Title: Dynamic Relational Event Analysis and Modeling
Description: A set of tools for relational and event analysis, including two- and one-mode network brokerage and structural measures, and helper functions optimized for relational event analysis with large datasets, including creating relational risk sets, computing network statistics, estimating relational event models, and simulating relational event sequences. For more information on relational event models, see Butts (2008) <doi:10.1111/j.1467-9531.2008.00203.x>, Lerner and Lomi (2020) <doi:10.1017/nws.2019.57>, Bianchi et al. (2024) <doi:10.1146/annurev-statistics-040722-060248>, and Butts et al. (2023) <doi:10.1017/nws.2023.9>. In terms of the structural measures in this package, see Leal (2025) <doi:10.1177/00491241251322517>, Burchard and Cornwell (2018) <doi:10.1016/j.socnet.2018.04.001>, and Fujimoto et al. (2018) <doi:10.1017/nws.2018.11>. This package was developed with support from the National Science Foundation’s (NSF) Human Networks and Data [...truncated...]
Author: Kevin A. Carson [aut, cre] ,
Diego F. Leal [aut]
Maintainer: Kevin A. Carson <kacarson@arizona.edu>
Diff between dream versions 2.1.3 dated 2026-06-10 and 2.1.4 dated 2026-06-28
DESCRIPTION | 6 ++--- MD5 | 16 ++++++------- NEWS.md | 21 +++++++++++++++-- R/dream_estimate.R | 56 ++++++++++++++++++++++++++++++++++++----------- R/dream_process.R | 39 ++++++++++++++++++++------------ R/dream_simulate.R | 2 - README.md | 9 ++++--- man/plot.dream_rem.Rd | 3 +- man/predict.dream_rem.Rd | 20 +++++++++++++++- 9 files changed, 126 insertions(+), 46 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), this package implements
features like bootstrapping or simulating of parameters and models,
feature reduction (feature extraction and variable selection) as well
as functions to describe data and variable characteristics (e.g.
skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Soeren Hoejsgaard [aut],
Brenton M. Wiernik [aut] ,
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] ,
Jeffrey Girard [ctb] ,
Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between parameters versions 0.29.1 dated 2026-05-24 and 0.29.2 dated 2026-06-28
DESCRIPTION | 10 MD5 | 67 +- NAMESPACE | 5 NEWS.md | 31 R/4_standard_error.R | 4 R/5_simulate_model.R | 51 + R/equivalence_test.R | 332 ++++++---- R/factor_analysis.R | 57 + R/format.R | 25 R/format_parameters.R | 82 +- R/methods_nestedLogit.R | 4 R/methods_plm.R | 4 R/methods_survival.R | 2 R/print_html.R | 194 +++--- R/print_md.R | 177 +++-- R/utils_format.R | 789 ++++++++++++++++--------- R/utils_model_parameters.R | 8 R/utils_pca_efa.R | 138 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 1 man/principal_components.Rd | 4 tests/testthat/test-betareg.R | 46 - tests/testthat/test-coxph.R | 25 tests/testthat/test-discovr_book.R | 61 + tests/testthat/test-equivalence_test.R | 31 tests/testthat/test-factor_analysis.R | 19 tests/testthat/test-lavaan.R | 42 + tests/testthat/test-model_parameters.fixest.R | 1 tests/testthat/test-model_parameters_labels.R | 50 + tests/testthat/test-parameters-labels.R |only tests/testthat/test-pca.R | 15 tests/testthat/test-printing_reference_level.R | 86 +- tests/testthat/test-robust.R | 23 tests/testthat/test-standardize_parameters.R | 2 35 files changed, 1594 insertions(+), 792 deletions(-)
Title: Extract, Format, and Print Statistical Output
Description: Provides functions that format statistical output in a way that
can be inserted into R Markdown documents. This is analogous to the
apa_print() functions in the 'papaja' package but prints Markdown
or LaTeX syntax.
Author: Jeffrey R. Stevens [aut, cre, cph]
Maintainer: Jeffrey R. Stevens <jeffrey.r.stevens@protonmail.com>
Diff between cocoon versions 0.3.0 dated 2026-02-07 and 0.3.1 dated 2026-06-28
DESCRIPTION | 8 +++--- MD5 | 40 +++++++++++++++---------------- NEWS.md | 4 +++ README.md | 4 +-- build/vignette.rds |binary inst/CITATION | 4 +-- man/cocoon-package.Rd | 5 +++ man/format_bf.Rd | 24 +++++++++--------- man/format_chisq.Rd | 24 +++++++++--------- man/format_corr.Rd | 24 +++++++++--------- man/format_stats.BFBayesFactor.Rd | 24 +++++++++--------- man/format_stats.Rd | 24 +++++++++--------- man/format_stats.aov.Rd | 24 +++++++++--------- man/format_stats.easycorrelation.Rd | 24 +++++++++--------- man/format_stats.htest.Rd | 24 +++++++++--------- man/format_stats.lm.Rd | 24 +++++++++--------- man/format_stats.lmerModLmerTest.Rd | 24 +++++++++--------- man/format_stats.merMod.Rd | 24 +++++++++--------- man/format_ttest.Rd | 24 +++++++++--------- tests/testthat/helper.R | 6 ++-- tests/testthat/test-format_stats_htest.R | 6 ++-- 21 files changed, 187 insertions(+), 178 deletions(-)
Title: Runs Allelematch Regression Tests
Description: Automates regression testing of package 'allelematch'. Over
2500 tests cover all functions in 'allelematch', reproduce the
examples from the documentation, and include negative tests. The
implementation is based on 'testthat'.
Author: Department of Wildlife, Fish and Environmental Studies at Swedish
University of Agricultural Sciences [cph],
Goeran Spong [cph] ,
Paul Galpern [ctb] ,
Torvald Staxler [aut, cre]
Maintainer: Torvald Staxler <torvald.staxler@telia.com>
Diff between amregtest versions 1.0.5 dated 2025-09-02 and 1.0.10 dated 2026-06-28
DESCRIPTION | 31 +-- MD5 | 55 +++-- NAMESPACE | 1 NEWS.md | 13 + R/ColumnReporter.R |only R/amregtest-package.R | 11 - R/art_api.R | 30 ++- R/art_data.R | 16 - README.md | 154 ++++++++++++---- man/amregtest-package.Rd | 15 + man/amregtest.Rd | 8 man/artRun.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/allelematch_4-amCluster.md | 36 +-- tests/testthat/_snaps/allelematch_6-amUnique.md | 108 ++++++++--- tests/testthat/helper-temp-leaks.R |only tests/testthat/setup-temp-leaks.R |only tests/testthat/tdd-allelematch_2-amMatrix_negative.R | 18 - tests/testthat/tdd-allelematch_3-amPairwise_negative.R | 26 +- tests/testthat/test-allelematch_1-amDataset_negative.R | 30 +-- tests/testthat/test-allelematch_2-amMatrix_negative.R | 30 +-- tests/testthat/test-allelematch_3-amPairwise_negative.R | 28 +- tests/testthat/test-allelematch_4-amCluster.R | 29 +-- tests/testthat/test-allelematch_6-amUnique.R | 49 ++--- tests/testthat/test-allelematch_6-amUnique_negative.R | 24 +- tests/testthat/test-allelematch_7-amUniqueProfile.R | 2 tests/testthat/test-amExample1.R | 4 tests/testthat/test-amExample2.R | 6 tests/testthat/test-amExample3.R | 2 tests/testthat/test-amExample4.R | 6 30 files changed, 465 insertions(+), 269 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.5.4 dated 2026-06-19 and 1.5.4.1 dated 2026-06-28
duckdb-1.5.4.1/duckdb/DESCRIPTION | 6 duckdb-1.5.4.1/duckdb/MD5 | 70 +- duckdb-1.5.4.1/duckdb/NAMESPACE | 5 duckdb-1.5.4.1/duckdb/NEWS.md | 17 duckdb-1.5.4.1/duckdb/R/Driver.R | 27 duckdb-1.5.4.1/duckdb/R/cran-guard.R | 2 duckdb-1.5.4.1/duckdb/R/csv.R | 83 ++ duckdb-1.5.4.1/duckdb/R/dbConnect__duckdb_driver.R | 2 duckdb-1.5.4.1/duckdb/R/dbDataType__duckdb_driver.R | 2 duckdb-1.5.4.1/duckdb/R/extensions.R | 293 ---------- duckdb-1.5.4.1/duckdb/R/package.R | 3 duckdb-1.5.4.1/duckdb/R/rlang.R |only duckdb-1.5.4.1/duckdb/R/sql.R | 2 duckdb-1.5.4.1/duckdb/R/storage-config.R |only duckdb-1.5.4.1/duckdb/R/storage-locations.R |only duckdb-1.5.4.1/duckdb/R/storage.R |only duckdb-1.5.4.1/duckdb/R/zzz.R | 8 duckdb-1.5.4.1/duckdb/configure | 125 ++++ duckdb-1.5.4.1/duckdb/man/duckdb.Rd | 2 duckdb-1.5.4.1/duckdb/man/duckdb_read_csv.Rd | 2 duckdb-1.5.4.1/duckdb/man/duckdb_storage.Rd |only duckdb-1.5.4.1/duckdb/man/duckdb_storage_config.Rd |only duckdb-1.5.4.1/duckdb/src/Makevars | 11 duckdb-1.5.4.1/duckdb/src/Makevars.system-lib |only duckdb-1.5.4.1/duckdb/src/duckdb.tar.xz |binary duckdb-1.5.4.1/duckdb/src/scan.cpp | 4 duckdb-1.5.4.1/duckdb/tests/testthat.R | 2 duckdb-1.5.4.1/duckdb/tests/testthat/_snaps/storage-config.md |only duckdb-1.5.4.1/duckdb/tests/testthat/helper-DBItest.R | 2 duckdb-1.5.4.1/duckdb/tests/testthat/test-extension_path.R | 6 duckdb-1.5.4.1/duckdb/tests/testthat/test-map.R | 8 duckdb-1.5.4.1/duckdb/tests/testthat/test-progress_display.R | 12 duckdb-1.5.4.1/duckdb/tests/testthat/test-readonly.R | 21 duckdb-1.5.4.1/duckdb/tests/testthat/test-secret_directory.R | 276 +-------- duckdb-1.5.4.1/duckdb/tests/testthat/test-shutdown.R | 19 duckdb-1.5.4.1/duckdb/tests/testthat/test-signal.R | 7 duckdb-1.5.4.1/duckdb/tests/testthat/test-storage-config.R |only duckdb-1.5.4.1/duckdb/tests/testthat/test-storage-e2e.R |only duckdb-1.5.4.1/duckdb/tests/testthat/test-storage-markers.R |only duckdb-1.5.4.1/duckdb/tests/testthat/test-storage-resolve.R |only duckdb-1.5.4.1/duckdb/tests/testthat/test-storage-seams.R |only duckdb-1.5.4/duckdb/R/is_interactive.R |only duckdb-1.5.4/duckdb/man/duckdb_consolidate_secrets.Rd |only duckdb-1.5.4/duckdb/tests/testthat/_snaps/secret_directory.md |only 44 files changed, 393 insertions(+), 624 deletions(-)
Title: Save Output of Statistical Tests
Description: Save the output of statistical tests in an organized file that can
be shared with others or used to report statistics in scientific papers.
Author: Willem Sleegers [aut, cre]
Maintainer: Willem Sleegers <w.sleegers@me.com>
Diff between tidystats versions 0.7.0 dated 2026-03-08 and 0.7.1 dated 2026-06-28
DESCRIPTION | 8 MD5 | 32 +- NEWS.md | 7 build/partial.rdb |binary build/vignette.rds |binary inst/doc/converting-statistics-to-a-data-frame.html | 4 inst/doc/custom-statistics.html | 4 inst/doc/introduction-to-tidystats.html | 4 tests/testthat/test_BayesFactor.R | 147 +++++++----- tests/testthat/test_Hmisc.R | 61 +---- tests/testthat/test_afex.R | 40 ++- tests/testthat/test_effectsize.R | 86 ++++--- tests/testthat/test_effsize.R | 24 + tests/testthat/test_emmeans.r | 243 ++++++++++---------- tests/testthat/test_irr.R | 33 +- tests/testthat/test_lme4.R | 60 +++- tests/testthat/test_lmerTest.R | 115 ++++----- 17 files changed, 469 insertions(+), 399 deletions(-)
Title: A Common API to Clustering
Description: A common interface to specifying clustering models, in the
same style as 'parsnip'. Creates unified interface across different
functions and computational engines.
Author: Emil Hvitfeldt [aut, cre] ,
Kelly Bodwin [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between tidyclust versions 0.3.1 dated 2026-06-20 and 0.3.2 dated 2026-06-28
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/k_means.R | 2 +- tests/testthat/test-k_means.R | 14 ++++++++++++++ 5 files changed, 28 insertions(+), 8 deletions(-)
Title: Scraper for National Hockey League Data
Description: Scrapes and cleans data from the 'NHL' and 'ESPN' APIs into data.frames and lists. Wraps 125+ endpoints documented in <https://github.com/RentoSaijo/nhlscraper/wiki> from high-level multi-season summaries and award winners to low-level decisecond replays and bookmakers' odds, making them more accessible. Features cleaning and visualization tools, primarily for play-by-plays.
Author: Rento Saijo [aut, cre, cph] ,
Lars Skytte [ctb],
Jack Pallotta [ctb]
Maintainer: Rento Saijo <rentosaijo0527@gmail.com>
Diff between nhlscraper versions 0.6.1 dated 2026-05-24 and 0.7.0 dated 2026-06-28
nhlscraper-0.6.1/nhlscraper/R/xg_ridge_specs.R |only nhlscraper-0.6.1/nhlscraper/man/dot_to_camel.Rd |only nhlscraper-0.6.1/nhlscraper/man/draw_rink_arc.Rd |only nhlscraper-0.6.1/nhlscraper/man/draw_rink_circle.Rd |only nhlscraper-0.6.1/nhlscraper/man/espn_api.Rd |only nhlscraper-0.6.1/nhlscraper/man/nhl_api.Rd |only nhlscraper-0.6.1/nhlscraper/man/normalize_locale_names.Rd |only nhlscraper-0.6.1/nhlscraper/man/normalize_team_abbrev_cols.Rd |only nhlscraper-0.6.1/nhlscraper/man/normalize_team_key.Rd |only nhlscraper-0.6.1/nhlscraper/man/scope_person_name_cols.Rd |only nhlscraper-0.6.1/nhlscraper/man/to_game_type_id.Rd |only nhlscraper-0.6.1/nhlscraper/man/to_team_id.Rd |only nhlscraper-0.6.1/nhlscraper/man/to_team_tri_code.Rd |only nhlscraper-0.6.1/nhlscraper/tests/testthat/test-xg-ridge-model.R |only nhlscraper-0.7.0/nhlscraper/DESCRIPTION | 14 nhlscraper-0.7.0/nhlscraper/MD5 | 856 +++--- nhlscraper-0.7.0/nhlscraper/NAMESPACE | 1 nhlscraper-0.7.0/nhlscraper/NEWS.md | 16 nhlscraper-0.7.0/nhlscraper/R/Award.R | 14 nhlscraper-0.7.0/nhlscraper/R/AwardOld.R | 4 nhlscraper-0.7.0/nhlscraper/R/Clean.R | 660 ++++- nhlscraper-0.7.0/nhlscraper/R/Coach.R | 26 nhlscraper-0.7.0/nhlscraper/R/Draft.R | 67 nhlscraper-0.7.0/nhlscraper/R/DraftOld.R | 6 nhlscraper-0.7.0/nhlscraper/R/ESPNCoachOld.R | 5 nhlscraper-0.7.0/nhlscraper/R/ESPNGame.R | 34 nhlscraper-0.7.0/nhlscraper/R/ESPNGameOld.R | 8 nhlscraper-0.7.0/nhlscraper/R/ESPNOther.R | 24 nhlscraper-0.7.0/nhlscraper/R/ESPNOtherOld.R | 5 nhlscraper-0.7.0/nhlscraper/R/ESPNPlayer.R | 15 nhlscraper-0.7.0/nhlscraper/R/ESPNPlayerOld.R | 6 nhlscraper-0.7.0/nhlscraper/R/ESPNTeam.R | 14 nhlscraper-0.7.0/nhlscraper/R/ESPNTeamOld.R | 4 nhlscraper-0.7.0/nhlscraper/R/Event.R | 17 nhlscraper-0.7.0/nhlscraper/R/EventOld.R | 3 nhlscraper-0.7.0/nhlscraper/R/Franchise.R | 53 nhlscraper-0.7.0/nhlscraper/R/FranchiseOld.R | 6 nhlscraper-0.7.0/nhlscraper/R/Game.R | 637 ++-- nhlscraper-0.7.0/nhlscraper/R/GameOld.R | 19 nhlscraper-0.7.0/nhlscraper/R/Goalie.R | 117 nhlscraper-0.7.0/nhlscraper/R/GoalieEDGE.R | 65 nhlscraper-0.7.0/nhlscraper/R/GoalieOld.R | 6 nhlscraper-0.7.0/nhlscraper/R/Graph.R | 31 nhlscraper-0.7.0/nhlscraper/R/League.R | 52 nhlscraper-0.7.0/nhlscraper/R/LeagueOld.R | 9 nhlscraper-0.7.0/nhlscraper/R/Load.R | 231 - nhlscraper-0.7.0/nhlscraper/R/Manager.R | 9 nhlscraper-0.7.0/nhlscraper/R/Model.R | 1307 +++++++--- nhlscraper-0.7.0/nhlscraper/R/Official.R | 8 nhlscraper-0.7.0/nhlscraper/R/OfficialOld.R | 3 nhlscraper-0.7.0/nhlscraper/R/Other.R | 37 nhlscraper-0.7.0/nhlscraper/R/OtherOld.R | 8 nhlscraper-0.7.0/nhlscraper/R/Player.R | 44 nhlscraper-0.7.0/nhlscraper/R/PlayerOld.R | 6 nhlscraper-0.7.0/nhlscraper/R/Playoff.R | 37 nhlscraper-0.7.0/nhlscraper/R/PlayoffOld.R | 5 nhlscraper-0.7.0/nhlscraper/R/Share.R | 1231 ++++----- nhlscraper-0.7.0/nhlscraper/R/Skater.R | 96 nhlscraper-0.7.0/nhlscraper/R/SkaterEDGE.R | 74 nhlscraper-0.7.0/nhlscraper/R/SkaterOld.R | 6 nhlscraper-0.7.0/nhlscraper/R/Team.R | 197 - nhlscraper-0.7.0/nhlscraper/R/TeamEDGE.R | 171 - nhlscraper-0.7.0/nhlscraper/R/TeamOld.R | 10 nhlscraper-0.7.0/nhlscraper/R/Utility.R | 163 - nhlscraper-0.7.0/nhlscraper/R/nhlscraper-package.R | 9 nhlscraper-0.7.0/nhlscraper/R/sysdata.rda |binary nhlscraper-0.7.0/nhlscraper/README.md | 8 nhlscraper-0.7.0/nhlscraper/build/vignette.rds |binary nhlscraper-0.7.0/nhlscraper/inst/doc/back-to-back-tax.R | 281 +- nhlscraper-0.7.0/nhlscraper/inst/doc/back-to-back-tax.Rmd | 358 +- nhlscraper-0.7.0/nhlscraper/inst/doc/back-to-back-tax.html | 844 +++--- nhlscraper-0.7.0/nhlscraper/inst/doc/draft-size-bias.R | 195 - nhlscraper-0.7.0/nhlscraper/inst/doc/draft-size-bias.Rmd | 293 +- nhlscraper-0.7.0/nhlscraper/inst/doc/draft-size-bias.html | 795 +++--- nhlscraper-0.7.0/nhlscraper/inst/doc/expected-goals-model.R | 272 +- nhlscraper-0.7.0/nhlscraper/inst/doc/expected-goals-model.Rmd | 467 ++- nhlscraper-0.7.0/nhlscraper/inst/doc/expected-goals-model.html | 777 ++--- nhlscraper-0.7.0/nhlscraper/inst/doc/game-7-shot-quality.R | 206 + nhlscraper-0.7.0/nhlscraper/inst/doc/game-7-shot-quality.Rmd | 287 +- nhlscraper-0.7.0/nhlscraper/inst/doc/game-7-shot-quality.html | 791 +++--- nhlscraper-0.7.0/nhlscraper/inst/doc/play-by-play-pipeline.R | 179 + nhlscraper-0.7.0/nhlscraper/inst/doc/play-by-play-pipeline.Rmd | 394 +-- nhlscraper-0.7.0/nhlscraper/inst/doc/play-by-play-pipeline.html | 520 ++- nhlscraper-0.7.0/nhlscraper/inst/doc/playoff-size.R | 122 nhlscraper-0.7.0/nhlscraper/inst/doc/playoff-size.Rmd | 205 + nhlscraper-0.7.0/nhlscraper/inst/doc/playoff-size.html | 902 +++--- nhlscraper-0.7.0/nhlscraper/inst/doc/team-edge-archetypes.R | 221 - nhlscraper-0.7.0/nhlscraper/inst/doc/team-edge-archetypes.Rmd | 304 +- nhlscraper-0.7.0/nhlscraper/inst/doc/team-edge-archetypes.html | 704 ++--- nhlscraper-0.7.0/nhlscraper/inst/extdata |only nhlscraper-0.7.0/nhlscraper/man/attendance.Rd | 2 nhlscraper-0.7.0/nhlscraper/man/award_winners.Rd | 3 nhlscraper-0.7.0/nhlscraper/man/awards.Rd | 3 nhlscraper-0.7.0/nhlscraper/man/boxscore.Rd | 4 nhlscraper-0.7.0/nhlscraper/man/bracket.Rd | 3 nhlscraper-0.7.0/nhlscraper/man/calculate_expected_goals.Rd | 15 nhlscraper-0.7.0/nhlscraper/man/calculate_shift_times_by_situation.Rd |only nhlscraper-0.7.0/nhlscraper/man/coach_career_statistics.Rd | 3 nhlscraper-0.7.0/nhlscraper/man/coach_franchise_statistics.Rd | 3 nhlscraper-0.7.0/nhlscraper/man/coaches.Rd | 3 nhlscraper-0.7.0/nhlscraper/man/combine_reports.Rd | 3 nhlscraper-0.7.0/nhlscraper/man/contracts.Rd | 5 nhlscraper-0.7.0/nhlscraper/man/countries.Rd | 3 nhlscraper-0.7.0/nhlscraper/man/dot-api_request.Rd |only nhlscraper-0.7.0/nhlscraper/man/dot-calculate_shift_times_by_situation_data.Rd |only nhlscraper-0.7.0/nhlscraper/man/dot-clean_public_pbp_plays.Rd |only nhlscraper-0.7.0/nhlscraper/man/dot-coerce_team_id.Rd |only nhlscraper-0.7.0/nhlscraper/man/dot-coerce_team_tri_code.Rd |only nhlscraper-0.7.0/nhlscraper/man/dot-dot_to_camel.Rd 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3 nhlscraper-0.7.0/nhlscraper/man/team_week_schedule.Rd | 4 nhlscraper-0.7.0/nhlscraper/man/teams.Rd | 3 nhlscraper-0.7.0/nhlscraper/man/tv_schedule.Rd | 3 nhlscraper-0.7.0/nhlscraper/man/venues.Rd | 3 nhlscraper-0.7.0/nhlscraper/man/wsc_play_by_plays.Rd | 4 nhlscraper-0.7.0/nhlscraper/man/wsc_play_by_plays_raw.Rd | 5 nhlscraper-0.7.0/nhlscraper/man/wsc_summary.Rd | 4 nhlscraper-0.7.0/nhlscraper/man/x_game_cumulative_expected_goals.Rd | 15 nhlscraper-0.7.0/nhlscraper/man/x_game_shot_locations.Rd | 14 nhlscraper-0.7.0/nhlscraper/src/init.c | 32 nhlscraper-0.7.0/nhlscraper/src/on_ice_shift_timings.c | 53 nhlscraper-0.7.0/nhlscraper/src/pbp_deltas.c | 6 nhlscraper-0.7.0/nhlscraper/src/pbp_shot_context.c | 8 nhlscraper-0.7.0/nhlscraper/src/shift_situation_overlaps.c |only nhlscraper-0.7.0/nhlscraper/tests/testthat.R | 6 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-add_deltas.R | 177 - nhlscraper-0.7.0/nhlscraper/tests/testthat/test-attendance.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-award_winners.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-awards.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-biometrics.R | 93 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-boxscore.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-bracket.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-coach_career_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-coach_career_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-coach_franchise_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-coach_franchise_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-coaches.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-combine_reports.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-contracts.R | 60 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-countries.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-draft_picks.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-draft_rankings.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-draft_tracker.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-drafts.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_futures.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_game_odds.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_game_summary.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_games.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_injuries.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_pbp.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_play_by_play.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_player_summary.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_players.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_team_summary.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_teams.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-espn_transactions.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-expansion_draft_picks.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-expansion_drafts.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-franchise_playoff_situational_results.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-franchise_season_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-franchise_season_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-franchise_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-franchise_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-franchise_team_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-franchise_team_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-franchise_versus_franchise.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-franchise_vs_franchise.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-franchises.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-game_odds.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-game_rosters.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-games.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-gc_pbp.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-gc_play_by_play.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-gc_summary.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-general_managers.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-glossary.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-gms.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_edge_5_vs_5.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_edge_five_versus_five.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_edge_leaders.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_edge_save_percentage.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_edge_seasons.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_edge_shot_location.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_edge_summary.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_game_report.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_game_scoring.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_leaders.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_milestones.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_regular_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_regular_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_scoring.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_season_report.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_season_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_season_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_series_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_series_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-goalie_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-html_on_ice_pbp.R | 839 +++--- nhlscraper-0.7.0/nhlscraper/tests/testthat/test-load_pbp_raw.R | 49 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-load_shift_chart_summaries.R | 29 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-location.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-lottery_odds.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-officials.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-on_ice_shift_timings.R | 9 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-pbp_schema.R | 346 +- nhlscraper-0.7.0/nhlscraper/tests/testthat/test-penalty_shots.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-player_game_log.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-player_seasons.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-player_summary.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-players.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-playoff_season_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-playoff_season_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-pss.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-replay.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-roster.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-roster_statistics.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-roster_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-schedule.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-scores.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-seasons.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-series.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-series_schedule.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-shift_chart.R | 248 - nhlscraper-0.7.0/nhlscraper/tests/testthat/test-shift_times_by_situation.R |only nhlscraper-0.7.0/nhlscraper/tests/testthat/test-short_missed_shots.R | 78 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_edge_leaders.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_edge_seasons.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_edge_shot_location.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_edge_shot_speed.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_edge_skating_distance.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_edge_skating_speed.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_edge_summary.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_edge_zone_time.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_game_report.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_leaders.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_milestones.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_playoff_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_playoff_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_regular_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_regular_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_season_report.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_series_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_series_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-skater_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-spotlight_players.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-standings.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-streams.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_edge_leaders.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_edge_seasons.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_edge_shot_location.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_edge_shot_speed.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_edge_skating_distance.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_edge_skating_speed.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_edge_summary.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_edge_zone_time.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_game_report.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_logos.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_month_schedule.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_prospects.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_season_report.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_season_schedule.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_season_statistics.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_season_stats.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_seasons.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-team_week_schedule.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-teams.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-tv_schedule.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-venues.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-wsc_pbp.R | 8 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-wsc_play_by_play.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-wsc_summary.R | 17 nhlscraper-0.7.0/nhlscraper/tests/testthat/test-xg-xgboost-model.R |only nhlscraper-0.7.0/nhlscraper/vignettes/back-to-back-tax.Rmd | 358 +- nhlscraper-0.7.0/nhlscraper/vignettes/draft-size-bias.Rmd | 293 +- nhlscraper-0.7.0/nhlscraper/vignettes/expected-goals-model.Rmd | 467 ++- nhlscraper-0.7.0/nhlscraper/vignettes/game-7-shot-quality.Rmd | 287 +- nhlscraper-0.7.0/nhlscraper/vignettes/play-by-play-pipeline.Rmd | 394 +-- nhlscraper-0.7.0/nhlscraper/vignettes/playoff-size.Rmd | 205 + nhlscraper-0.7.0/nhlscraper/vignettes/team-edge-archetypes.Rmd | 304 +- 488 files changed, 13197 insertions(+), 8908 deletions(-)
Title: Bayesian Adaptive Designs for Diagnostic Trials
Description: Simulate clinical trials for diagnostic test devices and evaluate
the operating characteristics under an adaptive design with futility
assessment determined via the posterior predictive probabilities.
Author: Graeme L. Hickey [cre, aut],
Yongqiang Zhang [aut],
Becton, Dickinson and Company [cph]
Maintainer: Graeme L. Hickey <graemeleehickey@gmail.com>
Diff between adaptDiag versions 0.1.0 dated 2021-08-17 and 0.1.1 dated 2026-06-28
DESCRIPTION | 14 MD5 | 54 +- NAMESPACE | 7 NEWS.md | 8 R/analysis.R | 171 ++++--- R/binom_test_power.R | 119 ++--- R/multi_trial.R | 198 +++++--- R/sim_data.R | 14 R/single_trial.R | 56 +- R/summarise_trials.R | 35 - README.md | 13 build/vignette.rds |binary inst/doc/julian.R | 39 - inst/doc/julian.Rmd | 20 inst/doc/julian.html | 602 +++++++++++++++++++-------- inst/doc/type1-error.R | 81 +-- inst/doc/type1-error.Rmd | 14 inst/doc/type1-error.html | 527 +++++++++++++++++------ man/binom_sample_size.Rd | 2 man/multi_trial.Rd | 48 +- tests/testthat/_snaps |only tests/testthat/test-binom-sample-size.R |only tests/testthat/test-both.R | 64 ++ tests/testthat/test-broglio.R | 278 ++++++++---- tests/testthat/test-multi-trial-validation.R |only vignettes/julian.Rmd | 20 vignettes/julian_cache |only vignettes/type1-error.Rmd | 14 28 files changed, 1602 insertions(+), 796 deletions(-)
Title: Joint Modelling of Repeated Measurements and Time-to-Event Data
Description: Analysis of repeated measurements and time-to-event data via random
effects joint models. Fits the joint models proposed by Henderson and colleagues
<doi:10.1093/biostatistics/1.4.465> (single event time) and by Williamson and
colleagues (2008) <doi:10.1002/sim.3451> (competing risks events time) to a
single continuous repeated measure. The time-to-event data is modelled using a
(cause-specific) Cox proportional hazards regression model with time-varying
covariates. The longitudinal outcome is modelled using a linear mixed effects
model. The association is captured by a latent Gaussian process. The model is
estimated using an Expectation Maximization algorithm. Some plotting functions
and the variogram are also included. This project is funded by the Medical
Research Council (Grant numbers G0400615 and MR/M013227/1).
Author: Pete Philipson [aut] ,
Ines Sousa [aut] ,
Peter J. Diggle [aut] ,
Paula Williamson [aut] ,
Ruwanthi Kolamunnage-Dona [aut] ,
Robin Henderson [aut],
Graeme L. Hickey [aut, cre] ,
Maria Sudell [ctb],
Medical Research Council [fnd]
Maintainer: Graeme L. Hickey <graemeleehickey@gmail.com>
Diff between joineR versions 1.2.8 dated 2023-01-22 and 1.2.9 dated 2026-06-28
joineR-1.2.8/joineR/vignettes/competing-risks_cache/html/jointmodel_3000a249d10c6b0169b24abd9c4daf0d.RData |only joineR-1.2.8/joineR/vignettes/competing-risks_cache/html/jointmodel_3000a249d10c6b0169b24abd9c4daf0d.rdb |only joineR-1.2.8/joineR/vignettes/competing-risks_cache/html/jointmodel_3000a249d10c6b0169b24abd9c4daf0d.rdx |only joineR-1.2.8/joineR/vignettes/competing-risks_cache/html/jointmodel_ses_9f0b9a6976e32c86ab4af953fe827c44.RData |only joineR-1.2.8/joineR/vignettes/competing-risks_cache/html/jointmodel_ses_9f0b9a6976e32c86ab4af953fe827c44.rdb |only joineR-1.2.8/joineR/vignettes/competing-risks_cache/html/jointmodel_ses_9f0b9a6976e32c86ab4af953fe827c44.rdx |only joineR-1.2.9/joineR/DESCRIPTION | 37 joineR-1.2.9/joineR/MD5 | 171 - joineR-1.2.9/joineR/NAMESPACE | 8 joineR-1.2.9/joineR/NEWS.md | 69 joineR-1.2.9/joineR/R/UniqueVariables.R | 38 joineR-1.2.9/joineR/R/aids.R | 57 joineR-1.2.9/joineR/R/emUpdate.R | 93 joineR-1.2.9/joineR/R/emUpdateCR.R | 205 +- joineR-1.2.9/joineR/R/epileptic.R | 68 joineR-1.2.9/joineR/R/heart.valve.R | 94 joineR-1.2.9/joineR/R/joineR-package.R | 47 joineR-1.2.9/joineR/R/joint.R | 388 +-- joineR-1.2.9/joineR/R/joint.object.R | 46 joineR-1.2.9/joineR/R/jointSE.R | 274 +- joineR-1.2.9/joineR/R/jointdata.R | 116 - joineR-1.2.9/joineR/R/jointplot.R | 194 + joineR-1.2.9/joineR/R/lines.jointdata.R | 30 joineR-1.2.9/joineR/R/liver.R | 46 joineR-1.2.9/joineR/R/longst.R | 63 joineR-1.2.9/joineR/R/mental.R | 47 joineR-1.2.9/joineR/R/plot.jointdata.R | 105 - joineR-1.2.9/joineR/R/plot.vargm.R | 77 joineR-1.2.9/joineR/R/points.jointdata.R | 28 joineR-1.2.9/joineR/R/prepLongData.R | 26 joineR-1.2.9/joineR/R/prepSurvData.R | 120 - joineR-1.2.9/joineR/R/reexports.R |only joineR-1.2.9/joineR/R/sample.jointdata.R | 40 joineR-1.2.9/joineR/R/simdat.R | 58 joineR-1.2.9/joineR/R/simjoint.R | 70 joineR-1.2.9/joineR/R/subset.jointdata.R | 22 joineR-1.2.9/joineR/R/summary.joint.R | 47 joineR-1.2.9/joineR/R/summary.jointdata.R | 87 joineR-1.2.9/joineR/R/summarybal.R | 36 joineR-1.2.9/joineR/R/survst.R | 43 joineR-1.2.9/joineR/R/tidy.joint.R |only joineR-1.2.9/joineR/R/to.balanced.R | 41 joineR-1.2.9/joineR/R/to.unbalanced.R | 28 joineR-1.2.9/joineR/R/utils.R | 15 joineR-1.2.9/joineR/R/variogram.R | 102 - joineR-1.2.9/joineR/README.md | 55 joineR-1.2.9/joineR/build/partial.rdb |only joineR-1.2.9/joineR/build/vignette.rds |binary joineR-1.2.9/joineR/inst/doc/competing-risks.R | 5 joineR-1.2.9/joineR/inst/doc/competing-risks.Rmd | 9 joineR-1.2.9/joineR/inst/doc/competing-risks.html | 188 - joineR-1.2.9/joineR/inst/doc/joineR.R | 31 joineR-1.2.9/joineR/inst/doc/joineR.Rmd | 54 joineR-1.2.9/joineR/inst/doc/joineR.html | 1007 ++++------ joineR-1.2.9/joineR/man/UniqueVariables.Rd | 8 joineR-1.2.9/joineR/man/aids.Rd | 49 joineR-1.2.9/joineR/man/epileptic.Rd | 58 joineR-1.2.9/joineR/man/glance.joint.Rd |only joineR-1.2.9/joineR/man/heart.valve.Rd | 88 joineR-1.2.9/joineR/man/joineR-package.Rd |only joineR-1.2.9/joineR/man/joineR.Rd | 13 joineR-1.2.9/joineR/man/joint.Rd | 70 joineR-1.2.9/joineR/man/joint.object.Rd | 42 joineR-1.2.9/joineR/man/jointSE.Rd | 75 joineR-1.2.9/joineR/man/jointdata.Rd | 24 joineR-1.2.9/joineR/man/jointplot.Rd | 54 joineR-1.2.9/joineR/man/lines.jointdata.Rd | 10 joineR-1.2.9/joineR/man/liver.Rd | 36 joineR-1.2.9/joineR/man/mental.Rd | 36 joineR-1.2.9/joineR/man/plot.jointdata.Rd | 8 joineR-1.2.9/joineR/man/plot.vargm.Rd | 10 joineR-1.2.9/joineR/man/points.jointdata.Rd | 6 joineR-1.2.9/joineR/man/reexports.Rd |only joineR-1.2.9/joineR/man/sample.jointdata.Rd | 12 joineR-1.2.9/joineR/man/simjoint.Rd | 18 joineR-1.2.9/joineR/man/subset.jointdata.Rd | 4 joineR-1.2.9/joineR/man/summary.jointdata.Rd | 16 joineR-1.2.9/joineR/man/summarybal.Rd | 12 joineR-1.2.9/joineR/man/tidy.joint.Rd |only joineR-1.2.9/joineR/man/to.balanced.Rd | 10 joineR-1.2.9/joineR/man/to.unbalanced.Rd | 10 joineR-1.2.9/joineR/man/variogram.Rd | 8 joineR-1.2.9/joineR/tests/testthat/Rplots.pdf |binary joineR-1.2.9/joineR/tests/testthat/test-ancillary.R | 139 - 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Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb] ,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between insight versions 1.5.1 dated 2026-05-21 and 1.5.2 dated 2026-06-28
DESCRIPTION | 8 MD5 | 42 ++-- NAMESPACE | 1 NEWS.md | 19 + R/get_mixed_info.R | 18 + R/get_modelmatrix.R | 29 +- R/get_priors.R | 25 +- R/get_varcov.R | 7 R/utils_compact.R | 141 +++++++++++--- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 8 inst/doc/display.html | 370 ++++++++++++++++++------------------- man/compact_list.Rd | 13 + tests/testthat/test-brms.R | 42 ++++ tests/testthat/test-compact-list.R | 36 +++ tests/testthat/test-format_table.R | 2 tests/testthat/test-get_priors.R | 25 ++ tests/testthat/test-glmmPQL.R | 1 tests/testthat/test-lavaan.R | 27 ++ tests/testthat/test-svylme.R | 1 tests/testthat/test-tidymodels.R | 2 22 files changed, 555 insertions(+), 262 deletions(-)
Title: AI Copilot for R Analysis Workflows in 'RStudio'
Description: An AI copilot for R users in 'RStudio' and Posit workflows with
active-editor, workspace, object, console, plot, and git-aware context.
Provides statistical helpers for interpreting lm() and glm()
models, stages code and file actions before execution, drafts
reproducible 'Quarto' content, and connects to official provider
APIs or CLIs for 'OpenAI', 'GitHub Copilot', 'Gemini', and 'Anthropic'.
Author: Markuss Saule [aut, cre, cph]
Maintainer: Markuss Saule <markusstomas@gmail.com>
Diff between ravel versions 0.1.1 dated 2026-04-03 and 0.1.2 dated 2026-06-28
DESCRIPTION | 6 +- MD5 | 41 ++++++++++------- NAMESPACE | 2 NEWS.md | 9 +++ R/approvals.R | 40 ++++++++++++++++- R/auth.R | 10 +++- R/execution.R | 23 ++++++++- R/mcp.R |only R/providers_anthropic.R | 10 +++- R/providers_copilot.R | 3 - R/providers_gemini.R | 10 +++- R/providers_openai.R | 93 ++++++++++++++++++++++++++++++++++++---- build/vignette.rds |binary inst/doc/ravel-mvp.html | 19 ++++---- inst/doc/ravel-showcase.R |only inst/doc/ravel-showcase.Rmd |only inst/doc/ravel-showcase.html |only man/ravel_apply_action.Rd | 10 +++- man/ravel_mcp_tool.Rd |only man/ravel_mcp_tools.Rd |only man/ravel_run_code.Rd | 10 +++- tests/testthat/test-execution.R | 15 ++++++ tests/testthat/test-providers.R | 26 +++++++++++ tests/testthat/test-setup.R | 4 + vignettes/ravel-showcase.Rmd |only 25 files changed, 280 insertions(+), 51 deletions(-)
Title: 'Material UI' for 'shiny' Apps and 'Quarto'
Description: Wraps the 'Material UI' React components <https://mui.com/> for use in R, 'shiny'
applications and 'quarto' documents, including inputs, layouts, navigation, and
surfaces. All inputs come with R usage examples.
Author: Felix Luginbuhl [aut, cre, cph] ,
MUI [cph] ,
Emotion team [cph] ,
Meta Platforms, Inc. and affiliates [cph]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between muiMaterial versions 0.2.0 dated 2026-06-04 and 0.2.1 dated 2026-06-28
DESCRIPTION | 6 MD5 | 10 NEWS.md | 12 README.md | 4 inst/www/muiMaterial/mui-material.js | 368 +++++++++++------------ inst/www/muiMaterial/mui-material.js.LICENSE.txt | 50 +++ 6 files changed, 256 insertions(+), 194 deletions(-)
Title: Sparse Fused Plackett-Luce
Description: Implements the methodological developments found in Hermes, van Heerwaarden, and Behrouzi (2025) <doi:10.48550/arXiv.2407.10846>, and allows for the statistical modeling of multi-group rank data in combination with object variables. The package also allows for the simulation of synthetic multi-group rank data.
Author: Sjoerd Hermes [aut, cre]
Maintainer: Sjoerd Hermes <sjoerd.hermes@wur.nl>
Diff between SFPL versions 1.0.0 dated 2024-07-26 and 1.0.1 dated 2026-06-28
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-06-05 1.0.3
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Ethan B. Smith [ctb],
Wouter Thielen [ctb],
Paul Teetor [ctb],
Steve Bronder [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between quantmod versions 0.4.28 dated 2025-06-19 and 0.4.29 dated 2026-06-28
DESCRIPTION | 6 +- MD5 | 10 ++-- NEWS.md | 11 ++++ R/chartSeries.R | 18 +++++-- R/getSymbols.R | 112 ++++++++++++++++++++++++++++++++++++------------- man/getSymbols.FRED.Rd | 2 6 files changed, 117 insertions(+), 42 deletions(-)
Title: Minimization of the Convex Clustering Loss Function
Description: Implements the convex clustering through majorization-minimization (CCMM) algorithm described in Touw, Groenen, and Terada (2022) <doi:10.48550/arXiv.2211.01877> to perform minimization of the convex clustering loss function.
Author: Daniel Touw [aut, cre] ,
Patrick Groenen [aut] ,
Yoshikazu Terada [aut]
Maintainer: Daniel Touw <touw@ese.eur.nl>
Diff between CCMMR versions 0.2.1 dated 2024-11-07 and 0.2.2 dated 2026-06-28
CCMMR-0.2.1/CCMMR/inst |only CCMMR-0.2.2/CCMMR/DESCRIPTION | 16 +++-- CCMMR-0.2.2/CCMMR/MD5 | 22 +++----- CCMMR-0.2.2/CCMMR/NEWS | 14 +++++ CCMMR-0.2.2/CCMMR/man/plot.cvxclust.Rd | 86 ++++++++++++++++---------------- CCMMR-0.2.2/CCMMR/man/two_half_moons.Rd | 38 +++++++------- CCMMR-0.2.2/CCMMR/src/eps_fusions.cpp | 2 CCMMR-0.2.2/CCMMR/src/weights.cpp | 5 + CCMMR-0.2.2/CCMMR/tests |only 9 files changed, 99 insertions(+), 84 deletions(-)
Title: Supervised Dimensional Reduction by Guided Partial Least Squares
Description: Guided partial least squares (guided-PLS) is the combination of partial least squares by singular value decomposition (PLS-SVD) and guided principal component analysis (guided-PCA). This package provides implementations of PLS-SVD, guided-PLS, and guided-PCA for supervised dimensionality reduction. The guided-PCA function (new in v1.1.0) automatically handles mixed data types (continuous and categorical) in the supervision matrix and provides detailed contribution analysis for interpretability. For the details of the methods, see the reference section of GitHub README.md <https://github.com/rikenbit/guidedPLS>.
Author: Koki Tsuyuzaki [aut, cre]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between guidedPLS versions 1.1.0 dated 2025-08-25 and 1.2.1 dated 2026-06-28
DESCRIPTION | 10 ++-- MD5 | 23 +++++----- NAMESPACE | 1 R/guidedPLS-internal.R | 69 +++++++++++++++++++++++++++++++ R/guidedPLS.R | 89 +++++++++++++++++++++++++++------------- build/partial.rdb |binary inst/NEWS | 14 ++++++ inst/doc/guidedPLS-1.html | 10 ++-- inst/doc/guidedPLS-2.html | 10 ++-- man/guidedPLS.Rd | 2 tests/testthat.R | 2 tests/testthat/test_guidedPLS.R | 2 tests/testthat/test_sparse.R |only 13 files changed, 177 insertions(+), 55 deletions(-)
Title: ICA-Based Matrix/Tensor Decomposition
Description: Some functions for performing ICA, MICA, Group ICA, and Multilinear ICA are implemented.
ICA, MICA/Group ICA, and Multilinear ICA extract statistically independent components from single matrix, multiple matrices, and single tensor, respectively.
For the details of these methods, see the reference section of GitHub README.md <https://github.com/rikenbit/iTensor>.
Author: Koki Tsuyuzaki [aut, cre]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between iTensor versions 1.0.5 dated 2026-05-11 and 1.0.6 dated 2026-06-28
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NAMESPACE | 2 +- R/ICA2.R | 1 - R/geigen.R |only inst/NEWS | 5 +++++ inst/doc/iTensor-1.html | 20 ++++++++++---------- inst/doc/iTensor-2.html | 24 ++++++++++++------------ inst/doc/iTensor-3.html | 33 ++++++++++++++++----------------- man/geigen.Rd |only 10 files changed, 57 insertions(+), 52 deletions(-)
Title: Mixed Temporal Vectors and Operations
Description: Flexible time classes for time series analysis and forecasting with
mixed temporal granularities. Supports linear and cyclical time
representations in discrete and continuous forms, with timezone support,
across multiple calendar systems including Gregorian and ISO week date
calendars. Time points are stored numerically relative to a chronon; an
atomic time granule defined by time units of a calendar. Calendrical
arithmetic enables conversion between time granules (e.g. days to months)
and calendar systems. Multi-unit arithmetic allows for temporal analysis
with other granules of common calendars (e.g. fortnights are 2-week units).
Time vectors of different granularities (e.g. monthly and quarterly) can be
combined in a single vector, making 'mixtime' ideal for data that changes
observation frequency over time or requires temporal reconciliation across
scales. The package is extensible, allowing users to define custom calendars
that build upon civil and astronomical time systems.
Author: Mitchell O'Hara-Wild [aut, cre]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between mixtime versions 0.1.0 dated 2026-05-19 and 0.2.0 dated 2026-06-28
DESCRIPTION | 8 +- MD5 | 97 ++++++++++++++++++------------------ NAMESPACE | 14 ++++- NEWS.md | 33 ++++++++++++ R/00_utils.R | 24 ++++++++ R/01_chronon_cardinality.R | 9 ++- R/01_chronon_divmod.R | 10 ++- R/01_chronon_format.R | 24 ++++++-- R/01_cyclical_labels.R | 3 - R/01_linear_labels.R | 3 - R/01_time_unit.R | 13 ++++ R/cal0_time_astro.R | 4 + R/cal0_time_civil.R | 14 ++--- R/cal0_time_lunar.R | 36 +++++++------ R/cal0_time_solar.R | 38 ++++++++------ R/cal_gregorian.R | 39 ++++++++------ R/cal_isoweek.R | 4 - R/cal_sym454.R | 4 - R/chronon_common.R | 9 ++- R/chronon_convert.R | 94 ++++++++++++++++++++-------------- R/cyclical_time.R | 28 ---------- R/duration.R | 47 ++++++++--------- R/format.R | 57 +++++++++++++++++---- R/linear_time.R | 76 +++++++++++++++++++--------- R/mixtime.R | 9 ++- R/sequence.R | 11 ++-- R/time.R | 6 -- R/time_chronon.R | 2 R/time_parts.R | 4 - R/timezone.R | 57 ++++++++++++++------- R/tsbl-compat.R | 4 - R/vctrs.R | 47 +++++++++++++---- R/zzz.R | 6 +- README.md | 26 ++++----- inst/doc/extending-mixtime.R | 8 ++ inst/doc/extending-mixtime.Rmd | 21 +++++-- inst/doc/extending-mixtime.html | 29 ++++++++-- inst/doc/time-format-strings.html | 22 ++++---- man/calendar_time_lunar.Rd | 29 ++++++---- man/calendar_time_solar.Rd | 16 +++-- man/chronon_format.Rd | 7 ++ man/time_unit_labels.Rd | 9 +++ tests/testthat/test-arithmetic.R |only tests/testthat/test-cal-gregorian.R | 75 ++++++++++++++++++++++++++- tests/testthat/test-duration.R |only tests/testthat/test-format.R |only tests/testthat/test-math.R |only tests/testthat/test-round.R | 2 tests/testthat/test-timezones.R | 40 ++++++++++++++ tests/testthat/test-tsibble.R |only tests/testthat/test-vctrs.R | 12 ++++ vignettes/extending-mixtime.Rmd | 21 +++++-- 52 files changed, 787 insertions(+), 364 deletions(-)
Title: Forensic Pedigree Analysis and Relatedness Inference
Description: Forensic applications of pedigree analysis, including
likelihood ratios for relationship testing, general relatedness
inference, marker simulation, and power analysis. 'forrel' is part of
the 'pedsuite', a collection of packages for pedigree analysis,
further described in the book 'Pedigree Analysis in R' (Vigeland,
2021, ISBN:9780128244302). Several functions deal specifically with
power analysis in missing person cases, implementing methods described
in Vigeland et al. (2020) <doi:10.1016/j.fsigen.2020.102376>. Data
import from the 'Familias' software (Egeland et al. (2000)
<doi:10.1016/S0379-0738(00)00147-X>) is supported through the
'pedFamilias' package.
Author: Magnus Dehli Vigeland [aut, cre] ,
Thore Egeland [ctb]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between forrel versions 1.8.1 dated 2025-07-21 and 1.9.0 dated 2026-06-28
forrel-1.8.1/forrel/R/familias-deprecated.R |only forrel-1.8.1/forrel/man/familias.Rd |only forrel-1.8.1/forrel/tests/testthat/test-utils.R |only forrel-1.9.0/forrel/DESCRIPTION | 13 forrel-1.9.0/forrel/MD5 | 88 ++-- forrel-1.9.0/forrel/NAMESPACE | 14 forrel-1.9.0/forrel/NEWS.md | 34 + forrel-1.9.0/forrel/R/LRpower.R | 23 - forrel-1.9.0/forrel/R/MPPsims.R | 42 -- forrel-1.9.0/forrel/R/checkPairwise.R | 59 +- forrel-1.9.0/forrel/R/data.R | 2 forrel-1.9.0/forrel/R/exclusionPower.R | 76 ++- forrel-1.9.0/forrel/R/fEstimate.R |only forrel-1.9.0/forrel/R/findExclusions.R | 42 +- forrel-1.9.0/forrel/R/forrel-package.R | 1 forrel-1.9.0/forrel/R/ibdEstimate.R | 16 forrel-1.9.0/forrel/R/kinshipLR.R | 48 +- forrel-1.9.0/forrel/R/markerSim.R | 260 +++++++------ forrel-1.9.0/forrel/R/missingPersonIP.R | 28 - forrel-1.9.0/forrel/R/missingPersonLR.R | 6 forrel-1.9.0/forrel/R/missingPersonPlot.R | 2 forrel-1.9.0/forrel/R/pairwiseSim.R | 6 forrel-1.9.0/forrel/R/powerPlot.R | 1 forrel-1.9.0/forrel/R/profileSim.R | 237 +++++++---- forrel-1.9.0/forrel/R/quickLR.R | 26 - forrel-1.9.0/forrel/R/rankProfiles.R | 2 forrel-1.9.0/forrel/R/utils.R | 41 -- forrel-1.9.0/forrel/build/partial.rdb |binary forrel-1.9.0/forrel/man/LRpower.Rd | 5 forrel-1.9.0/forrel/man/MPPsims.Rd | 6 forrel-1.9.0/forrel/man/NorwegianFrequencies.Rd | 2 forrel-1.9.0/forrel/man/checkPairwise.Rd | 2 forrel-1.9.0/forrel/man/fEstimate.Rd |only forrel-1.9.0/forrel/man/findExclusions.Rd | 2 forrel-1.9.0/forrel/man/forrel-package.Rd | 5 forrel-1.9.0/forrel/man/kinshipLR.Rd | 2 forrel-1.9.0/forrel/man/markerSim.Rd | 6 forrel-1.9.0/forrel/man/markerSimParametric.Rd | 6 forrel-1.9.0/forrel/man/missingPersonIP.Rd | 1 forrel-1.9.0/forrel/man/parentChildLikelihood.Rd |only forrel-1.9.0/forrel/man/profileSim.Rd | 58 ++ forrel-1.9.0/forrel/man/quickLR.Rd | 14 forrel-1.9.0/forrel/man/rankProfiles.Rd | 2 forrel-1.9.0/forrel/tests/testthat/test-exclusion.R | 17 forrel-1.9.0/forrel/tests/testthat/test-ibdEstimate.R |only forrel-1.9.0/forrel/tests/testthat/test-kinshipLR-merlin.R | 4 forrel-1.9.0/forrel/tests/testthat/test-kinshipLR.R | 63 +++ forrel-1.9.0/forrel/tests/testthat/test-other.R |only forrel-1.9.0/forrel/tests/testthat/test-sims.R | 121 +++++- 49 files changed, 866 insertions(+), 517 deletions(-)
Title: Core Tools for Packages in the 'fable' Framework
Description: Provides tools, helpers and data structures for
developing models and time series functions for 'fable' and extension
packages. These tools support a consistent and tidy interface for time
series modelling and analysis.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Rob Hyndman [aut],
Earo Wang [aut] ,
Di Cook [ctb],
George Athanasopoulos [ctb],
David Holt [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fabletools versions 0.7.0 dated 2026-04-30 and 0.8.0 dated 2026-06-28
DESCRIPTION | 8 MD5 | 35 +- NAMESPACE | 8 NEWS.md | 43 +++ R/accuracy.R | 20 + R/coherent.R | 36 +- R/mable.R | 4 R/model_combination.R | 441 ++++++++++++++++++++--------------- R/model_decomposition.R | 18 - R/reconciliation.R | 120 +++++---- build/stage23.rdb |binary man/accuracy.Rd | 3 man/coherent_cmat.Rd | 4 man/coherent_smat.Rd | 10 man/mable.Rd | 2 man/model_combination_ops.Rd |only tests/testthat/test-combination.R | 121 +++++++++ tests/testthat/test-mable.R | 2 tests/testthat/test-reconciliation.R | 84 ++++++ 19 files changed, 679 insertions(+), 280 deletions(-)
Title: Multivariate Data Analysis for Chemometrics
Description: Projection based methods for preprocessing, exploring and analysis of multivariate data used in chemometrics. S. Kucheryavskiy (2020) <doi:10.1016/j.chemolab.2020.103937>.
Author: Sergey Kucheryavskiy [aut, cre]
Maintainer: Sergey Kucheryavskiy <svkucheryavski@gmail.com>
Diff between mdatools versions 0.15.0 dated 2026-03-06 and 0.16.0 dated 2026-06-28
DESCRIPTION | 10 ++++---- MD5 | 50 +++++++++++++++++++++++++------------------ NAMESPACE | 17 ++++++++++++++ NEWS.md | 8 ++++++ R/ddsimca.R | 31 ++++++++++++++++++++------ R/ddsimca3w.R |only R/ddsimcares.R | 20 +++++++++-------- R/defaults.R | 14 +++++++++++- R/pca.R | 28 ++++++++++++++++++++---- R/pls.R | 22 ++++++++++++++++-- R/prep.R | 10 +++++--- README.md | 2 - data/data3w.RData |only data/datalist |only man/asjson.pls.Rd | 4 ++- man/classify.Rd | 6 ++++- man/data3w.Rd |only man/ddsimca.parafac.Rd |only man/ddsimca.tucker.Rd |only man/plotDistDoF.Rd | 9 +++++-- man/plotFactors.Rd |only man/plotFactors.ddsimca3w.Rd |only man/plotQDoF.Rd | 9 +++++-- man/plotT2DoF.Rd | 9 +++++-- man/predict.ddsimca3w.Rd |only man/prep.alsbasecorr.Rd | 2 - man/setParams.ddsimca3w.Rd |only man/writeJSON.Rd | 4 ++- man/writeJSON.pca.Rd | 4 ++- man/writeJSON.pls.Rd | 6 ++++- man/writeJSON.prepmodel.Rd | 4 ++- 31 files changed, 199 insertions(+), 70 deletions(-)