Title: Columnar Query Engine for Larger-than-RAM Data
Description: A minimal columnar query engine with lazy execution on datasets
larger than RAM. Provides 'dplyr'-like verbs (filter(), select(), mutate(),
group_by(), summarise(), joins, window functions) and common aggregations
(n(), sum(), mean(), min(), max(), sd(), first(), last()) backed by a
pure C11 pull-based execution engine and a custom on-disk format ('.vtr').
Reads and writes 'GeoTIFF' (including tiled and 'BigTIFF' layouts) and a
tiled raster format ('.vec') with overview pyramids and time cubes for
larger-than-RAM raster data. Streams vector operations (spatial transforms,
point-in-polygon and nearest-feature joins including a two-sided
grid-partitioned join, select-by-location, clip, erase, dissolve,
'rasterization', 'polygonization', and contouring) through 'sf', and runs
raster operations (zonal statistics, focal windows, terrain derivatives,
resample or 'reproject' warp, polygon masking, map algebra, and 'mosaicking')
in native C or over the tiled '.vec' format, one batch or tile at [...truncated...]
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between vectra versions 0.9.1 dated 2026-06-29 and 0.9.8 dated 2026-07-01
DESCRIPTION | 18 MD5 | 183 +++-- NAMESPACE | 32 + NEWS.md | 246 +++++++ R/embedding.R |only R/expr.R | 115 +++ R/geom_expr.R |only R/joins.R | 85 ++ R/network.R |only R/resample.R |only R/spatial.R | 954 ++++++++++++++++++++++++++++-- R/spatial_topology.R |only R/windows.R | 32 - README.md | 53 + build/vignette.rds |binary inst/doc/coverage-topology.R |only inst/doc/coverage-topology.Rmd |only inst/doc/coverage-topology.html |only inst/doc/engine.html | 4 inst/doc/formats.html | 54 - inst/doc/geometry-expressions.R |only inst/doc/geometry-expressions.Rmd |only inst/doc/geometry-expressions.html |only inst/doc/indexing.Rmd | 13 inst/doc/indexing.html | 30 inst/doc/joins.Rmd | 4 inst/doc/joins.html | 10 inst/doc/large-data.Rmd | 10 inst/doc/large-data.html | 23 inst/doc/networks.R |only inst/doc/networks.Rmd |only inst/doc/networks.html |only inst/doc/offload.Rmd | 12 inst/doc/offload.html | 40 - inst/doc/quickstart.R | 13 inst/doc/quickstart.Rmd | 14 inst/doc/quickstart.html | 33 - inst/doc/schema.Rmd | 8 inst/doc/schema.html | 14 inst/doc/sdm.html | 4 inst/doc/spatial.R | 14 inst/doc/spatial.Rmd | 26 inst/doc/spatial.html | 52 - inst/doc/streaming-spatial.R | 41 + inst/doc/streaming-spatial.Rmd | 90 ++ inst/doc/streaming-spatial.html | 423 ++++++++----- inst/doc/string-ops.Rmd | 2 inst/doc/string-ops.html | 17 man/as_embedding.Rd |only man/embedding_distance.Rd |only man/floor_time.Rd |only man/geom_expressions.Rd |only man/interval_join.Rd |only man/resample.Rd |only man/rolling.Rd |only man/spatial_centerline.Rd |only man/spatial_construct.Rd |only man/spatial_eliminate.Rd |only man/spatial_explode.Rd |only man/spatial_knn.Rd |only man/spatial_line_merge.Rd |only man/spatial_locate.Rd |only man/spatial_network.Rd |only man/spatial_overlay.Rd | 46 + man/spatial_polygonize.Rd |only man/spatial_route.Rd |only man/spatial_service_area.Rd |only man/spatial_simplify.Rd |only man/spatial_smooth.Rd |only man/spatial_snap.Rd |only man/spatial_snap_grid.Rd |only man/spatial_split.Rd |only man/spatial_topology.Rd |only src/edt.c | 4 src/expr.c | 7 src/expr.h | 30 src/expr_datetime.c | 78 ++ src/expr_geom.c |only src/expr_vec.c |only src/focal.c | 4 src/fuzzy_join.c | 274 -------- src/fuzzy_join.h | 14 src/init.c | 11 src/interval_join.c |only src/interval_join.h |only src/join_partition.c |only src/join_partition.h |only src/network.c |only src/r_bridge.h | 6 src/r_bridge_core.c | 61 + src/r_bridge_nodes.c | 84 ++ src/vec_distance.h |only src/vec_omp.h | 28 src/vtr_overlay.c | 4 src/vtr_spatial.c | 4 src/warp.c | 4 src/window.c | 151 ++++ src/window.h | 9 tests/testthat/test-embedding.R |only tests/testthat/test-geom-expr.R |only tests/testthat/test-interval-join.R |only tests/testthat/test-network.R |only tests/testthat/test-resample.R |only tests/testthat/test-rolling.R |only tests/testthat/test-spatial-construct.R |only tests/testthat/test-spatial-explode.R |only tests/testthat/test-spatial-knn.R |only tests/testthat/test-spatial-overlay-two.R |only tests/testthat/test-spatial-smooth.R |only tests/testthat/test-spatial-snap.R |only tests/testthat/test-spatial-split.R |only tests/testthat/test-spatial-topology.R |only vignettes/coverage-topology.Rmd |only vignettes/geometry-expressions.Rmd |only vignettes/indexing.Rmd | 13 vignettes/joins.Rmd | 4 vignettes/large-data.Rmd | 10 vignettes/networks.Rmd |only vignettes/offload.Rmd | 12 vignettes/quickstart.Rmd | 14 vignettes/schema.Rmd | 8 vignettes/spatial.Rmd | 26 vignettes/streaming-spatial.Rmd | 90 ++ vignettes/string-ops.Rmd | 2 124 files changed, 2829 insertions(+), 838 deletions(-)
Title: Struct-Like Data Type Checking and Enforcement
Description: Enforcement of field types in lists. A drop-in tool to allow for
dynamic input data that might be questionably parsed or cast to be coerced
into the specific desired format in a reasonably performant manner.
Author: Samuel Sapire [aut, cre, cph],
Sean Barrett [ctb]
Maintainer: Samuel Sapire <sapires@protonmail.com>
Diff between structenforcement versions 0.3.0 dated 2026-06-30 and 0.3.1 dated 2026-07-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ src/functions.c | 19 ++++++++++--------- tests/testthat/test-type_check.R | 1 + tests/testthat/test-type_check_each.R | 24 ++++++++++++++++++++++++ 6 files changed, 47 insertions(+), 17 deletions(-)
More information about structenforcement at CRAN
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More information about saeHB.Spatial.Beta at CRAN
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Title: Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Description: Utility package containing: Main categories: Working with grouped data: 'do' something to data when stratified 'by' some variables. General linear estimates. Data handling utilities. Functional programming, in particular restrict functions to a smaller domain. Miscellaneous functions for data handling. Model stability in connection with model selection. Miscellaneous other tools.
Author: Ulrich Halekoh [aut, cph],
Soeren Hoejsgaard [aut, cre, cph]
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between doBy versions 4.7.1 dated 2025-12-02 and 4.7.2 dated 2026-07-01
doBy-4.7.1/doBy/man/beets.Rd |only doBy-4.7.1/doBy/man/carcass.Rd |only doBy-4.7.1/doBy/man/child_growth.Rd |only doBy-4.7.1/doBy/man/codstom.Rd |only doBy-4.7.1/doBy/man/crickets.Rd |only doBy-4.7.1/doBy/man/crimeRate.Rd |only doBy-4.7.1/doBy/man/crime_rate.Rd |only doBy-4.7.1/doBy/man/cropyield.Rd |only doBy-4.7.1/doBy/man/data-wine.Rd |only doBy-4.7.1/doBy/man/dietox.Rd |only doBy-4.7.1/doBy/man/fatacid.Rd |only doBy-4.7.1/doBy/man/fev.Rd |only doBy-4.7.1/doBy/man/haldCement.Rd |only doBy-4.7.1/doBy/man/income.Rd |only doBy-4.7.1/doBy/man/math_teachers.Rd |only doBy-4.7.1/doBy/man/milkman.Rd |only doBy-4.7.1/doBy/man/nir_milk.Rd |only doBy-4.7.1/doBy/man/potatoes.Rd |only doBy-4.7.1/doBy/man/shoes.Rd |only doBy-4.7.2/doBy/DESCRIPTION | 15 doBy-4.7.2/doBy/MD5 | 104 ++-- doBy-4.7.2/doBy/NAMESPACE | 10 doBy-4.7.2/doBy/NEWS.md | 9 doBy-4.7.2/doBy/R/DATA_doby.R | 46 +- doBy-4.7.2/doBy/R/NAMESPACE_doby.R | 14 doBy-4.7.2/doBy/R/by_lmBy.R | 11 doBy-4.7.2/doBy/R/by_scaleBy.R | 2 doBy-4.7.2/doBy/R/compute_on_forecast.R | 582 ++++++++++++++++++++++---- doBy-4.7.2/doBy/R/data_firstobs_lastobs.R | 3 doBy-4.7.2/doBy/R/doby_utilities.R | 3 doBy-4.7.2/doBy/R/lag_data.R |only doBy-4.7.2/doBy/R/linest_LSmeans.R | 3 doBy-4.7.2/doBy/R/linest_compute.R | 3 doBy-4.7.2/doBy/R/linest_utilities.R | 7 doBy-4.7.2/doBy/R/model_stability.r | 322 +++++--------- doBy-4.7.2/doBy/R/modelling.R | 160 +++---- doBy-4.7.2/doBy/build/vignette.rds |binary doBy-4.7.2/doBy/inst/doc/doby.html | 22 doBy-4.7.2/doBy/inst/doc/pipe_arithmetic.html | 6 doBy-4.7.2/doBy/inst/doc/sectioning_fun.html | 59 +- doBy-4.7.2/doBy/inst/doc/vtools.html | 6 doBy-4.7.2/doBy/man/add_pred.Rd | 18 doBy-4.7.2/doBy/man/add_resid.Rd | 10 doBy-4.7.2/doBy/man/align_coefs.Rd | 33 - doBy-4.7.2/doBy/man/by-lmby.Rd | 7 doBy-4.7.2/doBy/man/cv_glm_fitlist.Rd | 6 doBy-4.7.2/doBy/man/data_beets.Rd |only doBy-4.7.2/doBy/man/data_berkeley_growth.Rd |only doBy-4.7.2/doBy/man/data_carcass.Rd |only doBy-4.7.2/doBy/man/data_codstom.Rd |only doBy-4.7.2/doBy/man/data_crickets.Rd |only doBy-4.7.2/doBy/man/data_crimeRate.Rd |only doBy-4.7.2/doBy/man/data_crime_rate.Rd |only doBy-4.7.2/doBy/man/data_cropyield.Rd |only doBy-4.7.2/doBy/man/data_dietox.Rd |only doBy-4.7.2/doBy/man/data_fatacid.Rd |only doBy-4.7.2/doBy/man/data_fev.Rd |only doBy-4.7.2/doBy/man/data_haldCement.Rd |only doBy-4.7.2/doBy/man/data_income.Rd |only doBy-4.7.2/doBy/man/data_math_teachers.Rd |only doBy-4.7.2/doBy/man/data_milkman.Rd |only doBy-4.7.2/doBy/man/data_nir_milk.Rd |only doBy-4.7.2/doBy/man/data_potatoes.Rd |only doBy-4.7.2/doBy/man/data_shoes.Rd |only doBy-4.7.2/doBy/man/data_wine.Rd |only doBy-4.7.2/doBy/man/generate_data_list.Rd | 26 + doBy-4.7.2/doBy/man/get_formulas.Rd | 4 doBy-4.7.2/doBy/man/is_estimable.Rd | 2 doBy-4.7.2/doBy/man/lag_data.Rd |only doBy-4.7.2/doBy/man/model_stability_glm.Rd | 75 +++ doBy-4.7.2/doBy/man/response.Rd | 6 doBy-4.7.2/doBy/man/set_list_set_matrix.Rd | 4 doBy-4.7.2/doBy/man/transform_forecast.Rd | 74 ++- 73 files changed, 1082 insertions(+), 570 deletions(-)
Title: General Modules for 'teal' Applications
Description: Prebuilt 'shiny' modules containing tools for viewing data,
visualizing data, understanding missing and outlier values within your
data and performing simple data analysis. This extends 'teal'
framework that supports reproducible research and analysis.
Author: Dony Unardi [aut, cre],
Dawid Kaledkowski [aut],
Pawel Rucki [aut],
Mahmoud Hallal [aut],
Ondrej Slama [ctb],
Maciej Nasinski [aut],
Konrad Pagacz [aut],
Nikolas Burkoff [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dony Unardi <unardid@gene.com>
Diff between teal.modules.general versions 0.6.0 dated 2025-12-03 and 0.7.0 dated 2026-07-01
teal.modules.general-0.6.0/teal.modules.general/man/get_scatterplotmatrix_stats.Rd |only teal.modules.general-0.6.0/teal.modules.general/man/select_decorators.Rd |only teal.modules.general-0.6.0/teal.modules.general/man/srv_decorate_teal_data.Rd |only teal.modules.general-0.6.0/teal.modules.general/tests/testthat/man/get_scatterplotmatrix_stats.Rd |only teal.modules.general-0.6.0/teal.modules.general/tests/testthat/man/select_decorators.Rd |only teal.modules.general-0.6.0/teal.modules.general/tests/testthat/man/srv_decorate_teal_data.Rd |only teal.modules.general-0.6.0/teal.modules.general/tests/testthat/test_scatterplotmatrix_get_stats.R |only teal.modules.general-0.7.0/teal.modules.general/DESCRIPTION | 30 teal.modules.general-0.7.0/teal.modules.general/MD5 | 143 - teal.modules.general-0.7.0/teal.modules.general/NAMESPACE | 1 teal.modules.general-0.7.0/teal.modules.general/NEWS.md | 34 teal.modules.general-0.7.0/teal.modules.general/R/tm_a_pca.R | 68 teal.modules.general-0.7.0/teal.modules.general/R/tm_a_regression.R | 15 teal.modules.general-0.7.0/teal.modules.general/R/tm_data_table.R | 14 teal.modules.general-0.7.0/teal.modules.general/R/tm_front_page.R | 2 teal.modules.general-0.7.0/teal.modules.general/R/tm_g_association.R | 8 teal.modules.general-0.7.0/teal.modules.general/R/tm_g_bivariate.R | 8 teal.modules.general-0.7.0/teal.modules.general/R/tm_g_distribution.R | 77 teal.modules.general-0.7.0/teal.modules.general/R/tm_g_response.R | 8 teal.modules.general-0.7.0/teal.modules.general/R/tm_g_scatterplot.R | 8 teal.modules.general-0.7.0/teal.modules.general/R/tm_g_scatterplotmatrix.R | 366 +- teal.modules.general-0.7.0/teal.modules.general/R/tm_missing_data.R | 32 teal.modules.general-0.7.0/teal.modules.general/R/tm_outliers.R | 18 teal.modules.general-0.7.0/teal.modules.general/R/tm_rmarkdown.R | 12 teal.modules.general-0.7.0/teal.modules.general/R/tm_t_crosstable.R | 8 teal.modules.general-0.7.0/teal.modules.general/R/tm_variable_browser.R | 4 teal.modules.general-0.7.0/teal.modules.general/R/utils.R | 113 teal.modules.general-0.7.0/teal.modules.general/README.md | 7 teal.modules.general-0.7.0/teal.modules.general/inst/WORDLIST | 7 teal.modules.general-0.7.0/teal.modules.general/inst/doc/decorate-module-output.R | 16 teal.modules.general-0.7.0/teal.modules.general/inst/doc/decorate-module-output.Rmd | 31 teal.modules.general-0.7.0/teal.modules.general/inst/doc/decorate-module-output.html | 30 teal.modules.general-0.7.0/teal.modules.general/inst/doc/using-scatterplot-matrix.R | 1 teal.modules.general-0.7.0/teal.modules.general/inst/doc/using-scatterplot-matrix.Rmd | 1 teal.modules.general-0.7.0/teal.modules.general/inst/doc/using-scatterplot-matrix.html | 5 teal.modules.general-0.7.0/teal.modules.general/inst/sample_files/co2_example.html |only teal.modules.general-0.7.0/teal.modules.general/man/dot-scale_x_mosaic.Rd | 2 teal.modules.general-0.7.0/teal.modules.general/man/teal.modules.general.Rd | 4 teal.modules.general-0.7.0/teal.modules.general/man/tm_data_table.Rd | 2 teal.modules.general-0.7.0/teal.modules.general/man/tm_g_distribution.Rd | 5 teal.modules.general-0.7.0/teal.modules.general/man/tm_g_scatterplotmatrix.Rd | 15 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/helper-TealAppDriver.R | 19 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/helper-functions.R | 15 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/man/dot-scale_x_mosaic.Rd | 2 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/man/teal.modules.general.Rd | 4 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/man/tm_data_table.Rd | 2 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/man/tm_g_distribution.Rd | 5 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/man/tm_g_scatterplotmatrix.Rd | 15 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-examples.R | 4 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_a_pca.R | 3 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_a_regression.R | 3 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_data_table.R | 6 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_file_viewer.R | 3 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_front_page.R | 3 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_g_association.R | 8 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_g_bivariate.R | 3 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_g_distribution.R | 3 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_g_response.R | 3 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_g_scatterplot.R | 3 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_g_scatterplotmatrix.R | 5 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_missing_data.R | 30 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_outliers.R | 3 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_t_crosstable.R | 3 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-shinytest2-tm_variable_browser.R | 3 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_a_pca.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_a_regression.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_data_table.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_file_viewer.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_front_page.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_g_association.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_g_bivariate.R | 1097 ++++++- teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_g_distribution.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_g_response.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_g_scatterplot.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_g_scatterplotmatrix.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_missing_data.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_outliers.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_rmarkdown.R | 129 teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-tm_t_crosstable.R |only teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test-utils.R | 370 ++ teal.modules.general-0.7.0/teal.modules.general/tests/testthat/test_variable_browser.R | 1410 +++++++++- teal.modules.general-0.7.0/teal.modules.general/vignettes/decorate-module-output.Rmd | 31 teal.modules.general-0.7.0/teal.modules.general/vignettes/using-scatterplot-matrix.Rmd | 1 83 files changed, 3377 insertions(+), 904 deletions(-)
More information about teal.modules.general at CRAN
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Title: Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
Description: Statistical methods for the modeling and monitoring of time series
of counts, proportions and categorical data, as well as for the modeling
of continuous-time point processes of epidemic phenomena.
The monitoring methods focus on aberration detection in count data time
series from public health surveillance of communicable diseases, but
applications could just as well originate from environmetrics,
reliability engineering, econometrics, or social sciences. The package
implements many typical outbreak detection procedures such as the
(improved) Farrington algorithm, or the negative binomial GLR-CUSUM
method of Hoehle and Paul (2008) <doi:10.1016/j.csda.2008.02.015>.
A novel CUSUM approach combining logistic and multinomial logistic
modeling is also included. The package contains several real-world data
sets, the ability to simulate outbreak data, and to visualize the
results of the monitoring in a temporal, spatial or spatio-temporal
fashion. A recent overview of the available mon [...truncated...]
Author: Michael Hoehle [aut, ths] ,
Sebastian Meyer [aut, cre] ,
Michaela Paul [aut],
Leonhard Held [ctb, ths] ,
Howard Burkom [ctb],
Thais Correa [ctb],
Mathias Hofmann [ctb],
Christian Lang [ctb],
Juliane Manitz [ctb],
Sophie Reichert [ctb],
Andrea Riebler [...truncated...]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between surveillance versions 1.25.0 dated 2025-06-25 and 1.26.0 dated 2026-07-01
DESCRIPTION | 20 +-- MD5 | 188 ++++++++++++++++----------------- NAMESPACE | 13 -- NEWS.md | 20 +++ R/AllClass.R | 2 R/addSeason2formula.R | 8 - R/algo_call.R | 2 R/algo_farrington.R | 32 ++--- R/disProg.R | 2 R/epidataCS_methods.R | 2 R/epidataCS_plot.R | 28 ++-- R/farringtonFlexible.R | 91 ++++----------- R/functionTable.R | 15 +- R/hhh4.R | 10 - R/hhh4_W_powerlaw.R | 53 ++++++++- R/hhh4_amplitudeShift.R | 23 ++-- R/hhh4_methods.R | 4 R/hhh4_simulate.R | 11 + R/knox.R | 10 - R/makeControl.R | 4 R/options.R | 2 R/spatial_tools.R | 4 R/sts.R | 28 ++-- R/sts_toLatex.R | 16 -- R/sysdata.rda |binary R/twinstim.R | 16 +- R/twinstim_intensity.R | 9 + R/twinstim_methods.R | 27 +--- R/twinstim_simulation.R | 6 - R/zzz.R | 12 -- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary data/datalist |only demo/v77i11.R | 1 inst/CITATION | 3 inst/REFERENCES.bib |only inst/doc/glrnb.R | 2 inst/doc/glrnb.Rnw | 6 - inst/doc/glrnb.pdf |binary inst/doc/hhh4.R | 2 inst/doc/hhh4.Rnw | 18 +-- inst/doc/hhh4.pdf |binary inst/doc/hhh4_spacetime.Rnw | 23 ++-- inst/doc/hhh4_spacetime.pdf |binary inst/doc/monitoringCounts.R | 2 inst/doc/monitoringCounts.Rnw | 12 +- inst/doc/monitoringCounts.pdf |binary inst/doc/surveillance.R | 2 inst/doc/surveillance.Rnw | 6 - inst/doc/surveillance.pdf |binary inst/doc/twinSIR.Rnw | 11 + inst/doc/twinSIR.pdf |binary inst/doc/twinstim.R | 1 inst/doc/twinstim.Rnw | 56 +++++---- inst/doc/twinstim.pdf |binary man/LRCUSUM.runlength.Rd | 2 man/addSeason2formula.Rd | 11 + man/algo.quality.Rd | 4 man/epidata.Rd | 2 man/epidataCS.Rd | 4 man/epidataCS_plot.Rd | 1 man/hagelloch.Rd | 4 man/hhh4.Rd | 8 - man/hhh4_formula.Rd | 4 man/hhh4_methods.Rd | 2 man/hhh4_plot.Rd | 2 man/hhh4_validation.Rd | 2 man/knox.Rd | 3 man/macros/linkSPclass.Rd | 2 man/macros/vignette.Rd |only man/measles.weser.Rd | 2 man/stsplot_time.Rd | 11 + man/surveillance-defunct.Rd | 4 man/surveillance-package.Rd | 100 ++++++++++------- man/surveillance.options.Rd | 2 man/toLatex.sts.Rd | 3 man/twinSIR.Rd | 2 man/twinSIR_intensityplot.Rd | 2 man/twinstim.Rd | 4 man/twinstim_iaf.Rd | 2 man/twinstim_iafplot.Rd | 2 man/twinstim_methods.Rd | 8 - man/twinstim_plot.Rd | 2 tests/testthat/test-hhh4+derivatives.R | 14 ++ tests/testthat/test-toLatex.sts.R | 2 tests/testthat/test-twinstim_misc.R | 12 ++ vignettes/fixjss.sty |only vignettes/glrnb.Rnw | 6 - vignettes/hhh4.Rnw | 18 +-- vignettes/hhh4_spacetime.Rnw | 23 ++-- vignettes/monitoringCounts.Rnw | 12 +- vignettes/monitoringCounts.bib | 9 - vignettes/references.bib | 153 +------------------------- vignettes/surveillance.Rnw | 6 - vignettes/twinSIR.Rnw | 11 + vignettes/twinstim.Rnw | 56 +++++---- 97 files changed, 651 insertions(+), 671 deletions(-)
Title: High Throughput Phenotyping (HTP) Data Analysis
Description: Phenotypic analysis of data coming from high throughput
phenotyping (HTP) platforms, including different types of outlier detection,
spatial analysis, and parameter estimation. The package is being developed
within the EPPN2020 project (<https://cordis.europa.eu/project/id/731013>).
Some functions have been created to be used in conjunction with the R
package 'asreml' for the 'ASReml' software, which can be obtained upon
purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r/>).
Author: Emilie J Millet [aut] ,
Maria Xose Rodriguez Alvarez [aut] ,
Diana Marcela Perez Valencia [aut] ,
Isabelle Sanchez [aut],
Nadine Hilgert [aut],
Bart-Jan van Rossum [aut, cre] ,
Fred van Eeuwijk [aut] ,
Martin Boer [aut]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenHTP versions 1.0.9.2 dated 2026-05-21 and 1.0.9.3 dated 2026-07-01
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/Overview_HTP.html | 4 ++-- inst/tinytest/serieOut |binary inst/tinytest/splineEst |binary inst/tinytest/test_detectSerieOut.R | 9 ++++----- inst/tinytest/test_fitSpline.R | 2 +- tests/tinytest.R | 5 ++--- 11 files changed, 29 insertions(+), 27 deletions(-)
Title: Make Interactive 'PRISMA' Flow Diagrams
Description: Systematic reviews should be described in a high degree of
methodological detail. The 'PRISMA' Statement calls for a high level of
reporting detail in systematic reviews and meta-analyses. An integral part
of the methodological description of a review is a flow diagram.
This package produces an interactive flow diagram that conforms to the
'PRISMA2020' preprint. When made interactive, the reader/user can click
on each box and be directed to another website or file online (e.g. a
detailed description of the screening methods, or a list of excluded full
texts), with a mouse-over tool tip that describes the information linked
to in more detail. Interactive versions can be saved as HTML files,
whilst static versions for inclusion in manuscripts can be saved as
HTML, PDF, PNG, SVG, PS or WEBP files.
Author: Neal Haddaway [aut] ,
Luke McGuinness [aut] ,
Chris Pritchard [aut, cre] ,
Brennan Chapman [ctb],
Hossam Hammady [ctb],
Anders Kolstad [ctb] ,
Shreya Dimri [ctb] ,
Matt Lloyd Jones [ctb] ,
John-o Kulas [ctb]
Maintainer: Chris Pritchard <chris@christopherpritchard.co.uk>
Diff between PRISMA2020 versions 1.1.1 dated 2023-02-09 and 1.1.4 dated 2026-07-01
PRISMA2020-1.1.1/PRISMA2020/R/utils.R |only PRISMA2020-1.1.4/PRISMA2020/DESCRIPTION | 39 PRISMA2020-1.1.4/PRISMA2020/LICENSE | 2 PRISMA2020-1.1.4/PRISMA2020/MD5 | 56 PRISMA2020-1.1.4/PRISMA2020/NAMESPACE | 4 PRISMA2020-1.1.4/PRISMA2020/R/PRISMA_add_hyperlink.R |only PRISMA2020-1.1.4/PRISMA2020/R/PRISMA_calc_filetype.R |only PRISMA2020-1.1.4/PRISMA2020/R/PRISMA_data.R |only PRISMA2020-1.1.4/PRISMA2020/R/PRISMA_default_or_csv.R |only PRISMA2020-1.1.4/PRISMA2020/R/PRISMA_flowdiagram.R | 1355 +++----------- PRISMA2020-1.1.4/PRISMA2020/R/PRISMA_format.R |only PRISMA2020-1.1.4/PRISMA2020/R/PRISMA_gen_tmp_svg.R |only PRISMA2020-1.1.4/PRISMA2020/R/PRISMA_get.R |only PRISMA2020-1.1.4/PRISMA2020/R/PRISMA_insert_js.R |only PRISMA2020-1.1.4/PRISMA2020/R/PRISMA_interactive.R |only PRISMA2020-1.1.4/PRISMA2020/R/PRISMA_save.R |only PRISMA2020-1.1.4/PRISMA2020/R/defunct.R |only PRISMA2020-1.1.4/PRISMA2020/R/globals.R | 6 PRISMA2020-1.1.4/PRISMA2020/R/imports.R |only PRISMA2020-1.1.4/PRISMA2020/README.md | 1 PRISMA2020-1.1.4/PRISMA2020/inst/extdata/PRISMA.csv | 2 PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_add_hyperlink_.Rd | 2 PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_calc_filetype_.Rd | 2 PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_data.Rd | 2 PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_default_or_csv_.Rd |only PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_flowdiagram.Rd | 16 PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_format_number_.Rd | 2 PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_format_reasons_.Rd |only PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_gen_tmp_svg_.Rd | 2 PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_get_height_.Rd | 2 PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_get_pos_.Rd | 12 PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_insert_js_.Rd | 2 PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_interactive_.Rd | 2 PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_parse_reasons_.Rd |only PRISMA2020-1.1.4/PRISMA2020/man/PRISMA_save.Rd | 16 PRISMA2020-1.1.4/PRISMA2020/man/read_PRISMAdata.Rd | 2 PRISMA2020-1.1.4/PRISMA2020/man/sr_flow_interactive.Rd | 2 37 files changed, 482 insertions(+), 1047 deletions(-)
Title: Functions for University of Auckland Course STATS 201/208 Data
Analysis
Description: A set of functions used in teaching STATS 201/208 Data Analysis at
the University of Auckland. The functions are designed to make parts of R more
accessible to a large undergraduate population who are mostly not statistics
majors.
Author: Brant Deppa [aut] ,
James Curran [aut, cre] ,
Hannah Yun [ctb],
Rachel Fewster [ctb],
Russell Millar [ctb],
Ben Stevenson [ctb],
Andrew Balemi [ctb],
Chris Wild [ctb],
Sophie Jones [ctb],
Dineika Chandra [ctb],
Brendan McArdle [ctb]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between s20x versions 3.2.2 dated 2026-01-14 and 3.3.0 dated 2026-07-01
DESCRIPTION | 25 MD5 | 320 +++++++---- NAMESPACE | 227 +++++--- NEWS.md |only R/autocor.plot.R | 83 +-- R/boxqq.r | 103 --- R/casestudy.R | 137 +++-- R/ciReg.R | 58 +- R/cooks20x.R | 77 +- R/crosstabs.R | 168 +++--- R/displayPairs.R | 280 +++++----- R/eovcheck.R | 465 +++++++++++------ R/estimateContrasts.R | 95 +-- R/estimateContrasts1.R | 101 ++- R/estimateContrasts2.R | 107 ++- R/freq1way.r | 307 ++++++----- R/getVersion.R | 33 - R/graphics-parameter-helpers.R |only R/interactionPlots.R | 11 R/internal-predict-helper.R |only R/layout20x.R | 49 - R/levene.test.R | 140 ++--- R/listCaseStudies.R | 107 ++- R/modcheck.R | 135 ---- R/model-diagnostic-helpers.R |only R/modelcheck.R | 328 ++++++++++-- R/multipleComp.R | 113 ++-- R/normcheck.R | 613 ++++++++++++++++++---- R/openCaseStudy.R | 127 +++- R/pairs20x.R | 232 +++++++- R/plotting-engine-helpers.R |only R/predict20x.R | 199 ++++--- R/predictCount.R | 132 ++-- R/predictGLM.R | 173 +++--- R/propslsd.new.R | 121 ++-- R/residPlot.R | 132 ++-- R/rowdistr.r | 675 +++++++++++++++--------- R/rr.r | 21 R/s20x-data.R | 576 ++++++++++++--------- R/s20x-package.R | 21 R/skewness.r | 49 - R/stripqq.r | 100 --- R/summary1way.R | 238 +++++--- R/summary2way.R | 920 +++++++++++++++++----------------- R/summaryStats.R | 393 +++++++------- R/trendscatter.R | 243 ++++---- R/tslm.R |only README.md | 137 +++-- data/airpass.df.rda |binary data/nzalc.df.rda |only data/nzarrivals.df.rda |only inst/case_studies/CS10_3.Rmd | 4 inst/case_studies/CS11_3.Rmd | 6 inst/case_studies/CS12_4.Rmd | 4 inst/case_studies/CS14_3.Rmd | 2 inst/case_studies/CS14_4.Rmd | 2 inst/case_studies/CS15_3.Rmd | 2 inst/case_studies/CS15_4.Rmd | 4 inst/case_studies/CS5_2.Rmd | 6 inst/case_studies/CS6_3.Rmd | 2 inst/case_studies/CS6_4.Rmd | 2 inst/case_studies/CS8_3.Rmd | 2 inst/case_studies/CS9_6.Rmd | 2 inst/extdata/Galton3.csv | 396 +++++++------- man/anova.tslm.Rd |only man/apples.df.Rd | 26 man/arousal.df.Rd | 6 man/autocor.plot.Rd |only man/autocorPlot.Rd | 4 man/beer.df.Rd | 4 man/body.df.Rd | 37 - man/books.df.Rd | 10 man/boxqq.Rd | 28 - man/bursary.df.Rd | 4 man/butterfat.df.Rd | 6 man/camplake.df.Rd | 6 man/captureOptionalName.Rd |only man/casestudy.Rd | 16 man/chalk.df.Rd | 6 man/ciReg.Rd | 2 man/computer.df.Rd | 4 man/cooks20x.Rd | 4 man/course.df.Rd | 30 - man/course2way.df.Rd | 6 man/crosstabs.Rd | 17 man/diamonds.df.Rd | 4 man/displayPairs.Rd | 20 man/drawPlot.Rd |only man/eovcheck.Rd | 52 + man/estimateContrasts.Rd | 38 - man/estimateContrasts1.Rd |only man/estimateContrasts2.Rd |only man/extractTslmErrorSpec.Rd |only man/extractTslmFit.Rd |only man/fire.df.Rd | 6 man/formatTslmAnovaTable.Rd |only man/formatTslmResidualTypeLabel.Rd |only man/freq1way.Rd | 14 man/fruitfly.df.Rd | 4 man/getModelResidualFittedData.Rd |only man/getTslmArParameters.Rd |only man/getTslmCoefficientTable.Rd |only man/getTslmDiagnosticData.Rd |only man/getTslmErrorTerms.Rd |only man/getTslmResidualDf.Rd |only man/getTslmTimeValues.Rd |only man/getVersion.Rd | 6 man/house.df.Rd | 4 man/incomes.df.Rd | 5 man/interactionPlots.Rd | 11 man/isTslmErrorTerm.Rd |only man/lakemary.df.Rd | 4 man/layout20x.Rd | 19 man/listCaseStudies.Rd | 6 man/makeTslmModelData.Rd |only man/matchPlottingEngine.Rd |only man/matchTslmResidualType.Rd |only man/mazda.df.Rd | 4 man/mening.df.Rd | 7 man/mergers.df.Rd | 5 man/modcheck.Rd | 68 -- man/modelcheck.Rd | 82 ++- man/mozart.df.Rd | 6 man/multipleComp.Rd | 15 man/nail.df.Rd | 4 man/normcheck.Rd | 122 +++- man/nzalc.df.Rd |only man/nzarrivals.df.Rd |only man/openCaseStudy.Rd | 18 man/oysters.df.Rd | 8 man/pairs20x.Rd | 30 - man/parseTslmFormula.Rd |only man/peru.df.Rd | 10 man/plotTslmResiduals.Rd |only man/plotTslmTimeResiduals.Rd |only man/predict20x.Rd | 47 + man/predictCount.Rd | 36 - man/predictGLM.Rd | 35 - man/prepCrosstabList.Rd |only man/print.s20xModelcheck_ggplot2.Rd |only man/print.s20xNormcheck_ggplot2.Rd |only man/printOutput.Rd |only man/propslsd.new.Rd | 3 man/rain.df.Rd | 6 man/removeTslmErrorTerms.Rd |only man/requirePlottingPackage.Rd |only man/requireSuggestedPackage.Rd |only man/residPlot.Rd | 6 man/resolveCaseStudyDestinationDir.Rd |only man/resolveCaseStudyOutputArgs.Rd |only man/rowdistr.Rd | 16 man/rr.Rd | 2 man/s20x-package.Rd | 18 man/s20x_ggplot2_base_theme.Rd |only man/saveGraphicsParameters.Rd |only man/seeds.df.Rd | 6 man/sentenceCase.Rd |only man/sheep.df.Rd | 9 man/skewness.Rd | 4 man/skulls.df.Rd | 4 man/snapper.df.Rd | 9 man/soyabean.df.Rd | 6 man/stripqq.Rd | 35 - man/summary1way.Rd | 31 - man/summary2way.Rd | 41 - man/summaryStats.Rd | 60 +- man/teach.df.Rd | 6 man/technitron.df.Rd | 16 man/thyroid.df.Rd | 8 man/toothpaste.df.Rd | 4 man/trendscatter.Rd | 7 man/tslm.Rd |only man/zoo.df.Rd | 12 tests |only 174 files changed, 6011 insertions(+), 4209 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-16 1.1.3
2022-08-06 1.1.2
2021-03-31 1.1.1
2021-01-28 1.1
2020-12-07 1.0