Title: Animated Glass-Style Tabs and Multi-Select Filter for 'Shiny'
Description: Tools for creating animated glassmorphism-style tab
navigation and select filter widgets in 'Shiny' applications.
Provides a tab navigation component with a sliding glass halo
animation, a searchable multi-select dropdown, and a single-select
dropdown - all with multiple colour themes and server-side update
helpers. Tabs support icons, numeric badges, disable/enable toggling,
runtime append/remove, reactive rendering via 'renderGlassTabs()', URL
bookmarking, and compact mode for dashboard card layouts.
'glassTabCondition()' generates 'conditionalPanel()' condition strings
without needing to recall the internal input key pattern.
'glasstabs_news()' displays the release notes from the R console.
Built-in example apps can be launched with 'runGlassExample()'. All
widgets are compatible with standard 'Shiny' layouts and 'bs4Dash'
dashboards and 'bslib' themed applications. For full documentation
and examples see Arthur (2026) <https://prigasg.github.io/glasstabs/>.
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between glasstabs versions 0.3.2 dated 2026-05-23 and 0.3.3 dated 2026-06-24
DESCRIPTION | 27 MD5 | 108 NAMESPACE | 58 NEWS.md | 500 ++- R/dependencies.R | 241 - R/glassSelect.R | 247 + R/glass_multiselect.R | 457 +++ R/glass_select_theme.R | 2 R/glass_tab_theme.R | 286 +- R/glass_tabs.R | 1545 +++++------ R/zzz.R | 2 README.md | 985 +++---- inst/WORDLIST | 7 inst/doc/glassSelect.R | 47 inst/doc/glassSelect.Rmd | 91 inst/doc/glassSelect.html | 336 +- inst/doc/multiselect.R | 46 inst/doc/multiselect.Rmd | 88 inst/doc/multiselect.html | 345 +- inst/examples/basic/app.R | 116 inst/examples/bs4dash/app.R | 131 inst/examples/bslib |only inst/examples/dashboard/app.R | 35 inst/examples/server-select |only inst/examples/smoke-test/app.R | 485 +-- inst/examples/square-corners |only inst/www/glass.css | 2024 ++++++++------- inst/www/glass.js | 3879 +++++++++++++++-------------- man/glassMultiSelect.Rd | 226 - man/glassMultiSelectServer.Rd |only man/glassSelect.Rd | 34 man/glassSelectServer.Rd |only man/glassTabCondition.Rd | 4 man/glassTabPanel.Rd | 86 man/glassTabsOutput.Rd | 2 man/glassTabsServer.Rd | 4 man/glassTabsUI.Rd | 10 man/glass_tab_theme.Rd | 2 man/glasstabs_news.Rd | 42 man/runGlassExample.Rd | 69 man/updateGlassMultiSelect.Rd | 111 man/updateGlassSelect.Rd | 17 man/updateGlassTabBadge.Rd | 2 man/useGlassTabs.Rd | 4 tests/testthat.R | 17 tests/testthat/apps |only tests/testthat/test-browser-interactions.R |only tests/testthat/test-dependencies.R | 2 tests/testthat/test-glassselect.R | 99 tests/testthat/test-multiselect.R | 119 tests/testthat/test-new-features.R | 648 ++-- tests/testthat/test-public-readiness.R | 43 tests/testthat/test-roadmap-phase1.R | 324 +- tests/testthat/test-selectize-parity.R |only tests/testthat/test-server-select.R |only tests/testthat/test-square-corners.R |only tests/testthat/test-tabs.R | 97 tests/testthat/test-themes.R | 4 vignettes/glassSelect.Rmd | 91 vignettes/multiselect.Rmd | 88 60 files changed, 8064 insertions(+), 6169 deletions(-)
Title: Ready-to-Use Omics Formatting, Analysis, and Visualization
Pipeline
Description: Provides a flexible and streamlined pipeline for formatting, analyzing, and
visualizing omics data, regardless of omics type (e.g. transcriptomics, proteomics,
metabolomics). The package includes tools for shaping input data into analysis-ready
structures, fitting linear or mixed-effect models, extracting key contrasts, and
generating a rich variety of ready-to-use publication-quality plots.
Designed for transparency and reproducibility across a wide range of study designs,
with customizable components for statistical modeling.
Author: Laura Martinez-Gili [cre, aut, cph]
Maintainer: Laura Martinez-Gili <martinez.gili.laura@gmail.com>
Diff between readyomics versions 0.2.0 dated 2025-10-20 and 0.2.1 dated 2026-06-24
DESCRIPTION | 12 MD5 | 28 NEWS.md | 4 R/dana.R | 4 R/ready_plots.R | 14 R/utils_analysis.R | 31 build/partial.rdb |binary build/vignette.rds |binary inst/doc/readyomics.R | 276 +++--- inst/doc/readyomics.Rmd | 6 inst/doc/readyomics.html | 1574 +------------------------------------- man/adjust_pval.Rd | 2 man/permanova.Rd | 2 tests/testthat/test-ready_plots.R | 4 vignettes/readyomics.Rmd | 6 15 files changed, 257 insertions(+), 1706 deletions(-)
Title: LLM Wiki Engine
Description: Personal wiki engine with a large language model (LLM) as
research assistant. Supports guided sessions through a 'Claude Code'
<https://github.com/anthropics/claude-code> skill bundle and
autonomous research runs from R via autoresearch(). Results land in
a structured vault of markdown pages with 'YAML' frontmatter and
wikilinks, ready for hand-editing in your favourite editor
alongside the LLM. Vaults are seeded with 'CLAUDE.md' and
'AGENTS.md' so 'Claude Code', 'Codex'
<https://github.com/openai/codex>, and other agents share the same
operating instructions. Can adopt an existing 'Obsidian'
<https://obsidian.md/> vault in place via init_vault(adopt = TRUE).
Author: Troy Hernandez [aut, cre] ,
cornball.ai [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between pensar versions 0.6.3 dated 2026-05-19 and 0.6.4 dated 2026-06-24
DESCRIPTION | 8 - MD5 | 110 +++++++++++++------------- NAMESPACE | 1 NEWS.md | 49 +++++++++++ R/audits.R | 70 ++++++---------- R/autoresearch.R | 51 +++++------- R/autoresearch_backends.R | 26 ++---- R/autoresearch_steps.R | 110 ++++++++++++-------------- R/db.R | 32 ++++++- R/export.R | 154 ++++++++++++++++++++++++++++++++++--- R/git.R | 3 R/index.R | 10 -- R/ingest_agent_context.R | 14 +-- R/ingest_url.R | 5 - R/lint.R | 39 +++++++-- R/manifest.R | 32 +++---- R/outlinks.R | 15 +-- R/parse.R | 22 +++++ R/pensarignore.R |only R/registry.R | 4 R/retrieval.R | 66 ++++++--------- R/skills.R | 1 R/vault.R | 21 ++++- R/wiki_write.R | 3 build/partial.rdb |only inst/scripts/backlog.R |only inst/tinytest/test_autoresearch.R | 26 ++++++ inst/tinytest/test_export.R | 40 +++++++++ inst/tinytest/test_lint.R | 55 +++++++++---- inst/tinytest/test_parse.R | 20 ++++ inst/tinytest/test_resolve_vault.R | 14 +++ man/backlinks.Rd | 5 - man/dedup.Rd | 12 -- man/default_vault.Rd |only man/ingest.Rd | 5 - man/ingest_agent_context.Rd | 12 -- man/ingest_briefing.Rd | 2 man/ingest_repo.Rd | 23 ++--- man/ingest_url.Rd | 11 -- man/init_vault.Rd | 5 - man/lint.Rd | 5 - man/log_entry.Rd | 5 - man/manifest_path.Rd | 23 ++--- man/migrate_briefings_to_repos.Rd | 9 -- man/outlinks.Rd | 5 - man/pensar-package.Rd | 16 +-- man/pensar_skill_path.Rd | 5 - man/read_manifest.Rd | 2 man/search_pages.Rd | 7 - man/show_page.Rd | 5 - man/status.Rd | 5 - man/tags.Rd | 3 man/update_index.Rd | 5 - man/update_manifest.Rd | 3 man/vault_commit.Rd | 9 -- man/vault_export.Rd | 17 ++-- man/vault_graph.Rd | 5 - man/vault_registry.Rd | 43 ++++------ 58 files changed, 774 insertions(+), 474 deletions(-)
Title: Forecasting Models for Intermittent Time Series
Description: Extends the 'fable' framework to support forecasting methods
specifically designed for intermittent time series data, where demand
occurs sporadically with many zero values. All methods produce probabilistic
forecasts returned as 'distributional' objects. The returned forecasts can be
used to evaluate accuracy, plot and print the results seamlessly with 'fable'.
The methods include:
Harvey, Fernandes (1989) <doi:10.1080/07350015.1989.10509750>,
Willemain, Smart, Schwarz (2004) <doi:10.1016/S0169-2070(03)00013-X>,
Zhou, Viswanathan (2011) <doi:10.1016/j.ijpe.2010.09.021>,
Snyder, Ord, Beaumont (2012) <doi:10.1016/j.ijforecast.2011.03.009>,
Kolassa (2016) <doi:10.1016/j.ijforecast.2015.12.004>,
Hasni, Aguir, Babai, Jemai (2019) <doi:10.1080/00207543.2018.1424375>,
Damato, Azzimonti, Corani (2025) <doi:10.1016/j.ijforecast.2025.10.001>,
Sbrana (2025) <doi:10.1080/01605682.2025.2569661>.
Author: Stefano Damato [aut, cre, cph] ,
Lorenzo Zambon [aut] ,
Dario Azzimonti [aut]
Maintainer: Stefano Damato <stefanodamato128@gmail.com>
Diff between fable.intermittent versions 0.1.0 dated 2026-06-18 and 0.1.1 dated 2026-06-24
fable.intermittent-0.1.0/fable.intermittent/R/zzz.R |only fable.intermittent-0.1.0/fable.intermittent/man/model_sum.BETANBB.Rd |only fable.intermittent-0.1.0/fable.intermittent/man/model_sum.EMPDISTR.Rd |only fable.intermittent-0.1.0/fable.intermittent/man/model_sum.GAMPOISB.Rd |only fable.intermittent-0.1.0/fable.intermittent/man/model_sum.HSPES.Rd |only fable.intermittent-0.1.0/fable.intermittent/man/model_sum.MARWAL.Rd |only fable.intermittent-0.1.0/fable.intermittent/man/model_sum.NEGBINES.Rd |only fable.intermittent-0.1.0/fable.intermittent/man/model_sum.STATICDISTR.Rd |only fable.intermittent-0.1.0/fable.intermittent/man/model_sum.TWEES.Rd |only fable.intermittent-0.1.0/fable.intermittent/man/model_sum.VZ.Rd |only fable.intermittent-0.1.0/fable.intermittent/man/model_sum.WSS.Rd |only fable.intermittent-0.1.0/fable.intermittent/man/quantile.dist_inflated.Rd |only fable.intermittent-0.1.1/fable.intermittent/DESCRIPTION | 15 fable.intermittent-0.1.1/fable.intermittent/MD5 | 90 +--- fable.intermittent-0.1.1/fable.intermittent/NAMESPACE | 27 + fable.intermittent-0.1.1/fable.intermittent/NEWS.md | 14 fable.intermittent-0.1.1/fable.intermittent/R/betanbb.R | 28 - fable.intermittent-0.1.1/fable.intermittent/R/dist_tweedie.R | 10 fable.intermittent-0.1.1/fable.intermittent/R/empdistr.R | 29 - fable.intermittent-0.1.1/fable.intermittent/R/fable.intermittent-package.R | 6 fable.intermittent-0.1.1/fable.intermittent/R/gampoisb.R | 27 - fable.intermittent-0.1.1/fable.intermittent/R/hspes.R | 41 + fable.intermittent-0.1.1/fable.intermittent/R/marwal.R | 212 +--------- fable.intermittent-0.1.1/fable.intermittent/R/negbines.R | 32 - fable.intermittent-0.1.1/fable.intermittent/R/staticdistr.R | 51 +- fable.intermittent-0.1.1/fable.intermittent/R/twees.R | 36 + fable.intermittent-0.1.1/fable.intermittent/R/utils.R | 25 - fable.intermittent-0.1.1/fable.intermittent/R/vz.R | 28 - fable.intermittent-0.1.1/fable.intermittent/R/wss.R | 31 - fable.intermittent-0.1.1/fable.intermittent/README.md | 2 fable.intermittent-0.1.1/fable.intermittent/inst/doc/fable.intermittent.html | 24 - fable.intermittent-0.1.1/fable.intermittent/man/BETANBB.Rd | 5 fable.intermittent-0.1.1/fable.intermittent/man/EMPDISTR.Rd | 5 fable.intermittent-0.1.1/fable.intermittent/man/GAMPOISB.Rd | 5 fable.intermittent-0.1.1/fable.intermittent/man/HSPES.Rd | 5 fable.intermittent-0.1.1/fable.intermittent/man/MARWAL.Rd | 5 fable.intermittent-0.1.1/fable.intermittent/man/NEGBINES.Rd | 5 fable.intermittent-0.1.1/fable.intermittent/man/STATICDISTR.Rd | 5 fable.intermittent-0.1.1/fable.intermittent/man/TWEES.Rd | 5 fable.intermittent-0.1.1/fable.intermittent/man/VZ.Rd | 5 fable.intermittent-0.1.1/fable.intermittent/man/WSS.Rd | 5 fable.intermittent-0.1.1/fable.intermittent/tests/testthat/helper.R | 1 fable.intermittent-0.1.1/fable.intermittent/tests/testthat/test-betanbb.R | 6 fable.intermittent-0.1.1/fable.intermittent/tests/testthat/test-empdistr.R | 6 fable.intermittent-0.1.1/fable.intermittent/tests/testthat/test-gampoisb.R | 6 fable.intermittent-0.1.1/fable.intermittent/tests/testthat/test-hspes.R | 11 fable.intermittent-0.1.1/fable.intermittent/tests/testthat/test-marwal.R | 8 fable.intermittent-0.1.1/fable.intermittent/tests/testthat/test-negbines.R | 11 fable.intermittent-0.1.1/fable.intermittent/tests/testthat/test-staticdistr.R | 13 fable.intermittent-0.1.1/fable.intermittent/tests/testthat/test-twees.R | 11 fable.intermittent-0.1.1/fable.intermittent/tests/testthat/test-vz.R | 6 fable.intermittent-0.1.1/fable.intermittent/tests/testthat/test-wss.R | 6 52 files changed, 469 insertions(+), 394 deletions(-)
More information about fable.intermittent at CRAN
Permanent link
Title: Base R Code Formatter
Description: A minimal R code formatter following base R style conventions.
Formats R code with consistent spacing, indentation, and structure.
Author: Troy Hernandez [aut, cre] ,
Dirk Eddelbuettel [ctb] ,
cornball.ai [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between rformat versions 0.1.0 dated 2026-03-09 and 0.2.0 dated 2026-06-24
DESCRIPTION | 13 +- MD5 | 23 ++--- NEWS.md |only R/ast_else.R | 7 + R/ast_funcdef.R | 21 ++++ R/ast_wrap.R | 112 ++++++++++++++++++++---- R/rformat.R | 12 +- build/vignette.rds |binary inst/doc/rformat-options.html | 2 inst/tinytest/test_rformat.R | 190 ++++++++++++++++++++++++++++++++++++++++++ src/else.cpp | 10 ++ src/funcdef.cpp | 29 ++++++ src/wrap.cpp | 114 ++++++++++++++++++++++--- 13 files changed, 479 insertions(+), 54 deletions(-)
Title: Empirical Reservoir Eutrophication Modelling with Oklahoma
Calibration
Description: Empirical reservoir water quality modelling using Walker's
'BATHTUB' Model 1 (second-order available-phosphorus sedimentation)
from Walker (1985) <https://hdl.handle.net/11681/13884>
and Walker (1996) <https://hdl.handle.net/11681/4353> as the
default retention model. The Vollenweider (1976) hydraulic-
residence form and the equivalent formulation of Larsen and Mercier
(1976) are available as alternatives. Predicts in-lake total
phosphorus, total nitrogen, chlorophyll-a, and Secchi depth from
tributary nutrient and hydraulic loading inputs, and computes
Carlson (1977) <doi:10.4319/lo.1977.22.2.0361> Trophic State
Indices. Optional Oklahoma-specific chlorophyll and Secchi
regression coefficients are provided, calibrated from publicly
available state lake monitoring data. Supports single-segment and
multi-segment reservoir configurations and load-reduction scenario
analysis. Designed to complement watershed loading models such as
the Soil and Water Assessment Tool ('SWA [...truncated...]
Author: Jordon Henderson [aut, cre, cph]
Maintainer: Jordon Henderson <jordon.henderson@owrb.ok.gov>
Diff between okBATHTUB versions 0.1.10 dated 2026-05-29 and 0.1.11 dated 2026-06-24
DESCRIPTION | 6 MD5 | 42 +- NEWS.md | 49 +++ R/lake_ecoregions.R | 331 ++++++++++----------- R/okBATHTUB-package.R | 82 ++--- data/ok_lake_ecoregions.rda |binary data/ok_reservoirs.rda |binary inst/doc/getting-started.html | 36 +- inst/doc/hawqs-linkage.html | 26 - inst/doc/oklahoma-workflow.html | 96 +++--- inst/extdata |only man/dot-oklahoma_coefficients.Rd | 116 +++---- man/okBATHTUB-package.Rd | 192 ++++++------ man/ok_lake_ecoregions.Rd | 175 +++++------ man/ok_plot_segments.Rd | 90 ++--- tests/testthat/test-calibration-metadata.R | 219 ++++++-------- tests/testthat/test-inlake-tsi.R | 440 ++++++++++++++--------------- tests/testthat/test-lake-ecoregions.R | 276 +++++++++--------- tests/testthat/test-reservoirs.R | 303 +++++++++---------- 19 files changed, 1269 insertions(+), 1210 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2023, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Tim Gyger [aut],
Pascal Kuendig [aut],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the incl [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 1.6.7 dated 2026-04-27 and 1.6.8 dated 2026-06-24
DESCRIPTION | 8 MD5 | 43 R/GPModel.R | 21 R/gpb.Booster.R | 42 README.md | 4 configure.ac | 2 demo/GPBoost_algorithm.R | 39 demo/generalized_linear_Gaussian_process_mixed_effects_models.R | 33 man/GPModel.Rd | 13 man/GPModel_shared_params.Rd | 17 man/fitGPModel.Rd | 13 man/predict.GPModel.Rd | 4 man/predict.gpb.Booster.Rd | 21 src/Makevars.win | 2 src/include/GPBoost/likelihoods.h | 31 src/include/GPBoost/re_model_template.h | 686 +++++----- src/re_model.cpp | 6 tests/testthat/Rplots.pdf |only tests/testthat/_snaps |only tests/testthat/test_GPModel_combined_GP_random_effects.R | 10 tests/testthat/test_GPModel_gaussian_process.R | 4 tests/testthat/test_GPModel_non_Gaussian_data.R | 67 tests/testthat/test_z_GPBoost_algorithm.R | 12 tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data.R | 13 24 files changed, 595 insertions(+), 496 deletions(-)
Title: 'VigiBase' Pharmacovigilance Database Toolbox
Description: Perform the analysis of the World Health Organization
(WHO) Pharmacovigilance database 'VigiBase' (Extract Case Level version),
<https://who-umc.org/>
e.g., load data, perform data management,
disproportionality analysis, and descriptive statistics. Intended for
pharmacovigilance routine use or studies.
This package is NOT supported nor reflect the opinion of the WHO, or the
Uppsala Monitoring Centre.
Disproportionality methods are described by Norén et
al (2013) <doi:10.1177/0962280211403604>.
Author: Charles Dolladille [aut, cre] ,
Basile Chretien [aut] ,
Universite de Caen Normandie [cph] ,
Unite de pharmaco-epidemiologie [cph]
Maintainer: Charles Dolladille <cdolladille@hotmail.com>
Diff between vigicaen versions 1.0.0 dated 2026-02-06 and 2.0.0 dated 2026-06-24
vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/macos |only vigicaen-2.0.0/vigicaen/DESCRIPTION | 8 vigicaen-2.0.0/vigicaen/MD5 | 168 vigicaen-2.0.0/vigicaen/NAMESPACE | 6 vigicaen-2.0.0/vigicaen/NEWS.md | 853 ++-- vigicaen-2.0.0/vigicaen/R/add_dose.R | 6 vigicaen-2.0.0/vigicaen/R/add_drug.R | 6 vigicaen-2.0.0/vigicaen/R/check_data_type.R | 4 vigicaen-2.0.0/vigicaen/R/check_id_list.R | 22 vigicaen-2.0.0/vigicaen/R/create_example_tables.R | 500 +- vigicaen-2.0.0/vigicaen/R/data_doc.R | 6 vigicaen-2.0.0/vigicaen/R/desc_outcome.R | 346 - vigicaen-2.0.0/vigicaen/R/get_atc_code.R | 28 vigicaen-2.0.0/vigicaen/R/get_drecno.R | 39 vigicaen-2.0.0/vigicaen/R/get_llt_smq.R | 15 vigicaen-2.0.0/vigicaen/R/get_llt_soc.R | 2 vigicaen-2.0.0/vigicaen/R/query_data_type.R | 4 vigicaen-2.0.0/vigicaen/R/reader.R | 27 vigicaen-2.0.0/vigicaen/R/screen_adr.R | 364 - vigicaen-2.0.0/vigicaen/R/screen_drug.R | 272 - vigicaen-2.0.0/vigicaen/R/tb_subset.R | 14 vigicaen-2.0.0/vigicaen/R/tb_vigibase.R | 666 +-- vigicaen-2.0.0/vigicaen/R/tb_who.R | 629 --- vigicaen-2.0.0/vigicaen/R/vigi_routine.R | 1890 +++++----- vigicaen-2.0.0/vigicaen/build/partial.rdb |binary vigicaen-2.0.0/vigicaen/build/vignette.rds |binary vigicaen-2.0.0/vigicaen/data/drug_.rda |binary vigicaen-2.0.0/vigicaen/data/mp_.rda |binary vigicaen-2.0.0/vigicaen/data/thg_.rda |binary vigicaen-2.0.0/vigicaen/inst/doc/basic_workflow.Rmd | 8 vigicaen-2.0.0/vigicaen/inst/doc/basic_workflow.html | 25 vigicaen-2.0.0/vigicaen/inst/doc/getting_started.Rmd | 6 vigicaen-2.0.0/vigicaen/inst/doc/getting_started.html | 5 vigicaen-2.0.0/vigicaen/man/add_dose.Rd | 6 vigicaen-2.0.0/vigicaen/man/add_drug.Rd | 6 vigicaen-2.0.0/vigicaen/man/create_example_tables.Rd | 73 vigicaen-2.0.0/vigicaen/man/demo_.Rd | 2 vigicaen-2.0.0/vigicaen/man/get_atc_code.Rd | 10 vigicaen-2.0.0/vigicaen/man/get_drecno.Rd | 16 vigicaen-2.0.0/vigicaen/man/mp_.Rd | 4 vigicaen-2.0.0/vigicaen/man/tb_subset.Rd | 6 vigicaen-2.0.0/vigicaen/man/tb_vigibase.Rd | 10 vigicaen-2.0.0/vigicaen/man/tb_who.Rd | 10 vigicaen-2.0.0/vigicaen/man/vigicaen-package.Rd | 1 vigicaen-2.0.0/vigicaen/tests/testthat/Rplots.pdf |binary vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/add_adr.md | 256 - vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/add_dose.md | 8 vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/add_drug.md | 432 +- vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/add_ind.md | 64 vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/check_data_type.md | 1090 ++--- vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/check_id_list.md | 361 + vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/desc_cont.md | 144 vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/get_drecno.md | 10 vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/get_llt_soc.md | 3 vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/query_data_type.md | 116 vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/screen_drug.md | 10 vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/tb_meddra.md | 8 vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/tb_subset.md | 6 vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/tb_vigibase.md | 325 - vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/tb_who.md | 84 vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/exporting-arrow.svg |only vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-rechallenge-arrow.svg |only vigicaen-2.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-time-to-onset-arrow.svg |only vigicaen-2.0.0/vigicaen/tests/testthat/test-add_adr.R | 4 vigicaen-2.0.0/vigicaen/tests/testthat/test-add_dose.R | 52 vigicaen-2.0.0/vigicaen/tests/testthat/test-add_drug.R | 20 vigicaen-2.0.0/vigicaen/tests/testthat/test-add_ind.R | 14 vigicaen-2.0.0/vigicaen/tests/testthat/test-check_data_type.R | 8 vigicaen-2.0.0/vigicaen/tests/testthat/test-check_id_list.R | 45 vigicaen-2.0.0/vigicaen/tests/testthat/test-create_example_tables.R | 109 vigicaen-2.0.0/vigicaen/tests/testthat/test-desc_outcome.R | 2 vigicaen-2.0.0/vigicaen/tests/testthat/test-get_atc_code.R | 14 vigicaen-2.0.0/vigicaen/tests/testthat/test-get_drecno.R | 59 vigicaen-2.0.0/vigicaen/tests/testthat/test-get_llt_smq.R | 728 +-- vigicaen-2.0.0/vigicaen/tests/testthat/test-query_data_type.R | 2 vigicaen-2.0.0/vigicaen/tests/testthat/test-screen_drug.R | 6 vigicaen-2.0.0/vigicaen/tests/testthat/test-tb_subset.R | 1036 ++--- vigicaen-2.0.0/vigicaen/tests/testthat/test-tb_vigibase.R | 405 -- vigicaen-2.0.0/vigicaen/tests/testthat/test-tb_who.R | 42 vigicaen-2.0.0/vigicaen/tests/testthat/test-vigi_routine.R | 6 vigicaen-2.0.0/vigicaen/vignettes/basic_workflow.Rmd | 8 vigicaen-2.0.0/vigicaen/vignettes/getting_started.Rmd | 6 82 files changed, 5709 insertions(+), 5837 deletions(-)
Title: Minimal R Documentation Generator
Description: A deterministic, dependency-free documentation generator for R
packages. Generates valid Rd files and NAMESPACE from 'roxygen2'-style comments
using only base R. Supports a strict subset of tags with no markdown parsing,
no inference magic, and explicit-only behavior.
Author: Troy Hernandez [aut, cre] ,
cornball.ai [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between tinyrox versions 0.3.3 dated 2026-04-15 and 0.4.0 dated 2026-06-24
tinyrox-0.3.3/tinyrox/man/check_code_lines.Rd |only tinyrox-0.3.3/tinyrox/man/check_description_cran.Rd |only tinyrox-0.3.3/tinyrox/man/check_webservice_links.Rd |only tinyrox-0.3.3/tinyrox/man/escape_regex.Rd |only tinyrox-0.3.3/tinyrox/man/find_unquoted_names.Rd |only tinyrox-0.3.3/tinyrox/man/fix_description_cran.Rd |only tinyrox-0.3.3/tinyrox/man/get_dependency_packages.Rd |only tinyrox-0.3.3/tinyrox/man/get_maintainer_from_desc.Rd |only tinyrox-0.3.3/tinyrox/man/quote_names_in_text.Rd |only tinyrox-0.4.0/tinyrox/DESCRIPTION | 16 tinyrox-0.4.0/tinyrox/MD5 | 75 +- tinyrox-0.4.0/tinyrox/NAMESPACE | 2 tinyrox-0.4.0/tinyrox/NEWS.md | 14 tinyrox-0.4.0/tinyrox/R/check_code.R |only tinyrox-0.4.0/tinyrox/R/cran.R | 574 +----------------- tinyrox-0.4.0/tinyrox/R/document.R | 75 +- tinyrox-0.4.0/tinyrox/R/namespace.R | 196 +++--- tinyrox-0.4.0/tinyrox/R/parse.R | 205 +++--- tinyrox-0.4.0/tinyrox/R/rd.R | 446 ++++++++----- tinyrox-0.4.0/tinyrox/R/tags.R | 366 +++++------ tinyrox-0.4.0/tinyrox/README.md | 26 tinyrox-0.4.0/tinyrox/inst/tinytest/test_check_code.R |only tinyrox-0.4.0/tinyrox/inst/tinytest/test_cran.R | 89 -- tinyrox-0.4.0/tinyrox/inst/tinytest/test_namespace.R | 41 + tinyrox-0.4.0/tinyrox/inst/tinytest/test_parse.R | 95 ++ tinyrox-0.4.0/tinyrox/inst/tinytest/test_prune.R |only tinyrox-0.4.0/tinyrox/inst/tinytest/test_rd.R | 126 +++ tinyrox-0.4.0/tinyrox/inst/tinytest/test_rdname.R | 108 +++ tinyrox-0.4.0/tinyrox/inst/tinytest/test_tags.R | 68 ++ tinyrox-0.4.0/tinyrox/man/RD_MARKER.Rd |only tinyrox-0.4.0/tinyrox/man/SUPPORTED_DOC_TAGS.Rd | 2 tinyrox-0.4.0/tinyrox/man/SUPPORTED_TAGS.Rd | 2 tinyrox-0.4.0/tinyrox/man/assigned_names.Rd |only tinyrox-0.4.0/tinyrox/man/call_expr_text.Rd |only tinyrox-0.4.0/tinyrox/man/check_code_cran.Rd | 5 tinyrox-0.4.0/tinyrox/man/check_code_file.Rd |only tinyrox-0.4.0/tinyrox/man/check_code_tokens.Rd |only tinyrox-0.4.0/tinyrox/man/check_cran.Rd | 2 tinyrox-0.4.0/tinyrox/man/detect_s3_method.Rd | 3 tinyrox-0.4.0/tinyrox/man/document.Rd | 14 tinyrox-0.4.0/tinyrox/man/format_usage.Rd | 3 tinyrox-0.4.0/tinyrox/man/generate_all_rd.Rd | 5 tinyrox-0.4.0/tinyrox/man/generate_rd.Rd | 3 tinyrox-0.4.0/tinyrox/man/generate_rd_grouped.Rd | 3 tinyrox-0.4.0/tinyrox/man/prune_stale_rd.Rd |only tinyrox-0.4.0/tinyrox/man/render_sections.Rd |only tinyrox-0.4.0/tinyrox/man/root_function_name.Rd |only tinyrox-0.4.0/tinyrox/man/tinyrox_owns_rd.Rd |only tinyrox-0.4.0/tinyrox/man/token_root.Rd |only tinyrox-0.4.0/tinyrox/man/warn_dropped_directives.Rd |only 50 files changed, 1291 insertions(+), 1273 deletions(-)
Title: Minimal R Package Development Utilities
Description: Lightweight wrappers around 'R CMD INSTALL', 'R CMD check',
'R CMD build', 'win-builder' uploads, and 'CRAN' submission. Provides
functions for installing, loading, checking, building, and submitting
R packages with minimal dependencies (only 'curl' for uploads).
Background on R package development is in Wickham and Bryan (2023,
ISBN:9781098134945), "Writing R Extensions"
<https://cran.r-project.org/doc/manuals/R-exts.html>, and the 'CRAN'
Repository Policy <https://cran.r-project.org/web/packages/policies.html>.
Author: Troy Hernandez [aut, cre] ,
cornball.ai [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between tinypkgr versions 0.2.1 dated 2026-04-22 and 0.2.2 dated 2026-06-24
DESCRIPTION | 7 ++-- MD5 | 19 ++++++------- NAMESPACE | 1 NEWS.md | 5 +++ R/dev.R | 68 +++++++++++++++++++++++++++++++++++++++++------ R/release.R | 14 ++------- R/use.R | 44 +++++++----------------------- README.md | 2 - inst/tinytest/test_dev.R | 48 +++++++++++++++++++++++++++------ man/document.Rd |only man/load_all.Rd | 22 ++++++++++----- 11 files changed, 151 insertions(+), 79 deletions(-)
Title: Statistical Tools Designed for End Users
Description: The statistical tools in this package do one of four things:
1) Enhance basic statistical functions with more
flexible inputs, smarter defaults, and richer, clearer, and ready-to-use
output (e.g., t.test2())
2) Produce publication-ready commonly needed figures with one line of code (e.g., plot_cdf())
3) Implement novel analytical tools developed by the authors (e.g., twolines())
4) Deliver niche functions of high value to the authors that are not easily
available elsewhere (e.g., clear(), convert_to_sql(), resize_images()).
Author: Uri Simonsohn [aut, cre]
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between statuser versions 0.3.0 dated 2026-05-20 and 0.3.1 dated 2026-06-24
DESCRIPTION | 6 MD5 | 60 ++--- NEWS.md | 18 + R/lm2.R | 95 ++++++-- R/plot_cdf.R | 37 ++- R/plot_means.R | 153 +++++++++---- R/statuser-package.R | 10 R/stimulus.beeswarm.R | 2 R/stimulus.plot.R | 2 R/table2.R | 105 --------- R/utils.R | 33 -- R/validate.R | 19 + R/zzz.R | 6 README.md | 410 ++++++++++++++++-------------------- man/lm2.Rd | 5 man/plot_cdf.Rd | 5 man/plot_means.Rd | 6 man/print.lm2.Rd | 5 man/print.table2.Rd | 10 man/statuser-package.Rd | 10 man/stimulus.beeswarm.Rd | 2 man/stimulus.plot.Rd | 2 man/table2.Rd | 4 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/lm2.md | 14 - tests/testthat/_snaps/table2.md | 99 ++++---- tests/testthat/test-lm2.R | 102 ++++++++ tests/testthat/test-plot_cdf.R | 26 +- tests/testthat/test-plot_means.R | 95 ++++++++ tests/testthat/test-table2.R | 24 ++ tests/testthat/test-validate_plot.R | 47 ++++ 31 files changed, 851 insertions(+), 561 deletions(-)
Title: Principal Curves of Oriented Points
Description: Principal curves generalize the notion of a first principal component to the case in which it is a nonlinear smooth curve. This package provides a function pcop(X) to compute principal curves with the algorithm defined in Delicado (2001) <doi:10.1006/jmva.2000.1917> from a data matrix X.
Author: Pedro Delicado [aut] ,
Mario Huerta [aut] ,
Kevin Michael Frick [trl, aut, cre] ,
Stephen L. Moshier [cph] for symmetric matrix
eigendecomposition)
Maintainer: Kevin Michael Frick <kmfrick@proton.me>
This is a re-admission after prior archival of version 1.1 dated 2023-07-16
Diff between Rpcop versions 1.1 dated 2023-07-16 and 1.2.3 dated 2026-06-24
DESCRIPTION | 47 MD5 | 64 - NAMESPACE | 16 NEWS.md |only R/RcppExports.R | 17 R/Rpcop-package.R |only R/Rpcop.R | 341 +++++- R/srr-general-standards.R |only R/srr-testing-standards.R |only README.md |only build |only inst |only man/Rpcop-package.Rd |only man/pcop-methods.Rd |only man/pcop.Rd | 57 - man/pcop_backend.Rd | 13 src/RcppExports.cpp | 33 src/espai.h | 58 - src/espai_rba_f.cpp | 2544 +++++++++++++++++++++++----------------------- src/ll_flt.h | 60 - src/ll_p.cpp | 305 +++-- src/ll_p.h | 85 - src/ll_pnt.h | 14 src/ll_q.cpp | 5 src/ll_q.h | 6 src/ma.cpp | 52 src/ma.h | 12 src/main.cpp | 102 + src/mb.cpp | 197 ++- src/mb.h | 31 src/pila.cpp | 10 src/pila.h | 5 tests |only vignettes |only 34 files changed, 2305 insertions(+), 1769 deletions(-)
Title: Manipulate SNOMED CT Diagnosis Lists
Description: Functions and methods for manipulating 'SNOMED CT'
concepts. The package contains functions for loading the 'SNOMED CT'
release into a convenient R environment, selecting 'SNOMED CT'
concepts using regular expressions, and navigating the 'SNOMED CT'
ontology. It provides the 'SNOMEDconcept' S3 class for a vector of
'SNOMED CT' concepts (stored as 64-bit integers) and the
'SNOMEDcodelist' S3 class for a table of concepts IDs with
descriptions. The package can be used to construct sets of
'SNOMED CT' concepts for research (<doi:10.1093/jamia/ocac158>).
For more information about 'SNOMED CT' visit
<https://www.snomed.org/>.
Author: Anoop D. Shah [aut, cre]
Maintainer: Anoop D. Shah <anoop@doctors.org.uk>
This is a re-admission after prior archival of version 1.4.0 dated 2025-01-29
Diff between Rdiagnosislist versions 1.4.0 dated 2025-01-29 and 1.5.1 dated 2026-06-24
Rdiagnosislist-1.4.0/Rdiagnosislist/data/MANUAL_SYNONYMS.R |only Rdiagnosislist-1.4.0/Rdiagnosislist/data/MANUAL_SYNONYMS.csv |only Rdiagnosislist-1.5.1/Rdiagnosislist/DESCRIPTION | 14 Rdiagnosislist-1.5.1/Rdiagnosislist/MD5 | 66 Rdiagnosislist-1.5.1/Rdiagnosislist/NAMESPACE | 1 Rdiagnosislist-1.5.1/Rdiagnosislist/NEWS | 34 Rdiagnosislist-1.5.1/Rdiagnosislist/R/Rdiagnosislist.R | 2 Rdiagnosislist-1.5.1/Rdiagnosislist/R/SNOMEDcodelist.R | 22 Rdiagnosislist-1.5.1/Rdiagnosislist/R/addComposeLookupToCDB.R | 25 Rdiagnosislist-1.5.1/Rdiagnosislist/R/cdb.R | 495 ++++-- Rdiagnosislist-1.5.1/Rdiagnosislist/R/compose.R | 54 Rdiagnosislist-1.5.1/Rdiagnosislist/R/decompose.R | 47 Rdiagnosislist-1.5.1/Rdiagnosislist/R/loadSNOMED.R | 54 Rdiagnosislist-1.5.1/Rdiagnosislist/R/mapping.R | 49 Rdiagnosislist-1.5.1/Rdiagnosislist/R/orphanet.R | 4 Rdiagnosislist-1.5.1/Rdiagnosislist/build/vignette.rds |binary Rdiagnosislist-1.5.1/Rdiagnosislist/data/MANUAL_SYNONYMS.csv.gz |only Rdiagnosislist-1.5.1/Rdiagnosislist/data/MANUAL_SYNONYMS.rda |only Rdiagnosislist-1.5.1/Rdiagnosislist/inst/doc/SNOMEDcodelists.html | 792 ++++++---- Rdiagnosislist-1.5.1/Rdiagnosislist/inst/doc/convertingAndCreatingCodelists.html | 464 +++-- Rdiagnosislist-1.5.1/Rdiagnosislist/inst/doc/creatingConceptDatabaseForNLP.Rmd | 4 Rdiagnosislist-1.5.1/Rdiagnosislist/inst/doc/creatingConceptDatabaseForNLP.html | 353 +++- Rdiagnosislist-1.5.1/Rdiagnosislist/inst/doc/customHierarchy.html | 294 ++- Rdiagnosislist-1.5.1/Rdiagnosislist/man/Rdiagnosislist-package.Rd | 7 Rdiagnosislist-1.5.1/Rdiagnosislist/man/addComposeLookupToCDB.Rd | 6 Rdiagnosislist-1.5.1/Rdiagnosislist/man/addInactiveConcepts.Rd | 12 Rdiagnosislist-1.5.1/Rdiagnosislist/man/compose.Rd | 2 Rdiagnosislist-1.5.1/Rdiagnosislist/man/createCDB.Rd | 33 Rdiagnosislist-1.5.1/Rdiagnosislist/man/downloadOrphanet.Rd | 5 Rdiagnosislist-1.5.1/Rdiagnosislist/man/exportMiADECDB.Rd | 19 Rdiagnosislist-1.5.1/Rdiagnosislist/man/getMaps.Rd | 7 Rdiagnosislist-1.5.1/Rdiagnosislist/man/loadSNOMED.Rd | 3 Rdiagnosislist-1.5.1/Rdiagnosislist/tests/testthat/test_cdb.R | 31 Rdiagnosislist-1.5.1/Rdiagnosislist/tests/testthat/test_loadSNOMED.R | 50 Rdiagnosislist-1.5.1/Rdiagnosislist/tests/testthat/test_mapping.R | 11 Rdiagnosislist-1.5.1/Rdiagnosislist/vignettes/creatingConceptDatabaseForNLP.Rmd | 4 36 files changed, 1940 insertions(+), 1024 deletions(-)
More information about Rdiagnosislist at CRAN
Permanent link
Title: An R Package for Facilitating Large-Scale Latent Variable
Analyses in Mplus
Description: Leverages the R language to automate latent variable model estimation
and interpretation using 'Mplus', a powerful latent variable modeling program
developed by Muthen and Muthen (<https://www.statmodel.com>). Specifically, this package
provides routines for creating related groups of models, running batches of
models, and extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist [aut, cre],
Joshua Wiley [aut],
Caspar van Lissa [ctb],
Daniel Morillo [ctb]
Maintainer: Michael Hallquist <michael.hallquist@gmail.com>
Diff between MplusAutomation versions 1.2 dated 2025-09-02 and 1.3 dated 2026-06-24
MplusAutomation-1.2/MplusAutomation/man/dot-convertData.Rd |only MplusAutomation-1.2/MplusAutomation/man/dot-mplusMultinomial.Rd |only MplusAutomation-1.3/MplusAutomation/DESCRIPTION | 10 MplusAutomation-1.3/MplusAutomation/MD5 | 275 +++ MplusAutomation-1.3/MplusAutomation/NAMESPACE | 2 MplusAutomation-1.3/MplusAutomation/NEWS | 15 MplusAutomation-1.3/MplusAutomation/R/MplusAutomation.R | 8 MplusAutomation-1.3/MplusAutomation/R/extractAuxDis.R | 7 MplusAutomation-1.3/MplusAutomation/R/extractIndirect.R | 53 MplusAutomation-1.3/MplusAutomation/R/extractParameters.R | 4 MplusAutomation-1.3/MplusAutomation/R/extractRandomStarts.R |only MplusAutomation-1.3/MplusAutomation/R/extractSaveData.R | 9 MplusAutomation-1.3/MplusAutomation/R/extractSvalues.R |only MplusAutomation-1.3/MplusAutomation/R/extractTech10.R |only MplusAutomation-1.3/MplusAutomation/R/graphModels.R | 10 MplusAutomation-1.3/MplusAutomation/R/mixtures.R | 63 MplusAutomation-1.3/MplusAutomation/R/mplus.R | 126 - MplusAutomation-1.3/MplusAutomation/R/mplusModel.R | 718 ++++++++-- MplusAutomation-1.3/MplusAutomation/R/mplusVariableParser.R |only MplusAutomation-1.3/MplusAutomation/R/mplusglm.R | 18 MplusAutomation-1.3/MplusAutomation/R/parseOutput.R | 401 ++--- MplusAutomation-1.3/MplusAutomation/R/prepareMplusData.R | 40 MplusAutomation-1.3/MplusAutomation/R/readModels.R | 229 ++- MplusAutomation-1.3/MplusAutomation/R/summary.R | 171 ++ MplusAutomation-1.3/MplusAutomation/R/utilityFunctions.R | 372 ++++- MplusAutomation-1.3/MplusAutomation/build/vignette.rds |binary MplusAutomation-1.3/MplusAutomation/inst/doc/mplusModel.R |only MplusAutomation-1.3/MplusAutomation/inst/doc/mplusModel.Rmd |only MplusAutomation-1.3/MplusAutomation/inst/doc/mplusModel.html |only MplusAutomation-1.3/MplusAutomation/inst/doc/submitModels.html | 4 MplusAutomation-1.3/MplusAutomation/inst/doc/vignette.Rmd | 4 MplusAutomation-1.3/MplusAutomation/inst/doc/vignette.html | 44 MplusAutomation-1.3/MplusAutomation/man/HTMLSummaryTable.Rd | 6 MplusAutomation-1.3/MplusAutomation/man/LatexSummaryTable.Rd | 6 MplusAutomation-1.3/MplusAutomation/man/MplusAutomation.Rd | 4 MplusAutomation-1.3/MplusAutomation/man/MplusAutomationUtils.Rd | 18 MplusAutomation-1.3/MplusAutomation/man/SummaryTable.Rd | 6 MplusAutomation-1.3/MplusAutomation/man/convertData.Rd |only MplusAutomation-1.3/MplusAutomation/man/createMixtures.Rd | 4 MplusAutomation-1.3/MplusAutomation/man/extractMplusVariables.Rd |only MplusAutomation-1.3/MplusAutomation/man/extractRandomStarts.Rd |only MplusAutomation-1.3/MplusAutomation/man/extractSummaries_1plan.Rd | 3 MplusAutomation-1.3/MplusAutomation/man/extractSvalues.Rd |only MplusAutomation-1.3/MplusAutomation/man/extractTech10.Rd | 5 MplusAutomation-1.3/MplusAutomation/man/getMultilineSection.Rd | 4 MplusAutomation-1.3/MplusAutomation/man/getSavedata_Bparams.Rd | 4 MplusAutomation-1.3/MplusAutomation/man/get_results.Rd | 4 MplusAutomation-1.3/MplusAutomation/man/mixtureSummaryTable.Rd | 6 MplusAutomation-1.3/MplusAutomation/man/mplusGLM.Rd | 2 MplusAutomation-1.3/MplusAutomation/man/mplusModel.Rd | 9 MplusAutomation-1.3/MplusAutomation/man/mplusModel_r6.Rd | 52 MplusAutomation-1.3/MplusAutomation/man/mplusModeler.Rd | 9 MplusAutomation-1.3/MplusAutomation/man/mplusMultinomial.Rd |only MplusAutomation-1.3/MplusAutomation/man/readModels.Rd | 7 MplusAutomation-1.3/MplusAutomation/man/sanitize_mplus_text.Rd |only MplusAutomation-1.3/MplusAutomation/tests/testthat/iris_1_class.out | 6 MplusAutomation-1.3/MplusAutomation/tests/testthat/iris_2_class.out | 6 MplusAutomation-1.3/MplusAutomation/tests/testthat/iris_3_class.out | 6 MplusAutomation-1.3/MplusAutomation/tests/testthat/mplus_batch_files/1_ex3.1.sbatch | 2 MplusAutomation-1.3/MplusAutomation/tests/testthat/mplus_batch_files/2_ex3.2.sbatch | 2 MplusAutomation-1.3/MplusAutomation/tests/testthat/mplus_batch_files/3_ex3.3.sbatch | 2 MplusAutomation-1.3/MplusAutomation/tests/testthat/mplus_batch_files/4_ex3.4.sbatch | 2 MplusAutomation-1.3/MplusAutomation/tests/testthat/mplus_batch_files/5_ex3.5.sbatch | 2 MplusAutomation-1.3/MplusAutomation/tests/testthat/mplus_ug/8.11/ch5 |only MplusAutomation-1.3/MplusAutomation/tests/testthat/mplus_ug/8.11/ch7 |only MplusAutomation-1.3/MplusAutomation/tests/testthat/mplus_ug/8.11/ch8/ex8.6_svalues.inp |only MplusAutomation-1.3/MplusAutomation/tests/testthat/mplus_ug/8.11/ch8/ex8.6_svalues.out |only MplusAutomation-1.3/MplusAutomation/tests/testthat/submitModels/job_combine/batchfiles |only MplusAutomation-1.3/MplusAutomation/tests/testthat/svalues |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-data-summary.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-empty-section-contract.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-encoding-robustness.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-issue158_createmixtures.R | 7 MplusAutomation-1.3/MplusAutomation/tests/testthat/test-issue206.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-lca.R | 114 + MplusAutomation-1.3/MplusAutomation/tests/testthat/test-model-table.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-mplusModel.R | 616 ++++++++ MplusAutomation-1.3/MplusAutomation/tests/testthat/test-sampstat-missing.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-section-parsing.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-svalues.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-tech10.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-tech4.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-typed-empties.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-ug-ch5.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/test-variable-detection.R |only MplusAutomation-1.3/MplusAutomation/tests/testthat/three_cov.out |only MplusAutomation-1.3/MplusAutomation/tests/testthat/threeclass1.out |only MplusAutomation-1.3/MplusAutomation/vignettes/mplusModel.Rmd |only MplusAutomation-1.3/MplusAutomation/vignettes/vignette.Rmd | 4 89 files changed, 2773 insertions(+), 728 deletions(-)
More information about MplusAutomation at CRAN
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Title: Hybrid Markov Chain Monte Carlo Using Gaussian Processes
Description: Hybrid Markov chain Monte Carlo (MCMC) for sampling from
multimodal target distributions when derivatives are unavailable.
A Gaussian process approximation is used to emulate derivatives,
enabling efficient exploration with parallel tempering. The method
is described in Fielding, Nott and Liong (2011)
<doi:10.1198/TECH.2010.09195>. The research was carried out as part
of the Singapore-Delft Water Alliance Multi-Objective Multi-Reservoir
Management programme (R-264-001-272).
Author: Mark J. Fielding [aut, cre]
Maintainer: Mark J. Fielding <mark.fielding@gmx.com>
This is a re-admission after prior archival of version 5.4 dated 2020-11-12
Diff between MCMChybridGP versions 5.4 dated 2020-11-12 and 7.0.1 dated 2026-06-24
MCMChybridGP-5.4/MCMChybridGP/src/MCMChybridGP.c |only MCMChybridGP-7.0.1/MCMChybridGP/DESCRIPTION | 46 - MCMChybridGP-7.0.1/MCMChybridGP/MD5 | 18 MCMChybridGP-7.0.1/MCMChybridGP/NAMESPACE | 22 MCMChybridGP-7.0.1/MCMChybridGP/R/GProcess.R | 192 ++-- MCMChybridGP-7.0.1/MCMChybridGP/R/MCMChybridGP-internal.R | 52 + MCMChybridGP-7.0.1/MCMChybridGP/R/RcppExports.R |only MCMChybridGP-7.0.1/MCMChybridGP/R/hybrid.explore.R | 630 ++++++++------ MCMChybridGP-7.0.1/MCMChybridGP/R/hybrid.sample.R | 226 +++-- MCMChybridGP-7.0.1/MCMChybridGP/man/hybrid.sample.Rd | 2 MCMChybridGP-7.0.1/MCMChybridGP/src/MCMChybridGP.cpp |only MCMChybridGP-7.0.1/MCMChybridGP/src/RcppExports.cpp |only 12 files changed, 738 insertions(+), 450 deletions(-)
Title: Statistical Combination of Diagnostic Tests
Description: A system for combining two diagnostic tests using various approaches
that include statistical and machine-learning-based methodologies.
These approaches are divided into four groups: linear combination
methods, non-linear combination methods, mathematical operators,
and machine learning algorithms. See
the <https://biotools.erciyes.edu.tr/dtComb/> website
for more information, documentation, and examples.
Author: Serra Ilayda Yerlitas Tastan [aut, ctb],
Serra Bersan Gengec [aut, ctb],
Necla Kochan [aut, ctb],
Gozde Erturk Zararsiz [aut, ctb],
Selcuk Korkmaz [aut, ctb],
Gokmen Zararsiz [aut, ctb, cre]
Maintainer: Gokmen Zararsiz <gokmen.zararsiz@gmail.com>
Diff between dtComb versions 1.0.7 dated 2025-03-30 and 1.0.8 dated 2026-06-24
DESCRIPTION | 12 - LICENSE | 2 MD5 | 86 ++++++------ R/linComb.R | 202 ++++++----------------------- R/mathComb.R | 192 ++++------------------------ R/mlComb.R | 267 +++++++++++++++++++++------------------ R/nonlinComb.R | 183 +++++++------------------- R/plotComb.R | 4 R/predict.dtComb.R | 7 - R/printtrain.R | 4 R/rocsum.R | 10 - R/standardization.R | 6 R/validator.R |only inst/doc/vignettedtComb.R | 6 inst/doc/vignettedtComb.Rnw | 11 - inst/doc/vignettedtComb.pdf |binary man/availableMethods.Rd | 2 man/dtComb.Rd | 2 man/helper_PCL.Rd | 2 man/helper_PT.Rd | 2 man/helper_TS.Rd | 2 man/helper_minimax.Rd | 2 man/helper_minmax.Rd | 2 man/kappa.accuracy.Rd | 2 man/linComb.Rd | 6 man/mathComb.Rd | 6 man/mlComb.Rd | 48 ++++--- man/nonlinComb.Rd | 6 man/plotComb.Rd | 4 man/predict.dtComb.Rd | 6 man/print_train.Rd | 2 man/rocsum.Rd | 4 man/std.test.Rd | 2 man/std.train.Rd | 2 man/transform_math.Rd | 2 man/validateLinComb.Rd |only man/validateMathComb.Rd |only man/validateMlComb.Rd |only man/validateNonlinComb.Rd |only man/validateParameters.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test-linComb.R | 37 +++-- tests/testthat/test-mathComb.R | 39 ++--- tests/testthat/test-mlComb.R | 20 +- tests/testthat/test-nonlinComb.R | 32 ++-- vignettes/dtComb.bib | 11 - vignettes/vignettedtComb.Rnw | 11 - 47 files changed, 492 insertions(+), 754 deletions(-)
Title: Mutation Testing
Description: Measure quality of your tests.
'muttest' introduces small changes (mutations) to your code
and runs your tests to check if they catch the changes.
If they do, your tests are good.
If not, your assertions are not specific enough.
'muttest' gives you percent score of how often your tests catch the changes.
Author: Jakub Sobolewski [aut, cre]
Maintainer: Jakub Sobolewski <jakupsob@gmail.com>
Diff between muttest versions 0.2.0 dated 2026-05-14 and 0.2.1 dated 2026-06-24
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 4 ++++ R/mutator-boolean.R | 4 ++-- R/mutator-call.R | 2 +- R/mutator-condition.R | 2 +- R/mutator-index.R | 4 ++-- R/mutator-na.R | 2 +- R/mutator-numeric.R | 2 +- R/mutator-operator.R | 8 ++++++-- R/mutator-return.R | 5 ++++- R/mutator-statement.R | 10 +++++----- R/mutator-string.R | 4 ++-- R/mutator-unary.R | 2 +- 14 files changed, 47 insertions(+), 36 deletions(-)
Title: Create Vector Tiles from Spatial Data
Description: Create vector tile archives in 'PMTiles' format from 'sf' spatial
data frames. Supports 'Mapbox Vector Tile' ('MVT') and 'MapLibre Tile'
('MLT') output formats. Uses a 'Rust' backend via 'extendr' for fast,
in-memory tiling with zero external system dependencies.
Author: Kyle Walker [aut, cre]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between freestiler versions 0.1.7 dated 2026-05-12 and 0.2.0 dated 2026-06-24
DESCRIPTION | 10 +- MD5 | 21 +++--- NAMESPACE | 2 NEWS.md | 26 +++++++ R/freestile_h3.R |only man/freestile_h3.Rd |only man/view_h3_tiles.Rd |only src/rust/Cargo.lock | 68 +++++++++---------- src/rust/freestiler-core/src/lib.rs | 1 src/rust/freestiler-core/src/mlt.rs | 101 +++++++++------------------- src/rust/freestiler-core/src/mvt.rs | 108 ++++++------------------------- src/rust/freestiler-core/src/quantize.rs |only src/rust/vendor.tar.xz |binary tests/testthat/test-h3.R |only 14 files changed, 136 insertions(+), 201 deletions(-)
Title: DSM and LiDAR Downloader
Description: A collection of functions to search and download
DSM (Digital Surface Model) and LiDAR (Light Detection and Ranging) data via APIs,
including 'OpenTopography' <https://portal.opentopography.org/apidocs/> and
'TNMAccess' <https://apps.nationalmap.gov/tnmaccess/#/>.
Author: Xiaohao Yang [aut, cre, cph],
Nathan Fox [aut],
Derek Van Berkel [aut],
Mark Lindquist [aut]
Maintainer: Xiaohao Yang <xiaohaoy@umich.edu>
This is a re-admission after prior archival of version 1.2.2 dated 2025-10-24
Diff between dsmSearch versions 1.2.2 dated 2025-10-24 and 1.2.4 dated 2026-06-24
dsmSearch-1.2.2/dsmSearch/R/sysdata.rda |only dsmSearch-1.2.4/dsmSearch/DESCRIPTION | 20 dsmSearch-1.2.4/dsmSearch/MD5 | 20 dsmSearch-1.2.4/dsmSearch/NAMESPACE | 7 dsmSearch-1.2.4/dsmSearch/R/canopy_height_internal.R |only dsmSearch-1.2.4/dsmSearch/R/get_dsm_30.R | 9 dsmSearch-1.2.4/dsmSearch/R/get_lidar.R | 28 - dsmSearch-1.2.4/dsmSearch/R/lidar_search.R | 2 dsmSearch-1.2.4/dsmSearch/R/utils.R | 375 -------------- dsmSearch-1.2.4/dsmSearch/build/vignette.rds |binary dsmSearch-1.2.4/dsmSearch/man/get_lidar.Rd | 27 - dsmSearch-1.2.4/dsmSearch/tests/testthat/test-get_lidar.R | 9 12 files changed, 53 insertions(+), 444 deletions(-)
Title: Imputation for Proteomics
Description: Functions to analyse missing value mechanisms and to impute data sets in the context of bottom-up MS-based proteomics.
Author: Quentin Giai Gianetto [aut, cre],
Samuel Wieczorek [ctb],
Yohann Coute [ctb],
Thomas Burger [aut]
Maintainer: Quentin Giai Gianetto <quentin.giaigianetto@pasteur.fr>
Diff between imp4p versions 1.2 dated 2021-09-02 and 1.3 dated 2026-06-24
DESCRIPTION | 21 +- MD5 | 26 +-- NAMESPACE | 2 R/impute_RF.R | 22 -- R/impute_mi.R | 25 --- R/impute_mix.R | 17 -- R/impute_slsa.R | 446 +++++++++++++++++++++++++++--------------------------- R/mi_mix.R | 16 - build/partial.rdb |binary man/impute_PCA.Rd | 4 man/impute_RF.Rd | 32 +-- man/impute_mi.Rd | 18 -- man/impute_mix.Rd | 20 -- man/mi_mix.Rd | 20 -- 14 files changed, 302 insertions(+), 367 deletions(-)
Title: Comprehensive R Wrapper and Shiny Interface for 'Alphavantage
Financial Data' API
Description: Download, manage, and visualize via Shiny App 'Alphavantage financial data' <https://www.alphavantage.co/documentation/>. Data is downloaded and organized into `data.table` objects using a single calling function with optional helper functions to extract and simplify more complex data. A Shiny interface is also provided to download, manage, and graph asset prices and characteristics.
Author: Derek Holmes [aut, cre, cph]
Maintainer: Derek Holmes <derek@derekholmes.com>
Diff between alphavantagepf versions 0.8.0 dated 2026-06-22 and 0.8.1 dated 2026-06-24
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 8 ++++++++ R/preamble.R | 17 ++++++++++++----- 4 files changed, 26 insertions(+), 11 deletions(-)
More information about alphavantagepf at CRAN
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Title: Identify Rogue Taxa in Sets of Phylogenetic Trees
Description: Rogue ("wildcard") taxa are leaves with uncertain phylogenetic
position.
Their position may vary from tree to tree under inference methods that yield a
tree set (e.g. bootstrapping, Bayesian tree searches, maximum parsimony).
The presence of rogue taxa in a tree set can potentially remove all
information from a consensus tree. The information content of a consensus
tree - a function of its resolution and branch support values - can often be
increased by removing rogue taxa.
'Rogue' provides an explicitly information-theoretic approach to rogue
detection (Smith 2022) <doi:10.1093/sysbio/syab099>,
and an interface to 'RogueNaRok' (Aberer et al. 2013)
<doi:10.1093/sysbio/sys078>.
Author: Martin R. Smith [aut, cre, cph] ,
Andre J. Aberer [aut, cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Rogue versions 2.2.0 dated 2026-03-25 and 2.2.1 dated 2026-06-24
DESCRIPTION | 12 - MD5 | 28 +- NAMESPACE | 8 NEWS.md | 6 R/RogueTaxa.R | 11 R/SPIC.R | 4 R/stability.R | 562 +++++++++++++++++++++++------------------------- build/partial.rdb |binary inst/doc/Bayesian.html | 4 man/RogueTaxa.Rd | 15 - man/TipInstability.Rd | 4 src/Makevars | 7 src/Rogue_init.c | 2 src/geodesic.h |only src/graph_geodesic.c | 2 src/tip_instability.cpp |only 16 files changed, 343 insertions(+), 322 deletions(-)
Title: Make Symmetric and Asymmetric ARDL Estimations
Description: Implements estimation procedures for Autoregressive Distributed Lag (ARDL)
and Nonlinear ARDL (NARDL) models, which allow researchers to investigate both
short- and long-run relationships in time series data under mixed orders of integration.
The package supports simultaneous modeling of symmetric and asymmetric regressors,
flexible treatment of short-run and long-run asymmetries, and automated equation handling.
It includes several cointegration testing approaches such as the Pesaran-Shin-Smith F
and t bounds tests, and narayan test.
Methodological foundations are provided in Pesaran, Shin, and Smith (2001)
<doi:10.1016/S0304-4076(01)00049-5> and Shin, Yu, and Greenwood-Nimmo (2014, ISBN:9780123855079).
Author: Huseyin karamelikli [aut, cre] ,
Huseyin Utku Demir [aut]
Maintainer: Huseyin karamelikli <hakperest@gmail.com>
Diff between kardl versions 1.3.1 dated 2026-04-30 and 2.0.2 dated 2026-06-24
kardl-1.3.1/kardl/inst/examples |only kardl-1.3.1/kardl/man/modelCriterion.Rd |only kardl-2.0.2/kardl/DESCRIPTION | 18 kardl-2.0.2/kardl/MD5 | 108 kardl-2.0.2/kardl/NAMESPACE | 39 kardl-2.0.2/kardl/NEWS.md | 58 kardl-2.0.2/kardl/R/critvals.R |only kardl-2.0.2/kardl/R/data.R | 24 kardl-2.0.2/kardl/R/extract.R |only kardl-2.0.2/kardl/R/kardl-package.R |only kardl-2.0.2/kardl/R/kardl.R | 1801 ++++-- kardl-2.0.2/kardl/R/longrun.R | 281 - kardl-2.0.2/kardl/R/miscellaneous.R | 409 - kardl-2.0.2/kardl/R/multipliers.R | 1122 ++-- kardl-2.0.2/kardl/R/prepare.R | 1259 ++-- kardl-2.0.2/kardl/R/print.R | 532 + kardl-2.0.2/kardl/R/srr-stats-standards.R | 510 + kardl-2.0.2/kardl/R/tests.R | 2727 ++++++---- kardl-2.0.2/kardl/R/zzz.R | 128 kardl-2.0.2/kardl/README.md | 325 - kardl-2.0.2/kardl/build/partial.rdb |only kardl-2.0.2/kardl/build/vignette.rds |binary kardl-2.0.2/kardl/data/imf_example_data.rda |binary kardl-2.0.2/kardl/inst/doc/intro.R | 217 kardl-2.0.2/kardl/inst/doc/intro.Rmd | 263 kardl-2.0.2/kardl/inst/doc/intro.html | 642 +- kardl-2.0.2/kardl/man/bootstrap.Rd | 145 kardl-2.0.2/kardl/man/ecm.Rd | 332 - kardl-2.0.2/kardl/man/figures/lifecycle-deprecated.svg |only kardl-2.0.2/kardl/man/figures/lifecycle-experimental.svg |only kardl-2.0.2/kardl/man/figures/lifecycle-stable.svg |only kardl-2.0.2/kardl/man/figures/lifecycle-superseded.svg |only kardl-2.0.2/kardl/man/imf_example_data.Rd | 20 kardl-2.0.2/kardl/man/kardl-package.Rd |only kardl-2.0.2/kardl/man/kardl.Rd | 342 - kardl-2.0.2/kardl/man/kardl_extract.Rd |only kardl-2.0.2/kardl/man/kardl_get.Rd | 17 kardl-2.0.2/kardl/man/kardl_longrun.Rd | 82 kardl-2.0.2/kardl/man/kardl_reset.Rd | 9 kardl-2.0.2/kardl/man/kardl_set.Rd | 27 kardl-2.0.2/kardl/man/lmerge.Rd | 61 kardl-2.0.2/kardl/man/model_criterion.Rd |only kardl-2.0.2/kardl/man/mplier.Rd | 160 kardl-2.0.2/kardl/man/narayan.Rd | 119 kardl-2.0.2/kardl/man/parse_formula_vars.Rd | 32 kardl-2.0.2/kardl/man/parse_model_specs.Rd |only kardl-2.0.2/kardl/man/pssf.Rd | 138 kardl-2.0.2/kardl/man/psst.Rd | 93 kardl-2.0.2/kardl/man/symmetrytest.Rd | 249 kardl-2.0.2/kardl/tests/testthat/Rplots.pdf |binary kardl-2.0.2/kardl/tests/testthat/test-bounds-tests.R |only kardl-2.0.2/kardl/tests/testthat/test-comprehensive-coverage.R |only kardl-2.0.2/kardl/tests/testthat/test-decision-advanced.R |only kardl-2.0.2/kardl/tests/testthat/test-error-conditions.R |only kardl-2.0.2/kardl/tests/testthat/test-extract-advanced.R |only kardl-2.0.2/kardl/tests/testthat/test-extract.R |only kardl-2.0.2/kardl/tests/testthat/test-kardl.R | 158 kardl-2.0.2/kardl/tests/testthat/test-miscellaneous-advanced.R |only kardl-2.0.2/kardl/tests/testthat/test-multipliers.R | 95 kardl-2.0.2/kardl/tests/testthat/test-parse-model-specs.R |only kardl-2.0.2/kardl/tests/testthat/test-print-advanced.R |only kardl-2.0.2/kardl/tests/testthat/test-print-summary.R | 61 kardl-2.0.2/kardl/tests/testthat/test-print.R |only kardl-2.0.2/kardl/tests/testthat/test-settings.R | 80 kardl-2.0.2/kardl/tests/testthat/test-tests.R | 187 kardl-2.0.2/kardl/tests/testthat/test-utils.R | 96 kardl-2.0.2/kardl/vignettes/intro.Rmd | 263 67 files changed, 8218 insertions(+), 5011 deletions(-)
Title: Plot the Effects of Variables in Interaction Terms
Description: Plots the conditional coefficients ("marginal effects") of
variables included in multiplicative interaction terms.
Author: Frederick Solt [aut],
Yue Hu [aut, cre],
Brenton Kenkel [ctb]
Maintainer: Yue Hu <yuehu@tsinghua.edu.cn>
Diff between interplot versions 0.2.3 dated 2021-02-18 and 1.2.0 dated 2026-06-24
DESCRIPTION | 17 MD5 | 59 +- NAMESPACE | 21 NEWS.md | 65 ++ R/Interplot.R | 41 - R/Interplot_brms.R |only R/Interplot_default.R | 975 +++++++++++++++++++++------------- R/Interplot_mi.R | 1117 +++++++++++++++++---------------------- R/Interplot_mlm.R | 942 ++++++++++++++------------------ R/Interplot_mlmmi.R | 996 ++++++++++++++++------------------ R/Interplot_plot.R | 455 ++++++++++++--- R/bin_layer.R |only R/johnson_neyman.R |only R/utils.R |only README.md | 2 build/vignette.rds |binary inst/doc/interplot-vignette.R | 50 + inst/doc/interplot-vignette.Rmd | 112 +++ inst/doc/interplot-vignette.html | 995 ++++++++++++++++++++++++++-------- man/bin_layer.Rd |only man/interplot.Rd | 15 man/interplot.brmsfit.Rd |only man/interplot.default.Rd | 11 man/interplot.lmerMod.Rd | 9 man/interplot.lmmi.Rd | 13 man/interplot.mlmmi.Rd | 11 man/interplot.plot.Rd | 3 man/jn_interval.Rd |only man/jn_layer.Rd |only tests |only vignettes/interplot-vignette.Rmd | 112 +++ vignettes/vignette.bib | 4 32 files changed, 3555 insertions(+), 2470 deletions(-)
More information about productshotaiR at CRAN
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Title: Create Non-Confidential Multi-Resolution Grids
Description: The need for anonymization of individual survey responses often leads to many suppressed grid cells in a regular grid. Here we provide functionality for creating multi-resolution gridded data, respecting the confidentiality rules, such as a minimum number of units and dominance by one or more units for each grid cell. The functions also include the possibility for contextual suppression of data. For more details see Skoien et al. (2025) <doi:10.48550/arXiv.2410.17601>.
Author: Jon Olav Skoien [aut, cre],
Nicolas Lampach [aut]
Maintainer: Jon Olav Skoien <jon.skoien@gmail.com>
Diff between MRG versions 0.3.25 dated 2026-02-26 and 0.3.29 dated 2026-06-24
DESCRIPTION | 6 - MD5 | 43 +++++---- NAMESPACE | 8 + R/MRGmerge.R | 216 +++++++++++++++++++++++++++++++++++++++++++++---- R/MRGplot.R | 4 R/confid.R | 5 - R/createMRGobject.R | 24 ++++- R/fssgeo.R | 1 R/gridData.R | 52 +++++++---- R/gridData2.R |only R/ifsDoc.R | 3 R/ifsDoc_himg5.R |only R/multiResGrid.R | 37 ++++++-- R/remSmall.R | 4 R/roxygen_eval.R | 31 +++++-- data/himg5.rda |only man/MRGplot.Rd | 5 - man/MRGpostProcess.Rd | 16 ++- man/createMRGobject.Rd | 29 +++++- man/gridData.Rd | 5 + man/gridData2.Rd |only man/himg5.Rd |only man/ifs_dk.Rd | 5 - man/multiResGrid.Rd | 28 ++++-- man/remSmall.Rd | 4 25 files changed, 416 insertions(+), 110 deletions(-)
More information about hypergraph.sizing at CRAN
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More information about ExtremeConformal at CRAN
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Title: Access 'umwelt.info' API
Description: Provides an R-based access to the datasets including their
resources from the portal <https://umwelt.info>. The package allows for
an easy integration of those datasets into your R-based workflows. The
functionality of the package mirrors the web-based access as provided
at <https://umwelt.info>. You can use the same queries and get the same
datasets by accessing our API.
Author: Johannes Vogel [aut, cre],
Maximilian Berthold [aut],
Luise Quoss [ctb],
Nationales Zentrum fuer Umwelt- und Naturschutzinformationen [cph]
Maintainer: Johannes Vogel <johannes.vogel@uba.de>
Diff between umweltapir versions 0.2.0 dated 2026-06-18 and 0.2.1 dated 2026-06-24
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/fetch_api.R | 3 ++- 4 files changed, 12 insertions(+), 7 deletions(-)
Title: Minimal OAuth 2.0 Client
Description: A dependency-light OAuth 2.0
<https://www.rfc-editor.org/rfc/rfc6749> client supporting the
client-credentials and authorization-code grants with token refresh.
Built on 'curl' and 'jsonlite', with base R's socket server for the
redirect listener, avoiding heavier HTTP stacks.
Author: Troy Hernandez [aut, cre] ,
cornball.ai [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between tinyoauth versions 0.1.0 dated 2026-06-17 and 0.1.1 dated 2026-06-24
DESCRIPTION | 17 ++----- MD5 | 53 ++++++++++++++--------- NAMESPACE | 2 NEWS.md | 9 ++++ R/anthropic.R |only R/api.R | 82 +++++++++++++++++++------------------ R/authcode.R | 27 ++++-------- R/cache.R | 4 - R/client.R | 1 R/import.R | 1 R/jwt.R | 1 R/openai_codex.R | 14 ------ R/request.R | 76 +++++++++++++++++----------------- R/tinyoauth-package.R | 1 R/token.R | 17 +------ build/partial.rdb |binary inst/tinytest/test_anthropic.R |only man/anthropic_claude_client.Rd |only man/dot-anthropic_authorize_url.Rd |only man/dot-anthropic_exchange.Rd |only man/dot-anthropic_login.Rd |only man/dot-anthropic_nonce.Rd |only man/dot-anthropic_parse_code.Rd |only man/dot-anthropic_pkce.Rd |only man/dot-anthropic_post_json.Rd |only man/dot-anthropic_refresh.Rd |only man/dot-b64url.Rd |only man/oauth_bearer.Rd | 9 +--- man/oauth_cache_path.Rd | 4 - man/oauth_exchange_code.Rd | 6 -- man/oauth_expired.Rd | 8 --- man/oauth_token_anthropic.Rd |only man/openai_codex_account_id.Rd | 11 ---- tests/tinytest.R | 6 -- 34 files changed, 155 insertions(+), 194 deletions(-)
Title: A Fast Algorithm to Factorize High-Dimensional Tensor Product
Matrices
Description: Here we provide tools for the computation and factorization of high-dimensional
tensor products that are formed by smaller matrices. The methods are based on
properties of Kronecker products (Searle 1982, p. 265, ISBN-10: 0470009616).
We evaluated this methodology by benchmark testing and illustrated its use in
Gaussian Linear Models ('Lopez-Cruz et al., 2024') <doi:10.1093/g3journal/jkae001>.
Author: Marco Lopez-Cruz [aut, cre],
Gustavo de los Campos [aut],
Paulino Perez-Rodriguez [aut]
Maintainer: Marco Lopez-Cruz <maraloc@gmail.com>
This is a re-admission after prior archival of version 0.1.4 dated 2024-09-03
Diff between tensorEVD versions 0.1.4 dated 2024-09-03 and 0.1.5 dated 2026-06-24
DESCRIPTION | 11 - MD5 | 64 +++---- NEWS.md | 8 R/Hadamard.R | 2 R/Hadamard_cov.R | 2 R/Kronecker.R | 2 R/Kronecker_cov.R | 2 R/Sum.R | 6 R/rrr_functions.R | 56 ++++-- R/tensorEVD.R | 70 +++++-- R/tensorVec_x.R |only inst/Rmd/hadamard.Rmd | 19 +- inst/Rmd/hadamard.html | 132 +++++++------- inst/Rmd/kronecker.Rmd | 22 +- inst/Rmd/kronecker.html | 138 +++++++-------- inst/Rmd/tensorEVD.Rmd | 37 ++-- inst/Rmd/tensorEVD.html | 231 +++++++++++-------------- inst/doc/tensorEVD-documentation.R | 4 inst/doc/tensorEVD-documentation.Rmd | 6 inst/doc/tensorEVD-documentation.html | 4 man/hadamard.Rd | 14 - man/kronecker.Rd | 13 - man/multivariate_covariance.Rd | 26 +- man/sum.Rd | 8 man/tensorEVD.Rd | 51 +++-- src/Makevars | 1 src/c_hadamard.c | 14 - src/c_sum.c | 8 src/c_tensor_evd.c | 309 +++++++++++++++++++++------------- src/c_tensor_vec_x.c |only src/init.c | 14 - src/tensorEVD.h | 13 + src/utils.c | 158 +++++++++++++++-- vignettes/tensorEVD-documentation.Rmd | 6 34 files changed, 863 insertions(+), 588 deletions(-)
Title: Integrated Retrieval and Analysis of 'PubMed', 'NIH', and 'NLM'
Literature Data
Description: Retrieve and analyze biomedical literature from 'PubMed' and
the wider 'NIH'/'NLM' data stack through a single, PMID-centered
interface. A PubMed search resolves to a set of PMIDs, which can be used
to retrieve article metadata and abstracts, author affiliations,
'iCite' citation data and links, 'PubTator3' entity and relation
annotations, and open-access full text from 'PMC'. A local analysis layer
operates on the retrieved tables, supporting corpus expansion through
citation links, citation network construction, sentence-level entity
co-occurrence, inspection of relation evidence, and 'MeSH' descriptor
keyness.
Author: Jason Timm [aut, cre]
Maintainer: Jason Timm <JaTimm@salud.unm.edu>
Diff between puremoe versions 1.0.4 dated 2026-04-21 and 1.1.0 dated 2026-06-24
puremoe-1.0.4/puremoe/R/data_pmc_list.R |only puremoe-1.0.4/puremoe/R/source_pubtations.R |only puremoe-1.0.4/puremoe/build |only puremoe-1.0.4/puremoe/inst |only puremoe-1.0.4/puremoe/man/data_pmc_list.Rd |only puremoe-1.0.4/puremoe/vignettes |only puremoe-1.1.0/puremoe/DESCRIPTION | 31 ++- puremoe-1.1.0/puremoe/MD5 | 59 +++-- puremoe-1.1.0/puremoe/NAMESPACE | 18 + puremoe-1.1.0/puremoe/NEWS.md | 46 ++++ puremoe-1.1.0/puremoe/R/citation_network.R |only puremoe-1.1.0/puremoe/R/citation_snowball.R |only puremoe-1.1.0/puremoe/R/data_mesh_frequencies.R | 2 puremoe-1.1.0/puremoe/R/endpoint_info.R | 124 +++++++----- puremoe-1.1.0/puremoe/R/get_records.R | 207 ++++++++++++++++++--- puremoe-1.1.0/puremoe/R/globals.R |only puremoe-1.1.0/puremoe/R/mesh_keyness.R |only puremoe-1.1.0/puremoe/R/pubtator_context.R |only puremoe-1.1.0/puremoe/R/pubtator_cooccurrence.R |only puremoe-1.1.0/puremoe/R/pubtator_network.R |only puremoe-1.1.0/puremoe/R/search_pubmed.R | 10 - puremoe-1.1.0/puremoe/R/source_icites.R | 90 ++------- puremoe-1.1.0/puremoe/R/source_pubtator.R |only puremoe-1.1.0/puremoe/R/utils-data-table.R | 8 puremoe-1.1.0/puremoe/README.md | 30 ++- puremoe-1.1.0/puremoe/man/citation_network.Rd |only puremoe-1.1.0/puremoe/man/citation_snowball.Rd |only puremoe-1.1.0/puremoe/man/data_mesh_frequencies.Rd | 2 puremoe-1.1.0/puremoe/man/get_records.Rd | 32 ++- puremoe-1.1.0/puremoe/man/mesh_keyness.Rd |only puremoe-1.1.0/puremoe/man/pubtator_context.Rd |only puremoe-1.1.0/puremoe/man/pubtator_cooccurrence.Rd |only puremoe-1.1.0/puremoe/man/pubtator_network.Rd |only puremoe-1.1.0/puremoe/man/search_pubmed.Rd | 8 puremoe-1.1.0/puremoe/tests/testthat |only puremoe-1.1.0/puremoe/tests/testthat.R |only 36 files changed, 453 insertions(+), 214 deletions(-)
Title: Inferential Methods for Multimodal and Other Networks
Description: A set of tools for testing networks.
It includes functions for univariate and multivariate conditional uniform graph
and quadratic assignment procedure testing, and network regression.
The package is a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Built on the 'manynet' package, all functions operate with matrices,
edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode and two-mode (bipartite) networks.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 1.6.2 dated 2026-04-17 and 1.6.6 dated 2026-06-24
migraph-1.6.2/migraph/R/reexports_classes.R |only migraph-1.6.2/migraph/tests/testthat/test-tutorials_netrics.R |only migraph-1.6.6/migraph/DESCRIPTION | 18 +-- migraph-1.6.6/migraph/MD5 | 46 ++++------ migraph-1.6.6/migraph/NAMESPACE | 2 migraph-1.6.6/migraph/NEWS.md | 38 ++++++++ migraph-1.6.6/migraph/R/class_makes.R | 2 migraph-1.6.6/migraph/R/class_models.R | 2 migraph-1.6.6/migraph/R/migraph-package.R | 2 migraph-1.6.6/migraph/R/model_distrib.R | 11 +- migraph-1.6.6/migraph/R/model_tests.R | 1 migraph-1.6.6/migraph/README.md | 33 ++----- migraph-1.6.6/migraph/build/partial.rdb |binary migraph-1.6.6/migraph/inst/migraph.png |binary migraph-1.6.6/migraph/inst/tutorials/tutorial0/tutorial0.Rmd | 9 + migraph-1.6.6/migraph/inst/tutorials/tutorial8/diversity.Rmd | 2 migraph-1.6.6/migraph/inst/tutorials/tutorial9/ergm.Rmd | 10 +- migraph-1.6.6/migraph/man/migraph-package.Rd | 5 + migraph-1.6.6/migraph/man/reexports.Rd | 7 - migraph-1.6.6/migraph/man/regression.Rd | 2 migraph-1.6.6/migraph/man/test_distributions.Rd | 2 migraph-1.6.6/migraph/man/tests.Rd | 2 migraph-1.6.6/migraph/tests/testthat/Rplots.pdf |binary migraph-1.6.6/migraph/tests/testthat/test-model_distrib.R | 2 migraph-1.6.6/migraph/tests/testthat/test-model_tests.R | 8 - 25 files changed, 119 insertions(+), 85 deletions(-)
Title: Processing Time Series Data Using the Matching Pursuit Algorithm
Description: Provides tools for analysing and decomposing time series data using the Matching Pursuit (MP) algorithm, a greedy signal decomposition technique that represents complex signals as a linear combination of simpler functions (called atoms) selected from a redundant dictionary. Support for the Orthogonal Matching Pursuit (OMP) variant of the classical MP algorithm is also provided. For more details see Mallat and Zhang (1993) <doi:10.1109/78.258082>, Pati et al. (1993) <doi:10.1109/ACSSC.1993.342465>, Elad (2010) <doi:10.1007/978-1-4419-7011-4> and Różański (2024) <doi:10.1145/3674832>.
Author: Artur Gramacki [aut, cre] ,
Jaroslaw Gramacki [ctb] ,
Piotr T. Rożanski [ctb]
Maintainer: Artur Gramacki <a.gramacki@gmail.com>
Diff between MatchingPursuit versions 1.0.1 dated 2026-04-14 and 1.1.0 dated 2026-06-24
MatchingPursuit-1.0.1/MatchingPursuit/R/atom.params.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/check.checksum.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/clear.cache.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/eeg.montage.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/empi.check.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/empi.execute.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/empi.install.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/empi.locate.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/empi2tf.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/filters.coeff.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/gabor.fun.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/read.csv.signals.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/read.edf.params.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/read.edf.signals.R |only MatchingPursuit-1.0.1/MatchingPursuit/R/read.empi.db.file.R |only MatchingPursuit-1.0.1/MatchingPursuit/inst/extdata/EEG.db |only MatchingPursuit-1.0.1/MatchingPursuit/man/atom.params.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/clear.cache.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/eeg.montage.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/empi.check.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/empi.execute.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/empi.install.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/empi.locate.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/empi2tf.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/filters.coeff.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/gabor.fun.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/read.csv.signals.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/read.edf.params.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/read.edf.signals.Rd |only MatchingPursuit-1.0.1/MatchingPursuit/man/read.empi.db.file.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/DESCRIPTION | 10 MatchingPursuit-1.1.0/MatchingPursuit/MD5 | 120 MatchingPursuit-1.1.0/MatchingPursuit/NAMESPACE | 48 MatchingPursuit-1.1.0/MatchingPursuit/NEWS.md | 22 MatchingPursuit-1.1.0/MatchingPursuit/R/atom_params.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/check_checksum.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/clear_cache.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/eeg_montage.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/empi_check.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/empi_execute.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/empi_install.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/empi_locate.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/filters_coeff.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/gabor_fun.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/gabor_proj_fft.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/omp_core.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/omp_execute.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/package.R | 91 MatchingPursuit-1.1.0/MatchingPursuit/R/plot.ecg.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/plot.edf.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/plot.mp.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/read_csv_signals.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/read_dict.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/read_ecg_signals.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/read_edf_params.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/read_edf_signals.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/read_empi_db_file.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/run_omp_pipeline.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/sig2bin.R | 105 MatchingPursuit-1.1.0/MatchingPursuit/R/tf_map.R |only MatchingPursuit-1.1.0/MatchingPursuit/R/topk_atoms.R |only MatchingPursuit-1.1.0/MatchingPursuit/README.md | 31 MatchingPursuit-1.1.0/MatchingPursuit/inst/doc/MatchingPursuit.R | 403 +- MatchingPursuit-1.1.0/MatchingPursuit/inst/doc/MatchingPursuit.Rmd | 1076 +++++-- MatchingPursuit-1.1.0/MatchingPursuit/inst/doc/MatchingPursuit.html | 1434 +++++++--- MatchingPursuit-1.1.0/MatchingPursuit/inst/examples |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/00001_lr.csv |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/00001_lr.dat |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/00001_lr.db |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/00001_lr.hea |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/EEG_bipolar_filtered.bin |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/EEG_bipolar_filtered.csv |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/EEG_bipolar_filtered_dict.xml |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/one_block_dict.xml |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/sample1_dict.xml |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/sample2_dict.xml |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/sample3.csv | 513 +-- MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/sample3.db |binary MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/sample3_dict.xml |only MatchingPursuit-1.1.0/MatchingPursuit/inst/extdata/sample3_dict_EMPI.xml |only MatchingPursuit-1.1.0/MatchingPursuit/man/MatchingPursuit.Rd | 91 MatchingPursuit-1.1.0/MatchingPursuit/man/atom_params.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/clear_cache.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/eeg_montage.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/empi_check.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/empi_execute.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/empi_install.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/empi_locate.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/filters_coeff.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/gabor_fun.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/gabor_proj_fft.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/omp_core.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/omp_execute.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/plot.ecg.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/plot.edf.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/plot.mp.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/read_csv_signals.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/read_dict.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/read_ecg_signals.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/read_edf_params.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/read_edf_signals.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/read_empi_db_file.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/run_omp_pipeline.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/sig2bin.Rd | 55 MatchingPursuit-1.1.0/MatchingPursuit/man/tf_map.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/man/topk_atoms.Rd |only MatchingPursuit-1.1.0/MatchingPursuit/vignettes/MatchingPursuit.Rmd | 1076 +++++-- 107 files changed, 3554 insertions(+), 1521 deletions(-)
More information about MatchingPursuit at CRAN
Permanent link
Title: Many Ways to Make, Manipulate, and Modify Myriad Networks
Description: Many tools for making, manipulating, and modifying many different types of networks.
All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
on directed, multiplex, multimodal, signed, and other networks.
The package includes functions for importing and exporting, creating and generating networks,
modifying networks and node and tie attributes,
and describing networks with sensible defaults.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Christian Steglich [ctb],
Alvaro Uzaheta [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manynet versions 2.1.2 dated 2026-06-21 and 2.1.3 dated 2026-06-24
DESCRIPTION | 6 - MD5 | 12 +- NEWS.md | 17 ++++ R/manip_info.R | 147 +++++++++++++++++++++++++++--------- R/measure_properties.R | 4 man/manip_info.Rd | 32 ++++++- tests/testthat/test-class_stocnet.R | 6 - 7 files changed, 169 insertions(+), 55 deletions(-)
Title: Access the Intergovernmental Organizations ('IGO') Database
Description: Provides tools for searching, extracting and recoding the
Intergovernmental Organizations ('IGO') Database (version 3),
distributed by the Correlates of War Project
<https://correlatesofwar.org/>. Includes 'IGO'-year and country-year
membership data, state system data and functions for deriving
dyad-year joint membership results. For a description of the data, see
Pevehouse, J. C. et al. (2020) <doi:10.1177/0022343319881175>.
Author: Diego Hernangomez [aut, cre, cph] ,
The Correlates of War Project [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between igoR versions 1.0.2 dated 2026-05-23 and 1.0.3 dated 2026-06-24
DESCRIPTION | 24 +- MD5 | 96 +++++------ NAMESPACE | 24 +- NEWS.md | 17 + R/data.R | 195 +++++++++++----------- R/igoR-package.R | 8 R/igo_dyadic.R | 223 ++++++++++++-------------- R/igo_members.R | 96 ++++------- R/igo_recode.R | 34 +-- R/igo_search.R | 72 ++++---- R/igo_search_states.R | 74 +++----- R/igo_state_membership.R | 105 +++++------- R/internals.R |only README.md | 63 ++++--- build/vignette.rds |binary inst/CITATION | 6 inst/COPYRIGHTS | 9 + inst/REFERENCES.bib | 5 inst/WORDLIST | 135 +++++++-------- inst/doc/igoR.R | 14 - inst/doc/igoR.html | 62 +++---- inst/doc/igoR.qmd | 90 +++++----- inst/doc/mapping.html | 88 +++++----- inst/doc/mapping.qmd | 63 +++---- inst/schemaorg.json | 8 man/igoR-package.Rd | 11 + man/igo_dyadic.Rd | 78 +++++---- man/igo_members.Rd | 35 ++-- man/igo_recode.Rd | 23 -- man/igo_search.Rd | 39 ++-- man/igo_search_states.Rd | 21 +- man/igo_state_membership.Rd | 39 ++-- man/igo_year_format3.Rd | 78 ++++----- man/state_year_format3.Rd | 48 ++--- man/states2016.Rd | 41 ++-- tests/testthat/_snaps/igo_dyadic.md | 40 ++-- tests/testthat/_snaps/igo_members.md | 16 - tests/testthat/_snaps/igo_search.md | 2 tests/testthat/_snaps/igo_search_states.md | 6 tests/testthat/_snaps/igo_state_membership.md | 22 +- tests/testthat/test-igo_dyadic.R | 29 +++ tests/testthat/test-igo_recode.R | 18 ++ tests/testthat/test-igo_search.R | 20 ++ tests/testthat/test-igo_search_states.R | 9 + tests/testthat/test-internals.R |only vignettes/REFERENCES.bib | 5 vignettes/fig-AustShared-1.png |binary vignettes/fig-NAShared-1.png |binary vignettes/igoR.qmd | 90 +++++----- vignettes/mapping.qmd | 63 +++---- 50 files changed, 1175 insertions(+), 1069 deletions(-)
Title: Curry, Compose, and Other Higher-Order Functions
Description: Provides a small collection of higher-order functions for
functional-style programming in R, including 'Curry' (partial
application), 'CurryL' (lazy partial application), 'Compose'
(function composition, including a multi-argument variant),
'Identity', 'Negate' and 'Swap'.
Author: Peter Danenberg [aut, cre]
Maintainer: Peter Danenberg <pcd@roxygen.org>
Diff between functional versions 0.6 dated 2014-07-16 and 0.7 dated 2026-06-24
DESCRIPTION | 28 +++++++++++++++++-------- MD5 | 22 +++++++++---------- NAMESPACE | 4 ++- R/functional.R | 47 +++++++++++++++++++++++++++++++++++------- man/Compose.Rd | 8 ++++++- man/Curry.Rd | 8 +++++-- man/CurryL.Rd | 7 +++++- man/Identity.Rd | 3 +- man/Negate.Rd | 3 +- man/Swap.Rd | 3 +- man/multi.argument.Compose.Rd | 3 +- tests/functional.R | 12 ++++++++++ 12 files changed, 113 insertions(+), 35 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-30 1.2.1
2024-03-01 1.2.0
2023-05-09 1.1.0
2022-04-08 1.0.2
2022-03-28 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-24 0.1.2
2024-08-30 0.1.1
2024-08-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-14 0.2.0
2024-05-21 0.1.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-29 0.1.18
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-28 1.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-13 0.3.3
2019-04-12 0.3.1
2018-11-30 0.3
2018-05-18 0.2.7
2018-03-06 0.2.6
2016-10-17 0.2.4
2016-05-25 0.2.3
2016-03-24 0.2.2
2015-08-20 0.2.0
2015-02-11 0.1.7
2014-06-10 0.1.5
Title: A Lightweight Interface Between 'igraph' and 'ggplot2' Graphics
Description: An interface to integrate 'igraph' and 'ggplot2' graphics within
a normalized coordinate system. 'RGraphSpace' extends 'ggplot2' with
graph-aware geometries optimized for large networks. The 'GraphSpace' class
integrates directly with 'ggplot2' through specialized 'geoms' and lazy
resolution of node attributes, supporting customization of aesthetics and
visual styles. These 'geoms' use a dual-anchor normalization approach to
align layers, particularly useful for analyses in which network elements
must be spatially aligned with reference maps and images.
Author: Sysbiolab Team [aut],
Flavio Kessler [ctb],
Jonathan Back [ctb],
Lana Querne [ctb],
Victor Apolonio [ctb],
Vinicius Chagas [ctb],
Mauro Castro [cre]
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Diff between RGraphSpace versions 1.4.0 dated 2026-06-13 and 1.4.1 dated 2026-06-24
RGraphSpace-1.4.0/RGraphSpace/man/annotation_gspace.Rd |only RGraphSpace-1.4.1/RGraphSpace/DESCRIPTION | 6 RGraphSpace-1.4.1/RGraphSpace/MD5 | 63 - RGraphSpace-1.4.1/RGraphSpace/NAMESPACE | 1 RGraphSpace-1.4.1/RGraphSpace/R/annotation-gspace.R | 86 +- RGraphSpace-1.4.1/RGraphSpace/R/geom-edgespace.R | 16 RGraphSpace-1.4.1/RGraphSpace/R/geom-graphspace.R | 5 RGraphSpace-1.4.1/RGraphSpace/R/geom-nodespace.R | 2 RGraphSpace-1.4.1/RGraphSpace/R/gspace-checks.R | 23 RGraphSpace-1.4.1/RGraphSpace/R/gspace-classes.R | 93 ++ RGraphSpace-1.4.1/RGraphSpace/R/gspace-coercion.R | 92 ++ RGraphSpace-1.4.1/RGraphSpace/R/gspace-constructor.R | 28 RGraphSpace-1.4.1/RGraphSpace/R/gspace-features.R | 45 + RGraphSpace-1.4.1/RGraphSpace/R/gspace-generics.R | 7 RGraphSpace-1.4.1/RGraphSpace/R/gspace-ggplot-constructor.R | 40 - RGraphSpace-1.4.1/RGraphSpace/R/gspace-methods.R | 333 +++++----- RGraphSpace-1.4.1/RGraphSpace/R/gspace-misc.R | 40 - RGraphSpace-1.4.1/RGraphSpace/R/gspace-normalize.R | 200 +++--- RGraphSpace-1.4.1/RGraphSpace/R/gspace-supplements.R | 2 RGraphSpace-1.4.1/RGraphSpace/R/gspace-themes.R | 1 RGraphSpace-1.4.1/RGraphSpace/R/gspace-validation.R | 44 - RGraphSpace-1.4.1/RGraphSpace/inst/NEWS.Rd | 6 RGraphSpace-1.4.1/RGraphSpace/inst/doc/RGraphSpace.R | 19 RGraphSpace-1.4.1/RGraphSpace/inst/doc/RGraphSpace.Rmd | 29 RGraphSpace-1.4.1/RGraphSpace/inst/doc/RGraphSpace.html | 41 - RGraphSpace-1.4.1/RGraphSpace/man/GraphSpace-accessors.Rd | 7 RGraphSpace-1.4.1/RGraphSpace/man/RGraphSpace-package.Rd | 20 RGraphSpace-1.4.1/RGraphSpace/man/annotation_gspace_image.Rd |only RGraphSpace-1.4.1/RGraphSpace/man/as_colorraster.Rd | 2 RGraphSpace-1.4.1/RGraphSpace/man/getGraphSpace-methods.Rd | 4 RGraphSpace-1.4.1/RGraphSpace/man/gtoys.Rd | 3 RGraphSpace-1.4.1/RGraphSpace/man/normalizeGraphSpace-methods.Rd | 24 RGraphSpace-1.4.1/RGraphSpace/man/updateGraphSpace.Rd |only RGraphSpace-1.4.1/RGraphSpace/vignettes/RGraphSpace.Rmd | 29 34 files changed, 819 insertions(+), 492 deletions(-)
Title: Read Markdown Tables into Tibbles
Description: Efficient reading of raw markdown tables into tibbles. Designed to
accept content from strings, files, and URLs with the ability to extract
and read multiple tables from markdown for analysis.
Author: Jordan Bradford [aut, cre, cph]
Maintainer: Jordan Bradford <jrdnbradford@gmail.com>
Diff between readMDTable versions 0.3.3 dated 2026-05-31 and 0.4.0 dated 2026-06-24
readMDTable-0.3.3/readMDTable/man/extract_md_tables.Rd |only readMDTable-0.4.0/readMDTable/DESCRIPTION | 14 - readMDTable-0.4.0/readMDTable/MD5 | 35 +-- readMDTable-0.4.0/readMDTable/NEWS.md | 4 readMDTable-0.4.0/readMDTable/R/extract_md_tables.R | 105 ---------- readMDTable-0.4.0/readMDTable/R/read_md_table.R | 90 ++++++-- readMDTable-0.4.0/readMDTable/R/source_file.R | 1 readMDTable-0.4.0/readMDTable/README.md | 32 +-- readMDTable-0.4.0/readMDTable/inst/doc/rvest-benchmarks.R | 12 - readMDTable-0.4.0/readMDTable/inst/doc/rvest-benchmarks.Rmd | 12 - readMDTable-0.4.0/readMDTable/inst/doc/rvest-benchmarks.html | 26 +- readMDTable-0.4.0/readMDTable/man/read_md_table.Rd | 42 ++-- readMDTable-0.4.0/readMDTable/tests/testthat/test-extract_md_tables.R | 58 ++++- readMDTable-0.4.0/readMDTable/tests/testthat/test-read_md_table.R | 38 ++- readMDTable-0.4.0/readMDTable/vignettes/img/benchmark-1.png |binary readMDTable-0.4.0/readMDTable/vignettes/img/benchmark-2.png |binary readMDTable-0.4.0/readMDTable/vignettes/img/benchmark-3.png |binary readMDTable-0.4.0/readMDTable/vignettes/img/benchmark-4.png |binary readMDTable-0.4.0/readMDTable/vignettes/rvest-benchmarks.Rmd | 12 - 19 files changed, 237 insertions(+), 244 deletions(-)
Title: An Implementation of the PREVENT and Pooled Cohort Equations
Description: Implements the American Heart Association Predicting
Risk of cardiovascular disease EVENTs (PREVENT) equations from Khan
SS, Matsushita K, Sang Y, and colleagues (2023)
<doi:10.1161/CIRCULATIONAHA.123.067626>, with optional comparison
with their de facto predecessor, the Pooled Cohort Equations from the
American Heart Association and American College of Cardiology (2013)
<doi:10.1161/01.cir.0000437741.48606.98> and the revision to the Pooled
Cohort Equations from Yadlowsky and colleagues (2018)
<doi:10.7326/M17-3011>.
Author: Martin Mayer [aut, cre, cph]
Maintainer: Martin Mayer <mmayer@ebsco.com>
Diff between preventr versions 0.11.0 dated 2025-01-26 and 0.12.0 dated 2026-06-24
preventr-0.11.0/preventr/R/prevent_equations.R |only preventr-0.11.0/preventr/tests/testthat/_snaps/prevent_equations.md |only preventr-0.11.0/preventr/tests/testthat/test-prevent_equations.R |only preventr-0.12.0/preventr/DESCRIPTION | 20 preventr-0.12.0/preventr/MD5 | 329 preventr-0.12.0/preventr/NAMESPACE | 20 preventr-0.12.0/preventr/NEWS.md | 29 preventr-0.12.0/preventr/R/estimate_risk.R |only preventr-0.12.0/preventr/R/globals.R | 10 preventr-0.12.0/preventr/R/helpers.R | 47 preventr-0.12.0/preventr/R/helpers_plot.R |only preventr-0.12.0/preventr/R/helpers_test.R | 76 preventr-0.12.0/preventr/R/plot_risk.R |only preventr-0.12.0/preventr/R/prep_data_for_use.R | 8 preventr-0.12.0/preventr/R/sysdata.rda |binary preventr-0.12.0/preventr/README.md | 74 preventr-0.12.0/preventr/build/vignette.rds |binary preventr-0.12.0/preventr/inst/doc/plot-risk.R |only preventr-0.12.0/preventr/inst/doc/plot-risk.Rmd |only preventr-0.12.0/preventr/inst/doc/plot-risk.html |only preventr-0.12.0/preventr/inst/doc/using-data-frame.R | 5 preventr-0.12.0/preventr/inst/doc/using-data-frame.Rmd | 5 preventr-0.12.0/preventr/inst/doc/using-data-frame.html | 3778 ++++------ preventr-0.12.0/preventr/man/app.Rd | 2 preventr-0.12.0/preventr/man/estimate_risk.Rd | 83 preventr-0.12.0/preventr/man/figures/README-risk-1.png |only preventr-0.12.0/preventr/man/figures/README-risk-2.png |only preventr-0.12.0/preventr/man/plot_risk.Rd |only preventr-0.12.0/preventr/tests/testthat/_data |only preventr-0.12.0/preventr/tests/testthat/_snaps/estimate_risk.md |only preventr-0.12.0/preventr/tests/testthat/_snaps/plot_risk |only preventr-0.12.0/preventr/tests/testthat/test-estimate_risk.R |only preventr-0.12.0/preventr/tests/testthat/test-plot_risk.R |only preventr-0.12.0/preventr/vignettes/plot-risk.Rmd |only preventr-0.12.0/preventr/vignettes/using-data-frame.Rmd | 5 35 files changed, 2463 insertions(+), 2028 deletions(-)
Title: Detect and Characterize Sub-Daily Flow Fluctuations
Description: An important environmental impact on running water ecosystems
is caused by hydropeaking - the discontinuous release of turbine water
because of peaks of energy demand. An event-based algorithm is implemented
to detect flow fluctuations referring to increase events (IC) and decrease
events (DC). For each event, a set of parameters related to the fluctuation
intensity is calculated. The framework is introduced in Greimel et al. (2016)
"A method to detect and characterize sub-daily flow fluctuations"
<doi:10.1002/hyp.10773> and can be used to identify different fluctuation
types according to the potential source: e.g., sub-daily flow fluctuations
caused by hydropeaking, rainfall, or snow and glacier melt.
This is a companion to the package 'hydroroute', which is used to detect and
follow hydropower plant-specific hydropeaking waves at the sub-catchment
scale and to describe how hydropeaking flow parameters change along the
longitudinal flow path as proposed and validated in Greimel [...truncated...]
Author: Bettina Gruen [cre, ctb] ,
Julia Haider [aut],
Benjamin Altmann [ctb] ,
Franz Greimel [ctb]
Maintainer: Bettina Gruen <Bettina.Gruen@R-project.org>
Diff between hydropeak versions 0.1.2 dated 2022-11-15 and 0.1.3 dated 2026-06-24
DESCRIPTION | 20 +- MD5 | 30 +-- NAMESPACE | 8 R/events.R | 56 ++--- R/metrics.R | 251 ++++++++++++++++++++++++- build/vignette.rds |binary inst/CITATION | 14 - inst/NEWS.Rd | 18 + inst/doc/hydropeak-intro.R | 2 inst/doc/hydropeak-intro.html | 420 ++++++++++++++++++++++++------------------ man/durmid.Rd |only man/flow.Rd | 14 - man/maxfr.Rd |only man/mefr1.Rd |only man/mefr2.Rd |only man/minfr.Rd |only man/qfrom.Rd |only man/qmid.Rd |only man/qto.Rd |only tests/testthat/test-events.R | 50 +++-- 20 files changed, 621 insertions(+), 262 deletions(-)
Title: Simulated Point-Pattern via Vectorized Parameterization
Description: An intuitive interface to simulate superimposed (marked) point patterns with vectorized parameterization of random point pattern and distribution of marks. The author has retired from academic research. Accordingly, this package should not be considered a validated tool for use in peer-reviewed publications or as the basis for grant applications.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between groupedHyperframe.random versions 0.3.1 dated 2026-06-02 and 0.3.2 dated 2026-06-24
DESCRIPTION | 10 +++++----- MD5 | 5 +++-- R/0PACKAGE.R | 23 +++++++++++++++++++++-- man/groupedHyperframe.random-package.Rd |only 4 files changed, 29 insertions(+), 9 deletions(-)
More information about groupedHyperframe.random at CRAN
Permanent link
Title: Dot-and-Whisker Plots of Regression Results
Description: Create quick and easy dot-and-whisker plots of regression results. It takes as input either (1) a coefficient table in standard form or (2) one (or a list of) fitted model objects (of any type that has methods implemented in the 'parameters' package). It returns 'ggplot' objects that can be further customized using tools from the 'ggplot2' package. The package also includes helper functions for tasks such as rescaling coefficients or relabeling predictor variables. See more methodological discussion of the visualization and data management methods used in this package in Kastellec and Leoni (2007) <doi:10.1017/S1537592707072209> and Gelman (2008) <doi:10.1002/sim.3107>.
Author: Frederick Solt [aut],
Yue Hu [aut, cre],
Ben Bolker [ctb],
Os Keyes [ctb],
Stefan Mueller [ctb],
Thomas Leeper [ctb],
Chris Wallace [ctb],
Christopher Warshaw [ctb]
Maintainer: Yue Hu <yuehu@tsinghua.edu.cn>
Diff between dotwhisker versions 0.8.4 dated 2025-05-06 and 0.8.6 dated 2026-06-24
DESCRIPTION | 14 MD5 | 28 - NAMESPACE | 3 NEWS.md | 26 R/add_brackets.R | 67 -- R/dwplot.R | 1057 +++++++++++++++++--------------------- R/relabel_predictors.R | 6 R/secret_weapon.R | 8 R/small_multiple.R | 40 - build/vignette.rds |binary inst/doc/dotwhisker-vignette.html | 47 - inst/doc/kl2007_examples.html | 14 man/dwplot.Rd | 14 man/small_multiple.Rd | 14 tests |only 15 files changed, 636 insertions(+), 702 deletions(-)