |only 31 files changed, 699 insertions(+), 608 deletions(-)
Title: Forecasting Time Series by Theta Models
Description: Routines for forecasting univariate time series using Theta Models.
Author: Jose Augusto Fiorucci [aut, cre, cph] ,
Francisco Louzada [aut, cph] ,
Igor De Oliveira Barros Faluhelyi [aut, ctb]
Maintainer: Jose Augusto Fiorucci <jafiorucci@gmail.com>
Diff between forecTheta versions 3.0 dated 2025-05-20 and 3.0.3 dated 2026-06-16
ChangeLog | 8 +++++++ DESCRIPTION | 6 ++--- MD5 | 10 ++++----- R/forecastFunctions.R | 49 +++++++++++++++++++++------------------------- man/baggedThetaModels.Rd | 12 ++++------- man/forecTheta-package.Rd | 4 +-- 6 files changed, 46 insertions(+), 43 deletions(-)
Title: Scientific Content and Citation Analysis from PDF Documents
Description: Provides comprehensive tools for extracting and analyzing scientific
content from PDF documents, including citation extraction, reference matching,
text analysis, and bibliometric indicators. Supports multi-column PDF layouts,
'CrossRef' API <https://www.crossref.org/documentation/retrieve-metadata/rest-api/> integration, and advanced citation parsing.
Author: Massimo Aria [cre, aut, cph] ,
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between contentanalysis versions 1.1.0 dated 2026-05-19 and 1.1.1 dated 2026-06-16
DESCRIPTION | 6 ++-- MD5 | 10 +++---- NEWS.md | 2 + README.md | 2 - inst/doc/introduction.html | 38 +++++++++++++++--------------- man/figures/README-unnamed-chunk-10-1.png |binary 6 files changed, 30 insertions(+), 28 deletions(-)
More information about contentanalysis at CRAN
Permanent link
Title: A Collection of Database, Data Structure, Visualization, and
Utility Functions for R
Description: The caroline R library contains dozens of functions useful
for: database migration (dbWriteTable2), database style joins &
aggregation (nerge, groupBy, & bestBy), data structure
conversion (nv, tab2df), legend table making (sstable & leghead),
automatic legend positioning for scatter and box plots (),
plot annotation (labsegs & mvlabs), data visualization
(pies, sparge, confound.grid & raPlot), character string manipulation (m & pad),
file I/O (write.delim), batch scripting, data exploration, and more.
The package's greatest contributions lie in the database style merge,
aggregation and interface functions as well as in it's extensive
use and propagation of row, column and vector names in most functions.
Author: David Schruth [aut, cre]
Maintainer: David Schruth <code@anthropoidea.org>
Diff between caroline versions 0.9.9 dated 2024-10-21 and 1.0.0 dated 2026-06-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/plot.sparge.R | 35 ++++++++++++++++++++--------------- R/string.R | 5 ++++- man/plot.sparge.Rd | 7 ++++--- 5 files changed, 36 insertions(+), 27 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [ctb] ,
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Atsushi Yasumoto [ctb] ,
Aust Frederik [ctb] ,
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Clif [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.46 dated 2025-12-05 and 0.47 dated 2026-06-16
DESCRIPTION | 10 - MD5 | 52 +++++----- R/bs4_book.R | 4 R/gitbook.R | 2 R/html.R | 3 R/publish.R | 17 --- R/render.R | 4 R/skeleton.R | 18 ++- R/utils.R | 4 README.md | 4 build/vignette.rds |binary inst/CITATION | 2 inst/doc/bookdown.R | 4 inst/doc/bookdown.Rmd | 34 +++--- inst/doc/bookdown.html | 45 ++++---- inst/rstudio/templates/project/resources/common/05-blocks.Rmd | 4 inst/rstudio/templates/project/resources/common/06-share.Rmd | 2 inst/rstudio/templates/project/resources/common/README.md | 2 inst/rstudio/templates/project/resources/common/index.Rmd | 2 man/bookdown-package.Rd | 5 man/bs4_book.Rd | 4 man/fence_theorems.Rd | 4 man/gitbook.Rd | 2 man/html_document2.Rd | 2 man/render_book.Rd | 4 tests/testthat/helper-validate_html.R | 17 ++- vignettes/bookdown.Rmd | 34 +++--- 27 files changed, 148 insertions(+), 137 deletions(-)
Title: Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It implements the comprehensive workflow for science mapping analysis proposed in Aria M. and
Cuccurullo C. (2017) <doi:10.1016/j.joi.2017.08.007>.
'bibliometrix' provides various routines for importing bibliographic data from 'SCOPUS',
'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions'
(<https://www.dimensions.ai/>), 'OpenAlex' (<https://openalex.org/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>), 'Lens' (<https://lens.org>),
and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut, cph] ,
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 5.4.0 dated 2026-05-16 and 5.4.1 dated 2026-06-16
bibliometrix-5.4.0/bibliometrix/tests/testthat/Rplots.pdf |only bibliometrix-5.4.1/bibliometrix/DESCRIPTION | 8 bibliometrix-5.4.1/bibliometrix/MD5 | 37 - bibliometrix-5.4.1/bibliometrix/NEWS | 7 bibliometrix-5.4.1/bibliometrix/R/apply_citation_matching.R | 270 +++++++++- bibliometrix-5.4.1/bibliometrix/R/convert2df.R | 7 bibliometrix-5.4.1/bibliometrix/R/plotThematicEvolution.R | 30 + bibliometrix-5.4.1/bibliometrix/R/summary.bibliometrix.R | 2 bibliometrix-5.4.1/bibliometrix/R/thematicMap.R | 22 bibliometrix-5.4.1/bibliometrix/R/zzz.R | 12 bibliometrix-5.4.1/bibliometrix/build/partial.rdb |binary bibliometrix-5.4.1/bibliometrix/inst/CITATION | 12 bibliometrix-5.4.1/bibliometrix/inst/biblioshiny/biblioAI.R | 163 +++++- bibliometrix-5.4.1/bibliometrix/inst/biblioshiny/contentAnalysisServer.R | 2 bibliometrix-5.4.1/bibliometrix/inst/biblioshiny/server.R | 118 ---- bibliometrix-5.4.1/bibliometrix/inst/biblioshiny/ui.R | 126 +++- bibliometrix-5.4.1/bibliometrix/inst/biblioshiny/utils.R | 6 bibliometrix-5.4.1/bibliometrix/man/applyCitationMatching.Rd | 42 + bibliometrix-5.4.1/bibliometrix/man/applyReferenceMatching.Rd | 42 + bibliometrix-5.4.1/bibliometrix/man/normalize_citations.Rd | 55 +- 20 files changed, 749 insertions(+), 212 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-07-24 0.1.1
2024-07-21 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-28 2.1.1
2020-06-06 2.1.0
2020-05-05 2.0.0
2020-03-16 1.2.0
2018-04-09 1.1.1
2018-02-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-11 0.2.1
2026-02-14 0.1.6
2026-01-25 0.1.5
2026-01-21 0.1.4
2026-01-09 0.1.3
2025-11-17 0.1.2