More information about saeproj.multilevel at CRAN
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Title: Soil Database Interface
Description: A collection of functions for reading soil data from U.S. Department of Agriculture Natural Resources Conservation Service (USDA-NRCS) and National Cooperative Soil Survey (NCSS) databases.
Author: Dylan Beaudette [aut] ,
Jay Skovlin [aut],
Stephen Roecker [aut],
Andrew Brown [aut, cre]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Diff between soilDB versions 2.9.1 dated 2026-04-03 and 2.9.2 dated 2026-07-11
DESCRIPTION | 8 MD5 | 564 +- NAMESPACE | 439 +- NEWS.md | 1918 ++++----- R/AAAA.R | 206 - R/ISSR800.R | 543 +- R/KSSL_VG_model.R | 242 - R/OSDquery.R | 324 - R/ROSETTA.R | 544 +- R/SDA-spatial.R | 1096 ++--- R/SDA_query.R | 720 +-- R/SDA_utils.R | 66 R/SSURGO_spatial_query.R | 166 R/STR.R | 694 +-- R/SoilDataViewer.R | 267 - R/WCS-utils.R | 2363 ++++++++---- R/aqp_data.R | 96 R/createSSURGO.R | 1756 +++++--- R/createStaticNASIS.R | 372 - R/database-sources.R | 34 R/dbQueryNASIS.R | 168 R/estimateColorMixture.R | 174 R/fetchEDIT_tools.R | 316 - R/fetchHWSD.R | 244 - R/fetchHenry.R | 902 ++-- R/fetchKSSL.R | 898 ++-- R/fetchLDM.R | 765 +-- R/fetchNASIS.R | 269 - R/fetchNASISLabData.R | 148 R/fetchNASISWebReport.R | 712 +-- R/fetchNASIS_components.R | 382 - R/fetchNOAA.R | 262 - R/fetchOSD.R | 922 ++-- R/fetchPedonPC.R | 242 - R/fetchRaCA.R | 402 +- R/fetchSCAN.R | 1190 +++--- R/fetchSDA_spatial.R | 776 +-- R/fetchSOLUS.R | 734 +-- R/fetchSRI.R | 362 - R/fetchSoilGrids.R | 942 ++-- R/fetchVegdata.R | 192 R/filter_KSSL.R | 88 R/getHzErrorsNASIS.R | 92 R/getHzErrorsPedonPC.R | 48 R/get_NASIS_table_key_by_name.R | 126 R/get_NASIS_table_name_by_purpose.R | 478 +- R/get_OSD.R | 471 +- R/get_RMF_from_NASIS_db.R | 136 R/get_SDA_NASIS_keys.R | 156 R/get_SDA_coecoclass.R | 646 +-- R/get_SDA_cosurfmorph.R | 372 - R/get_SDA_hydric.R | 264 - R/get_SDA_interpretation.R | 2042 +++++----- R/get_SDA_metrics.R | 124 R/get_SDA_muaggatt.R | 100 R/get_SDA_pmgroupname.R | 434 +- R/get_SDA_property.R | 1452 +++---- R/get_SSURGO_utils.R | 739 +-- R/get_colors_from_NASIS_db.R | 286 - R/get_component_data_from_NASIS_db.R | 1380 +++---- R/get_component_from_GDB.R | 1589 ++++---- R/get_component_from_SDA.R | 2066 +++++----- R/get_concentrations_from_NASIS_db.R | 102 R/get_cosoilmoist_from_NASIS.R | 134 R/get_cosoilmoist_from_NASISWebReport.R | 86 R/get_cosoilmoist_from_SDA.R | 90 R/get_ecosite_history_from_NASIS_db.R | 92 R/get_extended_data_from_NASIS_db.R | 690 +-- R/get_extended_data_from_pedon_db.R | 286 - R/get_hz_data_from_NASIS_db.R | 138 R/get_hz_data_from_pedon_db.R | 168 R/get_lablayer_data_from_NASIS_db.R | 120 R/get_labpedon_data_from_NASIS_db.R | 76 R/get_mapunit_from_NASIS.R | 376 - R/get_phfmp_from_NASIS_db.R | 60 R/get_phlabresults_data_from_NASIS_db.R | 276 - R/get_phroots_from_NASIS_db.R | 102 R/get_project_from_NASIS.R | 192 R/get_site_data_from_NASIS_db.R | 512 +- R/get_site_data_from_pedon_db.R | 190 R/get_soilseries_from_NASIS.R | 240 - R/get_text_notes_from_NASIS_db.R | 366 - R/get_veg_data_from_NASIS_db.R | 134 R/get_veg_from_AK_Site.R | 88 R/get_veg_from_MT_veg_db.R | 84 R/get_veg_from_NPS_PLOTS_db.R | 78 R/get_veg_other_from_MT_veg_db.R | 84 R/get_veg_species_from_MT_veg_db.R | 80 R/get_vegplot_data_from_NASIS_db.R | 1178 ++--- R/mukey-WCS.R | 554 +- R/openNASISchannel.R | 188 R/parseWebReport.R | 246 - R/seriesExtent.R | 323 - R/siblings.R | 272 - R/simplifyArtifactData.R | 298 - R/simplifyColorData.R | 366 - R/simplifyFragmentData.R | 526 +- R/soilColorWCS.R | 492 +- R/soilDB-package.R | 324 - R/soilDB_user_dir.R | 122 R/taxaExtent.R | 748 +-- R/uncode.R | 796 ++-- R/utils.R | 2693 ++++++------- R/waterDayYear.R | 102 build/partial.rdb |binary build/vignette.rds |binary data/SCAN_SNOTEL_metadata.rda |binary data/gopheridge.R | 28 data/loafercreek.R | 28 data/mineralKing.R | 28 inst/CITATION | 36 inst/WORDLIST | 1570 +++---- inst/doc/dominant-es.R | 288 - inst/doc/dominant-es.Rmd | 578 +- inst/doc/dominant-es.html | 1326 +++--- inst/doc/fetchNASIS.R | 510 +- inst/doc/fetchNASIS.Rmd | 544 +- inst/doc/fetchNASIS.html | 2538 +----------- inst/doc/local-ssurgo.R | 290 - inst/doc/local-ssurgo.Rmd | 628 +-- inst/doc/local-ssurgo.html | 1372 +++--- inst/doc/sda.R | 1962 ++++----- inst/doc/sda.Rmd | 4380 +++++++++++----------- inst/doc/sda.html | 5316 +++++++++++++-------------- inst/doc/soilweb-data-functions.R | 252 - inst/doc/soilweb-data-functions.Rmd | 1118 ++--- inst/doc/soilweb-data-functions.html | 1994 +++++----- inst/doc/wcs-ssurgo.R | 1195 +++--- inst/doc/wcs-ssurgo.Rmd | 1706 ++++---- inst/doc/wcs-ssurgo.html | 2434 ++++++------ man/ISSR800.wcs.Rd | 156 man/KSSL_VG_model.Rd | 122 man/NASISChoiceList.Rd | 120 man/NASISDomainsAsFactor.Rd | 44 man/NASISLocalDatabase.Rd | 36 man/OSDquery.Rd | 258 - man/ROSETTA.Rd | 222 - man/SCAN_SNOTEL_metadata.Rd | 28 man/SDA_query.Rd | 162 man/SDA_spatialQuery.Rd | 472 +- man/STRplot.Rd | 88 man/SoilWeb_spatial_query.Rd | 110 man/WCS_details.Rd | 42 man/createSSURGO.Rd | 189 man/createStaticNASIS.Rd | 84 man/dbConnectNASIS.Rd | 44 man/dbQueryNASIS.Rd | 46 man/downloadSSURGO.Rd | 183 man/estimateColorMixture.Rd | 54 man/fetchGDB.Rd | 186 man/fetchHWSD.Rd | 138 man/fetchHenry.Rd | 198 - man/fetchKSSL.Rd | 262 - man/fetchLDM.Rd | 175 man/fetchNASIS.Rd | 242 - man/fetchNASISLabData.Rd | 58 man/fetchNASISWebReport.Rd | 188 man/fetchOSD.Rd | 254 - man/fetchPedonPC.Rd | 78 man/fetchRaCA.Rd | 116 man/fetchSCAN.Rd | 250 - man/fetchSDA.Rd | 230 - man/fetchSDA_spatial.Rd | 182 man/fetchSOLUS.Rd | 282 - man/fetchSRI.Rd | 70 man/fetchSoilGrids.Rd | 370 - man/fetchVegdata.Rd | 230 - man/filter_geochem.Rd | 68 man/format_SQL_in_statement.Rd | 46 man/getHzErrorsNASIS.Rd | 50 man/get_EDIT_ecoclass_by_geoUnit.Rd | 52 man/get_NASIS_metadata.Rd | 90 man/get_NASIS_table_key_by_name.Rd | 60 man/get_NASIS_table_metadata.Rd | 92 man/get_NASIS_table_name_by_purpose.Rd | 82 man/get_NOAA_GHCND.Rd | 76 man/get_NOAA_stations_nearXY.Rd | 72 man/get_OSD.Rd | 94 man/get_RMF_from_NASIS_db.Rd | 46 man/get_SDA_NASIS_key.Rd | 118 man/get_SDA_coecoclass.Rd | 176 man/get_SDA_cosurfmorph.Rd | 170 man/get_SDA_hydric.Rd | 114 man/get_SDA_interpretation.Rd | 1428 +++---- man/get_SDA_metrics.Rd | 62 man/get_SDA_muaggatt.Rd | 68 man/get_SDA_pmgroupname.Rd | 98 man/get_SDA_property.Rd | 310 - man/get_SDV_legend_elements.Rd | 56 man/get_SRI.Rd | 158 man/get_SRI_layers.Rd | 58 man/get_colors_from_NASIS_db.Rd | 78 man/get_colors_from_pedon_db.Rd | 50 man/get_comonth_from_NASIS_db.Rd | 90 man/get_component_data_from_NASIS_db.Rd | 182 man/get_cosoilmoist_from_NASIS.Rd | 108 man/get_ecosite_history_from_NASIS_db.Rd | 62 man/get_extended_data_from_NASIS_db.Rd | 94 man/get_extended_data_from_pedon_db.Rd | 50 man/get_hz_data_from_NASIS_db.Rd | 64 man/get_hz_data_from_pedon_db.Rd | 58 man/get_lablayer_data_from_NASIS_db.Rd | 64 man/get_labpedon_data_from_NASIS_db.Rd | 64 man/get_mapunit_from_NASIS.Rd | 90 man/get_phroots_from_NASIS_db.Rd | 38 man/get_project_from_NASIS.Rd | 48 man/get_site_data_from_NASIS_db.Rd | 114 man/get_site_data_from_pedon_db.Rd | 50 man/get_soilDB_env.Rd | 47 man/get_soilseries_from_NASIS.Rd | 92 man/get_text_notes_from_NASIS_db.Rd | 110 man/get_veg_data_from_NASIS_db.Rd | 56 man/get_veg_from_AK_Site.Rd | 50 man/get_veg_from_MT_veg_db.Rd | 52 man/get_veg_from_NPS_PLOTS_db.Rd | 54 man/get_veg_other_from_MT_veg_db.Rd | 52 man/get_veg_species_from_MT_veg_db.Rd | 52 man/loafercreek.Rd | 162 man/local_NASIS_defined.Rd | 64 man/make_EDIT_service_URL.Rd | 184 man/metadata.Rd | 52 man/mukey.wcs.Rd | 165 man/parseWebReport.Rd | 66 man/processSDA_WKT.Rd | 76 man/seriesExtent.Rd | 130 man/siblings.Rd | 124 man/simplifyColorData.Rd | 102 man/simplifyFragmentData.Rd | 138 man/soilColor.wcs.Rd | 181 man/soilDB-package.Rd | 42 man/soilDB_user_dir.Rd | 124 man/taxaExtent.Rd | 520 +- man/uncode.Rd | 138 man/waterDayYear.Rd | 72 tests/testthat/test-ISSR800.R | 208 - tests/testthat/test-OSDquery.R | 74 tests/testthat/test-ROSETTA.R | 392 - tests/testthat/test-SDA_query.R | 618 +-- tests/testthat/test-SoilDataViewer.R | 60 tests/testthat/test-aqp_data.R | 38 tests/testthat/test-createSSURGO.R |only tests/testthat/test-dbQueryNASIS.R | 64 tests/testthat/test-estimateColorMixture.R | 94 tests/testthat/test-estimateSTR.R | 86 tests/testthat/test-fetchEDIT_tools.R | 92 tests/testthat/test-fetchGDB.R |only tests/testthat/test-fetchHenry.R | 412 +- tests/testthat/test-fetchKSSL.R | 400 +- tests/testthat/test-fetchLDM.R | 130 tests/testthat/test-fetchNASIS.R | 310 - tests/testthat/test-fetchNASISLabData.R | 94 tests/testthat/test-fetchNASISWebReport.R | 198 - tests/testthat/test-fetchOSD.R | 286 - tests/testthat/test-fetchSCAN.R | 156 tests/testthat/test-fetchSDA.R | 146 tests/testthat/test-fetchSDA_spatial.R | 184 tests/testthat/test-fetchSOLUS.R | 210 - tests/testthat/test-fetchSRI.R | 92 tests/testthat/test-fetchSoilGrids.R | 80 tests/testthat/test-get_OSD.R | 126 tests/testthat/test-get_SDA_coecoclass.R | 120 tests/testthat/test-get_SDA_cosurfmorph.R | 62 tests/testthat/test-get_SDA_hydric.R | 62 tests/testthat/test-get_SDA_interpretation.R | 208 - tests/testthat/test-get_SDA_muaggatt.R | 28 tests/testthat/test-get_SDA_pmgroupname.R | 52 tests/testthat/test-get_SDA_property.R | 678 +-- tests/testthat/test-get_SSURGO_utils.R | 30 tests/testthat/test-mukey-WCS.R | 94 tests/testthat/test-seriesExtent.R | 52 tests/testthat/test-siblings.R | 124 tests/testthat/test-simplifyArtifactData.R | 388 - tests/testthat/test-simplifyColorData.R | 326 - tests/testthat/test-simplifyFragmentData.R | 980 ++-- tests/testthat/test-soilDBdata.R | 190 tests/testthat/test-taxaExtent.R | 74 tests/testthat/test-uncode.R | 110 tests/testthat/test-waterDayYear.R | 216 - vignettes/dominant-es.Rmd | 578 +- vignettes/fetchNASIS.Rmd | 544 +- vignettes/local-ssurgo.Rmd | 628 +-- vignettes/sda.Rmd | 4380 +++++++++++----------- vignettes/soilweb-data-functions.Rmd | 1118 ++--- vignettes/wcs-ssurgo.Rmd | 1706 ++++---- 284 files changed, 55806 insertions(+), 56016 deletions(-)
Title: Betas-Select in Structural Equation Models and Linear Models
Description: It computes betas-select, coefficients after standardization in
structural equation models and regression models, standardizing only selected
variables. Supports models with moderation, with product terms formed after
standardization. It also offers confidence intervals that account for
standardization, including bootstrap confidence intervals as proposed by
Cheung et al. (2022) <doi:10.1037/hea0001188>. An introduction to the package
can be found in Sun et al. (2026) <doi:10.1080/00273171.2026.2672692>.
Author: Shu Fai Cheung [aut, cre] ,
Rong Wei Sun [aut] ,
Florbela Chang [aut] ,
Wendie Yang [aut] ,
Sing-Hang Cheung [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between betaselectr versions 0.2.1 dated 2026-06-09 and 0.2.2 dated 2026-07-11
DESCRIPTION | 6 MD5 | 122 NEWS.md | 12 R/lav_betaselect.R | 1378 ++--- R/lm_betaselect.R | 1576 +++--- R/lm_betaselect_methods.R | 5144 ++++++++++----------- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 30 man/anova.lm_betaselect.Rd | 194 man/coef.lav_betaselect.Rd | 120 man/coef.lm_betaselect.Rd | 190 man/confint.lav_betaselect.Rd | 134 man/confint.lm_betaselect.Rd | 356 - man/data_test_medmod.Rd | 86 man/data_test_mod_cat.Rd | 70 man/data_test_mod_cat2.Rd | 76 man/data_test_mod_cat_binary.Rd | 68 man/getCall.lm_betaselect.Rd | 156 man/lav_betaselect.Rd | 818 +-- man/lm_betaselect.Rd | 978 +-- man/predict.glm_betaselect.Rd | 182 man/predict.lm_betaselect.Rd | 174 man/print.lav_betaselect.Rd | 298 - man/std_data.Rd | 90 man/summary.glm_betaselect.Rd | 524 +- man/summary.lm_betaselect.Rd | 444 - man/vcov.lm_betaselect.Rd | 282 - tests/testthat/test-lav_betaselect.R | 274 - tests/testthat/test-lav_betaselect_check.R | 96 tests/testthat/test-lav_betaselect_coef.R | 140 tests/testthat/test-lav_betaselect_confint.R | 84 tests/testthat/test-lav_betaselect_mg.R | 306 - tests/testthat/test-lav_betaselect_mg_eq.R | 298 - tests/testthat/test-lav_betaselect_mod.R | 200 tests/testthat/test-lav_betaselect_mod_Intercept.R | 180 tests/testthat/test-lav_betaselect_mod_boot_1.R | 140 tests/testthat/test-lav_betaselect_mod_boot_2.R | 114 tests/testthat/test-lav_betaselect_mod_boot_3.R | 104 tests/testthat/test-lav_betaselect_mod_boot_4.R | 110 tests/testthat/test-lav_betaselect_mod_colon.R | 200 tests/testthat/test-lav_betaselect_mod_mg.R | 240 tests/testthat/test-lav_betaselect_mod_no_center.R | 168 tests/testthat/test-lav_betaselect_one_iv.R | 215 tests/testthat/test-lav_betaselect_ord.R | 136 tests/testthat/test-lav_betaselect_parallel.R | 122 tests/testthat/test-lav_betaselect_print_ustd.R | 82 tests/testthat/test-lav_betaselect_tmp.R | 136 tests/testthat/test-lav_betaselect_user_1.R | 135 tests/testthat/test-lav_betaselect_user_2.R | 86 tests/testthat/test-lav_betaselect_user_boot_1.R | 168 tests/testthat/test_find_all_products_cats.R | 102 tests/testthat/test_glm_betaselect_skip_def.R | 28 vignettes/apa.csl | 3832 +++++++-------- vignettes/articles/apa.csl | 3832 +++++++-------- vignettes/articles/lav_betaselect_technical.Rmd | 496 +- vignettes/articles/lm_betaselect_technical.Rmd | 208 vignettes/betaselectr_glm.Rmd.original | 822 +-- vignettes/betaselectr_lav.Rmd.original | 812 +-- vignettes/betaselectr_lm.Rmd.original | 846 +-- vignettes/references.bib | 378 - 62 files changed, 14324 insertions(+), 14276 deletions(-)
More information about BayesSurveillance at CRAN
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Title: Construction of Genetic Maps in Experimental Crosses
Description: Analysis of molecular marker data from model and non-model systems.
For the later, it allows statistical analysis by simultaneously estimating
linkage and linkage phases (genetic map construction) according to Wu and
colleagues (2002)
<doi:10.1006/tpbi.2002.1577>. All analysis are based on multi-point
approaches using hidden Markov models.
Author: Cristiane Taniguti [aut, cre],
Marcelo Mollinari [aut],
Rodrigo Amadeu [ctb],
Getulio Ferreira [ctb],
Gabriel Margarido [aut],
Jeekin Lau [ctb],
Karl Broman [ctb],
Katharine Preedy [ctb, cph] ,
Bastian Schiffthaler [ctb, cph] ,
Augusto Garcia [aut, c [...truncated...]
Maintainer: Cristiane Taniguti <ctaniguti@ufl.edu>
Diff between onemap versions 3.2.4 dated 2026-01-12 and 3.2.6 dated 2026-07-11
DESCRIPTION | 10 ++--- MD5 | 24 ++++++------- NEWS.md | 10 +++++ R/create_probs.R | 56 +++++++++++++------------------- R/onemap_read_vcfR.R | 57 +++++++++++++++++++++++---------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Inbred_Based_Populations.html | 9 ++--- inst/doc/Introduction_R.Rmd | 2 - inst/doc/Introduction_R.html | 57 +++++++++++++++++---------------- inst/doc/Outcrossing_Populations.html | 9 ++--- inst/doc/Overview.html | 4 +- vignettes/Introduction_R.Rmd | 2 - 13 files changed, 136 insertions(+), 104 deletions(-)
Title: Healthcare Analysis Methods
Description: Conducts analyses for healthcare program evaluations or intervention
studies. Calculates regression analyses for standard ordinary least squares
(OLS or linear) or logistic models. Performs regression models used for
causal modeling such as differences-in-differences (DID) and interrupted
time series (ITS) models. Provides limited interpretations of model
results and a ranking of variable importance in models. Performs
propensity score models, top-coding of model outcome variables, and
can return new data with the newly formed variables. Conducts Bayesian
analysis summaries and graphs, decision curve analysis, and produces some
Shewhart control charts. Also performs Cronbach's alpha for various scale
items (e.g., survey questions). See Github URL for examples in the README
file. For more details on the statistical methods, see
Allen & Yen (1979, ISBN:0-8185-0283-5),
Angrist & Pischke (2009, ISBN:9780691120355),
Cohen (1988, ISBN:0-8058-0283-5),
Gebski (2012) <doi:10.1017/S0 [...truncated...]
Author: Stephen Zuniga [aut, cre, cph]
Maintainer: Stephen Zuniga <rms.shiny@gmail.com>
Diff between ham versions 1.2.0 dated 2026-03-19 and 1.3.0 dated 2026-07-11
DESCRIPTION | 12 MD5 | 120 +-- NAMESPACE | 179 ++-- NEWS.md | 2 R/Bayes.R | 391 ++++++++-- R/alpha.R | 2 R/assess.R | 230 +++++- R/control.R | 10 R/data.R | 25 R/decide.R | 3 R/group.R | 9 R/importance.R | 6 R/interpret.R | 511 ++++++++++++- R/itsEffect.R | 16 R/plot.Bayes.R | 51 - R/plot.assess.R | 2 R/plot.control.R | 32 R/plot.decide.R | 3 R/plot.group.R | 64 + R/plot.importance.R | 7 R/plot.review.R |only R/print.alpha.R | 3 R/print.interpret.R | 72 + R/print.review.R |only R/review.R |only README.md | 325 +++++++- data/NHSN.rda |only data/co2multi.rda |binary inst/doc/Bayes.R | 18 inst/doc/Bayes.Rmd | 70 + inst/doc/Bayes.html | 429 ++++++++--- inst/doc/control.R | 4 inst/doc/control.Rmd | 4 inst/doc/control.html | 8 inst/doc/ham-package.R | 81 ++ inst/doc/ham-package.Rmd | 151 +++- inst/doc/ham-package.html | 1251 ++++++++++++++++++++++------------ man/Bayes.Rd | 61 + man/NHSN.Rd |only man/alpha.Rd | 3 man/assess.Rd | 57 + man/control.Rd | 6 man/decide.Rd | 3 man/figures/README-chartU1-1.png |binary man/figures/README-plotreview2b-1.png |only man/group.Rd | 3 man/importance.Rd | 7 man/interpret.Rd | 30 man/itsEffect.Rd | 17 man/plot.Bayes.Rd | 3 man/plot.assess.Rd | 3 man/plot.control.Rd | 9 man/plot.decide.Rd | 3 man/plot.group.Rd | 16 man/plot.importance.Rd | 7 man/plot.review.Rd |only man/print.alpha.Rd | 3 man/print.interpret.Rd | 7 man/print.review.Rd |only man/review.Rd |only tests/testthat/test-Bayes.R | 2 tests/testthat/test-interpret.R | 2 tests/testthat/test-review.R |only vignettes/Bayes.Rmd | 70 + vignettes/control.Rmd | 4 vignettes/ham-package.Rmd | 151 +++- 66 files changed, 3481 insertions(+), 1077 deletions(-)
Title: Tree-Spatial Scan Statistic for Cluster Detection
Description: Implements the tree-spatial scan statistic for detecting clusters
that combine both spatial and hierarchical structures, as proposed by
Cancado et al. (2025) <doi:10.1007/s10651-025-00670-w>. The method extends
Kulldorff (1997) <doi:10.1080/03610929708831995> circular spatial scan
statistic and the tree-based scan statistic of Kulldorff et al. (2003)
<doi:10.1111/1541-0420.00039> by searching for anomalies in both
geographic regions and branches of hierarchical trees simultaneously. The
package also provides standalone implementations of Kulldorff's circular
spatial scan statistic and the tree-based scan statistic. Statistical
significance is assessed via Monte Carlo simulation under a Poisson or
binomial model, with optional 'OpenMP' parallelization.
Author: Allan Quadros [aut, cre] ,
Andre L. F. Cancado [aut] ,
Geiziane S. Oliveira [aut],
Luiz H. Duczmal [aut]
Maintainer: Allan Quadros <allanvcq@gmail.com>
Diff between treeSS versions 0.2.4 dated 2026-07-02 and 0.2.5 dated 2026-07-11
DESCRIPTION | 6 MD5 | 12 NEWS.md | 33 ++ R/build_zones.R | 58 +++- R/csr_helpers.R | 53 ++- inst/doc/florida.html | 636 +++++++++++++++++++-------------------------- inst/doc/introduction.html | 504 ++++++++++++++--------------------- 7 files changed, 597 insertions(+), 705 deletions(-)
Title: An IMAP Client for R
Description: A session-based IMAP client that implements the full functionality of
the IMAP4rev1 protocol (RFC 3501), allowing virtually all e-mail operations to be
performed from within R, paving the way for e-mail data analysis.
Author: Allan Quadros [aut, cre] ,
Paul Smith [ctb],
Kurt Hornik [ctb]
Maintainer: Allan Quadros <allanvcq@gmail.com>
Diff between mRpostman versions 1.1.4 dated 2024-09-17 and 1.2.2 dated 2026-07-11
mRpostman-1.1.4/mRpostman/inst/doc/code_migration.R |only mRpostman-1.1.4/mRpostman/inst/doc/code_migration.Rmd |only mRpostman-1.1.4/mRpostman/inst/doc/code_migration.html |only mRpostman-1.1.4/mRpostman/vignettes/code_migration.Rmd |only mRpostman-1.1.4/mRpostman/vignettes/figures/xoauth |only mRpostman-1.2.2/mRpostman/DESCRIPTION | 20 mRpostman-1.2.2/mRpostman/MD5 | 194 - mRpostman-1.2.2/mRpostman/R/AND.R | 4 mRpostman-1.2.2/mRpostman/R/OR.R | 4 mRpostman-1.2.2/mRpostman/R/R6.R | 400 ++- mRpostman-1.2.2/mRpostman/R/add-flags-int.R | 6 mRpostman-1.2.2/mRpostman/R/adjust-folder-name.R | 2 mRpostman-1.2.2/mRpostman/R/adjust_repeated_filenames.R | 2 mRpostman-1.2.2/mRpostman/R/append-int.R |only mRpostman-1.2.2/mRpostman/R/apply-charset.R |only mRpostman-1.2.2/mRpostman/R/assert-capability.R |only mRpostman-1.2.2/mRpostman/R/check-args.R | 6 mRpostman-1.2.2/mRpostman/R/clean-msg-text.R | 15 mRpostman-1.2.2/mRpostman/R/close-folder-int.R |only mRpostman-1.2.2/mRpostman/R/config-con-handle-and-params.R | 4 mRpostman-1.2.2/mRpostman/R/create-folder-int.R | 2 mRpostman-1.2.2/mRpostman/R/decode-mime-header.R | 11 mRpostman-1.2.2/mRpostman/R/decode-mime-text.R | 11 mRpostman-1.2.2/mRpostman/R/decode-quoted-printable-header.R | 59 mRpostman-1.2.2/mRpostman/R/decode-quoted-printable-text.R | 51 mRpostman-1.2.2/mRpostman/R/define-searchrequest-custom.R | 12 mRpostman-1.2.2/mRpostman/R/define-searchrequest-size.R | 4 mRpostman-1.2.2/mRpostman/R/define-searchrequest-string.R | 14 mRpostman-1.2.2/mRpostman/R/delete-folder-int.R |only mRpostman-1.2.2/mRpostman/R/esearch-count-int.R | 8 mRpostman-1.2.2/mRpostman/R/esearch-max-id-int.R | 10 mRpostman-1.2.2/mRpostman/R/esearch-min-id-int.R | 10 mRpostman-1.2.2/mRpostman/R/examine-folder-int.R | 17 mRpostman-1.2.2/mRpostman/R/execute-attachment-fetch.R | 6 mRpostman-1.2.2/mRpostman/R/execute-ordered-search.R |only mRpostman-1.2.2/mRpostman/R/execute-search.R | 22 mRpostman-1.2.2/mRpostman/R/expunge-int.R | 2 mRpostman-1.2.2/mRpostman/R/extract-MIME-level-and-filenames.R | 2 mRpostman-1.2.2/mRpostman/R/fetch-attachments-int.R | 4 mRpostman-1.2.2/mRpostman/R/fetch-body-int.R | 2 mRpostman-1.2.2/mRpostman/R/fetch-header-int.R | 2 mRpostman-1.2.2/mRpostman/R/fetch-metadata-int.R | 2 mRpostman-1.2.2/mRpostman/R/fetch-text-int.R | 2 mRpostman-1.2.2/mRpostman/R/get-attachments-int.R | 4 mRpostman-1.2.2/mRpostman/R/get-quota-int.R |only mRpostman-1.2.2/mRpostman/R/get-quota-root-int.R |only mRpostman-1.2.2/mRpostman/R/id-int.R |only mRpostman-1.2.2/mRpostman/R/list-attachments.R | 2 mRpostman-1.2.2/mRpostman/R/list-mail-folders-int.R | 122 mRpostman-1.2.2/mRpostman/R/list-special-use-folders-int.R |only mRpostman-1.2.2/mRpostman/R/list-subscribed-folders-int.R |only mRpostman-1.2.2/mRpostman/R/modify-con-handle.R | 2 mRpostman-1.2.2/mRpostman/R/move-msg-int.R | 6 mRpostman-1.2.2/mRpostman/R/namespace-int.R |only mRpostman-1.2.2/mRpostman/R/noop-int.R |only mRpostman-1.2.2/mRpostman/R/parse-esearch-all.R |only mRpostman-1.2.2/mRpostman/R/parse-examine-counts.R |only mRpostman-1.2.2/mRpostman/R/parse-folder-list.R |only mRpostman-1.2.2/mRpostman/R/parse-id.R |only mRpostman-1.2.2/mRpostman/R/parse-namespace.R |only mRpostman-1.2.2/mRpostman/R/parse-quota.R |only mRpostman-1.2.2/mRpostman/R/parse-sort.R |only mRpostman-1.2.2/mRpostman/R/parse-special-use.R |only mRpostman-1.2.2/mRpostman/R/parse-status-counts.R |only mRpostman-1.2.2/mRpostman/R/parse-thread.R |only mRpostman-1.2.2/mRpostman/R/remove-flags-int.R | 6 mRpostman-1.2.2/mRpostman/R/rename-folder-int.R | 2 mRpostman-1.2.2/mRpostman/R/replace-flags-int.R | 6 mRpostman-1.2.2/mRpostman/R/search-int.R | 2 mRpostman-1.2.2/mRpostman/R/sent-before.R | 4 mRpostman-1.2.2/mRpostman/R/sent-on.R | 2 mRpostman-1.2.2/mRpostman/R/serialize-filename.R | 2 mRpostman-1.2.2/mRpostman/R/smaller-than.R | 2 mRpostman-1.2.2/mRpostman/R/sort-int.R |only mRpostman-1.2.2/mRpostman/R/status-int.R |only mRpostman-1.2.2/mRpostman/R/subscribe-folder-int.R |only mRpostman-1.2.2/mRpostman/R/thread-int.R |only mRpostman-1.2.2/mRpostman/R/unselect-folder-int.R |only mRpostman-1.2.2/mRpostman/R/unsubscribe-folder-int.R |only mRpostman-1.2.2/mRpostman/R/zzz.R | 2 mRpostman-1.2.2/mRpostman/README.md | 247 + mRpostman-1.2.2/mRpostman/build/vignette.rds |binary mRpostman-1.2.2/mRpostman/inst/doc/basics.R | 73 mRpostman-1.2.2/mRpostman/inst/doc/basics.Rmd | 191 + mRpostman-1.2.2/mRpostman/inst/doc/basics.html | 1271 ++++------ mRpostman-1.2.2/mRpostman/inst/doc/xoauth2.0.R | 110 mRpostman-1.2.2/mRpostman/inst/doc/xoauth2.0.Rmd | 367 +- mRpostman-1.2.2/mRpostman/inst/doc/xoauth2.0.html | 528 +--- mRpostman-1.2.2/mRpostman/man/AND.Rd | 4 mRpostman-1.2.2/mRpostman/man/ImapCon.Rd | 918 ++++++- mRpostman-1.2.2/mRpostman/man/OR.Rd | 4 mRpostman-1.2.2/mRpostman/man/decode_mime_header.Rd | 4 mRpostman-1.2.2/mRpostman/man/larger_than.Rd | 2 mRpostman-1.2.2/mRpostman/man/list_attachments.Rd | 2 mRpostman-1.2.2/mRpostman/man/mRpostman-package.Rd | 6 mRpostman-1.2.2/mRpostman/man/sent_before.Rd | 4 mRpostman-1.2.2/mRpostman/man/sent_on.Rd | 2 mRpostman-1.2.2/mRpostman/man/smaller_than.Rd | 2 mRpostman-1.2.2/mRpostman/tests |only mRpostman-1.2.2/mRpostman/vignettes/basics.Rmd | 191 + mRpostman-1.2.2/mRpostman/vignettes/xoauth2.0.Rmd | 367 +- 101 files changed, 3442 insertions(+), 1925 deletions(-)
Title: A Lightweight Version of R Markdown
Description: Render R Markdown to Markdown (without using 'knitr'), and Markdown
to lightweight HTML or 'LaTeX' documents with the 'commonmark' package (instead
of 'Pandoc'). Some missing Markdown features in 'commonmark' are also
supported, such as raw HTML or 'LaTeX' blocks, 'LaTeX' math, superscripts,
subscripts, footnotes, element attributes, and appendices,
but not all 'Pandoc' Markdown features are (or will be) supported. With
additional JavaScript and CSS, you can also create HTML slides and articles.
This package can be viewed as a trimmed-down version of R Markdown and
'knitr'. It does not aim at rich Markdown features or a large variety of
output formats (the primary formats are HTML and 'LaTeX'). Book and website
projects of multiple input documents are also supported.
Author: Yihui Xie [aut, cre] ,
Tim Taylor [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between litedown versions 0.9 dated 2025-12-18 and 0.10 dated 2026-07-11
litedown-0.10/litedown/DESCRIPTION | 10 +- litedown-0.10/litedown/LICENSE | 2 litedown-0.10/litedown/MD5 | 64 +++++++++++------- litedown-0.10/litedown/NAMESPACE | 1 litedown-0.10/litedown/NEWS.md | 38 ++++++++-- litedown-0.10/litedown/R/format.R | 4 - litedown-0.10/litedown/R/fuse.R | 70 +++++++++++++++++++- litedown-0.10/litedown/R/mark.R | 46 ++++++++----- litedown-0.10/litedown/R/package.R | 2 litedown-0.10/litedown/R/site.R | 61 ++++++++++++++--- litedown-0.10/litedown/R/utils.R | 24 +++++- litedown-0.10/litedown/build/vignette.rds |binary litedown-0.10/litedown/inst/doc/slides.Rmd | 2 litedown-0.10/litedown/inst/doc/slides.html | 36 +++++----- litedown-0.10/litedown/inst/resources/default.css | 14 ++-- litedown-0.10/litedown/inst/resources/litedown.html | 2 litedown-0.10/litedown/inst/rstudio |only litedown-0.10/litedown/man/fuse_book.Rd | 9 ++ litedown-0.10/litedown/man/fuse_exit.Rd |only litedown-0.10/litedown/man/fuse_site.Rd | 9 ++ litedown-0.10/litedown/man/html_format.Rd | 2 litedown-0.10/litedown/man/litedown-package.Rd | 7 +- litedown-0.10/litedown/man/mark.Rd | 9 ++ litedown-0.10/litedown/man/markdown_options.Rd | 2 litedown-0.10/litedown/tests/test-cran |only litedown-0.10/litedown/tests/test-cran.R |only litedown-0.10/litedown/vignettes/slides.Rmd | 2 litedown-0.9/litedown/tests/empty.R |only litedown-0.9/litedown/tests/fig_path.R |only litedown-0.9/litedown/tests/smartypants.R |only 30 files changed, 309 insertions(+), 107 deletions(-)