Title: Functional Analysis of Phenotypic Growth Data to Smooth and
Extract Traits
Description: Assists in the plotting and functional smoothing of traits
measured over time and the extraction of features from these traits,
implementing the SET (Smoothing and Extraction of Traits) method
described in Brien et al. (2020) Plant Methods, 16. Smoothing of
growth trends for individual plants using natural cubic smoothing
splines or P-splines is available for removing transient effects and
segmented smoothing is available to deal with discontinuities in
growth trends. There are graphical tools for assessing the adequacy
of trait smoothing, both when using this and other packages, such as
those that fit nonlinear growth models. A range of per-unit (plant,
pot, plot) growth traits or features can be extracted from the
data, including single time points, interval growth rates and other
growth statistics, such as maximum growth or days to maximum growth.
The package also has tools adapted to inputting data from
high-throughput phenotyping facilities, such from a Lemna-Tec
Scananalyzer 3D ( [...truncated...]
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between growthPheno versions 3.1.18 dated 2025-10-19 and 3.1.20 dated 2026-07-15
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- build/partial.rdb |binary build/vignette.rds |binary inst/News.Rd | 9 +++++++++ inst/doc/Rice.pdf |binary inst/doc/Tomato.pdf |binary inst/doc/growthPheno-manual.pdf |binary man/growthPheno-pkg.Rd | 2 +- man/traitExtractFeatures.Rd | 2 +- 10 files changed, 24 insertions(+), 15 deletions(-)
Title: A 'Linter' for R Code
Description: Checks adherence to a given style, syntax errors and possible
semantic issues. Supports on the fly checking of R code edited with
'RStudio IDE', 'Emacs', 'Vim', 'Sublime Text', 'Atom' and 'Visual
Studio Code'.
Author: Jim Hester [aut],
Florent Angly [aut] ,
Russ Hyde [aut],
Michael Chirico [aut, cre] ,
Kun Ren [aut],
Alexander Rosenstock [aut] ,
Indrajeet Patil [aut] ,
Hugo Gruson [aut] ,
Emmanuel Ferdman [aut]
Maintainer: Michael Chirico <michaelchirico4@gmail.com>
Diff between lintr versions 3.3.0-1 dated 2025-11-27 and 3.4.0 dated 2026-07-15
lintr-3.3.0-1/lintr/R/lintr-deprecated.R |only lintr-3.3.0-1/lintr/man/figures |only lintr-3.3.0-1/lintr/man/lintr-deprecated.Rd |only lintr-3.3.0-1/lintr/tests/testthat/lints |only lintr-3.3.0-1/lintr/tests/testthat/test-extraction_operator_linter.R |only lintr-3.3.0-1/lintr/tests/testthat/test-unnecessary_nested_if_linter.R |only lintr-3.3.0-1/lintr/tests/testthat/test-unneeded_concatenation_linter.R |only lintr-3.4.0/lintr/DESCRIPTION | 27 lintr-3.4.0/lintr/MD5 | 563 ++++------ lintr-3.4.0/lintr/NAMESPACE | 10 lintr-3.4.0/lintr/NEWS.md | 79 + lintr-3.4.0/lintr/R/T_and_F_symbol_linter.R | 4 lintr-3.4.0/lintr/R/all_equal_linter.R | 6 lintr-3.4.0/lintr/R/any_duplicated_linter.R | 132 +- lintr-3.4.0/lintr/R/any_is_na_linter.R | 8 lintr-3.4.0/lintr/R/assignment_linter.R | 49 lintr-3.4.0/lintr/R/backport_linter.R | 306 ++++- lintr-3.4.0/lintr/R/boolean_arithmetic_linter.R | 4 lintr-3.4.0/lintr/R/brace_linter.R | 13 lintr-3.4.0/lintr/R/class_equals_linter.R | 4 lintr-3.4.0/lintr/R/coalesce_linter.R | 11 lintr-3.4.0/lintr/R/commas_linter.R | 4 lintr-3.4.0/lintr/R/commented_code_linter.R | 2 lintr-3.4.0/lintr/R/comparison_negation_linter.R | 10 lintr-3.4.0/lintr/R/condition_call_linter.R | 10 lintr-3.4.0/lintr/R/condition_message_linter.R | 2 lintr-3.4.0/lintr/R/conjunct_test_linter.R | 13 lintr-3.4.0/lintr/R/consecutive_assertion_linter.R | 4 lintr-3.4.0/lintr/R/consecutive_mutate_linter.R | 6 lintr-3.4.0/lintr/R/cyclocomp_linter.R | 6 lintr-3.4.0/lintr/R/declared_functions.R | 2 lintr-3.4.0/lintr/R/duplicate_argument_linter.R | 4 lintr-3.4.0/lintr/R/equals_na_linter.R | 4 lintr-3.4.0/lintr/R/exclude.R | 30 lintr-3.4.0/lintr/R/expect_comparison_linter.R | 4 lintr-3.4.0/lintr/R/expect_identical_linter.R | 8 lintr-3.4.0/lintr/R/expect_length_linter.R | 2 lintr-3.4.0/lintr/R/expect_lint.R | 13 lintr-3.4.0/lintr/R/expect_named_linter.R | 2 lintr-3.4.0/lintr/R/expect_null_linter.R | 4 lintr-3.4.0/lintr/R/expect_s3_class_linter.R | 4 lintr-3.4.0/lintr/R/expect_s4_class_linter.R | 2 lintr-3.4.0/lintr/R/expect_true_false_linter.R | 4 lintr-3.4.0/lintr/R/expect_type_linter.R | 4 lintr-3.4.0/lintr/R/extract.R | 36 lintr-3.4.0/lintr/R/fixed_regex_linter.R | 6 lintr-3.4.0/lintr/R/function_argument_linter.R | 4 lintr-3.4.0/lintr/R/function_left_parentheses_linter.R | 8 lintr-3.4.0/lintr/R/get_source_expressions.R | 19 lintr-3.4.0/lintr/R/if_not_else_linter.R | 4 lintr-3.4.0/lintr/R/if_switch_linter.R | 73 - lintr-3.4.0/lintr/R/ifelse_censor_linter.R | 7 lintr-3.4.0/lintr/R/implicit_assignment_linter.R | 8 lintr-3.4.0/lintr/R/implicit_integer_linter.R | 4 lintr-3.4.0/lintr/R/indentation_linter.R | 228 +--- lintr-3.4.0/lintr/R/infix_spaces_linter.R | 2 lintr-3.4.0/lintr/R/inner_combine_linter.R | 2 lintr-3.4.0/lintr/R/is_numeric_linter.R | 23 lintr-3.4.0/lintr/R/keyword_quote_linter.R | 12 lintr-3.4.0/lintr/R/length_test_linter.R | 6 lintr-3.4.0/lintr/R/library_call_linter.R | 13 lintr-3.4.0/lintr/R/line_length_linter.R | 2 lintr-3.4.0/lintr/R/lint.R | 32 lintr-3.4.0/lintr/R/linter_tags.R | 13 lintr-3.4.0/lintr/R/lintr-package.R | 15 lintr-3.4.0/lintr/R/list2df_linter.R | 5 lintr-3.4.0/lintr/R/list_comparison_linter.R | 4 lintr-3.4.0/lintr/R/literal_coercion_linter.R | 4 lintr-3.4.0/lintr/R/make_linter_from_xpath.R | 28 lintr-3.4.0/lintr/R/matrix_apply_linter.R | 16 lintr-3.4.0/lintr/R/methods.R | 8 lintr-3.4.0/lintr/R/missing_argument_linter.R | 10 lintr-3.4.0/lintr/R/missing_package_linter.R | 6 lintr-3.4.0/lintr/R/namespace.R | 4 lintr-3.4.0/lintr/R/namespace_linter.R | 43 lintr-3.4.0/lintr/R/nested_ifelse_linter.R | 2 lintr-3.4.0/lintr/R/nested_pipe_linter.R | 2 lintr-3.4.0/lintr/R/nzchar_linter.R | 8 lintr-3.4.0/lintr/R/object_length_linter.R | 3 lintr-3.4.0/lintr/R/object_name_linter.R | 2 lintr-3.4.0/lintr/R/object_overwrite_linter.R | 7 lintr-3.4.0/lintr/R/object_usage_linter.R | 40 lintr-3.4.0/lintr/R/one_call_pipe_linter.R | 4 lintr-3.4.0/lintr/R/outer_negation_linter.R | 2 lintr-3.4.0/lintr/R/package_hooks_linter.R | 25 lintr-3.4.0/lintr/R/paren_body_linter.R | 3 lintr-3.4.0/lintr/R/paste_linter.R | 91 + lintr-3.4.0/lintr/R/pipe_call_linter.R | 4 lintr-3.4.0/lintr/R/pipe_consistency_linter.R | 4 lintr-3.4.0/lintr/R/pipe_continuation_linter.R | 2 lintr-3.4.0/lintr/R/pipe_return_linter.R | 1 lintr-3.4.0/lintr/R/print_linter.R | 7 lintr-3.4.0/lintr/R/quotes_linter.R | 2 lintr-3.4.0/lintr/R/redundant_equals_linter.R | 4 lintr-3.4.0/lintr/R/redundant_ifelse_linter.R | 12 lintr-3.4.0/lintr/R/regex_subset_linter.R | 18 lintr-3.4.0/lintr/R/repeat_linter.R | 8 lintr-3.4.0/lintr/R/return_linter.R | 12 lintr-3.4.0/lintr/R/sample_int_linter.R | 6 lintr-3.4.0/lintr/R/scalar_in_linter.R | 4 lintr-3.4.0/lintr/R/semicolon_linter.R | 4 lintr-3.4.0/lintr/R/seq_linter.R | 10 lintr-3.4.0/lintr/R/settings.R | 18 lintr-3.4.0/lintr/R/shared_constants.R | 20 lintr-3.4.0/lintr/R/sort_linter.R | 69 - 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lintr-3.4.0/lintr/tests/testthat/test-commented_code_linter.R | 4 lintr-3.4.0/lintr/tests/testthat/test-consecutive_assertion_linter.R | 29 lintr-3.4.0/lintr/tests/testthat/test-consecutive_mutate_linter.R | 40 lintr-3.4.0/lintr/tests/testthat/test-cyclocomp_linter.R | 2 lintr-3.4.0/lintr/tests/testthat/test-defaults.R | 2 lintr-3.4.0/lintr/tests/testthat/test-duplicate_argument_linter.R | 78 - lintr-3.4.0/lintr/tests/testthat/test-equals_na_linter.R | 26 lintr-3.4.0/lintr/tests/testthat/test-error.R | 2 lintr-3.4.0/lintr/tests/testthat/test-exclusions.R | 56 lintr-3.4.0/lintr/tests/testthat/test-expect_identical_linter.R | 26 lintr-3.4.0/lintr/tests/testthat/test-expect_length_linter.R | 12 lintr-3.4.0/lintr/tests/testthat/test-expect_lint.R | 12 lintr-3.4.0/lintr/tests/testthat/test-expect_named_linter.R | 12 lintr-3.4.0/lintr/tests/testthat/test-expect_not_linter.R | 10 lintr-3.4.0/lintr/tests/testthat/test-expect_null_linter.R | 8 lintr-3.4.0/lintr/tests/testthat/test-expect_s3_class_linter.R | 16 lintr-3.4.0/lintr/tests/testthat/test-expect_s4_class_linter.R | 8 lintr-3.4.0/lintr/tests/testthat/test-expect_true_false_linter.R | 6 lintr-3.4.0/lintr/tests/testthat/test-expect_type_linter.R | 16 lintr-3.4.0/lintr/tests/testthat/test-fixed_regex_linter.R | 12 lintr-3.4.0/lintr/tests/testthat/test-for_loop_index_linter.R | 11 lintr-3.4.0/lintr/tests/testthat/test-function_argument_linter.R | 16 lintr-3.4.0/lintr/tests/testthat/test-function_left_parentheses_linter.R | 11 lintr-3.4.0/lintr/tests/testthat/test-function_return_linter.R | 6 lintr-3.4.0/lintr/tests/testthat/test-get_source_expressions.R | 30 lintr-3.4.0/lintr/tests/testthat/test-if_not_else_linter.R | 32 lintr-3.4.0/lintr/tests/testthat/test-if_switch_linter.R | 90 + lintr-3.4.0/lintr/tests/testthat/test-implicit_assignment_linter.R | 14 lintr-3.4.0/lintr/tests/testthat/test-implicit_integer_linter.R | 4 lintr-3.4.0/lintr/tests/testthat/test-indentation_linter.R | 152 ++ lintr-3.4.0/lintr/tests/testthat/test-infix_spaces_linter.R | 7 lintr-3.4.0/lintr/tests/testthat/test-inner_combine_linter.R | 4 lintr-3.4.0/lintr/tests/testthat/test-is_numeric_linter.R | 2 lintr-3.4.0/lintr/tests/testthat/test-keyword_quote_linter.R | 4 lintr-3.4.0/lintr/tests/testthat/test-knitr_extended_formats.R | 4 lintr-3.4.0/lintr/tests/testthat/test-knitr_formats.R | 125 ++ lintr-3.4.0/lintr/tests/testthat/test-length_levels_linter.R | 2 lintr-3.4.0/lintr/tests/testthat/test-lengths_linter.R | 12 lintr-3.4.0/lintr/tests/testthat/test-library_call_linter.R | 1 lintr-3.4.0/lintr/tests/testthat/test-line_length_linter.R | 18 lintr-3.4.0/lintr/tests/testthat/test-lint.R | 46 lintr-3.4.0/lintr/tests/testthat/test-lint_package.R | 2 lintr-3.4.0/lintr/tests/testthat/test-linter_tags.R | 12 lintr-3.4.0/lintr/tests/testthat/test-list_comparison_linter.R | 2 lintr-3.4.0/lintr/tests/testthat/test-make_linter_from_xpath.R | 23 lintr-3.4.0/lintr/tests/testthat/test-matrix_apply_linter.R | 1 lintr-3.4.0/lintr/tests/testthat/test-methods.R | 15 lintr-3.4.0/lintr/tests/testthat/test-missing_package_linter.R | 30 lintr-3.4.0/lintr/tests/testthat/test-namespace_linter.R | 53 lintr-3.4.0/lintr/tests/testthat/test-nested_ifelse_linter.R | 10 lintr-3.4.0/lintr/tests/testthat/test-nested_pipe_linter.R | 28 lintr-3.4.0/lintr/tests/testthat/test-nonportable_path_linter.R | 14 lintr-3.4.0/lintr/tests/testthat/test-nrow_subset_linter.R | 8 lintr-3.4.0/lintr/tests/testthat/test-numeric_leading_zero_linter.R | 22 lintr-3.4.0/lintr/tests/testthat/test-object_length_linter.R | 2 lintr-3.4.0/lintr/tests/testthat/test-object_name_linter.R | 6 lintr-3.4.0/lintr/tests/testthat/test-object_overwrite_linter.R | 24 lintr-3.4.0/lintr/tests/testthat/test-object_usage_linter.R | 29 lintr-3.4.0/lintr/tests/testthat/test-one_call_pipe_linter.R | 14 lintr-3.4.0/lintr/tests/testthat/test-package_hooks_linter.R | 15 lintr-3.4.0/lintr/tests/testthat/test-paren_body_linter.R | 25 lintr-3.4.0/lintr/tests/testthat/test-paste_linter.R | 99 + lintr-3.4.0/lintr/tests/testthat/test-pipe_consistency_linter.R | 14 lintr-3.4.0/lintr/tests/testthat/test-pipe_continuation_linter.R | 4 lintr-3.4.0/lintr/tests/testthat/test-print_linter.R | 4 lintr-3.4.0/lintr/tests/testthat/test-quotes_linter.R | 4 lintr-3.4.0/lintr/tests/testthat/test-rep_len_linter.R | 12 lintr-3.4.0/lintr/tests/testthat/test-repeat_linter.R | 26 lintr-3.4.0/lintr/tests/testthat/test-return_linter.R | 6 lintr-3.4.0/lintr/tests/testthat/test-routine_registration_linter.R | 2 lintr-3.4.0/lintr/tests/testthat/test-rstudio_markers.R | 16 lintr-3.4.0/lintr/tests/testthat/test-sample_int_linter.R | 28 lintr-3.4.0/lintr/tests/testthat/test-scalar_in_linter.R | 20 lintr-3.4.0/lintr/tests/testthat/test-semicolon_linter.R | 133 +- lintr-3.4.0/lintr/tests/testthat/test-settings.R | 9 lintr-3.4.0/lintr/tests/testthat/test-sort_linter.R | 14 lintr-3.4.0/lintr/tests/testthat/test-spaces_inside_linter.R | 72 - lintr-3.4.0/lintr/tests/testthat/test-spaces_left_parentheses_linter.R | 74 - lintr-3.4.0/lintr/tests/testthat/test-sprintf_linter.R | 6 lintr-3.4.0/lintr/tests/testthat/test-stopifnot_all_linter.R | 2 lintr-3.4.0/lintr/tests/testthat/test-system_file_linter.R | 4 lintr-3.4.0/lintr/tests/testthat/test-terminal_close_linter.R | 3 lintr-3.4.0/lintr/tests/testthat/test-trailing_blank_lines_linter.R | 12 lintr-3.4.0/lintr/tests/testthat/test-trailing_whitespace_linter.R | 9 lintr-3.4.0/lintr/tests/testthat/test-undesirable_function_linter.R | 6 lintr-3.4.0/lintr/tests/testthat/test-undesirable_operator_linter.R | 22 lintr-3.4.0/lintr/tests/testthat/test-unnecessary_concatenation_linter.R | 4 lintr-3.4.0/lintr/tests/testthat/test-unnecessary_lambda_linter.R | 28 lintr-3.4.0/lintr/tests/testthat/test-unnecessary_nesting_linter.R | 52 lintr-3.4.0/lintr/tests/testthat/test-unnecessary_placeholder_linter.R | 4 lintr-3.4.0/lintr/tests/testthat/test-unreachable_code_linter.R | 342 +++--- lintr-3.4.0/lintr/tests/testthat/test-unused_import_linter.R | 2 lintr-3.4.0/lintr/tests/testthat/test-use_lintr.R | 13 lintr-3.4.0/lintr/tests/testthat/test-vector_logic_linter.R | 46 lintr-3.4.0/lintr/tests/testthat/test-whitespace_linter.R | 6 lintr-3.4.0/lintr/tests/testthat/test-with.R | 20 lintr-3.4.0/lintr/tests/testthat/test-xp_utils.R | 6 lintr-3.4.0/lintr/vignettes/creating_linters.Rmd | 2 lintr-3.4.0/lintr/vignettes/editors.Rmd | 2 286 files changed, 3775 insertions(+), 2316 deletions(-)
Title: 'OpenCL'-Ported R 'Mathlib' for GPU-Accelerated Packages
Description: Ships statistical and mathematical routines from R internal
'nmath' ('Mathlib') as 'OpenCL' C sources under directory 'inst/cl/', with R
wrappers that use the GPU when 'OpenCL' is available at compile time and
fall back to 'stats' equivalents otherwise. Aimed at package developers
building custom kernels (for example Bayesian GLMs via suggested package
'glmbayes') using 'opencltools' kernel loaders and related helpers. Contains
translated shims, an illustrative GLM-related kernel subsystem, vignettes,
and optional GPU acceleration. The ported routines are translated from the
'nmath' ('Mathlib') and 'Rmath' sources of R Core Team (2026) "R: A
Language and Environment for Statistical Computing"
<doi:10.32614/R.manuals>. 'OpenCL' GPU execution follows the standard
described in Stone, Gohara, and Shi (2010) <doi:10.1109/MCSE.2010.69>. The
likelihood subgradient simulation methodology implemented by the
illustrative GLM kernel subsystem is described in Nygren and Nygren (2006)
& [...truncated...]
Author: Kjell Nygren [aut, cre],
The R Core Team [ctb, cph] ,
The R Foundation [cph] ,
Ross Ihaka [ctb, cph] ,
Robert Gentleman [ctb, cph] ,
Morten Welinder [ctb, cph] ),
Martin Maechler [ctb] ,
Catherine Loader [ctb] ,
Claus Ekstroem [ctb] in R
'Mathlib' po [...truncated...]
Maintainer: Kjell Nygren <kjell.a.nygren@gmail.com>
Diff between nmathopencl versions 0.8.2 dated 2026-06-21 and 0.8.3 dated 2026-07-15
DESCRIPTION | 12 +++--- MD5 | 51 +++++++++++++++-------------- NEWS.md | 18 ++++++++++ README.md | 29 +++++++++++----- build/partial.rdb |binary inst/cl/program_preload_manifest.rds |only inst/cl/program_preload_manifest.tsv |only inst/doc/Chapter-00.html | 4 +- inst/doc/Chapter-01.html | 4 +- inst/doc/Chapter-02.html | 4 +- inst/doc/Chapter-03.html | 4 +- inst/doc/Chapter-04.html | 4 +- inst/doc/Chapter-05.html | 4 +- inst/doc/Chapter-06.html | 4 +- inst/doc/Chapter-07.html | 4 +- inst/doc/Chapter-08.html | 4 +- inst/doc/Chapter-09.html | 4 +- inst/doc/Chapter-10.html | 4 +- inst/doc/Chapter-12.html | 4 +- inst/examples/Ex_load_library_for_kernel.R | 8 ++-- inst/examples/Ex_load_program_preload.R |only man/attach_cross_library_tags.Rd | 16 +++------ man/attach_kernel_call_tags.Rd | 22 +++++------- man/attach_kernel_dependency_tags.Rd | 2 - man/extract_library_subset.Rd | 1 man/load_library_for_kernel.Rd | 1 man/stage_kernel_dependency_sort.Rd | 2 - man/write_kernel_dependency_index.Rd | 5 +- 28 files changed, 121 insertions(+), 94 deletions(-)
Title: Fit Structural Equation Models to Multiply Imputed Data
Description: The primary purpose of 'lavaan.mi' is to extend the functionality
of the R package 'lavaan', which implements structural equation modeling
(SEM). When incomplete data have been multiply imputed, the imputed data
sets can be analyzed by 'lavaan' using complete-data estimation methods,
but results must be pooled across imputations (Rubin, 1987, <doi:10.1002/9780470316696>).
The 'lavaan.mi' package automates the pooling of point and standard-error
estimates, as well as a variety of test statistics, using a familiar interface
that allows users to fit an SEM to multiple imputations as they would to a
single data set using the 'lavaan' package.
Author: Terrence D. Jorgensen [aut, cre] ,
Yves Rosseel [ctb]
Maintainer: Terrence D. Jorgensen <TJorgensen314@gmail.com>
Diff between lavaan.mi versions 0.1-0 dated 2025-03-10 and 0.1-1 dated 2026-07-15
DESCRIPTION | 16 +++---- MD5 | 44 +++++++++---------- NEWS.md | 19 +++++++- R/class-methods.R | 34 +++++++-------- R/lavaan.mi.R | 52 +++++++++-------------- R/mi2lavaan.R | 4 - R/pool-LRT.R | 92 +++++++++++++++++++++++++---------------- R/pool-Wald.R | 5 +- R/pool-indices.R | 75 +++++++++++++++++++++++++-------- R/pool-saturated.R | 9 ++-- R/pool-score.R | 11 +++- build/partial.rdb |binary man/calculate.D2.Rd | 2 man/lavResiduals.mi.Rd | 4 - man/lavTestLRT.mi.Rd | 71 +++++++++++++++++++++---------- man/lavTestScore.mi.Rd | 2 man/lavTestWald.mi.Rd | 2 man/lavaan.mi-class.Rd | 43 +++++++++---------- man/lavaan.mi.Rd | 31 +++---------- man/modindices.mi.Rd | 4 - man/parameterEstimates.mi.Rd | 2 man/poolSat.Rd | 4 - man/standardizedSolution.mi.Rd | 2 23 files changed, 308 insertions(+), 220 deletions(-)
Title: Clean and Simple Argument Checking
Description: Checks function arguments, ideally for use in R packages. Uses a simple interface and produces clean, informative error messages using 'cli'.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between arg versions 0.1.1 dated 2026-05-27 and 0.2.0 dated 2026-07-15
DESCRIPTION | 10 +- MD5 | 114 ++++++++++++++--------- NAMESPACE | 7 + NEWS.md | 22 ++++ R/arg_between.R | 102 ++++++++++++++------ R/arg_character.R | 30 +++++- R/arg_color.R |only R/arg_data.R | 20 ++-- R/arg_dots_supplied.R | 6 - R/arg_element.R | 4 R/arg_equal.R | 4 R/arg_formula.R | 2 R/arg_function.R | 2 R/arg_index.R | 231 ++++++++++++++++++++++++++++++++++++++--------- R/arg_is.R | 4 R/arg_length.R | 2 R/arg_logical.R | 4 R/arg_named.R | 28 ++++- R/arg_no_NA.R | 10 +- R/arg_non_null.R | 8 - R/arg_numeric.R | 23 ++-- R/arg_or.R | 73 ++++++++------ R/arg_supplied.R | 2 R/arg_symmetric.R | 8 - R/arg_unique.R | 6 - R/err.R | 5 - R/failures.R | 32 ++---- R/match_arg.R | 13 +- R/utils.R | 10 -- R/when_supplied.R | 2 README.md | 13 +- man/arg-package.Rd | 2 man/arg_between.Rd | 5 - man/arg_character.Rd | 7 + man/arg_color.Rd |only man/arg_data.Rd | 2 man/arg_dots_supplied.Rd | 2 man/arg_index.Rd | 60 ++++++++---- man/arg_no_NA.Rd | 4 man/arg_non_null.Rd | 4 man/arg_numeric.Rd | 2 man/arg_or.Rd | 2 man/arg_unique.Rd | 4 man/err.Rd | 2 man/figures |only man/match_arg.Rd | 9 - tests |only 47 files changed, 610 insertions(+), 292 deletions(-)
Title: Dynamic Inferences from Time Series (with Interactions)
Description: Autoregressive distributed lag (A[R]DL) models (and their reparameterized equivalent, the Generalized Error-Correction Model [GECM]) are the workhorse models in uncovering dynamic inferences. ADL models are simple to estimate; this is what makes them attractive. Once these models are estimated, what is less clear is how to uncover a rich set of dynamic inferences from these models. We provide tools for recovering those inferences. These tools apply to traditional time-series quantities of interest and are built from the Impulse Response Function and Step Response Function (sometimes described as a pulse effect or a cumulative effect). They also allow for a variety of shock histories to be applied to the independent variable (beyond just a one-time, one-unit increase) as well as the recovery of inferences in levels for shocks applied to (in)dependent variables in differences (what we call the Generalized Dynamic Response Function). These effects are also available for the general condit [...truncated...]
Author: Soren Jordan [aut, cre, cph] ,
Garrett N. Vande Kamp [aut],
Reshi Rajan [aut]
Maintainer: Soren Jordan <sorenjordanpols@gmail.com>
Diff between tseffects versions 0.2.1 dated 2026-02-05 and 0.3.1 dated 2026-07-15
tseffects-0.2.1/tseffects/README.md |only tseffects-0.2.1/tseffects/man/GDTE.adl.plot.Rd |only tseffects-0.2.1/tseffects/man/GDTE.gecm.plot.Rd |only tseffects-0.2.1/tseffects/tests/testthat/test-GDTE.adl.plot.R |only tseffects-0.2.1/tseffects/tests/testthat/test-GDTE.gecm.plot.R |only tseffects-0.3.1/tseffects/DESCRIPTION | 11 tseffects-0.3.1/tseffects/MD5 | 65 tseffects-0.3.1/tseffects/NAMESPACE | 6 tseffects-0.3.1/tseffects/R/tseffects.R | 1487 ++++++---- tseffects-0.3.1/tseffects/inst/doc/tseffects-vignette.R | 425 ++ tseffects-0.3.1/tseffects/inst/doc/tseffects-vignette.Rmd | 617 +++- tseffects-0.3.1/tseffects/inst/doc/tseffects-vignette.html | 1258 +++++++- tseffects-0.3.1/tseffects/inst/tseffects-manual.pdf |binary tseffects-0.3.1/tseffects/man/GDRF.adl.plot.Rd | 92 tseffects-0.3.1/tseffects/man/GDRF.dummy.checks.Rd |only tseffects-0.3.1/tseffects/man/GDRF.gecm.plot.Rd | 43 tseffects-0.3.1/tseffects/man/adl.dummy.checks.Rd | 6 tseffects-0.3.1/tseffects/man/adl.plot.Rd |only tseffects-0.3.1/tseffects/man/gecm.dummy.checks.Rd | 6 tseffects-0.3.1/tseffects/man/gecm.plot.Rd |only tseffects-0.3.1/tseffects/man/gecm.to.adl.Rd | 8 tseffects-0.3.1/tseffects/man/general.calculator.Rd | 16 tseffects-0.3.1/tseffects/man/get.value.Rd |only tseffects-0.3.1/tseffects/man/interact.adl.plot.Rd | 50 tseffects-0.3.1/tseffects/man/mpoly.subber.Rd |only tseffects-0.3.1/tseffects/man/pulse.calculator.Rd | 6 tseffects-0.3.1/tseffects/man/what.to.return.Rd | 10 tseffects-0.3.1/tseffects/man/yhat.calculator.Rd |only tseffects-0.3.1/tseffects/tests/testthat/test-GDRF.adl.plot.R | 556 +++ tseffects-0.3.1/tseffects/tests/testthat/test-GDRF.dummy.checks.R |only tseffects-0.3.1/tseffects/tests/testthat/test-GDRF.gecm.plot.R | 606 +++- tseffects-0.3.1/tseffects/tests/testthat/test-adl.dummy.checks.R | 14 tseffects-0.3.1/tseffects/tests/testthat/test-adl.plot.R |only tseffects-0.3.1/tseffects/tests/testthat/test-gecm.dummy.checks.R | 85 tseffects-0.3.1/tseffects/tests/testthat/test-gecm.plot.R |only tseffects-0.3.1/tseffects/tests/testthat/test-gecm.to.adl.R | 27 tseffects-0.3.1/tseffects/tests/testthat/test-get.value.R |only tseffects-0.3.1/tseffects/tests/testthat/test-interact.adl.plot.R | 76 tseffects-0.3.1/tseffects/tests/testthat/test-mpoly.subber.R |only tseffects-0.3.1/tseffects/tests/testthat/test-yhat.calculator.R |only tseffects-0.3.1/tseffects/vignettes/timeseries.bib | 27 tseffects-0.3.1/tseffects/vignettes/tseffects-vignette.Rmd | 617 +++- 42 files changed, 4957 insertions(+), 1157 deletions(-)
Title: Measurement and Partitioning of Similarity-Sensitive
Biodiversity
Description: Provides a framework for the measurement and partitioning of
the (similarity-sensitive) biodiversity of a metacommunity and its
constituent subcommunities. Richard Reeve, et al. (2016)
<doi:10.48550/arXiv.1404.6520>.
Author: Sonia Mitchell [aut] ,
Richard Reeve [cre, aut, ths] ,
Tom White [ctb]
Maintainer: Richard Reeve <richard.reeve@glasgow.ac.uk>
Diff between rdiversity versions 2.2.0 dated 2022-05-06 and 2.3.0 dated 2026-07-15
rdiversity-2.2.0/rdiversity/R/binary.R |only rdiversity-2.2.0/rdiversity/man/Ops.binary.Rd |only rdiversity-2.2.0/rdiversity/man/as.binary.Rd |only rdiversity-2.2.0/rdiversity/man/binAdd.Rd |only rdiversity-2.2.0/rdiversity/man/binSeq.Rd |only rdiversity-2.2.0/rdiversity/man/binary.Rd |only rdiversity-2.2.0/rdiversity/man/byte.Rd |only rdiversity-2.2.0/rdiversity/man/bytesNeeded.Rd |only rdiversity-2.2.0/rdiversity/man/fillUpToBit.Rd |only rdiversity-2.2.0/rdiversity/man/fillUpToByte.Rd |only rdiversity-2.2.0/rdiversity/man/is.binary.Rd |only rdiversity-2.2.0/rdiversity/man/loadAttributes.Rd |only rdiversity-2.2.0/rdiversity/man/negate.Rd |only rdiversity-2.2.0/rdiversity/man/print.binary.Rd |only rdiversity-2.2.0/rdiversity/man/saveAttributes.Rd |only rdiversity-2.2.0/rdiversity/man/summary.binary.Rd |only rdiversity-2.2.0/rdiversity/man/switchEndianess.Rd |only rdiversity-2.2.0/rdiversity/tests/testthat/test-README.R |only rdiversity-2.3.0/rdiversity/DESCRIPTION | 47 rdiversity-2.3.0/rdiversity/MD5 | 190 +-- rdiversity-2.3.0/rdiversity/NAMESPACE | 19 rdiversity-2.3.0/rdiversity/NEWS.md | 29 rdiversity-2.3.0/rdiversity/R/ancestral_nodes.R | 6 rdiversity-2.3.0/rdiversity/R/bits.R |only rdiversity-2.3.0/rdiversity/R/chainsaw.R | 93 - rdiversity-2.3.0/rdiversity/R/check_phypartition.R | 34 rdiversity-2.3.0/rdiversity/R/check_similarity.R | 11 rdiversity-2.3.0/rdiversity/R/class-distance.R | 9 rdiversity-2.3.0/rdiversity/R/class-metacommunity.R | 25 rdiversity-2.3.0/rdiversity/R/class-powermean.R | 20 rdiversity-2.3.0/rdiversity/R/class-relativeentropy.R | 20 rdiversity-2.3.0/rdiversity/R/class-similarity.R | 10 rdiversity-2.3.0/rdiversity/R/descendant_tips.R | 8 rdiversity-2.3.0/rdiversity/R/dist2sim.R | 52 rdiversity-2.3.0/rdiversity/R/distance.R | 58 rdiversity-2.3.0/rdiversity/R/diversity-components.R | 70 - rdiversity-2.3.0/rdiversity/R/diversity-measures.R | 98 - rdiversity-2.3.0/rdiversity/R/gen2dist.r | 55 rdiversity-2.3.0/rdiversity/R/geneid.R | 12 rdiversity-2.3.0/rdiversity/R/hs_parameters.R | 21 rdiversity-2.3.0/rdiversity/R/inddiv.R | 120 + rdiversity-2.3.0/rdiversity/R/melt_matrix.R |only rdiversity-2.3.0/rdiversity/R/metacommunity.R | 338 ++--- rdiversity-2.3.0/rdiversity/R/metadiv.R | 172 +- rdiversity-2.3.0/rdiversity/R/phy2branch.R | 21 rdiversity-2.3.0/rdiversity/R/phy2dist.R | 5 rdiversity-2.3.0/rdiversity/R/phy_struct.R | 23 rdiversity-2.3.0/rdiversity/R/power_mean.R | 50 rdiversity-2.3.0/rdiversity/R/powermean.R | 34 rdiversity-2.3.0/rdiversity/R/rdiversity-package.R | 16 rdiversity-2.3.0/rdiversity/R/relativeentropy.R | 52 rdiversity-2.3.0/rdiversity/R/repartition.R | 48 rdiversity-2.3.0/rdiversity/R/similarity.R | 86 - rdiversity-2.3.0/rdiversity/R/smatrix.R | 4 rdiversity-2.3.0/rdiversity/R/subdiv.R | 168 +- rdiversity-2.3.0/rdiversity/R/summarise.R | 6 rdiversity-2.3.0/rdiversity/R/tax2dist.R | 42 rdiversity-2.3.0/rdiversity/R/taxfac.R | 3 rdiversity-2.3.0/rdiversity/R/taxid.R | 9 rdiversity-2.3.0/rdiversity/R/taxmask.R | 3 rdiversity-2.3.0/rdiversity/R/taxvec.R | 19 rdiversity-2.3.0/rdiversity/R/zmatrix.R | 26 rdiversity-2.3.0/rdiversity/README.md | 4 rdiversity-2.3.0/rdiversity/build/vignette.rds |binary rdiversity-2.3.0/rdiversity/inst/doc/examples.R | 75 - rdiversity-2.3.0/rdiversity/inst/doc/examples.Rmd | 37 rdiversity-2.3.0/rdiversity/inst/doc/examples.html | 620 +++------- rdiversity-2.3.0/rdiversity/man/gen2dist.Rd | 10 rdiversity-2.3.0/rdiversity/man/inddiv.Rd | 4 rdiversity-2.3.0/rdiversity/man/meta_gamma.Rd | 4 rdiversity-2.3.0/rdiversity/man/metacommunity-methods.Rd | 2 rdiversity-2.3.0/rdiversity/man/metadiv.Rd | 2 rdiversity-2.3.0/rdiversity/man/norm_alpha.Rd | 4 rdiversity-2.3.0/rdiversity/man/norm_beta.Rd | 4 rdiversity-2.3.0/rdiversity/man/norm_meta_alpha.Rd | 4 rdiversity-2.3.0/rdiversity/man/norm_meta_beta.Rd | 4 rdiversity-2.3.0/rdiversity/man/norm_meta_rho.Rd | 4 rdiversity-2.3.0/rdiversity/man/norm_rho.Rd | 4 rdiversity-2.3.0/rdiversity/man/norm_sub_alpha.Rd | 4 rdiversity-2.3.0/rdiversity/man/norm_sub_beta.Rd | 4 rdiversity-2.3.0/rdiversity/man/norm_sub_rho.Rd | 4 rdiversity-2.3.0/rdiversity/man/raw_alpha.Rd | 4 rdiversity-2.3.0/rdiversity/man/raw_beta.Rd | 4 rdiversity-2.3.0/rdiversity/man/raw_gamma.Rd | 4 rdiversity-2.3.0/rdiversity/man/raw_meta_alpha.Rd | 4 rdiversity-2.3.0/rdiversity/man/raw_meta_beta.Rd | 4 rdiversity-2.3.0/rdiversity/man/raw_meta_rho.Rd | 4 rdiversity-2.3.0/rdiversity/man/raw_rho.Rd | 4 rdiversity-2.3.0/rdiversity/man/raw_sub_alpha.Rd | 4 rdiversity-2.3.0/rdiversity/man/raw_sub_beta.Rd | 4 rdiversity-2.3.0/rdiversity/man/raw_sub_rho.Rd | 4 rdiversity-2.3.0/rdiversity/man/rdiversity-package.Rd | 16 rdiversity-2.3.0/rdiversity/man/sub_gamma.Rd | 4 rdiversity-2.3.0/rdiversity/man/subdiv.Rd | 4 rdiversity-2.3.0/rdiversity/tests/testthat/test-bits.R |only rdiversity-2.3.0/rdiversity/tests/testthat/test-chainsaw.R | 130 +- rdiversity-2.3.0/rdiversity/tests/testthat/test-check_partition.R | 30 rdiversity-2.3.0/rdiversity/tests/testthat/test-diversity-components.R | 105 + rdiversity-2.3.0/rdiversity/tests/testthat/test-diversity-measures.R |only rdiversity-2.3.0/rdiversity/tests/testthat/test-gen2dist.R |only rdiversity-2.3.0/rdiversity/tests/testthat/test-inddiv.R |only rdiversity-2.3.0/rdiversity/tests/testthat/test-metacommunity.R | 104 + rdiversity-2.3.0/rdiversity/tests/testthat/test-metadiv.R | 42 rdiversity-2.3.0/rdiversity/tests/testthat/test-phylo.R | 48 rdiversity-2.3.0/rdiversity/tests/testthat/test-power.mean.R | 10 rdiversity-2.3.0/rdiversity/tests/testthat/test-repartition.R |only rdiversity-2.3.0/rdiversity/tests/testthat/test-show-methods.R |only rdiversity-2.3.0/rdiversity/tests/testthat/test-subdiv.R | 48 rdiversity-2.3.0/rdiversity/vignettes/examples.Rmd | 37 109 files changed, 1891 insertions(+), 1653 deletions(-)
Title: Spatiotemporal Propagation for Multivariate Bayesian Dynamic
Learning
Description: Implementation of the Forward Filtering Backward Sampling (FFBS) algorithm with Dynamic Bayesian Predictive Stacking (DYNBPS) integration for multivariate spatiotemporal models, as introduced in "Adaptive Markovian Spatiotemporal Transfer Learning in Multivariate Bayesian Modeling" (Presicce and Banerjee, 2026+) <doi:10.48550/arXiv.2602.08544>. This methodology enables efficient Bayesian multivariate spatiotemporal modeling, utilizing dynamic predictive stacking to improve inference across multivariate time series of spatial datasets. The core functions leverage 'C++' for high-performance computation, making the framework well-suited for large-scale spatiotemporal data analysis in parallel computing environments.
Author: Luca Presicce [aut, cre]
Maintainer: Luca Presicce <l.presicce@campus.unimib.it>
Diff between spFFBS versions 0.0-2 dated 2026-04-22 and 1.0-1 dated 2026-07-15
spFFBS-0.0-2/spFFBS/man/sample_index.Rd |only spFFBS-1.0-1/spFFBS/DESCRIPTION | 10 spFFBS-1.0-1/spFFBS/MD5 | 34 spFFBS-1.0-1/spFFBS/NAMESPACE | 1 spFFBS-1.0-1/spFFBS/R/FFBS-DYNBPS-v2.R |only spFFBS-1.0-1/spFFBS/R/FFBS-DYNBPS.R | 730 +++---- spFFBS-1.0-1/spFFBS/R/RcppExports.R | 76 spFFBS-1.0-1/spFFBS/README.md | 47 spFFBS-1.0-1/spFFBS/inst/doc/tutorial.R | 17 spFFBS-1.0-1/spFFBS/inst/doc/tutorial.Rmd | 17 spFFBS-1.0-1/spFFBS/inst/doc/tutorial.html | 29 spFFBS-1.0-1/spFFBS/man/compute_Wt.Rd | 21 spFFBS-1.0-1/spFFBS/man/make_prior.Rd |only spFFBS-1.0-1/spFFBS/man/spFFBS.Rd | 133 - spFFBS-1.0-1/spFFBS/src/FFBS-DYNBPS-struct-v2.cpp |only spFFBS-1.0-1/spFFBS/src/FFBS-DYNBPS-struct.cpp | 2214 +++++++++++----------- spFFBS-1.0-1/spFFBS/src/Makevars | 2 spFFBS-1.0-1/spFFBS/src/Makevars.win | 2 spFFBS-1.0-1/spFFBS/src/RcppExports.cpp | 336 +-- spFFBS-1.0-1/spFFBS/vignettes/tutorial.Rmd | 17 20 files changed, 1814 insertions(+), 1872 deletions(-)
Title: Helper Functions for Bayesian Analyses
Description: Functions to 'numericise' 'R' objects (coerce to numeric
objects), summarise 'MCMC' (Monte Carlo Markov Chain) samples and
calculate deviance residuals as well as 'R' translations of some
'BUGS' (Bayesian Using Gibbs Sampling), 'JAGS' (Just Another Gibbs
Sampler), 'STAN' and 'TMB' (Template Model Builder) functions.
Author: Nicole Hill [aut, cre] ,
Joe Thorley [aut] ,
Kirill Mueller [ctb] ,
Nadine Hussein [ctb] ,
Stefano Mezzini [aut] ,
Poisson Consulting [cph, fnd]
Maintainer: Nicole Hill <nicole@poissonconsulting.ca>
Diff between extras versions 0.8.0 dated 2025-01-13 and 0.10.0 dated 2026-07-15
DESCRIPTION | 24 MD5 | 393 ++++--- NAMESPACE | 66 + NEWS.md | 24 R/as-list.R | 3 R/bern.R | 10 R/chk-index.R | 4 R/chk-indices.R | 4 R/chk-pars.R | 4 R/ci.R |only R/ci_eti.R |only R/ci_hdi.R |only R/dev.R | 37 R/direction.R |only R/directional-information.R |only R/log-lik.R | 547 +++++++++- R/params.R | 18 R/pextreme.R | 2 R/prob.R |only R/probability-direction.R |only R/pvalue.R | 78 + R/quant.R |only R/ran.R | 22 R/res.R | 256 +++- R/rope.R |only R/sens.R | 66 + R/sextreme.R | 2 R/skewlnorm.R |only R/skewnorm.R | 64 - R/svalue.R | 63 + R/zzz.R | 2 README.md | 8 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 10 inst/doc/beta-binomial-deviance-residuals.html | 6 inst/doc/deviance-residuals.html | 5 man/as_list_unnamed.Rd | 1 man/bern.Rd | 2 man/dev_bern.Rd | 25 man/dev_beta_binom.Rd | 25 man/dev_binom.Rd | 25 man/dev_gamma.Rd | 25 man/dev_gamma_pois.Rd | 25 man/dev_lnorm.Rd | 25 man/dev_neg_binom.Rd | 25 man/dev_norm.Rd | 25 man/dev_pois.Rd | 25 man/dev_pois_zi.Rd | 25 man/dev_skewlnorm.Rd |only man/dev_skewnorm.Rd | 25 man/dev_student.Rd | 25 man/direction.Rd |only man/directional-information.Rd |only man/exp10.Rd | 34 man/exp2.Rd | 34 man/extras-package.Rd | 2 man/fabs.Rd | 34 man/fill_all.Rd | 4 man/fill_na.Rd | 4 man/ilog.Rd | 34 man/ilog10.Rd | 34 man/ilog2.Rd | 34 man/ilogit.Rd | 36 man/inv_logit.Rd | 36 man/inv_odds.Rd | 14 man/invlogit.Rd | 36 man/kurtosis.Rd | 29 man/log-set.Rd | 34 man/log10-set.Rd | 34 man/log2-set.Rd | 34 man/log_lik_bern.Rd | 30 man/log_lik_beta.Rd |only man/log_lik_beta_binom.Rd | 44 man/log_lik_binom.Rd | 36 man/log_lik_exp.Rd |only man/log_lik_gamma.Rd | 36 man/log_lik_gamma_pois.Rd | 36 man/log_lik_gamma_pois_zi.Rd | 43 man/log_lik_lnorm.Rd | 36 man/log_lik_neg_binom.Rd | 36 man/log_lik_norm.Rd | 36 man/log_lik_pois.Rd | 36 man/log_lik_pois_zi.Rd | 36 man/log_lik_skewlnorm.Rd |only man/log_lik_skewnorm.Rd | 36 man/log_lik_student.Rd | 36 man/log_lik_unif.Rd |only man/log_odds-set.Rd | 14 man/log_odds.Rd | 14 man/log_odds_ratio.Rd | 14 man/log_odds_ratio2.Rd | 4 man/logit-set.Rd | 34 man/logit.Rd | 36 man/lower.Rd | 29 man/odds-set.Rd | 14 man/odds.Rd | 14 man/odds_ratio.Rd | 14 man/odds_ratio2.Rd | 4 man/params.Rd | 25 man/pextreme.Rd | 4 man/phi.Rd | 36 man/pow.Rd | 34 man/prob_bern.Rd |only man/prob_beta.Rd |only man/prob_beta_binom.Rd |only man/prob_binom.Rd |only man/prob_exp.Rd |only man/prob_gamma.Rd |only man/prob_gamma_pois.Rd |only man/prob_gamma_pois_zi.Rd |only man/prob_lnorm.Rd |only man/prob_neg_binom.Rd |only man/prob_norm.Rd |only man/prob_pois.Rd |only man/prob_pois_zi.Rd |only man/prob_skewlnorm.Rd |only man/prob_skewnorm.Rd |only man/prob_student.Rd |only man/prob_unif.Rd |only man/probability_direction.Rd |only man/proportional_change.Rd | 4 man/proportional_change2.Rd | 4 man/proportional_difference.Rd | 4 man/proportional_difference2.Rd | 4 man/pvalue.Rd | 69 + man/pzeros.Rd | 29 man/quant_bern.Rd |only man/quant_beta.Rd |only man/quant_binom.Rd |only man/quant_exp.Rd |only man/quant_gamma.Rd |only man/quant_gamma_pois.Rd |only man/quant_gamma_pois_zi.Rd |only man/quant_lnorm.Rd |only man/quant_neg_binom.Rd |only man/quant_norm.Rd |only man/quant_pois.Rd |only man/quant_pois_zi.Rd |only man/quant_skewlnorm.Rd |only man/quant_skewnorm.Rd |only man/quant_student.Rd |only man/quant_unif.Rd |only man/ran_bern.Rd | 27 man/ran_beta_binom.Rd | 27 man/ran_binom.Rd | 27 man/ran_gamma.Rd | 27 man/ran_gamma_pois.Rd | 27 man/ran_gamma_pois_zi.Rd | 27 man/ran_lnorm.Rd | 27 man/ran_neg_binom.Rd | 27 man/ran_norm.Rd | 27 man/ran_pois.Rd | 27 man/ran_pois_zi.Rd | 27 man/ran_skewlnorm.Rd |only man/ran_skewnorm.Rd | 27 man/ran_student.Rd | 27 man/res_bern.Rd | 27 man/res_beta_binom.Rd | 27 man/res_binom.Rd | 27 man/res_gamma.Rd | 27 man/res_gamma_pois.Rd | 27 man/res_gamma_pois_zi.Rd | 27 man/res_lnorm.Rd | 27 man/res_neg_binom.Rd | 27 man/res_norm.Rd | 27 man/res_pois.Rd | 27 man/res_pois_zi.Rd | 27 man/res_skewlnorm.Rd |only man/res_skewnorm.Rd | 27 man/res_student.Rd | 27 man/sens_beta.Rd | 27 man/sens_exp.Rd | 23 man/sens_gamma.Rd | 23 man/sens_gamma_pois.Rd | 23 man/sens_gamma_pois_zi.Rd | 23 man/sens_lnorm.Rd | 23 man/sens_neg_binom.Rd | 23 man/sens_norm.Rd | 23 man/sens_pois.Rd | 23 man/sens_skewlnorm.Rd |only man/sens_skewnorm.Rd | 23 man/sens_student.Rd | 23 man/sextreme.Rd | 4 man/skewlnorm.Rd |only man/skewness.Rd | 29 man/skewnorm.Rd | 2 man/step.Rd | 34 man/svalue.Rd | 94 + man/upper.Rd | 29 man/variance.Rd | 29 man/xtr_ci.Rd |only man/xtr_ci_eti.Rd |only man/xtr_ci_hdi.Rd |only man/xtr_mean.Rd | 29 man/xtr_median.Rd | 29 man/xtr_rope.Rd |only man/xtr_sd.Rd | 29 man/zeros.Rd | 29 man/zscore.Rd | 29 tests/testthat/_snaps/dev.md | 2 tests/testthat/_snaps/log-lik.md | 2 tests/testthat/test-as-list.R | 7 tests/testthat/test-chk-index.R | 3 tests/testthat/test-chk-indices.R | 6 tests/testthat/test-chk-pars.R | 8 tests/testthat/test-ci-eti.R |only tests/testthat/test-ci-hdi.R |only tests/testthat/test-ci.R |only tests/testthat/test-dev.R | 592 +++++++---- tests/testthat/test-direction.R |only tests/testthat/test-directional-information.R |only tests/testthat/test-exp.R | 88 + tests/testthat/test-fill-all.R | 15 tests/testthat/test-fill-na.R | 4 tests/testthat/test-ilog.R | 450 ++++++-- tests/testthat/test-log-lik.R | 907 ++++++++++++++++- tests/testthat/test-log.R | 336 +++++- tests/testthat/test-numericise.R | 18 tests/testthat/test-pextreme.R | 7 tests/testthat/test-prob.R |only tests/testthat/test-probability-direction.R |only tests/testthat/test-pvalue.R | 180 +++ tests/testthat/test-quant.R |only tests/testthat/test-ran.R | 567 ++++++---- tests/testthat/test-res.R | 1319 ++++++++++++++++++------- tests/testthat/test-rope.R |only tests/testthat/test-sens.R | 307 +++++ tests/testthat/test-sextreme.R | 37 tests/testthat/test-skewlnorm.R |only tests/testthat/test-skewnorm.R | 200 ++- tests/testthat/test-svalue.R | 88 + 232 files changed, 7089 insertions(+), 2748 deletions(-)
Title: Linear Models for Sequence Count Data
Description: Provides scalable generalized linear and mixed effects models tailored for sequence count data analysis (e.g., analysis of 16S or RNA-seq data). Uses Dirichlet-multinomial sampling to quantify uncertainty in relative abundance or relative expression conditioned on observed count data.
Implements scale models as a generalization of normalizations which account for uncertainty in scale (e.g., total abundances) as described in Nixon et al. (2025) <doi:10.1186/s13059-025-03609-3> and McGovern et al. (2025) <doi:10.1101/2025.08.05.668734>.
Author: Justin Silverman [aut, cre],
Greg Gloor [aut],
Kyle McGovern [aut, ctb]
Maintainer: Justin Silverman <JustinSilverman@psu.edu>
Diff between ALDEx3 versions 1.0.2 dated 2026-02-05 and 1.2.0 dated 2026-07-15
DESCRIPTION | 16 +- MD5 | 42 +++-- NAMESPACE | 15 + NEWS.md | 29 +++ R/aldex-summary.R | 200 +++++++++++++++++++++---- R/aldex.R | 32 ++-- R/aldex.plot.R |only R/blmm.R |only README.md | 13 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/ALDEx3-Quickstart.Rmd | 88 ++++++----- inst/doc/ALDEx3-Quickstart.html | 287 ++++++++++++++++++++---------------- inst/doc/ALDEx3-mixed-effects.R |only inst/doc/ALDEx3-mixed-effects.Rmd |only inst/doc/ALDEx3-mixed-effects.html |only man/aldex.Rd | 21 ++ man/aldex.effect.Rd |only man/aldex.plot.Rd |only man/blmm.Rd |only man/cohensd.Rd | 12 - src |only tests/testthat/test-aldex-summary.R | 70 +++++++- tests/testthat/test-blmm.R |only vignettes/ALDEx3-Quickstart.Rmd | 88 ++++++----- vignettes/ALDEx3-mixed-effects.Rmd |only vignettes/images |only 27 files changed, 623 insertions(+), 290 deletions(-)
Title: Extending 'mlr3' to Functional Data Analysis
Description: Extends the 'mlr3' ecosystem to functional analysis by adding
support for irregular and regular functional data as defined in the
'tf' package. The package provides 'PipeOps' for preprocessing
functional columns and for extracting scalar features, thereby
allowing standard machine learning algorithms to be applied
afterwards. Available operations include simple functional features
such as the mean or maximum, smoothing, interpolation, flattening, and
functional 'PCA'.
Author: Maximilian Muecke [aut, cre] ,
Sebastian Fischer [aut] ,
Fabian Scheipl [ctb] ,
Bernd Bischl [ctb]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between mlr3fda versions 0.7.0 dated 2026-07-02 and 0.7.1 dated 2026-07-15
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ README.md | 2 ++ tests/testthat/test_PipeOpFDACor.R | 7 ++++++- tests/testthat/test_PipeOpFDAInterpol.R | 4 +++- tests/testthat/test_tf.R | 29 ++++++++++++++++++++--------- 7 files changed, 44 insertions(+), 20 deletions(-)
Title: German Election Database (GERDA)
Description: Provides tools to download datasets of German elections
covering local, state, federal, mayoral, European Parliament, and county
(Kreistag) elections, with federal county-level coverage from 1953 and
other families extending through 2025. The package supplies turnout, vote
shares, and derived indicators at the municipal and county level, including
geographically harmonized datasets that account for changes in municipal
boundaries over time and incorporate mail-in voting districts. Bundled data
includes county-level INKAR covariates (1995-2022) and municipality-level
Zensus 2022 indicators. Data is sourced from
<https://github.com/awiedem/german_election_data>.
Author: Hanno Hilbig [aut, cre]
Maintainer: Hanno Hilbig <hhilbig@ucdavis.edu>
Diff between gerda versions 0.6.0 dated 2026-04-20 and 0.7.1 dated 2026-07-15
DESCRIPTION | 8 MD5 | 30 +- NAMESPACE | 2 NEWS.md | 44 +++ R/gerda_cache.R |only R/gerda_catalog.R |only R/gerda_data_list.R | 80 ++---- R/load_gerda_web.R | 302 +++++++++++--------------- README.md | 5 inst/doc/gerda.html | 138 ++++++----- man/clear_gerda_cache.Rd |only man/gerda_cache_dir.Rd |only man/gerda_data_list.Rd | 27 ++ man/load_gerda_web.Rd | 21 + tests/testthat/test-gerda_catalog.R |only tests/testthat/test-gerda_data_list.R | 28 ++ tests/testthat/test-load_gerda_web-catalog.R | 45 +++ tests/testthat/test-load_gerda_web-download.R |only tests/testthat/test-load_gerda_web-schema.R | 2 19 files changed, 419 insertions(+), 313 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in
parallel, so metadata resolution and package downloads are fast.
Metadata and package files are cached on the local disk as well. 'pak'
has a dependency solver, so it finds version conflicts before
performing the installation. This version of 'pak' supports CRAN,
'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Posit Software, PBC [cph, fnd] ,
Winston Chang [ctb] ,
Ascent Digital Services [cph, fnd] ,
Hadley Wickham [ctb, cph] ,
Jeroen Ooms [ctb] ,
Maelle Salmon [ctb] ,
Duncan Temple Lang [ctb] ,
Lloyd Hilaiel [cph [...truncated...]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.10.0 dated 2026-06-07 and 0.11.0 dated 2026-07-15
pak-0.10.0/pak/src/library/curl/src/typelist.h |only pak-0.10.0/pak/src/library/curl/tools/typelist.R |only pak-0.10.0/pak/src/library/curl/tools/typelist.h.in |only pak-0.10.0/pak/src/library/tsitter/man/macros/eval2.Rd |only pak-0.11.0/pak/DESCRIPTION | 6 pak-0.11.0/pak/MD5 | 298 pak-0.11.0/pak/NEWS.md | 71 pak-0.11.0/pak/R/docs.R | 5 pak-0.11.0/pak/R/pak-update.R | 29 pak-0.11.0/pak/R/push-packages.R | 93 pak-0.11.0/pak/R/subprocess.R | 2 pak-0.11.0/pak/src/library/curl.patch | 47 pak-0.11.0/pak/src/library/curl/DESCRIPTION | 37 pak-0.11.0/pak/src/library/curl/LICENSE | 4 pak-0.11.0/pak/src/library/curl/NAMESPACE | 6 pak-0.11.0/pak/src/library/curl/NEWS | 73 pak-0.11.0/pak/src/library/curl/R/curl.R | 12 pak-0.11.0/pak/src/library/curl/R/download.R | 20 pak-0.11.0/pak/src/library/curl/R/echo.R | 23 pak-0.11.0/pak/src/library/curl/R/email.R | 48 pak-0.11.0/pak/src/library/curl/R/errcodes.R |only pak-0.11.0/pak/src/library/curl/R/fetch.R | 53 pak-0.11.0/pak/src/library/curl/R/form.R | 4 pak-0.11.0/pak/src/library/curl/R/handle.R | 49 pak-0.11.0/pak/src/library/curl/R/multi.R | 63 pak-0.11.0/pak/src/library/curl/R/multi_download.R | 59 pak-0.11.0/pak/src/library/curl/R/nslookup.R | 12 pak-0.11.0/pak/src/library/curl/R/onload.R | 47 pak-0.11.0/pak/src/library/curl/R/options.R | 56 pak-0.11.0/pak/src/library/curl/R/parser.R |only pak-0.11.0/pak/src/library/curl/R/sysdata.rda |binary pak-0.11.0/pak/src/library/curl/R/upload.R | 10 pak-0.11.0/pak/src/library/curl/R/utilities.R | 35 pak-0.11.0/pak/src/library/curl/R/writer.R | 6 pak-0.11.0/pak/src/library/curl/cleanup | 3 pak-0.11.0/pak/src/library/curl/configure | 51 pak-0.11.0/pak/src/library/curl/inst/WORDLIST | 8 pak-0.11.0/pak/src/library/curl/src/Makevars.in | 6 pak-0.11.0/pak/src/library/curl/src/Makevars.win | 16 pak-0.11.0/pak/src/library/curl/src/callbacks.c | 4 pak-0.11.0/pak/src/library/curl/src/curl-common.h | 26 pak-0.11.0/pak/src/library/curl/src/curl.c | 67 pak-0.11.0/pak/src/library/curl/src/download.c | 10 pak-0.11.0/pak/src/library/curl/src/dryrun.c |only pak-0.11.0/pak/src/library/curl/src/handle.c | 216 pak-0.11.0/pak/src/library/curl/src/ieproxy.c | 6 pak-0.11.0/pak/src/library/curl/src/init.c | 16 pak-0.11.0/pak/src/library/curl/src/interrupt.c | 32 pak-0.11.0/pak/src/library/curl/src/macos-polyfill.h |only pak-0.11.0/pak/src/library/curl/src/multi.c | 53 pak-0.11.0/pak/src/library/curl/src/options.c | 4 pak-0.11.0/pak/src/library/curl/src/split.c | 2 pak-0.11.0/pak/src/library/curl/src/ssl.c | 2 pak-0.11.0/pak/src/library/curl/src/typechecking.c | 28 pak-0.11.0/pak/src/library/curl/src/urlparser.c |only pak-0.11.0/pak/src/library/curl/src/utils.c | 86 pak-0.11.0/pak/src/library/curl/src/version.c | 58 pak-0.11.0/pak/src/library/curl/tools/errorcodes.txt |only pak-0.11.0/pak/src/library/curl/tools/make-errorcodes.R |only pak-0.11.0/pak/src/library/curl/tools/symbols-in-versions | 124 pak-0.11.0/pak/src/library/curl/tools/symbols.R | 23 pak-0.11.0/pak/src/library/curl/tools/testversion.R |only pak-0.11.0/pak/src/library/curl/tools/version.c |only pak-0.11.0/pak/src/library/curl/tools/winlibs.R | 30 pak-0.11.0/pak/src/library/curl/vignettes/intro.Rmd |only pak-0.11.0/pak/src/library/curl/vignettes/windows.Rmd | 14 pak-0.11.0/pak/src/library/pkgcache/DESCRIPTION | 4 pak-0.11.0/pak/src/library/pkgcache/NEWS.md | 15 pak-0.11.0/pak/src/library/pkgcache/R/aaa-async.R | 604 pak-0.11.0/pak/src/library/pkgcache/R/async-http.R | 100 pak-0.11.0/pak/src/library/pkgcache/R/bioc.R | 4 pak-0.11.0/pak/src/library/pkgcache/R/metadata-cache.R | 4 pak-0.11.0/pak/src/library/pkgcache/R/package-cache.R | 44 pak-0.11.0/pak/src/library/pkgcache/R/packages-gz.R | 76 pak-0.11.0/pak/src/library/pkgcache/R/platform.R | 2 pak-0.11.0/pak/src/library/pkgcache/R/ppm-sso.R | 4 pak-0.11.0/pak/src/library/pkgdepends/DESCRIPTION | 3 pak-0.11.0/pak/src/library/pkgdepends/R/config.R | 84 pak-0.11.0/pak/src/library/pkgdepends/R/docs.R | 52 pak-0.11.0/pak/src/library/pkgdepends/R/gh-app.R | 101 pak-0.11.0/pak/src/library/pkgdepends/R/git-app.R | 7 pak-0.11.0/pak/src/library/pkgdepends/R/install-binary.R | 9 pak-0.11.0/pak/src/library/pkgdepends/R/install-plan.R | 29 pak-0.11.0/pak/src/library/pkgdepends/R/install-verify-binary.R | 27 pak-0.11.0/pak/src/library/pkgdepends/R/name-check.R | 4 pak-0.11.0/pak/src/library/pkgdepends/R/resolution.R | 15 pak-0.11.0/pak/src/library/pkgdepends/R/solve.R | 30 pak-0.11.0/pak/src/library/pkgdepends/R/type-bioc.R | 10 pak-0.11.0/pak/src/library/pkgdepends/R/type-cran.R | 10 pak-0.11.0/pak/src/library/pkgdepends/R/type-github.R | 271 pak-0.11.0/pak/src/library/pkgdepends/R/type-installed.R | 44 pak-0.11.0/pak/src/library/pkgdepends/R/type-standard.R | 12 pak-0.11.0/pak/src/library/pkgdepends/R/utils.R | 31 pak-0.11.0/pak/src/library/pkgdepends/R/zzz-pkgdepends-config.R | 117 pak-0.11.0/pak/src/library/pkgdepends/inst/WORDLIST | 2 pak-0.11.0/pak/src/library/pkgdepends/inst/docs/pak-config-docs.rds |binary pak-0.11.0/pak/src/library/zip/DESCRIPTION | 19 pak-0.11.0/pak/src/library/zip/NEWS.md | 90 pak-0.11.0/pak/src/library/zip/R/compat-vctrs.R | 2 pak-0.11.0/pak/src/library/zip/R/http.R |only pak-0.11.0/pak/src/library/zip/R/inflate.R | 18 pak-0.11.0/pak/src/library/zip/R/process.R | 181 pak-0.11.0/pak/src/library/zip/R/threaded.R |only pak-0.11.0/pak/src/library/zip/R/utils.R | 169 pak-0.11.0/pak/src/library/zip/R/zip.R | 270 pak-0.11.0/pak/src/library/zip/man |only pak-0.11.0/pak/src/library/zip/src/Makevars | 22 pak-0.11.0/pak/src/library/zip/src/Makevars.win | 29 pak-0.11.0/pak/src/library/zip/src/cleancall.c |only pak-0.11.0/pak/src/library/zip/src/cleancall.h |only pak-0.11.0/pak/src/library/zip/src/cmdunzip_lib.c |only pak-0.11.0/pak/src/library/zip/src/crypto.c |only pak-0.11.0/pak/src/library/zip/src/crypto.h |only pak-0.11.0/pak/src/library/zip/src/errors.c |only pak-0.11.0/pak/src/library/zip/src/errors.h |only pak-0.11.0/pak/src/library/zip/src/init.c | 42 pak-0.11.0/pak/src/library/zip/src/install.libs.R | 2 pak-0.11.0/pak/src/library/zip/src/mbedtls |only pak-0.11.0/pak/src/library/zip/src/miniz.c |11498 +++++----- pak-0.11.0/pak/src/library/zip/src/miniz.h | 1946 - pak-0.11.0/pak/src/library/zip/src/rzip.c | 358 pak-0.11.0/pak/src/library/zip/src/tools/cmdunzip.c | 57 pak-0.11.0/pak/src/library/zip/src/tools/cmdzip.c | 57 pak-0.11.0/pak/src/library/zip/src/unixutils.c | 2 pak-0.11.0/pak/src/library/zip/src/zip.c | 1273 + pak-0.11.0/pak/src/library/zip/src/zip.h | 69 pak-0.11.0/pak/src/library/zip/tools/extra |only pak-0.11.0/pak/src/library/zip/tools/getzipexe.R | 4 pak-0.11.0/pak/src/library/zip/tools/valgrind.supp |only pak-0.11.0/pak/tests/testthat/test-create-pak-repo.R | 106 130 files changed, 12007 insertions(+), 7975 deletions(-)
Title: Baseline Package for Reading Actigraphy and Activity Data
Description: Provides baseline functions for reading actigraphy and activity
data, relying on baseline functions from 'actibase'. Reads data from
'Axivity' 'CWA' <https://axivity.com/> ,
ActiGraph 'GT3X' <https://ametris.com/actigraph-wgt3x-bt>,
'SensorLog' <https://sensorlog.berndthomas.net/>, and
'SensorLogger' <https://www.tszheichoi.com/sensorlogger> zipped CSV files.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between actiread versions 0.2.0 dated 2026-07-07 and 0.3.0 dated 2026-07-15
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 6 +++++- R/acti_process_header.R |only R/acti_read_cwa.R | 13 +++++-------- R/acti_read_gt3x.R | 18 +++++------------- 6 files changed, 23 insertions(+), 29 deletions(-)
Title: A Fast Permutation-Based Split-Half Reliability Algorithm
Description: Accurately estimates the reliability of cognitive tasks using a fast and flexible permutation-based split-half reliability algorithm that supports stratified splitting while maintaining equal split sizes. See Kahveci, Bathke, and Blechert (2025) <doi:10.3758/s13423-024-02597-y> for details.
Author: Sercan Kahveci [aut, cre]
Maintainer: Sercan Kahveci <sercan.kahveci@plus.ac.at>
Diff between rapidsplithalf versions 0.7 dated 2026-04-15 and 0.8 dated 2026-07-15
DESCRIPTION | 6 +-- MD5 | 25 +++++++----- NAMESPACE | 1 R/RcppExports.R | 24 ++++++++++++ R/helpers.R | 18 +++------ R/loo.R |only R/rapidsplit.R | 3 + inst/doc/rapidsplithalf.html | 18 ++++----- man/figures/README-iatrel-1.png |binary man/figures/README-plotter-1.png |binary man/figures/README-plotter2-1.png |binary man/loo.rapidsplit.Rd |only man/rapidsplit.Rd | 3 + src/RcppExports.cpp | 75 ++++++++++++++++++++++++++++++++++++++ src/loo.cpp |only 15 files changed, 137 insertions(+), 36 deletions(-)
More information about rapidsplithalf at CRAN
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Title: Simulation and Moment Computation for Order Statistics
Description: Provides a comprehensive set of tools for working with order statistics,
including functions for simulating order statistics, censored samples (Type I and Type II),
and record values from various continuous distributions. Additionally, it offers functions
to compute moments (mean, variance, skewness, kurtosis) of order statistics for several
continuous distributions. These tools assist researchers and statisticians in understanding
and analyzing the properties of order statistics and related data. The methods and algorithms
implemented in this package are based on several published works, including
Ahsanullah et al (2013, ISBN:9789491216831),
Arnold and Balakrishnan (2012, ISBN:1461236444),
Harter and Balakrishnan (1996, ISBN:9780849394522),
Balakrishnan and Sandhu (1995) <doi:10.1080/00031305.1995.10476150>,
Genç (2012) <doi:10.1007/s00362-010-0320-y>,
Makouei et al (2021) <doi:10.1016/j.cam.2021.113386> and
Nagaraja (2013) <doi:10.1016/j.spl.2013.06.028>.
Author: Reyhaneh Arafeh [aut, cre],
Mahdi Salehi [aut]
Maintainer: Reyhaneh Arafeh <reyhane.arafe@gmail.com>
Diff between mos versions 0.1.3 dated 2025-06-16 and 0.1.4 dated 2026-07-15
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 6 +++++- R/functions.R | 9 +++++---- build/vignette.rds |binary inst/doc/mos.html | 15 ++++++++------- 6 files changed, 27 insertions(+), 21 deletions(-)
Title: Analyzing the Behaviour of Wind Generated by Tropical Storms and
Cyclones
Description: Set of functions to quantify and map the
behaviour of winds generated by tropical storms and cyclones in space
and time. It includes functions to compute and analyze fields such as the maximum sustained wind field, power dissipation index and duration of exposure to winds above a given threshold. It also includes functions to map the trajectories as well as characteristics of the storms.
Author: Baptiste Delaporte [aut],
Thomas Ibanez [aut] ,
Gunnar Keppel [aut] ,
Swen Jullien [aut] ,
Christophe Menkes [aut] ,
Alix Biton [aut],
Thomas Arsouze [aut, cre]
Maintainer: Thomas Arsouze <thomas.arsouze@cirad.fr>
Diff between StormR versions 0.2.1 dated 2024-07-24 and 0.3.0 dated 2026-07-15
DESCRIPTION | 24 MD5 | 102 +- NAMESPACE | 8 NEWS.md | 10 R/computeBehaviour.R |only R/computeTEW.R |only R/defStormsDataset.R | 194 ++--- R/defStormsList.R | 333 ++++++--- R/plotBehaviour.R | 100 +- R/plotTEW.R |only R/plotTemporal.R | 4 R/spatialBehaviour.R | 1019 +++++----------------------- R/sysdata.rda |binary R/temporalBehaviour.R | 143 --- README.md | 56 + build/vignette.rds |binary inst/doc/Behaviour.Rmd | 2 inst/doc/Behaviour.html | 19 inst/doc/ComputeTEW.R |only inst/doc/ComputeTEW.Rmd |only inst/doc/ComputeTEW.html |only inst/doc/ExtractStorms.R | 5 inst/doc/ExtractStorms.Rmd | 20 inst/doc/ExtractStorms.html | 118 +-- inst/doc/Models.Rmd | 4 inst/doc/Models.html | 40 - inst/doc/SpatialBehaviour.Rmd | 1 inst/doc/SpatialBehaviour.html | 69 - inst/doc/TemporalBehaviour.Rmd | 2 inst/doc/TemporalBehaviour.html | 53 - inst/extdata/test_datadtm.tif |only man/computeTEW.Rd |only man/computeTEW.SpatRaster.Rd |only man/computeTEW.list.Rd |only man/defStormsList.Rd | 5 man/figures/stormR_workflow_TEWincluded.png |only man/getTerrain.Rd |only man/plotBehaviour.Rd | 1 man/plotTEW.Rd |only man/plotTemporalTEW.Rd |only man/removeStorms.Rd |only man/renameStorms.Rd |only man/spatialBehaviour.Rd | 3 man/subsetStorms.Rd |only man/temporalBehaviour.Rd | 3 tests/testthat.R | 2 tests/testthat/helper-data.R |only tests/testthat/test-compute.R |only tests/testthat/test-computeTEW.R |only tests/testthat/test-plotBehaviour.R | 297 +++----- tests/testthat/test-plotStorms.R | 144 ++- tests/testthat/test-plotTEW.R |only tests/testthat/test-spatialBehaviour.R | 432 ----------- tests/testthat/test-stormsDataset.R | 146 ++-- tests/testthat/test-stormsList.R | 228 +++--- tests/testthat/test-temporalBehaviour.R | 77 -- vignettes/Behaviour.Rmd | 2 vignettes/ComputeTEW.Rmd |only vignettes/ExtractStorms.Rmd | 20 vignettes/Models.Rmd | 4 vignettes/SpatialBehaviour.Rmd | 1 vignettes/TemporalBehaviour.Rmd | 2 vignettes/stormr.bib | 36 63 files changed, 1488 insertions(+), 2241 deletions(-)
Title: Simple Neural Application
Description: A simple wrapper to easily design vanilla deep neural networks using a 'torch' backend for regression, classification and multi-label tasks, with some tweaks and tricks (skip shortcuts, embedding, feature selection and anomaly detection).
Author: Giancarlo Vercellino [aut, cre, cph]
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
This is a re-admission after prior archival of version 1.1.0 dated 2021-06-30
Diff between snap versions 1.1.0 dated 2021-06-30 and 2.0.0 dated 2026-07-15
DESCRIPTION | 20 MD5 | 17 NAMESPACE | 18 NEWS.md | 20 R/main.R | 1066 ++++++++++++++++++++++++++++++++-------------------- R/snap.R | 6 R/support.R | 193 ++++++++- man/snap-package.Rd |only man/snap.Rd | 58 +- tests |only 10 files changed, 894 insertions(+), 504 deletions(-)
Title: Make PX-Files in R
Description: Create PX-files from scratch or read and modify existing ones.
Includes a function for every PX keyword, making metadata manipulation
simple and human-readable.
Author: Johan Ejstrud [cre, aut],
Lars Pedersen [aut],
Statistics Greenland [cph]
Maintainer: Johan Ejstrud <johan@ejstrud.com>
Diff between pxmake versions 0.20.1 dated 2026-04-18 and 0.21.0 dated 2026-07-15
pxmake-0.20.1/pxmake/man/sort_data_table_by_order.Rd |only pxmake-0.21.0/pxmake/DESCRIPTION | 8 pxmake-0.21.0/pxmake/MD5 | 69 ++--- pxmake-0.21.0/pxmake/NEWS.md | 19 + pxmake-0.21.0/pxmake/R/helper_functions.R | 9 pxmake-0.21.0/pxmake/R/modify_data.R | 74 +++-- pxmake-0.21.0/pxmake/R/modify_helpers.R | 1 pxmake-0.21.0/pxmake/R/note_warning_error.R | 24 - pxmake-0.21.0/pxmake/R/px.R | 9 pxmake-0.21.0/pxmake/R/px_file.R | 45 ++- pxmake-0.21.0/pxmake/R/r_script.R | 3 pxmake-0.21.0/pxmake/README.md | 2 pxmake-0.21.0/pxmake/build/vignette.rds |binary pxmake-0.21.0/pxmake/inst/doc/first-px-file.html | 2 pxmake-0.21.0/pxmake/inst/doc/micro-files.html | 6 pxmake-0.21.0/pxmake/man/download_px_or_parquet_and_return_path.Rd | 2 pxmake-0.21.0/pxmake/man/format_px_object_as_lines.Rd | 4 pxmake-0.21.0/pxmake/man/get_data_table.Rd | 5 pxmake-0.21.0/pxmake/man/px.Rd | 1 pxmake-0.21.0/pxmake/man/px_data.px.Rd | 7 pxmake-0.21.0/pxmake/man/px_from_px_file.Rd | 6 pxmake-0.21.0/pxmake/man/px_save.Rd | 1 pxmake-0.21.0/pxmake/man/pxmake-package.Rd | 1 pxmake-0.21.0/pxmake/man/save_px_as_px_file.Rd | 6 pxmake-0.21.0/pxmake/man/set_data_factors_based_on_ordering_and_sort.Rd |only pxmake-0.21.0/pxmake/man/validate_px_arguments.Rd | 1 pxmake-0.21.0/pxmake/man/validate_px_data_arguments.Rd | 5 pxmake-0.21.0/pxmake/man/validate_px_save_arguments.Rd | 1 pxmake-0.21.0/pxmake/tests/testthat/fixtures/px/no_timeval_or_codes2.pxk |only pxmake-0.21.0/pxmake/tests/testthat/helper.R | 4 pxmake-0.21.0/pxmake/tests/testthat/test-00-helper_functions.R | 4 pxmake-0.21.0/pxmake/tests/testthat/test-30-add_totals.R | 4 pxmake-0.21.0/pxmake/tests/testthat/test-49-px.R | 24 + pxmake-0.21.0/pxmake/tests/testthat/test-51-pxsave.R | 16 + pxmake-0.21.0/pxmake/tests/testthat/test-52-px-ordering.R | 40 +++ pxmake-0.21.0/pxmake/tests/testthat/test-55-modify-data.R | 126 +++------- pxmake-0.21.0/pxmake/tests/testthat/test-91-pxjob-micromake.R | 6 37 files changed, 320 insertions(+), 215 deletions(-)
Title: Fundamental Clustering Problems Suite
Description: Over sixty clustering algorithms are provided in this package with consistent input and output, which enables the user to try out algorithms swiftly. Additionally, 26 statistical approaches for the estimation of the number of clusters as well as the mirrored density plot (MD-plot) of clusterability are implemented. The packages is published in Thrun, M.C., Stier Q.: "Fundamental Clustering Algorithms Suite" (2021), SoftwareX, <DOI:10.1016/j.softx.2020.100642>. Moreover, the fundamental clustering problems suite (FCPS) offers a variety of clustering challenges any algorithm should handle when facing real world data, see Thrun, M.C., Ultsch A.: "Clustering Benchmark Datasets Exploiting the Fundamental Clustering Problems" (2020), Data in Brief, <DOI:10.1016/j.dib.2020.105501>.
Author: Michael Thrun [aut, cre, cph] ,
Peter Nahrgang [ctr, ctb],
Felix Pape [ctr, ctb],
Vasyl Pihur [ctb],
Guy Brock [ctb],
Susmita Datta [ctb],
Somnath Datta [ctb],
Luis Winckelmann [com],
Alfred Ultsch [dtc, ctb],
Quirin Stier [ctb, rev]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between FCPS versions 1.3.6 dated 2026-03-26 and 1.4.0 dated 2026-07-15
FCPS-1.3.6/FCPS/R/PenalizedRegressionBasedClustering.R |only FCPS-1.3.6/FCPS/man/PenalizedRegressionBasedClustering.Rd |only FCPS-1.4.0/FCPS/DESCRIPTION | 13 - FCPS-1.4.0/FCPS/MD5 | 33 ++- FCPS-1.4.0/FCPS/NAMESPACE | 11 - FCPS-1.4.0/FCPS/R/CA_data_fun.R |only FCPS-1.4.0/FCPS/R/CA_dist_fun.R |only FCPS-1.4.0/FCPS/R/ConsensusClustering.R |only FCPS-1.4.0/FCPS/R/PFclustering.R |only FCPS-1.4.0/FCPS/R/cluster_analysis_fun.R |only FCPS-1.4.0/FCPS/R/parApplyClusterAnalysis.R |only FCPS-1.4.0/FCPS/R/parApplyDataBasedCA.R |only FCPS-1.4.0/FCPS/R/parApplyDistanceBasedCA.R |only FCPS-1.4.0/FCPS/R/parallel_CA_internal.R |only FCPS-1.4.0/FCPS/build/partial.rdb |binary FCPS-1.4.0/FCPS/inst/doc/FCPS.html | 20 - FCPS-1.4.0/FCPS/man/APclustering.Rd | 151 ++++++-------- FCPS-1.4.0/FCPS/man/ConsensusClustering.Rd |only FCPS-1.4.0/FCPS/man/GenieClustering.Rd | 106 +++++---- FCPS-1.4.0/FCPS/man/PFclustering.Rd |only FCPS-1.4.0/FCPS/man/RobustTrimmedClustering.Rd | 92 ++++---- FCPS-1.4.0/FCPS/man/Spectrum.Rd | 149 ++++++------- FCPS-1.4.0/FCPS/man/cluster_analysis_fun.Rd |only FCPS-1.4.0/FCPS/man/parApplyClusterAnalysis.Rd |only FCPS-1.4.0/FCPS/man/parApplyDataBasedCA.Rd |only FCPS-1.4.0/FCPS/man/parApplyDistanceBasedCA.Rd |only 26 files changed, 297 insertions(+), 278 deletions(-)
Title: Intuitive Color and Palette Generation and Modification
Description: A one-stop shop for intuitive and dependency-free color and palette
creation and modification. Includes palettes and functionality from popular
packages such as 'viridis', 'RColorBrewer', and base R 'grDevices', as well
as 'ggplot2' plot bindings. Users can generate perceptually uniform and
colorblind-friendly palettes, adjust palettes in HSL and RGB color spaces,
map color gradients to value ranges, and create color-generating functions.
Author: Maurits Unkel [aut, cre]
Maintainer: Maurits Unkel <mauritsunkel@gmail.com>
Diff between colorify versions 0.1.2 dated 2025-11-06 and 1.0.0 dated 2026-07-15
DESCRIPTION | 10 - LICENSE |only MD5 | 49 ++++--- NEWS.md | 4 R/colorify.R | 161 ++++++++++++------------- R/colorify_map.R | 21 +-- R/colorify_pal.R | 34 ++--- R/colortistry.R | 44 +++---- R/display_palettes.R | 33 ++--- R/ggplot2_scales.R | 50 +++---- R/hex2rgba.R | 8 - R/hsv2rgb.R | 36 +++-- R/utils.R | 8 - README.md | 14 +- build/vignette.rds |binary inst/doc/colorify.R | 95 +++++++-------- inst/doc/colorify.Rmd | 157 ++++++++++++------------ inst/doc/colorify.html | 133 ++++++++++----------- man/colorify.Rd | 32 ++--- man/colortistry.Rd | 30 ++-- man/hsv2rgb.Rd | 6 man/scale_colorify.Rd | 2 tests/testthat/test-colorify-pal.R |only tests/testthat/test-colorify.R | 220 ++++++++++++++++++++--------------- tests/testthat/test-ggplot2-scales.R |only tests/testthat/test-utilities.R |only tests/testthat/test-visual.R |only vignettes/colorify.Rmd | 157 ++++++++++++------------ 28 files changed, 679 insertions(+), 625 deletions(-)
Title: Approximate Bayesian Regularization for Parsimonious Estimates
Description: Approximate Bayesian regularization using Gaussian approximations. The input is a vector of estimates
and a Gaussian error covariance matrix of the key parameters. Bayesian shrinkage is then applied
to obtain parsimonious solutions. The method is described on
Karimova, van Erp, Leenders, and Mulder (2025) <DOI:10.1016/j.jmp.2025.102925>. Gibbs samplers are used
for model fitting. The shrinkage priors that are supported are Gaussian (ridge) priors, Laplace
(lasso) priors (Park and Casella, 2008 <DOI:10.1198/016214508000000337>), and horseshoe priors
(Carvalho, et al., 2010; <DOI:10.1093/biomet/asq017>). These priors include an option
for grouped regularization of different subsets of parameters (Meier et al., 2008;
<DOI:10.1111/j.1467-9868.2007.00627.x>). F priors are used for the penalty
parameters lambda^2 (Mulder and Pericchi, 2018 <DOI:10.1214/17-BA1092>). This correspond to
half-Cauchy priors on lambda (Carvalho, Polson, Scott, 2010 <DOI:10.1093/bio [...truncated...]
Author: Joris Mulder [aut, cre],
Diana Karimova [aut, ctb],
Sara van Erp [ctb],
Roger Leenders [ctb]
Maintainer: Joris Mulder <j.mulder3@tilburguniversity.edu>
Diff between shrinkem versions 0.3.0 dated 2026-06-10 and 0.4.0 dated 2026-07-15
DESCRIPTION | 8 +++--- MD5 | 12 ++++----- R/RcppExports.R | 12 ++++----- R/shrinkem_main_functions.R | 58 ++++++++++++++++++++++++++++++++++++++++---- man/shrinkem.Rd | 20 +++++++++++++++ src/RcppExports.cpp | 27 +++++++++++--------- src/shrinkem_samplers.cpp | 40 ++++++++++++++++++++---------- 7 files changed, 131 insertions(+), 46 deletions(-)
Title: Multilevel Descriptive Statistics and Data Preparation
Description: Provides tools for multilevel descriptive statistics and data preparation.
Computes within-group and between-group correlations (via variance decomposition or
two-level structural equation modeling), intraclass correlation coefficients (ICCs),
and descriptive statistics for nested data (e.g., repeated measurements per person),
supporting both frequentist (via 'lme4' or 'lavaan') and Bayesian (via 'brms')
estimation. Results are formatted according to APA standards and can be exported as
tables using 'gt' or 'tinytable'. Also includes functions for decomposing variables
into within-group and between-group components for use in Random Effects
Within-Between (REWB) models.
Author: Felix Dietrich [aut, cre, cph]
Maintainer: Felix Dietrich <mail@felix-dietrich.de>
Diff between mlstats versions 0.1.0 dated 2026-07-11 and 0.1.1 dated 2026-07-15
DESCRIPTION | 6 MD5 | 60 +- NEWS.md | 65 +++ R/decompose_within_between.R | 60 ++ R/media_diary.R | 2 R/mldesc.R | 48 ++ R/mlstats_desc_tibble.R | 2 R/utils.R | 32 + R/within_between_correlations.R | 3 README.md | 16 inst/doc/correlation-methods.Rmd | 22 - inst/doc/correlation-methods.html | 54 ++ inst/doc/mlstats.Rmd | 8 inst/doc/mlstats.html | 204 +++++----- inst/doc/multilevel-descriptives.Rmd | 2 inst/doc/multilevel-descriptives.html | 49 +- inst/doc/rewb-models.R | 2 inst/doc/rewb-models.Rmd | 23 - inst/doc/rewb-models.html | 87 ++-- inst/doc/tables.html | 448 +++++++++++----------- man/decompose_within_between.Rd | 25 - man/media_diary.Rd | 2 man/mldesc.Rd | 13 man/within_between_correlations.Rd | 2 tests/testthat/test-decompose_within_between.R | 108 ++++- tests/testthat/test-mldesc.R | 137 +++++- tests/testthat/test-within_between_correlations.R | 51 ++ vignettes/correlation-methods.Rmd | 22 - vignettes/mlstats.Rmd | 8 vignettes/multilevel-descriptives.Rmd | 2 vignettes/rewb-models.Rmd | 23 - 31 files changed, 1043 insertions(+), 543 deletions(-)
Title: Basic Functions in Knowledge Space Theory Using Matrix
Representation
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstMatrix' package
provides basic functionalities to generate, handle, and manipulate
knowledge structures and knowledge spaces. Opposed to the 'kst'
package, 'kstMatrix' uses matrix representations for knowledge
structures. Furthermore, 'kstMatrix' contains several knowledge spaces
developed by the research group around Cornelia Dowling through
querying experts.
Author: Cord Hockemeyer [aut, cre],
Peter Steiner [aut],
Wai Wong [aut]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstMatrix versions 2.3-3 dated 2026-06-17 and 2.3-4 dated 2026-07-15
Changelog | 3 DESCRIPTION | 8 MD5 | 18 - R/kmminimalfamset.R | 15 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/kstMatrix.Rmd | 507 +++++++++++++++++++++++------------------------- inst/doc/kstMatrix.html | 23 +- man/kmminimalfamset.Rd | 8 vignettes/kstMatrix.Rmd | 507 +++++++++++++++++++++++------------------------- 10 files changed, 555 insertions(+), 534 deletions(-)
Title: Computes Statistics for Relational Event History Data
Description: Computes a variety of statistics for relational event models (Meijerink et al., 2022, <doi:10.3758/s13428-022-01821-8>). Relational event models enable researchers to investigate exogenous and endogenous factors, and interactions, influencing the evolution of a time-ordered sequence of events. These models are categorized into tie-oriented models (Butts, C., 2008, <doi:10.1111/j.1467-9531.2008.00203.x>), where the probability of a dyad interacting next is modeled in a single step, and actor-oriented models (Stadtfeld, C., & Block, P., 2017, <doi:10.15195/v4.a14>), which first model the probability of a sender initiating an interaction and subsequently the probability of the sender's choice of receiver. The package is designed to compute a variety of statistics that summarize exogenous and endogenous influences on the event stream for both types of models.
Author: Giuseppe Arena [aut] ,
Marlyne Meijerink-Bosman [aut],
Joris Mulder [aut, cre],
Diana Karimova [ctb],
Rumana Lakdawala [ctb],
Mahdi Shafiee Kamalabad [ctb],
Fabio Generoso Vieira [ctb],
Roger Leenders [ctb]
Maintainer: Joris Mulder <j.mulder3@tilburguniversity.edu>
Diff between remstats versions 4.0.0 dated 2026-05-09 and 4.1.0 dated 2026-07-15
remstats-4.0.0/remstats/R/bind_remstats.R |only remstats-4.1.0/remstats/DESCRIPTION | 17 remstats-4.1.0/remstats/MD5 | 129 - remstats-4.1.0/remstats/NAMESPACE | 26 remstats-4.1.0/remstats/R/RcppExports.R | 4 remstats-4.1.0/remstats/R/actor_effects.R | 6 remstats-4.1.0/remstats/R/aomstats.R | 52 remstats-4.1.0/remstats/R/duremstats.R |only remstats-4.1.0/remstats/R/effects.R | 26 remstats-4.1.0/remstats/R/helpers.R | 38 remstats-4.1.0/remstats/R/remstats-package.R | 2 remstats-4.1.0/remstats/R/remstats.R | 260 ++- remstats-4.1.0/remstats/R/remstats_durem.R |only remstats-4.1.0/remstats/R/stack_stats.R | 758 ++++++++-- remstats-4.1.0/remstats/R/tie_effects.R | 6 remstats-4.1.0/remstats/R/tomstats.R | 102 - remstats-4.1.0/remstats/R/util_remstats.R |only remstats-4.1.0/remstats/inst/doc/remstats.html | 3 remstats-4.1.0/remstats/inst/tinytest/test-active-effects.R |only remstats-4.1.0/remstats/inst/tinytest/test-aomstats-memory-types.R | 4 remstats-4.1.0/remstats/inst/tinytest/test-bind-remstats.R | 6 remstats-4.1.0/remstats/inst/tinytest/test-compare-sampled-typed-ext-FALSE.R | 38 remstats-4.1.0/remstats/inst/tinytest/test-compare-sampled-typed-ext-TRUE.R | 32 remstats-4.1.0/remstats/inst/tinytest/test-endogenous-stats2.R | 31 remstats-4.1.0/remstats/inst/tinytest/test-endogenous-stats3.R | 22 remstats-4.1.0/remstats/inst/tinytest/test-endogenous-stats4.R | 12 remstats-4.1.0/remstats/inst/tinytest/test-endogenous-stats5.R | 4 remstats-4.1.0/remstats/inst/tinytest/test-exogenous-stats1.R | 12 remstats-4.1.0/remstats/inst/tinytest/test-exogenous-stats2.R | 6 remstats-4.1.0/remstats/inst/tinytest/test-exogenous-stats3.R | 6 remstats-4.1.0/remstats/inst/tinytest/test-exogenous-stats4.R | 6 remstats-4.1.0/remstats/inst/tinytest/test-exogenous-stats5.R | 6 remstats-4.1.0/remstats/inst/tinytest/test-interact.R | 4 remstats-4.1.0/remstats/inst/tinytest/test-memory.R | 10 remstats-4.1.0/remstats/inst/tinytest/test-messages.R | 28 remstats-4.1.0/remstats/inst/tinytest/test-remstats-durem.R |only remstats-4.1.0/remstats/inst/tinytest/test-remstats-typed-events.R | 46 remstats-4.1.0/remstats/inst/tinytest/test-slice.R | 8 remstats-4.1.0/remstats/inst/tinytest/test-stack-durem.R |only remstats-4.1.0/remstats/inst/tinytest/test-stack-stats.R | 59 remstats-4.1.0/remstats/inst/tinytest/test-weights.R | 2 remstats-4.1.0/remstats/inst/tinytest/test_compare_sampled_stats.R | 14 remstats-4.1.0/remstats/inst/tinytest/test_compare_sampled_stats1.R | 14 remstats-4.1.0/remstats/inst/tinytest/test_compare_sampled_stats2.R | 14 remstats-4.1.0/remstats/inst/tinytest/test_compare_sampled_stats3.R | 16 remstats-4.1.0/remstats/inst/tinytest/test_compare_sampled_stats4.R | 14 remstats-4.1.0/remstats/inst/tinytest/test_compare_sampled_stats5.R | 14 remstats-4.1.0/remstats/inst/tinytest/test_compare_sampled_stats6.R | 16 remstats-4.1.0/remstats/inst/tinytest/test_compare_sampled_stats7.R | 14 remstats-4.1.0/remstats/inst/tinytest/test_compare_sampled_stats8.R | 14 remstats-4.1.0/remstats/inst/tinytest/test_stack_thin.R |only remstats-4.1.0/remstats/inst/tinytest/test_tie_pshifts_typed_events.R | 12 remstats-4.1.0/remstats/man/active_effects.Rd |only remstats-4.1.0/remstats/man/actor_effects.Rd | 7 remstats-4.1.0/remstats/man/aomstats.Rd | 75 remstats-4.1.0/remstats/man/bind_remstats.Rd | 2 remstats-4.1.0/remstats/man/dot-build_riskset_matrix.Rd |only remstats-4.1.0/remstats/man/dot-compute_active_stats.Rd |only remstats-4.1.0/remstats/man/dot-maybe_prepend_baseline.Rd |only remstats-4.1.0/remstats/man/dot-parse_active_effects.Rd |only remstats-4.1.0/remstats/man/dot-prepare_dual_edgelist.Rd |only remstats-4.1.0/remstats/man/dot-remstats_durem.Rd |only remstats-4.1.0/remstats/man/dot-remstats_durem_dispatch.Rd |only remstats-4.1.0/remstats/man/dot-validate_consider_type_durem.Rd |only remstats-4.1.0/remstats/man/duremstats.Rd |only remstats-4.1.0/remstats/man/event.Rd | 17 remstats-4.1.0/remstats/man/is.remstats_durem.Rd |only remstats-4.1.0/remstats/man/print.remstats_durem.Rd |only remstats-4.1.0/remstats/man/remstats.Rd | 166 +- remstats-4.1.0/remstats/man/select_stats.Rd |only remstats-4.1.0/remstats/man/stack_stats.Rd | 30 remstats-4.1.0/remstats/man/summary.remstats_durem.Rd |only remstats-4.1.0/remstats/man/tie_effects.Rd | 5 remstats-4.1.0/remstats/man/tomstats.Rd | 110 - remstats-4.1.0/remstats/src/RcppExports.cpp | 18 remstats-4.1.0/remstats/src/aomstats.cpp | 31 remstats-4.1.0/remstats/src/duremstats.cpp |only 77 files changed, 1523 insertions(+), 851 deletions(-)
Title: Conjoint Analysis with Reliability Correction and Visualization
Description: Provides tools for analyzing data generated from conjoint survey experiments, a method widely used in the social sciences for studying multidimensional preferences. The package implements estimation of marginal means (MMs) and average marginal component effects (AMCEs), with corrections for measurement error. Methods include profile-level and choice-level estimators, bias correction using intra-respondent reliability (IRR), and visualization utilities. For details on the methodology, see Clayton, Horiuchi, Kaufman, King, and Komisarchik (2025) <https://gking.harvard.edu/conjointE>.
Author: Yusaku Horiuchi [aut, cre] ,
Aaron Kaufman [aut] ,
Gary King [aut]
Maintainer: Yusaku Horiuchi <yusaku.horiuchi@gmail.com>
Diff between projoint versions 1.1.1 dated 2026-02-22 and 1.1.2 dated 2026-07-15
DESCRIPTION | 14 +++++++------- MD5 | 19 ++++++++++--------- NEWS.md | 8 ++++++++ README.md | 9 ++++++++- build/vignette.rds |binary inst/CITATION | 39 +++++++++++++++++++++++---------------- inst/doc/analyze.html | 6 +++--- inst/doc/explore.html | 6 +++--- inst/doc/faq.html | 14 +++++++------- inst/doc/read.html | 4 ++-- tests/testthat/test-citation.R |only 11 files changed, 71 insertions(+), 48 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: Jose Pinheiro [aut] ,
Douglas Bates [aut] ,
Saikat DebRoy [ctb] ,
Deepayan Sarkar [ctb] ,
EISPACK authors [ctb] ,
Siem Heisterkamp [ctb] ,
Bert Van Willigen [ctb] ,
Johannes Ranke [ctb] ),
R Core Team [aut, cre]
Maintainer: R Core Team <R-core@R-project.org>
Diff between nlme versions 3.1-169 dated 2026-03-27 and 3.1-170 dated 2026-07-15
ChangeLog | 9 +++ DESCRIPTION | 10 ++-- MD5 | 94 ++++++++++++++++++++--------------------- build/partial.rdb |binary data/Alfalfa.rda |binary data/Assay.rda |binary data/BodyWeight.rda |binary data/Cefamandole.rda |binary data/Dialyzer.rda |binary data/Earthquake.rda |binary data/Fatigue.rda |binary data/Gasoline.rda |binary data/Glucose.rda |binary data/Glucose2.rda |binary data/Gun.rda |binary data/IGF.rda |binary data/Machines.rda |binary data/MathAchSchool.rda |binary data/MathAchieve.rda |binary data/Meat.rda |binary data/Milk.rda |binary data/Muscle.rda |binary data/Nitrendipene.rda |binary data/Oats.rda |binary data/Orthodont.rda |binary data/Ovary.rda |binary data/Oxboys.rda |binary data/Oxide.rda |binary data/PBG.rda |binary data/Phenobarb.rda |binary data/Pixel.rda |binary data/Quinidine.rda |binary data/Rail.rda |binary data/RatPupWeight.rda |binary data/Relaxin.rda |binary data/Remifentanil.rda |binary data/Soybean.rda |binary data/Spruce.rda |binary data/Tetracycline1.rda |binary data/Tetracycline2.rda |binary data/Wafer.rda |binary data/Wheat.rda |binary data/Wheat2.rda |binary data/bdf.rda |binary data/ergoStool.rda |binary inst/scripts/ch02.R | 24 +++++++++- tests/deparse.R | 4 - tests/extras/scripts.Rout.save | 25 +++++++++- 48 files changed, 107 insertions(+), 59 deletions(-)
Title: Test Suite for 'Future API' Backends
Description: Backends implementing the 'Future' API <doi:10.32614/RJ-2021-048>, as defined by the 'future' package, should use the tests provided by this package to validate that they meet the minimal requirements of the 'Future' API. The tests can be performed easily from within R or from outside of R from the command line making it straightforward to include them in package tests and in Continuous Integration (CI) pipelines.
Author: Henrik Bengtsson [aut, cre, cph] ,
R Consortium [fnd]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.tests versions 0.9.0 dated 2025-04-15 and 1.0.0 dated 2026-07-15
future.tests-0.9.0/future.tests/inst/test-db/early-signaling.R |only future.tests-0.9.0/future.tests/tests/Test-class.R |only future.tests-0.9.0/future.tests/tests/check.R |only future.tests-0.9.0/future.tests/tests/cli_fcn.R |only future.tests-0.9.0/future.tests/tests/db_state.R |only future.tests-0.9.0/future.tests/tests/evaluate_expr,ff.R |only future.tests-0.9.0/future.tests/tests/evaluate_expr.R |only future.tests-0.9.0/future.tests/tests/one-test.R |only future.tests-0.9.0/future.tests/tests/progress.R |only future.tests-0.9.0/future.tests/tests/test_db.R |only future.tests-0.9.0/future.tests/tests/test_plans.R |only future.tests-0.9.0/future.tests/tests/utils.R |only future.tests-0.9.0/future.tests/tests/zzz.onLoad.R |only future.tests-1.0.0/future.tests/DESCRIPTION | 22 +- future.tests-1.0.0/future.tests/MD5 | 104 ++++++---- future.tests-1.0.0/future.tests/NEWS.md | 40 +++ future.tests-1.0.0/future.tests/R/check.R | 7 future.tests-1.0.0/future.tests/R/make_test.R | 9 future.tests-1.0.0/future.tests/R/test_db.R | 4 future.tests-1.0.0/future.tests/R/testme.R |only future.tests-1.0.0/future.tests/R/utils.R | 3 future.tests-1.0.0/future.tests/R/zzz.R | 9 future.tests-1.0.0/future.tests/README.md |only future.tests-1.0.0/future.tests/build/vignette.rds |binary future.tests-1.0.0/future.tests/inst/doc/future.tests-01-intro.html | 6 future.tests-1.0.0/future.tests/inst/doc/future.tests-01-intro.md | 6 future.tests-1.0.0/future.tests/inst/doc/future.tests-05-ci-github_actions.html | 10 future.tests-1.0.0/future.tests/inst/doc/future.tests-05-ci-github_actions.md | 10 future.tests-1.0.0/future.tests/inst/doc/future.tests-05-ci-travis.html | 2 future.tests-1.0.0/future.tests/inst/doc/future.tests-05-ci-travis.md | 2 future.tests-1.0.0/future.tests/inst/test-db/cancel.R |only future.tests-1.0.0/future.tests/inst/test-db/plan.R | 50 ++++ future.tests-1.0.0/future.tests/inst/test-db/resolved-lazy.R | 6 future.tests-1.0.0/future.tests/inst/testme |only future.tests-1.0.0/future.tests/man/check.Rd | 4 future.tests-1.0.0/future.tests/man/load_tests.Rd | 2 future.tests-1.0.0/future.tests/man/make_test.Rd | 7 future.tests-1.0.0/future.tests/man/skip_test.Rd | 2 future.tests-1.0.0/future.tests/man/test_db.Rd | 2 future.tests-1.0.0/future.tests/tests/test-Test-class.R |only future.tests-1.0.0/future.tests/tests/test-check.R |only future.tests-1.0.0/future.tests/tests/test-cli_fcn.R |only future.tests-1.0.0/future.tests/tests/test-db_state.R |only future.tests-1.0.0/future.tests/tests/test-evaluate_expr,ff.R |only future.tests-1.0.0/future.tests/tests/test-evaluate_expr.R |only future.tests-1.0.0/future.tests/tests/test-one-test.R |only future.tests-1.0.0/future.tests/tests/test-progress.R |only future.tests-1.0.0/future.tests/tests/test-test_db.R |only future.tests-1.0.0/future.tests/tests/test-test_plans.R |only future.tests-1.0.0/future.tests/tests/test-utils.R |only future.tests-1.0.0/future.tests/tests/test-zzz.onLoad.R |only future.tests-1.0.0/future.tests/vignettes/future.tests-01-intro.md | 6 future.tests-1.0.0/future.tests/vignettes/future.tests-05-ci-github_actions.md | 10 future.tests-1.0.0/future.tests/vignettes/future.tests-05-ci-travis.md | 2 54 files changed, 223 insertions(+), 102 deletions(-)
Title: moDel Agnostic Language for Exploration and eXplanation
Description: Any unverified black box model is the path to failure. Opaqueness leads to distrust.
Distrust leads to ignoration. Ignoration leads to rejection.
DALEX package xrays any model and helps to explore and explain its behaviour.
Machine Learning (ML) models are widely used and have various applications in classification
or regression. Models created with boosting, bagging, stacking or similar techniques are often
used due to their high performance. But such black-box models usually lack direct interpretability.
DALEX package contains various methods that help to understand the link between input variables
and model output. Implemented methods help to explore the model on the level of a single instance
as well as a level of the whole dataset.
All model explainers are model agnostic and can be compared across different models.
DALEX package is the cornerstone for 'DrWhy.AI' universe of packages for visual model exploration.
Find more details in (Biecek 2018) <https://jmlr.org/papers/v19/18 [...truncated...]
Author: Przemyslaw Biecek [aut, cre] ,
Szymon Maksymiuk [aut] ,
Hubert Baniecki [aut]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between DALEX versions 2.5.3 dated 2025-10-16 and 2.5.4 dated 2026-07-15
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/misc_theme_drwhy.R | 4 ++-- R/model_performance.R | 2 +- R/model_profile.R | 2 +- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Secure and Intuitive Access to 'BigDataPE' 'API' Datasets
Description: Designed to simplify the process of retrieving datasets from the 'Big Data PE' platform using secure token-based authentication. It provides functions for securely storing, retrieving, and managing tokens associated with specific datasets, as well as fetching and processing data. The data-retrieval engine is provided by the generic 'apifetch' package, which 'BigDataPE' configures for the Big Data PE service.
Author: Andre Leite [aut, cre],
Hugo Vasconcelos [aut],
Diogo Bezerra [aut],
Marcos Wasiliew [aut],
Carlos Amorim [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between BigDataPE versions 0.1.0 dated 2026-04-07 and 0.2.0 dated 2026-07-15
DESCRIPTION | 34 +-- MD5 | 19 +- NEWS.md | 16 + R/BigDataPE.R | 301 +++++------------------------------ build/vignette.rds |binary man/bdpe_fetch_chunks.Rd | 10 - man/bdpe_fetch_data.Rd | 8 man/bdpe_store_token.Rd | 2 man/figures/hexBigDataPE-refined.svg |only man/figures/hexBigDataPE.svg | 32 ++- man/parse_queries.Rd | 3 11 files changed, 120 insertions(+), 305 deletions(-)
Title: Structural Scenario Analysis for Bayesian Structural Vector
Autoregression Models
Description: Implements the scenario analysis proposed by Antolin-Diaz,
Petrella and Rubio-Ramirez (2021)
"Structural scenario analysis with SVARs" <doi:10.1016/j.jmoneco.2020.06.001>.
Author: Giovanni Lombardo [aut, cre],
Tito Quadri [aut]
Maintainer: Giovanni Lombardo <giannilmbd@gmail.com>
Diff between APRScenario versions 0.0.3.1 dated 2025-12-21 and 0.0.4.0 dated 2026-07-15
APRScenario-0.0.3.1/APRScenario/vignettes/APRScenario_files |only APRScenario-0.0.3.1/APRScenario/vignettes/figures |only APRScenario-0.0.4.0/APRScenario/DESCRIPTION | 17 APRScenario-0.0.4.0/APRScenario/MD5 | 44 APRScenario-0.0.4.0/APRScenario/NEWS.md |only APRScenario-0.0.4.0/APRScenario/R/KL.r | 17 APRScenario-0.0.4.0/APRScenario/R/big_b_and_M.r | 58 APRScenario-0.0.4.0/APRScenario/R/forc_h.r | 70 - APRScenario-0.0.4.0/APRScenario/R/gen_mats.r | 12 APRScenario-0.0.4.0/APRScenario/R/mat_forc.r | 220 +-- APRScenario-0.0.4.0/APRScenario/R/scenarios.r | 12 APRScenario-0.0.4.0/APRScenario/README.md | 9 APRScenario-0.0.4.0/APRScenario/build/vignette.rds |binary APRScenario-0.0.4.0/APRScenario/inst/benchmarks |only APRScenario-0.0.4.0/APRScenario/inst/doc/APRScenario.html | 695 ++++------ APRScenario-0.0.4.0/APRScenario/man/KL.Rd | 5 APRScenario-0.0.4.0/APRScenario/man/big_b_and_M.Rd | 29 APRScenario-0.0.4.0/APRScenario/man/forc_h.Rd | 4 APRScenario-0.0.4.0/APRScenario/man/gen_mats.Rd | 5 APRScenario-0.0.4.0/APRScenario/man/mat_forc.Rd | 11 APRScenario-0.0.4.0/APRScenario/man/scenarios.Rd | 11 APRScenario-0.0.4.0/APRScenario/tests/testthat/test_irf_recursion.R |only 22 files changed, 672 insertions(+), 547 deletions(-)
Title: Radiation Safety
Description: Provides functions for radiation safety, also known as
"radiation protection" and "radiological control". The science of
radiation protection is called "health physics" and its engineering
functions are called "radiological engineering". Functions in this
package cover many of the computations needed by radiation safety
professionals. Examples include: obtaining updated calibration and
source check values for radiation monitors to account for radioactive
decay in a reference source, simulating instrument readings to better
understand measurement uncertainty, correcting instrument readings
for geometry and ambient atmospheric conditions. Many of these
functions are described in Johnson and Kirby (2011, ISBN-13:
978-1609134198). Utilities are also included for developing inputs
and processing outputs with radiation transport codes, such as MCNP,
a general-purpose Monte Carlo N-Particle code that can be used for
neutron, photon, electron, or coupled neutron/photon/electron transport
(Wern [...truncated...]
Author: Mark Hogue [aut, cre]
Maintainer: Mark Hogue <mark.hogue.chp@gmail.com>
Diff between radsafer versions 2.4.0 dated 2025-12-03 and 2.4.1 dated 2026-07-15
DESCRIPTION | 10 MD5 | 90 +++---- NEWS.md | 4 R/RN_plot_spectrum.R | 9 R/dk_correct.R | 2 R/scaler_sim.R | 4 README.md | 386 ++++++++----------------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Introduction_to_radsafer.R | 14 - inst/doc/Introduction_to_radsafer.Rmd | 19 + inst/doc/Introduction_to_radsafer.html | 165 +++++++------ man/RN_Spec_Act.Rd | 22 - man/RN_bin_screen_phot.Rd | 22 - man/RN_index_screen.Rd | 22 - man/RN_info.Rd | 22 - man/RN_plot_df.Rd | 22 - man/RN_plot_search_results.Rd | 22 - man/RN_plot_spectrum.Rd | 29 +- man/RN_save_spectrum.Rd | 22 - man/RN_search_alpha_by_E.Rd | 22 - man/RN_search_beta_by_E.Rd | 22 - man/RN_search_phot_by_E.Rd | 22 - man/air_dens_cf.Rd | 10 man/disk_to_disk_solid_angle.Rd | 10 man/dk_correct.Rd | 6 man/dk_pct_to_num_half_life.Rd | 6 man/dk_time.Rd | 6 man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-6-2.png |only man/figures/README-unnamed-chunk-6-3.png |only man/figures/README-unnamed-chunk-8-1.png |binary man/figures/README-unnamed-chunk-8-2.png |only man/figures/README-unnamed-chunk-8-3.png |only man/mcnp_cone_angle.Rd | 18 - man/mcnp_est_nps.Rd | 18 - man/mcnp_matrix_rotations.Rd | 18 - man/mcnp_mesh_bins.Rd | 18 - man/mcnp_plot_out_spec.Rd | 18 - man/mcnp_scan2plot.Rd | 18 - man/mcnp_scan_save.Rd | 18 - man/mcnp_sdef_erg_hist.Rd | 18 - man/mcnp_sdef_erg_line.Rd | 18 - man/neutron_geom_cf.Rd | 10 man/radsafer-package.Rd | 5 man/scaler_sim.Rd | 10 man/tau_estimate.Rd | 10 vignettes/Introduction_to_radsafer.Rmd | 19 + 48 files changed, 546 insertions(+), 660 deletions(-)
Title: Plotting Mutational Signatures and Mutational Spectra
Description: Plotting functions for mutational signatures and mutational
spectra, including single base substitutions (SBS), doublet base
substitutions (DBS), and small insertions and deletions (indels).
Generates plots similar to those used previously in
Alexandrov et al. (2020)<doi:10.1038/s41586-020-1943-3> and
Rozen et al. (2026)<doi:10.5281/zenodo.18451842>.
Author: Steven Rozen [aut, cre]
Maintainer: Steven Rozen <steverozen@pm.me>
Diff between mSigPlot versions 2.0.38 dated 2026-05-05 and 2.0.41 dated 2026-07-15
mSigPlot-2.0.38/mSigPlot/R/type_476_indel_type.R |only mSigPlot-2.0.38/mSigPlot/man/type_476_indel_type.Rd |only mSigPlot-2.0.41/mSigPlot/DESCRIPTION | 8 - mSigPlot-2.0.41/mSigPlot/MD5 | 76 +++++----- mSigPlot-2.0.41/mSigPlot/NEWS.md | 21 ++ mSigPlot-2.0.41/mSigPlot/R/catalog_and_label_order_476.R |only mSigPlot-2.0.41/mSigPlot/R/catalog_row_order.R | 21 -- mSigPlot-2.0.41/mSigPlot/R/globals.R | 1 mSigPlot-2.0.41/mSigPlot/R/id89_figlabels.R | 3 mSigPlot-2.0.41/mSigPlot/R/normalize_catalog.R | 20 +- mSigPlot-2.0.41/mSigPlot/R/plot_DBS144.R | 10 + mSigPlot-2.0.41/mSigPlot/R/plot_DBS78.R | 1 mSigPlot-2.0.41/mSigPlot/R/plot_ID166.R | 1 mSigPlot-2.0.41/mSigPlot/R/plot_ID476.R | 12 - mSigPlot-2.0.41/mSigPlot/R/plot_ID476_right.R | 12 - mSigPlot-2.0.41/mSigPlot/R/plot_ID83.R | 1 mSigPlot-2.0.41/mSigPlot/R/plot_ID89.R | 1 mSigPlot-2.0.41/mSigPlot/R/plot_SBS12.R | 1 mSigPlot-2.0.41/mSigPlot/R/plot_SBS192.R | 1 mSigPlot-2.0.41/mSigPlot/R/plot_SBS96.R | 1 mSigPlot-2.0.41/mSigPlot/R/plot_helpers.R | 36 ++++ mSigPlot-2.0.41/mSigPlot/build/vignette.rds |binary mSigPlot-2.0.41/mSigPlot/inst/doc/mSigPlot.Rmd | 2 mSigPlot-2.0.41/mSigPlot/inst/doc/mSigPlot.html | 10 - mSigPlot-2.0.41/mSigPlot/inst/extdata/type476_liu_et_al_sigs.tsv | 46 +++--- mSigPlot-2.0.41/mSigPlot/man/bar_plots.Rd | 9 - mSigPlot-2.0.41/mSigPlot/man/catalog_and_label_order_476.Rd |only mSigPlot-2.0.41/mSigPlot/man/catalog_row_order.Rd | 8 - mSigPlot-2.0.41/mSigPlot/man/check_ylim.Rd |only mSigPlot-2.0.41/mSigPlot/man/detect_y_axis_type.Rd | 3 mSigPlot-2.0.41/mSigPlot/man/figures/example_ID476.png |binary mSigPlot-2.0.41/mSigPlot/man/id89_figlabels.Rd | 2 mSigPlot-2.0.41/mSigPlot/man/prepare_indel_data.Rd | 2 mSigPlot-2.0.41/mSigPlot/tests/testthat/Rplots.pdf |binary mSigPlot-2.0.41/mSigPlot/tests/testthat/fixtures/reference_hashes/plot_ID476.hash | 2 mSigPlot-2.0.41/mSigPlot/tests/testthat/fixtures/reference_hashes/plot_ID476_right.hash | 2 mSigPlot-2.0.41/mSigPlot/tests/testthat/fixtures/reference_hashes/plot_ID89.hash | 2 mSigPlot-2.0.41/mSigPlot/tests/testthat/fixtures/reference_hashes/plot_ID89_peaks.hash | 2 mSigPlot-2.0.41/mSigPlot/tests/testthat/fixtures/type476_liu_et_al_sigs.tsv | 46 +++--- mSigPlot-2.0.41/mSigPlot/tests/testthat/test-ylim-validation.R |only mSigPlot-2.0.41/mSigPlot/tests/testthat/tests |only mSigPlot-2.0.41/mSigPlot/vignettes/mSigPlot.Rmd | 2 42 files changed, 211 insertions(+), 154 deletions(-)
Title: Analysis of Metafrontier Models for Efficiency and Productivity
Description: Implements metafrontier production function models for
estimating technical efficiencies and technology gaps for groups of
firms that face different restrictions of a common underlying
metatechnology (group-specific technologies in the sense of Battese,
Rao, and O'Donnell, 2004). Supports both stochastic frontier
analysis (SFA) and data envelopment analysis (DEA) based
metafrontiers. Includes the deterministic metafrontier of Battese,
Rao, and O'Donnell (2004) <doi:10.1023/B:PROD.0000012454.06094.29>,
the stochastic metafrontier of Huang, Huang, and Liu (2014)
<doi:10.1007/s11123-014-0402-2>, and the metafrontier Malmquist
productivity index of O'Donnell, Rao, and Battese (2008)
<doi:10.1007/s00181-007-0119-4>. The deterministic metafrontier can
be identified by either the minimum sum of absolute deviations (LP)
or the minimum sum of squared deviations (QP) criterion. Additional
features include panel SFA with time-varying inefficiency, bootstrap
confidence intervals [...truncated...]
Author: Erik Enstad [aut, cre]
Maintainer: Erik Enstad <erik.enstad@nhh.no>
Diff between metafrontier versions 0.2.2 dated 2026-04-21 and 0.3.0 dated 2026-07-15
metafrontier-0.2.2/metafrontier/tests/testthat/Rplots.pdf |only metafrontier-0.3.0/metafrontier/DESCRIPTION | 31 metafrontier-0.3.0/metafrontier/MD5 | 106 metafrontier-0.3.0/metafrontier/NAMESPACE | 9 metafrontier-0.3.0/metafrontier/NEWS.md | 394 +- metafrontier-0.3.0/metafrontier/R/bootstrap.R | 926 ++--- metafrontier-0.3.0/metafrontier/R/diagnostics.R |only metafrontier-0.3.0/metafrontier/R/efficiencies.R | 47 metafrontier-0.3.0/metafrontier/R/ggplot.R | 670 +-- metafrontier-0.3.0/metafrontier/R/hypothesis_tests.R | 139 metafrontier-0.3.0/metafrontier/R/latent_class.R | 926 ++--- metafrontier-0.3.0/metafrontier/R/malmquist.R | 1769 +++++----- metafrontier-0.3.0/metafrontier/R/metafrontier.R | 444 ++ metafrontier-0.3.0/metafrontier/R/metafrontier_dea.R | 538 ++- metafrontier-0.3.0/metafrontier/R/metafrontier_sfa.R | 198 - metafrontier-0.3.0/metafrontier/R/methods.R | 262 + metafrontier-0.3.0/metafrontier/R/model_extractors.R | 314 + metafrontier-0.3.0/metafrontier/R/sfa_estimation.R | 1190 +++--- metafrontier-0.3.0/metafrontier/R/sfa_panel.R | 787 ++-- metafrontier-0.3.0/metafrontier/R/simulate.R | 741 ++-- metafrontier-0.3.0/metafrontier/R/tgr.R | 21 metafrontier-0.3.0/metafrontier/README.md | 324 - metafrontier-0.3.0/metafrontier/inst/doc/introduction.R | 7 metafrontier-0.3.0/metafrontier/inst/doc/introduction.Rmd | 986 ++--- metafrontier-0.3.0/metafrontier/inst/doc/introduction.html | 1324 ++++--- metafrontier-0.3.0/metafrontier/inst/doc/malmquist.R | 4 metafrontier-0.3.0/metafrontier/inst/doc/malmquist.Rmd | 63 metafrontier-0.3.0/metafrontier/inst/doc/malmquist.html | 848 +++- metafrontier-0.3.0/metafrontier/inst/doc/methods.R | 15 metafrontier-0.3.0/metafrontier/inst/doc/methods.Rmd | 885 ++--- metafrontier-0.3.0/metafrontier/inst/doc/methods.html | 959 +++-- metafrontier-0.3.0/metafrontier/man/as_metafrontier_model.Rd | 89 metafrontier-0.3.0/metafrontier/man/check_convergence.Rd |only metafrontier-0.3.0/metafrontier/man/coef.metafrontier.Rd |only metafrontier-0.3.0/metafrontier/man/efficiencies.Rd | 13 metafrontier-0.3.0/metafrontier/man/latent_class_metafrontier.Rd | 192 - metafrontier-0.3.0/metafrontier/man/malmquist_meta.Rd | 372 +- metafrontier-0.3.0/metafrontier/man/metafrontier-package.Rd | 2 metafrontier-0.3.0/metafrontier/man/metafrontier.Rd | 118 metafrontier-0.3.0/metafrontier/man/poolability_test.Rd | 64 metafrontier-0.3.0/metafrontier/man/print.metafrontier.Rd | 6 metafrontier-0.3.0/metafrontier/man/select_n_classes.Rd | 87 metafrontier-0.3.0/metafrontier/man/simulate_metafrontier.Rd | 72 metafrontier-0.3.0/metafrontier/man/simulate_panel_metafrontier.Rd | 136 metafrontier-0.3.0/metafrontier/man/summary.metafrontier.Rd | 38 metafrontier-0.3.0/metafrontier/man/technology_gap_ratio.Rd | 6 metafrontier-0.3.0/metafrontier/man/tgr_summary.Rd | 17 metafrontier-0.3.0/metafrontier/man/vcov.metafrontier.Rd | 111 metafrontier-0.3.0/metafrontier/tests/testthat/test-bc88.R |only metafrontier-0.3.0/metafrontier/tests/testthat/test-dea-features.R |only metafrontier-0.3.0/metafrontier/tests/testthat/test-diagnostics.R |only metafrontier-0.3.0/metafrontier/tests/testthat/test-frontier-equivalence.R |only metafrontier-0.3.0/metafrontier/tests/testthat/test-malmquist-id.R |only metafrontier-0.3.0/metafrontier/tests/testthat/test-objective.R |only metafrontier-0.3.0/metafrontier/tests/testthat/test-panel-fixes.R |only metafrontier-0.3.0/metafrontier/tests/testthat/test-plots-interop.R |only metafrontier-0.3.0/metafrontier/tests/testthat/test-poolability-dea.R |only metafrontier-0.3.0/metafrontier/tests/testthat/test-simulate-dgp.R |only metafrontier-0.3.0/metafrontier/vignettes/introduction.Rmd | 986 ++--- metafrontier-0.3.0/metafrontier/vignettes/malmquist.Rmd | 63 metafrontier-0.3.0/metafrontier/vignettes/methods.Rmd | 885 ++--- 61 files changed, 11004 insertions(+), 7180 deletions(-)
Title: Lining Up Two Sets of Measurements
Description: Tools for detecting and correcting sample mix-ups between two sets
of measurements, such as between gene expression data on two tissues.
Broman et al. (2015) <doi:10.1534/g3.115.019778>.
Author: Karl W Broman [aut, cre]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between lineup versions 0.44 dated 2024-07-15 and 0.46 dated 2026-07-15
DESCRIPTION | 13 - MD5 | 36 +-- NEWS.md | 11 R/calc.locallod.R | 2 R/lineup-package.R |only README.md | 54 ++++ build/partial.rdb |only build/vignette.rds |binary data/expr1.rda |binary data/expr2.rda |binary data/f2cross.rda |binary data/genepos.rda |binary data/pmap.rda |binary inst/doc/lineup.R | 14 - inst/doc/lineup.Rmd | 11 inst/doc/lineup.html | 483 ++++++++++++++++++++++++++++-------------- man/figures |only man/find.gene.pseudomarker.Rd | 2 man/lineup-package.Rd |only man/summary.lineupdist.Rd | 2 vignettes/lineup.Rmd | 11 21 files changed, 440 insertions(+), 199 deletions(-)
Title: Wearable Accelerometer Data File Readers
Description: Reads data collected from wearable acceleratometers as used in sleep and physical activity research. Currently supports file formats: binary data from 'GENEActiv' <https://activinsights.com/>, .bin-format from GENEA devices (not for sale), and .cwa-format from 'Axivity' <https://axivity.com>. Further, it has functions for reading text files with epoch level aggregates from 'Actical', 'Fitbit', 'Actiwatch', 'ActiGraph', and 'PhilipsHealthBand'. Primarily designed to complement R package GGIR <https://CRAN.R-project.org/package=GGIR>.
Author: Vincent T van Hees [aut, cre],
Patrick Bos [aut] ,
Lena Kushleyeva [ctb],
Jing Hua Zhao [ctb],
Evgeny Mirkes [ctb],
Dan Jackson [ctb],
Jairo H Migueles [ctb],
Medical Research Council UK [cph, fnd],
Accelting [cph, fnd]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIRread versions 1.0.8 dated 2026-03-11 and 1.0.9 dated 2026-07-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/readActiwatchCount.R | 6 +++--- man/GGIRread-package.Rd | 4 ++-- man/readParmayMatrix.Rd | 5 ++--- tests/testthat/test_readActiwatchCount.R | 8 +++----- 7 files changed, 24 insertions(+), 23 deletions(-)
Title: The Free Group
Description: The free group in R; juxtaposition is represented by a
plus. Includes inversion, multiplication by a scalar,
group-theoretic power operation, and Tietze forms. To cite the
package in publications please use Hankin (2022)
<doi:10.48550/ARXIV.2212.05883>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between freegroup versions 1.2-0 dated 2025-03-20 and 1.2-1 dated 2026-07-15
freegroup-1.2-0/freegroup/inst/Makefile |only freegroup-1.2-1/freegroup/DESCRIPTION | 15 +- freegroup-1.2-1/freegroup/MD5 | 44 ++++---- freegroup-1.2-1/freegroup/NAMESPACE | 115 +++++++++++++++------- freegroup-1.2-1/freegroup/NEWS.md | 6 + freegroup-1.2-1/freegroup/R/freegroup.R | 73 +++++++++++++ freegroup-1.2-1/freegroup/R/freeops.R | 11 ++ freegroup-1.2-1/freegroup/R/outer.R | 64 ++++++------ freegroup-1.2-1/freegroup/build/partial.rdb |binary freegroup-1.2-1/freegroup/build/vignette.rds |binary freegroup-1.2-1/freegroup/data/dot.rda |binary freegroup-1.2-1/freegroup/inst/doc/freegroup.R | 48 ++++----- freegroup-1.2-1/freegroup/inst/doc/freegroup.Rnw | 37 ++++--- freegroup-1.2-1/freegroup/inst/doc/freegroup.pdf |binary freegroup-1.2-1/freegroup/inst/dot.Rmd |only freegroup-1.2-1/freegroup/man/Extract.Rd | 8 + freegroup-1.2-1/freegroup/man/c.Rd | 8 - freegroup-1.2-1/freegroup/man/cycred.Rd | 4 freegroup-1.2-1/freegroup/man/dot.Rd | 30 +++-- freegroup-1.2-1/freegroup/man/outer.Rd | 24 ++-- freegroup-1.2-1/freegroup/man/size.Rd | 13 +- freegroup-1.2-1/freegroup/man/sum.Rd | 5 freegroup-1.2-1/freegroup/vignettes/freegroup.Rnw | 37 ++++--- freegroup-1.2-1/freegroup/vignettes/freegroup.bib | 17 +-- 24 files changed, 360 insertions(+), 199 deletions(-)
Title: Model-Based Boosting
Description: Functional gradient descent algorithm
(boosting) for optimizing general risk functions utilizing
component-wise (penalised) least squares estimates or regression
trees as base-learners for fitting generalized linear, additive
and interaction models to potentially high-dimensional data.
Models and algorithms are described in <doi:10.1214/07-STS242>,
a hands-on tutorial is available from <doi:10.1007/s00180-012-0382-5>.
The package allows user-specified loss functions and base-learners.
Author: Torsten Hothorn [cre, aut] ,
Peter Buehlmann [aut] ,
Thomas Kneib [aut] ,
Matthias Schmid [aut] ,
Benjamin Hofner [aut] ,
Fabian Otto-Sobotka [ctb] ,
Fabian Scheipl [ctb] ,
Andreas Mayr [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mboost versions 2.9-11 dated 2024-08-22 and 2.9-12 dated 2026-07-15
mboost-2.9-11/mboost/vignettes/boost.bib |only mboost-2.9-11/mboost/vignettes/mboost_tutorial.bib |only mboost-2.9-12/mboost/DESCRIPTION | 30 +- mboost-2.9-12/mboost/MD5 | 104 ++++--- mboost-2.9-12/mboost/build/partial.rdb |binary mboost-2.9-12/mboost/build/vignette.rds |binary mboost-2.9-12/mboost/cleanup | 21 + mboost-2.9-12/mboost/demo |only mboost-2.9-12/mboost/inst/NEWS.Rd | 15 + mboost-2.9-12/mboost/inst/REFERENCES.bib |only mboost-2.9-12/mboost/inst/doc/SurvivalEnsembles.R | 12 mboost-2.9-12/mboost/inst/doc/SurvivalEnsembles.Rnw | 16 - mboost-2.9-12/mboost/inst/doc/SurvivalEnsembles.pdf |binary mboost-2.9-12/mboost/inst/doc/mboost.R | 23 + mboost-2.9-12/mboost/inst/doc/mboost.Rnw | 48 ++- mboost-2.9-12/mboost/inst/doc/mboost.pdf |binary mboost-2.9-12/mboost/inst/doc/mboost_illustrations.R | 12 mboost-2.9-12/mboost/inst/doc/mboost_illustrations.Rnw | 31 +- mboost-2.9-12/mboost/inst/doc/mboost_illustrations.pdf |binary mboost-2.9-12/mboost/inst/doc/mboost_tutorial.R | 69 +++- mboost-2.9-12/mboost/inst/doc/mboost_tutorial.Rnw | 100 ++++-- mboost-2.9-12/mboost/inst/doc/mboost_tutorial.pdf |binary mboost-2.9-12/mboost/man/FP.Rd | 10 mboost-2.9-12/mboost/man/Family.Rd | 102 +----- mboost-2.9-12/mboost/man/IPCweights.Rd | 20 - mboost-2.9-12/mboost/man/baselearners.Rd | 148 ++-------- mboost-2.9-12/mboost/man/blackboost.Rd | 31 -- mboost-2.9-12/mboost/man/cvrisk.Rd | 17 - mboost-2.9-12/mboost/man/gamboost.Rd | 40 -- mboost-2.9-12/mboost/man/glmboost.Rd | 30 -- mboost-2.9-12/mboost/man/mboost_fit.Rd | 32 -- mboost-2.9-12/mboost/man/mboost_package.Rd | 45 --- mboost-2.9-12/mboost/man/methods.Rd | 43 -- mboost-2.9-12/mboost/man/plot.Rd | 6 mboost-2.9-12/mboost/man/stabsel.Rd | 29 - mboost-2.9-12/mboost/tests |only mboost-2.9-12/mboost/vignettes/SurvivalEnsembles.Rnw | 16 - mboost-2.9-12/mboost/vignettes/SurvivalEnsembles.Rout.save | 11 mboost-2.9-12/mboost/vignettes/mboost.Rnw | 48 ++- mboost-2.9-12/mboost/vignettes/mboost.Rout.save | 32 ++ mboost-2.9-12/mboost/vignettes/mboost_illustrations.Rnw | 31 +- mboost-2.9-12/mboost/vignettes/mboost_illustrations.Rout.save | 11 mboost-2.9-12/mboost/vignettes/mboost_tutorial.Rnw | 100 ++++-- mboost-2.9-12/mboost/vignettes/mboost_tutorial.Rout.save | 33 ++ 44 files changed, 646 insertions(+), 670 deletions(-)
Title: Support Functions and Datasets for Venables and Ripley's MASS
Description: Functions and datasets to support Venables and Ripley,
"Modern Applied Statistics with S" (4th edition, 2002).
Author: Brian Ripley [aut, cre, cph],
Bill Venables [aut, cph],
Douglas M. Bates [ctb],
Kurt Hornik [trl] ,
Albrecht Gebhardt [trl] ,
David Firth [ctb]
Maintainer: Brian Ripley <Brian.Ripley@R-project.org>
Diff between MASS versions 7.3-65 dated 2025-02-28 and 7.3-66 dated 2026-07-15
ChangeLog | 7 ++++++- DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ build/partial.rdb |binary inst/CITATION | 10 ++++++---- man/OME.Rd | 4 ++-- tests/polr.R | 4 ++-- 7 files changed, 27 insertions(+), 20 deletions(-)
Title: 'caret' Applications for Spatial-Temporal Models
Description: Supporting functionality to run 'caret' with spatial or spatial-temporal data.
'caret' is a frequently used package for model training and prediction using machine learning.
CAST includes functions to improve spatial or spatial-temporal modelling tasks using 'caret'.
It includes the newly suggested 'Nearest neighbor distance matching' cross-validation to estimate
the performance of spatial prediction models and allows for spatial variable selection to selects
suitable predictor variables in view to their contribution to the spatial model performance.
CAST further includes functionality to estimate the (spatial) area of applicability of prediction models.
Methods are described in
Meyer et al. (2018) <doi:10.1016/j.envsoft.2017.12.001>;
Meyer et al. (2019) <doi:10.1016/j.ecolmodel.2019.108815>;
Meyer and Pebesma (2021) <doi:10.1111/2041-210X.13650>;
Milà et al. (2022) <doi:10.1111/2041-210X.13851>;
Meyer and Pebesma (2022) <doi:10.1038/s41467-022-29838-9>;
L [...truncated...]
Author: Hanna Meyer [cre, aut],
Carles Mila [aut],
Marvin Ludwig [aut],
Jan Linnenbrink [aut],
Fabian Schumacher [aut],
Philipp Otto [ctb],
Chris Reudenbach [ctb],
Thomas Nauss [ctb],
Edzer Pebesma [ctb],
Jakub Nowosad [ctb],
Darius Goergen [ctb]
Maintainer: Hanna Meyer <hanna.meyer@uni-muenster.de>
Diff between CAST versions 1.1.0 dated 2026-06-19 and 1.1.1 dated 2026-07-15
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- NEWS.md | 3 +++ inst/doc/cast01-CAST-intro.R | 6 ++++-- inst/doc/cast01-CAST-intro.Rmd | 7 +++++-- inst/doc/cast01-CAST-intro.html | 4 ++-- inst/doc/cast02-plotgeodist.R | 5 +++-- inst/doc/cast02-plotgeodist.Rmd | 7 +++++-- inst/doc/cast02-plotgeodist.html | 4 ++-- inst/doc/cast03-CV.html | 4 ++-- inst/doc/cast04-AOA-tutorial.html | 4 ++-- inst/doc/cast05-parallel.html | 4 ++-- tests/testthat/test-bss.R | 1 + tests/testthat/test-global_validation.R | 4 ++++ vignettes/cast01-CAST-intro.Rmd | 7 +++++-- vignettes/cast02-plotgeodist.Rmd | 7 +++++-- 16 files changed, 63 insertions(+), 40 deletions(-)
Title: Varying-Coefficient Mixture-of-Experts Models
Description: Fits Gaussian, Binomial, and Negative-Binomial
varying-coefficient mixture-of-experts models with local-linear estimation,
explicit label alignment, bandwidth selection, diagnostics, bootstrap
inference, analytic-style confidence bands, coefficient-specific analytic
generalized likelihood-ratio test (GLRT) diagnostics with optional
bootstrap calibration, and local-grid or
joint-path expectation-maximization fitting engines.
Author: Qicheng Zhao [aut, cre],
Celia M.T. Greenwood [aut],
Qihuang Zhang [aut]
Maintainer: Qicheng Zhao <790471666@qq.com>
Diff between VCMoE versions 0.1.0 dated 2026-06-19 and 0.2.0 dated 2026-07-15
DESCRIPTION | 25 MD5 | 77 ++ NAMESPACE | 25 NEWS.md |only R/VCMoE-package.R |only R/asymptotic.R | 57 +- R/bandwidth.R | 77 ++ R/confband.R | 47 + R/diagnostics.R | 1 R/fit.R | 884 +++++++++++++++++++++++++++++++- R/glrt.R | 699 ++++++++++++++++++++++++- R/inference.R | 20 R/utils.R | 134 ++++ README.md | 52 + build/vignette.rds |binary inst/doc/vcmoe-binomial.R |only inst/doc/vcmoe-binomial.Rmd |only inst/doc/vcmoe-binomial.html |only inst/doc/vcmoe-gaussian-no-offset.R | 104 ++- inst/doc/vcmoe-gaussian-no-offset.Rmd | 189 ++++-- inst/doc/vcmoe-gaussian-no-offset.html | 308 ++++++----- inst/doc/vcmoe-joint-path.R |only inst/doc/vcmoe-joint-path.Rmd |only inst/doc/vcmoe-joint-path.html |only inst/doc/vcmoe-negbin.R |only inst/doc/vcmoe-negbin.Rmd |only inst/doc/vcmoe-negbin.html |only man/VCMoE-package.Rd |only man/vcmoe_bootstrap.Rd | 55 - man/vcmoe_confband.Rd | 33 - man/vcmoe_fit.Rd | 130 ++-- man/vcmoe_fit_reduced.Rd |only man/vcmoe_glrt.Rd | 75 +- man/vcmoe_select_bandwidth.Rd | 56 -- tests/testthat/fixtures |only tests/testthat/test-joint-path-engine.R |only tests/testthat/test-release-surface.R |only tests/testthat/test-v010-regression.R |only vignettes/vcmoe-binomial.Rmd |only vignettes/vcmoe-gaussian-no-offset.Rmd | 189 ++++-- vignettes/vcmoe-joint-path.Rmd |only vignettes/vcmoe-negbin.Rmd |only 42 files changed, 2682 insertions(+), 555 deletions(-)
Title: Targeted Inference
Description: Various methods for targeted and semiparametric inference including
augmented inverse probability weighted (AIPW) estimators for missing data and
causal inference (Bang and Robins (2005) <doi:10.1111/j.1541-0420.2005.00377.x>),
variable importance and conditional average treatment effects (CATE)
(van der Laan (2006) <doi:10.2202/1557-4679.1008>),
estimators for risk differences and relative risks (Richardson et al. (2017)
<doi:10.1080/01621459.2016.1192546>), assumption lean inference for generalized
linear model parameters (Vansteelandt et al. (2022) <doi:10.1111/rssb.12504>).
Author: Klaus K. Holst [aut, cre],
Benedikt Sommer [aut],
Andreas Nordland [aut],
Christian B. Pipper [ctb]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between targeted versions 0.7.1 dated 2026-01-12 and 0.8 dated 2026-07-15
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Title: Web Application for the SSD Module of the MOSAIC Platform
Description: Web application using 'shiny' for the SSD (Species
Sensitivity Distribution) module of the MOSAIC (MOdeling and
StAtistical tools for ecotoxICology) platform. It estimates the
Hazardous Concentration for x% of the species (HCx) from toxicity
values that can be censored and provides various plotting options for
a better understanding of the results. See our companion paper
Kon Kam King et al. (2014) <doi:10.48550/arXiv.1311.5772>.
Author: Aurelie Siberchicot [cre, aut] ,
Milena Kaag [aut],
Sandrine Charles [aut] ,
UMR5558 LBBE MEPS [cph, fnd],
rhandsontable contributors [ctb, cph]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between ssd4mosaic versions 1.0.4-2 dated 2025-09-12 and 1.0.4-3 dated 2026-07-15
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/R_functions.html | 8 ++++---- inst/golem-config.yml | 2 +- man/reexports.Rd | 2 +- 7 files changed, 17 insertions(+), 17 deletions(-)
Title: Improved Foreign Function Interface and Dynamic Bindings to C
Libraries
Description: Provides a cross-platform framework for dynamic binding of C libraries using a flexible Foreign Function Interface (FFI).
The FFI supports almost all fundamental C types, multiple calling conventions, symbolic access to foreign C struct/union data types and wrapping of R functions as C callback function pointers.
Dynamic bindings to shared C libraries are data-driven by cross-platform binding specifications using a compact plain text format; the package includes a 'DynPort' binding specification for 'SDL3' generated from current headers with 'porter'.
The package includes a variety of technology demos and OS-specific notes for installation of shared libraries. For the underlying methods and bundled 'DynCall' libraries, see Adler (2012) <doi:10.32614/RJ-2012-004> and Adler and Philipp (2008) <https://dyncall.org>.
Author: Daniel Adler [aut, cph],
Hongyuan Jia [aut, cre, cph],
Tassilo Philipp [ctb, cph],
Olivier Chafik [ctb, cph]
Maintainer: Hongyuan Jia <hongyuanjia@cqust.edu.cn>
This is a re-admission after prior archival of version 0.7.5 dated 2012-09-12
Diff between rdyncall versions 0.7.5 dated 2012-09-12 and 0.10.0 dated 2026-07-15
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Title: Core 'hubverse' Utilities
Description: Core set of low-level utilities common across the
'hubverse'. Used to interact with 'hubverse' schema, Hub configuration files
and model outputs and designed to be primarily used internally by other
'hubverse' packages. See Reich et al. (2022) <doi:10.2105/AJPH.2022.306831>
for an overview of Collaborative Hubs.
Author: Anna Krystalli [aut, cre] ,
Li Shandross [aut],
Nicholas G. Reich [ctb] ,
Evan L. Ray [ctb],
Zhian N. Kamvar [ctb] ,
Consortium of Infectious Disease Modeling Hubs [cph]
Maintainer: Anna Krystalli <annakrystalli@googlemail.com>
Diff between hubUtils versions 1.2.0 dated 2026-01-13 and 1.2.1 dated 2026-07-15
DESCRIPTION | 6 - MD5 | 8 +- NEWS.md | 4 + R/convert_output_type.R | 91 +++++++++++++++++++----------- tests/testthat/test-convert_output_type.R | 70 +++++++++++++++++++++++ 5 files changed, 140 insertions(+), 39 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-10 1.1.20
2024-04-19 1.1.18
2022-04-01 1.1.17
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-19 2.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-20 1.5
2018-01-02 1.4
2017-11-02 1.3
2017-07-03 1.2
2017-06-26 1.1
2017-05-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-01 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-04 1.57.3.1
2022-11-18 1.57.3
2022-11-16 1.57.2
2022-11-06 1.57.1
2021-03-23 1.56.0
2020-02-08 1.54.2
2018-09-29 1.53.1
2018-04-02 1.52.1
2018-01-04 1.52.0
2017-08-08 1.51.2
2017-03-28 1.50.2
2017-03-28 1.50.3
2017-03-26 1.50.1
2016-07-25 1.48.0
2015-09-04 1.47.1
2015-06-03 0.9.46
2015-01-27 0.9.45
2014-12-24 0.9.44
2014-05-12 0.9.43
2013-10-18 0.9.42
2013-01-04 0.9.41
2012-07-10 0.9.40
2012-01-28 0.9.39
2012-01-17 0.9.37
2012-01-03 0.9.36
2011-08-19 0.9.35
2011-04-04 0.9.34
2011-03-26 0.9.33
2010-12-01 0.9.32
2010-09-14 0.9.30
2010-09-08 0.9.29
2010-09-03 0.9.28
2010-01-11 0.9.26
2010-01-08 0.9.25
2009-12-06 0.9.24
2009-09-20 0.9.22
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-23 2.4.1
2019-05-31 2.3.1
2017-03-31 2.2.5
2017-03-26 2.2.4
2015-09-03 2.0.1
2014-03-17 1.2.0
2014-02-25 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-30 1.1.0
2021-05-11 1.0.0
Title: Threshold-Sweep QCA
Description: Provides threshold sweep methods for Qualitative Comparative
Analysis (QCA). Implements Condition Threshold Sweep-Single (CTS-S),
Condition Threshold Sweep-Multiple (CTS-M), Outcome Threshold Sweep (OTS),
and Dual Threshold Sweep (DTS) for systematic exploration of threshold
calibration effects on crisp-set QCA results. These methods extend
traditional robustness approaches by treating threshold variation as an
exploratory tool for discovering causal structures. Also provides Fiss
(2011) <doi:10.5465/amj.2011.60263120> core/peripheral condition
classification via compute_fiss_core() and generate_fiss_chart(), enabling
four-symbol configuration charts that distinguish core conditions (present
in both parsimonious and intermediate solutions) from peripheral conditions
(intermediate only). Built on top of the 'QCA' package by Dusa (2019)
<doi:10.1007/978-3-319-75668-4>, with function arguments following 'QCA'
conventions. Based on set-theoretic methods by Ragin (2008)
<doi: [...truncated...]
Author: Yuki Toyoda [aut, cre],
Japan Society for the Promotion of Science [fnd]
Maintainer: Yuki Toyoda <yuki.toyoda.ds@hosei.ac.jp>
Diff between ThSQCA versions 2.0.1 dated 2026-07-08 and 2.0.2 dated 2026-07-15
DESCRIPTION | 8 MD5 | 12 NEWS.md | 1639 +++++++++++++++++------------------ inst/CITATION | 2 inst/doc/ThSQCA_Reproducible_EN.html | 2 inst/doc/ThSQCA_Tutorial_EN.html | 2 man/ThSQCA-package.Rd | 2 7 files changed, 841 insertions(+), 826 deletions(-)
Title: Optimal Density Estimation via Shimazaki-Shinomoto Method
Description: Implements the Shimazaki-Shinomoto method for optimizing the
bin width of histograms and the bandwidth of kernel density estimators.
The framework minimizes the expected Mean Integrated Squared Error (MISE)
and supports both 1D and 2D distributions, fixed and locally adaptive
estimators, bootstrap confidence intervals, and 'OpenMP'-accelerated 'C++' 'backends'. Ideally suited for time-dependent rate estimation and
identifying intrinsic data structures. For more details see Shimazaki and
Shinomoto (2007) <doi:10.1162/neco.2007.19.6.1503> and Shimazaki and
Shinomoto (2010) <doi:10.1007/s10827-009-0180-4>.
Author: Daniil Popov [aut, cre]
Maintainer: Daniil Popov <popov.daniil@gmail.com>
Diff between sshist versions 0.2.2 dated 2026-07-09 and 0.2.3 dated 2026-07-15
DESCRIPTION | 6 MD5 | 48 +++---- NEWS.md | 24 +++ R/common.R | 3 R/sshist.R | 46 ++++++- R/sskernel.R | 38 +++-- R/ssvkernel.R | 234 ++++++++++++++++++++---------------- README.md | 2 inst/doc/ggplot2_visualization.R | 15 +- inst/doc/ggplot2_visualization.Rmd | 15 +- inst/doc/ggplot2_visualization.html | 8 - inst/doc/introduction.R | 23 +-- inst/doc/introduction.Rmd | 25 ++- inst/doc/introduction.html | 19 +- man/plot.sshist.Rd | 4 man/plot.sskernel.Rd | 3 man/plot.ssvkernel.Rd | 3 tests/testthat/test-sshist.R | 20 +++ tests/testthat/test-sshist_2d.R | 16 ++ tests/testthat/test-sskernel.R | 31 ++++ tests/testthat/test-sskernel_2d.R | 12 + tests/testthat/test-ssvkernel.R | 35 +++++ tests/testthat/test-ssvkernel_2d.R | 14 ++ vignettes/ggplot2_visualization.Rmd | 15 +- vignettes/introduction.Rmd | 25 ++- 25 files changed, 463 insertions(+), 221 deletions(-)
Title: Korean Text Analysis with 'MeCab'
Description: A Korean text-analysis layer over the 'MeCab' morphological
analyzer. Provides tokenizers that follow the 'tokenizers' contract for
use with 'tidytext', morpheme-aware n-grams, a curated Korean stopword
table, access to the KNU sentiment lexicon, friendly user-dictionary
management, predicate lemmatization, keyword extraction, keyword-in-context
concordances, and light text normalization. The native 'MeCab' interface
and dictionary compilation are provided by 'RcppMeCab'.
Author: Junhewk Kim [aut, cre]
Maintainer: Junhewk Kim <junhewk.kim@gmail.com>
Diff between RmecabKo versions 0.1.6.2 dated 2018-02-13 and 0.3.0 dated 2026-07-15
RmecabKo-0.1.6.2/RmecabKo/R/installdic.R |only RmecabKo-0.1.6.2/RmecabKo/man/RmecabKo.Rd |only RmecabKo-0.1.6.2/RmecabKo/man/install_dic.Rd |only RmecabKo-0.1.6.2/RmecabKo/src/Makevars |only RmecabKo-0.1.6.2/RmecabKo/src/Makevars.win |only RmecabKo-0.1.6.2/RmecabKo/src/nouns.cpp |only RmecabKo-0.1.6.2/RmecabKo/src/pos.cpp |only RmecabKo-0.3.0/RmecabKo/DESCRIPTION | 37 +- RmecabKo-0.3.0/RmecabKo/MD5 | 88 ++++-- RmecabKo-0.3.0/RmecabKo/NAMESPACE | 23 + RmecabKo-0.3.0/RmecabKo/NEWS.md |only RmecabKo-0.3.0/RmecabKo/R/RcppExports.R | 16 - RmecabKo-0.3.0/RmecabKo/R/data.R |only RmecabKo-0.3.0/RmecabKo/R/dictionary.R |only RmecabKo-0.3.0/RmecabKo/R/install.R | 136 --------- RmecabKo-0.3.0/RmecabKo/R/keywords.R |only RmecabKo-0.3.0/RmecabKo/R/kwic.R |only RmecabKo-0.3.0/RmecabKo/R/lemmatize.R |only RmecabKo-0.3.0/RmecabKo/R/lexicons.R |only RmecabKo-0.3.0/RmecabKo/R/ngrams.R | 107 ++++--- RmecabKo-0.3.0/RmecabKo/R/normalize.R |only RmecabKo-0.3.0/RmecabKo/R/nouns.R | 216 +------------- RmecabKo-0.3.0/RmecabKo/R/package.R | 86 ----- RmecabKo-0.3.0/RmecabKo/R/pos.R | 148 ++-------- RmecabKo-0.3.0/RmecabKo/R/stopwords.R |only RmecabKo-0.3.0/RmecabKo/R/tokenizers.R | 110 ++++--- RmecabKo-0.3.0/RmecabKo/R/utils.R | 283 +++++++++++++++++-- RmecabKo-0.3.0/RmecabKo/README.md | 306 ++++++++++++++++----- RmecabKo-0.3.0/RmecabKo/build |only RmecabKo-0.3.0/RmecabKo/data |only RmecabKo-0.3.0/RmecabKo/inst |only RmecabKo-0.3.0/RmecabKo/man/RmecabKo-package.Rd |only RmecabKo-0.3.0/RmecabKo/man/demo_ko.Rd |only RmecabKo-0.3.0/RmecabKo/man/dictionary.Rd |only RmecabKo-0.3.0/RmecabKo/man/install_mecab.Rd | 20 - RmecabKo-0.3.0/RmecabKo/man/keywords_textrank.Rd |only RmecabKo-0.3.0/RmecabKo/man/keywords_tfidf.Rd |only RmecabKo-0.3.0/RmecabKo/man/kwic.Rd |only RmecabKo-0.3.0/RmecabKo/man/lemmatize_morphemes.Rd |only RmecabKo-0.3.0/RmecabKo/man/lexicon_knu.Rd |only RmecabKo-0.3.0/RmecabKo/man/nouns.Rd | 28 - RmecabKo-0.3.0/RmecabKo/man/pos.Rd | 42 +- RmecabKo-0.3.0/RmecabKo/man/stopwords_ko.Rd |only RmecabKo-0.3.0/RmecabKo/man/stopwords_ko_tags.Rd |only RmecabKo-0.3.0/RmecabKo/man/stopwords_ko_words.Rd |only RmecabKo-0.3.0/RmecabKo/man/text_normalize.Rd |only RmecabKo-0.3.0/RmecabKo/man/token.Rd | 85 +++-- RmecabKo-0.3.0/RmecabKo/man/token_lemma.Rd |only RmecabKo-0.3.0/RmecabKo/man/token_ngrams.Rd | 74 +++-- RmecabKo-0.3.0/RmecabKo/man/words.Rd | 27 - RmecabKo-0.3.0/RmecabKo/src/RcppExports.cpp | 60 ---- RmecabKo-0.3.0/RmecabKo/src/n_grams.cpp | 120 +++++--- RmecabKo-0.3.0/RmecabKo/tests |only RmecabKo-0.3.0/RmecabKo/vignettes |only 54 files changed, 1079 insertions(+), 933 deletions(-)
Title: Companion to Portfolio Construction and Risk Analysis
Description: A collection of functions and data sets that support teaching
a quantitative finance MS level course on Portfolio Construction and Risk
Analysis, and the writing of a textbook for such a course. The package is
unique in providing several real-world data sets that may be used for problem
assignments and student projects. The data sets include cross-sections of
stock data from the Center for Research on Security Prices, LLC (CRSP),
corresponding factor exposures data from S&P Global, and several SP500 data
sets.
Author: Doug Martin [cre, aut],
Alexios Galanos [ctb],
Kirk Li [aut, ctb],
Jon Spinney [ctb],
Thomas Philips [ctb]
Maintainer: Doug Martin <martinrd3d@gmail.com>
Diff between PCRA versions 1.2.1 dated 2026-03-13 and 1.3.1 dated 2026-07-15
PCRA-1.2.1/PCRA/R/stocksCRSP.R |only PCRA-1.2.1/PCRA/README.md |only PCRA-1.2.1/PCRA/data/stocksCRSP.rda |only PCRA-1.2.1/PCRA/data/strategies.rda |only PCRA-1.2.1/PCRA/inst/doc/PCRAVignette.pdf |only PCRA-1.2.1/PCRA/inst/doc/PCRAVignette.pdf.asis |only PCRA-1.2.1/PCRA/man/stocksCRSP.Rd |only PCRA-1.2.1/PCRA/man/strategies.Rd |only PCRA-1.2.1/PCRA/vignettes/PCRAVignette.pdf.asis |only PCRA-1.3.1/PCRA/DESCRIPTION | 51 +- PCRA-1.3.1/PCRA/MD5 | 225 ++++++---- PCRA-1.3.1/PCRA/NAMESPACE | 28 + PCRA-1.3.1/PCRA/R/CRSPLiquidMktCapGrpsCnts.R |only PCRA-1.3.1/PCRA/R/CboeOptionStrategies.R |only PCRA-1.3.1/PCRA/R/ConferenceBoardETI.R |only PCRA-1.3.1/PCRA/R/KRest.R | 7 PCRA-1.3.1/PCRA/R/PCRA-package.R | 5 PCRA-1.3.1/PCRA/R/PCRAData.R | 54 +- PCRA-1.3.1/PCRA/R/SP400Industrials.R | 39 - PCRA-1.3.1/PCRA/R/SP425Industrials.R | 5 PCRA-1.3.1/PCRA/R/SP500.R | 36 - PCRA-1.3.1/PCRA/R/SP500data.R |only PCRA-1.3.1/PCRA/R/SP500from1967to2007.R | 5 PCRA-1.3.1/PCRA/R/SPIndustrials.R | 49 +- PCRA-1.3.1/PCRA/R/ShortDurationCredit.R |only PCRA-1.3.1/PCRA/R/USTreasuryTradeweb.R |only PCRA-1.3.1/PCRA/R/Utils.R |only PCRA-1.3.1/PCRA/R/bootEfronts.R | 4 PCRA-1.3.1/PCRA/R/buildPortfolios.R |only PCRA-1.3.1/PCRA/R/chart.Efront.R | 2 PCRA-1.3.1/PCRA/R/cleanOutliers.R | 2 PCRA-1.3.1/PCRA/R/data.R | 83 ++- PCRA-1.3.1/PCRA/R/ewmaMeanVol.R |only PCRA-1.3.1/PCRA/R/factorsSPGMI.R | 14 PCRA-1.3.1/PCRA/R/mathTport.R | 2 PCRA-1.3.1/PCRA/R/mathWtsEfrontRiskyMuCov.R | 2 PCRA-1.3.1/PCRA/R/meanReturns4Types.R | 4 PCRA-1.3.1/PCRA/R/minVarCashRisky.R |only PCRA-1.3.1/PCRA/R/minVarRiskyLO.R |only PCRA-1.3.1/PCRA/R/plotLSandHuberRobustSFM.R |only PCRA-1.3.1/PCRA/R/plotLSandRobustSFM.R | 57 +- PCRA-1.3.1/PCRA/R/psiHuber.R |only PCRA-1.3.1/PCRA/R/runMultipleBacktests.R |only PCRA-1.3.1/PCRA/R/runPortfolioBacktest.R |only PCRA-1.3.1/PCRA/R/selectCRSPandSPGMI.R | 14 PCRA-1.3.1/PCRA/R/stocksCRSPdailyweekly.R |only PCRA-1.3.1/PCRA/R/stocksCRSPmonthly.R |only PCRA-1.3.1/PCRA/R/stocksCRSPxts.R | 18 PCRA-1.3.1/PCRA/R/to_monthly.R |only PCRA-1.3.1/PCRA/R/to_weekly.R |only PCRA-1.3.1/PCRA/R/transferCoef.R |only PCRA-1.3.1/PCRA/R/tsPlotMP.R | 4 PCRA-1.3.1/PCRA/R/updateDevPkg.R |only PCRA-1.3.1/PCRA/build/vignette.rds |binary PCRA-1.3.1/PCRA/data/BXMdata.rda |only PCRA-1.3.1/PCRA/data/CRSPLiquidMktCapGrpsCnts.rda |only PCRA-1.3.1/PCRA/data/CboeOptionStrategies.rda |only PCRA-1.3.1/PCRA/data/ConferenceBoardETI.rda |only PCRA-1.3.1/PCRA/data/FRBinterestRates.rda |binary PCRA-1.3.1/PCRA/data/HFstrategies.rda |only PCRA-1.3.1/PCRA/data/MarketData.rda |only PCRA-1.3.1/PCRA/data/SP400Industrials.rda |binary PCRA-1.3.1/PCRA/data/SP425Industrials.rda |binary PCRA-1.3.1/PCRA/data/SP500.rda |binary PCRA-1.3.1/PCRA/data/SP500data.rda |only PCRA-1.3.1/PCRA/data/SP500from1967to2007.rda |binary PCRA-1.3.1/PCRA/data/SPIndustrials.rda |binary PCRA-1.3.1/PCRA/data/ShortDurationCredit.rda |only PCRA-1.3.1/PCRA/data/USTreasuryTradeweb.rda |only PCRA-1.3.1/PCRA/data/crsp.returns8.rda |binary PCRA-1.3.1/PCRA/data/datFF3W.rda |binary PCRA-1.3.1/PCRA/data/datFF4W.rda |binary PCRA-1.3.1/PCRA/data/factorsSPGMI.rda |binary PCRA-1.3.1/PCRA/data/gfunds5.rda |binary PCRA-1.3.1/PCRA/data/invensysEPS.rda |binary PCRA-1.3.1/PCRA/data/retDD.rda |binary PCRA-1.3.1/PCRA/data/retEDS.rda |binary PCRA-1.3.1/PCRA/data/retFNB.rda |binary PCRA-1.3.1/PCRA/data/retKBH.rda |binary PCRA-1.3.1/PCRA/data/retMER.rda |binary PCRA-1.3.1/PCRA/data/retOFG.rda |binary PCRA-1.3.1/PCRA/data/retPSC.rda |binary PCRA-1.3.1/PCRA/data/retVHI.rda |binary PCRA-1.3.1/PCRA/data/retWTS.rda |binary PCRA-1.3.1/PCRA/data/stocksCRSPmonthly.rda |only PCRA-1.3.1/PCRA/demo/00Index | 8 PCRA-1.3.1/PCRA/demo/Ch2_Foundations_demo.R |only PCRA-1.3.1/PCRA/demo/Ch3_ModelingAssetReturns_demo.R |only PCRA-1.3.1/PCRA/demo/Ch4_CovarianceMatrices_demo.R |only PCRA-1.3.1/PCRA/demo/Ch5_Portfolio_Constraints_and_Penalties_demo.R |only PCRA-1.3.1/PCRA/demo/IntroductionCRSPstocksAndSPGMIfactors.R |only PCRA-1.3.1/PCRA/demo/RobustStatisticsForPortfoliosJPM2023.R | 14 PCRA-1.3.1/PCRA/inst/doc/CRSPStocksAndSPGMIFactorsInPCRA.pdf |only PCRA-1.3.1/PCRA/inst/doc/CRSPStocksAndSPGMIFactorsInPCRA.pdf.asis |only PCRA-1.3.1/PCRA/inst/doc/PCRAPackageAndDataOverview.pdf |only PCRA-1.3.1/PCRA/inst/doc/PCRAPackageAndDataOverview.pdf.asis |only PCRA-1.3.1/PCRA/inst/doc/PCRAReproducibility.pdf |only PCRA-1.3.1/PCRA/inst/doc/PCRAReproducibility.pdf.asis |only PCRA-1.3.1/PCRA/man/BXMdata.Rd |only PCRA-1.3.1/PCRA/man/CRSPLiquidMktCapGrpsCnts.Rd |only PCRA-1.3.1/PCRA/man/CboeOptionStrategies.Rd |only PCRA-1.3.1/PCRA/man/ConferenceBoardETI.Rd |only PCRA-1.3.1/PCRA/man/HFstrategies.Rd |only PCRA-1.3.1/PCRA/man/KRest.Rd | 2 PCRA-1.3.1/PCRA/man/MarketData.Rd |only PCRA-1.3.1/PCRA/man/PCRA-package.Rd | 10 PCRA-1.3.1/PCRA/man/SP400Industrials.Rd | 39 - PCRA-1.3.1/PCRA/man/SP425Industrials.Rd | 5 PCRA-1.3.1/PCRA/man/SP500.Rd | 36 - PCRA-1.3.1/PCRA/man/SP500data.Rd |only PCRA-1.3.1/PCRA/man/SP500from1967to2007.Rd | 5 PCRA-1.3.1/PCRA/man/SPIndustrials.Rd | 49 +- PCRA-1.3.1/PCRA/man/ShortDurationCredit.Rd |only PCRA-1.3.1/PCRA/man/USTreasuryTradeweb.Rd |only PCRA-1.3.1/PCRA/man/abbreviate_name.Rd |only PCRA-1.3.1/PCRA/man/buildPortfolios.Rd |only PCRA-1.3.1/PCRA/man/cleanOutliers.Rd | 2 PCRA-1.3.1/PCRA/man/crsp.returns8.Rd | 4 PCRA-1.3.1/PCRA/man/datFF3W.Rd | 2 PCRA-1.3.1/PCRA/man/datFF4W.Rd | 2 PCRA-1.3.1/PCRA/man/ewmaMeanVol.Rd |only PCRA-1.3.1/PCRA/man/factorsSPGMI.Rd | 10 PCRA-1.3.1/PCRA/man/getPCRAData.Rd | 8 PCRA-1.3.1/PCRA/man/gfunds5.Rd | 2 PCRA-1.3.1/PCRA/man/invensysEPS.Rd | 2 PCRA-1.3.1/PCRA/man/minVarCashRisky.Rd |only PCRA-1.3.1/PCRA/man/minVarRiskyLO.Rd |only PCRA-1.3.1/PCRA/man/plotLSandHuberRobustSFM.Rd |only PCRA-1.3.1/PCRA/man/psiHuber.Rd |only PCRA-1.3.1/PCRA/man/retDD.Rd | 2 PCRA-1.3.1/PCRA/man/retEDS.Rd | 2 PCRA-1.3.1/PCRA/man/retFNB.Rd | 2 PCRA-1.3.1/PCRA/man/retKBH.Rd | 2 PCRA-1.3.1/PCRA/man/retMER.Rd | 2 PCRA-1.3.1/PCRA/man/retOFG.Rd | 2 PCRA-1.3.1/PCRA/man/retPSC.Rd | 2 PCRA-1.3.1/PCRA/man/retVHI.Rd | 2 PCRA-1.3.1/PCRA/man/retWTS.Rd | 2 PCRA-1.3.1/PCRA/man/runMultipleBacktests.Rd |only PCRA-1.3.1/PCRA/man/runPortfolioBacktest.Rd |only PCRA-1.3.1/PCRA/man/selectCRSPandSPGMI.Rd | 4 PCRA-1.3.1/PCRA/man/stocksCRSPdaily.Rd |only PCRA-1.3.1/PCRA/man/stocksCRSPmonthly.Rd |only PCRA-1.3.1/PCRA/man/stocksCRSPweekly.Rd |only PCRA-1.3.1/PCRA/man/stocksCRSPxts.Rd | 16 PCRA-1.3.1/PCRA/man/to_monthly.Rd |only PCRA-1.3.1/PCRA/man/to_weekly.Rd |only PCRA-1.3.1/PCRA/man/transferCoef.Rd |only PCRA-1.3.1/PCRA/man/tsPlotMP.Rd | 4 PCRA-1.3.1/PCRA/man/update_dev_pkg.Rd |only PCRA-1.3.1/PCRA/vignettes/CRSPStocksAndSPGMIFactorsInPCRA.pdf.asis |only PCRA-1.3.1/PCRA/vignettes/PCRAPackageAndDataOverview.pdf.asis |only PCRA-1.3.1/PCRA/vignettes/PCRAReproducibility.pdf.asis |only 153 files changed, 593 insertions(+), 359 deletions(-)
Title: Creates Group Sequential Trial Designs when Early Outcomes are
Available
Description: Methods to construct and power group sequential clinical trial
designs for outcomes at multiple times. Outcomes at earlier times provide
information on the final (primary) outcome. A range of recruitment and
correlation models are available as are methods to simulate data in order to
explore design operating characteristics. For more details see Parsons (2024)
<doi:10.1186/s12874-024-02174-w>.
Author: Nick Parsons [aut, cre]
Maintainer: Nick Parsons <nick.parsons@warwick.ac.uk>
Diff between gsearly versions 1.1.0 dated 2026-07-10 and 1.1.1 dated 2026-07-15
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/implementation_functions.R | 6 +++--- R/output_functions.R | 4 ++-- R/plot_functions.R | 2 +- R/recruitment_functions.R | 2 +- R/simulation_functions.R | 20 +++++++++++++------- R/utility_functions.R | 2 +- R/validation_functions.R | 2 +- man/gsearlyFit.Rd | 11 ++++++----- 10 files changed, 41 insertions(+), 34 deletions(-)
Title: A Collection of Empirical and Simulated Relational Event Data
Sequences
Description: Empirical and simulated data for relational event analyses.
Each dataset consists of a relational event sequence and optional actor attributes.
Individual datasets are redistributed under their original licenses
as documented in inst/DATA_LICENSES.
Author: Joris Mulder [aut, cre],
Roger Leenders [aut],
Diana Karimova [aut],
Marlyne Meijerink-Bosman [aut],
Giuseppe Arena [aut],
Rumana Lakdawala [aut],
Mahdi Shafiee Kamalabad [ctb],
Fabio Generoso Vieira [ctb]
Maintainer: Joris Mulder <j.mulder3@tilburguniversity.edu>
Diff between remdata versions 0.2.0 dated 2026-05-28 and 0.2.1 dated 2026-07-15
DESCRIPTION | 6 +-- MD5 | 74 +++++++++++++++++++++++++----------------------- R/ICCSS17.R | 2 - R/WS16.R | 2 - R/highschool2011.R | 2 - R/highschool2012.R | 2 - R/highschool2013.R | 2 - R/hospitalward.R | 2 - R/households.R | 2 - R/primaryschool.R | 2 - R/random_data.R | 50 ++++++++++++++++++++++++++++++++ R/team4.R | 2 - R/workplace2013.R | 2 - R/workplace2015.R | 2 - data/ICCSS17.rda |binary data/WS16.rda |binary data/highschool2011.rda |binary data/highschool2012.rda |binary data/highschool2013.rda |binary data/hospitalward.rda |binary data/households.rda |binary data/info2.rda |only data/primaryschool.rda |binary data/randomREH2.rda |only data/team4.rda |binary data/workplace2013.rda |binary data/workplace2015.rda |binary man/ICCSS17.Rd | 2 - man/WS16.Rd | 2 - man/highschool2011.Rd | 2 - man/highschool2012.Rd | 2 - man/highschool2013.Rd | 2 - man/hospitalward.Rd | 2 - man/households.Rd | 2 - man/info2.Rd |only man/primaryschool.Rd | 2 - man/randomREH2.Rd |only man/team4.Rd | 2 - man/workplace2013.Rd | 2 - man/workplace2015.Rd | 2 - 40 files changed, 114 insertions(+), 60 deletions(-)
Title: Visualizing Class Specific Heterogeneous Tendencies in
Categorical Data
Description: Provides functions for performing multiple-class cluster correspondence analysis(MCCCA). The main functions are create.MCCCAdata() to create a list to be applied to MCCCA, MCCCA() to apply MCCCA, and plot.mccca() for visualizing MCCCA result. Methods used in the package are described in Mariko Takagishi and Michel van de Velden (2022)<doi:10.1080/10618600.2022.2035737>.
Author: Mariko Takagishi [aut, cre]
Maintainer: Mariko Takagishi <m.takagishi0728@gmail.com>
Diff between mccca versions 1.1.0.1 dated 2024-01-24 and 2.2 dated 2026-07-15
mccca-1.1.0.1/mccca/R/split.data.byext.comb.func.R |only mccca-1.1.0.1/mccca/man/create.prop.Rd |only mccca-1.1.0.1/mccca/man/generate.cate.list.Rd |only mccca-1.1.0.1/mccca/man/generate.catecls.Rd |only mccca-2.2/mccca/DESCRIPTION | 22 mccca-2.2/mccca/MD5 | 82 + mccca-2.2/mccca/NAMESPACE | 22 mccca-2.2/mccca/R/MCCCA.func.R | 892 ++++++++++++++------- mccca-2.2/mccca/R/RcppExports.R | 32 mccca-2.2/mccca/R/calc.adInertia.R |only mccca-2.2/mccca/R/create.MCCCAdata.func.R | 132 +-- mccca-2.2/mccca/R/create.prop.func.R | 11 mccca-2.2/mccca/R/data.R |only mccca-2.2/mccca/R/decideK.R |only mccca-2.2/mccca/R/generate.cate.func.R | 2 mccca-2.2/mccca/R/generate.catecls.func.R | 2 mccca-2.2/mccca/R/generate.ext.func.R | 19 mccca-2.2/mccca/R/generate.onedata.func.R | 21 mccca-2.2/mccca/R/globals.R | 5 mccca-2.2/mccca/R/index.KLed.R |only mccca-2.2/mccca/R/plot.MCCCA.func.R | 536 +++++++----- mccca-2.2/mccca/R/plot.calcindex.R |only mccca-2.2/mccca/R/splitdata.byext.comb.func.R |only mccca-2.2/mccca/R/summary.MCCCAclass.R |only mccca-2.2/mccca/R/summary.calcIndex.R |only mccca-2.2/mccca/R/summary.mccca.R |only mccca-2.2/mccca/R/textplot.cord.R | 12 mccca-2.2/mccca/R/updateUG.MCCCA.func.R | 5 mccca-2.2/mccca/R/various.func.R | 117 ++ mccca-2.2/mccca/R/wordlayout.ed.R |only mccca-2.2/mccca/data |only mccca-2.2/mccca/man/MCCCA.Rd | 170 +--- mccca-2.2/mccca/man/accident.Rd |only mccca-2.2/mccca/man/create.MCCCAdata.Rd | 89 +- mccca-2.2/mccca/man/decideK.Rd |only mccca-2.2/mccca/man/generate.ext.Rd | 18 mccca-2.2/mccca/man/generate.onedata.Rd | 18 mccca-2.2/mccca/man/mccca-package.Rd |only mccca-2.2/mccca/man/mealDrink.Rd |only mccca-2.2/mccca/man/plot.calcIndex.Rd |only mccca-2.2/mccca/man/plot.mccca.Rd | 129 +-- mccca-2.2/mccca/man/rcpp_hello_world.Rd |only mccca-2.2/mccca/man/summary.calcIndex.Rd |only mccca-2.2/mccca/man/summary.mccca.Rd |only mccca-2.2/mccca/man/summary.mcccadata.Rd |only mccca-2.2/mccca/src/Makevars.win | 3 mccca-2.2/mccca/src/RcppExports.cpp | 104 +- mccca-2.2/mccca/src/calc_3mat.cpp |only mccca-2.2/mccca/src/calc_Dsqsolve.cpp |only mccca-2.2/mccca/src/calc_MnDumB.cpp |only mccca-2.2/mccca/src/calc_MnZDsq.cpp |only mccca-2.2/mccca/src/create_centering.cpp | 6 mccca-2.2/mccca/src/objfunc.cpp | 13 mccca-2.2/mccca/src/rcpp_hello_world.cpp |only mccca-2.2/mccca/src/updateB_func.cpp | 25 mccca-2.2/mccca/src/updateG_func.cpp | 2 56 files changed, 1597 insertions(+), 892 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cph],
Julia Piaskowski [cre, aut],
Balazs Banfai [ctb],
Ben Bolker [ctb],
Paul Buerkner [ctb],
Iago Gine-Vazquez [ctb],
Maxime Herve [ctb],
Maarten Jung [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Hannes Riebl [ctb],
Hen [...truncated...]
Maintainer: Julia Piaskowski <julia.piask@gmail.com>
Diff between emmeans versions 2.0.3 dated 2026-04-09 and 2.0.4 dated 2026-07-15
DESCRIPTION | 18 MD5 | 163 + NEWS.md | 14 R/0nly-internal.R | 1148 +++++++------- R/MCMC-support.R | 1426 ++++++++--------- R/S4-classes.R | 252 +-- R/aovlist-support.R | 412 ++--- R/betareg.support.R | 262 +-- R/brms-support.R | 64 R/cld-emm.R | 516 +++--- R/contrast.R | 1262 +++++++-------- R/countreg-support.R | 638 +++---- R/datasets.R | 690 ++++---- R/eff-size.R | 322 +-- R/emm-contr.R | 1142 ++++++------- R/emm-example.R | 152 - R/emm-list.R | 765 ++++----- R/emmGrid-methods.R | 2208 +++++++++++++-------------- R/emmeans-package.R | 246 +-- R/emmeans.R | 5 R/emmip.R | 1178 +++++++------- R/emtrends.R | 9 R/factors.R | 764 ++++----- R/gam-support.R | 560 +++--- R/glht-support.R | 488 ++--- R/helpers.R | 1790 ++++++++++----------- R/interfacing.R | 924 +++++------ R/lqm-support.R | 244 +- R/models.R | 62 R/multinom-support.R | 268 +-- R/multiple-models.R | 372 ++-- R/multiv.R | 530 +++--- R/nested.R | 854 +++++----- R/nonlin-support.R | 288 +-- R/ordinal-support.R | 828 +++++----- R/plot.emm.R | 1222 +++++++------- R/pwpp.R | 1106 ++++++------- R/qdrg.R | 602 +++---- R/rbind.R | 385 ++-- R/ref-grid.R | 2562 +++++++++++++++---------------- R/rms-support.R | 238 +- R/sommer-support.R | 132 - R/summary.R | 3025 ++++++++++++++++++------------------- R/test.R | 1090 ++++++------- R/transformations.R | 958 +++++------ R/wrappers.R | 256 +-- R/xtable-method.R | 258 +-- R/zzz.R | 332 ++-- README.md | 2 build/vignette.rds |binary inst/doc/AQuickStart.html | 4 inst/doc/FAQs.html | 8 inst/doc/basics.html | 6 inst/doc/comparisons.html | 12 inst/doc/confidence-intervals.html | 14 inst/doc/interactions.html | 16 inst/doc/messy-data.html | 7 inst/doc/models.html | 4 inst/doc/predictions.html | 4 inst/doc/re-engineering-clds.html | 6 inst/doc/sophisticated.R | 3 inst/doc/sophisticated.Rmd | 3 inst/doc/sophisticated.html | 11 inst/doc/transformations.html | 6 inst/doc/utilities.html | 4 inst/doc/vignette-topics.html | 4 inst/doc/xplanations.html | 7 inst/doc/xtending.html | 23 man/MOats.Rd | 2 man/auto.noise.Rd | 2 man/emm_options.Rd | 5 man/emtrends.Rd | 9 man/feedlot.Rd | 2 man/fiber.Rd | 2 man/figures/logo.png |binary man/figures/old_logo.png |only man/neuralgia.Rd | 2 man/nutrition.Rd | 2 man/oranges.Rd | 2 man/pigs.Rd | 2 man/ubds.Rd | 2 tests/testthat/test-cross-adjust.R |only tests/testthat/test-head-tail.R |only vignettes/sophisticated.Rmd | 3 84 files changed, 16621 insertions(+), 16588 deletions(-)
Title: A Collection of Database, Data Structure, Data Conversion,
Visualization, Reporting, and General Utility Functions
Description: This R-extension package contains dozens of functions useful
for: database style joins [nerge()] & aggregation [bestBy(), groupBy() & regroup()],
database migration [dbWriteTable2()], file I/O [write.delim(), read.tab()],
text parsing / data mining [m()], data structure conversion [nv(), tab2df()],
summarizing & reporting [pct(), fit.1ln.rprt()], character string manipulation [m() & pad()],
legend table making [sstable() & leghead()] & plot placement [legend.position()],
plot annotation [labsegs() & mvlabs()], data visualization [pies(), spie(), & heatmatrix()],
and data exploration [hyperplot(), plot.xy.ab.p()], batch scripting [parseArgString()].
The package's greatest contributions stem from its database style merge,
aggregation and interface functions as well as in it's extensive
use and propagation of row, column and vector names in most functions.
The latest additions are plotting functions [confound.grid() & sparge()] that intake
a dataframe & [...truncated...]
Author: David Schruth [aut, cre]
Maintainer: David Schruth <code@anthropoidea.org>
Diff between caroline versions 1.1.1 dated 2026-07-06 and 1.1.2 dated 2026-07-15
caroline-1.1.1/caroline/R/distro.dots.R |only caroline-1.1.1/caroline/man/distro.dots.Rd |only caroline-1.1.1/caroline/man/makeElipseCoords.Rd |only caroline-1.1.2/caroline/DESCRIPTION | 32 - caroline-1.1.2/caroline/MD5 | 109 ++-- caroline-1.1.2/caroline/NEWS.md | 12 caroline-1.1.2/caroline/R/models.R | 20 caroline-1.1.2/caroline/R/plot.sparge.R | 47 -- caroline-1.1.2/caroline/R/plots.R | 67 ++ caroline-1.1.2/caroline/R/zzz.R | 2 caroline-1.1.2/caroline/build/vignette.rds |binary caroline-1.1.2/caroline/inst/CITATION | 32 - caroline-1.1.2/caroline/inst/doc/Schruth-caroline-GlobalForestLosses.R | 189 ++++++-- caroline-1.1.2/caroline/inst/doc/Schruth-caroline-GlobalForestLosses.Rnw | 225 +++++++--- caroline-1.1.2/caroline/inst/doc/Schruth-caroline-GlobalForestLosses.pdf |binary caroline-1.1.2/caroline/inst/extdata/forest/GFW-loss-alltrees.national-drivers-country.LU.csv | 2 caroline-1.1.2/caroline/inst/extdata/forest/GFW-loss-tropical.national-drivers-country.LU.csv | 2 caroline-1.1.2/caroline/inst/extdata/forest/GFW-loss-tropical.subnatnl-drivers-country.LU.csv | 2 caroline-1.1.2/caroline/inst/extdata/jungle |only caroline-1.1.2/caroline/man/addFactLevs.Rd | 2 caroline-1.1.2/caroline/man/bestBy.Rd | 10 caroline-1.1.2/caroline/man/dbWriteTable2.Rd | 8 caroline-1.1.2/caroline/man/ellipsis.defaults.Rd | 6 caroline-1.1.2/caroline/man/fit.1ln.rprt.Rd | 14 caroline-1.1.2/caroline/man/geomean.Rd | 4 caroline-1.1.2/caroline/man/groupBy.Rd | 6 caroline-1.1.2/caroline/man/heatmatrix.Rd | 21 caroline-1.1.2/caroline/man/hyperplot.Rd | 4 caroline-1.1.2/caroline/man/install.prev.pkg.Rd | 2 caroline-1.1.2/caroline/man/labsegs.Rd | 2 caroline-1.1.2/caroline/man/m.Rd | 4 caroline-1.1.2/caroline/man/makeEllipseCoords.Rd |only caroline-1.1.2/caroline/man/mvlabs.Rd | 13 caroline-1.1.2/caroline/man/nerge.Rd | 8 caroline-1.1.2/caroline/man/nv.Rd | 8 caroline-1.1.2/caroline/man/nv2df.Rd | 8 caroline-1.1.2/caroline/man/pad.Rd | 5 caroline-1.1.2/caroline/man/parseArgStrings.Rd | 7 caroline-1.1.2/caroline/man/pct.Rd | 8 caroline-1.1.2/caroline/man/pies.Rd | 20 caroline-1.1.2/caroline/man/plot.confound.grid.Rd | 27 - caroline-1.1.2/caroline/man/plot.sparge.Rd | 54 +- caroline-1.1.2/caroline/man/plot.xy.ab.p.Rd | 14 caroline-1.1.2/caroline/man/plotClock.Rd | 3 caroline-1.1.2/caroline/man/raAddArms.Rd | 2 caroline-1.1.2/caroline/man/raPlot.Rd | 2 caroline-1.1.2/caroline/man/read.tab.Rd | 4 caroline-1.1.2/caroline/man/regroup.Rd | 6 caroline-1.1.2/caroline/man/rerowname.Rd | 4 caroline-1.1.2/caroline/man/spieChart.Rd | 34 - caroline-1.1.2/caroline/man/sstable.Rd | 8 caroline-1.1.2/caroline/man/tab2df.Rd | 4 caroline-1.1.2/caroline/man/textplot.Rd | 4 caroline-1.1.2/caroline/man/usr2lims.Rd | 4 caroline-1.1.2/caroline/man/vennMatrix.Rd | 6 caroline-1.1.2/caroline/man/wjitter.Rd | 10 caroline-1.1.2/caroline/man/write.delim.Rd | 2 caroline-1.1.2/caroline/vignettes/Schruth-caroline-GlobalForestLosses.Rnw | 225 +++++++--- 58 files changed, 845 insertions(+), 469 deletions(-)
Title: Baseline Functions for Actigraphy and Activity Processing and
Analysis
Description: Provides baseline functions for actigraphy and activity data.
This package is intended to be extended by downstream overlays such as
'actiread', 'actimetrics', and 'stepcount'.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between actibase versions 0.2.0 dated 2026-06-18 and 0.3.0 dated 2026-07-15
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/get_dynamic_range.R | 12 +++++++++--- R/get_sample_rate.R | 4 ++++ tests/testthat/test-flag-helpers.R | 18 ++++++++++++++++++ 6 files changed, 43 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-06-09 0.9.0
2025-10-09 0.7.1
2024-01-18 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-09 1.0.4
2026-04-01 1.0.3
2026-03-16 1.0.2
2026-02-24 1.0.1
2026-01-13 1.0.0
2025-10-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-13 2.1.1
2026-03-16 2.1.0
2025-09-23 2.0.6
2025-06-15 2.0.5
2025-06-05 2.0.4
2025-01-29 2.0.3
2024-11-20 2.0.2
2024-11-13 2.0.1
2024-11-12 2.0.0
2024-06-04 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-02 0.2.5
2026-06-26 0.2.4
2026-06-21 0.2.2
Title: Tidying, Analysis, and Fast Visualization of Animal and Plant
Pedigrees
Description: Provides tools for the analysis and visualization of animal and
plant pedigrees. Analytical methods include equivalent complete generations,
generation intervals, effective population size (via inbreeding, coancestry,
and demographic approaches), founder and ancestor contributions, partial
inbreeding, genetic diversity indices, and additive (A), dominance (D), and
epistatic (AA) relationship matrices. Core algorithms — ancestry tracing,
topological sorting, inbreeding coefficients, and matrix construction — are
implemented in C++ ('Rcpp', 'RcppArmadillo') and 'data.table', scaling to
pedigrees with over one million individuals. Matrix-free pedigree
traversals apply additive relationship matrices or their inverses to
vectors and matrices without materializing dense square matrices. Pedigree
graphs are rendered via 'igraph' with support for compact full-sib family
display; relationship matrices can be visualized as heatmaps. Supports
complex mating systems, including selfing and pedigree [...truncated...]
Author: Sheng Luan [aut, cre]
Maintainer: Sheng Luan <luansheng@gmail.com>
Diff between visPedigree versions 1.8.1 dated 2026-03-30 and 1.9.0 dated 2026-07-15
DESCRIPTION | 21 MD5 | 107 +-- NAMESPACE | 2 NEWS.md | 541 +++++++---------- R/RcppExports.R | 16 R/globals.R | 1 R/pedanalysis.R | 554 +++++++++++------ R/pedhalflife.R | 18 R/pedmatrix.R | 3 R/pedprod.R |only R/vismat.R | 108 +++ R/visped.R | 233 ++++++- R/visped_graph.R | 14 R/visped_layout.R | 23 R/visped_render.R | 29 R/visped_style.R | 170 ++++- README.md | 16 build/partial.rdb |only inst/doc/draw-pedigree.R | 50 + inst/doc/draw-pedigree.Rmd | 104 +++ inst/doc/draw-pedigree.html | 418 ++++++++----- inst/doc/pedigree-analysis.Rmd | 49 + inst/doc/pedigree-analysis.html | 123 ++- inst/doc/relationship-matrix.R | 121 +++ inst/doc/relationship-matrix.Rmd | 317 +++++++++ inst/doc/relationship-matrix.html | 604 +++++++++++++++---- inst/doc/tidy-pedigree.R | 30 inst/doc/tidy-pedigree.Rmd | 71 ++ inst/doc/tidy-pedigree.html | 171 +++++ man/apply_node_styles.Rd | 2 man/ped2igraph.Rd | 4 man/pedhalflife.Rd | 5 man/pediv.Rd | 3 man/pedmat.Rd | 3 man/pedne.Rd | 4 man/pedprod.Rd |only man/pedrel.Rd | 31 man/plot_ped_igraph.Rd | 10 man/prepare_initial_nodes.Rd | 2 man/prepare_ped_graph.Rd | 2 man/prepare_visped_geninfo.Rd |only man/prepare_visped_genlab.Rd |only man/prepare_visped_labels.Rd |only man/resolve_visped_genlabcex.Rd |only man/vismat.Rd | 4 man/visped.Rd | 73 ++ src/RcppExports.cpp | 56 - src/pedigree_calculators.cpp | 248 +++---- tests/testthat/Rplots.pdf |only tests/testthat/test-pedanalysis.R | 11 tests/testthat/test-pedne-matrix-free.R |only tests/testthat/test-pedprod.R |only tests/testthat/test-pedrel-matrix-free.R |only tests/testthat/test-summary-pedmat-vismat-vispstat.R | 28 tests/testthat/test-tidyped.R | 1 tests/testthat/test-visped.R | 324 ++++++++++ vignettes/draw-pedigree.Rmd | 104 +++ vignettes/pedigree-analysis.Rmd | 49 + vignettes/relationship-matrix.Rmd | 317 +++++++++ vignettes/tidy-pedigree.Rmd | 71 ++ 60 files changed, 4022 insertions(+), 1244 deletions(-)
Title: Data Structures and Algorithms for Relations
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate functions,
and fitters for consensus relations.
Author: David Meyer [aut] ,
Kurt Hornik [aut, cre] ,
Christian Buchta [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between relations versions 0.6-17 dated 2026-03-26 and 0.6-18 dated 2026-07-15
DESCRIPTION | 6 +- MD5 | 32 +++++++-------- R/algebra.R | 44 +++++++++++++-------- build/partial.rdb |binary build/vignette.rds |binary data/Cetacea.rda |binary data/Felines.rda |binary data/SVM_Benchmarking_Classification.rda |binary data/SVM_Benchmarking_Classification_Consensus.rda |binary data/SVM_Benchmarking_Regression.rda |binary data/SVM_Benchmarking_Regression_Consensus.rda |binary inst/NEWS.Rd | 7 +++ inst/doc/relations.R | 2 inst/doc/relations.pdf |binary man/algebra.Rd | 11 +++++ man/relation.Rd | 12 +++-- man/scores.Rd | 3 - 17 files changed, 76 insertions(+), 41 deletions(-)
Title: Test Theory Analysis and Biclustering
Description: Implements comprehensive test data engineering methods as described in
Shojima (2022, ISBN:978-9811699856). Provides statistical techniques for
engineering and processing test data: Classical Test Theory (CTT) with
reliability coefficients for continuous ability assessment; Item Response
Theory (IRT) including Rasch, 2PL, and 3PL models with item/test information
functions; Latent Class Analysis (LCA) for nominal clustering; Latent Rank
Analysis (LRA) for ordinal clustering with automatic determination of cluster
numbers; Biclustering methods including infinite relational models for
simultaneous clustering of examinees and items without predefined cluster
numbers; and Bayesian Network Models (BNM) for visualizing inter-item
dependencies. Features local dependence analysis through LRA and biclustering,
parameter estimation, dimensionality assessment, and network structure
visualization for educational, psychological, and social science research.
Author: Koji Kosugi [aut, cre]
Maintainer: Koji Kosugi <kosugitti@gmail.com>
Diff between exametrika versions 1.14.0 dated 2026-06-14 and 1.15.0 dated 2026-07-15
exametrika-1.14.0/exametrika/R/00_BiclucterUtils.R |only exametrika-1.14.0/exametrika/R/02_TestItemFunctions.R |only exametrika-1.14.0/exametrika/R/04B_AbilityEstimation.R |only exametrika-1.14.0/exametrika/tests/testthat/Rplots.pdf |only exametrika-1.15.0/exametrika/DESCRIPTION | 6 exametrika-1.15.0/exametrika/MD5 | 178 +- exametrika-1.15.0/exametrika/NEWS.md | 442 ++++++ exametrika-1.15.0/exametrika/R/00_BiclusterUtils.R |only exametrika-1.15.0/exametrika/R/00_EMclus.R | 2 exametrika-1.15.0/exametrika/R/00_GridSearch.R | 125 + exametrika-1.15.0/exametrika/R/00_exametrikaPlot.R | 10 exametrika-1.15.0/exametrika/R/00_exametrikaPrint.R | 731 ---------- exametrika-1.15.0/exametrika/R/00_print_biclustering.R |only exametrika-1.15.0/exametrika/R/00_print_ctt_irt.R |only exametrika-1.15.0/exametrika/R/00_print_lca_lra.R |only exametrika-1.15.0/exametrika/R/00_print_network.R |only exametrika-1.15.0/exametrika/R/01_dataFormat.R | 202 +- exametrika-1.15.0/exametrika/R/02E_ItemAssociation.R |only exametrika-1.15.0/exametrika/R/02F_ItemDifficulty.R |only exametrika-1.15.0/exametrika/R/02G_StudentScore.R |only exametrika-1.15.0/exametrika/R/02_QitemFunctions.R | 10 exametrika-1.15.0/exametrika/R/03_CTT.R | 4 exametrika-1.15.0/exametrika/R/04C_ParameterEstimation.R | 18 exametrika-1.15.0/exametrika/R/05_LCA.R | 4 exametrika-1.15.0/exametrika/R/06_LRA.R | 3 exametrika-1.15.0/exametrika/R/07_Biclustering.R | 78 - exametrika-1.15.0/exametrika/R/07_IRM.R | 41 exametrika-1.15.0/exametrika/R/08A_BNM.R | 52 exametrika-1.15.0/exametrika/R/08C_BNM_GA.R | 27 exametrika-1.15.0/exametrika/R/09B_LDLRA_GA.R | 22 exametrika-1.15.0/exametrika/R/09_LDLRA.R | 35 exametrika-1.15.0/exametrika/R/10_LDB.R | 40 exametrika-1.15.0/exametrika/R/11_BINET.R | 62 exametrika-1.15.0/exametrika/R/13_LRA_rated.R | 27 exametrika-1.15.0/exametrika/R/14_grm.R | 4 exametrika-1.15.0/exametrika/R/15_Biclustering_nominal.R | 34 exametrika-1.15.0/exametrika/R/16_Biclustering_ordinal.R | 37 exametrika-1.15.0/exametrika/R/17_Biclustering_nominal_IRM.R | 30 exametrika-1.15.0/exametrika/R/18_Biclustering_ordinal_IRM.R | 37 exametrika-1.15.0/exametrika/R/19_Biclustering_rated.R | 11 exametrika-1.15.0/exametrika/R/20_Biclustering_rated_IRM.R | 7 exametrika-1.15.0/exametrika/R/21_DistractorAnalysis.R | 12 exametrika-1.15.0/exametrika/R/22_GlassoUnit.R | 8 exametrika-1.15.0/exametrika/R/23_Chatterjee.R | 2 exametrika-1.15.0/exametrika/build/vignette.rds |binary exametrika-1.15.0/exametrika/inst/doc/irt.html | 88 - exametrika-1.15.0/exametrika/inst/doc/network-models.html | 26 exametrika-1.15.0/exametrika/man/BINET.Rd | 20 exametrika-1.15.0/exametrika/man/BNM.Rd | 8 exametrika-1.15.0/exametrika/man/BNM_GA.Rd | 10 exametrika-1.15.0/exametrika/man/BNM_PBIL.Rd | 10 exametrika-1.15.0/exametrika/man/Biclustering.Rd | 21 exametrika-1.15.0/exametrika/man/Biclustering_IRM.Rd | 35 exametrika-1.15.0/exametrika/man/BiserialCorrelation.Rd | 2 exametrika-1.15.0/exametrika/man/CCRR.Rd | 2 exametrika-1.15.0/exametrika/man/CSR.Rd | 2 exametrika-1.15.0/exametrika/man/Dimensionality.Rd | 2 exametrika-1.15.0/exametrika/man/GRM.Rd | 4 exametrika-1.15.0/exametrika/man/GridSearch.Rd | 8 exametrika-1.15.0/exametrika/man/IRT.Rd | 4 exametrika-1.15.0/exametrika/man/ITBiserial.Rd | 2 exametrika-1.15.0/exametrika/man/ItemEntropy.Rd | 2 exametrika-1.15.0/exametrika/man/ItemLift.Rd | 2 exametrika-1.15.0/exametrika/man/ItemOdds.Rd | 2 exametrika-1.15.0/exametrika/man/ItemThreshold.Rd | 2 exametrika-1.15.0/exametrika/man/ItemTotalCorr.Rd | 2 exametrika-1.15.0/exametrika/man/JCRR.Rd | 2 exametrika-1.15.0/exametrika/man/JSR.Rd | 2 exametrika-1.15.0/exametrika/man/JointSampleSize.Rd | 2 exametrika-1.15.0/exametrika/man/LCA.Rd | 4 exametrika-1.15.0/exametrika/man/LDB.Rd | 8 exametrika-1.15.0/exametrika/man/LDLRA.Rd | 12 exametrika-1.15.0/exametrika/man/LDLRA_PBIL.Rd | 23 exametrika-1.15.0/exametrika/man/LD_param_est.Rd | 4 exametrika-1.15.0/exametrika/man/LRA.Rd | 2 exametrika-1.15.0/exametrika/man/MutualInformation.Rd | 2 exametrika-1.15.0/exametrika/man/PhiCoefficient.Rd | 2 exametrika-1.15.0/exametrika/man/PolychoricCorrelationMatrix.Rd | 2 exametrika-1.15.0/exametrika/man/TetrachoricCorrelationMatrix.Rd | 2 exametrika-1.15.0/exametrika/man/chatterjee_matrix.Rd | 2 exametrika-1.15.0/exametrika/man/crr.Rd | 2 exametrika-1.15.0/exametrika/man/dataFormat.Rd | 6 exametrika-1.15.0/exametrika/man/longdataFormat.Rd | 12 exametrika-1.15.0/exametrika/man/nrs.Rd | 2 exametrika-1.15.0/exametrika/man/passage.Rd | 2 exametrika-1.15.0/exametrika/man/percentile.Rd | 2 exametrika-1.15.0/exametrika/man/polychoric.Rd | 2 exametrika-1.15.0/exametrika/man/polyserial.Rd | 2 exametrika-1.15.0/exametrika/man/sscore.Rd | 2 exametrika-1.15.0/exametrika/man/stanine.Rd | 2 exametrika-1.15.0/exametrika/man/tetrachoric.Rd | 2 exametrika-1.15.0/exametrika/tests/testthat/test-dataFormat-edge.R | 59 exametrika-1.15.0/exametrika/tests/testthat/test-dataFormat.R | 4 exametrika-1.15.0/exametrika/tests/testthat/test-irm-gibbs-cpp.R | 4 exametrika-1.15.0/exametrika/tests/testthat/test-irm-ordinal.R | 3 exametrika-1.15.0/exametrika/tests/testthat/test-regression-1150.R |only exametrika-1.15.0/exametrika/tests/testthat/test-smoke-reliability.R |only 97 files changed, 1385 insertions(+), 1345 deletions(-)
Title: Chronological Objects which Can Handle Dates and Times
Description: Provides chronological objects which can handle dates and times.
Author: David James [aut] ,
Kurt Hornik [aut, trl, cre] ,
Gabor Grothendieck [ctb],
R Core Team [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between chron versions 2.3-62 dated 2024-12-31 and 2.3-63 dated 2026-07-15
ChangeLog | 12 +++++++++++- DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/utils.R | 14 ++++++++------ man/chron.Rd | 5 +++++ man/dates.Rd | 24 ++++++++++++++++-------- 6 files changed, 50 insertions(+), 25 deletions(-)