Title: Classes and Methods for Seismic Data Analysis
Description: Provides classes and methods for seismic data analysis. The
base classes and methods are inspired by the python code found in
the 'ObsPy' python toolbox <https://github.com/obspy/obspy>. Additional classes and
methods support data returned by web services provided by the EarthScope Consortium.
<https://service.earthscope.org/>.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Gillian Sharer [aut, cre],
Mary Templeton [aut],
Chad Trabant [ctb, cph] ),
H. Philip Crotwell [cph] )
Maintainer: Gillian Sharer <gillian.sharer@earthscope.org>
Diff between IRISSeismic versions 1.9.0 dated 2026-06-18 and 1.10.0 dated 2026-07-20
IRISSeismic-1.10.0/IRISSeismic/DESCRIPTION | 25 IRISSeismic-1.10.0/IRISSeismic/MD5 | 164 -- IRISSeismic-1.10.0/IRISSeismic/NAMESPACE | 4 IRISSeismic-1.10.0/IRISSeismic/R/Class-IrisClient.R | 621 +++++----- IRISSeismic-1.10.0/IRISSeismic/R/Utils.R | 60 IRISSeismic-1.10.0/IRISSeismic/R/spectralUtils.R | 3 IRISSeismic-1.10.0/IRISSeismic/build/partial.rdb |only IRISSeismic-1.10.0/IRISSeismic/inst/CITATION |only IRISSeismic-1.10.0/IRISSeismic/inst/NOTICE |only IRISSeismic-1.10.0/IRISSeismic/inst/doc/IRISSeismic-intro.R | 4 IRISSeismic-1.10.0/IRISSeismic/inst/doc/IRISSeismic-intro.Rmd | 9 IRISSeismic-1.10.0/IRISSeismic/inst/doc/IRISSeismic-intro.html | 100 - IRISSeismic-1.10.0/IRISSeismic/inst/java |only IRISSeismic-1.10.0/IRISSeismic/inst/licenses |only IRISSeismic-1.10.0/IRISSeismic/java |only IRISSeismic-1.10.0/IRISSeismic/man/IRISSeismic-deprecated.Rd | 7 IRISSeismic-1.10.0/IRISSeismic/man/IRISSeismic-package.Rd | 10 IRISSeismic-1.10.0/IRISSeismic/man/Stream-class.Rd | 2 IRISSeismic-1.10.0/IRISSeismic/man/getChannel.Rd | 99 - IRISSeismic-1.10.0/IRISSeismic/man/getDataselect.Rd | 90 - IRISSeismic-1.10.0/IRISSeismic/man/getDistaz.Rd | 4 IRISSeismic-1.10.0/IRISSeismic/man/getEvent.Rd | 47 IRISSeismic-1.10.0/IRISSeismic/man/getNetwork.Rd | 90 - IRISSeismic-1.10.0/IRISSeismic/man/getStation.Rd | 104 + IRISSeismic-1.10.0/IRISSeismic/man/getTraveltime.Rd | 3 IRISSeismic-1.10.0/IRISSeismic/man/taupTraveltime.Rd |only IRISSeismic-1.10.0/IRISSeismic/vignettes/IRISSeismic-intro.Rmd | 9 IRISSeismic-1.9.0/IRISSeismic/src/libmseed/doc |only IRISSeismic-1.9.0/IRISSeismic/src/libmseed/example |only IRISSeismic-1.9.0/IRISSeismic/src/libmseed/test |only 30 files changed, 809 insertions(+), 646 deletions(-)
Title: Evolutionary Algorithm
Description: Runs an evolutionary algorithm using the 'AlphaSimR' machinery <doi:10.1093/g3journal/jkaa017> .
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between evola versions 1.0.7 dated 2025-11-17 and 1.0.8 dated 2026-07-20
DESCRIPTION | 8 MD5 | 27 - NAMESPACE | 4 R/AllClass.R | 5 R/evolafit.R | 5 R/plotting_funs.R | 56 ++ R/utlis.R | 3 inst/doc/evola_intro.R | 282 ++++++------- inst/doc/evola_intro.Rmd | 270 ++++++------ inst/doc/evola_intro.html | 956 ++++++++++++++++++++++------------------------ man/plot.alpha.by.qtl.Rd |only man/plot.pareto.Rd | 31 + man/summary.method.Rd | 3 man/update.method.Rd | 4 vignettes/evola_intro.Rmd | 270 ++++++------ 15 files changed, 981 insertions(+), 943 deletions(-)
Title: Miniature Logistic-Normal Multinomial Models
Description: Logistic-normal Multinomial (LNM) models are common in problems with multivariate count data. This package gives a simple implementation with a 30 line 'Stan' script. This lightweight implementation makes it an easy starting point for other projects, in particular for downstream tasks that require analysis of "compositional" data. It can be applied whenever a multinomial probability parameter is thought to depend linearly on inputs in a transformed, log ratio space. Additional utilities make it easy to inspect, create predictions, and draw samples using the fitted models. More about the LNM can be found in Xia et al. (2013) "A Logistic Normal Multinomial Regression Model for Microbiome Compositional Data Analysis" <doi:10.1111/biom.12079> and Sankaran and Holmes (2023) "Generative Models: An Interdisciplinary Perspective" <doi:10.1146/annurev-statistics-033121-110134>.
Author: Kris Sankaran [aut, cre]
Maintainer: Kris Sankaran <ksankaran@wisc.edu>
Diff between miniLNM versions 0.1.0 dated 2024-09-13 and 0.1.2 dated 2026-07-20
DESCRIPTION | 13 ++++---- MD5 | 30 +++++++++--------- NAMESPACE | 1 R/estimate.R | 39 +++++++++++------------- build/vignette.rds |binary inst/doc/demo.html | 65 ++++++++++++++++++++--------------------- man/beta_mean.Rd | 6 +-- man/beta_samples.Rd | 6 +-- man/lnm.Rd | 6 +-- man/predict-lnm-method.Rd | 6 +-- man/prepare_newdata.Rd | 4 +- man/sample-lnm-method.Rd | 6 +-- src/stanExports_lnm.cc | 34 ++++++++++----------- tests/testthat/test-estimate.R | 4 +- tests/testthat/test-predict.R | 4 +- tests/testthat/test-sample.R | 4 +- 16 files changed, 114 insertions(+), 114 deletions(-)
Title: Tools for Easy Use of the 'e-Stat' API
Description: Provides tools to use the 'e-Stat' API
(<https://www.e-stat.go.jp/>), the portal site for Japanese
government statistics.
Author: Mizuki Uchida [aut, cre]
Maintainer: Mizuki Uchida <uchidamizuki@vivaldi.net>
Diff between jpstat versions 0.4.0 dated 2023-07-15 and 0.5.0 dated 2026-07-20
jpstat-0.4.0/jpstat/R/resas.R |only jpstat-0.4.0/jpstat/R/webland.R |only jpstat-0.4.0/jpstat/man/webland.Rd |only jpstat-0.4.0/jpstat/tests/testthat/test-webland.R |only jpstat-0.5.0/jpstat/DESCRIPTION | 22 - jpstat-0.5.0/jpstat/MD5 | 41 +- jpstat-0.5.0/jpstat/NAMESPACE | 11 jpstat-0.5.0/jpstat/NEWS.md | 94 +++-- jpstat-0.5.0/jpstat/R/deprecated.R | 40 ++ jpstat-0.5.0/jpstat/R/estat.R | 311 ++++++++++--------- jpstat-0.5.0/jpstat/R/jpstat-package.R | 1 jpstat-0.5.0/jpstat/R/sysdata.rda |binary jpstat-0.5.0/jpstat/R/utils.R | 43 +- jpstat-0.5.0/jpstat/R/zzz.R | 4 jpstat-0.5.0/jpstat/README.md | 218 ++++--------- jpstat-0.5.0/jpstat/man/collect.estat.Rd |only jpstat-0.5.0/jpstat/man/estat.Rd | 8 jpstat-0.5.0/jpstat/man/estat_table_info.Rd | 10 jpstat-0.5.0/jpstat/man/jpstat.Rd | 9 jpstat-0.5.0/jpstat/man/reexports.Rd | 2 jpstat-0.5.0/jpstat/man/resas.Rd | 40 -- jpstat-0.5.0/jpstat/man/summary.estat.Rd |only jpstat-0.5.0/jpstat/tests/testthat/test-deprecated.R |only jpstat-0.5.0/jpstat/tests/testthat/test-estat.R | 5 jpstat-0.5.0/jpstat/tests/testthat/test-resas.R | 132 -------- 25 files changed, 430 insertions(+), 561 deletions(-)
Title: Estimation and Exogenous Covariate Selection for ARCH-m(X),
Additive ARCH-m(x), and GARCH-X Models
Description: Estimates the parameters and nonparametric functions of an ARCH-m(X) model with exogenous covariates, estimates the parameters and nonparametric functions of an Additive ARCH-m(X) model with exogenous covariates, estimates the parameters of a GARCH-X model with exogenous covariates, performs hypothesis tests for the covariates returning the p-values, and performs stepwise variable selection on the exogenous covariates, and uses False Discovery Rate p-value corrections to select the exogenous variables.
Author: Adriano Zambom [aut, cre],
Vincent Alegrete [aut],
Elijah Sagaran [aut],
Avni Israni [aut]
Maintainer: Adriano Zambom <adriano.zambom@csun.edu>
Diff between GARCH.X versions 2.0 dated 2026-04-21 and 3.0 dated 2026-07-20
DESCRIPTION | 6 MD5 | 43 ++-- R/AIC.ARCHmX.R | 4 R/AIC.ARCHmXAdditive.R | 3 R/ARCHmX.R | 8 R/ARCHmXAdditive.R | 8 R/ARCHmXAdditive_alpha_bootstrap.R |only R/ARCHmXAdditive_backfitting_variance_smooth.R | 246 +++++++++++++------------ R/ARCHmXAdditive_edf.R |only R/ARCHmX_alpha_bootstrap.R |only R/BIC.ARCHmX.R | 4 R/BIC.ARCHmXAdditive.R | 5 R/new_ARCHmX.R | 21 +- R/new_ARCHmXAdditive.R | 27 +- R/new_GARCHX.R | 218 +++++++++++----------- R/predict.ARCHmX.R | 6 R/predict.ARCHmXAdditive.R | 2 R/sim.GARCHX.R | 2 R/stepwise.R | 12 - R/summary.ARCHmX.R | 8 R/summary.ARCHmXAdditive.R | 4 R/summary.GARCHX.R | 7 man/ARCHmX.Rd | 13 + man/ARCHmXAdditive.Rd | 190 +++++++++---------- 24 files changed, 446 insertions(+), 391 deletions(-)
Title: Computation of the Sparse Inverse Subset
Description: Creates a wrapper for the 'SuiteSparse' routines
that execute the Takahashi equations. These equations compute the
elements of the inverse of a sparse matrix at locations where the
its Cholesky factor is structurally non-zero. The resulting matrix is known as a
sparse inverse subset. Some helper functions are also implemented.
Support for spam matrices is currently limited and will be implemented
in the future. See Rue and Martino (2007) <doi:10.1016/j.jspi.2006.07.016>
and Zammit-Mangion and Rougier (2018) <doi:10.1016/j.csda.2018.02.001> for the
application of these equations to statistics.
Author: Andrew Zammit-Mangion [aut, cre],
Timothy Davis [ctb],
Patrick Amestoy [ctb],
Iain Duff [ctb],
John K. Reid [ctb]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>
Diff between sparseinv versions 0.1.3 dated 2018-08-23 and 0.1.4 dated 2026-07-20
DESCRIPTION | 11 +++++------ MD5 | 18 +++++++++--------- R/RcppExports.R | 14 +++++++------- R/fns.R | 8 ++------ man/Takahashi_Davis.Rd | 8 +------- man/cholPermute.Rd | 2 -- man/cholsolve.Rd | 16 +++++++++------- man/cholsolveAQinvAT.Rd | 6 +----- man/sparseinv-package.Rd | 13 +++++++++++++ src/RcppExports.cpp | 5 +++++ 10 files changed, 52 insertions(+), 49 deletions(-)
Title: Convenient Access to MTA Open Data API Endpoints
Description: Provides helper functions to access datasets from the
Metropolitan Transportation Authority (MTA) portion of the New York
State Open Data platform <https://data.ny.gov/>. Returns results as
tidy tibbles with support for optional filtering, sorting, and row
limits through the Socrata API.
Author: Christian Martinez [aut, cre]
Maintainer: Christian Martinez <c.martinez0@outlook.com>
This is a re-admission after prior archival of version 0.1.0 dated 2026-04-01
Diff between mtaOpenData versions 0.1.0 dated 2026-04-01 and 0.1.1 dated 2026-07-20
mtaOpenData-0.1.0/mtaOpenData/tests |only mtaOpenData-0.1.1/mtaOpenData/DESCRIPTION | 6 mtaOpenData-0.1.1/mtaOpenData/MD5 | 31 -- mtaOpenData-0.1.1/mtaOpenData/R/mta_any_dataset.R | 76 ++++- mtaOpenData-0.1.1/mtaOpenData/R/mta_list_datasets.R | 47 ++- mtaOpenData-0.1.1/mtaOpenData/R/mta_pull_dataset.R | 181 +++++++++--- mtaOpenData-0.1.1/mtaOpenData/R/utils_request.R | 13 mtaOpenData-0.1.1/mtaOpenData/README.md | 19 + mtaOpenData-0.1.1/mtaOpenData/inst/doc/getting-started.html | 22 - mtaOpenData-0.1.1/mtaOpenData/man/mta_any_dataset.Rd | 57 +++ mtaOpenData-0.1.1/mtaOpenData/man/mta_list_datasets.Rd | 42 ++ mtaOpenData-0.1.1/mtaOpenData/man/mta_pull_dataset.Rd | 130 ++++++-- 12 files changed, 472 insertions(+), 152 deletions(-)
Title: Extended Graphical Model Checks for the Rasch Family of Models
Description: The function plotLRT() draws pairwise graphical model checks for
the Rasch Model (RM; Rasch, 1960),
the Partial Credit Model (PCM; Masters, 1982), and
the Rating Scale Model (RSM; Andrich, 1978)
using the output object of eRm::LRtest().
The function cLRT() provides a conditional Likelihood Ratio Test
(Andersen, 1973), using the routines of 'psychotools' (Zeileis et al., 2026).
Users may choose to plot
the threshold parameters,
the cumulative thresholds,
the average thresholds per item, or
the person parameters.
Extended coloring options allow for automated item-wise or
threshold-wise coloring. For multi-group splits, all pairwise
group comparisons are drawn automatically.
The function plotMLT() draws a graphical model check
for the Martin-Loef-Test (MLT).
If type='persons', it draws scatterplots of the person parameter
estimates of each pair of item sub-groups.
If type='items', it draws a scatterplot of the item/threshold
parameter estimates of each of the two sub-groups vertically
aga [...truncated...]
Author: Rainer W. Alexandrowicz [aut, cre]
Maintainer: Rainer W. Alexandrowicz <rainer.alexandrowicz@aau.at>
Diff between GMX versions 0.9-2 dated 2026-03-10 and 0.9-3 dated 2026-07-20
DESCRIPTION | 24 +++++++++++++----------- MD5 | 14 ++++++++------ NAMESPACE | 2 +- NEWS | 8 ++++++-- R/gmx_aux.r | 12 ++++++------ R/plotLRT.r | 39 +++++++++++++++++++++++---------------- R/plotMLT.r |only man/plotLRT.Rd | 14 +++++++------- man/plotMLT.Rd |only 9 files changed, 64 insertions(+), 49 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-21 0.1.5
2014-10-25 0.1.4
Title: Filtering Algorithms for the State Space Models on the Stiefel
Manifold
Description: Provides the filtering algorithms for the state space models on the Stiefel manifold as well as the corresponding sampling algorithms for uniform, vector Langevin-Bingham and matrix Langevin-Bingham distributions on the Stiefel manifold.
Author: Yukai Yang [aut, cre]
Maintainer: Yukai Yang <yukai.yang@statistik.uu.se>
Diff between SMFilter versions 1.0.3 dated 2018-12-12 and 1.0.5 dated 2026-07-20
DESCRIPTION | 13 - MD5 | 32 +-- NEWS.md | 11 + R/SMFilter.R | 3 R/simulation.R | 4 R/utils.R | 5 README.md |only build/vignette.rds |binary inst/CITATION |only inst/doc/readme.R | 54 +++-- inst/doc/readme.Rmd | 18 + inst/doc/readme.html | 510 ++++++++++++++++++++++++++++++++++++++++----------- man/FilterModel1.Rd | 3 man/FilterModel2.Rd | 3 man/SMFilter.Rd | 19 + man/SimModel1.Rd | 16 + man/SimModel2.Rd | 16 + vignettes/readme.Rmd | 18 + 18 files changed, 550 insertions(+), 175 deletions(-)
Title: Quantile G-Computation Extensions for Effect Measure
Modification
Description: G-computation for a set of time-fixed exposures
with quantile-based basis functions, possibly under linearity and
homogeneity assumptions. Effect measure modification in this method is a way
to assess how the effect of the mixture varies by a binary, categorical or continuous variable.
Reference: Alexander P. Keil, Jessie P.
Buckley, Katie M. OBrien, Kelly K. Ferguson, Shanshan Zhao, and
Alexandra J. White (2019) A quantile-based g-computation approach to
addressing the effects of exposure mixtures; <doi:10.1289/EHP5838>.
Author: Alexander Keil [aut, cre, cph]
Maintainer: Alexander Keil <alex.keil@nih.gov>
Diff between qgcompint versions 1.0.2 dated 2025-07-22 and 1.0.4 dated 2026-07-20
DESCRIPTION | 16 - MD5 | 22 +- NEWS.md | 11 + R/base.R | 1 R/base_boot.R | 1 R/base_calcweights.R | 15 + R/base_esteq.R | 1 R/base_survival.R | 1 R/base_utility.R | 16 + README.md | 5 build/vignette.rds |binary inst/doc/qgcompint-vignette.html | 325 ++++++++++++++++++--------------------- 12 files changed, 214 insertions(+), 200 deletions(-)
Title: Spatiotemporal Arrays, Raster and Vector Data Cubes
Description: Reading, manipulating, writing and plotting
spatiotemporal arrays (raster and vector data cubes) in 'R', using 'GDAL'
bindings provided by 'sf', and 'NetCDF' bindings by 'ncmeta' and 'RNetCDF'.
Author: Edzer Pebesma [aut, cre] ,
Michael Sumner [ctb] ,
Etienne Racine [ctb],
Adriano Fantini [ctb],
David Blodgett [ctb],
Krzysztof Dyba [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between stars versions 0.7-2 dated 2026-04-03 and 0.7-3 dated 2026-07-20
DESCRIPTION | 27 ++++----- MD5 | 117 ++++++++++++++++++++-------------------- NAMESPACE | 1 NEWS.md | 12 ++++ R/aggregate.R | 100 +++++++++++++++++++++++++++++----- R/extract.R | 11 +++ R/init.R | 1 R/ncdf.R | 2 R/plot.R | 26 +++++++- R/prcomp.R | 6 +- R/raster.R | 12 +--- R/sf.R | 2 R/subset.R | 12 +++- build/vignette.rds |binary inst/doc/stars1.html | 17 +++-- inst/doc/stars2.html | 10 +-- inst/doc/stars4.html | 8 +- inst/doc/stars5.html | 6 +- inst/doc/stars8.html | 6 +- man/aggregate.stars.Rd | 23 +++++++ man/coerce-methods.Rd | 13 +--- man/prcomp.Rd | 6 +- man/read_ncdf.Rd | 2 man/st_as_stars.Rd | 4 - man/st_contour.Rd | 2 man/stars_subset.Rd | 4 - tests/aggregate.R | 18 +++++- tests/aggregate.Rout.save | 30 ++++++++-- tests/align.Rout.save | 4 - tests/area.Rout.save | 4 - tests/crop.R | 2 tests/crop.Rout.save | 6 +- tests/curvilinear.Rout.save | 4 - tests/datasets.Rout.save | 4 - tests/dimensions.Rout.save | 4 - tests/downsample.Rout.save | 4 - tests/ee.Rout.save | 4 - tests/extract.R | 2 tests/extract.Rout.save | 6 +- tests/gridtypes.Rout.save | 4 - tests/mdim.Rout.save | 4 - tests/nc.Rout.save | 4 - tests/plot.Rout.save | 4 - tests/predict.Rout.save | 4 - tests/proxy.Rout.save | 4 - tests/raster.Rout.save | 4 - tests/rasterize.Rout.save | 4 - tests/rectilinear.Rout.save | 4 - tests/redimension.Rout.save | 4 - tests/sf.Rout.save | 4 - tests/sp.Rout.save | 4 - tests/spacetime.Rout.save | 4 - tests/spatstat.Rout.save | 4 - tests/stars.Rout.save | 4 - tests/subset.Rout.save | 4 - tests/testthat/test-aggregate.R |only tests/tidy.Rout.save | 4 - tests/transform.Rout.save | 4 - tests/warp.Rout.save | 4 - tests/write.Rout.save | 4 - 60 files changed, 383 insertions(+), 219 deletions(-)
Title: A Collection of Functions for Directional Data Analysis
Description: A collection of functions for directional data (including massive data, with millions of observations) analysis.
Hypothesis testing, discriminant and regression analysis, MLE of distributions and more are included.
The standard textbook for such data is the "Directional Statistics" by Mardia, K. V. and Jupp, P. E. (2000).
Other references include:
a) Paine J.P., Preston S.P., Tsagris M. and Wood A.T.A. (2018). "An elliptically symmetric angular Gaussian distribution". Statistics and Computing 28(3): 689-697. <doi:10.1007/s11222-017-9756-4>.
b) Tsagris M. and Alenazi A. (2019). "Comparison of discriminant analysis methods on the sphere". Communications in Statistics: Case Studies, Data Analysis and Applications 5(4):467--491. <doi:10.1080/23737484.2019.1684854>.
c) Paine J.P., Preston S.P., Tsagris M. and Wood A.T.A. (2020). "Spherical regression models with general covariates and anisotropic errors". Statistics and Computing 30(1): 153--165. <doi:10.1007/s11222-019-09872 [...truncated...]
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Christos Adam [aut],
Zehao Yu [aut],
Anamul Sajib [ctb],
Eli Amson [ctb],
Micah J. Waldstein [ctb],
Panagiotis Papastamoulis [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Directional versions 7.6 dated 2026-06-17 and 7.7 dated 2026-07-20
DESCRIPTION | 8 +-- MD5 | 28 +++++------ R/bic.mixpkbd.R | 21 +++++--- R/bic.mixspcauchy.R | 25 ++++++---- R/bic.mixvmf.R | 19 +++++--- R/cipc.reg.R | 8 +-- R/circ.cors2.R | 4 - R/circpurka.reg.R | 106 ++++++++++++++++++++++++++++++++++----------- R/gcpc.mle2.R | 8 ++- R/mixpkbd.mle.R | 2 R/mixspcauchy.mle.R | 2 R/mixvmf.mle.R | 2 R/spml.reg.R | 9 ++- man/Directional-package.Rd | 4 - man/spml.reg.Rd | 37 ++++++++++----- 15 files changed, 187 insertions(+), 96 deletions(-)
Title: Rigorous Data Reduction and Error Propagation of Ar40 / Ar39
Data
Description: Processes noble gas mass spectrometer data to determine the isotopic composition of argon (comprised of Ar36, Ar37, Ar38, Ar39 and Ar40) released from neutron-irradiated potassium-bearing minerals. Then uses these compositions to calculate precise and accurate geochronological ages for multiple samples as well as the covariances between them. Error propagation is done in matrix form, which jointly treats all samples and all isotopes simultaneously at every step of the data reduction process. Includes methods for regression of the time-resolved mass spectrometer signals to t=0 ('time zero') for both single- and multi-collector instruments, blank correction, mass fractionation correction, detector intercalibration, decay corrections, interference corrections, interpolation of the irradiation parameter between neutron fluence monitors, and (weighted mean) age calculation. All operations are performed on the logs of the ratios between the different argon isotopes so as to properly treat th [...truncated...]
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between ArArRedux versions 1.0 dated 2018-10-03 and 1.1 dated 2026-07-20
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++---------- R/age.R | 4 ++-- R/plot.R | 1 + R/timezero.R | 8 ++++++++ R/toolbox.R | 17 +++++++++++++++++ man/getages.Rd | 4 ++-- man/newredux.Rd | 7 +++++-- man/read.Rd | 13 +++++++++++-- man/redux2isoplotr.Rd | 11 +++++++++-- man/subset.Rd | 9 +++------ 11 files changed, 74 insertions(+), 31 deletions(-)
Title: Utility Functions for Developing Web Applications
Description: Parses http request data in application/json, multipart/form-data,
or application/x-www-form-urlencoded format. Includes example of hosting
and parsing html form data in R using either 'httpuv' or 'Rhttpd'.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between webutils versions 1.2.2 dated 2024-10-04 and 1.2.3 dated 2026-07-20
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 3 +++ man/demo_httpuv.Rd | 4 ++-- man/demo_rhttpd.Rd | 4 ++-- src/split.c | 2 +- 6 files changed, 17 insertions(+), 14 deletions(-)
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation ('ODE') models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
'VODE' and 'LSODA' are in the public domain. The information is available
in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [aut],
Alan Hindmarsh [ctb],
Arun Srinivasan [ctb],
Awad H. Al-Mohy [ctb],
Bill Denney [ctb] ,
Cleve Moler [ctb],
Daniel Kaschek [ctb],
David Cooley [ctb],
Drew Schmidt [ctb],
Ernst Hairer [ctb],
Gabriel St [...truncated...]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2 versions 5.1.3 dated 2026-07-19 and 5.1.4 dated 2026-07-20
DESCRIPTION | 6 +- MD5 | 16 ++--- NEWS.md | 62 ++++------------------ R/rxode2_md5.R | 2 inst/doc/rxode2-syntax.html | 26 ++++----- inst/include/rxode2parseVer.h | 4 - src/dlsoda.f | 118 +++++++++++++++++++++++------------------- src/dlsode.f | 68 +++++++++++++----------- src/init.c | 2 9 files changed, 145 insertions(+), 159 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] ,
MongoDB, Inc [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between mongolite versions 4.0.0 dated 2025-04-01 and 4.1.0 dated 2026-07-20
mongolite-4.0.0/mongolite/src/bson/bcon.c |only mongolite-4.0.0/mongolite/src/bson/bcon.h |only mongolite-4.0.0/mongolite/src/bson/bson-atomic.c |only mongolite-4.0.0/mongolite/src/bson/bson-atomic.h |only mongolite-4.0.0/mongolite/src/bson/bson-cmp.h |only mongolite-4.0.0/mongolite/src/bson/bson-compat.h |only mongolite-4.0.0/mongolite/src/bson/bson-config.h |only mongolite-4.0.0/mongolite/src/bson/bson-error.c |only mongolite-4.0.0/mongolite/src/bson/bson-error.h |only mongolite-4.0.0/mongolite/src/bson/bson-macros.h |only mongolite-4.0.0/mongolite/src/bson/bson-md5.c |only mongolite-4.0.0/mongolite/src/bson/bson-md5.h |only mongolite-4.0.0/mongolite/src/bson/bson-memory.c |only mongolite-4.0.0/mongolite/src/bson/bson-memory.h |only mongolite-4.0.0/mongolite/src/bson/bson-private.h |only mongolite-4.0.0/mongolite/src/bson/bson-version.h |only mongolite-4.0.0/mongolite/src/common/common-cmp-private.h |only mongolite-4.0.0/mongolite/src/mongoc/mcd-time.h |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-cursor-cmd-deprecated.c |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-cursor-find-cmd.c |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-cursor-find-opquery.c |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-cursor-legacy.c |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-index.c |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-index.h |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-libressl-private.h |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-libressl.c |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-matcher-op-private.h |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-matcher-op.c |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-matcher-private.h |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-matcher.c |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-matcher.h |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-stream-tls-libressl-private.h |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-stream-tls-libressl.c |only mongolite-4.0.0/mongolite/src/mongoc/mongoc-stream-tls-libressl.h |only mongolite-4.1.0/mongolite/DESCRIPTION | 10 mongolite-4.1.0/mongolite/MD5 | 810 +- mongolite-4.1.0/mongolite/NEWS | 4 mongolite-4.1.0/mongolite/man/ssl_options.Rd | 2 mongolite-4.1.0/mongolite/src/Makevars.in | 22 mongolite-4.1.0/mongolite/src/Makevars.win | 22 mongolite-4.1.0/mongolite/src/bson/bson-bcon.c |only mongolite-4.1.0/mongolite/src/bson/bson-bcon.h |only mongolite-4.1.0/mongolite/src/bson/bson-clock.c | 44 mongolite-4.1.0/mongolite/src/bson/bson-clock.h | 12 mongolite-4.1.0/mongolite/src/bson/bson-context-private.h | 21 mongolite-4.1.0/mongolite/src/bson/bson-context.c | 208 mongolite-4.1.0/mongolite/src/bson/bson-context.h | 14 mongolite-4.1.0/mongolite/src/bson/bson-decimal128.c | 219 mongolite-4.1.0/mongolite/src/bson/bson-decimal128.h | 20 mongolite-4.1.0/mongolite/src/bson/bson-endian.h | 133 mongolite-4.1.0/mongolite/src/bson/bson-error-private.h |only mongolite-4.1.0/mongolite/src/bson/bson-iso8601-private.h | 7 mongolite-4.1.0/mongolite/src/bson/bson-iso8601.c | 101 mongolite-4.1.0/mongolite/src/bson/bson-iter.c | 1054 +-- mongolite-4.1.0/mongolite/src/bson/bson-iter.h | 355 - mongolite-4.1.0/mongolite/src/bson/bson-json-private.h | 1 mongolite-4.1.0/mongolite/src/bson/bson-json.c | 1350 ++-- mongolite-4.1.0/mongolite/src/bson/bson-json.h | 44 mongolite-4.1.0/mongolite/src/bson/bson-keys.c | 24 mongolite-4.1.0/mongolite/src/bson/bson-keys.h | 6 mongolite-4.1.0/mongolite/src/bson/bson-oid.c | 171 mongolite-4.1.0/mongolite/src/bson/bson-oid.h | 77 mongolite-4.1.0/mongolite/src/bson/bson-reader.c | 206 mongolite-4.1.0/mongolite/src/bson/bson-reader.h | 50 mongolite-4.1.0/mongolite/src/bson/bson-string.c | 258 mongolite-4.1.0/mongolite/src/bson/bson-string.h | 85 mongolite-4.1.0/mongolite/src/bson/bson-timegm-private.h | 6 mongolite-4.1.0/mongolite/src/bson/bson-timegm.c | 308 mongolite-4.1.0/mongolite/src/bson/bson-types.h | 247 mongolite-4.1.0/mongolite/src/bson/bson-utf8.c | 61 mongolite-4.1.0/mongolite/src/bson/bson-utf8.h | 22 mongolite-4.1.0/mongolite/src/bson/bson-value.c | 114 mongolite-4.1.0/mongolite/src/bson/bson-value.h | 10 mongolite-4.1.0/mongolite/src/bson/bson-vector-private.h |only mongolite-4.1.0/mongolite/src/bson/bson-vector.c |only mongolite-4.1.0/mongolite/src/bson/bson-vector.h |only mongolite-4.1.0/mongolite/src/bson/bson-version-functions.c | 16 mongolite-4.1.0/mongolite/src/bson/bson-version-functions.h | 20 mongolite-4.1.0/mongolite/src/bson/bson-writer.c | 65 mongolite-4.1.0/mongolite/src/bson/bson-writer.h | 34 mongolite-4.1.0/mongolite/src/bson/bson.c | 2235 +++--- mongolite-4.1.0/mongolite/src/bson/bson.h | 686 +- mongolite-4.1.0/mongolite/src/bson/bson_t-private.h |only mongolite-4.1.0/mongolite/src/bson/bson_t.h |only mongolite-4.1.0/mongolite/src/bson/compat.h |only mongolite-4.1.0/mongolite/src/bson/config.h |only mongolite-4.1.0/mongolite/src/bson/error.c |only mongolite-4.1.0/mongolite/src/bson/error.h |only mongolite-4.1.0/mongolite/src/bson/macros.h |only mongolite-4.1.0/mongolite/src/bson/memory.c |only mongolite-4.1.0/mongolite/src/bson/memory.h |only mongolite-4.1.0/mongolite/src/bson/validate-private.h |only mongolite-4.1.0/mongolite/src/bson/validate.c |only mongolite-4.1.0/mongolite/src/bson/version.h |only mongolite-4.1.0/mongolite/src/collection.c | 26 mongolite-4.1.0/mongolite/src/common/common-atomic-private.h | 681 +- mongolite-4.1.0/mongolite/src/common/common-atomic.c | 150 mongolite-4.1.0/mongolite/src/common/common-b64-private.h | 16 mongolite-4.1.0/mongolite/src/common/common-b64.c | 144 mongolite-4.1.0/mongolite/src/common/common-bits-private.h | 2 mongolite-4.1.0/mongolite/src/common/common-bson-dsl-private.h | 1228 +-- mongolite-4.1.0/mongolite/src/common/common-json-private.h | 166 mongolite-4.1.0/mongolite/src/common/common-json.c | 581 - mongolite-4.1.0/mongolite/src/common/common-macros-private.h | 44 mongolite-4.1.0/mongolite/src/common/common-md5-private.h | 18 mongolite-4.1.0/mongolite/src/common/common-md5.c | 198 mongolite-4.1.0/mongolite/src/common/common-oid-private.h | 4 mongolite-4.1.0/mongolite/src/common/common-oid.c | 12 mongolite-4.1.0/mongolite/src/common/common-prelude.h | 6 mongolite-4.1.0/mongolite/src/common/common-string-private.h | 263 mongolite-4.1.0/mongolite/src/common/common-string.c | 264 mongolite-4.1.0/mongolite/src/common/common-thread-private.h | 148 mongolite-4.1.0/mongolite/src/common/common-thread.c | 34 mongolite-4.1.0/mongolite/src/common/common-utf8-private.h | 24 mongolite-4.1.0/mongolite/src/common/mlib |only mongolite-4.1.0/mongolite/src/jsonsl/jsonsl.c | 217 mongolite-4.1.0/mongolite/src/jsonsl/jsonsl.h | 58 mongolite-4.1.0/mongolite/src/kms/hexlify.c | 8 mongolite-4.1.0/mongolite/src/kms/kms_b64.c | 3 mongolite-4.1.0/mongolite/src/kms/kms_crypto.h | 1 mongolite-4.1.0/mongolite/src/kms/kms_crypto_apple.c | 3 mongolite-4.1.0/mongolite/src/kms/kms_crypto_libcrypto.c | 2 mongolite-4.1.0/mongolite/src/kms/kms_crypto_windows.c | 5 mongolite-4.1.0/mongolite/src/kms/kms_gcp_request.c | 6 mongolite-4.1.0/mongolite/src/kms/kms_kmip_reader_writer.c | 10 mongolite-4.1.0/mongolite/src/kms/kms_kmip_request.c | 9 mongolite-4.1.0/mongolite/src/kms/kms_kmip_response.c | 3 mongolite-4.1.0/mongolite/src/kms/kms_kmip_response_parser.c | 2 mongolite-4.1.0/mongolite/src/kms/kms_message/kms_kmip_request.h | 17 mongolite-4.1.0/mongolite/src/kms/kms_message/kms_kmip_response.h | 6 mongolite-4.1.0/mongolite/src/kms/kms_message/kms_response_parser.h | 3 mongolite-4.1.0/mongolite/src/kms/kms_message_private.h | 8 mongolite-4.1.0/mongolite/src/kms/kms_request.c | 6 mongolite-4.1.0/mongolite/src/kms/kms_request_str.c | 13 mongolite-4.1.0/mongolite/src/kms/kms_request_str.h | 13 mongolite-4.1.0/mongolite/src/kms/kms_response_parser.c | 1 mongolite-4.1.0/mongolite/src/kms/sort.c | 10 mongolite-4.1.0/mongolite/src/kms/sort.h | 2 mongolite-4.1.0/mongolite/src/mongoc/mcd-azure.c | 206 mongolite-4.1.0/mongolite/src/mongoc/mcd-azure.h | 66 mongolite-4.1.0/mongolite/src/mongoc/mcd-integer.h | 12 mongolite-4.1.0/mongolite/src/mongoc/mcd-nsinfo.c | 87 mongolite-4.1.0/mongolite/src/mongoc/mcd-nsinfo.h | 12 mongolite-4.1.0/mongolite/src/mongoc/mcd-rpc.c | 1436 ++-- mongolite-4.1.0/mongolite/src/mongoc/mcd-rpc.h | 286 mongolite-4.1.0/mongolite/src/mongoc/mongoc-aggregate-private.h | 24 mongolite-4.1.0/mongolite/src/mongoc/mongoc-aggregate.c | 191 mongolite-4.1.0/mongolite/src/mongoc/mongoc-apm-private.h | 105 mongolite-4.1.0/mongolite/src/mongoc/mongoc-apm.c | 459 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-apm.h | 441 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-array-private.h | 19 mongolite-4.1.0/mongolite/src/mongoc/mongoc-array.c | 52 mongolite-4.1.0/mongolite/src/mongoc/mongoc-async-cmd-private.h | 329 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-async-cmd.c | 379 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-async-private.h | 34 mongolite-4.1.0/mongolite/src/mongoc/mongoc-async.c | 138 mongolite-4.1.0/mongolite/src/mongoc/mongoc-buffer-private.h | 24 mongolite-4.1.0/mongolite/src/mongoc/mongoc-buffer.c | 199 mongolite-4.1.0/mongolite/src/mongoc/mongoc-bulk-operation-private.h | 17 mongolite-4.1.0/mongolite/src/mongoc/mongoc-bulk-operation.c | 772 +- mongolite-4.1.0/mongolite/src/mongoc/mongoc-bulk-operation.h | 195 mongolite-4.1.0/mongolite/src/mongoc/mongoc-bulkwrite.c | 1593 ++-- mongolite-4.1.0/mongolite/src/mongoc/mongoc-bulkwrite.h | 339 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-change-stream-private.h | 16 mongolite-4.1.0/mongolite/src/mongoc/mongoc-change-stream.c | 398 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-change-stream.h | 20 mongolite-4.1.0/mongolite/src/mongoc/mongoc-client-pool-private.h | 18 mongolite-4.1.0/mongolite/src/mongoc/mongoc-client-pool.c | 512 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-client-pool.h | 90 mongolite-4.1.0/mongolite/src/mongoc/mongoc-client-private.h | 155 mongolite-4.1.0/mongolite/src/mongoc/mongoc-client-session-private.h | 71 mongolite-4.1.0/mongolite/src/mongoc/mongoc-client-session.c | 1025 +-- mongolite-4.1.0/mongolite/src/mongoc/mongoc-client-session.h | 179 mongolite-4.1.0/mongolite/src/mongoc/mongoc-client-side-encryption-private.h | 41 mongolite-4.1.0/mongolite/src/mongoc/mongoc-client-side-encryption.c | 2659 ++++---- mongolite-4.1.0/mongolite/src/mongoc/mongoc-client-side-encryption.h | 539 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-client.c | 2183 +++--- mongolite-4.1.0/mongolite/src/mongoc/mongoc-client.h | 335 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster-aws-private.h | 51 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster-aws.c | 1044 +-- mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster-cyrus-private.h | 12 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster-cyrus.c | 98 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster-oidc-private.h |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster-oidc.c |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster-private.h | 219 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster-sasl-private.h | 12 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster-sasl.c | 61 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster-sspi-private.h | 12 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster-sspi.c | 157 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cluster.c | 3142 ++++----- mongolite-4.1.0/mongolite/src/mongoc/mongoc-cmd-private.h | 44 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cmd.c | 536 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-collection-private.h | 26 mongolite-4.1.0/mongolite/src/mongoc/mongoc-collection.c | 2929 +++----- mongolite-4.1.0/mongolite/src/mongoc/mongoc-collection.h | 503 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-compression-private.h | 32 mongolite-4.1.0/mongolite/src/mongoc/mongoc-compression.c | 166 mongolite-4.1.0/mongolite/src/mongoc/mongoc-config-private.h |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-config.h | 11 mongolite-4.1.0/mongolite/src/mongoc/mongoc-counters-private.h | 135 mongolite-4.1.0/mongolite/src/mongoc/mongoc-counters.c | 122 mongolite-4.1.0/mongolite/src/mongoc/mongoc-crypt-private.h | 146 mongolite-4.1.0/mongolite/src/mongoc/mongoc-crypt.c | 1540 ++-- mongolite-4.1.0/mongolite/src/mongoc/mongoc-crypto-cng-private.h | 88 mongolite-4.1.0/mongolite/src/mongoc/mongoc-crypto-cng.c | 296 mongolite-4.1.0/mongolite/src/mongoc/mongoc-crypto-common-crypto-private.h | 75 mongolite-4.1.0/mongolite/src/mongoc/mongoc-crypto-common-crypto.c | 138 mongolite-4.1.0/mongolite/src/mongoc/mongoc-crypto-openssl-private.h | 75 mongolite-4.1.0/mongolite/src/mongoc/mongoc-crypto-openssl.c | 179 mongolite-4.1.0/mongolite/src/mongoc/mongoc-crypto-private.h | 71 mongolite-4.1.0/mongolite/src/mongoc/mongoc-crypto.c | 50 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cursor-array.c | 67 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cursor-change-stream.c | 118 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cursor-cmd.c | 188 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cursor-find.c | 120 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cursor-private.h | 162 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cursor.c | 1407 +--- mongolite-4.1.0/mongolite/src/mongoc/mongoc-cursor.h | 117 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cyrus-private.h | 29 mongolite-4.1.0/mongolite/src/mongoc/mongoc-cyrus.c | 404 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-database-private.h | 44 mongolite-4.1.0/mongolite/src/mongoc/mongoc-database.c | 1025 +-- mongolite-4.1.0/mongolite/src/mongoc/mongoc-database.h | 225 mongolite-4.1.0/mongolite/src/mongoc/mongoc-deprioritized-servers-private.h | 12 mongolite-4.1.0/mongolite/src/mongoc/mongoc-deprioritized-servers.c | 31 mongolite-4.1.0/mongolite/src/mongoc/mongoc-errno-private.h | 6 mongolite-4.1.0/mongolite/src/mongoc/mongoc-error-private.h | 93 mongolite-4.1.0/mongolite/src/mongoc/mongoc-error.c | 251 mongolite-4.1.0/mongolite/src/mongoc/mongoc-error.h | 8 mongolite-4.1.0/mongolite/src/mongoc/mongoc-find-and-modify-private.h | 7 mongolite-4.1.0/mongolite/src/mongoc/mongoc-find-and-modify.c | 116 mongolite-4.1.0/mongolite/src/mongoc/mongoc-find-and-modify.h | 68 mongolite-4.1.0/mongolite/src/mongoc/mongoc-flags-private.h | 4 mongolite-4.1.0/mongolite/src/mongoc/mongoc-flags.c | 59 mongolite-4.1.0/mongolite/src/mongoc/mongoc-flags.h | 39 mongolite-4.1.0/mongolite/src/mongoc/mongoc-generation-map-private.h | 10 mongolite-4.1.0/mongolite/src/mongoc/mongoc-generation-map.c | 74 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-bucket-file-private.h | 13 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-bucket-file.c | 273 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-bucket-private.h | 4 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-bucket.c | 407 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-bucket.h | 122 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-file-list-private.h | 14 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-file-list.c | 81 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-file-list.h | 18 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-file-page-private.h | 31 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-file-page.c | 139 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-file-page.h | 8 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-file-private.h | 15 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-file.c | 823 +- mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-file.h | 104 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs-private.h | 10 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs.c | 323 mongolite-4.1.0/mongolite/src/mongoc/mongoc-gridfs.h | 77 mongolite-4.1.0/mongolite/src/mongoc/mongoc-handshake-compiler-private.h | 17 mongolite-4.1.0/mongolite/src/mongoc/mongoc-handshake-private.h | 39 mongolite-4.1.0/mongolite/src/mongoc/mongoc-handshake.c | 778 +- mongolite-4.1.0/mongolite/src/mongoc/mongoc-handshake.h | 8 mongolite-4.1.0/mongolite/src/mongoc/mongoc-host-list-private.h | 32 mongolite-4.1.0/mongolite/src/mongoc/mongoc-host-list.c | 282 mongolite-4.1.0/mongolite/src/mongoc/mongoc-http-private.h | 45 mongolite-4.1.0/mongolite/src/mongoc/mongoc-http.c | 284 mongolite-4.1.0/mongolite/src/mongoc/mongoc-init.c | 148 mongolite-4.1.0/mongolite/src/mongoc/mongoc-init.h | 12 mongolite-4.1.0/mongolite/src/mongoc/mongoc-interrupt-private.h | 10 mongolite-4.1.0/mongolite/src/mongoc/mongoc-interrupt.c | 185 mongolite-4.1.0/mongolite/src/mongoc/mongoc-iovec.h | 6 mongolite-4.1.0/mongolite/src/mongoc/mongoc-jitter-source-private.h |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-jitter-source.c |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-linux-distro-scanner-private.h | 20 mongolite-4.1.0/mongolite/src/mongoc/mongoc-linux-distro-scanner.c | 178 mongolite-4.1.0/mongolite/src/mongoc/mongoc-list-private.h | 10 mongolite-4.1.0/mongolite/src/mongoc/mongoc-list.c | 28 mongolite-4.1.0/mongolite/src/mongoc/mongoc-log-and-monitor-private.c | 45 mongolite-4.1.0/mongolite/src/mongoc/mongoc-log-and-monitor-private.h | 16 mongolite-4.1.0/mongolite/src/mongoc/mongoc-log-private.h | 26 mongolite-4.1.0/mongolite/src/mongoc/mongoc-log.c | 188 mongolite-4.1.0/mongolite/src/mongoc/mongoc-log.h | 48 mongolite-4.1.0/mongolite/src/mongoc/mongoc-macros.h | 6 mongolite-4.1.0/mongolite/src/mongoc/mongoc-memcmp-private.h | 6 mongolite-4.1.0/mongolite/src/mongoc/mongoc-memcmp.c | 2 mongolite-4.1.0/mongolite/src/mongoc/mongoc-ocsp-cache-private.h | 18 mongolite-4.1.0/mongolite/src/mongoc/mongoc-ocsp-cache.c | 147 mongolite-4.1.0/mongolite/src/mongoc/mongoc-oidc-cache-private.h |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-oidc-cache.c |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-oidc-callback-private.h |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-oidc-callback.c |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-oidc-callback.h |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-oidc-env-private.h |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-oidc-env.c |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-opcode.c | 18 mongolite-4.1.0/mongolite/src/mongoc/mongoc-openssl-private.h | 25 mongolite-4.1.0/mongolite/src/mongoc/mongoc-openssl.c | 704 +- mongolite-4.1.0/mongolite/src/mongoc/mongoc-optional.c | 16 mongolite-4.1.0/mongolite/src/mongoc/mongoc-optional.h | 24 mongolite-4.1.0/mongolite/src/mongoc/mongoc-opts-helpers-private.h | 79 mongolite-4.1.0/mongolite/src/mongoc/mongoc-opts-helpers.c | 287 mongolite-4.1.0/mongolite/src/mongoc/mongoc-opts-private.h | 7 mongolite-4.1.0/mongolite/src/mongoc/mongoc-opts.c | 372 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-queue-private.h | 21 mongolite-4.1.0/mongolite/src/mongoc/mongoc-queue.c | 44 mongolite-4.1.0/mongolite/src/mongoc/mongoc-rand-cng.c | 35 mongolite-4.1.0/mongolite/src/mongoc/mongoc-rand-common-crypto.c | 13 mongolite-4.1.0/mongolite/src/mongoc/mongoc-rand-openssl.c | 22 mongolite-4.1.0/mongolite/src/mongoc/mongoc-rand-private.h | 6 mongolite-4.1.0/mongolite/src/mongoc/mongoc-rand.h | 16 mongolite-4.1.0/mongolite/src/mongoc/mongoc-read-concern-private.h | 9 mongolite-4.1.0/mongolite/src/mongoc/mongoc-read-concern.c | 80 mongolite-4.1.0/mongolite/src/mongoc/mongoc-read-concern.h | 32 mongolite-4.1.0/mongolite/src/mongoc/mongoc-read-prefs-private.h | 35 mongolite-4.1.0/mongolite/src/mongoc/mongoc-read-prefs.c | 209 mongolite-4.1.0/mongolite/src/mongoc/mongoc-read-prefs.h | 70 mongolite-4.1.0/mongolite/src/mongoc/mongoc-retry-backoff-generator-private.h |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-retry-backoff-generator.c |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-retryable-cmd-private.h |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-retryable-cmd.c |only mongolite-4.1.0/mongolite/src/mongoc/mongoc-rpc-private.h | 18 mongolite-4.1.0/mongolite/src/mongoc/mongoc-rpc.c | 302 mongolite-4.1.0/mongolite/src/mongoc/mongoc-sasl-private.h | 24 mongolite-4.1.0/mongolite/src/mongoc/mongoc-sasl.c | 108 mongolite-4.1.0/mongolite/src/mongoc/mongoc-scram-private.h | 41 mongolite-4.1.0/mongolite/src/mongoc/mongoc-scram.c | 902 +- mongolite-4.1.0/mongolite/src/mongoc/mongoc-secure-channel-private.h | 45 mongolite-4.1.0/mongolite/src/mongoc/mongoc-secure-channel.c | 1151 ++- mongolite-4.1.0/mongolite/src/mongoc/mongoc-secure-transport-private.h | 23 mongolite-4.1.0/mongolite/src/mongoc/mongoc-secure-transport.c | 340 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-server-api-private.h | 2 mongolite-4.1.0/mongolite/src/mongoc/mongoc-server-api.c | 53 mongolite-4.1.0/mongolite/src/mongoc/mongoc-server-api.h | 46 mongolite-4.1.0/mongolite/src/mongoc/mongoc-server-description-private.h | 75 mongolite-4.1.0/mongolite/src/mongoc/mongoc-server-description.c | 812 +- mongolite-4.1.0/mongolite/src/mongoc/mongoc-server-description.h | 46 mongolite-4.1.0/mongolite/src/mongoc/mongoc-server-monitor-private.h | 23 mongolite-4.1.0/mongolite/src/mongoc/mongoc-server-monitor.c | 1099 +-- mongolite-4.1.0/mongolite/src/mongoc/mongoc-server-stream-private.h | 24 mongolite-4.1.0/mongolite/src/mongoc/mongoc-server-stream.c | 39 mongolite-4.1.0/mongolite/src/mongoc/mongoc-set-private.h | 48 mongolite-4.1.0/mongolite/src/mongoc/mongoc-set.c | 132 mongolite-4.1.0/mongolite/src/mongoc/mongoc-shared-private.h | 18 mongolite-4.1.0/mongolite/src/mongoc/mongoc-shared.c | 88 mongolite-4.1.0/mongolite/src/mongoc/mongoc-sleep.h | 15 mongolite-4.1.0/mongolite/src/mongoc/mongoc-socket-private.h | 4 mongolite-4.1.0/mongolite/src/mongoc/mongoc-socket.c | 692 +- mongolite-4.1.0/mongolite/src/mongoc/mongoc-socket.h | 77 mongolite-4.1.0/mongolite/src/mongoc/mongoc-ssl-private.h | 22 mongolite-4.1.0/mongolite/src/mongoc/mongoc-ssl.c | 172 mongolite-4.1.0/mongolite/src/mongoc/mongoc-ssl.h | 8 mongolite-4.1.0/mongolite/src/mongoc/mongoc-sspi-private.h | 34 mongolite-4.1.0/mongolite/src/mongoc/mongoc-sspi.c | 262 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-buffered.c | 132 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-buffered.h | 8 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-file.c | 144 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-file.h | 12 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-gridfs-download-private.h | 5 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-gridfs-download.c | 72 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-gridfs-upload-private.h | 3 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-gridfs-upload.c | 70 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-gridfs.c | 100 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-gridfs.h | 10 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-private.h | 23 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-socket.c | 166 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-socket.h | 8 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-openssl-bio-private.h | 20 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-openssl-bio.c | 179 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-openssl-private.h | 19 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-openssl.c | 465 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-openssl.h | 8 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-private.h | 32 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-channel-private.h | 47 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-channel.c | 830 +- mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-channel.h | 9 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-transport-private.h | 11 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-transport.c | 439 - mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls-secure-transport.h | 15 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls.c | 225 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream-tls.h | 30 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream.c | 227 mongolite-4.1.0/mongolite/src/mongoc/mongoc-stream.h | 95 mongolite-4.1.0/mongolite/src/mongoc/mongoc-structured-log-private.h | 176 mongolite-4.1.0/mongolite/src/mongoc/mongoc-structured-log.c | 762 +- mongolite-4.1.0/mongolite/src/mongoc/mongoc-structured-log.h | 90 mongolite-4.1.0/mongolite/src/mongoc/mongoc-thread-private.h | 34 mongolite-4.1.0/mongolite/src/mongoc/mongoc-timeout-private.h | 16 mongolite-4.1.0/mongolite/src/mongoc/mongoc-timeout.c | 41 mongolite-4.1.0/mongolite/src/mongoc/mongoc-topology-background-monitoring-private.h | 14 mongolite-4.1.0/mongolite/src/mongoc/mongoc-topology-background-monitoring.c | 201 mongolite-4.1.0/mongolite/src/mongoc/mongoc-topology-description-apm-private.h | 39 mongolite-4.1.0/mongolite/src/mongoc/mongoc-topology-description-apm.c | 158 mongolite-4.1.0/mongolite/src/mongoc/mongoc-topology-description-private.h | 138 mongolite-4.1.0/mongolite/src/mongoc/mongoc-topology-description.c | 1646 ++--- mongolite-4.1.0/mongolite/src/mongoc/mongoc-topology-description.h | 33 mongolite-4.1.0/mongolite/src/mongoc/mongoc-topology-private.h | 205 mongolite-4.1.0/mongolite/src/mongoc/mongoc-topology-scanner-private.h | 121 mongolite-4.1.0/mongolite/src/mongoc/mongoc-topology-scanner.c | 1447 ++-- mongolite-4.1.0/mongolite/src/mongoc/mongoc-topology.c | 1255 +-- mongolite-4.1.0/mongolite/src/mongoc/mongoc-trace-private.h | 188 mongolite-4.1.0/mongolite/src/mongoc/mongoc-ts-pool-private.h | 170 mongolite-4.1.0/mongolite/src/mongoc/mongoc-ts-pool.c | 189 mongolite-4.1.0/mongolite/src/mongoc/mongoc-uri-private.h | 50 mongolite-4.1.0/mongolite/src/mongoc/mongoc-uri.c | 3273 +++++----- mongolite-4.1.0/mongolite/src/mongoc/mongoc-uri.h | 276 mongolite-4.1.0/mongolite/src/mongoc/mongoc-util-private.h | 123 mongolite-4.1.0/mongolite/src/mongoc/mongoc-util.c | 770 +- mongolite-4.1.0/mongolite/src/mongoc/mongoc-version-functions.c | 15 mongolite-4.1.0/mongolite/src/mongoc/mongoc-version-functions.h | 24 mongolite-4.1.0/mongolite/src/mongoc/mongoc-version.h | 10 mongolite-4.1.0/mongolite/src/mongoc/mongoc-write-command-private.h | 191 mongolite-4.1.0/mongolite/src/mongoc/mongoc-write-command.c | 918 +- mongolite-4.1.0/mongolite/src/mongoc/mongoc-write-concern-private.h | 12 mongolite-4.1.0/mongolite/src/mongoc/mongoc-write-concern.c | 283 mongolite-4.1.0/mongolite/src/mongoc/mongoc-write-concern.h | 108 mongolite-4.1.0/mongolite/src/mongoc/mongoc.h | 24 mongolite-4.1.0/mongolite/src/mongoc/service-gcp.c | 213 mongolite-4.1.0/mongolite/src/mongoc/service-gcp.h | 62 mongolite-4.1.0/mongolite/src/mongoc/uthash.h | 5 mongolite-4.1.0/mongolite/src/mongoc/utlist.h | 2 mongolite-4.1.0/mongolite/src/osx/Makevars | 28 mongolite-4.1.0/mongolite/tests/testthat/specifications |only 418 files changed, 39231 insertions(+), 37277 deletions(-)
Title: An Automatic Suite for Estimation of Various Effect Size
Measures
Description: Automatically estimate 14 effect size measures from a well-formatted dataset, including Cohen's d, Hedges' g, mean difference, odds ratio, risk ratio, incidence rate ratio, risk difference, number needed to treat, Pearson correlation, Fisher's z, Cronbach's alpha, intraclass correlation coefficient, and single-group proportion. Provides a two-tier quality-flag diagnostic system for input validation and post-computation plausibility checks, missing-data guidance that tells users which columns would unlock additional estimators, post-hoc correction for attenuation due to measurement error, and standalone psychometric utilities (standard error of measurement, smallest detectable change, change-score reliability). Various other functions can help, for example, removing dependency between several effect sizes, or identifying differences between two datasets.
This package is mainly designed to assist in conducting a systematic review with a meta-analysis but can be useful to any researcher i [...truncated...]
Author: Corentin J. Gosling [aut, cre],
Samuele Cortese [aut],
Marco Solmi [aut],
Belen Haza [aut],
Eduard Vieta [aut],
Richard Delorme [aut],
Paolo Fusar-Poli [aut],
Joaquim Radua [aut]
Maintainer: Corentin J. Gosling <corentin.gosling@parisnanterre.fr>
Diff between metaConvert versions 1.0.3 dated 2025-04-11 and 2.0.0 dated 2026-07-20
metaConvert-1.0.3/metaConvert/tests/testthat/test-agg.R |only metaConvert-2.0.0/metaConvert/DESCRIPTION | 17 metaConvert-2.0.0/metaConvert/MD5 | 283 +- metaConvert-2.0.0/metaConvert/NAMESPACE | 212 +- metaConvert-2.0.0/metaConvert/NEWS.md | 12 metaConvert-2.0.0/metaConvert/R/data.R | 21 metaConvert-2.0.0/metaConvert/R/data_extraction.R | 178 + metaConvert-2.0.0/metaConvert/R/es_disattenuate.R |only metaConvert-2.0.0/metaConvert/R/es_from_2x2.R | 189 - metaConvert-2.0.0/metaConvert/R/es_from_ALPHA.R |only metaConvert-2.0.0/metaConvert/R/es_from_ANCOVA_MD.R | 101 metaConvert-2.0.0/metaConvert/R/es_from_ANCOVA_means.R | 138 - metaConvert-2.0.0/metaConvert/R/es_from_ANCOVA_statistics.R | 83 metaConvert-2.0.0/metaConvert/R/es_from_ANOVA_means.R | 171 - metaConvert-2.0.0/metaConvert/R/es_from_ANOVA_med_range_quart.R | 75 metaConvert-2.0.0/metaConvert/R/es_from_ANOVA_statistics.R | 90 metaConvert-2.0.0/metaConvert/R/es_from_ETASQ.R | 113 - metaConvert-2.0.0/metaConvert/R/es_from_ICC.R |only metaConvert-2.0.0/metaConvert/R/es_from_PAIRED_MC.R | 420 ++- metaConvert-2.0.0/metaConvert/R/es_from_PAIRED_MEANS.R | 235 +- metaConvert-2.0.0/metaConvert/R/es_from_PAIRED_SINGLE_GROUP.R |only metaConvert-2.0.0/metaConvert/R/es_from_PAIRED_STATISTICS.R | 177 + metaConvert-2.0.0/metaConvert/R/es_from_PHI_CHISQ.R | 177 - 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Title: Exponential-Family Models for Signed Networks
Description: Extends the 'ergm.multi' packages from the Statnet suite to fit (temporal) exponential-family random graph models for signed networks. The framework models positive and negative ties as interdependent, which allows estimation and testing of structural balance theory. The package also includes options for descriptive summaries, visualization, and simulation of signed networks. See Krivitsky, Koehly, and Marcum (2020) <doi:10.1007/s11336-020-09720-7> and Fritz, C., Mehrl, M., Thurner, P. W., & Kauermann, G. (2025) <doi:10.1017/pan.2024.21>.
Author: Marc Schalberger [cre],
Cornelius Fritz [aut],
Pavel Krivitsky [ctb]
Maintainer: Marc Schalberger <m.schalberger@fu-berlin.de>
Diff between ergm.sign versions 0.1.2 dated 2026-02-03 and 0.1.3 dated 2026-07-20
ergm.sign-0.1.2/ergm.sign/R/GoF.R |only ergm.sign-0.1.2/ergm.sign/man/GoF.Rd |only ergm.sign-0.1.2/ergm.sign/man/TNTFixL-ergmProposal.Rd |only ergm.sign-0.1.2/ergm.sign/man/fixL-ergmConstraint.Rd |only ergm.sign-0.1.2/ergm.sign/man/randomtoggleFixL-ergmProposal.Rd |only ergm.sign-0.1.3/ergm.sign/DESCRIPTION | 8 ergm.sign-0.1.3/ergm.sign/MD5 | 102 - ergm.sign-0.1.3/ergm.sign/NAMESPACE | 12 ergm.sign-0.1.3/ergm.sign/R/InitErgmConstraint.R | 16 ergm.sign-0.1.3/ergm.sign/R/InitErgmProposal.R | 74 - ergm.sign-0.1.3/ergm.sign/R/InitErgmTerm.sign.R | 614 ++++++---- ergm.sign-0.1.3/ergm.sign/R/Signed.R |only ergm.sign-0.1.3/ergm.sign/R/UnLayer.R | 62 - ergm.sign-0.1.3/ergm.sign/R/ergm.sign-package.R | 1 ergm.sign-0.1.3/ergm.sign/R/ergm.sign.R |only ergm.sign-0.1.3/ergm.sign/R/gof_sign.R |only ergm.sign-0.1.3/ergm.sign/R/mple_sign.R | 87 - ergm.sign-0.1.3/ergm.sign/R/network.sign.R | 117 + ergm.sign-0.1.3/ergm.sign/R/networks.sign.R | 10 ergm.sign-0.1.3/ergm.sign/R/path_sampler.R | 47 ergm.sign-0.1.3/ergm.sign/R/plot.R | 86 - ergm.sign-0.1.3/ergm.sign/R/pool.R |only ergm.sign-0.1.3/ergm.sign/R/simulate.sign.R |only ergm.sign-0.1.3/ergm.sign/R/summary.R | 205 ++- ergm.sign-0.1.3/ergm.sign/build/partial.rdb |binary ergm.sign-0.1.3/ergm.sign/build/stage23.rdb |binary ergm.sign-0.1.3/ergm.sign/build/vignette.rds |binary ergm.sign-0.1.3/ergm.sign/data/rebels.rda |binary ergm.sign-0.1.3/ergm.sign/data/rebels_pooled.rda |binary ergm.sign-0.1.3/ergm.sign/data/sponsor.rda |binary ergm.sign-0.1.3/ergm.sign/data/tribes.rda |binary ergm.sign-0.1.3/ergm.sign/inst/doc/tribes.R | 10 ergm.sign-0.1.3/ergm.sign/inst/doc/tribes.Rmd | 14 ergm.sign-0.1.3/ergm.sign/inst/doc/tribes.html | 74 - ergm.sign-0.1.3/ergm.sign/man/CE-ergmTerm-2fa91e3f.Rd |only ergm.sign-0.1.3/ergm.sign/man/CF-ergmTerm-422e43b0.Rd |only ergm.sign-0.1.3/ergm.sign/man/Signed.Rd |only ergm.sign-0.1.3/ergm.sign/man/UnLayer.Rd | 13 ergm.sign-0.1.3/ergm.sign/man/dse-ergmTerm-be6c381c.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/dsf-ergmTerm-f7c2724a.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/ergm.sign.Rd | 35 ergm.sign-0.1.3/ergm.sign/man/ese-ergmTerm-8531b67b.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/esf-ergmTerm-c450f580.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/gof.Rd |only ergm.sign-0.1.3/ergm.sign/man/gwdse-ergmTerm-215cdf5b.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/gwdsf-ergmTerm-195a4cbb.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/gwese-ergmTerm-0e3a2475.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/gwesf-ergmTerm-81ee6379.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/gwnse-ergmTerm-54855a5d.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/gwnsf-ergmTerm-4a4f9b9d.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/nse-ergmTerm-d58096d7.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/nsf-ergmTerm-9334a58d.Rd | 2 ergm.sign-0.1.3/ergm.sign/man/plot.dynamic.sign.Rd | 18 ergm.sign-0.1.3/ergm.sign/man/plot.static.sign.Rd | 13 ergm.sign-0.1.3/ergm.sign/man/pool.sign.Rd |only ergm.sign-0.1.3/ergm.sign/man/summary.static.sign.Rd | 4 ergm.sign-0.1.3/ergm.sign/tests/testthat/test-Signed.R |only ergm.sign-0.1.3/ergm.sign/tests/testthat/test-delayed.R | 46 ergm.sign-0.1.3/ergm.sign/tests/testthat/test-network_sign.R |only ergm.sign-0.1.3/ergm.sign/tests/testthat/test-pooled.R |only ergm.sign-0.1.3/ergm.sign/vignettes/tribes.Rmd | 14 61 files changed, 1053 insertions(+), 653 deletions(-)
Title: Markov Chain Monte Carlo Small Area Estimation
Description: Fit multi-level models with possibly correlated
random effects using Markov Chain Monte Carlo simulation.
Such models allow smoothing over space and time and are useful in,
for example, small area estimation.
Author: Harm Jan Boonstra [aut, cre],
Grzegorz Baltissen [ctb]
Maintainer: Harm Jan Boonstra <hjboonstra@gmail.com>
Diff between mcmcsae versions 0.8.0 dated 2025-09-12 and 0.8.1 dated 2026-07-20
mcmcsae-0.8.0/mcmcsae/man/negbin_control.Rd |only mcmcsae-0.8.1/mcmcsae/DESCRIPTION | 26 mcmcsae-0.8.1/mcmcsae/MD5 | 214 +- mcmcsae-0.8.1/mcmcsae/NAMESPACE | 16 mcmcsae-0.8.1/mcmcsae/NEWS | 20 mcmcsae-0.8.1/mcmcsae/R/GMRF_extension.R | 28 mcmcsae-0.8.1/mcmcsae/R/MCMCsim.R | 114 + mcmcsae-0.8.1/mcmcsae/R/MH.R | 16 mcmcsae-0.8.1/mcmcsae/R/MatrixUtils.R | 22 mcmcsae-0.8.1/mcmcsae/R/RcppExports.R | 20 mcmcsae-0.8.1/mcmcsae/R/TMVN_sampler.R | 46 mcmcsae-0.8.1/mcmcsae/R/aux_closures.R | 27 mcmcsae-0.8.1/mcmcsae/R/cMVN_sampler.R | 46 mcmcsae-0.8.1/mcmcsae/R/cholesky.R | 8 mcmcsae-0.8.1/mcmcsae/R/conjugate_gradients.R | 29 mcmcsae-0.8.1/mcmcsae/R/f_binomial.R | 331 +++- mcmcsae-0.8.1/mcmcsae/R/f_gamma.R | 472 +++--- mcmcsae-0.8.1/mcmcsae/R/f_gaussian.R | 630 ++++++-- mcmcsae-0.8.1/mcmcsae/R/f_multi.R |only mcmcsae-0.8.1/mcmcsae/R/f_multinomial.R | 256 ++- mcmcsae-0.8.1/mcmcsae/R/f_negbinomial.R | 336 +++- mcmcsae-0.8.1/mcmcsae/R/f_poisson.R | 123 + mcmcsae-0.8.1/mcmcsae/R/f_student_t.R |only mcmcsae-0.8.1/mcmcsae/R/family.R |only mcmcsae-0.8.1/mcmcsae/R/formulas.R | 75 mcmcsae-0.8.1/mcmcsae/R/kronprod.R | 192 -- mcmcsae-0.8.1/mcmcsae/R/mc_bart.R | 163 +- mcmcsae-0.8.1/mcmcsae/R/mc_block.R | 279 ++- mcmcsae-0.8.1/mcmcsae/R/mc_gen.R | 344 ++-- mcmcsae-0.8.1/mcmcsae/R/mc_gl.R | 16 mcmcsae-0.8.1/mcmcsae/R/mc_mec.R | 273 +-- mcmcsae-0.8.1/mcmcsae/R/mc_offset.R | 32 mcmcsae-0.8.1/mcmcsae/R/mc_reg.R | 353 ++-- mcmcsae-0.8.1/mcmcsae/R/mc_s.R | 67 mcmcsae-0.8.1/mcmcsae/R/mc_vfac.R | 68 mcmcsae-0.8.1/mcmcsae/R/mc_vreg.R | 41 mcmcsae-0.8.1/mcmcsae/R/mcmcsae.R | 28 mcmcsae-0.8.1/mcmcsae/R/model_eval.R | 107 + mcmcsae-0.8.1/mcmcsae/R/modelmatrix.R | 44 mcmcsae-0.8.1/mcmcsae/R/models.R | 56 mcmcsae-0.8.1/mcmcsae/R/prediction.R | 66 mcmcsae-0.8.1/mcmcsae/R/priors.R | 9 mcmcsae-0.8.1/mcmcsae/R/random.R | 12 mcmcsae-0.8.1/mcmcsae/R/samplers.R | 768 +++------- mcmcsae-0.8.1/mcmcsae/R/sparse_template.R | 22 mcmcsae-0.8.1/mcmcsae/R/tabMatrix.R | 7 mcmcsae-0.8.1/mcmcsae/R/utils.R | 58 mcmcsae-0.8.1/mcmcsae/build/vignette.rds |binary mcmcsae-0.8.1/mcmcsae/inst/doc/area_level.html | 80 - mcmcsae-0.8.1/mcmcsae/inst/doc/linear_weighting.R | 7 mcmcsae-0.8.1/mcmcsae/inst/doc/linear_weighting.Rmd | 9 mcmcsae-0.8.1/mcmcsae/inst/doc/linear_weighting.html | 106 - mcmcsae-0.8.1/mcmcsae/inst/doc/unit_level.html | 344 ++-- mcmcsae-0.8.1/mcmcsae/man/GMRF_structure.Rd | 9 mcmcsae-0.8.1/mcmcsae/man/MCMC-object-conversion.Rd | 3 mcmcsae-0.8.1/mcmcsae/man/MCMCsim.Rd | 4 mcmcsae-0.8.1/mcmcsae/man/as.data.frame.dc_summary.Rd |only mcmcsae-0.8.1/mcmcsae/man/as.data.frame.mcdraws_summary.Rd |only mcmcsae-0.8.1/mcmcsae/man/bayesR2.Rd |only mcmcsae-0.8.1/mcmcsae/man/binomial_control.Rd |only mcmcsae-0.8.1/mcmcsae/man/brt.Rd | 15 mcmcsae-0.8.1/mcmcsae/man/cMVN_control.Rd |only mcmcsae-0.8.1/mcmcsae/man/correlation.Rd | 2 mcmcsae-0.8.1/mcmcsae/man/create_block_cMVN_sampler.Rd | 8 mcmcsae-0.8.1/mcmcsae/man/create_cMVN_sampler.Rd | 3 mcmcsae-0.8.1/mcmcsae/man/create_sampler.Rd | 19 mcmcsae-0.8.1/mcmcsae/man/f_binomial.Rd | 66 mcmcsae-0.8.1/mcmcsae/man/f_gamma.Rd | 31 mcmcsae-0.8.1/mcmcsae/man/f_gaussian.Rd | 69 mcmcsae-0.8.1/mcmcsae/man/f_gaussian_gamma.Rd | 11 mcmcsae-0.8.1/mcmcsae/man/f_multi.Rd |only mcmcsae-0.8.1/mcmcsae/man/f_multinomial.Rd | 33 mcmcsae-0.8.1/mcmcsae/man/f_negbinomial.Rd | 48 mcmcsae-0.8.1/mcmcsae/man/f_poisson.Rd | 28 mcmcsae-0.8.1/mcmcsae/man/f_student_t.Rd |only mcmcsae-0.8.1/mcmcsae/man/gaussian_control.Rd |only mcmcsae-0.8.1/mcmcsae/man/gen.Rd | 2 mcmcsae-0.8.1/mcmcsae/man/mec.Rd | 18 mcmcsae-0.8.1/mcmcsae/man/multinomial_control.Rd |only mcmcsae-0.8.1/mcmcsae/man/negbinomial_control.Rd |only mcmcsae-0.8.1/mcmcsae/man/poisson_control.Rd | 13 mcmcsae-0.8.1/mcmcsae/man/reexports.Rd |only mcmcsae-0.8.1/mcmcsae/man/reg.Rd | 19 mcmcsae-0.8.1/mcmcsae/man/sampler_control.Rd | 36 mcmcsae-0.8.1/mcmcsae/man/setup_CG_sampler.Rd | 4 mcmcsae-0.8.1/mcmcsae/man/student_t_control.Rd |only mcmcsae-0.8.1/mcmcsae/man/summary.dc.Rd | 2 mcmcsae-0.8.1/mcmcsae/man/summary.mcdraws.Rd | 2 mcmcsae-0.8.1/mcmcsae/src/RcppExports.cpp | 77 - mcmcsae-0.8.1/mcmcsae/src/TN.cpp | 7 mcmcsae-0.8.1/mcmcsae/src/mcmcsae_init.c | 9 mcmcsae-0.8.1/mcmcsae/src/random.cpp | 126 + mcmcsae-0.8.1/mcmcsae/src/speed_ups.cpp | 240 ++- mcmcsae-0.8.1/mcmcsae/src/tabMatrix.cpp | 34 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_Cholesky.R | 10 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_FH.R | 8 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_Poisson.R | 15 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_TMVN.R | 9 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_bart.R | 4 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_binreg.R | 31 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_cMVNsampler.R | 19 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_checks.R | 109 + mcmcsae-0.8.1/mcmcsae/tests/testthat/test_conjugate_gradient.R | 2 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_gammareg.R | 29 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_gen.R | 72 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_grouplevel.R | 52 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_linalg.R | 15 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_linreg.R | 10 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_mat_sum.R | 15 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_mec.R | 28 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_modelmatrix.R | 10 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_multinom.R | 4 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_sim.R | 8 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_spline.R | 55 mcmcsae-0.8.1/mcmcsae/tests/testthat/test_varmod.R | 66 mcmcsae-0.8.1/mcmcsae/vignettes/linear_weighting.Rmd | 9 116 files changed, 4988 insertions(+), 2936 deletions(-)
Title: Partial Linear Single Index Models for Environmental Mixture
Analysis
Description: Collection of ancillary functions and utilities for Partial Linear Single Index Models for Environmental mixture analyses, which currently provides functions for scalar, binary and count outcomes. The outputs of these functions include the single index function, single index coefficients, partial linear coefficients, mixture overall effect, exposure main and interaction effects, and differences of quartile effects. In the future, we will add functions for ordinal, survival, and longitudinal outcomes, as well as models for time-dependent exposures. See Wang et al (2020) <doi:10.1186/s12940-020-00644-4> for an overview.
Author: Yuyan Wang [aut, cre] ,
Mengling Liu [aut, ctb],
Myeonggyun Lee [ctb]
Maintainer: Yuyan Wang <yuyan.wang@nyumc.org>
Diff between EPLSIM versions 1.0.0 dated 2026-07-16 and 1.0.1 dated 2026-07-20
DESCRIPTION | 11 ++--- MD5 | 68 ++++++++++++++++----------------- NEWS.md | 6 ++ R/confounder.trans.R | 2 R/e.interaction.plot.R | 14 +++--- R/e.main.plot.R | 10 ++-- R/interquartile.quartile.plot.R | 8 +-- R/mixture.overall.plot.R | 8 +-- R/nhanes.new.R | 2 R/plsi.log.auto.R | 31 ++++++--------- R/plsi.logistic.auto.R | 23 +++++------ R/plsi.lr.auto.R | 2 R/plsi.lr.v1.R | 2 R/plsi.lr.v2.R | 2 R/si.coef.plot.R | 6 +- R/si.fun.plot.R | 8 +-- README.md | 4 + inst/doc/my-vignette.Rmd | 10 ++-- inst/doc/my-vignette.html | 28 ++++++------- man/confounder.trans.Rd | 6 +- man/e.interaction.plot.Rd | 14 +++--- man/e.main.plot.Rd | 12 ++--- man/interquartile.quartile.plot.Rd | 10 ++-- man/mixture.overall.plot.Rd | 10 ++-- man/nhanes.new.Rd | 2 man/plsi.log.auto.Rd | 31 ++++++--------- man/plsi.logistic.auto.Rd | 23 +++++------ man/plsi.lr.auto.Rd | 2 man/plsi.lr.v1.Rd | 4 - man/plsi.lr.v2.Rd | 4 - man/si.coef.plot.Rd | 8 +-- man/si.fun.plot.Rd | 10 ++-- vignettes/example.confounder.trans.R | 2 vignettes/example.e.interaction.plot.R | 4 - vignettes/my-vignette.Rmd | 10 ++-- 35 files changed, 197 insertions(+), 200 deletions(-)
Title: Access and Analyze eBird Status and Trends Data Products
Description: Tools for accessing and analyzing eBird Status and
Trends Data Products
(<https://science.ebird.org/en/status-and-trends>). eBird
(<https://ebird.org/home>) is a global database of bird observations
collected by member of the public. eBird Status and Trends uses these
data to model global bird distributions, abundances, and population trends
at a high spatial and temporal resolution.
Author: Matthew Strimas-Mackey [aut, cre] ,
Shawn Ligocki [aut],
Tom Auer [aut] ,
Daniel Fink [aut] ,
Cornell Lab of Ornithology [cph]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between ebirdst versions 3.2023.1 dated 2025-10-19 and 4.2023.0 dated 2026-07-20
ebirdst-3.2023.1/ebirdst/build |only ebirdst-3.2023.1/ebirdst/inst/doc |only ebirdst-3.2023.1/ebirdst/vignettes |only ebirdst-4.2023.0/ebirdst/DESCRIPTION | 13 ebirdst-4.2023.0/ebirdst/MD5 | 102 - ebirdst-4.2023.0/ebirdst/NAMESPACE | 5 ebirdst-4.2023.0/ebirdst/NEWS.md | 10 ebirdst-4.2023.0/ebirdst/R/access-key.R | 18 ebirdst-4.2023.0/ebirdst/R/download.R | 264 +-- ebirdst-4.2023.0/ebirdst/R/ebirdst-defunct.R | 70 ebirdst-4.2023.0/ebirdst/R/ebirdst-deprecated.R | 20 ebirdst-4.2023.0/ebirdst/R/ebirdst-palettes.R | 30 ebirdst-4.2023.0/ebirdst/R/load.R | 822 +++++++--- ebirdst-4.2023.0/ebirdst/R/manage.R |only ebirdst-4.2023.0/ebirdst/R/sample.R | 386 +++- ebirdst-4.2023.0/ebirdst/R/trends.R | 128 + ebirdst-4.2023.0/ebirdst/R/utils.R | 27 ebirdst-4.2023.0/ebirdst/R/zzz.R | 17 ebirdst-4.2023.0/ebirdst/man/ebirdst-package.Rd | 1 ebirdst-4.2023.0/ebirdst/man/ebirdst_data_inventory.Rd |only ebirdst-4.2023.0/ebirdst/man/ebirdst_delete.Rd |only ebirdst-4.2023.0/ebirdst/man/ebirdst_download_data_coverage.Rd | 6 ebirdst-4.2023.0/ebirdst/man/ebirdst_download_status.Rd | 6 ebirdst-4.2023.0/ebirdst/man/ebirdst_download_trends.Rd | 6 ebirdst-4.2023.0/ebirdst/man/ebirdst_regional_stats.Rd |only ebirdst-4.2023.0/ebirdst/man/figures/README-quick_start-1.png |binary ebirdst-4.2023.0/ebirdst/man/grid_sample.Rd | 12 ebirdst-4.2023.0/ebirdst/man/load_config.Rd | 14 ebirdst-4.2023.0/ebirdst/man/load_data_coverage.Rd | 20 ebirdst-4.2023.0/ebirdst/man/load_fac_map_parameters.Rd | 14 ebirdst-4.2023.0/ebirdst/man/load_pi.Rd | 20 ebirdst-4.2023.0/ebirdst/man/load_ppm.Rd | 15 ebirdst-4.2023.0/ebirdst/man/load_ranges.Rd | 11 ebirdst-4.2023.0/ebirdst/man/load_raster.Rd | 17 ebirdst-4.2023.0/ebirdst/man/load_regional_stats.Rd | 23 ebirdst-4.2023.0/ebirdst/man/load_trends.Rd | 21 ebirdst-4.2023.0/ebirdst/man/rasterize_trends.Rd | 4 ebirdst-4.2023.0/ebirdst/man/vectorize_trends.Rd | 2 ebirdst-4.2023.0/ebirdst/tests/testthat/setup.R | 8 ebirdst-4.2023.0/ebirdst/tests/testthat/test_download.R | 48 ebirdst-4.2023.0/ebirdst/tests/testthat/test_loading.R | 82 ebirdst-4.2023.0/ebirdst/tests/testthat/test_manage.R |only ebirdst-4.2023.0/ebirdst/tests/testthat/test_palette.R | 20 ebirdst-4.2023.0/ebirdst/tests/testthat/test_ranges.R | 54 ebirdst-4.2023.0/ebirdst/tests/testthat/test_rasters.R | 45 ebirdst-4.2023.0/ebirdst/tests/testthat/test_sample.R |only ebirdst-4.2023.0/ebirdst/tests/testthat/test_trends.R | 108 + ebirdst-4.2023.0/ebirdst/tests/testthat/test_utils.R | 46 48 files changed, 1809 insertions(+), 706 deletions(-)
Title: Render Tables, Listings, and Figures for Clinical Submissions
Description: Render clinical submission tables, listings, and figures to
'RTF', 'LaTeX', 'Typst', 'HTML', 'PDF', and 'DOCX' from pre-summarised
data frames, with no external 'Java' or 'SAS' dependency. Features include
decimal alignment via font metrics, multi-level column headers with
passthrough leaves, predicate-targeted cell styling, footnotes,
group-aware pagination, and figures that wrap a plot or image in the
same page chrome as a table. Built for Clinical Data Interchange Standards
Consortium (CDISC) Analysis Data Model (ADaM) workflows and
regulatory submissions to agencies such as the Food and Drug
Administration (FDA), European Medicines Agency (EMA), and
Pharmaceuticals and Medical Devices Agency (PMDA).
Author: Vignesh Thanikachalam [aut, cre, cph]
Maintainer: Vignesh Thanikachalam <about.vignesh@gmail.com>
Diff between tabular versions 0.2.0 dated 2026-07-06 and 0.3.1 dated 2026-07-20
DESCRIPTION | 15 MD5 | 268 ++++---- NAMESPACE | 3 NEWS.md | 66 ++ R/aaa_class.R | 188 +++-- R/align.R | 69 -- R/as_grid.R | 401 +++++++++--- R/backend_docx.R | 237 +++---- R/backend_html.R | 202 ++---- R/backend_latex.R | 306 ++++----- R/backend_md.R | 49 - R/backend_pdf.R | 441 +++++++++++--- R/backend_pdf_common.R |only R/backend_rtf.R | 180 +---- R/backend_typst.R |only R/backend_typst_pdf.R |only R/brdr.R | 3 R/chrome_style.R | 36 + R/col_spec.R | 338 +--------- R/cols.R | 216 +++--- R/data.R | 31 R/emit.R | 128 +++- R/engine_borders.R | 96 +-- R/engine_decimal.R | 75 +- R/engine_footnotes.R | 2 R/engine_format.R | 18 R/engine_group_display.R | 289 ++++----- R/engine_headers.R | 2 R/engine_paginate.R | 194 +++--- R/engine_style.R | 35 + R/engine_subgroup_split.R | 93 +- R/figure.R | 6 R/font_metrics.R | 203 +++++- R/fonts.R | 64 +- R/group_rows.R |only R/headers.R | 6 R/inline_format.R | 2 R/locations.R | 4 R/page_chrome.R | 30 R/paginate.R | 171 ++--- R/pivot_across.R | 4 R/preset.R | 183 +++-- R/preset_minimal.R | 4 R/print.R | 42 - R/sanity.R | 33 - R/sort_rows.R | 2 R/subgroup.R | 27 R/tabular.R | 11 R/theme.R | 2 README.md | 37 - inst/COPYRIGHTS |only inst/doc/tabular.R | 11 inst/doc/tabular.html | 21 inst/doc/tabular.qmd | 16 inst/tex |only man/as_grid.Rd | 16 man/brdr.Rd | 3 man/cdisc_eff_estimates.Rd | 2 man/cdisc_eff_resp.Rd | 15 man/cdisc_saf_demo.Rd | 4 man/cdisc_saf_subgroup.Rd | 4 man/cdisc_saf_vital.Rd | 6 man/cells.Rd | 2 man/check_fonts.Rd | 5 man/check_latex.Rd | 93 ++ man/check_typst.Rd |only man/col_spec.Rd | 252 +------- man/cols.Rd | 92 +- man/cols_apply.Rd | 5 man/emit.Rd | 47 + man/group_rows.Rd |only man/headers.Rd | 6 man/md.Rd | 2 man/paginate.Rd | 100 +-- man/pivot_across.Rd | 4 man/preset.Rd | 39 - man/preset_minimal.Rd | 2 man/print.tabular_spec.Rd | 45 - man/sort_rows.Rd | 2 man/subgroup.Rd | 27 man/tabular-package.Rd | 2 man/tabular.Rd | 11 man/tabular_classes.Rd | 4 man/tabular_predicates.Rd | 6 tests/testthat/_snaps/backend_docx/saf_demo_golden.xml | 2 tests/testthat/_snaps/backend_html/saf_demo_golden.html | 106 +-- tests/testthat/_snaps/backend_latex/banded_multirange.tex | 2 tests/testthat/_snaps/backend_latex/saf_demo_golden.tex | 6 tests/testthat/_snaps/backend_pdf.md |only tests/testthat/_snaps/backend_rtf/saf_demo_golden.rtf | 2 tests/testthat/_snaps/backend_typst.md |only tests/testthat/_snaps/backend_typst_pdf.md |only tests/testthat/_snaps/cols.md |only tests/testthat/_snaps/emit.md | 13 tests/testthat/_snaps/group_rows.md |only tests/testthat/_snaps/paginate.md | 18 tests/testthat/setup-device-metrics.R |only tests/testthat/test-aaa_class.R | 120 +++ tests/testthat/test-align.R | 89 -- tests/testthat/test-as_grid.R | 128 +++- tests/testthat/test-backend_docx.R | 165 +++-- tests/testthat/test-backend_html.R | 143 +++- tests/testthat/test-backend_latex.R | 120 ++- tests/testthat/test-backend_md.R | 82 +- tests/testthat/test-backend_pdf.R | 280 ++++++++ tests/testthat/test-backend_rtf.R | 109 ++- tests/testthat/test-backend_typst.R |only tests/testthat/test-backend_typst_pdf.R |only tests/testthat/test-borders.R | 40 - tests/testthat/test-cascade.R | 8 tests/testthat/test-col_spec.R | 57 - tests/testthat/test-cols.R | 168 +++-- tests/testthat/test-emit.R | 124 +++ tests/testthat/test-empty-state.R | 11 tests/testthat/test-engine_borders-table-layers.R | 5 tests/testthat/test-engine_decimal.R | 3 tests/testthat/test-engine_footnotes.R | 16 tests/testthat/test-engine_paginate.R | 112 ++- tests/testthat/test-figure-backends.R | 19 tests/testthat/test-figure.R | 40 + tests/testthat/test-font_metrics.R | 164 +++++ tests/testthat/test-fonts.R | 9 tests/testthat/test-footnote.R | 5 tests/testthat/test-group_display.R | 390 +++++------- tests/testthat/test-group_rows.R |only tests/testthat/test-group_skip.R | 268 ++++---- tests/testthat/test-integration-phase6.R | 10 tests/testthat/test-paginate.R | 63 +- tests/testthat/test-param-sweep.R | 8 tests/testthat/test-pivot_across.R | 2 tests/testthat/test-preset_minimal.R | 7 tests/testthat/test-print.R | 2 tests/testthat/test-sanity.R | 26 tests/testthat/test-style-connectivity.R | 3 tests/testthat/test-subgroup.R | 48 - tests/testthat/test-width_mode.R | 21 tests/testthat/test-zzz.R | 5 vignettes/articles/data-in.qmd | 2 vignettes/articles/output.qmd | 90 ++ vignettes/articles/presentation.qmd | 21 vignettes/articles/recipes.qmd | 14 vignettes/articles/structure.qmd | 182 +++-- vignettes/tabular.qmd | 16 143 files changed, 5287 insertions(+), 3713 deletions(-)
Title: Hamiltonian Monte Carlo and Other Gradient-Based MCMC Sampling
Algorithms for 'nimble'
Description: Provides gradient-based MCMC sampling algorithms for use with the MCMC engine provided by the 'nimble' package. This includes two versions of Hamiltonian Monte Carlo (HMC) No-U-Turn (NUTS) sampling, and (under development) Langevin samplers. The `NUTS_classic` sampler implements the original HMC-NUTS algorithm as described in Hoffman and Gelman (2014) <doi:10.48550/arXiv.1111.4246>. The `NUTS` sampler is a modern version of HMC-NUTS sampling matching the HMC sampler available in version 2.32.2 of Stan (Stan Development Team, 2023). In addition, convenience functions are provided for generating and modifying MCMC configuration objects which employ HMC sampling. Functionality of the 'nimbleHMC' package is described further in Turek, et al (2024) <doi: 10.21105/joss.06745>.
Author: Daniel Turek [aut, cre],
Perry de Valpine [aut],
Christopher Paciorek [aut]
Maintainer: Daniel Turek <danielturek@gmail.com>
Diff between nimbleHMC versions 0.2.4 dated 2025-12-16 and 0.2.5 dated 2026-07-20
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 1 + R/HMC_samplers.R | 9 ++++----- tests/testthat/test-HMC.R | 2 +- 5 files changed, 14 insertions(+), 14 deletions(-)
Title: Fast C++ Primitives for the 'NeuroAnatomy Toolbox'
Description: Fast functions implemented in C++ via 'Rcpp' to support the
'NeuroAnatomy Toolbox' ('nat') ecosystem. These functions provide large
speed-ups for basic manipulation of neuronal skeletons over pure R
functions found in the 'nat' package. The expectation is that end
users will not use this package directly, but instead the 'nat'
package will automatically use routines from this package when it is
available to enable large performance gains.
Author: Gregory Jefferis [aut, cre]
Maintainer: Gregory Jefferis <jefferis@gmail.com>
Diff between natcpp versions 0.3.0 dated 2026-07-08 and 0.3.1 dated 2026-07-20
natcpp-0.3.0/natcpp/src/Makevars |only natcpp-0.3.1/natcpp/DESCRIPTION | 6 +++--- natcpp-0.3.1/natcpp/MD5 | 9 ++++++--- natcpp-0.3.1/natcpp/NEWS.md | 11 +++++++++++ natcpp-0.3.1/natcpp/cleanup |only natcpp-0.3.1/natcpp/configure |only natcpp-0.3.1/natcpp/src/Makevars.in |only natcpp-0.3.1/natcpp/src/Makevars.win |only 8 files changed, 20 insertions(+), 6 deletions(-)
Title: Tools for Causal Discovery on Observational Data
Description: Tools for causal structure learning from observational data, with emphasis on temporally
ordered variables. The package implements the Temporal Peter–Clark (TPC) algorithm
(Petersen, Osler & Ekstrøm, 2021; <doi:10.1093/aje/kwab087>), the Temporal Greedy
Equivalence Search (TGES) algorithm (Larsen, Ekstrøm & Petersen, 2025; <doi:10.48550/arXiv.2502.06232>)
and Temporal Fast Causal Inference (TFCI). It provides a unified framework for specifying background
knowledge, which can be incorporated into the implemented algorithms from the R packages 'bnlearn'
(Scutari, 2010; <doi:10.18637/jss.v035.i03>) and 'pcalg' (Kalish et al., 2012; <doi:10.18637/jss.v047.i11>),
as well as the Java library 'Tetrad' (Scheines et al., 1998; <doi:10.1207/s15327906mbr3301_3>).
The package further includes utilities for visualization, comparison, and evaluation of graph
structures, facilitating performance evaluation and methodological studies.
Author: Bjarke Hautop Kristensen [aut, cre],
Frederik Fabricius-Bjerre [aut],
Anne Helby Petersen [aut],
Claus Thorn Ekstroem [aut],
Tobias Ellegaard Larsen [ctb]
Maintainer: Bjarke Hautop Kristensen <bjarke.kristensen@sund.ku.dk>
Diff between causalDisco versions 1.1.0 dated 2026-04-13 and 1.2.1 dated 2026-07-20
causalDisco-1.1.0/causalDisco/inst/doc/causal-discovery.R |only causalDisco-1.1.0/causalDisco/inst/doc/causal-discovery.html |only causalDisco-1.1.0/causalDisco/inst/doc/causal-discovery.qmd |only causalDisco-1.1.0/causalDisco/inst/doc/custom-ci-tests.R |only causalDisco-1.1.0/causalDisco/inst/doc/custom-ci-tests.html |only causalDisco-1.1.0/causalDisco/inst/doc/custom-ci-tests.qmd |only causalDisco-1.1.0/causalDisco/inst/doc/knowledge.R |only causalDisco-1.1.0/causalDisco/inst/doc/knowledge.html |only causalDisco-1.1.0/causalDisco/inst/doc/knowledge.qmd |only causalDisco-1.1.0/causalDisco/inst/doc/new-algorithm.R |only causalDisco-1.1.0/causalDisco/inst/doc/new-algorithm.html |only causalDisco-1.1.0/causalDisco/inst/doc/new-algorithm.qmd |only causalDisco-1.1.0/causalDisco/inst/doc/visualization.R |only causalDisco-1.1.0/causalDisco/inst/doc/visualization.html |only causalDisco-1.1.0/causalDisco/inst/doc/visualization.qmd |only causalDisco-1.1.0/causalDisco/man/figures/uncropped-logo-v1.png |only causalDisco-1.1.0/causalDisco/man/figures/uncropped-logo.png |only causalDisco-1.1.0/causalDisco/vignettes/causal-discovery.qmd |only causalDisco-1.1.0/causalDisco/vignettes/custom-boss-variant-cran.png |only causalDisco-1.1.0/causalDisco/vignettes/custom-boss-variant-pkgdown.png |only causalDisco-1.1.0/causalDisco/vignettes/custom-ci-tests.qmd |only causalDisco-1.1.0/causalDisco/vignettes/ges-ebic-tetrad-cran.png |only causalDisco-1.1.0/causalDisco/vignettes/ges-ebic-tetrad-pkgdown.png |only causalDisco-1.1.0/causalDisco/vignettes/knowledge.qmd |only causalDisco-1.1.0/causalDisco/vignettes/new-algorithm.qmd |only causalDisco-1.1.0/causalDisco/vignettes/tikz-tier-plot.png |only causalDisco-1.1.0/causalDisco/vignettes/visualization.qmd |only causalDisco-1.2.1/causalDisco/DESCRIPTION | 35 causalDisco-1.2.1/causalDisco/MD5 | 338 ++-- causalDisco-1.2.1/causalDisco/NAMESPACE | 7 causalDisco-1.2.1/causalDisco/NEWS.md | 88 + causalDisco-1.2.1/causalDisco/R/bnlearn-search.R | 8 causalDisco-1.2.1/causalDisco/R/causalDisco-search.R | 103 + causalDisco-1.2.1/causalDisco/R/check-args.R | 2 causalDisco-1.2.1/causalDisco/R/conditional-independence.R | 8 causalDisco-1.2.1/causalDisco/R/constraint-based-run-helpers.R | 6 causalDisco-1.2.1/causalDisco/R/data.R | 26 causalDisco-1.2.1/causalDisco/R/disco-class.R | 310 +++- causalDisco-1.2.1/causalDisco/R/disco-doc-helpers.R | 17 causalDisco-1.2.1/causalDisco/R/disco-method.R | 2 causalDisco-1.2.1/causalDisco/R/disco.R | 39 causalDisco-1.2.1/causalDisco/R/extend-causaldisco-algs.R | 86 + causalDisco-1.2.1/causalDisco/R/knowledge-conversions.R | 109 - causalDisco-1.2.1/causalDisco/R/knowledge-helpers.R | 62 causalDisco-1.2.1/causalDisco/R/knowledge-manipulation.R | 12 causalDisco-1.2.1/causalDisco/R/knowledge-verbs.R | 63 causalDisco-1.2.1/causalDisco/R/knowledge.R | 319 ++-- causalDisco-1.2.1/causalDisco/R/metrics.R | 4 causalDisco-1.2.1/causalDisco/R/pcalg-search.R | 51 causalDisco-1.2.1/causalDisco/R/pcalg-type-tests.R | 12 causalDisco-1.2.1/causalDisco/R/plot.R | 31 causalDisco-1.2.1/causalDisco/R/rfci.R |only causalDisco-1.2.1/causalDisco/R/runners.R | 50 causalDisco-1.2.1/causalDisco/R/simulation.R | 40 causalDisco-1.2.1/causalDisco/R/tetrad-graph.R | 24 causalDisco-1.2.1/causalDisco/R/tetrad-search.R | 38 causalDisco-1.2.1/causalDisco/R/tfci-run.R | 20 causalDisco-1.2.1/causalDisco/R/tges-run.R | 4 causalDisco-1.2.1/causalDisco/R/tpc-run.R | 289 +++- causalDisco-1.2.1/causalDisco/build/partial.rdb |binary causalDisco-1.2.1/causalDisco/build/vignette.rds |binary causalDisco-1.2.1/causalDisco/data/nlsy97.rda |only causalDisco-1.2.1/causalDisco/inst/WORDLIST | 10 causalDisco-1.2.1/causalDisco/inst/doc/causalDisco.R | 109 - 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causalDisco-1.2.1/causalDisco/tests/testthat/test-knowledge.R | 148 ++ causalDisco-1.2.1/causalDisco/tests/testthat/test-make-tikz.R | 27 causalDisco-1.2.1/causalDisco/tests/testthat/test-pc.R | 9 causalDisco-1.2.1/causalDisco/tests/testthat/test-pcalg-search.R | 39 causalDisco-1.2.1/causalDisco/tests/testthat/test-plot.R | 17 causalDisco-1.2.1/causalDisco/tests/testthat/test-rfci.R |only causalDisco-1.2.1/causalDisco/tests/testthat/test-runners.R |only causalDisco-1.2.1/causalDisco/tests/testthat/test-score-based-methods.R | 11 causalDisco-1.2.1/causalDisco/tests/testthat/test-simulation.R | 16 causalDisco-1.2.1/causalDisco/tests/testthat/test-tfci-run.R | 24 causalDisco-1.2.1/causalDisco/tests/testthat/test-tfci.R | 67 causalDisco-1.2.1/causalDisco/tests/testthat/test-tges.R | 24 causalDisco-1.2.1/causalDisco/tests/testthat/test-tpc-run.R | 124 + causalDisco-1.2.1/causalDisco/tests/testthat/test-tpc.R | 127 + causalDisco-1.2.1/causalDisco/vignettes/causalDisco.qmd | 113 - 191 files changed, 4740 insertions(+), 3139 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-12 0.4.2
2016-08-28 0.4.0
2016-08-11 0.3.1
2016-06-20 0.3.0
2015-12-11 0.2
2015-11-12 0.1
Title: Kuhn-Tucker and Multiple Discrete-Continuous Extreme Value
Models
Description: Estimates and simulates Kuhn-Tucker demand models with individual heterogeneity. The package implements the multiple-discrete continuous extreme value (MDCEV) model and the Kuhn-Tucker specification common in the environmental economics literature on recreation demand. Latent class and random parameters specifications can be implemented and the models are fit using maximum likelihood estimation or Bayesian estimation. All models are implemented in 'Stan' (see Stan Development Team, 2019) <https://mc-stan.org/>. The package also implements demand forecasting (Pinjari and Bhat (2011) <https://repositories.lib.utexas.edu/handle/2152/23880>) and welfare calculation (Lloyd-Smith (2018) <doi:10.1016/j.jocm.2017.12.002>) for policy simulation. 'Stan' models can be estimated using either the 'cmdstanr' (default) or 'rstan' backend. If using 'cmdstanr', then user will need to install 'cmdstanr' manually <https://mc-stan.org/cmdstanr/>.
Author: Patrick Lloyd-Smith [aut, cre],
Trustees of Columbia University [cph]
Maintainer: Patrick Lloyd-Smith <patrick.lloydsmith@usask.ca>
Diff between rmdcev versions 1.3.0 dated 2026-03-10 and 1.3.3 dated 2026-07-20
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Title: Tidy Tools for Joinpoint Regression Models
Description: Provides tools to fit joinpoint regression models with a log-linear
specification by levels of a categorical variable. The package acts as a
wrapper around the 'segmented' package, facilitating model fitting, selection,
and interpretation. It includes functions to estimate the Annual Percent Change
(APC) and the Average Annual Percent Change (AAPC), along with their 95%
confidence intervals, and to generate formatted summary tables and plots of results.
Author: Tamara Ricardo [aut, cre]
Maintainer: Tamara Ricardo <tamararicardo83@gmail.com>
Diff between joinpointR versions 1.0.0 dated 2026-06-10 and 1.1.0 dated 2026-07-20
DESCRIPTION | 6 MD5 | 20 +-- NEWS.md | 7 + R/as_ft_jp.R | 4 R/model_jp.R | 25 +++- README.md | 279 ++++++++++++++++++++++----------------------- inst/doc/introduction.R | 2 inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 124 ++++++++++---------- man/model_jp.Rd | 36 ++++- vignettes/introduction.Rmd | 2 11 files changed, 283 insertions(+), 224 deletions(-)
Title: Discrete Curvature with 'shiny' Explorer
Description: Implements discrete curvature estimation for ordered planar point
sequences using circumcenter geometry on consecutive triplets, exposed
through compiled C plus plus (C++) code via 'Rcpp' for speed and numerical
robustness. The package is useful for objective elbow detection in
multivariate workflows, especially principal component analysis (PCA), where
selecting the number of retained components can be subjective. It provides a
'shiny' interface that supports upload of raw datasets or explained-variance
tables, computes Kaiser-Meyer-Olkin (KMO) sampling-adequacy diagnostics,
evaluates individual and cumulative variance curves, and reports curvature-
based decision rules (m* and m**) with visual summaries for reproducible
component-selection decisions.
References: Arney et al. (2001); Axler
(2024) <doi:10.1007/978-3-031-41026-0>; Bjorklund (2019)
<doi:10.1111/evo.13835>; Burden and Faires (2015); Chang et al. (2023)
<https://CRAN.R-project.org/package=shiny>; Christen [...truncated...]
Author: Aquiles Darghan [aut],
Jorge Jola [aut, cre]
Maintainer: Jorge Jola <jjolaher@purdue.edu>
Diff between Dcurvature versions 0.0.3 dated 2026-05-28 and 0.0.4 dated 2026-07-20
DESCRIPTION | 6 ++--- MD5 | 10 ++++++--- NAMESPACE | 1 NEWS.md |only R/selection.R |only inst/app/app.R | 44 ++++++++++++++++--------------------------- man/select_components.Rd |only tests/testthat/test-select.R |only 8 files changed, 28 insertions(+), 33 deletions(-)
Title: Data to Accompany Smithson & Merkle, 2013
Description: Contains data files to accompany Smithson & Merkle (2013), Generalized Linear Models for Categorical and Continuous Limited Dependent Variables.
Author: Edgar Merkle [cre, aut] ,
Michael Smithson [ctb]
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between smdata versions 1.2 dated 2018-05-22 and 1.3 dated 2026-07-20
DESCRIPTION | 21 +++++++++++++++------ MD5 | 10 +++++----- NEWS | 4 +++- man/skipping.Rd | 2 +- man/trlong.Rd | 2 +- man/workdays.Rd | 2 +- 6 files changed, 26 insertions(+), 15 deletions(-)
Title: Customizing Structural Equation Modelling Plots
Description: Most function focus on specific ways to customize a graph.
They use a 'qgraph' output as the first argument, and return a
modified 'qgraph' object. This allows the functions to be chained
by a pipe operator.
Author: Shu Fai Cheung [aut, cre] ,
Mark Hok Chio Lai [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between semptools versions 0.3.3 dated 2026-03-17 and 0.4.0 dated 2026-07-20
semptools-0.3.3/semptools/man/set_edge_label_position.Rd |only semptools-0.3.3/semptools/tests/testthat/test-move_ndoe.R |only semptools-0.4.0/semptools/DESCRIPTION | 8 semptools-0.4.0/semptools/MD5 | 174 ++- semptools-0.4.0/semptools/NAMESPACE | 19 semptools-0.4.0/semptools/NEWS.md | 173 +++ semptools-0.4.0/semptools/R/add_object.R | 5 semptools-0.4.0/semptools/R/add_rsq.R | 128 ++ semptools-0.4.0/semptools/R/auto_factor_point_to.R | 4 semptools-0.4.0/semptools/R/auto_layout.R | 115 +- semptools-0.4.0/semptools/R/auto_layout_helpers.R | 55 + semptools-0.4.0/semptools/R/change_node_label.R | 75 + semptools-0.4.0/semptools/R/edge_index.R | 127 ++ semptools-0.4.0/semptools/R/get_edge_attribute.R |only semptools-0.4.0/semptools/R/get_node_attribute.R |only semptools-0.4.0/semptools/R/layout_matrix.R | 19 semptools-0.4.0/semptools/R/mark_se.R | 17 semptools-0.4.0/semptools/R/mark_sig.R | 202 +++ semptools-0.4.0/semptools/R/move_node.R | 104 +- semptools-0.4.0/semptools/R/rescale_layout.R | 58 - semptools-0.4.0/semptools/R/rotate_resid.R | 52 - semptools-0.4.0/semptools/R/safe_edge_label_positions.R | 127 ++ semptools-0.4.0/semptools/R/safe_resid_position.R | 107 +- semptools-0.4.0/semptools/R/set_cfa_layout.R | 75 + semptools-0.4.0/semptools/R/set_curve.R | 59 + semptools-0.4.0/semptools/R/set_edge_attribute.R | 247 ++++ semptools-0.4.0/semptools/R/set_edge_color.R | 25 semptools-0.4.0/semptools/R/set_edge_label_position.R | 465 +++++++-- semptools-0.4.0/semptools/R/set_edge_lty.R |only semptools-0.4.0/semptools/R/set_edge_width.R |only semptools-0.4.0/semptools/R/set_graph_attributes.R |only semptools-0.4.0/semptools/R/set_node_attribute.R | 201 +++ semptools-0.4.0/semptools/R/set_node_attribute_helpers.R |only semptools-0.4.0/semptools/R/set_node_border.R |only semptools-0.4.0/semptools/R/set_node_color.R |only semptools-0.4.0/semptools/R/set_node_label.R |only semptools-0.4.0/semptools/R/set_node_size.R |only semptools-0.4.0/semptools/R/set_sem_layout.R | 74 + semptools-0.4.0/semptools/README.md | 78 + semptools-0.4.0/semptools/build/vignette.rds |binary semptools-0.4.0/semptools/inst/doc/keep_or_drop_nodes.html | 8 semptools-0.4.0/semptools/inst/doc/layout_matrix.html | 4 semptools-0.4.0/semptools/inst/doc/quick_start_cfa.html | 4 semptools-0.4.0/semptools/inst/doc/quick_start_sem.html | 4 semptools-0.4.0/semptools/inst/doc/second_order.html | 4 semptools-0.4.0/semptools/inst/doc/semptools.R | 276 +++-- semptools-0.4.0/semptools/inst/doc/semptools.Rmd | 350 ++++-- semptools-0.4.0/semptools/inst/doc/semptools.html | 511 +++++----- semptools-0.4.0/semptools/man/add_rsq.Rd | 8 semptools-0.4.0/semptools/man/auto_factor_point_to.Rd | 4 semptools-0.4.0/semptools/man/auto_layout_mediation.Rd | 20 semptools-0.4.0/semptools/man/change_node_label.Rd | 4 semptools-0.4.0/semptools/man/get_edge_attribute.Rd |only semptools-0.4.0/semptools/man/get_node_attribute.Rd |only semptools-0.4.0/semptools/man/layout_matrix.Rd | 12 semptools-0.4.0/semptools/man/mark_sig.Rd | 2 semptools-0.4.0/semptools/man/move_node.Rd | 19 semptools-0.4.0/semptools/man/rescale_layout.Rd | 15 semptools-0.4.0/semptools/man/rotate_resid.Rd | 25 semptools-0.4.0/semptools/man/safe_edge_label_position.Rd | 23 semptools-0.4.0/semptools/man/safe_resid_position.Rd | 23 semptools-0.4.0/semptools/man/semptools-package.Rd | 1 semptools-0.4.0/semptools/man/set_cfa_layout.Rd | 13 semptools-0.4.0/semptools/man/set_curve.Rd | 49 semptools-0.4.0/semptools/man/set_edge_attribute.Rd | 43 semptools-0.4.0/semptools/man/set_edge_color.Rd | 23 semptools-0.4.0/semptools/man/set_edge_label_attributes.Rd |only semptools-0.4.0/semptools/man/set_edge_line_type.Rd |only semptools-0.4.0/semptools/man/set_edge_line_width.Rd |only semptools-0.4.0/semptools/man/set_graph_attributes.Rd |only semptools-0.4.0/semptools/man/set_node_attribute.Rd | 39 semptools-0.4.0/semptools/man/set_node_border.Rd |only semptools-0.4.0/semptools/man/set_node_color.Rd |only semptools-0.4.0/semptools/man/set_node_label.Rd |only semptools-0.4.0/semptools/man/set_node_size.Rd |only semptools-0.4.0/semptools/man/set_sem_layout.Rd | 13 semptools-0.4.0/semptools/man/to_list_of_lists.Rd | 2 semptools-0.4.0/semptools/tests/testthat/test-add_rsq.R | 31 semptools-0.4.0/semptools/tests/testthat/test-change-node.R | 36 semptools-0.4.0/semptools/tests/testthat/test-change-node_attribute.R | 17 semptools-0.4.0/semptools/tests/testthat/test-change-node_named_vector.R | 20 semptools-0.4.0/semptools/tests/testthat/test-get_node_attribute.R |only semptools-0.4.0/semptools/tests/testthat/test-layout_matrix.R | 29 semptools-0.4.0/semptools/tests/testthat/test-list_of_qgraphs.R |only semptools-0.4.0/semptools/tests/testthat/test-list_of_qgraphs_2.R |only semptools-0.4.0/semptools/tests/testthat/test-list_of_qgraphs_3.R |only semptools-0.4.0/semptools/tests/testthat/test-list_of_qgraphs_4.R |only semptools-0.4.0/semptools/tests/testthat/test-list_of_qgraphs_5.R |only semptools-0.4.0/semptools/tests/testthat/test-list_of_qgraphs_change_node_label.R |only semptools-0.4.0/semptools/tests/testthat/test-move_node.R |only semptools-0.4.0/semptools/tests/testthat/test-set_color.R | 85 + semptools-0.4.0/semptools/tests/testthat/test-set_curve_bidirectional.R | 39 semptools-0.4.0/semptools/tests/testthat/test-set_curve_skip_edges.R |only semptools-0.4.0/semptools/tests/testthat/test-set_edge_attribute.R | 121 +- semptools-0.4.0/semptools/tests/testthat/test-set_edge_attribute_loadings.R | 21 semptools-0.4.0/semptools/tests/testthat/test-set_edge_label.R |only semptools-0.4.0/semptools/tests/testthat/test-set_edge_label_bg.R |only semptools-0.4.0/semptools/tests/testthat/test-set_edge_label_position.R | 15 semptools-0.4.0/semptools/tests/testthat/test-set_edge_label_position_skip_edges.R |only semptools-0.4.0/semptools/tests/testthat/test-set_edge_line_type.R |only semptools-0.4.0/semptools/tests/testthat/test-set_edge_width.R |only semptools-0.4.0/semptools/tests/testthat/test-set_graph_attributes.R |only semptools-0.4.0/semptools/tests/testthat/test-set_node_attribute.R | 182 +++ semptools-0.4.0/semptools/tests/testthat/test-set_node_attribute_helpers.R |only semptools-0.4.0/semptools/tests/testthat/test-set_node_border.R |only semptools-0.4.0/semptools/tests/testthat/test-set_sem_layout_single.R | 69 - semptools-0.4.0/semptools/tests/testthat/test-using_stored_object.R |only semptools-0.4.0/semptools/vignettes/semptools.Rmd | 350 ++++-- 108 files changed, 4211 insertions(+), 1096 deletions(-)
Title: 'Praat Picture' Style Plots of Acoustic Data
Description: Quickly and easily generate plots of acoustic data aligned with transcriptions similar to those made in 'Praat' using either derived signals generated directly in R with 'wrassp' or imported derived signals from 'Praat'. Provides easy and fast out-of-the-box solutions but also a high extent of flexibility. Also provides options for embedding audio in figures and animating figures.
Author: Rasmus Puggaard-Rode [aut, cre, cph]
Maintainer: Rasmus Puggaard-Rode <rasmus.puggaard-rode@ling-phil.ox.ac.uk>
Diff between praatpicture versions 1.8.0 dated 2026-04-22 and 1.9.0 dated 2026-07-20
DESCRIPTION | 6 +-- MD5 | 42 +++++++++++------------ NEWS.md | 6 +++ R/draw_spectralslice.R | 4 +- R/formantplot.R | 25 ++++++++----- R/intensity_overlay.R | 35 +++++++++++-------- R/intensityplot.R | 15 +++++--- R/pitch_overlay.R | 34 +++++++++++------- R/pitchplot.R | 27 +++++++++----- R/praatpicture.R | 60 ++++++++++++++++++++------------- R/specplot.R | 25 ++++++++----- R/waveplot.R | 14 ++++++- inst/shiny/shiny_praatpicture/server.R | 3 + inst/shiny/shiny_praatpicture/ui.R | 3 + man/formantplot.Rd | 6 ++- man/intensity_overlay.Rd | 6 ++- man/intensityplot.Rd | 6 ++- man/pitch_overlay.Rd | 6 ++- man/pitchplot.Rd | 6 ++- man/praatpicture.Rd | 4 ++ man/specplot.Rd | 6 ++- man/waveplot.Rd | 6 ++- 22 files changed, 222 insertions(+), 123 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multisession)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers, etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.70.0 dated 2026-03-14 and 1.75.0 dated 2026-07-20
.Rinstignore |only DESCRIPTION | 10 MD5 | 188 ++++++++++------ NAMESPACE | 2 NEWS.md | 53 ++++ R/000.bquote.R | 69 +---- R/000.re-exports.R | 21 - R/010.tweakable.R | 6 R/backend_api-01-FutureBackend-class.R | 4 R/backend_api-03.MultiprocessFutureBackend-class.R | 2 R/backend_api-11.ClusterFutureBackend-class.R | 6 R/backend_api-11.MulticoreFutureBackend-class.R | 8 R/backend_api-11.SequentialFutureBackend-class.R | 2 R/backend_api-13.MultisessionFutureBackend-class.R | 3 R/backend_api-Future-class.R | 100 ++++++-- R/core_api-value.R | 4 R/demo_api-mandelbrot.R | 92 +++---- R/protected_api-FutureGlobals-class.R | 10 R/protected_api-FutureResult-class.R | 2 R/protected_api-globals.R | 4 R/protected_api-journal.R | 128 ++++++++++ R/utils-immediateCondition.R | 4 R/utils-marshalling.R | 2 R/utils-options.R | 119 +++++----- R/utils-rng_utils.R | 4 R/utils_api-capture_journals.R | 6 R/utils_api-makeClusterFuture.R | 8 R/utils_api-plan.R | 15 + R/utils_api-tweak.R | 4 R/zzz.R | 5 build/vignette.rds |binary inst/doc/future-1-overview.html | 18 - inst/doc/future-2-output.html | 18 - inst/doc/future-2b-backend.html | 18 - inst/doc/future-3-topologies.html | 18 - inst/doc/future-4-issues.html | 18 - inst/doc/future-4-non-exportable-objects.html | 18 - inst/doc/future-5-startup.html | 18 - inst/doc/future-6-future-api-backend-specification.html | 18 - inst/doc/future-7-for-package-developers.html | 18 - inst/doc/future-8-how-future-is-validated.html | 18 - inst/testme/run.R | 16 + inst/testme/test-FutureBackend-factories.R |only inst/testme/test-FutureCondition.R |only inst/testme/test-UniprocessFuture.R |only inst/testme/test-capture_journals.R | 68 +++-- inst/testme/test-check_connection_details.R |only inst/testme/test-cluster,worker-termination.R | 2 inst/testme/test-cluster-missing-future-pkg.R | 2 inst/testme/test-deprecation.R |only inst/testme/test-early-signaling.R | 2 inst/testme/test-import_from.R |only inst/testme/test-interrupts-from-worker-itself.R | 4 inst/testme/test-journal-methods.R |only inst/testme/test-make_rng_seeds.R |only inst/testme/test-marshalling.R |only inst/testme/test-minifuture.R |only inst/testme/test-multicore,multithreading.R | 4 inst/testme/test-multicore,worker-termination.R | 4 inst/testme/test-multisession-libpaths.R | 27 +- inst/testme/test-nbrOfWorkers-legacy.R |only inst/testme/test-nbrOfWorkers.R | 17 + inst/testme/test-nested_futures,mc.cores.R | 2 inst/testme/test-objectSize.R | 80 ++++++ inst/testme/test-plan.R | 24 +- inst/testme/test-protected-classes.R |only inst/testme/test-prune_pkg_code.R |only inst/testme/test-readImmediateConditions.R |only inst/testme/test-registerClusterTypes.R |only inst/testme/test-requestCore.R | 2 inst/testme/test-reset-methods.R |only inst/testme/test-result.R |only inst/testme/test-rng.R | 9 inst/testme/test-signalEarly.R |only inst/testme/test-sourceFutureStartupScript.R |only inst/testme/test-stealth_sample.R |only inst/testme/test-sticky_globals.R |only inst/testme/test-tweakable.R |only inst/testme/test-update_package_option.R |only inst/testme/test-utils-basic.R |only inst/testme/test-uuid.R | 2 inst/testme/test-value-error-cancels-set.R | 9 inst/testme/test-value-list-options.R |only man/Future-class.Rd | 34 +- man/FutureBackend-class.Rd | 7 man/cluster.Rd | 3 man/future.Rd | 32 +- man/futureAssign.Rd | 24 +- man/getGlobalsAndPackages.Rd | 4 man/makeClusterFuture.Rd | 2 man/mandelbrot.Rd | 29 +- man/multicore.Rd | 3 man/re-exports.Rd | 4 man/save_rds.Rd | 4 man/sequential.Rd | 3 man/zzz-future.options.Rd | 10 tests/test-FutureBackend-factories.R |only tests/test-FutureCondition.R |only tests/test-UniprocessFuture.R |only tests/test-check_connection_details.R |only tests/test-deprecation.R |only tests/test-import_from.R |only tests/test-journal-methods.R |only tests/test-make_rng_seeds.R |only tests/test-marshalling.R |only tests/test-minifuture.R |only tests/test-nbrOfWorkers-legacy.R |only tests/test-protected-classes.R |only tests/test-prune_pkg_code.R |only tests/test-readImmediateConditions.R |only tests/test-registerClusterTypes.R |only tests/test-reset-methods.R |only tests/test-result.R |only tests/test-signalEarly.R |only tests/test-sourceFutureStartupScript.R |only tests/test-stealth_sample.R |only tests/test-sticky_globals.R |only tests/test-tweakable.R |only tests/test-update_package_option.R |only tests/test-utils-basic.R |only tests/test-value-list-options.R |only 121 files changed, 985 insertions(+), 509 deletions(-)
Title: Bayesian Functional Linear Regression with Sparse Step Functions
Description: A method for the Bayesian functional linear regression model (scalar-on-function),
including two estimators of the coefficient function and an estimator of its support.
A representation of the posterior distribution is also available. Grollemund P-M., Abraham C.,
Baragatti M., Pudlo P. (2019) <doi:10.1214/18-BA1095>.
Author: Paul-Marie Grollemund [aut, cre],
Isabelle Sanchez [ctr],
Meili Baragatti [ctr]
Maintainer: Paul-Marie Grollemund <paul_marie.grollemund@uca.fr>
Diff between bliss versions 1.1.1 dated 2024-07-17 and 1.1.3 dated 2026-07-20
DESCRIPTION | 6 +-- MD5 | 12 +++---- R/Auxiliary_and_graphics_functions.R | 9 ++++- R/basic_functions.R | 3 + inst/doc/BlissIntro.R | 56 +++++++++++++++++------------------ inst/doc/BlissIntro.html | 37 ++++++++++------------- man/image_Bliss.Rd | 10 +++++- 7 files changed, 71 insertions(+), 62 deletions(-)
Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions.
Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc.
Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM)
for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates).
A group of functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc.
Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of larg [...truncated...]
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrMisc versions 2.1.0 dated 2026-06-08 and 2.1.1 dated 2026-07-20
DESCRIPTION | 6 - MD5 | 116 ++++++++++++----------- NAMESPACE | 1 R/asSepList.R | 4 R/checkAvSd.R | 27 +++-- R/checkGroupOrder.R | 14 +- R/checkGroupOrderSEM.R | 6 - R/closeMatchMatrix.R | 31 +++--- R/combinatIntTable.R | 13 +- R/combineAsN.R | 8 - R/completeArrLst.R | 12 +- R/concatMatch.R | 1 R/contribToContigPerFrag.R | 29 +++-- R/convPairwiseSetup.R | 4 R/countCloseToLimits.R | 11 +- R/cutAtMultSites.R | 12 +- R/elimCloseCoord.R | 30 +++--- R/exponNormalize.R | 6 - R/extract1chan.R | 2 R/findRepeated.R | 21 ++-- R/findSimilFrom2sets.R | 7 - R/moderTestXgrp.R | 13 +- R/readVarColumns.R | 11 +- R/replNAbyLow.R | 45 +++++---- R/rmSharedWords.R | 3 R/rowGrpNA.R | 133 +++++++++++++++++---------- R/simpleFragFig.R | 34 +++--- R/sortByNRepeated.R | 8 - R/truncateVect.R |only R/volcanoFilter.R | 2 build/vignette.rds |binary inst/doc/wrMiscVignette1.R | 9 + inst/doc/wrMiscVignette1.Rmd | 22 +++- inst/doc/wrMiscVignette1.html | 205 ++++++++++++++++++++++++------------------ man/asSepList.Rd | 4 man/checkAvSd.Rd | 19 ++- man/checkGrpOrder.Rd | 10 +- man/checkGrpOrderSEM.Rd | 2 man/closeMatchMatrix.Rd | 22 ++-- man/combinatIntTable.Rd | 11 +- man/combineAsN.Rd | 2 man/completeArrLst.Rd | 7 - man/contribToContigPerFrag.Rd | 23 +++- man/convPairwiseSetup.Rd | 3 man/countCloseToLimits.Rd | 8 - man/cutAtMultSites.Rd | 14 ++ man/elimCloseCoord.Rd | 8 - man/exponNormalize.Rd | 4 man/extr1chan.Rd | 2 man/findRepeated.Rd | 22 +++- man/findSimilFrom2sets.Rd | 4 man/moderTestXgrp.Rd | 7 - man/readVarColumns.Rd | 7 + man/replNAbyLow.Rd | 16 ++- man/rmSharedWords.Rd | 2 man/rowGrpNA.Rd | 46 +++++---- man/simpleFragFig.Rd | 12 +- man/sortByNRepeated.Rd | 4 man/truncateVect.Rd |only vignettes/wrMiscVignette1.Rmd | 22 +++- 60 files changed, 665 insertions(+), 462 deletions(-)
Title: Data on Base and Recommended Packages for Current and Previous
Versions of R
Description: Provides a dataset of functions in all base and recommended packages of R versions 0.50 onwards.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between rcheology versions 4.6.0.0 dated 2026-04-27 and 4.6.1.0 dated 2026-07-20
DESCRIPTION | 6 +- MD5 | 14 +++--- NEWS.md | 8 +++ README.md | 67 +++++++++++-------------------- data/Rversions.rda |binary data/rcheology.rda |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary 8 files changed, 43 insertions(+), 52 deletions(-)
Title: Chart Generation for 'Microsoft Word', 'Microsoft Excel' and
'Microsoft PowerPoint' Documents
Description: Create native charts for 'Microsoft PowerPoint', 'Microsoft
Excel' and 'Microsoft Word' documents. The resulting charts can then
be edited and annotated in the host application. It provides functions
to create charts and to modify their content and formatting. The
chart's underlying data is automatically saved within the 'Word',
'Excel' or 'PowerPoint' file. It extends the 'officer' package, which
does not provide native 'Microsoft' chart production.
Author: David Gohel [aut, cre],
ArData [cph],
YouGov [fnd],
Jan Marvin Garbuszus [ctb] ,
Stefan Moog [ctb] ,
Eli Daniels [ctb],
Marlon Molina [ctb] ,
Rokas Klydzia [ctb] ,
David Camposeco [ctb] ,
Dan Joplin [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between mschart versions 0.5.0 dated 2026-05-16 and 0.5.1 dated 2026-07-20
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/chart_settings.R | 1 - R/to_pml.R | 2 +- 4 files changed, 7 insertions(+), 8 deletions(-)
Title: The Lorentz Transformation in Relativistic Physics
Description: The Lorentz transformation in special relativity; also the
gyrogroup structure of three-velocities. Performs active and
passive transformations and has the ability to use units in which the
speed of light is not unity. Includes some experimental
functionality for celerity and rapidity. For general relativity,
see the 'schwarzschild' package.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between lorentz versions 1.1-2 dated 2025-01-23 and 1.1-3 dated 2026-07-20
DESCRIPTION | 15 +++-- MD5 | 44 ++++++++--------- NEWS.md |only README.md | 10 +-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/JOSE/paper.md | 93 ++++++++++++++++++++--------------- inst/JOSE/ref.bib | 20 +++++-- inst/doc/lorentz.R | 114 +++++++++++++++++++++----------------------- inst/doc/lorentz.Rnw | 119 +++++++++++++++++++++++----------------------- inst/doc/lorentz.pdf |binary inst/headlight_effect.Rmd | 2 man/Extract.Rd | 14 ++++- man/boost.Rd | 10 +-- man/fourvel.Rd | 2 man/galileo.Rd | 4 - man/gyr.Rd | 2 man/lorentz-package.Rd | 6 +- man/reflect.Rd | 2 man/set.Rd | 3 - man/sol.Rd | 4 - vignettes/lorentz.Rnw | 119 +++++++++++++++++++++++----------------------- vignettes/lorentz.bib | 27 ++++++++++ 24 files changed, 333 insertions(+), 277 deletions(-)
Title: Utilities and Helpers for Single Case Experimental Design (SCED)
using 'ggplot2'
Description: Provides specialized visualization tools for Single-Case Experimental Design (SCED)
research using 'ggplot2'. SCED studies are a crucial methodology in behavioral and
educational research where individual participants serve as their own controls through
carefully designed experimental phases. This package extends 'ggplot2' to create
publication-ready graphics with professional phase change lines, support for multiple
baseline designs, and styling functions that follow SCED visualization conventions.
Key functions include adding phase change demarcation lines to existing plots and
formatting axes with broken axis appearance commonly used in single-case research.
Author: Shawn Gilroy [aut, cre, cph]
Maintainer: Shawn Gilroy <sgilroy1@lsu.edu>
Diff between ggsced versions 0.1.6 dated 2026-01-21 and 0.1.7 dated 2026-07-20
DESCRIPTION | 12 MD5 | 86 NAMESPACE | 28 R/data.R | 69 R/ggsced.R | 490 ++-- R/ggsced_grobs.R | 268 +- R/ggsced_helpers.R | 220 - R/ggsced_reporting.R | 54 R/ggsced_theme.R | 110 R/ggsced_utils.R | 186 - README.md | 733 +++--- build/vignette.rds |binary demo/00Index | 4 demo/demo_gilroy_2015.R | 232 +- demo/demo_gilroy_2021.R | 232 +- inst/doc/ggsced-vignette.R | 1103 ++++----- inst/doc/ggsced-vignette.Rmd | 1456 ++++++------ inst/doc/ggsced-vignette.html | 2425 ++++++++++----------- man/Gilroyetal2015.Rd | 57 man/Gilroyetal2021.Rd | 56 man/ggsced.Rd | 50 man/ggsced_condition_labels.Rd | 39 man/ggsced_extract_domain.Rd | 34 man/ggsced_facet_labels.Rd | 43 man/ggsced_get_panels.Rd | 34 man/ggsced_internal_x_axis.Rd | 44 man/ggsced_internal_y_axis.Rd | 44 man/ggsced_name_dogleg.Rd | 42 man/ggsced_name_dogleg_lateral.Rd | 42 man/ggsced_output_console.Rd | 32 man/ggsced_scale_units.Rd | 38 man/ggsced_style_x.Rd | 42 man/ggsced_style_y.Rd | 42 man/sced_phase_change_complex_lateral_grob.Rd | 42 man/sced_phase_change_complex_lateral_post_grob.Rd | 38 man/sced_phase_change_complex_lateral_pre_grob.Rd | 38 man/sced_phase_change_main_panel_grob.Rd | 38 man/sced_phase_change_simple_lateral_grob.Rd | 42 tests/testthat/Rplots.pdf |binary tests/testthat/test-ggsced.R | 122 - tests/testthat/test-ggsced_helpers.R | 158 - tests/testthat/test-ggsced_scale_units.R | 14 tests/testthat/test-ggsced_theme.R | 8 vignettes/ggsced-vignette.Rmd | 1456 ++++++------ 44 files changed, 5144 insertions(+), 5159 deletions(-)
Title: Fast and Unified Synthetic Control Methods
Description: A unified 'Formula' interface to the Synthetic Control Method
(SCM) and related panel-data causal inference estimators: Synthetic
Difference-in-Differences (SDID), Generalized Synthetic Control (GSC),
Matrix Completion (MC), Time-Aware Synthetic Control (TASC), and Synthetic
Interventions (SI), together with an experimental-design variant.
Computational bottlenecks (quadratic programming, singular value
decomposition, and Kalman filtering) are implemented in 'C++' via
'RcppArmadillo'. Methods are described in Abadie, Diamond and Hainmueller
(2010) <doi:10.1198/jasa.2009.ap08746>, Arkhangelsky, Athey, Hirshberg,
Imbens and Wager (2021) <doi:10.1257/aer.20190159>, Xu (2017)
<doi:10.1017/pan.2016.2>, Athey, Bayati, Doudchenko, Imbens and Khosravi
(2021) <doi:10.1080/01621459.2021.1891924>, and Agarwal, Shah and Shen
(2025) <doi:10.1287/opre.2025.1590>.
Author: Yosuke Abe [aut, cre]
Maintainer: Yosuke Abe <yosuke.abe0507@gmail.com>
Diff between coresynth versions 0.3.0 dated 2026-07-12 and 0.4.0 dated 2026-07-20
DESCRIPTION | 6 MD5 | 62 +- NAMESPACE | 6 NEWS.md | 749 +++++++++++++++++++----------- R/RcppExports.R | 60 ++ R/broom.R | 2 R/coresynth-package.R | 2 R/plot.R | 642 +++++++++++++++++++++++-- R/scm.R | 666 +++++++++++++++++++++++--- R/scm_fit.R | 79 ++- R/sdid.R | 51 +- README.md | 87 ++- inst/doc/coresynth.Rmd | 16 inst/doc/coresynth.html | 14 man/figures/README-plot-gap-1.png |binary man/mspe_ratio_pval.Rd | 26 - man/plot.coresynth.Rd | 85 ++- man/plot.scm_placebo.Rd | 27 - man/plot_data.Rd |only man/scm_fit.Rd | 63 ++ man/scm_inference.Rd |only man/scm_placebo_cpp.Rd | 7 man/scm_placebo_x_cpp.Rd |only man/scm_weights_cpp.Rd | 24 man/sdid_inference.Rd | 28 - man/tidy.coresynth_inference.Rd | 2 src/RcppExports.cpp | 46 + src/inference.cpp | 206 ++++++++ src/optim.cpp | 16 src/scm.cpp | 948 ++++++++++++++++++++++++++++++++++---- src/sdid.cpp | 2 tests/testthat/test-integration.R | 747 ++++++++++++++++++++++++++++- tests/testthat/test-placebo.R |only vignettes/coresynth.Rmd | 16 34 files changed, 4021 insertions(+), 664 deletions(-)
Title: Classification and Regression Trees
Description: Classification and regression trees.
Author: Brian Ripley [aut, cre]
Maintainer: Brian Ripley <Brian.Ripley@R-project.org>
Diff between tree versions 1.0-45 dated 2025-08-18 and 1.0-46 dated 2026-07-20
ChangeLog | 17 +++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- R/treemisc.R | 6 +++--- man/tree.control.Rd | 6 ++++-- src/grow.c | 4 +++- tests/too_large.R |only 7 files changed, 37 insertions(+), 15 deletions(-)
Title: Transfer of Hydrograph from Gauged to Ungauged Catchments
Description: A geomorphology-based hydrological modelling for transferring
streamflow measurements from gauged to ungauged catchments. Inverse
modelling enables to estimate net rainfall from streamflow measurements
following Boudhraâ et al. (2018) <doi:10.1080/02626667.2018.1425801>.
Resulting net rainfall is then estimated on the ungauged catchments
by spatial interpolation in order to finally simulate streamflow
following de Lavenne et al. (2016) <doi:10.1002/2016WR018716>.
Author: Alban de Lavenne [aut, cre] ,
Christophe Cudennec [ths] ,
Tom Loree [ctb],
Herve Squividant [ctb]
Maintainer: Alban de Lavenne <alban.delavenne@inrae.fr>
Diff between transfR versions 1.1.4 dated 2025-03-20 and 1.1.12 dated 2026-07-20
DESCRIPTION | 22 ++-- MD5 | 54 ++++----- R/convolution.R | 17 +-- R/hdist.R | 43 ++----- R/inversion.R | 94 ++++++++++++----- R/mixr.R | 43 ++++--- R/rsimilarity.R | 2 R/rsimilarity_model.R | 33 ++++-- R/uh.R | 24 ++-- R/utils.R | 38 ------- R/velocity.R | 6 - build/partial.rdb |binary build/vignette.rds |binary data/Blavet.rda |binary data/Oudon.rda |binary inst/doc/V01_get_started.R | 2 inst/doc/V01_get_started.Rmd | 2 inst/doc/V01_get_started.html | 40 +++---- inst/doc/V02_inputs_preparation_stars.html | 26 ++-- inst/doc/V03_inputs_preparation_whitebox.R | 104 +++++++++---------- inst/doc/V03_inputs_preparation_whitebox.Rmd | 18 +-- inst/doc/V03_inputs_preparation_whitebox.html | 141 ++++++++++++-------------- man/hdist.Rd | 10 - man/inversion.Rd | 2 man/rsimilarity.Rd | 2 man/rsimilarity_model.Rd | 8 + vignettes/V01_get_started.Rmd | 2 vignettes/V03_inputs_preparation_whitebox.Rmd | 18 +-- 28 files changed, 378 insertions(+), 373 deletions(-)
Title: Krippendorff's Alpha for Multi-Valued Data
Description: Calculate Krippendorff's alpha for multi-valued data using the methods
introduced by Krippendorff and Craggs (2016) <doi:10.1080/19312458.2016.1228863>.
Nominal, ordinal, interval, and ratio data types are supported, with option to
create bootstrapped estimates of alpha.
Author: Corie Drake [aut, cre, cph]
Maintainer: Corie Drake <therealcfdrake@gmail.com>
This is a re-admission after prior archival of version 0.6.0 dated 2026-06-15
Diff between mvalpha versions 0.6.0 dated 2026-06-15 and 0.6.3 dated 2026-07-20
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 13 ++++++++++++- R/classes_and_generics.R | 2 +- build/partial.rdb |binary src/Makevars | 2 +- src/mvalpha_internal_functions.cpp | 13 +++++++++++-- 7 files changed, 34 insertions(+), 14 deletions(-)
Title: Exact Distributions of Some Functions of the Ordered Multinomial
Counts
Description: Implements exact algorithms for computing the distributions
of the maximum, the minimum, the range, and the sum of the J largest
order statistics of a multinomial random vector. Two complementary
algorithm families are provided: the recursive tree-traversal method
of Bonetti, Cirillo, and Ogay (2019) <doi:10.1098/rsos.190198>, which
covers all four statistics under the equiprobable hypothesis; and the
stochastic matrix method of Corrado (2011)
<doi:10.1007/s11222-010-9174-3>, which handles the maximum, minimum,
and range for arbitrary probability vectors. Functions for power
evaluation and sample size determination for goodness-of-fit tests
based on these order statistics are also provided. Computationally
intensive routines are implemented in 'C++' for efficiency.
Author: Sergio Venturini [aut, cre],
Marco Bonetti [ctb]
Maintainer: Sergio Venturini <sergio.venturini@unicatt.it>
Diff between XOMultinom versions 0.9.0 dated 2026-06-21 and 0.9.0-2 dated 2026-07-20
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/incr_decr.R | 20 ++++++++++++++++++++ R/maxmin_sample_size.R | 10 +++++----- R/utils.R | 5 ++--- R/zz_datasets.R | 35 ++++++++++++++--------------------- build/partial.rdb |binary man/leukaemia.Rd | 21 +++++++++------------ man/mainsail.Rd | 16 +++++----------- man/make_breaks.Rd | 2 +- man/max_count.Rd | 2 +- man/rand_test.Rd | 2 +- 12 files changed, 73 insertions(+), 70 deletions(-)
Title: Processing and Analyzing Amplicon Sequence Data
Description: Processing and analysis of targeted sequencing data. The package provides a user-friendly interface for core 'VSEARCH' (Rognes et al. (2016), <doi:10.7717/peerj.2584>) functions, in addition to tools for visualization and parameter tuning.
Author: Cassandra Stamsaas [cre, aut],
Lars Snipen [aut],
Torbjoern Rognes [aut],
Hilde Vinje [aut]
Maintainer: Cassandra Stamsaas <cassandra.stamsaas@nmbu.no>
Diff between Rsearch versions 1.0.0 dated 2025-10-26 and 1.1.0 dated 2026-07-20
Rsearch-1.0.0/Rsearch/inst/CITATION |only Rsearch-1.0.0/Rsearch/man/figures/rsearch_logo.png |only Rsearch-1.1.0/Rsearch/DESCRIPTION | 15 - Rsearch-1.1.0/Rsearch/MD5 | 57 ++-- Rsearch-1.1.0/Rsearch/NAMESPACE | 1 Rsearch-1.1.0/Rsearch/NEWS.md |only Rsearch-1.1.0/Rsearch/R/plot_base_quality.R | 37 ++- Rsearch-1.1.0/Rsearch/R/plot_read_quality.R | 3 Rsearch-1.1.0/Rsearch/R/taxonomy_tree.R |only Rsearch-1.1.0/Rsearch/R/vs_alignment_classification.R | 3 Rsearch-1.1.0/Rsearch/R/vs_cluster_size.R | 214 +++++++++--------- Rsearch-1.1.0/Rsearch/R/vs_cluster_unoise.R | 83 +++++- Rsearch-1.1.0/Rsearch/R/vs_fastq_mergepairs.R | 3 Rsearch-1.1.0/Rsearch/R/vs_fastx_subsample.R | 3 Rsearch-1.1.0/Rsearch/R/vs_fastx_trim_filt.R | 3 Rsearch-1.1.0/Rsearch/R/vs_fastx_uniques.R | 3 Rsearch-1.1.0/Rsearch/R/vs_optimize_truncee_rate.R | 85 ++++--- Rsearch-1.1.0/Rsearch/R/vs_optimize_truncqual.R | 86 ++++--- Rsearch-1.1.0/Rsearch/R/vs_sintax.R | 154 ------------ Rsearch-1.1.0/Rsearch/R/vs_usearch_global.R | 101 ++++---- Rsearch-1.1.0/Rsearch/R/vsearch.R | 15 - Rsearch-1.1.0/Rsearch/README.md |only Rsearch-1.1.0/Rsearch/man/Rsearch-package.Rd | 3 Rsearch-1.1.0/Rsearch/man/figures/logo.png |only Rsearch-1.1.0/Rsearch/man/plot_read_quality.Rd | 3 Rsearch-1.1.0/Rsearch/man/taxonomy_distance.Rd |only Rsearch-1.1.0/Rsearch/man/taxonomy_tree.Rd | 18 - Rsearch-1.1.0/Rsearch/man/vs_cluster_size.Rd | 27 +- Rsearch-1.1.0/Rsearch/man/vs_cluster_unoise.Rd | 29 ++ Rsearch-1.1.0/Rsearch/man/vs_optimize_truncee_rate.Rd | 15 + Rsearch-1.1.0/Rsearch/man/vs_optimize_truncqual.Rd | 15 + Rsearch-1.1.0/Rsearch/man/vs_usearch_global.Rd | 20 + Rsearch-1.1.0/Rsearch/man/vsearch.Rd | 10 33 files changed, 537 insertions(+), 469 deletions(-)
Title: Panel Treatment Effects Tools
Description: Generic code for estimating treatment effects with panel data. The idea is to break into separate steps organizing the data, looping over groups and time periods, computing group-time average treatment effects, and aggregating group-time average treatment effects. Often, one is able to implement a new identification/estimation procedure by simply replacing the step on estimating group-time average treatment effects. See several different examples of this approach in the package documentation.
Author: Brantly Callaway [aut, cre]
Maintainer: Brantly Callaway <brantly.callaway@uga.edu>
This is a re-admission after prior archival of version 1.0.0 dated 2025-02-13
Diff between ptetools versions 1.0.0 dated 2025-02-13 and 1.0.1 dated 2026-07-20
DESCRIPTION | 12 MD5 | 81 +++--- NAMESPACE | 16 + NEWS.md | 18 + R/attgt_functions.R | 95 ++++--- R/classes.R | 141 ++++++++-- R/covid_attgt.R |only R/data.R |only R/empirical_bootstrap.R | 400 +++++++++++++++++++++++-------- R/ggpte.R | 341 ++++++++++++++++++++++---- R/imports.R | 1 R/process_att_gt.R | 13 - R/process_dose_gt.R | 90 +----- R/pte.R | 69 ++++- R/pte_aggte.R | 53 ++-- R/pte_params.R | 68 ++++- R/subset_functions.R | 52 ++++ R/zzz.R | 2 README.md | 149 +++++------ data |only inst/CITATION | 4 man/autoplot.dose_obj.Rd |only man/autoplot.pte_emp_boot.Rd |only man/autoplot.pte_qtt.Rd |only man/autoplot.pte_results.Rd |only man/covid_attgt.Rd |only man/covid_data.Rd |only man/did_rcs_attgt.Rd |only man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/ggpte.Rd | 12 man/ggpte_cont.Rd | 12 man/panel_empirical_bootstrap.Rd | 5 man/plot.dose_obj.Rd |only man/plot.pte_emp_boot.Rd |only man/plot.pte_qtt.Rd |only man/plot.pte_results.Rd |only man/print.pte_qtt.Rd |only man/pte.Rd | 23 + man/pte_default.Rd | 16 - man/pte_emp_boot.Rd | 5 man/pte_params.Rd | 13 - man/pte_qtt.Rd |only man/qtt_empirical_bootstrap.Rd |only man/qtt_pte_aggregations.Rd | 10 man/setup_pte.Rd | 13 - man/setup_pte_basic.Rd | 13 - man/summary.pte_qtt.Rd |only man/two_by_two_rcs_subset.Rd |only tests/testthat/test-did.R | 76 +++++ 51 files changed, 1303 insertions(+), 500 deletions(-)
Title: Standardization-Based Effect Estimation with Optional Prior
Covariance Adjustment
Description: The Prognostic Regression Offsets with Propagation of
ERrors (for Treatment Effect Estimation) package facilitates
direct adjustment for experiments and observational studies that
is compatible with a range of study designs and covariance
adjustment strategies. It uses explicit specification of clusters,
blocks and treatment allocations to furnish probability of
assignment-based weights targeting any of several average
treatment effect parameters, and for standard error calculations
reflecting these design parameters. For covariance adjustment of
its Hajek and (one-way) fixed effects estimates, it enables
offsetting the outcome against predictions from a dedicated
covariance model, with standard error calculations propagating
error as appropriate from the covariance model.
Author: Josh Errickson [aut],
Josh Wasserman [cre, aut],
Mark Fredrickson [ctb],
Adam Sales [ctb],
Xinhe Wang [ctb],
Ben Hansen [aut]
Maintainer: Josh Wasserman <jwass@umich.edu>
Diff between propertee versions 1.0.5 dated 2026-04-02 and 1.0.6 dated 2026-07-20
DESCRIPTION | 18 +-- MD5 | 49 ++++---- NAMESPACE | 1 NEWS.md | 9 + R/SandwichLayer.R | 65 +++++++---- R/SandwichLayerVariance.R | 6 - R/bread.R | 4 R/cov_adj.R | 154 +++++++++++++++++++++------- R/data.R | 2 R/get_spec.R | 16 ++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/RDD.html | 12 +- inst/doc/intro-to-propertee.R | 1 inst/doc/intro-to-propertee.Rmd | 13 +- inst/doc/intro-to-propertee.html | 47 +++++--- inst/doc/non-binary-treatment.html | 4 man/GV_data.Rd | 2 man/cov_adj.Rd | 88 +++++++++------- man/default.Rd |only man/dot-check_df_moderator_estimates.Rd | 2 man/dot-update_ca_model_formula.Rd | 17 --- man/validWeights.Rd | 4 tests/testthat/test.SandwichLayer.R | 36 ++++++ tests/testthat/test.SandwichLayerVariance.R | 22 +++- vignettes/intro-to-propertee.Rmd | 13 +- 26 files changed, 396 insertions(+), 189 deletions(-)
Title: Variable Selection using the Pivotal Information Criterion
Description: Sparse regression and classification via the Pivotal
Information Criterion (PIC), an alternative to the Bayesian
Information Criterion (BIC), cross-validation, and Lasso-based
tuning. The regularization parameter is selected from a pivotal
null-distribution statistic, eliminating the need for
cross-validation and yielding sharper support recovery. Provides
Fast Iterative Shrinkage-Thresholding Algorithm (FISTA)
optimization for the L1, Smoothly Clipped Absolute Deviation
(SCAD), and Minimax Concave Penalty (MCP) penalties across six
response distributions: Gaussian, binomial, Poisson, exponential,
Gumbel, and Cox. Under standard sparsity assumptions, the
selector achieves a phase transition for exact support recovery,
analogous to results in compressed sensing. See Sardy, van Cutsem
and van de Geer (2026) <doi:10.48550/arXiv.2603.04172>.
Author: Maxime van Cutsem [aut, cre],
Sylvain Sardy [aut]
Maintainer: Maxime van Cutsem <maxime.vancutsem@unige.ch>
Diff between picreg versions 0.1.3 dated 2026-06-04 and 0.1.4 dated 2026-07-20
picreg-0.1.3/picreg/man/predict_survival_function.Rd |only picreg-0.1.4/picreg/DESCRIPTION | 8 +- picreg-0.1.4/picreg/MD5 | 31 ++++----- picreg-0.1.4/picreg/NAMESPACE | 1 picreg-0.1.4/picreg/NEWS.md | 14 ++++ picreg-0.1.4/picreg/R/methods-picr.R | 20 +++++- picreg-0.1.4/picreg/R/plots.R | 6 - picreg-0.1.4/picreg/R/survival.R | 32 +--------- picreg-0.1.4/picreg/inst/doc/vignette.R | 14 ++-- picreg-0.1.4/picreg/inst/doc/vignette.Rmd | 22 +++--- picreg-0.1.4/picreg/inst/doc/vignette.html | 17 +++-- picreg-0.1.4/picreg/man/feature_effects_on_survival.Rd | 6 - picreg-0.1.4/picreg/man/plot_survival_curves.Rd | 4 - picreg-0.1.4/picreg/man/predict.pic.Rd | 10 ++- picreg-0.1.4/picreg/tests/testthat/test-cox-feature-effects.R | 10 +-- picreg-0.1.4/picreg/tests/testthat/test-cox.R | 4 - picreg-0.1.4/picreg/vignettes/vignette.Rmd | 22 +++--- 17 files changed, 116 insertions(+), 105 deletions(-)
Title: Noncompartmental Analysis for Pharmacokinetic Report
Description: Conduct a noncompartmental analysis with industrial strength.
Some features are
1) CDISC SDTM terms
2) Automatic or manual slope selection
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
5) Produce pdf, rtf, text report files.
6) Produce Installation and Operational Qualification (IQ/OQ) reports in pdf.
After installation, qualify the package in your own environment:
run pdfIQ() for Installation Qualification and pdfOQ() for Operational
Qualification. Run writeMD5() once after installation so the IQ
file-integrity check passes. To approve a report, sign it digitally in
Adobe Acrobat Reader (generate with sigField=TRUE, or run addSigField(),
to add click-to-sign fields), instead of printing and scanning; or use
signPDF()/verifyPDF() for a scriptable signature.
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (I [...truncated...]
Author: Kyun-Seop Bae [aut, cre],
Michael E. Schaffer [ctb, cph]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between ncar versions 0.6.1 dated 2026-06-19 and 0.7.0 dated 2026-07-20
DESCRIPTION | 19 ++++++++++++++----- MD5 | 31 ++++++++++++++++++++++++++----- NAMESPACE | 12 ++++++++++-- R/QualReport.R |only R/addSigField.R |only R/pdfIQ.R |only R/pdfNCA.R | 9 ++++++++- R/pdfOQ.R |only R/pdfPQ.R |only R/signPDF.R |only R/writeMD5.R |only inst/NEWS.Rd | 12 ++++++++++++ inst/OQ |only man/addSigField.Rd |only man/pdfIQ.Rd |only man/pdfNCA.Rd | 4 +++- man/pdfOQ.Rd |only man/pdfPQ.Rd |only man/signPDF.Rd |only man/writeMD5.Rd |only 20 files changed, 73 insertions(+), 14 deletions(-)
Title: Simple and 'Scalable' Statistical Modelling in R
Description: Write statistical models in R and fit them by 'MCMC' and
optimisation on 'CPUs' and 'GPUs', using Google 'TensorFlow'. 'greta' lets
you write your own model like in 'BUGS', 'JAGS' and 'Stan', except that you
write models right in R, it scales well to massive datasets, and it’s easy
to extend and build on. See the website for more information, including
tutorials, examples, package documentation, and the 'greta' forum.
This work is discussed at Golding (2019) <doi:10.21105/joss.01601>.
Author: Nick Golding [aut, cph] ,
Nicholas Tierney [aut, cre] ,
Simon Dirmeier [ctb],
Adam Fleischhacker [ctb],
Shirin Glander [ctb],
Martin Ingram [ctb],
Lee Hazel [ctb],
Lionel Hertzog [ctb],
Tiphaine Martin [ctb],
Matt Mulvahill [ctb],
Michael Quinn [ctb] [...truncated...]
Maintainer: Nicholas Tierney <nicholas.tierney@gmail.com>
This is a re-admission after prior archival of version 0.5.0 dated 2024-11-12
Diff between greta versions 0.5.0 dated 2024-11-12 and 0.6.0 dated 2026-07-20
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Title: Fast and Beautiful Interactive Visualization Based on the 'D3'
Engine
Description: A fully FOSS alternative to 'Highcharter' based on 'D3' which provides
functions for both fast and beautiful interactive visualization for 'Markdown'
'Shiny', and 'Tabler'.
Author: Mauricio Vargas Sepulveda [aut, cre, cph] ,
John Coene [aut],
Ariel Alvarado [ctb],
Sylvain Lesage [ctb],
Curran Kelleher [ctb],
Fernando Becerra [ctb],
Natural Earth [dtc],
R Consortium [fnd]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between d3po versions 1.0.3 dated 2025-12-08 and 1.1.0 dated 2026-07-20
DESCRIPTION | 21 - MD5 | 58 +-- NAMESPACE | 1 NEWS.md | 15 + R/aes.R | 95 ++++-- R/api.R | 255 +++++++---------- R/assertions.R | 6 R/d3po-package.R | 5 R/utils.R | 4 README.md | 4 build/vignette.rds |binary inst/doc/examples.R | 524 +++++++++++++++-------------------- inst/doc/examples.Rmd | 296 ++++++++----------- inst/doc/examples.html | 583 ++++++++++++++++++--------------------- inst/htmlwidgets/d3po.yaml | 2 inst/htmlwidgets/lib/d3po.min.js | 2 man/d3po-exports.Rd | 1 man/d3po.Rd | 5 man/po_area.Rd | 9 man/po_bar.Rd | 9 man/po_box.Rd | 9 man/po_donut.Rd | 9 man/po_format.Rd | 2 man/po_geomap.Rd | 9 man/po_line.Rd | 9 man/po_network.Rd | 9 man/po_pie.Rd | 9 man/po_scatter.Rd | 9 man/po_treemap.Rd | 9 vignettes/examples.Rmd | 296 ++++++++----------- 30 files changed, 1038 insertions(+), 1227 deletions(-)
Title: Search Download and Handle Data from Copernicus Marine Service
Information
Description: Subset and download data from EU Copernicus Marine
Service Information: <https://data.marine.copernicus.eu>.
Import data on the oceans physical and biogeochemical state
from Copernicus into R without the need of external software.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between CopernicusMarine versions 0.4.7 dated 2026-07-05 and 0.4.8 dated 2026-07-20
DESCRIPTION | 10 +- MD5 | 32 +++---- NEWS.md | 9 ++ R/cms_cite_product.r | 4 R/cms_download_native.R | 25 +++-- R/cms_products_list.r | 6 - inst/doc/glossary.html | 4 inst/doc/product-info.html | 2 inst/doc/proxy.html | 2 man/cms_cite_product.Rd | 4 man/cms_download_native.Rd | 2 man/cms_native_proxy.Rd | 2 man/cms_native_s3.Rd | 2 man/cms_products_list.Rd | 6 - man/figures/logo.png |binary man/figures/logo.svg | 183 ++----------------------------------------- tests/testthat/test_native.r | 2 17 files changed, 78 insertions(+), 217 deletions(-)
More information about CopernicusMarine at CRAN
Permanent link
Title: Search Download and Handle Data from the Copernicus Data Space
Ecosystem
Description: The Copernicus Data Space Ecosystem, is an open
ecosystem that provides free instant access to a wide range
of data and services from the Copernicus Sentinel missions and
more on our planet’s land, oceans and atmosphere. This package
provides entry points to several APIs allowing users to access
the data directly in R.
Author: Pepijn de Vries [aut, cre] ,
Alicia Hamer [rtm] ,
LVVN
[fnd] ,
WMR [ctr]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between CopernicusDataspace versions 0.0.3 dated 2026-07-03 and 0.0.4 dated 2026-07-20
DESCRIPTION | 8 +- MD5 | 84 +++++++++++------------ NEWS.md | 8 ++ R/stac.R | 9 +- R/tidyverse.R | 21 ++--- inst/doc/OData.html | 16 ++-- inst/doc/STAC.html | 72 ++++++++++---------- man/CopernicusDataspace-package.Rd | 7 + man/dse_access_token.Rd | 58 +--------------- man/dse_get_token_details.Rd | 10 +- man/dse_odata_attributes.Rd | 14 +-- man/dse_odata_bursts.Rd | 24 ++---- man/dse_odata_download.Rd | 14 +-- man/dse_odata_download_path.Rd | 14 +-- man/dse_odata_product_nodes.Rd | 14 +-- man/dse_odata_products_request.Rd | 26 ++----- man/dse_odata_quicklook.Rd | 14 +-- man/dse_s3.Rd | 64 ++---------------- man/dse_s3_download.Rd | 8 +- man/dse_s3_set_gdal_options.Rd | 8 +- man/dse_s3_uri_to_vsi.Rd | 8 +- man/dse_set_gdal_token.Rd | 10 +- man/dse_sh_collections.Rd | 18 ++--- man/dse_sh_custom_scripts.Rd | 18 ++--- man/dse_sh_features.Rd | 18 ++--- man/dse_sh_get_custom_script.Rd | 18 ++--- man/dse_sh_prepare_.Rd | 28 ++----- man/dse_sh_process.Rd | 18 ++--- man/dse_sh_queryables.Rd | 18 ++--- man/dse_sh_search_request.Rd | 22 +++--- man/dse_sh_use_requests_builder.Rd | 18 ++--- man/dse_stac_client.Rd | 14 +-- man/dse_stac_collections.Rd | 18 ++--- man/dse_stac_download.Rd | 14 +-- man/dse_stac_get_uri.Rd | 14 +-- man/dse_stac_guess_collection.Rd | 14 +-- man/dse_stac_queryables.Rd | 14 +-- man/dse_stac_search_request.Rd | 16 ++-- man/dse_usage.Rd | 16 +--- man/figures/logo.svg | 131 ------------------------------------- man/req_perform.Rd | 2 man/tidy_verbs.Rd | 40 +---------- tests/testthat/test-sentinelhub.R | 11 +-- 43 files changed, 367 insertions(+), 624 deletions(-)
More information about CopernicusDataspace at CRAN
Permanent link
Title: Search Download and Handle Data from Copernicus Climate Data
Service
Description: Subset and download data from EU Copernicus Climate Data Service:
<https://cds.climate.copernicus.eu/>. Import information about the Earth's
past, present and future climate from Copernicus into R without the need of
external software.
Author: Pepijn de Vries [aut, cre]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between CopernicusClimate versions 0.0.5 dated 2026-01-07 and 0.0.6 dated 2026-07-20
DESCRIPTION | 8 MD5 | 78 ++++---- NEWS.md | 10 + R/catalogue.R | 4 R/cite.R | 1 R/jobs.R | 3 R/python.R | 8 R/retrieve.R | 13 - R/stars.R | 3 R/token.R | 4 build/vignette.rds |binary inst/doc/download.R | 94 ++++++--- inst/doc/download.Rmd | 94 ++++++--- inst/doc/download.html | 303 +++++++++++++++++--------------- man/CopernicusClimate-package.Rd | 7 man/cds_accept_licence.Rd | 6 man/cds_accepted_licences.Rd | 6 man/cds_account_metrics.Rd | 7 man/cds_build_request.Rd | 8 man/cds_catalogue_vocabulary.Rd | 6 man/cds_check_authentication.Rd | 7 man/cds_cite_dataset.Rd | 8 man/cds_dataset_form.Rd | 8 man/cds_delete_job.Rd | 8 man/cds_download_jobs.Rd | 8 man/cds_estimate_costs.Rd | 8 man/cds_get_account.Rd | 7 man/cds_get_token.Rd | 7 man/cds_job_results.Rd | 8 man/cds_list_jobs.Rd | 8 man/cds_list_licences.Rd | 6 man/cds_python_to_r.Rd | 8 man/cds_search_datasets.Rd | 6 man/cds_starred.Rd | 6 man/cds_submit_job.Rd | 8 man/figures/logo.png |binary man/figures/logo.svg | 369 --------------------------------------- tests/testthat/test-cite.R | 1 tests/testthat/test-download.R | 2 vignettes/download.Rmd | 94 ++++++--- 40 files changed, 577 insertions(+), 663 deletions(-)
More information about CopernicusClimate at CRAN
Permanent link
Title: Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
Description: Contains several basic utility functions including: moving
(rolling, running) window statistic functions, read/write for
GIF and ENVI binary files, fast calculation of AUC, LogitBoost
classifier, base64 encoder/decoder, round-off-error-free sum
and cumsum, etc.
Author: Jarek Tuszynski [aut],
Michael Dietze [cre]
Maintainer: Michael Dietze <michael.dietze@geo.rwth-aachen.de>
Diff between caTools versions 1.18.3 dated 2024-09-04 and 1.18.4 dated 2026-07-20
CHANGES | 4 DESCRIPTION | 12 - MD5 | 14 - NAMESPACE | 22 ++ NEWS | 3 man/base64.Rd | 8 man/colAUC.Rd | 2 man/runquantile.Rd | 506 ++++++++++++++++++++++++++--------------------------- 8 files changed, 297 insertions(+), 274 deletions(-)
Title: Karl Broman's R Code
Description: Miscellaneous R functions, including functions related to
graphics (mostly for base graphics), permutation tests, running
mean/median, and general utilities.
Author: Karl W Broman [aut, cre] ,
Aimee Teo Broman [ctb]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between broman versions 0.96 dated 2026-06-23 and 0.98 dated 2026-07-20
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS.md | 6 ++++++ R/jiggle.R | 4 ++-- data/numbers-cap.RData |binary data/numbers.RData |binary tests/testthat/test-jiggle.R |only 7 files changed, 18 insertions(+), 11 deletions(-)
Title: Probabilistic Numerical Modelling of Sediment Properties
Description: A flexible framework for definition and application of time/depth-
based rules for sets of parameters for single grains that can be used to
create artificial sediment profiles. Such profiles can be used for virtual
sample preparation and synthetic, for instance, luminescence measurements.
Author: Michael Dietze [aut, cre] ,
Sebastian Kreutzer [aut]
Maintainer: Michael Dietze <michael.dietze@geo.rwth-aachen.de>
Diff between sandbox versions 0.2.2 dated 2025-08-21 and 0.2.3 dated 2026-07-20
DESCRIPTION | 14 +++++++------- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Many Ways to Make, Manipulate, and Modify Myriad Networks
Description: Many tools for making, manipulating, and modifying many different types of networks.
All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
on directed, multiplex, multimodal, signed, and other networks.
The package includes functions for importing and exporting, creating and generating networks,
modifying networks and node and tie attributes,
and describing networks with sensible defaults.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Christian Steglich [ctb],
Alvaro Uzaheta [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manynet versions 2.1.4 dated 2026-06-29 and 2.2.1 dated 2026-07-20
manynet-2.1.4/manynet/inst/tutorials/tutorial1 |only manynet-2.1.4/manynet/man/make_motifs.Rd |only manynet-2.2.1/manynet/DESCRIPTION | 6 manynet-2.2.1/manynet/MD5 | 201 ++- manynet-2.2.1/manynet/NAMESPACE | 70 - manynet-2.2.1/manynet/NEWS.md | 113 ++ manynet-2.2.1/manynet/R/class_describe.R | 21 manynet-2.2.1/manynet/R/class_interface.R | 2 manynet-2.2.1/manynet/R/class_marks.R | 2 manynet-2.2.1/manynet/R/class_measures.R | 4 manynet-2.2.1/manynet/R/class_members.R | 2 manynet-2.2.1/manynet/R/class_models.R | 2 manynet-2.2.1/manynet/R/class_motifs.R | 4 manynet-2.2.1/manynet/R/class_networks.R | 8 manynet-2.2.1/manynet/R/class_stocnet.R | 14 manynet-2.2.1/manynet/R/class_validate.R | 7 manynet-2.2.1/manynet/R/coerce_graph.R | 542 +++++++++- manynet-2.2.1/manynet/R/coerce_list.R | 8 manynet-2.2.1/manynet/R/make_collect.R | 6 manynet-2.2.1/manynet/R/make_create.R | 89 - manynet-2.2.1/manynet/R/make_generate.R | 8 manynet-2.2.1/manynet/R/make_play.R | 22 manynet-2.2.1/manynet/R/make_read.R | 103 + manynet-2.2.1/manynet/R/manip_changes.R | 38 manynet-2.2.1/manynet/R/manip_nodes.R | 42 manynet-2.2.1/manynet/R/manip_ties.R | 44 manynet-2.2.1/manynet/R/manynet-defunct.R | 25 manynet-2.2.1/manynet/R/manynet-glossary.R | 19 manynet-2.2.1/manynet/R/mark_format.R | 8 manynet-2.2.1/manynet/R/measure_attributes.R | 16 manynet-2.2.1/manynet/R/measure_properties.R | 118 +- manynet-2.2.1/manynet/R/modif_from.R | 44 manynet-2.2.1/manynet/R/modif_labels.R | 56 - manynet-2.2.1/manynet/R/modif_motifs.R |only manynet-2.2.1/manynet/R/modif_paths.R | 108 + manynet-2.2.1/manynet/R/modif_plexity.R | 2 manynet-2.2.1/manynet/R/modif_project.R | 23 manynet-2.2.1/manynet/R/modif_scope.R | 16 manynet-2.2.1/manynet/R/modif_split.R | 2 manynet-2.2.1/manynet/README.md | 23 manynet-2.2.1/manynet/inst/figures |only manynet-2.2.1/manynet/inst/tutorials/manynet1 |only manynet-2.2.1/manynet/inst/tutorials/manynet2 |only manynet-2.2.1/manynet/man/coerce_graph.Rd | 21 manynet-2.2.1/manynet/man/defunct.Rd | 5 manynet-2.2.1/manynet/man/fict_actually.Rd | 5 manynet-2.2.1/manynet/man/fict_marvel.Rd | 2 manynet-2.2.1/manynet/man/figures/cheatsheet.png |only manynet-2.2.1/manynet/man/irps_911.Rd | 4 manynet-2.2.1/manynet/man/ison_adolescents.Rd | 2 manynet-2.2.1/manynet/man/ison_algebra.Rd | 4 manynet-2.2.1/manynet/man/ison_hightech.Rd | 4 manynet-2.2.1/manynet/man/ison_lawfirm.Rd | 4 manynet-2.2.1/manynet/man/ison_monks.Rd | 3 manynet-2.2.1/manynet/man/ison_physicians.Rd | 16 manynet-2.2.1/manynet/man/make_cran.Rd | 1 manynet-2.2.1/manynet/man/make_create.Rd | 1 manynet-2.2.1/manynet/man/make_ego.Rd | 1 manynet-2.2.1/manynet/man/make_explicit.Rd | 1 manynet-2.2.1/manynet/man/make_learning.Rd | 1 manynet-2.2.1/manynet/man/make_play.Rd | 1 manynet-2.2.1/manynet/man/make_random.Rd | 1 manynet-2.2.1/manynet/man/make_read.Rd | 1 manynet-2.2.1/manynet/man/make_stochastic.Rd | 1 manynet-2.2.1/manynet/man/make_stocnet.Rd | 14 manynet-2.2.1/manynet/man/make_write.Rd | 13 manynet-2.2.1/manynet/man/manip_changes.Rd | 2 manynet-2.2.1/manynet/man/manip_nodes_attr.Rd | 19 manynet-2.2.1/manynet/man/manip_ties_attr.Rd | 21 manynet-2.2.1/manynet/man/measure_attributes_nodes.Rd | 7 manynet-2.2.1/manynet/man/measure_dims.Rd | 27 manynet-2.2.1/manynet/man/modif_correlation.Rd | 1 manynet-2.2.1/manynet/man/modif_direction.Rd | 1 manynet-2.2.1/manynet/man/modif_from.Rd | 1 manynet-2.2.1/manynet/man/modif_labels.Rd | 17 manynet-2.2.1/manynet/man/modif_levels.Rd | 1 manynet-2.2.1/manynet/man/modif_miss.Rd | 1 manynet-2.2.1/manynet/man/modif_motifs.Rd |only manynet-2.2.1/manynet/man/modif_paths.Rd | 1 manynet-2.2.1/manynet/man/modif_permutation.Rd | 1 manynet-2.2.1/manynet/man/modif_plexity.Rd | 1 manynet-2.2.1/manynet/man/modif_project.Rd | 1 manynet-2.2.1/manynet/man/modif_scope.Rd | 11 manynet-2.2.1/manynet/man/modif_split.Rd | 1 manynet-2.2.1/manynet/man/modif_weight.Rd | 1 manynet-2.2.1/manynet/man/progress.Rd | 2 manynet-2.2.1/manynet/tests/testthat/helper-functional.R |only manynet-2.2.1/manynet/tests/testthat/helper-manynet.R | 107 + manynet-2.2.1/manynet/tests/testthat/test-coercion.R | 115 ++ manynet-2.2.1/manynet/tests/testthat/test-functional_from.R |only manynet-2.2.1/manynet/tests/testthat/test-functional_lists.R |only manynet-2.2.1/manynet/tests/testthat/test-functional_makes.R |only manynet-2.2.1/manynet/tests/testthat/test-functional_manips.R |only manynet-2.2.1/manynet/tests/testthat/test-functional_marks.R |only manynet-2.2.1/manynet/tests/testthat/test-functional_measures.R |only manynet-2.2.1/manynet/tests/testthat/test-functional_prints.R |only manynet-2.2.1/manynet/tests/testthat/test-functional_to.R |only manynet-2.2.1/manynet/tests/testthat/test-make_create.R | 24 manynet-2.2.1/manynet/tests/testthat/test-make_generate.R | 23 manynet-2.2.1/manynet/tests/testthat/test-make_read.R | 3 manynet-2.2.1/manynet/tests/testthat/test-manip_add.R | 27 manynet-2.2.1/manynet/tests/testthat/test-manip_grab.R | 24 manynet-2.2.1/manynet/tests/testthat/test-manip_transform.R | 14 manynet-2.2.1/manynet/tests/testthat/test-to_motifs.R |only manynet-2.2.1/manynet/tests/testthat/test-tutorials_manynet.R |only 105 files changed, 1820 insertions(+), 558 deletions(-)
Title: End-Member Modelling of Grain-Size Data
Description: End-member modelling analysis of grain-size data is an approach
to unmix a data set's underlying distributions and their contribution to
the data set. EMMAgeo provides deterministic and robust protocols for
that purpose.
Author: Michael Dietze [cre, aut, trl],
Elisabeth Dietze [ctb]
Maintainer: Michael Dietze <michael.dietze@geo.rwth-aachen.de>
Diff between EMMAgeo versions 0.9.9 dated 2025-06-28 and 0.9.10 dated 2026-07-20
DESCRIPTION | 14 +++++++------- MD5 | 2 +- 2 files changed, 8 insertions(+), 8 deletions(-)
Title: Continuous Time Meta-Analysis ('CoTiMA')
Description: The 'CoTiMA' package performs meta-analyses of correlation matrices of repeatedly measured variables taken from
studies that used different time intervals. Different time intervals between measurement occasions impose problems for
meta-analyses because the effects (e.g. cross-lagged effects) cannot be simply aggregated, for example, by means of common
fixed or random effects analysis. However, continuous time math, which is applied in 'CoTiMA', can be used to extrapolate or
intrapolate the results from all studies to any desired time lag. By this, effects obtained in studies that used different
time intervals can be meta-analyzed. 'CoTiMA' fits models to empirical data using the structural equation model (SEM) package
'ctsem', the effects specified in a SEM are related to parameters that are not directly included in the model (i.e.,
continuous time parameters; together, they represent the continuous time structural equation model, CTSEM). Statistical
model comparisons and significance [...truncated...]
Author: Christian Dormann [aut, cph],
Markus Homberg [aut, com, cre],
Olga Diener [ctb],
Christina Guthier [ctb],
Manuel Voelkle [ctb]
Maintainer: Markus Homberg <cotima@uni-mainz.de>
Diff between CoTiMA versions 1.0.2 dated 2025-08-22 and 1.0.3 dated 2026-07-20
DESCRIPTION | 16 MD5 | 52 +- NAMESPACE | 5 R/ctmaAllInvFit.R | 2 R/ctmaBiG.R | 6 R/ctmaEqual.R | 6 R/ctmaExtract.R |only R/ctmaFit.R | 990 +++++++++++++++++++++++++--------------------- R/ctmaGenData.R | 772 ++++++++++++++++++++++++----------- R/ctmaGetPub.R | 2 R/ctmaInit.R | 239 +++++++++-- R/ctmaOptimizeFit.R | 26 - R/ctmaPRaw.R | 13 R/ctmaPlot.R | 81 +++ R/ctmaPlotCtsemMod.R | 98 ++++ R/ctmaPower.R | 100 ++-- R/ctmaPrep.R | 3 R/ctmaStanctArgs.R | 8 data/CoTiMAStanctArgs.rda |binary man/CoTiMAStanctArgs.Rd | 3 man/ctmaExtract.Rd |only man/ctmaFit.Rd | 15 man/ctmaGenData.Rd | 35 + man/ctmaGetPub.Rd | 2 man/ctmaInit.Rd | 8 man/ctmaPRaw.Rd | 2 man/ctmaPlotCtsemMod.Rd | 5 man/ctmaPower.Rd | 2 28 files changed, 1611 insertions(+), 880 deletions(-)
Title: Convert Gene IDs Between Each Other and Fetch Annotations from
Biomart
Description: Gene Symbols or Ensembl Gene IDs are converted using the Bimap interface in 'AnnotationDbi' in convertId2()
for the most common use cases in data analysis. The main function in the package is convert.bm() which queries BioMart
using the full capacity of the API provided through the 'biomaRt' package. Presets and defaults are provided for
convenience but all "marts", "filters" and "attributes" can be set by the user. Function convert.alias() converts
Gene Symbols to Aliases and vice versa and function likely_symbol() attempts to determine the most likely current Gene Symbol.
Author: Vidal Fey [aut, cre],
Henrik Edgren [aut]
Maintainer: Vidal Fey <vidal.fey@gmail.com>
Diff between convertid versions 0.3.0 dated 2026-04-01 and 0.3.4 dated 2026-07-20
DESCRIPTION | 21 - MD5 | 26 + NAMESPACE | 1 R/convertId2.R | 484 ++++++++++++++++++----------------- R/get.bm.R |only R/unexported.R | 153 +++++++++++ R/unify_gene_ids.R | 24 - man/convert.bm.Rd | 10 man/convertId2.Rd | 87 +++++- man/convertid.Rd | 15 - man/dot-chunked_getBM.Rd |only man/dot-connect_mart.Rd |only man/dot-with_biomart_fallback.Rd |only man/get.bm.Rd | 12 man/try_biomart.Rd |only tests/testthat/test-convertId2.R |only tests/testthat/test-unify_gene_ids.R | 52 +++ 17 files changed, 588 insertions(+), 297 deletions(-)
Title: Continuous Norming
Description: Generates continuous test norms in
psychometrics and biometrics, and analyzing model fit. The package offers
both distribution-free modeling using Taylor polynomials and parametric
modeling using the beta-binomial and the 'Sinh-Arcsinh' distribution.
Originally developed for achievement tests, it is applicable to a wide
range of mental, physical, or other test scores dependent on continuous or
discrete explanatory variables. The package provides several advantages:
It minimizes deviations from representativeness in subsamples, interpolates
between discrete levels of explanatory variables, and significantly reduces
the required sample size compared to conventional norming per age group.
cNORM enables graphical and analytical evaluation of model fit,
accommodates a wide range of scales including those with negative and
descending values, and as well supports conventional norming. It generates
norm tables including confidence intervals. Methods for addressing
representativeness issues are [...truncated...]
Author: Alexandra Lenhard [aut] ,
Wolfgang Lenhard [cre, aut] ,
Sebastian Gary [aut],
WPS Publisher [fnd]
Maintainer: Wolfgang Lenhard <wolfgang.lenhard@uni-wuerzburg.de>
Diff between cNORM versions 3.6.1 dated 2026-07-13 and 3.6.2 dated 2026-07-20
cNORM-3.6.1/cNORM/man/subsample_lm.Rd |only cNORM-3.6.2/cNORM/DESCRIPTION | 10 cNORM-3.6.2/cNORM/MD5 | 86 +- cNORM-3.6.2/cNORM/NAMESPACE | 8 cNORM-3.6.2/cNORM/NEWS.md | 46 + cNORM-3.6.2/cNORM/R/betaBinomial.R | 365 +++++++- cNORM-3.6.2/cNORM/R/cNORM.R | 18 cNORM-3.6.2/cNORM/R/modelling.R | 349 +++++--- cNORM-3.6.2/cNORM/R/moments.R |only cNORM-3.6.2/cNORM/R/shash.R | 856 ++++++++++++--------- cNORM-3.6.2/cNORM/README.md | 6 cNORM-3.6.2/cNORM/inst/doc/BetaBinomial.R | 6 cNORM-3.6.2/cNORM/inst/doc/BetaBinomial.Rmd | 16 cNORM-3.6.2/cNORM/inst/doc/BetaBinomial.html | 77 - cNORM-3.6.2/cNORM/inst/doc/WeightedRegression.html | 41 - cNORM-3.6.2/cNORM/inst/doc/cNORM-Demo.html | 192 ++-- cNORM-3.6.2/cNORM/inst/doc/sinh.html | 58 - cNORM-3.6.2/cNORM/man/bb_prepare_data.Rd | 5 cNORM-3.6.2/cNORM/man/bb_resolve_scale.Rd | 2 cNORM-3.6.2/cNORM/man/bestModel.Rd | 6 cNORM-3.6.2/cNORM/man/betaCoefficients.Rd | 8 cNORM-3.6.2/cNORM/man/cNORM.Rd | 9 cNORM-3.6.2/cNORM/man/checkConsistency.Rd | 12 cNORM-3.6.2/cNORM/man/cnorm.betabinomial.Rd | 33 cNORM-3.6.2/cNORM/man/cnorm.betabinomial1.Rd | 7 cNORM-3.6.2/cNORM/man/cnorm.betabinomial2.Rd | 9 cNORM-3.6.2/cNORM/man/cnorm.shash.Rd | 43 - cNORM-3.6.2/cNORM/man/diagnostics.betabinomial.Rd | 11 cNORM-3.6.2/cNORM/man/diagnostics.shash.Rd | 2 cNORM-3.6.2/cNORM/man/gradient_log_likelihood.Rd |only cNORM-3.6.2/cNORM/man/gradient_log_likelihood2.Rd |only cNORM-3.6.2/cNORM/man/gradient_shash.Rd |only cNORM-3.6.2/cNORM/man/log_likelihood_shash.Rd | 5 cNORM-3.6.2/cNORM/man/normTable.shash.Rd | 14 cNORM-3.6.2/cNORM/man/plot.cnormBetaBinomial2.Rd | 5 cNORM-3.6.2/cNORM/man/plot.cnormShash.Rd | 4 cNORM-3.6.2/cNORM/man/predict.cnormBetaBinomial.Rd | 3 cNORM-3.6.2/cNORM/man/predict.cnormShash.Rd | 8 cNORM-3.6.2/cNORM/man/predictMoments.Rd |only cNORM-3.6.2/cNORM/man/print.cnormShash.Rd | 4 cNORM-3.6.2/cNORM/man/shash.Rd | 16 cNORM-3.6.2/cNORM/man/summary.cnormBetaBinomial.Rd | 3 cNORM-3.6.2/cNORM/man/summary.cnormShash.Rd | 4 cNORM-3.6.2/cNORM/man/taylorSwift.Rd | 8 cNORM-3.6.2/cNORM/tests/testthat/test.modelling.R | 14 cNORM-3.6.2/cNORM/vignettes/BetaBinomial.Rmd | 16 cNORM-3.6.2/cNORM/vignettes/beta.png |binary 47 files changed, 1503 insertions(+), 882 deletions(-)
Title: Canonical Correlations and Tests of Independence
Description: A simple interface for multivariate correlation analysis that unifies various classical
statistical procedures including t-tests, tests in univariate and multivariate linear models,
parametric and nonparametric tests for correlation, Kruskal-Wallis tests, common approximate
versions of Wilcoxon rank-sum and signed rank tests, chi-squared tests of independence, score
tests of particular hypotheses in generalized linear models, canonical correlation analysis and
linear discriminant analysis.
Author: Robert Schlicht [aut, cre]
Maintainer: Robert Schlicht <robert.schlicht@tu-dresden.de>
Diff between cctest versions 2.3.3 dated 2026-04-23 and 2.3.4 dated 2026-07-20
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/cctest.R | 2 +- build/partial.rdb |binary man/cctest.Rd | 28 ++++++++++++++-------------- 5 files changed, 22 insertions(+), 22 deletions(-)
Title: 'GitHub' 'API'
Description: Minimal client to access the 'GitHub' 'API'.
Author: Gabor Csardi [cre, ctb],
Jennifer Bryan [aut],
Hadley Wickham [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between gh versions 1.6.0 dated 2026-05-29 and 1.6.1 dated 2026-07-20
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/gh.R | 32 ++++++++++++++++++++++++-------- build/vignette.rds |binary tests/testthat/test-pagination.R | 33 +++++++++++++++++++++++++++++++++ 6 files changed, 70 insertions(+), 16 deletions(-)
Title: R Bindings to the 'Anime.js' Animation Library
Description: Provides low-level R bindings to the 'Anime.js' library
(<https://animejs.com>), enabling the creation of browser-native SVG
and HTML animations via the 'htmlwidgets' framework.
Author: Long Nguyen [aut, cre]
Maintainer: Long Nguyen <nguyen@dezim-institut.de>
Diff between animejs versions 0.1.0 dated 2026-03-26 and 1.0.0 dated 2026-07-20
animejs-0.1.0/animejs/man/stagger_to_js.Rd |only animejs-0.1.0/animejs/man/timeline_to_json_config.Rd |only animejs-0.1.0/animejs/man/to_js_props.Rd |only animejs-0.1.0/animejs/man/validate_duration.Rd |only animejs-1.0.0/animejs/DESCRIPTION | 13 animejs-1.0.0/animejs/MD5 | 113 +- animejs-1.0.0/animejs/NAMESPACE | 4 animejs-1.0.0/animejs/NEWS.md | 68 + animejs-1.0.0/animejs/R/animate.R |only animejs-1.0.0/animejs/R/animejs-package.R | 14 animejs-1.0.0/animejs/R/animejs.R | 54 - animejs-1.0.0/animejs/R/easing.R | 131 --- animejs-1.0.0/animejs/R/events.R | 38 animejs-1.0.0/animejs/R/playback.R | 80 + animejs-1.0.0/animejs/R/props.R | 47 - animejs-1.0.0/animejs/R/shiny.R |only animejs-1.0.0/animejs/R/stagger.R | 55 + animejs-1.0.0/animejs/R/targets.R | 34 animejs-1.0.0/animejs/R/timeline.R | 36 animejs-1.0.0/animejs/R/utils.R | 400 ++++++--- animejs-1.0.0/animejs/README.md | 20 animejs-1.0.0/animejs/build/vignette.rds |binary animejs-1.0.0/animejs/inst/doc/animejs.R | 44 - animejs-1.0.0/animejs/inst/doc/animejs.Rmd | 121 ++ animejs-1.0.0/animejs/inst/doc/animejs.html | 510 +++++++----- animejs-1.0.0/animejs/inst/htmlwidgets/animejs.css | 4 animejs-1.0.0/animejs/inst/htmlwidgets/animejs.js | 233 +++-- animejs-1.0.0/animejs/inst/htmlwidgets/animejs.yaml | 4 animejs-1.0.0/animejs/inst/htmlwidgets/lib/anime.esm.min.js | 85 +- animejs-1.0.0/animejs/man/anime_add.Rd | 5 animejs-1.0.0/animejs/man/anime_animate.Rd |only animejs-1.0.0/animejs/man/anime_easing.Rd | 22 animejs-1.0.0/animejs/man/anime_from_to.Rd | 9 animejs-1.0.0/animejs/man/anime_keyframes.Rd | 9 animejs-1.0.0/animejs/man/anime_on.Rd | 19 animejs-1.0.0/animejs/man/anime_playback.Rd | 41 animejs-1.0.0/animejs/man/anime_render.Rd | 19 animejs-1.0.0/animejs/man/anime_stagger.Rd | 17 animejs-1.0.0/animejs/man/anime_target_id.Rd | 4 animejs-1.0.0/animejs/man/anime_target_layer.Rd | 10 animejs-1.0.0/animejs/man/anime_timeline.Rd | 7 animejs-1.0.0/animejs/man/animejs-package.Rd | 14 animejs-1.0.0/animejs/man/animejs-shiny.Rd |only animejs-1.0.0/animejs/man/animejs_widget.Rd | 18 animejs-1.0.0/animejs/tests/testthat/_snaps |only animejs-1.0.0/animejs/tests/testthat/test-animate.R |only animejs-1.0.0/animejs/tests/testthat/test-easing.R | 226 ++--- animejs-1.0.0/animejs/tests/testthat/test-events.R | 32 animejs-1.0.0/animejs/tests/testthat/test-playback.R | 47 + animejs-1.0.0/animejs/tests/testthat/test-props.R | 32 animejs-1.0.0/animejs/tests/testthat/test-render.R | 66 + animejs-1.0.0/animejs/tests/testthat/test-shiny.R |only animejs-1.0.0/animejs/tests/testthat/test-stagger.R | 43 - animejs-1.0.0/animejs/tests/testthat/test-targets.R | 32 animejs-1.0.0/animejs/tests/testthat/test-timeline.R | 33 animejs-1.0.0/animejs/tests/testthat/test-utils.R | 154 +-- animejs-1.0.0/animejs/tests/testthat/test-widget.R | 19 animejs-1.0.0/animejs/vignettes/animejs.Rmd | 121 ++ 58 files changed, 2054 insertions(+), 1053 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Evaluates R expressions asynchronously and in parallel,
locally or distributed across networks. An official parallel cluster
type for R. Built on 'nanonext' and 'NNG', its non-polling,
event-driven architecture scales from a laptop to thousands of
processes across high-performance computing clusters and cloud
platforms. Features FIFO scheduling with task cancellation and bounded
queues, promises for reactive programming, 'OpenTelemetry' distributed
tracing, and custom serialization for cross-language data types.
Author: Charlie Gao [aut, cre] ,
Joe Cheng [ctb],
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between mirai versions 2.7.1 dated 2026-06-01 and 2.7.2 dated 2026-07-20
mirai-2.7.1/mirai/man/figures/logo.png |only mirai-2.7.2/mirai/DESCRIPTION | 14 - mirai-2.7.2/mirai/LICENSE | 2 mirai-2.7.2/mirai/MD5 | 76 ++++----- mirai-2.7.2/mirai/NAMESPACE | 102 +++++------- mirai-2.7.2/mirai/NEWS.md | 16 + mirai-2.7.2/mirai/R/daemon.R | 8 mirai-2.7.2/mirai/R/daemons.R | 7 mirai-2.7.2/mirai/R/launchers.R | 54 +++--- mirai-2.7.2/mirai/R/map.R | 71 +++++--- mirai-2.7.2/mirai/R/mirai-package.R | 8 mirai-2.7.2/mirai/R/mirai.R | 77 +++++---- mirai-2.7.2/mirai/R/otel.R | 4 mirai-2.7.2/mirai/R/promises.R | 10 - mirai-2.7.2/mirai/README.md | 58 ++++--- mirai-2.7.2/mirai/build/vignette.rds |binary mirai-2.7.2/mirai/inst/doc/mirai.html | 20 +- mirai-2.7.2/mirai/inst/doc/v01-reference.Rmd | 159 ++++++++++--------- mirai-2.7.2/mirai/inst/doc/v01-reference.html | 177 +++++++++++----------- mirai-2.7.2/mirai/inst/doc/v02-promises.Rmd | 38 ++-- mirai-2.7.2/mirai/inst/doc/v02-promises.html | 58 +++---- mirai-2.7.2/mirai/inst/doc/v03-serialization.Rmd | 50 +++--- mirai-2.7.2/mirai/inst/doc/v03-serialization.html | 70 ++++---- mirai-2.7.2/mirai/inst/doc/v04-parallel.html | 20 +- mirai-2.7.2/mirai/inst/doc/v05-opentelemetry.html | 18 +- mirai-2.7.2/mirai/inst/doc/v06-packages.Rmd | 18 +- mirai-2.7.2/mirai/inst/doc/v06-packages.html | 38 ++-- mirai-2.7.2/mirai/inst/doc/v07-questions.Rmd | 22 +- mirai-2.7.2/mirai/inst/doc/v07-questions.html | 41 ++--- mirai-2.7.2/mirai/inst/skills/mirai/SKILL.md | 8 mirai-2.7.2/mirai/man/figures/architecture.svg | 90 ----------- mirai-2.7.2/mirai/man/figures/logo.svg |only mirai-2.7.2/mirai/man/http_config.Rd | 26 ++- mirai-2.7.2/mirai/man/mirai.Rd | 2 mirai-2.7.2/mirai/tests/tests.R | 60 ++++++- mirai-2.7.2/mirai/vignettes/v01-reference.Rmd | 159 ++++++++++--------- mirai-2.7.2/mirai/vignettes/v02-promises.Rmd | 38 ++-- mirai-2.7.2/mirai/vignettes/v03-serialization.Rmd | 50 +++--- mirai-2.7.2/mirai/vignettes/v06-packages.Rmd | 18 +- mirai-2.7.2/mirai/vignettes/v07-questions.Rmd | 22 +- 40 files changed, 905 insertions(+), 804 deletions(-)
Title: Metabolic Pathway Completeness and Abundance Calculation
Description: Provides tools for analyzing metabolic pathway completeness, abundance, and transcripts
using KEGG Orthology (KO) data from (meta)genomic and (meta)transcriptomic studies.
Supports both completeness (presence/absence) and abundance-weighted analyses.
Includes built-in KEGG reference datasets. For more details see Li et al. (2023) <doi:10.1038/s41467-023-42193-7>.
Author: Liuyang Li [aut, cre]
Maintainer: Liuyang Li <cyanobacteria@yeah.net>
Diff between mclink versions 1.1.1 dated 2025-10-26 and 1.1.2 dated 2026-07-20
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/create_sub_module_sample.R | 3 ++- R/process_all_pathways.R | 3 +-- 5 files changed, 15 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-01 0.1.0
Title: Noncompartmental Analysis for Pharmacokinetic Data
Description: Conduct a noncompartmental analysis with industrial strength.
Some features are
1) Use of CDISC SDTM terms
2) Automatic or manual slope selection
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
5) Installation/Operational Qualification (IQ/OQ) reports in pdf.
After installation, qualify the package in your own environment:
run IQNCA() for Installation Qualification and OQNCA() for Operational
Qualification. Run writeMD5NCA() once after installation so the IQ
file-integrity check passes. To approve a report, sign it digitally in
Adobe Acrobat Reader (generate with sigField=TRUE, or run
addSigFieldNCA(), to add click-to-sign fields), instead of printing and
scanning; or use signPDFNCA()/verifyPDFNCA() for a scriptable signature.
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut, cre]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between NonCompart versions 0.8.1 dated 2026-06-21 and 0.8.2 dated 2026-07-20
NonCompart-0.8.1/NonCompart/inst/doc |only NonCompart-0.8.2/NonCompart/DESCRIPTION | 8 ++++---- NonCompart-0.8.2/NonCompart/MD5 | 16 +++++++++------- NonCompart-0.8.2/NonCompart/NAMESPACE | 2 +- NonCompart-0.8.2/NonCompart/R/AUC.R | 2 +- NonCompart-0.8.2/NonCompart/R/LogAUC.R | 2 +- NonCompart-0.8.2/NonCompart/R/PQNCA.R |only NonCompart-0.8.2/NonCompart/R/sNCA.R | 2 +- NonCompart-0.8.2/NonCompart/inst/NEWS.Rd | 9 ++++++++- NonCompart-0.8.2/NonCompart/inst/extdoc |only NonCompart-0.8.2/NonCompart/man/PQNCA.Rd |only 11 files changed, 25 insertions(+), 16 deletions(-)