Title: 'ggplot2'-Based Tools for Visualising DNA Sequences and
Modifications
Description: Uses 'ggplot2' to visualise either (a) a single DNA/RNA sequence split across multiple lines, (b) multiple DNA/RNA sequences, each occupying a whole line, or (c) base modifications such as DNA methylation called by modified bases models in Dorado or Guppy. Functions starting with visualise_<>() are the main plotting functions, and functions starting with extract_and_sort_<>() are key helper functions for reading files and reformatting data. Source code is available at <https://github.com/ejade42/ggDNAvis>, a full non-expert user guide is available at <https://ejade42.github.io/ggDNAvis/>, and an interactive web-app version of the software is available at <https://ejade42.github.io/ggDNAvis/articles/interactive_app.html>.
Author: Evelyn Jade [aut, cre, cph]
Maintainer: Evelyn Jade <evelynjade42@gmail.com>
Diff between ggDNAvis versions 1.0.0 dated 2026-03-05 and 1.0.1 dated 2026-06-22
DESCRIPTION | 16 ++++++------- MD5 | 28 ++++++++++++------------ NAMESPACE | 2 - NEWS.md | 6 +++++ R/ggDNAvis-package.R | 3 -- build/partial.rdb |binary build/vignette.rds |binary man/ggDNAvis-package.Rd | 5 ++++ man/rasterise_matrix.Rd | 2 - man/visualise_many_sequences.Rd | 2 - man/visualise_methylation.Rd | 2 - man/visualise_single_sequence.Rd | 2 - tests/testthat/test-visualise_many_sequences.R | 3 ++ tests/testthat/test-visualise_methylation.R | 3 ++ tests/testthat/test-visualise_single_sequence.R | 3 ++ 15 files changed, 47 insertions(+), 30 deletions(-)
Title: A Software Development Kit for 'Nixtla''s 'TimeGPT'
Description: A Software Development Kit for working with 'Nixtla''s 'TimeGPT', a foundation
model for time series forecasting. 'API' is an acronym for 'application
programming interface'; this package allows users to interact with
'TimeGPT' via the 'API'. You can set and validate 'API' keys and generate forecasts
via 'API' calls. It is compatible with 'tsibble' and base R. For more details
visit <https://www.nixtla.io/docs>.
Author: Mariana Menchero [aut, cre] ,
Nixtla [cph]
Maintainer: Mariana Menchero <mariana@nixtla.io>
Diff between nixtlar versions 0.6.2 dated 2024-10-28 and 1.0.0 dated 2026-06-22
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| 67 nixtlar-1.0.0/nixtlar/R/nixtla_client_detect_anomalies.R | 13 nixtlar-1.0.0/nixtlar/R/nixtla_client_forecast.R | 135 nixtlar-1.0.0/nixtlar/R/nixtla_client_historic.R | 33 nixtlar-1.0.0/nixtlar/R/nixtla_client_plot.R | 4 nixtlar-1.0.0/nixtlar/R/nixtla_client_setup.R | 4 nixtlar-1.0.0/nixtlar/R/nixtla_set_api_key.R | 2 nixtlar-1.0.0/nixtlar/R/nixtla_validate_api_key.R | 9 nixtlar-1.0.0/nixtlar/R/validate_exogenous.R | 12 nixtlar-1.0.0/nixtlar/README.md | 94 nixtlar-1.0.0/nixtlar/build/vignette.rds |binary nixtlar-1.0.0/nixtlar/inst/doc/anomaly-detection.html | 27 nixtlar-1.0.0/nixtlar/inst/doc/azure-quickstart.R | 16 nixtlar-1.0.0/nixtlar/inst/doc/azure-quickstart.Rmd | 2 nixtlar-1.0.0/nixtlar/inst/doc/azure-quickstart.html | 35 nixtlar-1.0.0/nixtlar/inst/doc/cross-validation.html | 15 nixtlar-1.0.0/nixtlar/inst/doc/data-requirements.R | 12 nixtlar-1.0.0/nixtlar/inst/doc/data-requirements.Rmd | 2 nixtlar-1.0.0/nixtlar/inst/doc/data-requirements.html | 3 nixtlar-1.0.0/nixtlar/inst/doc/exogenous-variables.R | 25 nixtlar-1.0.0/nixtlar/inst/doc/exogenous-variables.Rmd | 73 nixtlar-1.0.0/nixtlar/inst/doc/exogenous-variables.html | 171 nixtlar-1.0.0/nixtlar/inst/doc/fine-tuning.R |only nixtlar-1.0.0/nixtlar/inst/doc/fine-tuning.Rmd |only nixtlar-1.0.0/nixtlar/inst/doc/fine-tuning.html |only nixtlar-1.0.0/nixtlar/inst/doc/get-started.R | 26 nixtlar-1.0.0/nixtlar/inst/doc/get-started.Rmd | 4 nixtlar-1.0.0/nixtlar/inst/doc/get-started.html | 31 nixtlar-1.0.0/nixtlar/inst/doc/historical-forecast.html | 29 nixtlar-1.0.0/nixtlar/inst/doc/long-horizon.html | 31 nixtlar-1.0.0/nixtlar/inst/doc/prediction-intervals.R | 8 nixtlar-1.0.0/nixtlar/inst/doc/prediction-intervals.html | 53 nixtlar-1.0.0/nixtlar/inst/doc/quantiles.R | 6 nixtlar-1.0.0/nixtlar/inst/doc/quantiles.html | 27 nixtlar-1.0.0/nixtlar/inst/doc/setting-up-your-api-key.R | 34 nixtlar-1.0.0/nixtlar/inst/doc/setting-up-your-api-key.Rmd | 2 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Title: Hierarchical Bayesian Aldrich-McKelvey Scaling via 'Stan'
Description: Perform hierarchical Bayesian Aldrich-McKelvey scaling using Hamiltonian Monte
Carlo via 'Stan'. Aldrich-McKelvey ('AM') scaling is a method for estimating the latent
positions of survey respondents and external objects on a common scale using positional survey
data. The hierarchical versions of the Bayesian 'AM' model included in this package outperform
other versions both in terms of yielding meaningful posterior distributions for respondent
positions and in terms of recovering true respondent positions in simulations. The package
contains functions for preparing data, fitting models, extracting estimates, plotting key
results, and comparing models using cross-validation. The original version of the default
model is described in Bølstad (2024) <doi:10.1017/pan.2023.18>.
Author: Joergen Boelstad [aut, cre]
Maintainer: Joergen Boelstad <jorgen.bolstad@stv.uio.no>
Diff between hbamr versions 2.4.6 dated 2026-04-28 and 2.4.7 dated 2026-06-22
DESCRIPTION | 10 +- MD5 | 46 ++++++------ NEWS.md | 14 ++- R/fbam.R | 2 R/get_est.R | 4 - R/hbam.R | 4 - R/hbam_cv.R | 2 R/hbamr-package.R | 2 R/prep_data.R | 7 - R/prep_data_cv.R | 4 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/hbamr.R | 4 - inst/doc/hbamr.Rmd | 28 +++---- inst/doc/hbamr.html | 70 +++++++++--------- man/fbam.Rd | 2 man/get_est.Rd | 2 man/hbam.Rd | 4 - man/hbam_cv.Rd | 2 man/hbamr-package.Rd | 2 man/prep_data.Rd | 4 - man/prep_data_cv.Rd | 4 - src/stanExports_omni.h | 185 +++++++++++++++++++++---------------------------- vignettes/hbamr.Rmd | 28 +++---- 24 files changed, 207 insertions(+), 223 deletions(-)
Title: Statistical Power, Sample Size, and Detectable Effect
Calculations
Description: Flexible and comprehensive functions for statistical power, minimum required
sample size, and minimum detectable effect calculations across a wide range of
commonly used hypothesis tests in psychological, biomedical, and social sciences.
Author: Metin Bulus [aut, cre, cph],
Sebastian Jentschke [aut, cph]
Maintainer: Metin Bulus <bulusmetin@gmail.com>
Diff between pwrss versions 1.0.0 dated 2025-09-16 and 1.2.0 dated 2026-06-22
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Title: BDEW Standard Load Profiles for Electricity and Gas
Description: Provides standard load profiles (SLPs) for electricity and gas
published by the German Association of Energy and Water Industries (BDEW
Bundesverband der Energie- und Wasserwirtschaft e.V.) in a tidy format. The
electricity profiles cover the 1999 profiles — households (H0), commercial
(G0–G6), and agriculture (L0–L2) — and the updated 2025 profiles (H25, G25,
L25, P25, S25), which additionally represent households with photovoltaic
systems and battery storage. An interface generates an electricity load
profile over a user-defined date range. A second interface generates daily
standard load profiles for gas using the synthetic 'SigLinDe' method. More
information on the data and methodology for electricity is described in
"Standardlastprofile Strom",
<https://www.bdew.de/energie/standardlastprofile-strom/>, and for gas in
"Standardlastprofile Gas",
<https://www.bdew.de/energie/standardlastprofile-gas/>.
Author: Markus Doering [aut, cre, cph]
Maintainer: Markus Doering <m4rkus.doering@gmail.com>
Diff between standardlastprofile versions 2.0.0 dated 2026-06-11 and 2.0.1 dated 2026-06-22
DESCRIPTION | 41 +++---- MD5 | 50 ++++----- NEWS.md | 18 +++ R/data.R | 4 R/plots.R | 5 R/siglinde.R | 37 +++++- R/slp_electricity.R | 6 - R/slp_gas.R | 32 +++-- R/slp_gas_kundenwert.R | 37 ++++-- R/slp_gas_reference.R | 15 +- R/utils.R | 14 +- README.md | 150 ++++++++++++--------------- man/figures/README-slp_gas_cities-1.png |binary man/figures/README-slp_gas_readme_plot-1.png |binary man/slp_electricity.Rd | 4 man/slp_electricity_profiles.Rd | 4 man/slp_gas.Rd | 19 +-- man/slp_gas_coefficients.Rd | 6 - man/slp_gas_kundenwert.Rd | 24 ++-- man/slp_gas_siglinde.Rd | 10 - man/slp_gas_weekday_factors.Rd | 6 - man/standardlastprofile-package.Rd | 2 tests/testthat/test-slp_gas.R | 14 ++ tests/testthat/test-slp_gas_kundenwert.R | 18 +++ tests/testthat/test-slp_gas_reference.R | 24 ++++ tests/testthat/test-slp_gas_siglinde.R | 94 ++++++++++++++++ 26 files changed, 414 insertions(+), 220 deletions(-)
More information about standardlastprofile at CRAN
Permanent link
Title: Multi-Stock Assessment
Description: Implementation of a next-generation, multi-stock age-structured fisheries assessment model.
'multiSA' is intended for use in mixed fisheries where stock composition can not be readily identified in
fishery data alone, e.g., from catch and age/length composition. Models can be fitted to genetic data,
e.g., stock composition of catches and close-kin pairs, with seasonal stock availability and movement.
Author: Quang Huynh [aut, cre]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between multiSA versions 0.2.0 dated 2026-05-22 and 0.3.0 dated 2026-06-22
DESCRIPTION | 14 MD5 | 62 - NAMESPACE | 12 NEWS.md | 14 R/calc_population.R | 872 ++++++++++++------------- R/check-data.R | 184 ++++- R/define-s4-class.R | 35 - R/jitter.R |only R/like.R | 76 +- R/make-parameters.R | 30 R/misc.R | 876 ++++++++++++------------- R/model.R | 258 ++++--- R/model_int.R | 1394 ++++++++++++++++++++--------------------- R/prior.R | 4 R/profile.R | 560 ++++++++-------- R/report-int-data.R | 1186 +++++++++++++++++----------------- R/report-int-state.R | 46 - R/report-rmd.R | 4 R/resid.R | 6 R/retrospective.R | 40 - R/rtmb-methods.R | 1 inst/include/MSAreport.Rmd | 4 inst/include/retrospective.Rmd | 4 man/Dfishery-class.Rd | 4 man/Dsurvey-class.Rd | 3 man/Dtag-class.Rd | 1 man/MSAdata-class.Rd | 8 man/do_jitter.Rd |only man/fit_MSA.Rd | 5 man/get_sdreport.Rd | 37 - man/optimize_RTMB.Rd | 16 man/profile.Rd | 37 - man/retrospective.Rd | 2 33 files changed, 3031 insertions(+), 2764 deletions(-)
Title: Convenience Functions for Education Data
Description: Collection of convenience functions to make working with
administrative records easier and more consistent. Includes functions to
clean strings, and identify cut points. Also includes three example data
sets of administrative education records for learning how to process records
with errors.
Author: Jason P. Becker [ctb],
Jared E. Knowles [aut, cre]
Maintainer: Jared E. Knowles <jared@civilytics.com>
Diff between eeptools versions 1.2.7 dated 2025-09-05 and 1.3.0 dated 2026-06-22
eeptools-1.2.7/eeptools/R/zzz.R |only eeptools-1.3.0/eeptools/DESCRIPTION | 10 eeptools-1.3.0/eeptools/MD5 | 99 eeptools-1.3.0/eeptools/NAMESPACE | 1 eeptools-1.3.0/eeptools/NEWS.md | 35 eeptools-1.3.0/eeptools/R/age_calc.R | 6 eeptools-1.3.0/eeptools/R/autoplot.lm.R | 23 eeptools-1.3.0/eeptools/R/cleanTex.R | 7 eeptools-1.3.0/eeptools/R/decomma.R | 6 eeptools-1.3.0/eeptools/R/defac.R | 10 eeptools-1.3.0/eeptools/R/destring.R | 10 eeptools-1.3.0/eeptools/R/eeptools-package.r | 4 eeptools-1.3.0/eeptools/R/eeptools.R | 3 eeptools-1.3.0/eeptools/R/lags.R | 7 eeptools-1.3.0/eeptools/R/leading_zero.R | 10 eeptools-1.3.0/eeptools/R/modsims.R | 9 eeptools-1.3.0/eeptools/R/moves_calc.R | 4 eeptools-1.3.0/eeptools/R/proficiency_tools.R | 86 eeptools-1.3.0/eeptools/R/retained_calc.R | 9 eeptools-1.3.0/eeptools/R/theme_dpi.R | 149 - eeptools-1.3.0/eeptools/README.md | 611 ++--- eeptools-1.3.0/eeptools/build/vignette.rds |binary eeptools-1.3.0/eeptools/inst/doc/intro.R | 209 - eeptools-1.3.0/eeptools/inst/doc/intro.Rmd | 445 +-- eeptools-1.3.0/eeptools/inst/doc/intro.html | 1246 +++++------ eeptools-1.3.0/eeptools/man/age_calc.Rd | 6 eeptools-1.3.0/eeptools/man/autoplot.lm.Rd | 7 eeptools-1.3.0/eeptools/man/cleanTex.Rd | 7 eeptools-1.3.0/eeptools/man/crosstabplot.Rd | 7 eeptools-1.3.0/eeptools/man/crosstabs.Rd | 7 eeptools-1.3.0/eeptools/man/decomma.Rd | 6 eeptools-1.3.0/eeptools/man/defac.Rd | 6 eeptools-1.3.0/eeptools/man/eeptools.Rd | 3 eeptools-1.3.0/eeptools/man/gelmansim.Rd | 7 eeptools-1.3.0/eeptools/man/lag_data.Rd | 7 eeptools-1.3.0/eeptools/man/leading_zero.Rd | 10 eeptools-1.3.0/eeptools/man/makenum.Rd | 6 eeptools-1.3.0/eeptools/man/profpoly.Rd | 6 eeptools-1.3.0/eeptools/man/profpoly.data.Rd | 6 eeptools-1.3.0/eeptools/man/theme_dpi.Rd | 20 eeptools-1.3.0/eeptools/man/theme_dpi_map.Rd | 21 eeptools-1.3.0/eeptools/man/theme_dpi_map2.Rd | 21 eeptools-1.3.0/eeptools/man/theme_dpi_mapPNG.Rd | 21 eeptools-1.3.0/eeptools/tests/testthat/helper-deprecation.R |only eeptools-1.3.0/eeptools/tests/testthat/test-deprecated.R |only eeptools-1.3.0/eeptools/tests/testthat/test-edutils.R | 26 eeptools-1.3.0/eeptools/tests/testthat/test-gelmansim.R | 222 - eeptools-1.3.0/eeptools/tests/testthat/test-plots.R | 4 eeptools-1.3.0/eeptools/tests/testthat/test-utils.R | 385 +-- eeptools-1.3.0/eeptools/tools/readme/README-crossplot-1.png |binary eeptools-1.3.0/eeptools/tools/readme/README-lmautoplot-1.png |binary eeptools-1.3.0/eeptools/vignettes/intro.Rmd | 445 +-- 52 files changed, 2144 insertions(+), 2111 deletions(-)
Title: Enrichment Analysis Utilizing Active Subnetworks
Description: Enrichment analysis enables researchers to uncover mechanisms
underlying a phenotype. However, conventional methods for enrichment
analysis do not take into account protein-protein interaction information,
resulting in incomplete conclusions. 'pathfindR' is a tool for enrichment
analysis utilizing active subnetworks. The main function identifies active
subnetworks in a protein-protein interaction network using a user-provided
list of genes and associated p values. It then performs enrichment analyses
on the identified subnetworks, identifying enriched terms (i.e. pathways or,
more broadly, gene sets) that possibly underlie the phenotype of interest.
'pathfindR' also offers functionalities to cluster the enriched terms and
identify representative terms in each cluster, to score the enriched terms
per sample and to visualize analysis results. The enrichment, clustering and
other methods implemented in 'pathfindR' are described in detail in
Ulgen E, Ozisik O, Sezerman OU. 2019. 'pathfindR [...truncated...]
Author: Ege Ulgen [cre, cph] ,
Ozan Ozisik [aut]
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR versions 2.7.0 dated 2025-12-22 and 3.0.0 dated 2026-06-22
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pathfindR-3.0.0/pathfindR/tests/testthat/test-visualize-term-gene-graph.R |only pathfindR-3.0.0/pathfindR/tests/testthat/test-visualize-term-gene-heatmap.R |only pathfindR-3.0.0/pathfindR/tests/testthat/test-visualize-terms.R |only pathfindR-3.0.0/pathfindR/tests/testthat/test-visualize-upset-plot.R |only pathfindR-3.0.0/pathfindR/vignettes/intro_vignette.Rmd | 30 pathfindR-3.0.0/pathfindR/vignettes/visualization_vignette.Rmd | 60 155 files changed, 2487 insertions(+), 2250 deletions(-)
Title: Estimating Climate Analogue Areas
Description: Offers tools to identify the climate analogues of reference polygons and quantifies their transformation under future climate change scenarios. Approaches described in Mingarro and Lobo (2018) <doi:10.32800/abc.2018.41.0333> and Mingarro and Lobo (2022) <doi:10.1017/S037689292100014X>.
Author: Mario Mingarro [aut, cre] ,
Gabriel del Barrio [aut] ,
Jorge M. Lobo [aut]
Maintainer: Mario Mingarro <mario_mingarro@mncn.csic.es>
Diff between ClimaRep versions 1.0 dated 2025-10-22 and 1.1 dated 2026-06-22
DESCRIPTION | 20 ++-- MD5 | 24 ++--- R/mh_rep.R | 39 ++++----- R/mh_rep_ch.R | 82 ++++++++++++------- R/rep_overlay.R | 161 ++++++++++++++++++++++---------------- README.md | 74 ++++++++--------- man/ClimaRep-package.Rd | 10 +- man/mh_rep.Rd | 18 +--- man/mh_rep_ch.Rd | 45 +++++----- man/rep_overlay.Rd | 68 +++++++++------- tests/testthat/test-mh_rep.R | 6 - tests/testthat/test-mh_rep_ch.R | 5 - tests/testthat/test-rep_overlay.R | 7 - 13 files changed, 319 insertions(+), 240 deletions(-)
Title: Working with Dynamic Models for Agriculture and Environment
Description: R package accompanying the book Working with dynamic models for agriculture and environment, by Daniel Wallach (INRAE), David Makowski (INRAE), James W. Jones (U.of Florida), Francois Brun (ACTA), 2019.
Author: Francois Brun [aut, cre] ,
David Makowski [aut] ,
Daniel Wallach [aut] ,
James W. Jones [aut]
Maintainer: Francois Brun <francois.brun@acta.asso.fr>
This is a re-admission after prior archival of version 1.1 dated 2018-11-09
Diff between ZeBook versions 1.1 dated 2018-11-09 and 1.2 dated 2026-06-22
ZeBook-1.1/ZeBook/R/globals.r |only ZeBook-1.1/ZeBook/data/datalist |only ZeBook-1.1/ZeBook/man/ZeBook-package.Rd |only ZeBook-1.2/ZeBook/DESCRIPTION | 32 - ZeBook-1.2/ZeBook/MD5 | 225 ++++------ ZeBook-1.2/ZeBook/NAMESPACE | 172 ++++--- ZeBook-1.2/ZeBook/R/AIC.r | 16 ZeBook-1.2/ZeBook/R/ZeBook.r | 37 - ZeBook-1.2/ZeBook/R/carbon.model.r | 8 ZeBook-1.2/ZeBook/R/carcass.EMI.model.r | 43 - ZeBook-1.2/ZeBook/R/carcass.model.r | 40 - ZeBook-1.2/ZeBook/R/epirice.model.r | 25 - ZeBook-1.2/ZeBook/R/evaluation.criteria.r | 8 ZeBook-1.2/ZeBook/R/goodness.of.fit.r | 8 ZeBook-1.2/ZeBook/R/maize.data_EuropeEU.r | 12 ZeBook-1.2/ZeBook/R/maize.data_MetaModelling.r | 2 ZeBook-1.2/ZeBook/R/maize.model.r | 122 ++--- ZeBook-1.2/ZeBook/R/maize.muchow.model.r | 73 +-- ZeBook-1.2/ZeBook/R/population.age.model.r | 85 +-- ZeBook-1.2/ZeBook/R/sample.r | 2 ZeBook-1.2/ZeBook/R/watbal.model.r | 424 +++++++++---------- ZeBook-1.2/ZeBook/R/watbal.simobsdata.r | 2 ZeBook-1.2/ZeBook/R/weather_EuropeEU_data.r | 98 ++-- ZeBook-1.2/ZeBook/R/weather_FranceWest_data.r | 6 ZeBook-1.2/ZeBook/R/weather_GNS_data.r | 2 ZeBook-1.2/ZeBook/R/weather_SouthAsia_data.r | 8 ZeBook-1.2/ZeBook/R/zadoks.original.model.r | 2 ZeBook-1.2/ZeBook/demo/00Index | 14 ZeBook-1.2/ZeBook/demo/ch03Simulation.watbal.r | 2 ZeBook-1.2/ZeBook/man/AICf.Rd | 67 +-- ZeBook-1.2/ZeBook/man/Bean.Rd | 74 +-- ZeBook-1.2/ZeBook/man/Sunflower_Phomopsis.Rd | 38 - 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ZeBook-1.2/ZeBook/man/lactation.define.param.Rd | 40 - ZeBook-1.2/ZeBook/man/lactation.machine.model.Rd | 162 ++++--- ZeBook-1.2/ZeBook/man/lactation.machine.model2.Rd | 50 +- ZeBook-1.2/ZeBook/man/magarey.define.param.Rd | 42 - ZeBook-1.2/ZeBook/man/magarey.model.Rd | 60 +- ZeBook-1.2/ZeBook/man/magarey.model2.Rd | 38 - ZeBook-1.2/ZeBook/man/magarey.simule.Rd | 46 +- ZeBook-1.2/ZeBook/man/maize.RUEtemp.Rd | 54 +- ZeBook-1.2/ZeBook/man/maize.data_EuropeEU.Rd | 36 - ZeBook-1.2/ZeBook/man/maize.data_MetaModelling.Rd | 52 +- ZeBook-1.2/ZeBook/man/maize.define.param.Rd | 28 - ZeBook-1.2/ZeBook/man/maize.model.Rd | 116 ++--- ZeBook-1.2/ZeBook/man/maize.model2.Rd | 54 +- ZeBook-1.2/ZeBook/man/maize.muchow.graph.Rd | 46 +- ZeBook-1.2/ZeBook/man/maize.muchow.model.Rd | 136 +++--- ZeBook-1.2/ZeBook/man/maize.multisy.Rd | 51 +- ZeBook-1.2/ZeBook/man/maize.multisy240.Rd | 58 +- ZeBook-1.2/ZeBook/man/maize.simule.Rd | 50 +- ZeBook-1.2/ZeBook/man/maize.simule240.Rd | 62 +- ZeBook-1.2/ZeBook/man/maize.simule_multisy240.Rd | 67 +-- ZeBook-1.2/ZeBook/man/maize.weather.Rd | 43 - ZeBook-1.2/ZeBook/man/maize_cir.model.Rd | 71 +-- ZeBook-1.2/ZeBook/man/maize_cir_rue.model.Rd | 82 ++- ZeBook-1.2/ZeBook/man/maize_cir_rue_ear.model.Rd | 82 ++- ZeBook-1.2/ZeBook/man/mm.A.fct.Rd | 66 +- ZeBook-1.2/ZeBook/man/mm.FAS.fct.Rd | 60 +- ZeBook-1.2/ZeBook/man/mm.HI.fct.Rd | 64 +- ZeBook-1.2/ZeBook/man/mm.LN.fct.Rd | 64 +- ZeBook-1.2/ZeBook/man/param.rtriangle.Rd | 38 - ZeBook-1.2/ZeBook/man/param.runif.Rd | 38 - ZeBook-1.2/ZeBook/man/population.age.matrix.model.Rd | 137 +++--- ZeBook-1.2/ZeBook/man/population.age.model.Rd | 119 +++-- ZeBook-1.2/ZeBook/man/population.age.model.ode.Rd | 142 +++--- ZeBook-1.2/ZeBook/man/predator.prey.model.Rd | 83 ++- ZeBook-1.2/ZeBook/man/q.arg.fast.runif.Rd | 34 - ZeBook-1.2/ZeBook/man/seedweight.data.Rd | 38 - ZeBook-1.2/ZeBook/man/seedweight.model.Rd | 58 +- ZeBook-1.2/ZeBook/man/threshold.measures.Rd | 62 +- ZeBook-1.2/ZeBook/man/verhulst.model.Rd | 60 +- ZeBook-1.2/ZeBook/man/verhulst.update.Rd | 48 +- ZeBook-1.2/ZeBook/man/watbal.define.param.Rd | 28 - ZeBook-1.2/ZeBook/man/watbal.model.Rd | 50 +- ZeBook-1.2/ZeBook/man/watbal.model.arid.Rd | 66 +- ZeBook-1.2/ZeBook/man/watbal.simobsdata.Rd | 44 + ZeBook-1.2/ZeBook/man/watbal.update.Rd | 54 +- ZeBook-1.2/ZeBook/man/watbal.weather.Rd | 40 - ZeBook-1.2/ZeBook/man/weather_EuropeEU.Rd | 113 +++-- ZeBook-1.2/ZeBook/man/weather_FranceWest.Rd | 70 +-- ZeBook-1.2/ZeBook/man/weather_GNS.Rd | 48 +- ZeBook-1.2/ZeBook/man/weather_SouthAsia.Rd | 78 +-- ZeBook-1.2/ZeBook/man/weed.define.param.Rd | 28 - ZeBook-1.2/ZeBook/man/weed.model.Rd | 38 - ZeBook-1.2/ZeBook/man/weed.simule.Rd | 38 - ZeBook-1.2/ZeBook/man/weed.update.Rd | 62 +- ZeBook-1.2/ZeBook/man/zakoks.original.model.Rd | 117 ++--- 115 files changed, 3599 insertions(+), 3276 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that
cannot be directly estimated from the data). These tools can be used
to define objects for creating, simulating, or validating values for
such parameters.
Author: Max Kuhn [aut],
Hannah Frick [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between dials versions 1.4.3 dated 2026-04-11 and 1.4.4 dated 2026-06-22
DESCRIPTION | 8 +-- MD5 | 61 ++++++++++++++++------------- NAMESPACE | 22 ++++++++++ NEWS.md | 11 +++++ R/param_attention.R |only R/param_engine_catboost.R |only R/param_engine_ranger.R | 15 +++++-- R/param_network.R | 63 ++++++++++++++++++++++++++++++ R/param_resnet.R |only R/param_rln.R |only build/vignette.rds |binary man/activation.Rd | 5 -- man/attention-param.Rd |only man/calibration.Rd | 7 --- man/catboost_parameters.Rd |only man/conditional_min_criterion.Rd | 7 --- man/dials-package.Rd | 1 man/dropout.Rd | 19 +++++++++ man/initial_umap.Rd | 5 -- man/ordinal_link.Rd | 7 --- man/parameters.Rd | 2 man/prune_method.Rd | 5 -- man/ranger_parameters.Rd | 17 ++------ man/reexports.Rd | 2 man/regularization_method.Rd | 5 -- man/resnet-param.Rd |only man/rln-param.Rd |only man/scheduler-param.Rd | 5 -- man/summary_stat.Rd | 5 -- man/surv_dist.Rd | 5 -- man/survival_link.Rd | 5 -- man/token.Rd | 5 -- man/weight_func.Rd | 5 -- man/weight_scheme.Rd | 5 -- tests/testthat/test-param_engine_ranger.R |only tests/testthat/test-params.R | 21 ++++++++++ 36 files changed, 196 insertions(+), 122 deletions(-)
Title: Parse XML
Description: Bindings to 'libxml2' for working with XML data using a simple,
consistent interface based on 'XPath' expressions. Also supports XML schema
validation; for 'XSLT' transformations see the 'xslt' package.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Jeroen Ooms [aut, cre],
Posit Software, PBC [cph, fnd],
R Foundation [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between xml2 versions 1.5.2 dated 2026-01-17 and 1.6.0 dated 2026-06-22
xml2-1.5.2/xml2/R/zzz.R |only xml2-1.6.0/xml2/DESCRIPTION | 8 ++-- xml2-1.6.0/xml2/MD5 | 22 ++++++------ xml2-1.6.0/xml2/NEWS.md | 8 ++++ xml2-1.6.0/xml2/R/xml_modify.R | 42 +++++++++++++++-------- xml2-1.6.0/xml2/R/xml_parse.R | 10 +++-- xml2-1.6.0/xml2/build/partial.rdb |binary xml2-1.6.0/xml2/build/vignette.rds |binary xml2-1.6.0/xml2/inst/doc/modification.html | 12 +++--- xml2-1.6.0/xml2/man/xml_replace.Rd | 7 ++- xml2-1.6.0/xml2/src/xml2-win.def |only xml2-1.6.0/xml2/tests/testthat/test-xml_modify.R | 19 ++++++++++ xml2-1.6.0/xml2/tests/testthat/test-xml_parse.R | 8 ++++ 13 files changed, 96 insertions(+), 40 deletions(-)
Title: Probability Computations on Pedigrees
Description: An implementation of the Elston-Stewart algorithm for
calculating pedigree likelihoods given genetic marker data (Elston and
Stewart (1971) <doi:10.1159/000152448>). The standard algorithm is
extended to allow inbred founders. 'pedprobr' is part of the
'pedsuite', a collection of packages for pedigree analysis in R. In
particular, 'pedprobr' depends on 'pedtools' for pedigree
manipulations and 'pedmut' for mutation modelling. For more
information, see 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedprobr versions 1.0.1 dated 2025-05-07 and 1.1.0 dated 2026-06-22
DESCRIPTION | 10 MD5 | 47 ++- NEWS.md | 17 + R/genoCombinations.R | 11 R/informative.R | 2 R/likelihood.R | 199 +++++++++++----- R/likelihood2.R | 47 ++- R/lumpAlleles.R | 7 R/merlin.R | 133 ++++++++--- R/oneMarkerDistribution.R | 10 R/peel.R | 242 +++++++++++++++----- R/startdata.R | 30 +- R/thetaCorrection.R | 10 R/twoMarkerDistribution.R | 12 - R/utils.R | 72 ++++++ build/partial.rdb |binary man/likelihood.Rd | 360 +++++++++++++++--------------- man/oneMarkerDistribution.Rd | 201 ++++++++-------- man/pedprobr-package.Rd | 5 man/twoMarkerDistribution.Rd | 7 tests/testthat/test-X-linked-likelihood.R | 2 tests/testthat/test-inbred-founders.R | 5 tests/testthat/test-likelihood-linked.R | 25 ++ tests/testthat/test-likelihood-list.R | 29 ++ tests/testthat/test-loops.R |only 25 files changed, 944 insertions(+), 539 deletions(-)
Title: Mapping Averaged Pairwise Information
Description: Mapping Averaged Pairwise Information (MAPI) is an
exploratory method providing graphical representations summarizing the
spatial variation of pairwise metrics (eg. distance, similarity
coefficient, ...) computed between georeferenced samples.
Author: Sylvain Piry [aut, cre] ,
Thomas Campolunghi [aut],
Florent Cestier [aut],
Karine Berthier [aut]
Maintainer: Sylvain Piry <sylvain.piry@inrae.fr>
Diff between mapi versions 1.1.4 dated 2025-07-03 and 1.1.5 dated 2026-06-22
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 3 ++- R/MAPI_CheckData.R | 15 +++++++++++++++ R/MAPI_Plot2.R | 9 +++++---- R/MAPI_RunOnGrid.R | 4 +++- R/MAPI_Varicell.R | 3 +++ build/partial.rdb |binary data/metric.rda |binary data/samples.rda |binary inst/WORDLIST | 3 ++- tests/testthat/test-MAPI_Varicell.R | 9 ++++++--- 12 files changed, 51 insertions(+), 25 deletions(-)
Title: Creating, Exploring and Manipulating 'GTFS' Files
Description: Creating, exploring, analyzing, and manipulating General Transit
Feed Specification (GTFS) files, which represent public transportation
schedules and geographic data. The package allows users to filter data by
routes, trips, stops, service dates, and time, generate spatial
visualizations, and perform detailed analyses of transit networks,
including headway, dwell times, route frequencies, service span, scheduled
vehicle-hours, and trip duration. Methods follow common public transport
planning and operation concepts described in Ceder (2007,
ISBN:978-0-7506-6166-6), Vuchic (2005, ISBN:978-0-471-63265-8), and Vuchic
(2007, ISBN:978-0-471-75823-5).
Author: Nelson de Oliveira Quesado Filho [aut, cre],
Caio Gustavo Coelho Guimaraes [aut],
Francisco Moraes de Oliveira Neto [aut]
Maintainer: Nelson de Oliveira Quesado Filho <nquesado@gmail.com>
This is a re-admission after prior archival of version 1.1.0 dated 2025-03-15
Diff between GTFSwizard versions 1.1.0 dated 2025-03-15 and 1.2.0 dated 2026-06-22
DESCRIPTION | 44 + MD5 | 173 ++++--- NAMESPACE | 103 ---- NEWS.md | 38 + R/StartupMessage.R | 31 - R/as_wizardgtfs.R | 290 ++---------- R/create_gtfs.R |only R/data_documentation.R | 24 - R/delay_trip.R | 97 +--- R/edit_dwelltime.R | 103 ---- R/edit_speed.R | 113 ++--- R/explore_gtfs.R | 1006 +++++++++++++++++++++++++++----------------- R/filter_.R | 1013 ++++++--------------------------------------- R/get_1stdeparture.R | 63 -- R/get_corridor.R | 208 ++++----- R/get_distances.R | 200 +------- R/get_durations.R | 174 ++----- R/get_dwelltimes.R | 228 ++-------- R/get_fleet.R | 504 +++------------------- R/get_frequency.R | 329 ++------------ R/get_headways.R | 530 ++++------------------- R/get_hubs.R | 93 +--- R/get_servicepattern.R | 66 +- R/get_shapes.R | 141 +++--- R/get_shapes_df.R | 110 +--- R/get_shapes_sf.R | 137 ++---- R/get_speeds.R | 238 ++-------- R/get_stops_sf.R | 60 +- R/latlon2epsg.R | 76 +-- R/merge_gtfs.R | 289 +++--------- R/plot_.R | 479 ++++++++++----------- R/plot_calendar.R | 170 +++---- R/plot_service_planning.R |only R/plot_theme.R |only R/prints.R | 406 ++++-------------- R/read_gtfs.R | 47 -- R/selection.R | 470 ++++++++++---------- R/set_dwelltime.R | 130 ++--- R/split_trip.R | 282 +++++++----- R/tidy_raptor.R | 63 +- R/unselection.R | 11 R/utils.R | 851 +++++++++++++++++++++++++++++++------ R/write_gtfs.R | 142 ++---- R/zzz.R | 29 - README.md |only data/for_bus_gtfs.rda |binary data/for_rail_gtfs.rda |binary inst |only man/as_wizardgtfs.Rd | 24 - man/create_gtfs.Rd |only man/delay_trip.Rd | 34 - man/edit_dwelltime.Rd | 43 - man/edit_speed.Rd | 41 - man/explore_gtfs.Rd | 29 - man/filter_functions.Rd | 88 +-- man/for_bus_gtfs.Rd | 14 man/for_rail_gtfs.Rd | 3 man/get_1stdeparture.Rd | 31 - man/get_corridor.Rd | 40 - man/get_durations.Rd | 6 man/get_dwelltimes.Rd | 4 man/get_fleet.Rd | 54 -- man/get_frequency.Rd | 57 -- man/get_headways.Rd | 72 --- man/get_hubs.Rd | 34 - man/get_servicepattern.Rd | 23 - man/get_shapes.Rd | 29 - man/get_shapes_df.Rd | 37 - man/get_shapes_sf.Rd | 25 - man/get_speeds.Rd | 49 -- man/get_stops_sf.Rd | 21 man/latlon2epsg.Rd | 28 - man/merge_gtfs.Rd | 33 - man/plot_calendar.Rd | 29 - man/plot_corridor.Rd | 40 - man/plot_frequency.Rd | 19 man/plot_headways.Rd | 18 man/plot_hubs.Rd | 26 - man/plot_routeduration.Rd |only man/plot_routefrequency.Rd | 31 - man/plot_serviceheatmap.Rd |only man/plot_servicespan.Rd |only man/plot_servicesupply.Rd |only man/read_gtfs.Rd | 28 - man/selection.Rd | 87 +-- man/set_dwelltime.Rd | 33 - man/split_trip.Rd | 42 - man/wizardgtfs-methods.Rd |only man/write_gtfs.Rd | 25 - tests |only 90 files changed, 4165 insertions(+), 6593 deletions(-)
Title: Flexible Graphs for Analysis of Financial Data and Time Series
Description: Flexible wrappers around R graphics modules 'dygraphs' <https://dygraphs.com/> and 'ggplot2' <https://ggplot2.tidyverse.org/> to visualize data commonly found in Financial Studies, with an emphasis on time series.
Interactive time series plots include multiple options for incorporating external data such as forecasts and events. Other static plots useful for time
series data include an intuitive and generic scatter plotter, a boxplot generator suitable for multiple time series, and event study plotters for time series analysis
around sets of dates.
Author: Derek Holmes [aut, cre, cph]
Maintainer: Derek Holmes <derek@derekholmes.com>
Diff between FinanceGraphs versions 0.8.0 dated 2026-03-29 and 0.9.0 dated 2026-06-22
DESCRIPTION | 24 +++--- MD5 | 85 ++++++++++++----------- NAMESPACE | 4 + NEWS.md | 11 +++ R/Data.R | 12 +-- R/dates_of_interest.R | 20 ++--- R/es_ggplot.R | 4 - R/event_helpers.R | 42 +++++++++++ R/get_constants.R | 14 +-- R/preamble.R | 42 +++++------ R/scat_ggplot.R | 25 +++--- R/set_constants.R | 93 ++++++++++++++----------- R/sysdata.rda |binary R/themes.R | 2 R/ts_graphs.R | 8 +- R/utilities.R | 12 ++- README.md | 28 ++++--- build/vignette.rds |binary inst/doc/Time-Series-dygraph.html | 111 +++++++++++++++---------------- inst/doc/Time-Series-scatterplot.html | 4 - inst/extdata/doidates.csv | 60 ++++++++++++++++ man/FinanceGraphs-package.Rd | 6 + man/earnings_ibm.Rd | 2 man/eqtypx.Rd | 2 man/eqtypx_melt.Rd | 2 man/eqtyrtn.Rd | 2 man/example_fcst_set.Rd | 2 man/fg_RegimeChange.Rd |only man/fg_eventStudy.Rd | 2 man/fg_findTurningPoints.Rd | 4 - man/fg_scatplot.Rd | 8 +- man/fg_sync_group.Rd | 2 man/fgts_dygraph.Rd | 2 man/figures/README-Boxplot1-1.png |binary man/figures/README-EventStudies1-1.png |binary man/figures/README-EventStudies2-1.png |binary man/figures/README-Events1-1.png |binary man/figures/README-Events2-1.png |binary man/figures/README-Forecasts1-1.png |binary man/figures/README-simple_example1-1.png |binary man/figures/README-simple_example2-1.png |binary man/figures/README-simple_example3-1.png |binary man/nomfxdta.Rd | 2 man/set_constants.Rd | 2 44 files changed, 389 insertions(+), 250 deletions(-)
Title: Data Management Tools for Real-Time Monitoring/Ecological
Momentary Assessment Data
Description: Do data management functions common in real-time monitoring (also called: ecological momentary assessment, experience sampling, micro-longitudinal) data, including creating power curves for multilevel data, centering on participant means and merging event-level data into momentary data sets where you need the events to correspond to the nearest data point in the momentary data. For background on this data type see Shiffman, Stone and Hufford (2008) <doi:10.1146/annurev.clinpsy.3.022806.091415>, and on the centering methods see Enders and Tofighi (2007) <doi:10.1037/1082-989X.12.2.121>. This is VERY early release software, and more features will be added over time.
Author: Evan Kleiman [aut, cre]
Maintainer: Evan Kleiman <evan.kleiman@rutgers.edu>
This is a re-admission after prior archival of version 0.1.4 dated 2021-10-31
Diff between EMAtools versions 0.1.4 dated 2021-10-31 and 0.1.6 dated 2026-06-22
DESCRIPTION | 12 +++--- MD5 | 39 ++++++++++--------- NAMESPACE | 1 NEWS.md |only R/ObsNumbs.R | 11 ++++- R/comparelme.R | 10 +++-- R/eventmerge.R | 94 +++++++++++++++++++++++++++-------------------- R/gcenter.R | 3 + R/lme.dscore.R | 7 ++- R/pcenter.R | 3 + R/pmean.R | 3 + R/powercurve.R | 11 +++-- R/zzz.R | 7 +-- man/ObsNumbs.Rd | 11 ++++- man/ema.powercurve.Rd | 11 +++-- man/eventmerge.Rd | 17 ++++++-- man/gcenter.Rd | 3 + man/lm_slopes_compare.Rd | 10 +++-- man/lme.dscore.Rd | 7 ++- man/pcenter.Rd | 3 + man/pmean.Rd | 3 + 21 files changed, 161 insertions(+), 105 deletions(-)
Title: Multivariate Data Analysis
Description: Simple Principal Components Analysis (PCA) and (Multiple)
Correspondence Analysis (CA) based on the Singular Value Decomposition
(SVD). This package provides S4 classes and methods to compute,
extract, summarize and visualize results of multivariate data
analysis. It also includes methods for partial bootstrap validation
described in Greenacre (1984, ISBN: 978-0-12-299050-2) and Lebart et
al. (2006, ISBN: 978-2-10-049616-7).
Author: Nicolas Frerebeau [aut, cre] ,
Jean-Baptiste Fourvel [ctb] ,
Camille Thabard [ctb] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between dimensio versions 0.14.1 dated 2025-09-03 and 0.14.2 dated 2026-06-22
DESCRIPTION | 14 - MD5 | 159 ++++++------- NAMESPACE | 20 - NEWS.md | 4 R/annotations.R | 4 R/biplot.R | 4 R/coerce.R | 3 R/dimensio-package.R | 29 +- R/export.R | 4 R/plot.R | 2 R/show.R | 2 R/viz_coordinates.R | 26 +- R/viz_cos2.R | 4 R/viz_ellipse.R | 2 README.md | 23 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 inst/doc/pca.html | 16 - inst/examples/ex-predict.R | 6 inst/tinytest/_tinysnapshot/PCA_ind_confidence.svg | 6 inst/tinytest/_tinysnapshot/PCA_ind_highlight_quali_na.svg |only inst/tinytest/_tinysnapshot/PCA_ind_tolerance.svg | 6 inst/tinytest/test_biplot_ca.R | 63 ++--- inst/tinytest/test_biplot_pca.R | 56 ++-- inst/tinytest/test_bootstrap_ca.R | 2 inst/tinytest/test_bootstrap_pca.R | 2 inst/tinytest/test_ca.R | 2 inst/tinytest/test_pca.R | 2 inst/tinytest/test_pcoa.R | 50 +--- inst/tinytest/test_plot_ca.R | 88 +++---- inst/tinytest/test_plot_pca.R | 144 ++++++----- inst/tinytest/test_subset.R | 4 inst/tinytest/test_summary.R | 4 inst/tinytest/test_viz.R | 21 + man/BootstrapCA-class.Rd | 4 man/BootstrapPCA-class.Rd | 4 man/CA-class.Rd | 4 man/MCA-class.Rd | 4 man/MultivariateAnalysis.Rd | 6 man/MultivariateBootstrap.Rd | 2 man/MultivariateResults.Rd | 2 man/MultivariateSummary.Rd | 2 man/PCA-class.Rd | 4 man/PCOA-class.Rd | 2 man/benthos.Rd | 2 man/biplot.Rd | 14 - man/bootstrap.Rd | 4 man/burt.Rd | 4 man/ca.Rd | 12 man/cdt.Rd | 4 man/colours.Rd | 2 man/countries.Rd | 2 man/describe.Rd | 8 man/dimensio-package.Rd | 11 man/dimnames.Rd | 6 man/export.Rd | 18 - man/get_contributions.Rd | 14 - man/get_coordinates.Rd | 14 - man/get_data.Rd | 14 - man/get_eigenvalues.Rd | 14 - man/mca.Rd | 12 man/pca.Rd | 12 man/pcoa.Rd | 12 man/plot.Rd | 12 man/predict.Rd | 18 - man/prepare_plot.Rd | 15 + man/reexports.Rd | 2 man/screeplot.Rd | 14 - man/subset.Rd | 4 man/summary.Rd | 10 man/tidy.Rd | 8 man/viz_confidence.Rd | 12 man/viz_contributions.Rd | 14 - man/viz_ellipses.Rd | 12 man/viz_hull.Rd | 12 man/viz_individuals.Rd | 14 - man/viz_points.Rd | 2 man/viz_tolerance.Rd | 12 man/viz_variables.Rd | 14 - tests/tinytest.R | 6 81 files changed, 596 insertions(+), 572 deletions(-)
Title: Adherence to Medications
Description: Computation of adherence to medications from Electronic Health care
Data and visualization of individual medication histories and adherence
patterns. The package implements a set of S3 classes and
functions consistent with current adherence guidelines and definitions.
It allows the computation of different measures of
adherence (as defined in the literature, but also several original ones),
their publication-quality plotting,
the estimation of event duration and time to initiation,
the interactive exploration of patient medication history and
the real-time estimation of adherence given various parameter settings.
It scales from very small datasets stored in flat CSV files to very large
databases and from single-thread processing on mid-range consumer
laptops to parallel processing on large heterogeneous computing clusters.
It exposes a standardized interface allowing it to be used from other
programming languages and platforms, such as Python.
Author: Dan Dediu [aut, cre],
Alexandra L. Dima [aut],
Samuel Allemann [aut]
Maintainer: Dan Dediu <ddediu@gmail.com>
Diff between AdhereR versions 0.8.2 dated 2026-01-15 and 0.8.3 dated 2026-06-22
DESCRIPTION | 6 ++-- MD5 | 14 +++++----- NEWS.md | 6 ++++ R/adherer.R | 3 +- inst/doc/AdhereR-overview.html | 40 ++++++++++++++--------------- inst/doc/calling-AdhereR-from-python3.Rmd | 2 - inst/doc/calling-AdhereR-from-python3.html | 6 ++-- vignettes/calling-AdhereR-from-python3.Rmd | 2 - 8 files changed, 43 insertions(+), 36 deletions(-)
More information about NeutroSplitStripAnalysis at CRAN
Permanent link
Title: Analyze the Impact of Sensor Error Modelling on Navigation
Performance
Description: Implements the framework presented in Cucci, D. A., Voirol, L., Khaghani, M. and Guerrier, S. (2023) <doi:10.1109/TIM.2023.3267360> which allows to analyze the impact of sensor error modeling on the performance of integrated navigation (sensor fusion) based on inertial measurement unit (IMU), Global Positioning System (GPS), and barometer data.
The framework relies on Monte Carlo simulations in which a Vanilla Extended Kalman filter is coupled with realistic and user-configurable noise generation mechanisms to recover a reference trajectory from noisy measurements.
The evaluation of several statistical metrics of the solution, aggregated over hundreds of simulated realizations, provides reasonable estimates of the expected performances of the system in real-world conditions.
Author: Davide A. Cucci [aut],
Lionel Voirol [aut, cre],
Mehran Khaghani [aut],
Stephane Guerrier [aut]
Maintainer: Lionel Voirol <lionelvoirol@hotmail.com>
This is a re-admission after prior archival of version 0.0.1 dated 2023-05-16
Diff between navigation versions 0.0.1 dated 2023-05-16 and 0.0.2 dated 2026-06-22
DESCRIPTION | 15 +- MD5 | 34 ++-- NAMESPACE | 1 NEWS.md | 4 R/gen_snsr_data.R | 1 R/test_cpp.R | 38 ++--- README.md | 49 ++++--- build/vignette.rds |binary inst/doc/compare_model.R | 24 +-- inst/doc/compare_model.Rmd | 17 +- inst/doc/compare_model.html | 173 ++++++++++++------------ inst/doc/model_evaluation.R | 28 ++-- inst/doc/model_evaluation.Rmd | 21 +-- inst/doc/model_evaluation.html | 284 +++++++++++++++++------------------------ src/Makevars | 2 src/Makevars.win | 2 vignettes/compare_model.Rmd | 17 +- vignettes/model_evaluation.Rmd | 21 +-- 18 files changed, 354 insertions(+), 377 deletions(-)
Title: Tidy Flowchart Generator
Description: Creates participant flow diagrams directly from a dataframe. Representing the flow of participants through each stage of a study, especially in clinical trials, is essential to assess the generalisability and validity of the results. This package provides a set of functions that can be combined with a pipe operator to create all kinds of flowcharts from a data frame in an easy way.
Author: Pau Satorra [aut, cre] ,
Joao Carmezim [aut] ,
Natalia Pallares [aut] ,
Cristian Tebe [aut] ,
Kenneth Taylor [aut]
Maintainer: Pau Satorra <psatorra@igtp.cat>
Diff between flowchart versions 1.0.0 dated 2025-11-26 and 1.0.1 dated 2026-06-22
DESCRIPTION | 9 +++++---- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/fc_split.R | 2 +- README.md | 1 + build/vignette.rds |binary inst/doc/flowchart.html | 15 ++++++++------- tests/testthat/Rplots.pdf |binary tests/testthat/test.pdf |binary 9 files changed, 27 insertions(+), 20 deletions(-)
Title: Read bigWig and bigBed Files
Description: Read bigWig and bigBed files using "libBigWig"
<https://github.com/dpryan79/libBigWig>. Provides lightweight access
to the binary bigWig and bigBed formats developed by the UCSC Genome
Browser group.
Author: Jay Hesselberth [aut, cre],
RNA Bioscience Initiative [fnd, cph],
Devon Ryan [cph]
Maintainer: Jay Hesselberth <jay.hesselberth@gmail.com>
Diff between cpp11bigwig versions 0.2.0 dated 2026-06-18 and 0.3.0 dated 2026-06-22
DESCRIPTION | 6 MD5 | 21 + NEWS.md | 34 +++ R/cpp11.R | 8 R/read.r | 217 +++++++++++++++++--- man/read_bigbed.Rd | 25 ++ man/read_bigwig.Rd | 39 +++ src/cpp11.cpp | 12 - src/cpp11bigwig.cpp | 378 +++++++++++++++++++---------------- src/libBigWig/bwValues.c | 9 tests/testthat/data/test_noschema.bb |only tests/testthat/test-read.R | 119 +++++++++++ 12 files changed, 647 insertions(+), 221 deletions(-)
Title: Systematically Run R CMD Checks
Description: Systematically Run R checks against multiple packages. Checks are run in
parallel with strategies to minimize dependency installation. Provides
out of the box interface for running reverse dependency check.
Author: Szymon Maksymiuk [cre, aut] ,
Doug Kelkhoff [aut] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Szymon Maksymiuk <sz.maksymiuk@gmail.com>
Diff between checked versions 0.5.1 dated 2026-02-25 and 0.5.4 dated 2026-06-22
DESCRIPTION | 6 +- MD5 | 72 ++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 43 +++++++++++++++++ R/check_process.R | 33 ++++++++----- R/checker.R | 24 ++++++++- R/install.R | 55 +++++++++++++++------- R/lib.R | 4 + R/next_task.R | 26 ++++++---- R/options.R | 14 +++++ R/pkg_origin.R | 23 ++------- R/plan.R | 36 ++++++++++---- R/remotes.R | 29 ++++++++--- R/reporter.R | 32 ++++++++----- R/reporter_basic_tty.R | 50 ++++++++++++++++---- R/results.R | 5 ++ R/run.R | 6 +- R/task.R | 3 + R/task_graph.R | 60 ++++++++++++++++-------- R/utils-deps.R | 17 +++--- R/utils-igraph.R | 91 +++++++++++++++++++++++-------------- R/utils-paths.R | 6 +- R/utils-pkg-source.R | 7 ++ R/utils.R | 23 +++++++-- man/checker.Rd | 23 +++++++++ man/graph_dedup_attrs.Rd | 5 +- man/install_task.Rd | 3 + man/options.Rd | 21 ++++++++ man/options_params.Rd | 9 +++ man/pkg_origin.Rd | 3 - man/plan_local_checks.Rd | 10 +++- man/plan_local_install.Rd | 14 +++++ man/plan_rev_dep_checks.Rd | 10 +++- man/reporters.Rd | 16 ++++-- man/run.Rd | 2 man/task_graph.Rd | 5 +- tests/testthat/_snaps/reporters.md | 14 ++--- 37 files changed, 570 insertions(+), 231 deletions(-)
Title: Retrieving and Analyzing Air Quality and Weather Data from ARPA
Lombardia
Description: Contains functions for retrieving, managing, and analyzing air quality and weather data from the Regione Lombardia open database (<https://www.dati.lombardia.it/>).
Data are collected by ARPA Lombardia (Lombardia Environmental Protection Agency), Italy, through its ground monitoring network (<https://www.dati.lombardia.it/stories/s/auv9-c2sj>).
See the website <https://www.arpalombardia.it/> for further information on ARPA Lombardia's activities and history.
Data quality (e.g., missing values, extreme values, and graphical mapping) has been checked in collaboration with members of ARPA Lombardia's air quality control office.
The package provides observations since 1989 (for weather) and 1968 (for air quality), and these data are updated daily by the regional agency.
A full description of the package is available in the companion paper Maranzano \& Algieri (2024), "ARPALData: an R package for retrieving and analyzing air quality
and weather data from ARPA Lombardia [...truncated...]
Author: Paolo Maranzano [aut, cre, cph] ,
Andrea Algieri [aut, cph]
Maintainer: Paolo Maranzano <pmaranzano.ricercastatistica@gmail.com>
This is a re-admission after prior archival of version 1.6.1 dated 2025-01-10
Diff between ARPALData versions 1.6.1 dated 2025-01-10 and 2.0.0 dated 2026-06-22
DESCRIPTION | 26 MD5 | 77 - NAMESPACE | 53 - R/AQ_metadata_reshape.R | 247 ++--- R/AQ_municipal_metadata_reshape.R | 159 +-- R/ARPALData.R | 22 R/ARPAL_parse_socrata_date.R |only R/ARPAL_parse_socrata_datetime.R |only R/ARPAL_read_socrata_json.R |only R/ARPALdf_Summary.R | 817 +++++++++---------- R/ARPALdf_Summary_map.R | 242 ++--- R/Custom_summarise.R | 140 +-- R/Time_aggregate.R | 350 ++++---- R/W_download_current.R | 342 ++++---- R/W_download_past.R | 415 +++++---- R/W_metadata_reshape.R | 194 ++-- R/get_ARPA_Lombardia_AQ_data.R | 820 +++++++++---------- R/get_ARPA_Lombardia_AQ_municipal_data.R | 1008 ++++++++++++------------ R/get_ARPA_Lombardia_AQ_municipal_registry.R | 44 - R/get_ARPA_Lombardia_AQ_registry.R | 46 - R/get_ARPA_Lombardia_W_data.R | 688 ++++++++-------- R/get_ARPA_Lombardia_W_registry.R | 51 - R/get_ARPA_Lombardia_zoning.R | 186 ++-- R/map_Lombardia_stations.R | 162 +-- R/quantilep.R | 49 - R/registry_KNN_dist.R | 142 +-- R/url_AQ_year_dataset.R | 84 +- R/url_W_year_par.R | 186 ++-- man/ARPALData.Rd | 2 man/ARPALdf_Summary.Rd | 24 man/ARPALdf_Summary_map.Rd | 12 man/Time_aggregate.Rd | 12 man/get_ARPA_Lombardia_AQ_data.Rd | 36 man/get_ARPA_Lombardia_AQ_municipal_data.Rd | 41 man/get_ARPA_Lombardia_AQ_municipal_registry.Rd | 2 man/get_ARPA_Lombardia_AQ_registry.Rd | 2 man/get_ARPA_Lombardia_W_data.Rd | 24 man/get_ARPA_Lombardia_W_registry.Rd | 3 man/get_ARPA_Lombardia_zoning.Rd | 4 man/map_Lombardia_stations.Rd | 22 man/registry_KNN_dist.Rd | 4 41 files changed, 3457 insertions(+), 3281 deletions(-)
Title: Easily Access and Maintain Time-Based Versioned Data
(Slowly-Changing-Dimension)
Description: A collection of functions that enable easy access and updating of a database of data over time.
More specifically, the package facilitates type-2 history for data-warehouses and provides a number
of Quality of life improvements for working on SQL databases with R.
For reference see Ralph Kimball and Margy Ross (2013, ISBN 9781118530801).
Author: Rasmus Skytte Randloev [aut, cre, rev] ,
Marcus Munch Gruenewald [aut] ,
Lasse Engbo Christiansen [rev, ctb] ,
Sofia Myrup Otero [rev],
Kim Daniel Jacobsen [ctb],
Statens Serum Institut [cph, fnd]
Maintainer: Rasmus Skytte Randloev <rske@ssi.dk>
Diff between SCDB versions 0.6.1 dated 2026-05-18 and 0.6.2 dated 2026-06-22
DESCRIPTION | 27 - MD5 | 26 - NEWS.md | 739 ++++++++++++++++---------------- R/Logger.R | 14 R/update_snapshot.R | 8 build/vignette.rds |binary inst/WORDLIST | 8 inst/doc/SCDB.html | 32 - inst/doc/benchmarks.html | 4 inst/doc/delta-loading.html | 32 - inst/doc/slowly-changing-dimension.R | 280 ++++++------ inst/doc/slowly-changing-dimension.html | 151 +----- inst/extdata/benchmarks.rds |binary tests/testthat/test-Logger.R | 46 + 14 files changed, 641 insertions(+), 726 deletions(-)
Title: Easily Install and Load the 'mlr3' Package Family
Description: The 'mlr3' package family is a set of packages for
machine-learning purposes built in a modular fashion. This wrapper
package is aimed to simplify the installation and loading of the core
'mlr3' packages. Get more information about the 'mlr3' project at
<https://mlr3book.mlr-org.com/>.
Author: Michel Lang [aut] ,
Patrick Schratz [aut] ,
Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3verse versions 0.3.1 dated 2025-01-14 and 0.3.2 dated 2026-06-22
DESCRIPTION | 14 +++++++------- MD5 | 14 +++++++------- NAMESPACE | 2 -- NEWS.md | 4 ++++ R/reexports_mlr3pipelines.R | 4 ---- README.md | 2 +- man/mlr3verse-package.Rd | 1 + man/reexports.Rd | 25 ++++++++++++------------- 8 files changed, 32 insertions(+), 34 deletions(-)
Title: Generalized Linear Latent Variable Models
Description: Analysis of multivariate data using generalized linear latent variable models (gllvm).
Estimation is performed using either the Laplace method, variational approximations, or extended variational approximations, implemented via TMB (Kristensen et al. (2016), <doi:10.18637/jss.v070.i05>).
Author: Jenni Niku [aut, cre],
Wesley Brooks [aut],
Riki Herliansyah [aut],
Francis K.C. Hui [aut],
Pekka Korhonen [aut],
Sara Taskinen [aut],
Bert van der Veen [aut],
David I. Warton [aut]
Maintainer: Jenni Niku <jenni.m.e.niku@jyu.fi>
Diff between gllvm versions 2.0.10 dated 2026-05-10 and 2.0.11 dated 2026-06-22
DESCRIPTION | 8 MD5 | 70 ++--- NAMESPACE | 3 NEWS.md | 16 + R/TMBtrait.R | 8 R/aicc.gllvm.R | 3 R/gllvm.R | 30 ++ R/gllvm.TMB.R | 84 ++++-- R/gllvm.auxiliary.R | 253 +++++++++---------- R/gllvm.iter.R | 27 +- R/glmmVA.R | 210 ++++++++++++++-- R/logLik.gllvm.R | 2 R/phyloplot.gllvm.R | 1 R/predict.gllvm.R | 2 R/predictSR.gllvm.R | 46 ++- R/print.gllvm.R | 2 R/residuals.gllvm.R | 22 - R/se.gllvm.R | 43 ++- inst/doc/vignette1.html | 41 +-- inst/doc/vignette2.html | 66 ++--- inst/doc/vignette3.html | 530 ++++++++++++++++++++--------------------- inst/doc/vignette4.html | 120 ++++----- inst/doc/vignette5.html | 11 inst/doc/vignette6.html | 24 - inst/doc/vignette7.html | 31 +- inst/doc/vignette8.html | 285 ++++++++++------------ inst/doc/vignette9.html | 7 man/glmmVA.Rd | 9 man/predict.gllvm.Rd | 2 man/predict.glmmVA.Rd |only man/predictPairwise.gllvm.Rd | 6 man/predictSR.gllvm.Rd | 8 man/ranef.Rd |only man/ranef.glmmVA.Rd |only src/distrib.h | 30 -- src/gllvm.cpp | 298 +++++++++++------------ tests/testthat/test-fitgllvm.R | 4 tests/testthat/test-glmmVA.R |only 38 files changed, 1280 insertions(+), 1022 deletions(-)
Title: Interpretable Civic-Accountable and Responsible Machine Learning
Description: A general-purpose framework for Interpretable Civic-Accountable
and Responsible Machine Learning (ICARM). Works with any clean tabular
data and automatically detects whether a task is binary classification,
multi-class classification, or regression from the target variable type.
Provides a single unified entry point civic_fit() alongside tidy interfaces
for global and local model explanations, group-level fairness auditing,
probability calibration, multi-model comparison, threshold analysis, and
reproducible audit trails. Designed to support the DataCitizen-Pro research
agenda at Ludwigsburg University of Education: developing data literacy,
statistical reasoning, and democratic judgment formation in civic and
political teacher education.
References: Biecek (2018) <doi:10.18637/jss.v085.i04>,
Kuhn (2008) <doi:10.18637/jss.v028.i05>,
Awe (2025) <https://github.com/Olawaleawe/civic.icarm>.
Author: Olushina Olawale Awe [aut, cre],
Ludwigsburg University of Education [fnd]
Maintainer: Olushina Olawale Awe <olawaleawe@gmail.com>
Diff between civic.icarm versions 0.2.0 dated 2026-06-17 and 0.3.0 dated 2026-06-22
DESCRIPTION | 8 MD5 | 26 - NAMESPACE | 2 R/civic.icarm-package.R | 4 R/data.R | 67 +++ R/plots.R | 777 ++++++++++++++++++++++++++++++++++++++---- README.md | 2 data/civic_racism_survey.rda |only man/civic_dashboard.Rd |only man/civic_plot_calibration.Rd |only man/civic_plot_comparison.Rd |only man/civic_plot_confusion.Rd |only man/civic_plot_fairness.Rd |only man/civic_plot_importance.Rd |only man/civic_plot_roc_groups.Rd |only man/civic_plot_thresholds.Rd |only man/civic_plots.Rd | 16 man/civic_racism_survey.Rd |only man/predict.civic_model.Rd | 70 +-- 19 files changed, 835 insertions(+), 137 deletions(-)
Title: Bayesian Kernel Projection Classifier
Description: Bayesian kernel projection classifier (Domijan and Wilson,2011) <doi:10.1007/s11222-009-9161-8> is a nonlinear multicategory classifier which performs the classification of the projections of the data to the principal axes of the feature space. A Gibbs sampler is implemented to find the posterior distributions of the parameters.
Author: Katarina Domijan [aut, cre]
Maintainer: Katarina Domijan <domijank@tcd.ie>
This is a re-admission after prior archival of version 1.0.1 dated 2018-03-13
Diff between BKPC versions 1.0.1 dated 2018-03-13 and 1.0.2 dated 2026-06-22
BKPC-1.0.1/BKPC/R/plot.marginalRelevance.R |only BKPC-1.0.1/BKPC/man/plot.marginalRelevance.Rd |only BKPC-1.0.2/BKPC/DESCRIPTION | 24 - BKPC-1.0.2/BKPC/LICENSE |only BKPC-1.0.2/BKPC/MD5 | 67 +-- BKPC-1.0.2/BKPC/NAMESPACE | 35 - BKPC-1.0.2/BKPC/R/bkpc.R | 8 BKPC-1.0.2/BKPC/R/bkpc.default.R | 36 - BKPC-1.0.2/BKPC/R/bkpc.kern.R | 140 +++--- BKPC-1.0.2/BKPC/R/bkpc.kernelMatrix.R | 36 - BKPC-1.0.2/BKPC/R/gaussKern.R | 30 - BKPC-1.0.2/BKPC/R/getPrincipalComponents.R | 38 - BKPC-1.0.2/BKPC/R/kPCA.R | 8 BKPC-1.0.2/BKPC/R/kPCA.default.R | 28 - BKPC-1.0.2/BKPC/R/kPCA.kern.R | 14 BKPC-1.0.2/BKPC/R/kPCA.kernelMatrix.R | 18 BKPC-1.0.2/BKPC/R/marginalRelevance.R | 56 +- BKPC-1.0.2/BKPC/R/plot.bkpc.R | 102 ++-- BKPC-1.0.2/BKPC/R/predict.bkpc.R | 119 ++--- BKPC-1.0.2/BKPC/R/predict.kPCA.R | 60 +- BKPC-1.0.2/BKPC/R/predictMultinomSamples.R | 76 +-- BKPC-1.0.2/BKPC/R/summary.bkpc.R | 88 ++-- BKPC-1.0.2/BKPC/README.md | 27 + BKPC-1.0.2/BKPC/data/microarray.rda |binary BKPC-1.0.2/BKPC/man/BKPC-package.Rd | 74 +-- BKPC-1.0.2/BKPC/man/bkpc.Rd | 560 +++++++++++++------------- BKPC-1.0.2/BKPC/man/gaussKern.Rd | 110 ++--- BKPC-1.0.2/BKPC/man/kPCA.Rd | 256 +++++------ BKPC-1.0.2/BKPC/man/marginalRelevance.Rd | 153 +++---- BKPC-1.0.2/BKPC/man/microarray.Rd | 54 +- BKPC-1.0.2/BKPC/man/plot.bkpc.Rd | 114 ++--- BKPC-1.0.2/BKPC/man/predict.bkpc.Rd | 176 ++++---- BKPC-1.0.2/BKPC/man/summary.bkpc.Rd | 98 ++-- BKPC-1.0.2/BKPC/src/BKPC_init.c | 2 BKPC-1.0.2/BKPC/src/Makevars | 2 BKPC-1.0.2/BKPC/src/matrices.c | 20 36 files changed, 1328 insertions(+), 1301 deletions(-)
Title: Simulation-Based Landscape Construction for Dynamical Systems
Description: A toolbox for constructing potential landscapes for dynamical
systems using Monte Carlo simulation. The method is based on the
potential landscape definition by Wang et al. (2008)
<doi:10.1073/pnas.0800579105> (also see Zhou & Li, 2016
<doi:10.1063/1.4943096> for further mathematical discussions) and can
be used for a large variety of models.
Author: Jingmeng Cui [aut, cre]
Maintainer: Jingmeng Cui <jingmeng.cui@outlook.com>
Diff between simlandr versions 0.4.0 dated 2025-02-12 and 0.4.1 dated 2026-06-22
simlandr-0.4.0/simlandr/R/dijkstra.R |only simlandr-0.4.0/simlandr/inst/doc/simlandr.Rnw |only simlandr-0.4.0/simlandr/inst/doc/simlandr.pdf |only simlandr-0.4.0/simlandr/vignettes/simlandr.Rnw |only simlandr-0.4.0/simlandr/vignettes/simlandr_manuscript.pdf |only simlandr-0.4.1/simlandr/DESCRIPTION | 24 + simlandr-0.4.1/simlandr/MD5 | 118 ++++----- simlandr-0.4.1/simlandr/NAMESPACE | 9 simlandr-0.4.1/simlandr/NEWS.md | 9 simlandr-0.4.1/simlandr/R/RcppExports.R |only simlandr-0.4.1/simlandr/R/barrier.R | 109 ++++++-- simlandr-0.4.1/simlandr/R/barrier_batch.R | 24 + simlandr-0.4.1/simlandr/R/batch_simulation.R | 8 simlandr-0.4.1/simlandr/R/check_conv.R | 6 simlandr-0.4.1/simlandr/R/hash_big.R | 6 simlandr-0.4.1/simlandr/R/kernel_api.R | 37 ++ simlandr-0.4.1/simlandr/R/methods_landscape.R | 139 ++++++++-- simlandr-0.4.1/simlandr/R/multiple_simulation_landscape.R | 29 +- simlandr-0.4.1/simlandr/R/simlandr-package.R | 9 simlandr-0.4.1/simlandr/R/simulation.R | 10 simlandr-0.4.1/simlandr/README.md | 26 +- simlandr-0.4.1/simlandr/build/partial.rdb |binary simlandr-0.4.1/simlandr/build/vignette.rds |binary simlandr-0.4.1/simlandr/inst/CITATION |only simlandr-0.4.1/simlandr/inst/doc/barrier.R | 12 simlandr-0.4.1/simlandr/inst/doc/barrier.Rmd | 12 simlandr-0.4.1/simlandr/inst/doc/barrier.html | 23 - simlandr-0.4.1/simlandr/inst/doc/landscape.R | 20 - simlandr-0.4.1/simlandr/inst/doc/landscape.Rmd | 23 - simlandr-0.4.1/simlandr/inst/doc/landscape.html | 31 +- simlandr-0.4.1/simlandr/inst/doc/simulation.html | 33 +- simlandr-0.4.1/simlandr/man/arg_set-class.Rd | 164 ++++++------ simlandr-0.4.1/simlandr/man/as.mcmc.list.Rd | 2 simlandr-0.4.1/simlandr/man/attach_all_matrices.Rd | 38 +- simlandr-0.4.1/simlandr/man/autolayer.barrier.Rd | 42 +-- simlandr-0.4.1/simlandr/man/autoplot.landscape.Rd |only simlandr-0.4.1/simlandr/man/calculate_barrier.Rd | 178 +++++++------- simlandr-0.4.1/simlandr/man/calculate_barrier_3d_core.Rd |only simlandr-0.4.1/simlandr/man/determine_lims.Rd |only simlandr-0.4.1/simlandr/man/fill_in_struct.Rd | 46 +-- simlandr-0.4.1/simlandr/man/get_barrier_height.Rd | 44 +-- simlandr-0.4.1/simlandr/man/get_dist.Rd | 38 +- simlandr-0.4.1/simlandr/man/get_geom.Rd | 44 +-- simlandr-0.4.1/simlandr/man/hash_big_matrix-class.Rd | 88 +++--- simlandr-0.4.1/simlandr/man/make_2d_matrix.Rd | 94 +++---- simlandr-0.4.1/simlandr/man/make_2d_tidy_dist.Rd | 44 +-- simlandr-0.4.1/simlandr/man/make_3d_animation.Rd | 101 ++++--- simlandr-0.4.1/simlandr/man/make_3d_matrix.Rd | 96 +++---- simlandr-0.4.1/simlandr/man/make_barrier_grid_2d.Rd | 62 ++-- simlandr-0.4.1/simlandr/man/make_barrier_grid_3d.Rd | 62 ++-- simlandr-0.4.1/simlandr/man/modified_simulation.Rd | 30 +- simlandr-0.4.1/simlandr/man/multi_init_simulation.Rd | 2 simlandr-0.4.1/simlandr/man/pipe.Rd | 24 - simlandr-0.4.1/simlandr/man/plot.landscape.Rd | 50 ++- simlandr-0.4.1/simlandr/man/plotly_ld.Rd |only simlandr-0.4.1/simlandr/man/reexports.Rd |only simlandr-0.4.1/simlandr/man/save_landscape.Rd | 48 +-- simlandr-0.4.1/simlandr/man/sim_fun_grad.Rd | 76 ++--- simlandr-0.4.1/simlandr/man/sim_fun_nongrad.Rd | 110 ++++---- simlandr-0.4.1/simlandr/man/sim_fun_test2.Rd | 36 +- simlandr-0.4.1/simlandr/man/simlandr-package.Rd | 57 ++-- simlandr-0.4.1/simlandr/man/summary.barrier.Rd | 38 +- simlandr-0.4.1/simlandr/src |only simlandr-0.4.1/simlandr/tests |only simlandr-0.4.1/simlandr/vignettes/barrier.Rmd | 12 simlandr-0.4.1/simlandr/vignettes/landscape.Rmd | 23 - 66 files changed, 1301 insertions(+), 1065 deletions(-)
Title: Quantile Regression Coefficients Modeling
Description: Parametric modeling of quantile regression coefficient functions.
Author: Paolo Frumento [aut, cre]
Maintainer: Paolo Frumento <paolo.frumento@unipi.it>
Diff between qrcm versions 3.2 dated 2025-04-03 and 3.3 dated 2026-06-22
DESCRIPTION | 11 +++++----- MD5 | 26 +++++++++++------------ NEWS.md | 4 +-- R/iqr1_fit.R | 2 + R/iqrL1_fit.R | 23 ++++++++++++++++---- R/iqrL2_auxfun.R | 56 ++++++++++++++++++++++++++++++++++++--------------- R/iqrL3_test_fit.R | 31 +++++++++++++++++++++------- man/iqr.Rd | 2 - man/iqrL.Rd | 15 +++++++++++-- man/plot.iqrL.Rd | 3 +- man/predict.iqrL.Rd | 1 man/qrcm-package.Rd | 6 ++--- man/summary.iqrL.Rd | 2 + man/test.fit.iqrL.Rd | 2 - 14 files changed, 128 insertions(+), 56 deletions(-)
Title: Piece-Wise Exponential Additive Mixed Modeling Tools for
Survival Analysis
Description: The Piece-wise exponential (Additive Mixed) Model
(PAMM; Bender and others (2018) <doi: 10.1177/1471082X17748083>) is a
powerful model class for the analysis of survival (or time-to-event) data,
based on Generalized Additive (Mixed) Models (GA(M)Ms).
It offers intuitive specification and robust estimation of complex survival
models with stratified baseline hazards, random effects, time-varying effects,
time-dependent covariates and cumulative effects (Bender and others (2019)),
as well as support for left-truncated data as well as competing risks,
recurrent events and multi-state settings.
pammtools provides tidy workflow for survival analysis with PAMMs,
including data simulation, transformation and other functions for data
preprocessing and model post-processing as well as visualization.
Author: Andreas Bender [aut, cre] ,
Fabian Scheipl [aut] ,
Johannes Piller [aut] ,
Philipp Kopper [aut] ,
Lukas Burk [ctb]
Maintainer: Andreas Bender <andreas.bender@stat.uni-muenchen.de>
Diff between pammtools versions 0.7.4 dated 2026-02-16 and 0.8.0 dated 2026-06-22
pammtools-0.7.4/pammtools/man/get_sim_cumu.Rd |only pammtools-0.8.0/pammtools/DESCRIPTION | 15 pammtools-0.8.0/pammtools/MD5 | 178 - pammtools-0.8.0/pammtools/NAMESPACE | 25 pammtools-0.8.0/pammtools/NEWS.md | 118 pammtools-0.8.0/pammtools/R/add-functions.R | 1735 ++++++---- pammtools-0.8.0/pammtools/R/as-ped-ic.R |only pammtools-0.8.0/pammtools/R/as-ped.R | 386 +- pammtools-0.8.0/pammtools/R/convenience-plots.R | 130 pammtools-0.8.0/pammtools/R/cumulative-coefficient.R | 280 + pammtools-0.8.0/pammtools/R/cumulative-effect.R | 52 pammtools-0.8.0/pammtools/R/data.R | 10 pammtools-0.8.0/pammtools/R/formula-specials.R | 3 pammtools-0.8.0/pammtools/R/formula-utils.R | 93 pammtools-0.8.0/pammtools/R/get-terms.R | 429 ++ pammtools-0.8.0/pammtools/R/ggplot-extensions.R | 116 pammtools-0.8.0/pammtools/R/impute-ic.R |only pammtools-0.8.0/pammtools/R/make-newdata.R | 365 +- pammtools-0.8.0/pammtools/R/model-helpers.R |only pammtools-0.8.0/pammtools/R/multi-state-helpers.R | 28 pammtools-0.8.0/pammtools/R/pamm-ic-pool.R |only pammtools-0.8.0/pammtools/R/pamm-ic.R |only pammtools-0.8.0/pammtools/R/pammfit.R | 64 pammtools-0.8.0/pammtools/R/pool-ic.R |only pammtools-0.8.0/pammtools/R/predict.R | 19 pammtools-0.8.0/pammtools/R/sim-ic.R |only pammtools-0.8.0/pammtools/R/sim-pexp.R | 216 - pammtools-0.8.0/pammtools/R/split-data.R | 267 - pammtools-0.8.0/pammtools/R/tidiers.R | 121 pammtools-0.8.0/pammtools/R/tidyverse-methods.R | 323 + pammtools-0.8.0/pammtools/R/viz-elra.R | 13 pammtools-0.8.0/pammtools/R/warnings.R | 2 pammtools-0.8.0/pammtools/R/zzz.R | 22 pammtools-0.8.0/pammtools/data/nuclear.rda |only pammtools-0.8.0/pammtools/man/add_cif.Rd | 67 pammtools-0.8.0/pammtools/man/add_hazard.Rd | 80 pammtools-0.8.0/pammtools/man/add_inspections.Rd |only pammtools-0.8.0/pammtools/man/add_surv_prob.Rd | 56 pammtools-0.8.0/pammtools/man/add_term.Rd | 2 pammtools-0.8.0/pammtools/man/add_trans_prob.Rd | 42 pammtools-0.8.0/pammtools/man/as_ped.Rd | 153 pammtools-0.8.0/pammtools/man/as_ped_cr.Rd | 149 pammtools-0.8.0/pammtools/man/compute_cumu_diff.Rd | 14 pammtools-0.8.0/pammtools/man/cumulative_coefficient.Rd | 25 pammtools-0.8.0/pammtools/man/dplyr_verbs.Rd | 144 pammtools-0.8.0/pammtools/man/geom_hazard.Rd | 2 pammtools-0.8.0/pammtools/man/geom_stepribbon.Rd | 2 pammtools-0.8.0/pammtools/man/get_Vp.Rd |only pammtools-0.8.0/pammtools/man/get_cif.Rd | 18 pammtools-0.8.0/pammtools/man/get_coefs.Rd |only pammtools-0.8.0/pammtools/man/get_cumu_hazard.Rd | 19 pammtools-0.8.0/pammtools/man/get_event_types.Rd | 20 pammtools-0.8.0/pammtools/man/get_hazard.Rd | 72 pammtools-0.8.0/pammtools/man/get_plotinfo.Rd | 6 pammtools-0.8.0/pammtools/man/get_sim_ci.Rd | 6 pammtools-0.8.0/pammtools/man/get_smooth_terms.Rd |only pammtools-0.8.0/pammtools/man/get_surv_prob.Rd | 8 pammtools-0.8.0/pammtools/man/get_term.Rd | 21 pammtools-0.8.0/pammtools/man/get_term_legacy.Rd |only pammtools-0.8.0/pammtools/man/get_terms.Rd | 43 pammtools-0.8.0/pammtools/man/gg_smooth.Rd | 18 pammtools-0.8.0/pammtools/man/gg_state_occupation.Rd |only pammtools-0.8.0/pammtools/man/hazard_ci.Rd |only pammtools-0.8.0/pammtools/man/ic_pred_cache.Rd |only pammtools-0.8.0/pammtools/man/impute_ic_cr.Rd |only pammtools-0.8.0/pammtools/man/impute_ic_times.Rd |only pammtools-0.8.0/pammtools/man/interval_censored.Rd |only pammtools-0.8.0/pammtools/man/newdata.Rd | 10 pammtools-0.8.0/pammtools/man/nuclear.Rd |only pammtools-0.8.0/pammtools/man/pamm.Rd | 18 pammtools-0.8.0/pammtools/man/pamm_ic.Rd |only pammtools-0.8.0/pammtools/man/pamm_ic_cr.Rd |only pammtools-0.8.0/pammtools/man/pamm_ic_pooling.Rd |only pammtools-0.8.0/pammtools/man/pammtools.Rd | 1 pammtools-0.8.0/pammtools/man/parse_by_level.Rd |only pammtools-0.8.0/pammtools/man/pool_pamm_fits.Rd |only pammtools-0.8.0/pammtools/man/reconstruct_cutpoints.Rd |only pammtools-0.8.0/pammtools/man/reconstruct_intlen.Rd |only pammtools-0.8.0/pammtools/man/resolve_terms.Rd |only pammtools-0.8.0/pammtools/man/rpexp.Rd | 9 pammtools-0.8.0/pammtools/man/sample_coefs.Rd |only pammtools-0.8.0/pammtools/man/sim_hazard.Rd |only pammtools-0.8.0/pammtools/man/sim_pexp.Rd | 5 pammtools-0.8.0/pammtools/man/smooth_term_rows.Rd |only pammtools-0.8.0/pammtools/man/specials.Rd | 8 pammtools-0.8.0/pammtools/man/split_data.Rd | 35 pammtools-0.8.0/pammtools/man/split_data_multistate.Rd | 35 pammtools-0.8.0/pammtools/man/strip_pamm_fit.Rd |only pammtools-0.8.0/pammtools/man/tidiers.Rd | 12 pammtools-0.8.0/pammtools/man/tidy_fixed.Rd | 3 pammtools-0.8.0/pammtools/man/tidy_smooth2d.Rd | 5 pammtools-0.8.0/pammtools/tests/testthat/Rplots.pdf |only pammtools-0.8.0/pammtools/tests/testthat/helper-fixtures.R |only pammtools-0.8.0/pammtools/tests/testthat/test-add-functions.R | 1242 ++++++- pammtools-0.8.0/pammtools/tests/testthat/test-as-ped.R | 207 - pammtools-0.8.0/pammtools/tests/testthat/test-cumulative-coefficients.R | 38 pammtools-0.8.0/pammtools/tests/testthat/test-cumulative-effect.R | 217 - pammtools-0.8.0/pammtools/tests/testthat/test-custom-constructors.R |only pammtools-0.8.0/pammtools/tests/testthat/test-ggplot-functions.R |only pammtools-0.8.0/pammtools/tests/testthat/test-interval-censored.R |only pammtools-0.8.0/pammtools/tests/testthat/test-interval-functions.R | 77 pammtools-0.8.0/pammtools/tests/testthat/test-mgcv-convenience.R | 131 pammtools-0.8.0/pammtools/tests/testthat/test-newdata.R | 203 - pammtools-0.8.0/pammtools/tests/testthat/test-pamm-fit.R | 1 pammtools-0.8.0/pammtools/tests/testthat/test-predict-functions.R | 96 pammtools-0.8.0/pammtools/tests/testthat/test-scam.R |only pammtools-0.8.0/pammtools/tests/testthat/test-simple-transform.R | 188 - pammtools-0.8.0/pammtools/tests/testthat/test-simulation.R | 128 pammtools-0.8.0/pammtools/tests/testthat/test-tidyverse-S3methods.R | 209 + pammtools-0.8.0/pammtools/tests/testthat/test-warnings.R |only 110 files changed, 6716 insertions(+), 2139 deletions(-)
Title: Functions to Streamline Statistical Analysis and Reporting
Description: Built upon popular R packages such as 'ggstatsplot' and 'ARTool', this collection offers a wide array of tools for simplifying reproducible analyses, generating high-quality visualizations, and producing 'APA'-compliant outputs. The primary goal of this package is to significantly reduce repetitive coding efforts, allowing you to focus on interpreting results. Whether you're dealing with ANOVA assumptions, reporting effect sizes, or creating publication-ready visualizations, this package makes these tasks easier.
Author: Mark Colley [aut, cre, cph]
Maintainer: Mark Colley <mark.colley@yahoo.de>
Diff between colleyRstats versions 0.1.0 dated 2026-06-11 and 0.1.1 dated 2026-06-22
DESCRIPTION | 8 MD5 | 14 NEWS.md | 7 R/paper.R | 32 R/plotting.R | 1562 +++++++++---------- R/reporting.R | 3180 ++++++++++++++++++++-------------------- man/save_paper_figure.Rd | 14 tests/testthat/test-reporting.R | 24 8 files changed, 2454 insertions(+), 2387 deletions(-)
Title: Plot Data on Oceanographic Maps using 'ggplot2'
Description: Allows plotting data on bathymetric maps using 'ggplot2'. Plotting
oceanographic spatial data is made as simple as feasible, but also flexible
for custom modifications. Data that contain geographic information from
anywhere around the globe can be plotted on maps generated by the basemap()
or qmap() functions using 'ggplot2' layers separated by the '+' operator. The
package uses spatial shape- ('sf') and raster ('stars') files, geospatial
packages for R to manipulate, and the 'ggplot2' package to plot these
files. The package ships with low-resolution spatial data files and
higher resolution files for detailed maps are stored in the
'ggOceanMapsLargeData' repository on GitHub and downloaded automatically
when needed.
Author: Mikko Vihtakari [aut, cre] ,
Roger Bivand [ctb],
Hadley Wickham [ctb]
Maintainer: Mikko Vihtakari <mikko.vihtakari@hi.no>
Diff between ggOceanMaps versions 2.3.0 dated 2026-02-10 and 3.0.0 dated 2026-06-22
ggOceanMaps-2.3.0/ggOceanMaps/man/figures |only ggOceanMaps-3.0.0/ggOceanMaps/DESCRIPTION | 21 ggOceanMaps-3.0.0/ggOceanMaps/MD5 | 73 +- ggOceanMaps-3.0.0/ggOceanMaps/NAMESPACE | 2 ggOceanMaps-3.0.0/ggOceanMaps/R/basemap.R | 52 - ggOceanMaps-3.0.0/ggOceanMaps/R/basemap_data.R | 394 ++++++++------- ggOceanMaps-3.0.0/ggOceanMaps/R/dist2land.R | 18 ggOceanMaps-3.0.0/ggOceanMaps/R/internal_functions.R | 32 - ggOceanMaps-3.0.0/ggOceanMaps/R/load_map_data.R | 26 ggOceanMaps-3.0.0/ggOceanMaps/R/map_cmd.R | 11 ggOceanMaps-3.0.0/ggOceanMaps/R/raster_bathymetry.R | 37 - ggOceanMaps-3.0.0/ggOceanMaps/R/shapefile_list.R | 6 ggOceanMaps-3.0.0/ggOceanMaps/R/vector_land.R |only ggOceanMaps-3.0.0/ggOceanMaps/R/wcs_bathymetry.R |only ggOceanMaps-3.0.0/ggOceanMaps/build/partial.rdb |binary ggOceanMaps-3.0.0/ggOceanMaps/man/FS.Rd | 4 ggOceanMaps-3.0.0/ggOceanMaps/man/LS.Rd | 4 ggOceanMaps-3.0.0/ggOceanMaps/man/auto_limits.Rd | 6 ggOceanMaps-3.0.0/ggOceanMaps/man/basemap.Rd | 47 - ggOceanMaps-3.0.0/ggOceanMaps/man/clip_shapefile.Rd | 10 ggOceanMaps-3.0.0/ggOceanMaps/man/dd_land.Rd | 2 ggOceanMaps-3.0.0/ggOceanMaps/man/dd_rbathy.Rd | 2 ggOceanMaps-3.0.0/ggOceanMaps/man/dd_to_deg.Rd | 4 ggOceanMaps-3.0.0/ggOceanMaps/man/deg_to_dd.Rd | 4 ggOceanMaps-3.0.0/ggOceanMaps/man/fdir_main_areas.Rd | 2 ggOceanMaps-3.0.0/ggOceanMaps/man/fdir_sub_areas.Rd | 2 ggOceanMaps-3.0.0/ggOceanMaps/man/geonorge_bathymetry.Rd | 10 ggOceanMaps-3.0.0/ggOceanMaps/man/ggOceanMaps-package.Rd | 7 ggOceanMaps-3.0.0/ggOceanMaps/man/ices_areas.Rd | 2 ggOceanMaps-3.0.0/ggOceanMaps/man/qmap.Rd | 8 ggOceanMaps-3.0.0/ggOceanMaps/man/raster_bathymetry.Rd | 10 ggOceanMaps-3.0.0/ggOceanMaps/man/reorder_layers.Rd | 6 ggOceanMaps-3.0.0/ggOceanMaps/man/shapefile_list.Rd | 13 ggOceanMaps-3.0.0/ggOceanMaps/man/theme_map.Rd | 6 ggOceanMaps-3.0.0/ggOceanMaps/man/transform_coord.Rd | 8 ggOceanMaps-3.0.0/ggOceanMaps/man/vector_bathymetry.Rd | 10 ggOceanMaps-3.0.0/ggOceanMaps/man/vector_land.Rd |only ggOceanMaps-3.0.0/ggOceanMaps/man/wcs_bathymetry.Rd |only 38 files changed, 462 insertions(+), 377 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-15 0.2.1
2024-10-25 0.2.0
2024-06-16 0.1.1
2023-06-06 0.1.0
Title: Watch the File System for Changes
Description: R binding for 'libfswatch', a file system monitoring library.
Watch files, or directories recursively, for changes in the
background. Log activity, or call an R function, upon every change
event.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Enrico M. Crisostomo [cph] ,
Alan Dipert [cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between watcher versions 0.1.6 dated 2026-05-08 and 0.2.0 dated 2026-06-22
watcher-0.1.6/watcher/configure.win |only watcher-0.1.6/watcher/src/Makevars.ucrt |only watcher-0.1.6/watcher/src/fswatch/CMakeLists.txt |only watcher-0.1.6/watcher/src/fswatch/libfswatch/CMakeLists.txt |only watcher-0.1.6/watcher/src/fswatch/libfswatch/libfswatch_config.in |only watcher-0.1.6/watcher/src/fswatch/libfswatch/src/libfswatch.pc.in |only watcher-0.2.0/watcher/DESCRIPTION | 10 watcher-0.2.0/watcher/MD5 | 44 - watcher-0.2.0/watcher/NEWS.md | 5 watcher-0.2.0/watcher/README.md | 1 watcher-0.2.0/watcher/cleanup | 3 watcher-0.2.0/watcher/cleanup.win | 3 watcher-0.2.0/watcher/configure | 73 +- watcher-0.2.0/watcher/configure.ucrt | 31 - watcher-0.2.0/watcher/src/Makevars.in | 70 ++ watcher-0.2.0/watcher/src/Makevars.ucrt.in |only watcher-0.2.0/watcher/src/Makevars.win | 68 +- watcher-0.2.0/watcher/src/fswatch/libfswatch/src/libfswatch/c++/fanotify_monitor.cpp | 4 watcher-0.2.0/watcher/src/fswatch/libfswatch/src/libfswatch/c++/fsevents_monitor.cpp | 5 watcher-0.2.0/watcher/src/fswatch/libfswatch/src/libfswatch/c++/inotify_monitor.cpp | 4 watcher-0.2.0/watcher/src/fswatch/libfswatch/src/libfswatch/c++/windows/win_directory_change_event.cpp | 1 watcher-0.2.0/watcher/src/fswatch/libfswatch/src/libfswatch/c++/windows_monitor.cpp | 1 watcher-0.2.0/watcher/src/fswatch/libfswatch/src/libfswatch/c/libfswatch_log.cpp | 65 -- watcher-0.2.0/watcher/src/fswatch/libfswatch/src/libfswatch/c/libfswatch_log.h | 10 watcher-0.2.0/watcher/src/fswatch/libfswatch/src/libfswatch/libfswatch_config.h |only watcher-0.2.0/watcher/tools/fsw_objects_posix.list |only watcher-0.2.0/watcher/tools/patch_libfswatch.sh |only watcher-0.2.0/watcher/tools/update_libfswatch.sh | 304 ++++++++-- 28 files changed, 498 insertions(+), 204 deletions(-)
Title: Markov Decision Processes (MDPs)
Description: Create and optimize (semi) MDPs with discrete time steps and
state space. Both hierarchical and ordinary-traditional MDPs can be
modeled.
Author: Lars Relund Nielsen [aut, cre]
Maintainer: Lars Relund Nielsen <lars@relund.dk>
Diff between MDP2 versions 2.2.2.0 dated 2026-06-12 and 3.0.0 dated 2026-06-22
MDP2-2.2.2.0/MDP2/R/randomHMDP.R |only MDP2-2.2.2.0/MDP2/inst/examples/binaryMDPWriter-ex.R |only MDP2-2.2.2.0/MDP2/inst/examples/hmpMDPWriter-ex.R |only MDP2-2.2.2.0/MDP2/inst/examples/memoryMDPWriter-ex.R |only MDP2-2.2.2.0/MDP2/man/actionIdxDf.Rd |only MDP2-2.2.2.0/MDP2/man/actionIdxMat.Rd |only MDP2-2.2.2.0/MDP2/man/actionInfo.Rd |only MDP2-2.2.2.0/MDP2/man/actionWeightMat.Rd |only MDP2-2.2.2.0/MDP2/man/binaryActionWriter.Rd |only MDP2-2.2.2.0/MDP2/man/binaryMDPWriter.Rd |only MDP2-2.2.2.0/MDP2/man/convertBinary2HMP.Rd |only MDP2-2.2.2.0/MDP2/man/convertHMP2Binary.Rd |only MDP2-2.2.2.0/MDP2/man/getBinInfoActions.Rd |only MDP2-2.2.2.0/MDP2/man/getBinInfoStates.Rd |only MDP2-2.2.2.0/MDP2/man/getHypergraph.Rd |only MDP2-2.2.2.0/MDP2/man/getInfo.Rd |only MDP2-2.2.2.0/MDP2/man/getPolicy.Rd |only MDP2-2.2.2.0/MDP2/man/getRPO.Rd |only MDP2-2.2.2.0/MDP2/man/getSteadyStatePr.Rd |only MDP2-2.2.2.0/MDP2/man/getWIdx.Rd |only MDP2-2.2.2.0/MDP2/man/hmpMDPWriter.Rd |only MDP2-2.2.2.0/MDP2/man/loadMDP.Rd |only MDP2-2.2.2.0/MDP2/man/memoryMDPWriter.Rd |only MDP2-2.2.2.0/MDP2/man/plotHypergraph.Rd |only MDP2-2.2.2.0/MDP2/man/randomHMDP.Rd |only MDP2-2.2.2.0/MDP2/man/runCalcWeights.Rd |only MDP2-2.2.2.0/MDP2/man/runPolicyIteAve.Rd |only MDP2-2.2.2.0/MDP2/man/runPolicyIteDiscount.Rd |only MDP2-2.2.2.0/MDP2/man/runValueIte.Rd |only MDP2-2.2.2.0/MDP2/man/saveMDP.Rd |only MDP2-2.2.2.0/MDP2/man/setPolicy.Rd |only MDP2-2.2.2.0/MDP2/man/stateIdxDf.Rd |only MDP2-2.2.2.0/MDP2/man/stateIdxMat.Rd |only MDP2-2.2.2.0/MDP2/man/transProbMat.Rd |only MDP2-2.2.2.0/MDP2/man/weightNames.Rd |only MDP2-3.0.0/MDP2/DESCRIPTION | 6 MDP2-3.0.0/MDP2/MD5 | 178 MDP2-3.0.0/MDP2/NAMESPACE | 46 MDP2-3.0.0/MDP2/NEWS.md | 6 MDP2-3.0.0/MDP2/R/convert.R | 630 +-- MDP2-3.0.0/MDP2/R/mdp-package.R | 11 MDP2-3.0.0/MDP2/R/mdp.R | 1160 +++-- MDP2-3.0.0/MDP2/R/plot.R | 1195 +++--- MDP2-3.0.0/MDP2/R/random_hmdp.R |only MDP2-3.0.0/MDP2/R/writer.R | 1990 +++++----- MDP2-3.0.0/MDP2/R/zzz.R | 7 MDP2-3.0.0/MDP2/inst/WORDLIST | 1 MDP2-3.0.0/MDP2/inst/doc/building.R | 484 +- MDP2-3.0.0/MDP2/inst/doc/building.Rmd | 448 +- MDP2-3.0.0/MDP2/inst/doc/building.html | 322 - 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Title: An Interface to the Reptile Database
Description: Provides tools to retrieve and summarize taxonomic information and synonymy data for reptile species using data scraped from The Reptile Database website (<https://reptile-database.reptarium.cz/>). Outputs include clean and structured data frames useful for ecological, evolutionary, and conservation research.
Author: Joao Paulo dos Santos Vieira-Alencar [aut, cre] ,
Christoph Liedtke [aut]
Maintainer: Joao Paulo dos Santos Vieira-Alencar <joaopaulo.valencar@gmail.com>
Diff between letsRept versions 1.1.1 dated 2026-03-27 and 1.1.2 dated 2026-06-22
DESCRIPTION | 8 +++---- MD5 | 42 +++++++++++++++++++------------------- NEWS.md | 12 ++++++++-- R/data_allReptiles.R | 2 - R/data_synonyms.R | 6 ++--- R/data_synonymsRef.R | 3 +- R/internal_functions.R | 4 +-- R/reptSplitCheck.R | 13 ++++++++--- R/reptTidySyn.R | 7 +++--- README.md | 19 +++++------------ build/vignette.rds |binary data/allReptiles.rda |binary data/allSynonyms.rda |binary data/allSynonymsRef.rda |binary inst/doc/case-study.html | 6 ++--- man/allReptiles.Rd | 2 - man/allSynonyms.Rd | 6 ++--- man/allSynonymsRef.Rd | 3 +- man/letsRept.Rd | 1 man/reptSplitCheck.Rd | 4 +-- man/reptTidySyn.Rd | 4 +-- tests/testthat/test-reptTidySyn.R | 5 ++-- 22 files changed, 78 insertions(+), 69 deletions(-)
Title: A 'Future' API for Parallel Processing using 'mirai'
Description: Implementation of the 'Future' API <doi:10.32614/RJ-2021-048> on top of the 'mirai' package <doi:10.5281/zenodo.7912722>. By using this package, you get to take advantage of the benefits of 'mirai' plus everything else that 'future' and the 'Futureverse' adds on top of it. It allows you to process futures, as defined by the 'future' package, in parallel out of the box, on your local machine or across remote machines. Contrary to back-ends relying on the 'parallel' package (e.g. 'multisession') and socket connections, 'mirai_cluster' and 'mirai_multisession', provided here, can run more than 125 parallel R processes. As a reminder, regardless which future backend is used by the user, the code does not have to change, it gives identical results, and behaves exactly the same.
Author: Henrik Bengtsson [aut, cre, cph] ,
Charlie Gao [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.mirai versions 0.10.1 dated 2025-07-10 and 1.0.0 dated 2026-06-22
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Title: Forecast Reconciliation
Description: Classical (bottom-up and top-down), optimal combination and heuristic
point (Di Fonzo and Girolimetto, 2023 <doi:10.1016/j.ijforecast.2021.08.004>) and
probabilistic (Girolimetto et al. 2024 <doi:10.1016/j.ijforecast.2023.10.003>)
forecast reconciliation procedures for linearly constrained time series
(e.g., hierarchical or grouped time series) in cross-sectional, temporal,
or cross-temporal frameworks.
Author: Daniele Girolimetto [aut, cre] ,
Tommaso Di Fonzo [aut] ,
Yangzhuoran Fin Yang [ctb]
Maintainer: Daniele Girolimetto <daniele.girolimetto@unipd.it>
Diff between FoReco versions 1.2.1 dated 2026-04-15 and 1.3.0 dated 2026-06-22
FoReco-1.2.1/FoReco/R/foreco_info.R |only FoReco-1.2.1/FoReco/man/FoReco2matrix.Rd |only FoReco-1.2.1/FoReco/man/new_foreco_info.Rd |only FoReco-1.2.1/FoReco/man/recoinfo.Rd |only FoReco-1.3.0/FoReco/DESCRIPTION | 8 FoReco-1.3.0/FoReco/MD5 | 163 ++++++++-------- FoReco-1.3.0/FoReco/NAMESPACE | 24 ++ FoReco-1.3.0/FoReco/NEWS.md | 22 ++ FoReco-1.3.0/FoReco/R/FoReco-package.R | 8 FoReco-1.3.0/FoReco/R/boot.R | 131 +++++++++++-- FoReco-1.3.0/FoReco/R/bottomup.R | 98 ++++++---- FoReco-1.3.0/FoReco/R/cov_cs.R | 6 FoReco-1.3.0/FoReco/R/cov_ct.R | 44 ++-- FoReco-1.3.0/FoReco/R/cov_te.R | 6 FoReco-1.3.0/FoReco/R/data.R | 4 FoReco-1.3.0/FoReco/R/foreco-class.R |only FoReco-1.3.0/FoReco/R/fun.R | 245 +++++++++++++++++-------- FoReco-1.3.0/FoReco/R/fun_export.R | 123 ++---------- FoReco-1.3.0/FoReco/R/fun_residuals.R | 34 +-- FoReco-1.3.0/FoReco/R/lcmat.R | 141 ++++++++------ FoReco-1.3.0/FoReco/R/matrix_layout.R | 98 +++++----- FoReco-1.3.0/FoReco/R/middleout.R | 87 ++++++-- FoReco-1.3.0/FoReco/R/proj_matrix.R | 175 +++++++++++++---- FoReco-1.3.0/FoReco/R/reco_fun.R | 26 +- FoReco-1.3.0/FoReco/R/reco_gauss.R | 212 ++++++++++++++++----- FoReco-1.3.0/FoReco/R/reco_heu.R | 125 ++++++++---- FoReco-1.3.0/FoReco/R/reco_lcc.R | 149 ++++++++++----- FoReco-1.3.0/FoReco/R/reco_opt.R | 139 ++++++++++---- FoReco-1.3.0/FoReco/R/reco_sample.R | 109 +++++++---- FoReco-1.3.0/FoReco/R/tools.R | 243 ++++++++++++++---------- FoReco-1.3.0/FoReco/R/topdown.R | 82 ++++++-- FoReco-1.3.0/FoReco/README.md | 2 FoReco-1.3.0/FoReco/man/aggts.Rd | 4 FoReco-1.3.0/FoReco/man/balance_hierarchy.Rd | 4 FoReco-1.3.0/FoReco/man/commat.Rd | 4 FoReco-1.3.0/FoReco/man/csboot.Rd | 35 +++ FoReco-1.3.0/FoReco/man/csbu.Rd | 13 - FoReco-1.3.0/FoReco/man/cscov.Rd | 2 FoReco-1.3.0/FoReco/man/cslcc.Rd | 9 FoReco-1.3.0/FoReco/man/csmo.Rd | 5 FoReco-1.3.0/FoReco/man/csmvn.Rd | 5 FoReco-1.3.0/FoReco/man/csprojmat.Rd | 4 FoReco-1.3.0/FoReco/man/csrec.Rd | 7 FoReco-1.3.0/FoReco/man/cssmp.Rd | 9 FoReco-1.3.0/FoReco/man/cstd.Rd | 5 FoReco-1.3.0/FoReco/man/cstools.Rd | 7 FoReco-1.3.0/FoReco/man/ctboot.Rd | 48 ++++ FoReco-1.3.0/FoReco/man/ctbu.Rd | 9 FoReco-1.3.0/FoReco/man/ctcov.Rd | 2 FoReco-1.3.0/FoReco/man/ctlcc.Rd | 9 FoReco-1.3.0/FoReco/man/ctmatrix_layouts.Rd | 4 FoReco-1.3.0/FoReco/man/ctmo.Rd | 5 FoReco-1.3.0/FoReco/man/ctmvn.Rd | 5 FoReco-1.3.0/FoReco/man/ctprojmat.Rd | 4 FoReco-1.3.0/FoReco/man/ctrec.Rd | 7 FoReco-1.3.0/FoReco/man/ctsmp.Rd | 23 +- FoReco-1.3.0/FoReco/man/cttd.Rd | 5 FoReco-1.3.0/FoReco/man/cttools.Rd | 4 FoReco-1.3.0/FoReco/man/df2aggmat.Rd | 4 FoReco-1.3.0/FoReco/man/foreco-class.Rd |only FoReco-1.3.0/FoReco/man/heuristic-reco.Rd | 7 FoReco-1.3.0/FoReco/man/itagdp.Rd | 2 FoReco-1.3.0/FoReco/man/iterec.Rd | 5 FoReco-1.3.0/FoReco/man/lcmat.Rd | 44 ++-- FoReco-1.3.0/FoReco/man/reexports.Rd |only FoReco-1.3.0/FoReco/man/residuals.Rd | 34 +-- FoReco-1.3.0/FoReco/man/set_bounds.Rd | 4 FoReco-1.3.0/FoReco/man/shrink_estim.Rd | 14 + FoReco-1.3.0/FoReco/man/shrink_oasd.Rd | 14 + FoReco-1.3.0/FoReco/man/teboot.Rd | 39 +++ FoReco-1.3.0/FoReco/man/tebu.Rd | 9 FoReco-1.3.0/FoReco/man/tecov.Rd | 2 FoReco-1.3.0/FoReco/man/telcc.Rd | 9 FoReco-1.3.0/FoReco/man/tematrix_layouts.Rd | 4 FoReco-1.3.0/FoReco/man/temo.Rd | 5 FoReco-1.3.0/FoReco/man/temvn.Rd | 7 FoReco-1.3.0/FoReco/man/teprojmat.Rd | 4 FoReco-1.3.0/FoReco/man/terec.Rd | 7 FoReco-1.3.0/FoReco/man/tesmp.Rd | 9 FoReco-1.3.0/FoReco/man/tetd.Rd | 5 FoReco-1.3.0/FoReco/man/tetools.Rd | 4 FoReco-1.3.0/FoReco/man/unbalance_hierarchy.Rd | 4 FoReco-1.3.0/FoReco/man/vndata.Rd | 2 FoReco-1.3.0/FoReco/tests/testthat/test-cs.R | 16 - FoReco-1.3.0/FoReco/tests/testthat/test-ct.R | 4 FoReco-1.3.0/FoReco/tests/testthat/test-te.R | 6 86 files changed, 1943 insertions(+), 1063 deletions(-)
Title: Chi-Squared Test for Goodness of Fit and Independence Test
Description: The chi-squared test for goodness of fit
and an independence test. In addition, the chi-squared test for the population variance,
the function for computing a confidence interval for the population variance,
and the function for calculating the population standard deviation are provided.
Author: Atchanut Rattanalertnusorn [cre, aut],
Jiranan Choojai [aut],
Chutima Philadee [aut],
Kittipong Klinjan [aut],
Issaraporn Thiamsorn [aut]
Maintainer: Atchanut Rattanalertnusorn <atchanut_r@rmutt.ac.th>
Diff between Mychisq versions 0.1.3 dated 2022-03-16 and 1.0.0 dated 2026-06-22
DESCRIPTION | 12 +++++++----- MD5 | 29 +++++++++++++++++++---------- NAMESPACE | 5 +++++ R/gofchisq.R | 14 +++++++++----- R/indchisq.R | 16 ++++++++++------ R/plotchisq.R | 6 +++--- R/sigmaCI.R |only R/sigmatest.R |only R/varCI.R |only man/gofchisq.Rd | 11 ++++++----- man/indchisq.Rd | 11 ++++++----- man/plotchisq.Rd | 6 +++--- man/sigmaCI.Rd |only man/sigmatest.Rd |only man/varCI.Rd |only tests/testthat.R | 16 ++++++++++++---- tests/testthat/Rplots.pdf |binary tests/testthat/test-sigmaCI.R |only tests/testthat/test-sigmatest.R |only tests/testthat/test-varCI.R |only 20 files changed, 80 insertions(+), 46 deletions(-)
Title: Imputation Procedures and Quality Tests for Fuzzy Data
Description: Special procedures for the imputation of missing fuzzy numbers are still underdeveloped. The goal of the package is to provide the new d-imputation method (DIMP for short, Romaniuk, M. and Grzegorzewski, P. (2023) "Fuzzy Data Imputation with DIMP and FGAIN" RB/23/2023) and covert some classical ones applied in R packages ('missForest','miceRanger','knn') for use with fuzzy datasets. Additionally, specially tailored benchmarking tests are provided to check and compare these imputation procedures with fuzzy datasets.
Author: Maciej Romaniuk [cre, aut]
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between FuzzyImputationTest versions 0.5.2 dated 2025-10-29 and 0.5.5 dated 2026-06-22
DESCRIPTION | 11 ++--- MD5 | 25 +++++++----- R/FuzzyImputation.R | 10 ++++ R/ImputationDimp.R | 4 + R/MethodsComparison.R | 9 +++- README.md | 53 ++++++++++++++++---------- build |only inst |only man/FuzzyImputation.Rd | 9 +++- man/ImputationDimp.Rd | 4 + man/MethodsComparison.Rd | 7 +++ man/methodNames.Rd | 5 -- tests/testthat/_snaps/MethodsComparison.md | 59 +++-------------------------- vignettes |only 14 files changed, 102 insertions(+), 94 deletions(-)
More information about FuzzyImputationTest at CRAN
Permanent link
Title: Comparative Cohort Method with Large Scale Propensity and
Outcome Models
Description: Functions for performing comparative cohort studies
in an observational database in the Observational Medical Outcomes Partnership (OMOP) Common
Data Model. Can extract all necessary data from a database. This implements large-scale
propensity scores (LSPS) as described in Tian et al. (2018) <doi:10.1093/ije/dyy120>,
using a large set of covariates, including for example all drugs, diagnoses, procedures,
as well as age, comorbidity indexes, etc. Large scale regularized regression is used to
fit the propensity and outcome models as described in Suchard et al. (2013) <doi:10.1145/2414416.2414791>.
Functions are included for trimming, stratifying, (variable and fixed ratio) matching and
weighting by propensity scores, as well as diagnostic functions, such as propensity score distribution
plots and plots showing covariate balance before and after matching and/or trimming. Supported
outcome models are (conditional) logistic regression, (conditional) Poisson regression, and
(stra [...truncated...]
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Patrick Ryan [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between CohortMethod versions 6.0.2 dated 2026-05-08 and 6.0.3 dated 2026-06-22
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 8 ++++++++ R/Balance.R | 16 ++++++++-------- inst/doc/MultipleAnalyses.pdf |binary inst/doc/ResultsSchema.html | 4 ++-- inst/doc/SingleStudies.pdf |binary man/CohortMethod-package.Rd | 1 + man/CohortMethodData-class.Rd | 2 +- 9 files changed, 33 insertions(+), 24 deletions(-)
Title: Automated Soil Profile Classification per WRB 2022, 'SiBCS' 5
and USDA Soil Taxonomy 13
Description: Implements deterministic classification keys for the World
Reference Base for Soil Resources 2022 (4th edition) and the Brazilian
System of Soil Classification ('SiBCS', 5th edition). Provides a unified
profile representation with explicit per-attribute provenance, multimodal
extraction from field reports and photos via vision-language models,
spatial priors from 'SoilGrids' and national soil maps, and gap-filling of
soil attributes from Vis-NIR or MIR spectra via the Open Soil Spectral
Library ('OSSL'). The taxonomic key itself is never delegated to a language
model; LLMs are restricted to schema-validated extraction. Each
classification result reports a key trace, a provenance-aware evidence
grade, and ambiguities that further measurement would resolve.
Author: Hugo Rodrigues [aut, cre]
Maintainer: Hugo Rodrigues <rodrigues.machado.hugo@gmail.com>
Diff between soilKey versions 0.9.97 dated 2026-05-19 and 0.9.155 dated 2026-06-22
soilKey-0.9.155/soilKey/DESCRIPTION | 46 soilKey-0.9.155/soilKey/MD5 | 1637 ++---- soilKey-0.9.155/soilKey/NAMESPACE | 611 -- soilKey-0.9.155/soilKey/NEWS.md | 2350 +++++++++- soilKey-0.9.155/soilKey/R/afsp.R | 10 soilKey-0.9.155/soilKey/R/aqp-interop.R | 29 soilKey-0.9.155/soilKey/R/audit-argic-films.R | 13 soilKey-0.9.155/soilKey/R/bdsolos.R | 65 soilKey-0.9.155/soilKey/R/benchmark-bdsolos.R | 24 soilKey-0.9.155/soilKey/R/benchmark-kssl-nasis.R | 2 soilKey-0.9.155/soilKey/R/benchmark-loaders.R | 29 soilKey-0.9.155/soilKey/R/benchmark-lucas-2018.R | 44 soilKey-0.9.155/soilKey/R/benchmark-performance.R | 36 soilKey-0.9.155/soilKey/R/benchmark-suite.R |only soilKey-0.9.155/soilKey/R/benchmark-unified.R | 354 + soilKey-0.9.155/soilKey/R/canonical-kst13.R | 5 soilKey-0.9.155/soilKey/R/canonical-references.R | 3 soilKey-0.9.155/soilKey/R/class-ClassificationResult.R | 6 soilKey-0.9.155/soilKey/R/class-PedonRecord.R | 6 soilKey-0.9.155/soilKey/R/classify-all.R | 23 soilKey-0.9.155/soilKey/R/classify-from-documents.R | 46 soilKey-0.9.155/soilKey/R/classify-from-photos.R |only soilKey-0.9.155/soilKey/R/classify-smartsolos.R | 47 soilKey-0.9.155/soilKey/R/classify-with-uncertainty.R |only soilKey-0.9.155/soilKey/R/coverage.R |only soilKey-0.9.155/soilKey/R/data-ossl-demo.R | 4 soilKey-0.9.155/soilKey/R/diagnostics-alfisols-usda.R | 8 soilKey-0.9.155/soilKey/R/diagnostics-andisols-usda.R | 44 soilKey-0.9.155/soilKey/R/diagnostics-aridisols-usda.R | 16 soilKey-0.9.155/soilKey/R/diagnostics-atributos-sibcs.R | 185 soilKey-0.9.155/soilKey/R/diagnostics-conditions-usda.R | 10 soilKey-0.9.155/soilKey/R/diagnostics-entisols-usda.R | 37 soilKey-0.9.155/soilKey/R/diagnostics-epipedons-usda.R | 12 soilKey-0.9.155/soilKey/R/diagnostics-gelisols-usda.R | 68 soilKey-0.9.155/soilKey/R/diagnostics-histosols-usda.R | 44 soilKey-0.9.155/soilKey/R/diagnostics-horizons-sibcs.R | 310 + soilKey-0.9.155/soilKey/R/diagnostics-horizons-usda.R | 2 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soilKey-0.9.155/soilKey/R/diagnostics-ultisols-usda.R | 78 soilKey-0.9.155/soilKey/R/diagnostics-vertisols-usda.R | 96 soilKey-0.9.155/soilKey/R/esdb-raster.R | 28 soilKey-0.9.155/soilKey/R/evidence-grade-per-attribute.R |only soilKey-0.9.155/soilKey/R/extdata-lazy-fetch.R | 19 soilKey-0.9.155/soilKey/R/familia-sibcs.R | 36 soilKey-0.9.155/soilKey/R/familia-usda.R |only soilKey-0.9.155/soilKey/R/febr.R | 35 soilKey-0.9.155/soilKey/R/gapfill.R |only soilKey-0.9.155/soilKey/R/harmonize-depths.R | 6 soilKey-0.9.155/soilKey/R/json-schema.R | 38 soilKey-0.9.155/soilKey/R/key-sibcs.R | 22 soilKey-0.9.155/soilKey/R/key-usda.R | 67 soilKey-0.9.155/soilKey/R/key-wrb2022.R | 69 soilKey-0.9.155/soilKey/R/perturbation-scales.R |only soilKey-0.9.155/soilKey/R/qualifiers-wrb2022-v091.R | 139 soilKey-0.9.155/soilKey/R/qualifiers-wrb2022-v091b.R | 110 soilKey-0.9.155/soilKey/R/qualifiers-wrb2022-v091c.R | 100 soilKey-0.9.155/soilKey/R/qualifiers-wrb2022-v091de.R | 8 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soilKey-0.9.155/soilKey/R/validate-horizon-geometry.R |only soilKey-0.9.155/soilKey/R/validate-rules.R |only soilKey-0.9.155/soilKey/R/vlm-extract.R | 12 soilKey-0.9.155/soilKey/R/vlm-mock.R | 2 soilKey-0.9.155/soilKey/R/vlm-prompts.R | 4 soilKey-0.9.155/soilKey/R/vlm-providers.R | 28 soilKey-0.9.155/soilKey/R/vlm-schemas.R | 12 soilKey-0.9.155/soilKey/R/vlm-validate.R | 12 soilKey-0.9.155/soilKey/R/wosis-cache.R | 60 soilKey-0.9.155/soilKey/R/zzz.R | 6 soilKey-0.9.155/soilKey/README.md | 110 soilKey-0.9.155/soilKey/build/vignette.rds |binary soilKey-0.9.155/soilKey/inst/benchmarks/reports/benchmark_suite_v09106_2026-06-11.md |only soilKey-0.9.155/soilKey/inst/benchmarks/reports/benchmark_suite_v09107_2026-06-11.md |only soilKey-0.9.155/soilKey/inst/benchmarks/reports/benchmark_suite_v09110.md |only soilKey-0.9.155/soilKey/inst/benchmarks/reports/benchmark_suite_v09112.md |only soilKey-0.9.155/soilKey/inst/benchmarks/reports/calcic_enrichment_v09139.md |only 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soilKey-0.9.155/soilKey/tests/testthat/test-spatial-sanity.R | 7 soilKey-0.9.155/soilKey/tests/testthat/test-spatial-soilgrids.R | 7 soilKey-0.9.155/soilKey/tests/testthat/test-spectra-fetch-labels.R | 3 soilKey-0.9.155/soilKey/tests/testthat/test-spectra-fetch.R | 10 soilKey-0.9.155/soilKey/tests/testthat/test-spectra-neighbours.R | 6 soilKey-0.9.155/soilKey/tests/testthat/test-spectra-ossl.R | 14 soilKey-0.9.155/soilKey/tests/testthat/test-spectra-predict.R | 10 soilKey-0.9.155/soilKey/tests/testthat/test-spectra-preprocess.R | 10 soilKey-0.9.155/soilKey/tests/testthat/test-usda-colour-subgroups.R |only soilKey-0.9.155/soilKey/tests/testthat/test-usda-intergrade-subgroups.R |only soilKey-0.9.155/soilKey/tests/testthat/test-usda-predicate-fixes.R |only soilKey-0.9.155/soilKey/tests/testthat/test-v0100-uncertainty.R |only soilKey-0.9.155/soilKey/tests/testthat/test-v09101-shiny-map.R |only soilKey-0.9.155/soilKey/tests/testthat/test-v09102-shiny-map-batch.R |only 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soilKey-0.9.155/soilKey/tests/testthat/test-v0949-lucas-2018.R | 11 soilKey-0.9.155/soilKey/tests/testthat/test-v0950-lucas-fills.R | 14 soilKey-0.9.155/soilKey/tests/testthat/test-v0952-vignette-pt.R | 16 soilKey-0.9.155/soilKey/tests/testthat/test-v0953-performance.R | 15 soilKey-0.9.155/soilKey/tests/testthat/test-v0954-smartsolos-api.R | 14 soilKey-0.9.155/soilKey/tests/testthat/test-v0955-bdsolos.R | 23 soilKey-0.9.155/soilKey/tests/testthat/test-v0960-benchmark-bdsolos.R | 15 soilKey-0.9.155/soilKey/tests/testthat/test-v0962-aqp-interop.R | 12 soilKey-0.9.155/soilKey/tests/testthat/test-v0963-qualifiers.R | 22 soilKey-0.9.155/soilKey/tests/testthat/test-v0964-qualifiers.R | 16 soilKey-0.9.155/soilKey/tests/testthat/test-v0965-engine-and-tier3.R | 10 soilKey-0.9.155/soilKey/tests/testthat/test-v0973-wosis-stratified.R | 4 soilKey-0.9.155/soilKey/tests/testthat/test-v0975-kssl-nasis.R | 5 soilKey-0.9.155/soilKey/tests/testthat/test-v0977-afsp-and-vertisol-routing.R | 14 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soilKey-0.9.97/soilKey/man/dot-apply_nasis_tiebreaker.Rd |only soilKey-0.9.97/soilKey/man/dot-argic_derived_aggregate.Rd |only soilKey-0.9.97/soilKey/man/dot-argic_derived_negative.Rd |only soilKey-0.9.97/soilKey/man/dot-argic_strong_films_match.Rd |only soilKey-0.9.97/soilKey/man/dot-bdsolos_detect_sep.Rd |only soilKey-0.9.97/soilKey/man/dot-bdsolos_dms_to_decimal.Rd |only soilKey-0.9.97/soilKey/man/dot-bdsolos_eval.Rd |only soilKey-0.9.97/soilKey/man/dot-bdsolos_find_header_line.Rd |only soilKey-0.9.97/soilKey/man/dot-bdsolos_match_column.Rd |only soilKey-0.9.97/soilKey/man/dot-bdsolos_match_taxon_column.Rd |only soilKey-0.9.97/soilKey/man/dot-bdsolos_mosqueado_to_pct.Rd |only soilKey-0.9.97/soilKey/man/dot-bdsolos_norm.Rd |only soilKey-0.9.97/soilKey/man/dot-bdsolos_rows_to_horizons.Rd |only soilKey-0.9.97/soilKey/man/dot-benchmark_one_dataset_one_system.Rd |only soilKey-0.9.97/soilKey/man/dot-build_lucas_pedon_2018.Rd |only soilKey-0.9.97/soilKey/man/dot-build_pedon_point_row.Rd 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soilKey-0.9.97/soilKey/man/dot-haversine_km.Rd |only soilKey-0.9.97/soilKey/man/dot-html_classification_card.Rd |only soilKey-0.9.97/soilKey/man/dot-html_escape.Rd |only soilKey-0.9.97/soilKey/man/dot-html_head.Rd |only soilKey-0.9.97/soilKey/man/dot-html_horizons_table.Rd |only soilKey-0.9.97/soilKey/man/dot-html_provenance_table.Rd |only soilKey-0.9.97/soilKey/man/dot-html_site_header.Rd |only soilKey-0.9.97/soilKey/man/dot-html_summary_table.Rd |only soilKey-0.9.97/soilKey/man/dot-kssl_alias_reference_wrb.Rd |only soilKey-0.9.97/soilKey/man/dot-kst13_load_cached.Rd |only soilKey-0.9.97/soilKey/man/dot-kst13_path.Rd |only soilKey-0.9.97/soilKey/man/dot-lazy_fetch_local_path.Rd |only soilKey-0.9.97/soilKey/man/dot-lazy_fetch_readRDS.Rd |only soilKey-0.9.97/soilKey/man/dot-lazy_fetch_url.Rd |only soilKey-0.9.97/soilKey/man/dot-lucas_numeric.Rd |only soilKey-0.9.97/soilKey/man/dot-make_synth_perf_pedon.Rd |only soilKey-0.9.97/soilKey/man/dot-merge_confusion.Rd |only soilKey-0.9.97/soilKey/man/dot-modal_by_overlap.Rd |only soilKey-0.9.97/soilKey/man/dot-mollic_derived_aggregate.Rd |only soilKey-0.9.97/soilKey/man/dot-mollic_derived_negative.Rd |only soilKey-0.9.97/soilKey/man/dot-normalise_results.Rd |only soilKey-0.9.97/soilKey/man/dot-ossl_property_ranges.Rd |only soilKey-0.9.97/soilKey/man/dot-parse_febr_munsell.Rd |only soilKey-0.9.97/soilKey/man/dot-parse_febr_munsell_vec.Rd |only soilKey-0.9.97/soilKey/man/dot-per_class_from_confusion.Rd |only soilKey-0.9.97/soilKey/man/dot-predict_ossl_mbl_resemble.Rd |only soilKey-0.9.97/soilKey/man/dot-predict_synthetic.Rd |only soilKey-0.9.97/soilKey/man/dot-q_stub_na.Rd |only soilKey-0.9.97/soilKey/man/dot-q_weighted_mean.Rd |only soilKey-0.9.97/soilKey/man/dot-q_within_depth.Rd |only soilKey-0.9.97/soilKey/man/dot-query_nearest_wosis_wrb.Rd |only soilKey-0.9.97/soilKey/man/dot-redape_canonical_label.Rd |only soilKey-0.9.97/soilKey/man/dot-redape_compose_ref.Rd |only soilKey-0.9.97/soilKey/man/dot-redape_extract_pred.Rd |only soilKey-0.9.97/soilKey/man/dot-redape_horizon_to_soilkey.Rd |only soilKey-0.9.97/soilKey/man/dot-redape_item_to_pedon.Rd |only soilKey-0.9.97/soilKey/man/dot-redape_pluralise_pt.Rd |only soilKey-0.9.97/soilKey/man/dot-redape_read_json.Rd |only soilKey-0.9.97/soilKey/man/dot-redape_strip_accents.Rd |only soilKey-0.9.97/soilKey/man/dot-reduce_for_neighbours.Rd |only soilKey-0.9.97/soilKey/man/dot-resolve_region.Rd |only soilKey-0.9.97/soilKey/man/dot-rmd_classification_block.Rd |only soilKey-0.9.97/soilKey/man/dot-rmd_header.Rd |only soilKey-0.9.97/soilKey/man/dot-rmd_horizons_block.Rd |only soilKey-0.9.97/soilKey/man/dot-rmd_site_block.Rd |only soilKey-0.9.97/soilKey/man/dot-rmd_summary_block.Rd |only soilKey-0.9.97/soilKey/man/dot-rsg_name_for_system.Rd |only soilKey-0.9.97/soilKey/man/dot-seed_from_matrix.Rd |only soilKey-0.9.97/soilKey/man/dot-sg1.Rd |only soilKey-0.9.97/soilKey/man/dot-sg_coefficients.Rd |only soilKey-0.9.97/soilKey/man/dot-smartsolos_clay_films_amt.Rd |only soilKey-0.9.97/soilKey/man/dot-smartsolos_clay_films_strength.Rd |only soilKey-0.9.97/soilKey/man/dot-smartsolos_pedon_to_payload.Rd |only soilKey-0.9.97/soilKey/man/dot-smartsolos_response_to_result.Rd |only soilKey-0.9.97/soilKey/man/dot-smartsolos_struct_grade.Rd |only soilKey-0.9.97/soilKey/man/dot-smartsolos_struct_size.Rd |only soilKey-0.9.97/soilKey/man/dot-smartsolos_struct_type.Rd |only soilKey-0.9.97/soilKey/man/dot-snv.Rd |only soilKey-0.9.97/soilKey/man/dot-soilgrids_scale.Rd |only soilKey-0.9.97/soilKey/man/dot-soilkey_version.Rd |only soilKey-0.9.97/soilKey/man/dot-subtest_result.Rd |only soilKey-0.9.97/soilKey/man/dot-three_valued_all.Rd |only soilKey-0.9.97/soilKey/man/dot-typical_attribute_table.Rd |only soilKey-0.9.97/soilKey/man/dot-wrb_canonical_plural.Rd |only soilKey-0.9.97/soilKey/man/dot-wrb_to_sibcs_distribution.Rd |only soilKey-0.9.97/soilKey/man/dot-wrb_to_sibcs_modal_ordem.Rd |only soilKey-0.9.97/soilKey/man/dot-wrb_to_usda_modal_order.Rd |only soilKey-0.9.97/soilKey/man/dot-write_pedon_schema_to_disk.Rd |only soilKey-0.9.97/soilKey/man/duric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/duripan_usda.Rd |only soilKey-0.9.97/soilKey/man/dystric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/ecec_per_clay.Rd |only soilKey-0.9.97/soilKey/man/entic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/entisol_usda.Rd |only soilKey-0.9.97/soilKey/man/episaturation_usda.Rd |only soilKey-0.9.97/soilKey/man/espodossolo.Rd |only soilKey-0.9.97/soilKey/man/espodossolo_ferri_humiluvico.Rd |only soilKey-0.9.97/soilKey/man/espodossolo_ferriluvico.Rd |only soilKey-0.9.97/soilKey/man/espodossolo_humiluvico.Rd |only soilKey-0.9.97/soilKey/man/eutric_inceptisol_usda.Rd |only soilKey-0.9.97/soilKey/man/eutric_oxisol_usda.Rd |only soilKey-0.9.97/soilKey/man/eutric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/familia_andico.Rd |only soilKey-0.9.97/soilKey/man/familia_atividade_argila.Rd |only soilKey-0.9.97/soilKey/man/familia_constituicao_esqueletica.Rd |only soilKey-0.9.97/soilKey/man/familia_distribuicao_cascalhos.Rd |only soilKey-0.9.97/soilKey/man/familia_grupamento_textural.Rd |only soilKey-0.9.97/soilKey/man/familia_label.Rd |only soilKey-0.9.97/soilKey/man/familia_mineralogia_areia.Rd |only soilKey-0.9.97/soilKey/man/familia_mineralogia_argila_latossolo.Rd |only soilKey-0.9.97/soilKey/man/familia_organossolo_espessura.Rd |only soilKey-0.9.97/soilKey/man/familia_organossolo_lenhosidade.Rd |only soilKey-0.9.97/soilKey/man/familia_organossolo_material_subjacente.Rd |only soilKey-0.9.97/soilKey/man/familia_oxidos_ferro.Rd |only soilKey-0.9.97/soilKey/man/familia_prefixo_profundidade.Rd |only soilKey-0.9.97/soilKey/man/familia_saturacao_aluminio.Rd |only soilKey-0.9.97/soilKey/man/familia_saturacao_bases.Rd |only soilKey-0.9.97/soilKey/man/familia_subgrupamento_textural.Rd |only soilKey-0.9.97/soilKey/man/familia_tipo_horizonte_superficial.Rd |only soilKey-0.9.97/soilKey/man/ferric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/fibric_predominant_usda.Rd |only soilKey-0.9.97/soilKey/man/fibric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/find_ambiguities.Rd |only soilKey-0.9.97/soilKey/man/find_or_append_horizon.Rd |only soilKey-0.9.97/soilKey/man/fluvaquentic_usda.Rd |only soilKey-0.9.97/soilKey/man/fluvent_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/fluventic_usda.Rd |only soilKey-0.9.97/soilKey/man/fmt_num.Rd |only soilKey-0.9.97/soilKey/man/folist_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/folistic_epipedon_usda.Rd |only soilKey-0.9.97/soilKey/man/folistic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/fragipan_usda.Rd |only soilKey-0.9.97/soilKey/man/frasic_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/fulvic_andisol_usda.Rd |only soilKey-0.9.97/soilKey/man/gelisol_usda.Rd |only soilKey-0.9.97/soilKey/man/glacic_layer_usda.Rd |only soilKey-0.9.97/soilKey/man/gleissolo.Rd |only soilKey-0.9.97/soilKey/man/gleissolo_haplico.Rd |only soilKey-0.9.97/soilKey/man/gleissolo_melanico.Rd |only soilKey-0.9.97/soilKey/man/gleissolo_salico.Rd |only soilKey-0.9.97/soilKey/man/gleissolo_tiomorfico.Rd |only soilKey-0.9.97/soilKey/man/glossic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/grossarenic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/gypsic_horizon_usda.Rd |only soilKey-0.9.97/soilKey/man/gypsic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/halaquept_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/halic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/hemic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/histel_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/histic_epipedon_usda.Rd |only soilKey-0.9.97/soilKey/man/histic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/histosol_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/histosol_usda.Rd |only soilKey-0.9.97/soilKey/man/horizon_simple_attr_map.Rd |only soilKey-0.9.97/soilKey/man/horizonte_A_antropico.Rd |only soilKey-0.9.97/soilKey/man/horizonte_A_chernozemico.Rd |only soilKey-0.9.97/soilKey/man/horizonte_A_fraco.Rd |only soilKey-0.9.97/soilKey/man/horizonte_A_humico.Rd |only soilKey-0.9.97/soilKey/man/horizonte_A_moderado.Rd |only soilKey-0.9.97/soilKey/man/horizonte_A_proeminente.Rd |only soilKey-0.9.97/soilKey/man/horizonte_E_albico.Rd |only soilKey-0.9.97/soilKey/man/horizonte_calcico.Rd |only soilKey-0.9.97/soilKey/man/horizonte_concrecionario.Rd |only soilKey-0.9.97/soilKey/man/horizonte_glei.Rd |only soilKey-0.9.97/soilKey/man/horizonte_histico.Rd |only soilKey-0.9.97/soilKey/man/horizonte_litoplintico.Rd |only soilKey-0.9.97/soilKey/man/horizonte_petrocalcico.Rd |only soilKey-0.9.97/soilKey/man/horizonte_plintico.Rd |only soilKey-0.9.97/soilKey/man/horizonte_sulfurico.Rd |only soilKey-0.9.97/soilKey/man/horizonte_vertico.Rd |only soilKey-0.9.97/soilKey/man/humic_andisol_usda.Rd |only soilKey-0.9.97/soilKey/man/humic_inceptisol_usda.Rd |only soilKey-0.9.97/soilKey/man/humic_oxisol_usda.Rd |only soilKey-0.9.97/soilKey/man/humic_spodic_usda.Rd |only soilKey-0.9.97/soilKey/man/humic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/humilluvic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/humult_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/hydraquent_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/hydric_andisol_usda.Rd |only soilKey-0.9.97/soilKey/man/hydric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/inceptisol_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/inceptisol_usda.Rd |only soilKey-0.9.97/soilKey/man/is_loamy_sand_or_finer.Rd |only soilKey-0.9.97/soilKey/man/is_sandy_loam_or_finer.Rd |only soilKey-0.9.97/soilKey/man/kandic_horizon_usda.Rd |only soilKey-0.9.97/soilKey/man/kandic_oxisol_usda.Rd |only soilKey-0.9.97/soilKey/man/kanhapl_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/lamellic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/latossolo.Rd |only soilKey-0.9.97/soilKey/man/latossolo_amarelo.Rd |only soilKey-0.9.97/soilKey/man/latossolo_bruno.Rd |only soilKey-0.9.97/soilKey/man/latossolo_ki_kr.Rd |only soilKey-0.9.97/soilKey/man/latossolo_vermelho.Rd |only soilKey-0.9.97/soilKey/man/latossolo_vermelho_amarelo.Rd |only soilKey-0.9.97/soilKey/man/limnic_usda.Rd |only soilKey-0.9.97/soilKey/man/lithic_contact_usda.Rd |only soilKey-0.9.97/soilKey/man/load_prompt.Rd |only soilKey-0.9.97/soilKey/man/load_schema.Rd |only soilKey-0.9.97/soilKey/man/luvissolo.Rd |only soilKey-0.9.97/soilKey/man/luvissolo_cromico.Rd |only soilKey-0.9.97/soilKey/man/luvissolo_haplico.Rd |only soilKey-0.9.97/soilKey/man/make_empty_provenance.Rd |only soilKey-0.9.97/soilKey/man/melanic_andisol_usda.Rd |only soilKey-0.9.97/soilKey/man/melanic_epipedon_usda.Rd |only soilKey-0.9.97/soilKey/man/mollic_epipedon_usda.Rd |only soilKey-0.9.97/soilKey/man/mollisol_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/mollisol_usda.Rd |only soilKey-0.9.97/soilKey/man/natric_horizon_usda.Rd |only soilKey-0.9.97/soilKey/man/natric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/neossolo.Rd |only soilKey-0.9.97/soilKey/man/neossolo_fluvico.Rd |only soilKey-0.9.97/soilKey/man/neossolo_litolico.Rd |only soilKey-0.9.97/soilKey/man/neossolo_quartzarenico.Rd |only soilKey-0.9.97/soilKey/man/neossolo_regolitico.Rd |only soilKey-0.9.97/soilKey/man/nitossolo.Rd |only soilKey-0.9.97/soilKey/man/nitossolo_bruno.Rd |only soilKey-0.9.97/soilKey/man/nitossolo_haplico.Rd |only soilKey-0.9.97/soilKey/man/nitossolo_vermelho.Rd |only soilKey-0.9.97/soilKey/man/nitric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/normalize_prior.Rd |only soilKey-0.9.97/soilKey/man/ochric_epipedon_usda.Rd |only soilKey-0.9.97/soilKey/man/organossolo.Rd |only 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|only soilKey-0.9.97/soilKey/man/resolve_assigned_rsg_code.Rd |only soilKey-0.9.97/soilKey/man/rhodic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/run_single_test.Rd |only soilKey-0.9.97/soilKey/man/ruptic_histic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/ruptic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/salic_horizon_usda.Rd |only soilKey-0.9.97/soilKey/man/salic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/sapric_predominant_usda.Rd |only soilKey-0.9.97/soilKey/man/sapric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/schema_path.Rd |only soilKey-0.9.97/soilKey/man/smr_aridic_usda.Rd |only soilKey-0.9.97/soilKey/man/smr_torric_usda.Rd |only soilKey-0.9.97/soilKey/man/smr_udic_usda.Rd |only soilKey-0.9.97/soilKey/man/smr_ustic_usda.Rd |only soilKey-0.9.97/soilKey/man/smr_xeric_usda.Rd |only soilKey-0.9.97/soilKey/man/sodic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/soil_moisture_regime_usda.Rd |only soilKey-0.9.97/soilKey/man/soil_temperature_regime_usda.Rd |only soilKey-0.9.97/soilKey/man/soilgrids_buffer_vect.Rd |only soilKey-0.9.97/soilKey/man/sombric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/sphagnic_usda.Rd |only soilKey-0.9.97/soilKey/man/spodic_andisol_usda.Rd |only soilKey-0.9.97/soilKey/man/spodic_horizon_usda.Rd |only soilKey-0.9.97/soilKey/man/spodic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/spodosol_usda.Rd |only soilKey-0.9.97/soilKey/man/str_cryic_usda.Rd |only soilKey-0.9.97/soilKey/man/str_gelic_usda.Rd |only soilKey-0.9.97/soilKey/man/strip_code_fence.Rd |only soilKey-0.9.97/soilKey/man/sulfic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/sulfidic_materials_usda.Rd |only soilKey-0.9.97/soilKey/man/sulfuric_horizon_usda.Rd |only soilKey-0.9.97/soilKey/man/terric_usda.Rd |only soilKey-0.9.97/soilKey/man/test_abrupt_textural_change.Rd |only soilKey-0.9.97/soilKey/man/test_al_saturation_above.Rd |only soilKey-0.9.97/soilKey/man/test_al_saturation_below.Rd |only soilKey-0.9.97/soilKey/man/test_alfe_ox_above.Rd |only soilKey-0.9.97/soilKey/man/test_andic_alfe.Rd |only soilKey-0.9.97/soilKey/man/test_anthric_horizon_properties.Rd |only soilKey-0.9.97/soilKey/man/test_artefacts_concentration.Rd |only soilKey-0.9.97/soilKey/man/test_bs_above.Rd |only soilKey-0.9.97/soilKey/man/test_bs_below.Rd |only soilKey-0.9.97/soilKey/man/test_bulk_density_below.Rd |only soilKey-0.9.97/soilKey/man/test_caco3_concentration.Rd |only soilKey-0.9.97/soilKey/man/test_carbonates_present.Rd |only soilKey-0.9.97/soilKey/man/test_caso4_concentration.Rd |only soilKey-0.9.97/soilKey/man/test_cec_per_clay.Rd |only soilKey-0.9.97/soilKey/man/test_cec_per_clay_above.Rd |only soilKey-0.9.97/soilKey/man/test_cemented.Rd |only soilKey-0.9.97/soilKey/man/test_chernic_color.Rd |only soilKey-0.9.97/soilKey/man/test_claric_munsell.Rd |only soilKey-0.9.97/soilKey/man/test_clay_above.Rd |only soilKey-0.9.97/soilKey/man/test_clay_decreases_with_depth.Rd |only soilKey-0.9.97/soilKey/man/test_clay_increase_argic.Rd |only soilKey-0.9.97/soilKey/man/test_coarse_fragments_above.Rd |only soilKey-0.9.97/soilKey/man/test_coarse_texture_throughout.Rd |only soilKey-0.9.97/soilKey/man/test_designation_pattern.Rd |only soilKey-0.9.97/soilKey/man/test_duripan_concentration.Rd |only soilKey-0.9.97/soilKey/man/test_ec_concentration.Rd |only soilKey-0.9.97/soilKey/man/test_ecec_per_clay.Rd |only soilKey-0.9.97/soilKey/man/test_esp_above.Rd |only soilKey-0.9.97/soilKey/man/test_fe_dcb_above.Rd |only soilKey-0.9.97/soilKey/man/test_ferralic_texture.Rd |only soilKey-0.9.97/soilKey/man/test_ferralic_thickness.Rd |only soilKey-0.9.97/soilKey/man/test_fluvic_stratification.Rd |only soilKey-0.9.97/soilKey/man/test_geomembrane_within_depth.Rd |only soilKey-0.9.97/soilKey/man/test_gleyic_features.Rd |only soilKey-0.9.97/soilKey/man/test_minimum_thickness.Rd |only soilKey-0.9.97/soilKey/man/test_mollic_base_saturation.Rd |only soilKey-0.9.97/soilKey/man/test_mollic_color.Rd |only soilKey-0.9.97/soilKey/man/test_mollic_organic_carbon.Rd |only soilKey-0.9.97/soilKey/man/test_mollic_structure.Rd |only soilKey-0.9.97/soilKey/man/test_mollic_thickness.Rd |only soilKey-0.9.97/soilKey/man/test_not_albeluvic.Rd |only soilKey-0.9.97/soilKey/man/test_numeric_above.Rd |only soilKey-0.9.97/soilKey/man/test_oc_above.Rd |only soilKey-0.9.97/soilKey/man/test_oc_cumulative_thickness.Rd |only soilKey-0.9.97/soilKey/man/test_pattern_match.Rd |only soilKey-0.9.97/soilKey/man/test_permafrost_temp_below.Rd |only soilKey-0.9.97/soilKey/man/test_ph_below.Rd |only soilKey-0.9.97/soilKey/man/test_phosphate_retention_above.Rd |only soilKey-0.9.97/soilKey/man/test_plinthite_concentration.Rd |only soilKey-0.9.97/soilKey/man/test_polyhedral_or_nutty_structure.Rd |only soilKey-0.9.97/soilKey/man/test_reducing_conditions.Rd |only soilKey-0.9.97/soilKey/man/test_salic_product.Rd |only soilKey-0.9.97/soilKey/man/test_shiny_ped_surfaces.Rd |only soilKey-0.9.97/soilKey/man/test_shrink_swell_cracks.Rd |only soilKey-0.9.97/soilKey/man/test_slickensides_present.Rd |only soilKey-0.9.97/soilKey/man/test_spodic_aluminum_iron.Rd |only soilKey-0.9.97/soilKey/man/test_stagnic_pattern.Rd |only soilKey-0.9.97/soilKey/man/test_starts_within.Rd |only soilKey-0.9.97/soilKey/man/test_takyric_surface.Rd |only soilKey-0.9.97/soilKey/man/test_technic_hardmaterial_at_surface.Rd |only soilKey-0.9.97/soilKey/man/test_texture_argic.Rd |only soilKey-0.9.97/soilKey/man/test_top_at_or_above.Rd |only soilKey-0.9.97/soilKey/man/test_volcanic_glass_above.Rd |only soilKey-0.9.97/soilKey/man/test_yermic_surface.Rd |only soilKey-0.9.97/soilKey/man/thaptic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/thapto_humic_usda.Rd |only soilKey-0.9.97/soilKey/man/turbic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/ultic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/ultisol_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/ultisol_usda.Rd |only soilKey-0.9.97/soilKey/man/umbric_epipedon_usda.Rd |only soilKey-0.9.97/soilKey/man/umbric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/unpack_vlm_attr.Rd |only soilKey-0.9.97/soilKey/man/utm_crs_for_point.Rd |only soilKey-0.9.97/soilKey/man/valid_provenance_sources.Rd |only soilKey-0.9.97/soilKey/man/validate_against_schema.Rd |only soilKey-0.9.97/soilKey/man/validate_or_retry.Rd |only soilKey-0.9.97/soilKey/man/vermic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/vertic_aridisol_usda.Rd |only soilKey-0.9.97/soilKey/man/vertic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/vertisol_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/vertisol_usda.Rd |only soilKey-0.9.97/soilKey/man/vertissolo.Rd |only soilKey-0.9.97/soilKey/man/vertissolo_ebanico.Rd |only soilKey-0.9.97/soilKey/man/vertissolo_haplico.Rd |only soilKey-0.9.97/soilKey/man/vertissolo_hidromorfico.Rd |only soilKey-0.9.97/soilKey/man/vitrand_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/vitrandic_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/vitric_subgroup_usda.Rd |only soilKey-0.9.97/soilKey/man/wassent_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/wassist_qualifying_usda.Rd |only soilKey-0.9.97/soilKey/man/xanthic_subgroup_usda.Rd |only 1253 files changed, 12090 insertions(+), 4879 deletions(-)
Title: Datasets and Supplemental Functions from 'OpenIntro' Textbooks
and Labs
Description: Supplemental functions and data for 'OpenIntro' resources, which
includes open-source textbooks and resources for introductory statistics
(<https://www.openintro.org/>). The package contains datasets used in our
open-source textbooks along with custom plotting functions for reproducing
book figures. Note that many functions and examples include color
transparency; some plotting elements may not show up properly (or at all)
when run in some versions of Windows operating system.
Author: Mine Cetinkaya-Rundel [aut, cre] ,
David Diez [aut],
Andrew Bray [aut],
Albert Y. Kim [aut] ,
Ben Baumer [aut],
Chester Ismay [aut],
Nick Paterno [aut],
Christopher Barr [aut]
Maintainer: Mine Cetinkaya-Rundel <cetinkaya.mine@gmail.com>
Diff between openintro versions 2.5.0 dated 2024-05-31 and 2.5.1 dated 2026-06-22
DESCRIPTION | 18 +-- MD5 | 176 +++++++++++++++++++++++--------- NEWS.md | 9 + R/data-COL.R | 2 R/data-LEAP.R |only R/data-ames.R | 2 R/data-arenosa.R |only R/data-bac.R | 2 R/data-cars93.R | 2 R/data-cdc.R |only R/data-cdc.samp.R |only R/data-census.2010.R |only R/data-cpu.R | 2 R/data-danish.ed.primary.R |only R/data-danish.ed.validation.R |only R/data-dds.discr.R |only R/data-famuss.R |only R/data-fish_age.R | 2 R/data-flow_rates.R | 2 R/data-forest.birds.R |only R/data-frog.R |only R/data-heart_transplant.R | 4 R/data-hyperuricemia.R |only R/data-hyperuricemia.samp.R |only R/data-infant_mortality_2022.R |only R/data-loans_full_schema.R | 7 - R/data-mammals.R | 6 - R/data-mcas.R |only R/data-mcu_films.R | 2 R/data-military.R | 2 R/data-movies.R | 2 R/data-nhanes.samp.R |only R/data-nhanes.samp.adult.500.R |only R/data-nhanes.samp.adult.R |only R/data-opp_insights_college.R |only R/data-opp_insights_colleges_4year.R |only R/data-oscars.R | 2 R/data-pm25_2011_durham.R | 2 R/data-pm25_2022_durham.R | 2 R/data-prevend.R |only R/data-prevend.samp.R |only R/data-sugar.levels.A.R |only R/data-sugar.levels.B.R |only R/data-swim.R |only R/data-tb.interruption.R |only R/data-thermometry.R |only R/data-tourism.R | 2 R/data-ucla_textbooks_f18.R | 2 R/data-wdi_2022.R |only R/edaPlot.R | 192 +++++++++++++++++++++++------------ README.md | 2 build/partial.rdb |binary build/vignette.rds |binary data/LEAP.rda |only data/arenosa.rda |only data/cdc.rda |only data/cdc.samp.rda |only data/census.2010.rda |only data/danish.ed.primary.rda |only data/danish.ed.validation.rda |only data/dds.discr.rda |only data/famuss.rda |only data/forest.birds.rda |only data/frog.rda |only data/hyperuricemia.rda |only data/hyperuricemia.samp.rda |only data/infant_mortality_2022.rda |only data/mcas.rda |only data/nhanes.samp.adult.500.rda |only data/nhanes.samp.adult.rda |only data/nhanes.samp.rda |only data/opp_insights_colleges.rda |only data/opp_insights_colleges_4year.rda |only data/prevend.rda |only data/prevend.samp.rda |only data/sugar.levels.A.rda |only data/sugar.levels.B.rda |only data/swim.rda |only data/tb.interruption.rda |only data/thermometry.rda |only data/wdi_2022.rda |only man/COL.Rd | 2 man/LEAP.Rd |only man/ames.Rd | 2 man/arenosa.Rd |only man/bac.Rd | 2 man/cars93.Rd | 2 man/cdc.Rd |only man/cdc.samp.Rd |only man/census.2010.Rd |only man/cpu.Rd | 2 man/danish.ed.primary.Rd |only man/danish.ed.validation.Rd |only man/dds.discr.Rd |only man/famuss.Rd |only man/fish_age.Rd | 2 man/flow_rates.Rd | 2 man/forest.birds.Rd |only man/frog.Rd |only man/heart_transplant.Rd | 3 man/hyperuricemia.Rd |only man/hyperuricemia.samp.Rd |only man/infant_mortality_2022.Rd |only man/loans_full_schema.Rd | 7 - man/mammals.Rd | 6 - man/mcas.Rd |only man/mcu_films.Rd | 2 man/military.Rd | 2 man/movies.Rd | 2 man/nhanes.samp.Rd |only man/nhanes.samp.adult.500.Rd |only man/nhanes.samp.adult.Rd |only man/openintro-package.Rd | 3 man/openintro_pal.Rd | 2 man/opp_insights_colleges.Rd |only man/opp_insights_colleges_4year.Rd |only man/oscars.Rd | 2 man/pm25_2011_durham.Rd | 2 man/pm25_2022_durham.Rd | 2 man/prevend.Rd |only man/prevend.samp.Rd |only man/scale_color_openintro.Rd | 2 man/scale_fill_openintro.Rd | 2 man/sugar.levels.A.Rd |only man/sugar.levels.B.Rd |only man/swim.Rd |only man/tb.interruption.Rd |only man/thermometry.Rd |only man/tourism.Rd | 2 man/ucla_textbooks_f18.Rd | 2 man/wdi_2022.Rd |only 131 files changed, 328 insertions(+), 171 deletions(-)
Title: Comprehensive R Wrapper and Shiny Interface for 'Alphavantage
Financial Data' API
Description: Download, manage, and visualize via Shiny App 'Alphavantage financial data' <https://www.alphavantage.co/documentation/>. Data is downloaded and organized into `data.table` objects using a single calling function with optional helper functions to extract and simplify more complex data. A Shiny interface is also provided to download, manage, and graph asset prices and characteristics.
Author: Derek Holmes [aut, cre, cph]
Maintainer: Derek Holmes <derek@derekholmes.com>
Diff between alphavantagepf versions 0.3.2 dated 2026-01-22 and 0.8.0 dated 2026-06-22
DESCRIPTION | 36 ++-- MD5 | 73 ++++++--- NAMESPACE | 32 ++++ NEWS.md | 50 ++++++ R/Constants.R | 120 ++++++++++++++- R/app.R |only R/app_db.R |only R/app_support.R |only R/app_themes.R |only R/av_api_key.R | 4 R/av_extract.R | 34 +++- R/av_extract_opts.R | 109 ++++++++++++-- R/av_get_pf.R | 81 ++++++---- R/av_runapp.R |only R/global_vars.R | 12 + R/preamble.R |only R/sysdata.rda |binary R/utilities.R |only README.md | 263 ++++++++++++++++++++-------------- build/vignette.rds |binary inst/doc/shinyapp-alphavantagepf.R |only inst/doc/shinyapp-alphavantagepf.Rmd |only inst/doc/shinyapp-alphavantagepf.html |only inst/doc/usage-alphvantagepf.Rmd | 6 inst/doc/usage-alphvantagepf.html | 6 inst/extdata/av_defaults.csv |only inst/extdata/av_funcmap.csv | 241 ++++++++++++++++--------------- inst/extdata/av_shiny_opts.csv |only inst/extdata/cryptocurrency_list.csv |only inst/extdata/extracalcs.csv |only inst/extdata/overview_map.csv |only inst/extdata/table_aes.csv |only man/av_add_assetgroups.Rd |only man/av_add_data.Rd |only man/av_extract_df.Rd | 15 + man/av_get_pf.Rd | 14 - man/av_grep_opts.Rd | 28 ++- man/av_opt_helper_cols.Rd |only man/av_reset_defaults.Rd |only man/av_runShiny.Rd |only man/dump_the.Rd |only man/figures |only man/gt.basetheme.Rd |only man/message_if.Rd |only vignettes/img |only vignettes/shinyapp-alphavantagepf.Rmd |only vignettes/usage-alphvantagepf.Rmd | 6 47 files changed, 785 insertions(+), 345 deletions(-)
More information about alphavantagepf at CRAN
Permanent link
Title: Load Microdata from Colombia's 'GEIH' ('DANE')
Description: Programmatic access to microdata from Colombia's Gran
Encuesta Integrada de Hogares ('GEIH'), published by 'DANE'. Provides
a tidy interface to download, parse, and harmonize labor market
surveys from 2007 to present. R companion to the 'pulso-co' 'Python'
package.
Author: Esteban Labastidas [aut, cre]
Maintainer: Esteban Labastidas <estebanlabastidas123@gmail.com>
Diff between pulso versions 0.1.0 dated 2026-06-12 and 0.1.1 dated 2026-06-22
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 6 ++++++ R/banrep-tpm.R | 10 ++++++---- R/describe.R | 6 ++++-- R/list-metadata.R | 8 +++++--- R/load-merged.R | 6 ++++-- R/load.R | 8 +++++--- man/pulso_describe_column.Rd | 6 ++++-- man/pulso_list_columns_metadata.Rd | 8 +++++--- man/pulso_load.Rd | 8 +++++--- man/pulso_load_merged.Rd | 6 ++++-- man/pulso_tpm.Rd | 10 ++++++---- 13 files changed, 69 insertions(+), 43 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, biplot, scatter plot, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.2.9 dated 2026-05-07 and 2.3.0 dated 2026-06-22
DESCRIPTION | 8 - MD5 | 12 +- NAMESPACE | 2 R/CI.R |only R/FA.R | 200 ++++++++++++++++++++++++------------------------- R/Plot.CI.R |only man/CI.Rd |only man/MVar.pt-package.Rd | 4 man/Plot.CI.Rd |only 9 files changed, 115 insertions(+), 111 deletions(-)
Title: Environments Behaving (Almost) as Lists
Description: List environments are environments that have list-like properties. For instance, the elements of a list environment are ordered and can be accessed and iterated over using index subsetting, e.g. 'x <- listenv(a = 1, b = 2); for (i in seq_along(x)) x[[i]] <- x[[i]] ^ 2; y <- as.list(x)'.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between listenv versions 0.10.1 dated 2026-03-10 and 1.0.0 dated 2026-06-22
.Rinstignore |only DESCRIPTION | 16 +++++++++------- MD5 | 11 ++++++----- NEWS.md | 7 +++++++ R/parse_env_subset.R | 4 ++-- README.md |only build/vignette.rds |binary man/parse_env_subset.Rd | 4 ++-- 8 files changed, 26 insertions(+), 16 deletions(-)
Title: Tools and Statistical Procedures in Plant Science
Description: The 'inti' package is part of the 'inkaverse' project for developing
different procedures and tools used in plant science and experimental designs.
The mean aim of the package is to support researchers during the planning of
experiments and data collection (tarpuy()), data analysis and graphics (yupana())
, and scientific writing.
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] ,
Yoel Diaz-Saucedo [aut] ,
Maria Belen Kistner [ctb] ,
QuipoLab [ctb],
Inkaverse [cph]
Maintainer: Flavio Lozano-Isla <flozanoisla@gmail.com>
Diff between inti versions 0.7.0 dated 2026-06-08 and 0.7.1 dated 2026-06-22
inti-0.7.0/inti/R/colortext.R |only inti-0.7.0/inti/R/figure2qmd.R |only inti-0.7.0/inti/R/figure2rmd.R |only inti-0.7.0/inti/R/gdoc2qmd.R |only inti-0.7.0/inti/R/table2qmd.R |only inti-0.7.0/inti/R/table2rmd.R |only inti-0.7.0/inti/inst/extdata/_extensions/scihub/draft.md |only inti-0.7.0/inti/inst/tarpuy/rsconnect/shinyapps.io/flavjack |only inti-0.7.0/inti/inst/yupana/rsconnect/shinyapps.io/flavjack |only inti-0.7.0/inti/man/colortext.Rd |only inti-0.7.0/inti/man/figure2qmd.Rd |only inti-0.7.0/inti/man/figure2rmd.Rd |only inti-0.7.0/inti/man/gdoc2qmd.Rd |only inti-0.7.0/inti/man/table2qmd.Rd |only inti-0.7.0/inti/man/table2rmd.Rd |only inti-0.7.1/inti/DESCRIPTION | 15 inti-0.7.1/inti/MD5 | 94 inti-0.7.1/inti/NAMESPACE | 12 inti-0.7.1/inti/NEWS.md | 17 inti-0.7.1/inti/R/design_augmented.R |only inti-0.7.1/inti/R/design_noreps.R | 7 inti-0.7.1/inti/R/design_repblock.R | 9 inti-0.7.1/inti/R/design_split.R |only inti-0.7.1/inti/R/design_split_rcbd.R |only inti-0.7.1/inti/R/plot_augmented_design.R |only inti-0.7.1/inti/R/plot_split_rcbd_design.R |only inti-0.7.1/inti/R/plot_standard_design.R |only inti-0.7.1/inti/R/rticle.R | 379 + inti-0.7.1/inti/R/tarpuy_design.R | 359 - inti-0.7.1/inti/R/tarpuy_plex.R | 149 inti-0.7.1/inti/R/tarpuy_plotdesign.R | 220 inti-0.7.1/inti/R/yupana_mvr.R | 2 inti-0.7.1/inti/README.md | 85 inti-0.7.1/inti/inst/doc/apps.html | 2 inti-0.7.1/inti/inst/doc/rticles.html | 2 inti-0.7.1/inti/inst/doc/rticles.qmd | 2 inti-0.7.1/inti/inst/extdata/_extensions/scihub/analysis.qmd | 84 inti-0.7.1/inti/inst/extdata/_extensions/scihub/article.qmd | 32 inti-0.7.1/inti/inst/extdata/_extensions/scihub/design/labels.qmd | 4 inti-0.7.1/inti/inst/extdata/_extensions/scihub/files/style.css | 36 inti-0.7.1/inti/inst/extdata/_extensions/scihub/render2rticle.md |only inti-0.7.1/inti/inst/tarpuy/pkgs.R | 1 inti-0.7.1/inti/inst/tarpuy/rsconnect/shinyapps.io/inkaverse |only inti-0.7.1/inti/inst/tarpuy/server.R | 2213 ++++++---- inti-0.7.1/inti/inst/tarpuy/ui.R | 1786 ++++---- inti-0.7.1/inti/inst/tarpuy/www/msgs.R | 51 inti-0.7.1/inti/inst/yupana/pkgs.R | 1 inti-0.7.1/inti/inst/yupana/rsconnect/shinyapps.io/inkaverse |only inti-0.7.1/inti/inst/yupana/server.R | 2 inti-0.7.1/inti/inst/yupana/ui.R | 4 inti-0.7.1/inti/inst/yupana/www/msgs.R | 52 inti-0.7.1/inti/man/design_augmented.Rd |only inti-0.7.1/inti/man/design_noreps.Rd | 2 inti-0.7.1/inti/man/design_repblock.Rd | 6 inti-0.7.1/inti/man/design_split.Rd |only inti-0.7.1/inti/man/design_split_rcbd.Rd |only inti-0.7.1/inti/man/plot_augmented_design.Rd |only inti-0.7.1/inti/man/plot_split_rcbd_design.Rd |only inti-0.7.1/inti/man/plot_standard_design.Rd |only inti-0.7.1/inti/man/tarpuy_plex.Rd | 212 inti-0.7.1/inti/man/tarpuy_plotdesign.Rd | 46 inti-0.7.1/inti/vignettes/rticles.qmd | 2 62 files changed, 3616 insertions(+), 2272 deletions(-)
Title: Plotting Tool for Brain Atlases
Description: Provides a 'ggplot2' geom and position for visualizing brain
region data on cortical, subcortical, and white matter tract atlases.
Brain atlas geometries are stored as polygon data, enabling
seamless integration with the 'ggplot2' ecosystem including faceting,
custom scales, and themes. Mowinckel & Vidal-Piñeiro (2020)
<doi:10.1177/2515245920928009>.
Author: Athanasia Mo Mowinckel [aut, cre] ,
Didac Vidal-Pineiro [aut] ,
Ramiro Magno [ctb] ,
Center for Lifespan Changes in Brain and Cognition, University of Oslo,
Norway [cph]
Maintainer: Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>
Diff between ggseg versions 2.1.1 dated 2026-04-16 and 2.2.0 dated 2026-06-22
DESCRIPTION | 32 LICENSE | 2 MD5 | 148 - NAMESPACE | 11 NEWS.md | 227 + R/annotate-brain-polygon.R |only R/annotate-brain.R | 121 - R/brain_join.R | 13 R/coord-funcs.R | 34 R/coords.R | 5 R/geom-brain-polygon.R |only R/geom-brain.R | 84 R/ggseg-package.R | 5 R/layer-brain.R | 3 R/position-brain-polygon.R |only R/position-brain.R | 384 +-- R/position-layout.R |only R/scale-brain.R | 12 R/sf-availability.R |only inst/WORDLIST | 16 inst/doc/external-data.R | 34 inst/doc/external-data.Rmd | 81 inst/doc/external-data.html | 139 - inst/doc/freesurfer-files.R | 33 inst/doc/freesurfer-files.Rmd | 33 inst/doc/freesurfer-files.html | 35 inst/doc/ggseg.R | 41 inst/doc/ggseg.Rmd | 80 inst/doc/ggseg.html | 266 +- inst/doc/positioning-views.R | 64 inst/doc/positioning-views.Rmd | 140 - inst/doc/positioning-views.html | 228 + man/annotate_brain.Rd | 17 man/brain_join.Rd | 10 man/coord_brain.Rd |only man/geom_brain_sf.Rd |only man/ggbrain.Rd | 14 man/ggseg.Rd | 6 man/position_brain.Rd | 29 man/position_brain_sf.Rd |only man/reexports.Rd | 3 man/reposition_brain.Rd | 21 man/scale_brain.Rd | 1 tests/testthat/Rplots.pdf |only tests/testthat/_snaps/annotate-brain/aseg-default-labels.svg | 1166 ++++----- tests/testthat/_snaps/annotate-brain/aseg-nrow-2-labels.svg | 1172 ++++------ tests/testthat/_snaps/annotate-brain/dk-default-labels.svg | 912 +++---- tests/testthat/_snaps/annotate-brain/dk-hemi-view-labels.svg | 912 +++---- tests/testthat/_snaps/brain-atlas-plots/aseg-default-horizontal.svg | 1150 ++++----- tests/testthat/_snaps/brain-atlas-plots/aseg-ncol-3.svg | 1146 ++++----- tests/testthat/_snaps/brain-atlas-plots/aseg-nrow-2.svg | 1158 ++++----- tests/testthat/_snaps/brain-atlas-plots/aseg-type-rows.svg | 1150 ++++----- tests/testthat/_snaps/brain-atlas-plots/aseg-vertical.svg | 1150 ++++----- tests/testthat/_snaps/brain-atlas-plots/dk-cols-hemi-view.svg | 896 +++---- tests/testthat/_snaps/brain-atlas-plots/dk-custom-view-order.svg | 486 ++-- tests/testthat/_snaps/brain-atlas-plots/dk-default-horizontal.svg | 896 +++---- tests/testthat/_snaps/brain-atlas-plots/dk-hemi-view.svg | 894 +++---- tests/testthat/_snaps/brain-atlas-plots/dk-rows-hemi-view.svg | 896 +++---- tests/testthat/_snaps/brain-atlas-plots/dk-vertical.svg | 896 +++---- tests/testthat/_snaps/brain-atlas-plots/dk-view-hemi.svg | 894 +++---- tests/testthat/_snaps/brain-atlas-plots/tracula-default-horizontal.svg | 738 +++--- tests/testthat/_snaps/brain-atlas-plots/tracula-ncol-3.svg | 744 +++--- tests/testthat/_snaps/brain-atlas-plots/tracula-nrow-2.svg | 752 +++--- tests/testthat/_snaps/brain-atlas-plots/tracula-type-rows.svg | 746 +++--- tests/testthat/_snaps/brain-atlas-plots/tracula-vertical.svg | 746 +++--- tests/testthat/test-annotate-brain-polygon.R |only tests/testthat/test-annotate-brain.R | 53 tests/testthat/test-brain_join.R | 5 tests/testthat/test-coord-funcs.R | 31 tests/testthat/test-coords.R | 3 tests/testthat/test-geom-brain-polygon.R |only tests/testthat/test-geom-brain.R | 111 tests/testthat/test-ggseg-adapt_scales.R | 2 tests/testthat/test-position-brain-polygon.R |only tests/testthat/test-position-brain.R | 43 tests/testthat/test-position-layout.R |only tests/testthat/test-scale-brain.R | 11 tests/testthat/test-sf-availability.R |only vignettes/external-data.Rmd | 81 vignettes/freesurfer-files.Rmd | 33 vignettes/ggseg.Rmd | 80 vignettes/positioning-views.Rmd | 140 - 82 files changed, 10982 insertions(+), 11483 deletions(-)
Title: A Future API for Parallel Processing using 'callr'
Description: Implementation of the Future API <doi:10.32614/RJ-2021-048> on top of the 'callr' package. This allows you to process futures, as defined by the 'future' package, in parallel out of the box, on your local (Linux, macOS, Windows, ...) machine. Contrary to backends relying on the 'parallel' package (e.g. 'future::multisession') and socket connections, the 'callr' backend provided here can run more than 125 parallel R processes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.callr versions 0.10.2 dated 2025-10-11 and 1.0.0 dated 2026-06-22
future.callr-0.10.2/future.callr/R/CallrFutureError-class.R |only future.callr-0.10.2/future.callr/man/CallrFutureError.Rd |only future.callr-1.0.0/future.callr/.Rinstignore |only future.callr-1.0.0/future.callr/DESCRIPTION | 10 future.callr-1.0.0/future.callr/MD5 | 31 future.callr-1.0.0/future.callr/NAMESPACE | 1 future.callr-1.0.0/future.callr/NEWS.md | 20 future.callr-1.0.0/future.callr/R/CallrFutureBackend-class.R | 18 future.callr-1.0.0/future.callr/R/utils.R | 6 future.callr-1.0.0/future.callr/README.md |only future.callr-1.0.0/future.callr/build/vignette.rds |binary future.callr-1.0.0/future.callr/inst/doc/future.callr.html | 12 future.callr-1.0.0/future.callr/inst/doc/future.callr.md.rsp | 4 future.callr-1.0.0/future.callr/inst/testme/deploy.R | 19 future.callr-1.0.0/future.callr/inst/testme/run.R | 562 +++++----- future.callr-1.0.0/future.callr/man/CallrFutureBackend.Rd | 2 future.callr-1.0.0/future.callr/man/future.callr.Rd | 5 future.callr-1.0.0/future.callr/man/print.CallrFuture.Rd | 2 future.callr-1.0.0/future.callr/vignettes/future.callr.md.rsp | 4 19 files changed, 418 insertions(+), 278 deletions(-)
Title: R Interface to 'DuckDB' Database with Spatial Extension
Description: Fast & memory-efficient functions to analyze and manipulate large
spatial data data sets. It leverages the fast analytical
capabilities of 'DuckDB' and its spatial extension (see <https://duckdb.org/docs/stable/core_extensions/spatial/overview>)
while maintaining compatibility with R’s spatial data ecosystem to
work with spatial vector data.
Author: Adrian Cidre Gonzalez [aut, cre] ,
Egor Kotov [aut] ,
Rafael H. M. Pereira [aut]
Maintainer: Adrian Cidre Gonzalez <adrian.cidre@gmail.com>
Diff between duckspatial versions 1.1.1 dated 2026-06-06 and 1.1.2 dated 2026-06-22
DESCRIPTION | 8 MD5 | 513 +- NAMESPACE | 396 - NEWS.md | 552 +- R/crs_persistence.R | 902 ++-- R/db_extension.R | 359 - R/db_resources.R | 200 R/db_utils.R | 724 +-- R/ddbs_affine.R | 2134 +++++----- R/ddbs_as_spatial.R | 557 +- R/ddbs_coordinates.R | 562 +- R/ddbs_crs.R | 1206 ++--- R/ddbs_dimensions.R | 580 +- R/ddbs_dimensions_ops.R | 528 +- R/ddbs_extent_funs.R | 1066 ++--- R/ddbs_filter.R | 388 - R/ddbs_generate_points.R | 272 - R/ddbs_geom_conversion.R | 238 - R/ddbs_geom_validation.R | 426 +- R/ddbs_interpolate_aw.R | 886 ++-- R/ddbs_join.R | 420 +- R/ddbs_measure.R | 1210 +++-- R/ddbs_ops_binary.R | 1179 +++-- R/ddbs_ops_unary.R | 2608 ++++++------ R/ddbs_ops_unary_line.R | 1502 ++++--- R/ddbs_options.R | 272 - R/ddbs_predicates.R | 862 ++-- R/ddbs_quadkey.R | 530 +- R/ddbs_queries.R | 251 - R/ddbs_templates.R | 1003 ++-- R/ddbs_union.R | 1201 ++--- R/duckspatial-package.R | 14 R/duckspatial_df.R | 992 ++-- R/duckspatial_df_dplyr_methods.R | 1476 +++---- R/duckspatial_df_sf_methods.R | 618 +- R/io_open_dataset.R | 1122 ++--- R/io_read.R | 528 +- R/io_register.R | 782 +-- R/io_write.R | 568 +- R/io_write_dataset.R | 1234 ++--- R/nanoarrow_methods.R | 232 - R/utils_assert_fun.R | 504 +- R/utils_format.R | 454 +- R/utils_not_exported.R | 3138 +++++++-------- R/utils_testing.R | 110 R/zzz.R | 80 README.md | 236 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/aw_interpolation.R | 286 - inst/doc/aw_interpolation.html | 1301 +++--- inst/doc/aw_interpolation.qmd | 426 +- inst/doc/benchmark.R | 938 ++-- inst/doc/benchmark.html | 1445 +++--- inst/doc/benchmark.qmd | 1126 ++--- inst/doc/duckspatial.R | 264 - inst/doc/duckspatial.html | 1067 ++--- inst/doc/duckspatial.qmd | 588 +- inst/doc/spatial_joins.R | 166 inst/doc/spatial_joins.html | 1065 ++--- inst/doc/spatial_joins.qmd | 318 - inst/spatial/argentina.geojson | 16 inst/spatial/countries.geojson | 528 +- inst/spatial/rivers.geojson | 214 - man/as_duckspatial_df.Rd | 120 man/as_nanoarrow_array_stream.duckspatial_df.Rd | 50 man/convert_to_sf_wkb.Rd | 44 man/convert_wkb_to_sfc.Rd | 24 man/crs_equal.Rd | 40 man/dbConnCheck.Rd | 36 man/ddbs_affine.Rd | 188 man/ddbs_as_format.Rd | 144 man/ddbs_as_points.Rd | 252 - man/ddbs_bbox.Rd | 176 man/ddbs_binary_funs.Rd | 419 +- man/ddbs_boundary.Rd | 162 man/ddbs_buffer.Rd | 220 - man/ddbs_build_area.Rd | 140 man/ddbs_centroid.Rd | 182 man/ddbs_collect.Rd | 116 man/ddbs_compute.Rd | 118 man/ddbs_concave_hull.Rd | 220 - man/ddbs_convex_hull.Rd | 196 man/ddbs_coord_bounds.Rd |only man/ddbs_create_conn.Rd | 134 man/ddbs_create_schema.Rd | 82 man/ddbs_crs.Rd | 154 man/ddbs_default_conn.Rd | 44 man/ddbs_dimension.Rd |only man/ddbs_drivers.Rd | 60 man/ddbs_drop_geometry.Rd | 80 man/ddbs_dump.Rd | 156 man/ddbs_endpoint.Rd | 124 man/ddbs_endpoint_startpoint.Rd | 210 - man/ddbs_envelope.Rd | 206 man/ddbs_exterior_ring.Rd | 168 man/ddbs_filter.Rd | 290 - man/ddbs_flip.Rd | 196 man/ddbs_flip_coordinates.Rd | 172 man/ddbs_force_dim.Rd | 292 - man/ddbs_format_crs.Rd | 36 man/ddbs_generate_points.Rd | 180 man/ddbs_geom_col.Rd | 34 man/ddbs_geom_validation_funs.Rd | 316 - man/ddbs_geometry_type.Rd | 102 man/ddbs_get_npoints.Rd | 206 man/ddbs_glimpse.Rd | 86 man/ddbs_has_dim.Rd | 228 - man/ddbs_install.Rd | 86 man/ddbs_interpolate_aw.Rd | 356 - man/ddbs_join.Rd | 322 - man/ddbs_line_interpolate.Rd | 200 man/ddbs_line_locate_point.Rd |only man/ddbs_line_merge.Rd | 176 man/ddbs_line_substring.Rd | 184 man/ddbs_list_tables.Rd | 88 man/ddbs_load.Rd | 84 man/ddbs_locate.Rd | 242 - man/ddbs_make_envelope.Rd | 154 man/ddbs_make_line.Rd | 186 man/ddbs_make_polygon.Rd | 188 man/ddbs_make_valid.Rd | 170 man/ddbs_maximum_inscribed_circle.Rd | 194 man/ddbs_measure_funs.Rd | 601 +- man/ddbs_minimum_rotated_rectangle.Rd | 152 man/ddbs_multi.Rd | 152 man/ddbs_open_dataset.Rd | 194 man/ddbs_options.Rd | 96 man/ddbs_point.Rd |only man/ddbs_polygonize.Rd | 138 man/ddbs_predicate.Rd | 460 +- man/ddbs_quadkey.Rd | 220 - man/ddbs_read_meta.Rd | 96 man/ddbs_read_table.Rd | 124 man/ddbs_read_vector.Rd | 62 man/ddbs_register_table.Rd | 102 man/ddbs_register_vector.Rd | 68 man/ddbs_remove_repeated_points.Rd | 184 man/ddbs_rotate.Rd | 212 - man/ddbs_rotate_3d.Rd | 204 man/ddbs_scale.Rd | 210 - man/ddbs_set_crs.Rd | 174 man/ddbs_set_resources.Rd | 78 man/ddbs_shear.Rd | 214 - man/ddbs_shift.Rd | 180 man/ddbs_simplify.Rd | 188 man/ddbs_sitrep.Rd | 36 man/ddbs_startpoint.Rd | 124 man/ddbs_stop_conn.Rd | 58 man/ddbs_temp_table_name.Rd | 30 man/ddbs_temp_view_name.Rd | 30 man/ddbs_transform.Rd | 218 - man/ddbs_union_funs.Rd | 354 - man/ddbs_vertices.Rd |only man/ddbs_voronoi.Rd | 168 man/ddbs_write_dataset.Rd | 294 - man/ddbs_write_table.Rd | 158 man/ddbs_write_vector.Rd | 90 man/ddbs_xy.Rd | 242 - man/duckspatial-package.Rd | 65 man/duckspatial_df_dplyr.Rd | 222 - man/duckspatial_df_sf.Rd | 52 man/feedback_query.Rd | 38 man/figures/lifecycle-deprecated.svg | 42 man/figures/lifecycle-experimental.svg | 42 man/figures/lifecycle-stable.svg | 58 man/figures/lifecycle-superseded.svg | 42 man/get_conn_from_input.Rd | 36 man/get_geom_name.Rd | 44 man/get_nrow.Rd | 40 man/get_query_name.Rd | 36 man/get_st_predicate.Rd | 38 man/handle_heterogeneous_ingestion.Rd | 24 man/import_view_to_connection.Rd | 66 man/is_duckspatial_df.Rd | 34 man/new_duckspatial_df.Rd | 72 man/overwrite_table.Rd | 52 man/roxygen/templates/by_feature.R | 6 man/roxygen/templates/conn.R | 2 man/roxygen/templates/conn_default.R | 4 man/roxygen/templates/conn_null.R | 4 man/roxygen/templates/conn_x_conn_y.R | 10 man/roxygen/templates/crs.R | 2 man/roxygen/templates/memory_limit_gb.R | 2 man/roxygen/templates/mode.R | 14 man/roxygen/templates/name.R | 8 man/roxygen/templates/new_column.R | 4 man/roxygen/templates/output.R | 20 man/roxygen/templates/overwrite.R | 4 man/roxygen/templates/predicate.R | 4 man/roxygen/templates/predicate_args.R | 12 man/roxygen/templates/quiet.R | 4 man/roxygen/templates/returns_mode.R | 14 man/roxygen/templates/returns_output.R | 18 man/roxygen/templates/spatial_join_predicates.R | 36 man/roxygen/templates/threads.R | 2 man/roxygen/templates/x.R | 16 man/roxygen/templates/y.R | 14 tests/testthat.R | 26 tests/testthat/helper-projjson.R | 12 tests/testthat/setup.R | 76 tests/testthat/test-collect_options.R | 162 tests/testthat/test-compatibility.R | 258 - tests/testthat/test-connection-management.R | 252 - tests/testthat/test-crs-persistence.R | 416 - tests/testthat/test-db_extension.R |only tests/testthat/test-db_read.R | 192 tests/testthat/test-db_register.R | 440 +- tests/testthat/test-db_write.R | 440 +- tests/testthat/test-ddbs_affine.R | 2148 +++++----- tests/testthat/test-ddbs_as_spatial.R | 426 +- tests/testthat/test-ddbs_collect.R | 116 tests/testthat/test-ddbs_coordinates.R |only tests/testthat/test-ddbs_crs.R | 468 +- tests/testthat/test-ddbs_dimensions.R | 586 +- tests/testthat/test-ddbs_dimensions_ops.R | 512 +- tests/testthat/test-ddbs_extent_funs.R | 1034 ++-- tests/testthat/test-ddbs_filter.R | 442 +- tests/testthat/test-ddbs_generate_points.R | 226 - tests/testthat/test-ddbs_geom_conversion.R | 326 - tests/testthat/test-ddbs_geom_validation.R | 1162 ++--- tests/testthat/test-ddbs_interpolate_aw.R | 950 ++-- tests/testthat/test-ddbs_join.R | 460 +- tests/testthat/test-ddbs_macros.R | 758 +-- tests/testthat/test-ddbs_measure.R | 2281 +++++----- tests/testthat/test-ddbs_open_dataset.R | 886 ++-- tests/testthat/test-ddbs_ops_binary.R | 1034 ++-- tests/testthat/test-ddbs_ops_unary.R | 3058 +++++++------- tests/testthat/test-ddbs_ops_unary_line.R | 1881 +++++--- tests/testthat/test-ddbs_options.R | 92 tests/testthat/test-ddbs_predicates.R | 720 +-- tests/testthat/test-ddbs_quadkey.R | 360 - tests/testthat/test-ddbs_queries.R | 1219 +++-- tests/testthat/test-ddbs_transform.R | 562 +- tests/testthat/test-ddbs_union.R | 1023 ++-- tests/testthat/test-ddbs_write_dataset-fid.R | 160 tests/testthat/test-ddbs_write_dataset-validation.R | 314 - tests/testthat/test-ddbs_write_dataset.R | 628 +-- tests/testthat/test-ddbs_write_vector_cross_connection.R | 192 tests/testthat/test-duckdbfs-interop.R | 135 tests/testthat/test-duckspatial_df.R | 430 +- tests/testthat/test-duckspatial_df_dplyr_methods.R | 882 ++-- tests/testthat/test-duckspatial_df_sf_methods.R | 154 tests/testthat/test-formats_autodetect.R | 280 - tests/testthat/test-get_query_list.R | 248 - tests/testthat/test-helper-temp-spatial-files.R | 148 tests/testthat/test-import-strategies.R | 322 - tests/testthat/test-import_view_to_connection.R | 296 - tests/testthat/test-mixed-inputs.R | 222 - tests/testthat/test-nanoarrow_methods.R | 276 - tests/testthat/test-normalize_spatial_input.R | 142 tests/testthat/test-regression-inefficient-fallback.R | 136 tests/testthat/test-resolve_connections.R | 254 - tests/testthat/test-resources.R | 150 tests/testthat/test-tmp_conn.R | 250 - tests/testthat/test-utils.R | 128 tests/testthat/test-utils_format.R | 180 vignettes/aw_interpolation.qmd | 426 +- vignettes/benchmark.qmd | 1126 ++--- vignettes/duckspatial.qmd | 588 +- vignettes/spatial_joins.qmd | 318 - 261 files changed, 48595 insertions(+), 46312 deletions(-)
Title: Calculate Cluster-Robust p-Values and Confidence Intervals
Description: Calculate p-values and confidence intervals using cluster-adjusted t-statistics (based on Ibragimov and Muller (2010) <DOI:10.1198/jbes.2009.08046>, pairs cluster bootstrapped t-statistics, and wild cluster bootstrapped t-statistics (the latter two techniques based on Cameron, Gelbach, and Miller (2008) <DOI:10.1162/rest.90.3.414>. Procedures are included for use with GLM, plm (pooling or fixed effects), and mlogit models.
Author: Justin Esarey [aut, cre]
Maintainer: Justin Esarey <justin@justinesarey.com>
Diff between clusterSEs versions 2.6.5 dated 2021-04-05 and 2.6.6 dated 2026-06-22
clusterSEs-2.6.5/clusterSEs/R/clusterBS.ivreg.R |only clusterSEs-2.6.5/clusterSEs/R/clusterIM.ivreg.R |only clusterSEs-2.6.5/clusterSEs/R/clusterwild.ivreg.R |only clusterSEs-2.6.5/clusterSEs/man/cluster.bs.ivreg.Rd |only clusterSEs-2.6.5/clusterSEs/man/cluster.im.ivreg.Rd |only clusterSEs-2.6.5/clusterSEs/man/cluster.wild.ivreg.Rd |only clusterSEs-2.6.6/clusterSEs/DESCRIPTION | 17 +--- clusterSEs-2.6.6/clusterSEs/MD5 | 41 ++++----- clusterSEs-2.6.6/clusterSEs/NAMESPACE | 75 ++++++++---------- clusterSEs-2.6.6/clusterSEs/R/clusterBS.glm.R | 4 clusterSEs-2.6.6/clusterSEs/R/clusterBS.mlogit.R | 6 - clusterSEs-2.6.6/clusterSEs/R/clusterBS.plm.R | 4 clusterSEs-2.6.6/clusterSEs/R/clusterIM.glm.R | 4 clusterSEs-2.6.6/clusterSEs/R/clusterIM.mlogit.R | 4 clusterSEs-2.6.6/clusterSEs/R/clusterwild.glm.R | 4 clusterSEs-2.6.6/clusterSEs/R/clusterwild.plm.R | 4 clusterSEs-2.6.6/clusterSEs/build |only clusterSEs-2.6.6/clusterSEs/inst/CITATION | 20 ++-- clusterSEs-2.6.6/clusterSEs/man/cluster.bs.glm.Rd | 4 clusterSEs-2.6.6/clusterSEs/man/cluster.bs.mlogit.Rd | 5 - clusterSEs-2.6.6/clusterSEs/man/cluster.bs.plm.Rd | 4 clusterSEs-2.6.6/clusterSEs/man/cluster.im.glm.Rd | 4 clusterSEs-2.6.6/clusterSEs/man/cluster.im.mlogit.Rd | 4 clusterSEs-2.6.6/clusterSEs/man/cluster.wild.glm.Rd | 4 clusterSEs-2.6.6/clusterSEs/man/cluster.wild.plm.Rd | 4 25 files changed, 101 insertions(+), 111 deletions(-)