Title: Multivariate Meta-Analysis of Dynamic Model Estimates
Description: Fits fixed-, random-, or mixed-effects multivariate meta-analysis models
using dynamic model estimates from each individual
building on and extending Lee and Gates (2023) <doi:10.1080/00273171.2023.2229310>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between metaDyn versions 1.0.1 dated 2026-03-24 and 1.0.3 dated 2026-08-01
metaDyn-1.0.1/metaDyn/R/metaDyn-average-within-multivariate-dot.R |only metaDyn-1.0.1/metaDyn/R/metaDyn-meta-v-hat-multivariate-dot.R |only metaDyn-1.0.3/metaDyn/DESCRIPTION | 8 metaDyn-1.0.3/metaDyn/MD5 | 109 +-- metaDyn-1.0.3/metaDyn/NAMESPACE | 6 metaDyn-1.0.3/metaDyn/NEWS.md | 10 metaDyn-1.0.3/metaDyn/R/metaDyn-ci-mc-meta-dot.R |only metaDyn-1.0.3/metaDyn/R/metaDyn-ci-wald-meta-dot.R | 56 + metaDyn-1.0.3/metaDyn/R/metaDyn-drop-id-dot.R |only metaDyn-1.0.3/metaDyn/R/metaDyn-meta-alpha-dot.R | 3 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-check-free.R | 45 + metaDyn-1.0.3/metaDyn/R/metaDyn-meta-expected-covariances-cond-y-dot.R |only metaDyn-1.0.3/metaDyn/R/metaDyn-meta-expected-covariances-cond-z-dot.R |only metaDyn-1.0.3/metaDyn/R/metaDyn-meta-expected-covariances-dot.R | 97 -- metaDyn-1.0.3/metaDyn/R/metaDyn-meta-expected-covariances-joint-x-y-dot.R |only metaDyn-1.0.3/metaDyn/R/metaDyn-meta-expected-covariances-joint-x-z-dot.R |only metaDyn-1.0.3/metaDyn/R/metaDyn-meta-expected-means-dot.R | 171 +++- metaDyn-1.0.3/metaDyn/R/metaDyn-meta-extract-dot.R | 23 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-fit-dot.R | 28 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-gamma-dot.R | 3 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-i-sqr-dot.R | 41 - metaDyn-1.0.3/metaDyn/R/metaDyn-meta-indirect-dot.R | 26 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-kappa-dot.R | 3 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-model-dot.R | 52 + metaDyn-1.0.3/metaDyn/R/metaDyn-meta-mu-x-dot.R |only metaDyn-1.0.3/metaDyn/R/metaDyn-meta-mx-matrices-parameters-dot.R | 73 +- metaDyn-1.0.3/metaDyn/R/metaDyn-meta-mx-matrices-variables-dot.R | 42 - metaDyn-1.0.3/metaDyn/R/metaDyn-meta-omega-dot.R | 3 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-phi-dot.R | 3 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-psi-diag-dot.R | 3 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-psi-dot.R | 9 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-psi-sym-dot.R | 3 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-sigma-x-dot.R |only metaDyn-1.0.3/metaDyn/R/metaDyn-meta-starts-dot.R | 355 +++++----- metaDyn-1.0.3/metaDyn/R/metaDyn-meta-tau-sqr-diag-dot.R | 3 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-tau-sqr-dot.R | 9 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-tau-sqr-sym-dot.R | 3 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-v-hat-dot.R | 22 metaDyn-1.0.3/metaDyn/R/metaDyn-meta-var-mx.R | 36 - metaDyn-1.0.3/metaDyn/R/metaDyn-meta.R | 107 ++- metaDyn-1.0.3/metaDyn/R/metaDyn-methods-metadynmeta.R | 124 ++- metaDyn-1.0.3/metaDyn/build/partial.rdb |binary metaDyn-1.0.3/metaDyn/man/Meta.Rd | 70 + metaDyn-1.0.3/metaDyn/man/MetaVARMx.Rd | 73 +- metaDyn-1.0.3/metaDyn/man/confint.metadynmeta.Rd | 23 metaDyn-1.0.3/metaDyn/man/print.metadynmeta.Rd | 19 metaDyn-1.0.3/metaDyn/man/summary.metadynmeta.Rd | 23 metaDyn-1.0.3/metaDyn/tests/testthat.R | 5 metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-distal-mixed-effects-null-cov-diag.R | 39 - metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-distal-mixed-effects-null-error.R | 96 ++ metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-distal-mixed-effects-null.R | 39 - metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-distal-mixed-effects-stochastic-x.R |only metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-distal-mixed-effects-values.R | 39 - metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-distal-random-effects-null.R | 37 - metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-distal-random-effects-values.R | 37 - metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-fixed-effect-null.R | 140 ++- metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-fixed-effect-values.R | 159 ++-- metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-mixed-effects-null.R | 175 ++-- metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-mixed-effects-values.R | 227 +++--- metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-random-effects-null.R | 185 ++--- metaDyn-1.0.3/metaDyn/tests/testthat/test-metaDyn-random-effects-values.R | 231 +++--- 61 files changed, 1991 insertions(+), 1102 deletions(-)
Title: Classification with Parallel Factor Analysis
Description: Classification using Richard A. Harshman's Parallel Factor
Analysis-1 (Parafac) model or Parallel Factor Analysis-2 (Parafac2) model fit to
a three-way or four-way data array. See Harshman and Lundy (1994):
<doi:10.1016/0167-9473(94)90132-5>. Classification using principal component
analysis (PCA) fit to a two-way data matrix is also supported. Uses component
weights from one mode of a Parafac, Parafac2, or PCA model as features to tune
parameters for one or more classification methods via a k-fold cross-validation
procedure. Allows for constraints on different tensor modes. Allows for
inclusion of additional features alongside features generated by the component
model. Supports penalized logistic regression, support vector machine, random
forest, feed-forward neural network, regularized discriminant analysis, and
gradient boosting machine. Supports binary and multiclass classification.
Predicts class labels or class probabilities and calculates multiple
classification performanc [...truncated...]
Author: Matthew A. Asisgress [aut, cre]
Maintainer: Matthew A. Asisgress <mattgress@protonmail.ch>
Diff between cpfa versions 1.3.1 dated 2026-07-13 and 1.3.2 dated 2026-08-01
ChangeLog | 20 ++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/cpfa.R | 18 +++++++++++++++--- R/kcv.nn.R | 11 +++++++---- R/kcv.plr.R | 4 ++-- R/simcpfa.R | 5 ++++- R/tunecpfa.R | 39 ++++++++++++++++++++++++++++++++++----- inst/doc/cpfa.pdf |binary man/cpfa.Rd | 23 +++++++++++++++-------- man/tunecpfa.Rd | 4 ++-- 11 files changed, 113 insertions(+), 39 deletions(-)
Title: General Modules for 'teal' Applications
Description: Prebuilt 'shiny' modules containing tools for viewing data,
visualizing data, understanding missing and outlier values within your
data and performing simple data analysis. This extends 'teal'
framework that supports reproducible research and analysis.
Author: Dony Unardi [aut, cre],
Dawid Kaledkowski [aut],
Pawel Rucki [aut],
Mahmoud Hallal [aut],
Ondrej Slama [ctb],
Maciej Nasinski [aut],
Konrad Pagacz [aut],
Nikolas Burkoff [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Dony Unardi <unardid@gene.com>
Diff between teal.modules.general versions 0.7.0 dated 2026-07-01 and 0.8.0 dated 2026-08-01
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More information about teal.modules.general at CRAN
Permanent link
Title: Clinical Table Styling Tools and Utilities
Description: The primary motivation of this package is to take the things that are great about the R packages 'flextable' <https://davidgohel.github.io/flextable/> and 'officer' <https://davidgohel.github.io/officer/>, take the standard and complex pieces of formatting clinical tables for regulatory use, and simplify the tedious pieces.
Author: Mike Stackhouse [aut, cre] ,
Ross Didenko [aut],
Yevhenii Boiko [aut],
Marat Zakirov [ctb],
Roman Rogoza [ctb],
Atorus Research, Inc. [cph],
Incyte Corporation [cph]
Maintainer: Mike Stackhouse <mike.stackhouse@atorusresearch.com>
Diff between clinify versions 0.3.1 dated 2026-06-02 and 0.4.0 dated 2026-08-01
DESCRIPTION | 6 MD5 | 86 +++-- NAMESPACE | 4 R/add_titles_footnotes.R | 372 ++++++++++++++++++++++- R/clindoc.R | 15 R/clintable.R | 157 +++++++++ R/col_width.R | 45 ++ R/column_headers.R | 361 ++++++++++++++++++++-- R/header_pad.R |only R/pagination.R | 4 R/print.R | 27 + R/row_height.R |only R/slice_clintable.R | 130 +++----- R/spanner_rule.R |only R/styles.R | 39 +- R/write.R | 6 inst/defaults_template.R | 33 +- inst/doc/clinify.R | 28 + inst/doc/clinify.Rmd | 50 +++ inst/doc/clinify.html | 251 ++++++++++----- inst/doc/defaults.R | 24 - inst/doc/defaults.Rmd | 24 - inst/doc/defaults.html | 24 - inst/doc/end_to_end.html | 2 inst/doc/pagination.html | 26 - inst/doc/titles_footnotes.R | 18 + inst/doc/titles_footnotes.Rmd | 29 + inst/doc/titles_footnotes.html | 113 +++++-- man/add_titles_footnotes.Rd | 71 ++++ man/as_clintable.Rd | 15 man/clin_column_headers.Rd | 59 +++ man/clin_header_pad.Rd |only man/clin_row_height.Rd |only man/clin_spanner_rule.Rd |only man/clin_table_align.Rd |only man/clintable.Rd | 74 ++++ man/new_title_footnote.Rd | 10 tests/testthat/test-add_titles_footnotes.R | 261 ++++++++++++++++ tests/testthat/test-clintable.R | 341 +++++++++++++++++++++ tests/testthat/test-col_width.R | 39 ++ tests/testthat/test-column_headers.R | 459 +++++++++++++++++++++++++++++ tests/testthat/test-header_pad.R |only tests/testthat/test-row_height.R |only tests/testthat/test-slice_clintable.R | 359 ++++++++++++++++++++-- tests/testthat/test-spanner_rule.R |only tests/testthat/test-styles.R | 64 ++++ vignettes/clinify.Rmd | 50 +++ vignettes/defaults.Rmd | 24 - vignettes/titles_footnotes.Rmd | 29 + 49 files changed, 3281 insertions(+), 448 deletions(-)
Title: Grammar of Graphics for Linear Model Diagnostic Plots
Description: Allows for easy creation of diagnostic plots for a variety of model objects using the Grammar of Graphics.
Provides functionality for both individual diagnostic plots and an array of four standard diagnostic plots.
Author: Grayson White [aut, cre]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between gglm versions 1.0.5 dated 2026-02-21 and 1.1.0 dated 2026-08-01
gglm-1.0.5/gglm/man/figures/unnamed-chunk-3-1.png |only gglm-1.1.0/gglm/DESCRIPTION | 11 ++-- gglm-1.1.0/gglm/MD5 | 59 +++++++++++----------- gglm-1.1.0/gglm/NAMESPACE | 1 gglm-1.1.0/gglm/R/aaa.R | 17 ++++++ gglm-1.1.0/gglm/R/gglm.R | 54 +++++++++++++------- gglm-1.1.0/gglm/R/launch.R |only gglm-1.1.0/gglm/R/launch_css.R |only gglm-1.1.0/gglm/R/list_model_classes.R | 13 ++-- gglm-1.1.0/gglm/R/stat_cooks_leverage.R | 30 +++++++---- gglm-1.1.0/gglm/R/stat_cooks_obs.R | 20 +++++-- gglm-1.1.0/gglm/R/stat_fitted_resid.R | 22 +++++--- gglm-1.1.0/gglm/R/stat_normal_qq.R | 22 ++++++-- gglm-1.1.0/gglm/R/stat_resid_hist.R | 20 +++++-- gglm-1.1.0/gglm/R/stat_resid_leverage.R | 28 +++++++--- gglm-1.1.0/gglm/R/stat_scale_location.R | 30 +++++++---- gglm-1.1.0/gglm/R/utils.R | 29 ++++++++++ gglm-1.1.0/gglm/README.md | 18 ++++-- gglm-1.1.0/gglm/inst |only gglm-1.1.0/gglm/man/figures/unnamed-chunk-4-1.png |binary gglm-1.1.0/gglm/man/figures/unnamed-chunk-5-1.png |binary gglm-1.1.0/gglm/man/figures/unnamed-chunk-5-2.png |only gglm-1.1.0/gglm/man/figures/unnamed-chunk-6-1.png |binary gglm-1.1.0/gglm/man/figures/unnamed-chunk-7-1.png |only gglm-1.1.0/gglm/man/gglm.Rd | 16 +++-- gglm-1.1.0/gglm/man/launch.Rd |only gglm-1.1.0/gglm/man/list_model_classes.Rd | 12 ++-- gglm-1.1.0/gglm/man/stat_cooks_leverage.Rd | 14 +++-- gglm-1.1.0/gglm/man/stat_cooks_obs.Rd | 13 +++- gglm-1.1.0/gglm/man/stat_fitted_resid.Rd | 13 +++- gglm-1.1.0/gglm/man/stat_normal_qq.Rd | 11 ++-- gglm-1.1.0/gglm/man/stat_resid_hist.Rd | 11 ++-- gglm-1.1.0/gglm/man/stat_resid_leverage.Rd | 14 +++-- gglm-1.1.0/gglm/man/stat_scale_location.Rd | 14 +++-- 34 files changed, 340 insertions(+), 152 deletions(-)
Title: Rapid Gene Characterization Using Public Genomic Databases
Description: A user-friendly interface for characterizing gene function by
disease type and tissue site, integrating curated data from publicly
available genomic and proteomic databases to support candidate gene
prioritization in experimental workflows.
Author: Cydnie Martin [aut, cre]
Maintainer: Cydnie Martin <martincydenise@gmail.com>
Diff between genefindr versions 1.0.0 dated 2026-06-08 and 1.1.0 dated 2026-08-01
DESCRIPTION | 12 ++- MD5 | 17 +++-- NAMESPACE | 6 + R/findr.R | 156 ++++------------------------------------------ R/integrations.R |only R/plots.R |only README.md | 2 man/findr_from_deseq.Rd |only man/findr_plot_genes.Rd |only man/findr_plot_heatmap.Rd |only man/findr_plot_sites.Rd |only man/findr_sites_table.Rd |only tests/testthat |only tests/testthat.R |only 14 files changed, 42 insertions(+), 151 deletions(-)
Title: Time Series Forecasting Functions
Description: Fundamental time series forecasting models such as autoregressive integrated moving average (ARIMA), exponential smoothing, and simple moving average are included. For ARIMA models, the output follows the traditional parameterisation by Box and Jenkins (1970, ISBN: 0816210942, 9780816210947). Furthermore, there are functions for detailed time series exploration and decomposition, respectively. All data and result visualisations are generated by 'ggplot2' instead of conventional R graphical output. For more details regarding the theoretical background of the models see Hyndman, R.J. and Athanasopoulos, G. (2021) <https://otexts.com/fpp3/>.
Author: Ka Yui Karl Wu [aut, cre]
Maintainer: Ka Yui Karl Wu <karlwuky@suss.edu.sg>
Diff between tsforecast versions 1.3.0 dated 2026-01-21 and 1.3.1 dated 2026-08-01
tsforecast-1.3.0/tsforecast/R/tsforecast_1.3.0.R |only tsforecast-1.3.1/tsforecast/DESCRIPTION | 10 ++-- tsforecast-1.3.1/tsforecast/MD5 | 50 +++++++++++------------ tsforecast-1.3.1/tsforecast/R/tsforecast_1.3.1.R |only tsforecast-1.3.1/tsforecast/build/partial.rdb |binary tsforecast-1.3.1/tsforecast/man/airport.Rd | 2 tsforecast-1.3.1/tsforecast/man/is.outlier.Rd | 2 tsforecast-1.3.1/tsforecast/man/predict.Rd | 2 tsforecast-1.3.1/tsforecast/man/ts-functions.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsacf.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsarima.Rd | 6 +- tsforecast-1.3.1/tsforecast/man/tsboxplot.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsconvert.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsdecomp.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsdiff.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsesm.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsexplore.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsforecast.Rd | 2 tsforecast-1.3.1/tsforecast/man/tshistogram.Rd | 2 tsforecast-1.3.1/tsforecast/man/tslag.Rd | 2 tsforecast-1.3.1/tsforecast/man/tslineplot.Rd | 2 tsforecast-1.3.1/tsforecast/man/tslm.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsmltest.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsmodeleval.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsmovav.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsqqplot.Rd | 2 tsforecast-1.3.1/tsforecast/man/tsscatterplot.Rd | 2 27 files changed, 54 insertions(+), 54 deletions(-)
Title: Estimating Propensity Scores (PS), PS-Based Weights, and Effects
Description: Toolbox that provides a streamlined, end-to-end workflow for propensity
score analysis in generating real-world evidence from real-world data.
The package covers the full analytic pipeline - from estimating propensity scores
via logistic regression, to calculating weights or creating a matched cohort,
to generating publication-ready Table 1s with standardized mean
differences and weighted balance diagnostics. It also estimates incidence rates,
hazard ratios, risk ratios, and risk differences with support for stratified and
direct-standardized analyses. All core functions produce formatted 'Excel' reports
with embedded 'README' documentation, making results immediately shareable with
collaborators and stakeholders. Methods are based on Rosenbaum and Rubin (1983)
<doi:10.1093/biomet/70.1.41>, Austin (2011) <doi:10.1080/00273171.2011.568786>,
and Desai et al. (2017) <doi:10.1097/EDE.0000000000000595>.
Author: Hanseul Cho [aut, cre],
Georg Hahn [aut],
Janinne Ortega-Montiel [aut],
Julie Paik [aut],
Elisabetta Patorno [aut]
Maintainer: Hanseul Cho <hanseul0618@gmail.com>
Diff between rwetools versions 0.2.0 dated 2026-06-21 and 0.4.0 dated 2026-08-01
rwetools-0.2.0/rwetools/man/create_ps_weights.Rd |only rwetools-0.4.0/rwetools/DESCRIPTION | 7 rwetools-0.4.0/rwetools/MD5 | 60 rwetools-0.4.0/rwetools/NAMESPACE | 20 rwetools-0.4.0/rwetools/NEWS.md | 136 rwetools-0.4.0/rwetools/R/build_table1.R | 3 rwetools-0.4.0/rwetools/R/create_psweights.R | 621 ++- rwetools-0.4.0/rwetools/R/effect_measures.R | 1983 ++++------ rwetools-0.4.0/rwetools/R/estimate_ps.R | 184 rwetools-0.4.0/rwetools/R/helpers_effect_engines.R |only rwetools-0.4.0/rwetools/R/helpers_effect_measures.R | 570 ++ rwetools-0.4.0/rwetools/R/helpers_ps_psweights.R | 169 rwetools-0.4.0/rwetools/man/build_table1.Rd | 319 - rwetools-0.4.0/rwetools/man/check_ps_assumptions_internal.Rd | 54 rwetools-0.4.0/rwetools/man/create_iptw.Rd |only rwetools-0.4.0/rwetools/man/create_love_plot.Rd | 116 rwetools-0.4.0/rwetools/man/create_matching_weights.Rd |only rwetools-0.4.0/rwetools/man/create_overlap_weights.Rd |only rwetools-0.4.0/rwetools/man/create_ps_matched_cohort.Rd | 291 - rwetools-0.4.0/rwetools/man/dot-is_balanced.Rd |only rwetools-0.4.0/rwetools/man/dot-plot_ps_distribution_set.Rd | 149 rwetools-0.4.0/rwetools/man/dot-trim_ps.Rd |only rwetools-0.4.0/rwetools/man/dot-truncate_ps_weights.Rd |only rwetools-0.4.0/rwetools/man/estimate_hr_ir.Rd | 383 - rwetools-0.4.0/rwetools/man/estimate_ps.Rd | 225 - rwetools-0.4.0/rwetools/man/estimate_rr_rd.Rd | 421 -- rwetools-0.4.0/rwetools/tests/testthat/fixtures |only rwetools-0.4.0/rwetools/tests/testthat/test-build_table1.R | 3 rwetools-0.4.0/rwetools/tests/testthat/test-create_ps_matched_cohort.R | 29 rwetools-0.4.0/rwetools/tests/testthat/test-create_psweights.R | 121 rwetools-0.4.0/rwetools/tests/testthat/test-estimate_hr_ir.R | 334 + rwetools-0.4.0/rwetools/tests/testthat/test-estimate_ps.R | 125 rwetools-0.4.0/rwetools/tests/testthat/test-estimate_rr_rd.R | 238 - rwetools-0.4.0/rwetools/tests/testthat/test-finegray.R |only rwetools-0.4.0/rwetools/tests/testthat/test-helpers-engines.R |only rwetools-0.4.0/rwetools/tests/testthat/test-irr.R |only rwetools-0.4.0/rwetools/tests/testthat/test-ps_weight_features.R |only 37 files changed, 4037 insertions(+), 2524 deletions(-)
Title: Identify Relevant Clinical Codes and Evaluate Their Use
Description: Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.
Author: Edward Burn [aut, cre] ,
Marta Alcalde-Herraiz [aut] ,
Marti Catala [aut] ,
Xihang Chen [aut] ,
Nuria Mercade-Besora [aut] ,
Mike Du [aut] ,
Danielle Newby [aut]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between CodelistGenerator versions 4.0.2 dated 2026-01-19 and 4.1.0 dated 2026-08-01
CodelistGenerator-4.0.2/CodelistGenerator/R/searchStrategy.R |only CodelistGenerator-4.1.0/CodelistGenerator/DESCRIPTION | 26 CodelistGenerator-4.1.0/CodelistGenerator/MD5 | 258 +-- CodelistGenerator-4.1.0/CodelistGenerator/NAMESPACE | 8 CodelistGenerator-4.1.0/CodelistGenerator/NEWS.md | 3 CodelistGenerator-4.1.0/CodelistGenerator/R/CodelistGenerator-package.R | 1 CodelistGenerator-4.1.0/CodelistGenerator/R/asCodelist.R | 2 CodelistGenerator-4.1.0/CodelistGenerator/R/asCodelistWithDetails.R | 2 CodelistGenerator-4.1.0/CodelistGenerator/R/asConceptSetExpression.R | 9 CodelistGenerator-4.1.0/CodelistGenerator/R/availableConceptClassIds.R | 9 CodelistGenerator-4.1.0/CodelistGenerator/R/availableRelationshipIds.R | 41 CodelistGenerator-4.1.0/CodelistGenerator/R/availableRouteCategories.R | 6 CodelistGenerator-4.1.0/CodelistGenerator/R/availableVocabularies.R | 14 CodelistGenerator-4.1.0/CodelistGenerator/R/benchmarkCodelistGenerator.R | 10 CodelistGenerator-4.1.0/CodelistGenerator/R/checks.R | 78 - CodelistGenerator-4.1.0/CodelistGenerator/R/classCodeSearch.R |only CodelistGenerator-4.1.0/CodelistGenerator/R/codesFromConceptSet.R | 8 CodelistGenerator-4.1.0/CodelistGenerator/R/compareCodelists.R | 10 CodelistGenerator-4.1.0/CodelistGenerator/R/documentation_helper.R | 25 CodelistGenerator-4.1.0/CodelistGenerator/R/getATCCodes.R | 112 - CodelistGenerator-4.1.0/CodelistGenerator/R/getCandidateCodes.R | 55 CodelistGenerator-4.1.0/CodelistGenerator/R/getDrugIngredientCodes.R | 118 + CodelistGenerator-4.1.0/CodelistGenerator/R/runSearch.R | 25 CodelistGenerator-4.1.0/CodelistGenerator/R/stratify.R | 44 CodelistGenerator-4.1.0/CodelistGenerator/R/stratifyByBrand.R | 5 CodelistGenerator-4.1.0/CodelistGenerator/R/stratifyByConcept.R | 5 CodelistGenerator-4.1.0/CodelistGenerator/R/stratifyByDomain.R | 5 CodelistGenerator-4.1.0/CodelistGenerator/R/stratifyByDoseForm.R | 80 + CodelistGenerator-4.1.0/CodelistGenerator/R/stratifyByDoseUnit.R | 5 CodelistGenerator-4.1.0/CodelistGenerator/R/stratifyByRouteCategory.R | 40 CodelistGenerator-4.1.0/CodelistGenerator/R/stratifyByVocabulary.R | 5 CodelistGenerator-4.1.0/CodelistGenerator/R/subset.R | 67 CodelistGenerator-4.1.0/CodelistGenerator/R/subsetOnDomain.R | 7 CodelistGenerator-4.1.0/CodelistGenerator/R/subsetOnDoseUnit.R | 7 CodelistGenerator-4.1.0/CodelistGenerator/R/subsetOnIngredientRange.R | 67 CodelistGenerator-4.1.0/CodelistGenerator/R/subsetOnRouteCategory.R | 7 CodelistGenerator-4.1.0/CodelistGenerator/R/summariseAchillesCodeUse.R | 11 CodelistGenerator-4.1.0/CodelistGenerator/R/summariseCodeUse.R | 167 -- CodelistGenerator-4.1.0/CodelistGenerator/R/summariseCohortCodeUse.R |only CodelistGenerator-4.1.0/CodelistGenerator/R/summariseOrphanCodes.R | 2 CodelistGenerator-4.1.0/CodelistGenerator/R/sysdata.rda |binary CodelistGenerator-4.1.0/CodelistGenerator/R/tableAchillesCodeUse.R | 20 CodelistGenerator-4.1.0/CodelistGenerator/R/tableCodeUse.R | 107 - CodelistGenerator-4.1.0/CodelistGenerator/R/tableCohortCodeUse.R |only CodelistGenerator-4.1.0/CodelistGenerator/R/tableOrphanCodes.R | 20 CodelistGenerator-4.1.0/CodelistGenerator/R/unionCodelists.R | 28 CodelistGenerator-4.1.0/CodelistGenerator/R/vocabUtilities.R | 9 CodelistGenerator-4.1.0/CodelistGenerator/build/vignette.rds |binary CodelistGenerator-4.1.0/CodelistGenerator/inst/Instructions.xlsx |only CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a01_GettingOmopCdmVocabularies.Rmd | 2 CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a01_GettingOmopCdmVocabularies.html | 13 CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a02_ExploreCDMvocabulary.html | 5 CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a03_TypesOfCodelist.Rmd | 6 CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a03_TypesOfCodelist.html | 11 CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a04_GenerateCandidateCodelist.Rmd | 4 CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a04_GenerateCandidateCodelist.html | 676 +++++++--- CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a05_GenerateVocabularyBasedCodelist.html | 5 CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a06_ImportExport.html | 5 CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a08_ManipulateCodelists.html | 5 CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a09_RunCodelistDiagnostics.html | 5 CodelistGenerator-4.1.0/CodelistGenerator/inst/doc/a10_CodelistGeneratorBenchmark.html | 124 - CodelistGenerator-4.1.0/CodelistGenerator/man/CodelistGenerator-package.Rd | 1 CodelistGenerator-4.1.0/CodelistGenerator/man/addConcepts.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/asCodelist.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/asCodelistWithDetails.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/asConceptSetExpression.Rd | 10 CodelistGenerator-4.1.0/CodelistGenerator/man/associatedConceptClassIds.Rd | 12 CodelistGenerator-4.1.0/CodelistGenerator/man/associatedDomains.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/associatedDoseForms.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/associatedDoseUnits.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/associatedDrugIngredients.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/associatedRelationshipIds.Rd | 45 CodelistGenerator-4.1.0/CodelistGenerator/man/associatedRouteCategories.Rd | 8 CodelistGenerator-4.1.0/CodelistGenerator/man/associatedVocabularies.Rd | 7 CodelistGenerator-4.1.0/CodelistGenerator/man/availableConceptClassIds.Rd | 5 CodelistGenerator-4.1.0/CodelistGenerator/man/availableVocabularies.Rd | 5 CodelistGenerator-4.1.0/CodelistGenerator/man/compareCodelists.Rd | 10 CodelistGenerator-4.1.0/CodelistGenerator/man/domainDoc.Rd | 5 CodelistGenerator-4.1.0/CodelistGenerator/man/doseFormDoc.Rd | 3 CodelistGenerator-4.1.0/CodelistGenerator/man/doseUnitDoc.Rd | 3 CodelistGenerator-4.1.0/CodelistGenerator/man/emptyCodeSearch.Rd |only CodelistGenerator-4.1.0/CodelistGenerator/man/excludeConcepts.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/exportCodeSearch.Rd |only CodelistGenerator-4.1.0/CodelistGenerator/man/figures/lifecycle-deprecated.svg |only CodelistGenerator-4.1.0/CodelistGenerator/man/figures/lifecycle-experimental.svg |only CodelistGenerator-4.1.0/CodelistGenerator/man/figures/lifecycle-stable.svg |only CodelistGenerator-4.1.0/CodelistGenerator/man/figures/lifecycle-superseded.svg |only CodelistGenerator-4.1.0/CodelistGenerator/man/getATCCodes.Rd | 10 CodelistGenerator-4.1.0/CodelistGenerator/man/getCandidateCodes.Rd | 12 CodelistGenerator-4.1.0/CodelistGenerator/man/getDrugIngredientCodes.Rd | 10 CodelistGenerator-4.1.0/CodelistGenerator/man/importCodeSearch.Rd |only CodelistGenerator-4.1.0/CodelistGenerator/man/intersectCodelists.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/newCodeSearch.Rd |only CodelistGenerator-4.1.0/CodelistGenerator/man/routeCategoryDoc.Rd | 4 CodelistGenerator-4.1.0/CodelistGenerator/man/searchStrategy.Rd | 38 CodelistGenerator-4.1.0/CodelistGenerator/man/stratifyByBrand.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/stratifyByConcept.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/stratifyByDomain.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/stratifyByDoseForm.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/stratifyByDoseUnit.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/stratifyByRouteCategory.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/stratifyByVocabulary.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/subsetOnDomain.Rd | 7 CodelistGenerator-4.1.0/CodelistGenerator/man/subsetOnDoseForm.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/subsetOnDoseUnit.Rd | 5 CodelistGenerator-4.1.0/CodelistGenerator/man/subsetOnIngredientRange.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/subsetOnRouteCategory.Rd | 6 CodelistGenerator-4.1.0/CodelistGenerator/man/subsetOnVocabulary.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/subsetToCodesInUse.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/summariseAchillesCodeUse.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/summariseCodeUse.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/summariseCohortCodeUse.Rd | 13 CodelistGenerator-4.1.0/CodelistGenerator/man/summariseOrphanCodes.Rd | 9 CodelistGenerator-4.1.0/CodelistGenerator/man/tableAchillesCodeUse.Rd | 10 CodelistGenerator-4.1.0/CodelistGenerator/man/tableCodeUse.Rd | 9 CodelistGenerator-4.1.0/CodelistGenerator/man/tableCohortCodeUse.Rd | 10 CodelistGenerator-4.1.0/CodelistGenerator/man/tableOrphanCodes.Rd | 8 CodelistGenerator-4.1.0/CodelistGenerator/man/tableStyleDoc.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/typeTableDoc.Rd | 4 CodelistGenerator-4.1.0/CodelistGenerator/man/unionCodelists.Rd | 15 CodelistGenerator-4.1.0/CodelistGenerator/man/xDoc.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/man/xDocCohort.Rd | 2 CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-asCodelistWithDetails.R | 2 CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-classCodeSearch.R |only CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-compareCodelists.R | 20 CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-dbms.R | 176 +- CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-drugCodes.R | 8 CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-getCandidateCodes.R | 32 CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-summariseAchillesCodeUse.R | 2 CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-summariseCodeUse.R | 85 - CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-tableAchillesCodeUse.R | 11 CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-tableCodeUse.R | 10 CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-tableOrphanCodes.R | 11 CodelistGenerator-4.1.0/CodelistGenerator/tests/testthat/test-unionCodelists.R | 20 CodelistGenerator-4.1.0/CodelistGenerator/vignettes/a01_GettingOmopCdmVocabularies.Rmd | 2 CodelistGenerator-4.1.0/CodelistGenerator/vignettes/a03_TypesOfCodelist.Rmd | 6 CodelistGenerator-4.1.0/CodelistGenerator/vignettes/a04_GenerateCandidateCodelist.Rmd | 4 137 files changed, 1870 insertions(+), 1242 deletions(-)
More information about CodelistGenerator at CRAN
Permanent link
Title: Event Prediction
Description: Predicts enrollment and events at the design or analysis stage
using specified enrollment and time-to-event models through
simulations.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between eventPred versions 0.3.0 dated 2026-06-05 and 0.3.1 dated 2026-08-01
DESCRIPTION | 13 MD5 | 16 NEWS.md | 698 ++++++++++++++-------------- R/fitDropout.R | 1218 ++++++++++++++++++++++++-------------------------- R/fitEvent.R | 3 R/getPrediction.R | 3 R/predictEnrollment.R | 8 R/predictEvent.R | 97 --- inst/shinyApp/app.R | 74 --- 9 files changed, 1034 insertions(+), 1096 deletions(-)
Title: R Interface to the 'OKX' REST API
Description: Provides lightweight R wrappers for the 'OKX' REST API, covering
endpoints for market data, trading, account management, asset balances,
and copy trading. The upstream API reference is available at
<https://www.okx.com/docs-v5/en/>.
Author: Oliver Zhou [aut, cre],
Lily Li [aut]
Maintainer: Oliver Zhou <oliver.yxzhou@gmail.com>
Diff between okxr versions 0.4.7 dated 2026-07-12 and 0.4.8 dated 2026-08-01
DESCRIPTION | 6 +- MD5 | 28 +++++------ NAMESPACE | 2 NEWS.md | 10 +++ R/def_constants.R | 39 ++++++++++++--- R/wrappers_get_account.R | 49 +++++++++++++++++++ R/wrappers_post_trade.R | 73 ++++++++++++++++++++++------- README.md | 4 + man/get_user_glp_historical_performance.Rd |only man/get_user_glp_today_performance.Rd |only man/post_trade_amend_order.Rd | 6 +- man/post_trade_order.Rd | 7 +- man/post_trade_order_algo.Rd | 4 + man/post_trade_order_precheck.Rd | 6 +- tests/testthat/test-parser.R | 5 + tests/testthat/test-wrapper-queries.R | 54 +++++++++++++++++++-- 16 files changed, 239 insertions(+), 54 deletions(-)
Title: Utility Functions for Plotting
Description: Provides utility functions for plotting. Includes functions for color manipulation, plot customization, panel size control, data optimization for plots, and layout adjustments.
Author: Meng Xu [aut, cre] ,
Haoliang Zhu [aut]
Maintainer: Meng Xu <mengxu98@qq.com>
Diff between thisplot versions 0.4.0 dated 2026-05-24 and 0.4.3 dated 2026-08-01
DESCRIPTION | 21 MD5 | 28 - NAMESPACE | 7 NEWS.md | 20 R/DimDataPlot.R | 6 R/StatPlot.R | 774 ++++++++++++++++++++++++++++------ R/heatmap.R | 18 R/heatmap_border.R |only R/major_grid.R |only R/themes.R | 21 README.md | 1 man/DimDataPlot.Rd | 5 man/StatPlot.Rd | 115 ++++- man/annotation_block_fill_graphics.Rd | 8 man/annotation_block_graphics.Rd | 12 man/heatmap_border_spec.Rd |only man/major_grid.Rd |only 17 files changed, 874 insertions(+), 162 deletions(-)
Title: Convert 'sjPlot' HTML-Tables to R 'data.frame'
Description: A small set of helper functions to convert 'sjPlot'
HTML-tables to R data.frame objects / knitr::kable-tables.
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between sjtable2df versions 0.0.5 dated 2026-01-18 and 0.0.6 dated 2026-08-01
DESCRIPTION | 8 MD5 | 12 build/vignette.rds |binary inst/doc/sjtable2df_overview.R | 45 -- inst/doc/sjtable2df_overview.html | 819 +++++++++++++++++++------------------- inst/doc/sjtable2df_overview.qmd | 45 -- vignettes/sjtable2df_overview.qmd | 45 -- 7 files changed, 490 insertions(+), 484 deletions(-)
Title: Interface to 'The Reptile Database' Taxon Data
Description: Provides tools to search, access, and format taxonomic information
from 'The Reptile Database' (<https://reptile-database.org>) directly within 'R'.
Users can retrieve species-level data, distribution, etymology, synonyms,
common names, and other relevant information for reptiles. Designed for
taxonomists, ecologists, and biodiversity researchers.
Author: Paul Efren Santos Andrade [aut, cre, cph]
Maintainer: Paul Efren Santos Andrade <paulefrens@gmail.com>
This is a re-admission after prior archival of version 0.0.1 dated 2025-07-09
Diff between reptiledbr versions 0.0.1 dated 2025-07-09 and 0.1.0 dated 2026-08-01
reptiledbr-0.0.1/reptiledbr/tests/testthat/test-test-reptiledbr.R |only reptiledbr-0.0.1/reptiledbr/vignettes/vignettes_reptiledbr |only reptiledbr-0.1.0/reptiledbr/DESCRIPTION | 21 reptiledbr-0.1.0/reptiledbr/LICENSE | 2 reptiledbr-0.1.0/reptiledbr/MD5 | 86 reptiledbr-0.1.0/reptiledbr/NAMESPACE | 1 reptiledbr-0.1.0/reptiledbr/NEWS.md |only reptiledbr-0.1.0/reptiledbr/R/accessory_functions.R | 135 + reptiledbr-0.1.0/reptiledbr/R/get_reptilebd_data.R | 315 +-- reptiledbr-0.1.0/reptiledbr/R/internals.R | 44 reptiledbr-0.1.0/reptiledbr/R/search_reptiledbr.R | 879 +++++----- reptiledbr-0.1.0/reptiledbr/R/zzz.R | 383 +++- reptiledbr-0.1.0/reptiledbr/README.md | 39 reptiledbr-0.1.0/reptiledbr/build/vignette.rds |binary reptiledbr-0.1.0/reptiledbr/inst/doc/format_all.html | 272 +-- reptiledbr-0.1.0/reptiledbr/inst/doc/introduction.html | 185 -- reptiledbr-0.1.0/reptiledbr/inst/doc/local_search.html | 5 reptiledbr-0.1.0/reptiledbr/man/build_startup_message.Rd |only reptiledbr-0.1.0/reptiledbr/man/check_reptiledb_update.Rd |only reptiledbr-0.1.0/reptiledbr/man/check_update_status_silent.Rd |only reptiledbr-0.1.0/reptiledbr/man/clean_names_rdbr.Rd | 3 reptiledbr-0.1.0/reptiledbr/man/extract_attribute.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/figures/README-unnamed-chunk-3-1.png |binary reptiledbr-0.1.0/reptiledbr/man/figures/README-unnamed-chunk-3-2.png |binary reptiledbr-0.1.0/reptiledbr/man/format_all_attributes.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_comments.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_common_names.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_diagnosis.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_distribution.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_etymology.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_higher_taxa.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_references.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_reproduction.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_selected_attributes.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_subspecies.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_synonyms.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/format_types.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/get_attribute.Rd | 2 reptiledbr-0.1.0/reptiledbr/man/list_subspecies_reptiledbr.Rd | 6 reptiledbr-0.1.0/reptiledbr/man/reptiledbr-package.Rd | 11 reptiledbr-0.1.0/reptiledbr/man/reptiledbr_exact.Rd | 6 reptiledbr-0.1.0/reptiledbr/man/reptiledbr_partial.Rd | 5 reptiledbr-0.1.0/reptiledbr/man/search_reptiledbr.Rd | 5 reptiledbr-0.1.0/reptiledbr/tests/testthat/_snaps |only reptiledbr-0.1.0/reptiledbr/tests/testthat/helper-data.R |only reptiledbr-0.1.0/reptiledbr/tests/testthat/test-accessory_functions.R |only reptiledbr-0.1.0/reptiledbr/tests/testthat/test-get_reptilebd_data.R |only reptiledbr-0.1.0/reptiledbr/tests/testthat/test-internals.R |only reptiledbr-0.1.0/reptiledbr/tests/testthat/test-search_reptiledbr.R |only 49 files changed, 1428 insertions(+), 1005 deletions(-)
Title: Exchange Rate Regime Analysis
Description: Exchange rate regression and structural change tools
for estimating, testing, dating, and monitoring
(de facto) exchange rate regimes.
Author: Achim Zeileis [aut, cre] ,
Ajay Shah [ctb],
Ila Patnaik [ctb],
Anmol Sethy [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between fxregime versions 1.0-4 dated 2020-05-02 and 1.0-5 dated 2026-08-01
fxregime-1.0-4/fxregime/NEWS |only fxregime-1.0-4/fxregime/data/datalist |only fxregime-1.0-4/fxregime/inst/doc/CNY.Rnw |only fxregime-1.0-4/fxregime/inst/doc/CNY.pdf |only fxregime-1.0-4/fxregime/inst/doc/INR.Rnw |only fxregime-1.0-4/fxregime/inst/doc/INR.pdf |only fxregime-1.0-4/fxregime/vignettes/CNY.Rnw |only fxregime-1.0-4/fxregime/vignettes/INR.Rnw |only fxregime-1.0-5/fxregime/DESCRIPTION | 16 ++- fxregime-1.0-5/fxregime/MD5 | 44 ++++----- fxregime-1.0-5/fxregime/NEWS.md |only fxregime-1.0-5/fxregime/README.md |only fxregime-1.0-5/fxregime/build/partial.rdb |only fxregime-1.0-5/fxregime/build/vignette.rds |binary fxregime-1.0-5/fxregime/data/FXRatesCHF.rda |binary fxregime-1.0-5/fxregime/inst/CITATION | 55 +++-------- fxregime-1.0-5/fxregime/inst/doc/CNY.R | 111 +++++------------------ fxregime-1.0-5/fxregime/inst/doc/CNY.Rmd |only fxregime-1.0-5/fxregime/inst/doc/CNY.html |only fxregime-1.0-5/fxregime/inst/doc/INR.R | 93 ++++--------------- fxregime-1.0-5/fxregime/inst/doc/INR.Rmd |only fxregime-1.0-5/fxregime/inst/doc/INR.html |only fxregime-1.0-5/fxregime/man/FXRatesCHF.Rd | 2 fxregime-1.0-5/fxregime/man/confint.fxregimes.Rd | 10 +- fxregime-1.0-5/fxregime/man/fxlm.Rd | 4 fxregime-1.0-5/fxregime/man/fxmonitor.Rd | 2 fxregime-1.0-5/fxregime/man/fxregimes.Rd | 12 +- fxregime-1.0-5/fxregime/man/fxreturns.Rd | 4 fxregime-1.0-5/fxregime/man/fxtools.Rd | 4 fxregime-1.0-5/fxregime/vignettes/CNY.Rmd |only fxregime-1.0-5/fxregime/vignettes/INR.Rmd |only fxregime-1.0-5/fxregime/vignettes/fxregime.bib |only 32 files changed, 120 insertions(+), 237 deletions(-)
Title: Catastrophe Model Simulation and Adjustment
Description: Manipulation of catastrophe model outputs, including
tasks such as simulating year loss tables (YLTs) from event loss tables (ELTs),
adjusting the frequencies of events in YLTs to create new YLTs,
applying catastrophe exceedance of loss contracts (catXL),
applying hours clauses,
and calculating diagnostics from ELTs and YLTs, such as average annual loss
and exceedance probability curves. Frequency adjustment routines are
based on the paper "A new simulation algorithm for
more precise estimates of change in catastrophe risk models, with application to
hurricanes and climate change", Jewson, S. (2023); <doi:10.1007/s00477-023-02409-0>.
Version 0.0.2 no longer uses rust.
Author: Stephen Jewson [aut, cre]
Maintainer: Stephen Jewson <stephen.jewson@gmail.com>
Diff between catmodeling versions 0.0.1 dated 2026-07-23 and 0.0.2 dated 2026-08-01
catmodeling-0.0.1/catmodeling/R/extendr-wrappers.R |only catmodeling-0.0.1/catmodeling/cleanup |only catmodeling-0.0.1/catmodeling/cleanup.win |only catmodeling-0.0.1/catmodeling/configure |only catmodeling-0.0.1/catmodeling/configure.win |only catmodeling-0.0.1/catmodeling/man/addvectors.Rd |only catmodeling-0.0.1/catmodeling/man/rust_dist_haversine.Rd |only catmodeling-0.0.1/catmodeling/man/rust_hello_world.Rd |only catmodeling-0.0.1/catmodeling/man/rust_hours_clause_apply_part2.Rd |only catmodeling-0.0.1/catmodeling/man/rust_square.Rd |only catmodeling-0.0.1/catmodeling/src |only catmodeling-0.0.1/catmodeling/tools |only catmodeling-0.0.2/catmodeling/DESCRIPTION | 13 catmodeling-0.0.2/catmodeling/MD5 | 36 catmodeling-0.0.2/catmodeling/NAMESPACE | 1 catmodeling-0.0.2/catmodeling/R/000_imports.R | 38 catmodeling-0.0.2/catmodeling/R/801_hours_clause.R | 429 +++++----- catmodeling-0.0.2/catmodeling/R/806_hours_clause_compare_distance_routines.R | 89 +- catmodeling-0.0.2/catmodeling/man/examples/example_800_hours_clause_wrapper.R | 82 - catmodeling-0.0.2/catmodeling/man/hours_clause_wrapper_ylt.Rd | 2 20 files changed, 335 insertions(+), 355 deletions(-)
Title: Machine Learning Experiments
Description: Provides 'R6' objects to perform parallelized hyperparameter
optimization and cross-validation. Hyperparameter optimization can be
performed with Bayesian optimization (via 'rBayesianOptimization'
<https://cran.r-project.org/package=rBayesianOptimization>) and grid
search. The optimized hyperparameters can be validated using k-fold
cross-validation. Alternatively, hyperparameter optimization and
validation can be performed with nested cross-validation. While
'mlexperiments' focuses on core wrappers for machine learning
experiments, additional learner algorithms can be supplemented by
inheriting from the provided learner base class.
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between mlexperiments versions 1.0.0 dated 2026-01-16 and 1.0.1 dated 2026-08-01
DESCRIPTION | 8 MD5 | 56 +- build/vignette.rds |binary inst/doc/mlexperiments_knn_binary.R | 164 +++++--- inst/doc/mlexperiments_knn_binary.html | 183 ++++++--- inst/doc/mlexperiments_knn_binary.qmd | 164 +++++--- inst/doc/mlexperiments_knn_multiclass.html | 3 inst/doc/mlexperiments_rpart_binary.R | 378 +++++++++--------- inst/doc/mlexperiments_rpart_binary.html | 541 +++++++++++++-------------- inst/doc/mlexperiments_rpart_binary.qmd | 381 +++++++++---------- inst/doc/mlexperiments_rpart_multiclass.html | 3 inst/doc/mlexperiments_rpart_regression.html | 3 inst/doc/mlexperiments_starter.html | 3 man/LearnerGlm.Rd | 96 ++-- man/LearnerKnn.Rd | 90 ++-- man/LearnerLm.Rd | 96 ++-- man/LearnerRpart.Rd | 88 ++-- man/MLBase.Rd | 87 ++-- man/MLCrossValidation.Rd | 170 ++++---- man/MLExperimentsBase.Rd | 136 +++--- man/MLLearnerBase.Rd | 352 ++++++++--------- man/MLNestedCV.Rd | 182 ++++----- man/MLTuneParameters.Rd | 187 ++++----- tests/testthat/test-fold_equality.R | 22 - tests/testthat/test-glm.R | 24 - tests/testthat/test-glm_predictions.R | 22 - vignettes/mlexperiments_knn_binary.qmd | 164 +++++--- vignettes/mlexperiments_rpart_binary.qmd | 381 +++++++++---------- vignettes/rpart_chart_bin.png |binary 29 files changed, 2120 insertions(+), 1864 deletions(-)
Title: Power Analysis for Generalised Linear Mixed Models by Simulation
Description: Calculate power for generalised linear mixed models, using
simulation. Designed to work with models fit using the 'lme4' package.
Described in Green and MacLeod, 2016 <doi:10.1111/2041-210X.12504>.
Author: Peter Green [aut, cre] ,
Catriona MacLeod [aut],
Phillip Alday [ctb]
Maintainer: Peter Green <simr.peter@gmail.com>
Diff between simr versions 1.0.9 dated 2026-03-29 and 1.0.10 dated 2026-08-01
DESCRIPTION | 8 ++-- MD5 | 25 ++++++++------- NEWS.md | 6 +++ R/binomial.R | 53 ++++++++++++++++++++++++++++++++ R/doFit.R | 21 ++++++++----- R/new.R | 46 ++++++++++++++++++++-------- build/vignette.rds |binary inst/doc/examples.html | 66 +++++++++++++++++++++++++++++++++++------ inst/doc/fromscratch.html | 2 - man/simr-package.Rd | 1 tests/testthat/test_binomial.R | 16 +++++++++ tests/testthat/test_fit.R |only tests/testthat/test_new.R | 24 ++++++++++++++ tests/testthat/test_powerSim.R | 2 - 14 files changed, 221 insertions(+), 49 deletions(-)
Title: Matrices for Repeat-Sales Price Indexes
Description: Calculate the matrices in
Shiller (1991, <doi:10.1016/S1051-1377(05)80028-2>) that serve as the
foundation for many repeat-sales price indexes.
Author: Steve Martin [aut, cre, cph]
Maintainer: Steve Martin <marberts@protonmail.com>
Diff between rsmatrix versions 0.2.10 dated 2026-05-07 and 0.2.11 dated 2026-08-01
rsmatrix-0.2.10/rsmatrix/tests/testthat |only rsmatrix-0.2.10/rsmatrix/tests/testthat.R |only rsmatrix-0.2.11/rsmatrix/DESCRIPTION | 13 rsmatrix-0.2.11/rsmatrix/MD5 | 40 rsmatrix-0.2.11/rsmatrix/NEWS.md | 4 rsmatrix-0.2.11/rsmatrix/R/rs_matrix.R | 188 - rsmatrix-0.2.11/rsmatrix/R/rs_pairs.R | 17 rsmatrix-0.2.11/rsmatrix/R/rs_var.R | 38 rsmatrix-0.2.11/rsmatrix/build/partial.rdb |binary rsmatrix-0.2.11/rsmatrix/build/vignette.rds |binary rsmatrix-0.2.11/rsmatrix/inst/CITATION | 2 rsmatrix-0.2.11/rsmatrix/inst/WORDLIST |only rsmatrix-0.2.11/rsmatrix/inst/doc/rsmatrix.R | 53 rsmatrix-0.2.11/rsmatrix/inst/doc/rsmatrix.Rmd | 49 rsmatrix-0.2.11/rsmatrix/inst/doc/rsmatrix.html | 1048 +++------- rsmatrix-0.2.11/rsmatrix/inst/tinytest |only rsmatrix-0.2.11/rsmatrix/man/rs_matrix.Rd | 15 rsmatrix-0.2.11/rsmatrix/man/rs_pairs.Rd | 12 rsmatrix-0.2.11/rsmatrix/man/rs_var.Rd | 21 rsmatrix-0.2.11/rsmatrix/tests/Examples/rsmatrix-Ex.Rout.save | 3 rsmatrix-0.2.11/rsmatrix/tests/spelling.R |only rsmatrix-0.2.11/rsmatrix/tests/tinytest.R |only rsmatrix-0.2.11/rsmatrix/vignettes/rsmatrix.Rmd | 49 23 files changed, 650 insertions(+), 902 deletions(-)
Title: Muscle Near-Infrared Spectroscopy Processing and Analysis
Description: Read, process, and analyse data from muscle near-infrared
spectroscopy (mNIRS) devices. Import raw data from file and return
time-series data and metadata. Standardised methods for cleaning,
filtering, transforming, and analysing mNIRS data. Custom plot theme
and colour palette. Intended for mNIRS researchers and practitioners
in exercise physiology, sports science, and clinical practice.
Author: Jem Arnold [aut, cre, cph]
Maintainer: Jem Arnold <jem.arnold@gmail.com>
Diff between mnirs versions 0.6.5 dated 2026-06-01 and 0.7.0 dated 2026-08-01
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Title: Reptile Database Data
Description: Provides easy access to 'The Reptile Database', a comprehensive catalogue of all living reptile species and their classification. This package includes taxonomic data for over 10,000 reptile species, approximately 2,800 of which are subspecies, covering all extant reptiles. The dataset features taxonomic names, synonyms, distribution data, type specimens, and literature references, making it ready for research and analysis. Data is sourced from 'The Reptile Database' <http://www.reptile-database.org/>.
Author: Paul Efren Santos Andrade [aut, cre]
Maintainer: Paul Efren Santos Andrade <paulefrens@gmail.com>
Diff between reptiledb.data versions 0.0.0.2 dated 2026-01-08 and 0.0.1 dated 2026-08-01
DESCRIPTION | 10 - MD5 | 22 ++- NAMESPACE | 2 NEWS.md |only R/chek_reptiledb_status.R | 2 R/clean_reptile_data.R |only R/fetch_latest_reptile_data.R |only R/internal.R | 22 +++ R/reptiledb.R | 41 ++++++ README.md | 231 ++++++++++++++++++++------------------- data/reptiledb_062026.rda |only man/check_data_update.Rd | 2 man/clean_reptile_data.Rd |only man/fetch_latest_reptile_data.Rd |only man/reptiledb_062026.Rd |only tests/testthat/test-fetch_data.R |only 16 files changed, 204 insertions(+), 128 deletions(-)
More information about reptiledb.data at CRAN
Permanent link
Title: Easy and Efficient Batch Processing of Regression Models
Description: Easily processes batches of univariate or multivariate
regression models. Returns results in a tidy format and generates
visualization plots for straightforward interpretation (Wang,
Shixiang, et al. (2025) <DOI:10.1002/mdr2.70028>).
Author: Shixiang Wang [aut, cre] ,
Yun Peng [aut] ,
Chenyang Shu [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between bregr versions 1.4.0 dated 2026-01-18 and 1.5.0 dated 2026-08-01
DESCRIPTION | 10 MD5 | 68 +++--- NAMESPACE | 9 NEWS.md | 36 +++ R/01-class.R | 9 R/02-pipeline.R | 23 +- R/04-show.R | 16 + R/07-diagnostics.R | 111 ++++++++++ R/09-seed.R |only R/98-utils.R | 9 inst/doc/bregr-group-by.html | 16 - inst/doc/model-config.html | 36 +-- inst/doc/quick-analyze-cancer-data.html | 10 inst/doc/save-model-file.R | 12 - inst/doc/save-model-file.Rmd | 12 - inst/doc/save-model-file.html | 12 - inst/doc/supported-models.R | 1 inst/doc/supported-models.Rmd | 1 inst/doc/supported-models.html | 143 ++++++------- man/accessors.Rd | 1 man/br_diagnose.Rd | 1 man/br_get_model_stats.Rd |only man/br_predict.Rd | 3 man/br_seed.Rd |only man/br_seed_model.Rd |only man/br_seed_screen.Rd |only man/br_seed_select.Rd |only man/br_show_fitted_line.Rd | 12 - man/br_show_fitted_line_2d.Rd | 8 man/pipeline.Rd | 14 + man/print.breg.Rd | 14 - tests/testthat/Rplots.pdf |only tests/testthat/test-nonstandard-names.R |only tests/testthat/test-roxytest-testexamples-02-pipeline.R | 17 + tests/testthat/test-roxytest-testexamples-04-show.R | 16 - tests/testthat/test-roxytest-testexamples-07-diagnostics.R | 12 + tests/testthat/test-roxytest-testexamples-09-seed.R |only tests/testthat/test-seed.R |only vignettes/save-model-file.Rmd | 12 - vignettes/supported-models.Rmd | 1 40 files changed, 454 insertions(+), 191 deletions(-)