Title: Create Interactive Chart with the JavaScript 'ApexCharts'
Library
Description: Provides an 'htmlwidgets' interface to 'apexcharts.js'.
'Apexcharts' is a modern JavaScript charting library to build interactive charts and visualizations with simple API.
'Apexcharts' examples and documentation are available here: <https://apexcharts.com/>.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
Juned Chhipa [cph] ,
Mike Bostock [cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between apexcharter versions 0.4.5 dated 2026-01-07 and 0.5.0 dated 2026-06-23
DESCRIPTION | 8 MD5 | 66 NAMESPACE | 1 NEWS.md | 16 R/apex-utils.R | 2611 +++++++++++++--------------- R/apex.R | 12 R/apexcharter.R | 2 R/parse-data.R | 413 ++-- inst/doc/apexcharter.R | 78 inst/doc/apexcharter.Rmd | 801 ++++---- inst/doc/apexcharter.html | 479 ++--- inst/htmlwidgets/apexcharter.js | 2 inst/htmlwidgets/apexcharter.js.LICENSE.txt | 37 man/apex.Rd | 20 man/ax-series.Rd | 4 man/ax_annotations.Rd | 20 man/ax_fill.Rd | 6 man/ax_forecast_data_points.Rd | 6 man/ax_grid.Rd | 6 man/ax_labels.Rd | 14 man/ax_legend.Rd | 4 man/ax_markers.Rd | 6 man/ax_nodata.Rd | 2 man/ax_plotOptions.Rd | 10 man/ax_responsive.Rd | 4 man/ax_states.Rd | 2 man/ax_stroke.Rd | 4 man/ax_theme.Rd | 6 man/ax_title.Rd | 2 man/ax_tooltip.Rd | 6 man/ax_xaxis.Rd | 10 man/ax_yaxis.Rd | 4 tests/testthat/test-apex-utils.R | 94 - vignettes/apexcharter.Rmd | 801 ++++---- 34 files changed, 2920 insertions(+), 2637 deletions(-)
Title: Facilitate Analysis of Proteomic Data from Olink
Description: A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.
Author: Kathleen Nevola [aut, cre] ,
Marianne Sandin [aut] ,
Jamey Guess [aut] ,
Simon Forsberg [aut] ,
Christoffer Cambronero [aut] ,
Pascal Pucholt [aut] ,
Boxi Zhang [aut] ,
Masoumeh Sheikhi [aut] ,
Klev Diamanti [aut] ,
Amrita Kar [aut] ,
Lei Conze [aut] [...truncated...]
Maintainer: Kathleen Nevola <biostattools@olink.com>
Diff between OlinkAnalyze versions 5.0.0 dated 2026-03-28 and 5.0.2 dated 2026-06-23
OlinkAnalyze-5.0.0/OlinkAnalyze/man/clean_assay_na.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/clean_assay_type.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/clean_assay_warning.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/clean_col_class.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/clean_control_sample_id.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/clean_duplicate_sample_id.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/clean_invalid_oid.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/clean_nonunique_uniprot.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/clean_qc_warning.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/clean_sample_type.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/pheatmap_annotate_heatmap.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/pheatmap_color_heatmap.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/pheatmap_extract_ellipsis_arg.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/pheatmap_lst_styling.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/pheatmap_run.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/pheatmap_set_plot_theme.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/plot_heatmap_check_inputs.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/plot_heatmap_clean_df.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/plot_heatmap_df_to_wide.Rd |only OlinkAnalyze-5.0.0/OlinkAnalyze/man/plot_heatmap_pheatmap_args.Rd |only OlinkAnalyze-5.0.2/OlinkAnalyze/DESCRIPTION | 13 OlinkAnalyze-5.0.2/OlinkAnalyze/MD5 | 169 OlinkAnalyze-5.0.2/OlinkAnalyze/NEWS.md | 643 - OlinkAnalyze-5.0.2/OlinkAnalyze/R/Olink_one_non_parametric.R | 27 OlinkAnalyze-5.0.2/OlinkAnalyze/R/check_npx.R | 2 OlinkAnalyze-5.0.2/OlinkAnalyze/R/clean_npx.R | 94 OlinkAnalyze-5.0.2/OlinkAnalyze/R/dist_plot.R | 9 OlinkAnalyze-5.0.2/OlinkAnalyze/R/npxProcessing.R | 6 OlinkAnalyze-5.0.2/OlinkAnalyze/R/olink_boxplot.R | 14 OlinkAnalyze-5.0.2/OlinkAnalyze/R/olink_bridge_selector.R | 8 OlinkAnalyze-5.0.2/OlinkAnalyze/R/olink_color.R | 8 OlinkAnalyze-5.0.2/OlinkAnalyze/R/olink_lmer.R | 266 OlinkAnalyze-5.0.2/OlinkAnalyze/R/olink_pathway_enrichment.R | 185 OlinkAnalyze-5.0.2/OlinkAnalyze/R/olink_qc_plot.R | 8 OlinkAnalyze-5.0.2/OlinkAnalyze/R/pca_plot.R | 5 OlinkAnalyze-5.0.2/OlinkAnalyze/R/plot_heatmap_helper.R | 77 OlinkAnalyze-5.0.2/OlinkAnalyze/R/plot_is_bridgeable.R | 245 OlinkAnalyze-5.0.2/OlinkAnalyze/R/plot_umap.R | 7 OlinkAnalyze-5.0.2/OlinkAnalyze/R/sysdata.rda |binary OlinkAnalyze-5.0.2/OlinkAnalyze/build/vignette.rds |binary OlinkAnalyze-5.0.2/OlinkAnalyze/data/npx_data1.rda |binary OlinkAnalyze-5.0.2/OlinkAnalyze/data/npx_data2.rda |binary OlinkAnalyze-5.0.2/OlinkAnalyze/inst/doc/OlinkAnalyze-Vignette.R | 1017 +- OlinkAnalyze-5.0.2/OlinkAnalyze/inst/doc/OlinkAnalyze-Vignette.Rmd | 1763 ++-- OlinkAnalyze-5.0.2/OlinkAnalyze/inst/doc/OlinkAnalyze-Vignette.html | 4319 +++++----- OlinkAnalyze-5.0.2/OlinkAnalyze/man/clean_npx.Rd | 2 OlinkAnalyze-5.0.2/OlinkAnalyze/man/figures/OA_v5.0_flowchart.png |only OlinkAnalyze-5.0.2/OlinkAnalyze/man/figures/logo.html | 2 OlinkAnalyze-5.0.2/OlinkAnalyze/man/mapping_file_id.Rd | 38 OlinkAnalyze-5.0.2/OlinkAnalyze/man/norm_internal_adjust.Rd | 102 OlinkAnalyze-5.0.2/OlinkAnalyze/man/norm_internal_adjust_not_ref.Rd | 62 OlinkAnalyze-5.0.2/OlinkAnalyze/man/norm_internal_adjust_ref.Rd | 50 OlinkAnalyze-5.0.2/OlinkAnalyze/man/norm_internal_assay_median.Rd | 78 OlinkAnalyze-5.0.2/OlinkAnalyze/man/norm_internal_bridge.Rd | 88 OlinkAnalyze-5.0.2/OlinkAnalyze/man/norm_internal_cross_product.Rd | 120 OlinkAnalyze-5.0.2/OlinkAnalyze/man/norm_internal_reference_median.Rd | 74 OlinkAnalyze-5.0.2/OlinkAnalyze/man/norm_internal_rename_cols.Rd | 62 OlinkAnalyze-5.0.2/OlinkAnalyze/man/norm_internal_subset.Rd | 100 OlinkAnalyze-5.0.2/OlinkAnalyze/man/norm_internal_update_maxlod.Rd | 40 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_color_discrete.Rd | 2 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_color_gradient.Rd | 2 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_fill_discrete.Rd | 2 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_fill_gradient.Rd | 2 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_format_oid_no_overlap.Rd | 52 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_format_rm_ext_ctrl.Rd | 58 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_iqr.Rd | 46 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_lmer.Rd | 10 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_lmer_posthoc.Rd | 4 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_median.Rd | 42 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_median_iqr_outlier.Rd | 48 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_norm_input_ref_medians.Rd | 42 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_norm_input_validate.Rd | 108 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_norm_product_id.Rd | 50 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_norm_reference_id.Rd | 54 OlinkAnalyze-5.0.2/OlinkAnalyze/man/olink_pal.Rd | 2 OlinkAnalyze-5.0.2/OlinkAnalyze/man/read_npx_delim_long.Rd | 2 OlinkAnalyze-5.0.2/OlinkAnalyze/man/read_npx_delim_wide.Rd | 2 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-Olink_one_non_parametric.R | 190 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-check_npx.R | 67 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-clean_npx.R | 139 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-dist_plot.R | 218 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-npxProcessing.R | 4 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-olink_boxplot.R | 532 - OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-olink_bridge_selector.R | 569 - OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-olink_lmer.R | 196 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-olink_normalization.R | 507 - OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-olink_normalization_product.R | 315 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-olink_pathway_enrichment.R | 512 - OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-olink_qc_plot.R | 37 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-olink_wilcox.R | 28 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-plot_heatmap.R | 178 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-plot_heatmap_helper.R | 110 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-plot_is_bridgeable.R | 643 + OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-plot_point_range.R | 6 OlinkAnalyze-5.0.2/OlinkAnalyze/tests/testthat/test-plot_umap.R | 20 OlinkAnalyze-5.0.2/OlinkAnalyze/vignettes/OlinkAnalyze-Vignette.Rmd | 1763 ++-- 96 files changed, 9628 insertions(+), 6637 deletions(-)
Title: Analysis of Copy Number Signatures
Description: A workflow to generate and analyze signatures based on copy number
data using non-negative matrix factorization (NMF) in an approach similar
to that used in mutational signatures. It can be used to extract features
from Copy number segment data and use that to find a subset of copy number
signatures which can be further used to correlate with other relevant data.
For more on 'NMF' see Gaujoux (2013) <doi:10.1186/1471-2105-11-367>.
Author: David Tallman [aut],
Shawn Striker [cre, ctb],
Daniel Stover [cph]
Maintainer: Shawn Striker <striker.35@osu.edu>
Diff between CNSigs versions 0.1.0 dated 2026-01-08 and 0.1.1 dated 2026-06-23
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- NEWS.md |only R/findExposures.R | 6 +++--- build/vignette.rds |binary inst/doc/CNSigs.pdf |binary man/findExposures.Rd | 2 +- 7 files changed, 16 insertions(+), 15 deletions(-)
Title: Sequential Trial Emulation
Description: Implementation of sequential trial emulation for the analysis of observational databases.
The 'SEQTaRget' software accommodates time-varying treatments and confounders, as well as binary
and failure time outcomes. 'SEQTaRget' allows to compare both static and dynamic strategies,
can be used to estimate observational analogs of intention-to-treat
and per-protocol effects, and can adjust for potential selection bias
induced by losses-to-follow-up. (Paper to come).
Author: Ryan O'Dea [aut, cre] ,
Alejandro Szmulewicz [aut] ,
Tom Palmer [aut] ,
Paul Madley-Dowd [aut] ,
Miguel Hernan [aut] ,
The President and Fellows of Harvard College [cph]
Maintainer: Ryan O'Dea <ryan.odea@psi.ch>
Diff between SEQTaRget versions 1.4.2 dated 2026-05-21 and 1.4.3 dated 2026-06-23
DESCRIPTION | 6 MD5 | 68 ++-- NAMESPACE | 5 NEWS.md | 43 ++ R/SEQestimate.R | 9 R/SEQexpand.R | 43 +- R/SEQopts.R | 32 +- R/SEQuential.R | 126 ++++++- R/class_definitions.R | 2 R/class_methods.R | 73 +++- R/class_setters.R | 15 R/internal_analysis.R | 46 ++ R/internal_covariates.R | 5 R/internal_hazard.R | 57 ++- R/internal_misc.R | 101 +++++- R/internal_survival.R | 25 - R/internal_weights.R | 46 ++ build/vignette.rds |binary inst/doc/ITT.html | 3 inst/doc/SEQuential.html | 646 +++++++++++++++++++---------------------- inst/doc/censoring.html | 3 inst/doc/doseresponse.html | 3 man/SEQestimate.Rd | 8 man/SEQopts.Rd | 24 - man/SEQoutput-class.Rd | 2 man/SEQuential.Rd | 40 +- man/bootstrap_id_relabeler.Rd |only man/diagnostics.Rd | 13 man/followup.table.Rd |only man/risk_comparison.Rd | 9 tests/testthat/test_coverage.R | 249 +++++++++++++++ tests/testthat/test_hazard.R | 103 ++++++ tests/testthat/test_misc.R | 155 +++++++++ tests/testthat/test_setters.R | 22 + tests/testthat/test_survival.R | 43 ++ tests/testthat/test_warnings.R | 22 + 36 files changed, 1499 insertions(+), 548 deletions(-)
Title: Visually Exploring Random Forests
Description: Graphic elements for exploring Random Forests using the
'randomForest' or 'randomForestSRC' package for survival, regression
and classification forests and 'ggplot2' package plotting. Implements
visualisations of the methods described in Breiman (2001)
<doi:10.1023/A:1010933404324> and Ishwaran, Kogalur, Blackstone, and
Lauer (2008) <doi:10.1214/08-AOAS169>.
Author: John Ehrlinger [aut, cre]
Maintainer: John Ehrlinger <john.ehrlinger@gmail.com>
Diff between ggRandomForests versions 3.1.2 dated 2026-06-13 and 3.2.0 dated 2026-06-23
DESCRIPTION | 12 - MD5 | 23 +- NEWS.md | 39 ++++ R/gg_partial_varpro.R | 183 ++++++++++++++++++++- R/gg_partialpro.R | 15 - R/gg_varpro.R | 24 ++ inst/doc/ggRandomForests-regression.html | 34 ++-- inst/doc/ggRandomForests-survival.html | 40 ++-- inst/doc/ggRandomForests.html | 4 inst/doc/varpro.html | 4 man/gg_partial_varpro.Rd | 88 ++++++++-- tests/testthat/test_gg_partial_varpro.R | 193 ++++++++++++++++++++++- tests/testthat/test_gg_varpro_empty_importance.R |only 13 files changed, 557 insertions(+), 102 deletions(-)
More information about ggRandomForests at CRAN
Permanent link
Title: Triangle Meshes and Related Geometry Tools
Description: Generate planar and spherical triangle meshes,
compute finite element calculations for 1-, 2-, and 3-dimensional flat
and curved manifolds with associated basis function spaces, methods for
lines and polygons, and transparent handling of coordinate reference
systems and coordinate transformation, including 'sf' and 'sp' geometries.
The core 'fmesher' library code was originally part of the 'INLA' package,
and implements parts of "Triangulations and Applications" by
Hjelle and Daehlen (2006) <doi:10.1007/3-540-33261-8>.
Author: Finn Lindgren [aut, cre, cph] ,
Seaton Andy [ctb] ,
Suen Man Ho [ctb] ,
Fabian E. Bachl [ctb]
Maintainer: Finn Lindgren <finn.lindgren@gmail.com>
Diff between fmesher versions 0.7.0 dated 2026-02-19 and 0.8.0 dated 2026-06-23
fmesher-0.7.0/fmesher/man/fm_nonconvex_hull_inla.Rd |only fmesher-0.8.0/fmesher/DESCRIPTION | 8 fmesher-0.8.0/fmesher/MD5 | 167 ++--- fmesher-0.8.0/fmesher/NAMESPACE | 5 fmesher-0.8.0/fmesher/NEWS.md | 70 +- fmesher-0.8.0/fmesher/R/basis.R | 31 - fmesher-0.8.0/fmesher/R/crs.R | 42 - fmesher-0.8.0/fmesher/R/deprecated.R | 4 fmesher-0.8.0/fmesher/R/diameter.R | 26 fmesher-0.8.0/fmesher/R/evaluator.R | 21 fmesher-0.8.0/fmesher/R/fem.R | 57 +- fmesher-0.8.0/fmesher/R/integration.R | 284 +++++----- fmesher-0.8.0/fmesher/R/lattice_Nd.R | 4 fmesher-0.8.0/fmesher/R/matern.R | 8 fmesher-0.8.0/fmesher/R/mesh.R | 5 fmesher-0.8.0/fmesher/R/mesh_2d.R | 32 - fmesher-0.8.0/fmesher/R/nonconvex_hull.R | 12 fmesher-0.8.0/fmesher/R/plot.R | 10 fmesher-0.8.0/fmesher/R/segm.R | 52 - fmesher-0.8.0/fmesher/R/sf_mesh.R | 2 fmesher-0.8.0/fmesher/R/simplify.R | 4 fmesher-0.8.0/fmesher/R/sp_mesh.R | 14 fmesher-0.8.0/fmesher/R/split_lines.R | 2 fmesher-0.8.0/fmesher/R/utils.R | 7 fmesher-0.8.0/fmesher/README.md | 65 -- fmesher-0.8.0/fmesher/build/partial.rdb |binary fmesher-0.8.0/fmesher/build/vignette.rds |binary fmesher-0.8.0/fmesher/inst/doc/basic_use.html | 12 fmesher-0.8.0/fmesher/inst/doc/fmesher_library.html | 3 fmesher-0.8.0/fmesher/inst/doc/variable_mesh_quality.html | 16 fmesher-0.8.0/fmesher/man/call-stack.Rd | 4 fmesher-0.8.0/fmesher/man/figures/README-example1-plot-1.png |binary fmesher-0.8.0/fmesher/man/figures/README-example2-plot-1.png |binary fmesher-0.8.0/fmesher/man/figures/README-example2hex-plot-1.png |binary fmesher-0.8.0/fmesher/man/fm_CRS_sp.Rd | 5 fmesher-0.8.0/fmesher/man/fm_as_collect.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_as_fm.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_as_lattice_2d.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_as_lattice_Nd.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_as_mesh_1d.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_as_mesh_2d.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_as_mesh_3d.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_as_segm.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_as_sfc.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_as_tensor.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_collect.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_contains.Rd | 2 fmesher-0.8.0/fmesher/man/fm_cprod.Rd | 2 fmesher-0.8.0/fmesher/man/fm_diameter.Rd | 18 fmesher-0.8.0/fmesher/man/fm_evaluate.Rd | 21 fmesher-0.8.0/fmesher/man/fm_fem.Rd | 27 fmesher-0.8.0/fmesher/man/fm_int.Rd | 13 fmesher-0.8.0/fmesher/man/fm_int_mesh_2d.Rd | 5 fmesher-0.8.0/fmesher/man/fm_lattice_2d.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_lattice_Nd.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_mesh_1d.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_mesh_2d.Rd | 49 - fmesher-0.8.0/fmesher/man/fm_nonconvex_hull.Rd | 19 fmesher-0.8.0/fmesher/man/fm_rcdt_2d.Rd | 13 fmesher-0.8.0/fmesher/man/fm_segm.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_segm_contour_helper.Rd | 6 fmesher-0.8.0/fmesher/man/fm_simplify.Rd | 36 - fmesher-0.8.0/fmesher/man/fm_simplify_helper.Rd | 8 fmesher-0.8.0/fmesher/man/fm_subset.Rd | 3 fmesher-0.8.0/fmesher/man/fm_tensor.Rd | 36 - fmesher-0.8.0/fmesher/man/fmesher-deprecated.Rd | 93 ++- fmesher-0.8.0/fmesher/man/fmesher-package.Rd | 5 fmesher-0.8.0/fmesher/man/fmesher_sparse.Rd | 3 fmesher-0.8.0/fmesher/src/Rcpp_interface.cc | 2 fmesher-0.8.0/fmesher/src/ioutils.h | 20 fmesher-0.8.0/fmesher/src/locator.h | 5 fmesher-0.8.0/fmesher/src/locator_t.h | 2 fmesher-0.8.0/fmesher/src/mesh.h | 10 fmesher-0.8.0/fmesher/src/mesh3.h | 6 fmesher-0.8.0/fmesher/src/meshc.cc | 12 fmesher-0.8.0/fmesher/src/meshc.h | 30 - fmesher-0.8.0/fmesher/src/trees.h | 6 fmesher-0.8.0/fmesher/src/trees_t.h | 2 fmesher-0.8.0/fmesher/src/vector.h | 18 fmesher-0.8.0/fmesher/src/vector_t.h | 12 fmesher-0.8.0/fmesher/tests/testthat/test-01-integration.R | 16 fmesher-0.8.0/fmesher/tests/testthat/test-02-rcdt_2d.R | 28 fmesher-0.8.0/fmesher/tests/testthat/test-fem.R | 4 fmesher-0.8.0/fmesher/tests/testthat/test-subdivide.R | 3 fmesher-0.8.0/fmesher/tests/testthat/test-utils.R | 9 85 files changed, 1109 insertions(+), 947 deletions(-)
Title: Exponential-Family Random Network Models
Description: Estimation of fully and partially observed Exponential-Family Random Network Models (ERNM). Exponential-family Random Graph Models (ERGM) and Gibbs Fields are special cases of ERNMs and can also be estimated with the package. Please cite Fellows and Handcock (2012), "Exponential-family Random Network Models" available at <doi:10.48550/arXiv.1208.0121>.
Author: Ian Fellows [aut],
Duncan Clark [aut, cre]
Maintainer: Duncan Clark <dac6@williams.edu>
Diff between ernm versions 1.0.4 dated 2025-10-14 and 1.0.5 dated 2026-06-23
DESCRIPTION | 10 ++-- MD5 | 18 ++++---- NAMESPACE | 1 R/ernm-gof.R | 46 ++++++++++++++++----- R/zzz.R | 1 inst/examplePackage/ErnmExtension/src/Makevars | 28 ------------ inst/examplePackage/ErnmExtension/src/Makevars.win | 4 - man/ernm_gof.Rd | 7 ++- src/Makevars | 26 ----------- src/Makevars.win | 2 10 files changed, 57 insertions(+), 86 deletions(-)
Title: Vectorised Probability Distributions
Description: Vectorised distribution objects with tools for manipulating,
visualising, and using probability distributions. Designed to allow model
prediction outputs to return distributions rather than their parameters,
allowing users to directly interact with predictive distributions in a
data-oriented workflow. In addition to providing generic replacements for
p/d/q/r functions, other useful statistics can be computed including means,
variances, intervals, and highest density regions.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Matthew Kay [aut] ,
Alex Hayes [aut] ,
Rob Hyndman [aut] ,
Earo Wang [ctb] ,
Vencislav Popov [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between distributional versions 0.7.1 dated 2026-06-11 and 0.8.0 dated 2026-06-23
distributional-0.7.1/distributional/man/dist_percentile.Rd |only distributional-0.8.0/distributional/DESCRIPTION | 6 distributional-0.8.0/distributional/MD5 | 27 distributional-0.8.0/distributional/NAMESPACE | 35 - distributional-0.8.0/distributional/NEWS.md | 22 distributional-0.8.0/distributional/R/default.R | 14 distributional-0.8.0/distributional/R/dist_convolved.R |only distributional-0.8.0/distributional/R/dist_mixture.R | 348 +++++++--- distributional-0.8.0/distributional/R/dist_normal.R | 6 distributional-0.8.0/distributional/R/dist_percentile.R | 102 +- distributional-0.8.0/distributional/R/dist_transformed.R | 8 distributional-0.8.0/distributional/man/dist_convolved.Rd |only distributional-0.8.0/distributional/man/dist_mixture.Rd | 72 +- distributional-0.8.0/distributional/man/dist_quantile.Rd |only distributional-0.8.0/distributional/tests/testthat/test-dist-convolved.R |only distributional-0.8.0/distributional/tests/testthat/test-dist-percentile.R | 2 distributional-0.8.0/distributional/tests/testthat/test-mixture.R | 75 ++ 17 files changed, 557 insertions(+), 160 deletions(-)
More information about distributional at CRAN
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Title: Bayes Factor Design for Two-Arm Binomial Trials
Description: Design and analysis of one- and two-stage binomial
clinical phase II trials using Bayes factors. Implements Bayes factors
for point-null and directional hypotheses, predictive densities under
different hypotheses, and power and sample size calibration. Both one-arm
trials with only a single treatment arm and two-arm trials with treatment
and control arm are implemented for the one- and two-stage designs.
Author: Riko Kelter [aut, cre]
Maintainer: Riko Kelter <rkelter@uni-koeln.de>
Diff between bfbin2arm versions 0.1.3 dated 2026-06-01 and 0.1.4 dated 2026-06-23
bfbin2arm-0.1.3/bfbin2arm/tests/testthat/test-singlearm-ce-correction.R |only bfbin2arm-0.1.3/bfbin2arm/tests/testthat/test-singlearm-table6_2.R |only bfbin2arm-0.1.4/bfbin2arm/DESCRIPTION | 19 bfbin2arm-0.1.4/bfbin2arm/MD5 | 161 ++- bfbin2arm-0.1.4/bfbin2arm/NAMESPACE | 6 bfbin2arm-0.1.4/bfbin2arm/R/design_singlearm_onestage_rope.R |only bfbin2arm-0.1.4/bfbin2arm/R/s3-singlearm_bf_onestage_design.R | 15 bfbin2arm-0.1.4/bfbin2arm/R/s3-singlearm_rope_onestage.R |only bfbin2arm-0.1.4/bfbin2arm/R/utils_rope.R |only bfbin2arm-0.1.4/bfbin2arm/build/vignette.rds |binary bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-overview.R |only bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-overview.Rmd | 53 - bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-overview.html | 55 - bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-rope-singlearm-onestage-calibration.R |only bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-rope-singlearm-onestage-calibration.Rmd |only bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-rope-singlearm-onestage-calibration.html |only bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-rope-singlearm-onestage-design.R |only bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-rope-singlearm-onestage-design.Rmd |only bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-rope-singlearm-onestage-design.html |only bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm-onestage.R | 17 bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm-onestage.Rmd | 35 bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm-onestage.html | 82 +- bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm-twostage_bayesian.R | 19 bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm-twostage_bayesian.Rmd | 40 bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm-twostage_bayesian.html | 98 -- bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_frequentist.R | 13 bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_frequentist.Rmd | 59 - bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_frequentist.html | 66 - bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_full.R | 15 bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_full.Rmd | 81 +- bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_full.html | 78 + bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_hybrid.R | 13 bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_hybrid.Rmd | 68 - bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_hybrid.html | 141 +-- bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-twoarm-twostage_Bayesian.R | 28 bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-twoarm-twostage_Bayesian.Rmd | 181 ++-- bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-twoarm-twostage_Bayesian.html | 404 +++++----- bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-twoarm_onestage_Bayesian.R | 12 bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-twoarm_onestage_Bayesian.Rmd | 35 bfbin2arm-0.1.4/bfbin2arm/inst/doc/bfbin2arm-twoarm_onestage_Bayesian.html | 157 ++- bfbin2arm-0.1.4/bfbin2arm/man/bfbin2arm.Rd | 4 bfbin2arm-0.1.4/bfbin2arm/man/design_singlearm_onestage_rope.Rd |only bfbin2arm-0.1.4/bfbin2arm/man/figures |only bfbin2arm-0.1.4/bfbin2arm/tests/testthat/test-design_singlearm_onestage_rope.R |only bfbin2arm-0.1.4/bfbin2arm/tests/testthat/test-powerbinbf01seq.R | 10 bfbin2arm-0.1.4/bfbin2arm/tests/testthat/test-singlearm-helpers.R | 12 bfbin2arm-0.1.4/bfbin2arm/tests/testthat/test-singlearm-seq-identities.R | 18 bfbin2arm-0.1.4/bfbin2arm/vignettes/bfbin2arm-overview.Rmd | 53 - 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Title: Optimal Stratification of Univariate Populations
Description: The stratification of univariate populations under stratified sampling designs is implemented according to Khan et al. (2002) <doi:10.1177/0008068320020518> and Khan et al. (2015) <doi:10.1080/02664763.2015.1018674> in this library. It determines the Optimum Strata Boundaries (OSB) and Optimum Sample Sizes (OSS) for the study variable, y, using the best-fit frequency distribution of a survey variable (if data is available) or a hypothetical distribution (if data is not available). The method formulates the problem of determining the OSB as mathematical programming problem which is solved by using a dynamic programming technique. If a dataset of the population is available to the surveyor, the method estimates its best-fit distribution and determines the OSB and OSS under Neyman allocation directly. When the dataset is not available, stratification is made based on the assumption that the values of the study variable, y, are available as hypothetical realizations of proxy va [...truncated...]
Author: Karuna G. Reddy [aut, cre],
M. G. M. Khan [aut]
Maintainer: Karuna G. Reddy <karuna.reddy@auckland.ac.nz>
This is a re-admission after prior archival of version 1.0-4 dated 2025-02-23
Diff between stratifyR versions 1.0-4 dated 2025-02-23 and 1.0-5 dated 2026-06-23
stratifyR-1.0-4/stratifyR/tests |only stratifyR-1.0-5/stratifyR/DESCRIPTION | 22 stratifyR-1.0-5/stratifyR/MD5 | 84 stratifyR-1.0-5/stratifyR/NAMESPACE | 13 stratifyR-1.0-5/stratifyR/NEWS.md |only stratifyR-1.0-5/stratifyR/R/create.mat.R | 73 stratifyR-1.0-5/stratifyR/R/data.R | 216 stratifyR-1.0-5/stratifyR/R/data.alloc.R | 163 stratifyR-1.0-5/stratifyR/R/data.optim.R | 213 stratifyR-1.0-5/stratifyR/R/data.root.R | 542 +- stratifyR-1.0-5/stratifyR/R/distr.alloc.R | 1015 +-- stratifyR-1.0-5/stratifyR/R/distr.optim.R | 210 stratifyR-1.0-5/stratifyR/R/distr.root.R | 518 + stratifyR-1.0-5/stratifyR/R/erf.R | 64 stratifyR-1.0-5/stratifyR/R/get.dist.R | 293 - stratifyR-1.0-5/stratifyR/R/import.R |only stratifyR-1.0-5/stratifyR/R/minim.val.R | 40 stratifyR-1.0-5/stratifyR/R/mode.val.r | 34 stratifyR-1.0-5/stratifyR/R/realloc.R | 104 stratifyR-1.0-5/stratifyR/R/strata.data.R | 307 - stratifyR-1.0-5/stratifyR/R/strata.distr.R | 498 - stratifyR-1.0-5/stratifyR/R/summary.strata.R | 314 - stratifyR-1.0-5/stratifyR/README.md |only stratifyR-1.0-5/stratifyR/build/vignette.rds |binary stratifyR-1.0-5/stratifyR/inst/doc/stratifyR-vignette.R | 52 stratifyR-1.0-5/stratifyR/inst/doc/stratifyR-vignette.Rmd | 2131 ++++--- stratifyR-1.0-5/stratifyR/inst/doc/stratifyR-vignette.html | 3471 +++++++++++-- stratifyR-1.0-5/stratifyR/man/anaemia.Rd | 73 stratifyR-1.0-5/stratifyR/man/create.mat.Rd | 4 stratifyR-1.0-5/stratifyR/man/data.alloc.Rd | 25 stratifyR-1.0-5/stratifyR/man/data.optim.Rd | 2 stratifyR-1.0-5/stratifyR/man/data.root.Rd | 22 stratifyR-1.0-5/stratifyR/man/distr.alloc.Rd | 16 stratifyR-1.0-5/stratifyR/man/distr.optim.Rd | 2 stratifyR-1.0-5/stratifyR/man/distr.root.Rd | 23 stratifyR-1.0-5/stratifyR/man/erf.Rd | 2 stratifyR-1.0-5/stratifyR/man/get.dist.Rd | 34 stratifyR-1.0-5/stratifyR/man/minim.val.Rd | 2 stratifyR-1.0-5/stratifyR/man/mode.val.Rd | 2 stratifyR-1.0-5/stratifyR/man/realloc.Rd | 2 stratifyR-1.0-5/stratifyR/man/strata.data.Rd | 69 stratifyR-1.0-5/stratifyR/man/strata.distr.Rd | 4 stratifyR-1.0-5/stratifyR/man/summary.strata.Rd | 38 stratifyR-1.0-5/stratifyR/vignettes/stratifyR-vignette.Rmd | 2131 ++++--- 44 files changed, 7704 insertions(+), 5124 deletions(-)
Title: Plant Phenotyping and Bayesian Statistics
Description: Analyse common types of plant phenotyping data, provide a simplified interface
to longitudinal growth modeling and select Bayesian statistics,
and streamline use of 'PlantCV' output.
Several Bayesian methods and reporting guidelines for Bayesian methods are described in
Kruschke (2018) <doi:10.1177/2515245918771304>,
Kruschke (2013) <doi:10.1037/a0029146>, and Kruschke (2021) <doi:10.1038/s41562-021-01177-7>.
Author: Josh Sumner [aut, cre] ,
Jeffrey Berry [aut] ,
Noah Fahlgren [rev] ,
Donald Danforth Plant Science Center [cph]
Maintainer: Josh Sumner <jsumner@danforthcenter.org>
Diff between pcvr versions 1.3.1 dated 2025-08-18 and 1.4.1 dated 2026-06-23
DESCRIPTION | 10 MD5 | 115 + NAMESPACE | 6 NEWS.md | 4 R/barg.R | 21 R/brmPlot.R | 14 R/brmSurvPlot.R | 14 R/brmViolin.R | 13 R/bwtime.R | 3 R/combineDraws.R | 26 R/conjugate.R | 91 + R/conjugate_BernoulliHelpers.R | 12 R/conjugate_bayes_factors.R | 13 R/conjugate_betaHelpers.R | 20 R/conjugate_binomialHelpers.R | 12 R/conjugate_bivariate_gaussianHelpers.R | 2 R/conjugate_bivariate_lognormalHelpers.R | 2 R/conjugate_bivariate_uniformHelpers.R | 4 R/conjugate_class.R | 19 R/conjugate_exponentialHelpers.R | 2 R/conjugate_gammaHelpers.R | 3 R/conjugate_gaussianHelpers.R | 4 R/conjugate_logNormal2Helpers.R | 4 R/conjugate_logNormalHelpers.R | 7 R/conjugate_multinomialHelpers.R |only R/conjugate_negBinHelpers.R | 15 R/conjugate_paretoHelpers.R | 4 R/conjugate_plot.R | 3 R/conjugate_poissonHelpers.R | 7 R/conjugate_tHelpers.R | 4 R/conjugate_uniformHelpers.R | 4 R/conjugate_vonmises2Helpers.R | 22 R/conjugate_vonmisesHelpers.R | 22 R/frem.R | 41 R/growthSS.R | 8 R/mvSS.R | 12 R/nlmePlot.R | 5 R/pcvr-package.R |only R/pcvrss.R | 2 R/pcvsubread.R | 6 R/stat_brms_model.R |only R/stat_growthSS.R |only R/stat_nlme_model.R |only R/stat_nlrq_model.R |only R/stat_nls_model.R |only inst/doc/longitudinal.html | 1789 +++++++++++-------------------- inst/doc/pcvr.html | 1390 +++++++++--------------- inst/doc/roots.html | 1122 ++++++++----------- man/barg.Rd | 21 man/brmPlot.Rd | 13 man/brmSurvPlot.Rd | 13 man/brmViolin.Rd | 13 man/combineDraws.Rd | 23 man/conjugate.Rd | 63 - man/growthSS.Rd | 8 man/mvSS.Rd | 12 man/pcvr-package.Rd |only man/statBrmsMod.Rd |only man/statNlsMod.Rd |only man/stat_growthss.Rd |only tests/testthat/test-brmsModels.R | 9 tests/testthat/test-growthModels.R | 20 tests/testthat/test-mvSSModels.R | 20 tests/testthat/test-sv-conjugate.R | 48 64 files changed, 2266 insertions(+), 2874 deletions(-)
Title: High Dimensional Time Series Analysis Tools
Description: An implementation for high-dimensional time series analysis methods, including factor model for vector time series
proposed by Lam and Yao (2012) <doi:10.1214/12-AOS970> and Chang, Guo and Yao (2015)
<doi:10.1016/j.jeconom.2015.03.024>, martingale difference test proposed by
Chang, Jiang and Shao (2023) <doi:10.1016/j.jeconom.2022.09.001>, principal
component analysis for vector time series proposed by Chang, Guo and Yao (2018) <doi:10.1214/17-AOS1613>,
cointegration analysis proposed by Zhang, Robinson and Yao (2019)
<doi:10.1080/01621459.2018.1458620>, unit root test proposed by Chang, Cheng and Yao (2022)
<doi:10.1093/biomet/asab034>, white noise tests proposed by Chang, Yao and Zhou (2017)
<doi:10.1093/biomet/asw066> and Chang et al. (2026+), CP-decomposition for matrix time
series proposed by Chang et al. (2023) <doi:10.1093/jrsssb/qkac011> and
Chang et al. (2026+) <doi:10.48550/arXiv.2410.05634>, CP-decomposition for tensor ti [...truncated...]
Author: Jinyuan Chang [aut],
Jing He [aut],
Chen Lin [aut, cre],
Qiwei Yao [aut]
Maintainer: Chen Lin <linchen@smail.swufe.edu.cn>
Diff between HDTSA versions 1.0.6 dated 2026-04-03 and 1.0.6-1 dated 2026-06-23
DESCRIPTION | 13 MD5 | 17 NAMESPACE | 3 R/CP_functions_unified.R | 1901 +++++++++++++++++++++++++++- R/data.R | 43 data/BeijingAir.rda |only data/datalist |only man/CP_Inference.Rd |only man/CP_MTS.Rd | 12 man/CP_TTS.Rd |only man/DGP.CP.Rd | 20 man/Processed-Beijing-air-pollution-data.Rd |only 12 files changed, 1945 insertions(+), 64 deletions(-)
Title: Spatial Data Operations for Database-Backed Geometries
Description: Provides database-backed spatial geometry classes and methods for
working with vector spatial data in 'DuckDB'. The package supports loading,
converting, querying, joining, and measuring spatial geometries through
familiar 'sf'-style interfaces while keeping geometry columns lazy inside
the database. It integrates with 'dbProject' to preserve database paths,
live connections, and spatial table metadata across interactive sessions.
The package follows the Simple Features framework described by Pebesma
(2018) <doi:10.32614/RJ-2018-009> and uses DuckDB's spatial extension
<https://duckdb.org/docs/stable/core_extensions/spatial/overview.html>.
Author: Edward C. Ruiz [aut, cre] ,
Jiaji George Chen [aut],
Ruben Dries [aut, rev]
Maintainer: Edward C. Ruiz <ecr7407@gmail.com>
Diff between dbSpatial versions 0.1.1 dated 2026-05-27 and 0.1.2 dated 2026-06-23
DESCRIPTION | 6 GPL-3 | 1348 ++++++++++++++++---------------- LICENSE | 4 MD5 | 171 ++-- NAMESPACE | 136 +-- NEWS.md | 650 +++++++-------- R/accessors.R | 58 - R/as_dbSpatial.R | 186 ++-- R/classes.R | 18 R/coerce.R | 82 - R/constructors.R | 34 R/dbSpatial.R | 476 +++++------ R/extract.R | 112 +- R/generics.R | 906 ++++++++++----------- R/geometry_ops.R | 140 +-- R/global.R | 28 R/imports.R | 66 - R/input_validation.R | 112 +- R/loadSpatial.R | 65 + R/measurements.R | 46 - R/show.R | 110 +- R/sim_dbSpatial.R | 120 +- R/sql_gen.R | 146 +-- R/st_as_sf.R | 114 +- R/st_bbox.R | 100 +- R/st_geometry_type.R | 24 R/st_geometrytype.R | 92 +- R/st_is_valid.R | 24 R/st_join.R | 188 ++-- R/st_read.R | 166 +-- R/st_spatial_join.R | 186 ++-- R/st_translate.R | 50 - R/st_xmax.R | 46 - R/st_ymax.R | 46 - R/utils.R | 74 - R/vect.R | 86 +- README.md | 150 +-- build/vignette.rds |binary inst/doc/class_structure.R | 42 inst/doc/class_structure.Rmd | 106 +- inst/doc/class_structure.html | 215 ++--- inst/doc/getting_started.R | 87 +- inst/doc/getting_started.Rmd | 157 +-- inst/doc/getting_started.html | 280 ++---- inst/doc/spatial_operations.R | 66 - inst/doc/spatial_operations.Rmd | 152 +-- inst/doc/spatial_operations.html | 278 ++---- man/as_dbSpatial.Rd | 126 +- man/cash-dbSpatial-method.Rd | 38 man/dbSpatial.Rd | 186 ++-- man/dbSpatial_options.Rd | 58 - man/dot-sim_dbSpatial.Rd | 48 - man/dot-st_read.Rd | 98 +- man/dot-st_spatial_join.Rd | 102 +- man/head.Rd | 52 - man/loadSpatial.Rd | 62 - man/show.Rd | 44 - man/st_area.Rd | 88 +- man/st_as_geojson.Rd | 90 +- man/st_as_sf.dbSpatial.Rd | 80 - man/st_as_text.Rd | 68 - man/st_bbox.Rd | 52 - man/st_buffer.Rd | 74 - man/st_centroid.Rd | 84 - man/st_geometrytype.Rd | 60 - man/st_join.dbSpatial.Rd | 116 +- man/st_length.Rd | 84 - man/st_npoints.Rd | 98 +- man/st_perimeter.Rd | 88 +- man/st_simplify.Rd | 88 +- man/st_translate.Rd | 120 +- man/st_x.Rd | 92 +- man/st_xmax.Rd | 122 +- man/st_y.Rd | 92 +- man/st_ymax.Rd | 120 +- man/tail.Rd | 52 - man/vect-dbSpatial-method.Rd | 90 +- tests/testthat.R | 8 tests/testthat/test-extract.R | 34 tests/testthat/test-spatial-functions.R | 271 +++--- vignettes/class_structure.Rmd | 106 +- vignettes/class_structure.md | 30 vignettes/getting_started.Rmd | 157 +-- vignettes/getting_started.md | 236 ++--- vignettes/spatial_operations.Rmd | 152 +-- vignettes/spatial_operations.md | 412 ++++----- vignettes/test_data.csv |only 87 files changed, 5904 insertions(+), 5823 deletions(-)
Title: Functions for Analysis of fMRI Datasets Stored in the ANALYZE or
'NIFTI' Format
Description: Functions for I/O, visualisation and analysis of functional Magnetic Resonance Imaging (fMRI) datasets stored in the ANALYZE or 'NIFTI' format. Note that the latest version of 'XQuartz' seems to be necessary under MacOS.
Author: Pierre Lafaye De Micheaux [aut, cre],
Jonathan L Marchini [aut],
Cleve Moler [cph] ,
Jack Dongarra [cph] ,
Richard Hanson [cph] ,
Sven Hammarling [cph] ,
Jeremy Du Croz [cph]
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between AnalyzeFMRI versions 1.1-25 dated 2025-07-24 and 1.1-26 dated 2026-06-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- inst/HISTORY | 12 ++++++++++++ src/slapack.unused | 46 +++++++++++++++++++++++----------------------- 4 files changed, 42 insertions(+), 30 deletions(-)
More information about BsplineQuantReg at CRAN
Permanent link
Title: Karl Broman's R Code
Description: Miscellaneous R functions, including functions related to
graphics (mostly for base graphics), permutation tests, running
mean/median, and general utilities.
Author: Karl W Broman [aut, cre] ,
Aimee Teo Broman [ctb]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between broman versions 0.94 dated 2026-06-08 and 0.96 dated 2026-06-23
broman-0.94/broman/R/align_stuff.R |only broman-0.94/broman/R/holmans_triangle.R |only broman-0.96/broman/DESCRIPTION | 8 +- broman-0.96/broman/MD5 | 82 ++++++++++++++-------------- broman-0.96/broman/NEWS.md | 20 ++++++ broman-0.96/broman/R/align_vectors.R |only broman-0.96/broman/R/arrowlocator.R | 2 broman-0.96/broman/R/broman-package.R | 5 + broman-0.96/broman/R/cf.R | 16 +++-- broman-0.96/broman/R/ciplot.R | 57 ++++++++++++------- broman-0.96/broman/R/histlines.R | 4 - broman-0.96/broman/R/manyboxplot.R | 7 +- broman-0.96/broman/R/mypairs.R | 25 ++++++-- broman-0.96/broman/R/not_in.R | 2 broman-0.96/broman/R/objectsizes.R | 2 broman-0.96/broman/R/rmvn.R | 12 +++- broman-0.96/broman/R/runningmean.R | 10 +-- broman-0.96/broman/R/strwidth2lines.R | 2 broman-0.96/broman/R/strwidth2xlim.R | 5 + broman-0.96/broman/R/triangle_plots.R |only broman-0.96/broman/R/venn_diagram.R | 4 - broman-0.96/broman/R/xlimlabel.R | 8 +- broman-0.96/broman/README.md |only broman-0.96/broman/man/align_vectors.Rd | 9 ++- broman-0.96/broman/man/arrowlocator.Rd | 2 broman-0.96/broman/man/broman-package.Rd | 6 ++ broman-0.96/broman/man/cf.Rd | 4 + broman-0.96/broman/man/ciplot.Rd | 15 +++++ broman-0.96/broman/man/histlines.Rd | 4 - broman-0.96/broman/man/manyboxplot.Rd | 7 +- broman-0.96/broman/man/mypairs.Rd | 22 +++++-- broman-0.96/broman/man/notin.Rd | 2 broman-0.96/broman/man/rmvn.Rd | 4 + broman-0.96/broman/man/runningmean.Rd | 6 +- broman-0.96/broman/man/runningratio.Rd | 4 - broman-0.96/broman/man/strwidth2lines.Rd | 3 + broman-0.96/broman/man/strwidth2xlim.Rd | 5 + broman-0.96/broman/man/triarrow.Rd | 12 ++-- broman-0.96/broman/man/trilines.Rd | 12 ++-- broman-0.96/broman/man/triplot.Rd | 12 ++-- broman-0.96/broman/man/tripoints.Rd | 12 ++-- broman-0.96/broman/man/tritext.Rd | 6 +- broman-0.96/broman/man/venn.Rd | 2 broman-0.96/broman/man/xlimlabel.Rd | 6 +- broman-0.96/broman/tests/testthat/test-cf.R |only 45 files changed, 272 insertions(+), 154 deletions(-)
Title: 'Yandex Clickhouse' Interface for R with Basic 'dplyr' Support
Description: 'Yandex Clickhouse' (<https://clickhouse.com/>) is a high-performance relational column-store database to enable
big data exploration and 'analytics' scaling to petabytes of data. Methods are
provided that enable working with 'Yandex Clickhouse' databases via
'DBI' methods and using 'dplyr'/'dbplyr' idioms.
Author: Christian Hotz-Behofsits [aut, cre],
Daniel Winkler [aut],
Luca Rauchenberger [aut],
Peter Knaus [aut],
Clemens Danninger [aut],
Daria Yudaeva [aut],
Simon Stiebellehner [aut],
Dan Egnor [aut],
Vlad Losev [aut],
Keith Ray [aut],
Zhanyong Wan [aut],
M [...truncated...]
Maintainer: Christian Hotz-Behofsits <christian.hotz-behofsits@wu.ac.at>
Diff between RClickhouse versions 0.6.10 dated 2025-02-26 and 0.6.11 dated 2026-06-23
RClickhouse-0.6.10/RClickhouse/inst/include/RClickhouse_RcppExports.h |only RClickhouse-0.6.11/RClickhouse/DESCRIPTION | 6 +++--- RClickhouse-0.6.11/RClickhouse/MD5 | 7 +++---- RClickhouse-0.6.11/RClickhouse/NAMESPACE | 2 ++ RClickhouse-0.6.11/RClickhouse/R/dplyr.R | 7 +++++++ 5 files changed, 15 insertions(+), 7 deletions(-)
Title: Calculating Optimal and D-Augmented Designs for Single- and
Multi-Factor Models
Description: Calculates D-, Ds-, A-, I- and L-optimal designs, weighted combinations of these via a Compound criterion, and KL-optimal designs for model discrimination, for non-linear single- and multi-factor models, via an implementation of the cocktail algorithm (Yu, 2011, <doi:10.1007/s11222-010-9183-2>). Multi-factor models use design variables x1, x2, … with a named-list design space; single-factor models remain backward compatible. Compares designs via their efficiency, augments any design with a controlled efficiency loss, and provides efficient rounding functions to convert approximate designs to exact ones.
Author: Carlos de la Calle-Arroyo [aut, cre] ,
Jesus Lopez-Fidalgo [aut] ,
Licesio J. Rodriguez-Aragon [aut]
Maintainer: Carlos de la Calle-Arroyo <carlos.calle.arroyo@gmail.com>
Diff between optedr versions 2.2.0 dated 2025-02-11 and 3.0.0 dated 2026-06-23
optedr-2.2.0/optedr/man/figures/README-pressure-1.png |only optedr-2.2.0/optedr/man/figures/README-unnamed-chunk-4-1.png |only optedr-2.2.0/optedr/man/figures/README-unnamed-chunk-4-2.png |only optedr-2.2.0/optedr/man/figures/README-unnamed-chunk-6-1.png |only optedr-2.2.0/optedr/tests/testthat/test-effiency.R |only optedr-3.0.0/optedr/DESCRIPTION | 32 optedr-3.0.0/optedr/MD5 | 125 - optedr-3.0.0/optedr/NAMESPACE | 3 optedr-3.0.0/optedr/NEWS.md | 115 optedr-3.0.0/optedr/R/augment.R | 1360 +++++------ optedr-3.0.0/optedr/R/crit_eff.R | 91 optedr-3.0.0/optedr/R/detect_design.R |only optedr-3.0.0/optedr/R/efficient_round.R | 213 + optedr-3.0.0/optedr/R/glm_families.R |only optedr-3.0.0/optedr/R/inf_mat_sens.R | 86 optedr-3.0.0/optedr/R/input_checks.R | 49 optedr-3.0.0/optedr/R/kl_optim.R |only optedr-3.0.0/optedr/R/shiny_examples.R | 129 - optedr-3.0.0/optedr/R/utils.R | 531 +++- optedr-3.0.0/optedr/R/wf_mult.R | 796 ++++-- optedr-3.0.0/optedr/README.md | 338 ++ optedr-3.0.0/optedr/build |only optedr-3.0.0/optedr/inst/CITATION | 4 optedr-3.0.0/optedr/inst/doc |only optedr-3.0.0/optedr/man/CWFMult.Rd |only optedr-3.0.0/optedr/man/DWFMult.Rd | 43 optedr-3.0.0/optedr/man/DsWFMult.Rd | 46 optedr-3.0.0/optedr/man/IWFMult.Rd | 57 optedr-3.0.0/optedr/man/KLWFMult.Rd |only optedr-3.0.0/optedr/man/WFMult.Rd | 62 optedr-3.0.0/optedr/man/augment_design.Rd | 30 optedr-3.0.0/optedr/man/check_inputs.Rd | 52 optedr-3.0.0/optedr/man/combinatorial_round.Rd | 34 optedr-3.0.0/optedr/man/crosspoints.Rd | 4 optedr-3.0.0/optedr/man/daugment_design.Rd | 26 optedr-3.0.0/optedr/man/detect_design_vars.Rd |only optedr-3.0.0/optedr/man/dsaugment_design.Rd | 15 optedr-3.0.0/optedr/man/efficient_round.Rd | 17 optedr-3.0.0/optedr/man/figures/README-augment-1.png |only optedr-3.0.0/optedr/man/figures/README-augment-add-1.png |only optedr-3.0.0/optedr/man/figures/README-kl-1.png |only optedr-3.0.0/optedr/man/figures/README-opt-plot-1.png |only optedr-3.0.0/optedr/man/findmax.Rd | 17 optedr-3.0.0/optedr/man/findmaxval.Rd | 14 optedr-3.0.0/optedr/man/findminval.Rd | 13 optedr-3.0.0/optedr/man/get_augment_region.Rd | 19 optedr-3.0.0/optedr/man/get_daugment_region.Rd | 15 optedr-3.0.0/optedr/man/get_dsaugment_region.Rd | 15 optedr-3.0.0/optedr/man/get_laugment_region.Rd | 15 optedr-3.0.0/optedr/man/laugment_design.Rd | 15 optedr-3.0.0/optedr/man/make_glm_family.Rd |only optedr-3.0.0/optedr/man/make_kl_fun.Rd |only optedr-3.0.0/optedr/man/opt_des.Rd | 150 - optedr-3.0.0/optedr/man/plot.optdes.Rd | 8 optedr-3.0.0/optedr/man/print.augment_region.Rd |only optedr-3.0.0/optedr/man/shiny_augment.Rd | 4 optedr-3.0.0/optedr/man/shiny_optimal.Rd | 4 optedr-3.0.0/optedr/man/weight_function.Rd | 2 optedr-3.0.0/optedr/tests/testthat/test-augment.R | 377 ++- optedr-3.0.0/optedr/tests/testthat/test-compound.R |only optedr-3.0.0/optedr/tests/testthat/test-crit_eff.R | 137 + optedr-3.0.0/optedr/tests/testthat/test-efficiency.R |only optedr-3.0.0/optedr/tests/testthat/test-inf_mat_sens.R | 137 + optedr-3.0.0/optedr/tests/testthat/test-input_checks.R | 149 + optedr-3.0.0/optedr/tests/testthat/test-kl.R |only optedr-3.0.0/optedr/tests/testthat/test-multifactor.R |only optedr-3.0.0/optedr/tests/testthat/test-opt_des.R | 120 optedr-3.0.0/optedr/tests/testthat/test-rounding.R | 125 - optedr-3.0.0/optedr/tests/testthat/test-utils.R | 177 + optedr-3.0.0/optedr/tests/testthat/test-wf_mult.R | 124 - optedr-3.0.0/optedr/vignettes |only 71 files changed, 4131 insertions(+), 1764 deletions(-)
Title: Dereplicate and Cherry-Pick Mass Spectrometry Spectra
Description: Convenient wrapper functions for the analysis of
matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF)
spectra data in order to select only representative spectra (also
called cherry-pick). The package covers the preprocessing and
dereplication steps (based on Strejcek, Smrhova, Junkova and Uhlik
(2018) <doi:10.3389/fmicb.2018.01294>) needed to cluster MALDI-TOF
spectra before the final cherry-picking step. It enables the easy
exclusion of spectra and/or clusters to accommodate complex
cherry-picking strategies. Alternatively, cherry-picking using
taxonomic identification MALDI-TOF data is made easy with functions to
import inconsistently formatted reports.
Author: Charlie Pauvert [aut, cre, cph] ,
David Wylensek [ctb] ,
Selina Nuechtern [ctb],
Thomas Clavel [ctb, fnd, cph]
Maintainer: Charlie Pauvert <cpauvert@ukaachen.de>
Diff between maldipickr versions 1.3.1 dated 2024-09-12 and 1.3.3 dated 2026-06-23
DESCRIPTION | 15 ++++---- MD5 | 24 +++++++------ NEWS.md | 21 +++++++++++ R/read_biotyper_report.R | 17 +++++++-- README.md | 35 +++++++++++-------- inst/CITATION | 11 +++-- inst/WORDLIST | 8 ++++ inst/biotyper_fixNA_51.csv |only inst/doc/dereplicate-bruker-maldi-biotyper-spectra.R | 18 ++++----- inst/doc/import-data-from-bruker-maldi-biotyper.html | 12 +++--- inst/doc/maldipickr.html | 16 ++++---- man/figures/maldipickr-graphical-abstract.png |only man/read_biotyper_report.Rd | 2 - tests/testthat/test-read_biotyper_report.R | 14 +++++++ 14 files changed, 129 insertions(+), 64 deletions(-)
Title: Forecast Reconciliation with Machine Learning
Description: Nonlinear forecast reconciliation with machine learning in
cross-sectional (Spiliotis et al. 2021 <doi:10.1016/j.asoc.2021.107756>),
temporal, and cross-temporal
(Rombouts et al. 2024 <doi:10.1016/j.ijforecast.2024.05.008>) frameworks.
Author: Daniele Girolimetto [aut, cre] ,
Yangzhuoran Fin Yang [aut] ,
Jeroen Rombouts [aut] ,
Ines Wilms [aut]
Maintainer: Daniele Girolimetto <daniele.girolimetto@unipd.it>
Diff between FoRecoML versions 1.0.0 dated 2026-04-21 and 1.1.0 dated 2026-06-23
DESCRIPTION | 6 +- MD5 | 34 +++++++------- NAMESPACE | 5 ++ NEWS.md | 6 ++ R/FoReco.R | 98 +++++++++++++++++++++++++++++++++++++++++++ R/FoRecoML-package.R | 1 R/csrml.R | 29 ++++++++---- R/ctrml.R | 39 ++++++++++------- R/terml.R | 30 ++++++++----- R/utils.R | 97 +++++++++++++++++++++++++++++++++++++----- README.md | 2 man/csrml.Rd | 16 ++++--- man/ctrml.Rd | 18 +++++-- man/extract_reconciled_ml.Rd | 7 ++- man/terml.Rd | 17 ++++--- tests/testthat/test-csrml.R | 3 + tests/testthat/test-ctrml.R | 3 + tests/testthat/test-terml.R | 3 + 18 files changed, 328 insertions(+), 86 deletions(-)
Title: Bayesian Inference Using 'RTMB'
Description: Provides tools for Markov chain Monte Carlo (MCMC) and Maximum A Posteriori (MAP) estimation utilizing the 'RTMB' package. It supports various statistical models including generalized linear mixed models, factor analysis, item response theory, and multidimensional unfolding. The package allows users to easily transition between frequentist and Bayesian paradigms using a unified interface. Automatic differentiation and Laplace approximation follow Kristensen et al. (2016) <doi:10.18637/jss.v070.i05>, and MCMC sampling uses the No-U-Turn Sampler described by Hoffman and Gelman (2014) <https://jmlr.org/papers/v15/hoffman14a.html>.
Author: Hiroshi Shimizu [aut, cre]
Maintainer: Hiroshi Shimizu <simizu706@gmail.com>
Diff between BayesRTMB versions 0.1.1 dated 2026-06-01 and 0.2.1 dated 2026-06-23
BayesRTMB-0.1.1/BayesRTMB/man/model_code.Rd |only BayesRTMB-0.1.1/BayesRTMB/man/with_rtmb_error_handling.Rd |only BayesRTMB-0.2.1/BayesRTMB/DESCRIPTION | 9 BayesRTMB-0.2.1/BayesRTMB/MD5 | 251 + BayesRTMB-0.2.1/BayesRTMB/NAMESPACE | 10 BayesRTMB-0.2.1/BayesRTMB/NEWS.md | 69 BayesRTMB-0.2.1/BayesRTMB/R/ADVI.R | 25 BayesRTMB-0.2.1/BayesRTMB/R/Base_Fit.R | 59 BayesRTMB-0.2.1/BayesRTMB/R/MCMC_Fit.R | 276 +- BayesRTMB-0.2.1/BayesRTMB/R/NUTS.R | 1080 ++++++++ BayesRTMB-0.2.1/BayesRTMB/R/RTMB_Model.R | 154 - BayesRTMB-0.2.1/BayesRTMB/R/RTMB_Model_impl_ast.R | 6 BayesRTMB-0.2.1/BayesRTMB/R/RTMB_Model_impl_sampling.R | 457 +++ BayesRTMB-0.2.1/BayesRTMB/R/VB_Fit.R | 245 + BayesRTMB-0.2.1/BayesRTMB/R/classic.R | 17 BayesRTMB-0.2.1/BayesRTMB/R/data_utils.R | 167 - BayesRTMB-0.2.1/BayesRTMB/R/derived_tape.R |only BayesRTMB-0.2.1/BayesRTMB/R/diagnose.R | 446 +++ BayesRTMB-0.2.1/BayesRTMB/R/distributions.R | 41 BayesRTMB-0.2.1/BayesRTMB/R/math_functions.R | 189 + BayesRTMB-0.2.1/BayesRTMB/R/methods_post_estimation.R | 552 ++++ BayesRTMB-0.2.1/BayesRTMB/R/model.R | 303 +- BayesRTMB-0.2.1/BayesRTMB/R/plot.R | 86 BayesRTMB-0.2.1/BayesRTMB/R/progress.R |only BayesRTMB-0.2.1/BayesRTMB/R/rhat_summary.R |only BayesRTMB-0.2.1/BayesRTMB/R/upgrade_fit.R |only BayesRTMB-0.2.1/BayesRTMB/R/waic.R | 16 BayesRTMB-0.2.1/BayesRTMB/R/wrapper_corr.R | 40 BayesRTMB-0.2.1/BayesRTMB/R/wrapper_fa.R | 77 BayesRTMB-0.2.1/BayesRTMB/R/wrapper_glmer.R | 118 BayesRTMB-0.2.1/BayesRTMB/R/wrapper_irt.R | 17 BayesRTMB-0.2.1/BayesRTMB/R/wrapper_lm_glm_lmer.R | 14 BayesRTMB-0.2.1/BayesRTMB/R/wrapper_loglinear.R | 20 BayesRTMB-0.2.1/BayesRTMB/R/wrapper_lrt.R | 22 BayesRTMB-0.2.1/BayesRTMB/R/wrapper_mdu.R | 227 + BayesRTMB-0.2.1/BayesRTMB/R/wrapper_mediation.R | 18 BayesRTMB-0.2.1/BayesRTMB/R/wrapper_mixture.R | 62 BayesRTMB-0.2.1/BayesRTMB/R/wrapper_table.R | 16 BayesRTMB-0.2.1/BayesRTMB/R/wrapper_ttest.R | 716 ++--- BayesRTMB-0.2.1/BayesRTMB/R/wrappers_prior.R | 36 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Title: Archaeological Time Series
Description: A toolkit for archaeological time series and time intervals.
This package provides a system of classes and methods to represent and
work with archaeological time series and time intervals. Dates are
represented as "rata die" and can be converted to (virtually) any
calendar defined by Reingold and Dershowitz (2018)
<doi:10.1017/9781107415058>. This packages offers a simple API that
can be used by other specialized packages.
Author: Nicolas Frerebeau [aut, cre] ,
Joe Roe [aut] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between aion versions 1.7.0 dated 2026-02-05 and 1.7.1 dated 2026-06-23
DESCRIPTION | 12 ++-- MD5 | 117 ++++++++++++++++++++--------------------- NAMESPACE | 2 NEWS.md | 4 + R/AllGenerics.R | 25 ++++++++ R/aion-package.R | 2 R/coerce.R | 14 ++++ R/show.R | 4 - README.md | 11 +-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/aion.html | 2 inst/doc/extending.html | 2 inst/doc/stratigraphy.html | 4 - inst/tinytest/test_intervals.R | 3 - inst/tinytest/test_subset.R | 2 man/GregorianCalendar-class.Rd | 4 - man/JulianCalendar-class.Rd | 4 - man/RataDie-class.Rd | 4 - man/TimeIntervals-class.Rd | 8 +- man/TimeScale-class.Rd | 4 - man/TimeSeries-class.Rd | 6 +- man/aion-package.Rd | 5 + man/arithmetic.Rd | 18 +++--- man/as.array.Rd |only man/as.data.frame.Rd | 14 +--- man/as_date.Rd | 18 +++--- man/as_decimal.Rd | 16 ++--- man/as_fixed.Rd | 16 ++--- man/as_year.Rd | 18 +++--- man/calendar.Rd | 12 ++-- man/calendar_get.Rd | 16 ++--- man/convert.Rd | 14 ++-- man/fixed.Rd | 18 +++--- man/fixed_gregorian.Rd | 20 +++---- man/fixed_julian.Rd | 20 +++---- man/flip.Rd | 14 ++-- man/format.Rd | 18 +++--- man/get_calendar.Rd | 12 ++-- man/graph_create.Rd | 6 +- man/graph_prune.Rd | 4 - man/gregorian.Rd | 14 ++-- man/image.Rd | 10 +-- man/intervals.Rd | 10 +-- man/is_calendar.Rd | 10 +-- man/julian.Rd | 12 ++-- man/labels.Rd | 10 +-- man/length.Rd | 10 +-- man/names.Rd | 10 +-- man/overlap.Rd | 6 +- man/plot.Rd | 12 ++-- man/pretty.Rd | 20 +++---- man/relations.Rd | 6 +- man/series.Rd | 8 +- man/span.Rd | 12 ++-- man/start.Rd | 12 ++-- man/subset.Rd | 10 --- man/time.Rd | 12 ++-- man/window.Rd | 12 ++-- man/year_axis.Rd | 10 +-- 60 files changed, 357 insertions(+), 342 deletions(-)
Title: Convert Digital Images to Spatially Referenced 'SpatRaster'
Objects
Description: Convert digital images to spatially referenced 'SpatRaster'
objects, as defined by the 'terra' package, using coordinates from
supported spatial input classes. Supported inputs include numeric
coordinate vectors and objects from the 'sf', 'terra' and 'stars'
packages. The main function is an S3 generic, allowing other packages
to extend support to additional spatial classes.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between rasterpic versions 0.5.0 dated 2026-05-21 and 0.5.1 dated 2026-06-23
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Title: The Hyperdirichlet Distribution, Mark 2
Description: A suite of routines for the hyperdirichlet distribution
and reified Bradley-Terry; supersedes the 'hyperdirichlet' package;
uses 'disordR' discipline <doi:10.48550/ARXIV.2210.03856>. To cite
in publications please use Hankin 2017 <doi:10.32614/rj-2017-061>,
and for Generalized Plackett-Luce likelihoods use Hankin 2024
<doi:10.18637/jss.v109.i08>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between hyper2 versions 3.2 dated 2025-11-12 and 3.2-3 dated 2026-06-23
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hyper2-3.2-3/hyper2/man/pairwise.Rd | 87 +-- hyper2-3.2-3/hyper2/man/pentathlon.Rd | 3 hyper2-3.2-3/hyper2/man/pick.Rd |only hyper2-3.2-3/hyper2/man/powerboat.Rd | 4 hyper2-3.2-3/hyper2/man/pwa.Rd | 108 ++- hyper2-3.2-3/hyper2/man/ranktable.Rd | 23 hyper2-3.2-3/hyper2/man/rhyper3.Rd | 31 - hyper2-3.2-3/hyper2/man/rp.Rd | 12 hyper2-3.2-3/hyper2/man/rrace.Rd | 2 hyper2-3.2-3/hyper2/man/rrank.Rd | 30 - hyper2-3.2-3/hyper2/man/skating.Rd | 30 - hyper2-3.2-3/hyper2/man/soling.Rd | 2 hyper2-3.2-3/hyper2/man/suppfun.Rd | 10 hyper2-3.2-3/hyper2/man/surfing.Rd | 9 hyper2-3.2-3/hyper2/man/sushi.Rd | 2 hyper2-3.2-3/hyper2/man/table_tennis.Rd | 23 hyper2-3.2-3/hyper2/man/tests.Rd | 2 hyper2-3.2-3/hyper2/man/tidy.Rd | 5 hyper2-3.2-3/hyper2/man/universities.Rd | 4 hyper2-3.2-3/hyper2/man/volleyball.Rd | 12 hyper2-3.2-3/hyper2/man/volvo.Rd | 3 hyper2-3.2-3/hyper2/man/weights.Rd |only hyper2-3.2-3/hyper2/src/RcppExports.cpp | 36 - hyper2-3.2-3/hyper2/src/hyperdirichlet2.cpp | 38 - hyper2-3.2-3/hyper2/src/hyperdirichlet3.cpp | 16 hyper2-3.2-3/hyper2/tests/testthat/test_aaa.R | 9 hyper2-3.2-3/hyper2/tests/testthat/test_hyper3.R | 7 hyper2-3.2-3/hyper2/tests/testthat/test_integrate.R |only hyper2-3.2-3/hyper2/tests/testthat/test_ranktable.R |only hyper2-3.2-3/hyper2/vignettes/hyper2.Rnw | 2 hyper2-3.2-3/hyper2/vignettes/hyper2.bib | 153 +++++ hyper2-3.2/hyper2/inst/cheering.Rmd |only hyper2-3.2/hyper2/inst/cloud9_boston_2018.txt |only hyper2-3.2/hyper2/inst/exponential_BT.Rmd |only hyper2-3.2/hyper2/inst/hankin-exponential_BT.tex |only hyper2-3.2/hyper2/inst/jss_hyper3_real.R |only hyper2-3.2/hyper2/inst/jss_hyper3_real.Rnw |only hyper2-3.2/hyper2/inst/oecd.txt |only hyper2-3.2/hyper2/inst/sushi.Rmd |only hyper2-3.2/hyper2/inst/sushi.txt |only hyper2-3.2/hyper2/man/as.ordertable.Rd |only hyper2-3.2/hyper2/man/attemptstable2supp3.Rd |only 136 files changed, 1475 insertions(+), 936 deletions(-)
Title: 'grid' Pattern Grobs
Description: Provides 'grid' grobs that fill in a user-defined area with various patterns. Includes enhanced versions of the geometric and image-based patterns originally contained in the 'ggpattern' package as well as original 'pch', 'polygon_tiling', 'regular_polygon', 'rose', 'text', 'wave', and 'weave' patterns plus support for custom user-defined patterns.
Author: Trevor L. Davis [aut, cre] ,
Mike FC [aut] ,
ggplot2 authors [ctb]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between gridpattern versions 1.3.1 dated 2025-01-16 and 1.4.2 dated 2026-06-23
gridpattern-1.3.1/gridpattern/R/mean_col.R |only gridpattern-1.3.1/gridpattern/tests/testthat/_snaps/geometry/wave-sine.svg |only gridpattern-1.3.1/gridpattern/tests/testthat/_snaps/geometry/wave-triangle.svg |only gridpattern-1.4.2/gridpattern/DESCRIPTION | 17 gridpattern-1.4.2/gridpattern/MD5 | 206 gridpattern-1.4.2/gridpattern/NAMESPACE | 5 gridpattern-1.4.2/gridpattern/NEWS.md | 109 gridpattern-1.4.2/gridpattern/R/alphaMaskGrob.R | 255 gridpattern-1.4.2/gridpattern/R/clippingPathGrob.R | 227 gridpattern-1.4.2/gridpattern/R/grid-pattern-fill.R | 51 gridpattern-1.4.2/gridpattern/R/grid-pattern.R | 337 - gridpattern-1.4.2/gridpattern/R/pattern-array-ambient.R | 186 gridpattern-1.4.2/gridpattern/R/pattern-array-image.R | 97 gridpattern-1.4.2/gridpattern/R/pattern-array-magick.R | 214 gridpattern-1.4.2/gridpattern/R/pattern-array-placeholder.R | 182 gridpattern-1.4.2/gridpattern/R/pattern-array-plasma.R | 95 gridpattern-1.4.2/gridpattern/R/pattern-both-gradient.R | 231 gridpattern-1.4.2/gridpattern/R/pattern-both-hatch.R |only gridpattern-1.4.2/gridpattern/R/pattern-both-line.R |only gridpattern-1.4.2/gridpattern/R/pattern-both-rose.R | 289 - gridpattern-1.4.2/gridpattern/R/pattern-both-text.R | 243 gridpattern-1.4.2/gridpattern/R/pattern-geometry-circle.R | 83 gridpattern-1.4.2/gridpattern/R/pattern-geometry-crosshatch.R | 187 gridpattern-1.4.2/gridpattern/R/pattern-geometry-fill.R | 44 gridpattern-1.4.2/gridpattern/R/pattern-geometry-none.R | 31 gridpattern-1.4.2/gridpattern/R/pattern-geometry-pch.R | 297 - gridpattern-1.4.2/gridpattern/R/pattern-geometry-regular_polygon.R | 594 +- gridpattern-1.4.2/gridpattern/R/pattern-geometry-stripe.R | 73 gridpattern-1.4.2/gridpattern/R/pattern-geometry-tiling.R | 2636 ++++++---- gridpattern-1.4.2/gridpattern/R/pattern-geometry-wave.R | 1207 ++++ gridpattern-1.4.2/gridpattern/R/pattern-geometry-weave.R | 216 gridpattern-1.4.2/gridpattern/R/pattern-pattern-aRtsy.R | 85 gridpattern-1.4.2/gridpattern/R/pattern_hex.R | 192 gridpattern-1.4.2/gridpattern/R/pattern_square.R | 226 gridpattern-1.4.2/gridpattern/R/pattern_weave.R | 273 - gridpattern-1.4.2/gridpattern/R/reset_image_cache.R | 2 gridpattern-1.4.2/gridpattern/R/standalone-guess_has_R4.1_features.R | 126 gridpattern-1.4.2/gridpattern/R/standalone-update_alpha.R | 87 gridpattern-1.4.2/gridpattern/R/star_scale.R | 113 gridpattern-1.4.2/gridpattern/R/utils-array.R | 233 gridpattern-1.4.2/gridpattern/R/utils-color.R |only gridpattern-1.4.2/gridpattern/R/utils-geometry.R | 175 gridpattern-1.4.2/gridpattern/R/utils-ggpattern.R | 78 gridpattern-1.4.2/gridpattern/R/utils-ggplot2.R | 60 gridpattern-1.4.2/gridpattern/R/utils-grid.R | 25 gridpattern-1.4.2/gridpattern/R/utils-magick-fill.R | 246 gridpattern-1.4.2/gridpattern/R/utils-magick-misc.R | 81 gridpattern-1.4.2/gridpattern/R/utils-magick-pattern.R | 124 gridpattern-1.4.2/gridpattern/R/utils-magick-read.R | 77 gridpattern-1.4.2/gridpattern/R/utils-misc.R | 74 gridpattern-1.4.2/gridpattern/R/utils-params.R | 233 gridpattern-1.4.2/gridpattern/R/utils-polygon_df.R | 234 gridpattern-1.4.2/gridpattern/R/utils-sf.R | 135 gridpattern-1.4.2/gridpattern/R/zzz.R | 2 gridpattern-1.4.2/gridpattern/README.md | 2 gridpattern-1.4.2/gridpattern/build/vignette.rds |binary gridpattern-1.4.2/gridpattern/inst/doc/developing-patterns.html | 227 gridpattern-1.4.2/gridpattern/inst/doc/hatching.R |only gridpattern-1.4.2/gridpattern/inst/doc/hatching.Rmd |only gridpattern-1.4.2/gridpattern/inst/doc/hatching.html |only gridpattern-1.4.2/gridpattern/inst/doc/tiling.html | 1393 ++--- gridpattern-1.4.2/gridpattern/man/figures/README-piecepackr-1.png |binary gridpattern-1.4.2/gridpattern/man/grid.pattern.Rd | 11 gridpattern-1.4.2/gridpattern/man/grid.pattern_circle.Rd | 2 gridpattern-1.4.2/gridpattern/man/grid.pattern_crosshatch.Rd | 2 gridpattern-1.4.2/gridpattern/man/grid.pattern_fill.Rd | 2 gridpattern-1.4.2/gridpattern/man/grid.pattern_hatch.Rd |only gridpattern-1.4.2/gridpattern/man/grid.pattern_line.Rd |only gridpattern-1.4.2/gridpattern/man/grid.pattern_magick.Rd | 9 gridpattern-1.4.2/gridpattern/man/grid.pattern_pch.Rd | 2 gridpattern-1.4.2/gridpattern/man/grid.pattern_placeholder.Rd | 5 gridpattern-1.4.2/gridpattern/man/grid.pattern_plasma.Rd | 2 gridpattern-1.4.2/gridpattern/man/grid.pattern_polygon_tiling.Rd | 7 gridpattern-1.4.2/gridpattern/man/grid.pattern_regular_polygon.Rd | 2 gridpattern-1.4.2/gridpattern/man/grid.pattern_rose.Rd | 2 gridpattern-1.4.2/gridpattern/man/grid.pattern_stripe.Rd | 4 gridpattern-1.4.2/gridpattern/man/grid.pattern_text.Rd | 2 gridpattern-1.4.2/gridpattern/man/grid.pattern_wave.Rd | 75 gridpattern-1.4.2/gridpattern/man/gridpattern-package.Rd | 3 gridpattern-1.4.2/gridpattern/man/mean_col.Rd | 5 gridpattern-1.4.2/gridpattern/man/mix_col.Rd |only gridpattern-1.4.2/gridpattern/man/patternFill.Rd | 14 gridpattern-1.4.2/gridpattern/man/pattern_hex.Rd | 5 gridpattern-1.4.2/gridpattern/man/pattern_square.Rd | 5 gridpattern-1.4.2/gridpattern/man/pattern_weave.Rd | 5 gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_azure.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_cendree.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_copper.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_gules.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_olive.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_or.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_proper.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_sable.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_sanguine.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_steel.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_unicode_grey.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/hatch_unicode_orange.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/line.png |only gridpattern-1.4.2/gridpattern/tests/figs/array/line_stagger.png |only gridpattern-1.4.2/gridpattern/tests/testthat/Rplots.pdf |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-dovetailed.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-embattled-grady.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-embattled.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-engrailed.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-indented-stagger.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-indented.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-invected.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-nebuly.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-potenty.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-raguly-reverse.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-raguly.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-sawtooth-reverse.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-sawtooth.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-urdy.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-wavy-stagger.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/_snaps/geometry/wave-wavy.svg |only gridpattern-1.4.2/gridpattern/tests/testthat/test_aRtsy.R | 36 gridpattern-1.4.2/gridpattern/tests/testthat/test_array.R | 459 + gridpattern-1.4.2/gridpattern/tests/testthat/test_geometry.R | 590 +- gridpattern-1.4.2/gridpattern/tests/testthat/test_hex.R | 18 gridpattern-1.4.2/gridpattern/tests/testthat/test_pch.R | 27 gridpattern-1.4.2/gridpattern/tests/testthat/test_square.R | 33 gridpattern-1.4.2/gridpattern/tests/testthat/test_tiling.R | 204 gridpattern-1.4.2/gridpattern/tests/testthat/test_utils.R | 243 gridpattern-1.4.2/gridpattern/tests/testthat/test_weave.R | 57 gridpattern-1.4.2/gridpattern/vignettes/hatching.Rmd |only 126 files changed, 9105 insertions(+), 5341 deletions(-)
Title: Download Official Spatial Data Sets of Brazil
Description: Easy access to official spatial data sets of Brazil. The package
offers a wide range of spatial data sets available at various
geographic scales and for various years with harmonized attributes,
projection and fixed topology. All functions allow for seamless
integration sf, DuckDB and Arrow.
Author: Rafael H. M. Pereira [aut, cre] ,
Rogerio Jeronimo Barbosa [aut],
Caio Nogueira Goncalves [ctb],
Cecilia do Lago [ctb],
Filipe Cavalcanti [ctb],
Arthur Bazolli [ctb],
Lucas Gelape [ctb],
Rafael Lopes [ctb],
Vinicius Oike [ctb],
Paulo Henrique Fernand [...truncated...]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between geobr versions 2.0.0 dated 2026-05-20 and 2.0.1 dated 2026-06-23
DESCRIPTION | 21 - MD5 | 89 ++--- R/read_immediate_region.R | 10 R/read_neighborhood.R | 6 R/read_polling_places.R | 6 R/utils.R | 67 ++-- inst/doc/intro_to_geobr.R | 280 +++++++++--------- inst/doc/intro_to_geobr.html | 94 ++++-- inst/extdata/br_offcoast.parquet |binary man/download_metadata2.Rd | 6 man/filter_arrw.Rd | 8 man/geobr.Rd | 2 man/lookup_muni.Rd | 3 man/read_amazon.Rd | 3 man/read_biomes.Rd | 3 man/read_census_tract.Rd | 3 man/read_conservation_units.Rd | 3 man/read_country.Rd | 3 man/read_disaster_risk_area.Rd | 3 man/read_favela.Rd | 3 man/read_health_facilities.Rd | 3 man/read_health_region.Rd | 3 man/read_immediate_region.Rd | 11 man/read_indigenous_land.Rd | 3 man/read_intermediate_region.Rd | 3 man/read_meso_region.Rd | 3 man/read_metro_area.Rd | 3 man/read_micro_region.Rd | 3 man/read_municipal_seat.Rd | 3 man/read_municipality.Rd | 3 man/read_neighborhood.Rd | 3 man/read_polling_places.Rd | 9 man/read_pop_arrangements.Rd | 3 man/read_quilombola_land.Rd | 3 man/read_region.Rd | 3 man/read_schools.Rd | 3 man/read_semiarid.Rd | 3 man/read_state.Rd | 3 man/read_statistical_grid.Rd | 3 man/read_urban_area.Rd | 3 man/read_urban_concentrations.Rd | 3 man/read_weighting_area.Rd | 3 man/roxygen/templates/date.R | 3 man/roxygen/templates/year.R | 3 tests/tests_rafa/create_br_buffer_to_remove_islands.R | 46 ++ tests/tests_rafa/pop_near_hospt.R |only 46 files changed, 412 insertions(+), 333 deletions(-)
Title: Empirical Sample Complexity Bounds
Description: Provides tools for estimating empirical sample complexity
bounds for supervised learning tasks. The package supports simulation-based
estimates of generalization curves, parametric extrapolation of empirical
sample complexity bounds, theoretical bounds based on Vapnik-Chervonenkis
dimension, and optional monotone Gaussian process extrapolation for users who
install the external 'cmdstanr' workflow. For more details, see Carter and
Choi (2024) <doi:10.31219/osf.io/evrcj>.
Author: Perry Carter [aut, cre] ,
Dahyun Choi [aut]
Maintainer: Perry Carter <pjc504@nyu.edu>
Diff between scR versions 0.4.0 dated 2024-12-23 and 0.7.0 dated 2026-06-23
scR-0.4.0/scR/R/sysdata.rda |only scR-0.4.0/scR/data |only scR-0.4.0/scR/man/br.Rd |only scR-0.4.0/scR/man/plot_accuracy.Rd |only scR-0.7.0/scR/DESCRIPTION | 47 - scR-0.7.0/scR/LICENSE | 4 scR-0.7.0/scR/MD5 | 63 + scR-0.7.0/scR/NAMESPACE | 99 +- scR-0.7.0/scR/NEWS.md |only scR-0.7.0/scR/R/data.R | 13 scR-0.7.0/scR/R/datagen.R | 72 - scR-0.7.0/scR/R/globals.R | 8 scR-0.7.0/scR/R/gp_scb.R |only scR-0.7.0/scR/R/scR-package.R | 9 scR-0.7.0/scR/R/scR.R | 968 +++++++++++++++++++----- scR-0.7.0/scR/R/simulations.R | 688 ++++++++--------- scR-0.7.0/scR/R/utils.R |only scR-0.7.0/scR/README.md | 98 +- scR-0.7.0/scR/inst |only scR-0.7.0/scR/man/acc_sim.Rd | 122 +-- scR-0.7.0/scR/man/conduct_interpolation.Rd |only scR-0.7.0/scR/man/create_scb_model.Rd |only scR-0.7.0/scR/man/create_scb_prediction.Rd |only scR-0.7.0/scR/man/estimate_accuracy.Rd | 237 ++--- scR-0.7.0/scR/man/fit_and_predict.Rd |only scR-0.7.0/scR/man/fit_gp_scb_curve.Rd |only scR-0.7.0/scR/man/gendata.Rd | 115 +- scR-0.7.0/scR/man/getpac.Rd | 78 - scR-0.7.0/scR/man/interpolate_scb.Rd |only scR-0.7.0/scR/man/interpolate_scb_gp.Rd |only scR-0.7.0/scR/man/loss.Rd | 60 - scR-0.7.0/scR/man/plot.empirical_scb_gp.Rd |only scR-0.7.0/scR/man/plot.empirical_scb_list.Rd |only scR-0.7.0/scR/man/plot.scb_data.Rd |only scR-0.7.0/scR/man/risk_bounds.Rd | 59 - scR-0.7.0/scR/man/scR-package.Rd |only scR-0.7.0/scR/man/scb.Rd | 85 -- scR-0.7.0/scR/man/simvcd.Rd | 154 +-- scR-0.7.0/scR/man/summary.empirical_scb_gp.Rd |only scR-0.7.0/scR/man/summary.empirical_scb_list.Rd |only scR-0.7.0/scR/tests |only 41 files changed, 1833 insertions(+), 1146 deletions(-)
Title: Partial Eta-Squared for Crossed, Nested, and Mixed Linear Mixed
Models
Description: Computes partial eta-squared effect sizes for fixed effects in
linear mixed models fitted with the 'lme4' package. Supports crossed,
nested, and mixed (crossed-and-nested) random effects structures with any
number of grouping factors. Mixed designs handle cases where grouping
factors are simultaneously crossed with some variables and nested within
others (e.g., photos nested within models, but both crossed with
participants). Factor predictors are supported directly, and a single
factor-level (omnibus) effect size can be obtained for a multi-level factor
or multi-df interaction. Random slope variances are translated to the
outcome scale using a variance decomposition approach, correctly accounting
for predictor scaling and interaction terms. Both general and operative
effect sizes are provided, with optional parametric bootstrap confidence
intervals. For correlated predictors, per-predictor effect sizes use unique
(semipartial) variance by default. Methods are based on Correll, Melling [...truncated...]
Author: Brandon Cohen [aut, cre] ,
Joshua Correll [aut, ths]
Maintainer: Brandon Cohen <brandon.cohen-1@colorado.edu>
Diff between pecanr versions 0.2.0 dated 2026-04-11 and 0.3.0 dated 2026-06-23
DESCRIPTION | 22 - MD5 | 21 - NAMESPACE | 2 NEWS.md | 92 ++++++ R/eta2p.R | 660 ++++++++++++++++++++++++++++++++++++++++++++------ README.md | 98 +++++++ build/partial.rdb |binary inst/WORDLIST | 6 man/batch_eta2p.Rd | 22 + man/eta2p.Rd | 188 +++++++++++++- man/eta2p_omnibus.Rd |only man/pecanr-package.Rd | 3 12 files changed, 998 insertions(+), 116 deletions(-)
Title: Visualize Heterogeneity-Robust Event Studies for Non-Absorbing
Treatments
Description: Runs several heterogeneity-robust difference-in-differences (DID) event-study estimators
for non-absorbing (i.e., treatment can switch on and off over time, allowing treatment reversal)
binary treatments through their respective packages,
harmonizes their output onto a common time axis and tidy data structure, and overlays them in a single
'ggplot2' panel for visual comparison.
Supported estimators include those provided by 'DIDmultiplegtDYN', 'PanelMatch', and 'fect', with an
optional naive two-way fixed-effects reference series via 'fixest'. The underlying methods are respectively described in
Clement de Chaisemartin and Xavier D'Haultfoeuille. "Difference-in-Differences Estimators of Intertemporal Treatment Effects."
The Review of Economics and Statistics (2026) <doi:10.1162/rest_a_01414>,
Kosuke Imai, In Song Kim, and Erik H. Wang. "Matching methods for causal inference with time‐series cross‐sectional data."
American Journal of Political Science 67.3 (2023) <doi:10.1111/a [...truncated...]
Author: Takuma Iwasaki [aut, cre]
Maintainer: Takuma Iwasaki <iwasakit@stanford.edu>
Diff between nonabsdid versions 0.3.2 dated 2026-06-18 and 0.4.1 dated 2026-06-23
DESCRIPTION | 17 - MD5 | 78 +++++-- NAMESPACE | 13 + NEWS.md | 12 - R/as_nabs_event_study.R | 3 R/effect_cells.R |only R/effect_cells_dcdh.R |only R/effect_cells_fect.R |only R/nabs_dta.R |only R/nabs_effect_cells.R |only R/nabs_event_study.R | 262 ++++++++++++++++++++++---- R/nabs_event_study_simple.R | 145 +++++++++++--- R/naive_twfe.R | 67 ++++-- R/nonabsdid-package.R | 5 R/plot_effect_matrix.R |only R/preflight.R |only R/stata_aliases.R |only R/tidy_panelmatch.R | 4 README.md | 134 +++++++++++-- build/vignette.rds |binary inst/doc/cohort-matrix.R |only inst/doc/cohort-matrix.Rmd |only inst/doc/cohort-matrix.html |only inst/doc/nonabsdid-for-stata-users.R |only inst/doc/nonabsdid-for-stata-users.Rmd |only inst/doc/nonabsdid-for-stata-users.html |only man/aggregate_effects.Rd |only man/as_nabs_effect_cells.Rd |only man/figures/README_cohort_matrix.png |only man/figures/README_cohort_matrix_combined.png |only man/figures/README_cohort_matrix_dcdh.png |only man/nabs_effect_cells.Rd |only man/nabs_event_study.Rd | 54 +++++ man/nabs_event_study_simple.Rd | 46 +++- man/nabs_read_dta.Rd |only man/nabs_write_dta.Rd |only man/naive_twfe.Rd | 5 man/nonabsdid-package.Rd | 1 man/plot_effect_matrix.Rd |only tests/testthat/test-dcdh.R | 4 tests/testthat/test-dta.R |only tests/testthat/test-effect-cells.R |only tests/testthat/test-fect.R | 20 - tests/testthat/test-fixest-tidy.R |only tests/testthat/test-internals.R |only tests/testthat/test-knobs.R |only tests/testthat/test-nabs-event-plot.R | 13 - tests/testthat/test-naive-twfe.R | 10 tests/testthat/test-panelmatch.R | 10 tests/testthat/test-plot-styles.R |only tests/testthat/test-preflight.R |only tests/testthat/test-print-coerce.R |only tests/testthat/test-schema.R | 4 tests/testthat/test-simple.R | 17 - tests/testthat/test-stata-aliases.R |only vignettes/cohort-matrix.Rmd |only vignettes/nonabsdid-for-stata-users.Rmd |only 57 files changed, 726 insertions(+), 198 deletions(-)
Title: Sourcing Archaeological Materials by Chemical Composition
Description: Exploration and analysis of compositional data in the
framework of Aitchison (1986, ISBN: 978-94-010-8324-9). This package
provides tools for chemical fingerprinting and source tracking of
ancient materials.
Author: Nicolas Frerebeau [aut, cre] ,
Anne Philippe [aut] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between nexus versions 0.6.0 dated 2025-06-02 and 0.6.1 dated 2026-06-23
nexus-0.6.0/nexus/vignettes/uml.R |only nexus-0.6.1/nexus/DESCRIPTION | 10 nexus-0.6.1/nexus/MD5 | 190 ++++++++-------- nexus-0.6.1/nexus/NAMESPACE | 21 - nexus-0.6.1/nexus/NEWS.md | 4 nexus-0.6.1/nexus/R/AllGenerics.R | 225 ++++++++++---------- nexus-0.6.1/nexus/R/bind.R | 2 nexus-0.6.1/nexus/R/coerce.R | 30 ++ nexus-0.6.1/nexus/R/dist.R | 2 nexus-0.6.1/nexus/R/nexus-package.R | 21 - nexus-0.6.1/nexus/R/scale.R | 2 nexus-0.6.1/nexus/R/subset.R | 23 -- nexus-0.6.1/nexus/README.md | 68 +++--- nexus-0.6.1/nexus/build/partial.rdb |binary nexus-0.6.1/nexus/build/vignette.rds |binary nexus-0.6.1/nexus/inst/CITATION | 2 nexus-0.6.1/nexus/inst/doc/groups.html | 8 nexus-0.6.1/nexus/inst/doc/nexus.html | 8 nexus-0.6.1/nexus/inst/examples/ex-coerce.R | 2 nexus-0.6.1/nexus/inst/po/fr/LC_MESSAGES/R-nexus.mo |binary nexus-0.6.1/nexus/inst/tinytest/test_mutators.R | 2 nexus-0.6.1/nexus/inst/tinytest/test_outliers.R | 10 nexus-0.6.1/nexus/inst/tinytest/test_plot.R | 72 +++--- nexus-0.6.1/nexus/man/CompositionMatrix-class.Rd | 4 nexus-0.6.1/nexus/man/GroupedComposition-class.Rd | 6 nexus-0.6.1/nexus/man/GroupedLogRatio-class.Rd | 6 nexus-0.6.1/nexus/man/LogRatio-class.Rd | 2 nexus-0.6.1/nexus/man/NumericMatrix-class.Rd | 2 nexus-0.6.1/nexus/man/OutlierIndex-class.Rd | 2 nexus-0.6.1/nexus/man/ReferenceGroups-class.Rd | 2 nexus-0.6.1/nexus/man/aggregate.Rd | 28 +- nexus-0.6.1/nexus/man/arctic.Rd | 2 nexus-0.6.1/nexus/man/arithmetic.Rd | 16 - nexus-0.6.1/nexus/man/as.data.frame.Rd | 12 - nexus-0.6.1/nexus/man/as.matrix.Rd |only nexus-0.6.1/nexus/man/as_amounts.Rd | 8 nexus-0.6.1/nexus/man/as_composition.Rd | 8 nexus-0.6.1/nexus/man/as_graph.Rd | 14 - nexus-0.6.1/nexus/man/barplot.Rd | 14 - nexus-0.6.1/nexus/man/bind.Rd | 8 nexus-0.6.1/nexus/man/boxite.Rd | 2 nexus-0.6.1/nexus/man/boxplot.Rd | 14 - nexus-0.6.1/nexus/man/chemistry.Rd | 2 nexus-0.6.1/nexus/man/closure.Rd | 8 nexus-0.6.1/nexus/man/condense.Rd | 30 +- nexus-0.6.1/nexus/man/covariance.Rd | 30 +- nexus-0.6.1/nexus/man/coxite.Rd | 2 nexus-0.6.1/nexus/man/describe.Rd | 2 nexus-0.6.1/nexus/man/detect_outlier.Rd | 8 nexus-0.6.1/nexus/man/dist.Rd | 28 +- nexus-0.6.1/nexus/man/figures/README-lra-2.png |binary nexus-0.6.1/nexus/man/group.Rd | 12 - nexus-0.6.1/nexus/man/group_names.Rd | 10 nexus-0.6.1/nexus/man/group_split.Rd | 14 - nexus-0.6.1/nexus/man/group_subset.Rd | 14 - nexus-0.6.1/nexus/man/hist.Rd | 14 - nexus-0.6.1/nexus/man/hongite.Rd | 2 nexus-0.6.1/nexus/man/is_assigned.Rd | 10 nexus-0.6.1/nexus/man/kongite.Rd | 2 nexus-0.6.1/nexus/man/labels.Rd | 7 nexus-0.6.1/nexus/man/lava.Rd | 2 nexus-0.6.1/nexus/man/mahalanobis.Rd | 28 +- nexus-0.6.1/nexus/man/margin.Rd | 30 +- nexus-0.6.1/nexus/man/mean.Rd | 28 +- nexus-0.6.1/nexus/man/missing.Rd | 8 nexus-0.6.1/nexus/man/nexus-package.Rd | 7 nexus-0.6.1/nexus/man/pairs.Rd | 14 - nexus-0.6.1/nexus/man/pca.Rd | 2 nexus-0.6.1/nexus/man/perturbation.Rd | 10 nexus-0.6.1/nexus/man/pip.Rd | 28 +- nexus-0.6.1/nexus/man/plot.Rd | 14 - nexus-0.6.1/nexus/man/plot_outlier.Rd | 6 nexus-0.6.1/nexus/man/powering.Rd | 10 nexus-0.6.1/nexus/man/predator.Rd | 2 nexus-0.6.1/nexus/man/quantile.Rd | 28 +- nexus-0.6.1/nexus/man/reexports.Rd | 4 nexus-0.6.1/nexus/man/replace_NA.Rd | 8 nexus-0.6.1/nexus/man/replace_zero.Rd | 8 nexus-0.6.1/nexus/man/scalar.Rd | 10 nexus-0.6.1/nexus/man/scale.Rd | 30 +- nexus-0.6.1/nexus/man/slides.Rd | 2 nexus-0.6.1/nexus/man/subset.Rd | 2 nexus-0.6.1/nexus/man/t.Rd | 36 +-- nexus-0.6.1/nexus/man/totals.Rd | 11 nexus-0.6.1/nexus/man/transform_alr.Rd | 16 - nexus-0.6.1/nexus/man/transform_clr.Rd | 16 - nexus-0.6.1/nexus/man/transform_ilr.Rd | 16 - nexus-0.6.1/nexus/man/transform_inverse.Rd | 18 - nexus-0.6.1/nexus/man/transform_lr.Rd | 16 - nexus-0.6.1/nexus/man/transform_plr.Rd | 16 - nexus-0.6.1/nexus/man/univariate_ilr.Rd | 2 nexus-0.6.1/nexus/man/variance.Rd | 28 +- nexus-0.6.1/nexus/man/variance_total.Rd | 28 +- nexus-0.6.1/nexus/man/variation.Rd | 28 +- nexus-0.6.1/nexus/man/weights.Rd | 7 nexus-0.6.1/nexus/po/R-fr.po | 4 nexus-0.6.1/nexus/tests/tinytest.R | 6 97 files changed, 782 insertions(+), 794 deletions(-)
Title: Coherent Forecast Combination for Linearly Constrained Multiple
Time Series
Description: Methods and tools designed to improve the forecast accuracy for a linearly
constrained multiple time series, while fulfilling the linear/aggregation relationships
linking the components (Girolimetto and Di Fonzo, 2024 <doi:10.48550/arXiv.2412.03429>).
'FoCo2' offers multi-task forecast combination and reconciliation
approaches leveraging input from multiple forecasting models or experts and ensuring
that the resulting forecasts satisfy specified linear constraints. In addition, linear
inequality constraints (e.g., non-negativity of the forecasts) can be imposed, if needed.
Author: Daniele Girolimetto [aut, cre] ,
Tommaso Di Fonzo [aut]
Maintainer: Daniele Girolimetto <daniele.girolimetto@unipd.it>
Diff between FoCo2 versions 0.1.3 dated 2026-03-13 and 0.1.4 dated 2026-06-23
DESCRIPTION | 6 - MD5 | 12 +-- NEWS.md | 7 + R/cscov.R | 212 ++++++++++++++++++++++++++++++++++-------------------------- R/optimal.R | 37 +++++++--- R/projmat.R | 128 ++++++++++++++++++++++++------------ README.md | 4 - 7 files changed, 254 insertions(+), 152 deletions(-)
Title: Access Data from Brazilian Central Bank: IFdata, Active
Institutions, Balance Sheets and Normative Acts
Description: Provides functions to query, retrieve, and tidy economic and
financial data from Brazilian Central Bank web services for use in R
analyses and workflows. Active institutions information, balance sheets and normative acts.
Author: Ricardo Theodoro [aut, cre]
Maintainer: Ricardo Theodoro <rtheodoro@usp.br>
Diff between bacenR versions 0.3.1 dated 2026-03-08 and 0.4.3 dated 2026-06-23
DESCRIPTION | 10 +- MD5 | 56 +++++++------- NAMESPACE | 4 + NEWS.md | 12 ++- R/get_balance_sheets.R | 8 -- R/get_ifdata_registry.R | 2 R/get_ifdata_reports.R | 46 ++++++----- R/get_institutions.R | 15 ++- R/get_normative_data.R | 175 ++++++++++++++++++++++++++++++--------------- R/get_normative_txt.R | 3 R/tidy_balance_sheets.R | 4 - R/tidy_ifdata_reports.R |only R/tidy_institutions.R | 7 - README.md | 21 ++++- build/vignette.rds |binary inst/CITATION | 3 inst/doc/bacenR.Rmd | 9 ++ inst/doc/bacenR.html | 17 +++- man/bacenR-package.Rd | 7 + man/figures/hexlogo.png |only man/figures/logo.png |only man/get_balance_sheets.Rd | 6 - man/get_ifdata_registry.Rd | 2 man/get_ifdata_reports.Rd | 46 ++++++----- man/get_institutions.Rd | 13 ++- man/get_normative_data.Rd | 7 + man/get_normative_txt.Rd | 3 man/tidy_balance_sheets.Rd | 4 - man/tidy_ifdata_reports.Rd |only man/tidy_institutions.Rd | 6 - vignettes/bacenR.Rmd | 9 ++ 31 files changed, 314 insertions(+), 181 deletions(-)
Title: Many Ways to Measure and Classify Membership for Networks,
Nodes, and Ties
Description: Many tools for calculating network, node, or tie
marks, measures, motifs and memberships of many different types of networks.
Marks identify structural positions, measures quantify network properties,
memberships classify nodes into groups, and motifs tabulate substructure participation.
All functions operate with all classes of network data covered in 'manynet',
and on directed, undirected, multiplex, multimodal, signed, and other networks.
Author: James Hollway [cre, aut, ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between netrics versions 0.2.1 dated 2026-04-06 and 0.3.1 dated 2026-06-23
netrics-0.2.1/netrics/man/reexports.Rd |only netrics-0.3.1/netrics/DESCRIPTION | 11 netrics-0.3.1/netrics/MD5 | 176 +-- netrics-0.3.1/netrics/NAMESPACE | 6 netrics-0.3.1/netrics/NEWS.md | 47 netrics-0.3.1/netrics/R/class_metrics.R | 4 netrics-0.3.1/netrics/R/mark_nodes.R | 55 netrics-0.3.1/netrics/R/mark_ties.R | 16 netrics-0.3.1/netrics/R/measure_centrality_between.R | 2 netrics-0.3.1/netrics/R/measure_centrality_closeness.R | 2 netrics-0.3.1/netrics/R/measure_diffusion.R | 20 netrics-0.3.1/netrics/R/measure_heterogeneity.R | 13 netrics-0.3.1/netrics/R/member_components.R | 2 netrics-0.3.1/netrics/R/member_core.R | 2 netrics-0.3.1/netrics/R/member_equivalence.R | 37 netrics-0.3.1/netrics/R/motif_brokerage.R | 2 netrics-0.3.1/netrics/R/motif_census.R | 2 netrics-0.3.1/netrics/R/zzz.R | 6 netrics-0.3.1/netrics/build/partial.rdb |binary netrics-0.3.1/netrics/inst/netrics.png |only netrics-0.3.1/netrics/inst/tutorials/tutorial3/centrality.Rmd | 82 - netrics-0.3.1/netrics/inst/tutorials/tutorial3/centrality.html | 567 +++++++--- netrics-0.3.1/netrics/inst/tutorials/tutorial4/community.Rmd | 90 - netrics-0.3.1/netrics/inst/tutorials/tutorial4/community.html | 246 ++-- netrics-0.3.1/netrics/inst/tutorials/tutorial5/position.Rmd | 76 - netrics-0.3.1/netrics/inst/tutorials/tutorial5/position.html | 391 +++--- netrics-0.3.1/netrics/inst/tutorials/tutorial6/topology.Rmd | 43 netrics-0.3.1/netrics/inst/tutorials/tutorial6/topology.html | 524 ++++----- netrics-0.3.1/netrics/man/figures/logo.png |binary netrics-0.3.1/netrics/man/mark_core.Rd | 10 netrics-0.3.1/netrics/man/mark_degree.Rd | 8 netrics-0.3.1/netrics/man/mark_diff.Rd | 8 netrics-0.3.1/netrics/man/mark_dyads.Rd | 6 netrics-0.3.1/netrics/man/mark_nodes.Rd | 6 netrics-0.3.1/netrics/man/mark_select_node.Rd | 8 netrics-0.3.1/netrics/man/mark_select_tie.Rd | 8 netrics-0.3.1/netrics/man/mark_ties.Rd | 8 netrics-0.3.1/netrics/man/mark_triangles.Rd | 20 netrics-0.3.1/netrics/man/measure_assort_net.Rd | 10 netrics-0.3.1/netrics/man/measure_assort_node.Rd | 12 netrics-0.3.1/netrics/man/measure_breadth.Rd | 6 netrics-0.3.1/netrics/man/measure_broker_node.Rd | 8 netrics-0.3.1/netrics/man/measure_broker_tie.Rd | 8 netrics-0.3.1/netrics/man/measure_brokerage.Rd | 8 netrics-0.3.1/netrics/man/measure_central_between.Rd | 12 netrics-0.3.1/netrics/man/measure_central_close.Rd | 12 netrics-0.3.1/netrics/man/measure_central_degree.Rd | 12 netrics-0.3.1/netrics/man/measure_central_eigen.Rd | 12 netrics-0.3.1/netrics/man/measure_centralisation_between.Rd | 10 netrics-0.3.1/netrics/man/measure_centralisation_close.Rd | 10 netrics-0.3.1/netrics/man/measure_centralisation_degree.Rd | 10 netrics-0.3.1/netrics/man/measure_centralisation_eigen.Rd | 10 netrics-0.3.1/netrics/man/measure_centralities_between.Rd | 14 netrics-0.3.1/netrics/man/measure_centralities_close.Rd | 14 netrics-0.3.1/netrics/man/measure_centralities_degree.Rd | 12 netrics-0.3.1/netrics/man/measure_centralities_eigen.Rd | 12 netrics-0.3.1/netrics/man/measure_closure.Rd | 4 netrics-0.3.1/netrics/man/measure_closure_node.Rd | 6 netrics-0.3.1/netrics/man/measure_cohesion.Rd | 6 netrics-0.3.1/netrics/man/measure_core.Rd | 8 netrics-0.3.1/netrics/man/measure_diffusion_infection.Rd | 4 netrics-0.3.1/netrics/man/measure_diffusion_net.Rd | 4 netrics-0.3.1/netrics/man/measure_diffusion_node.Rd | 8 netrics-0.3.1/netrics/man/measure_diverse_net.Rd | 6 netrics-0.3.1/netrics/man/measure_diverse_node.Rd | 8 netrics-0.3.1/netrics/man/measure_features.Rd | 4 netrics-0.3.1/netrics/man/measure_fragmentation.Rd | 6 netrics-0.3.1/netrics/man/measure_hierarchy.Rd | 6 netrics-0.3.1/netrics/man/measure_periods.Rd | 6 netrics-0.3.1/netrics/man/member_brokerage.Rd | 8 netrics-0.3.1/netrics/man/member_cliques.Rd | 6 netrics-0.3.1/netrics/man/member_community.Rd | 8 netrics-0.3.1/netrics/man/member_community_hier.Rd | 8 netrics-0.3.1/netrics/man/member_community_non.Rd | 8 netrics-0.3.1/netrics/man/member_components.Rd | 8 netrics-0.3.1/netrics/man/member_core.Rd | 8 netrics-0.3.1/netrics/man/member_diffusion.Rd | 8 netrics-0.3.1/netrics/man/member_equivalence.Rd | 6 netrics-0.3.1/netrics/man/method_cluster.Rd | 2 netrics-0.3.1/netrics/man/method_kselect.Rd | 2 netrics-0.3.1/netrics/man/motif_brokerage_net.Rd | 6 netrics-0.3.1/netrics/man/motif_brokerage_node.Rd | 8 netrics-0.3.1/netrics/man/motif_exposure.Rd | 8 netrics-0.3.1/netrics/man/motif_hazard.Rd | 6 netrics-0.3.1/netrics/man/motif_hierarchy.Rd | 6 netrics-0.3.1/netrics/man/motif_net.Rd | 6 netrics-0.3.1/netrics/man/motif_node.Rd | 8 netrics-0.3.1/netrics/man/motif_path.Rd | 6 netrics-0.3.1/netrics/man/motif_periods.Rd | 6 netrics-0.3.1/netrics/tests/testthat/test-measure_nodes.R | 7 90 files changed, 1593 insertions(+), 1318 deletions(-)
Title: Treatment of Zeros, Left-Censored and Missing Values in
Compositional Data Sets
Description: Principled methods for the imputation of zeros, left-censored and missing data in
compositional data sets (Palarea-Albaladejo and Martin-Fernandez (2015) <doi:10.1016/j.chemolab.2015.02.019>).
Author: Javier Palarea-Albaladejo [cre, aut] ,
Josep Antoni Martin-Fernandez [aut]
Maintainer: Javier Palarea-Albaladejo <javier.palarea@udg.edu>
Diff between zCompositions versions 1.6.1 dated 2026-04-18 and 1.6.2 dated 2026-06-23
DESCRIPTION | 10 - MD5 | 44 ++--- NAMESPACE | 10 - NEWS | 6 R/cmultRepl.R | 38 ++-- R/lrDA.R | 162 +++++++++++++++----- R/lrEM.R | 173 ++++++++++++++++------ R/lrEMplus.R | 111 +++++++++++--- R/lrSVD.R | 262 +++++++++++++++++++++++++++------ R/lrSVDplus.R | 277 ++++++++++++++++++++++++++--------- R/multKM.R | 212 +++++++++++++++++++-------- R/multLN.R | 437 +++++++++++++++++++++++++++----------------------------- R/multRepl.R | 197 ++++++++++++++++++++----- R/multReplus.R | 216 +++++++++++++++++++++++---- R/perLog.R | 137 ++++++++++++++++- R/splineKM.R | 135 ++++++++++++----- R/zPatterns.R | 109 ++++++++++++- man/lrDA.Rd | 2 man/lrEM.Rd | 2 man/lrSVD.Rd | 2 man/multKM.Rd | 2 man/multLN.Rd | 2 man/multRepl.Rd | 2 23 files changed, 1860 insertions(+), 688 deletions(-)
Title: Construct Mixed Type Data Structures with Vectors of Vectors
Description: Mixed type vectors are useful for combining semantically similar
classes. Some examples of semantically related classes include time across
different granularities (e.g. daily, monthly, annual) and probability
distributions (e.g. Normal, Uniform, Poisson). These groups of vector types
typically share common statistical operations which vary in results with the
attributes of each vector. The 'vecvec' data structure facilitates efficient
storage and computation across multiple vectors within the same object.
Author: Mitchell O'Hara-Wild [aut, cre]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between vecvec versions 1.1.0 dated 2026-06-04 and 1.2.0 dated 2026-06-23
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- NEWS.md | 14 ++++++++++---- R/hook.R | 22 +++++++++++++++++----- R/vecvec.R | 10 ++++++---- man/vecvec_register.Rd | 19 ++++++++++++++++++- tests/testthat/_snaps |only tests/testthat/test-format.R |only 8 files changed, 62 insertions(+), 23 deletions(-)
Title: Markdown-Based Programmable Surveys Using 'Quarto' and 'shiny'
Description: Generate programmable surveys using markdown and R code chunks. Surveys
are composed of two files: a survey.qmd 'Quarto' file defining the
survey content (pages, questions, etc), and an app.R file defining a
'shiny' app with global settings (libraries, database configuration,
etc.) and server configuration options (e.g., conditional skipping /
display, etc.). Survey data collected from respondents is stored in a
'PostgreSQL' database. Features include controls for conditional skip
logic (skip to a page based on an answer to a question), conditional
display logic (display a question based on an answer to a question), a
customizable progress bar, and a wide variety of question types,
including multiple choice (single choice and multiple choices),
select, text, numeric, multiple choice buttons, text area, and dates.
Because the surveys render into a 'shiny' app, designers can also
leverage the reactive capabilities of 'shiny' to create dynamic and
interactive surveys.
Author: John Paul Helveston [aut, cre, cph] ,
Pingfan Hu [aut, cph] ,
Bogdan Bunea [aut, cph] ,
Stefan Munnes [ctb],
Reed Benkendorf [ctb] ,
Umair Durrani [ctb],
Dylan Pieper [ctb]
Maintainer: John Paul Helveston <john.helveston@gmail.com>
Diff between surveydown versions 1.0.1 dated 2025-12-19 and 1.3.0 dated 2026-06-23
surveydown-1.0.1/surveydown/inst/template |only surveydown-1.3.0/surveydown/DESCRIPTION | 16 surveydown-1.3.0/surveydown/MD5 | 56 surveydown-1.3.0/surveydown/NAMESPACE | 2 surveydown-1.3.0/surveydown/NEWS.md | 68 surveydown-1.3.0/surveydown/R/config.R | 859 ++++-- surveydown-1.3.0/surveydown/R/db.R | 433 +++ surveydown-1.3.0/surveydown/R/messages.R | 72 surveydown-1.3.0/surveydown/R/question_types.R |only surveydown-1.3.0/surveydown/R/server.R | 1713 ++++++------- surveydown-1.3.0/surveydown/R/ui.R | 910 ++---- surveydown-1.3.0/surveydown/R/util.R | 303 +- surveydown-1.3.0/surveydown/README.md | 2 surveydown-1.3.0/surveydown/inst/css/surveydown.css | 284 ++ surveydown-1.3.0/surveydown/inst/js/cookies.js | 37 surveydown-1.3.0/surveydown/inst/js/interaction.js | 110 surveydown-1.3.0/surveydown/inst/js/option_attr.js |only surveydown-1.3.0/surveydown/inst/lua/include-resources.lua | 1 surveydown-1.3.0/surveydown/man/sd_close.Rd | 19 surveydown-1.3.0/surveydown/man/sd_create_messages.Rd | 2 surveydown-1.3.0/surveydown/man/sd_create_survey.Rd | 1 surveydown-1.3.0/surveydown/man/sd_db_config.Rd | 11 surveydown-1.3.0/surveydown/man/sd_db_connect.Rd | 43 surveydown-1.3.0/surveydown/man/sd_question.Rd | 70 surveydown-1.3.0/surveydown/man/sd_server.Rd | 153 - surveydown-1.3.0/surveydown/man/sd_store_value.Rd | 4 surveydown-1.3.0/surveydown/man/sd_value.Rd |only surveydown-1.3.0/surveydown/man/sd_values.Rd |only surveydown-1.3.0/surveydown/tests/testthat |only 29 files changed, 3200 insertions(+), 1969 deletions(-)
Title: S-Type Estimators
Description: Implements the S-type estimators, novel robust estimators for general linear regression models, addressing challenges such as outlier contamination and leverage points. This package introduces robust regression techniques to provide a robust alternative to classical methods and includes diagnostic tools for assessing model fit and performance. The methodology is based on the study, "Comparison of the Robust Methods in the General Linear Regression Model" by Sazak and Mutlu (2023). This package is designed for statisticians and applied researchers seeking advanced tools for robust regression analysis.
Author: Hakan Savas Sazak [aut] ,
Filiz Karadag [cre] ,
Olgun Aydin [aut]
Maintainer: Filiz Karadag <filiz.karadag@ege.edu.tr>
Diff between Stype.est versions 0.1.0 dated 2025-08-29 and 0.2.0 dated 2026-06-23
DESCRIPTION | 7 - MD5 | 9 - NAMESPACE | 2 NEWS.md |only R/regstype.R | 289 +++++++++++++++++++------------------------------------- man/regstype.Rd | 23 +--- 6 files changed, 117 insertions(+), 213 deletions(-)
Title: Translate CSS Selectors to XPath Expressions
Description: Translates a CSS selector into an equivalent XPath
expression. This allows us to use CSS selectors when working with
the XML package as it can only evaluate XPath expressions. Also
provided are convenience functions useful for using CSS selectors on
XML nodes. This package is a port of the Python package 'cssselect'
(<https://cssselect.readthedocs.io/>).
Author: Simon Potter [aut, trl, cre],
Simon Sapin [aut],
Ian Bicking [aut]
Maintainer: Simon Potter <simon@sjp.co.nz>
Diff between selectr versions 0.5-1 dated 2025-12-17 and 0.6-0 dated 2026-06-23
.Rinstignore | 2 DESCRIPTION | 11 LICENCE | 6 MD5 | 74 NAMESPACE | 58 R/main.R | 103 - R/parser.R | 628 ++++-- R/xpath.R | 2536 +++++++++++++++------------- README.md | 152 - inst/CITATION | 18 inst/NEWS.Rd | 994 ++++++---- man/css_to_xpath.Rd | 202 +- man/querySelectorAll.Rd | 311 +-- tests/testthat/test-adjacent-sibling.R | 322 +-- tests/testthat/test-has.R | 665 ++++--- tests/testthat/test-main.R | 188 +- tests/testthat/test-method-registration.R | 31 tests/testthat/test-namespaces.R |only tests/testthat/test-nth-child-of.R | 240 +- tests/testthat/test-nth-child.R | 1442 +++++++-------- tests/testthat/test-parse-errors.R | 244 +- tests/testthat/test-parser.R | 404 ++-- tests/testthat/test-pseudo.R | 304 ++- tests/testthat/test-querySelector-XML.R | 251 +- tests/testthat/test-querySelector-default.R | 16 tests/testthat/test-querySelector-xml2.R | 233 +- tests/testthat/test-quoting.R | 55 tests/testthat/test-scope.R |only tests/testthat/test-select-XML.R | 347 +-- tests/testthat/test-select-xml2.R | 474 +++-- tests/testthat/test-series.R | 110 - tests/testthat/test-shakespeare-XML.R | 532 ++--- tests/testthat/test-shakespeare-xml2.R | 534 ++--- tests/testthat/test-specificity.R | 191 +- tests/testthat/test-tokenizer.R | 112 - tests/testthat/test-translation.R | 402 ++-- tests/testthat/test-where.R | 588 +++--- tests/testthat/test-xmllang-XML.R | 92 - tests/testthat/test-xmllang-xml2.R | 92 - tests/testthat/test-xpath.R | 427 +++- 40 files changed, 7703 insertions(+), 5688 deletions(-)
Title: Radiocarbon Calibration Curves
Description: The IntCal20 radiocarbon calibration curves (Reimer et al. 2020 <doi:10.1017/RDC.2020.68>) are provided as a data package, together with previous IntCal curves (IntCal13, IntCal09, IntCal04, IntCal98), other curves (e.g., NOTCal04 [van der Plicht et al. 2004], Arnold & Libby 1951, Stuiver & Suess 1966, Pearson & Stuiver 1986) and postbomb curves. Also provided are functions to copy the curves into memory, and to read, query and plot the data underlying the IntCal20 curves.
Author: Maarten Blaauw [aut, cre] ,
Christopher Bronk Ramsey [ctb]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rintcal versions 1.4.0 dated 2026-03-13 and 1.4.1 dated 2026-06-23
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/data.R | 32 ++++++++++++++++++++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/rintcal.html | 23 +++++++++++------------ man/rintcal-package.Rd | 5 +++++ 8 files changed, 55 insertions(+), 31 deletions(-)
Title: Miscellaneous Functions for Processing and Sample Selection of
Spectroscopic Data
Description: Functions to preprocess spectroscopic data
and conduct (representative) sample selection/calibration sampling.
Author: Antoine Stevens [aut] ,
Leonardo Ramirez-Lopez [aut, cre]
Maintainer: Leonardo Ramirez-Lopez <ramirez.lopez.leo@gmail.com>
Diff between prospectr versions 0.2.9 dated 2026-05-31 and 0.2.10 dated 2026-06-23
DESCRIPTION | 10 MD5 | 34 NEWS.md | 11 R/detrend.R | 26 R/new |only README.md | 6 build/stage23.rdb |binary inst/doc/aa-intro.html | 11 inst/doc/aa-intro.qmd | 2 inst/doc/bb-pre-processing-spectral-data.R | 1 inst/doc/bb-pre-processing-spectral-data.html | 475 ++++------ inst/doc/bb-pre-processing-spectral-data.qmd | 2 inst/doc/cc-selecting-representative-calibration-samples.html | 4 man/detrend.Rd | 12 man/prospectr-package.Rd | 2 vignettes/aa-intro.qmd | 2 vignettes/bb-pre-processing-spectral-data.qmd | 2 17 files changed, 323 insertions(+), 277 deletions(-)
Title: Perform HTTP Requests and Process the Responses
Description: Tools for creating and modifying HTTP requests, then
performing them and processing the results. 'httr2' is a modern
re-imagining of 'httr' that uses a pipe-based interface and solves
more of the problems that API wrapping packages face.
Author: Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd],
Maximilian Girlich [ctb]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between httr2 versions 1.2.2 dated 2025-12-08 and 1.2.3 dated 2026-06-23
DESCRIPTION | 17 MD5 | 173 ++++--- NAMESPACE | 3 NEWS.md | 23 + R/curl.R | 3 R/httr2-translate.R |only R/jwt.R | 27 + R/last.R | 9 R/oauth-client.R | 68 ++- R/oauth-flow-auth-code.R | 13 R/oauth-flow-device.R | 11 R/oauth-flow-jwt.R | 22 - R/oauth-server-metadata.R |only R/oauth.R | 6 R/parse.R | 1 R/pooled-request.R | 1 R/req-auth-aws.R | 35 + R/req-body.R | 2 R/req-cache.R | 6 R/req-perform-connection.R | 14 R/req-perform.R | 11 R/req-progress.R | 2 R/req-throttle.R | 110 ++++- R/req-verbose.R | 3 R/resp-stream-aws.R | 92 ++-- R/resp-stream-lines.R |only R/resp-stream-sse.R |only R/resp-stream.R | 550 ++++++++----------------- R/test.R | 3 R/url.R | 4 README.md | 13 build/vignette.rds |binary inst/doc/httr2.html | 38 - man/StreamingBody.Rd | 189 ++++---- man/curl_translate.Rd | 5 man/httr2-package.Rd | 5 man/httr2_translate.Rd |only man/is_online.Rd | 2 man/jwt_claim.Rd | 4 man/oauth_client.Rd | 24 - man/oauth_client_req_auth.Rd | 8 man/oauth_server_metadata.Rd |only man/req_body.Rd | 4 man/req_oauth_auth_code.Rd | 20 man/req_oauth_bearer_jwt.Rd | 20 man/req_oauth_client_credentials.Rd | 13 man/req_oauth_device.Rd | 16 man/req_oauth_password.Rd | 13 man/req_oauth_refresh.Rd | 13 man/req_oauth_token_exchange.Rd | 13 man/req_perform_promise.Rd | 6 man/req_throttle.Rd | 18 man/resp_stream_raw.Rd | 18 man/throttle_status.Rd | 3 man/url_build.Rd | 6 man/url_modify.Rd | 6 man/url_parse.Rd | 6 tests/testthat/_snaps/httr2-translate.md |only tests/testthat/_snaps/last.md | 3 tests/testthat/_snaps/oauth-client.md | 31 + tests/testthat/_snaps/oauth-flow-auth-code.md | 9 tests/testthat/_snaps/oauth-server-metadata.md |only tests/testthat/_snaps/req-throttle.md | 23 + tests/testthat/_snaps/resp-stream-aws.md | 23 + tests/testthat/_snaps/resp-stream-lines.md |only tests/testthat/_snaps/resp-stream-sse.md |only tests/testthat/_snaps/resp-stream.md | 116 ++--- tests/testthat/helper-aws.R |only tests/testthat/helper-resp-stream.R |only tests/testthat/helper-sync.R | 80 ++- tests/testthat/helper-webfakes.R | 5 tests/testthat/helper.R | 12 tests/testthat/test-httr2-translate.R |only tests/testthat/test-oauth-client.R | 68 +++ tests/testthat/test-oauth-flow-auth-code.R | 35 + tests/testthat/test-oauth-flow-device.R |only tests/testthat/test-oauth-flow-jwt.R | 26 + tests/testthat/test-oauth-server-metadata.R |only tests/testthat/test-oauth.R | 23 + tests/testthat/test-parse.R | 9 tests/testthat/test-req-auth-aws.R | 70 +++ tests/testthat/test-req-body.R | 7 tests/testthat/test-req-cache.R | 28 + tests/testthat/test-req-mock.R | 17 tests/testthat/test-req-perform-connection.R | 12 tests/testthat/test-req-perform-iterative.R | 2 tests/testthat/test-req-perform-parallel.R | 7 tests/testthat/test-req-perform-sequential.R | 2 tests/testthat/test-req-perform.R | 2 tests/testthat/test-req-promise.R | 5 tests/testthat/test-req-throttle.R | 67 +++ tests/testthat/test-resp-stream-aws.R | 219 +++++++-- tests/testthat/test-resp-stream-lines.R |only tests/testthat/test-resp-stream-sse.R |only tests/testthat/test-resp-stream.R | 412 +++++------------- tests/testthat/test-url.R | 5 96 files changed, 1796 insertions(+), 1194 deletions(-)
Title: Automated Analysis of Multiplex Digital PCR Data
Description: The automated clustering and quantification of the digital PCR
data is based on the combination of 'DBSCAN' (Hahsler et al. (2019)
<doi:10.18637/jss.v091.i01>) and 'c-means' (Bezdek et al. (1981)
<doi:10.1007/978-1-4757-0450-1>) algorithms.
The analysis is independent of multiplexing geometry, dPCR system,
and input amount.
The details about input data and parameters are available in the
vignette.
Author: Alfonso De Falco [aut, cre] ,
Michel Mittelbronn [ctb],
Christophe Olinger [ctb],
Daniel Stieber [ctb],
Laboratoire national de sante [cph]
Maintainer: Alfonso De Falco <alfonsodefalco90@gmail.com>
Diff between dPCP versions 2.0.1 dated 2023-08-12 and 2.0.3 dated 2026-06-23
DESCRIPTION | 11 ++- MD5 | 38 ++++++------ R/1.input_data.R | 2 R/2.clustering_part1.R | 4 - R/3.clustering_part2.R | 10 ++- R/4.quantification_and_export.R | 8 +- R/dPCPclustering.R | 2 build/vignette.rds |binary inst/doc/dPCP_vignette.R | 120 ++++++++++++++++++++-------------------- man/dbscan_combination.Rd | 2 man/export_csv.Rd | 2 man/manual_correction.Rd | 2 man/plot.centers_data.Rd | 2 man/plot.cmeans_clus.Rd | 2 man/plot.dPCP.Rd | 4 - man/plot.rain_reclus.Rd | 2 man/plot.reference_dbscan.Rd | 2 man/replicates_quant.Rd | 2 man/report_dPCP.Rd | 2 man/target_quant.Rd | 2 20 files changed, 111 insertions(+), 108 deletions(-)
Title: Decorate a 'ggplot' with Associated Information
Description: For many times, we are not just aligning plots as what 'cowplot' and 'patchwork' did. Users would like to align associated information that requires axes to be exactly matched in subplots, e.g. hierarchical clustering with a heatmap. Inspired by the 'Method 2' in 'ggtree' (G Yu (2018) <doi:10.1093/molbev/msy194>), 'aplot' provides utilities to aligns associated subplots to a main plot at different sides (left, right, top and bottom) with axes exactly matched.
Author: Guangchuang Yu [aut, cre] ,
Shuangbin Xu [ctb] ,
Thomas Hackl [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between aplot versions 0.2.9 dated 2025-09-12 and 0.3.0 dated 2026-06-23
DESCRIPTION | 11 +++++----- MD5 | 21 ++++++++++++------- NAMESPACE | 1 NEWS.md | 5 ++++ R/aplot.R | 50 +++++++++++++++++++---------------------------- R/axis.R | 37 +++++++++++++++++++++++++++++++--- R/spacing.R |only build/partial.rdb |binary man/aplot-package.Rd | 5 ++++ man/reexports.Rd | 6 ++--- man/set_panel_spacing.Rd |only tests |only 12 files changed, 87 insertions(+), 49 deletions(-)
Title: Regional Spatial Modeling with Continuous Borders
Description: Automatically creates separate regression models for different spatial
regions. The prediction surface is smoothed using a regional border smoothing
method. If regional models are continuous, the resulting prediction surface is
continuous across the spatial dimensions, even at region borders. Methodology
is described in Wagstaff and Bean (2023) <doi:10.32614/RJ-2023-004>.
Author: Jadon Wagstaff [aut, cre],
Brennan Bean [aut]
Maintainer: Jadon Wagstaff <jadonw@gmail.com>
Diff between remap versions 0.3.2 dated 2025-01-09 and 0.3.3 dated 2026-06-23
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 9 +++++++++ R/data.R | 2 +- R/remap.R | 11 ++++++++--- R/utils.R | 3 +++ build/vignette.rds |binary inst/doc/Introduction_to_remap.html | 27 ++++++++++++++------------- man/utsnow.Rd | 2 +- 9 files changed, 48 insertions(+), 30 deletions(-)