Title: Information Assessment for Individual Modalities in Multimodal
Regression Models
Description: Provides methods for quantifying the information gain contributed by individual
modalities in multimodal regression models. Information gain is measured using Expected
Relative Entropy (ERE) or pseudo-R² metrics, with corresponding confidence
intervals. Currently supports linear regression, logistic regression, and the Cox proportional
hazards model. A robust Median-of-Means based estimator is also provided
for heavy-tailed responses under the Gaussian and Negative-Binomial families, with basic
bootstrap confidence intervals.
Author: Wanting Jin [aut, cre],
Quefeng Li [aut]
Maintainer: Wanting Jin <jinwanting5@gmail.com>
Diff between multiModTest versions 1.0 dated 2025-09-03 and 1.1 dated 2026-07-31
DESCRIPTION | 18 +-- MD5 | 20 ++- NAMESPACE | 4 NEWS.md |only R/SIS_subfuns.R | 160 +++++++++++++++++++++++++++- R/data_simu.R | 39 ++++++ R/mglm_subfuns.R | 56 +++++++-- R/mom_subfuns.R |only R/multiModTest.R | 272 +++++++++++++++++++++++++++++++++++++++++------- data/data_cox_model.rda |only data/data_nb_model.rda |only man/data_cox_model.Rd |only man/data_nb_model.Rd |only man/mglm.test.Rd | 90 +++++++++++++-- 14 files changed, 577 insertions(+), 82 deletions(-)
Title: Analysis of Check-All-that-Apply (CATA) Data
Description: Package contains functions for analyzing check-all-that-apply (CATA) data from consumer and sensory tests. Cochran's Q test, McNemar's test, and Penalty-Lift analysis are provided; for details, see Meyners, Castura & Carr (2013) <doi:10.1016/j.foodqual.2013.06.010>. Cluster analysis can be performed using b-cluster analysis, then evaluated using various measures; for details, see Castura, Meyners, Varela & Næs (2022) <doi:10.1016/j.foodqual.2022.104564>. Consumers can also be clustered on their product-related hedonic responses; see Castura, Meyners, Pohjanheimo, Varela & Næs (2023) <doi:10.1111/joss.12860>. Permutation tests based on the L1-norm methods are provided; for details, see Chaya, Castura & Greenacre (2025) <doi:10.1016/j.foodqual.2025.105639>.
Author: J.C. Castura [aut, cre, ctb]
Maintainer: J.C. Castura <jcastura@compusense.com>
Diff between cata versions 0.1.1.2 dated 2025-09-11 and 0.1.2.0 dated 2026-07-31
cata-0.1.1.2/cata/man/toMatrix.Rd |only cata-0.1.2.0/cata/DESCRIPTION | 12 cata-0.1.2.0/cata/MD5 | 44 +- cata-0.1.2.0/cata/NAMESPACE | 3 cata-0.1.2.0/cata/NEWS.md |only cata-0.1.2.0/cata/R/bcluster.R | 512 ++++++++++++++----------------- cata-0.1.2.0/cata/R/cata.R | 302 +++++++++++------- cata-0.1.2.0/cata/R/evalClusterQuality.R | 226 ++++--------- cata-0.1.2.0/cata/R/getb.R | 46 -- cata-0.1.2.0/cata/R/helper.R | 12 cata-0.1.2.0/cata/R/ocov.R | 3 cata-0.1.2.0/cata/R/plift.R | 54 +-- cata-0.1.2.0/cata/build/partial.rdb |binary cata-0.1.2.0/cata/man/barray.Rd | 23 - cata-0.1.2.0/cata/man/bcdiff.Rd |only cata-0.1.2.0/cata/man/bcluster.Rd | 20 - cata-0.1.2.0/cata/man/bcluster.h.Rd | 6 cata-0.1.2.0/cata/man/bcluster.n.Rd | 23 - cata-0.1.2.0/cata/man/getb.Rd | 20 - cata-0.1.2.0/cata/man/homogeneity.Rd | 11 cata-0.1.2.0/cata/man/inspect.Rd | 6 cata-0.1.2.0/cata/man/plift.Rd | 18 - cata-0.1.2.0/cata/man/selectionPlot.Rd | 12 cata-0.1.2.0/cata/man/toTallMatrix.Rd |only cata-0.1.2.0/cata/man/toWideMatrix.Rd | 5 25 files changed, 657 insertions(+), 701 deletions(-)
Title: Power Analysis Across a Grid of Assumptions
Description: Evaluate a function across a grid of parameters. The function may be evaluated once, or many times for simulation. Parallel computing is facilitated. Utilities aim at performing analyses of power and sample size, allowing for easy search of minimum n (or min/max of any other parameter) to achieve a desired minimal level of power (or maximum of any other objective). Plotting functions are included that present the dependency of n and power in relation to further assumptions.
Author: Gilles Dutilh [aut, cre] ,
Richard Charles Allen [aut]
Maintainer: Gilles Dutilh <info@gillesdutilh.com>
Diff between powergrid versions 0.5.0 dated 2025-09-30 and 0.6.2 dated 2026-07-31
DESCRIPTION | 11 MD5 | 62 +- NAMESPACE | 1 NEWS.md | 25 R/example.R | 10 R/gridplot.R | 260 ++++++--- R/inputchecks.R |only R/powergrid.R | 213 +++++-- R/powerplot.R | 808 +++++++++++++++++------------- R/refine.R | 41 - README.md | 48 + build/vignette.rds |binary inst/doc/powergrid.Rmd | 13 inst/doc/powergrid.html | 108 +--- man/AddExample.Rd | 17 man/CheckArrayDim.Rd |only man/EnsureSingleFunOut.Rd |only man/EnsureSummarized.Rd |only man/Example.Rd | 8 man/FindTarget.Rd | 2 man/GridPlot.Rd | 28 - man/PowerDF.Rd | 2 man/PowerGrid.Rd | 24 man/PowerPlot.Rd | 25 man/Refine.Rd | 40 - man/figures/readmeplot-1.png |binary man/print.power_array.Rd | 2 man/sub-.power_array.Rd | 2 man/summary.power_array.Rd | 2 tests/testthat/test-example.R | 16 tests/testthat/test-findtarget.R | 14 tests/testthat/test-powergrid.R | 73 +- tests/testthat/test-summarizeiterations.R | 42 + vignettes/powergrid.Rmd | 13 34 files changed, 1189 insertions(+), 721 deletions(-)
Title: Create Shareable Links for 'webR' and 'Shinylive' Environments
Description: Creates shareable links for 'R' code in 'WebAssembly' (WASM)
Read-Eval-Print Loop (REPL) environments like 'webR'
<https://webr.r-wasm.org/> and for 'Shiny' applications using
'Shinylive' <https://shinylive.io/>. Supports single scripts,
multi-file projects, exercise and solution pairs, and batch
processing. Includes encoding, decoding, and previewing of links
for both 'R' and 'Python' environments.
Author: James Joseph Balamuta [aut, cre, cph],
reprex authors [cph] and
trim_common_leading_ws, adapted in R/process-input.R; see
inst/COPYRIGHTS)
Maintainer: James Joseph Balamuta <james.balamuta@gmail.com>
Diff between livelink versions 0.1.0 dated 2026-07-24 and 0.1.1 dated 2026-07-31
livelink-0.1.0/livelink/man/figures/livelink-animated-logo.svg |only livelink-0.1.0/livelink/man/figures/livelink-logo.svg |only livelink-0.1.1/livelink/DESCRIPTION | 6 livelink-0.1.1/livelink/MD5 | 205 ++-- livelink-0.1.1/livelink/NEWS.md | 60 + livelink-0.1.1/livelink/R/as-data-frame.R | 34 livelink-0.1.1/livelink/R/build-webr-repl-link.R | 35 livelink-0.1.1/livelink/R/classes.R | 369 +++++++- livelink-0.1.1/livelink/R/decode-shinylive-link.R | 152 ++- livelink-0.1.1/livelink/R/decode-webr-repl-link.R | 241 ++++- livelink-0.1.1/livelink/R/extract-link.R | 39 livelink-0.1.1/livelink/R/format-methods.R | 19 livelink-0.1.1/livelink/R/knit-print.R | 32 livelink-0.1.1/livelink/R/knitr-engine.R | 129 +- livelink-0.1.1/livelink/R/options.R | 32 livelink-0.1.1/livelink/R/process-input.R | 439 ++++++++-- livelink-0.1.1/livelink/R/shinylive-link.R | 206 +++- livelink-0.1.1/livelink/R/utils.R | 94 +- livelink-0.1.1/livelink/R/validators.R | 332 ++++++- livelink-0.1.1/livelink/R/webr-repl-directory-links.R | 69 + livelink-0.1.1/livelink/R/webr-repl-links.R | 170 ++- livelink-0.1.1/livelink/README.md | 45 - livelink-0.1.1/livelink/inst/doc/decoding-links.html | 75 - livelink-0.1.1/livelink/inst/doc/decoding-links.qmd | 9 livelink-0.1.1/livelink/inst/doc/getting-started.html | 35 livelink-0.1.1/livelink/inst/doc/getting-started.qmd | 7 livelink-0.1.1/livelink/inst/doc/links-in-documents.html | 21 livelink-0.1.1/livelink/inst/doc/links-in-documents.qmd | 2 livelink-0.1.1/livelink/inst/doc/teaching.html | 75 - livelink-0.1.1/livelink/inst/doc/webr-and-shinylive.html | 33 livelink-0.1.1/livelink/man/as.character.webr_link.Rd | 14 livelink-0.1.1/livelink/man/as.data.frame.livelink.Rd | 35 livelink-0.1.1/livelink/man/decode_shinylive_link.Rd | 65 + livelink-0.1.1/livelink/man/decode_webr_link.Rd | 59 + livelink-0.1.1/livelink/man/figures/chunk-modes-dark.svg | 2 livelink-0.1.1/livelink/man/figures/chunk-modes-light.svg | 2 livelink-0.1.1/livelink/man/figures/chunk-options-dark.svg | 4 livelink-0.1.1/livelink/man/figures/chunk-options-light.svg | 4 livelink-0.1.1/livelink/man/figures/course-dark.svg | 2 livelink-0.1.1/livelink/man/figures/course-light.svg | 2 livelink-0.1.1/livelink/man/figures/dialects-dark.svg | 8 livelink-0.1.1/livelink/man/figures/dialects-light.svg | 8 livelink-0.1.1/livelink/man/figures/engine-dark.svg | 2 livelink-0.1.1/livelink/man/figures/engine-light.svg | 2 livelink-0.1.1/livelink/man/figures/exercise-dark.svg | 10 livelink-0.1.1/livelink/man/figures/exercise-light.svg | 10 livelink-0.1.1/livelink/man/figures/hero-dark.svg | 4 livelink-0.1.1/livelink/man/figures/hero-light.svg | 4 livelink-0.1.1/livelink/man/figures/panels-dark.svg | 2 livelink-0.1.1/livelink/man/figures/panels-light.svg | 2 livelink-0.1.1/livelink/man/figures/pipeline-dark.svg | 4 livelink-0.1.1/livelink/man/figures/pipeline-light.svg | 4 livelink-0.1.1/livelink/man/figures/preview-decode-dark.svg | 4 livelink-0.1.1/livelink/man/figures/preview-decode-light.svg | 4 livelink-0.1.1/livelink/man/figures/projects-dark.svg | 4 livelink-0.1.1/livelink/man/figures/projects-light.svg | 4 livelink-0.1.1/livelink/man/figures/roundtrip-dark.svg | 86 + livelink-0.1.1/livelink/man/figures/roundtrip-light.svg | 86 + livelink-0.1.1/livelink/man/figures/share-button-dark.svg |only livelink-0.1.1/livelink/man/figures/share-button-light.svg |only livelink-0.1.1/livelink/man/figures/shinylive-dark.svg | 2 livelink-0.1.1/livelink/man/figures/shinylive-light.svg | 2 livelink-0.1.1/livelink/man/figures/two-ways-dark.svg |only livelink-0.1.1/livelink/man/figures/two-ways-light.svg |only livelink-0.1.1/livelink/man/figures/url-anatomy-dark.svg | 6 livelink-0.1.1/livelink/man/figures/url-anatomy-light.svg | 6 livelink-0.1.1/livelink/man/format.livelink.Rd | 16 livelink-0.1.1/livelink/man/knit_print.livelink.Rd | 23 livelink-0.1.1/livelink/man/livelink-knitr.Rd | 87 + livelink-0.1.1/livelink/man/preview_shinylive_link.Rd | 24 livelink-0.1.1/livelink/man/preview_webr_link.Rd | 30 livelink-0.1.1/livelink/man/print.shinylive_decoded.Rd | 7 livelink-0.1.1/livelink/man/print.shinylive_decoded_batch.Rd | 8 livelink-0.1.1/livelink/man/print.shinylive_directory.Rd | 7 livelink-0.1.1/livelink/man/print.shinylive_link.Rd | 7 livelink-0.1.1/livelink/man/print.shinylive_preview.Rd | 12 livelink-0.1.1/livelink/man/print.shinylive_project.Rd | 7 livelink-0.1.1/livelink/man/print.webr_decoded.Rd | 8 livelink-0.1.1/livelink/man/print.webr_decoded_batch.Rd | 8 livelink-0.1.1/livelink/man/print.webr_directory.Rd | 7 livelink-0.1.1/livelink/man/print.webr_exercise.Rd | 7 livelink-0.1.1/livelink/man/print.webr_link.Rd | 7 livelink-0.1.1/livelink/man/print.webr_preview.Rd | 12 livelink-0.1.1/livelink/man/print.webr_project.Rd | 7 livelink-0.1.1/livelink/man/repl_urls.Rd | 18 livelink-0.1.1/livelink/man/set_webr_base_url.Rd | 23 livelink-0.1.1/livelink/man/shinylive_directory.Rd | 28 livelink-0.1.1/livelink/man/shinylive_project.Rd | 17 livelink-0.1.1/livelink/man/shinylive_py_link.Rd | 26 livelink-0.1.1/livelink/man/shinylive_r_link.Rd | 31 livelink-0.1.1/livelink/man/webr_repl_directory.Rd | 55 - livelink-0.1.1/livelink/man/webr_repl_exercise.Rd | 21 livelink-0.1.1/livelink/man/webr_repl_link.Rd | 50 - livelink-0.1.1/livelink/man/webr_repl_project.Rd | 27 livelink-0.1.1/livelink/tests/testthat/_snaps/s3-methods.md | 8 livelink-0.1.1/livelink/tests/testthat/test-decode-formats.R | 46 + livelink-0.1.1/livelink/tests/testthat/test-decode.R | 148 +++ livelink-0.1.1/livelink/tests/testthat/test-directory.R | 2 livelink-0.1.1/livelink/tests/testthat/test-knitr-engine.R | 20 livelink-0.1.1/livelink/tests/testthat/test-process-input.R | 182 ++++ livelink-0.1.1/livelink/tests/testthat/test-shinylive-link.R | 25 livelink-0.1.1/livelink/tests/testthat/test-validators.R | 53 + livelink-0.1.1/livelink/tests/testthat/test-webr-repl-link.R | 49 + livelink-0.1.1/livelink/tests/testthat/test-wire-format.R |only livelink-0.1.1/livelink/vignettes/decoding-links.qmd | 9 livelink-0.1.1/livelink/vignettes/getting-started.qmd | 7 livelink-0.1.1/livelink/vignettes/links-in-documents.qmd | 2 107 files changed, 3451 insertions(+), 1098 deletions(-)
Title: Flexible, Extensible, & Reproducible Pupillometry Preprocessing
Description: Pupillometry offers a non-invasive window into the mind and has been used extensively as a psychophysiological readout of arousal signals linked with cognitive processes like attention, stress, and emotional states [Clewett et al. (2020) <doi:10.1038/s41467-020-17851-9>; Kret & Sjak-Shie (2018) <doi:10.3758/s13428-018-1075-y>; Strauch (2024) <doi:10.1016/j.tins.2024.06.002>]. Yet, despite decades of pupillometry research, many established packages and workflows to date lack design patterns based on Findability, Accessibility, Interoperability, and Reusability (FAIR) principles [see Wilkinson et al. (2016) <doi:10.1038/sdata.2016.18>]. 'eyeris' provides a modular, performant, and extensible preprocessing framework for pupillometry data with BIDS-like organization and interactive output reports [Esteban et al. (2019) <doi:10.1038/s41592-018-0235-4>; Gorgolewski et al. (2016) <doi:10.1038/sdata.2016.44>]. Development was supported, in part, by the S [...truncated...]
Author: Shawn Schwartz [aut, cre] ,
Mingjian He [ctb],
Haopei Yang [ctb],
Alice Xue [ctb],
Gustavo Santiago-Reyes [ctb]
Maintainer: Shawn Schwartz <shawn.t.schwartz@gmail.com>
Diff between eyeris versions 3.2.0 dated 2026-06-19 and 3.3.0 dated 2026-07-31
eyeris-3.2.0/eyeris/man/draw_na_lines.Rd |only eyeris-3.3.0/eyeris/DESCRIPTION | 16 eyeris-3.3.0/eyeris/MD5 | 187 ++- eyeris-3.3.0/eyeris/NAMESPACE | 6 eyeris-3.3.0/eyeris/NEWS.md | 52 eyeris-3.3.0/eyeris/R/eyeris-package.R | 1 eyeris-3.3.0/eyeris/R/pipeline-bidsify.R | 55 eyeris-3.3.0/eyeris/R/pipeline-bin.R | 28 eyeris-3.3.0/eyeris/R/pipeline-confounds.R | 10 eyeris-3.3.0/eyeris/R/pipeline-deblink.R | 5 eyeris-3.3.0/eyeris/R/pipeline-detransient.R | 3 eyeris-3.3.0/eyeris/R/pipeline-detrend.R | 147 ++ eyeris-3.3.0/eyeris/R/pipeline-downsample.R | 47 eyeris-3.3.0/eyeris/R/pipeline-glassbox.R | 367 +++++- eyeris-3.3.0/eyeris/R/pipeline-interpolate.R | 287 ++++- eyeris-3.3.0/eyeris/R/pipeline-loadasc.R | 12 eyeris-3.3.0/eyeris/R/pipeline-loadgeneric.R |only eyeris-3.3.0/eyeris/R/pipeline-lpfilt.R | 52 eyeris-3.3.0/eyeris/R/pipeline-resample.R |only eyeris-3.3.0/eyeris/R/pipeline-zscore.R | 3 eyeris-3.3.0/eyeris/R/plot.eyeris.R | 554 +++------- eyeris-3.3.0/eyeris/R/simulate-eyeris.R |only eyeris-3.3.0/eyeris/R/utils-boilerplate.R | 23 eyeris-3.3.0/eyeris/R/utils-checks.R | 252 ++++ eyeris-3.3.0/eyeris/R/utils-parsers.R | 2 eyeris-3.3.0/eyeris/R/utils-reaborn.R |only eyeris-3.3.0/eyeris/R/utils-render_report.R | 269 +++- eyeris-3.3.0/eyeris/R/utils-zip-gallery.R | 46 eyeris-3.3.0/eyeris/R/zzz.R | 8 eyeris-3.3.0/eyeris/README.md | 186 +-- eyeris-3.3.0/eyeris/build/vignette.rds |binary eyeris-3.3.0/eyeris/inst/WORDLIST | 32 eyeris-3.3.0/eyeris/inst/doc/agents.R |only eyeris-3.3.0/eyeris/inst/doc/agents.Rmd |only eyeris-3.3.0/eyeris/inst/doc/agents.html |only eyeris-3.3.0/eyeris/inst/doc/anatomy.R | 1 eyeris-3.3.0/eyeris/inst/doc/anatomy.Rmd | 17 eyeris-3.3.0/eyeris/inst/doc/anatomy.html | 57 - 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Title: Metric Unfolding
Description: Multidimensional unfolding using Schoenemann's algorithm for metric
and Procrustes rotation of unfolding results.
Author: Martin Elff [aut, cre]
Maintainer: Martin Elff <martin@elff.eu>
Diff between munfold versions 0.3.5 dated 2016-02-08 and 0.3.7 dated 2026-07-31
DESCRIPTION | 20 ++-- MD5 | 13 ++ build |only inst/ChangeLog | 225 +++++++++++++++++++++++++++++++++++++++++++++---- inst/doc |only man/figures |only man/metricUnfolding.Rd | 2 vignettes |only 8 files changed, 234 insertions(+), 26 deletions(-)
Title: Sampling Error Estimation for Complex Surveys
Description: Estimates sampling errors and produces indicator tables for
complex survey data. Supports weighted totals, proportions, standard
errors, confidence intervals, coefficients of variation, design effects,
unweighted frequencies, grouped estimates, domain estimates, optional
stratification and clustering variables, and customizable exports to
'.xlsx' files. Survey estimation is based on design-based inference using
Taylor series linearization implemented in the 'survey' package (Lumley,
2004, <doi:10.18637/jss.v009.i08>; Lumley, 2010,
ISBN:9780470284308). The package provides a reproducible workflow for
official statistics, household surveys, and applied survey research.
Author: Luis Burgos [aut, cre]
Maintainer: Luis Burgos <lburgoss1996@gmail.com>
Diff between svySE versions 0.2.0 dated 2026-07-14 and 0.2.1 dated 2026-07-31
DESCRIPTION | 6 MD5 | 38 NEWS.md | 38 R/calculo.R | 2 R/columnas.R | 657 +++++++----- R/exportar.R | 1920 +++++++++++++++++++------------------ R/simple.R | 1177 ++++++++++++---------- README.md | 1511 +++++++++++++++-------------- inst/CITATION | 9 inst/doc/svySE-basic-workflow.R | 77 + inst/doc/svySE-basic-workflow.Rmd | 1303 +++++++++++++------------ inst/doc/svySE-basic-workflow.html | 452 +++++--- man/print.svySE_simple_result.Rd | 5 man/svySE_cols_tab.Rd | 13 man/svySE_simple.Rd | 83 - man/svySE_xlsx.Rd | 11 tests/testthat/test-columnas.R | 228 ++-- tests/testthat/test-exportar.R | 523 +++------- tests/testthat/test-simple.R | 533 +++++----- vignettes/svySE-basic-workflow.Rmd | 1303 +++++++++++++------------ 20 files changed, 5333 insertions(+), 4556 deletions(-)
Title: Adaptive Machine Learning-Powered, Context-Matching Tool for
Single-Cell and Spatial Transcriptomics Annotation
Description: Annotates single-cell and spatial-transcriptomic (ST) data using context-matching marker datasets. It creates a unified marker list (`Markers_list`) from multiple sources: built-in curated databases ('Cellmarker2', 'PanglaoDB', 'ScType', 'CellTypist', 'scIBD', 'TCellSI', 'PCTIT', 'PCTAM'), Seurat objects with cell labels, or user-provided Excel tables. SlimR first uses adaptive machine learning for parameter optimization, and then offers two automated annotation approaches: 'cluster-based' and 'per-cell'. Cluster-based annotation assigns one label per cluster, expression-based probability calculation, and AUC validation. Per-cell annotation assigns labels to individual cells using three scoring methods with adaptive thresholds and ratio-based confidence filtering, plus optional UMAP spatial smoothing, making it ideal for heterogeneous clusters and rare cell types. The package also supports semi-automated workflows with heatmaps, feature plots, and combined visualizations for manual ann [...truncated...]
Author: Zhaoqing Wang [aut, cre]
Maintainer: Zhaoqing Wang <zhaoqingwang@mail.sdu.edu.cn>
Diff between SlimR versions 1.1.7 dated 2026-07-22 and 1.1.8 dated 2026-07-31
DESCRIPTION | 10 - MD5 | 47 ++++--- NAMESPACE | 1 NEWS.md | 12 + R/Database_CellTypist.R |only R/Database_Markers_list_scIBD.R | 23 ++- R/Plot_Hierarchy_Proportion.R | 37 +++++- R/paletteDiscrete.R | 2 README.md | 235 +++++++++++++++++++++++++++++---------- data/CellTypist.rda |only data/Markers_list_scIBD.rda |binary man/CellTypist.Rd |only man/Cellmarker2.Rd | 1 man/Cellmarker2_raw.Rd | 1 man/Cellmarker2_table.Rd | 1 man/Markers_list_PCTAM.Rd | 1 man/Markers_list_PCTIT.Rd | 1 man/Markers_list_TCellSI.Rd | 1 man/Markers_list_scIBD.Rd | 22 ++- man/PanglaoDB.Rd | 1 man/PanglaoDB_raw.Rd | 1 man/PanglaoDB_table.Rd | 1 man/Plot_Hierarchy_Proportion.Rd | 12 + man/ScType.Rd | 1 man/ScType_raw.Rd | 1 man/ScType_table.Rd | 1 26 files changed, 307 insertions(+), 106 deletions(-)
Title: Rashomon Set of Optimal Trees
Description: Implements a general framework for globally optimizing
user-specified objective functionals over interpretable binary weight functions
represented as sparse decision trees, called ROOT (Rashomon Set of Optimal Trees).
It searches over candidate trees to construct a
Rashomon set of near-optimal solutions and derives a summary tree highlighting stable
patterns in the optimized weights. ROOT includes a built-in generalizability mode for
identifying subgroups in trial settings for transportability analyses
(Parikh et al. (2025) <doi:10.1080/01621459.2025.2495319>).
Author: Yiren Hou [aut] ,
Peter Liu [aut, cre] ,
Sean McGrath [aut] ,
Harsh Parikh [aut]
Maintainer: Peter Liu <bliu68@jh.edu>
Diff between ROOT versions 0.1.1 dated 2026-03-10 and 0.2.0 dated 2026-07-31
DESCRIPTION | 15 +- MD5 | 31 +++--- NEWS.md | 16 ++- R/ROOT.R | 97 ++++++++++++++++++- R/characterizing_underrep.R | 23 ++++ R/treeBuilding.R | 95 ++++++++++++++++-- R/utilsROOT.R | 142 ++++++++++++++++++++++++++++ inst/doc/generalizability_path_example.html | 27 ++--- inst/doc/optimization_path_example.html | 3 inst/doc/quickstart.html | 3 inst/extdata/manual.pdf |binary man/ROOT.Rd | 42 ++++++++ man/characterizing_underrep.Rd | 21 +++- man/crump_alpha.Rd |only man/split_node.Rd | 14 ++ man/split_point.Rd |only man/trim_positivity_violations.Rd |only tests/testthat/test-positivity.R |only tests/testthat/test-split-strategy.R |only 19 files changed, 474 insertions(+), 55 deletions(-)
Title: Conjoint Analysis with Reliability Correction and Visualization
Description: Provides tools for analyzing data generated from conjoint survey experiments, a method widely used in the social sciences for studying multidimensional preferences. The package implements estimation of marginal means (MMs) and average marginal component effects (AMCEs), with corrections for measurement error. Methods include profile-level and choice-level estimators, bias correction using intra-respondent reliability (IRR), and visualization utilities. For details on the methodology, see Clayton, Horiuchi, Kaufman, King, and Komisarchik (2025) <https://gking.harvard.edu/conjointE>.
Author: Yusaku Horiuchi [aut, cre] ,
Aaron Kaufman [aut] ,
Gary King [aut]
Maintainer: Yusaku Horiuchi <yusaku.horiuchi@gmail.com>
Diff between projoint versions 1.1.2 dated 2026-07-15 and 1.1.3 dated 2026-07-31
DESCRIPTION | 8 MD5 | 34 +- NEWS.md | 25 + R/read_Qualtrics.R | 74 ++++- R/reshape_projoint.R | 277 ++++++++++++++++++++-- README.md | 9 inst/CITATION | 2 inst/doc/analyze.Rmd | 6 inst/doc/analyze.html | 12 inst/doc/faq.html | 5 inst/doc/read.R | 2 inst/doc/read.Rmd | 19 + inst/doc/read.html | 22 + man/read_Qualtrics.Rd | 13 - man/reshape_projoint.Rd | 33 ++ tests/testthat/test-read_Qualtrics.R |only tests/testthat/test-reshape-projoint-validation.R |only vignettes/analyze.Rmd | 6 vignettes/read.Rmd | 19 + 19 files changed, 473 insertions(+), 93 deletions(-)
Title: Methods for Assessing Factor Complexity and Simplicity in Factor
Analysis Solutions
Description: Provides methods for estimating factor complexity coefficients in exploratory and confirmatory factor analysis (EFA/CFA) results. Included indices are the Hofman coefficient, Fleming's approach for factor simplicity, and others. Additional outputs include descriptive statistics (minimum, maximum, and mean) for target and non-target loadings, and visualization of results. References: Fleming, J.S. (2003) <doi:10.3758/bf03195531>; Hofmann, R.J. (1978) <doi:10.1207/s15327906mbr1302_9>; Kaiser, H.F. (1974) <doi:10.1007/BF02291575>; Bentler, P.M. (1977) <doi:10.1007/BF02294054>; Lorenzo-Seva, U. (2003) <doi:10.1007/BF02296652>.
Author: Merino-Soto Cesar A. [aut, cre],
Dominguez-Lara Sergio [ctb]
Maintainer: Merino-Soto Cesar A. <sikayax@yahoo.com.ar>
Diff between facomplex versions 0.0.3 dated 2026-07-21 and 1.0.0 dated 2026-07-31
DESCRIPTION | 10 MD5 | 21 +- NEWS.md |only R/Hofmann.R | 157 ++++++++++----- R/HofmannFac.R | 2 R/entropyFL.R | 404 ++++++++++++++++++++++++++------------- README.md | 32 +-- inst/doc/example2_facomplex.html | 72 +++--- inst/doc/intro_facomplex.html | 148 +++++++------- man/Hofmann.Rd | 154 ++++++++------ man/HofmannFac.Rd | 106 +++++----- man/entropyFL.Rd | 155 +++++++------- 12 files changed, 749 insertions(+), 512 deletions(-)
Title: Transparent and Assisted Linear Modeling Engine
Description: Unified estimation, diagnostics, and reporting for ordinary least
squares (OLS) regression, ANOVA/t-tests, logistic regression, panel data
(fixed/random effects with Hausman test), instrumental variables (2SLS with
weak instrument diagnostics), and difference-in-differences. Designed for
applied researchers in social sciences with integrated "Methodological Customs"
that audit assumptions and provide literature references. All methods
implemented in pure base R without external dependencies beyond stats and
graphics packages.
Author: Manuel Soto-Perez [aut, cre]
Maintainer: Manuel Soto-Perez <msoto@up.edu.mx>
Diff between OLSengine versions 1.1.0 dated 2026-07-13 and 1.1.1 dated 2026-07-31
DESCRIPTION | 6 +-- MD5 | 10 ++--- NEWS.md | 25 +++++++++++++ R/OLS_engine.R | 72 +++++++++++++++++++++++----------------- README.md | 4 +- inst/doc/vignette_tutorial.html | 14 +++---- 6 files changed, 85 insertions(+), 46 deletions(-)
Title: Animated Glass-Style Tabs and Select Inputs for 'Shiny'
Description: Tools for creating animated glassmorphism-style tab
navigation and select filter widgets in 'Shiny' applications.
Provides a tab navigation component with a sliding glass halo
animation, a searchable multi-select dropdown, and a single-select
dropdown - all with multiple colour themes and server-side update
helpers. Tabs support icons, numeric badges, disable/enable toggling,
runtime append/remove, reactive rendering via 'renderGlassTabs()', URL
bookmarking, and compact mode for dashboard card layouts.
'glassTabCondition()' generates 'conditionalPanel()' condition strings
without needing to recall the internal input key pattern.
'glasstabs_news()' displays the release notes from the R console.
Built-in example apps can be launched with 'runGlassExample()'. All
widgets are compatible with standard 'Shiny' layouts and 'bs4Dash'
dashboards and 'bslib' themed applications. For full documentation
and examples see Arthur (2026) <https://prigasg.github.io/glasstabs/>.
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between glasstabs versions 0.3.3 dated 2026-06-24 and 0.3.4 dated 2026-07-31
glasstabs-0.3.3/glasstabs/R/zzz.R |only glasstabs-0.3.3/glasstabs/tests/testthat/test-new-features.R |only glasstabs-0.3.3/glasstabs/tests/testthat/test-public-readiness.R |only glasstabs-0.3.3/glasstabs/tests/testthat/test-roadmap-phase1.R |only glasstabs-0.3.4/glasstabs/DESCRIPTION | 15 glasstabs-0.3.4/glasstabs/MD5 | 152 glasstabs-0.3.4/glasstabs/NAMESPACE | 3 glasstabs-0.3.4/glasstabs/NEWS.md | 700 - glasstabs-0.3.4/glasstabs/R/close_selects.R |only glasstabs-0.3.4/glasstabs/R/dependencies.R | 263 glasstabs-0.3.4/glasstabs/R/glassSelect.R | 100 glasstabs-0.3.4/glasstabs/R/glass_multiselect.R | 255 glasstabs-0.3.4/glasstabs/R/glass_select_theme.R | 24 glasstabs-0.3.4/glasstabs/R/glass_tab_theme.R | 282 glasstabs-0.3.4/glasstabs/R/glass_tabs.R | 1717 +-- glasstabs-0.3.4/glasstabs/R/tab-utils.R |only glasstabs-0.3.4/glasstabs/R/utils-check.R |only glasstabs-0.3.4/glasstabs/R/utils.R |only glasstabs-0.3.4/glasstabs/README.md | 840 - glasstabs-0.3.4/glasstabs/build/vignette.rds |binary glasstabs-0.3.4/glasstabs/inst/WORDLIST | 9 glasstabs-0.3.4/glasstabs/inst/doc/cheatsheet.Rmd | 21 glasstabs-0.3.4/glasstabs/inst/doc/cheatsheet.html | 7 glasstabs-0.3.4/glasstabs/inst/doc/getting-started.R | 26 glasstabs-0.3.4/glasstabs/inst/doc/getting-started.Rmd | 52 glasstabs-0.3.4/glasstabs/inst/doc/getting-started.html | 48 glasstabs-0.3.4/glasstabs/inst/doc/glassSelect.R | 29 glasstabs-0.3.4/glasstabs/inst/doc/glassSelect.Rmd | 52 glasstabs-0.3.4/glasstabs/inst/doc/glassSelect.html | 380 glasstabs-0.3.4/glasstabs/inst/doc/indicators.R |only glasstabs-0.3.4/glasstabs/inst/doc/indicators.Rmd |only glasstabs-0.3.4/glasstabs/inst/doc/indicators.html |only glasstabs-0.3.4/glasstabs/inst/doc/multiselect.R | 26 glasstabs-0.3.4/glasstabs/inst/doc/multiselect.Rmd | 50 glasstabs-0.3.4/glasstabs/inst/doc/multiselect.html | 385 glasstabs-0.3.4/glasstabs/inst/doc/posit-connect.R |only glasstabs-0.3.4/glasstabs/inst/doc/posit-connect.Rmd |only glasstabs-0.3.4/glasstabs/inst/doc/posit-connect.html |only glasstabs-0.3.4/glasstabs/inst/doc/tabs.R | 47 glasstabs-0.3.4/glasstabs/inst/doc/tabs.Rmd | 466 - 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89 files changed, 8740 insertions(+), 7397 deletions(-)
Title: Threshold-Sweep QCA
Description: Provides threshold sweep methods for Qualitative Comparative
Analysis (QCA). Implements Condition Threshold Sweep-Single (CTS-S),
Condition Threshold Sweep-Multiple (CTS-M), Outcome Threshold Sweep (OTS),
and Dual Threshold Sweep (DTS) for systematic exploration of threshold
calibration effects on crisp-set QCA results. These methods extend
traditional robustness approaches by treating threshold variation as an
exploratory tool for discovering causal structures. Also provides Fiss
(2011) <doi:10.5465/amj.2011.60263120> core/peripheral condition
classification via compute_fiss_core() and generate_fiss_chart(), enabling
four-symbol configuration charts that distinguish core conditions (present
in both parsimonious and intermediate solutions) from peripheral conditions
(intermediate only). Built on top of the 'QCA' package by Dusa (2019)
<doi:10.1007/978-3-319-75668-4>, with function arguments following 'QCA'
conventions. Based on set-theoretic methods by Ragin (2008)
<doi: [...truncated...]
Author: Yuki Toyoda [aut, cre],
Japan Society for the Promotion of Science [fnd]
Maintainer: Yuki Toyoda <yuki.toyoda.ds@hosei.ac.jp>
Diff between ThSQCA versions 2.0.5 dated 2026-07-23 and 2.0.6 dated 2026-07-31
DESCRIPTION | 6 MD5 | 36 ++--- NEWS.md | 103 +++++++++++++++ R/tsqca_config_chart.R | 32 ++-- R/tsqca_core.R | 102 ++++++++++++--- R/tsqca_cts.R | 54 ++++++++ R/tsqca_fiss_core.R | 43 +++++- R/tsqca_ots_dts.R | 18 ++ R/tsqca_report.R | 77 +---------- inst/doc/ThSQCA_Reproducible_EN.html | 19 +- inst/doc/ThSQCA_Tutorial_EN.html | 14 +- man/collect_unique_i_sol.Rd |only man/ctSweepM.Rd | 22 +++ man/ctSweepS.Rd | 9 + man/dtSweep.Rd | 9 + man/get_n_solutions.Rd | 2 man/otSweep.Rd | 9 + man/print_fiss_summary.Rd | 2 tests/testthat/helper-fixtures.R | 213 +++++++++++++++++++++++++++++++++ tests/testthat/test-multichart-dedup.R |only 20 files changed, 622 insertions(+), 148 deletions(-)
Title: Decision Analytic Modelling in Health Economics
Description: Classes and functions for modelling health care interventions
using decision trees and semi-Markov models. Mechanisms are provided for
associating an uncertainty distribution with each source variable and for
ensuring transparency of the mathematical relationships between variables.
The package terminology follows Briggs "Decision Modelling for Health
Economic Evaluation" (2006, ISBN:978-0-19-852662-9).
Author: Andrew Sims [aut, cre] ,
Kim Keltie [aut] ,
Paola Cognigni [aut]
Maintainer: Andrew Sims <andrew.sims@newcastle.ac.uk>
Diff between rdecision versions 1.3.0 dated 2025-02-10 and 1.3.1 dated 2026-07-31
rdecision-1.3.0/rdecision/inst/doc/REFERENCES.bib |only rdecision-1.3.0/rdecision/inst/doc/nature-no-et-al.csl |only rdecision-1.3.0/rdecision/man/figures/lifestyle.png |only rdecision-1.3.0/rdecision/man/figures/phv.png |only rdecision-1.3.0/rdecision/vignettes/.install_extras |only rdecision-1.3.1/rdecision/DESCRIPTION | 25 rdecision-1.3.1/rdecision/MD5 | 256 rdecision-1.3.1/rdecision/NAMESPACE | 31 rdecision-1.3.1/rdecision/R/Action.R | 19 rdecision-1.3.1/rdecision/R/Arborescence.R | 96 rdecision-1.3.1/rdecision/R/Arrow.R | 6 rdecision-1.3.1/rdecision/R/BetaDistribution.R | 43 rdecision-1.3.1/rdecision/R/BetaModVar.R | 8 rdecision-1.3.1/rdecision/R/ChanceNode.R | 6 rdecision-1.3.1/rdecision/R/ConstModVar.R | 8 rdecision-1.3.1/rdecision/R/DecisionNode.R | 7 rdecision-1.3.1/rdecision/R/DecisionTree.R | 215 rdecision-1.3.1/rdecision/R/Digraph.R | 182 rdecision-1.3.1/rdecision/R/DiracDistribution.R | 50 rdecision-1.3.1/rdecision/R/DirichletDistribution.R | 81 rdecision-1.3.1/rdecision/R/Distribution.R | 42 rdecision-1.3.1/rdecision/R/Edge.R | 18 rdecision-1.3.1/rdecision/R/EmpiricalDistribution.R | 45 rdecision-1.3.1/rdecision/R/ExprModVar.R | 94 rdecision-1.3.1/rdecision/R/GammaDistribution.R | 53 rdecision-1.3.1/rdecision/R/GammaModVar.R | 10 rdecision-1.3.1/rdecision/R/Graph.R | 275 rdecision-1.3.1/rdecision/R/LeafNode.R | 30 rdecision-1.3.1/rdecision/R/LogNormDistribution.R | 98 rdecision-1.3.1/rdecision/R/LogNormModVar.R | 12 rdecision-1.3.1/rdecision/R/MarkovState.R | 46 rdecision-1.3.1/rdecision/R/ModVar.R | 70 rdecision-1.3.1/rdecision/R/Node.R | 15 rdecision-1.3.1/rdecision/R/NormModVar.R | 10 rdecision-1.3.1/rdecision/R/NormalDistribution.R | 51 rdecision-1.3.1/rdecision/R/Reaction.R | 26 rdecision-1.3.1/rdecision/R/SemiMarkovModel.R | 102 rdecision-1.3.1/rdecision/R/Stack.R | 33 rdecision-1.3.1/rdecision/R/Transition.R | 17 rdecision-1.3.1/rdecision/R/rdecision-package.R | 38 rdecision-1.3.1/rdecision/R/utils.R | 124 rdecision-1.3.1/rdecision/README.md | 227 rdecision-1.3.1/rdecision/build/partial.rdb |binary rdecision-1.3.1/rdecision/build/vignette.rds |binary rdecision-1.3.1/rdecision/inst/NEWS.md | 27 rdecision-1.3.1/rdecision/inst/WORDLIST | 9 rdecision-1.3.1/rdecision/inst/doc/DT00-DecisionTreeTutorial.R | 10 rdecision-1.3.1/rdecision/inst/doc/DT00-DecisionTreeTutorial.Rmd | 36 rdecision-1.3.1/rdecision/inst/doc/DT00-DecisionTreeTutorial.html | 2313 +++++ rdecision-1.3.1/rdecision/inst/doc/DT01-Sumatriptan.Rmd | 4 rdecision-1.3.1/rdecision/inst/doc/DT01-Sumatriptan.html | 778 +- rdecision-1.3.1/rdecision/inst/doc/DT02-Tegaderm.R | 1 rdecision-1.3.1/rdecision/inst/doc/DT02-Tegaderm.Rmd | 7 rdecision-1.3.1/rdecision/inst/doc/DT02-Tegaderm.html | 2118 ++++- rdecision-1.3.1/rdecision/inst/doc/DT03-ShaleGas.Rmd | 6 rdecision-1.3.1/rdecision/inst/doc/DT03-ShaleGas.html | 522 + rdecision-1.3.1/rdecision/inst/doc/GT01-NewScientistPuzzle.R | 15 rdecision-1.3.1/rdecision/inst/doc/GT01-NewScientistPuzzle.Rmd | 22 rdecision-1.3.1/rdecision/inst/doc/GT01-NewScientistPuzzle.html | 273 rdecision-1.3.1/rdecision/inst/doc/SM00-PHV.R | 156 rdecision-1.3.1/rdecision/inst/doc/SM00-PHV.Rmd | 164 rdecision-1.3.1/rdecision/inst/doc/SM00-PHV.html | 228 rdecision-1.3.1/rdecision/inst/doc/SM01-HIV.R | 147 rdecision-1.3.1/rdecision/inst/doc/SM01-HIV.Rmd | 156 rdecision-1.3.1/rdecision/inst/doc/SM01-HIV.html | 723 - rdecision-1.3.1/rdecision/inst/doc/SM02-TKR.R | 164 rdecision-1.3.1/rdecision/inst/doc/SM02-TKR.Rmd | 181 rdecision-1.3.1/rdecision/inst/doc/SM02-TKR.html | 3886 +++++++--- rdecision-1.3.1/rdecision/man/Action.Rd | 300 rdecision-1.3.1/rdecision/man/Arborescence.Rd | 440 - rdecision-1.3.1/rdecision/man/Arrow.Rd | 132 rdecision-1.3.1/rdecision/man/BetaDistribution.Rd | 237 rdecision-1.3.1/rdecision/man/BetaModVar.Rd | 129 rdecision-1.3.1/rdecision/man/ChanceNode.Rd | 126 rdecision-1.3.1/rdecision/man/ConstModVar.Rd | 135 rdecision-1.3.1/rdecision/man/DecisionNode.Rd | 128 rdecision-1.3.1/rdecision/man/DecisionTree.Rd | 780 +- rdecision-1.3.1/rdecision/man/Digraph.Rd | 692 - rdecision-1.3.1/rdecision/man/DiracDistribution.Rd | 243 rdecision-1.3.1/rdecision/man/DirichletDistribution.Rd | 254 rdecision-1.3.1/rdecision/man/Distribution.Rd | 332 rdecision-1.3.1/rdecision/man/Edge.Rd | 174 rdecision-1.3.1/rdecision/man/EmpiricalDistribution.Rd | 251 rdecision-1.3.1/rdecision/man/ExprModVar.Rd | 478 - 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Title: Work with Open Road Traffic Casualty Data from Great Britain
Description: Work with and download road traffic casualty data from Great
Britain. Enables access to the UK's official road safety statistics,
'STATS19'. Enables users to specify a download directory for the data,
which can be set permanently by adding `STATS19_DOWNLOAD_DIRECTORY=/path/to/a/dir`
to your `.Renviron` file, which can be opened with `usethis::edit_r_environ()`.
The data is provided as a series of `.csv` files.
This package downloads, reads-in and formats the data, making it suitable
for analysis. See the stats19 vignette for details. Data available from
1979 to 2025. See the official data series at
<https://www.data.gov.uk/dataset/cb7ae6f0-4be6-4935-9277-47e5ce24a11f/road-accidents-safety-data>.
The package is described in a paper in the Journal of Open Source Software
(Lovelace et al. 2019) <doi:10.21105/joss.01181>.
See Gilardi et al. (2022) <doi:10.1111/rssa.12823>,
Vidal-Tortosa et al. (2021) <doi:10.1016/j.jth.2021.101291>,
Tait et al. (2023) <doi:10.101 [...truncated...]
Author: Robin Lovelace [aut, cre] ,
Malcolm Morgan [aut] ,
Layik Hama [aut] ,
Mark Padgham [aut] ,
David Ranzolin [rev],
Adam Sparks [rev, ctb] ,
Ivo Wengraf [ctb],
RAC Foundation [fnd],
Blaise Kelly [aut] ,
Roger Beecham [aut]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stats19 versions 4.0.0 dated 2026-03-18 and 4.1.0 dated 2026-07-31
stats19-4.0.0/stats19/inst/dft-road-casualty-statistics-road-safety-open-dataset-data-guide-2024.xlsx |only stats19-4.1.0/stats19/DESCRIPTION | 36 stats19-4.1.0/stats19/MD5 | 57 stats19-4.1.0/stats19/NEWS.md | 13 stats19-4.1.0/stats19/R/clean.R | 4 stats19-4.1.0/stats19/R/read.R | 14 stats19-4.1.0/stats19/R/stats19-package.R | 7 stats19-4.1.0/stats19/R/utils.R | 26 stats19-4.1.0/stats19/README.md | 81 - stats19-4.1.0/stats19/data/file_names.rda |binary stats19-4.1.0/stats19/inst/doc/blog-v4.html | 4 stats19-4.1.0/stats19/inst/doc/blog.html | 4 stats19-4.1.0/stats19/inst/doc/duckdb.html | 21 stats19-4.1.0/stats19/inst/doc/factsheet.html | 6 stats19-4.1.0/stats19/inst/doc/stats19-training.html | 8 stats19-4.1.0/stats19/inst/doc/stats19.Rmd | 2 stats19-4.1.0/stats19/inst/doc/stats19.html | 666 +++++----- stats19-4.1.0/stats19/man/dl_stats19.Rd | 4 stats19-4.1.0/stats19/man/figures/README-crash-date-plot-1.png |binary stats19-4.1.0/stats19/man/figures/README-crash-time-plot-1.png |binary stats19-4.1.0/stats19/man/figures/README-unnamed-chunk-4-1.png |binary stats19-4.1.0/stats19/man/find_file_name.Rd | 14 stats19-4.1.0/stats19/man/get_stats19.Rd | 7 stats19-4.1.0/stats19/man/read_casualties.Rd | 4 stats19-4.1.0/stats19/man/read_collisions.Rd | 8 stats19-4.1.0/stats19/man/read_vehicles.Rd | 4 stats19-4.1.0/stats19/tests/testthat/test-clean.R | 2 stats19-4.1.0/stats19/tests/testthat/test-multiyear.R | 23 stats19-4.1.0/stats19/tests/testthat/test-read.R | 42 stats19-4.1.0/stats19/vignettes/stats19.Rmd | 2 30 files changed, 635 insertions(+), 424 deletions(-)
Title: Simulate Bespoke Time-to-Event Models Using ODEs
Description: Simulates time-to-event (survival) datasets for clinical trial
design and analysis using ordinary differential equation (ODE) models
solved via the 'mrgsolve' backend. Built-in Weibull and flexible
M-spline baseline hazard models are provided out of the box, and fully
bespoke hazard models can be implemented as custom 'mrgsolve' ODE
systems. Event times are generated by inverse transform sampling from
the resulting cumulative hazard functions. See Bender et al. (2005)
<doi:10.1002/sim.2059> for the inverse transform sampling methodology
and Royston and Parmar (2002) <doi:10.1002/sim.1203> for flexible
parametric survival models.
Author: Carlos Traynor [aut, cre]
Maintainer: Carlos Traynor <carlos.traynor.qcp@gmail.com>
Diff between simtte versions 1.0.1 dated 2026-07-11 and 1.0.2 dated 2026-07-31
DESCRIPTION | 19 ++++---- MD5 | 25 +++++----- NEWS.md | 14 ++++++ R/helpers.R | 6 +- R/inversetsampling.R | 13 +++-- R/simtte.R | 89 ++++++++++++++++++++++++++++++--------- inst/WORDLIST | 1 inst/doc/advanced-usage.R | 14 ++++-- inst/doc/advanced-usage.Rmd | 14 ++++-- inst/doc/advanced-usage.html | 20 +++++++- man/sim_tte_df.Rd | 23 +++++++++- man/simtte-package.Rd | 4 - tests/testthat/test-sim_tte_df.R |only vignettes/advanced-usage.Rmd | 14 ++++-- 14 files changed, 192 insertions(+), 64 deletions(-)
Title: Unified Data Visualization Framework for Dynamic and Static
Graphics
Description: Provides a unified API for creating data visualizations across
dynamic and static rendering modes. Visualizations are defined
once using a specification object and can be rendered with
'highcharter', 'ggplot2', or other supported packages without modifying
user code. The package supports declarative and layered workflows,
reusable themes and colour palettes, optional 'JavaScript'
enhancements, export tools, and interactive exploration through
'shiny' applications.
Author: Yusman Kamaleri [aut, cre]
Maintainer: Yusman Kamaleri <ybkamaleri@gmail.com>
Diff between highdir versions 0.5.0 dated 2026-05-27 and 0.6.0 dated 2026-07-31
highdir-0.5.0/highdir/R/geom-column.R |only highdir-0.5.0/highdir/man/list_backends.Rd |only highdir-0.6.0/highdir/DESCRIPTION | 30 - highdir-0.6.0/highdir/MD5 | 152 +++--- highdir-0.6.0/highdir/NAMESPACE | 91 ++- highdir-0.6.0/highdir/NEWS.md | 49 +- highdir-0.6.0/highdir/R/additional-args.R | 124 ++++- highdir-0.6.0/highdir/R/backend-ggplot2.R | 48 +- highdir-0.6.0/highdir/R/backend-highcharter.R | 33 + highdir-0.6.0/highdir/R/base-figure.R | 10 highdir-0.6.0/highdir/R/figure-spec.R | 166 ++++++- highdir-0.6.0/highdir/R/geom-arearange.R | 2 highdir-0.6.0/highdir/R/geom-column.r |only highdir-0.6.0/highdir/R/geom-line.R | 2 highdir-0.6.0/highdir/R/geom-pie.R | 142 +++++- highdir-0.6.0/highdir/R/geom-rank.R | 16 highdir-0.6.0/highdir/R/geom-scatter.R | 2 highdir-0.6.0/highdir/R/geom-stacked-column.R | 209 ++++---- highdir-0.6.0/highdir/R/geom-venn.R |only highdir-0.6.0/highdir/R/hd-object.R | 83 ++- highdir-0.6.0/highdir/R/highdir-package.R | 8 highdir-0.6.0/highdir/R/make-figure.R | 150 +++++- highdir-0.6.0/highdir/R/options.R | 2 highdir-0.6.0/highdir/R/registry.R | 10 highdir-0.6.0/highdir/R/save.R | 2 highdir-0.6.0/highdir/R/theme.R | 22 highdir-0.6.0/highdir/R/utils.R | 61 +- highdir-0.6.0/highdir/R/validate.R | 2 highdir-0.6.0/highdir/R/zzz.R | 6 highdir-0.6.0/highdir/README.md | 40 - highdir-0.6.0/highdir/inst/app/modules/mod_data.R | 40 - highdir-0.6.0/highdir/inst/app/modules/mod_figure.R | 70 +- highdir-0.6.0/highdir/inst/app/modules/mod_opts.R | 10 highdir-0.6.0/highdir/inst/app/server.R | 2 highdir-0.6.0/highdir/inst/app/ui.R | 14 highdir-0.6.0/highdir/inst/doc/accessibility.R | 8 highdir-0.6.0/highdir/inst/doc/accessibility.Rmd | 10 highdir-0.6.0/highdir/inst/doc/accessibility.html | 36 - highdir-0.6.0/highdir/inst/doc/examples.R | 62 +- highdir-0.6.0/highdir/inst/doc/examples.Rmd | 68 +- highdir-0.6.0/highdir/inst/doc/examples.html | 259 +++++------ highdir-0.6.0/highdir/inst/doc/quick-start.R | 8 highdir-0.6.0/highdir/inst/doc/quick-start.Rmd | 16 highdir-0.6.0/highdir/inst/doc/quick-start.html | 22 highdir-0.6.0/highdir/man/figures/logo.png |binary highdir-0.6.0/highdir/man/gg_venn.Rd |only highdir-0.6.0/highdir/man/hc_venn.Rd |only highdir-0.6.0/highdir/man/hd.Rd | 190 ++++---- highdir-0.6.0/highdir/man/hd_geom_arearange.Rd | 118 ++--- highdir-0.6.0/highdir/man/hd_geom_column.Rd | 126 ++--- highdir-0.6.0/highdir/man/hd_geom_line.Rd | 102 ++-- highdir-0.6.0/highdir/man/hd_geom_pie.Rd | 112 ++-- highdir-0.6.0/highdir/man/hd_geom_ranked_bar.Rd | 186 +++---- highdir-0.6.0/highdir/man/hd_geom_scatter.Rd | 68 +- highdir-0.6.0/highdir/man/hd_geom_stacked_column.Rd | 133 ++--- highdir-0.6.0/highdir/man/hd_geom_venn.Rd |only highdir-0.6.0/highdir/man/hd_make.Rd | 253 +++++----- highdir-0.6.0/highdir/man/hd_reset_theme.Rd |only highdir-0.6.0/highdir/man/hd_save.Rd | 116 ++-- highdir-0.6.0/highdir/man/hd_set_theme.Rd | 3 highdir-0.6.0/highdir/man/hd_spec.Rd | 6 highdir-0.6.0/highdir/man/hd_spec_venn.Rd |only highdir-0.6.0/highdir/man/hd_venn_df.Rd |only highdir-0.6.0/highdir/man/hd_venn_intersect.Rd |only highdir-0.6.0/highdir/man/hd_venn_set.Rd |only highdir-0.6.0/highdir/man/hd_venn_sets_from_spec.Rd |only highdir-0.6.0/highdir/man/highdir-package.Rd | 204 ++++---- highdir-0.6.0/highdir/man/list_modes.Rd |only highdir-0.6.0/highdir/man/register_backend.Rd | 38 - highdir-0.6.0/highdir/man/register_geom.Rd | 4 highdir-0.6.0/highdir/man/venn_df_to_list.Rd |only highdir-0.6.0/highdir/tests/testthat/_snaps |only highdir-0.6.0/highdir/tests/testthat/helper-data.R | 14 highdir-0.6.0/highdir/tests/testthat/test-geom-venn.R |only highdir-0.6.0/highdir/tests/testthat/test-gg-theme.R | 20 highdir-0.6.0/highdir/tests/testthat/test-make-figure.R | 50 +- highdir-0.6.0/highdir/tests/testthat/test-mode-deprecation.R |only highdir-0.6.0/highdir/tests/testthat/test-ranked-bar.R | 112 ++-- highdir-0.6.0/highdir/tests/testthat/test-registry.R | 30 - highdir-0.6.0/highdir/tests/testthat/test-save.R | 2 highdir-0.6.0/highdir/tests/testthat/test-stacked-column.R | 67 +- highdir-0.6.0/highdir/tests/testthat/test-tooltips.R |only highdir-0.6.0/highdir/tests/testthat/test-validate.R | 14 highdir-0.6.0/highdir/vignettes/accessibility.Rmd | 10 highdir-0.6.0/highdir/vignettes/examples.Rmd | 68 +- highdir-0.6.0/highdir/vignettes/quick-start.Rmd | 16 86 files changed, 2445 insertions(+), 1704 deletions(-)
Title: Interface for 'exams' Exercises in 'learnr' Tutorials
Description: Automatic generation of quizzes or individual questions for 'learnr' tutorials based on 'R/exams' exercises.
Author: Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams2learnr versions 0.1-0 dated 2022-10-21 and 0.1-1 dated 2026-07-31
DESCRIPTION | 15 +- MD5 | 21 +-- NEWS.md | 17 ++ R/exams2learnr.R | 1 R/run_quiz.R | 8 - README.md |only build/vignette.rds |binary inst/doc/exams2learnr.R | 158 +++++++++++------------ inst/doc/exams2learnr.Rmd | 4 inst/doc/exams2learnr.html | 303 +++++++++++++++++++++++---------------------- man/run_quiz.Rd | 8 - vignettes/exams2learnr.Rmd | 4 12 files changed, 289 insertions(+), 250 deletions(-)
Title: Embedding 'exams' Exercises as Forms in 'rmarkdown' or 'quarto'
Documents
Description: Automatic generation of quizzes or individual questions as (interactive) forms within 'rmarkdown' or 'quarto' documents based on 'R/exams' exercises.
Author: Achim Zeileis [aut, cre] ,
Reto Stauffer [aut] ,
Dale Barr [ctb] ,
Lisa DeBruine [ctb] ,
Florian Stampfer [ctb] ,
Jonas Tscholl [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams2forms versions 0.2-1 dated 2026-05-05 and 0.2-2 dated 2026-07-31
DESCRIPTION | 10 +++--- MD5 | 11 +++---- NEWS.md | 9 +++++ R/exams2forms.R | 2 + README.md |only build/vignette.rds |binary inst/doc/exams2forms.html | 72 +++++++++++++++++++++++----------------------- 7 files changed, 58 insertions(+), 46 deletions(-)
Title: Dose Response for Omics
Description: Several functions are provided for dose-response (or concentration-response) characterization from omics data. 'DRomics' is especially dedicated to omics data obtained using a typical dose-response design, favoring a great number of tested doses (or concentrations) rather than a great number of replicates (no need of replicates). 'DRomics' provides functions 1) to check, normalize and or transform data, 2) to select monotonic or biphasic significantly responding items (e.g. probes, metabolites), 3) to choose the best-fit model among a predefined family of monotonic and biphasic models to describe each selected item, 4) to derive a benchmark dose or concentration and a typology of response from each fitted curve. In the available version data are supposed to be single-channel microarray data in log2, RNAseq data in raw counts, or already pretreated continuous omics data (such as metabolomic data) in log scale. In order to link responses across biological levels based on a common method, [...truncated...]
Author: Marie-Laure Delignette-Muller [aut] ,
Elise Billoir [aut] ,
Floriane Larras [ctb],
Aurelie Siberchicot [aut, cre]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between DRomics versions 2.6-2 dated 2024-10-16 and 2.6.3 dated 2026-07-31
DRomics-2.6-2/DRomics/tests/testthat/testAIC.R |only DRomics-2.6-2/DRomics/tests/testthat/test_windows_bmdcalc.R |only DRomics-2.6-2/DRomics/tests/testthat/test_windows_drcfit.R |only DRomics-2.6-2/DRomics/tests/testthat/test_windows_itemselect.R |only DRomics-2.6-2/DRomics/tests/testthat/testbmdcalc.R |only DRomics-2.6-2/DRomics/tests/testthat/testbmdplotwithgradient.R |only DRomics-2.6-2/DRomics/tests/testthat/testplotfit.R |only DRomics-2.6-2/DRomics/tests/testthat/testresidualtests.R |only DRomics-2.6-2/DRomics/tests/testthat/testscaling.R |only DRomics-2.6-2/DRomics/tests/testthat/testselectgroups.R |only DRomics-2.6-2/DRomics/tests/testthat/testsensitivityplot.R |only DRomics-2.6-2/DRomics/tests/testthat/testwithNAvalues.R |only DRomics-2.6-2/DRomics/tests/testthat/testwithRNAseq.R |only DRomics-2.6-2/DRomics/tests/testthat/testwithanchoringdata.R |only DRomics-2.6-2/DRomics/tests/testthat/testwithinsitudata.R |only DRomics-2.6-2/DRomics/tests/testthat/testwithmetabolomic.R |only DRomics-2.6-2/DRomics/tests/testthat/testwithmicroarray.R |only DRomics-2.6-2/DRomics/tests/testthat/testwithnoreplicate.R |only DRomics-2.6.3/DRomics/DESCRIPTION | 33 DRomics-2.6.3/DRomics/MD5 | 78 DRomics-2.6.3/DRomics/NAMESPACE | 1 DRomics-2.6.3/DRomics/NEWS.md | 9 DRomics-2.6.3/DRomics/R/RNAseqdata.R | 2 DRomics-2.6.3/DRomics/R/continuousanchoringdata.R | 2 DRomics-2.6.3/DRomics/R/metabolomicdata.R | 2 DRomics-2.6.3/DRomics/R/microarraydata.R | 2 DRomics-2.6.3/DRomics/R/util-basicandfitfunc.R | 4 DRomics-2.6.3/DRomics/build/partial.rdb |binary DRomics-2.6.3/DRomics/build/vignette.rds |binary DRomics-2.6.3/DRomics/inst/DRomics-shiny/install.R | 2 DRomics-2.6.3/DRomics/inst/DRomics-shiny/rinstall.txt | 2 DRomics-2.6.3/DRomics/inst/DRomics-shiny/ui.R | 4 DRomics-2.6.3/DRomics/inst/DRomicsInterpreter-shiny/install.R | 2 DRomics-2.6.3/DRomics/inst/DRomicsInterpreter-shiny/rinstall.txt | 3 DRomics-2.6.3/DRomics/inst/DRomicsInterpreter-shiny/ui.R | 4 DRomics-2.6.3/DRomics/inst/doc/DRomics_vignette.R | 38 DRomics-2.6.3/DRomics/inst/doc/DRomics_vignette.Rmd | 6 DRomics-2.6.3/DRomics/inst/doc/DRomics_vignette.html | 2181 ++++++---- DRomics-2.6.3/DRomics/man/curvesplot.Rd | 2 DRomics-2.6.3/DRomics/tests/testAIC.R |only DRomics-2.6.3/DRomics/tests/testbmdcalc.R |only DRomics-2.6.3/DRomics/tests/testbmdplotwithgradient.R |only DRomics-2.6.3/DRomics/tests/testplotfit.R |only DRomics-2.6.3/DRomics/tests/testresidualtests.R |only DRomics-2.6.3/DRomics/tests/testscaling.R |only DRomics-2.6.3/DRomics/tests/testselectgroups.R |only DRomics-2.6.3/DRomics/tests/testsensitivityplot.R |only DRomics-2.6.3/DRomics/tests/testthat/testthat_bmdcalc.R |only DRomics-2.6.3/DRomics/tests/testthat/testthat_drcfit.R |only DRomics-2.6.3/DRomics/tests/testthat/testthat_itemselect.R |only DRomics-2.6.3/DRomics/tests/testwithNAvalues.R |only DRomics-2.6.3/DRomics/tests/testwithRNAseq.R |only DRomics-2.6.3/DRomics/tests/testwithanchoringdata.R |only DRomics-2.6.3/DRomics/tests/testwithinsitudata.R |only DRomics-2.6.3/DRomics/tests/testwithmetabolomic.R |only DRomics-2.6.3/DRomics/tests/testwithmicroarray.R |only DRomics-2.6.3/DRomics/tests/testwithnoreplicate.R |only DRomics-2.6.3/DRomics/vignettes/DRomics_vignette.Rmd | 6 58 files changed, 1606 insertions(+), 777 deletions(-)
Title: The Beta-Danish Distribution for Lifetime Data Analysis
Description: Implements the four-parameter Beta-Danish distribution and its
three-parameter Exponentiated Danish submodel for survival, reliability
and lifetime data analysis, following Ahmad and Danish (2025)
<doi:10.2478/jamsi-2025-0010>. Density, distribution, quantile, survival,
hazard and random generation functions are evaluated so as to retain
accuracy in the heavy upper tail, where the survival function is regularly
varying. Estimation covers maximum likelihood for complete and
right-censored samples, ridge-penalized fitting for weakly identified
regimes, a grouped likelihood for times recorded on a coarse grid, and
Bayesian sampling. Inference provides log-scale Wald and profile
likelihood intervals, together with a reparameterization in terms of the
identified composite of the two shape parameters. Structural properties
include raw, incomplete and conditional moments with their existence
conditions, Shannon, Renyi and Tsallis entropies, mean residual life,
mean deviations, Lorenz an [...truncated...]
Author: Bilal Ahmad [aut, cre],
Muhammad Yameen Danish [aut]
Maintainer: Bilal Ahmad <bilalahmad.imcbh9@gmail.com>
Diff between BetaDanish versions 0.2.0 dated 2026-06-03 and 0.3.0 dated 2026-07-31
BetaDanish-0.2.0/BetaDanish/R/entropy.R |only BetaDanish-0.2.0/BetaDanish/data/brain_cancer.rda |only BetaDanish-0.2.0/BetaDanish/man/bd_entropy_shannon.Rd |only BetaDanish-0.2.0/BetaDanish/man/brain_cancer.Rd |only BetaDanish-0.3.0/BetaDanish/DESCRIPTION | 35 BetaDanish-0.3.0/BetaDanish/MD5 | 177 ++- BetaDanish-0.3.0/BetaDanish/NAMESPACE | 45 BetaDanish-0.3.0/BetaDanish/NEWS.md | 370 ++++++ BetaDanish-0.3.0/BetaDanish/R/BetaDanish-package.R | 68 - BetaDanish-0.3.0/BetaDanish/R/advanced_methods.R | 216 ++- BetaDanish-0.3.0/BetaDanish/R/aft_models.R | 184 +-- BetaDanish-0.3.0/BetaDanish/R/analyze_csv.R |only BetaDanish-0.3.0/BetaDanish/R/compare_models.R | 250 ++-- BetaDanish-0.3.0/BetaDanish/R/competing_risks.R | 549 ++++++---- BetaDanish-0.3.0/BetaDanish/R/csv_template.R |only BetaDanish-0.3.0/BetaDanish/R/cure_models.R | 282 ++--- BetaDanish-0.3.0/BetaDanish/R/data.R | 327 +++-- BetaDanish-0.3.0/BetaDanish/R/data_helpers.R | 397 +++++-- BetaDanish-0.3.0/BetaDanish/R/dist_functions.R | 349 ++++-- BetaDanish-0.3.0/BetaDanish/R/ed_api.R |only BetaDanish-0.3.0/BetaDanish/R/fit_models.R | 499 ++++++--- BetaDanish-0.3.0/BetaDanish/R/inference.R |only BetaDanish-0.3.0/BetaDanish/R/moments.R |only BetaDanish-0.3.0/BetaDanish/R/plots_extra.R |only BetaDanish-0.3.0/BetaDanish/R/plotting.R | 160 +- BetaDanish-0.3.0/BetaDanish/R/plotting_extras.R | 94 + BetaDanish-0.3.0/BetaDanish/R/report.R | 118 +- BetaDanish-0.3.0/BetaDanish/R/report_betadanish.R | 118 +- BetaDanish-0.3.0/BetaDanish/R/simulation.R | 246 ++-- BetaDanish-0.3.0/BetaDanish/R/simulation_study.R |only BetaDanish-0.3.0/BetaDanish/R/structural.R |only BetaDanish-0.3.0/BetaDanish/R/summary_methods.R | 252 ++-- BetaDanish-0.3.0/BetaDanish/R/utils-internal.R | 203 +++ BetaDanish-0.3.0/BetaDanish/R/utils-validation.R | 94 - BetaDanish-0.3.0/BetaDanish/R/zzz.R | 6 BetaDanish-0.3.0/BetaDanish/README.md | 151 ++ BetaDanish-0.3.0/BetaDanish/build/vignette.rds |binary BetaDanish-0.3.0/BetaDanish/data/guinea_pig.rda |only BetaDanish-0.3.0/BetaDanish/inst/CITATION | 76 + BetaDanish-0.3.0/BetaDanish/inst/WORDLIST | 192 +-- BetaDanish-0.3.0/BetaDanish/inst/doc/BetaDanish_Introduction.R | 35 BetaDanish-0.3.0/BetaDanish/inst/doc/BetaDanish_Introduction.Rmd | 352 +++--- BetaDanish-0.3.0/BetaDanish/inst/doc/BetaDanish_Introduction.html | 68 + BetaDanish-0.3.0/BetaDanish/inst/doc/bd-bayesian.R | 70 - BetaDanish-0.3.0/BetaDanish/inst/doc/bd-bayesian.html | 94 + BetaDanish-0.3.0/BetaDanish/inst/doc/bd-competing-risks.R | 12 BetaDanish-0.3.0/BetaDanish/inst/doc/bd-competing-risks.Rmd | 41 BetaDanish-0.3.0/BetaDanish/inst/doc/bd-competing-risks.html | 48 BetaDanish-0.3.0/BetaDanish/inst/doc/bd-csv-workflow.R |only BetaDanish-0.3.0/BetaDanish/inst/doc/bd-csv-workflow.Rmd |only BetaDanish-0.3.0/BetaDanish/inst/doc/bd-csv-workflow.html |only BetaDanish-0.3.0/BetaDanish/inst/doc/bd-cure-models.html | 50 BetaDanish-0.3.0/BetaDanish/inst/doc/betadanish-case-study.Rmd | 96 - BetaDanish-0.3.0/BetaDanish/inst/doc/betadanish-case-study.html | 65 - BetaDanish-0.3.0/BetaDanish/inst/extdata |only BetaDanish-0.3.0/BetaDanish/man/BetaDanish-package.Rd | 29 BetaDanish-0.3.0/BetaDanish/man/BetaDanish.Rd | 82 + BetaDanish-0.3.0/BetaDanish/man/ExponentiatedDanish.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_analyze_csv.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_conditional_moment.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_csv_template.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_entropy.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_hazard_shape.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_identified_coef.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_incomplete_moment.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_lorenz.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_mean_deviation.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_moment_summary.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_moments.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_mrl.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_order_stat_cdf.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_profile_ci.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_profile_plot.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_pwm.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_simulation_competing.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_simulation_cure.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_simulation_study.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_stress_strength.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_tail_index.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_ttt_plot.Rd |only BetaDanish-0.3.0/BetaDanish/man/bd_wald_ci.Rd |only BetaDanish-0.3.0/BetaDanish/man/carbon_fibres.Rd | 4 BetaDanish-0.3.0/BetaDanish/man/cif_betadanish.Rd | 40 BetaDanish-0.3.0/BetaDanish/man/fit_bd_aft.Rd | 2 BetaDanish-0.3.0/BetaDanish/man/fit_bd_competing.Rd | 108 + BetaDanish-0.3.0/BetaDanish/man/fit_betadanish.Rd | 131 +- BetaDanish-0.3.0/BetaDanish/man/guinea_pig.Rd |only BetaDanish-0.3.0/BetaDanish/man/melanoma.Rd | 2 BetaDanish-0.3.0/BetaDanish/man/plot.bd_aft.Rd | 25 BetaDanish-0.3.0/BetaDanish/man/plot.bd_bayes.Rd |only BetaDanish-0.3.0/BetaDanish/man/read_survival_data.Rd | 101 + BetaDanish-0.3.0/BetaDanish/man/report_betadanish.Rd | 30 BetaDanish-0.3.0/BetaDanish/man/simulate_bd_competing_data.Rd |only BetaDanish-0.3.0/BetaDanish/tests/testthat.R | 24 BetaDanish-0.3.0/BetaDanish/tests/testthat/test-advanced-models.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-analyze-csv.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-compare_models.R | 46 BetaDanish-0.3.0/BetaDanish/tests/testthat/test-cr-simulation.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-data-layer.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-degeneracy-transplant.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-degeneracy.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-dist_functions.R | 131 +- BetaDanish-0.3.0/BetaDanish/tests/testthat/test-estimation.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-fit_models.R | 52 BetaDanish-0.3.0/BetaDanish/tests/testthat/test-identifiability.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-integration-args.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-moments.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-numerics-tail.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-plots-extra.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-plotting.R | 26 BetaDanish-0.3.0/BetaDanish/tests/testthat/test-report-betadanish.R | 24 BetaDanish-0.3.0/BetaDanish/tests/testthat/test-structural.R |only BetaDanish-0.3.0/BetaDanish/tests/testthat/test-summary_methods.R | 38 BetaDanish-0.3.0/BetaDanish/vignettes/BetaDanish_Introduction.Rmd | 352 +++--- BetaDanish-0.3.0/BetaDanish/vignettes/bd-competing-risks.Rmd | 41 BetaDanish-0.3.0/BetaDanish/vignettes/bd-csv-workflow.Rmd |only BetaDanish-0.3.0/BetaDanish/vignettes/betadanish-case-study.Rmd | 96 - 117 files changed, 5066 insertions(+), 2707 deletions(-)
Title: Bayesian Estimation of Nonlinear Data (BEND)
Description: Provides a set of models to estimate nonlinear longitudinal data using Bayesian estimation methods. These models include the: 1) Bayesian Piecewise Random Effects Model (Bayes_PREM()) which estimates a piecewise random effects (mixture) model for a given number of latent classes and a latent number of possible changepoints in each class, and can incorporate class and outcome predictive covariates (see Lamm (2022) <https://hdl.handle.net/11299/252533> and Lock et al., (2018) <doi:10.1007/s11336-017-9594-5>), 2) Bayesian Crossed Random Effects Model (Bayes_CREM()) which estimates a linear, quadratic, exponential, or piecewise crossed random effects models where individuals are changing groups over time (e.g., students and schools; see Rohloff et al., (2024) <doi:10.1111/bmsp.12334>), and 3) Bayesian Bivariate Piecewise Random Effects Model (Bayes_BPREM()) which estimates a bivariate piecewise random effects model to jointly model two related outcomes (e.g., reading and [...truncated...]
Author: Corissa T. Rohloff [aut, cre] ,
Rik Lamm [aut] ,
Yadira Peralta [aut] ,
Nidhi Kohli [aut] ,
Eric F. Lock [aut]
Maintainer: Corissa T. Rohloff <corissa.wurth@gmail.com>
Diff between BEND versions 2.1.0 dated 2026-07-10 and 2.1.1 dated 2026-07-31
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/plot_BEND.R | 1 - 4 files changed, 10 insertions(+), 7 deletions(-)
More information about olympicAthletes at CRAN
Permanent link
Title: Read and Manipulate Camera Trap Data Packages
Description: Read and manipulate Camera Trap Data Packages ('Camtrap DP').
'Camtrap DP' (<https://camtrap-dp.tdwg.org>) is a data exchange format
for camera trap data. With 'camtrapdp' you can read, filter and
transform data (including to Darwin Core) before further analysis in
e.g. 'camtraptor' or 'camtrapR'.
Author: Peter Desmet [aut, cre] ),
Sanne Govaert [aut] ),
Pieter Huybrechts [aut] ),
Damiano Oldoni [aut] ),
Research Institute for Nature and Forest [cph] ,
Research Foundation - Flanders [fnd]
Maintainer: Peter Desmet <peter.desmet@inbo.be>
Diff between camtrapdp versions 0.5.0 dated 2026-01-14 and 0.6.0 dated 2026-07-31
camtrapdp-0.5.0/camtrapdp/R/utils-pipe.R |only camtrapdp-0.5.0/camtrapdp/man/pipe.Rd |only camtrapdp-0.6.0/camtrapdp/DESCRIPTION | 16 - camtrapdp-0.6.0/camtrapdp/LICENSE | 2 camtrapdp-0.6.0/camtrapdp/MD5 | 142 ++++------ camtrapdp-0.6.0/camtrapdp/NAMESPACE | 2 camtrapdp-0.6.0/camtrapdp/NEWS.md | 11 camtrapdp-0.6.0/camtrapdp/R/camtrapdp-package.R | 2 camtrapdp-0.6.0/camtrapdp/R/check_camtrapdp.R | 4 camtrapdp-0.6.0/camtrapdp/R/contributors.R | 14 camtrapdp-0.6.0/camtrapdp/R/deployments.R | 6 camtrapdp-0.6.0/camtrapdp/R/events.R | 6 camtrapdp-0.6.0/camtrapdp/R/example_dataset.R | 2 camtrapdp-0.6.0/camtrapdp/R/filter_deployments.R | 24 - camtrapdp-0.6.0/camtrapdp/R/filter_media.R | 22 - camtrapdp-0.6.0/camtrapdp/R/filter_observations.R | 42 +- camtrapdp-0.6.0/camtrapdp/R/individuals.R | 6 camtrapdp-0.6.0/camtrapdp/R/locations.R | 4 camtrapdp-0.6.0/camtrapdp/R/media.R | 2 camtrapdp-0.6.0/camtrapdp/R/merge_camtrapdp.R | 10 camtrapdp-0.6.0/camtrapdp/R/observations.R | 2 camtrapdp-0.6.0/camtrapdp/R/print.R | 4 camtrapdp-0.6.0/camtrapdp/R/read_camtrapdp.R | 8 camtrapdp-0.6.0/camtrapdp/R/round_coordinates.R | 14 camtrapdp-0.6.0/camtrapdp/R/shift_time.R | 16 - camtrapdp-0.6.0/camtrapdp/R/taxa.R | 32 +- camtrapdp-0.6.0/camtrapdp/R/taxonomic.R | 12 camtrapdp-0.6.0/camtrapdp/R/update_metadata.R | 30 +- camtrapdp-0.6.0/camtrapdp/R/update_taxon.R | 16 - camtrapdp-0.6.0/camtrapdp/R/upgrade.R | 2 camtrapdp-0.6.0/camtrapdp/R/utils-merge.R | 16 - camtrapdp-0.6.0/camtrapdp/R/utils.R | 24 - camtrapdp-0.6.0/camtrapdp/R/version.R | 2 camtrapdp-0.6.0/camtrapdp/R/write_camtrapdp.R | 19 - camtrapdp-0.6.0/camtrapdp/R/write_dwc.R | 42 +- camtrapdp-0.6.0/camtrapdp/R/write_eml.R | 12 camtrapdp-0.6.0/camtrapdp/README.md | 21 - camtrapdp-0.6.0/camtrapdp/build/partial.rdb |binary camtrapdp-0.6.0/camtrapdp/man/camtrapdp-package.Rd | 9 camtrapdp-0.6.0/camtrapdp/man/contributors.Rd | 16 - camtrapdp-0.6.0/camtrapdp/man/deployments.Rd | 16 - camtrapdp-0.6.0/camtrapdp/man/events.Rd | 16 - camtrapdp-0.6.0/camtrapdp/man/filter_deployments.Rd | 22 - camtrapdp-0.6.0/camtrapdp/man/filter_media.Rd | 22 - camtrapdp-0.6.0/camtrapdp/man/filter_observations.Rd | 30 +- camtrapdp-0.6.0/camtrapdp/man/individuals.Rd | 16 - camtrapdp-0.6.0/camtrapdp/man/locations.Rd | 16 - camtrapdp-0.6.0/camtrapdp/man/media.Rd | 16 - camtrapdp-0.6.0/camtrapdp/man/merge_camtrapdp.Rd | 16 - camtrapdp-0.6.0/camtrapdp/man/observations.Rd | 16 - camtrapdp-0.6.0/camtrapdp/man/round_coordinates.Rd | 12 camtrapdp-0.6.0/camtrapdp/man/shift_time.Rd | 12 camtrapdp-0.6.0/camtrapdp/man/taxa.Rd | 16 - camtrapdp-0.6.0/camtrapdp/man/update_taxon.Rd | 12 camtrapdp-0.6.0/camtrapdp/man/write_dwc.Rd | 12 camtrapdp-0.6.0/camtrapdp/man/write_eml.Rd | 12 camtrapdp-0.6.0/camtrapdp/tests/testthat/_snaps/merge_camtrapdp/datapackage_different_xy.json | 31 +- camtrapdp-0.6.0/camtrapdp/tests/testthat/_snaps/merge_camtrapdp/datapackage_identical_xy.json | 23 + camtrapdp-0.6.0/camtrapdp/tests/testthat/_snaps/write_camtrapdp/datapackage.json | 23 + camtrapdp-0.6.0/camtrapdp/tests/testthat/helper.R | 28 + camtrapdp-0.6.0/camtrapdp/tests/testthat/test-contributors.R | 4 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-filter_deployments.R | 2 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-filter_media.R | 2 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-merge_camtrapdp.R | 8 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-print.R | 2 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-read_camtrapdp.R | 2 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-round_coordinates.R | 2 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-taxa.R | 10 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-taxonomic.R | 4 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-update_taxon.R | 4 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-write_camtrapdp.R | 2 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-write_dwc.R | 4 camtrapdp-0.6.0/camtrapdp/tests/testthat/test-write_eml.R | 4 73 files changed, 558 insertions(+), 473 deletions(-)
Title: Tidy Approach to 'NetCDF' Data Exploration and Extraction
Description: Tidy tools for 'NetCDF' data sources. Explore the contents of a
'NetCDF' source (file or URL) presented as variables organized by grid with a
database-like interface. The hyper_filter() interactive function translates the
filter value or index expressions to array-slicing form. No data is read until
explicitly requested, as a data frame or list of arrays via hyper_tibble() or
hyper_array().
Author: Michael Sumner [aut, cre, cph],
Simon Wotherspoon [ctb],
Tomas Remenyi [ctb],
Ben Raymond [ctb],
Jakub Nowosad [ctb],
Tim Lucas [ctb],
Hadley Wickham [ctb],
Adrian Odenweller [ctb],
Patrick Van Laake [ctb],
Fabian Bernhard [ctb]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between tidync versions 0.4.0 dated 2024-08-17 and 0.5.0 dated 2026-07-31
tidync-0.4.0/tidync/R/magrittr-pipe.R |only tidync-0.4.0/tidync/man/reexports.Rd |only tidync-0.5.0/tidync/DESCRIPTION | 23 tidync-0.5.0/tidync/MD5 | 84 - tidync-0.5.0/tidync/NAMESPACE | 5 tidync-0.5.0/tidync/NEWS.md | 98 + tidync-0.5.0/tidync/R/activate.R | 22 tidync-0.5.0/tidync/R/hyper_array.R | 301 ++++- tidync-0.5.0/tidync/R/hyper_filter.R | 13 tidync-0.5.0/tidync/R/hyper_tbl_cube.R | 16 tidync-0.5.0/tidync/R/hyper_tibble.R | 36 tidync-0.5.0/tidync/R/hyper_transforms.R | 71 - tidync-0.5.0/tidync/R/hyper_vars_dims.R | 8 tidync-0.5.0/tidync/R/netcdf-utils.R | 37 tidync-0.5.0/tidync/R/tidync-package.R | 20 tidync-0.5.0/tidync/R/tidync.R | 476 +++++++- tidync-0.5.0/tidync/R/tidync_data.R | 12 tidync-0.5.0/tidync/R/zzz.R | 5 tidync-0.5.0/tidync/README.md | 63 - tidync-0.5.0/tidync/build/vignette.rds |binary tidync-0.5.0/tidync/inst/doc/netcdf-with-tidync.R | 36 tidync-0.5.0/tidync/inst/doc/netcdf-with-tidync.Rmd | 36 tidync-0.5.0/tidync/inst/doc/netcdf-with-tidync.html | 549 +++++----- tidync-0.5.0/tidync/man/hyper_array.Rd | 16 tidync-0.5.0/tidync/man/hyper_filter.Rd | 8 tidync-0.5.0/tidync/man/hyper_tbl_cube.Rd | 2 tidync-0.5.0/tidync/man/hyper_tibble.Rd | 12 tidync-0.5.0/tidync/man/hyper_transforms.Rd | 2 tidync-0.5.0/tidync/man/hyper_vars.Rd | 2 tidync-0.5.0/tidync/man/nc_get.Rd | 9 tidync-0.5.0/tidync/man/print.tidync.Rd | 11 tidync-0.5.0/tidync/man/print.tidync_data.Rd | 2 tidync-0.5.0/tidync/man/tidync-package.Rd | 29 tidync-0.5.0/tidync/man/tidync.Rd | 67 + tidync-0.5.0/tidync/tests/testthat/test-activate.R | 8 tidync-0.5.0/tidync/tests/testthat/test-dimensions.R | 12 tidync-0.5.0/tidync/tests/testthat/test-files-sources.R | 19 tidync-0.5.0/tidync/tests/testthat/test-filter.R | 16 tidync-0.5.0/tidync/tests/testthat/test-hyper-slice.R | 26 tidync-0.5.0/tidync/tests/testthat/test-multi-source-regressions.R |only tidync-0.5.0/tidync/tests/testthat/test-multi-source.R |only tidync-0.5.0/tidync/tests/testthat/test-select_var.R | 6 tidync-0.5.0/tidync/tests/testthat/test-tbl_cube.R | 2 tidync-0.5.0/tidync/tests/testthat/test-thredds.R | 6 tidync-0.5.0/tidync/vignettes/netcdf-with-tidync.Rmd | 36 45 files changed, 1446 insertions(+), 756 deletions(-)
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include 'Microsoft SQL Server', 'Oracle',
'PostgreSql', 'Amazon RedShift', 'Apache Impala', 'IBM Netezza', 'Google BigQuery', 'Microsoft PDW', 'Snowflake',
'Azure Synapse Analytics Dedicated', 'Apache Spark', 'SQLite', and 'InterSystems IRIS'.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.19.5 dated 2026-03-25 and 1.19.6 dated 2026-07-31
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ inst/csv/replacementPatterns.csv | 6 +++--- inst/doc/UsingSqlRender.pdf |binary man/SqlRender-package.Rd | 1 + tests/testthat/test-translate-spark.R | 15 ++++++++++++--- 7 files changed, 35 insertions(+), 17 deletions(-)
Title: Test of No Group Discrimination Using the WMW Statistic
Description: Implements a wmwAUC test of H0: AUC = 1/2 for continuous, discrete, or mixed random variables, based on the Wilcoxon-Mann-Whitney (WMW) statistic. The classic WMW test is calibrated under H0: {(F, G): F = G} which does not match the set {(F, G): AUC = 1/2}, implied by the test statistic, and consequently leads to erroneous inferences. wmwAUC is calibrated under the correct null and implements two finite-sample corrected p-value methods: an Exact Unbiased (EU) method and a Bias-Corrected (BC) method, both valid for any tie pattern. Methods are described in M. Grendar (2025) "Wilcoxon-Mann-Whitney Test of No Group Discrimination" <doi:10.48550/arXiv.2511.20308>.
Author: Marian Grendar [aut, cre]
Maintainer: Marian Grendar <marian.grendar@gmail.com>
Diff between wmwAUC versions 0.2.0 dated 2025-12-19 and 1.0.0 dated 2026-07-31
wmwAUC-0.2.0/wmwAUC/R/add_simultaneous_bands.R |only wmwAUC-0.2.0/wmwAUC/R/plot.wmw_test.R |only wmwAUC-0.2.0/wmwAUC/R/print.wmw_test.R |only wmwAUC-0.2.0/wmwAUC/R/pseudomedian_ci.R |only wmwAUC-0.2.0/wmwAUC/R/quadruplot.R |only wmwAUC-0.2.0/wmwAUC/R/test_shift_equivalence.R |only wmwAUC-0.2.0/wmwAUC/R/wmw_pvalue.R |only wmwAUC-0.2.0/wmwAUC/R/wmw_pvalue_ties.R |only wmwAUC-0.2.0/wmwAUC/R/wmw_test.R |only wmwAUC-0.2.0/wmwAUC/data/Ex2.rda |only wmwAUC-0.2.0/wmwAUC/data/simulation3.rda |only wmwAUC-0.2.0/wmwAUC/man/Ex2.Rd |only wmwAUC-0.2.0/wmwAUC/man/add_simultaneous_bands_sfsmisc.Rd |only wmwAUC-0.2.0/wmwAUC/man/calc_simultaneous_ecdf_bands_sfsmisc.Rd |only wmwAUC-0.2.0/wmwAUC/man/figures/README-Ex3-1.png |only wmwAUC-0.2.0/wmwAUC/man/figures/README-Ex3-2.png |only wmwAUC-0.2.0/wmwAUC/man/figures/README-Ex3-3.png |only wmwAUC-0.2.0/wmwAUC/man/figures/README-ROC_example2-1.png |only wmwAUC-0.2.0/wmwAUC/man/figures/README-example2-1.png |only wmwAUC-0.2.0/wmwAUC/man/figures/README-example2-2.png |only wmwAUC-0.2.0/wmwAUC/man/figures/README-plot_ex3-1.png |only wmwAUC-0.2.0/wmwAUC/man/figures/README-quadruplot_Ex2-1.png |only wmwAUC-0.2.0/wmwAUC/man/figures/README-quadruplot_Ex3-1.png |only wmwAUC-0.2.0/wmwAUC/man/figures/README-roc_Ex3-1.png |only wmwAUC-0.2.0/wmwAUC/man/plot.wmw_test.Rd |only wmwAUC-0.2.0/wmwAUC/man/print.wmw_test.Rd |only wmwAUC-0.2.0/wmwAUC/man/pseudomedian_ci.Rd |only wmwAUC-0.2.0/wmwAUC/man/quadruplot.Rd |only wmwAUC-0.2.0/wmwAUC/man/simulation3.Rd |only wmwAUC-0.2.0/wmwAUC/man/test_shift_equivalence.Rd |only wmwAUC-0.2.0/wmwAUC/man/wmw_pvalue.Rd |only wmwAUC-0.2.0/wmwAUC/man/wmw_pvalue_ties.Rd |only wmwAUC-0.2.0/wmwAUC/man/wmw_test.Rd |only wmwAUC-1.0.0/wmwAUC/DESCRIPTION | 17 wmwAUC-1.0.0/wmwAUC/MD5 | 78 -- wmwAUC-1.0.0/wmwAUC/NAMESPACE | 15 wmwAUC-1.0.0/wmwAUC/NEWS.md |only wmwAUC-1.0.0/wmwAUC/R/data.R | 26 wmwAUC-1.0.0/wmwAUC/R/globals.R | 2 wmwAUC-1.0.0/wmwAUC/R/plot.wmwAUC_test.R |only wmwAUC-1.0.0/wmwAUC/R/plot_roc.R | 11 wmwAUC-1.0.0/wmwAUC/R/print.wmwAUC_test.R |only wmwAUC-1.0.0/wmwAUC/R/roc_with_ci.R | 63 + wmwAUC-1.0.0/wmwAUC/R/wmwAUC-deprecated.R |only wmwAUC-1.0.0/wmwAUC/R/wmwAUC_pseudomedian_ci.R |only wmwAUC-1.0.0/wmwAUC/R/wmwAUC_pvalue_BC.R |only wmwAUC-1.0.0/wmwAUC/R/wmwAUC_pvalue_EU.R |only wmwAUC-1.0.0/wmwAUC/R/wmwAUC_test.R |only wmwAUC-1.0.0/wmwAUC/README.md | 318 ++-------- wmwAUC-1.0.0/wmwAUC/data/simulation1.rda |binary wmwAUC-1.0.0/wmwAUC/data/simulation2.rda |binary wmwAUC-1.0.0/wmwAUC/man/figures/README-hist_sim1_3-1.png |binary wmwAUC-1.0.0/wmwAUC/man/figures/README-hist_sim2-2.png |binary wmwAUC-1.0.0/wmwAUC/man/figures/README-plot_ex1-1.png |binary wmwAUC-1.0.0/wmwAUC/man/plot.wmwAUC_test.Rd |only wmwAUC-1.0.0/wmwAUC/man/print.wmwAUC_test.Rd |only wmwAUC-1.0.0/wmwAUC/man/roc_with_ci.Rd | 9 wmwAUC-1.0.0/wmwAUC/man/simulation1.Rd | 2 wmwAUC-1.0.0/wmwAUC/man/simulation2.Rd | 2 wmwAUC-1.0.0/wmwAUC/man/wmwAUC-deprecated.Rd |only wmwAUC-1.0.0/wmwAUC/man/wmwAUC_pseudomedian_ci.Rd |only wmwAUC-1.0.0/wmwAUC/man/wmwAUC_pvalue_BC.Rd |only wmwAUC-1.0.0/wmwAUC/man/wmwAUC_pvalue_EU.Rd |only wmwAUC-1.0.0/wmwAUC/man/wmwAUC_test.Rd |only 64 files changed, 182 insertions(+), 361 deletions(-)
Title: Statistical Data Visualization, the 'seaborn' Way
Description: An 'R' port of the 'Python' 'seaborn' library. 'reaborn' mirrors the
'seaborn' public function API (identical function names, argument names, and
defaults) and renders visually indistinguishable plots using 'ggplot2'.
Because every 'reaborn' plot is a 'ggplot' object, it can be extended with the
full 'ggplot2' grammar of graphics.
Author: Shawn Schwartz [aut, cre]
Maintainer: Shawn Schwartz <shawn.t.schwartz@gmail.com>
Diff between reaborn versions 1.0.1 dated 2026-07-03 and 1.0.2 dated 2026-07-31
DESCRIPTION | 7 - MD5 | 26 +++--- NEWS.md | 14 +++ R/categorical-complex.R | 12 ++ R/categorical.R | 49 ++++++++++- R/core-plot-object.R | 74 +++++++++++++++++ R/relational.R | 4 inst/WORDLIST | 5 + man/figures/compare-line.png |binary man/figures/compare-reg.png |binary man/figures/compare-relplot.png |binary man/figures/hero-collage.png |binary man/plus-.reaborn_plot.Rd | 9 ++ tests/testthat/test-categorical.R | 159 ++++++++++++++++++++++++++++++++++++++ 14 files changed, 334 insertions(+), 25 deletions(-)
Title: List Things to Do
Description: Manage a 'GitHub' problem using R: wrangle issues, labels and
milestones. It includes functions for storing, prioritizing (sorting),
displaying, adding, deleting, and selecting (filtering) issues based
on qualitative and quantitative information. Issues (labels and
milestones) are written in lists and categorized into the S3 class to
be easily manipulated as datasets in R.
Author: Tanguy Barthelemy [aut, cre, art, cph]
Maintainer: Tanguy Barthelemy <tanguy.barthelemy@insee.fr>
Diff between IssueTrackeR versions 1.4.0 dated 2026-06-20 and 1.4.1 dated 2026-07-31
IssueTrackeR-1.4.0/IssueTrackeR/tests/testthat/test-get_issues.R |only IssueTrackeR-1.4.1/IssueTrackeR/DESCRIPTION | 13 IssueTrackeR-1.4.1/IssueTrackeR/MD5 | 68 + IssueTrackeR-1.4.1/IssueTrackeR/NAMESPACE | 4 IssueTrackeR-1.4.1/IssueTrackeR/NEWS.md | 13 IssueTrackeR-1.4.1/IssueTrackeR/R/check.R | 382 ++++++---- IssueTrackeR-1.4.1/IssueTrackeR/R/finding-objects.R | 10 IssueTrackeR-1.4.1/IssueTrackeR/R/format.R | 3 IssueTrackeR-1.4.1/IssueTrackeR/R/plot.R | 253 ++++++ IssueTrackeR-1.4.1/IssueTrackeR/R/print.R | 3 IssueTrackeR-1.4.1/IssueTrackeR/R/utils.R | 47 + IssueTrackeR-1.4.1/IssueTrackeR/R/wrangling_dataset_issues.R | 61 + IssueTrackeR-1.4.1/IssueTrackeR/R/wrangling_dataset_milestones.R | 48 + IssueTrackeR-1.4.1/IssueTrackeR/R/wrangling_issues.R | 101 ++ IssueTrackeR-1.4.1/IssueTrackeR/R/write.R | 91 ++ IssueTrackeR-1.4.1/IssueTrackeR/README.md | 9 IssueTrackeR-1.4.1/IssueTrackeR/inst/WORDLIST | 5 IssueTrackeR-1.4.1/IssueTrackeR/man/IssueTrackeR-package.Rd | 4 IssueTrackeR-1.4.1/IssueTrackeR/man/append.Rd | 13 IssueTrackeR-1.4.1/IssueTrackeR/man/generate_age_mat.Rd |only IssueTrackeR-1.4.1/IssueTrackeR/man/github_errors.Rd |only IssueTrackeR-1.4.1/IssueTrackeR/man/print.Rd | 2 IssueTrackeR-1.4.1/IssueTrackeR/man/rbind.Rd |only IssueTrackeR-1.4.1/IssueTrackeR/man/sample-issues.Rd | 11 IssueTrackeR-1.4.1/IssueTrackeR/man/subset.Rd |only IssueTrackeR-1.4.1/IssueTrackeR/man/unique-issues.Rd | 12 IssueTrackeR-1.4.1/IssueTrackeR/man/write.Rd | 21 IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/data/check-results.rds |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/helper.R | 64 + IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-add_n_years.R |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-bin_count.R |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-check.R | 256 ++++-- IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-extract.R | 56 - IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-finding.R |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-format_timestamp.R | 26 IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-get.R |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-isDark.R |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-null_to_default.R |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-options.R |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-plot.R |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-print.R |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-summary.R |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-update_database.R |only IssueTrackeR-1.4.1/IssueTrackeR/tests/testthat/test-write.R |only 44 files changed, 1240 insertions(+), 336 deletions(-)
Title: File System Contextualisation and Record Set Reconstruction
Description: Provides a provenance-aware framework for contextual reconstruction from
file systems and related digital resource collections. The package creates
reproducible snapshots of file-level metadata, paths, repository context,
and optional content signatures. It supports contextual grouping, structural
abstraction, temporal analysis, semantic stabilization, duplicate and reuse
detection, and lightweight workflow reconstruction from file system
observations. The framework deliberately separates observational evidence,
contextual abstraction, semantic interpretation, and analytical
reconstruction, enabling reproducible workflows that can be inspected by
reviewers. It is designed to support future alignment with archival and
contextual knowledge representation models, including the World Wide Web
Consortium Provenance Ontology (PROV-O): Lebo et al. (2013)
<https://www.w3.org/TR/prov-o/>
and Records in Contexts developed by the International Council on Archives
Expert Group on Archival De [...truncated...]
Author: Daniel Antal [aut, cre]
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
Diff between fscontext versions 0.2.0 dated 2026-07-06 and 0.2.1 dated 2026-07-31
DESCRIPTION | 6 - MD5 | 20 ++- NEWS.md | 7 + R/scan_storage.R | 196 ++++++++++++++++++++++------------ README.md | 33 ++++- build/vignette.rds |binary inst/doc/file_organisation.R |only inst/doc/file_organisation.Rmd |only inst/doc/file_organisation.html |only inst/doc/recordset_df.html | 16 +- inst/doc/structural_aggregations.html | 14 +- tests/testthat/test-scan_storage.R | 62 ++++++++++ vignettes/file_organisation.Rmd |only 13 files changed, 251 insertions(+), 103 deletions(-)
Title: Automatic Generation of Exams in R
Description: Automatic generation of exams based on exercises in Markdown or LaTeX format,
possibly including R code for dynamic generation of exercise elements.
Exercise types include single-choice and multiple-choice questions, arithmetic problems,
string questions, and combinations thereof (cloze). Output formats include standalone
files (PDF, HTML, Docx, ODT, ...), Moodle XML, QTI 1.2, QTI 2.1, Blackboard, Canvas, OpenOlat, ILIAS, TestVision,
Particify, ARSnova, Kahoot!, Grasple, and TCExam. In addition to fully customizable PDF exams, a standardized PDF format
(NOPS) is provided that can be printed, scanned, and automatically evaluated.
Author: Achim Zeileis [aut, cre] ,
Bettina Gruen [aut] ,
Friedrich Leisch [aut] ,
Nikolaus Umlauf [aut] ,
Niels Smits [aut] ,
Mirko Birbaumer [ctb],
Dominik Ernst [ctb] ,
Patrik Keller [ctb],
Reto Stauffer [ctb] ,
Kenji Sato [ctb] ,
Florian Wickelmaier [ctb] [...truncated...]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams versions 2.4-3 dated 2025-12-23 and 2.4-4 dated 2026-07-31
DESCRIPTION | 8 +++--- MD5 | 56 +++++++++++++++++++++---------------------- NEWS.md | 20 +++++++++++++++ R/exams2nops.R | 9 +++++- R/exams_eval.R | 4 +-- R/fileURI.R | 11 +++++++- R/formatters.R | 2 - R/nops_fix.R | 2 - R/pandoc.R | 2 - R/transformers.R | 2 - R/xexams.R | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/exams.R | 2 - inst/doc/exams.pdf |binary inst/doc/exams2.R | 2 - inst/doc/exams2.pdf |binary inst/pandoc/plain.tex | 2 + inst/tex/exam.tex | 2 + inst/tex/form.tex | 2 + inst/tex/plain-highlight.tex | 2 + inst/tex/plain.tex | 2 + inst/tex/plain8.tex | 2 + inst/tex/solution.tex | 2 + inst/xml/canvas_qti12.xml | 11 -------- man/add_cloze.Rd | 2 - man/exams2blackboard.Rd | 4 +-- man/exams2wooclap.Rd | 5 --- vignettes/exams.bib | 4 +-- 29 files changed, 97 insertions(+), 65 deletions(-)
Title: Simulate Data from a (Time-Dependent) Causal DAG
Description: Simulate complex data from a given directed acyclic graph and information about each individual node.
Root nodes are simply sampled from the specified distribution. Child Nodes are simulated according to
one of many implemented regressions, such as logistic regression, linear
regression, poisson regression or any other function. Also includes a comprehensive framework for discrete-time
simulation, discrete-event simulation, and networks-based simulation which can generate even more complex longitudinal and dependent data.
For more details, see Robin Denz, Nina Timmesfeld (2026) <doi:10.18637/jss.v116.i02>.
Author: Robin Denz [aut, cre],
Katharina Meiszl [aut]
Maintainer: Robin Denz <robin.denz@rub.de>
Diff between simDAG versions 1.0.0 dated 2026-05-14 and 1.0.1 dated 2026-07-31
DESCRIPTION | 6 - MD5 | 28 ++--- NEWS.md | 6 + R/node_cox.r | 21 ++-- README.md | 2 inst/doc/simDAG.html | 2 inst/doc/v_cookbook.R | 38 +++---- inst/doc/v_cookbook.Rmd | 4 inst/doc/v_cookbook.html | 189 ++++++++++++++++-------------------- inst/doc/v_covid_example.html | 2 man/node_binomial.Rd | 2 man/node_poisson.Rd | 2 tests/testthat/test_node_lmer.r | 2 tests/testthat/test_node_zeroinfl.r | 2 vignettes/v_cookbook.Rmd | 4 15 files changed, 152 insertions(+), 158 deletions(-)
Title: Standard Methods for Use in Public Health Scotland
Description: A collection of methods for commonly undertaken analytical
tasks, primarily developed for Public Health Scotland (PHS) analysts,
but the package is also generally useful to others working in the
healthcare space, particularly since it has functions for working with
Community Health Index (CHI) numbers. The package can help to make
data manipulation and analysis more efficient and reproducible.
Author: Public Health Scotland [cph],
David Caldwell [aut],
Lucinda Lawrie [rev],
Jack Hannah [aut],
Tina Fu [aut, cre],
Ciara Gribben [aut],
Chris Deans [aut],
Jaime Villacampa [aut],
Graeme Gowans [aut],
Alice Byers [ctb],
Alan Yeung [ctb],
James Hayes [au [...truncated...]
Maintainer: Tina Fu <Yuyan.Fu2@phs.scot>
Diff between phsmethods versions 1.1.0 dated 2026-03-30 and 1.2.0 dated 2026-07-31
phsmethods-1.1.0/phsmethods/tests/testthat/_snaps/rename.md |only phsmethods-1.2.0/phsmethods/DESCRIPTION | 15 phsmethods-1.2.0/phsmethods/MD5 | 55 phsmethods-1.2.0/phsmethods/NEWS.md | 16 phsmethods-1.2.0/phsmethods/R/age_from_chi.R | 12 phsmethods-1.2.0/phsmethods/R/chi_check.R | 149 +- phsmethods-1.2.0/phsmethods/R/chi_pad.R | 9 phsmethods-1.2.0/phsmethods/R/create_age_groups.R | 176 +- phsmethods-1.2.0/phsmethods/R/dob_from_chi.R | 14 phsmethods-1.2.0/phsmethods/R/sex_from_chi.R | 39 phsmethods-1.2.0/phsmethods/README.md | 2 phsmethods-1.2.0/phsmethods/build/vignette.rds |binary phsmethods-1.2.0/phsmethods/inst/WORDLIST | 16 phsmethods-1.2.0/phsmethods/inst/doc/chi-operations.R | 115 + phsmethods-1.2.0/phsmethods/inst/doc/chi-operations.Rmd | 153 +- phsmethods-1.2.0/phsmethods/inst/doc/chi-operations.html | 679 +++++----- phsmethods-1.2.0/phsmethods/inst/doc/percent.html | 7 phsmethods-1.2.0/phsmethods/man/age_from_chi.Rd | 12 phsmethods-1.2.0/phsmethods/man/chi_check.Rd | 9 phsmethods-1.2.0/phsmethods/man/chi_pad.Rd | 4 phsmethods-1.2.0/phsmethods/man/create_age_groups.Rd | 44 phsmethods-1.2.0/phsmethods/man/dob_from_chi.Rd | 17 phsmethods-1.2.0/phsmethods/man/percent.Rd | 5 phsmethods-1.2.0/phsmethods/man/phsmethods-package.Rd | 1 phsmethods-1.2.0/phsmethods/man/sex_from_chi.Rd | 12 phsmethods-1.2.0/phsmethods/tests/testthat/test-chi_check.R | 43 phsmethods-1.2.0/phsmethods/tests/testthat/test-chi_pad.R | 5 phsmethods-1.2.0/phsmethods/tests/testthat/test-create_age_groups.R | 190 ++ phsmethods-1.2.0/phsmethods/vignettes/chi-operations.Rmd | 153 +- 29 files changed, 1348 insertions(+), 604 deletions(-)
Title: Gradient Boosting for Generalized Additive Mixed Models
Description: Provides a novel framework to estimate mixed models via gradient
boosting. The implemented functions are based on the 'mboost' and 'lme4' packages,
and the family range is therefore determined by 'lme4'. A correction mechanism
for cluster-constant covariates is implemented, as well as estimation of the
covariance of random effects. These methods are described in
the accompanying publication; see <doi:10.1007/s11222-025-10612-y> for details.
Author: Lars Knieper [aut, cre],
Torsten Hothorn [aut],
Elisabeth Bergherr [aut],
Colin Griesbach [aut]
Maintainer: Lars Knieper <lars.knieper@uni-goettingen.de>
Diff between mermboost versions 0.1.1 dated 2025-05-16 and 0.1.2 dated 2026-07-31
DESCRIPTION | 9 +++++---- MD5 | 10 +++++----- NAMESPACE | 2 ++ R/asFamily.R | 2 +- R/internal_functions.R | 21 ++++++++++++--------- R/mermboost_functions.R | 4 ++-- 6 files changed, 27 insertions(+), 21 deletions(-)
Title: Inferential Methods for Multimodal and Other Networks
Description: A set of tools for testing networks.
It includes functions for univariate and multivariate conditional uniform graph
and quadratic assignment procedure testing, and network regression.
The package is a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Built on the 'manynet' package, all functions operate with matrices,
edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode and two-mode (bipartite) networks.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 1.6.6 dated 2026-06-24 and 1.6.8 dated 2026-07-31
migraph-1.6.6/migraph/tests/testthat/test-tutorials_autograph.R |only migraph-1.6.6/migraph/tests/testthat/test-tutorials_manynet.R |only migraph-1.6.8/migraph/DESCRIPTION | 17 +-- migraph-1.6.8/migraph/MD5 | 46 ++++---- migraph-1.6.8/migraph/NAMESPACE | 2 migraph-1.6.8/migraph/NEWS.md | 36 ++++++ migraph-1.6.8/migraph/R/class_makes.R | 8 - migraph-1.6.8/migraph/R/class_models.R | 8 - migraph-1.6.8/migraph/R/model_distrib.R | 2 migraph-1.6.8/migraph/R/model_predict.R | 10 + migraph-1.6.8/migraph/R/model_regression.R | 54 ++++++++-- migraph-1.6.8/migraph/R/model_tests.R | 4 migraph-1.6.8/migraph/R/tutorial_run.R | 16 +- migraph-1.6.8/migraph/build/partial.rdb |binary migraph-1.6.8/migraph/inst/tutorials/tutorial0/tutorial0.Rmd | 18 +-- migraph-1.6.8/migraph/inst/tutorials/tutorial7/diffusion.Rmd | 24 ++-- migraph-1.6.8/migraph/inst/tutorials/tutorial8/diversity.Rmd | 6 - migraph-1.6.8/migraph/inst/tutorials/tutorial9/ergm.Rmd | 8 - migraph-1.6.8/migraph/man/predict.Rd | 10 + migraph-1.6.8/migraph/man/regression.Rd | 2 migraph-1.6.8/migraph/man/tests.Rd | 4 migraph-1.6.8/migraph/tests/testthat/Rplots.pdf |binary migraph-1.6.8/migraph/tests/testthat/test-model_predict.R | 4 migraph-1.6.8/migraph/tests/testthat/test-model_regression.R | 41 +++++++ migraph-1.6.8/migraph/tests/testthat/test-model_tests.R | 4 25 files changed, 215 insertions(+), 109 deletions(-)
Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images.
Contains over 3000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlatio [...truncated...]
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat versions 3.6-1 dated 2026-06-02 and 3.6-2 dated 2026-07-31
DESCRIPTION | 16 ++++---- MD5 | 40 ++++++++++---------- NEWS | 8 ++++ build/vignette.rds |binary inst/doc/NAobjects.pdf |binary inst/doc/bugfixes.Rnw | 11 +++++ inst/doc/bugfixes.pdf |binary inst/doc/datasets.pdf |binary inst/doc/fv.pdf |binary inst/doc/getstart.pdf |binary inst/doc/packagesizes.txt | 1 inst/doc/replicated.pdf |binary inst/doc/shapefiles.pdf |binary inst/doc/updates.R | 17 +++++--- inst/doc/updates.Rnw | 86 +++++++++++++++++++++++++++++++++++++++++---- inst/doc/updates.pdf |binary inst/info/packagesizes.txt | 1 man/macros/defns.Rd | 30 ++++++++++++--- man/spatstat-package.Rd | 1 vignettes/bugfixes.Rnw | 11 +++++ vignettes/updates.Rnw | 86 +++++++++++++++++++++++++++++++++++++++++---- 21 files changed, 252 insertions(+), 56 deletions(-)
Title: Lookup for IP Address Proxy Information
Description: A R package to find the IP addresses which are used as VPN anonymizer, open proxies, web proxies and Tor exits.
The package lookup the proxy IP address from IP2Proxy BIN Data file. You may visit <https://lite.ip2location.com> for free database download.
Author: IP2Location [aut, cre]
Maintainer: IP2Location <support@ip2location.com>
Diff between ip2proxy versions 1.2.0 dated 2023-02-10 and 1.2.2 dated 2026-07-31
DESCRIPTION | 25 +++++++++--------- LICENSE | 2 - MD5 | 18 ++++++------- NAMESPACE | 25 +++++++++--------- R/IP2Proxy.r | 61 ++++++++++++++++++++++++---------------------- man/get_all.Rd | 46 +++++++++++++++++----------------- man/is_proxy.Rd | 46 +++++++++++++++++----------------- man/lookup_web_service.Rd | 54 ++++++++++++++++++++-------------------- man/open.Rd | 40 +++++++++++++++--------------- man/plot_map.Rd | 40 +++++++++++++++--------------- 10 files changed, 180 insertions(+), 177 deletions(-)
Title: Generate Alluvial Plots with a Single Line of Code
Description: Alluvial plots are similar to sankey diagrams and visualise categorical data
over multiple dimensions as flows. (Rosvall M, Bergstrom CT (2010) Mapping Change in
Large Networks. PLoS ONE 5(1): e8694. <doi:10.1371/journal.pone.0008694>
Their graphical grammar however is a bit more complex then that of a regular x/y
plots. The 'ggalluvial' package made a great job of translating that grammar into
'ggplot2' syntax and gives you many options to tweak the appearance of an alluvial
plot, however there still remains a multi-layered complexity that makes it difficult
to use 'ggalluvial' for explorative data analysis. 'easyalluvial' provides a simple
interface to this package that allows you to produce a decent alluvial plot from any
dataframe in either long or wide format from a single line of code while also handling
continuous data. It is meant to allow a quick visualisation of entire dataframes
with a focus on different colouring options that can make alluvial plots a great
tool for d [...truncated...]
Author: Bjoern Koneswarakantha [aut, cre]
Maintainer: Bjoern Koneswarakantha <datistics@gmail.com>
Diff between easyalluvial versions 0.4.0 dated 2025-09-03 and 0.4.1 dated 2026-07-31
DESCRIPTION | 13 +++++++------ MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/alluvial_long.R | 6 ++++++ R/alluvial_wide.R | 6 ++++++ man/alluvial_long.Rd | 5 +++++ man/alluvial_wide.Rd | 5 +++++ 7 files changed, 41 insertions(+), 12 deletions(-)
Title: Automatic Plotting and Theming of Many Graphs
Description: Visual exploration and presentation of networks should not be difficult.
This package includes functions for plotting networks and network-related metrics with sensible and pretty defaults.
It includes 'ggplot2'-based plot methods for many popular network package classes.
It also includes some novel layout algorithms, and options for straightforward, consistent themes.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between autograph versions 1.1.1 dated 2026-07-21 and 1.1.2 dated 2026-07-31
autograph-1.1.1/autograph/tests/testthat/degdist.png |only autograph-1.1.1/autograph/tests/testthat/gofi.png |only autograph-1.1.1/autograph/tests/testthat/test-plot_convergence.R |only autograph-1.1.1/autograph/tests/testthat/test-plot_gof.R |only autograph-1.1.1/autograph/tests/testthat/test-plot_manynet.R |only autograph-1.1.1/autograph/tests/testthat/test-plot_migraph.R |only autograph-1.1.1/autograph/tests/testthat/test-plot_rsiena.R |only autograph-1.1.1/autograph/tests/testthat/testdata |only autograph-1.1.2/autograph/DESCRIPTION | 16 - autograph-1.1.2/autograph/MD5 | 86 ++++----- autograph-1.1.2/autograph/NAMESPACE | 3 autograph-1.1.2/autograph/NEWS.md | 76 ++++++++ autograph-1.1.2/autograph/R/graph_aes.R | 61 +++--- autograph-1.1.2/autograph/R/graph_checks.R |only autograph-1.1.2/autograph/R/graph_edges.R | 19 -- autograph-1.1.2/autograph/R/graph_labels.R | 12 + autograph-1.1.2/autograph/R/graph_layout.R | 13 + autograph-1.1.2/autograph/R/graph_nodes.R | 7 autograph-1.1.2/autograph/R/graphr.R | 71 +++++-- autograph-1.1.2/autograph/R/graphs.R | 28 ++ autograph-1.1.2/autograph/R/grapht.R | 66 +++++-- autograph-1.1.2/autograph/R/layout_configurational.R | 7 autograph-1.1.2/autograph/R/layout_grid.R | 9 autograph-1.1.2/autograph/R/layout_partition.R | 46 +++- autograph-1.1.2/autograph/R/plot_analysis.R | 45 +++- autograph-1.1.2/autograph/R/plot_gof.R | 15 + autograph-1.1.2/autograph/R/plot_summaries.R | 8 autograph-1.1.2/autograph/R/theme_match.R | 8 autograph-1.1.2/autograph/R/theme_palettes.R | 20 ++ autograph-1.1.2/autograph/R/theme_set.R | 28 +- autograph-1.1.2/autograph/README.md | 29 +-- autograph-1.1.2/autograph/build/partial.rdb |binary autograph-1.1.2/autograph/inst/tutorials/autograph1/visualisation.Rmd | 94 +++++----- autograph-1.1.2/autograph/man/ag_call.Rd | 13 + autograph-1.1.2/autograph/man/layout_configuration.Rd | 8 autograph-1.1.2/autograph/man/map_member.Rd | 2 autograph-1.1.2/autograph/tests/testthat/Rplots.pdf |binary autograph-1.1.2/autograph/tests/testthat/helper-functional.R | 11 - autograph-1.1.2/autograph/tests/testthat/helper-tutorials.R | 40 +++- autograph-1.1.2/autograph/tests/testthat/test-functional_errors.R |only autograph-1.1.2/autograph/tests/testthat/test-functional_layouts.R | 79 +++++++- autograph-1.1.2/autograph/tests/testthat/test-functional_plots.R | 28 ++ autograph-1.1.2/autograph/tests/testthat/test-functional_themes.R | 67 ++++++- autograph-1.1.2/autograph/tests/testthat/test-graphr.R | 50 +++-- autograph-1.1.2/autograph/tests/testthat/test-grapht.R | 24 ++ autograph-1.1.2/autograph/tests/testthat/test-layout_partition.R | 1 autograph-1.1.2/autograph/tests/testthat/test-theme_match.R | 2 autograph-1.1.2/autograph/tests/testthat/test-theme_set.R | 4 autograph-1.1.2/autograph/tests/testthat/test-tutorials_autograph.R | 1 49 files changed, 800 insertions(+), 297 deletions(-)
Title: TeX-to-HTML/MathML Translators TtH/TtM
Description: C source code and R wrappers for the tth/ttm TeX-to-HTML/MathML translators.
Author: Ian H. Hutchinson [aut] ,
Friedrich Leisch [aut] ,
Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between tth versions 4.16-0 dated 2024-04-26 and 4.16-1 dated 2026-07-31
DESCRIPTION | 18 ++++++++++-------- MD5 | 6 +++--- NEWS.md | 8 ++++++++ R/bycodes.R | 2 +- 4 files changed, 22 insertions(+), 12 deletions(-)
Title: Read and Write Frictionless Data Packages
Description: Read and write Frictionless Data Packages. A 'Data Package'
(<https://specs.frictionlessdata.io/data-package/>) is a simple
container format and standard to describe and package a collection of
(tabular) data. It is typically used to publish FAIR
(<https://www.go-fair.org/fair-principles/>) and open datasets.
Author: Peter Desmet [aut, cre] ),
Damiano Oldoni [aut] ),
Pieter Huybrechts [aut] ),
Sanne Govaert [aut] ),
Kyle Husmann [ctb] ,
Research Institute for Nature and Forest [cph] ,
Research Foundation - Flanders [fnd] ,
Beatriz Milz [rev] ,
Joao Martins [rev] [...truncated...]
Maintainer: Peter Desmet <peter.desmet@inbo.be>
Diff between frictionless versions 1.2.1 dated 2025-05-23 and 1.3.0 dated 2026-07-31
frictionless-1.2.1/frictionless/R/get_resource.R |only frictionless-1.2.1/frictionless/R/get_schema.R |only frictionless-1.2.1/frictionless/R/print.R |only frictionless-1.2.1/frictionless/R/resources.R |only frictionless-1.2.1/frictionless/man/get_schema.Rd |only frictionless-1.2.1/frictionless/man/resources.Rd |only frictionless-1.2.1/frictionless/tests/testthat/test-print.R |only frictionless-1.2.1/frictionless/tests/testthat/test-resources.R |only frictionless-1.3.0/frictionless/DESCRIPTION | 18 frictionless-1.3.0/frictionless/MD5 | 154 ++-- frictionless-1.3.0/frictionless/NAMESPACE | 5 frictionless-1.3.0/frictionless/NEWS.md | 54 + frictionless-1.3.0/frictionless/R/add_resource.R | 56 - frictionless-1.3.0/frictionless/R/check_data.R | 2 frictionless-1.3.0/frictionless/R/check_package.R | 35 - frictionless-1.3.0/frictionless/R/check_path.R | 2 frictionless-1.3.0/frictionless/R/check_schema.R | 2 frictionless-1.3.0/frictionless/R/col_types.R | 14 frictionless-1.3.0/frictionless/R/collectors.R | 12 frictionless-1.3.0/frictionless/R/create_package.R | 16 frictionless-1.3.0/frictionless/R/create_schema.R | 4 frictionless-1.3.0/frictionless/R/deprecated.R |only frictionless-1.3.0/frictionless/R/example_package.R | 2 frictionless-1.3.0/frictionless/R/locale.R | 6 frictionless-1.3.0/frictionless/R/print.datapackage.R |only frictionless-1.3.0/frictionless/R/read_from_path.R | 57 - 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Title: S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)
Description: An S3 class with methods for working with regular and irregular time series.
The class stores data as numeric vectors/matrices (or factors) along with a time index of arbitrary class
(including numeric, Date, POSIXct, chron, yearmon, yearqtr, etc.). Functions and methods
are consistent with the ts class and base R and also extend standard generics. Tools include:
Data import/export, coercion, visualization (with base R, 'ggplot2', 'lattice', 'tinyplot'), alignment and merging,
aggregation, lags and subsets, rolling analytics, and time-based interpolation/filling.
The design is introduced in Zeileis and Grothendieck (2005) <doi:10.18637/jss.v014.i06>.
Author: Achim Zeileis [aut, cre] ,
Gabor Grothendieck [aut],
Jeffrey A. Ryan [aut],
Joshua M. Ulrich [ctb],
Felix Andrews [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between zoo versions 1.8-15 dated 2025-12-15 and 1.9-0 dated 2026-07-31
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-19 1.5.5
2024-11-20 1.5.4
2024-10-10 1.5.3
2024-06-28 1.5.2
2024-02-09 1.5.1
2023-01-15 1.5.0
2020-01-16 1.4.1-1
2019-07-02 1.4.1
2019-06-12 1.4.0
2019-05-07 1.3.0
2018-09-15 1.2.0
2018-02-27 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-14 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-26 0.9.72
2026-07-19 0.9.7
2026-06-21 0.9.6
2026-05-18 0.9.5
2026-05-04 0.9.3