Title: Native R 'torch' Implementation of 'OpenAI' 'Whisper'
Description: Speech-to-text transcription using a native R 'torch' implementation
of 'OpenAI' 'Whisper' model <https://github.com/openai/whisper>. Supports
multiple model sizes from tiny (39M parameters) to large-v3 (1.5B parameters)
with integrated download from 'HuggingFace' <https://huggingface.co/> via the
'hfhub' package. Provides automatic speech recognition with optional language
detection and translation to English. Audio preprocessing, mel spectrogram
computation, and transformer-based encoder-decoder inference are all
implemented in R using the 'torch' package.
Author: Troy Hernandez [aut, cre] ,
cornball.ai [cph],
OpenAI [cph] )
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between whisper versions 0.3.0 dated 2026-03-13 and 0.4.0 dated 2026-06-19
DESCRIPTION | 16 +- MD5 | 81 ++++++---- NAMESPACE | 2 NEWS.md | 51 ++++++ R/audio.R | 9 - R/config.R | 6 R/decode_jit.R |only R/devices.R | 152 +++++++++++++++++++ R/encoder.R | 9 - R/serve.R |only R/suppress.R |only R/tokenizer.R | 59 +++++-- R/transcribe.R | 299 +++++++++++++++++++++++++++------------ R/zzz.R | 9 + README.md | 62 +++++++- inst/tinytest/test_beam_search.R | 2 inst/tinytest/test_decode_jit.R |only inst/tinytest/test_language.R | 2 inst/tinytest/test_serve.R |only inst/tinytest/test_tokenizer.R | 12 + inst/whisper.service |only man/WHISPER_SAMPLE_RATE.Rd | 3 man/beam_search_decode.Rd | 2 man/compute_word_timestamps.Rd | 4 man/decode_with_fallback.Rd | 10 + man/detect_language.Rd | 4 man/dot-blank_token_ids.Rd |only man/dot-decode_suppress_ids.Rd |only man/dot-model_sizes.Rd |only man/dot-no_speech_prob.Rd |only man/dot-non_speech_token_ids.Rd |only man/dot-suppress_mask.Rd |only man/greedy_decode.Rd | 2 man/greedy_decode_jit.Rd |only man/pipeline_transcribe.Rd | 9 - man/sample_decode.Rd | 2 man/serve.Rd |only man/tokenizer_encode.Rd | 7 man/transcribe.Rd | 16 +- man/transcribe_chunk.Rd | 14 + man/transcribe_long.Rd | 7 man/whisper_attention.Rd | 3 man/whisper_decoder_layer.Rd | 4 man/whisper_device.Rd | 4 man/whisper_dtype.Rd | 5 man/whisper_model.Rd | 3 man/whisper_pipeline.Rd | 4 man/whisper_tokenizer.Rd | 4 man/whisper_tune_gc.Rd |only 49 files changed, 666 insertions(+), 212 deletions(-)
Title: Mediation Analysis Confidence Intervals
Description: Computes confidence intervals for nonlinear functions of model
parameters (e.g., product of k coefficients) in single-level and multilevel
structural equation
models. Methods include the distribution of the product,
Monte Carlo simulation, and bootstrap methods. It also performs the Model-Based
Constrained Optimization (MBCO) procedure for hypothesis testing of indirect
effects.
References:
Tofighi, D., and MacKinnon, D. P. (2011). RMediation: An R package for mediation
analysis confidence intervals. Behavior Research Methods, 43, 692-700.
<doi:10.3758/s13428-011-0076-x>;
Tofighi, D., and Kelley, K. (2020). Improved inference in mediation analysis: Introducing the model-based constrained optimization procedure.
Psychological Methods, 25(4), 496-515. <doi:10.1037/met0000259>;
Tofighi, D. (2020). Bootstrap Model-Based Constrained Optimization Tests of
Indirect Effects. Frontiers in Psychology, 10, 2989.
<doi:10.3389/fpsyg.2019.02989>.
Author: Davood Tofighi [aut, cre]
Maintainer: Davood Tofighi <dtofighi@gmail.com>
Diff between RMediation versions 1.3.0 dated 2025-11-20 and 1.5.0 dated 2026-06-19
RMediation-1.3.0/RMediation/data/memory_exp.RData |only RMediation-1.3.0/RMediation/man/figures/logo-light-large.png |only RMediation-1.3.0/RMediation/man/figures/logo-light-medium.png |only RMediation-1.3.0/RMediation/man/reexports.Rd |only RMediation-1.5.0/RMediation/DESCRIPTION | 23 RMediation-1.5.0/RMediation/MD5 | 120 +++- RMediation-1.5.0/RMediation/NAMESPACE | 24 RMediation-1.5.0/RMediation/NEWS.md | 172 ++++++ RMediation-1.5.0/RMediation/R/00_classes.R |only RMediation-1.5.0/RMediation/R/MBCOResult_methods.R |only RMediation-1.5.0/RMediation/R/ProductNormal_methods.R |only RMediation-1.5.0/RMediation/R/RMediation-package.R | 1 RMediation-1.5.0/RMediation/R/RMediation.R | 10 RMediation-1.5.0/RMediation/R/ci.R | 61 +- RMediation-1.5.0/RMediation/R/ci_medfit.R |only RMediation-1.5.0/RMediation/R/confintMC.R | 14 RMediation-1.5.0/RMediation/R/external_methods.R |only RMediation-1.5.0/RMediation/R/internal_s7_compute.R |only RMediation-1.5.0/RMediation/R/mbco.R | 117 +--- RMediation-1.5.0/RMediation/R/mbco_semi.R | 2 RMediation-1.5.0/RMediation/R/medci.R | 37 - RMediation-1.5.0/RMediation/R/medciMC.R | 2 RMediation-1.5.0/RMediation/R/medci_legacy_backup.R |only RMediation-1.5.0/RMediation/R/medci_prototype.R |only RMediation-1.5.0/RMediation/R/memory_exp.R | 6 RMediation-1.5.0/RMediation/R/pMC.R | 5 RMediation-1.5.0/RMediation/R/pprodnormal.R | 6 RMediation-1.5.0/RMediation/R/pprodnormalMC.R | 2 RMediation-1.5.0/RMediation/R/qMC.R | 5 RMediation-1.5.0/RMediation/R/qprodnormal.R | 6 RMediation-1.5.0/RMediation/R/qprodnormalMC.R | 2 RMediation-1.5.0/RMediation/R/tidy_logLik.R | 2 RMediation-1.5.0/RMediation/R/utils_stats.R |only RMediation-1.5.0/RMediation/R/utils_validation.R |only RMediation-1.5.0/RMediation/R/zzz.R |only RMediation-1.5.0/RMediation/README.md | 253 ++++++++-- RMediation-1.5.0/RMediation/build/partial.rdb |binary RMediation-1.5.0/RMediation/build/vignette.rds |only RMediation-1.5.0/RMediation/data/memory_exp.rda |only RMediation-1.5.0/RMediation/inst/doc |only RMediation-1.5.0/RMediation/man/MBCOResult.Rd |only RMediation-1.5.0/RMediation/man/ProductNormal.Rd |only RMediation-1.5.0/RMediation/man/ProductNormal2.Rd |only RMediation-1.5.0/RMediation/man/ProductNormal_from_lavaan.Rd |only RMediation-1.5.0/RMediation/man/cdf.Rd |only RMediation-1.5.0/RMediation/man/ci.Rd | 122 ---- RMediation-1.5.0/RMediation/man/ci_mediation_data.Rd |only RMediation-1.5.0/RMediation/man/dist_quantile.Rd |only RMediation-1.5.0/RMediation/man/dot-ci_core.Rd |only RMediation-1.5.0/RMediation/man/dot-compute_cdf_dop.Rd |only RMediation-1.5.0/RMediation/man/dot-compute_cdf_mc.Rd |only RMediation-1.5.0/RMediation/man/dot-compute_ci_asymp.Rd |only RMediation-1.5.0/RMediation/man/dot-compute_ci_dop.Rd |only RMediation-1.5.0/RMediation/man/dot-compute_ci_mc.Rd |only RMediation-1.5.0/RMediation/man/dot-compute_quantile_dop.Rd |only RMediation-1.5.0/RMediation/man/dot-compute_quantile_dop_internal.Rd |only RMediation-1.5.0/RMediation/man/dot-compute_quantile_mc.Rd |only RMediation-1.5.0/RMediation/man/dot-format_medci_result.Rd |only RMediation-1.5.0/RMediation/man/figures/logo.png |binary RMediation-1.5.0/RMediation/man/is_valid_for_computation.Rd |only RMediation-1.5.0/RMediation/man/mbco.Rd | 32 - RMediation-1.5.0/RMediation/man/medci.Rd | 74 ++ RMediation-1.5.0/RMediation/man/medci_prototype.Rd |only RMediation-1.5.0/RMediation/man/memory_exp.Rd | 6 RMediation-1.5.0/RMediation/man/pMC.Rd | 5 RMediation-1.5.0/RMediation/man/pprodnormal.Rd | 6 RMediation-1.5.0/RMediation/man/qMC.Rd | 5 RMediation-1.5.0/RMediation/man/qprodnormal.Rd | 6 RMediation-1.5.0/RMediation/man/tidy.Rd |only RMediation-1.5.0/RMediation/man/utils_validation.Rd |only RMediation-1.5.0/RMediation/man/validate_ProductNormal.Rd |only RMediation-1.5.0/RMediation/tests/testthat/test-ci-medfit-covariance.R |only RMediation-1.5.0/RMediation/tests/testthat/test-legacy-compat.R |only RMediation-1.5.0/RMediation/tests/testthat/test-mbco-legacy.R |only RMediation-1.5.0/RMediation/tests/testthat/test-s7-display.R |only RMediation-1.5.0/RMediation/tests/testthat/test-s7-integration.R |only RMediation-1.5.0/RMediation/tests/testthat/test-s7-mbco.R |only RMediation-1.5.0/RMediation/tests/testthat/test-s7-productnormal.R |only RMediation-1.5.0/RMediation/tests/testthat/test-s7-prototype.R |only RMediation-1.5.0/RMediation/tests/testthat/test-serial-medfit-integration.R |only RMediation-1.5.0/RMediation/vignettes |only 81 files changed, 710 insertions(+), 416 deletions(-)
Title: Automatic Linear and Logistic Regression and Survival Analysis
Description: Make summary tables for descriptive statistics and select explanatory variables
automatically in various regression models. Support linear models, generalized linear
models and cox-proportional hazard models. Generate publication-ready tables summarizing
result of regression analysis and plots. The tables and plots can be exported in "HTML",
"pdf('LaTex')", "docx('MS Word')" and "pptx('MS Powerpoint')" documents.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between autoReg versions 0.3.3 dated 2023-11-14 and 0.3.5 dated 2026-06-19
DESCRIPTION | 8 +-- MD5 | 44 ++++++++++----------- NAMESPACE | 1 NEWS | 14 ++++++ R/adjustedPlot.R | 8 ++- R/autoReg.R | 14 ++++-- R/df2flextable.R | 4 - R/fit2model.R | 6 +- R/modelPlot.R | 4 - R/residualPlot.R | 2 R/showEffect.R | 2 build/vignette.rds |binary inst/doc/Automatic_Regression_Modeling.R | 4 - inst/doc/Automatic_Regression_Modeling.html | 49 +++++++++++++++++------ inst/doc/Bootstrap_Prediction.html | 23 +++++++++-- inst/doc/Getting_started.R | 14 +++--- inst/doc/Getting_started.html | 58 +++++++++++++++++----------- inst/doc/Statiastical_test_in_gaze.html | 33 +++++++++++---- inst/doc/Survival.R | 4 - inst/doc/Survival.html | 49 ++++++++++++++++------- man/reexports.Rd | 2 man/residualPlot.Rd | 2 man/showEffect.Rd | 2 23 files changed, 232 insertions(+), 115 deletions(-)
Title: Synthetic Control Method with Spillover Effects
Description: A general-purpose implementation of synthetic control methods
that accounts for potential spillover effects between units. Based on
the methodology of Cao and Dowd (2019).
Author: Jianfei Cao [aut],
Zhanchao Fu [cre]
Maintainer: Zhanchao Fu <fuzhanchao2001@gmail.com>
Diff between scmSpillover versions 0.1.1 dated 2026-01-09 and 0.1.2 dated 2026-06-19
scmSpillover-0.1.1/scmSpillover/INDEX |only scmSpillover-0.1.1/scmSpillover/R/zzz.R |only scmSpillover-0.1.1/scmSpillover/inst/extdata/cigs.rda |only scmSpillover-0.1.1/scmSpillover/tests |only scmSpillover-0.1.2/scmSpillover/DESCRIPTION | 19 - scmSpillover-0.1.2/scmSpillover/LICENSE | 2 scmSpillover-0.1.2/scmSpillover/MD5 | 49 ++-- scmSpillover-0.1.2/scmSpillover/NAMESPACE | 2 scmSpillover-0.1.2/scmSpillover/NEWS.md | 63 ----- scmSpillover-0.1.2/scmSpillover/R/data.R |only scmSpillover-0.1.2/scmSpillover/R/data_generator.R | 79 +++---- scmSpillover-0.1.2/scmSpillover/R/method.R | 121 +++++------ scmSpillover-0.1.2/scmSpillover/R/plotting.R | 61 +---- scmSpillover-0.1.2/scmSpillover/R/scmSpillover-package.R |only scmSpillover-0.1.2/scmSpillover/R/scm_analysis.R | 9 scmSpillover-0.1.2/scmSpillover/R/scm_core.R | 42 ++- scmSpillover-0.1.2/scmSpillover/README.md | 30 -- scmSpillover-0.1.2/scmSpillover/data |only scmSpillover-0.1.2/scmSpillover/inst/extdata/cigs.xls |only scmSpillover-0.1.2/scmSpillover/man/california_cigarette.Rd |only scmSpillover-0.1.2/scmSpillover/man/generate_test_data.Rd | 14 - scmSpillover-0.1.2/scmSpillover/man/plot.scm_spillover.Rd | 11 - scmSpillover-0.1.2/scmSpillover/man/plot_all.Rd | 11 - scmSpillover-0.1.2/scmSpillover/man/plot_effects.Rd | 10 scmSpillover-0.1.2/scmSpillover/man/print.scm_spillover.Rd | 6 scmSpillover-0.1.2/scmSpillover/man/run_scm_spillover.Rd | 10 scmSpillover-0.1.2/scmSpillover/man/save_all_plots.Rd | 13 - scmSpillover-0.1.2/scmSpillover/man/scm.Rd | 10 scmSpillover-0.1.2/scmSpillover/man/scmSpillover-package.Rd |only scmSpillover-0.1.2/scmSpillover/man/summary.scm_spillover.Rd | 6 30 files changed, 242 insertions(+), 326 deletions(-)
Title: Run Any CLI Tool on a 'Conda' Environment
Description: Simplifies the execution of command line interface (CLI)
tools within isolated and reproducible environments. It enables users
to effortlessly manage 'Conda' environments, execute command line
tools, handle dependencies, and ensure reproducibility in their data
analysis workflows.
Author: Lucio Queiroz [aut, cre, cph] ,
Claudio Zanettini [aut, ctb]
Maintainer: Lucio Queiroz <luciorqueiroz@gmail.com>
Diff between condathis versions 0.1.3 dated 2025-11-08 and 0.1.4 dated 2026-06-19
DESCRIPTION | 21 MD5 | 164 +++--- NEWS.md | 49 ++ R/check_connection.R | 13 R/check_micromamba_version.R | 34 + R/clean_cache.R | 38 + R/conda_envvars.R |only R/create_base_env.R | 8 R/create_env.R | 166 +++--- R/define_platform.R | 50 +- R/download_micromamba_file.R |only R/env_exists.R | 15 R/format_channels_args.R | 14 R/get_best_micromamba_path.R | 95 +++ R/get_condathis_path.R | 16 R/get_env_dir.R | 12 R/get_install_dir.R | 23 R/get_micromamba_version.R | 13 R/get_sys_arch.R | 11 R/has_system_tar.R |only R/install_micromamba.R | 413 ++++++++++++----- R/install_packages.R | 55 +- R/is_micromamba_available.R | 30 - R/is_micromamba_version_available.R | 10 R/list_envs.R | 18 R/list_packages.R | 58 +- R/micromamba_bin_path.R | 20 R/micromamba_download_urls.R |only R/micromamba_user_installed.R | 11 R/native_cmd.R | 64 +- R/packages_search_native.R | 52 +- R/parse_match_spec.R |only R/parse_output.R | 28 - R/parse_quiet_flag.R | 9 R/parse_strategy_channel_priority.R |only R/parse_strategy_verbose.R | 28 - R/remove_env.R | 17 R/rethrow_error_cmd.R | 11 R/rethrow_error_run.R | 17 R/run.R | 112 +--- R/run_bin.R | 69 +- R/run_internal_native.R | 22 R/satisfies_dependencies.R |only R/symlink_micromamba_bin.R | 42 + R/version_spec_contains.R |only R/with_sandbox_dir.R | 31 - README.md | 4 build/vignette.rds |binary inst/doc/condathis.R | 8 inst/doc/condathis.html | 13 inst/doc/condathis.qmd | 30 - inst/extdata/polyglot.cmd |only man/clean_cache.Rd | 23 man/condathis-package.Rd | 3 man/create_env.Rd | 110 +--- man/env_exists.Rd | 36 - man/figures/logo.svg |only man/get_env_dir.Rd | 13 man/get_install_dir.Rd | 20 man/get_sys_arch.Rd | 11 man/install_micromamba.Rd | 47 - man/install_packages.Rd | 63 +- man/list_envs.Rd | 18 man/list_packages.Rd | 59 -- man/micromamba_bin_path.Rd | 18 man/parse_output.Rd | 20 man/remove_env.Rd | 38 - man/run.Rd | 110 +--- man/run_bin.Rd | 92 +-- man/with_sandbox_dir.Rd | 28 - tests/testthat/libmamba_wrappers.R |only tests/testthat/test-check_micromamba_version.R |only tests/testthat/test-clean_cache.R | 54 +- tests/testthat/test-conda_envvars.R |only tests/testthat/test-create_env.R | 77 +-- tests/testthat/test-create_nested_env.R | 14 tests/testthat/test-format_channels_args.R | 4 tests/testthat/test-get_best_micromamba_path.R |only tests/testthat/test-get_install_dir.R | 16 tests/testthat/test-get_sys_arch.R | 12 tests/testthat/test-install_micromamba.R | 199 ++++++-- tests/testthat/test-is_micromamba_available_for_arch.R | 56 +- tests/testthat/test-list_packages.R | 13 tests/testthat/test-parse_match_spec.R |only tests/testthat/test-parse_strategy_channel_priority.R |only tests/testthat/test-rethrow_error.R | 5 tests/testthat/test-run.R | 14 tests/testthat/test-run_output_file.R | 7 tests/testthat/test-run_verbose_levels.R | 4 tests/testthat/test-satisfy_dependencies.R |only tests/testthat/test-version_spec_contains.R |only vignettes/condathis.qmd | 30 - 92 files changed, 1819 insertions(+), 1309 deletions(-)
Title: NASA 'EarthData' Access Utilities
Description: Providing easy, portable access to NASA 'EarthData' products
through the use of bearer tokens. Much of NASA's public data catalogs hosted
and maintained by its 12 Distributed Active Archive Centers ('DAACs') are
now made available on the Amazon Web Services 'S3' storage. However,
accessing this data through the standard 'S3' API is restricted to only to
compute resources running inside 'us-west-2' Data Center in Portland, Oregon,
which allows NASA to avoid being charged data egress rates. This package
provides public access to the data from any networked device by using the
'EarthData' login application programming interface (API),
<https://www.earthdata.nasa.gov/data/earthdata-login>,
providing convenient authentication and access to cloud-hosted NASA 'EarthData'
products. This makes access to a wide range of earth observation data from
any location straight forward and compatible with R packages that are
widely used with cloud native earth observation data (such as 'terra',
's [...truncated...]
Author: Carl Boettiger [aut, cre, cph] ,
Luis Lopez [aut] ,
Yuvi Panda [aut],
Bri Lind [aut] ,
Andy Teucher [ctb] ,
Openscapes [fnd]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between earthdatalogin versions 0.0.4 dated 2026-06-12 and 0.0.5 dated 2026-06-19
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 16 ++++++++++++++++ R/edl_download.R | 16 +++++++++++----- R/edl_netrc.R | 31 ++++++++++++++++++++++++------- R/edl_search.R | 22 +++++++++++++++------- R/stac-collections_fetch.R | 22 +++++++++++++++------- man/collections_fetch.Rd | 4 ++++ tests/testthat/test-edl_netrc.R | 34 ++++++++++++++++++++++++++++++++++ tests/testthat/test-edl_search.R | 22 ++++++++++++++++++++++ 10 files changed, 153 insertions(+), 38 deletions(-)
More information about earthdatalogin at CRAN
Permanent link
Title: 'R' Grammar for 'Tree-Sitter'
Description: Provides bindings to an 'R' grammar for 'Tree-sitter', to be
used alongside the 'treesitter' package. 'Tree-sitter' builds concrete
syntax trees for source files of any language, and can efficiently
update those syntax trees as the source file is edited.
Author: Davis Vaughan [aut, cre],
Posit Software, PBC [cph, fnd],
Tree-sitter authors [cph]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between treesitter.r versions 1.2.0 dated 2025-06-05 and 1.3.0 dated 2026-06-19
DESCRIPTION | 8 MD5 | 35 NEWS.md | 6 src/parser.c |150253 ++++++++++++++++----------------- src/scanner.c | 647 tests/testthat/_snaps/calls.md | 47 tests/testthat/_snaps/control-flow.md | 8 tests/testthat/_snaps/extract.md | 8 tests/testthat/_snaps/functions.md | 325 tests/testthat/_snaps/literals.md | 376 tests/testthat/_snaps/miscellaneous.md | 8 tests/testthat/_snaps/strings.md | 498 tests/testthat/_snaps/unclosed.md | 8 tests/testthat/references/calls.R | 6 tests/testthat/references/functions.R | 8 tests/testthat/references/literals.R | 52 tests/testthat/references/strings.R | 21 tests/testthat/test-comments.R |only tests/testthat/test-stack-crash.R | 6 19 files changed, 77552 insertions(+), 74768 deletions(-)
Title: 'OpenAI' Compatible Speech-to-Text API Client
Description: A minimal-dependency R client for 'OpenAI'-compatible speech-to-text
APIs (see <https://platform.openai.com/docs/api-reference/audio>) with
optional local fallbacks. Supports 'OpenAI', local servers, and the
'whisper' package for local transcription.
Author: Troy Hernandez [aut, cre] ,
Cornball AI [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between stt.api versions 0.2.1 dated 2026-04-01 and 0.3.0 dated 2026-06-19
DESCRIPTION | 6 +- MD5 | 16 +++---- NEWS.md | 18 ++++++++ R/internal_api.R | 30 +++++++++++++ R/internal_backend.R | 91 ++++++++++++++++++++++++++---------------- R/stt.R | 63 +++++++++++++++++++++++------ README.md | 37 ++++++++++++++--- inst/tinytest/test_internal.R | 28 ++++++++++++ man/stt.Rd | 37 +++++++++++++---- 9 files changed, 255 insertions(+), 71 deletions(-)
Title: Create and Install Custom 'RStudio' Themes
Description: Create, convert and install custom 'RStudio' editor themes
from 'Visual Studio Code', 'Positron' and 'TextMate' theme files.
Convert themes between 'TextMate', 'Visual Studio Code' and 'Positron'
formats and install bundled ports of popular themes for use in
'RStudio'.
Author: Diego Hernangomez [aut, cre, cph] ,
Garrick Aden-Buie [cph] function)
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between rstudiothemes versions 1.1.1 dated 2026-05-11 and 1.1.2 dated 2026-06-19
DESCRIPTION | 18 LICENSE | 4 MD5 | 101 +- NEWS.md | 52 - R/convert-tm-to-vs.R | 334 +++---- R/convert-to-rs.R | 144 +-- R/convert-vs-to-tm.R | 244 ++--- R/generate-uuid.R | 45 R/on-rstudio.R | 16 R/read-tm-theme.R | 101 -- R/read-vs-theme.R | 114 +- R/rstudiothemes-actions.R | 174 +-- R/utils.R | 81 + README.md | 120 +- inst/CITATION | 48 - inst/WORDLIST | 2 inst/doc/rstudiothemes.R | 6 inst/doc/rstudiothemes.html | 50 - inst/doc/rstudiothemes.qmd | 60 - inst/ext/Skeletor_Syntax.tmTheme | 1064 +++++++++++------------ inst/ext/skeletor-syntax-color-theme.json | 1126 ++++++++++++------------- inst/ext/test-hc-dark.tmTheme |only inst/ext/test-hc-light.tmTheme |only inst/ext/test-simple-color-theme.json | 2 inst/ext/test.tmTheme | 1002 +++++++++++----------- inst/rsthemes/VSCode_Dark.rstheme | 2 inst/rsthemes/VSCode_Light.rstheme | 2 inst/schemaorg.json | 8 man/chunks/themes.Rmd | 30 man/convert_tm_to_vs_theme.Rd | 121 +- man/convert_to_rstudio_theme.Rd | 213 ++-- man/convert_vs_to_tm_theme.Rd | 124 +- man/generate_uuid.Rd | 103 +- man/on_rstudio.Rd | 48 - man/read_tm_theme.Rd | 76 - man/read_vs_theme.Rd | 72 - man/roxygen |only man/rstudiothemes-actions.Rd | 229 ++--- man/rstudiothemes-package.Rd | 72 - tests/testthat/_snaps/convert-tm-to-vs.md | 23 tests/testthat/_snaps/convert-vs-to-tm.md | 14 tests/testthat/_snaps/on-rstudio.md | 6 tests/testthat/_snaps/read-tm-theme.md | 12 tests/testthat/_snaps/read-vs-theme.md | 10 tests/testthat/_snaps/rstudiothemes-actions.md | 27 tests/testthat/_snaps/utils.md | 2 tests/testthat/test-convert-tm-to-vs.R | 49 + tests/testthat/test-convert-vs-to-tm.R | 35 tests/testthat/test-read-tm-theme.R | 43 tests/testthat/test-read-vs-theme.R | 20 tests/testthat/test-rstudiothemes-actions.R | 42 tests/testthat/test-utils.R | 66 + vignettes/rstudiothemes.qmd | 60 - 53 files changed, 3329 insertions(+), 3088 deletions(-)
Title: Integrative Chromatin Accessibility and RNA Framework for Gene
Regulatory Networks
Description: Provides a reproducible framework for constructing and comparing
gene regulatory networks by integrating chromatin accessibility footprint
scores with matched RNA expression data. It implements context-specific
enhancer-gene linking, transcription factor focused network analysis,
differential network analysis, and regulatory topic modeling workflows for
systematic exploration of gene regulation across conditions. Methodological
background is described in Bentsen and others (2020)
<doi:10.1038/s41467-020-18035-1>, Blei, Ng and Jordan (2003)
<https://www.jmlr.org/papers/v3/blei03a.html>, and Chen, Li, Zhu and Chen
(2015) <doi:10.48550/arXiv.1510.08628>.
Author: Yaoxiang Li [aut, cre],
Chunling Yi [aut]
Maintainer: Yaoxiang Li <liyaoxiang@outlook.com>
Diff between craftgrn versions 0.1.6 dated 2026-06-18 and 0.1.7 dated 2026-06-19
DESCRIPTION | 13 +- MD5 | 18 +-- NEWS.md | 7 + R/utils_step3_topic_benchmark.R | 135 ++++++++++++++++++++++++-- R/utils_step3_topic_models.R | 95 ++++++++++++++++-- inst/WORDLIST | 3 man/run_topic_modeling.Rd | 8 + tests/testthat/test-config.R | 9 - tests/testthat/test-module3-topic-benchmark.R | 67 ++++++++++++ tests/testthat/test-module3-topic-models.R | 115 ++++++++++++++++++++++ 10 files changed, 434 insertions(+), 36 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package
supports the static site generator 'Hugo' (<https://gohugo.io>) best,
and it also supports 'Jekyll' (<https://jekyllrb.com>) and 'Hexo'
(<https://hexo.io>).
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [aut] ,
Alison Presmanes Hill [aut] ,
Amber Thomas [ctb],
Beilei Bian [ctb],
Brandon Greenwell [ctb],
Brian Barkley [ctb],
Deependra Dhakal [ctb],
Eric Nantz [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb] [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 1.23 dated 2026-01-17 and 1.24 dated 2026-06-19
blogdown-1.23/blogdown/tests/test-ci.R |only blogdown-1.23/blogdown/tests/test-cran.R |only blogdown-1.24/blogdown/DESCRIPTION | 8 ++--- blogdown-1.24/blogdown/MD5 | 31 ++++++++++----------- blogdown-1.24/blogdown/R/format.R | 4 +- blogdown-1.24/blogdown/R/hugo.R | 12 +++----- blogdown-1.24/blogdown/R/install.R | 4 +- blogdown-1.24/blogdown/R/package.R | 6 +--- blogdown-1.24/blogdown/R/render.R | 2 - blogdown-1.24/blogdown/R/utils.R | 9 ++++++ blogdown-1.24/blogdown/inst/CITATION | 2 - blogdown-1.24/blogdown/inst/resources/Rprofile | 2 - blogdown-1.24/blogdown/man/blogdown.Rd | 2 - blogdown-1.24/blogdown/man/build_site.Rd | 2 - blogdown-1.24/blogdown/man/html_page.Rd | 4 +- blogdown-1.24/blogdown/man/install_hugo.Rd | 2 - blogdown-1.24/blogdown/tests/test-all.R |only blogdown-1.24/blogdown/tests/test-ci/test-themes.R | 1 18 files changed, 47 insertions(+), 44 deletions(-)
Title: Data Thinning of Species Occurrences in Environmental Space
Description: A suite of tools to mitigate sampling bias in species occurrence
records by thinning data in the environmental space (E-space). This process
can improve the accuracy and precision of species distribution models (SDM,
also known as ecological niche models, ENM). The package offers a
data-driven protocol to determine thinning parameters using kernel-density
bandwidth selection. Two thinning methods are provided (stochastic and
deterministic) to reduce over-sampled environmental conditions and down-weight
outlier observations. The name 'bean' reflects the core principle of the
method: each 'pod' (a grid cell in E-space) is allowed to contain only a
limited number of 'beans' (occurrence points). See Silverman (1986,
ISBN:978-0-412-24620-3) and Rousseeuw and Leroy (2003,
ISBN:978-0-471-48855-2) for the underlying statistical methods.
Author: Paanwaris Paansri [cre, aut] ,
Luis E. Escobar [aut, ctb]
Maintainer: Paanwaris Paansri <paanwaris@vt.edu>
Diff between bean versions 0.2.1 dated 2026-06-08 and 0.2.2 dated 2026-06-19
DESCRIPTION | 9 +- MD5 | 36 +++++----- NEWS.md | 16 ++++ R/fit_ellipsoid.R | 7 - README.md | 16 ++-- inst/doc/bean-overview.R | 4 - inst/doc/bean-overview.Rmd | 4 - inst/doc/data-preparation.R | 4 - inst/doc/data-preparation.Rmd | 4 - inst/doc/environmental-thinning.R | 4 - inst/doc/environmental-thinning.Rmd | 4 - inst/doc/niche-modeling.R | 101 ++++++++++++++++++---------- inst/doc/niche-modeling.Rmd | 113 ++++++++++++++++++++++---------- inst/doc/niche-modeling.html | 123 +++++++++++++++++++++++++---------- man/fit_ellipsoid.Rd | 7 - vignettes/bean-overview.Rmd | 4 - vignettes/data-preparation.Rmd | 4 - vignettes/environmental-thinning.Rmd | 4 - vignettes/niche-modeling.Rmd | 113 ++++++++++++++++++++++---------- 19 files changed, 384 insertions(+), 193 deletions(-)
Title: Meta Clustering with Similarity Network Fusion
Description: Framework to facilitate patient subtyping with similarity network fusion and meta clustering. The similarity network fusion (SNF) algorithm was introduced by Wang et al. (2014) in <doi:10.1038/nmeth.2810>. SNF is a data integration approach that can transform high-dimensional and diverse data types into a single similarity network suitable for clustering with minimal loss of information from each initial data source. The meta clustering approach was introduced by Caruana et al. (2006) in <doi:10.1109/ICDM.2006.103>. Meta clustering involves generating a wide range of cluster solutions by adjusting clustering hyperparameters, then clustering the solutions themselves into a manageable number of qualitatively similar solutions, and finally characterizing representative solutions to find ones that are best for the user's specific context. This package provides a framework to easily transform multi-modal data into a wide range of similarity network fusion-derived cluster solutio [...truncated...]
Author: Prashanth S Velayudhan [aut, cre],
Xiaoqiao Xu [aut],
Prajkta Kallurkar [aut],
Ana Patricia Balbon [aut],
Maria T Secara [aut],
Adam Taback [aut],
Denise Sabac [aut],
Nicholas Chan [aut],
Shihao Ma [aut],
Bo Wang [aut],
Daniel Felsky [aut],
Stephanie [...truncated...]
Maintainer: Prashanth S Velayudhan <psvelayu@gmail.com>
Diff between metasnf versions 2.1.2 dated 2025-04-28 and 2.3.0 dated 2026-06-19
DESCRIPTION | 10 MD5 | 79 +++---- NEWS.md | 18 + R/dist_fns_list.R | 5 R/feature_plots.R | 3 R/quality_measures.R | 346 +++++++++++++++++++++----------- R/settings_df.R | 17 - R/snf_config.R | 15 + README.md | 5 build/partial.rdb |binary build/vignette.rds |binary inst/doc/a_complete_example.Rmd | 13 - inst/doc/a_complete_example.html | 24 -- inst/doc/a_simple_example.html | 4 inst/doc/alluvial_plots.html | 8 inst/doc/clustering_algorithms.html | 8 inst/doc/confounders.html | 16 - inst/doc/correlation_plots.html | 4 inst/doc/data_list.html | 4 inst/doc/distance_metrics.html | 6 inst/doc/feature_plots.html | 12 - inst/doc/feature_weights.html | 4 inst/doc/getting_started.html | 4 inst/doc/imputations.html | 4 inst/doc/manhattan_plots.html | 4 inst/doc/nmi_scores.html | 4 inst/doc/parallel_processing.html | 4 inst/doc/quality_measures.Rmd | 4 inst/doc/quality_measures.html | 8 inst/doc/similarity_matrix_heatmap.html | 4 inst/doc/snf_config.html | 8 inst/doc/stability_measures.html | 4 man/add_settings_df_rows.Rd | 7 man/db_manual.Rd |only man/dist_fns_list.Rd | 5 man/dunn_manual.Rd |only man/quality_measures.Rd | 19 - man/settings_df.Rd | 7 man/sim_to_dist.Rd |only man/snf_config.Rd | 7 vignettes/a_complete_example.Rmd | 13 - vignettes/quality_measures.Rmd | 4 42 files changed, 416 insertions(+), 295 deletions(-)
Title: Cross-Design & Cross-Format Network Meta-Analysis and Regression
Description: Network meta-analysis and meta-regression (allows
including up to three covariates) for individual participant data,
aggregate data, and mixtures of both formats using the three-level
hierarchical model. Each format can come from randomized controlled
trials or non-randomized studies or mixtures of both. Estimates are
generated in a Bayesian framework using JAGS. The implemented models
are described by Hamza et al. 2023 <DOI:10.1002/jrsm.1619>.
Author: Tasnim Hamza [aut] ,
Guido Schwarzer [aut, cre] ,
Georgia Salanti [aut]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between crossnma versions 1.3.0 dated 2024-11-28 and 1.3.1 dated 2026-06-19
DESCRIPTION | 21 +++++++++++---------- MD5 | 28 ++++++++++++++-------------- NEWS.md | 12 ++++++++++++ R/crossnma-package.R | 16 +++++----------- R/crossnma.R | 4 ++-- R/crossnma.code.R | 2 +- R/crossnma.model.R | 15 ++++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 +- inst/doc/crossnma.Rmd | 2 +- inst/doc/crossnma.pdf |binary man/crossnma-package.Rd | 4 ++-- vignettes/crossnma.Rmd | 2 +- vignettes/references.bib | 8 +++++--- 15 files changed, 63 insertions(+), 53 deletions(-)
Title: High-Performance Wavelet Lifting Transforms
Description: Performs Wavelet Lifting Transforms focusing on signal denoising
and functional data analysis (FDA). Implements a hybrid architecture with
a zero-allocation 'C++' core for high-performance processing. Features include
unified offline (batch) denoising, causal (real-time) filtering using a
ring buffer engine, and adaptive recursive thresholding.
Author: Moises da Silva [aut, cre]
Maintainer: Moises da Silva <moisesdff8@gmail.com>
Diff between rLifting versions 0.9.0 dated 2026-02-20 and 1.0.0 dated 2026-06-19
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Title: Bayesian Distributed Lag Non-Linear Models (B-DLNM)
Description: A Bayesian framework for estimating distributed lag linear and non-linear models. Model fitting is implemented using Integrated Nested Laplace Approximation (R package 'INLA'), together with prediction and visualization of exposure-lag-response associations. Additional functions allow estimation of optimal exposure values (e.g., minimum mortality temperature) and computation of attributable fractions and numbers. Models with 'crossbasis' or 'onebasis' terms are supported (R package 'dlnm').
Author: Pau Satorra [aut, cre] ,
Marcos Quijal-Zamorano [aut],
Joan Ballester [aut],
Cristian Tebe [ctb],
Miguel A. Martinez-Beneito [aut, ths],
Marc Mari-Dell'Olmo [aut, ths]
Maintainer: Pau Satorra <psatorra@igtp.cat>
Diff between bdlnm versions 0.1.0 dated 2026-03-18 and 0.1.1 dated 2026-06-19
DESCRIPTION | 10 MD5 | 49 - NEWS.md | 8 R/attributable.R | 1246 +++++++++++++++++++-------------------- R/bcrosspred.R | 1116 +++++++++++++++++----------------- R/bdlnm.R | 705 +++++++++++----------- R/optimal_exposure.R | 518 ++++++++-------- R/plot.bcrosspred.R | 1098 +++++++++++++++++----------------- R/plot.optimal_exposure.R | 282 ++++---- R/utils.R | 476 +++++++------- README.md | 6 build/vignette.rds |binary inst/doc/bdlnm.R | 112 ++- inst/doc/bdlnm.Rmd | 112 ++- inst/doc/bdlnm.html | 421 +++++++------ man/attributable.Rd | 8 man/bcrosspred.Rd | 4 man/bdlnm.Rd | 20 man/figures |only man/optimal_exposure.Rd | 4 man/plot.bcrosspred.Rd | 4 man/plot.optimal_exposure.Rd | 4 tests/testthat/helper.R | 2 tests/testthat/test-bcrosspred.R | 59 + tests/testthat/test-bdlnm.R | 2 vignettes/bdlnm.Rmd | 112 ++- 26 files changed, 3363 insertions(+), 3015 deletions(-)
Title: Mapping the Prevalence of Binary Indicators using Survey Data in
Small Areas
Description: Provides a pipeline to perform small area estimation and prevalence mapping of binary indicators using health and demographic survey data, described in Dong et al. (2026) <doi:10.1093/jssam/smaf048>, Wakefield et al. (2025) <doi:10.48550/arXiv.2110.09576> and Wakefield et al. (2020) <doi:10.1111/insr.12400>.
Author: Qianyu Dong [cre, aut],
Zehang R Li [aut],
Yunhan Wu [aut],
Jieyi Xu [aut],
Andrea Boskovic [aut],
Jon Wakefield [aut]
Maintainer: Qianyu Dong <qdong14@ucsc.edu>
Diff between surveyPrev versions 1.0.0 dated 2024-04-10 and 2.0.0 dated 2026-06-19
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Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut],
Milan Bouchet-Valat [aut],
Manuel Munoz-Marquez [aut, cre],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Vilmantas Gegzna [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ct [...truncated...]
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between Rcmdr versions 2.12.3 dated 2026-05-03 and 2.13.0 dated 2026-06-19
DESCRIPTION | 11 MD5 | 45 - NAMESPACE | 1 NEWS | 9 R/Rcmdr-package.R | 4 R/cluster.R | 2 R/commander.R | 11 R/data-menu.R | 28 - R/utilities.R | 10 inst/doc/Commander-ru.pdf |binary inst/doc/Empezando-con-Rcmdr-es.pdf |binary inst/doc/Getting-Started-with-the-Rcmdr-ja.pdf |binary inst/doc/Getting-Started-with-the-Rcmdr-ko.pdf |binary inst/doc/Getting-Started-with-the-Rcmdr.pdf |binary inst/po/pl/LC_MESSAGES/R-Rcmdr.mo |binary inst/po/sl/LC_MESSAGES/R-Rcmdr.mo |binary man/Compute.Rd | 3 man/Rcmdr-package.Rd | 4 man/RecodeDialog.Rd | 2 man/dropUnusedFactorLevels.Rd |only po/R-Rcmdr.pot | 2 po/R-es.po | 2 po/R-pl.po | 689 ++++++++++++++++++++++--- po/R-sl.po | 315 ++++------- 24 files changed, 823 insertions(+), 315 deletions(-)
Title: 'caret' Applications for Spatial-Temporal Models
Description: Supporting functionality to run 'caret' with spatial or spatial-temporal data.
'caret' is a frequently used package for model training and prediction using machine learning.
CAST includes functions to improve spatial or spatial-temporal modelling tasks using 'caret'.
It includes the newly suggested 'Nearest neighbor distance matching' cross-validation to estimate
the performance of spatial prediction models and allows for spatial variable selection to selects
suitable predictor variables in view to their contribution to the spatial model performance.
CAST further includes functionality to estimate the (spatial) area of applicability of prediction models.
Methods are described in
Meyer et al. (2018) <doi:10.1016/j.envsoft.2017.12.001>;
Meyer et al. (2019) <doi:10.1016/j.ecolmodel.2019.108815>;
Meyer and Pebesma (2021) <doi:10.1111/2041-210X.13650>;
Milà et al. (2022) <doi:10.1111/2041-210X.13851>;
Meyer and Pebesma (2022) <doi:10.1038/s41467-022-29838-9>;
L [...truncated...]
Author: Hanna Meyer [cre, aut],
Carles Mila [aut],
Marvin Ludwig [aut],
Jan Linnenbrink [aut],
Fabian Schumacher [aut],
Philipp Otto [ctb],
Chris Reudenbach [ctb],
Thomas Nauss [ctb],
Edzer Pebesma [ctb],
Jakub Nowosad [ctb],
Darius Goergen [ctb]
Maintainer: Hanna Meyer <hanna.meyer@uni-muenster.de>
Diff between CAST versions 1.0.4 dated 2026-01-26 and 1.1.0 dated 2026-06-19
CAST-1.0.4/CAST/man/print.Rd |only CAST-1.0.4/CAST/tests/testthat/test_trainDI.R |only CAST-1.1.0/CAST/DESCRIPTION | 63 - CAST-1.1.0/CAST/MD5 | 108 +- CAST-1.1.0/CAST/NAMESPACE | 6 CAST-1.1.0/CAST/NEWS.md | 19 CAST-1.1.0/CAST/R/CreateSpacetimeFolds.R | 13 CAST-1.1.0/CAST/R/aoa.R | 222 +--- CAST-1.1.0/CAST/R/errorProfiles.R | 19 CAST-1.1.0/CAST/R/ffs.R | 474 +++++---- CAST-1.1.0/CAST/R/geodist.R | 953 +++++++++----------- CAST-1.1.0/CAST/R/knndm.R | 582 ++++++++---- CAST-1.1.0/CAST/R/nndm.R | 2 CAST-1.1.0/CAST/R/plot.R | 832 ++++++++++------- CAST-1.1.0/CAST/R/print.R | 80 - CAST-1.1.0/CAST/R/trainDI.R | 67 - CAST-1.1.0/CAST/README.md | 23 CAST-1.1.0/CAST/inst/doc/cast01-CAST-intro.R | 44 CAST-1.1.0/CAST/inst/doc/cast01-CAST-intro.Rmd | 80 - CAST-1.1.0/CAST/inst/doc/cast01-CAST-intro.html | 246 ++--- CAST-1.1.0/CAST/inst/doc/cast02-plotgeodist.R | 52 - CAST-1.1.0/CAST/inst/doc/cast02-plotgeodist.Rmd | 71 - CAST-1.1.0/CAST/inst/doc/cast02-plotgeodist.html | 146 +-- CAST-1.1.0/CAST/inst/doc/cast03-CV.R | 4 CAST-1.1.0/CAST/inst/doc/cast03-CV.Rmd | 17 CAST-1.1.0/CAST/inst/doc/cast03-CV.html | 66 - CAST-1.1.0/CAST/inst/doc/cast04-AOA-tutorial.R | 36 CAST-1.1.0/CAST/inst/doc/cast04-AOA-tutorial.Rmd | 58 - CAST-1.1.0/CAST/inst/doc/cast04-AOA-tutorial.html | 146 +-- CAST-1.1.0/CAST/inst/doc/cast05-parallel.Rmd | 4 CAST-1.1.0/CAST/inst/doc/cast05-parallel.html | 21 CAST-1.1.0/CAST/man/CreateSpacetimeFolds.Rd | 1 CAST-1.1.0/CAST/man/aoa.Rd | 20 CAST-1.1.0/CAST/man/errorProfiles.Rd | 2 CAST-1.1.0/CAST/man/ffs.Rd | 26 CAST-1.1.0/CAST/man/figures/CAST_workflow.png |binary CAST-1.1.0/CAST/man/geodist.Rd | 82 + CAST-1.1.0/CAST/man/knndm.Rd | 104 +- CAST-1.1.0/CAST/man/nndm.Rd | 2 CAST-1.1.0/CAST/man/plot.Rd | 6 CAST-1.1.0/CAST/man/print.aoa.Rd |only CAST-1.1.0/CAST/man/print.ffs.Rd |only CAST-1.1.0/CAST/man/print.knndm.Rd |only CAST-1.1.0/CAST/man/print.nndm.Rd |only CAST-1.1.0/CAST/man/print.trainDI.Rd |only CAST-1.1.0/CAST/man/trainDI.Rd | 2 CAST-1.1.0/CAST/tests/testthat/test-aoa.R | 36 CAST-1.1.0/CAST/tests/testthat/test-bss.R |only CAST-1.1.0/CAST/tests/testthat/test-errorProfiles.R | 74 + CAST-1.1.0/CAST/tests/testthat/test-fss.R | 82 + CAST-1.1.0/CAST/tests/testthat/test-geodist.R | 157 ++- CAST-1.1.0/CAST/tests/testthat/test-knndm.R | 83 + CAST-1.1.0/CAST/tests/testthat/test-nndm.R | 33 CAST-1.1.0/CAST/tests/testthat/test-normalize_DI.R |only CAST-1.1.0/CAST/tests/testthat/test-trainDI.R |only CAST-1.1.0/CAST/vignettes/cast01-CAST-intro.Rmd | 80 - CAST-1.1.0/CAST/vignettes/cast02-plotgeodist.Rmd | 71 - CAST-1.1.0/CAST/vignettes/cast03-CV.Rmd | 17 CAST-1.1.0/CAST/vignettes/cast04-AOA-tutorial.Rmd | 58 - CAST-1.1.0/CAST/vignettes/cast05-parallel.Rmd | 4 60 files changed, 3176 insertions(+), 2218 deletions(-)
Title: Zebra-Striped Tables in LaTeX and HTML Formats
Description: Makes zebra-striped tables (tables with alternating row colors)
in LaTeX and HTML formats easily from a data.frame, matrix, lm, aov, anova,
glm, coxph, nls, fitdistr, mytable and cbind.mytable objects.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between ztable versions 0.2.3 dated 2021-09-28 and 0.2.5 dated 2026-06-19
DESCRIPTION | 8 MD5 | 40 NAMESPACE | 2 NEWS | 142 +- R/parallelTables.R | 10 R/ztable.R | 4 R/ztable.cbind.mytable.R | 7 R/ztable2flextable.R | 4 R/zzz.R | 2 build/vignette.rds |binary inst/doc/heatmapTable.R | 6 inst/doc/heatmapTable.html | 624 +++++++---- inst/doc/ztable.R | 4 inst/doc/ztable.html | 2390 +++++++++++++++++++++----------------------- inst/doc/ztable_update.R | 14 inst/doc/ztable_update.Rmd | 2 inst/doc/ztable_update.html | 994 +++++++++--------- man/update_ztable.Rd | 2 man/ztable.Rd | 28 man/ztable_sub.Rd | 2 vignettes/ztable_update.Rmd | 2 21 files changed, 2242 insertions(+), 2045 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/> to get started.
Author: Robert J. Hijmans [cre, aut] ,
Andrew Brown [aut] ,
Marcia Barbosa [aut] ,
Krzysztof Dyba [ctb] ,
Roger Bivand [ctb] ,
Michael Chirico [ctb] ,
Emanuele Cordano [ctb] ,
Edzer Pebesma [ctb] ,
Barry Rowlingson [ctb] ,
Michael D. Sumner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.9-27 dated 2026-05-10 and 1.9-34 dated 2026-06-19
terra-1.9-27/terra/src/spatGraph.h |only terra-1.9-34/terra/DESCRIPTION | 12 terra-1.9-34/terra/MD5 | 157 +-- terra-1.9-34/terra/NAMESPACE | 6 terra-1.9-34/terra/NEWS.md | 46 - terra-1.9-34/terra/R/Aclasses.R | 24 terra-1.9-34/terra/R/Agenerics.R | 10 terra-1.9-34/terra/R/RcppExports.R | 4 terra-1.9-34/terra/R/SpatNetwork.R |only terra-1.9-34/terra/R/SpatRasterDataset.R | 15 terra-1.9-34/terra/R/colors.R | 65 + terra-1.9-34/terra/R/generics.R | 2 terra-1.9-34/terra/R/geom.R | 3 terra-1.9-34/terra/R/kml.R | 105 ++ terra-1.9-34/terra/R/messages.R | 10 terra-1.9-34/terra/R/plotRGB.R | 5 terra-1.9-34/terra/R/plot_axes.R | 35 terra-1.9-34/terra/R/plot_raster.R | 3 terra-1.9-34/terra/R/rasterize.R | 744 ++++++++--------- terra-1.9-34/terra/R/regress.R | 97 ++ terra-1.9-34/terra/R/sample.R | 27 terra-1.9-34/terra/R/show.R | 4 terra-1.9-34/terra/R/vect.R | 17 terra-1.9-34/terra/inst/ex/lux_highways.rds |only terra-1.9-34/terra/inst/ex/sent2_L2A_2024-08-24.tif |only terra-1.9-34/terra/inst/tinytest/test_network.R |only terra-1.9-34/terra/inst/tinytest/test_network_gnm.R |only terra-1.9-34/terra/inst/tinytest/test_network_igraph.R |only terra-1.9-34/terra/man/RGB.Rd | 2 terra-1.9-34/terra/man/SpatVector-class.Rd | 2 terra-1.9-34/terra/man/ar_info.Rd | 4 terra-1.9-34/terra/man/as.character.Rd | 9 terra-1.9-34/terra/man/ext.Rd | 2 terra-1.9-34/terra/man/extract.Rd | 2 terra-1.9-34/terra/man/grid.Rd | 4 terra-1.9-34/terra/man/is.flipped.Rd | 2 terra-1.9-34/terra/man/make.RGB.Rd |only terra-1.9-34/terra/man/makeVRT.Rd | 2 terra-1.9-34/terra/man/mappal.Rd | 2 terra-1.9-34/terra/man/nearby.Rd | 2 terra-1.9-34/terra/man/netw.Rd |only terra-1.9-34/terra/man/regress.Rd | 46 - terra-1.9-34/terra/man/shade.Rd | 2 terra-1.9-34/terra/man/shortestPath.Rd |only terra-1.9-34/terra/man/sprc.Rd | 4 terra-1.9-34/terra/man/terra-package.Rd | 8 terra-1.9-34/terra/man/tessellate.Rd | 2 terra-1.9-34/terra/man/topology.Rd | 10 terra-1.9-34/terra/man/units.Rd | 4 terra-1.9-34/terra/man/varnames.Rd | 6 terra-1.9-34/terra/man/vector_layers.Rd | 4 terra-1.9-34/terra/man/voronoi.Rd | 2 terra-1.9-34/terra/man/writeNetwork.Rd |only terra-1.9-34/terra/man/zonal.Rd | 4 terra-1.9-34/terra/src/Makevars.ucrt | 1 terra-1.9-34/terra/src/RcppExports.cpp | 11 terra-1.9-34/terra/src/RcppFunctions.cpp | 121 ++ terra-1.9-34/terra/src/RcppModule.cpp | 50 - terra-1.9-34/terra/src/crs.cpp | 48 + terra-1.9-34/terra/src/crs.h | 19 terra-1.9-34/terra/src/dijkstra.h |only terra-1.9-34/terra/src/distRaster.cpp | 2 terra-1.9-34/terra/src/extract.cpp | 334 +++++++ terra-1.9-34/terra/src/file_utils.cpp | 52 + terra-1.9-34/terra/src/file_utils.h | 2 terra-1.9-34/terra/src/focal.cpp | 1 terra-1.9-34/terra/src/gdal_algs.cpp | 35 terra-1.9-34/terra/src/gdal_multidimensional.cpp | 125 ++ terra-1.9-34/terra/src/gdalio.cpp | 23 terra-1.9-34/terra/src/geos_methods.cpp | 298 ++++++ terra-1.9-34/terra/src/raster_methods.cpp | 37 terra-1.9-34/terra/src/raster_stats.cpp | 26 terra-1.9-34/terra/src/read_gdal.cpp | 159 +++ terra-1.9-34/terra/src/read_ogr.cpp | 39 terra-1.9-34/terra/src/sample.cpp | 2 terra-1.9-34/terra/src/show.cpp | 29 terra-1.9-34/terra/src/spatBase.h | 5 terra-1.9-34/terra/src/spatNetwork.cpp |only terra-1.9-34/terra/src/spatNetwork.h |only terra-1.9-34/terra/src/spatNetwork_gnm.cpp |only terra-1.9-34/terra/src/spatRaster.cpp | 1 terra-1.9-34/terra/src/spatRaster.h | 1 terra-1.9-34/terra/src/spatRasterMultiple.h | 1 terra-1.9-34/terra/src/spatVector.cpp | 45 - terra-1.9-34/terra/src/spatVector.h | 4 terra-1.9-34/terra/src/vector_methods.cpp | 150 ++- terra-1.9-34/terra/src/write_gdal.cpp | 5 87 files changed, 2390 insertions(+), 752 deletions(-)
More information about OrdinalCompositions at CRAN
Permanent link
Title: Generalized Additive Models with Hyper Column
Description: An interactive HTML widget of the perspective plot for generalized additive models. An alternative solution of the function mgcv::vis.gam(). This R package author has retired from academic research. Accordingly, this package should not be considered a validated tool for use in peer-reviewed publications or as the basis for grant applications. Backward compatibility with user-code published in <doi:10.1093/bioinformatics/btaf182> and <doi:10.1093/bioinformatics/btaf430> is not maintained in versions >= 0.3.0 of this package. The authors of those publications are the appropriate contacts for reproducibility inquiries.
Author: Tingting Zhan [aut, cre] ,
Erjia Cui [ctb]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between hyper.gam versions 0.3.1 dated 2026-06-13 and 0.3.2 dated 2026-06-19
DESCRIPTION | 10 ++++----- MD5 | 9 ++++---- NAMESPACE | 4 +++ R/0PACKAGE.R | 49 ++++++++++++++++++++++++++++++++++++++++++++++- build |only man/hyper.gam-package.Rd | 14 +++++++++++-- 6 files changed, 74 insertions(+), 12 deletions(-)
Title: Augmented and Penalized Minimization Method L0
Description: Fit linear, logistic and Cox models regularized with L0, lasso
(L1), elastic-net (L1 and L2), or net (L1 and Laplacian) penalty, and
their adaptive forms, such as adaptive lasso / elastic-net and net
adjusting for signs of linked coefficients. It solves the L0 penalty
problem by simultaneously selecting regularization parameters and
performing hard-thresholding or selecting the number of non-zeros. This
augmented and penalized minimization method provides an approximation
solution to the L0 penalty problem, but runs as fast as L1 regularization.
The package uses a one-step coordinate descent algorithm and runs extremely
fast by taking into account the sparsity structure of coefficients. It can
handle very high dimensional data and has superior selection performance.
Author: Xiang Li [aut, cre],
Shanghong Xie [aut],
Donglin Zeng [aut],
Yuanjia Wang [aut]
Maintainer: Xiang Li <spiritcoke@gmail.com>
This is a re-admission after prior archival of version 0.10 dated 2020-01-19
Diff between APML0 versions 0.10 dated 2020-01-19 and 0.11 dated 2026-06-19
DESCRIPTION | 36 MD5 | 29 NAMESPACE | 3 R/APML0.R | 26 R/RcppExports.R | 104 + R/net_cox.R | 231 ++- R/net_lm.R | 300 ++++- R/net_logit.R | 192 ++- build |only inst/CITATION |only inst/WORDLIST |only inst/include/APML0_RcppExports.h | 300 +++-- man/APML0-package.Rd | 98 - man/APML0.Rd | 309 +++-- man/print.APML0.Rd | 41 src/APML0.cpp | 2303 ++++++++++++++++++++++++--------------- src/RcppExports.cpp | 747 +++++++++--- 17 files changed, 3143 insertions(+), 1576 deletions(-)
Title: UK Flood Estimation
Description: Functions to implement the methods of the Flood Estimation Handbook (FEH), associated updates and the revitalised flood hydrograph model (ReFH). Currently the package uses NRFA peak flow dataset version 14. Aside from FEH functionality, further hydrological functions are available. Most of the methods implemented in this package are described in one or more of the following: "Flood Estimation Handbook", Centre for Ecology & Hydrology (1999, ISBN:0 948540 94 X). "Flood Estimation Handbook Supplementary Report No. 1", Kjeldsen (2007, ISBN:0 903741 15 7). "Regional Frequency Analysis - an approach based on L-moments", Hosking & Wallis (1997, ISBN: 978 0 521 01940 8). "Making better use of local data in flood frequency estimation", Environment Agency (2017, ISBN: 978 1 84911 387 8). "Sampling uncertainty of UK design flood estimation" , Hammond (2021, <doi:10.2166/nh.2021.059>). "The FEH 2025 statistical method update", UK Centre for Ecology and Hydrology (2025). "Low flow es [...truncated...]
Author: Anthony Hammond [aut, cre]
Maintainer: Anthony Hammond <agqhammond@gmail.com>
Diff between UKFE versions 2.0.1 dated 2026-05-01 and 2.0.2 dated 2026-06-19
DESCRIPTION | 11 ++ MD5 | 120 +++++++++++++++++++----------- NEWS.md |only R/All.R | 16 ++-- R/FEH08.R | 44 ++++++++--- R/GetData.R | 51 +++++++++++- README.md |only build |only data/AMPF.rda |binary data/PeakFlowData.rda |binary data/ThamesPQ.rda |binary data/UKOutline.rda |binary inst |only man/AMImport.Rd | 60 +++++++-------- man/AddGauge.Rd | 104 +++++++++++++------------- man/BFI.Rd | 70 ++++++++--------- man/Bootstrap.Rd | 92 +++++++++++------------ man/CDsXML.Rd | 58 +++++++------- man/DDF.Rd | 82 ++++++++++---------- man/DDFImport.Rd | 86 ++++++++++----------- man/DesHydro.Rd | 102 ++++++++++++------------- man/DiagPlots.Rd | 65 +++++++--------- man/DonAdj.Rd | 70 ++++++++--------- man/ERPlot.Rd | 96 ++++++++++++------------ man/EVPool.Rd | 110 +++++++++++++-------------- man/FlowSplit.Rd | 116 ++++++++++++++--------------- man/GetCDs.Rd | 58 +++++++------- man/GetDataEA_QH.Rd | 154 +++++++++++++++++++------------------- man/GetDataNRFA.Rd | 78 +++++++++---------- man/HydroPlot.Rd | 116 ++++++++++++++--------------- man/Kappa3GF.Rd | 66 ++++++++-------- man/LRatioChange.Rd | 78 +++++++++---------- man/LcvUrb.Rd | 64 ++++++++-------- man/NonFloodAdjPool.Rd | 76 +++++++++---------- man/OptimPars.Rd | 64 ++++++++-------- man/POTextract.Rd | 144 ++++++++++++++++++------------------ man/Pool.Rd | 92 +++++++++++------------ man/PoolEst.Rd | 118 ++++++++++++++--------------- man/QMED.Rd | 152 +++++++++++++++++++------------------- man/QMEDDonEq.Rd | 126 +++++++++++++++---------------- man/QMED_FEH08.Rd | 4 - man/QuickResults.Rd | 107 +++++++++++++-------------- man/Rating.Rd | 80 ++++++++++---------- man/ReFH.Rd | 194 ++++++++++++++++++++++++------------------------- man/TrendTest.Rd | 94 +++++++++++------------ man/UAF.Rd | 80 ++++++++++---------- man/UEF.Rd | 56 +++++++------- man/Uncertainty.Rd | 94 +++++++++++------------ man/Zdists.Rd | 64 ++++++++-------- vignettes |only 50 files changed, 1806 insertions(+), 1706 deletions(-)
Title: Reproducible Research with a Table of R Codes
Description: Makes documents containing plots and tables from a table of R codes.
Can make "HTML", "pdf('LaTex')", "docx('MS Word')" and "pptx('MS Powerpoint')" documents with or without R code.
In the package, modularized 'shiny' app codes are provided. These modules are intended for reuse across applications.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between rrtable versions 0.3.0 dated 2022-04-04 and 0.3.4 dated 2026-06-19
DESCRIPTION | 8 - MD5 | 32 ++-- NAMESPACE | 1 NEWS.md | 174 ++++++++++--------------- R/add_2ggplots.R | 2 R/chooserEx.R | 4 R/data2office.R | 10 - R/data2plotzip.R | 2 R/df2flextable.R | 4 R/image2pptx.R | 7 - R/plot2pptx.R | 34 ++++ R/pptxList.R | 2 build/vignette.rds |binary inst/doc/Update.R | 34 ++-- inst/doc/Update.html | 159 +++++++++++----------- inst/doc/rrtable.R | 18 +- inst/doc/rrtable.html | 348 +++++++++++++++++++++----------------------------- 17 files changed, 398 insertions(+), 441 deletions(-)
Title: Creating and Working with Pedigrees and Marker Data
Description: A comprehensive collection of tools for creating,
manipulating and visualising pedigrees and genetic marker data.
Pedigrees can be read from text files or created on the fly with
built-in functions. A range of utilities enable modifications like
adding or removing individuals, breaking loops, and merging pedigrees.
An online tool for creating pedigrees interactively, based on
'pedtools', is available at <https://magnusdv.shinyapps.io/quickped>.
'pedtools' is the hub of the 'pedsuite', a collection of packages for
pedigree analysis. A detailed presentation of the 'pedsuite' is given
in the book 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedtools versions 2.10.0 dated 2026-02-01 and 2.11.0 dated 2026-06-19
DESCRIPTION | 8 MD5 | 95 +-- NAMESPACE | 4 NEWS.md | 25 R/getMap.R | 6 R/marker.R | 10 R/marker_allelematrix.R | 36 - R/marker_attach.R | 10 R/marker_database.R | 4 R/marker_distribute.R | 6 R/marker_genomatrix.R | 4 R/marker_locusattributes.R | 10 R/marker_print.R | 2 R/marker_setattr_inplace.R | 2 R/marker_transfer.R | 4 R/mergePed.R | 10 R/ped.R | 152 ++--- R/ped_complex.R | 4 R/ped_connected.R | 71 +- R/ped_convert.R | 4 R/ped_founder-inbreeding.R | 18 R/ped_internal.R | 8 R/ped_labels.R | 12 R/ped_loops.R | 773 +++++++++++++++++++++--------- R/ped_methods.R | 2 R/ped_modify.R | 16 R/ped_plot.R | 2 R/ped_sex.R | 2 R/ped_subgroups.R | 60 ++ R/ped_utils.R | 127 ++-- R/plot_methods.R | 6 R/randomPed.R | 69 +- R/utils.R | 13 build/vignette.rds |binary inst/doc/pedtools.html | 6 man/breakLoops.Rd |only man/inbreedingLoops.Rd | 96 --- man/newPed.Rd | 4 man/ped.Rd | 4 man/ped_subgroups.Rd | 16 man/ped_utils.Rd | 8 man/pedtools-package.Rd | 5 man/validatePed.Rd | 15 tests/testthat/test-marker-allelematrix.R | 12 tests/testthat/test-ped-creation.R | 26 - tests/testthat/test-ped-loops.R | 56 ++ tests/testthat/test-ped-relatives.R | 12 tests/testthat/test-ped-utils.R | 33 + tests/testthat/test-ped-various.R | 9 49 files changed, 1204 insertions(+), 673 deletions(-)
Title: Interactive Graphics for QTL Experiments
Description: Web-based interactive charts (using D3.js) for the analysis of
experimental crosses to identify genetic loci (quantitative trait
loci, QTL) contributing to variation in quantitative traits.
Broman (2015) <doi:10.1534/genetics.114.172742>.
Author: Karl W Broman [aut, cre] ,
Michael Bostock [ctb, cph] ,
jQuery Foundation [cph] ,
jQuery contributors [ctb] ,
jQuery UI contributors [ctb]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtlcharts versions 0.20 dated 2026-05-23 and 0.22 dated 2026-06-19
DESCRIPTION | 8 LICENSE | 4 MD5 | 241 ++++++----- NAMESPACE | 3 NEWS.md | 60 ++ R/chartOpts.R | 16 R/grav-data.R | 2 R/iboxplot.R | 6 R/idotplot.R | 10 R/iheatmap.R | 2 R/ipleiotropy.R | 1 R/iplot.R | 2 R/iplotCorr.R | 15 R/iplotCurves.R | 2 R/iplotMScanone.R | 4 R/iplotMap.R | 17 R/iplotPXG.R | 6 R/iplotRF.R | 15 R/iplotScanone.R | 2 R/iplotScantwo.R | 2 R/itimeplot.R |only R/itriplot.R | 2 R/qtlcharts.R | 8 R/scat2scat.R | 2 README.md | 25 - build |only inst/LICENSE | 4 inst/htmlwidgets/iboxplot.js | 18 inst/htmlwidgets/iboxplot.yaml | 4 inst/htmlwidgets/idotplot.js | 18 inst/htmlwidgets/idotplot.yaml | 4 inst/htmlwidgets/iheatmap.js | 18 inst/htmlwidgets/iheatmap.yaml | 4 inst/htmlwidgets/ipleiotropy.js | 18 inst/htmlwidgets/ipleiotropy.yaml | 4 inst/htmlwidgets/iplot.js | 18 inst/htmlwidgets/iplot.yaml | 4 inst/htmlwidgets/iplotCorr.js | 26 - inst/htmlwidgets/iplotCorr.yaml | 4 inst/htmlwidgets/iplotCurves.js | 18 inst/htmlwidgets/iplotCurves.yaml | 4 inst/htmlwidgets/iplotMScanone.js | 19 inst/htmlwidgets/iplotMScanone.yaml | 4 inst/htmlwidgets/iplotMap.js | 18 inst/htmlwidgets/iplotMap.yaml | 4 inst/htmlwidgets/iplotRF.js | 18 inst/htmlwidgets/iplotRF.yaml | 4 inst/htmlwidgets/iplotScanone.js | 19 inst/htmlwidgets/iplotScanone.yaml | 4 inst/htmlwidgets/iplotScantwo.coffee | 1 inst/htmlwidgets/iplotScantwo.js | 21 - inst/htmlwidgets/iplotScantwo.yaml | 4 inst/htmlwidgets/itimeplot.coffee |only inst/htmlwidgets/itimeplot.js |only inst/htmlwidgets/itimeplot.yaml |only inst/htmlwidgets/itriplot.js | 18 inst/htmlwidgets/itriplot.yaml | 4 inst/htmlwidgets/lib/d3panels/d3panels.min.js | 2 inst/htmlwidgets/lib/d3panels/package.json | 2 inst/htmlwidgets/lib/qtlcharts/iboxplot.coffee | 6 inst/htmlwidgets/lib/qtlcharts/iboxplot.js | 129 +++--- inst/htmlwidgets/lib/qtlcharts/idotplot.coffee | 2 inst/htmlwidgets/lib/qtlcharts/idotplot.js | 18 inst/htmlwidgets/lib/qtlcharts/iheatmap.coffee | 2 inst/htmlwidgets/lib/qtlcharts/iheatmap.js | 59 +- inst/htmlwidgets/lib/qtlcharts/ipleiotropy.coffee | 4 inst/htmlwidgets/lib/qtlcharts/ipleiotropy.js | 231 +++-------- inst/htmlwidgets/lib/qtlcharts/iplot.coffee | 2 inst/htmlwidgets/lib/qtlcharts/iplot.js | 18 inst/htmlwidgets/lib/qtlcharts/iplotCorr.coffee | 14 inst/htmlwidgets/lib/qtlcharts/iplotCorr.js | 161 +++---- inst/htmlwidgets/lib/qtlcharts/iplotCorr_noscat.coffee | 5 inst/htmlwidgets/lib/qtlcharts/iplotCorr_noscat.js | 79 +-- inst/htmlwidgets/lib/qtlcharts/iplotCurves.coffee | 4 inst/htmlwidgets/lib/qtlcharts/iplotCurves.js | 70 +-- inst/htmlwidgets/lib/qtlcharts/iplotMScanone_eff.coffee | 4 inst/htmlwidgets/lib/qtlcharts/iplotMScanone_eff.js | 92 ++-- inst/htmlwidgets/lib/qtlcharts/iplotMScanone_noeff.coffee | 4 inst/htmlwidgets/lib/qtlcharts/iplotMScanone_noeff.js | 98 ++-- inst/htmlwidgets/lib/qtlcharts/iplotMap.coffee | 37 + inst/htmlwidgets/lib/qtlcharts/iplotMap.js | 97 +++- inst/htmlwidgets/lib/qtlcharts/iplotRF.coffee | 4 inst/htmlwidgets/lib/qtlcharts/iplotRF.js | 112 +++-- inst/htmlwidgets/lib/qtlcharts/iplotScanone_ci.coffee | 3 inst/htmlwidgets/lib/qtlcharts/iplotScanone_ci.js | 121 +---- inst/htmlwidgets/lib/qtlcharts/iplotScanone_noeff.coffee | 2 inst/htmlwidgets/lib/qtlcharts/iplotScanone_noeff.js | 16 inst/htmlwidgets/lib/qtlcharts/iplotScanone_pxg.coffee | 3 inst/htmlwidgets/lib/qtlcharts/iplotScanone_pxg.js | 68 +-- inst/htmlwidgets/lib/qtlcharts/iplotScantwo.coffee | 7 inst/htmlwidgets/lib/qtlcharts/iplotScantwo.js | 286 +++++++------- inst/htmlwidgets/lib/qtlcharts/itimeplot.coffee |only inst/htmlwidgets/lib/qtlcharts/itimeplot.js |only inst/htmlwidgets/lib/qtlcharts/itriplot.coffee | 2 inst/htmlwidgets/lib/qtlcharts/itriplot.js | 23 - inst/htmlwidgets/lib/qtlcharts/scat2scat.coffee | 3 inst/htmlwidgets/lib/qtlcharts/scat2scat.js | 25 - inst/htmlwidgets/package.json | 4 inst/htmlwidgets/scat2scat.js | 18 inst/htmlwidgets/scat2scat.yaml | 4 man/cbindQTLeffects.Rd | 4 man/estQTLeffects.Rd | 12 man/figures |only man/geneExpr.Rd | 4 man/grav.Rd | 6 man/iboxplot.Rd | 6 man/idotplot.Rd | 19 man/iheatmap.Rd | 10 man/ipleiotropy.Rd | 25 - man/iplot.Rd | 8 man/iplotCorr.Rd | 26 - man/iplotCurves.Rd | 4 man/iplotMScanone.Rd | 24 - man/iplotMap.Rd | 10 man/iplotPXG.Rd | 22 - man/iplotRF.Rd | 21 - man/iplotScanone.Rd | 31 - man/iplotScantwo.Rd | 22 - man/itimeplot.Rd |only man/itriplot.Rd | 4 man/qtlcharts-package.Rd | 23 - man/qtlcharts-shiny.Rd | 27 - man/scat2scat.Rd | 10 man/setScreenSize.Rd | 4 tests/Rmdtest/Rmdtest.Rmd | 19 tests/Rmdtest/itimeplot.Rmd |only tests/htmltest/itimeplot.R |only 127 files changed, 1553 insertions(+), 1388 deletions(-)
Title: Spatial Ecology Miscellaneous Methods
Description: Collection of R functions and data sets for the support of spatial ecology analyses with a focus on pre, core and post modelling analyses of species distribution, niche quantification and community assembly. Written by current and former members and collaborators of the ecospat group of Antoine Guisan, Department of Ecology and Evolution (DEE) and Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Switzerland. Read Di Cola et al. (2016) <doi:10.1111/ecog.02671> for details.
Author: Olivier Broennimann [cre, aut, ctb],
Valeria Di Cola [aut, ctb],
Blaise Petitpierre [ctb],
Frank Breiner [ctb],
Daniel Scherrer [ctb],
Manuela D`Amen [ctb],
Christophe Randin [ctb],
Robin Engler [ctb],
Wim Hordijk [ctb],
Heidi Mod [ctb],
Julien Potti [...truncated...]
Maintainer: Olivier Broennimann <olivier.broennimann@unil.ch>
Diff between ecospat versions 4.1.3 dated 2026-01-23 and 4.1.4 dated 2026-06-19
ecospat-4.1.3/ecospat/R/ecospat.CCV.R |only ecospat-4.1.3/ecospat/man/ecospat.CCV.communityEvaluation.bin.Rd |only ecospat-4.1.3/ecospat/man/ecospat.CCV.communityEvaluation.prob.Rd |only ecospat-4.1.3/ecospat/man/ecospat.CCV.createDataSplitTable.Rd |only ecospat-4.1.3/ecospat/man/ecospat.CCV.modeling.Rd |only ecospat-4.1.4/ecospat/DESCRIPTION | 50 ecospat-4.1.4/ecospat/MD5 | 35 ecospat-4.1.4/ecospat/NAMESPACE | 4 ecospat-4.1.4/ecospat/NEWS | 9 ecospat-4.1.4/ecospat/R/ecospat.ESM.R | 763 +++++----- ecospat-4.1.4/ecospat/R/ecospat.ESM.responsePlot.R | 212 +- ecospat-4.1.4/ecospat/R/ecospat.cv.R | 195 +- ecospat-4.1.4/ecospat/build/partial.rdb |binary ecospat-4.1.4/ecospat/build/vignette.rds |binary ecospat-4.1.4/ecospat/inst/doc/vignette_ecospat_package.R | 105 - ecospat-4.1.4/ecospat/inst/doc/vignette_ecospat_package.Rmd | 111 - ecospat-4.1.4/ecospat/inst/doc/vignette_ecospat_package.pdf |binary ecospat-4.1.4/ecospat/man/ecospat-package.Rd | 2 ecospat-4.1.4/ecospat/man/ecospat.ESM.Modeling.Rd | 30 ecospat-4.1.4/ecospat/man/ecospat.ESM.Projection.Rd | 8 ecospat-4.1.4/ecospat/vignettes/vignette_ecospat_package.Rmd | 111 - 21 files changed, 865 insertions(+), 770 deletions(-)
Title: Estimation of Prevalence Ratios via Logistic Regression Models
Description: Estimates adjusted prevalence ratios (PR) and their confidence
intervals from logistic regression models, addressing the well-known
limitation of odds ratios (OR) as approximations to PR in cross-sectional
studies with common outcomes. Supports independent observations (glm()),
clustered/multilevel data (glmer() from 'lme4'), longitudinal data via
Generalised Estimating Equations (geeglm() from 'geepack'), and complex
survey designs (svyglm() from 'survey'). Inference is available via the
delta method (conditional and marginal standardisation) and via
bootstrap (normal-approximation and percentile intervals).
Continuous covariates are handled through user-specified or
median-based reference values; flexible baseline specification
allows any reference category to be chosen for factor predictors.
Based on the methodology described in Amorim & Ospina (2021)
<doi:10.1590/0001-3765202120190316>.
Author: Raydonal Ospina [aut, cre] ,
Leila D. Amorim [aut]
Maintainer: Raydonal Ospina <raydonal@de.ufpe.br>
This is a re-admission after prior archival of version 1.2 dated 2013-09-19
Diff between prLogistic versions 1.2 dated 2013-09-19 and 2.0.2 dated 2026-06-19
prLogistic-1.2/prLogistic/ChangeLog |only prLogistic-1.2/prLogistic/R/prcorrlog.R |only prLogistic-1.2/prLogistic/data/LBW.txt.gz |only prLogistic-1.2/prLogistic/data/Thailand.txt.gz |only prLogistic-1.2/prLogistic/data/Toenail.txt.gz |only prLogistic-1.2/prLogistic/data/UIS.txt.gz |only prLogistic-1.2/prLogistic/data/downer.txt.gz |only prLogistic-1.2/prLogistic/data/titanic.txt.gz |only prLogistic-1.2/prLogistic/man/notdocumentedyet.Rd |only prLogistic-2.0.2/prLogistic/DESCRIPTION | 57 +++- prLogistic-2.0.2/prLogistic/MD5 | 80 ++++- prLogistic-2.0.2/prLogistic/NAMESPACE | 35 +- prLogistic-2.0.2/prLogistic/NEWS.md |only prLogistic-2.0.2/prLogistic/R/class-prLogistic.R |only prLogistic-2.0.2/prLogistic/R/data-documentation.R |only prLogistic-2.0.2/prLogistic/R/prLogistic-package.R |only prLogistic-2.0.2/prLogistic/R/prLogisticBoot.R |only prLogistic-2.0.2/prLogistic/R/prLogisticDelta.R |only prLogistic-2.0.2/prLogistic/R/prLogisticGEE.R |only prLogistic-2.0.2/prLogistic/R/prLogisticSurvey.R |only prLogistic-2.0.2/prLogistic/R/standardisation.R |only prLogistic-2.0.2/prLogistic/R/utils-internal.R |only prLogistic-2.0.2/prLogistic/README.md |only prLogistic-2.0.2/prLogistic/build |only prLogistic-2.0.2/prLogistic/data/LBW.rda |only prLogistic-2.0.2/prLogistic/data/Thailand.rda |only prLogistic-2.0.2/prLogistic/data/Toenail.rda |only prLogistic-2.0.2/prLogistic/data/UIS.rda |only prLogistic-2.0.2/prLogistic/data/downer.rda |only prLogistic-2.0.2/prLogistic/data/titanic.rda |only prLogistic-2.0.2/prLogistic/inst |only prLogistic-2.0.2/prLogistic/man/LBW.Rd | 90 +++--- prLogistic-2.0.2/prLogistic/man/Thailand.Rd | 81 ++--- prLogistic-2.0.2/prLogistic/man/Toenail.Rd | 98 ++----- prLogistic-2.0.2/prLogistic/man/UIS.Rd | 97 ++---- prLogistic-2.0.2/prLogistic/man/coef.prLogistic.Rd |only prLogistic-2.0.2/prLogistic/man/confint.prLogistic.Rd |only prLogistic-2.0.2/prLogistic/man/downer.Rd | 81 +---- prLogistic-2.0.2/prLogistic/man/plot.prLogistic.Rd |only prLogistic-2.0.2/prLogistic/man/prLogistic-package.Rd |only prLogistic-2.0.2/prLogistic/man/prLogisticBootCond.Rd | 156 ++++------- prLogistic-2.0.2/prLogistic/man/prLogisticBootMarg.Rd | 155 +++-------- prLogistic-2.0.2/prLogistic/man/prLogisticDelta.Rd | 251 ++++++++++-------- prLogistic-2.0.2/prLogistic/man/prLogisticGEE.Rd |only prLogistic-2.0.2/prLogistic/man/prLogisticSurvey.Rd |only prLogistic-2.0.2/prLogistic/man/print.prLogistic.Rd |only prLogistic-2.0.2/prLogistic/man/summary.prLogistic.Rd |only prLogistic-2.0.2/prLogistic/man/titanic.Rd | 93 ++---- prLogistic-2.0.2/prLogistic/tests |only prLogistic-2.0.2/prLogistic/vignettes |only 50 files changed, 602 insertions(+), 672 deletions(-)
More information about nirs4alldatasets at CRAN
Permanent link
More information about nhscancerwaits at CRAN
Permanent link
Title: Mixed Models for Repeated Measures
Description: Mixed models for repeated measures (MMRM) are a popular
choice for analyzing longitudinal continuous outcomes in randomized
clinical trials and beyond; see Cnaan, Laird and Slasor (1997)
<doi:10.1002/(SICI)1097-0258(19971030)16:20%3C2349::AID-SIM667%3E3.0.CO;2-E>
for a tutorial and Mallinckrodt, Lane, Schnell, Peng and Mancuso
(2008) <doi:10.1177/009286150804200402> for a review. This package
implements MMRM based on the marginal linear model without random
effects using Template Model Builder ('TMB') which enables fast and
robust model fitting. Users can specify a variety of covariance
matrices, weight observations, fit models with restricted or standard
maximum likelihood inference, perform hypothesis testing with
Satterthwaite or Kenward-Roger adjustment, and extract least square
means estimates by using 'emmeans'.
Author: Daniel Sabanes Bove [aut, cre] ,
Liming Li [aut] ,
Julia Dedic [aut],
Doug Kelkhoff [aut],
Kevin Kunzmann [aut],
Brian Matthew Lang [aut],
Christian Stock [aut],
Ya Wang [aut],
Craig Gower-Page [ctb],
Dan James [aut],
Jonathan Sidi [aut],
Daniel Leib [...truncated...]
Maintainer: Daniel Sabanes Bove <daniel.sabanes_bove@rconis.com>
Diff between mmrm versions 0.3.17 dated 2026-01-08 and 0.3.18 dated 2026-06-19
DESCRIPTION | 19 MD5 | 112 NEWS.md | 13 R/cov_struct.R | 15 R/fit.R | 30 R/gcomp.R |only R/interop-emmeans.R | 190 + R/kenwardroger.R | 4 R/mmrm-methods.R | 3 R/tmb.R | 75 R/utils.R | 3 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 17 inst/doc/covariance.Rmd | 12 inst/doc/covariance.html | 14 inst/doc/introduction.R | 42 inst/doc/introduction.html | 2838 +++++++++++------------ inst/doc/kenward.Rmd | 59 inst/doc/kenward.html | 60 inst/doc/mmrm_review_methods.html | 79 inst/doc/model_robust_estimator.R |only inst/doc/model_robust_estimator.Rmd |only inst/doc/model_robust_estimator.html |only inst/doc/predict.Rmd | 10 inst/doc/predict.html | 13 man/COV_TYPES.Rd | 1 man/as.cov_struct.Rd | 6 man/cov_struct.Rd | 6 man/covariance_types.Rd | 14 man/emmeans_support.Rd | 2 man/fit_mmrm.Rd | 7 man/h_df_to_tibble.Rd | 2 man/h_mmrm_tmb_data.Rd | 21 man/mmrm-package.Rd | 3 man/mmrm.Rd | 12 man/mmrm_control.Rd | 10 man/position_symbol.Rd | 2 man/reexports.Rd | 2 man/stats_anova.Rd | 2 src/covariance.h | 16 src/derivatives.h | 64 src/empirical.cpp | 2 src/jacobian.cpp | 2 src/kr_comp.cpp | 2 tests/testthat/_snaps/kenwardroger.md | 15 tests/testthat/helper-examples.R | 26 tests/testthat/test-emmeans.R | 63 tests/testthat/test-fit.R | 38 tests/testthat/test-gcomp.R |only tests/testthat/test-interop-emmeans.R |only tests/testthat/test-kenwardroger.R | 29 tests/testthat/test-tmb-methods.R | 34 tests/testthat/test-tmb.R | 108 tests/testthat/test-utils.R | 8 vignettes/covariance.Rmd | 12 vignettes/kenward.Rmd | 59 vignettes/model_robust_estimator.Rmd |only vignettes/predict.Rmd | 10 vignettes/subsections/_intro-customizations.Rmd | 55 vignettes/subsections/_intro-customizations.html |only 61 files changed, 2705 insertions(+), 1536 deletions(-)
Title: Calibrated Color Ramps
Description: Value-calibrated color ramps can be useful to emphasize patterns in data from complex distributions. Colors can be tied to specific values, and the association can be expanded into full color ramps that also include the relationship between colors and values. Such ramps can be used in a variety of cases when heatmap-type plots are necessary, including the visualization of vector and raster spatial data, such as topographies.
Author: Adam T. Kocsis [cre, aut] ,
Deutsche Forschungsgemeinschaft [fnd],
FAU GeoZentrum Nordbayern [fnd]
Maintainer: Adam T. Kocsis <adam.t.kocsis@gmail.com>
Diff between rampage versions 0.2.0 dated 2025-07-07 and 0.2.1 dated 2026-06-19
DESCRIPTION | 10 +++++----- MD5 | 18 ++++++++++-------- NEWS.md | 11 ++++++++++- R/palettes.R | 19 ++++++++++++++++++- build/vignette.rds |binary data/bathymetry.RData |only data/paleomap.RData |binary data/topos.RData |binary inst/doc/rampage.html | 17 +++++++++-------- man/bathymetry.Rd |only man/topos.Rd | 3 ++- 11 files changed, 54 insertions(+), 24 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-19 1.1.0
2024-10-23 1.0.1
2024-06-06 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-06 1.1.1
2025-09-13 1.1.0
2024-04-05 1.0.1
2022-09-13 1.0.0
Title: Diagnostics for OMOP Common Data Model Drug Records
Description: Ingredient specific diagnostics for drug exposure records in the Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Ger Inberg [aut, cre] ,
Edward Burn [aut] ,
Theresa Burkard [aut] ,
Yuchen Guo [ctb] ,
Marti Catala [ctb] ,
Mike Du [ctb] ,
Xintong Li [ctb] ,
Ross Williams [ctb] ,
Erasmus MC [cph]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between DrugExposureDiagnostics versions 1.1.7 dated 2026-04-15 and 1.1.8 dated 2026-06-19
DESCRIPTION | 6 - MD5 | 44 ++++---- NEWS.md | 4 R/checkVerbatimEndDate.R | 2 README.md | 105 +++++++++++-------- build/vignette.rds |binary inst/doc/DaysSupply.html | 52 ++++----- inst/doc/DiagnosticsSummary.html | 32 +++--- inst/doc/DrugDose.html | 36 +++--- inst/doc/DrugDuration.html | 46 ++++---- inst/doc/DrugSig.html | 26 ++-- inst/doc/DrugSourceConcepts.html | 24 ++-- inst/doc/DrugTypes.html | 26 ++-- inst/doc/IntroductionToDrugExposureDiagnostics.R | 13 ++ inst/doc/IntroductionToDrugExposureDiagnostics.Rmd | 17 ++- inst/doc/IntroductionToDrugExposureDiagnostics.html | 106 +++++++++++--------- inst/doc/Missingness.html | 46 ++++---- inst/doc/Quantity.html | 40 +++---- inst/doc/Routes.html | 26 ++-- inst/doc/VerbatimEndDate.html | 34 +++--- tests/testthat/test-CheckVerbatimEndDate.R | 18 +++ tests/testthat/test-SyntheaSqlServer.R | 2 vignettes/IntroductionToDrugExposureDiagnostics.Rmd | 17 ++- 23 files changed, 406 insertions(+), 316 deletions(-)
More information about DrugExposureDiagnostics at CRAN
Permanent link
Title: Noncompartmental Analysis for Pharmacokinetic Report
Description: Conduct a noncompartmental analysis with industrial strength.
Some features are
1) CDISC SDTM terms
2) Automatic or manual slope selection
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
5) Produce pdf, rtf, text report files.
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut, cre],
Michael E. Schaffer [ctb, cph]
Maintainer: Kyun-Seop Bae <k@acr.kr>
This is a re-admission after prior archival of version 0.6.0 dated 2026-04-24
Diff between ncar versions 0.6.0 dated 2026-04-24 and 0.6.1 dated 2026-06-19
DESCRIPTION | 30 +++++++++++++++++++----------- MD5 | 7 ++++--- NAMESPACE | 16 ++++++++++++++-- R/rtf_utils.R |only inst/NEWS.Rd | 5 +++++ 5 files changed, 42 insertions(+), 16 deletions(-)
Title: Flexible, Extensible, & Reproducible Pupillometry Preprocessing
Description: Pupillometry offers a non-invasive window into the mind and has been used extensively as a psychophysiological readout of arousal signals linked with cognitive processes like attention, stress, and emotional states [Clewett et al. (2020) <doi:10.1038/s41467-020-17851-9>; Kret & Sjak-Shie (2018) <doi:10.3758/s13428-018-1075-y>; Strauch (2024) <doi:10.1016/j.tins.2024.06.002>]. Yet, despite decades of pupillometry research, many established packages and workflows to date lack design patterns based on Findability, Accessibility, Interoperability, and Reusability (FAIR) principles [see Wilkinson et al. (2016) <doi:10.1038/sdata.2016.18>]. 'eyeris' provides a modular, performant, and extensible preprocessing framework for pupillometry data with BIDS-like organization and interactive output reports [Esteban et al. (2019) <doi:10.1038/s41592-018-0235-4>; Gorgolewski et al. (2016) <doi:10.1038/sdata.2016.44>]. Development was supported, in part, by the S [...truncated...]
Author: Shawn Schwartz [aut, cre] ,
Mingjian He [ctb],
Haopei Yang [ctb],
Alice Xue [ctb],
Gustavo Santiago-Reyes [ctb]
Maintainer: Shawn Schwartz <shawn.t.schwartz@gmail.com>
Diff between eyeris versions 3.1.0 dated 2026-06-05 and 3.2.0 dated 2026-06-19
DESCRIPTION | 8 MD5 | 145 +++++----- NAMESPACE | 2 NEWS.md | 30 ++ R/pipeline-bidsify.R | 48 ++- R/pipeline-bin.R | 7 R/pipeline-confounds.R | 83 ++++- R/pipeline-deblink.R | 7 R/pipeline-detransient.R | 7 R/pipeline-detrend.R | 7 R/pipeline-downsample.R | 7 R/pipeline-glassbox.R | 20 + R/pipeline-handler.R | 41 ++ R/pipeline-interpolate.R | 7 R/pipeline-loadasc.R | 7 R/pipeline-lpfilt.R | 7 R/pipeline-zscore.R | 7 R/plot.eyeris.R | 220 +++++++++++++-- R/utils-boilerplate.R |only R/utils-database.R | 75 +++++ R/utils-gallery.R | 19 + R/utils-parsers.R | 7 R/utils-render_report.R | 321 ++++++++++++++++++++--- R/utils-zip-cleanup.R | 8 R/utils-zip-gallery.R | 4 README.md | 64 +++- inst/WORDLIST | 12 inst/doc/anatomy.R | 6 inst/doc/anatomy.Rmd | 36 ++ inst/doc/anatomy.html | 89 ++++++ inst/doc/complete-pipeline.R | 32 ++ inst/doc/complete-pipeline.Rmd | 80 +++++ inst/doc/complete-pipeline.html | 189 +++++++++---- inst/doc/database-guide.R | 27 + inst/doc/database-guide.Rmd | 37 ++ inst/doc/database-guide.html | 70 +++-- inst/doc/epoching-bids-reports.Rmd | 10 inst/doc/epoching-bids-reports.html | 60 ++-- inst/doc/reports.Rmd | 18 - inst/doc/reports.html | 20 - man/bin.Rd | 7 man/boilerplate.Rd |only man/boilerplate_license_note.Rd |only man/bp_num.Rd |only man/build_boilerplate_md.Rd |only man/compute_run_data_loss.Rd |only man/create_epoch_images_zip.Rd | 3 man/deblink.Rd | 7 man/describe_boilerplate_step.Rd |only man/describe_boilerplate_steps.Rd |only man/detransient.Rd | 7 man/detrend.Rd | 7 man/downsample.Rd | 7 man/filter_task_run_dirs.Rd |only man/get_confounds_for_step.Rd | 13 man/get_pre_decimation_block.Rd |only man/interpolate.Rd | 7 man/is_decimated_col.Rd |only man/load_asc.Rd | 7 man/lpfilt.Rd | 7 man/make_prog_summary_plot.Rd | 11 man/make_run_dir_name.Rd |only man/print.eyeris_boilerplate.Rd |only man/print_plots.Rd | 6 man/run_dir_pattern.Rd |only man/save_detrend_plots.Rd | 3 man/save_progressive_summary_plots.Rd | 3 man/slice_epoch_window.Rd |only man/summarize_confounds.Rd | 18 + man/trim_pre_decimation_cols.Rd |only man/zscore.Rd | 7 tests/testthat/test-bidsify-task-run-collision.R |only tests/testthat/test-bin.R | 41 ++ tests/testthat/test-boilerplate.R |only tests/testthat/test-compute_run_data_loss.R |only tests/testthat/test-confounds.R |only tests/testthat/test-database.R | 150 ++++++++++ tests/testthat/test-downsample.R | 69 ++++ tests/testthat/test-plot-distribution.R |only vignettes/anatomy.Rmd | 36 ++ vignettes/complete-pipeline.Rmd | 80 +++++ vignettes/database-guide.Rmd | 37 ++ vignettes/epoching-bids-reports.Rmd | 10 vignettes/reports.Rmd | 18 - 84 files changed, 2024 insertions(+), 381 deletions(-)
Title: Crafting Print-Ready Maps and Layered Visualizations
Description: Simplifying the creation of print-ready maps, this package offers a user-friendly interface derived from 'ggplot2' for handling OpenStreetMap data. It streamlines the map-making process, allowing users to focus on the story their maps tell. Transforming raw geospatial data into informative visualizations is made easy with simple features 'sf' geometries. Whether for urban planning, environmental studies, or impactful public presentations, this tool facilitates straightforward and effective map creation. Enhance the dissemination of spatial information with high-quality, narrative-driven visualizations!
Author: David Willinger [aut, cre, cph]
Maintainer: David Willinger <david.willinger@gmail.com>
Diff between cartographr versions 0.2.4 dated 2025-09-18 and 0.2.5 dated 2026-06-19
DESCRIPTION | 8 MD5 | 74 - NAMESPACE | 42 NEWS.md | 74 - R/cartographr.R | 1690 ++++++++++++++++++-------------------- R/data.R | 66 - R/palette.R | 702 +++++++-------- R/set.R | 282 +++--- R/theme.R | 234 ++--- R/utils.R | 575 ++++++------ R/zzz.R | 30 README.md | 298 +++--- build/vignette.rds |binary inst/doc/cartographr.R | 98 +- inst/doc/cartographr.Rmd | 198 ++-- inst/doc/cartographr.html | 840 +++++++++--------- man/crime.Rd | 40 man/crop.Rd | 72 - man/dot-make_border_ring.Rd | 36 man/get_osmdata.Rd | 160 +-- man/get_palette.Rd | 168 +-- man/osm.Rd | 48 - man/plot_map.Rd | 56 - man/preprocess_map.Rd | 82 - man/print_config.Rd | 38 man/save_map.Rd | 62 - man/set_attribution.Rd | 50 - man/set_output_size.Rd | 46 - man/soho_boundary.Rd | 50 - man/theme_infomap.Rd | 76 - man/theme_poster.Rd | 76 - tests/testthat.R | 24 tests/testthat/test-cartographr.R | 286 +++--- tests/testthat/test-palette.R | 72 - tests/testthat/test-set.R | 160 +-- tests/testthat/test-theme.R | 28 tests/testthat/test-utils.R | 82 - vignettes/cartographr.Rmd | 198 ++-- 38 files changed, 3560 insertions(+), 3561 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-05 1.1.2
2024-12-09 1.0.0
2024-10-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-24 1.0.2
Title: Stable Diffusion Image Generation
Description: Provides Stable Diffusion image generation using the 'ggmlR'
library, with no 'Python' or external API dependencies. Supports
text-to-image and image-to-image generation for SD 1.x, SD 2.x, 'SDXL',
Flux, and 'FLUX.2'. A single sd_generate() function handles the entire pipeline,
including sampling and high-resolution output. Features multi-GPU support,
a 'Shiny' GUI, and runs on CPU or 'Vulkan' GPU across Linux, macOS, and
Windows.
Author: Yuri Baramykov [aut, cre] ,
Georgi Gerganov [ctb, cph] ,
leejet [ctb, cph] ,
stduhpf [ctb] ,
Green-Sky [ctb] ,
wbruna [ctb] ,
akleine [ctb] ,
Martin Raiber [cph] ,
Rich Geldreich [cph] ,
RAD Game Tools [cph] ,
Valve Software [cph] ,
Alex Evans [cph] [...truncated...]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between sd2R versions 0.1.9 dated 2026-04-09 and 0.2.1 dated 2026-06-19
sd2R-0.1.9/sd2R/src/sd/common.hpp |only sd2R-0.1.9/sd2R/src/sd/gguf_reader.hpp |only sd2R-0.1.9/sd2R/src/sd/tokenize_util.cpp |only sd2R-0.1.9/sd2R/src/sd/tokenize_util.h |only sd2R-0.2.1/sd2R/DESCRIPTION | 44 sd2R-0.2.1/sd2R/MD5 | 278 sd2R-0.2.1/sd2R/NAMESPACE | 22 sd2R-0.2.1/sd2R/NEWS.md | 23 sd2R-0.2.1/sd2R/R/RcppExports.R | 68 sd2R-0.2.1/sd2R/R/app.R | 20 sd2R-0.2.1/sd2R/R/image_utils.R | 75 sd2R-0.2.1/sd2R/R/kaggle.R |only sd2R-0.2.1/sd2R/R/lowlevel.R |only sd2R-0.2.1/sd2R/R/model_manager.R | 207 sd2R-0.2.1/sd2R/R/params.R |only sd2R-0.2.1/sd2R/R/pipeline.R | 504 sd2R-0.2.1/sd2R/R/preview.R |only sd2R-0.2.1/sd2R/R/sd2R-package.R | 1 sd2R-0.2.1/sd2R/R/zzz.R | 88 sd2R-0.2.1/sd2R/README.md | 133 sd2R-0.2.1/sd2R/cleanup | 9 sd2R-0.2.1/sd2R/cleanup.win | 8 sd2R-0.2.1/sd2R/configure | 106 sd2R-0.2.1/sd2R/configure.win | 142 sd2R-0.2.1/sd2R/inst/examples/meta_backend_poc_encoder.R |only sd2R-0.2.1/sd2R/inst/examples/meta_backend_smoke.R |only sd2R-0.2.1/sd2R/inst/examples/test_fa_probe.R |only sd2R-0.2.1/sd2R/inst/examples/test_flux_encoders_cpu.R |only sd2R-0.2.1/sd2R/inst/examples/test_flux_full_cpu.R |only sd2R-0.2.1/sd2R/inst/examples/test_flux_preview_steps.R |only sd2R-0.2.1/sd2R/inst/examples/test_flux_t5q3.R |only sd2R-0.2.1/sd2R/inst/examples/test_generate_flux.R | 151 sd2R-0.2.1/sd2R/inst/examples/test_generate_flux2.R |only sd2R-0.2.1/sd2R/inst/examples/test_generate_flux2_kaggle.R |only sd2R-0.2.1/sd2R/inst/examples/test_generate_flux_quick.R |only sd2R-0.2.1/sd2R/inst/examples/test_generate_flux_single.R |only sd2R-0.2.1/sd2R/inst/examples/test_inpaint_flux.R |only sd2R-0.2.1/sd2R/inst/examples/test_inpaint_flux2.R |only sd2R-0.2.1/sd2R/inst/examples/test_inpaint_quick.R |only sd2R-0.2.1/sd2R/inst/examples/test_meta_backend.cpp |only sd2R-0.2.1/sd2R/inst/examples/test_sampling_profile.R |only sd2R-0.2.1/sd2R/inst/examples/test_t5_profile.R |only sd2R-0.2.1/sd2R/inst/examples/test_vae_f16.R |only sd2R-0.2.1/sd2R/inst/examples/test_vk_upload_debug.R |only sd2R-0.2.1/sd2R/inst/examples/test_vram_roundtrip.R |only sd2R-0.2.1/sd2R/inst/shiny/sd2R_app/app.R | 865 + sd2R-0.2.1/sd2R/man/PREVIEW.Rd |only sd2R-0.2.1/sd2R/man/SAMPLE_METHOD.Rd | 2 sd2R-0.2.1/sd2R/man/SCHEDULER.Rd | 2 sd2R-0.2.1/sd2R/man/SD_TYPE.Rd | 2 sd2R-0.2.1/sd2R/man/dot-detect_model_type_config.Rd |only sd2R-0.2.1/sd2R/man/dot-detect_model_type_gguf.Rd |only sd2R-0.2.1/sd2R/man/dot-estimate_vae_vram.Rd | 12 sd2R-0.2.1/sd2R/man/dot-guess_model_type.Rd | 2 sd2R-0.2.1/sd2R/man/dot-native_latent_tile_size.Rd | 2 sd2R-0.2.1/sd2R/man/dot-native_tile_size.Rd | 2 sd2R-0.2.1/sd2R/man/dot-resolve_model_type.Rd |only sd2R-0.2.1/sd2R/man/dot-sd_generate_plan.Rd |only sd2R-0.2.1/sd2R/man/sd_ctx.Rd | 69 sd2R-0.2.1/sd2R/man/sd_decode_latent.Rd |only sd2R-0.2.1/sd2R/man/sd_default_params.Rd |only sd2R-0.2.1/sd2R/man/sd_denoise_step.Rd |only sd2R-0.2.1/sd2R/man/sd_destroy_context.Rd |only sd2R-0.2.1/sd2R/man/sd_download_model.Rd |only sd2R-0.2.1/sd2R/man/sd_encode_image.Rd |only sd2R-0.2.1/sd2R/man/sd_encode_text.Rd |only sd2R-0.2.1/sd2R/man/sd_generate.Rd | 29 sd2R-0.2.1/sd2R/man/sd_generate_multi_gpu.Rd | 3 sd2R-0.2.1/sd2R/man/sd_generate_multiref.Rd |only sd2R-0.2.1/sd2R/man/sd_highres_fix.Rd | 5 sd2R-0.2.1/sd2R/man/sd_img2img.Rd | 12 sd2R-0.2.1/sd2R/man/sd_img2img_tiled.Rd | 5 sd2R-0.2.1/sd2R/man/sd_inverse_noise_scale.Rd |only sd2R-0.2.1/sd2R/man/sd_load_mask.Rd |only sd2R-0.2.1/sd2R/man/sd_load_model.Rd | 10 sd2R-0.2.1/sd2R/man/sd_noise_scale.Rd |only sd2R-0.2.1/sd2R/man/sd_preview_start.Rd |only sd2R-0.2.1/sd2R/man/sd_preview_stop.Rd |only sd2R-0.2.1/sd2R/man/sd_read_preview.Rd |only sd2R-0.2.1/sd2R/man/sd_register_model.Rd | 2 sd2R-0.2.1/sd2R/man/sd_sample.Rd |only sd2R-0.2.1/sd2R/man/sd_sample_stepwise.Rd |only sd2R-0.2.1/sd2R/man/sd_sampler_sigmas.Rd |only sd2R-0.2.1/sd2R/man/sd_sampler_window.Rd |only sd2R-0.2.1/sd2R/man/sd_supports_ref_images.Rd |only sd2R-0.2.1/sd2R/man/sd_txt2img.Rd | 5 sd2R-0.2.1/sd2R/man/sd_txt2img_tiled.Rd | 5 sd2R-0.2.1/sd2R/src/Makevars.in | 56 sd2R-0.2.1/sd2R/src/Makevars.win.in | 70 sd2R-0.2.1/sd2R/src/RcppExports.cpp | 233 sd2R-0.2.1/sd2R/src/sd/anima.hpp |only sd2R-0.2.1/sd2R/src/sd/auto_encoder_kl.hpp |only sd2R-0.2.1/sd2R/src/sd/cache_dit.hpp | 133 sd2R-0.2.1/sd2R/src/sd/clip.hpp | 606 - sd2R-0.2.1/sd2R/src/sd/common_block.hpp |only sd2R-0.2.1/sd2R/src/sd/common_dit.hpp |only sd2R-0.2.1/sd2R/src/sd/condition_cache_utils.hpp |only sd2R-0.2.1/sd2R/src/sd/conditioner.hpp | 2047 ++- sd2R-0.2.1/sd2R/src/sd/control.hpp | 161 sd2R-0.2.1/sd2R/src/sd/convert.cpp |only sd2R-0.2.1/sd2R/src/sd/denoiser.hpp | 2179 ++-- sd2R-0.2.1/sd2R/src/sd/diffusion_model.hpp | 531 sd2R-0.2.1/sd2R/src/sd/easycache.hpp | 70 sd2R-0.2.1/sd2R/src/sd/ernie_image.hpp |only sd2R-0.2.1/sd2R/src/sd/esrgan.hpp | 51 sd2R-0.2.1/sd2R/src/sd/flux.hpp | 540 sd2R-0.2.1/sd2R/src/sd/ggml_extend.hpp | 2877 ++++- sd2R-0.2.1/sd2R/src/sd/ggml_extend_backend.cpp |only sd2R-0.2.1/sd2R/src/sd/ggml_extend_backend.h |only sd2R-0.2.1/sd2R/src/sd/ggml_graph_cut.cpp |only sd2R-0.2.1/sd2R/src/sd/ggml_graph_cut.h |only sd2R-0.2.1/sd2R/src/sd/guidance.cpp |only sd2R-0.2.1/sd2R/src/sd/guidance.h |only sd2R-0.2.1/sd2R/src/sd/hidream_o1.hpp |only sd2R-0.2.1/sd2R/src/sd/latent-preview.h | 202 sd2R-0.2.1/sd2R/src/sd/layer_registry.cpp |only sd2R-0.2.1/sd2R/src/sd/layer_registry.h |only sd2R-0.2.1/sd2R/src/sd/lens.hpp |only sd2R-0.2.1/sd2R/src/sd/llm.hpp | 2255 ++-- sd2R-0.2.1/sd2R/src/sd/lora.hpp | 228 sd2R-0.2.1/sd2R/src/sd/ltx_audio_vae.h |only sd2R-0.2.1/sd2R/src/sd/ltx_latent_upscaler.hpp |only sd2R-0.2.1/sd2R/src/sd/ltx_vae.hpp |only sd2R-0.2.1/sd2R/src/sd/ltxv.hpp | 2085 +++ sd2R-0.2.1/sd2R/src/sd/mmdit.hpp | 288 sd2R-0.2.1/sd2R/src/sd/model.cpp | 1334 -- sd2R-0.2.1/sd2R/src/sd/model.h | 226 sd2R-0.2.1/sd2R/src/sd/model_io |only sd2R-0.2.1/sd2R/src/sd/ordered_map.hpp | 2 sd2R-0.2.1/sd2R/src/sd/pid.hpp |only sd2R-0.2.1/sd2R/src/sd/pmid.hpp | 248 sd2R-0.2.1/sd2R/src/sd/preprocessing.hpp | 414 sd2R-0.2.1/sd2R/src/sd/qwen_image.hpp | 286 sd2R-0.2.1/sd2R/src/sd/rope.hpp | 295 sd2R-0.2.1/sd2R/src/sd/sample-cache.cpp |only sd2R-0.2.1/sd2R/src/sd/sample-cache.h |only sd2R-0.2.1/sd2R/src/sd/sd2r_meta_backend.hpp |only sd2R-0.2.1/sd2R/src/sd/spectrum.hpp |only sd2R-0.2.1/sd2R/src/sd/stable-diffusion.cpp | 7046 ++++++++----- sd2R-0.2.1/sd2R/src/sd/stable-diffusion.h | 238 sd2R-0.2.1/sd2R/src/sd/t5.hpp | 633 - sd2R-0.2.1/sd2R/src/sd/tae.hpp | 346 sd2R-0.2.1/sd2R/src/sd/tensor.hpp |only sd2R-0.2.1/sd2R/src/sd/tensor_ggml.hpp |only sd2R-0.2.1/sd2R/src/sd/tokenizers |only sd2R-0.2.1/sd2R/src/sd/ucache.hpp | 123 sd2R-0.2.1/sd2R/src/sd/unet.hpp | 214 sd2R-0.2.1/sd2R/src/sd/upscaler.cpp | 239 sd2R-0.2.1/sd2R/src/sd/upscaler.h |only sd2R-0.2.1/sd2R/src/sd/util.cpp | 828 + sd2R-0.2.1/sd2R/src/sd/util.h | 39 sd2R-0.2.1/sd2R/src/sd/vae.hpp | 936 - sd2R-0.2.1/sd2R/src/sd/wan.hpp | 658 - sd2R-0.2.1/sd2R/src/sd/z_image.hpp | 288 sd2R-0.2.1/sd2R/src/sd2R_interface.cpp | 557 - sd2R-0.2.1/sd2R/tests/testthat.R | 35 sd2R-0.2.1/sd2R/tests/testthat/_problems |only sd2R-0.2.1/sd2R/tests/testthat/test-app.R | 9 sd2R-0.2.1/sd2R/tests/testthat/test-full-coverage.R | 2 sd2R-0.2.1/sd2R/tests/testthat/test-generate-plan.R |only sd2R-0.2.1/sd2R/tests/testthat/test-lowlevel.R |only sd2R-0.2.1/sd2R/tests/testthat/test-mask.R |only sd2R-0.2.1/sd2R/tests/testthat/test-params.R |only sd2R-0.2.1/sd2R/tests/testthat/test-preview.R |only sd2R-0.2.1/sd2R/tests/testthat/test-utils.R | 4 sd2R-0.2.1/sd2R/tests/testthat/test-vae-tiling.R | 10 sd2R-0.2.1/sd2R/tests/testthat/test-vram-manager.R |only 167 files changed, 20417 insertions(+), 12118 deletions(-)
Title: Creation of Mock Observational Medical Outcomes Partnership
Common Data Model
Description: Creates mock data for testing and package development for the
Observational Medical Outcomes Partnership common data model. The
package offers functions crafted with pipeline-friendly
implementation, enabling users to effortlessly include only the
necessary tables for their testing needs.
Author: Mike Du [aut, cre] ,
Marti Catala [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Mike Du <mike.du@ndorms.ox.ac.uk>
Diff between omock versions 0.6.2 dated 2026-03-23 and 0.7.0 dated 2026-06-19
omock-0.6.2/omock/tests/testthat/test-mockCondtitionOccurrence.R |only omock-0.6.2/omock/vignettes/a01_Creating_synthetic_clinical_tables.R |only omock-0.6.2/omock/vignettes/a01_Creating_synthetic_clinical_tables.html |only omock-0.6.2/omock/vignettes/a02_Creating_synthetic_cohorts.R |only omock-0.6.2/omock/vignettes/a02_Creating_synthetic_cohorts.html |only omock-0.6.2/omock/vignettes/a03_Creating_a_synthetic_vocabulary.R |only omock-0.6.2/omock/vignettes/a03_Creating_a_synthetic_vocabulary.html |only omock-0.6.2/omock/vignettes/a04_Building_a_bespoke_mock_cdm.R |only omock-0.6.2/omock/vignettes/a04_Building_a_bespoke_mock_cdm.html |only omock-0.7.0/omock/DESCRIPTION | 8 omock-0.7.0/omock/MD5 | 126 +-- omock-0.7.0/omock/NAMESPACE | 1 omock-0.7.0/omock/NEWS.md | 148 ++-- omock-0.7.0/omock/R/changeCdmVersion.R | 292 ++++---- omock-0.7.0/omock/R/mockCdmFromTables.R | 60 + omock-0.7.0/omock/R/mockCdmReference.R | 16 omock-0.7.0/omock/R/mockCohort.R | 36 omock-0.7.0/omock/R/mockConcept.R | 44 - omock-0.7.0/omock/R/mockConditionOccurrence.R | 74 -- omock-0.7.0/omock/R/mockDatasets.R | 164 ++-- omock-0.7.0/omock/R/mockDeath.R | 19 omock-0.7.0/omock/R/mockDrugExposure.R | 14 omock-0.7.0/omock/R/mockMeasurement.R | 27 omock-0.7.0/omock/R/mockObservation.R | 14 omock-0.7.0/omock/R/mockObservationPeriod.R | 111 +-- omock-0.7.0/omock/R/mockPerson.R | 12 omock-0.7.0/omock/R/mockProcedureOccurrence.R | 20 omock-0.7.0/omock/R/mockVisitOccurrence.R | 7 omock-0.7.0/omock/R/mockVocabulary.R | 29 omock-0.7.0/omock/R/mockVocabularySet.R | 32 omock-0.7.0/omock/R/sysdata.rda |binary omock-0.7.0/omock/R/vocabularySubset.R |only omock-0.7.0/omock/README.md | 8 omock-0.7.0/omock/build/vignette.rds |binary omock-0.7.0/omock/data/mockDatasets.rda |binary omock-0.7.0/omock/inst/doc/mock_from_tables.html | 43 - omock-0.7.0/omock/inst/doc/subset_concepts.R |only omock-0.7.0/omock/inst/doc/subset_concepts.Rmd |only omock-0.7.0/omock/inst/doc/subset_concepts.html |only omock-0.7.0/omock/inst/doc/synthetic_clinical_tables.html | 14 omock-0.7.0/omock/inst/doc/synthetic_datasets.html | 141 +-- omock-0.7.0/omock/man/downloadMockDataset.Rd | 3 omock-0.7.0/omock/man/isMockDatasetDownloaded.Rd | 3 omock-0.7.0/omock/man/mockCdmFromDataset.Rd | 13 omock-0.7.0/omock/man/mockCdmFromTables.Rd | 10 omock-0.7.0/omock/man/mockCdmReference.Rd | 14 omock-0.7.0/omock/man/mockCohort.Rd | 12 omock-0.7.0/omock/man/mockConcepts.Rd | 24 omock-0.7.0/omock/man/mockConditionOccurrence.Rd | 29 omock-0.7.0/omock/man/mockDeath.Rd | 17 omock-0.7.0/omock/man/mockDrugExposure.Rd | 12 omock-0.7.0/omock/man/mockMeasurement.Rd | 12 omock-0.7.0/omock/man/mockObservation.Rd | 12 omock-0.7.0/omock/man/mockObservationPeriod.Rd | 11 omock-0.7.0/omock/man/mockPerson.Rd | 12 omock-0.7.0/omock/man/mockProcedureOccurrence.Rd | 18 omock-0.7.0/omock/man/mockVisitOccurrence.Rd | 7 omock-0.7.0/omock/man/mockVocabularySet.Rd | 24 omock-0.7.0/omock/man/mockVocabularyTables.Rd | 24 omock-0.7.0/omock/man/subsetVocabularyTables.Rd |only omock-0.7.0/omock/tests/testthat/test-changeCdmVersion.R | 60 + omock-0.7.0/omock/tests/testthat/test-mockCdmFromTables.R | 63 - omock-0.7.0/omock/tests/testthat/test-mockCdmReference.R | 11 omock-0.7.0/omock/tests/testthat/test-mockCohort.R | 31 omock-0.7.0/omock/tests/testthat/test-mockConcepts.R | 34 omock-0.7.0/omock/tests/testthat/test-mockConditionOccurrence.R |only omock-0.7.0/omock/tests/testthat/test-mockDatasets.R | 75 +- omock-0.7.0/omock/tests/testthat/test-mockMeasurement.R | 27 omock-0.7.0/omock/tests/testthat/test-mockObservationPeriod.R | 11 omock-0.7.0/omock/tests/testthat/test-mockVocabularySet.R | 17 omock-0.7.0/omock/tests/testthat/test-mockVocabularyTables.R | 362 +++++++++- omock-0.7.0/omock/vignettes/subset_concepts.Rmd |only 72 files changed, 1520 insertions(+), 888 deletions(-)
Title: Representation for Glycan Compositions and Structures
Description: Computational representations of glycan compositions and structures,
including details such as linkages, anomers, and substituents. Supports varying
levels of monosaccharide specificity (e.g., "Hex" or "Gal") and ambiguous linkages.
Provides robust parsing and generation of IUPAC-condensed structure strings.
Optimized for vectorized operations on glycan structures, with efficient handling
of duplications. As the cornerstone of the glycoverse ecosystem, this package
delivers the foundational data structures that power glycomics and glycoproteomics
analysis workflows.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glyrepr versions 0.12.0 dated 2026-05-14 and 0.12.1 dated 2026-06-19
DESCRIPTION | 8 MD5 | 22 - NEWS.md | 9 R/reorder-graph.R | 20 - R/structure-to-iupac.R | 232 ++++++------- R/structure.R | 82 ++-- README.md | 20 - build/vignette.rds |binary inst/doc/glycan-graph.html | 321 +++++++++++------- inst/doc/glyrepr.html | 778 +++++++++++++++++++++++++-------------------- inst/doc/smap.html | 618 +++++++++++++++++++---------------- man/glyrepr-package.Rd | 5 12 files changed, 1172 insertions(+), 943 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.5.2 dated 2026-04-13 and 1.5.4 dated 2026-06-19
DESCRIPTION | 19 MD5 | 126 +- NAMESPACE | 6 NEWS.md | 56 + R/Driver.R | 29 R/Result.R | 44 R/backend-dbplyr__duckdb_connection.R | 10 R/convert.R | 21 R/cpp11.R | 12 R/cran-guard.R |only R/dbAppendTable__duckdb_connection.R | 37 R/dbBind__duckdb_result_arrow.R |only R/dbClearResult__duckdb_result_arrow.R |only R/dbColumnInfo__duckdb_result_arrow.R |only R/dbConnect__duckdb_driver.R | 15 R/dbDataType__duckdb_driver.R | 22 R/dbFetchArrow__duckdb_result_arrow.R |only R/dbGetRowCount__duckdb_result_arrow.R |only R/dbGetRowsAffected__duckdb_result_arrow.R |only R/dbGetStatement__duckdb_result_arrow.R |only R/dbHasCompleted__duckdb_result_arrow.R |only R/dbIsValid__duckdb_result_arrow.R |only R/dbSendQueryArrow__duckdb_connection_character.R |only R/dbWriteTable__duckdb_connection_character_data.frame.R | 30 R/extensions.R | 297 +++++- R/package.R | 8 R/register.R | 2 R/relational.R | 33 R/rethrow-gen.R | 24 R/show__duckdb_result_arrow.R |only R/sql.R | 4 R/version.R | 2 R/zzz.R | 9 man/default_conn.Rd | 2 man/duckdb.Rd | 15 man/duckdb_connection-class.Rd | 5 man/duckdb_consolidate_secrets.Rd |only man/duckdb_register.Rd | 2 man/duckdb_result_arrow-class.Rd |only man/sql_query.Rd | 2 src/convert.cpp | 18 src/cpp11.cpp | 25 src/database.cpp | 4 src/duckdb.tar.xz |binary src/include/convert.hpp | 13 src/include/rapi.hpp | 25 src/include/reltoaltrep.hpp | 1 src/include/sources.mk | 2 src/include/typesr.hpp | 4 src/register.cpp | 43 src/relational.cpp | 25 src/reltoaltrep.cpp | 22 src/scan.cpp | 152 +++ src/statement.cpp | 118 ++ src/transform.cpp | 64 + src/types.cpp | 2 src/utils.cpp | 79 - tests/testthat.R | 46 tests/testthat/_snaps/map.md |only tests/testthat/_snaps/secret_directory.md |only tests/testthat/_snaps/types.md | 12 tests/testthat/data/time_tz.parquet |only tests/testthat/helper-skip.R | 10 tests/testthat/test-backend-dbplyr__duckdb_connection.R | 58 + tests/testthat/test-dbBindArrow.R |only tests/testthat/test-dbFetchArrow.R |only tests/testthat/test-dbSendQueryArrow.R |only tests/testthat/test-extension_path.R | 8 tests/testthat/test-map.R | 727 +++++++++++++++ tests/testthat/test-parquet.R | 21 tests/testthat/test-relational.R | 166 +++ tests/testthat/test-secret_directory.R |only tests/testthat/test-timestamp.R | 18 tests/testthat/test-types.R | 1 tests/testthat/test-variant.R |only 75 files changed, 2267 insertions(+), 229 deletions(-)
Title: Access, Retrieve, and Work with Canadian Census Data and
Geography
Description: Integrated, convenient, and uniform access to Canadian
Census data and geography retrieved using the 'CensusMapper' API. This package produces analysis-ready
tidy data frames and spatial data in multiple formats, as well as convenience functions
for working with Census variables, variable hierarchies, and region selection. API
keys are freely available with free registration at <https://censusmapper.ca/api>.
Census data and boundary geometries are reproduced and distributed on an "as
is" basis with the permission of Statistics Canada (Statistics Canada 1996; 2001; 2006;
2011; 2016; 2021).
Author: Jens von Bergmann [aut] ,
Dmitry Shkolnik [aut, cre] ,
Aaron Jacobs [aut]
Maintainer: Dmitry Shkolnik <shkolnikd@gmail.com>
Diff between cancensus versions 0.6.0 dated 2026-04-14 and 0.6.1 dated 2026-06-19
DESCRIPTION | 8 MD5 | 50 ++-- NEWS.md | 29 ++ R/cancensus.R | 44 ---- R/cancensus_cache.R | 6 R/census_regions.R | 19 + R/census_vectors.R | 77 +++---- R/geographies.R | 9 R/helpers.R | 50 +++- R/recalled_data.R | 11 - R/user_settings.R | 6 R/vector_discovery.R | 62 ++++- R/vector_viz.R | 17 + R/wds.R | 17 + README.md | 12 - inst/doc/Making_maps_with_cancensus.html | 341 ++++++++++++------------------- inst/doc/Taxfiler_Data.Rmd | 2 inst/doc/Taxfiler_Data.html | 50 ++-- inst/doc/cancensus.Rmd | 2 inst/doc/cancensus.html | 56 +++-- inst/doc/data_discovery.html | 69 +++--- inst/doc/intersecting_geometries.html | 6 man/explore_census_regions.Rd | 2 man/explore_census_vectors.Rd | 4 vignettes/Taxfiler_Data.Rmd | 2 vignettes/cancensus.Rmd | 2 26 files changed, 495 insertions(+), 458 deletions(-)
Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] ,
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brueggemann [ctb] ,
Christophe Dervieux [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.58 dated 2026-06-01 and 0.59 dated 2026-06-19
xfun-0.58/xfun/tests/test-ci.R |only xfun-0.58/xfun/tests/test-cran.R |only xfun-0.59/xfun/DESCRIPTION | 6 - xfun-0.59/xfun/MD5 | 43 +++++----- xfun-0.59/xfun/NAMESPACE | 1 xfun-0.59/xfun/R/command.R | 27 +++--- xfun-0.59/xfun/R/github.R | 105 ++++++++++++++++++++++--- xfun-0.59/xfun/R/httpd.R | 4 xfun-0.59/xfun/R/json.R | 1 xfun-0.59/xfun/R/markdown.R | 22 +++-- xfun-0.59/xfun/R/revcheck.R | 8 - xfun-0.59/xfun/R/yaml.R | 2 xfun-0.59/xfun/inst/doc/xfun.html | 8 - xfun-0.59/xfun/man/embed_file.Rd | 3 xfun-0.59/xfun/man/post_release.Rd |only xfun-0.59/xfun/man/system3.Rd | 19 ++-- xfun-0.59/xfun/tests/test-all.R |only xfun-0.59/xfun/tests/test-ci/test-session.R |only xfun-0.59/xfun/tests/test-cran/test-cache.R | 53 ++++++++++++ xfun-0.59/xfun/tests/test-cran/test-github.R |only xfun-0.59/xfun/tests/test-cran/test-json.R | 25 +++++ xfun-0.59/xfun/tests/test-cran/test-markdown.R | 8 + xfun-0.59/xfun/tests/test-cran/test-session.R |only xfun-0.59/xfun/tests/test-cran/test-string.R | 40 +++++++++ xfun-0.59/xfun/tests/test-cran/test-utils.R | 42 ++++++++++ xfun-0.59/xfun/tests/test-cran/test-yaml.R | 18 ++++ 26 files changed, 357 insertions(+), 78 deletions(-)
Title: Run Code 'With' Temporarily Modified Global State
Description: A set of functions to run code 'with' safely and temporarily
modified global state. Many of these functions were originally a part
of the 'devtools' package, this provides a simple package with limited
dependencies to provide access to these functions.
Author: Jim Hester [aut],
Lionel Henry [aut, cre],
Kirill Mueller [aut],
Kevin Ushey [aut],
Hadley Wickham [aut],
Winston Chang [aut],
Jennifer Bryan [ctb],
Richard Cotton [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between withr versions 3.0.2 dated 2024-10-28 and 3.0.3 dated 2026-06-19
DESCRIPTION | 6 +- MD5 | 54 ++++++++++++------------ NEWS.md | 22 ++++++++++ R/collate.R | 4 - R/connection.R | 5 +- R/db.R | 4 + R/devices.R | 2 R/env.R | 8 ++- R/file.R | 1 R/local_.R | 16 ++++--- R/locale.R | 4 - R/makevars.R | 39 +++++++++++++---- R/namespace.R | 89 +++++++++++++++++++++++++++++++---------- R/seed.R | 38 +++++++++++------ R/sink.R | 12 +++-- R/tempfile.R | 69 ++++++++++++++++++++++++------- R/timezone.R | 24 +++++++---- R/utils.R | 31 ++++++++------ R/with.R | 23 +++++----- R/with_.R | 22 +++++----- R/wrap.R | 14 +++--- build/vignette.rds |binary inst/doc/withr.R | 38 ++++++++--------- inst/doc/withr.Rmd | 2 inst/doc/withr.html | 7 +-- tests/testthat/test-language.R | 11 ++++- tests/testthat/test-seed.R | 24 +++++++++++ vignettes/withr.Rmd | 2 28 files changed, 387 insertions(+), 184 deletions(-)
Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries.
'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting,
model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre],
Tom Carruthers [aut],
Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between SAMtool versions 1.9.1 dated 2026-01-15 and 1.9.2 dated 2026-06-19
DESCRIPTION | 8 +- MD5 | 52 ++++++++-------- NAMESPACE | 1 NEWS.md | 8 ++ R/RCM2MOM.R | 3 R/RCM_assess.R | 18 +++++ R/RCM_est.R | 4 - R/RCM_rmd.R | 64 ++++++++++---------- R/define_S4_class_RCModel.R | 8 +- R/define_S4_class_profile.R | 2 R/define_S4_class_retro.R | 5 + R/define_S4_generic_simulate.R | 4 - R/diagnostic.R | 2 R/report_DD_TMB.R | 6 - R/report_SCA.R | 12 +-- R/report_SP.R | 6 - R/report_auxiliary.R | 75 ++++++++++++------------ build/partial.rdb |binary inst/include/DD.hpp | 4 - inst/include/RCM.hpp | 127 +++++++++++++++++++++++++---------------- inst/include/SCA.hpp | 2 inst/include/SP.hpp | 2 inst/include/VPA.hpp | 2 inst/include/cDD.hpp | 4 - inst/include/functions.hpp | 4 - man/plot.retro.Rd | 4 - man/simulate.Rd | 6 - 27 files changed, 249 insertions(+), 184 deletions(-)
Title: Truncated Maximum Likelihood Fit and Robust Accelerated Failure
Time Regression for Gaussian and Log-Weibull Case
Description: R functions for the computation of the truncated maximum
likelihood and the robust accelerated failure time regression
for gaussian and log-Weibull case.
Author: Alfio Marazzi [aut],
Jean-Luc Muralti [aut],
Alex Randriamiharisoa [cre]
Maintainer: Alex Randriamiharisoa <exelami@gmail.com>
Diff between RobustAFT versions 1.4-7 dated 2023-08-21 and 1.4-10 dated 2026-06-19
DESCRIPTION | 29 ++++- MD5 | 10 - NAMESPACE | 1 man/RobustAFT-package.Rd | 6 - src/robaft.f | 238 +++++++++++++++++++++++------------------------ src/tmlest.f | 14 +- 6 files changed, 156 insertions(+), 142 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
functionality deliberately similar to Matlab. It is useful for algorithm development
directly in C++, or quick conversion of research code into production environments.
It provides efficient classes for vectors, matrices and cubes where dense and sparse
matrices are supported. Integer, floating point and complex numbers are supported.
A sophisticated expression evaluator (based on template meta-programming) automatically
combines several operations to increase speed and efficiency. Dynamic evaluation
automatically chooses optimal code paths based on detected matrix structures.
Matrix decompositions are provided through integration with LAPACK, or one of its
high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can
automatically use 'OpenMP' multi-threading (parallelisation) to speed up
computationally expensive operations [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 15.2.7-1 dated 2026-05-29 and 15.4.0-1 dated 2026-06-19
ChangeLog | 18 DESCRIPTION | 8 MD5 | 200 ++-- configure | 18 configure.ac | 2 inst/NEWS.Rd | 15 inst/include/armadillo | 2 inst/include/armadillo_bits/Col_bones.hpp | 10 inst/include/armadillo_bits/Col_meat.hpp | 77 - inst/include/armadillo_bits/CubeToMatOp_bones.hpp | 2 inst/include/armadillo_bits/Cube_bones.hpp | 2 inst/include/armadillo_bits/Cube_meat.hpp | 31 inst/include/armadillo_bits/GenCube_bones.hpp | 5 inst/include/armadillo_bits/Gen_bones.hpp | 2 inst/include/armadillo_bits/GlueCube_bones.hpp | 2 inst/include/armadillo_bits/Glue_bones.hpp | 2 inst/include/armadillo_bits/Mat_bones.hpp | 12 inst/include/armadillo_bits/Mat_meat.hpp | 217 ++++- inst/include/armadillo_bits/OpCube_bones.hpp | 2 inst/include/armadillo_bits/Op_bones.hpp | 2 inst/include/armadillo_bits/Proxy.hpp | 8 inst/include/armadillo_bits/Row_bones.hpp | 10 inst/include/armadillo_bits/Row_meat.hpp | 77 - inst/include/armadillo_bits/SpGlue_bones.hpp | 2 inst/include/armadillo_bits/SpMat_bones.hpp | 2 inst/include/armadillo_bits/SpOp_bones.hpp | 2 inst/include/armadillo_bits/SpSubview_bones.hpp | 6 inst/include/armadillo_bits/SpSubview_col_list_bones.hpp | 2 inst/include/armadillo_bits/SpToDGlue_bones.hpp | 2 inst/include/armadillo_bits/SpToDOp_bones.hpp | 2 inst/include/armadillo_bits/arma_forward.hpp | 9 inst/include/armadillo_bits/arma_version.hpp | 6 inst/include/armadillo_bits/auxlib_meat.hpp | 20 inst/include/armadillo_bits/diagview_bones.hpp | 2 inst/include/armadillo_bits/diskio_meat.hpp | 5 inst/include/armadillo_bits/eglue_core_meat.hpp | 50 - inst/include/armadillo_bits/fn_as_scalar.hpp | 4 inst/include/armadillo_bits/fn_conv_to.hpp | 334 ++++++-- inst/include/armadillo_bits/fn_find.hpp | 8 inst/include/armadillo_bits/fn_inv.hpp | 2 inst/include/armadillo_bits/fn_inv_sympd.hpp | 2 inst/include/armadillo_bits/fn_powext.hpp | 4 inst/include/armadillo_bits/fn_sylvester.hpp | 6 inst/include/armadillo_bits/fn_trimat.hpp | 12 inst/include/armadillo_bits/glue_atan2_meat.hpp | 4 inst/include/armadillo_bits/glue_cor_meat.hpp | 4 inst/include/armadillo_bits/glue_cov_meat.hpp | 4 inst/include/armadillo_bits/glue_max_meat.hpp | 36 inst/include/armadillo_bits/glue_min_meat.hpp | 36 inst/include/armadillo_bits/glue_powext_bones.hpp | 4 inst/include/armadillo_bits/glue_powext_meat.hpp | 4 inst/include/armadillo_bits/glue_times_meat.hpp | 8 inst/include/armadillo_bits/gmm_diag_meat.hpp | 28 inst/include/armadillo_bits/gmm_full_meat.hpp | 22 inst/include/armadillo_bits/mp_misc.hpp | 4 inst/include/armadillo_bits/mtGlueCube_bones.hpp | 2 inst/include/armadillo_bits/mtGlue_bones.hpp | 2 inst/include/armadillo_bits/mtOpCube_bones.hpp | 2 inst/include/armadillo_bits/mtOp_bones.hpp | 2 inst/include/armadillo_bits/mtSpGlue_bones.hpp | 2 inst/include/armadillo_bits/mtSpOp_bones.hpp | 2 inst/include/armadillo_bits/mtSpReduceOp_bones.hpp | 2 inst/include/armadillo_bits/op_clamp_meat.hpp | 4 inst/include/armadillo_bits/op_cor_meat.hpp | 8 inst/include/armadillo_bits/op_cov_meat.hpp | 8 inst/include/armadillo_bits/op_diagmat_meat.hpp | 4 inst/include/armadillo_bits/op_dot_meat.hpp | 4 inst/include/armadillo_bits/op_expmat_meat.hpp | 4 inst/include/armadillo_bits/op_find_aux_bones.hpp |only inst/include/armadillo_bits/op_find_aux_meat.hpp |only inst/include/armadillo_bits/op_find_bones.hpp | 8 inst/include/armadillo_bits/op_find_meat.hpp | 18 inst/include/armadillo_bits/op_flip_meat.hpp | 4 inst/include/armadillo_bits/op_htrans_meat.hpp | 2 inst/include/armadillo_bits/op_logmat_meat.hpp | 4 inst/include/armadillo_bits/op_princomp_meat.hpp | 4 inst/include/armadillo_bits/op_reshape_meat.hpp | 4 inst/include/armadillo_bits/op_resize_meat.hpp | 4 inst/include/armadillo_bits/op_reverse_meat.hpp | 4 inst/include/armadillo_bits/op_shuffle_meat.hpp | 4 inst/include/armadillo_bits/op_sort_meat.hpp | 4 inst/include/armadillo_bits/op_sqrtmat_meat.hpp | 4 inst/include/armadillo_bits/op_strans_meat.hpp | 2 inst/include/armadillo_bits/op_symmat_meat.hpp | 16 inst/include/armadillo_bits/op_trimat_meat.hpp | 10 inst/include/armadillo_bits/op_vectorise_meat.hpp | 4 inst/include/armadillo_bits/sp_auxlib_meat.hpp | 2 inst/include/armadillo_bits/spdiagview_bones.hpp | 2 inst/include/armadillo_bits/spdiagview_meat.hpp | 8 inst/include/armadillo_bits/strip.hpp | 42 + inst/include/armadillo_bits/subview_bones.hpp | 12 inst/include/armadillo_bits/subview_cube_bones.hpp | 2 inst/include/armadillo_bits/subview_cube_each_meat.hpp | 118 +- inst/include/armadillo_bits/subview_cube_meat.hpp | 9 inst/include/armadillo_bits/subview_cube_slices_bones.hpp | 2 inst/include/armadillo_bits/subview_each_meat.hpp | 12 inst/include/armadillo_bits/subview_elem1_bones.hpp | 29 inst/include/armadillo_bits/subview_elem1_meat.hpp | 571 ++++---------- inst/include/armadillo_bits/subview_elem2_bones.hpp | 32 inst/include/armadillo_bits/subview_elem2_meat.hpp | 303 ------- inst/include/armadillo_bits/subview_meat.hpp | 4 inst/include/armadillo_bits/unwrap.hpp | 93 +- 102 files changed, 1456 insertions(+), 1287 deletions(-)
Title: Utilities for Working with NEON Data
Description: NEON data packages can be accessed through the NEON Data Portal <https://www.neonscience.org>
or through the NEON Data API (see <https://data.neonscience.org/data-api> for documentation). Data delivered from
the Data Portal are provided as monthly zip files packaged within a parent zip file, while individual files
can be accessed from the API. This package provides tools that aid in discovering, downloading, and reformatting
data prior to use in analyses. This includes downloading data via the API, merging data tables by type, and
converting formats. For more information, see the readme file at <https://github.com/NEONScience/NEON-utilities>.
Author: Claire Lunch [aut, cre, ctb],
Christine Laney [aut, ctb],
Nathan Mietkiewicz [aut, ctb],
Eric Sokol [aut, ctb],
Kaelin Cawley [aut, ctb],
NEON [aut]
Maintainer: Claire Lunch <clunch@battelleecology.org>
Diff between neonUtilities versions 3.0.3 dated 2026-01-23 and 4.0.0 dated 2026-06-19
DESCRIPTION | 12 ++-- MD5 | 63 +++++++++++++---------- NAMESPACE | 2 NEWS.md | 10 +++ R/byEventSIM.R | 27 ++++------ R/byFileAOP.R | 18 ++++++ R/byTileAOP.R | 18 ++++++ R/datasetQuery.R | 116 +++----------------------------------------- R/findTablesByFormat.R | 5 + R/getCitation.R | 2 R/getEddyLog.R | 2 R/getHorVer.R | 2 R/getIssueLog.R | 2 R/getNeonDOI.R | 2 R/getProductInfo.R | 2 R/getProductSensors.R | 2 R/getTimeIndex.R | 2 R/getTitle.R | 2 R/loadByProduct.R | 18 ++++++ R/nu-global.R |only R/queryFiles.R | 54 ++++++++------------ R/schemaAllStringsDuck.R |only R/schemaFromVarDuck.R |only R/stackDataFilesArrow.R | 30 ++++++++--- R/stackDataFilesDuck.R |only R/sysdata.rda |binary R/tokenCheck.R | 2 R/zipsByProduct.R | 24 +++++++-- README.md | 6 ++ data/shared_aquatic.rda |binary data/table_types.rda |binary man/datasetQuery.Rd | 6 +- man/queryFiles.Rd | 2 man/schemaAllStringsDuck.Rd |only man/schemaFromVarDuck.Rd |only man/stackDataFilesDuck.Rd |only 36 files changed, 211 insertions(+), 220 deletions(-)
Title: Harrell Miscellaneous
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, simulation, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX and html code,
recoding variables, caching, simplified parallel computing, encrypting and decrypting data using a safe workflow, general moving window statistical estimation, and assistance in interpreting principal component analysis.
Author: Frank E Harrell Jr [aut, cre] ,
Cole Beck [ctb],
Charles Dupont [ctb]
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between Hmisc versions 5.2-5 dated 2026-01-09 and 5.2-6 dated 2026-06-19
DESCRIPTION | 12 ++--- MD5 | 52 ++++++++++++------------- NEWS | 16 ++++--- R/areg.s | 2 R/bpower.s | 2 R/bpplot.s | 2 R/confbar.s | 4 - R/drawPlot.s | 14 +++--- R/event.chart.s | 2 R/gbayes.s | 2 R/latexDotchart.s | 2 R/movStats.r | 43 ++++++++++----------- R/na.delete.s | 2 R/plotlyM.r | 2 R/qcrypt.r | 102 +++++++++++++++++++++++++++----------------------- R/rcspline.eval.s | 6 +- R/rcspline.plot.s | 2 R/rm.boot.s | 2 R/scat1d.s | 2 R/show.pch.s | 2 R/summary.formula.s | 4 - R/transace.s | 8 +-- R/wtd.stats.s | 2 inst/tests/latexpng.r | 2 man/meltData.Rd | 2 man/qcrypt.Rd | 10 ++-- man/rm.boot.Rd | 48 +++++++++++------------ 27 files changed, 181 insertions(+), 168 deletions(-)
Title: Additional Layout Algorithms for Network Visualizations
Description: Several new layout algorithms to visualize networks are provided which are not part of 'igraph'.
Most are based on the concept of stress majorization by Gansner et al. (2004) <doi:10.1007/978-3-540-31843-9_25>.
Some more specific algorithms allow the user to emphasize hidden group structures in networks or focus on specific nodes.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between graphlayouts versions 1.2.3 dated 2026-02-21 and 1.2.4 dated 2026-06-19
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/layout_stress.R | 6 +----- tests/testthat/test-stress_majorization.R | 30 ++++++++++++++++++++++++++++++ 5 files changed, 42 insertions(+), 12 deletions(-)
Title: Empirical Likelihood Ratio for Censored/Truncated Data
Description: Empirical likelihood ratio tests and confidence intervals for means/quantiles/hazards
from possibly censored and/or truncated data. In particular, the empirical likelihood
for the Kaplan-Meier/Nelson-Aalen estimator. Now does AFT regression too.
Author: Mai Zhou [aut, cre, cph],
Yifan Yang [aut],
Art Owen [aut]
Maintainer: Mai Zhou <maizhou@gmail.com>
Diff between emplik versions 1.3-2 dated 2024-12-06 and 1.3-3 dated 2026-06-19
DESCRIPTION | 6 +++--- MD5 | 20 +++++++++++--------- NAMESPACE | 2 +- R/WCY.R | 2 +- R/WKM.R | 37 ++++++++++++++++++------------------- R/el.cen.test.R | 2 +- R/el.cen.test2.R |only README | 1 + man/el.cen.EM2.Rd | 23 ++++++++++++++++++----- man/el.cen.test.Rd | 7 ++++--- man/el.cen.test2.Rd |only man/emplik-internal.Rd | 2 +- 12 files changed, 59 insertions(+), 43 deletions(-)