Title: Call MHCnuggets
Description: MHCnuggets (<https://github.com/KarchinLab/mhcnuggets>) is a Python
tool to predict MHC class I and MHC class II epitopes.
This package allows one to call MHCnuggets from R.
Author: Richel J.C. Bilderbeek [aut, cre] ,
Joshua van Waardenberg [ctb]
Maintainer: Richel J.C. Bilderbeek <rjcbilderbeek@gmail.com>
Diff between mhcnuggetsr versions 1.1 dated 2020-11-04 and 1.2.6 dated 2026-07-04
mhcnuggetsr-1.1/mhcnuggetsr/R/mhcnuggetsr.R |only mhcnuggetsr-1.1/mhcnuggetsr/man/figures/TravisCI.png |only mhcnuggetsr-1.1/mhcnuggetsr/man/get_pip_version.Rd |only mhcnuggetsr-1.1/mhcnuggetsr/man/mhcnuggetsr.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/DESCRIPTION | 25 mhcnuggetsr-1.2.6/mhcnuggetsr/MD5 | 159 +-- mhcnuggetsr-1.2.6/mhcnuggetsr/NAMESPACE | 12 mhcnuggetsr-1.2.6/mhcnuggetsr/R/check_ba_models.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/check_file_exists.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/check_mhc.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/check_mhc_class.R | 1 mhcnuggetsr-1.2.6/mhcnuggetsr/R/check_mhcnuggets_installation.R | 24 mhcnuggetsr-1.2.6/mhcnuggetsr/R/check_mhcnuggets_options.R | 25 mhcnuggetsr-1.2.6/mhcnuggetsr/R/check_mhcnuggets_url.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/check_mhcnuggetsr_folder.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/check_verbose.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/create_mhcnuggets_options.R | 14 mhcnuggetsr-1.2.6/mhcnuggetsr/R/create_test_mhcnuggets_options.R | 14 mhcnuggetsr-1.2.6/mhcnuggetsr/R/default_params_doc.R | 20 mhcnuggetsr-1.2.6/mhcnuggetsr/R/downgrade_pip.R | 11 mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_default_mhcnuggets_folder.R | 11 mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_default_mhcnuggetsr_folder.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_default_orm_folder_name.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_default_ormr_folder_name.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_default_python_version.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_example_filename.R | 17 mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_example_filenames.R | 13 mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_installed_python_packages.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_mhc_1_haplotypes.R | 8 mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_mhc_2_haplotypes.R | 10 mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_mhcnuggets_version.R | 11 mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_pip_version.R | 17 mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_python_package_versions.R | 6 mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_trained_mhc_1_haplotypes.R | 42 mhcnuggetsr-1.2.6/mhcnuggetsr/R/get_trained_mhc_2_haplotypes.R | 41 mhcnuggetsr-1.2.6/mhcnuggetsr/R/install_mhcnuggets.R | 70 - mhcnuggetsr-1.2.6/mhcnuggetsr/R/install_pip.R | 26 mhcnuggetsr-1.2.6/mhcnuggetsr/R/is_mhcnuggets_installed.R | 6 mhcnuggetsr-1.2.6/mhcnuggetsr/R/is_pip_installed.R | 5 mhcnuggetsr-1.2.6/mhcnuggetsr/R/is_python_package_installed.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/mhcnuggets_options_to_text.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/mhcnuggetsr-package.R |only mhcnuggetsr-1.2.6/mhcnuggetsr/R/mhcnuggetsr_report.R | 50 - mhcnuggetsr-1.2.6/mhcnuggetsr/R/mhcnuggetsr_self_test.R | 12 mhcnuggetsr-1.2.6/mhcnuggetsr/R/predict_ic50.R | 25 mhcnuggetsr-1.2.6/mhcnuggetsr/R/predict_ic50_from_file.R | 143 ++ mhcnuggetsr-1.2.6/mhcnuggetsr/R/predict_ic50s.R | 11 mhcnuggetsr-1.2.6/mhcnuggetsr/R/set_is_mhcnuggets_installed.R | 24 mhcnuggetsr-1.2.6/mhcnuggetsr/R/set_pip_version.R | 20 mhcnuggetsr-1.2.6/mhcnuggetsr/R/to_mhcnuggets_name.R | 2 mhcnuggetsr-1.2.6/mhcnuggetsr/R/uninstall_mhcnuggets.R | 28 mhcnuggetsr-1.2.6/mhcnuggetsr/R/uninstall_pip.R | 13 mhcnuggetsr-1.2.6/mhcnuggetsr/R/upgrade_pip.R | 18 mhcnuggetsr-1.2.6/mhcnuggetsr/build/vignette.rds |binary mhcnuggetsr-1.2.6/mhcnuggetsr/inst/doc/demo.R | 58 - mhcnuggetsr-1.2.6/mhcnuggetsr/inst/doc/demo.Rmd | 18 mhcnuggetsr-1.2.6/mhcnuggetsr/inst/doc/demo.html | 492 ++++------ mhcnuggetsr-1.2.6/mhcnuggetsr/man/check_ba_models.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/check_file_exists.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/check_mhc.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/check_mhcnuggets_installation.Rd | 15 mhcnuggetsr-1.2.6/mhcnuggetsr/man/check_mhcnuggets_url.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/check_mhcnuggetsr_folder.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/check_verbose.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/create_mhcnuggets_options.Rd | 13 mhcnuggetsr-1.2.6/mhcnuggetsr/man/create_test_mhcnuggets_options.Rd | 13 mhcnuggetsr-1.2.6/mhcnuggetsr/man/default_params_doc.Rd | 24 mhcnuggetsr-1.2.6/mhcnuggetsr/man/figures/GitHubActions.png |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_default_mhcnuggets_folder.Rd | 15 mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_default_mhcnuggetsr_folder.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_default_orm_folder_name.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_default_ormr_folder_name.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_default_python_version.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_example_filename.Rd | 11 mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_example_filenames.Rd | 15 mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_mhc_1_haplotypes.Rd | 15 mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_mhc_2_haplotypes.Rd | 15 mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_mhcnuggets_version.Rd | 15 mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_python_package_versions.Rd | 6 mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_trained_mhc_1_haplotypes.Rd | 15 mhcnuggetsr-1.2.6/mhcnuggetsr/man/get_trained_mhc_2_haplotypes.Rd | 15 mhcnuggetsr-1.2.6/mhcnuggetsr/man/install_mhcnuggets.Rd | 9 mhcnuggetsr-1.2.6/mhcnuggetsr/man/install_pip.Rd | 9 mhcnuggetsr-1.2.6/mhcnuggetsr/man/is_mhcnuggets_installed.Rd | 13 mhcnuggetsr-1.2.6/mhcnuggetsr/man/is_pip_installed.Rd | 4 mhcnuggetsr-1.2.6/mhcnuggetsr/man/mhcnuggets_options_to_text.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/mhcnuggetsr-package.Rd |only mhcnuggetsr-1.2.6/mhcnuggetsr/man/mhcnuggetsr_report.Rd | 15 mhcnuggetsr-1.2.6/mhcnuggetsr/man/mhcnuggetsr_self_test.Rd | 14 mhcnuggetsr-1.2.6/mhcnuggetsr/man/predict_ic50.Rd | 9 mhcnuggetsr-1.2.6/mhcnuggetsr/man/predict_ic50_from_file.Rd | 5 mhcnuggetsr-1.2.6/mhcnuggetsr/man/set_is_mhcnuggets_installed.Rd | 10 mhcnuggetsr-1.2.6/mhcnuggetsr/man/set_pip_version.Rd | 7 mhcnuggetsr-1.2.6/mhcnuggetsr/man/uninstall_mhcnuggets.Rd | 9 mhcnuggetsr-1.2.6/mhcnuggetsr/man/upgrade_pip.Rd | 5 mhcnuggetsr-1.2.6/mhcnuggetsr/vignettes/demo.Rmd | 18 96 files changed, 990 insertions(+), 826 deletions(-)
Title: Compute Measures of Foreign Policy Similarity/Agreement
Description: Provides functions for calculating various measures of foreign
policy similarity or association commonly used in the study of international
relations. These include Signorino and Ritter's S statistic (weighted and
unweighted), Benati and Capurri's chance-corrected S statistic (A), Cohen's
weighted kappa, Scott's pi, and Kendall's tau-b. The package facilitates
the generation of dyadic similarity scores for empirical analyses and can
also serve as an educational resource for understanding how such measures
are calculated.
Author: Steven Miller [aut, cre]
Maintainer: Steven Miller <steve@svmiller.com>
Diff between fpsim versions 0.1.0 dated 2025-08-18 and 0.2.0 dated 2026-07-04
fpsim-0.1.0/fpsim/inst/scripts/1-fpsim-alliances-s-unweighted.R |only fpsim-0.1.0/fpsim/inst/scripts/1-fpsim-alliances-s-unweighted.log |only fpsim-0.1.0/fpsim/inst/scripts/1-fpsim-alliances-s-weighted.log |only fpsim-0.1.0/fpsim/inst/scripts/1-fpsim-alliances.log |only fpsim-0.1.0/fpsim/inst/scripts/2-fpsim-alliances-s-weighted.R |only fpsim-0.1.0/fpsim/inst/scripts/2-fpsim-alliances-s-weighted.log |only fpsim-0.1.0/fpsim/inst/scripts/3-fpsim-alliances-pkt.R |only fpsim-0.1.0/fpsim/inst/scripts/3-fpsim-alliances-pkt.log |only fpsim-0.2.0/fpsim/DESCRIPTION | 18 - fpsim-0.2.0/fpsim/MD5 | 47 ++ fpsim-0.2.0/fpsim/NAMESPACE | 4 fpsim-0.2.0/fpsim/NEWS.md | 8 fpsim-0.2.0/fpsim/R/bcai.R |only fpsim-0.2.0/fpsim/R/cohenk.R | 3 fpsim-0.2.0/fpsim/R/data.R | 24 + fpsim-0.2.0/fpsim/R/download.fpsim.data.R |only fpsim-0.2.0/fpsim/R/srs.R | 159 ++++++---- fpsim-0.2.0/fpsim/build |only fpsim-0.2.0/fpsim/data/bencapex.rda |only fpsim-0.2.0/fpsim/inst/scripts/create-fpsim-data.sh |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-a-unweighted.R |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-a-unweighted.log |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-a-weighted.R |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-a-weighted.log |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-pk.R |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-pk.log |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-s-unweighted.R |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-s-unweighted.log |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-s-weighted.R |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-s-weighted.log |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-taub.R |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-alliances-taub.log |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-votes-a.R |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-votes-a.log |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-votes-pk.R |only fpsim-0.2.0/fpsim/inst/scripts/fpsim-votes-pk.log |only fpsim-0.2.0/fpsim/inst/scripts/make-fpsim.R |only fpsim-0.2.0/fpsim/man/bcai.Rd |only fpsim-0.2.0/fpsim/man/bencapex.Rd |only fpsim-0.2.0/fpsim/man/download.fpsim.data.Rd |only fpsim-0.2.0/fpsim/man/srs.Rd | 52 +-- 41 files changed, 217 insertions(+), 98 deletions(-)
Title: Runs Allelematch Regression Tests
Description: Automates regression testing of package 'allelematch'. Over
2500 tests cover all functions in 'allelematch', reproduce the
examples from the documentation, and include negative tests. The
implementation is based on 'testthat'.
Author: Department of Wildlife, Fish and Environmental Studies at Swedish
University of Agricultural Sciences [cph],
Goeran Spong [cph] ,
Paul Galpern [ctb] ,
Torvald Staxler [aut, cre]
Maintainer: Torvald Staxler <torvald.staxler@telia.com>
Diff between amregtest versions 1.0.10 dated 2026-06-28 and 1.1.0 dated 2026-07-04
amregtest-1.0.10/amregtest/data/amExample1.R |only amregtest-1.0.10/amregtest/data/amExample2.R |only amregtest-1.0.10/amregtest/data/amExample3.R |only amregtest-1.0.10/amregtest/data/amExample4.R |only amregtest-1.0.10/amregtest/data/amExample5.R |only amregtest-1.0.10/amregtest/tests/testthat/_snaps/allelematch_3-amPairwise_print.md |only amregtest-1.0.10/amregtest/tests/testthat/_snaps/allelematch_4-amCluster_print.md |only amregtest-1.0.10/amregtest/tests/testthat/_snaps/allelematch_6-amUnique_print.md |only amregtest-1.1.0/amregtest/DESCRIPTION | 8 +- amregtest-1.1.0/amregtest/MD5 | 35 +++++----- amregtest-1.1.0/amregtest/NEWS.md | 11 +++ amregtest-1.1.0/amregtest/data/amExample1.RData |only amregtest-1.1.0/amregtest/data/amExample2.RData |only amregtest-1.1.0/amregtest/data/amExample3.RData |only amregtest-1.1.0/amregtest/data/amExample4.RData |only amregtest-1.1.0/amregtest/data/amExample5.RData |only amregtest-1.1.0/amregtest/inst/WORDLIST | 1 amregtest-1.1.0/amregtest/tests/testthat/_snaps/2.5 |only amregtest-1.1.0/amregtest/tests/testthat/_snaps/2.6 |only amregtest-1.1.0/amregtest/tests/testthat/helper.R | 8 ++ amregtest-1.1.0/amregtest/tests/testthat/test-allelematch_1-amDataset.R | 21 +++++- amregtest-1.1.0/amregtest/tests/testthat/test-allelematch_3-amPairwise_print.R | 16 ++-- amregtest-1.1.0/amregtest/tests/testthat/test-allelematch_4-amCluster_print.R | 17 +++- amregtest-1.1.0/amregtest/tests/testthat/test-allelematch_6-amUnique_print.R | 17 +++- 24 files changed, 93 insertions(+), 41 deletions(-)
Title: 'HTML' Element Construction
Description: Provides a deterministic, framework-agnostic Domain-Specific Language for building
'HTML' nodes and rendering them to a string.
Author: Kennedy Mwavu [aut, cre] ,
Sigflux [cph, fnd]
Maintainer: Kennedy Mwavu <mwavukennedy@gmail.com>
Diff between hypertext versions 1.3.0 dated 2026-06-21 and 1.4.0 dated 2026-07-04
DESCRIPTION | 9 - MD5 | 10 - R/tags.R | 130 +++++++++++++++++++--- README.md | 236 +++++++++++++++++++++-------------------- tests/testthat/test-print.R | 97 ++++++++++++++++ tests/testthat/test-tag_list.R | 28 ++++ 6 files changed, 362 insertions(+), 148 deletions(-)
Title: High-Performance HTTP Server for R via 'Drogon'
Description: Provides an 'R' interface to the 'Drogon' high-performance
'C++' 'HTTP' server framework
(<https://github.com/drogonframework/drogon>). Offers a 'plumber'-style
application programming interface for building 'REST' services from
'R' with substantially higher throughput, including streaming
responses and full-duplex 'WebSocket' endpoints.
Author: Yuri Baramykov [aut, cre] ,
An Tao [ctb, cph] ,
Shuo Chen [ctb, cph] ,
Baptiste Lepilleur [ctb, cph] ,
Christopher Dunn [ctb] ,
JsonCpp Contributors [ctb, cph] ,
Bert Belder [ctb, cph] ),
mman-win32 contributors [ctb, cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between drogonR versions 0.1.6 dated 2026-05-13 and 0.1.8 dated 2026-07-04
DESCRIPTION | 12 MD5 | 73 ++++- NAMESPACE | 11 NEWS.md | 27 ++ R/server.R | 37 ++ R/websocket.R |only R/websocket_client.R |only README.md | 56 ++++ inst/examples/bench-ws-echo.R |only inst/include/drogonR.h | 101 ++++++++ man/dr_ws.Rd |only man/dr_ws_broadcast.Rd |only man/dr_ws_client_close.Rd |only man/dr_ws_client_send.Rd |only man/dr_ws_close.Rd |only man/dr_ws_connect.Rd |only man/dr_ws_cpp.Rd |only man/dr_ws_join.Rd |only man/dr_ws_leave.Rd |only man/dr_ws_send.Rd |only man/dr_ws_shutdown.Rd |only src/Makevars.in | 3 src/drogon/lib/inc/drogon/orm/SqlBinder.h | 5 src/drogon/trantor/utils/TaskQueue.h | 2 src/drogon_server.cpp | 98 ++++++- src/json_writer.cpp | 13 - src/r_bridge.cpp | 12 src/r_bridge.h | 124 ++++++++++ src/r_dispatcher.cpp | 10 src/stream_session.cpp | 41 ++- src/ws_client.cpp |only src/ws_session.cpp |only tests/testthat.R | 12 tests/testthat/helper-ws-client.R |only tests/testthat/helper-ws.R |only tests/testthat/server-script-cpp.R | 14 - tests/testthat/test-ws-batching.R |only tests/testthat/test-ws-client-validation.R |only tests/testthat/test-ws-client.R |only tests/testthat/test-ws-cpp.R |only tests/testthat/test-ws-happy.R |only tests/testthat/test-ws-room.R |only tests/testthat/test-ws-routes.R |only tests/testthat/test-ws-validation.R |only tests/testthat/ws-teardown-script.R |only tools/bench/results/drogonR-cpp-json-20260704-184951.txt |only tools/bench/results/drogonR-cpp-server-20260704-184951.log |only tools/bench/results/drogonR-cpp-text-20260704-184951.txt |only tools/bench/results/drogonR-native-json-20260704-184951.txt |only tools/bench/results/drogonR-native-server-20260704-184951.log |only tools/bench/results/drogonR-native-text-20260704-184951.txt |only tools/bench/results/drogonR-shim-json-20260704-184951.txt |only tools/bench/results/drogonR-shim-server-20260704-184951.log |only tools/bench/results/drogonR-shim-text-20260704-184951.txt |only tools/bench/results/plumber-json-20260704-184951.txt |only tools/bench/results/plumber-server-20260704-184951.log |only tools/bench/results/plumber-text-20260704-184951.txt |only 57 files changed, 584 insertions(+), 67 deletions(-)
Title: Staggered DiD Tools: Event Studies and ATT Aggregation
Description: Provides tools for difference-in-differences (DiD) estimation and
visualization with staggered adoption. Includes run_es() for event-study
curves (dynamic effects by relative time) and calc_att() for aggregated
ATT estimation (overall, by cohort, by calendar time). Supports multiple
modern estimators: Callaway-Sant'Anna (2021), Sun-Abraham (2021),
Borusyak-Jaravel-Spiess (2024), Wooldridge TWM, and Deb et al. FLEX.
Author: Yosuke Abe [aut, cre]
Maintainer: Yosuke Abe <yosuke.abe0507@gmail.com>
Diff between fixes versions 0.11.2 dated 2026-06-11 and 0.12.0 dated 2026-07-04
DESCRIPTION | 11 MD5 | 57 +- NAMESPACE | 2 NEWS.md | 82 +++ R/RcppExports.R | 98 +++ R/calc_att.R | 622 ++++++++++++------------ R/contamination_weights_sa.R | 45 + R/estimators_bjs.R | 456 +++++++++--------- R/estimators_cs.R | 452 +++++++++--------- R/estimators_flex.R | 46 + R/estimators_sa.R | 484 ++++++++++--------- R/estimators_twm.R | 49 + R/fe_ols.R |only R/fe_solver.R |only R/run_did.R | 772 +++++++++++++++---------------- R/run_es.R | 95 +++ R/tidy-att_result.R |only build/vignette.rds |binary inst/doc/fixes-intro.html | 4 man/calc_att.Rd | 5 man/glance.att_result.Rd |only man/run_did.Rd | 4 man/run_es.Rd | 32 + man/tidy.att_result.Rd |only src/Makevars | 3 src/Makevars.win | 3 src/RcppExports.cpp | 62 ++ src/demean_kway.cpp |only src/fe_ols_kernels.cpp |only src/fe_solver.cpp |only tests/testthat/test-fe-ols-kernels.R |only tests/testthat/test-fe-ols.R |only tests/testthat/test-fe-solver.R |only tests/testthat/test-rel-time.R |only tests/testthat/test-run-did-nobs.R |only tests/testthat/test-sparse-diagnostics.R |only tests/testthat/test-tidy-att.R |only 37 files changed, 1953 insertions(+), 1431 deletions(-)
Title: Install 'Futureverse' in One Go
Description: The 'Futureverse' is a set of packages for parallel and distributed processing with the 'future' package at its core (Bengtsson, 2021, <doi:10.32614/RJ-2021-048>). Another notable component is the 'futurize' package (Bengtsson, 2026, <doi:10.48550/arXiv.2601.17578>) for turning common sequential calls into parallel ones via a single function futurize(). Similarly, the progressify() of the 'progressify' package makes common calls to report of progress. This package is designed to make it easy to install common 'Futureverse' packages in a single step. This package is intended for end-users, interactive use, and R scripts. Packages must not list it as a dependency - instead, explicitly declare each 'Futureverse' package as a dependency as needed.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between futureverse versions 0.2.0 dated 2026-01-28 and 0.3.0 dated 2026-07-04
DESCRIPTION | 23 ++++++++++++++--------- MD5 | 15 ++++++++------- NEWS.md | 7 +++++++ R/futureverse.R | 1 + R/toc.R |only README.md | 24 +++++++++++++++++++++--- build/partial.rdb |binary inst/CITATION | 5 ++--- man/futureverse-package.Rd | 11 +++++++++-- 9 files changed, 62 insertions(+), 24 deletions(-)
Title: Download Mexico City Pollution, Wind, and Temperature Data
Description: Tools for downloading hourly averages, daily maximums and
minimums from each of the pollution, wind, and temperature measuring
stations or geographic zones in the Mexico City metro area. The
package also includes the locations of each of the stations and zones.
See <http://aire.cdmx.gob.mx/> for more information.
Author: Diego Valle-Jones [aut, cre]
Maintainer: Diego Valle-Jones <diego@diegovalle.net>
Diff between aire.zmvm versions 1.0.1 dated 2026-03-05 and 1.0.2 dated 2026-07-04
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 7 +++++++ R/get_station_data.R | 2 +- man/aire.zmvm-package.Rd | 5 +++++ man/convert_to_imeca.Rd | 4 ++-- man/convert_to_index.Rd | 4 ++-- man/get_latest_imeca.Rd | 6 +++--- man/get_station_data.Rd | 4 ++-- man/get_station_imeca.Rd | 6 +++--- man/get_station_month_data.Rd | 4 ++-- man/get_zone_imeca.Rd | 6 +++--- man/stations.Rd | 2 +- man/zones.Rd | 2 +- 14 files changed, 49 insertions(+), 37 deletions(-)
Title: Initialization of Numerical Optimization
Description: Analysis of the initialization for numerical optimization of
real-valued functions, particularly likelihood functions of statistical
models. See <https://loelschlaeger.de/ino/> for more details.
Author: Lennart Oelschlaeger [aut, cre] ,
Marius Oetting [aut] ,
Dietmar Bauer [ctb]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between ino versions 1.2.0 dated 2025-10-26 and 1.2.1 dated 2026-07-04
ino-1.2.0/ino/vignettes/figures |only ino-1.2.1/ino/DESCRIPTION | 8 ino-1.2.1/ino/MD5 | 33 - ino-1.2.1/ino/NAMESPACE | 2 ino-1.2.1/ino/NEWS.md | 18 ino-1.2.1/ino/R/autoplot.R | 32 + ino-1.2.1/ino/R/nop.R | 215 +++++++-- ino-1.2.1/ino/README.md | 8 ino-1.2.1/ino/build/vignette.rds |binary ino-1.2.1/ino/inst/doc/ino.R | 45 + ino-1.2.1/ino/inst/doc/ino.Rmd | 51 +- ino-1.2.1/ino/inst/doc/ino.html | 260 +++++------ ino-1.2.1/ino/man/Nop.Rd | 743 ++++++++++++++++---------------- ino-1.2.1/ino/man/autoplot.Nop.Rd | 9 ino-1.2.1/ino/man/ino-package.Rd | 1 ino-1.2.1/ino/tests/testthat/test-nop.R | 78 +++ ino-1.2.1/ino/vignettes/ino.Rmd | 51 +- 17 files changed, 936 insertions(+), 618 deletions(-)
Title: S7 Data Structures for Diffusion MRI Tractography
Description: Provides three S7 classes — streamline, bundle, and bundle_set —
for representing diffusion MRI tractography data in R, together with a
concise set of methods for computing shape descriptors (arc-length,
curvature, torsion, sinuosity), the Hausdorff distance between streamlines,
arc-length reparametrization of streamlines and bundles onto uniform grids,
combination of streamlines or bundles into a single bundle, combination of
bundles from multiple subjects or sessions into a bundle_set, and coercion
to and from the dwiFiber S4 class of the 'dti' package. See Dell'Acqua, F.,
Descoteaux, M. and Leemans, A. (2024) "Handbook of Diffusion MR Tractography"
<doi:10.1016/C2018-0-02520-7> for more about the mathematical and computational
underpinnings of diffusion MRI tractography.
Author: Aymeric Stamm [aut, cre]
Maintainer: Aymeric Stamm <aymeric.stamm@cnrs.fr>
Diff between fiber versions 0.1.2 dated 2026-05-30 and 0.2.0 dated 2026-07-04
fiber-0.1.2/fiber/man/n_points.Rd |only fiber-0.2.0/fiber/DESCRIPTION | 11 fiber-0.2.0/fiber/MD5 | 83 +- fiber-0.2.0/fiber/NEWS.md | 62 + fiber-0.2.0/fiber/R/bind.R |only fiber-0.2.0/fiber/R/bundle-set.R |only fiber-0.2.0/fiber/R/bundle.R | 382 ++++------ fiber-0.2.0/fiber/R/coerce.R | 144 ++- fiber-0.2.0/fiber/R/parametrize.R | 275 +------ fiber-0.2.0/fiber/R/shape.R | 171 ++-- fiber-0.2.0/fiber/R/streamline.R | 143 ++- fiber-0.2.0/fiber/R/utils.R | 115 +++ fiber-0.2.0/fiber/README.md | 88 +- fiber-0.2.0/fiber/inst/tinytest/test_bundle.R | 135 ++- fiber-0.2.0/fiber/inst/tinytest/test_bundle_set.R | 114 ++ fiber-0.2.0/fiber/inst/tinytest/test_coerce.R | 25 fiber-0.2.0/fiber/inst/tinytest/test_parametrize.R | 78 +- fiber-0.2.0/fiber/inst/tinytest/test_shape.R | 28 fiber-0.2.0/fiber/inst/tinytest/test_streamline.R | 112 +- fiber-0.2.0/fiber/man/add_shape_descriptors-fiber-bundle-method.Rd | 10 fiber-0.2.0/fiber/man/add_shape_descriptors.Rd | 26 fiber-0.2.0/fiber/man/as_bundle.Rd | 7 fiber-0.2.0/fiber/man/as_bundle_set.Rd | 9 fiber-0.2.0/fiber/man/as_dwifiber.Rd | 15 fiber-0.2.0/fiber/man/as_streamline.Rd | 3 fiber-0.2.0/fiber/man/bind_bundle_sets.Rd | 30 fiber-0.2.0/fiber/man/bind_bundles.Rd | 19 fiber-0.2.0/fiber/man/bundle.Rd | 77 +- fiber-0.2.0/fiber/man/bundle_set.Rd | 60 - fiber-0.2.0/fiber/man/compute_hausdorff_distance-fiber-bundle-method.Rd | 8 fiber-0.2.0/fiber/man/compute_hausdorff_distance-fiber-streamline-method.Rd | 8 fiber-0.2.0/fiber/man/compute_hausdorff_distance.Rd | 8 fiber-0.2.0/fiber/man/get_curvature.Rd | 4 fiber-0.2.0/fiber/man/get_curvilinear_length.Rd | 8 fiber-0.2.0/fiber/man/get_euclidean_length.Rd | 4 fiber-0.2.0/fiber/man/get_sinuosity.Rd | 4 fiber-0.2.0/fiber/man/get_torsion.Rd | 4 fiber-0.2.0/fiber/man/is_bundle.Rd | 3 fiber-0.2.0/fiber/man/is_bundle_set.Rd | 8 fiber-0.2.0/fiber/man/is_streamline.Rd | 7 fiber-0.2.0/fiber/man/reparametrize-fiber-bundle-method.Rd | 26 fiber-0.2.0/fiber/man/reparametrize-fiber-streamline-method.Rd | 16 fiber-0.2.0/fiber/man/reparametrize.Rd | 18 fiber-0.2.0/fiber/man/streamline.Rd | 66 - 44 files changed, 1357 insertions(+), 1057 deletions(-)
Title: Shuffled Complex Evolution Algorithm for Optimization
Description: Provides an 'R' interface to a 'Rust' implementation of the
Shuffled Complex Evolution - University of Arizona (SCE-UA) global
optimization algorithm (Duan et al., 1992). SCE-UA combines simplex search, competitive
evolution, and complex shuffling to solve nonlinear, non-convex,
continuous parameter estimation problems. The method is commonly used
for calibrating hydrological and environmental models and follows the
algorithm proposed by Duan et al. (1992) <doi:10.1029/91WR02985>.
Author: Anatoly Tsyplenkov [aut, cre, cph]
Maintainer: Anatoly Tsyplenkov <atsyplenkov@fastmail.com>
Diff between sceua versions 0.1.0 dated 2026-06-26 and 0.1.1 dated 2026-07-04
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- README.md | 3 +-- src/rust/Cargo.lock | 4 ++-- src/rust/Cargo.toml | 6 +++--- src/rust/vendor.tar.xz |binary 6 files changed, 15 insertions(+), 16 deletions(-)
Title: Network-Based Analysis of Gene Expression Perturbations
Description: Network-centric framework for integrative analysis of
high-throughput gene expression data using user-supplied gene-gene
interaction graphs. Constructs seed-centered multi-generation networks
constrained by expression correlations and simulates expression
perturbation scenarios via regression-based prediction (van Dam, 2018).
Author: Ehsan Keramati [aut, cre]
Maintainer: Ehsan Keramati <ehsan.keramati14@gmail.com>
Diff between ExpressionCellNet versions 0.1.1 dated 2026-03-04 and 0.1.2 dated 2026-07-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- man/ExpressionCellNet-package.Rd | 19 +++++++++++++++++-- man/ExpressionCellNet.Rd | 7 +++++++ 4 files changed, 30 insertions(+), 8 deletions(-)
More information about ExpressionCellNet at CRAN
Permanent link
Title: Fast Kriging and Geostatistics on Grids with Kronecker
Covariance
Description: Geostatistical modeling and kriging with
gridded data using spatially separable covariance functions (Kronecker
covariances). Kronecker products in these models provide shortcuts for
solving large matrix problems in likelihood and conditional mean,
making 'snapKrig' computationally efficient with large grids. The package
supplies its own S3 grid object class, and a host of methods including
plot, print, Ops, square bracket replace/assign, and more. Our computational
methods are described in Koch, Lele, Lewis (2020) <doi:10.7939/r3-g6qb-bq70>.
Author: Dean Koch [aut, cre, cph]
Maintainer: Dean Koch <deankoch@gmail.com>
Diff between snapKrig versions 0.0.2 dated 2023-05-06 and 0.0.3 dated 2026-07-04
snapKrig-0.0.2/snapKrig/man/Summary.sk.Rd |only snapKrig-0.0.3/snapKrig/DESCRIPTION | 23 snapKrig-0.0.3/snapKrig/LICENSE | 2 snapKrig-0.0.3/snapKrig/MD5 | 136 snapKrig-0.0.3/snapKrig/NAMESPACE | 114 snapKrig-0.0.3/snapKrig/NEWS.md | 70 snapKrig-0.0.3/snapKrig/R/sk.R | 1036 ++--- snapKrig-0.0.3/snapKrig/R/sk_estim.R | 1927 ++++----- snapKrig-0.0.3/snapKrig/R/sk_export.R | 1118 ++--- snapKrig-0.0.3/snapKrig/R/sk_index.R | 1388 +++---- snapKrig-0.0.3/snapKrig/R/sk_methods.R | 1360 +++--- snapKrig-0.0.3/snapKrig/R/sk_model.R | 1065 ++--- snapKrig-0.0.3/snapKrig/R/sk_pars.R | 1082 ++--- snapKrig-0.0.3/snapKrig/R/sk_plot.R | 1944 +++++----- snapKrig-0.0.3/snapKrig/R/sk_sample.R | 1194 +++--- snapKrig-0.0.3/snapKrig/R/sk_var.R | 1682 ++++---- snapKrig-0.0.3/snapKrig/R/snapKrig.R | 102 snapKrig-0.0.3/snapKrig/README.md | 374 + snapKrig-0.0.3/snapKrig/build/vignette.rds |binary snapKrig-0.0.3/snapKrig/inst/doc/snapKrig_introduction.R | 598 +-- snapKrig-0.0.3/snapKrig/inst/doc/snapKrig_introduction.Rmd | 1291 +++--- snapKrig-0.0.3/snapKrig/inst/doc/snapKrig_introduction.html | 1877 ++++----- snapKrig-0.0.3/snapKrig/man/Math.sk.Rd | 52 snapKrig-0.0.3/snapKrig/man/Ops.sk.Rd | 86 snapKrig-0.0.3/snapKrig/man/anyNA.sk.Rd | 52 snapKrig-0.0.3/snapKrig/man/as.integer.sk.Rd | 48 snapKrig-0.0.3/snapKrig/man/as.matrix.sk.Rd | 60 snapKrig-0.0.3/snapKrig/man/as.vector.sk.Rd | 54 snapKrig-0.0.3/snapKrig/man/dim.sk.Rd | 42 snapKrig-0.0.3/snapKrig/man/figures/README-intro_down_plot-1.png |binary snapKrig-0.0.3/snapKrig/man/figures/README-intro_sim-1.png |binary snapKrig-0.0.3/snapKrig/man/figures/README-preview-1.png |binary snapKrig-0.0.3/snapKrig/man/is.na.sk.Rd | 44 snapKrig-0.0.3/snapKrig/man/length.sk.Rd | 44 snapKrig-0.0.3/snapKrig/man/mean.sk.Rd | 48 snapKrig-0.0.3/snapKrig/man/sk.Rd | 14 snapKrig-0.0.3/snapKrig/man/sk_GLS.Rd | 388 + snapKrig-0.0.3/snapKrig/man/sk_LL.Rd | 447 +- snapKrig-0.0.3/snapKrig/man/sk_add_bins.Rd | 4 snapKrig-0.0.3/snapKrig/man/sk_bds.Rd | 14 snapKrig-0.0.3/snapKrig/man/sk_cmean.Rd | 95 snapKrig-0.0.3/snapKrig/man/sk_coords.Rd | 4 snapKrig-0.0.3/snapKrig/man/sk_corr.Rd | 16 snapKrig-0.0.3/snapKrig/man/sk_corr_mat.Rd | 8 snapKrig-0.0.3/snapKrig/man/sk_export.Rd | 6 snapKrig-0.0.3/snapKrig/man/sk_fit.Rd | 70 snapKrig-0.0.3/snapKrig/man/sk_kp.Rd | 14 snapKrig-0.0.3/snapKrig/man/sk_mat2vec.Rd | 10 snapKrig-0.0.3/snapKrig/man/sk_nLL.Rd | 16 snapKrig-0.0.3/snapKrig/man/sk_pars.Rd | 14 snapKrig-0.0.3/snapKrig/man/sk_pars_make.Rd | 14 snapKrig-0.0.3/snapKrig/man/sk_pars_update.Rd | 14 snapKrig-0.0.3/snapKrig/man/sk_plot.Rd | 4 snapKrig-0.0.3/snapKrig/man/sk_plot_pars.Rd | 4 snapKrig-0.0.3/snapKrig/man/sk_rescale.Rd | 18 snapKrig-0.0.3/snapKrig/man/sk_sim.Rd | 12 snapKrig-0.0.3/snapKrig/man/sk_snap.Rd | 8 snapKrig-0.0.3/snapKrig/man/sk_sub.Rd | 8 snapKrig-0.0.3/snapKrig/man/sk_sub_find.Rd | 10 snapKrig-0.0.3/snapKrig/man/sk_sub_idx.Rd | 10 snapKrig-0.0.3/snapKrig/man/sk_to_string.Rd | 14 snapKrig-0.0.3/snapKrig/man/sk_toep_mult.Rd | 10 snapKrig-0.0.3/snapKrig/man/sk_var.Rd | 16 snapKrig-0.0.3/snapKrig/man/sk_var_mult.Rd | 12 snapKrig-0.0.3/snapKrig/man/sk_vario_fun.Rd | 4 snapKrig-0.0.3/snapKrig/man/sk_vec2mat.Rd | 10 snapKrig-0.0.3/snapKrig/man/summary.sk.Rd |only snapKrig-0.0.3/snapKrig/tests |only snapKrig-0.0.3/snapKrig/vignettes/snapKrig_introduction.Rmd | 1291 +++--- 69 files changed, 10760 insertions(+), 10732 deletions(-)
Title: Access Forest Ecology Layers for British Columbia in 2001-2018
Description: R-based access to a large set of data variables relevant to forest ecology in British Columbia (BC), Canada. Layers
are in raster format at 100m resolution in the BC Albers projection, hosted at the Federated Research Data Repository (FRDR)
with <doi:10.20383/101.0283>. The collection includes: elevation; biogeoclimatic zone; wildfire; cutblocks; forest attributes from
Hansen et al. (2013) <doi:10.1139/cjfr-2013-0401> and Beaudoin et al. (2017) <doi:10.1139/cjfr-2017-0184>; and rasterized
Forest Insect and Disease Survey (FIDS) maps for a number of insect pest species, all covering the period 2001-2018.
Users supply a polygon or point location in the province of BC, and 'rasterbc' will download the overlapping raster tiles
hosted at FRDR, merging them as needed and returning the result in R as a 'SpatRaster' object. Metadata associated with these
layers, and code for downloading them from their original sources can be found in the 'github' repository
<https://githu [...truncated...]
Author: Dean Koch [aut, cre]
Maintainer: Dean Koch <deankoch@gmail.com>
Diff between rasterbc versions 1.0.2 dated 2023-11-09 and 1.0.3 dated 2026-07-04
rasterbc-1.0.2/rasterbc/vignettes/vignette_pinebeetle_DEVELOPMENT.R |only rasterbc-1.0.3/rasterbc/DESCRIPTION | 16 rasterbc-1.0.3/rasterbc/LICENSE | 4 rasterbc-1.0.3/rasterbc/MD5 | 47 rasterbc-1.0.3/rasterbc/NAMESPACE | 26 rasterbc-1.0.3/rasterbc/NEWS.md | 41 rasterbc-1.0.3/rasterbc/R/data.R | 86 rasterbc-1.0.3/rasterbc/R/datadir_bc.R | 176 - rasterbc-1.0.3/rasterbc/R/findblocks_bc.R | 166 - rasterbc-1.0.3/rasterbc/R/getdata_bc.R | 238 - rasterbc-1.0.3/rasterbc/R/listdata_bc.R | 334 +- rasterbc-1.0.3/rasterbc/R/opendata_bc.R | 292 +- rasterbc-1.0.3/rasterbc/R/utils.R | 380 +- rasterbc-1.0.3/rasterbc/README.md | 224 - rasterbc-1.0.3/rasterbc/build/vignette.rds |binary rasterbc-1.0.3/rasterbc/inst/doc/vignette_intro.Rmd | 605 ++-- rasterbc-1.0.3/rasterbc/inst/doc/vignette_intro.html | 1306 +++++----- rasterbc-1.0.3/rasterbc/man/findblocks_bc.Rd | 138 - rasterbc-1.0.3/rasterbc/man/listdata_bc.Rd | 110 rasterbc-1.0.3/rasterbc/man/metadata_bc.Rd | 84 rasterbc-1.0.3/rasterbc/man/ntspoly_bc.Rd | 50 rasterbc-1.0.3/rasterbc/man/opendata_bc.Rd | 140 - rasterbc-1.0.3/rasterbc/vignettes/vignette_intro.Rmd | 605 ++-- rasterbc-1.0.3/rasterbc/vignettes/vignette_intro.Rmd.orig | 408 +-- rasterbc-1.0.3/rasterbc/vignettes/vignette_intro.md | 606 ++-- 25 files changed, 3043 insertions(+), 3039 deletions(-)
Title: Predict Transmembrane Protein Topology
Description: Proteins reside in either the cell plasma or in the
cell membrane. A membrane protein goes through the
membrane at least once. Given the amino acid sequence of a
membrane protein, the tool
'PureseqTM' (<https://github.com/PureseqTM/pureseqTM_package>,
as described in "Efficient And Accurate Prediction Of Transmembrane
Topology From Amino acid sequence only.", Wang, Qing, et al (2019),
<doi:10.1101/627307>),
can predict the topology of a membrane protein. This package
allows one to use 'PureseqTM' from R.
Author: Richel J.C. Bilderbeek [aut, cre]
Maintainer: Richel J.C. Bilderbeek <rjcbilderbeek@gmail.com>
Diff between pureseqtmr versions 1.4 dated 2023-04-06 and 1.4.2 dated 2026-07-04
pureseqtmr-1.4.2/pureseqtmr/DESCRIPTION | 18 pureseqtmr-1.4.2/pureseqtmr/MD5 | 15 pureseqtmr-1.4.2/pureseqtmr/R/pureseqtmr-package.R |only pureseqtmr-1.4.2/pureseqtmr/build/vignette.rds |binary pureseqtmr-1.4.2/pureseqtmr/inst/doc/demo.R | 2 pureseqtmr-1.4.2/pureseqtmr/inst/doc/demo.html | 244 ++++------ pureseqtmr-1.4.2/pureseqtmr/man/calc_distance_to_tmh_center_from_topology_str.Rd | 3 pureseqtmr-1.4.2/pureseqtmr/man/pureseqtmr-package.Rd |only pureseqtmr-1.4/pureseqtmr/R/pureseqtmr.R |only pureseqtmr-1.4/pureseqtmr/man/figures/TravisCI.png |only pureseqtmr-1.4/pureseqtmr/man/pureseqtmr.Rd |only 11 files changed, 139 insertions(+), 143 deletions(-)
Title: R Interface to 'DuckDB' Database with Spatial Extension
Description: Fast and memory-efficient functions to analyze and manipulate large
spatial datasets. It leverages the fast analytical
capabilities of ‘DuckDB’ and its spatial extension (see
<https://duckdb.org/docs/stable/core_extensions/spatial/overview>)
while maintaining compatibility with R’s spatial data ecosystem to
work with spatial vector data.
Author: Adrian Cidre Gonzalez [aut, cre] ,
Egor Kotov [aut] ,
Rafael H. M. Pereira [aut]
Maintainer: Adrian Cidre Gonzalez <adrian.cidre@gmail.com>
Diff between duckspatial versions 1.2.0 dated 2026-07-02 and 1.2.1 dated 2026-07-04
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NEWS.md | 8 +++++++- R/db_extension.R | 22 +++++++++++++++++++--- R/zzz.R | 2 +- inst/doc/aw_interpolation.html | 4 ++-- inst/doc/benchmark.html | 4 ++-- inst/doc/duckspatial.html | 12 ++++++------ inst/doc/spatial_joins.html | 4 ++-- 9 files changed, 53 insertions(+), 31 deletions(-)
Title: A Versatile Toolkit for Copy Number Variation Relationship Data
Analysis and Visualization
Description: Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
Author: James Dalgleish [aut, cre] ,
Yonghong Wang [aut],
Jack Zhu [aut],
Paul Meltzer [aut, sad]
Maintainer: James Dalgleish <jamesdalg@gmail.com>
Diff between CNVScope versions 3.7.5 dated 2026-07-03 and 3.7.6 dated 2026-07-04
DESCRIPTION | 14 +++++++------- MD5 | 18 +++++++++--------- NAMESPACE | 5 ----- NEWS.md | 9 +++++++++ R/createChromosomalMatrixSet.R | 5 +++-- R/getAnnotationMatrix.R | 9 +++++++-- R/getInterchromosomalInteractivePlot.R | 4 +++- R/importBreakpointBed.R | 6 ++++-- R/rebinGenomicInteractions.R | 5 +++-- R/runCNVScopeShiny.R | 1 - 10 files changed, 45 insertions(+), 31 deletions(-)
Title: A Stochastic Cellular Automaton Engine
Description: An engine for stochastic cellular automata. It provides a high-level
interface to declare a model, which can then be simulated by various backends
(Genin et al. (2023) <doi:10.1101/2023.11.08.566206>).
Author: Alexandre Genin [aut, cre] ,
Guillaume Dupont [aut],
Daniel Valencia [aut],
Mauro Zucconi [aut],
M. Isidora Avila-Thieme [aut],
Sergio A. Navarrete [aut],
Evie A. Wieters [aut]
Maintainer: Alexandre Genin <alexandre.genin@inrae.fr>
Diff between chouca versions 0.1.99 dated 2024-03-07 and 0.1.991 dated 2026-07-04
DESCRIPTION | 13 - MD5 | 22 +- NEWS | 21 ++ README.md | 14 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/chouca-package.R | 36 ++-- inst/doc/chouca-package.html | 320 +++++++++++++++++++------------------- tests/testthat/test-caspr.R | 3 tests/testthat/test-correctness.R | 285 +++++++++++++++++---------------- tests/testthat/test-meanfield.R | 6 tests/testthat/test-substeps.R | 84 +++++---- 12 files changed, 425 insertions(+), 379 deletions(-)
Title: Fast and Unified Synthetic Control Methods
Description: A unified 'Formula' interface to the Synthetic Control Method
(SCM) and related panel-data causal inference estimators: Synthetic
Difference-in-Differences (SDID), Generalized Synthetic Control (GSC),
Matrix Completion (MC), Time-Aware Synthetic Control (TASC), and Synthetic
Interventions (SI), together with an experimental-design variant.
Computational bottlenecks (quadratic programming, singular value
decomposition, and Kalman filtering) are implemented in 'C++' via
'RcppArmadillo'. Methods are described in Abadie, Diamond and Hainmueller
(2010) <doi:10.1198/jasa.2009.ap08746>, Arkhangelsky, Athey, Hirshberg,
Imbens and Wager (2021) <doi:10.1257/aer.20190159>, Xu (2017)
<doi:10.1017/pan.2016.2>, Athey, Bayati, Doudchenko, Imbens and Khosravi
(2021) <doi:10.1080/01621459.2021.1891924>, and Agarwal, Shah and Shen
(2025) <doi:10.1287/opre.2025.1590>.
Author: Yosuke Abe [aut, cre]
Maintainer: Yosuke Abe <yosuke.abe0507@gmail.com>
Diff between coresynth versions 0.2.2 dated 2026-06-26 and 0.2.4 dated 2026-07-04
DESCRIPTION | 6 MD5 | 34 +-- NEWS.md | 62 ++++++ R/gsc.R | 6 R/mc.R | 5 R/scm.R | 11 + R/scm_design.R | 5 R/scm_fit.R | 30 ++- R/sdid.R | 6 R/si.R | 12 - R/tasc.R | 17 + R/utils.R | 63 ++++++ build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 9 inst/doc/coresynth.html | 18 - src/optim.cpp | 24 +- tests/testthat/test-integration.R | 367 ++++++++++++++++++++++++++------------ 18 files changed, 523 insertions(+), 152 deletions(-)