Title: Variance-Guided Regression Improving Upon OLS and ANOVA
Description: Fits variance-guided linear regression models that provide an
alternative to ordinary least squares (OLS) for general linear-model
design matrices, including ANOVA-style encodings. The methods use an
iteratively reweighted least squares estimator or an iteratively reweighted
lasso estimator and implement the global linear mean-variance model from
the associated 2026 Statistics in Medicine article <doi:10.1002/sim.70632>.
Under the assumptions in that
paper, the estimator matches the homoscedastic baseline in population
predictive quasi-risk when variance is constant and improves on it when the
variance depends on covariates. The grouping-based nonlinear prediction
extension from Section 3 is available in the development version on GitHub.
Author: Sibei Liu [aut],
Min Lu [aut, cre]
Maintainer: Min Lu <luminwin@gmail.com>
Diff between varGuid versions 0.1.4 dated 2026-05-29 and 0.1.5 dated 2026-06-18
DESCRIPTION | 28 ++++++++++++++++------------ MD5 | 13 +++++++------ README.md | 8 ++++---- inst |only man/cobra2d.Rd | 11 +++++++++-- man/lmv.Rd | 3 ++- man/prd.Rd | 3 ++- man/varGuid-package.Rd | 22 ++++++++++++---------- 8 files changed, 52 insertions(+), 36 deletions(-)
Title: Calculate Metrics for Trauma System Performance
Description: Hospitals, hospital systems, and even trauma systems that
provide care to injured patients may not be aware of robust metrics
that can help gauge the efficacy of their programs in saving the lives
of injured patients. 'traumar' provides robust functions driven by
the academic literature to automate the calculation of relevant
metrics to individuals desiring to measure the performance of their
trauma center or even a trauma system. 'traumar' also provides some
helper functions for the data analysis journey. Users can refer to the
following publications for descriptions of the methods used in
'traumar'. TRISS methodology, including probability of survival, and
the W, M, and Z Scores - Flora (1978)
<doi:10.1097/00005373-197810000-00003>, Boyd et al. (1987,
PMID:3106646), Llullaku et al. (2009) <doi:10.1186/1749-7922-4-2>,
Singh et al. (2011) <doi:10.4103/0974-2700.86626>, Baker et al. (1974,
PMID:4814394), and Champion et al. (1989)
<doi:10.1097/00005373-198905000- [...truncated...]
Author: Nicolas Foss [aut, cre],
Iowa Department of Health and Human Services [cph]
Maintainer: Nicolas Foss <nicolas.foss@hhs.iowa.gov>
Diff between traumar versions 1.2.6 dated 2026-05-07 and 1.2.7 dated 2026-06-18
DESCRIPTION | 11 ++-- MD5 | 16 +++-- NEWS.md | 5 + R/not_in.r | 17 +++++- build/partial.rdb |binary inst |only man/grapes-not_in-grapes.Rd | 8 ++ man/traumar-package.Rd | 5 + tests/spelling.R |only tests/testthat/test-not_in.R | 116 +++++++++++++++++++++++++------------------ 10 files changed, 115 insertions(+), 63 deletions(-)
Title: Cross-Quantilogram
Description: Estimation and inference methods for the cross-quantilogram.
The cross-quantilogram is a measure of nonlinear dependence between
two variables, based on either unconditional or conditional quantile
functions. It can be considered an extension of the correlogram,
which is a correlation function over multiple lag periods that mainly
focuses on linear dependency. One can use the cross-quantilogram to
detect the presence of directional predictability from one time series
to another. This package provides a statistical inference method
based on the stationary bootstrap. For detailed theoretical and
empirical explanations, see Linton and Whang (2007) for univariate
time series analysis and Han, Linton, Oka and Whang (2016) for
multivariate time series analysis. The full references for these key
publications are as follows: (1) Linton, O., and Whang, Y. J. (2007).
The quantilogram: with an application to evaluating directional
predictability. Journal of Econometrics, 141(1), 250-282
< [...truncated...]
Author: Tatsushi Oka [aut, cre],
Heejon Han [ctb],
Oliver Linton [ctb],
Yoon-Jae Whang [ctb]
Maintainer: Tatsushi Oka <oka.econ@gmail.com>
Diff between quantilogram versions 3.1.1 dated 2024-08-27 and 3.2.1 dated 2026-06-18
DESCRIPTION | 10 - MD5 | 68 +++---- NEWS.md | 15 - R/Qstat.R | 2 R/Qstat.reg.sb.R | 133 +++----------- R/Qstat.sb.R | 144 +++------------ R/Qstat.sb.opt.R | 143 +-------------- R/corr.lag.partial.R | 4 R/crossq.R | 2 R/crossq.heatmap.R | 411 ++++++++++++++++++++++++-------------------- R/crossq.partial.sb.R | 121 ++++-------- R/crossq.partial.sb.opt.R | 135 ++++---------- R/crossq.plot.R | 249 ++++++++++++++------------ R/crossq.sb.R | 62 +----- R/crossq.sb.opt.R | 179 ++++++------------- R/crossqreg.max.R | 10 - R/crossqreg.sb.R | 173 +++++++----------- R/q.hit.R | 7 R/stock.R | 8 R/sys.risk.R | 4 README.md | 2 data/stock.rda |binary data/sys.risk.rda |binary man/Qstat.Rd | 2 man/Qstat.reg.sb.Rd | 8 man/Qstat.sb.Rd | 8 man/Qstat.sb.opt.Rd | 6 man/crossq.Rd | 2 man/crossq.heatmap.Rd | 32 ++- man/crossq.plot.Rd | 20 -- man/crossqreg.max.Rd | 2 man/crossqreg.sb.Rd | 8 man/quantilogram-package.Rd | 5 man/stock.Rd | 8 man/sys.risk.Rd | 4 35 files changed, 794 insertions(+), 1193 deletions(-)
Title: Render Multilingual Questionnaires from 'LimeSurvey' '.lss'
Files
Description: Render 'LimeSurvey' '.lss' survey exports as multilingual
questionnaire documents in Word ('.docx') or PDF, displaying up to
four languages side by side with localized chrome in English, French,
German, Spanish and Italian. Includes a rule-based automated audit
that flags missing translations, forward filter references, duplicate
codes, array-scale inconsistencies and orphan structural references.
Designed for anyone working with a 'LimeSurvey' survey: researchers,
methodologists, ethics committees, translators and reviewers.
Processing is fully
local: the source file is the only input and no questionnaire content
is uploaded to a third-party service.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between lssdoc versions 0.1.0 dated 2026-06-15 and 0.1.1 dated 2026-06-18
DESCRIPTION | 6 +++--- MD5 | 19 ++++++++++--------- NEWS.md | 5 +++++ R/read_lss.R | 27 +++++++++++++++++++++++++++ README.md | 32 ++++++++++++++++++++++---------- inst/CITATION |only inst/WORDLIST | 1 + inst/doc/lssdoc.html | 6 +++--- man/figures/template_cards.png |binary man/figures/template_table.png |binary tests/testthat/test-read_lss.R | 10 ++++++++++ 11 files changed, 81 insertions(+), 25 deletions(-)
Title: Evidence-Based Bayesian Disaggregation of Aggregate Indices
Description: Disaggregates an observed aggregate price index into sectoral
components with a Bayesian state-space model in which the aggregate enters as
a genuine observation density rather than as a renormalization identity. A
random-walk-with-drift transition in log space (with partial pooling on the
drift and the innovation scale) and an estimable cross-sectional
concentration produce posterior draws of the sectoral indices with credible
intervals, suitable as multiple-imputation input for downstream dynamic
models. The Hamiltonian Monte Carlo engine follows Stan (Carpenter et al.,
2017) <doi:10.18637/jss.v076.i01>; model comparison uses Pareto Smoothed
Importance Sampling Leave-One-Out cross-validation (Vehtari, Gelman and
Gabry, 2017) <doi:10.1007/s11222-016-9696-4>. A closed-form linear-Gaussian
Kalman/RTS smoother provides an exact, MCMC-free Bayesian alternative for the
same aggregate evidence.
Author: Jose Mauricio Gomez Julian [aut, cre]
Maintainer: Jose Mauricio Gomez Julian <isadore.nabi@pm.me>
Diff between BayesianDisaggregation versions 0.1.2 dated 2025-10-16 and 0.2.1 dated 2026-06-18
BayesianDisaggregation-0.1.2/BayesianDisaggregation/R/bayesian_disaggregate.R |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/R/grid_search.R |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/R/likelihood.R |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/R/main.R |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/R/methods.R |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/R/metrics.R |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/inst/doc/MANUALUSUARIO-ESP.R |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/inst/doc/MANUALUSUARIO-ESP.Rmd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/inst/doc/MANUALUSUARIO-ESP.html |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/inst/doc/USERMANUAL-ENG.R |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/inst/doc/USERMANUAL-ENG.Rmd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/inst/doc/USERMANUAL-ENG.html |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/bayesian_disaggregate.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/coherence_score.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/compute_L_from_P.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/interpretability_score.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/numerical_stability_exp.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/posterior_adaptive.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/posterior_dirichlet.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/posterior_multiplicative.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/posterior_weighted.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/run_grid_search.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/save_results.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/spread_likelihood.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/stability_composite.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/man/temporal_stability.Rd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/tests/testthat/test_data_io.R |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/tests/testthat/test_utils.R |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/vignettes/MANUALUSUARIO-ESP.Rmd |only BayesianDisaggregation-0.1.2/BayesianDisaggregation/vignettes/USERMANUAL-ENG.Rmd |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/DESCRIPTION | 43 +- BayesianDisaggregation-0.2.1/BayesianDisaggregation/MD5 | 75 ++--- BayesianDisaggregation-0.2.1/BayesianDisaggregation/NAMESPACE | 41 -- BayesianDisaggregation-0.2.1/BayesianDisaggregation/NEWS.md |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/R/baseline_conjugate.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/R/data_io.R | 76 +---- BayesianDisaggregation-0.2.1/BayesianDisaggregation/R/disaggregate_statespace.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/R/from_files.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/R/simulate_disagg.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/R/stan_backend.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/R/utils.R | 148 ++++------ BayesianDisaggregation-0.2.1/BayesianDisaggregation/R/zzz-imports.R | 13 BayesianDisaggregation-0.2.1/BayesianDisaggregation/build/vignette.rds |binary BayesianDisaggregation-0.2.1/BayesianDisaggregation/inst/doc/evidence-based-disaggregation.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/inst/doc/evidence-based-disaggregation.Rmd |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/inst/doc/evidence-based-disaggregation.html |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/inst/extdata/CPI.xlsx |binary BayesianDisaggregation-0.2.1/BayesianDisaggregation/inst/stan |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/man/align_disagg_inputs.Rd |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/man/disagg_default_priors.Rd |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/man/disagg_stan_code.Rd |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/man/disaggregate_conjugate.Rd |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/man/disaggregate_from_files.Rd |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/man/disaggregate_statespace.Rd |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/man/log_enable.Rd | 8 BayesianDisaggregation-0.2.1/BayesianDisaggregation/man/read_cpi.Rd | 28 - BayesianDisaggregation-0.2.1/BayesianDisaggregation/man/read_weights_matrix.Rd | 39 -- BayesianDisaggregation-0.2.1/BayesianDisaggregation/man/simulate_disagg.Rd |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/tests/testthat.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/tests/testthat/fixtures |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/tests/testthat/test-conjugate.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/tests/testthat/test-inputs.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/tests/testthat/test-readers.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/tests/testthat/test-statespace-golden.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/tests/testthat/test-statespace-recovery.R |only BayesianDisaggregation-0.2.1/BayesianDisaggregation/vignettes/evidence-based-disaggregation.Rmd |only 66 files changed, 171 insertions(+), 300 deletions(-)
More information about BayesianDisaggregation at CRAN
Permanent link
Title: Empirical Discovery of Differential Equations from Time Series
Data
Description: A comprehensive toolkit for discovering differential and difference
equations from empirical time series data using symbolic regression. The package
implements a complete workflow from data preprocessing (including Total Variation
Regularized differentiation for noisy economic data), visual exploration of
dynamical structure, and symbolic equation discovery via genetic algorithms.
It leverages a high-performance 'Julia' backend ('SymbolicRegression.jl') to provide
industrial-grade robustness, physics-informed constraints, and rigorous
out-of-sample validation. Designed for economists, physicists, and researchers
studying dynamical systems from observational data.
Author: Jose Mauricio Gomez Julian [aut, cre]
Maintainer: Jose Mauricio Gomez Julian <isadore.nabi@pm.me>
Diff between EmpiricalDynamics versions 0.1.3 dated 2026-03-17 and 0.1.5 dated 2026-06-18
DESCRIPTION | 18 MD5 | 15 NEWS.md |only R/symbolic_search.R | 398 ++++++- build/vignette.rds |binary inst/doc/getting-started.R | 700 ++++++------- inst/doc/getting-started.html | 1745 ++++++++++++++++----------------- man/symbolic_search_julia.Rd | 2 man/symbolic_search_julia_connector.Rd |only man/symbolic_search_juliacall.Rd |only 10 files changed, 1584 insertions(+), 1294 deletions(-)
More information about EmpiricalDynamics at CRAN
Permanent link
Title: Access the 'Finna' API
Description: Provides functions to access and retrieve metadata from the 'Finna' API <https://api.finna.fi/>, which aggregates content from Finnish archives, libraries, and museums.
Author: Akewak Jeba [aut, cre] ,
Leo Lahti [aut]
Maintainer: Akewak Jeba <akjeba@utu.fi>
Diff between finna versions 0.1.1 dated 2025-01-22 and 0.1.2 dated 2026-06-18
finna-0.1.1/finna/R/analyze_metadata.R |only finna-0.1.1/finna/R/analyze_trends_over_time.R |only finna-0.1.1/finna/R/fetch_finna_collection.R |only finna-0.1.1/finna/man/analyze_metadata.Rd |only finna-0.1.1/finna/man/analyze_trends_over_time.Rd |only finna-0.1.1/finna/tests/testthat/test-analyze_trends_over_time.R |only finna-0.1.1/finna/tests/testthat/test_analyze_metadata.R |only finna-0.1.1/finna/tests/testthat/test_refinemetadata.R |only finna-0.1.1/finna/vignettes/articles/refinemetadata.Rmd |only finna-0.1.2/finna/DESCRIPTION | 24 finna-0.1.2/finna/MD5 | 94 +- finna-0.1.2/finna/NAMESPACE | 21 finna-0.1.2/finna/R/data.R |only finna-0.1.2/finna/R/enrich_author_name.R | 1 finna-0.1.2/finna/R/fennica_all_records.R | 1 finna-0.1.2/finna/R/fetch_fennica_records.R |only finna-0.1.2/finna/R/fetch_finna.R |only finna-0.1.2/finna/R/fetch_identifiers_oai_pmh.R |only finna-0.1.2/finna/R/fetch_viola_records.R | 5 finna-0.1.2/finna/R/finna_as_json.R | 2 finna-0.1.2/finna/R/finna_cite.R | 1 finna-0.1.2/finna/R/finna_interactive.R | 1 finna-0.1.2/finna/R/get_finna_records.R | 3 finna-0.1.2/finna/R/harvest_oai_pmh.R | 83 + finna-0.1.2/finna/R/refine_metadata.R | 69 - finna-0.1.2/finna/R/save_for_offline.R | 1 finna-0.1.2/finna/R/search_finna.R | 3 finna-0.1.2/finna/R/search_publisher.R | 3 finna-0.1.2/finna/R/search_with_annif.R |only finna-0.1.2/finna/R/summarize_metadata.R |only finna-0.1.2/finna/R/timeline.R |only finna-0.1.2/finna/R/utils.R | 3 finna-0.1.2/finna/R/zzz.R |only finna-0.1.2/finna/README.md | 20 finna-0.1.2/finna/build/vignette.rds |binary finna-0.1.2/finna/data |only finna-0.1.2/finna/inst/doc/vignette.R | 4 finna-0.1.2/finna/inst/doc/vignette.Rmd | 9 finna-0.1.2/finna/inst/doc/vignette.html | 421 +++++----- finna-0.1.2/finna/man/fennica_subset.Rd |only finna-0.1.2/finna/man/fetch_fennica_records.Rd |only finna-0.1.2/finna/man/fetch_finna.Rd | 2 finna-0.1.2/finna/man/fetch_identifiers_with_sets.Rd |only finna-0.1.2/finna/man/fetch_oai_sets.Rd |only finna-0.1.2/finna/man/fetch_viola_records.Rd | 4 finna-0.1.2/finna/man/get_finna_records.Rd | 2 finna-0.1.2/finna/man/parse_marc_fields.Rd |only finna-0.1.2/finna/man/refine_metadata.Rd | 38 finna-0.1.2/finna/man/search_finna.Rd | 2 finna-0.1.2/finna/man/search_finna_with_annif.Rd |only finna-0.1.2/finna/man/search_publisher.Rd | 2 finna-0.1.2/finna/man/summarize_metadata.Rd |only finna-0.1.2/finna/man/timeline.Rd |only finna-0.1.2/finna/tests/testthat/test-fetch_finna.R | 2 finna-0.1.2/finna/tests/testthat/test-get_finna_records.R | 2 finna-0.1.2/finna/tests/testthat/test-search_publisher.R | 1 finna-0.1.2/finna/tests/testthat/test_search_finna.R | 1 finna-0.1.2/finna/vignettes/articles/Fennica.Rmd | 20 finna-0.1.2/finna/vignettes/articles/analyse_metadata.Rmd |only finna-0.1.2/finna/vignettes/articles/fennica_authors_kanto.Rmd |only finna-0.1.2/finna/vignettes/articles/viola_collections.Rmd | 63 + finna-0.1.2/finna/vignettes/vignette.Rmd | 9 62 files changed, 585 insertions(+), 332 deletions(-)
Title: Dynamic Factor Models
Description: Efficient estimation of Dynamic Factor Models using the Expectation Maximization (EM) algorithm
or Two-Step (2S) estimation, supporting datasets with missing data and mixed-frequency nowcasting applications.
Factors follow a stationary VAR process of order p. Estimation options include: running the Kalman Filter and
Smoother once with PCA initial values (2S) as in Doz, Giannone and Reichlin (2011) <doi:10.1016/j.jeconom.2011.02.012>;
iterated Kalman Filtering and Smoothing until EM convergence as in Doz, Giannone and Reichlin (2012)
<doi:10.1162/REST_a_00225>; or the adapted EM algorithm of Banbura and Modugno (2014) <doi:10.1002/jae.2306>,
allowing arbitrary missing-data patterns and monthly-quarterly mixed-frequency datasets. The implementation uses
the 'Armadillo' 'C++' library and the 'collapse' package for fast estimation. A comprehensive set of methods supports
interpretation and visualization, forecasting, and decomposition of the 'news' content of macroeconomi [...truncated...]
Author: Sebastian Krantz [aut, cre],
Rytis Bagdziunas [aut],
Santtu Tikka [rev],
Eli Holmes [rev],
Christian Klettner [ctb]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between dfms versions 1.0.0 dated 2026-01-26 and 1.0.1 dated 2026-06-18
dfms-1.0.0/dfms/inst/doc/introduction.R |only dfms-1.0.1/dfms/DESCRIPTION | 16 dfms-1.0.1/dfms/MD5 | 26 dfms-1.0.1/dfms/NAMESPACE | 2 dfms-1.0.1/dfms/NEWS.md | 5 dfms-1.0.1/dfms/R/convert.R |only dfms-1.0.1/dfms/R/methods.R | 8 dfms-1.0.1/dfms/README.md | 10 dfms-1.0.1/dfms/build/vignette.rds |binary dfms-1.0.1/dfms/inst/doc/dynamic_factor_models.pdf |binary dfms-1.0.1/dfms/inst/doc/introduction.Rmd | 441 +++++++-- dfms-1.0.1/dfms/inst/doc/introduction.html | 999 ++++++++------------- dfms-1.0.1/dfms/man/convert.Rd |only dfms-1.0.1/dfms/man/news.Rd | 8 dfms-1.0.1/dfms/vignettes/introduction.Rmd | 441 +++++++-- dfms-1.0.1/dfms/vignettes/introduction.Rmd.orig |only 16 files changed, 1219 insertions(+), 737 deletions(-)
Title: Bayesian Nonlinear Ornstein-Uhlenbeck Models with Stochastic
Volatility
Description: Fits Bayesian nonlinear Ornstein-Uhlenbeck models with cubic drift,
stochastic volatility, and Student-t innovations. The package implements
hierarchical priors for sector-specific parameters and supports parallel
MCMC sampling via 'Stan'. Model comparison is performed using Pareto
Smoothed Importance Sampling Leave-One-Out (PSIS-LOO) cross-validation
following Vehtari, Gelman, and Gabry (2017)
<doi:10.1007/s11222-016-9696-4>. Prior specifications follow recommendations
from Gelman (2006) <doi:10.1214/06-BA117A> for scale parameters.
Author: Jose Mauricio Gomez Julian [aut, cre]
Maintainer: Jose Mauricio Gomez Julian <isadore.nabi@pm.me>
Diff between bayesianOU versions 0.1.3 dated 2025-12-19 and 0.2.0 dated 2026-06-18
bayesianOU-0.1.3/bayesianOU/inst/stan/ou_nonlinear_tmg.stan |only bayesianOU-0.1.3/bayesianOU/man/ou_nonlinear_tmg_stan_code.Rd |only bayesianOU-0.2.0/bayesianOU/DESCRIPTION | 17 bayesianOU-0.2.0/bayesianOU/MD5 | 93 - bayesianOU-0.2.0/bayesianOU/NAMESPACE | 24 bayesianOU-0.2.0/bayesianOU/NEWS.md |only bayesianOU-0.2.0/bayesianOU/R/bayesianOU-package.R | 66 bayesianOU-0.2.0/bayesianOU/R/diagnostics.R | 744 +++++---- bayesianOU-0.2.0/bayesianOU/R/export.R | 418 ++--- bayesianOU-0.2.0/bayesianOU/R/extractors.R | 768 +++++----- bayesianOU-0.2.0/bayesianOU/R/extractors_nested.R |only bayesianOU-0.2.0/bayesianOU/R/fit_ou_nested.R |only bayesianOU-0.2.0/bayesianOU/R/fit_ou_nested_mi.R |only bayesianOU-0.2.0/bayesianOU/R/fit_ou_nonlinear.R | 494 +----- bayesianOU-0.2.0/bayesianOU/R/geometry.R |only bayesianOU-0.2.0/bayesianOU/R/level_spec.R |only bayesianOU-0.2.0/bayesianOU/R/plots.R | 454 ++--- bayesianOU-0.2.0/bayesianOU/R/s3_methods.R |only bayesianOU-0.2.0/bayesianOU/R/stan_code.R | 290 --- bayesianOU-0.2.0/bayesianOU/R/utils.R | 404 ++--- bayesianOU-0.2.0/bayesianOU/README.md | 152 + bayesianOU-0.2.0/bayesianOU/build |only bayesianOU-0.2.0/bayesianOU/inst/doc |only bayesianOU-0.2.0/bayesianOU/inst/stan/ou_nested.stan |only bayesianOU-0.2.0/bayesianOU/man/bayesianOU-package.Rd | 27 bayesianOU-0.2.0/bayesianOU/man/build_beta_tmg_table.Rd | 11 bayesianOU-0.2.0/bayesianOU/man/compute_common_factor.Rd | 10 bayesianOU-0.2.0/bayesianOU/man/drift_decomposition_grid.Rd | 8 bayesianOU-0.2.0/bayesianOU/man/evaluate_oos.Rd | 20 bayesianOU-0.2.0/bayesianOU/man/evaluate_oos_nested.Rd |only bayesianOU-0.2.0/bayesianOU/man/extract_convergence_evidence.Rd | 24 bayesianOU-0.2.0/bayesianOU/man/extract_mu_trajectory.Rd |only bayesianOU-0.2.0/bayesianOU/man/fit_ou_nested.Rd |only bayesianOU-0.2.0/bayesianOU/man/fit_ou_nested_mi.Rd |only bayesianOU-0.2.0/bayesianOU/man/fit_ou_nonlinear_tmg.Rd | 86 - bayesianOU-0.2.0/bayesianOU/man/kappa_stability_evidence.Rd |only bayesianOU-0.2.0/bayesianOU/man/ou_geom_bridge.Rd |only bayesianOU-0.2.0/bayesianOU/man/ou_geom_hmc.Rd |only bayesianOU-0.2.0/bayesianOU/man/ou_geom_metric_euclidean.Rd |only bayesianOU-0.2.0/bayesianOU/man/ou_geom_metric_riemannian.Rd |only bayesianOU-0.2.0/bayesianOU/man/ou_geom_target.Rd |only bayesianOU-0.2.0/bayesianOU/man/ou_level_spec.Rd |only bayesianOU-0.2.0/bayesianOU/man/ou_nested_stan_code.Rd |only bayesianOU-0.2.0/bayesianOU/man/plot.ou_nested_2level.Rd |only bayesianOU-0.2.0/bayesianOU/man/plot.ou_nested_mi.Rd |only bayesianOU-0.2.0/bayesianOU/man/print.ou_nested_2level.Rd |only bayesianOU-0.2.0/bayesianOU/man/print.ou_nested_mi.Rd |only bayesianOU-0.2.0/bayesianOU/man/summary.ou_nested_2level.Rd |only bayesianOU-0.2.0/bayesianOU/man/summary.ou_nested_mi.Rd |only bayesianOU-0.2.0/bayesianOU/tests/testthat/fixtures |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-equivalence.R |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-extractors.R | 6 bayesianOU-0.2.0/bayesianOU/tests/testthat/test-geometry.R |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-golden-configs.R |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-level-spec.R |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-loo.R |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-mi-checkpoint.R |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-mi-imputation-inputs.R |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-nested-extractors.R |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-oos.R |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-recon-wiring.R |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-recovery-by-config.R |only bayesianOU-0.2.0/bayesianOU/tests/testthat/test-recovery.R |only bayesianOU-0.2.0/bayesianOU/vignettes |only 64 files changed, 2082 insertions(+), 2034 deletions(-)
Title: Importing, Constructing, and Exporting Bibliometric Networks
Description: Imports, constructs, and exports bibliometric networks from
scholarly metadata. Reads 'Scopus', 'Web of Science', 'BibTeX',
'RIS', 'OpenAlex', 'Lens.org', 'Dimensions', and 'Crossref'
exports. Goes beyond standard co-networks with attention-weighted
networks (lead, last, proximity, circular position weights),
position-aware counting (harmonic, arithmetic, geometric,
golden-ratio), similarity and dissimilarity normalisations,
temporal networks with fixed, sliding, and cumulative windows,
disparity-filter backbone extraction, historiograph construction,
and local citation scoring. Methods described in López-Pernas,
Saqr & Apiola (2023) <doi:10.1007/978-3-031-25336-2_5>.
Author: Mohammed Saqr [aut, cre, cph] ,
Sonsoles Lopez-Pernas [aut]
Maintainer: Mohammed Saqr <saqr@saqr.me>
Diff between bibnets versions 0.4.4 dated 2026-05-20 and 0.6.0 dated 2026-06-18
bibnets-0.4.4/bibnets/data/open_alex_gold_open_access_learning_analytics.rda |only bibnets-0.4.4/bibnets/man/open_alex_gold_open_access_learning_analytics.Rd |only bibnets-0.6.0/bibnets/DESCRIPTION | 6 bibnets-0.6.0/bibnets/MD5 | 108 bibnets-0.6.0/bibnets/NAMESPACE | 1 bibnets-0.6.0/bibnets/NEWS.md | 156 + bibnets-0.6.0/bibnets/R/author-network.R | 72 bibnets-0.6.0/bibnets/R/bipartite.R | 9 bibnets-0.6.0/bibnets/R/co-network.R | 73 bibnets-0.6.0/bibnets/R/counting.R | 5 bibnets-0.6.0/bibnets/R/country-network.R | 44 bibnets-0.6.0/bibnets/R/data.R | 11 bibnets-0.6.0/bibnets/R/document-network.R | 29 bibnets-0.6.0/bibnets/R/historiograph.R | 47 bibnets-0.6.0/bibnets/R/institution-network.R | 44 bibnets-0.6.0/bibnets/R/keyword-network.R | 42 bibnets-0.6.0/bibnets/R/parse-names.R |only bibnets-0.6.0/bibnets/R/read-biblio.R | 118 bibnets-0.6.0/bibnets/R/reference-network.R | 23 bibnets-0.6.0/bibnets/R/source-network.R | 44 bibnets-0.6.0/bibnets/R/utils.R | 64 bibnets-0.6.0/bibnets/build/vignette.rds |binary bibnets-0.6.0/bibnets/data/learning_analytics.rda |only bibnets-0.6.0/bibnets/inst/doc/attention.R |only bibnets-0.6.0/bibnets/inst/doc/attention.Rmd |only bibnets-0.6.0/bibnets/inst/doc/attention.html |only bibnets-0.6.0/bibnets/inst/doc/bibnets.R | 252 - bibnets-0.6.0/bibnets/inst/doc/bibnets.Rmd | 726 ++--- bibnets-0.6.0/bibnets/inst/doc/bibnets.html | 1399 +++++----- bibnets-0.6.0/bibnets/inst/doc/parsing-author-names.R |only bibnets-0.6.0/bibnets/inst/doc/parsing-author-names.Rmd |only bibnets-0.6.0/bibnets/inst/doc/parsing-author-names.html |only bibnets-0.6.0/bibnets/inst/doc/reading-data.R | 138 bibnets-0.6.0/bibnets/inst/doc/reading-data.Rmd | 398 +- bibnets-0.6.0/bibnets/inst/doc/reading-data.html | 735 +++-- bibnets-0.6.0/bibnets/man/author_network.Rd | 42 bibnets-0.6.0/bibnets/man/build_author_bipartite.Rd | 4 bibnets-0.6.0/bibnets/man/build_bipartite.Rd | 15 bibnets-0.6.0/bibnets/man/build_by_network.Rd | 3 bibnets-0.6.0/bibnets/man/conetwork.Rd | 13 bibnets-0.6.0/bibnets/man/country_network.Rd | 34 bibnets-0.6.0/bibnets/man/document_network.Rd | 25 bibnets-0.6.0/bibnets/man/ensure_list_column.Rd | 8 bibnets-0.6.0/bibnets/man/historiograph.Rd | 28 bibnets-0.6.0/bibnets/man/institution_network.Rd | 34 bibnets-0.6.0/bibnets/man/keyword_network.Rd | 33 bibnets-0.6.0/bibnets/man/learning_analytics.Rd |only bibnets-0.6.0/bibnets/man/local_citations.Rd | 26 bibnets-0.6.0/bibnets/man/parse_names.Rd |only bibnets-0.6.0/bibnets/man/read_biblio.Rd | 51 bibnets-0.6.0/bibnets/man/read_generic.Rd | 13 bibnets-0.6.0/bibnets/man/read_single_biblio.Rd | 15 bibnets-0.6.0/bibnets/man/reference_network.Rd | 25 bibnets-0.6.0/bibnets/man/resolve_id.Rd |only bibnets-0.6.0/bibnets/man/source_network.Rd | 27 bibnets-0.6.0/bibnets/man/strip_surrounding_quotes.Rd |only bibnets-0.6.0/bibnets/man/warn_if_sep_mismatch.Rd |only bibnets-0.6.0/bibnets/tests/testthat/test-custom-field-sep.R |only bibnets-0.6.0/bibnets/tests/testthat/test-id-resolution.R |only bibnets-0.6.0/bibnets/tests/testthat/test-parse-names.R |only bibnets-0.6.0/bibnets/tests/testthat/test-read-biblio.R | 83 bibnets-0.6.0/bibnets/vignettes/attention.Rmd |only bibnets-0.6.0/bibnets/vignettes/bibnets.Rmd | 726 ++--- bibnets-0.6.0/bibnets/vignettes/parsing-author-names.Rmd |only bibnets-0.6.0/bibnets/vignettes/reading-data.Rmd | 398 +- 65 files changed, 3779 insertions(+), 2368 deletions(-)
More information about transitiontrees at CRAN
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Title: Read bigWig and bigBed Files
Description: Read bigWig and bigBed files using "libBigWig"
<https://github.com/dpryan79/libBigWig>. Provides lightweight access
to the binary bigWig and bigBed formats developed by the UCSC Genome
Browser group.
Author: Jay Hesselberth [aut, cre],
RNA Bioscience Initiative [fnd, cph],
Devon Ryan [cph]
Maintainer: Jay Hesselberth <jay.hesselberth@gmail.com>
Diff between cpp11bigwig versions 0.1.3 dated 2025-12-11 and 0.2.0 dated 2026-06-18
cpp11bigwig-0.1.3/cpp11bigwig/src/Makevars |only cpp11bigwig-0.1.3/cpp11bigwig/src/Makevars.win |only cpp11bigwig-0.2.0/cpp11bigwig/DESCRIPTION | 12 - cpp11bigwig-0.2.0/cpp11bigwig/MD5 | 31 +-- cpp11bigwig-0.2.0/cpp11bigwig/NAMESPACE | 2 cpp11bigwig-0.2.0/cpp11bigwig/NEWS.md | 11 + cpp11bigwig-0.2.0/cpp11bigwig/R/cpp11.R | 4 cpp11bigwig-0.2.0/cpp11bigwig/R/read.r | 129 +++++++++++++-- cpp11bigwig-0.2.0/cpp11bigwig/cleanup |only cpp11bigwig-0.2.0/cpp11bigwig/configure |only cpp11bigwig-0.2.0/cpp11bigwig/configure.win |only cpp11bigwig-0.2.0/cpp11bigwig/man/read_bigbed.Rd | 4 cpp11bigwig-0.2.0/cpp11bigwig/man/read_bigwig.Rd | 36 +++- cpp11bigwig-0.2.0/cpp11bigwig/src/Makevars.in |only cpp11bigwig-0.2.0/cpp11bigwig/src/Makevars.win.in |only cpp11bigwig-0.2.0/cpp11bigwig/src/cpp11.cpp | 14 + cpp11bigwig-0.2.0/cpp11bigwig/src/cpp11bigwig.cpp | 19 ++ cpp11bigwig-0.2.0/cpp11bigwig/src/libBigWig/Makefile | 3 cpp11bigwig-0.2.0/cpp11bigwig/src/libBigWig/io.c | 6 cpp11bigwig-0.2.0/cpp11bigwig/tests/testthat/test-read.R | 83 +++++++++ 20 files changed, 309 insertions(+), 45 deletions(-)
Title: Easy Import of the EU Labour Market Policy Data
Description: European Commission's Labour Market Policy (LMP) database
(<https://webgate.ec.europa.eu/empl/redisstat/databrowser/explore/all/lmp?lang=en&display=card&sort=category>)
provides information on labour market interventions, which are government
actions to help and support the unemployed and other disadvantaged groups in
the transition from unemployment or inactivity to work. It covers the EU
countries and Norway. This package provides functions for downloading and
importing the LMP data and metadata (codelists).
Author: Aleksander Rutkowski [aut, cre]
Maintainer: Aleksander Rutkowski <alek.rutkowski@gmail.com>
Diff between LMPdata versions 0.2.0 dated 2025-01-30 and 0.2.1 dated 2026-06-18
DESCRIPTION | 10 - LICENSE | 4 MD5 | 16 +- NAMESPACE | 12 - R/lib.R | 401 ++++++++++++++++++++++++++++++++-------------------- README.md | 193 ++++++++++++------------- man/LMPdata.Rd | 16 +- man/importData.Rd | 82 +++++----- man/importLabels.Rd | 74 ++++----- 9 files changed, 459 insertions(+), 349 deletions(-)
Title: 'shiny' App for TRAPD/ISPOR Survey Translation with LLMs
Description: A 'shiny' application to automate forward and back survey translation
with optional reconciliation using large language models (LLMs). Supports
both item-by-item and batch translation modes for optimal performance and
context-aware translations. Handles multi-sheet Excel files and supports
OpenAI (GPT), Google Gemini, and Anthropic Claude models. Follows the
TRAPD (Translation, Review, Adjudication, Pretesting, Documentation)
framework and ISPOR (International Society for Pharmacoeconomics and
Outcomes Research) recommendations. See Harkness et al. (2010)
<doi:10.1002/9780470609927.ch7> and Wild et al. (2005)
<doi:10.1111/j.1524-4733.2005.04054.x>.
Author: Jonas R. Kunst [aut, cre]
Maintainer: Jonas R. Kunst <jonas.r.kunst@bi.no>
Diff between LLMTranslate versions 0.3.0 dated 2026-01-12 and 0.4.0 dated 2026-06-18
DESCRIPTION | 6 - MD5 | 10 +-- NEWS.md | 28 +++++++++ R/internal-helpers.R | 124 ++++++++++++++++++++++++++++++++++------ inst/app/app.R | 91 ++++++++++++++++++----------- tests/testthat/test-internals.R | 40 ++++++++++++ 6 files changed, 240 insertions(+), 59 deletions(-)
Title: Vector Field Visualizations with 'ggplot2'
Description: A 'ggplot2' extension for visualizing vector fields in two-dimensional
space. Provides flexible tools for creating vector and stream field layers,
visualizing gradients and potential fields, and smoothing vector and
scalar data to estimate underlying patterns.
Author: Dusty Turner [aut, cre],
David Kahle [aut],
Rodney X. Sturdivant [aut]
Maintainer: Dusty Turner <dusty.s.turner@gmail.com>
Diff between ggvfields versions 1.0.0 dated 2025-03-15 and 1.0.1 dated 2026-06-18
DESCRIPTION | 13 MD5 | 128 +++---- NAMESPACE | 10 NEWS.md | 11 R/efield.R | 18 - R/geom_gradient_field.R | 17 - R/geom_gradient_smooth.R | 2 R/geom_potential.R | 2 R/geom_stream.R | 71 +++- R/geom_stream_field.R | 71 +++- R/geom_stream_smooth.R | 88 ++++- R/geom_vector_field.R | 24 - R/geom_vector_smooth.R | 485 ++++++++++++++++++++++++++-- R/helper-functions.R | 342 -------------------- README.md | 485 ++++++++++++++-------------- man/efield.Rd | 10 man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-14-1.png |binary man/figures/README-unnamed-chunk-15-1.png |binary man/figures/README-unnamed-chunk-16-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-18-1.png |binary man/figures/README-unnamed-chunk-19-1.png |binary man/figures/README-unnamed-chunk-20-1.png |binary man/figures/README-unnamed-chunk-21-1.png |binary man/figures/README-unnamed-chunk-22-1.png |binary man/figures/README-unnamed-chunk-23-1.png |binary man/figures/README-unnamed-chunk-24-1.png |binary man/figures/README-unnamed-chunk-25-1.png |binary man/figures/README-unnamed-chunk-26-1.png |binary man/figures/README-unnamed-chunk-27-1.png |binary man/figures/README-unnamed-chunk-28-1.png |binary man/figures/README-unnamed-chunk-29-1.png |binary man/figures/README-unnamed-chunk-30-1.png |binary man/figures/README-unnamed-chunk-31-1.png |binary man/figures/README-unnamed-chunk-32-1.png |binary man/figures/README-unnamed-chunk-33-1.png |binary man/figures/README-unnamed-chunk-34-1.png |binary man/figures/README-unnamed-chunk-35-1.png |binary man/figures/README-unnamed-chunk-36-1.png |binary man/figures/README-unnamed-chunk-37-1.png |only man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/figures/ggvfields_hex.png |binary man/geom_gradient_field.Rd | 2 man/geom_gradient_smooth.Rd | 426 ++++++++++++------------- man/geom_potential.Rd | 2 man/geom_stream.Rd | 13 man/geom_stream_field.Rd | 2 man/geom_stream_smooth.Rd | 11 man/geom_vector.Rd | 506 +++++++++++++++--------------- man/geom_vector_field.Rd | 2 man/geom_vector_smooth.Rd | 381 +++++++++++----------- man/scale_length_continuous.Rd | 62 +-- tests/testthat.R | 24 - tests/testthat/Rplots.pdf |only tests/testthat/test-geom_stream.R | 14 tests/testthat/test-geom_stream_smooth.R | 34 +- tests/testthat/test-geom_vector_smooth.R | 11 66 files changed, 1758 insertions(+), 1509 deletions(-)
Title: Fast and Easy Eurostat Data Import and Search
Description: Interface to Eurostat’s API (SDMX 2.1) with fast data.table-based import of
data, labels, and metadata. On top of the core functionality, data search and data
description/comparison functions are also provided.
Use <https://github.com/alekrutkowski/eurodata_codegen> — a point-and-click app for rapid and
easy generation of richly-commented R code — to import a Eurostat dataset or its subset
(based on the eurodata::importData() function).
Author: Aleksander Rutkowski [aut, cre]
Maintainer: Aleksander Rutkowski <alek.rutkowski@gmail.com>
Diff between eurodata versions 1.7.0 dated 2023-05-06 and 1.8.0 dated 2026-06-18
DESCRIPTION | 12 ++--- MD5 | 6 +- R/core_import.R | 132 ++++++++++++++++++++++++++++++++++++++++++++------------ README.md | 8 +-- 4 files changed, 117 insertions(+), 41 deletions(-)
Title: Data Validation Based on 'YAML' Rules
Description: A comprehensive data validation package that allows comparing
datasets using configurable validation rules defined in 'YAML' files.
Built on top of the 'pointblank' package for robust data validation, it
supports exact matching, tolerance-based numeric comparisons, text
normalization, and row count validation.
Author: Vincent Guyader [cre, aut] ,
ThinkR [cph],
Agence technique de l'information sur l'hospitalisation [spn]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between datadiff versions 0.4.4 dated 2026-03-18 and 0.5.0 dated 2026-06-18
DESCRIPTION | 11 MD5 | 72 - NAMESPACE | 62 - NEWS.md | 585 +++++---- R/compare_datasets_from_yaml.R | 1183 ++++++++++--------- R/coverage.R |only R/duplicate_keys.R |only R/fast_path.R |only R/pointblank_setup.R | 279 ++-- R/report.R |only R/tolerance.R | 388 ++++-- R/utils.R | 85 - README.md | 60 - build/vignette.rds |binary inst/WORDLIST |only inst/doc/datadiff.R | 37 inst/doc/datadiff.Rmd | 119 + inst/doc/datadiff.html | 1037 +++++++++-------- man/compare_datasets_from_yaml.Rd | 231 ++- man/datadiff_report_html.Rd |only man/print.datadiff_coverage.Rd |only man/print.datadiff_report.Rd |only man/setup_pointblank_agent.Rd | 161 +- man/write_rules_template.Rd | 160 +- tests/testthat/helper-equivalence.R |only tests/testthat/test-coverage.R |only tests/testthat/test-duplicate-keys.R |only tests/testthat/test-edge-cases.R | 1636 +++++++++++++-------------- tests/testthat/test-equivalence-guard.R |only tests/testthat/test-fast_path.R |only tests/testthat/test-input-validation.R | 405 +++--- tests/testthat/test-internal-coverage.R |only tests/testthat/test-key-parameter.R | 656 +++++----- tests/testthat/test-lazy-sql-bool.R |only tests/testthat/test-lazy-tables.R | 1800 +++++++++++++++--------------- tests/testthat/test-main-integration.R | 645 +++++----- tests/testthat/test-main.R | 125 +- tests/testthat/test-pointblank-setup.R | 304 ++--- tests/testthat/test-report.R |only tests/testthat/test-row-validation.R | 274 ++-- tests/testthat/test-template-parameters.R | 388 +++--- tests/testthat/test-tolerance-kernel.R |only tests/testthat/test-tolerance-ok.R |only tests/testthat/test-tolerance.R | 2 tests/testthat/test-utils.R | 4 vignettes/datadiff.Rmd | 119 + 46 files changed, 5734 insertions(+), 5094 deletions(-)
More information about sdc.redistribute at CRAN
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Title: 'shiny' Applications for the 'tesselle' Packages
Description: A collection of 'shiny' applications for the 'tesselle'
packages <https://www.tesselle.org/>. This package provides
applications for archaeological data analysis and visualization. These
mainly, but not exclusively, include applications for chronological
modelling (e.g. matrix seriation, aoristic analysis) and count data
analysis (e.g. diversity measures, compositional data analysis).
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between kinesis versions 0.3.1 dated 2025-09-29 and 0.4.0 dated 2026-06-18
DESCRIPTION | 19 - MD5 | 202 ++++++++-------- NAMESPACE | 2 NEWS.md | 14 + R/aorisitc.R | 14 - R/ca.R | 20 - R/calibrate.R |only R/coda.R | 2 R/coda_hclust.R | 22 - R/coda_logratio.R | 5 R/coda_outliers.R | 4 R/coda_statistics.R | 11 R/count_diversity_alpha.R | 7 R/count_diversity_beta.R | 27 +- R/count_mcd.R | 13 - R/count_occurrence.R | 13 - R/graphics.R | 30 +- R/kinesis-internal.R | 30 -- R/kinesis-package.R | 8 R/lm.R | 2 R/multivariate.R | 19 + R/pca.R | 17 - R/prepare.R | 7 R/run.R | 26 +- R/seriate.R | 7 R/table.R | 114 +++++---- R/variables.R | 6 R/zzz.R | 7 README.md | 33 +- build/partial.rdb |binary inst/CITATION | 2 inst/app/radiocarbon |only inst/extdata/ksarakil.csv |only inst/po/fr/LC_MESSAGES/R-kinesis.mo |binary man/aoristic_server.Rd | 14 - man/aoristic_ui.Rd | 16 - man/bertin_server.Rd | 26 +- man/bertin_ui.Rd | 28 +- man/ca_server.Rd | 12 man/ca_ui.Rd | 14 - man/calibrate_server.Rd |only man/calibrate_ui.Rd |only man/coda_barplot_server.Rd | 28 +- man/coda_barplot_ui.Rd | 30 +- man/coda_hclust_server.Rd | 28 +- man/coda_hclust_ui.Rd | 30 +- man/coda_hist_server.Rd | 28 +- man/coda_hist_ui.Rd | 30 +- man/coda_outliers_server.Rd | 28 +- man/coda_outliers_ui.Rd | 30 +- man/coda_server.Rd | 28 +- man/coda_summary_server.Rd | 28 +- man/coda_summary_ui.Rd | 30 +- man/coda_ui.Rd | 30 +- man/count_server.Rd | 26 +- man/count_ui.Rd | 28 +- man/diversity_alpha_server.Rd | 26 +- man/diversity_alpha_ui.Rd | 28 +- man/diversity_beta_server.Rd | 26 +- man/diversity_beta_ui.Rd | 28 +- man/diversity_docs_ui.Rd | 28 +- man/diversity_server.Rd | 26 +- man/diversity_ui.Rd | 28 +- man/export_multiple.Rd |only man/export_table.Rd |only man/footer_server.Rd | 8 man/footer_ui.Rd | 10 man/get_option.Rd | 2 man/graphics_server.Rd | 14 - man/graphics_ui.Rd | 15 - man/home_server.Rd | 8 man/home_ui.Rd | 10 man/import_server.Rd | 8 man/import_ui.Rd | 8 man/kinesis-package.Rd | 17 - man/lm_server.Rd | 4 man/lm_ui.Rd | 6 man/logratio_server.Rd | 28 +- man/logratio_ui.Rd | 30 +- man/mcd_server.Rd | 4 man/mcd_ui.Rd | 6 man/multivariate_server.Rd | 14 - man/multivariate_ui.Rd | 14 - man/occurrence_server.Rd | 26 +- man/occurrence_ui.Rd | 28 +- man/output_plot.Rd | 6 man/pca_server.Rd | 12 man/pca_ui.Rd | 14 - man/prepare_server.Rd | 8 man/prepare_ui.Rd | 10 man/render_plot.Rd | 4 man/run_app.Rd | 29 +- man/scatter_server.Rd | 12 man/scatter_ui.Rd | 14 - man/selectize_ui.Rd | 4 man/seriate_server.Rd | 16 - man/seriate_ui.Rd | 16 - man/ternary_server.Rd | 12 man/ternary_ui.Rd | 14 - man/theme_ui.Rd | 2 man/time_interval_server.Rd | 14 - man/time_interval_ui.Rd | 16 - po/R-fr.po | 445 ++++++++++++++++++++++++------------ po/R-kinesis.pot | 432 +++++++++++++++++++++++----------- 104 files changed, 1523 insertions(+), 1202 deletions(-)
Title: Brain Atlas Data Structures for the 'ggsegverse' Ecosystem
Description: Provides the 'ggseg_atlas' S3 class used across the 'ggsegverse'
ecosystem for 2D and 3D brain visualisation. Ships four bundled atlases
('Desikan-Killiany', 'FreeSurfer' 'aseg', 'TRACULA', 'SUIT') and functions
for querying, subsetting, renaming, and enriching atlas objects. Also
includes readers for 'FreeSurfer' statistics files.
Author: Athanasia Mo Mowinckel [aut, cre] ,
Center for Lifespan Changes in Brain and Cognition , University
of Oslo [cph]
Maintainer: Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>
Diff between ggseg.formats versions 0.0.2 dated 2026-04-03 and 0.0.3 dated 2026-06-18
ggseg.formats-0.0.2/ggseg.formats/R/atlas-accessors.R |only ggseg.formats-0.0.2/ggseg.formats/R/atlas-convert.R |only ggseg.formats-0.0.2/ggseg.formats/R/atlas-utils.R |only ggseg.formats-0.0.2/ggseg.formats/R/brain-mesh.R |only ggseg.formats-0.0.2/ggseg.formats/R/ggseg.formats-package.R |only ggseg.formats-0.0.2/ggseg.formats/man/ggseg.Rd |only ggseg.formats-0.0.2/ggseg.formats/tests/testthat/_snaps |only ggseg.formats-0.0.2/ggseg.formats/tests/testthat/test-atlas-accessors.R |only ggseg.formats-0.0.2/ggseg.formats/tests/testthat/test-atlas-convert.R |only ggseg.formats-0.0.2/ggseg.formats/tests/testthat/test-atlas-utils.R |only ggseg.formats-0.0.2/ggseg.formats/tests/testthat/test-brain-mesh.R |only ggseg.formats-0.0.2/ggseg.formats/tests/testthat/test-read_freesurfer_stats.R |only ggseg.formats-0.0.3/ggseg.formats/DESCRIPTION | 24 ggseg.formats-0.0.3/ggseg.formats/MD5 | 165 +- ggseg.formats-0.0.3/ggseg.formats/NAMESPACE | 40 ggseg.formats-0.0.3/ggseg.formats/NEWS.md | 183 +++ ggseg.formats-0.0.3/ggseg.formats/R/atlas_accessors.R |only ggseg.formats-0.0.3/ggseg.formats/R/atlas_convert.R |only ggseg.formats-0.0.3/ggseg.formats/R/atlas_polygon_converters.R |only ggseg.formats-0.0.3/ggseg.formats/R/atlas_polygon_ops.R |only ggseg.formats-0.0.3/ggseg.formats/R/atlas_polygons.R |only ggseg.formats-0.0.3/ggseg.formats/R/atlas_utils.R |only ggseg.formats-0.0.3/ggseg.formats/R/atlases.R | 47 ggseg.formats-0.0.3/ggseg.formats/R/brain_mesh.R |only ggseg.formats-0.0.3/ggseg.formats/R/coercion.R | 103 + ggseg.formats-0.0.3/ggseg.formats/R/compat_dataframe.R |only ggseg.formats-0.0.3/ggseg.formats/R/ggseg.formats_package.R |only ggseg.formats-0.0.3/ggseg.formats/R/ggseg_atlas.R | 579 +++++++--- ggseg.formats-0.0.3/ggseg.formats/R/ggseg_atlas_data.R | 392 +++--- ggseg.formats-0.0.3/ggseg.formats/R/migrate_atlas_files.R |only ggseg.formats-0.0.3/ggseg.formats/R/read_freesurfer.R | 76 - ggseg.formats-0.0.3/ggseg.formats/R/sf_availability.R |only ggseg.formats-0.0.3/ggseg.formats/R/sysdata.rda |binary ggseg.formats-0.0.3/ggseg.formats/R/validation.R | 196 ++- ggseg.formats-0.0.3/ggseg.formats/README.md | 27 ggseg.formats-0.0.3/ggseg.formats/build/vignette.rds |binary ggseg.formats-0.0.3/ggseg.formats/inst/WORDLIST | 62 + ggseg.formats-0.0.3/ggseg.formats/inst/doc/atlas-manipulation.R | 4 ggseg.formats-0.0.3/ggseg.formats/inst/doc/atlas-manipulation.Rmd | 4 ggseg.formats-0.0.3/ggseg.formats/inst/doc/atlas-manipulation.html | 80 - ggseg.formats-0.0.3/ggseg.formats/inst/doc/ggseg.formats.R | 3 ggseg.formats-0.0.3/ggseg.formats/inst/doc/ggseg.formats.Rmd | 8 ggseg.formats-0.0.3/ggseg.formats/inst/doc/ggseg.formats.html | 491 +++++--- ggseg.formats-0.0.3/ggseg.formats/inst/doc/migrating-atlases.R |only ggseg.formats-0.0.3/ggseg.formats/inst/doc/migrating-atlases.Rmd |only ggseg.formats-0.0.3/ggseg.formats/inst/doc/migrating-atlases.html |only ggseg.formats-0.0.3/ggseg.formats/man/as_polygon_atlas.Rd |only ggseg.formats-0.0.3/ggseg.formats/man/as_sf_atlas.Rd |only ggseg.formats-0.0.3/ggseg.formats/man/aseg.Rd | 1 ggseg.formats-0.0.3/ggseg.formats/man/atlas_geom.Rd |only ggseg.formats-0.0.3/ggseg.formats/man/atlas_geometry_type.Rd |only ggseg.formats-0.0.3/ggseg.formats/man/atlas_labels.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/atlas_manipulation.Rd | 77 + ggseg.formats-0.0.3/ggseg.formats/man/atlas_meshes.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/atlas_palette.Rd | 7 ggseg.formats-0.0.3/ggseg.formats/man/atlas_polygons.Rd |only ggseg.formats-0.0.3/ggseg.formats/man/atlas_regions.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/atlas_sf.Rd | 6 ggseg.formats-0.0.3/ggseg.formats/man/atlas_type.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/atlas_vertices.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/atlas_views.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/convert_legacy_brain_atlas.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/dk.Rd | 1 ggseg.formats-0.0.3/ggseg.formats/man/figures/README-plot-aseg-1.png |binary ggseg.formats-0.0.3/ggseg.formats/man/figures/README-plot-dk-1.png |binary ggseg.formats-0.0.3/ggseg.formats/man/figures/README-plot-suit-1.png |only ggseg.formats-0.0.3/ggseg.formats/man/figures/README-plot-tracula-1.png |binary ggseg.formats-0.0.3/ggseg.formats/man/figures/README-subset-aseg-1.png |binary ggseg.formats-0.0.3/ggseg.formats/man/figures/logo.png |only ggseg.formats-0.0.3/ggseg.formats/man/get_brain_mesh.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/get_cerebellar_mesh.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/ggseg.formats-package.Rd |only ggseg.formats-0.0.3/ggseg.formats/man/ggseg_data_cerebellar.Rd | 20 ggseg.formats-0.0.3/ggseg.formats/man/ggseg_data_cortical.Rd | 14 ggseg.formats-0.0.3/ggseg.formats/man/ggseg_data_subcortical.Rd | 14 ggseg.formats-0.0.3/ggseg.formats/man/ggseg_data_tract.Rd | 15 ggseg.formats-0.0.3/ggseg.formats/man/migrate_atlas_files.Rd |only ggseg.formats-0.0.3/ggseg.formats/man/polygons_to_sf.Rd |only ggseg.formats-0.0.3/ggseg.formats/man/read_atlas_files.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/read_freesurfer_stats.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/read_freesurfer_table.Rd | 2 ggseg.formats-0.0.3/ggseg.formats/man/sf_to_polygons.Rd |only ggseg.formats-0.0.3/ggseg.formats/man/suit.Rd |only ggseg.formats-0.0.3/ggseg.formats/man/tracula.Rd | 3 ggseg.formats-0.0.3/ggseg.formats/tests/testthat/helper-graphics.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-atlas_accessors.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-atlas_convert.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-atlas_polygon_converters.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-atlas_polygon_ops.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-atlas_polygons.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-atlas_utils.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-atlases.R | 43 ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-brain_mesh.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-coercion.R | 32 ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-compat_dataframe.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-ggseg-atlas-plots.R | 125 +- ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-ggseg.formats_package.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-ggseg_atlas.R | 319 ++++- ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-ggseg_atlas_data.R | 116 +- ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-migrate_atlas_files.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-read_freesurfer.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-reposition-parity.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-sf_availability.R |only ggseg.formats-0.0.3/ggseg.formats/tests/testthat/test-validation.R | 63 - ggseg.formats-0.0.3/ggseg.formats/vignettes/atlas-manipulation.Rmd | 4 ggseg.formats-0.0.3/ggseg.formats/vignettes/ggseg.formats.Rmd | 8 ggseg.formats-0.0.3/ggseg.formats/vignettes/migrating-atlases.Rmd |only 107 files changed, 2341 insertions(+), 1035 deletions(-)
Title: Access 'umwelt.info' API
Description: Provides an R-based access to the datasets including their
resources from the portal <https://umwelt.info>. The package allows for
an easy integration of those datasets into your R-based workflows. The
functionality of the package mirrors the web-based access as provided
at <https://umwelt.info>. You can use the same queries and get the same
datasets by accessing our API.
Author: Johannes Vogel [aut, cre],
Maximilian Berthold [aut],
Luise Quoss [ctb],
Nationales Zentrum fuer Umwelt- und Naturschutzinformationen [cph]
Maintainer: Johannes Vogel <johannes.vogel@uba.de>
Diff between umweltapir versions 0.1.0 dated 2026-04-21 and 0.2.0 dated 2026-06-18
DESCRIPTION | 16 +++--- MD5 | 20 ++++---- NAMESPACE | 1 NEWS.md | 12 ++++ R/download_resources.R | 33 +++++++++---- R/fetch_api.R | 99 +++++++++++++++++++++++++--------------- README.md | 22 +++++--- man/download_resources.Rd | 13 ++--- man/fetch_data.Rd | 17 ++++-- man/umweltapir-package.Rd | 3 - tests/testthat/test-fetch_api.R | 67 +++++++++++++++++++++++++-- 11 files changed, 213 insertions(+), 90 deletions(-)
Title: Parse 'Tableau' Workbooks into Tidy Data and Dependency Graphs
Description: High-performance parsing of 'Tableau' workbook files into
tidy data frames and dependency graphs for other visualization tools
like R 'Shiny' or 'Power BI' replication, plus an interactive 'Shiny'
workbook inspector for uploaded .twb and .twbx files.
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between twbparser versions 0.4.0 dated 2026-04-13 and 0.5.0 dated 2026-06-18
DESCRIPTION | 15 - MD5 | 47 +-- NAMESPACE | 5 NEWS.md | 159 ++++++----- R/active-bindings.R | 9 R/analytics.R | 327 +++++++++++++++++------ R/app.R |only R/datasources.R | 28 + R/formatting.R |only R/insights.R | 13 R/report.R |only R/twb_parser.R | 52 ++- R/utils.R | 11 README.md | 449 +++++++++++++++++--------------- inst/WORDLIST | 39 +- inst/doc/twbparser-intro.html | 101 +++++-- inst/shiny |only man/TwbParser.Rd | 8 man/extract_datasource_details.Rd | 6 man/run_twbparser_app.Rd |only man/safe_call.Rd | 8 man/twb_dashboard_size.Rd |only man/twb_formatting.Rd |only man/twb_replication_brief.Rd | 4 man/twb_tooltips.Rd |only tests/testthat/test-active-bindings.R | 39 ++ tests/testthat/test-analytics.R | 49 ++- tests/testthat/test-dashboard-details.R | 10 tests/testthat/test-formatting.R |only 29 files changed, 904 insertions(+), 475 deletions(-)
Title: Processing of Accelerometry Data with 'GGIR' in mMARCH
Description: Mobile Motor Activity Research Consortium for Health (mMARCH) is a collaborative network of studies of clinical and community samples that employ common clinical, biological, and digital mobile measures across involved studies. One of the main scientific goals of mMARCH sites is developing a better understanding of the inter-relationships between accelerometry-measured physical activity (PA), sleep (SL), and circadian rhythmicity (CR) and mental and physical health in children, adolescents, and adults. Currently, there is no consensus on a standard procedure for a data processing pipeline of raw accelerometry data, and few open-source tools to facilitate their development. The R package 'GGIR' is the most prominent open-source software package that offers great functionality and tremendous user flexibility to process raw accelerometry data. However, even with 'GGIR', processing done in a harmonized and reproducible fashion requires a non-trivial amount of expertise combined with a care [...truncated...]
Author: Wei Guo [aut, cre],
Andrew Leroux [aut],
Vadim Zipunnikov [aut],
Kathleen Merikangas [aut]
Maintainer: Wei Guo <wei.guo3@nih.gov>
This is a re-admission after prior archival of version 3.3.4.0 dated 2026-02-05
Diff between mMARCH.AC versions 3.3.4.0 dated 2026-02-05 and 3.3.4.3 dated 2026-06-18
mMARCH.AC-3.3.4.0/mMARCH.AC/man/get_mean_sd_hour.Rd |only mMARCH.AC-3.3.4.3/mMARCH.AC/DESCRIPTION | 11 mMARCH.AC-3.3.4.3/mMARCH.AC/MD5 | 46 - mMARCH.AC-3.3.4.3/mMARCH.AC/NAMESPACE | 6 mMARCH.AC-3.3.4.3/mMARCH.AC/R/RA2.R | 73 -- mMARCH.AC-3.3.4.3/mMARCH.AC/R/Time2.R | 12 mMARCH.AC-3.3.4.3/mMARCH.AC/R/circular_time_mean_sd.R |only mMARCH.AC-3.3.4.3/mMARCH.AC/R/fragmentation2.R | 67 + mMARCH.AC-3.3.4.3/mMARCH.AC/R/module0_maincall.R | 8 mMARCH.AC-3.3.4.3/mMARCH.AC/build/vignette.rds |binary mMARCH.AC-3.3.4.3/mMARCH.AC/inst/doc/features.dictionary.xlsx |binary mMARCH.AC-3.3.4.3/mMARCH.AC/inst/doc/mMARCH.AC.Rmd | 2 mMARCH.AC-3.3.4.3/mMARCH.AC/inst/doc/mMARCH.AC.html | 22 mMARCH.AC-3.3.4.3/mMARCH.AC/inst/doc/mMARCH.AC.output.description.xlsx |binary mMARCH.AC-3.3.4.3/mMARCH.AC/inst/template/features.dictionary.xlsx |binary mMARCH.AC-3.3.4.3/mMARCH.AC/inst/template/module5_Data_process_report.Rmd | 227 +++--- mMARCH.AC-3.3.4.3/mMARCH.AC/inst/template/module6_NonWear.report.Rmd | 131 ++- mMARCH.AC-3.3.4.3/mMARCH.AC/inst/template/module7a_calculate_newfeatures.Rmd | 273 +++++--- mMARCH.AC-3.3.4.3/mMARCH.AC/inst/template/module7b_merge_GGIRfeatures.Rmd | 339 ++++++---- mMARCH.AC-3.3.4.3/mMARCH.AC/inst/template/module7c_runJIVE.Rmd | 195 ++++- mMARCH.AC-3.3.4.3/mMARCH.AC/inst/template/module7d_calculate_WD_WE_avg_features.Rmd | 309 ++++++--- mMARCH.AC-3.3.4.3/mMARCH.AC/man/circular_hour_center.Rd |only mMARCH.AC-3.3.4.3/mMARCH.AC/man/circular_time_mean_sd.Rd |only mMARCH.AC-3.3.4.3/mMARCH.AC/man/fragmentation2.Rd | 5 mMARCH.AC-3.3.4.3/mMARCH.AC/vignettes/mMARCH.AC.Rmd | 2 mMARCH.AC-3.3.4.3/mMARCH.AC/vignettes/mMARCH.AC.output.description.xlsx |binary 26 files changed, 1070 insertions(+), 658 deletions(-)
Title: Transforms Statistical Measures Commonly Used for Meta-Analysis
Description: Helps calculate statistical values commonly used in meta-analysis. It provides several methods to compute different forms of standardized mean differences, as well as other values such as standard errors and standard deviations.
The methods used in this package are described in the following references:
Altman D G, Bland J M. (2011) <doi:10.1136/bmj.d2090>
Borenstein, M., Hedges, L.V., Higgins, J.P.T. and Rothstein, H.R. (2009) <doi:10.1002/9780470743386.ch4>
Chinn S. (2000) <doi:10.1002/1097-0258(20001130)19:22%3C3127::aid-sim784%3E3.0.co;2-m>
Cochrane Handbook (2011) <https://www.cochrane.org/authors/handbooks-and-manuals/handbook/archive/v5.1.0>
Cooper, H., Hedges, L. V., & Valentine, J. C. (2009) <https://psycnet.apa.org/record/2009-05060-000>
Cohen, J. (1977) <https://psycnet.apa.org/record/1987-98267-000>
Ellis, P.D. (2009) <https://www.psychometrica.de/effect_size.html>
Goulet-Pelletier, J.-C., & Cousineau, D. (2018) <doi:10.2 [...truncated...]
Author: Robert Emprechtinger [aut, cre] ,
Guido Schwarzer [aut] ,
Ulf Toelch [aut],
Guenther Schreder [aut],
Gerald Gartlehner [aut]
Maintainer: Robert Emprechtinger <emprechtinger@stateofhealth.at>
Diff between metaHelper versions 1.0.0 dated 2024-07-28 and 1.0.1 dated 2026-06-18
DESCRIPTION | 23 - LICENSE | 4 MD5 | 67 +- NEWS.md | 12 R/ARD.R | 138 +++--- R/CI_from_proportions.R | 88 +-- R/SD.R | 681 +++++++++++++++--------------- R/SE.R | 436 ++++++++++--------- R/SMD.R | 364 ++++++++-------- R/check_data.R | 100 ++-- R/extend_var.R | 36 - R/hedges_factor.R | 90 +-- R/t_calc.R | 32 - R/utils-pipe.R | 26 - R/z_calc.R | 28 - README.md |only build |only inst |only man/SD_M_n_pooled_from_groups.Rd | 10 man/SD_from_CI.Rd | 22 man/SD_from_SE.Rd | 16 man/SDp_from_CIp.Rd | 8 man/SDp_from_SEp.Rd | 25 - man/SE.SMD_from_OR.CI.Rd | 72 +-- man/SE_from_SD.Rd | 2 man/SEp_from_CIp.Rd | 81 +-- man/SEp_from_SDp.Rd | 64 +- man/SEp_from_TE.p.Rd | 40 + man/SMD_from_group.Rd | 82 +-- man/SMD_from_mean.Rd | 2 tests/testthat/test-ARD.R | 60 +- tests/testthat/test-CI_from_proportions.R | 28 - tests/testthat/test-SD.R | 149 +++--- tests/testthat/test-SE.R | 122 ++--- tests/testthat/test-SMD.R | 72 +-- vignettes |only 36 files changed, 1525 insertions(+), 1455 deletions(-)
Title: Fast Conversion and Querying of Danish Registers with 'Parquet'
Description: Converts large Danish register files ('sas7bdat') into 'Parquet'
format with year-based 'Hive' partitioning and chunked reading for
larger-than-memory files. Supports parallel conversion with a 'targets'
pipeline and reading those registers into 'DuckDB' tables for faster
querying and analyses.
Author: Signe Kirk Broedbaek [aut, cre] ,
Luke Johnston [aut] ,
Steno Diabetes Center Aarhus [cph],
Aarhus University [cph]
Maintainer: Signe Kirk Broedbaek <signekb@clin.au.dk>
Diff between fastreg versions 0.13.8 dated 2026-06-12 and 0.14.1 dated 2026-06-18
DESCRIPTION | 6 - MD5 | 28 ++++---- NEWS.md | 18 +++++ R/convert.R | 32 ++++++++- R/use.R | 2 inst/doc/design.html | 114 ++++++++------------------------ inst/doc/design.qmd | 134 ++++++++++++++------------------------ inst/doc/fastreg.R | 13 +++ inst/doc/fastreg.html | 136 ++++++++++++++++++++++++--------------- inst/doc/fastreg.qmd | 86 +++++++++++++++++++----- inst/template-conversion-log.qmd | 27 ++++++- man/convert.Rd | 11 +++ tests/testthat/test-convert.R | 56 +++++++++++++++- vignettes/design.qmd | 134 ++++++++++++++------------------------ vignettes/fastreg.qmd | 86 +++++++++++++++++++----- 15 files changed, 520 insertions(+), 363 deletions(-)
Title: The Eigenvalues Entropy as a Classifier Evaluation Measure
Description: The confusion matrix (CM) is used to get a classifier's
evaluation measure in order to select a method among many.
A stochastic matrix and its transformation are computed from
the CM. The eigenvalues of the transformed symmetric matrix
are used to get an entropy which appears to be a good
evaluation measure. Many other measures, commonly used, are
provided for comparison purpose.
Author: Doulaye Dembele [aut, cre]
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>
Diff between eve versions 1.0 dated 2025-11-11 and 1.1 dated 2026-06-18
eve-1.0/eve/R/m2two.R |only eve-1.0/eve/man/m2two.Rd |only eve-1.1/eve/DESCRIPTION | 8 ++++---- eve-1.1/eve/MD5 | 28 ++++++++++++++++------------ eve-1.1/eve/NAMESPACE | 3 ++- eve-1.1/eve/R/eve.R | 9 +++++++-- eve-1.1/eve/R/eve.amat.R |only eve-1.1/eve/R/eve.bival.R | 6 ++++-- eve-1.1/eve/R/eve.bmat.R |only eve-1.1/eve/R/eve.bounds.R | 21 ++++++++++++--------- eve-1.1/eve/R/eve.eigens.R | 17 +++++++++-------- eve-1.1/eve/R/eve.mmatt.R | 16 ++++++++++------ eve-1.1/eve/R/m2two.a.R |only eve-1.1/eve/man/eve-package.Rd | 8 ++++---- eve-1.1/eve/man/eve.amat.Rd |only eve-1.1/eve/man/eve.bival.Rd | 5 +++-- eve-1.1/eve/man/eve.bmat.Rd |only eve-1.1/eve/man/eve.eigens.Rd | 5 ++--- eve-1.1/eve/man/m2two.a.Rd |only 19 files changed, 73 insertions(+), 53 deletions(-)
Title: Bayesian Rasch Analysis Using 'brms'
Description: Reproduces classic Rasch psychometric analysis features
using Bayesian item response theory models fitted with 'brms' following
Bürkner (2021) <doi:10.18637/jss.v100.i05> and Bürkner (2020) <doi:10.3390/jintelligence8010005>.
Supports both dichotomous and polytomous Rasch models.
Features include posterior predictive item fit, conditional infit, item-restscore
associations, person fit, differential item functioning, local dependence
assessment via Q3 residual correlations, dimensionality assessment with
residual principal components analysis, person-item targeting plots,
item category probability curves, and reliability using relative
measurement uncertainty following Bignardi et al. (2025) <doi:10.31234/osf.io/h54k8_v1>.
Author: Magnus Johansson [aut, cre] ,
Giacomo Bignardi [ctb] ,
Kristoffer Magnusson [ctb]
Maintainer: Magnus Johansson <pgmj@pm.me>
Diff between easyRaschBayes versions 0.2.0.1 dated 2026-04-23 and 0.3.0 dated 2026-06-18
DESCRIPTION | 19 +- MD5 | 29 ++- NAMESPACE | 18 ++ NEWS.md | 22 ++ R/brms_fitstats.R | 1 R/brms_hpcm.R |only R/person_parameters.R | 260 +++++++++++------------------------ R/post_helpers.R | 25 ++- README.md | 4 man/RMUreliability_hpcm.Rd |only man/easyRaschBayes-package.Rd | 3 man/hurdle_acat.Rd |only man/hurdle_acat_stanvars.Rd |only man/infit_statistic_hpcm.Rd |only man/item_parameters_hpcm.Rd |only man/log_lik_hurdle_acat.Rd |only man/person_parameters_hpcm.Rd |only man/plot_icc_hpcm.Rd |only man/plot_targeting_hpcm.Rd |only man/posterior_epred_hurdle_acat.Rd |only man/posterior_predict_hurdle_acat.Rd |only man/q3_statistic_hpcm.Rd |only 22 files changed, 186 insertions(+), 195 deletions(-)
More information about easyRaschBayes at CRAN
Permanent link
Title: Rank-Based Test to Evaluate a Surrogate Marker
Description: Uses a novel rank-based nonparametric approach to evaluate a surrogate marker
in a small sample size setting. Details are described in Parast et al (2024)
<doi:10.1093/biomtc/ujad035>, in Hughes A et al (2025)
<doi:10.1002/sim.70241>, and in Hughes A et al (2026) <doi:10.48550/arXiv.2605.03819>. A tutorial for this package can be found at
<https://www.laylaparast.com/surrogaterank> and a Shiny App
implementing the package can be found at
<https://parastlab.shinyapps.io/SurrogateRankApp/>.
Author: Layla Parast [aut, cre],
Arthur Hughes [aut]
Maintainer: Layla Parast <parast@austin.utexas.edu>
Diff between SurrogateRank versions 2.2 dated 2026-01-07 and 3.0 dated 2026-06-18
DESCRIPTION | 16 ++-- MD5 | 56 ++++++++++----- NAMESPACE | 15 +++- R/delta.calculate.extension.R | 6 + R/delta.reml.meta.R |only R/est.power.R | 6 - R/example.data.highdim.multistudy.R |only R/example.data.highdim.multistudy.ipd.R |only R/generate.example.data.highdim.R |only R/generate.example.data.highdim.multistudy.R |only R/generate.example.data.highdim.multistudy.ipd.R |only R/globals.R | 71 ++++++++++++++++++-- R/rise.evaluate.R | 6 - R/rise.evaluate.meta.R |only R/rise.screen.R | 41 +++++++++-- R/rise.screen.meta.R |only R/ss_functions.R | 12 +-- R/test.surrogate.extension.R | 5 - R/test.surrogate.rise.R | 6 - data/example.data.highdim.RData |binary data/example.data.highdim.multistudy.RData |only data/example.data.highdim.multistudy.ipd.RData |only man/delta.calculate.extension.Rd | 16 +++- man/delta.reml.meta.Rd |only man/est.power.Rd | 5 + man/example.data.highdim.Rd | 11 +-- man/example.data.highdim.multistudy.Rd |only man/example.data.highdim.multistudy.ipd.Rd |only man/generate.example.data.highdim.Rd |only man/generate.example.data.highdim.multistudy.Rd |only man/generate.example.data.highdim.multistudy.ipd.Rd |only man/rise.evaluate.Rd | 30 +++----- man/rise.evaluate.meta.Rd |only man/rise.screen.Rd | 19 +---- man/rise.screen.meta.Rd |only man/test.surrogate.Rd | 5 + man/test.surrogate.extension.Rd | 11 +-- man/test.surrogate.rise.Rd | 19 +---- 38 files changed, 242 insertions(+), 114 deletions(-)
Title: Concise and Efficient Tools for Everyday Statistical Production
Description: A set of concise and efficient tools for statistical production. Can also be used for data management.
In statistical production, you deal with complex data and need to control your process at each step of your work.
Concise functions are very helpful, because you do not hesitate to use them.
The following functions are included in the package.
'dup' checks duplicates.
'miss' checks missing values.
'tac' computes contingency table of all columns.
'toc' compares two tables, spotting significant deviations.
'chi2_find' compares columns within a data.frame, spotting related categories of (a more complex function).
Author: Vincent Reduron [cre, aut]
Maintainer: Vincent Reduron <vincent.reduron@laposte.net>
Diff between ProduceR versions 1.2 dated 2026-05-19 and 1.3 dated 2026-06-18
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 12 ++++++++++++ R/chi2_find.R | 42 ++++++++++++++++++++++-------------------- R/sums.R |only R/tac.R | 9 +++++---- R/utils.R | 3 ++- man/tac.Rd | 3 +++ 8 files changed, 54 insertions(+), 34 deletions(-)
More information about fable.intermittent at CRAN
Permanent link
Title: Ecological Trajectory Analysis
Description: Analysis of temporal changes (i.e. dynamics) of ecological entities, defined as trajectories on a chosen multivariate space, by providing a set of
trajectory metrics and visual representations [De Caceres et al. (2019) <doi:10.1002/ecm.1350>;
and Sturbois et al. (2021) <doi:10.1016/j.ecolmodel.2020.109400>; Djeghri et al. (2026a) <doi:10.1002/ecm.70058>; Djeghri et al. (2026b) <doi:10.24072/pcjournal.736>]. Includes functions
to estimate metrics for individual trajectories (length, directionality, angles, ...) as well as
metrics to relate pairs of trajectories (dissimilarity and convergence). Functions are also
provided to estimate the ecological quality of ecosystem with respect to reference conditions
[Sturbois et al. (2023) <doi:10.1002/ecs2.4726>].
Author: Miquel De Caceres [aut, cre] ,
Nicolas Djeghri [aut] ,
Anthony Sturbois [aut] ,
Javier De la Casa [ctb]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Diff between ecotraj versions 1.2.0 dated 2025-11-11 and 1.2.2 dated 2026-06-18
DESCRIPTION | 13 +- MD5 | 52 ++++----- NAMESPACE | 1 NEWS.md | 9 + R/ecotraj-package.R | 2 R/is.synchronous.R | 4 R/trajectoryComparison.R | 14 ++ R/trajectoryConvergencePlot.R | 2 R/trajectoryCyclical.R | 135 ++++++++++++++++--------- R/trajectoryCyclicalPlots.R | 2 R/trajectoryRMA.R | 21 ++- R/trajectoryRMAPlot.R | 52 +++++---- R/transformTrajectories.R | 156 ++++++++++++++++++++++++++--- build/partial.rdb |binary inst/CITATION | 34 +++++- man/ecotraj-package.Rd | 2 man/is.synchronous.Rd | 2 man/trajectoryComparison.Rd | 2 man/trajectoryConvergencePlot.Rd | 2 man/trajectoryCyclical.Rd | 15 ++ man/trajectoryCyclicalPlots.Rd | 2 man/trajectoryRMA.Rd | 12 +- man/trajectoryRMAPlot.Rd | 2 man/transformTrajectories.Rd | 34 +++++- tests/testthat/test_CETA.R | 21 +++ tests/testthat/test_ETA.R | 6 + tests/testthat/test_TrajectoryDefinition.R | 2 27 files changed, 441 insertions(+), 158 deletions(-)
Title: Polyhedra Database
Description: A polyhedra database scraped from various sources as R6 objects and 'rgl' visualizing capabilities.
Author: Alejandro Baranek [aut, com, cre, cph],
Leonardo Belen [aut, com, cph],
qbotics [cph],
Barret Schloerke [rev],
Lijia Yu [rev]
Maintainer: Alejandro Baranek <abaranek@dc.uba.ar>
This is a re-admission after prior archival of version 0.5.6 dated 2024-11-06
Diff between Rpolyhedra versions 0.5.6 dated 2024-11-06 and 0.6.0 dated 2026-06-18
DESCRIPTION | 11 MD5 | 284 R/package-lib.R | 3 R/polyhedra-lib.R | 2 R/test-lib.R | 38 README.md | 420 - build/vignette.rds |binary inst/doc/Rpolyhedra.R | 4 inst/doc/Rpolyhedra.Rmd | 178 inst/doc/Rpolyhedra.html | 7946 ++++++++++++++++++++++- inst/extdata/polyhedra.RDS |binary inst/extdata/polyhedra/dmccooey/1b53af19.RDS.zip |binary inst/extdata/polyhedra/dmccooey/2d13193a.RDS.zip |binary inst/extdata/polyhedra/dmccooey/75a525aa.RDS.zip |binary inst/extdata/polyhedra/dmccooey/98d9147f.RDS.zip |binary inst/extdata/polyhedra/dmccooey/9cfe921d.RDS.zip |binary inst/extdata/polyhedra/dmccooey/b844f693.RDS.zip |binary inst/extdata/polyhedra/dmccooey/c26dab1e.RDS.zip |binary inst/extdata/polyhedra/dmccooey/c2ed6fc0.RDS.zip |binary inst/extdata/polyhedra/dmccooey/cecb7eda.RDS.zip |binary inst/extdata/polyhedra/netlib/011e6aa5.RDS.zip |binary inst/extdata/polyhedra/netlib/013c8d56.RDS.zip |binary inst/extdata/polyhedra/netlib/018facb1.RDS.zip |binary 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Title: Query 'SWI'-'Prolog' from R
Description: This R package connects to SWI-Prolog, <https://www.swi-prolog.org/>, so that R can send deterministic and non-deterministic queries to prolog (consult, query/submit, once, findall).
Author: Matthias Gondan [aut, com, cre] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
This is a re-admission after prior archival of version 0.9.26 dated 2026-04-21
Diff between rolog versions 0.9.26 dated 2026-04-21 and 0.9.27 dated 2026-06-18
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/plbase.R | 30 ++++++++++++++++++++---------- build/vignette.rds |binary inst/doc/rolog.html | 15 ++++++++------- 6 files changed, 42 insertions(+), 27 deletions(-)
Title: A Lightweight Interface to NYC Open Data APIs
Description: Provides a unified set of helper functions to access datasets
from the NYC Open Data platform <https://opendata.cityofnewyork.us/>.
Functions return results as tidy tibbles and support optional filtering,
sorting, and row limits via the Socrata API. The package includes endpoints
for 311 service requests, DOB job applications, juvenile justice metrics,
school safety, environmental data, event permitting, and additional citywide datasets.
Author: Christian Martinez [aut, cre] ,
Crystal Adote [ctb] ,
Jonah Dratfield [ctb] ,
Joyce Escatel-Flores [ctb] ,
Rob Hutto [ctb] ,
Isley Jean-Pierre [ctb] ,
Shannon Joyce [ctb] ,
Laura Rose-Werner [ctb] ,
Emma Tupone [ctb] ,
Xinru Wang [ctb]
Maintainer: Christian Martinez <c.martinez0@outlook.com>
This is a re-admission after prior archival of version 0.2.1 dated 2026-04-11
Diff between nycOpenData versions 0.2.1 dated 2026-04-11 and 0.2.2 dated 2026-06-18
nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.R |only nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.Rmd |only nycOpenData-0.2.1/nycOpenData/inst/doc/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.html |only nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.R |only nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.Rmd |only nycOpenData-0.2.1/nycOpenData/inst/doc/Using-Local-Law18-Pay-Report.html |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.R |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.Rmd |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-borough-population.html |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.R |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.Rmd |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc-shooting-incidents.html |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.R |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.Rmd |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_events_sealevel.html |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.R |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.Rmd |only nycOpenData-0.2.1/nycOpenData/inst/doc/analyzing-nyc_wetlands.html |only nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.R |only nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.Rmd |only nycOpenData-0.2.1/nycOpenData/inst/doc/investigating-inmate-incidents.html |only nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.R |only nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.Rmd |only nycOpenData-0.2.1/nycOpenData/inst/doc/nyc_ha_violations.html |only nycOpenData-0.2.1/nycOpenData/tests |only nycOpenData-0.2.1/nycOpenData/vignettes/Analyzing-the-Local-Law-97-of-2021-Pets-in-Shelter-Report.Rmd |only nycOpenData-0.2.1/nycOpenData/vignettes/Using-Local-Law18-Pay-Report.Rmd |only nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc-borough-population.Rmd |only nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc-shooting-incidents.Rmd |only nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc_events_sealevel.Rmd |only nycOpenData-0.2.1/nycOpenData/vignettes/analyzing-nyc_wetlands.Rmd |only nycOpenData-0.2.1/nycOpenData/vignettes/investigating-inmate-incidents.Rmd |only nycOpenData-0.2.1/nycOpenData/vignettes/nyc_ha_violations.Rmd |only nycOpenData-0.2.2/nycOpenData/DESCRIPTION | 8 nycOpenData-0.2.2/nycOpenData/MD5 | 68 -- nycOpenData-0.2.2/nycOpenData/NEWS.md | 59 + nycOpenData-0.2.2/nycOpenData/R/nyc_any_dataset.R | 52 + nycOpenData-0.2.2/nycOpenData/R/nyc_list_datasets.R | 38 - nycOpenData-0.2.2/nycOpenData/R/nyc_pull_dataset.R | 117 ++- nycOpenData-0.2.2/nycOpenData/README.md | 311 +++++++--- nycOpenData-0.2.2/nycOpenData/build/vignette.rds |binary nycOpenData-0.2.2/nycOpenData/inst/CITATION | 4 nycOpenData-0.2.2/nycOpenData/inst/doc/getting-started.R | 8 nycOpenData-0.2.2/nycOpenData/inst/doc/getting-started.Rmd | 45 + nycOpenData-0.2.2/nycOpenData/inst/doc/getting-started.html | 98 +-- nycOpenData-0.2.2/nycOpenData/man/nyc_any_dataset.Rd | 52 + nycOpenData-0.2.2/nycOpenData/man/nyc_list_datasets.Rd | 37 - nycOpenData-0.2.2/nycOpenData/man/nyc_pull_dataset.Rd | 138 +++- nycOpenData-0.2.2/nycOpenData/vignettes/getting-started.Rmd | 45 + 49 files changed, 762 insertions(+), 318 deletions(-)
Title: Automatically Fetching References Metadata from Literature
Databases
Description: Provides functions to automatically retrieve and deduplicate reference metadata based on saved search strings. Access to Web of Science and Scopus requires personal API keys, while PubMed can be queried without one. The optional deduplication functionality requires the package 'ASySD' available from <https://github.com/camaradesuk/ASySD>.
Author: Thomas Dumond [cre, aut, cph] ,
Charles Caraguel [ctb] ,
Torben Nielsen [ctb]
Maintainer: Thomas Dumond <thomas.dumond@adelaide.edu.au>
Diff between LitFetchR versions 0.2.2 dated 2026-04-14 and 1.0.0 dated 2026-06-18
DESCRIPTION | 8 MD5 | 46 +-- NEWS.md | 43 +++ R/create_id_history.R | 21 + R/create_save_search.R | 130 ++++----- R/create_search_history.R | 33 -- R/dedup_refs.R | 2 R/extract_pmd_list.R | 295 ++++++++++----------- R/extract_scp_list.R | 552 ++++++++++++++++----------------------- R/extract_wos_list.R | 631 ++++++++++++++++++++++++++++----------------- R/http_helper.R | 51 ++- R/manual_fetch.R | 53 +-- R/save_api_key.R | 18 - inst/doc/Get_API_keys.Rmd | 4 inst/doc/Get_API_keys.html | 10 inst/doc/LitFetchr.R | 5 inst/doc/LitFetchr.Rmd | 15 + inst/doc/LitFetchr.html | 140 +++++---- man/extract_pmd_list.Rd | 4 man/extract_scp_list.Rd | 4 man/extract_wos_list.Rd | 6 man/save_api_keys.Rd | 20 + vignettes/Get_API_keys.Rmd | 4 vignettes/LitFetchr.Rmd | 15 + 24 files changed, 1177 insertions(+), 933 deletions(-)
Title: Shrinkage Estimation Methods for Vector Autoregressive Models
Description: Vector autoregressive (VAR) model is a fundamental and effective approach
for multivariate time series analysis. Shrinkage estimation methods can be
applied to high-dimensional VAR models with dimensionality greater than
the number of observations, contrary to the standard ordinary least squares
method. This package is an integrative package delivering nonparametric,
parametric, and semiparametric methods in a unified and consistent manner,
such as the multivariate ridge regression in Golub, Heath, and Wahba (1979)
<doi:10.2307/1268518>, a James-Stein type nonparametric shrinkage method in
Opgen-Rhein and Strimmer (2007) <doi:10.1186/1471-2105-8-S2-S3>, and
Bayesian estimation methods using noninformative and informative priors
in Lee, Choi, and S.-H. Kim (2016) <doi:10.1016/j.csda.2016.03.007> and
Ni and Sun (2005) <doi:10.1198/073500104000000622>.
Author: Namgil Lee [aut, cre, cph] ,
Heon Young Yang [ctb],
Sung-Ho Kim [aut, cph]
Maintainer: Namgil Lee <namgil.lee@kangwon.ac.kr>
Diff between VARshrink versions 0.3.3 dated 2026-01-09 and 0.5.0 dated 2026-06-18
VARshrink-0.3.3/VARshrink/R/calcSSE_Acoef.R |only VARshrink-0.3.3/VARshrink/R/causality_sh.R |only VARshrink-0.3.3/VARshrink/R/lm_full_Bayes_SR.R |only VARshrink-0.3.3/VARshrink/R/restrict_sh.R |only VARshrink-0.3.3/VARshrink/R/roots_sh.R |only VARshrink-0.3.3/VARshrink/man/calcSSE_Acoef.Rd |only VARshrink-0.3.3/VARshrink/man/causality_sh.Rd |only VARshrink-0.3.3/VARshrink/man/lm_full_Bayes_SR.Rd |only VARshrink-0.3.3/VARshrink/man/restrict_sh.Rd |only VARshrink-0.3.3/VARshrink/man/roots_sh.Rd |only VARshrink-0.5.0/VARshrink/DESCRIPTION | 18 VARshrink-0.5.0/VARshrink/MD5 | 55 - VARshrink-0.5.0/VARshrink/NAMESPACE | 5 VARshrink-0.5.0/VARshrink/R/Phi.varshrinkest.R | 2 VARshrink-0.5.0/VARshrink/R/Psi.varshrinkest.R | 18 VARshrink-0.5.0/VARshrink/R/VARshrink.R | 90 + VARshrink-0.5.0/VARshrink/R/convPsi2varresult.R | 19 VARshrink-0.5.0/VARshrink/R/irf.varshrinkest.R | 217 ++++ VARshrink-0.5.0/VARshrink/R/lm_full_Bayes.R |only VARshrink-0.5.0/VARshrink/R/serial.test_sh.R | 2 VARshrink-0.5.0/VARshrink/R/summary.varshrinkest.R | 5 VARshrink-0.5.0/VARshrink/README.md | 20 VARshrink-0.5.0/VARshrink/build/vignette.rds |binary VARshrink-0.5.0/VARshrink/inst/doc/article_html_varshrink.R | 60 - VARshrink-0.5.0/VARshrink/inst/doc/article_html_varshrink.Rmd | 217 +++- VARshrink-0.5.0/VARshrink/inst/doc/article_html_varshrink.html | 467 +++++----- VARshrink-0.5.0/VARshrink/man/Phi.varshrinkest.Rd | 2 VARshrink-0.5.0/VARshrink/man/Psi.varshrinkest.Rd |only VARshrink-0.5.0/VARshrink/man/VARshrink.Rd | 12 VARshrink-0.5.0/VARshrink/man/convPsi2varresult.Rd | 4 VARshrink-0.5.0/VARshrink/man/irf.varshrinkest.Rd | 20 VARshrink-0.5.0/VARshrink/man/lm_full_Bayes.Rd |only VARshrink-0.5.0/VARshrink/man/serial.test_sh.Rd | 2 VARshrink-0.5.0/VARshrink/man/summary.varshrinkest.Rd | 2 VARshrink-0.5.0/VARshrink/vignettes/article_html_varshrink.Rmd | 217 +++- 35 files changed, 991 insertions(+), 463 deletions(-)
Title: Multilevel Analysis of Individual Heterogeneity and
Discriminatory Accuracy
Description: Provides a comprehensive toolkit for conducting Multilevel Analysis
of Individual Heterogeneity and Discriminatory Accuracy (MAIHDA). Methods
are described in Merlo (2018) <doi:10.1016/j.socscimed.2017.12.026> and
Evans et al. (2018) <doi:10.1016/j.socscimed.2017.11.011>. Automatically
generates intersectional strata, fits analytical models, extracts statistics,
and produces visualizations.
Author: Hamid Bulut [aut, cre]
Maintainer: Hamid Bulut <me@hamidbulut.com>
Diff between MAIHDA versions 0.1.8 dated 2026-05-16 and 0.1.11 dated 2026-06-18
DESCRIPTION | 20 MD5 | 285 + NAMESPACE | 51 NEWS.md | 109 R/app_modules.R |only R/calculate_pvc.R | 700 ++-- R/compare_maihda.R | 1385 ++++++++ R/decompose_maihda.R |only R/design_weights.R |only R/discriminatory_accuracy.R |only R/fit_maihda.R | 853 ++++- R/information_criteria.R |only R/interactions.R |only R/longitudinal.R |only R/maihda_country_data.R |only R/maihda_health_data.R | 16 R/maihda_long_data.R |only R/maihda_sparse_data.R |only R/maihda_table.R |only R/maihda_ternary.R | 492 +-- R/maihda_workflow.R |only R/make_strata.R | 237 - R/ordinal_engine.R |only R/plot_maihda.R | 1252 ++++++- R/plot_prediction_deviation_panels.R | 690 ++-- R/predict_maihda.R | 221 - R/run_app.R | 682 +++- R/summary_maihda.R | 1125 ++++++ R/tidiers.R |only R/utils_maihda.R | 2764 ++++++++++++----- R/vpc_response.R |only README.md | 254 + build/vignette.rds |binary data/maihda_country_data.rda |only data/maihda_long_data.rda |only data/maihda_sparse_data.rda |only inst/CITATION | 26 inst/doc/bayesian_sparse_maihda.R |only inst/doc/bayesian_sparse_maihda.Rmd |only inst/doc/bayesian_sparse_maihda.html |only inst/doc/binary_outcomes.R |only inst/doc/binary_outcomes.Rmd |only inst/doc/binary_outcomes.html |only inst/doc/cross_classified.R |only inst/doc/cross_classified.Rmd |only inst/doc/cross_classified.html |only inst/doc/finding_interactions.R |only inst/doc/finding_interactions.Rmd |only inst/doc/finding_interactions.html |only inst/doc/group_comparison.R |only inst/doc/group_comparison.Rmd |only inst/doc/group_comparison.html |only inst/doc/interactive_app.Rmd | 10 inst/doc/interactive_app.html | 23 inst/doc/interpreting_plots.R |only inst/doc/interpreting_plots.Rmd |only inst/doc/interpreting_plots.html |only inst/doc/introduction.R | 162 inst/doc/introduction.Rmd | 338 +- inst/doc/introduction.html | 541 ++- inst/doc/longitudinal.R |only inst/doc/longitudinal.Rmd |only inst/doc/longitudinal.html |only inst/doc/planning_a_study.R |only inst/doc/planning_a_study.Rmd |only inst/doc/planning_a_study.html |only inst/doc/reporting_results.R |only inst/doc/reporting_results.Rmd |only inst/doc/reporting_results.html |only inst/examples/example_workflow.R | 28 inst/shiny/app.R | 1146 ++++--- inst/shiny/www |only man/MAIHDA-package.Rd | 52 man/add_stratum_labels.Rd | 40 man/bootstrap_cc.Rd |only man/bootstrap_context.Rd |only man/bootstrap_pvc.Rd | 48 man/bootstrap_vpc.Rd | 52 man/calculate_pvc.Rd | 163 - man/compare_maihda.Rd | 130 man/compare_maihda_groups.Rd |only man/compute_maihda_ternary_data.Rd | 3 man/extract_between_variance.Rd | 36 man/fit_maihda.Rd | 171 - man/maihda.Rd |only man/maihda_adjusted_formula.Rd |only man/maihda_adjusted_terms.Rd |only man/maihda_auc.Rd |only man/maihda_brms_weights_formula.Rd |only man/maihda_cc_summary_brms.Rd |only man/maihda_cc_summary_lme4.Rd |only man/maihda_clmm_linpred.Rd |only man/maihda_clmm_stratum_ranef.Rd |only man/maihda_clmm_thresholds.Rd |only man/maihda_clmm_variances.Rd |only man/maihda_compose_caption.Rd |only man/maihda_context_summary_brms.Rd |only man/maihda_context_summary_lme4.Rd |only man/maihda_country_data.Rd |only man/maihda_cross_classified_formula.Rd |only man/maihda_cumulative.Rd |only man/maihda_discriminatory_accuracy.Rd |only man/maihda_fit_clmm.Rd |only man/maihda_fit_wemix.Rd |only man/maihda_glance.Rd |only man/maihda_health_data.Rd | 8 man/maihda_ic.Rd |only man/maihda_ic_one.Rd |only man/maihda_interactions.Rd |only man/maihda_long_data.Rd |only man/maihda_longitudinal_adjusted_formula.Rd |only man/maihda_longitudinal_formula.Rd |only man/maihda_longitudinal_pcv.Rd |only man/maihda_longitudinal_strata_predictions.Rd |only man/maihda_longitudinal_summary_brms.Rd |only man/maihda_longitudinal_summary_lme4.Rd |only man/maihda_mor.Rd |only man/maihda_ordinal_category_probs.Rd |only man/maihda_ordinal_eta_to_score.Rd |only man/maihda_ordinal_expected_score.Rd |only man/maihda_prepare_brms_sampling_weights.Rd |only man/maihda_prepare_group_strata.Rd |only man/maihda_print_cc_decomposition.Rd |only man/maihda_print_context_partition.Rd |only man/maihda_sparse_data.Rd |only man/maihda_stratum_predictions_ordinal.Rd |only man/maihda_stratum_predictions_wemix.Rd |only man/maihda_table.Rd |only man/maihda_ternary_plot.Rd | 6 man/maihda_tidiers.Rd |only man/maihda_validate_longitudinal.Rd |only man/maihda_validate_sampling_weights.Rd |only man/maihda_vpc_response.Rd |only man/maihda_wemix_linpred.Rd |only man/maihda_wemix_stratum_ranef.Rd |only man/maihda_wemix_variances.Rd |only man/make_strata.Rd | 101 man/plot.maihda_analysis.Rd |only man/plot.maihda_comparison.Rd |only man/plot.maihda_group_comparison.Rd |only man/plot.maihda_model.Rd | 158 man/plot.maihda_ternary.Rd |only man/plot_comparison.Rd | 50 man/plot_context_vpc.Rd |only man/plot_effect_decomposition.Rd | 55 man/plot_group_comparison.Rd |only man/plot_maihda_ternary.Rd | 25 man/plot_obs_vs_shrunken.Rd | 49 man/plot_pcv_trajectory.Rd |only man/plot_predicted_strata.Rd | 59 man/plot_prediction_deviation_panels.Rd | 87 man/plot_risk_vs_effect.Rd | 51 man/plot_stratum_trajectories.Rd |only man/plot_vpc.Rd | 36 man/plot_vpc_trajectory.Rd |only man/predict_maihda.Rd | 123 man/print.maihda_analysis.Rd |only man/print.maihda_group_comparison.Rd |only man/print.maihda_ic.Rd |only man/print.maihda_interactions.Rd |only man/print.maihda_long_pcv.Rd |only man/print.maihda_model.Rd | 38 man/print.maihda_stepwise.Rd |only man/print.maihda_strata.Rd | 38 man/print.maihda_summary.Rd | 38 man/print.maihda_table.Rd |only man/print.pvc_result.Rd | 38 man/reexports.Rd |only man/run_maihda_app.Rd | 42 man/stepwise_pcv.Rd | 127 man/summary.maihda_analysis.Rd |only man/summary.maihda_model.Rd | 177 - tests/testthat.R | 24 tests/testthat/test-auto_detect_family.R | 42 tests/testthat/test-calculate_pvc.R | 114 tests/testthat/test-compare_maihda.R | 125 tests/testthat/test-compare_maihda_groups.R |only tests/testthat/test-contextual.R |only tests/testthat/test-correctness-regressions.R | 1312 +++++--- tests/testthat/test-country_data.R |only tests/testthat/test-cross-classified.R |only tests/testthat/test-design-weights.R |only tests/testthat/test-discriminatory-accuracy.R |only tests/testthat/test-fit_maihda.R | 189 + tests/testthat/test-health_data.R | 44 tests/testthat/test-information_criteria.R |only tests/testthat/test-interactions.R |only tests/testthat/test-longitudinal.R |only tests/testthat/test-maihda-ternary.R | 101 tests/testthat/test-maihda-workflow.R |only tests/testthat/test-maihda_table.R |only tests/testthat/test-make_strata.R | 62 tests/testthat/test-negbinomial.R |only tests/testthat/test-ordinal-engine.R |only tests/testthat/test-plot_predicted.R | 122 tests/testthat/test-plot_prediction_deviation_panels.R | 321 + tests/testthat/test-run_app.R | 785 ++++ tests/testthat/test-summary_variance.R | 298 + tests/testthat/test-tidiers.R |only tests/testthat/test-vpc-response.R |only vignettes/bayesian_sparse_maihda.Rmd |only vignettes/binary_outcomes.Rmd |only vignettes/cross_classified.Rmd |only vignettes/figures/ess_additivity.png |only vignettes/figures/ess_country.png |only vignettes/figures/ess_effect_decomp.png |only vignettes/figures/ess_neet_brms.png |only vignettes/figures/ess_partition.png |only vignettes/finding_interactions.Rmd |only vignettes/group_comparison.Rmd |only vignettes/interactive_app.Rmd | 10 vignettes/interpreting_plots.Rmd |only vignettes/introduction.Rmd | 338 +- vignettes/longitudinal.Rmd |only vignettes/planning_a_study.Rmd |only vignettes/reporting_results.Rmd |only vignettes/sparse_precomputed.rds |only 217 files changed, 14359 insertions(+), 4939 deletions(-)
Title: Automated Data Quality Checks for Recurring Dataset Deliveries
Description: Automates quality verification of recurring external dataset deliveries.
For each new file arrival, it runs single-snapshot quality checks, compares
the file to the previous delivery, writes a self-contained 'HTML' report, and
records summary statistics in a local 'SQLite' database for long-term trend
tracking. Supports 'CSV' and fixed-width formats. Custom organisation-specific
checks can be supplied as plain R files.
Author: Mick Mioduszewski [aut, cre]
Maintainer: Mick Mioduszewski <mick@mioduszewski.net>
Diff between dqcheckr versions 0.2.1 dated 2026-06-08 and 0.2.2 dated 2026-06-18
DESCRIPTION | 8 - MD5 | 27 ++-- NEWS.md | 22 +++ R/dqcheckr-package.R | 1 R/ingest.R | 9 + inst/doc/dqcheckr.Rmd | 19 ++ inst/doc/dqcheckr.html | 285 ++++++++++++++++++++++--------------------- inst/doc/specification.Rmd | 6 inst/doc/specification.html | 88 +++++++------ man/dqcheckr-package.Rd |only man/read_dataset.Rd | 8 - tests/testthat/test-ingest.R | 38 +++++ tests/testthat/test-utils.R | 3 vignettes/dqcheckr.Rmd | 19 ++ vignettes/specification.Rmd | 6 15 files changed, 342 insertions(+), 197 deletions(-)
Title: Multicountry Term Structure of Interest Rates Models
Description: Package for estimating, analyzing, and forecasting multi-country macro-finance affine term structure models (ATSMs). All setups build on the single-country unspanned macroeconomic risk framework from Joslin, Priebsch, and Singleton (2014, JF) <doi:10.1111/jofi.12131>. Multicountry extensions by Jotikasthira, Le, and Lundblad (2015, JFE) <doi:10.1016/j.jfineco.2014.09.004>, Candelon and Moura (2023, EM) <doi:10.1016/j.econmod.2023.106453>, and Candelon and Moura (2024, JFEC) <doi:10.1093/jjfinec/nbae008> are also available. The package also provides tools for bias correction as in Bauer Rudebusch and Wu (2012, JBES) <doi:10.1080/07350015.2012.693855>, bootstrap analysis, and several graphical/numerical outputs.
Author: Rubens Moura [aut, cre]
Maintainer: Rubens Moura <rubens.gtmoura@gmail.com>
Diff between MultiATSM versions 1.5.1-1 dated 2026-02-26 and 1.5.1-2 dated 2026-06-18
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- R/NumOutputs.R | 24 ++++++++++--- inst/doc/MultiATSM.html | 4 +- inst/doc/Paper-Replications.html | 4 +- tests/testthat/Rplots.pdf |binary tests/testthat/test_Opt_NumOut_Boot_Graphs_Forecast_GVAR.R | 4 +- tests/testthat/test_Opt_NumOut_Boot_Graphs_Forecast_JLL.R | 4 +- tests/testthat/test_Opt_NumOut_Boot_Graphs_Forecast_JPS.R | 2 - 9 files changed, 40 insertions(+), 26 deletions(-)
Title: Gradient Projection Factor Rotation
Description: Gradient projection algorithms for orthogonal and oblique rotation
of factor loadings matrices in factor analysis. Implements a comprehensive
set of rotation criteria including quartimax, quartimin, oblimin, geomin,
simplimax, the Crawford-Ferguson family, and target rotation, among others.
Supports multiple random starts. For details see Bernaards and Jennrich (2005)
<doi:10.1177/0013164404272507>.
Author: Coen Bernaards [aut, cre],
Paul Gilbert [aut],
Robert Jennrich [aut]
Maintainer: Coen Bernaards <cab.gparotation@gmail.com>
Diff between GPArotation versions 2026.4-1 dated 2026-04-29 and 2026.6-1 dated 2026-06-18
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Title: A Simple Package for Testing R Packages
Description: A minimal, dependency-free testing framework for R packages.
Write tests as simple R expressions that return TRUE, using assert() for
assertions (with informative error messages on failure), has_error() /
has_warning() / has_message() for testing conditions, and test_pkg() to
run all tests with full access to internal (non-exported) package
functions. Snapshot testing via Markdown files is also supported.
Author: Yihui Xie [aut, cre] ,
Tomas Kalibera [ctb],
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 1.0 dated 2026-05-13 and 1.1 dated 2026-06-18
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/testit.R | 11 ++++++++--- man/test_pkg.Rd | 8 +++++--- tests/testit/test-testit.R | 27 +++++++++++++++++++++++++++ 5 files changed, 47 insertions(+), 13 deletions(-)
Title: Quick Wraps 2
Description: A collection of (wrapper) functions the creator found useful
for quickly placing data summaries and formatted regression results into
'.Rnw' or '.Rmd' files. Functions for generating commonly used graphics,
such as receiver operating curves or Bland-Altman plots, are also provided
by 'qwraps2'. 'qwraps2' is an updated version of a package 'qwraps'. The
original version 'qwraps' was never submitted to CRAN but can be found at
<https://github.com/dewittpe/qwraps/>. The implementation and limited scope
of the functions within 'qwraps2' <https://github.com/dewittpe/qwraps2/> is
fundamentally different from 'qwraps'.
Author: Peter DeWitt [aut, cre] ,
Tell Bennett [ctb]
Maintainer: Peter DeWitt <dewittpe@gmail.com>
Diff between qwraps2 versions 0.6.2 dated 2026-02-28 and 0.6.3 dated 2026-06-18
qwraps2-0.6.2/qwraps2/inst/templates |only qwraps2-0.6.2/qwraps2/man/deprecated.Rd |only qwraps2-0.6.2/qwraps2/src/logit.cpp |only qwraps2-0.6.3/qwraps2/DESCRIPTION | 13 qwraps2-0.6.3/qwraps2/MD5 | 137 ++-- qwraps2-0.6.3/qwraps2/NAMESPACE | 4 qwraps2-0.6.3/qwraps2/NEWS.md | 55 + qwraps2-0.6.3/qwraps2/R/RcppExports.R | 52 - qwraps2-0.6.3/qwraps2/R/confusion_matrix.R | 30 qwraps2-0.6.3/qwraps2/R/deprecated.R | 69 +- qwraps2-0.6.3/qwraps2/R/file-check.R | 6 qwraps2-0.6.3/qwraps2/R/frmt.R | 16 qwraps2-0.6.3/qwraps2/R/geometric_mean_sd.R | 7 qwraps2-0.6.3/qwraps2/R/lazyload_cache.R | 23 qwraps2-0.6.3/qwraps2/R/mean_se.R | 3 qwraps2-0.6.3/qwraps2/R/n_perc.R | 2 qwraps2-0.6.3/qwraps2/R/qable.R | 22 qwraps2-0.6.3/qwraps2/R/qkmplot.R | 58 + qwraps2-0.6.3/qwraps2/R/qroc.R | 2 qwraps2-0.6.3/qwraps2/R/qwraps2-package.R | 72 +- qwraps2-0.6.3/qwraps2/R/set_diff.R | 25 qwraps2-0.6.3/qwraps2/R/summary_table.R | 130 ++-- qwraps2-0.6.3/qwraps2/build/vignette.rds |binary qwraps2-0.6.3/qwraps2/data/mtcars2.rda |binary qwraps2-0.6.3/qwraps2/data/pefr.rda |binary qwraps2-0.6.3/qwraps2/data/spambase.rda |binary qwraps2-0.6.3/qwraps2/inst/WORDLIST | 107 +-- qwraps2-0.6.3/qwraps2/inst/doc/qwraps2-data-sets.Rmd | 14 qwraps2-0.6.3/qwraps2/inst/doc/qwraps2-data-sets.html | 48 - qwraps2-0.6.3/qwraps2/inst/doc/qwraps2-formatted-summary-statistics.R | 12 qwraps2-0.6.3/qwraps2/inst/doc/qwraps2-formatted-summary-statistics.Rmd | 38 - qwraps2-0.6.3/qwraps2/inst/doc/qwraps2-formatted-summary-statistics.html | 78 +- qwraps2-0.6.3/qwraps2/inst/doc/qwraps2-graphics.R | 38 - qwraps2-0.6.3/qwraps2/inst/doc/qwraps2-graphics.Rmd | 67 +- qwraps2-0.6.3/qwraps2/inst/doc/qwraps2-graphics.html | 308 ++++------ qwraps2-0.6.3/qwraps2/inst/doc/qwraps2-summary-table.Rmd | 22 qwraps2-0.6.3/qwraps2/inst/doc/qwraps2-summary-table.html | 62 +- qwraps2-0.6.3/qwraps2/man/Rpkg.Rd | 3 qwraps2-0.6.3/qwraps2/man/StatStepribbon.Rd | 2 qwraps2-0.6.3/qwraps2/man/backtick.Rd | 2 qwraps2-0.6.3/qwraps2/man/confusion_matrix.Rd | 2 qwraps2-0.6.3/qwraps2/man/file_check.Rd | 2 qwraps2-0.6.3/qwraps2/man/frmt.Rd | 8 qwraps2-0.6.3/qwraps2/man/gmean.Rd | 6 qwraps2-0.6.3/qwraps2/man/lazyload_cache.Rd | 22 qwraps2-0.6.3/qwraps2/man/logit.Rd | 44 - qwraps2-0.6.3/qwraps2/man/n_perc.Rd | 2 qwraps2-0.6.3/qwraps2/man/qable.Rd | 8 qwraps2-0.6.3/qwraps2/man/qkmplot.Rd | 50 - qwraps2-0.6.3/qwraps2/man/qkmplot_bulid_data_frame.Rd |only qwraps2-0.6.3/qwraps2/man/qroc-qprc.Rd | 2 qwraps2-0.6.3/qwraps2/man/qroc_build_data_frame.Rd |only qwraps2-0.6.3/qwraps2/man/qwraps2-package.Rd | 76 +- qwraps2-0.6.3/qwraps2/man/set_diff.Rd | 19 qwraps2-0.6.3/qwraps2/man/summary_table.Rd | 127 ++-- qwraps2-0.6.3/qwraps2/src/RcppExports.cpp | 24 qwraps2-0.6.3/qwraps2/tests/test-confusion_matrix.R | 29 qwraps2-0.6.3/qwraps2/tests/test-file-check.R | 4 qwraps2-0.6.3/qwraps2/tests/test-logit.R | 8 qwraps2-0.6.3/qwraps2/tests/test-pkg_check.R | 3 qwraps2-0.6.3/qwraps2/tests/test-plots.R | 6 qwraps2-0.6.3/qwraps2/tests/test-qable.R | 12 qwraps2-0.6.3/qwraps2/tests/test-qkplot.R | 20 qwraps2-0.6.3/qwraps2/tests/test-set_diff.R | 15 qwraps2-0.6.3/qwraps2/tests/test-summary_table.R | 34 - qwraps2-0.6.3/qwraps2/vignettes/qwraps2-data-sets.Rmd | 14 qwraps2-0.6.3/qwraps2/vignettes/qwraps2-formatted-summary-statistics.Rmd | 38 - qwraps2-0.6.3/qwraps2/vignettes/qwraps2-graphics.Rmd | 67 +- qwraps2-0.6.3/qwraps2/vignettes/qwraps2-summary-table.Rmd | 22 69 files changed, 1198 insertions(+), 993 deletions(-)
Title: Miscellaneous Utilities and Functions
Description: Miscellaneous tools and functions,
including: generate descriptive statistics tables,
format output, visualize relations among variables or check
distributions, and generic functions for residual and
model diagnostics.
Author: Joshua F. Wiley [aut, cre]
Maintainer: Joshua F. Wiley <jwiley.psych@gmail.com>
Diff between JWileymisc versions 1.4.4 dated 2025-09-06 and 1.4.5 dated 2026-06-18
DESCRIPTION | 14 - MD5 | 35 ++- NAMESPACE | 1 NEWS.md | 6 R/geoms_themes.R | 5 R/models.R | 61 +++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/diagnostics-vignette.html | 26 +- inst/doc/exploratory-vignette.html | 278 +++++++++++++-------------- inst/doc/model-test-vignette.html | 7 man/geom_tufterange.Rd | 10 tests/testthat/test-SEMSummary.R | 5 tests/testthat/test-coverage-descriptives.R |only tests/testthat/test-coverage-diagnostics.R |only tests/testthat/test-coverage-models.R |only tests/testthat/test-coverage-plots.R |only tests/testthat/test-coverage-styler.R |only tests/testthat/test-coverage-utils.R |only tests/testthat/test-coverage-visual-acuity.R |only tests/testthat/test-descriptives-helpers.R | 2 tests/testthat/test-scoring.R | 8 22 files changed, 241 insertions(+), 217 deletions(-)
Title: Classes and Methods for Seismic Data Analysis
Description: Provides classes and methods for seismic data analysis. The
base classes and methods are inspired by the python code found in
the 'ObsPy' python toolbox <https://github.com/obspy/obspy>. Additional classes and
methods support data returned by web services provided by the EarthScope Consortium.
<https://service.earthscope.org/>.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Gillian Sharer [aut, cre],
Mary Templeton [aut],
Chad Trabant [ctb]
Maintainer: Gillian Sharer <gillian.sharer@earthscope.org>
Diff between IRISSeismic versions 1.8.0 dated 2026-03-19 and 1.9.0 dated 2026-06-18
IRISSeismic-1.8.0/IRISSeismic/src/libmseed2 |only IRISSeismic-1.9.0/IRISSeismic/DESCRIPTION | 6 IRISSeismic-1.9.0/IRISSeismic/MD5 | 161 ---------- IRISSeismic-1.9.0/IRISSeismic/R/Class-IrisClient.R | 29 + IRISSeismic-1.9.0/IRISSeismic/inst/doc/IRISSeismic-intro.R | 12 IRISSeismic-1.9.0/IRISSeismic/inst/doc/IRISSeismic-intro.Rmd | 46 -- IRISSeismic-1.9.0/IRISSeismic/inst/doc/IRISSeismic-intro.html | 59 --- IRISSeismic-1.9.0/IRISSeismic/man/IRISSeismic-deprecated.Rd |only IRISSeismic-1.9.0/IRISSeismic/man/IRISSeismic-package.Rd | 5 IRISSeismic-1.9.0/IRISSeismic/man/IrisClient-class.Rd | 4 IRISSeismic-1.9.0/IRISSeismic/man/getAvailability.Rd | 4 IRISSeismic-1.9.0/IRISSeismic/man/getTraveltime.Rd | 8 IRISSeismic-1.9.0/IRISSeismic/man/getUnavailability.Rd | 4 IRISSeismic-1.9.0/IRISSeismic/vignettes/IRISSeismic-intro.Rmd | 46 -- 14 files changed, 66 insertions(+), 318 deletions(-)
Title: Process Analysis for Exponential Random Graph Models
Description: Calculates marginal effects and conducts process analysis in exponential family random graph models (ERGM).
Includes functions to conduct mediation and moderation analyses and to diagnose
multicollinearity.
URL: <https://github.com/sduxbury/ergMargins>.
BugReports: <https://github.com/sduxbury/ergMargins/issues>.
Duxbury, Scott W (2021) <doi:10.1177/0049124120986178>.
Long, J. Scott, and Sarah Mustillo (2018) <doi:10.1177/0049124118799374>.
Mize, Trenton D. (2019) <doi:10.15195/v6.a4>.
Karlson, Kristian Bernt, Anders Holm, and Richard Breen (2012) <doi:10.1177/0081175012444861>.
Duxbury, Scott W (2018) <doi:10.1177/0049124118782543>.
Duxbury, Scott W, Jenna Wertsching (2023) <doi:10.1016/j.socnet.2023.02.003>.
Huang, Peng, Carter Butts (2023) <doi:10.1016/j.socnet.2023.07.001>.
Author: Scott Duxbury [aut, cre, cph]
Maintainer: Scott Duxbury <duxbury@email.unc.edu>
Diff between ergMargins versions 1.6.1 dated 2025-09-13 and 1.6.2 dated 2026-06-18
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/ergm.MSE.R | 2 +- man/ergm.msma.Rd | 2 +- man/ergmMSE.Rd | 2 +- 5 files changed, 10 insertions(+), 10 deletions(-)
Title: Summarise Patient-Level Drug Utilisation in Data Mapped to the
OMOP Common Data Model
Description: Summarise patient-level drug utilisation cohorts using data mapped
to the Observational Medical Outcomes Partnership (OMOP) common data model.
New users and prevalent users cohorts can be generated and their
characteristics, indication and drug use summarised.
Author: Marti Catala [aut, cre] ,
Mike Du [ctb] ,
Yuchen Guo [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Xintong Li [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between DrugUtilisation versions 1.1.0 dated 2026-01-28 and 1.2.0 dated 2026-06-18
DESCRIPTION | 13 MD5 | 267 NAMESPACE | 155 NEWS.md | 253 R/DrugUtilisation-package.R | 20 R/addDrugUtilisation.R | 2318 - R/addIntersect.R | 836 R/benchmarkDrugUtilisation.R | 502 R/cohortUtilities.R | 476 R/dailyDose.R | 558 R/data.R | 46 R/documentationHelpers.R | 450 R/erafyCohort.R | 210 R/generateAtcCohortSet.R | 158 R/generateDrugUtilisationCohortSet.R | 366 R/generateIngredientCohortSet.R | 344 R/mockDrugUtilisation.R | 1200 R/pattern.R | 348 R/plots.R | 1310 - R/reexports.R | 102 R/require.R | 706 R/summariseDiscontinuationAsSurvival.R |only R/summariseDrugRestart.R | 914 R/summariseDrugUtilisation.R | 458 R/summariseIntersect.R | 877 R/summariseProportionOfPatientsCovered.R | 648 R/tables.R | 956 R/validate.R | 152 README.md | 408 build/vignette.rds |binary inst/CITATION | 22 inst/Concept/asthma.json | 36 inst/acetaminophen.json | 24 inst/concepts/acetaminophen.json | 24 inst/concepts/influenza.json | 24 inst/doc/create_cohorts.R | 1082 inst/doc/create_cohorts.Rmd | 1690 - inst/doc/create_cohorts.html | 2396 - inst/doc/drug_utilisation.R | 336 inst/doc/drug_utilisation.Rmd | 602 inst/doc/drug_utilisation.html |16186 ++++++------- inst/pattern_assessment_for_dose_final.csv | 84 man/DrugUtilisation-package.Rd | 82 man/addCumulativeDose.Rd | 132 man/addCumulativeQuantity.Rd | 124 man/addDailyDose.Rd | 50 man/addDaysExposed.Rd | 132 man/addDaysPrescribed.Rd | 124 man/addDrugRestart.Rd | 118 man/addDrugUtilisation.Rd | 220 man/addIndication.Rd | 170 man/addInitialDailyDose.Rd | 132 man/addInitialExposureDuration.Rd | 124 man/addInitialQuantity.Rd | 124 man/addNumberEras.Rd | 132 man/addNumberExposures.Rd | 124 man/addTimeToExposure.Rd | 124 man/addTreatment.Rd | 144 man/benchmarkDrugUtilisation.Rd | 86 man/cdmDoc.Rd | 24 man/censorDateDoc.Rd | 26 man/cohortDoc.Rd | 24 man/cohortGapEra.Rd | 78 man/cohortIdDoc.Rd | 26 man/compNameDoc.Rd | 26 man/conceptSetDoc.Rd | 24 man/daysPrescribedDoc.Rd | 26 man/drugUtilisationDoc.Rd | 92 man/erafyCohort.Rd | 102 man/gapEraDoc.Rd | 26 man/generateAtcCohortSet.Rd | 138 man/generateDrugUtilisationCohortSet.Rd | 146 man/generateIngredientCohortSet.Rd | 154 man/indexDateDoc.Rd | 26 man/ingredientConceptIdDoc.Rd | 26 man/mockDrugUtilisation.Rd | 90 man/nameStyleDoc.Rd | 24 man/newNameDoc.Rd | 26 man/numberExposuresDoc.Rd | 26 man/patternTable.Rd | 56 man/patternsWithFormula.Rd | 38 man/plotDiscontinuationAsSurvival.Rd |only man/plotDoc.Rd | 58 man/plotDrugRestart.Rd | 130 man/plotDrugUtilisation.Rd | 182 man/plotIndication.Rd | 148 man/plotProportionOfPatientsCovered.Rd | 114 man/plotTreatment.Rd | 124 man/reexports.Rd | 56 man/requireDrugInDateRange.Rd | 102 man/requireIsFirstDrugEntry.Rd | 84 man/requireObservationBeforeDrug.Rd | 98 man/requirePriorDrugWashout.Rd | 104 man/restrictIncidentDoc.Rd | 28 man/resultDoc.Rd | 24 man/strataDoc.Rd | 26 man/summariseDiscontinuationAsSurvival.Rd |only man/summariseDoseCoverage.Rd | 90 man/summariseDrugRestart.Rd | 140 man/summariseDrugUtilisation.Rd | 228 man/summariseIndication.Rd | 178 man/summariseProportionOfPatientsCovered.Rd | 96 man/summariseTreatment.Rd | 130 man/tableDiscontinuationAsSurvival.Rd |only man/tableDoc.Rd | 90 man/tableDoseCoverage.Rd | 144 man/tableDrugRestart.Rd | 158 man/tableDrugUtilisation.Rd | 158 man/tableIndication.Rd | 156 man/tableProportionOfPatientsCovered.Rd | 154 man/tableTreatment.Rd | 154 tests/testthat.R | 24 tests/testthat/_snaps/addDrugUtilisation.md | 144 tests/testthat/setup.R | 140 tests/testthat/test-addDrugUtilisation.R | 942 tests/testthat/test-benchmarkDrugUtilisation.R | 56 tests/testthat/test-dailyDose.R | 564 tests/testthat/test-erafyCohort.R | 152 tests/testthat/test-generateDrugUtilisationCohortSet.R | 510 tests/testthat/test-generatedAtcCohortSet.R | 66 tests/testthat/test-indication.R | 1334 - tests/testthat/test-patterns.R | 130 tests/testthat/test-plotProportionOfPatientsCovered.R | 298 tests/testthat/test-plotTreatment.R | 178 tests/testthat/test-plots.R | 518 tests/testthat/test-require.R | 1270 - tests/testthat/test-summariseDiscontinuation.R |only tests/testthat/test-summariseDrugRestart.R | 624 tests/testthat/test-summariseDrugUtilisation.R | 296 tests/testthat/test-summariseProportionOfPatientsCovered.R | 1192 tests/testthat/test-summariseTreatment.R | 304 tests/testthat/test-tables.R | 946 vignettes/create_cohorts.Rmd | 1690 - vignettes/daily_dose_calculation.html |only vignettes/drug_restart.html |only vignettes/drug_utilisation.Rmd | 602 vignettes/indication.html |only vignettes/mock_data.html |only vignettes/summarise_treatments.html |only vignettes/treatment_discontinuation.html |only 140 files changed, 28298 insertions(+), 27759 deletions(-)
More information about DrugUtilisation at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-13 0.1.5
2020-09-23 0.1.2
2020-07-01 0.1.1
2020-04-24 0.1.0