Title: Programmatic Access to Data and Statistics from the World Bank
API
Description: Search and download data from the World Bank Data API. Includes
support for mutliple languages, access to annual, quarterly, and monthly
data.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Jesse Piburn [aut] ,
The World Bank [dtc]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between wbstats versions 1.1 dated 2025-09-14 and 1.2 dated 2026-08-28
wbstats-1.1/wbstats/R/utils-pipe.R |only wbstats-1.1/wbstats/data/wb_cachelist.RData |only wbstats-1.1/wbstats/man/figures/ggplot2-1.png |only wbstats-1.1/wbstats/man/figures/readme-chart-1.png |only wbstats-1.1/wbstats/man/pipe.Rd |only wbstats-1.1/wbstats/tests/testthat |only wbstats-1.1/wbstats/tests/testthat.R |only wbstats-1.1/wbstats/tools |only wbstats-1.2/wbstats/DESCRIPTION | 25 wbstats-1.2/wbstats/MD5 | 93 +- wbstats-1.2/wbstats/NAMESPACE | 25 wbstats-1.2/wbstats/NEWS.md | 13 wbstats-1.2/wbstats/R/build_urls.R | 133 +-- wbstats-1.2/wbstats/R/end_points.R | 34 wbstats-1.2/wbstats/R/format-data.R | 125 +- wbstats-1.2/wbstats/R/search.R | 51 - wbstats-1.2/wbstats/R/sysdata.rda |binary wbstats-1.2/wbstats/R/update_cache.R | 20 wbstats-1.2/wbstats/R/utils.R | 28 wbstats-1.2/wbstats/R/wb_country_coverage.R |only wbstats-1.2/wbstats/R/wb_data.R | 218 ++--- wbstats-1.2/wbstats/R/wbstats-package.R | 14 wbstats-1.2/wbstats/R/zzz.R | 6 wbstats-1.2/wbstats/README.md | 158 ++- wbstats-1.2/wbstats/build/vignette.rds |binary wbstats-1.2/wbstats/data/wb_cachelist.rda |only wbstats-1.2/wbstats/inst/doc/wbstats.Rmd | 500 +++++++---- wbstats-1.2/wbstats/inst/doc/wbstats.html | 553 ++++++++----- wbstats-1.2/wbstats/inst/tinytest |only wbstats-1.2/wbstats/man/figures/logo.svg | 48 - wbstats-1.2/wbstats/man/figures/readme-gdppc-vs-lifexp.png |only wbstats-1.2/wbstats/man/wb_cache.Rd | 25 wbstats-1.2/wbstats/man/wb_cachelist.Rd | 13 wbstats-1.2/wbstats/man/wb_country_coverage.Rd |only wbstats-1.2/wbstats/man/wb_data.Rd | 183 ++-- wbstats-1.2/wbstats/man/wb_end_point_info.Rd | 28 wbstats-1.2/wbstats/man/wb_indicators.Rd | 40 wbstats-1.2/wbstats/man/wb_search.Rd | 48 - wbstats-1.2/wbstats/man/wbstats.Rd | 35 wbstats-1.2/wbstats/tests/tinytest.R |only wbstats-1.2/wbstats/vignettes/wbstats.Rmd | 500 +++++++---- 41 files changed, 1684 insertions(+), 1232 deletions(-)
More information about VanillaCalendar at CRAN
Permanent link
Title: Parse 'User-Agent' Strings
Description: Parses HTTP user agent strings and returns user agent, device and OS information.
This is a ‘V8’-backed package that uses the UA, device and OS definitions from the ‘ua-parser’
project <https://github.com/ua-parser>.
Author: Bob Rudis [aut, cph],
Greg Hunt [aut, cre, cph],
Lindsey Simon [aut] ,
Tobie Langel [aut] ,
Colman Humphrey [ctb],
Jim Vine [ctb]
Maintainer: Greg Hunt <greg@firmansyah.com>
Diff between uaparserjs versions 0.4.0 dated 2026-07-02 and 0.4.1 dated 2026-08-28
uaparserjs-0.4.0/uaparserjs/README.md |only uaparserjs-0.4.1/uaparserjs/DESCRIPTION | 13 ++-- uaparserjs-0.4.1/uaparserjs/MD5 | 24 +++++--- uaparserjs-0.4.1/uaparserjs/NEWS.md | 5 + uaparserjs-0.4.1/uaparserjs/R/uaparser.R | 15 ++--- uaparserjs-0.4.1/uaparserjs/R/utils.R | 2 uaparserjs-0.4.1/uaparserjs/R/zzz.r | 6 -- uaparserjs-0.4.1/uaparserjs/inst/js/bundle.js | 2 uaparserjs-0.4.1/uaparserjs/inst/tinytest/test_exhaustive.R | 27 ++++------ uaparserjs-0.4.1/uaparserjs/inst/tinytest/test_multirow.R | 21 ++++--- uaparserjs-0.4.1/uaparserjs/inst/tinytest/tests/test_device.yaml | 10 +++ uaparserjs-0.4.1/uaparserjs/man/figures |only uaparserjs-0.4.1/uaparserjs/tests/test_device.yaml |only uaparserjs-0.4.1/uaparserjs/tests/test_os.yaml |only uaparserjs-0.4.1/uaparserjs/tests/test_ua.yaml |only 15 files changed, 73 insertions(+), 52 deletions(-)
Title: Design and Analysis Tools for Target Trial Emulation
Description: Design and analysis tools for target trial emulation using longitudinal observational data. Functions are provided for checking person-period data, expanding longitudinal data into sequentially nested trials, estimating inverse probability weights for intention-to-treat and per-protocol analyses, and assessing weight distributions and covariate balance. Additional functions fit weighted pooled discrete-time outcome models, obtain standardized risks and treatment contrasts, and estimate weighted Kaplan-Meier and Aalen-Johansen curves. Two worked examples based on fully synthetic data illustrate an active-comparator new-user study comparing sodium-glucose cotransporter 2 inhibitors with dipeptidyl peptidase-4 inhibitors and an analysis of sequentially nested trials comparing angiotensin receptor blocker and calcium channel blocker strategies.
Author: Hisashi Noma [aut, cre]
Maintainer: Hisashi Noma <noma@ism.ac.jp>
Diff between TTE versions 1.1.1 dated 2026-08-02 and 1.1.2 dated 2026-08-28
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- NEWS.md | 6 +++++- man/SGLT2.Rd | 2 +- man/TTE-package.Rd | 2 +- 5 files changed, 16 insertions(+), 11 deletions(-)
Title: Statistical Framework for Co-Mediators of Zero-Inflated
Single-Cell Data
Description: A causal mediation framework for single-cell data that incorporates two key features ('MedZIsc', pronounced Magics): (1) zero-inflation using beta regression and (2) overdispersed expression counts using negative binomial regression. This approach also includes a screening step based on penalized and marginal models to handle high-dimensionality. Full methodological details are available in our recent preprint by Ahn S et al. (2025) <doi:10.48550/arXiv.2507.06113>.
Author: Seungjun Ahn [cre, aut] ,
Zhigang Li [ctb]
Maintainer: Seungjun Ahn <seungjun.ahn@mountsinai.org>
Diff between MedZIsc versions 0.0.4 dated 2025-07-16 and 0.0.5 dated 2026-08-28
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NAMESPACE | 1 + R/Magics.R | 9 +++++---- R/compute_M.R |only man/Magics.Rd | 9 +++++---- man/compute_M.Rd |only 7 files changed, 21 insertions(+), 16 deletions(-)
Title: Download and Visualize Essential Global Heating Data
Description: Provides easy access to essential climate change datasets to non-climate experts. Users can download the latest raw data from authoritative sources and view it via pre-defined 'ggplot2' charts. Datasets include atmospheric CO2, methane, emissions, instrumental and proxy temperature records, CMIP6 projections, sea levels, Arctic/Antarctic sea-ice, Hurricanes, Wildfires, and Paleoclimate data. Sources include: NOAA Mauna Loa Laboratory <https://gml.noaa.gov/ccgg/trends/data.html>, Global Carbon Project <https://www.globalcarbonproject.org/carbonbudget/>, NASA GISTEMP <https://data.giss.nasa.gov/gistemp/>, National Snow and Sea Ice Data Center <https://nsidc.org/home>, CSIRO <https://research.csiro.au/slrwavescoast/sea-level/measurements-and-data/sea-level-data/>, NOAA Laboratory for Satellite Altimetry <https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/> and HURDAT Atlantic Hurricane Database <https://www.aoml.noaa.gov/hrd/hurdat/Data_Storm.htm [...truncated...]
Author: Hernando Cortina [aut, cre]
Maintainer: Hernando Cortina <hch@alum.mit.edu>
Diff between hockeystick versions 0.9.1 dated 2026-07-08 and 1.0.0 dated 2026-08-28
DESCRIPTION | 16 +++--- MD5 | 79 +++++++++++++++++--------------- NAMESPACE | 76 +++++++++++++++++++------------ NEWS.md | 6 ++ R/2kyears_temp.R | 2 R/carbon.R | 2 R/daily_temp.R | 8 +-- R/data_cache.R | 3 + R/emissions.R | 2 R/fires.R | 16 +++--- R/future_climate.R |only R/hurricanes.R | 5 -- R/icecurves.R | 2 R/instrumental_temp.R | 2 R/methane.R | 2 R/paleo.R | 4 - R/seaice.R | 2 R/sealevel.R | 4 - README.md | 46 ++++++++++++------ inst/WORDLIST | 20 ++++++++ inst/doc/usinghockeystick.R | 14 +++++ inst/doc/usinghockeystick.html | 88 ++++++++++++++++++++++-------------- inst/doc/usinghockeystick.qmd | 17 ++++++ man/figures/README-carbon-1.png |binary man/figures/README-cmip6-1.png |only man/figures/README-cmip6anom-1.png |only man/figures/README-dailytemp-1.png |binary man/figures/README-fires-1.png |binary man/figures/README-fires-2.png |binary man/figures/README-grid-1.png |binary man/figures/README-icecurves-1.png |binary man/figures/README-methane-1.png |binary man/figures/README-si-1.png |binary man/figures/README-stripes-1.png |binary man/figures/README-stripes2-1.png |binary man/figures/README-temp-1.png |binary man/figures/README-tempcarbon-1.png |binary man/get_cmip6.Rd |only man/get_cmip6_anom.Rd |only man/hockeystick-package.Rd | 4 - man/plot_cmip6.Rd |only man/plot_cmip6_anom.Rd |only man/plot_dailytemp.Rd | 2 vignettes/usinghockeystick.qmd | 17 ++++++ 44 files changed, 291 insertions(+), 148 deletions(-)
Title: Numerical Tools for 'Rcpp' and Lambda Functions
Description: Provides a 'C++' API for routinely used numerical tools such as integration,
root-finding, and optimization, where function arguments are given as
lambdas. This facilitates 'Rcpp' programming, enabling the development of
'R'-like code in 'C++' where functions can be defined on the fly and use
variables in the surrounding environment.
Author: Andrew M. Raim [aut, cre]
Maintainer: Andrew M. Raim <andrew.raim@gmail.com>
Diff between fntl versions 0.1.3.1 dated 2026-07-30 and 0.1.3.2 dated 2026-08-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- inst/doc/fntl.pdf |binary inst/doc/fntl.qmd | 2 +- inst/include/util.h | 2 ++ vignettes/fntl.qmd | 2 +- 6 files changed, 13 insertions(+), 11 deletions(-)
Title: Goodness-of-Fit and Calibration Tests for Logistic Regression
Description: Provides a unified battery of goodness-of-fit and calibration
tests for binary logistic regression, runnable in a single call via
'run.all.gof()'. Around twenty-five tests spanning five decades of
literature are aggregated and grouped by the departure each is built to
detect: global and standardized statistics, partition tests, directed and
covariate-space tests, smoothing and resampling tests, and calibration
tests. Each is obtained from its own package where installed and
attributed to its authors. The package also implements the author's own
procedures for sparse data, where the Hosmer-Lemeshow test loses power:
the omnibus Ebrahim-Farrington test, the directed 'EDGE' test,
'DeepGOF-1' (a pretrained convolutional statistic whose level comes from the
analyst's own parametric bootstrap rather than from the network), a
Cauchy-combination ensemble, 'legoft()' (a pretrained combination whose
weights are fixed offline and ship frozen, so two analysts obtain the same
p-value), and 'shrink. [...truncated...]
Author: Ebrahim Khaled Ebrahim [aut, cre]
Maintainer: Ebrahim Khaled Ebrahim <ebrahimkhaled@alexu.edu.eg>
Diff between ebrahim.gof versions 2.4.0 dated 2026-07-22 and 2.6.0 dated 2026-08-28
DESCRIPTION | 40 MD5 | 24 NAMESPACE | 88 NEWS.md | 750 +++++--- R/deepgof.R |only R/legoft.R |only R/run_all_gof.R | 2925 ++++++++++++++++++--------------- R/shrink_gof.R |only R/sysdata.rda |only inst/doc/ebrahim-farrington-intro.html | 4 man/deepgof1.Rd |only man/legoft.Rd |only man/legoft.localize.Rd |only man/run.all.gof.Rd | 356 +++- man/shrink.gof.Rd |only tests/testthat/test-deepgof1.R |only tests/testthat/test-lecessie-algebra.R |only tests/testthat/test-run-all-gof.R | 354 ++- 18 files changed, 2636 insertions(+), 1905 deletions(-)
Title: Data from the GLM Book by Dobson and Barnett
Description: Example datasets from the book "An Introduction to Generalised Linear Models" (4th edition) (Year: 2018, <isbn:9781138741515>) by Dobson and Barnett.
Author: Adrian Barnett [aut, cre, cph]
Maintainer: Adrian Barnett <a.barnett@qut.edu.au>
Diff between dobson versions 0.4 dated 2018-11-20 and 0.4.1 dated 2026-08-28
dobson-0.4.1/dobson/DESCRIPTION | 18 +++--- dobson-0.4.1/dobson/MD5 | 92 ++++++++++++++++---------------- dobson-0.4.1/dobson/NAMESPACE | 2 dobson-0.4.1/dobson/NEWS.md |only dobson-0.4.1/dobson/README.md |only dobson-0.4.1/dobson/data/achieve.rda |only dobson-0.4.1/dobson/data/anthers.rda |binary dobson-0.4.1/dobson/data/doctors.rda |binary dobson-0.4.1/dobson/man/Cars.Rd | 56 +++++++++---------- dobson-0.4.1/dobson/man/PLOS.Rd | 2 dobson-0.4.1/dobson/man/achieve.Rd |only dobson-0.4.1/dobson/man/aids.Rd | 54 +++++++++--------- dobson-0.4.1/dobson/man/anthers.Rd | 60 ++++++++++---------- dobson-0.4.1/dobson/man/balanced.Rd | 6 +- dobson-0.4.1/dobson/man/beetle.Rd | 54 +++++++++--------- dobson-0.4.1/dobson/man/birthweight.Rd | 52 +++++++++--------- dobson-0.4.1/dobson/man/carbohydrate.Rd | 58 ++++++++++---------- dobson-0.4.1/dobson/man/cholesterol.Rd | 4 - dobson-0.4.1/dobson/man/chronic.Rd | 52 +++++++++--------- dobson-0.4.1/dobson/man/doctors.Rd | 57 ++++++++++--------- dobson-0.4.1/dobson/man/dogs.Rd | 58 ++++++++++---------- dobson-0.4.1/dobson/man/ear.Rd | 56 +++++++++---------- dobson-0.4.1/dobson/man/failure.Rd | 52 +++++++++--------- dobson-0.4.1/dobson/man/graduates.Rd | 2 dobson-0.4.1/dobson/man/hepatitis.Rd | 60 ++++++++++---------- dobson-0.4.1/dobson/man/hiroshima.Rd | 2 dobson-0.4.1/dobson/man/housing.Rd | 52 +++++++++--------- dobson-0.4.1/dobson/man/insurance.Rd | 54 +++++++++--------- dobson-0.4.1/dobson/man/leukemia.Rd | 54 +++++++++--------- dobson-0.4.1/dobson/man/machine.Rd | 4 - dobson-0.4.1/dobson/man/melanoma.Rd | 54 +++++++++--------- dobson-0.4.1/dobson/man/mortality.Rd | 52 +++++++++--------- dobson-0.4.1/dobson/man/moths.Rd | 62 ++++++++++----------- dobson-0.4.1/dobson/man/plant.dried.Rd | 9 +-- dobson-0.4.1/dobson/man/plants.Rd | 46 ++++++++-------- dobson-0.4.1/dobson/man/plasma.Rd | 6 +- dobson-0.4.1/dobson/man/poisson.Rd | 46 ++++++++-------- dobson-0.4.1/dobson/man/remission.Rd | 52 +++++++++--------- dobson-0.4.1/dobson/man/senility.Rd | 50 ++++++++--------- dobson-0.4.1/dobson/man/stroke.wide.Rd | 30 ++++------ dobson-0.4.1/dobson/man/sugar.Rd | 6 +- dobson-0.4.1/dobson/man/survival.Rd | 52 +++++++++--------- dobson-0.4.1/dobson/man/tumor.Rd | 56 +++++++++---------- dobson-0.4.1/dobson/man/ulcer.Rd | 54 +++++++++--------- dobson-0.4.1/dobson/man/unbalanced.Rd | 4 - dobson-0.4.1/dobson/man/vaccine.Rd | 46 ++++++++-------- dobson-0.4.1/dobson/man/waist.Rd | 60 ++++++++++---------- dobson-0.4/dobson/R |only dobson-0.4/dobson/data/achievement.rda |only dobson-0.4/dobson/man/achievement.Rd |only dobson-0.4/dobson/man/dobson.Rd |only 51 files changed, 826 insertions(+), 820 deletions(-)
Title: Deep Compositional Spatial Models
Description: Deep compositional spatial models are standard spatial covariance
models coupled with an injective warping function of the spatial
domain. The warping function is constructed through a composition
of multiple elemental injective functions in a deep-learning
framework. The package implements two cases for the univariate setting; first,
when these warping functions are known up to some weights that
need to be estimated, and, second, when the weights in each layer are random.
In the multivariate setting only the former case is available.
Estimation and inference is done using `tensorflow`, which makes use of
graphics processing units.
For more details see Zammit-Mangion et al. (2022) <doi:10.1080/01621459.2021.1887741>,
Vu et al. (2022) <doi:10.5705/ss.202020.0156>,
Vu et al. (2023) <doi:10.1016/j.spasta.2023.100742>, and
Shao et al. (2025) <doi:10.48550/arXiv.2505.12548>.
Author: Andrew Zammit-Mangion [aut],
Quan Vu [aut, cre],
Xuanjie Shao [aut]
Maintainer: Quan Vu <quanvustats@gmail.com>
Diff between deepspat versions 0.3.1 dated 2025-11-25 and 0.3.2 dated 2026-08-28
deepspat-0.3.1/deepspat/R/NMLL_nn_ST.R |only deepspat-0.3.1/deepspat/R/summary.deepspat_MSP.R |only deepspat-0.3.1/deepspat/R/summary.deepspat_rPP.R |only deepspat-0.3.1/deepspat/R/tent.R |only deepspat-0.3.1/deepspat/man/summary.deepspat_MSP.Rd |only deepspat-0.3.1/deepspat/man/summary.deepspat_rPP.Rd |only deepspat-0.3.2/deepspat/DESCRIPTION | 12 deepspat-0.3.2/deepspat/MD5 | 111 deepspat-0.3.2/deepspat/NAMESPACE | 29 deepspat-0.3.2/deepspat/NEWS.md | 27 deepspat-0.3.2/deepspat/R/AFF.R | 250 - deepspat-0.3.2/deepspat/R/NMLL.R | 48 deepspat-0.3.2/deepspat/R/RBF.R | 70 deepspat-0.3.2/deepspat/R/bisquare.R | 90 deepspat-0.3.2/deepspat/R/bisquare_basis.R | 198 - deepspat-0.3.2/deepspat/R/cov_fns.R | 235 - deepspat-0.3.2/deepspat/R/cov_fns_nn.R | 156 - deepspat-0.3.2/deepspat/R/deepspat.R | 16 deepspat-0.3.2/deepspat/R/deepspat_main.R | 541 ++-- deepspat-0.3.2/deepspat/R/deepspat_main_GP.R | 721 ++--- deepspat-0.3.2/deepspat/R/deepspat_main_MSP.R | 851 +++--- deepspat-0.3.2/deepspat/R/deepspat_main_bivar_GP.R | 1739 ++++++------- deepspat-0.3.2/deepspat/R/deepspat_main_nn_GP.R | 685 ++--- deepspat-0.3.2/deepspat/R/deepspat_main_nn_ST_GP.R | 1114 ++++---- deepspat-0.3.2/deepspat/R/deepspat_main_rPP.R | 764 ++--- deepspat-0.3.2/deepspat/R/deepspat_main_trivar_GP.R | 1871 +++++++------- deepspat-0.3.2/deepspat/R/init_learn_rates.R | 62 deepspat-0.3.2/deepspat/R/plot.deepspat.R |only deepspat-0.3.2/deepspat/R/predict.deepspat.R | 8 deepspat-0.3.2/deepspat/R/predict.deepspat_GP.R | 229 - deepspat-0.3.2/deepspat/R/predict.deepspat_MSP.R |only deepspat-0.3.2/deepspat/R/predict.deepspat_bivar_GP.R | 545 ++-- deepspat-0.3.2/deepspat/R/predict.deepspat_nn_GP.R | 244 + deepspat-0.3.2/deepspat/R/predict.deepspat_nn_ST_GP.R | 346 +- deepspat-0.3.2/deepspat/R/predict.deepspat_rPP.R |only deepspat-0.3.2/deepspat/R/predict.deepspat_trivar_GP.R | 85 deepspat-0.3.2/deepspat/R/print.deepspat.R |only deepspat-0.3.2/deepspat/R/sigmoid.R | 38 deepspat-0.3.2/deepspat/R/sim_data.R | 328 +- deepspat-0.3.2/deepspat/R/summary.deepspat.R |only deepspat-0.3.2/deepspat/R/train_step.R | 53 deepspat-0.3.2/deepspat/R/utils.R | 626 ++-- deepspat-0.3.2/deepspat/R/utils_error.R |only deepspat-0.3.2/deepspat/R/utils_tf.R | 161 - deepspat-0.3.2/deepspat/R/zzz.R | 142 - deepspat-0.3.2/deepspat/README.md | 108 deepspat-0.3.2/deepspat/man/deepspat.Rd | 30 deepspat-0.3.2/deepspat/man/deepspat_GP.Rd | 6 deepspat-0.3.2/deepspat/man/deepspat_MSP.Rd | 5 deepspat-0.3.2/deepspat/man/deepspat_bivar_GP.Rd | 6 deepspat-0.3.2/deepspat/man/deepspat_nn_GP.Rd | 4 deepspat-0.3.2/deepspat/man/deepspat_nn_ST_GP.Rd | 4 deepspat-0.3.2/deepspat/man/deepspat_rPP.Rd | 2 deepspat-0.3.2/deepspat/man/deepspat_trivar_GP.Rd | 4 deepspat-0.3.2/deepspat/man/plot.deepspat.Rd |only deepspat-0.3.2/deepspat/man/predict.deepspat.Rd | 4 deepspat-0.3.2/deepspat/man/predict.deepspat_GP.Rd | 10 deepspat-0.3.2/deepspat/man/predict.deepspat_MSP.Rd |only deepspat-0.3.2/deepspat/man/predict.deepspat_bivar_GP.Rd | 12 deepspat-0.3.2/deepspat/man/predict.deepspat_nn_GP.Rd | 10 deepspat-0.3.2/deepspat/man/predict.deepspat_nn_ST_GP.Rd | 10 deepspat-0.3.2/deepspat/man/predict.deepspat_rPP.Rd |only deepspat-0.3.2/deepspat/man/predict.deepspat_trivar_GP.Rd | 12 deepspat-0.3.2/deepspat/man/print.deepspat.Rd |only deepspat-0.3.2/deepspat/man/summary.deepspat.Rd |only 65 files changed, 6673 insertions(+), 5949 deletions(-)
Title: Bayesian Essentials with R
Description: Allows the reenactment of the R programs used in
the book Bayesian Essentials with R without further programming.
R code being available as well, they can be modified by the user
to conduct one's own simulations.
Marin J.-M. and Robert C. P. (2014) <doi:10.1007/978-1-4614-8687-9>.
Author: Jean-Michel Marin [aut, cre],
Christian P. Robert [aut]
Maintainer: Jean-Michel Marin <jean-michel.marin@umontpellier.fr>
This is a re-admission after prior archival of version 1.6 dated 2024-03-06
Diff between bayess versions 1.6 dated 2024-03-06 and 1.7 dated 2026-08-28
DESCRIPTION | 23 ++++++++++++++++------- MD5 | 4 ++-- README.md | 2 +- 3 files changed, 19 insertions(+), 10 deletions(-)
Title: Optimal Confidence Intervals for Visual Testing
Description: Identifies the optimal confidence level to represent the results of a set of pairwise tests as suggested by Armstrong and Poirier (2025) <doi:10.1017/pan.2024.24>.
Author: Dave Armstrong [aut, cre] ,
William Poirier [aut]
Maintainer: Dave Armstrong <davearmstrong.ps@gmail.com>
Diff between VizTest versions 0.7 dated 2026-03-03 and 0.8 dated 2026-08-28
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- R/functions.R | 14 +++++++++++++- build/vignette.rds |binary inst/doc/compact_letter_displays.html | 12 ++++++------ inst/doc/creating_forest_plots.html | 18 +++++++++--------- inst/doc/heatmaps.html | 19 +++++++++---------- inst/doc/sig_diffs_explanation.html | 20 ++++++++++---------- inst/doc/significance_brackets.html | 10 +++++----- man/geom_forestpoint.Rd | 5 +++++ man/geom_foreststripe.Rd | 5 +++++ man/geom_foresttable.Rd | 5 +++++ 12 files changed, 81 insertions(+), 55 deletions(-)
Title: Classification with Mixture Modelling
Description: Interface of 'MIXMOD' software for supervised, unsupervised and
semi-supervised classification with mixture modelling <doi: 10.18637/jss.v067.i06>.
Author: Florent Langrognet [aut],
Remi Lebret [aut],
Christian Poli [aut],
Serge Iovleff [aut],
Benjamin Auder [aut],
Parmeet Bhatia [ctb],
Anwuli Echenim [ctb],
Christophe Biernacki [ctb],
Gilles Celeux [ctb],
Gerard Govaert [ctb],
Julien Schueller [ctb],
Q [...truncated...]
Maintainer: Quentin Grimonprez <quentingrim@yahoo.fr>
Diff between Rmixmod versions 2.1.10 dated 2023-12-13 and 2.1.12 dated 2026-08-28
DESCRIPTION | 10 MD5 | 119 +- R/Mixmod.R | 451 +++++----- R/MixmodResults.R | 23 R/Strategy.R | 2 configure | 24 man/Rmixmod-package.Rd | 7 man/extract-methods.Rd | 60 - man/initialize-methods.Rd | 14 man/mixmodStrategy.Rd | 2 src/Makevars.in | 8 src/Makevars.win | 10 src/mixmod/Clustering/ClusteringMain.cpp | 11 src/mixmod/Clustering/ClusteringOutput.cpp | 54 - src/mixmod/Clustering/ClusteringStrategy.cpp | 8 src/mixmod/Clustering/ClusteringStrategyInit.cpp | 24 src/mixmod/DiscriminantAnalysis/Learn/LearnOutput.cpp | 54 - src/mixmod/DiscriminantAnalysis/Predict/PredictOutput.cpp | 50 - src/mixmod/Kernel/Algo/Algo.cpp | 2 src/mixmod/Kernel/Algo/CEMAlgo.cpp | 4 src/mixmod/Kernel/Algo/EMAlgo.cpp | 6 src/mixmod/Kernel/Algo/MAPAlgo.cpp | 2 src/mixmod/Kernel/Algo/MAlgo.cpp | 2 src/mixmod/Kernel/Algo/SEMAlgo.cpp | 8 src/mixmod/Kernel/Criterion/CVCriterion.cpp | 34 src/mixmod/Kernel/Criterion/CriterionOutput.cpp | 2 src/mixmod/Kernel/IO/BinaryData.cpp | 42 src/mixmod/Kernel/IO/GaussianData.cpp | 8 src/mixmod/Kernel/IO/Input.cpp | 2 src/mixmod/Kernel/IO/Label.cpp | 4 src/mixmod/Kernel/IO/Partition.cpp | 8 src/mixmod/Kernel/IO/ProbaOutput.cpp | 2 src/mixmod/Kernel/Model/Model.cpp | 74 - src/mixmod/Kernel/Parameter/BinaryEParameter.cpp | 8 src/mixmod/Kernel/Parameter/BinaryEjParameter.cpp | 6 src/mixmod/Kernel/Parameter/BinaryEkParameter.cpp | 6 src/mixmod/Kernel/Parameter/BinaryEkjParameter.cpp | 18 src/mixmod/Kernel/Parameter/BinaryEkjhParameter.cpp | 4 src/mixmod/Kernel/Parameter/BinaryParameter.cpp | 24 src/mixmod/Kernel/Parameter/CompositeParameter.cpp | 8 src/mixmod/Kernel/Parameter/GaussianEDDAParameter.cpp | 24 src/mixmod/Kernel/Parameter/GaussianGeneralParameter.cpp | 2 src/mixmod/Kernel/Parameter/GaussianHDDAParameter.cpp | 68 - src/mixmod/Kernel/Parameter/GaussianParameter.cpp | 2 src/mixmod/Kernel/Parameter/GaussianSphericalParameter.cpp | 8 src/mixmod/Kernel/Parameter/Parameter.cpp | 4 src/mixmod/Matrix/DiagMatrix.cpp | 2 src/mixmod/Matrix/SymmetricMatrix.cpp | 4 src/mixmod/Utilities/OutputAdapter.h |only src/mixmod/Utilities/Random.cpp | 12 src/mixmod/Utilities/Util.cpp | 14 src/mixmod/Utilities/Util.h | 1 src/mixmod/Utilities/exceptions/DCVException.h | 2 src/mixmod/Utilities/exceptions/DCVonlyInGaussianCaseException.h | 2 src/mixmod/Utilities/exceptions/Exception.h | 4 src/mixmod/Utilities/exceptions/InputException.h | 2 src/mixmod/Utilities/exceptions/NumericException.h | 2 src/mixmod/Utilities/exceptions/OtherException.h | 2 src/mixmod/Utilities/maths/Eigen.h | 8 src/mixmod_iostream/IOStreamUtil.cpp | 35 src/mixmod_iostream/NodeOpInput.cpp | 2 61 files changed, 706 insertions(+), 699 deletions(-)
Title: Lean Analytics and Robust Exploration Sidekick
Description: Auxiliary package for better/faster analytics, visualization, data mining, and machine
learning tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling,
Marketing Mix Modeling (Robyn), Exploratory, API, and Scrapper, it helps the analyst or
data scientist to get quick and robust results, without the need of repetitive coding or
advanced R programming skills.
Author: Bernardo Lares [aut, cre]
Maintainer: Bernardo Lares <laresbernardo@gmail.com>
Diff between lares versions 5.4.0 dated 2026-04-23 and 5.4.1 dated 2026-08-28
DESCRIPTION | 8 MD5 | 368 ++++++++++++------------- NAMESPACE | 592 +++++++++++++++++++++-------------------- R/confidence.R | 8 R/correlations.R | 6 R/google_sheets.R | 74 ++--- R/lares.R | 61 ++-- R/onehotencoding.R | 2 R/stocks.R | 2 R/utils_data.R | 50 ++- R/utils_system.R | 14 R/wrangling.R | 6 inst/doc/api-integrations.html | 4 inst/doc/data-wrangling.html | 22 - inst/doc/games.html | 4 inst/doc/machine-learning.html | 102 +++---- inst/doc/robyn_lares.html | 4 man/ROC.Rd | 38 +- man/autoline.Rd | 74 ++--- man/balance_data.Rd | 46 +-- man/bind_files.Rd | 74 ++--- man/bring_api.Rd | 100 +++--- man/cal_split.Rd | 74 ++--- man/categ_reducer.Rd | 46 +-- man/chr2num.Rd | 74 ++--- man/ci_lower.Rd | 4 man/ci_var.Rd | 4 man/clean_text.Rd | 64 ++-- man/clusterKmeans.Rd | 10 man/clusterOptimalK.Rd | 10 man/clusterVisualK.Rd | 10 man/conf_mat.Rd | 38 +- man/corr.Rd | 16 - man/corr_cross.Rd | 16 - man/corr_var.Rd | 34 +- man/crosstab.Rd | 28 - man/dalex_local.Rd | 8 man/dalex_residuals.Rd | 8 man/dalex_variable.Rd | 8 man/date_cuts.Rd | 46 +-- man/date_feats.Rd | 60 ++-- man/db_download.Rd | 98 +++--- man/db_upload.Rd | 98 +++--- man/df_str.Rd | 28 - man/dfr.Rd | 2 man/dft.Rd | 2 man/dist2d.Rd | 10 man/distr.Rd | 48 +-- man/dont_sleep.Rd | 74 ++--- man/encrypt_file.Rd | 20 - man/errors.Rd | 12 man/etf_sector.Rd | 10 man/export_plot.Rd | 74 ++--- man/export_results.Rd | 100 +++--- man/fb_accounts.Rd | 42 +- man/fb_ads.Rd | 42 +- man/fb_creatives.Rd | 42 +- man/fb_insights.Rd | 42 +- man/fb_process.Rd | 42 +- man/fb_report_check.Rd | 42 +- man/fb_rf.Rd | 42 +- man/fb_token.Rd | 42 +- man/file_name.Rd | 70 +--- man/filesGD.Rd | 24 - man/files_functions.Rd | 74 ++--- man/filterdata.Rd | 94 +----- man/font_exists.Rd | 74 ++--- man/forecast_arima.Rd | 4 man/formatColoured.Rd | 74 ++--- man/format_string.Rd | 120 ++++---- man/freqs.Rd | 56 +-- man/freqs_df.Rd | 56 +-- man/freqs_list.Rd | 56 +-- man/freqs_plot.Rd | 56 +-- man/gain_lift.Rd | 38 +- man/gemini_ask.Rd | 32 +- man/get_credentials.Rd | 20 - man/get_tweets.Rd | 20 - man/gg_fill_customs.Rd | 8 man/glued.Rd | 74 ++--- man/google_sheets.Rd | 24 - man/google_trends.Rd | 24 - man/gpt_ask.Rd | 36 +- man/gpt_prompter.Rd | 10 man/grepm.Rd | 74 ++--- man/h2o_automl.Rd | 26 - man/h2o_explainer.Rd | 8 man/h2o_predict.Rd | 26 - man/h2o_selectmodel.Rd | 100 +++--- man/h2o_shap.Rd | 4 man/haveInternet.Rd | 74 ++--- man/holidays.Rd | 78 ++--- man/image_metadata.Rd | 74 ++--- man/importxlsx.Rd | 74 ++--- man/impute.Rd | 76 ++--- man/ip_data.Rd | 103 +++---- man/iter_seeds.Rd | 26 - man/json2vector.Rd | 74 ++--- man/lares_pal.Rd | 8 man/lasso_vars.Rd | 54 +-- man/left_right.Rd | 46 +-- man/list_cats.Rd | 74 ++--- man/listfiles.Rd | 74 ++--- man/loglossBinary.Rd | 12 man/mail_send.Rd | 94 +++--- man/markdown2df.Rd | 74 ++--- man/maze_solve.Rd | 8 man/missingness.Rd | 32 +- man/model_metrics.Rd | 48 +-- man/model_preprocess.Rd | 26 - man/move_files.Rd | 74 ++--- man/mp3_get.Rd | 22 - man/mp3_trim.Rd | 6 man/mp3_update_tags.Rd | 6 man/mplot_conf.Rd | 26 - man/mplot_cuts.Rd | 26 - man/mplot_cuts_error.Rd | 26 - man/mplot_density.Rd | 26 - man/mplot_full.Rd | 26 - man/mplot_gain.Rd | 26 - man/mplot_importance.Rd | 26 - man/mplot_lineal.Rd | 26 - man/mplot_metrics.Rd | 26 - man/mplot_response.Rd | 26 - man/mplot_roc.Rd | 26 - man/mplot_splits.Rd | 26 - man/mplot_topcats.Rd | 26 - man/msplit.Rd | 100 +++--- man/myip.Rd | 76 ++--- man/ngrams.Rd | 18 - man/noPlot.Rd | 20 - man/normalize.Rd | 46 +-- man/num_abbr.Rd | 46 +-- man/ohe_commas.Rd | 54 +-- man/ohse.Rd | 60 ++-- man/outlier_tukey.Rd | 8 man/outlier_zscore.Rd | 8 man/outlier_zscore_plot.Rd | 8 man/plot_cats.Rd | 28 - man/plot_chord.Rd | 20 - man/plot_df.Rd | 28 - man/plot_nums.Rd | 28 - man/plot_palette.Rd | 8 man/plot_survey.Rd | 20 - man/plot_timeline.Rd | 20 - man/prophesize.Rd | 4 man/quants.Rd | 56 +-- man/queryDB.Rd | 20 - man/queryGA.Rd | 54 +-- man/quiet.Rd | 74 ++--- man/read.file.Rd | 74 ++--- man/reduce_pca.Rd | 14 man/reduce_tsne.Rd | 14 man/remove_stopwords.Rd | 18 - man/replaceall.Rd | 64 ++-- man/replacefactor.Rd | 46 +-- man/robyn_hypsbuilder.Rd | 8 man/robyn_marginal.Rd | 8 man/robyn_modelselector.Rd | 8 man/robyn_performance.Rd | 8 man/scrabble.Rd | 8 man/sentimentBreakdown.Rd | 18 - man/shap_var.Rd | 4 man/slackSend.Rd | 46 +-- man/statusbar.Rd | 74 ++--- man/stocks_hist.Rd | 24 - man/stocks_plots.Rd | 24 - man/stocks_report.Rd | 28 - man/sudoku_solver.Rd | 8 man/textCloud.Rd | 18 - man/textFeats.Rd | 64 ++-- man/textTokenizer.Rd | 64 ++-- man/theme_lares.Rd | 8 man/tic.Rd | 74 ++--- man/topics_rake.Rd | 18 - man/tree_var.Rd | 48 +-- man/try_require.Rd | 74 ++--- man/updateLares.Rd | 74 ++--- man/vector2text.Rd | 46 +-- man/warnifnot.Rd | 74 ++--- man/what_size.Rd | 74 ++--- man/winsorize.Rd | 8 man/wordle.Rd | 8 man/year_month.Rd | 46 +-- man/zerovar.Rd | 46 +-- 185 files changed, 4021 insertions(+), 4009 deletions(-)
Title: Direct Labels for Multicolor Plots
Description: An extensible framework
for automatically placing direct labels onto multicolor 'lattice' or
'ggplot2' plots.
Label positions are described using Positioning Methods
which can be re-used across several different plots.
There are heuristics for examining "trellis" and "ggplot" objects
and inferring an appropriate Positioning Method.
Author: Toby Dylan Hocking [aut, cre]
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between directlabels versions 2026.4.23 dated 2026-04-23 and 2026.8.27 dated 2026-08-28
DESCRIPTION | 13 ++++----- MD5 | 29 +++++++++++++------- NAMESPACE | 4 ++ NEWS | 4 ++ R/RcppExports.R |only R/isoreg_dp.R |only R/utility.function.R | 48 ++++++--------------------------- build/vignette.rds |binary inst/doc/examples.R | 2 - inst/doc/examples.Rmd | 2 - inst/doc/examples.html | 65 +++++++++++++++++++++++++++++---------------- man/aligned_labels_dp.Rd |only man/isoreg_dp.Rd |only man/qp.labels.Rd | 2 - src |only tests/testthat/test-CRAN.R |only vignettes/examples.Rmd | 2 - 17 files changed, 89 insertions(+), 82 deletions(-)
Title: 'Lifebit' Platform 'API' Client
Description: Interacts with the 'Lifebit' Platform Cohort Browser 'API'
<https://cloudos.lifebit.ai>. Enables schema discovery, table exploration,
and read-only 'SQL' query execution with policy-aware behavior and team-based
access control for cohort data analysis. Requires bastion-enabled workspaces
for 'API' access.
Author: Leila Mansouri [aut, cre]
Maintainer: Leila Mansouri <leila.mansouri@lifebit.ai>
Diff between cloudosR versions 0.2.0 dated 2026-06-01 and 0.2.4 dated 2026-08-28
cloudosR-0.2.0/cloudosR/man/build_query_string.Rd |only cloudosR-0.2.0/cloudosR/man/http_request_with_retry.Rd |only cloudosR-0.2.0/cloudosR/man/paginate_results.Rd |only cloudosR-0.2.4/cloudosR/DESCRIPTION | 11 cloudosR-0.2.4/cloudosR/MD5 | 55 cloudosR-0.2.4/cloudosR/NAMESPACE | 3 cloudosR-0.2.4/cloudosR/NEWS.md | 59 cloudosR-0.2.4/cloudosR/R/config.R | 3 cloudosR-0.2.4/cloudosR/R/http.R | 329 +-- cloudosR-0.2.4/cloudosR/R/query.R | 741 ++++--- cloudosR-0.2.4/cloudosR/R/utils.R | 161 + cloudosR-0.2.4/cloudosR/inst/WORDLIST | 6 cloudosR-0.2.4/cloudosR/inst/doc/getting-started.R | 27 cloudosR-0.2.4/cloudosR/inst/doc/getting-started.Rmd | 33 cloudosR-0.2.4/cloudosR/inst/doc/getting-started.html | 151 - cloudosR-0.2.4/cloudosR/man/cloudos.query.Rd | 21 cloudosR-0.2.4/cloudosR/man/cloudos.query_count.Rd |only cloudosR-0.2.4/cloudosR/man/cloudos.query_count_results.Rd |only cloudosR-0.2.4/cloudosR/man/cloudos.query_results.Rd | 15 cloudosR-0.2.4/cloudosR/man/cloudos.query_submit_async.Rd | 11 cloudosR-0.2.4/cloudosR/man/cloudos.query_submit_count_async.Rd |only cloudosR-0.2.4/cloudosR/man/error_body_text.Rd |only cloudosR-0.2.4/cloudosR/man/extract_error_message.Rd |only cloudosR-0.2.4/cloudosR/man/handle_api_error.Rd | 2 cloudosR-0.2.4/cloudosR/man/http_get_parallel.Rd |only cloudosR-0.2.4/cloudosR/man/parse_json_response.Rd | 5 cloudosR-0.2.4/cloudosR/man/process_response.Rd |only cloudosR-0.2.4/cloudosR/man/resolve_max_parallel.Rd |only cloudosR-0.2.4/cloudosR/man/results_response_to_df.Rd |only cloudosR-0.2.4/cloudosR/man/truncate_error_text.Rd |only cloudosR-0.2.4/cloudosR/tests/testthat/helper-config.R |only cloudosR-0.2.4/cloudosR/tests/testthat/test-config.R | 83 cloudosR-0.2.4/cloudosR/tests/testthat/test-http.R |only cloudosR-0.2.4/cloudosR/tests/testthat/test-query.R | 936 +++++++++- cloudosR-0.2.4/cloudosR/tests/testthat/test-utils.R | 43 cloudosR-0.2.4/cloudosR/vignettes/getting-started.Rmd | 33 36 files changed, 1888 insertions(+), 840 deletions(-)
Title: Climate Exposure Relative to a Species' Climatic Niche
Description: Quantifies projected climatic change relative to the climatic
niche represented by a species' current distribution. A weighted current
reference defines the niche centre and empirical radial boundary. Present
and projected conditions at each location give local climatic displacement,
signed change in niche distance, a derived non-radial reconfiguration term,
and exceedance beyond the niche boundary. Occurrence records, range maps,
and binary or continuous species distribution model outputs can define
reference weights. Matrix and spatial workflows return location-level
values, weighted summaries, maps and climatic-variable contributions.
Author: Bohao He [aut, cre]
Maintainer: Bohao He <bohao.he@polimi.it>
Diff between climniche versions 0.0.1 dated 2026-05-29 and 0.3.8 dated 2026-08-28
climniche-0.0.1/climniche/R/diagram.R |only climniche-0.0.1/climniche/inst/extdata/mediterranean_anchovy/anchovy_clean_obis_records.csv |only climniche-0.0.1/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_classes.csv |only climniche-0.0.1/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_summary.csv |only climniche-0.0.1/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_top_variables.csv |only climniche-0.0.1/climniche/man/climniche_diagram_data.Rd |only climniche-0.0.1/climniche/man/climniche_showcase_data.Rd |only climniche-0.0.1/climniche/man/plot_climniche_class_summary.Rd |only climniche-0.0.1/climniche/man/plot_climniche_classes.Rd |only climniche-0.0.1/climniche/man/plot_climniche_diagram.Rd |only climniche-0.0.1/climniche/man/plot_climniche_showcase.Rd |only climniche-0.0.1/climniche/man/plot_variable_contribution.Rd |only climniche-0.0.1/climniche/vignettes/figures/anchovy-climniche-diagram.png |only climniche-0.0.1/climniche/vignettes/figures/anchovy-climniche-showcase.png |only climniche-0.3.8/climniche/DESCRIPTION | 28 climniche-0.3.8/climniche/LICENSE |only climniche-0.3.8/climniche/MD5 | 175 +- climniche-0.3.8/climniche/NAMESPACE | 70 climniche-0.3.8/climniche/NEWS.md | 162 + climniche-0.3.8/climniche/R/aliases.R | 438 +++-- climniche-0.3.8/climniche/R/classify.R | 139 - climniche-0.3.8/climniche/R/contribution_map.R |only climniche-0.3.8/climniche/R/core.R | 303 ++- climniche-0.3.8/climniche/R/departure.R |only climniche-0.3.8/climniche/R/dynamic_plot.R |only climniche-0.3.8/climniche/R/dynamic_report.R |only climniche-0.3.8/climniche/R/metric.R | 141 + climniche-0.3.8/climniche/R/priority.R |only climniche-0.3.8/climniche/R/range.R |only climniche-0.3.8/climniche/R/raster_workflow.R | 241 +- climniche-0.3.8/climniche/R/reference.R |only climniche-0.3.8/climniche/R/report.R | 495 ++++- climniche-0.3.8/climniche/R/series_fit.R |only climniche-0.3.8/climniche/R/showcase.R | 501 +++-- climniche-0.3.8/climniche/R/simulate.R | 31 climniche-0.3.8/climniche/R/summary_plot.R | 248 ++ climniche-0.3.8/climniche/R/utils.R | 647 +++++++ climniche-0.3.8/climniche/R/visualise.R | 605 ++++--- climniche-0.3.8/climniche/R/zzz.R | 27 climniche-0.3.8/climniche/README.md | 215 ++ climniche-0.3.8/climniche/build/partial.rdb |only climniche-0.3.8/climniche/build/vignette.rds |binary climniche-0.3.8/climniche/inst/COPYRIGHTS |only climniche-0.3.8/climniche/inst/doc/climniche-contributions.R |only climniche-0.3.8/climniche/inst/doc/climniche-contributions.Rmd |only climniche-0.3.8/climniche/inst/doc/climniche-contributions.html |only climniche-0.3.8/climniche/inst/doc/climniche-examples.R | 133 + climniche-0.3.8/climniche/inst/doc/climniche-examples.Rmd | 279 ++- climniche-0.3.8/climniche/inst/doc/climniche-examples.html | 261 +-- climniche-0.3.8/climniche/inst/doc/climniche-method.R |only climniche-0.3.8/climniche/inst/doc/climniche-method.Rmd |only climniche-0.3.8/climniche/inst/doc/climniche-method.html |only climniche-0.3.8/climniche/inst/doc/climniche-priority.R |only climniche-0.3.8/climniche/inst/doc/climniche-priority.Rmd |only climniche-0.3.8/climniche/inst/doc/climniche-priority.html |only climniche-0.3.8/climniche/inst/doc/climniche-through-time.R |only climniche-0.3.8/climniche/inst/doc/climniche-through-time.Rmd |only climniche-0.3.8/climniche/inst/doc/climniche-through-time.html |only climniche-0.3.8/climniche/inst/examples/climniche-basic.R | 14 climniche-0.3.8/climniche/inst/examples/climniche-contributions.R |only climniche-0.3.8/climniche/inst/examples/climniche-priority.R |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_biooracle_layer_manifest.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_descriptor_proportions.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_dominant_contributions.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_fit_settings.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_input_sample.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_metric_summary.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_priority_summary.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_sensitivity_weights.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_time_change_rate.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_time_departure_summary.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_time_range_summary.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_climniche_variable_contributions.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_predictor_correlation_vif_screen.csv |only climniche-0.3.8/climniche/inst/extdata/mediterranean_anchovy/anchovy_presence_background_sdm_settings.csv |only climniche-0.3.8/climniche/man/boundary_exceedance.Rd | 15 climniche-0.3.8/climniche/man/climniche_change_rate.Rd |only climniche-0.3.8/climniche/man/climniche_departure.Rd |only climniche-0.3.8/climniche/man/climniche_dominant_contribution.Rd |only climniche-0.3.8/climniche/man/climniche_model_agreement.Rd |only climniche-0.3.8/climniche/man/climniche_priority.Rd |only climniche-0.3.8/climniche/man/climniche_range_summary.Rd |only climniche-0.3.8/climniche/man/climniche_report.Rd | 4 climniche-0.3.8/climniche/man/climniche_series_report.Rd |only climniche-0.3.8/climniche/man/climniche_series_table.Rd |only climniche-0.3.8/climniche/man/climniche_summary.Rd | 7 climniche-0.3.8/climniche/man/climniche_summary_figure_data.Rd |only climniche-0.3.8/climniche/man/climniche_table.Rd | 7 climniche-0.3.8/climniche/man/figures/niche-climate-exposure.pdf |only climniche-0.3.8/climniche/man/figures/niche-climate-exposure.svg | 4 climniche-0.3.8/climniche/man/fit_climniche.Rd | 181 +- climniche-0.3.8/climniche/man/fit_climniche_raster.Rd | 97 + climniche-0.3.8/climniche/man/fit_climniche_reference.Rd |only climniche-0.3.8/climniche/man/fit_climniche_series.Rd |only climniche-0.3.8/climniche/man/fit_climniche_terra.Rd | 96 + climniche-0.3.8/climniche/man/niche_metric.Rd | 34 climniche-0.3.8/climniche/man/niche_percentile.Rd | 7 climniche-0.3.8/climniche/man/niche_potential.Rd | 11 climniche-0.3.8/climniche/man/niche_radius.Rd | 4 climniche-0.3.8/climniche/man/plot.climniche_fit.Rd |only climniche-0.3.8/climniche/man/plot_climniche_departure_map.Rd |only climniche-0.3.8/climniche/man/plot_climniche_distribution.Rd | 16 climniche-0.3.8/climniche/man/plot_climniche_dominant_contribution.Rd |only climniche-0.3.8/climniche/man/plot_climniche_exposure.Rd | 10 climniche-0.3.8/climniche/man/plot_climniche_map.Rd | 71 climniche-0.3.8/climniche/man/plot_climniche_maps.Rd |only climniche-0.3.8/climniche/man/plot_climniche_priority.Rd |only climniche-0.3.8/climniche/man/plot_climniche_report.Rd | 4 climniche-0.3.8/climniche/man/plot_climniche_summary_figure.Rd |only climniche-0.3.8/climniche/man/plot_climniche_time.Rd |only climniche-0.3.8/climniche/man/plot_climniche_variable_contribution.Rd | 4 climniche-0.3.8/climniche/man/print.climniche_summary.Rd |only climniche-0.3.8/climniche/man/project_climniche.Rd |only climniche-0.3.8/climniche/man/simulate_climniche.Rd | 13 climniche-0.3.8/climniche/man/summary.climniche_fit.Rd |only climniche-0.3.8/climniche/man/variable_contribution.Rd | 24 climniche-0.3.8/climniche/man/write_climniche_series_report.Rd |only climniche-0.3.8/climniche/tests/test-basic.R | 861 ++++++++-- climniche-0.3.8/climniche/tests/test-contribution.R |only climniche-0.3.8/climniche/tests/test-dynamic.R |only climniche-0.3.8/climniche/tests/test-priority.R |only climniche-0.3.8/climniche/tests/test-validation.R |only climniche-0.3.8/climniche/vignettes/climniche-contributions.Rmd |only climniche-0.3.8/climniche/vignettes/climniche-examples.Rmd | 279 ++- climniche-0.3.8/climniche/vignettes/climniche-method.Rmd |only climniche-0.3.8/climniche/vignettes/climniche-priority.Rmd |only climniche-0.3.8/climniche/vignettes/climniche-through-time.Rmd |only climniche-0.3.8/climniche/vignettes/figures/anchovy-climniche-contributions.png |only climniche-0.3.8/climniche/vignettes/figures/anchovy-climniche-priority.png |only climniche-0.3.8/climniche/vignettes/figures/anchovy-climniche-summary.png |only climniche-0.3.8/climniche/vignettes/figures/anchovy-climniche-through-time.png |only climniche-0.3.8/climniche/vignettes/figures/anchovy-climniche-time-maps.png |only climniche-0.3.8/climniche/vignettes/figures/anchovy-mediterranean-maps.png |binary 133 files changed, 5353 insertions(+), 1549 deletions(-)
Title: Fast, Weighted ROC Curves
Description: Fast computation of
Receiver Operating Characteristic (ROC) curves
and Area Under the Curve (AUC)
for weighted binary classification problems
(weights are example-specific cost values).
Author: Toby Dylan Hocking [cre, aut]
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between WeightedROC versions 2020.1.31 dated 2020-02-01 and 2026.8.27 dated 2026-08-28
DESCRIPTION | 14 + MD5 | 30 +-- NAMESPACE | 8 NEWS | 128 +++++++------- R/AUC.R | 130 +++++++------- R/ROC.R | 376 +++++++++++++++++++++---------------------- build/vignette.rds |binary inst/doc/Definition.R | 42 ++-- inst/doc/Definition.Rnw | 286 ++++++++++++++++---------------- inst/doc/Definition.pdf |binary man/WeightedAUC.Rd | 122 ++++++------- man/WeightedROC.Rd | 288 ++++++++++++++++---------------- tests/testthat.R | 4 tests/testthat/test-auc.R | 332 ++++++++++++++++++------------------- tests/testthat/test-errors.R | 94 +++++----- vignettes/Definition.Rnw | 286 ++++++++++++++++---------------- 16 files changed, 1074 insertions(+), 1066 deletions(-)
Title: Make Data Based on Different Geographies Comparable
Description: Several functions to allow comparisons of data across different geographies, in particular for Canadian census data from different censuses.
Author: Jens von Bergmann [aut, cre]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between tongfen versions 0.3.7 dated 2026-06-05 and 0.3.8 dated 2026-08-28
DESCRIPTION | 6 MD5 | 64 ++-- NAMESPACE | 1 NEWS.md | 63 ++++ R/helpers.R | 262 +++++++++++------ R/tongfen.R | 82 +++-- R/tongfen_ca.R | 104 ++++-- R/tongfen_ca_deprecated.R | 16 - R/tongfen_ca_estimate.R | 4 R/tongfen_estimate.R | 29 - R/tongfen_us.R | 373 +++++++++++++++++++++---- README.md | 4 build/stage23.rdb |binary build/vignette.rds |binary inst/doc/tongfen.html | 6 inst/doc/tongfen_ca.R | 4 inst/doc/tongfen_ca.Rmd | 4 inst/doc/tongfen_ca.html | 12 inst/doc/tongfen_us.R | 21 + inst/doc/tongfen_us.Rmd | 34 ++ inst/doc/tongfen_us.html | 49 +++ man/check_tongfen_areas.Rd | 4 man/get_tongfen_ca_census.Rd | 11 man/get_tongfen_correspondence_ca_census.Rd | 12 man/get_tongfen_correspondence_us_census.Rd |only man/get_tongfen_us_census.Rd | 17 + man/tongfen_aggregate.Rd | 11 tests/testthat/test-aggregate.R | 81 +++++ tests/testthat/test-correspondence-estimate.R |only tests/testthat/test-estimate.R |only tests/testthat/test-helpers.R | 138 +++++++++ tests/testthat/test-proportional-reaggregate.R | 32 ++ tests/testthat/test-us-correspondence.R |only vignettes/tongfen_ca.Rmd | 4 vignettes/tongfen_us.Rmd | 34 ++ 35 files changed, 1167 insertions(+), 315 deletions(-)
Title: Latent Dirichlet Allocation Using 'tidyverse' Conventions
Description: Implements an algorithm for Latent Dirichlet
Allocation (LDA), Blei et al. (2003) <https://www.jmlr.org/papers/volume3/blei03a/blei03a.pdf>,
using style conventions from the 'tidyverse',
Wickham et al. (2019)<doi:10.21105/joss.01686>,
and 'tidymodels', Kuhn et al.<https://tidymodels.github.io/model-implementation-principles/>.
Fitting is done via 'warpLDA', a Metropolis-Hastings sampler,
Chen et al. (2016) <doi:10.48550/arXiv.1510.08628>.
Also implements several novel features for LDA such as guided models and
transfer learning.
Author: Tommy Jones [aut, cre] ,
Brendan Knapp [ctb] ,
Barum Park [ctb]
Maintainer: Tommy Jones <jones.thos.w@gmail.com>
Diff between tidylda versions 0.0.7 dated 2025-11-14 and 0.1.0 dated 2026-08-28
tidylda-0.0.7/tidylda/inst/include |only tidylda-0.0.7/tidylda/man/create_lexicon.Rd |only tidylda-0.0.7/tidylda/man/fit_lda_c.Rd |only tidylda-0.0.7/tidylda/man/recover_counts_from_probs.Rd |only tidylda-0.0.7/tidylda/src/lda_gibbs2.cpp |only tidylda-0.0.7/tidylda/src/parallel_gibbs_utils.h |only tidylda-0.0.7/tidylda/src/sample.h |only tidylda-0.0.7/tidylda/src/sample_int.h |only tidylda-0.1.0/tidylda/DESCRIPTION | 13 tidylda-0.1.0/tidylda/MD5 | 111 - tidylda-0.1.0/tidylda/NEWS.md | 175 ++ tidylda-0.1.0/tidylda/R/RcppExports.R | 123 - tidylda-0.1.0/tidylda/R/posterior.tidylda.R | 90 - tidylda-0.1.0/tidylda/R/predict.tidylda.R | 128 + tidylda-0.1.0/tidylda/R/refit.tidylda.R | 89 - tidylda-0.1.0/tidylda/R/tidy-methods.R | 48 tidylda-0.1.0/tidylda/R/tidylda-fit-methods.R | 216 ++- tidylda-0.1.0/tidylda/R/tidylda-package.R | 17 tidylda-0.1.0/tidylda/R/utils.R | 699 ++++++---- tidylda-0.1.0/tidylda/README.md | 201 +- tidylda-0.1.0/tidylda/build/partial.rdb |only tidylda-0.1.0/tidylda/build/vignette.rds |binary tidylda-0.1.0/tidylda/inst/WORDLIST | 14 tidylda-0.1.0/tidylda/inst/doc/probabilistic-coherence.html | 4 tidylda-0.1.0/tidylda/inst/doc/tLDA.Rmd | 6 tidylda-0.1.0/tidylda/inst/doc/tLDA.html | 23 tidylda-0.1.0/tidylda/inst/doc/tidylda-intro.R | 11 tidylda-0.1.0/tidylda/inst/doc/tidylda-intro.Rmd | 29 tidylda-0.1.0/tidylda/inst/doc/tidylda-intro.html | 238 +-- tidylda-0.1.0/tidylda/man/check_result_size.Rd |only tidylda-0.1.0/tidylda/man/counts_cv.Rd |only tidylda-0.1.0/tidylda/man/eta_matrix.Rd |only tidylda-0.1.0/tidylda/man/eta_row_sums.Rd |only tidylda-0.1.0/tidylda/man/figures/README-example-1.png |binary tidylda-0.1.0/tidylda/man/figures/README-example-2.png |binary tidylda-0.1.0/tidylda/man/figures/README-example-3.png |binary tidylda-0.1.0/tidylda/man/figures/README-example-4.png |binary tidylda-0.1.0/tidylda/man/fit_lda_warp.Rd |only tidylda-0.1.0/tidylda/man/format_alpha.Rd | 6 tidylda-0.1.0/tidylda/man/format_eta.Rd | 6 tidylda-0.1.0/tidylda/man/glance.tidylda.Rd | 4 tidylda-0.1.0/tidylda/man/initialize_topic_counts.Rd | 57 tidylda-0.1.0/tidylda/man/new_tidylda.Rd | 50 tidylda-0.1.0/tidylda/man/pad_vocabulary.Rd |only tidylda-0.1.0/tidylda/man/posterior.Rd | 3 tidylda-0.1.0/tidylda/man/predict.tidylda.Rd | 31 tidylda-0.1.0/tidylda/man/reexports.Rd | 2 tidylda-0.1.0/tidylda/man/refit.tidylda.Rd | 21 tidylda-0.1.0/tidylda/man/session_memory_limit.Rd |only tidylda-0.1.0/tidylda/man/tidylda-package.Rd | 24 tidylda-0.1.0/tidylda/man/tidylda.Rd | 114 + tidylda-0.1.0/tidylda/man/tidylda_bridge.Rd | 19 tidylda-0.1.0/tidylda/src/RcppExports.cpp | 108 - tidylda-0.1.0/tidylda/src/matrix_conversions.h | 8 tidylda-0.1.0/tidylda/src/warp_alias.h |only tidylda-0.1.0/tidylda/src/warp_corpus.h |only tidylda-0.1.0/tidylda/src/warp_eta.h |only tidylda-0.1.0/tidylda/src/warp_init_sample.h |only tidylda-0.1.0/tidylda/src/warp_lda.cpp |only tidylda-0.1.0/tidylda/src/warp_rng.h |only tidylda-0.1.0/tidylda/tests/testthat/test-counts-contract.R |only tidylda-0.1.0/tidylda/tests/testthat/test-cpp_funs.R | 133 + tidylda-0.1.0/tidylda/tests/testthat/test-predict.tidylda.R | 32 tidylda-0.1.0/tidylda/tests/testthat/test-tidylda-fit-methods.R | 60 tidylda-0.1.0/tidylda/tests/testthat/test-utils.R | 73 + tidylda-0.1.0/tidylda/tests/testthat/test-warp-engine.R |only tidylda-0.1.0/tidylda/vignettes/tLDA.Rmd | 6 tidylda-0.1.0/tidylda/vignettes/tidylda-intro.Rmd | 29 68 files changed, 1895 insertions(+), 1126 deletions(-)
Title: Stability Assessment of Statistical Learning Methods
Description: Graphical and computational methods that can be used to assess the
stability of results from supervised statistical learning.
Author: Michel Philipp [aut],
Carolin Strobl [aut] ,
Achim Zeileis [aut, cre] ,
Thomas Rusch [aut] ,
Kurt Hornik [aut] ,
Lennart Schneider [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between stablelearner versions 0.1-8 dated 2026-07-30 and 0.1-9 dated 2026-08-28
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 10 +++++++++- NEWS.md | 8 ++++++++ R/stabletree-coercion.R | 2 +- R/stabletree.R | 2 +- inst/doc/forests.html | 4 ++-- man/stabletree-coercion.Rd | 2 +- 8 files changed, 33 insertions(+), 17 deletions(-)
Title: Humane Interface to Amazon Web Services
Description: An opinionated interface to Amazon Web Services <https://aws.amazon.com>,
with functions for interacting with 'IAM' (Identity and Access Management),
'S3' (Simple Storage Service), 'RDS' (Relational Data Service), Redshift, and Billing.
Lower level functions ('aws_' prefix) are for do it yourself workflows, while
higher level functions ('six_' prefix) automate common tasks.
Author: Sean Kross [aut],
Scott Chamberlain [aut, cre] ,
Fred Hutchinson Cancer Center [fnd]
Maintainer: Scott Chamberlain <sachamber@fredhutch.org>
Diff between sixtyfour versions 0.2.0 dated 2025-03-31 and 0.2.4 dated 2026-08-28
DESCRIPTION | 28 ++- LICENSE | 2 MD5 | 242 +++++++++++++++++----------------- NAMESPACE | 158 ++++++++++++---------- NEWS.md | 4 R/clients.R | 17 ++ R/configure.R | 3 R/database-misc.R | 4 R/database-rds.R | 13 + R/database-redshift.R | 7 R/internal.R | 2 R/policies.R | 8 - R/s3.R | 9 - R/secrets_manager.R | 16 +- R/sixtyfour-package.R | 1 R/users.R | 4 R/utils.R | 4 R/vpc_security_groups.R | 8 - R/wait.R | 4 README.md | 4 build/vignette.rds |binary inst/doc/contributing.Rmd | 6 inst/doc/contributing.html | 10 - man/as_policy_arn.Rd | 26 +-- man/aws_billing.Rd | 6 man/aws_billing_raw.Rd | 6 man/aws_bucket_create.Rd | 22 +-- man/aws_bucket_delete.Rd | 22 +-- man/aws_bucket_download.Rd | 24 +-- man/aws_bucket_exists.Rd | 22 +-- man/aws_bucket_list_objects.Rd | 22 +-- man/aws_bucket_tree.Rd | 22 +-- man/aws_bucket_upload.Rd | 24 +-- man/aws_buckets.Rd | 22 +-- man/aws_db_cluster_status.Rd | 14 - man/aws_db_instance_status.Rd | 14 - man/aws_db_rds_con.Rd | 14 - man/aws_db_rds_create.Rd | 14 - man/aws_db_rds_list.Rd | 16 +- man/aws_db_redshift_con.Rd | 16 +- man/aws_db_redshift_create.Rd | 14 - man/aws_file_attr.Rd | 20 +- man/aws_file_copy.Rd | 18 +- man/aws_file_delete.Rd | 18 +- man/aws_file_download.Rd | 20 +- man/aws_file_exists.Rd | 18 +- man/aws_file_rename.Rd | 18 +- man/aws_file_upload.Rd | 18 +- man/aws_group.Rd | 14 - man/aws_group_create.Rd | 14 - man/aws_group_delete.Rd | 14 - man/aws_group_exists.Rd | 14 - man/aws_groups.Rd | 14 - man/aws_policies.Rd | 28 +-- man/aws_policy.Rd | 26 +-- man/aws_policy_attach.Rd | 26 +-- man/aws_policy_create.Rd | 26 +-- man/aws_policy_delete.Rd | 26 +-- man/aws_policy_delete_version.Rd | 26 +-- man/aws_policy_detach.Rd | 26 +-- man/aws_policy_document_create.Rd | 2 man/aws_policy_exists.Rd | 26 +-- man/aws_policy_list_entities.Rd | 26 +-- man/aws_policy_list_versions.Rd | 26 +-- man/aws_policy_update.Rd | 26 +-- man/aws_role.Rd | 12 - man/aws_role_create.Rd | 12 - man/aws_role_delete.Rd | 12 - man/aws_role_exists.Rd | 12 - man/aws_roles.Rd | 12 - man/aws_secrets_all.Rd | 2 man/aws_secrets_create.Rd | 2 man/aws_secrets_delete.Rd | 2 man/aws_secrets_get.Rd | 2 man/aws_secrets_list.Rd | 2 man/aws_secrets_pwd.Rd | 2 man/aws_secrets_rotate.Rd | 2 man/aws_secrets_update.Rd | 2 man/aws_user.Rd | 24 +-- man/aws_user_access_key.Rd | 22 +-- man/aws_user_access_key_delete.Rd | 22 +-- man/aws_user_add_to_group.Rd | 24 +-- man/aws_user_create.Rd | 24 +-- man/aws_user_current.Rd | 22 +-- man/aws_user_delete.Rd | 24 +-- man/aws_user_exists.Rd | 24 +-- man/aws_users.Rd | 24 +-- man/aws_vpc_sec_group_rules_mod.Rd | 14 - man/aws_vpc_security_group.Rd | 12 - man/aws_vpc_security_group_create.Rd | 12 - man/aws_vpc_security_group_ingress.Rd | 12 - man/aws_vpc_security_groups.Rd | 14 - man/aws_vpc_sg_with_ingress.Rd | 12 - man/aws_vpcs.Rd | 2 man/con_iam.Rd | 2 man/con_s3fs.Rd | 2 man/figure_out_policy_arn.Rd | 2 man/reexports.Rd | 4 man/six_admin_setup.Rd | 12 - man/six_bucket_add_user.Rd | 2 man/six_bucket_change_user.Rd | 2 man/six_bucket_delete.Rd | 34 ++-- man/six_bucket_permissions.Rd | 2 man/six_bucket_remove_user.Rd | 2 man/six_bucket_upload.Rd | 34 ++-- man/six_file_upload.Rd | 34 ++-- man/six_group_delete.Rd | 14 - man/six_user_create.Rd | 36 ++--- man/six_user_creds.Rd | 2 man/six_user_delete.Rd | 36 ++--- man/sixtyfour-package.Rd | 3 tests/testthat/helper-vcr.R | 1 tests/testthat/test-buckets.R | 12 + tests/testthat/test-db-rds.R | 2 tests/testthat/test-db-redshift.R | 2 tests/testthat/test-files.R | 28 ++- tests/testthat/test-policies.R | 9 - tests/testthat/test-s3.R | 21 -- tests/testthat/test-users.R | 3 tests/testthat/test-utils.R | 16 +- tests/testthat/test-vpc.R | 8 - vignettes/contributing.Rmd | 6 122 files changed, 1083 insertions(+), 976 deletions(-)
Title: Sequential Trial Emulation
Description: Implementation of sequential trial emulation for the analysis of observational databases.
The 'SEQTaRget' software accommodates time-varying treatments and confounders, as well as binary
and failure time outcomes. 'SEQTaRget' allows to compare both static and dynamic strategies,
can be used to estimate observational analogs of intention-to-treat
and per-protocol effects, and can adjust for potential selection bias
induced by losses-to-follow-up. (Paper to come).
Author: Ryan O'Dea [aut, cre] ,
Tom Palmer [aut] ,
Paul Madley-Dowd [aut] ,
Alejandro Szmulewicz [aut] ,
Miguel A. Hernan [aut] ,
The President and Fellows of Harvard College [cph]
Maintainer: Ryan O'Dea <ryan.odea@psi.ch>
Diff between SEQTaRget versions 1.4.3 dated 2026-06-23 and 1.4.4 dated 2026-08-28
DESCRIPTION | 28 ++-- MD5 | 88 ++++++++----- NAMESPACE | 63 +++++---- NEWS.md | 6 R/SEQexpand.R | 10 + R/SEQopts.R | 27 +++- R/SEQuential.R | 94 ++++++++++++-- R/class_definitions.R | 16 ++ R/class_methods.R | 130 +++++++++++++++++--- R/class_setters.R | 48 ++++++- R/internal_analysis.R | 68 ++++++++-- R/internal_endoffup.R |only R/internal_glmHelpers.R | 19 ++ R/internal_misc.R | 10 + R/internal_weights.R | 2 README.md | 2 build/vignette.rds |binary inst/doc/ITT.R | 5 inst/doc/ITT.Rmd | 5 inst/doc/ITT.html | 191 +++++++++++++++--------------- inst/doc/SEQuential.R | 1 inst/doc/SEQuential.Rmd | 1 inst/doc/SEQuential.html | 177 +++++++++++++-------------- inst/doc/doseresponse.R | 5 inst/doc/doseresponse.Rmd | 5 inst/doc/doseresponse.html | 191 +++++++++++++++--------------- inst/doc/endoffollowup.R |only inst/doc/endoffollowup.Rmd |only inst/doc/endoffollowup.html |only inst/doc/seqopts.Rmd | 4 inst/doc/seqopts.html | 35 +++++ man/SEQTaRget-package.Rd | 4 man/SEQopts.Rd | 16 ++ man/SEQoutput-class.Rd | 6 man/SEQuential.Rd | 22 +++ man/cached_cols.Rd |only man/clean_models.Rd |only man/create.endoffup.Rd |only man/diagnostics.Rd | 16 ++ man/end_of_fup.Rd |only man/endoffup.counts.Rd |only man/endoffup.estimate.Rd |only man/endoffup.measure.Rd |only man/endoffup.summary.Rd |only man/prepare.output.Rd | 4 man/select_cached_level.Rd |only tests/testthat/test_armspecific_weights.R |only tests/testthat/test_end_of_fup.R |only vignettes/ITT.Rmd | 5 vignettes/SEQuential.Rmd | 1 vignettes/doseresponse.Rmd | 5 vignettes/endoffollowup.Rmd |only vignettes/seqopts.Rmd | 4 53 files changed, 891 insertions(+), 423 deletions(-)
Title: Wrapper for 'run_example()'
Description: Captures errors or missing examples encountered when iteratively running 'run_examplez()', and archives them.
Author: Barry Zeeberg [aut, cre]
Maintainer: Barry Zeeberg <barryz2013@gmail.com>
Diff between runExamplesWrapper versions 1.1 dated 2026-01-16 and 2.0 dated 2026-08-28
runExamplesWrapper-1.1/runExamplesWrapper/R/runExamplesWrapper.R |only runExamplesWrapper-1.1/runExamplesWrapper/man/RunExamples.Rd |only runExamplesWrapper-1.1/runExamplesWrapper/man/balanceCurly.Rd |only runExamplesWrapper-1.1/runExamplesWrapper/man/parseRunExamples.Rd |only runExamplesWrapper-1.1/runExamplesWrapper/man/retrieveExamplesFromMan.Rd |only runExamplesWrapper-1.1/runExamplesWrapper/man/retrieveMan.Rd |only runExamplesWrapper-1.1/runExamplesWrapper/man/startExample.Rd |only runExamplesWrapper-2.0/runExamplesWrapper/DESCRIPTION | 16 +-- runExamplesWrapper-2.0/runExamplesWrapper/MD5 | 24 ++--- runExamplesWrapper-2.0/runExamplesWrapper/NAMESPACE | 10 -- runExamplesWrapper-2.0/runExamplesWrapper/R/run_example.R |only runExamplesWrapper-2.0/runExamplesWrapper/build/vignette.rds |binary runExamplesWrapper-2.0/runExamplesWrapper/inst/doc/runExamplesWrapper.Rmd | 23 ++--- runExamplesWrapper-2.0/runExamplesWrapper/inst/doc/runExamplesWrapper.html | 45 ++++------ runExamplesWrapper-2.0/runExamplesWrapper/man/runExamplesWrapper.Rd |only runExamplesWrapper-2.0/runExamplesWrapper/man/run_examplez.Rd |only runExamplesWrapper-2.0/runExamplesWrapper/vignettes/Figure1.jpg |binary runExamplesWrapper-2.0/runExamplesWrapper/vignettes/runExamplesWrapper.Rmd | 23 ++--- 18 files changed, 58 insertions(+), 83 deletions(-)
More information about runExamplesWrapper at CRAN
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Title: Hypothesis Tests for Quantiles and Quantile-Based Measures
Description: Functions to conduct hypothesis tests and derive confidence intervals
for quantiles, linear combinations of quantiles,
ratios of dependent linear combinations and differences
and ratios of all of the above for comparisons between independent samples.
Additionally, quantile-based measures of inequality are also considered.
Author: Shenal Dedduwakumara [aut, cre],
Luke Prendergast [aut],
Robert Staudte [aut]
Maintainer: Shenal Dedduwakumara <shenal.dedduwakumara@adelaide.edu.au>
Diff between rquest versions 1.0.5 dated 2025-06-11 and 1.1.0 dated 2026-08-28
rquest-1.0.5/rquest/R/R.R |only rquest-1.0.5/rquest/R/qor.ln.R |only rquest-1.1.0/rquest/DESCRIPTION | 8 rquest-1.1.0/rquest/MD5 | 43 - rquest-1.1.0/rquest/NAMESPACE | 9 rquest-1.1.0/rquest/NEWS.md | 20 rquest-1.1.0/rquest/R/get.coefs.R |only rquest-1.1.0/rquest/R/q.test.R | 44 - rquest-1.1.0/rquest/R/qcov.R | 98 +-- rquest-1.1.0/rquest/R/qden.R |only rquest-1.1.0/rquest/R/qineq.R | 175 ++++- rquest-1.1.0/rquest/R/qor.R |only rquest-1.1.0/rquest/R/qrcov.R |only rquest-1.1.0/rquest/R/rcv.test.R |only rquest-1.1.0/rquest/R/rquest-package.R | 14 rquest-1.1.0/rquest/README.md | 488 +++++++++++++-- rquest-1.1.0/rquest/man/q.test.Rd | 18 rquest-1.1.0/rquest/man/qcov.Rd | 55 + rquest-1.1.0/rquest/man/qden.Rd |only rquest-1.1.0/rquest/man/qineq.Rd | 50 + rquest-1.1.0/rquest/man/qor.Rd |only rquest-1.1.0/rquest/man/qrcov.Rd |only rquest-1.1.0/rquest/man/rcv.test.Rd |only rquest-1.1.0/rquest/tests/testthat/test-q.test.R | 643 +++++++++++++++++---- rquest-1.1.0/rquest/tests/testthat/test-qcov.R | 111 +++ rquest-1.1.0/rquest/tests/testthat/test-qden.R |only rquest-1.1.0/rquest/tests/testthat/test-qineq.R | 203 ++++++ rquest-1.1.0/rquest/tests/testthat/test-qor.R |only rquest-1.1.0/rquest/tests/testthat/test-qrcov.R |only rquest-1.1.0/rquest/tests/testthat/test-rcv.test.R |only 30 files changed, 1591 insertions(+), 388 deletions(-)
Title: Random Hazard Forests
Description: Random Hazard Forests (RHF) extend Random Survival
Forests (RSF) by directly estimating the hazard function and by
accommodating time-dependent covariates through counting-process
style inputs. The package fits tree ensembles for dynamic survival
prediction, returning hazard, cumulative hazard, integrated hazard,
and related performance summaries for training and test data. The
methods build on Random Survival Forests described by Ishwaran et
al. (2008) <doi:10.1214/08-AOAS169> and on nonparametric hazard
modeling with time-dependent covariates described by Lee et
al. (2021) <doi:10.1214/20-AOS2028>.
Author: Hemant Ishwaran [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestRHF versions 1.0.1 dated 2026-04-28 and 2.0.0 dated 2026-08-28
DESCRIPTION | 8 MD5 | 104 ++-- NAMESPACE | 2 NEWS.md | 11 R/auct.rhf.R | 506 ++++++++++++++++++++-- R/importance.rhf_plot.R | 885 +++++++++++++++++++++++++++++++++------- R/plot.rhf.R | 14 R/predict.rhf.R | 32 + R/predict.rhf.workhorse.R | 244 ++++++++++- R/print.rhf.R | 13 R/rhf.R | 12 R/rhf.workhorse.R | 197 ++++++++ R/tune.treesize.rhf.R | 369 ++++++++++++++-- R/utilities_additional.R | 497 ++++++++++++++++------ R/utilities_hazard_simulation.R | 637 +++++++++++++++++++--------- R/utilities_importance.R | 101 ++++ R/utilities_importance_plot.R | 740 +++++++++++++++++++++++++++------ R/utilities_lot.R | 20 R/utilities_tdc.R | 680 +++++++++++++++++++++++++++--- man/auct.rhf.Rd | 14 man/importance.rhf.Rd | 285 +++++++++--- man/plot.rhf.Rd | 6 man/predict.rhf.Rd | 59 ++ man/rhf.Rd | 219 ++++++--- man/tune.treesize.rhf.Rd | 56 ++ man/utilities_internal.Rd | 10 src/Makevars | 1 src/Makevars.win | 1 src/R_init_randomForestRHF.c | 9 src/entry.c | 55 ++ src/entry.h | 4 src/entryGeneric.c | 3 src/external.h | 21 src/internal.c | 21 src/medianLogStitchedHazard.c | 24 - src/processEnsemble.c | 345 ++++++++++++--- src/processEnsemble.h | 7 src/processEnsembleCOE.c |only src/processEnsembleCOE.h |only src/rhfMain.c | 130 +++++ src/sexpOutgoing.c | 14 src/sexpOutgoing.h | 24 - src/shared/stackForestObjects.c | 2 src/splitTDC.c | 42 - src/stackOutput.c | 112 ++++- src/stackOutputQQ.c | 103 ++++ src/stackOutputQQ.h | 19 src/survivalTDC.c | 163 +++++++ src/survivalTDC.h | 1 src/termOps.c | 33 + src/termOps.h | 2 src/terminal.h | 4 src/treeOps.c | 35 + src/weightedStitchedHazard.c | 26 - 54 files changed, 5662 insertions(+), 1260 deletions(-)
More information about randomForestRHF at CRAN
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Title: Proportional Apportionment
Description: Calculate seat apportionment for legislative bodies with
various methods. The algorithms include divisor or highest averages methods
(e.g. Jefferson, Webster or Adams), largest remainder methods and
biproportional apportionment.
Gaffke, N. & Pukelsheim, F. (2008) <doi:10.1016/j.mathsocsci.2008.01.004>
Oelbermann, K. F. (2016) <doi:10.1016/j.mathsocsci.2016.02.003>.
Author: Flavio Poletti [aut, cre, cph]
Maintainer: Flavio Poletti <flavio.poletti@hotmail.ch>
Diff between proporz versions 1.5.2 dated 2025-10-10 and 1.5.3 dated 2026-08-28
proporz-1.5.2/proporz/inst/bazi |only proporz-1.5.2/proporz/man/proporz_methods.Rd |only proporz-1.5.3/proporz/DESCRIPTION | 8 proporz-1.5.3/proporz/MD5 | 150 +-- proporz-1.5.3/proporz/NAMESPACE | 4 proporz-1.5.3/proporz/NEWS.md | 7 proporz-1.5.3/proporz/R/S3.R | 34 proporz-1.5.3/proporz/R/bazi.R |only proporz-1.5.3/proporz/R/biproportional-check.R | 103 +- proporz-1.5.3/proporz/R/biproportional-divisors.R | 8 proporz-1.5.3/proporz/R/biproportional-lower.R | 94 +- proporz-1.5.3/proporz/R/biproportional-upper.R | 49 - proporz-1.5.3/proporz/R/biproportional-wto.R | 17 proporz-1.5.3/proporz/R/biproportional.R | 49 - proporz-1.5.3/proporz/R/data.R | 9 proporz-1.5.3/proporz/R/divisor-check.R | 21 proporz-1.5.3/proporz/R/divisor_methods.R | 34 proporz-1.5.3/proporz/R/matrix.R | 9 proporz-1.5.3/proporz/R/proporz.R | 31 proporz-1.5.3/proporz/R/quorum.R | 116 +- proporz-1.5.3/proporz/R/quota_methods.R | 5 proporz-1.5.3/proporz/R/round.R | 20 proporz-1.5.3/proporz/R/shinyapp.R | 439 ++++++---- proporz-1.5.3/proporz/R/utils.R | 53 + proporz-1.5.3/proporz/README.md | 4 proporz-1.5.3/proporz/build/vignette.rds |binary proporz-1.5.3/proporz/inst/doc/apportionment_scenarios.R | 14 proporz-1.5.3/proporz/inst/doc/apportionment_scenarios.Rmd | 14 proporz-1.5.3/proporz/inst/doc/apportionment_scenarios.html | 25 proporz-1.5.3/proporz/inst/doc/modifying_biproporz.R | 3 proporz-1.5.3/proporz/inst/doc/modifying_biproporz.Rmd | 26 proporz-1.5.3/proporz/inst/doc/modifying_biproporz.html | 93 +- proporz-1.5.3/proporz/inst/run_additional_tests.R |only proporz-1.5.3/proporz/inst/test-bazi |only proporz-1.5.3/proporz/man/apply_quorum.Rd | 15 proporz-1.5.3/proporz/man/biproporz.Rd | 37 proporz-1.5.3/proporz/man/ceil_at.Rd | 8 proporz-1.5.3/proporz/man/district_winner_matrix.Rd | 5 proporz-1.5.3/proporz/man/divide_votes_matrix.Rd | 12 proporz-1.5.3/proporz/man/divisor_methods.Rd | 9 proporz-1.5.3/proporz/man/figures/shinyapp-example.gif |binary proporz-1.5.3/proporz/man/find_divisor.Rd | 15 proporz-1.5.3/proporz/man/find_matrix_divisors.Rd | 9 proporz-1.5.3/proporz/man/get_divisors.Rd | 6 proporz-1.5.3/proporz/man/highest_averages_method.Rd | 9 proporz-1.5.3/proporz/man/largest_remainder_method.Rd | 9 proporz-1.5.3/proporz/man/lower_apportionment.Rd | 6 proporz-1.5.3/proporz/man/pivot_to_matrix.Rd | 9 proporz-1.5.3/proporz/man/proporz.Rd | 9 proporz-1.5.3/proporz/man/pukelsheim.Rd | 19 proporz-1.5.3/proporz/man/quorum_functions.Rd | 22 proporz-1.5.3/proporz/man/reached_quorum_any_district.Rd | 4 proporz-1.5.3/proporz/man/reached_quorum_total.Rd | 4 proporz-1.5.3/proporz/man/reached_quorums.Rd | 21 proporz-1.5.3/proporz/man/read_bazi.Rd |only proporz-1.5.3/proporz/man/run_app.Rd | 11 proporz-1.5.3/proporz/man/upper_apportionment.Rd | 14 proporz-1.5.3/proporz/man/uri2020.Rd | 6 proporz-1.5.3/proporz/man/weight_votes_matrix.Rd | 17 proporz-1.5.3/proporz/man/zug2018.Rd | 4 proporz-1.5.3/proporz/tests/testthat/data |only proporz-1.5.3/proporz/tests/testthat/helper.R |only proporz-1.5.3/proporz/tests/testthat/test-biproportional-data.R | 6 proporz-1.5.3/proporz/tests/testthat/test-biproportional-errors.R | 39 proporz-1.5.3/proporz/tests/testthat/test-biproportional.R | 49 - proporz-1.5.3/proporz/tests/testthat/test-divisor.R | 10 proporz-1.5.3/proporz/tests/testthat/test-fuzzy.R |only proporz-1.5.3/proporz/tests/testthat/test-proporz-parameters.R | 34 proporz-1.5.3/proporz/tests/testthat/test-proporz.R | 18 proporz-1.5.3/proporz/tests/testthat/test-quorum.R | 37 proporz-1.5.3/proporz/tests/testthat/test-read_bazi.R |only proporz-1.5.3/proporz/tests/testthat/test-round.R | 12 proporz-1.5.3/proporz/tests/testthat/test-shiny.R |only proporz-1.5.3/proporz/tests/testthat/test-utils.R | 2 proporz-1.5.3/proporz/vignettes/apportionment_scenarios.Rmd | 14 proporz-1.5.3/proporz/vignettes/modifying_biproporz.Rmd | 26 76 files changed, 1220 insertions(+), 746 deletions(-)
Title: Paginate the HTML Output of R Markdown with CSS for Print
Description: Use the paged media properties in CSS and the JavaScript
library 'paged.js' to split the content of an HTML document into discrete
pages. Each page can have its page size, page numbers, margin boxes, and
running headers, etc. Applications of this package include books, letters,
reports, papers, business cards, resumes, and posters.
Author: Yihui Xie [aut, cre] ,
Romain Lesur [aut, cph] ,
Christophe Dervieux [ctb] ,
Brent Thorne [aut] ,
Xianying Tan [aut] ,
Atsushi Yasumoto [ctb] ,
Posit Software, PBC [cph, fnd],
Adam Hyde [ctb] ,
Min-Zhong Lu [ctb] ,
Zulko [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between pagedown versions 0.24 dated 2026-04-09 and 0.25 dated 2026-08-28
DESCRIPTION | 6 +++--- LICENSE | 2 +- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/chrome.R | 10 ++++++++-- README.md | 2 +- inst/resources/lua/loft.lua | 29 ++++++++++++++++++++++++++++- tests/test-ci/test-chrome.R | 19 +++++++++++++++---- 8 files changed, 69 insertions(+), 19 deletions(-)
Title: Information Bottleneck Methods for Clustering Mixed-Type Data
Description: Implements multiple variants of the Information Bottleneck ('IB') method
for clustering datasets containing continuous, categorical (nominal/ordinal) and mixed-type variables.
The package provides deterministic, agglomerative, generalised,
sequential, and standard IB clustering algorithms that preserve relevant information while
forming interpretable clusters. The Deterministic Information Bottleneck is described in
Costa et al. (2026) <doi:10.1016/j.patcog.2026.113580>. The standard IB method
originates from Tishby et al. (2000) <doi:10.48550/arXiv.physics/0004057>,
the agglomerative variant from Slonim and Tishby (1999) <https://papers.nips.cc/paper/1651-agglomerative-information-bottleneck>,
the generalised IB from Strouse and Schwab (2017) <doi:10.1162/NECO_a_00961>,
and the sequential IB from Slonim et al. (2002) <doi:10.1145/564376.564401>. Diagnostic and plotting functions are provided to summarise, visualise, and predict from the resulting clusteri [...truncated...]
Author: Angelos Markos [aut, cre],
Efthymios Costa [aut],
Ioanna Papatsouma [aut]
Maintainer: Angelos Markos <amarkos@gmail.com>
Diff between IBclust versions 1.4 dated 2026-07-14 and 1.5 dated 2026-08-28
DESCRIPTION | 8 +- MD5 | 38 ++++++------ NAMESPACE | 1 R/IBclust-package.R | 2 R/aibclust-methods.R | 2 R/as_hclust.R | 2 R/find_elbow.R | 2 R/gibclust-methods.R | 119 ++++++++++++++++++++++++++++++++++++---- R/info_metrics.R | 2 R/make_dendrogram.R | 12 ++-- R/sibclust-methods.R | 136 +++++++++++++++++++++++++++++++++++++++------- build/partial.rdb |binary man/aibclust-methods.Rd | 2 man/as.hclust.aibclust.Rd | 2 man/find_elbow.Rd | 2 man/gibclust-methods.Rd | 45 ++++++++++++--- man/info_metrics.Rd | 2 man/predict.gibclust.Rd | 2 man/predict.sibclust.Rd | 2 man/sibclust-methods.Rd | 46 ++++++++++++--- 20 files changed, 336 insertions(+), 91 deletions(-)
Title: Interactive Forest Plot
Description: Interactive forest plot for clinical trial safety analysis
using 'metalite', 'reactable', 'plotly', and Analysis Data Model (ADaM)
datasets. Includes functionality for adverse event filtering,
incidence-based group filtering, hover-over reveals, and search and sort
operations. The workflow allows for metadata construction, data preparation,
output formatting, and interactive plot generation.
Author: Yilong Zhang [aut],
Benjamin Wang [aut],
Yujie Zhao [aut, cre],
Nan Xiao [ctb],
Hiroaki Fukuda [aut],
Yulia Sidi [ctb],
Xuan Deng [ctb],
Jeetener Chauhan [ctb],
Li Ma [ctb],
Chen Wang [ctb],
Madhusudhan Ginnaram [ctb],
Merck & Co., Inc., Rahway, NJ, [...truncated...]
Maintainer: Yujie Zhao <yujie.zhao@merck.com>
Diff between forestly versions 0.1.5 dated 2026-06-12 and 0.1.6 dated 2026-08-28
forestly-0.1.5/forestly/R/meta_forestly.R |only forestly-0.1.5/forestly/man/meta_forestly.Rd |only forestly-0.1.5/forestly/tests/testthat/helper-meta_forestly.R |only forestly-0.1.5/forestly/tests/testthat/test-independent-testing-meta_forestly.R |only forestly-0.1.6/forestly/DESCRIPTION | 8 forestly-0.1.6/forestly/MD5 | 73 ++-- forestly-0.1.6/forestly/NAMESPACE | 1 forestly-0.1.6/forestly/NEWS.md | 6 forestly-0.1.6/forestly/R/ae_forestly.R | 62 +++ forestly-0.1.6/forestly/R/ae_listing.R | 114 ++++++ forestly-0.1.6/forestly/R/format_ae_forestly.R | 62 +++ forestly-0.1.6/forestly/R/plot.R | 165 ++++++++-- forestly-0.1.6/forestly/R/prepare_ae_forestly.R | 61 +++ forestly-0.1.6/forestly/R/rtf_static_forestly.R | 51 ++- forestly-0.1.6/forestly/README.md | 82 ++++ forestly-0.1.6/forestly/build/vignette.rds |binary forestly-0.1.6/forestly/inst/doc/customize-ae-specific-columns.html | 16 forestly-0.1.6/forestly/inst/doc/customize-color.html | 16 forestly-0.1.6/forestly/inst/doc/customize-diff-label.html | 16 forestly-0.1.6/forestly/inst/doc/customize-digits.html | 16 forestly-0.1.6/forestly/inst/doc/customize-display-only-soc.html | 16 forestly-0.1.6/forestly/inst/doc/customize-listing-columns.html | 16 forestly-0.1.6/forestly/inst/doc/customize-toggle-buttons.html | 18 - forestly-0.1.6/forestly/inst/doc/customize-width.html | 28 - forestly-0.1.6/forestly/inst/doc/customize-xlimit.html | 12 forestly-0.1.6/forestly/inst/doc/forest-plot-static.R | 54 ++- forestly-0.1.6/forestly/inst/doc/forest-plot-static.Rmd | 54 ++- forestly-0.1.6/forestly/inst/doc/forest-plot-static.html | 66 +++- forestly-0.1.6/forestly/man/ae_forestly.Rd | 62 +++ forestly-0.1.6/forestly/man/format_ae_forestly.Rd | 62 +++ forestly-0.1.6/forestly/man/plot_dot.Rd | 55 ++- forestly-0.1.6/forestly/man/plot_errorbar.Rd | 55 ++- forestly-0.1.6/forestly/man/prepare_ae_forestly.Rd | 61 +++ forestly-0.1.6/forestly/man/rtf_static_forestly.Rd | 51 ++- forestly-0.1.6/forestly/man/table_panel.Rd | 55 ++- forestly-0.1.6/forestly/tests/testthat/helper-ae_forestly.R | 2 forestly-0.1.6/forestly/tests/testthat/helper-format_ae_forestly.R | 2 forestly-0.1.6/forestly/tests/testthat/helper-meta_ae.R |only forestly-0.1.6/forestly/tests/testthat/test-ae_forestly.R | 4 forestly-0.1.6/forestly/vignettes/forest-plot-static.Rmd | 54 ++- 40 files changed, 1200 insertions(+), 276 deletions(-)
Title: Data Mining and R Programming for Beginners
Description: Contains functions to simplify the use of data mining methods (classification, regression, clustering, etc.), for students and beginners in R programming. Various R packages are used and wrappers are built around the main functions, to standardize the use of data mining methods (input/output): it brings a certain loss of flexibility, but also a gain of simplicity. The package name came from the French "Fouille de Données en Master 2 Informatique Décisionnelle".
Author: Alexandre Blansche [aut, cre]
Maintainer: Alexandre Blansche <alexandre.blansche@univ-lorraine.fr>
Diff between fdm2id versions 0.9.9 dated 2023-06-12 and 1.0.0 dated 2026-08-28
DESCRIPTION | 23 MD5 | 428 +++--- NAMESPACE | 38 NEWS.md |only R/association.R | 170 +- R/classification.R | 2475 +++++++++++++++++++++++++++++---------- R/clustering.R | 1558 ++++++++++++++++++------ R/dataset.R | 144 +- R/factorial.R | 279 ++++ R/feature.R | 748 ++++++++--- R/misc.R | 419 +++++- R/regression.R | 387 ++++-- R/text.R | 324 ++--- R/visualization.R | 711 +++++++---- build |only data/accident2014.rda |binary data/alcohol.rda |binary data/autompg.rda |binary data/beetles.rda |binary data/birth.rda |binary data/britpop.rda |binary data/capitals.rda |only data/cookies.desc.test.rda |binary data/cookies.desc.train.rda |binary data/cookies.rda |binary data/cookies.y.test.rda |binary data/cookies.y.train.rda |binary data/credit.rda |binary data/data1.rda |binary data/data2.rda |binary data/data3.rda |binary data/decathlon.rda |binary data/eucalyptus.rda |binary data/ionosphere.rda |binary data/linsep.rda |binary data/movies.rda |binary data/ozone.rda |binary data/reg1.rda |binary data/reg1.test.rda |binary data/reg1.train.rda |binary data/reg2.rda |binary data/reg2.test.rda |binary data/reg2.train.rda |binary data/snore.rda |binary data/spine.rda |binary data/spine.test.rda |binary data/spine.train.rda |binary data/temperature.rda |binary data/titanic.rda |binary data/universite.rda |binary data/vowels.rda |binary data/vowels.test.rda |binary data/vowels.train.rda |binary data/wheat.rda |binary data/wine.rda |binary data/zoo.rda |binary inst |only man/ADABOOST.Rd | 14 man/APRIORI.Rd | 17 man/BAGGING.Rd | 14 man/CA.Rd | 8 man/CART.Rd | 22 man/CDA.Rd | 34 man/DBSCAN.Rd | 13 man/EM.Rd | 6 man/FEATURESELECTION.Rd | 27 man/GBREG.Rd |only man/GRADIENTBOOSTING.Rd | 20 man/HCA.Rd | 26 man/KERREG.Rd | 25 man/KMEANS.Rd | 38 man/KNN.Rd | 31 man/LDA.Rd | 24 man/LINREG.Rd | 42 man/LR.Rd | 55 man/MCA.Rd | 12 man/MEANSHIFT.Rd | 8 man/MLP.Rd | 25 man/MLPREG.Rd | 29 man/NB.Rd | 24 man/NMF.Rd | 4 man/PAM.Rd |only man/PCA.Rd | 5 man/POLYREG.Rd | 25 man/QDA.Rd | 24 man/RANDOMFOREST.Rd | 22 man/SOM.Rd | 3 man/SPECTRAL.Rd | 6 man/STUMP.Rd | 28 man/SVM.Rd | 19 man/SVMl.Rd | 20 man/SVMr.Rd | 20 man/SVR.Rd | 27 man/SVRl.Rd | 24 man/SVRr.Rd | 24 man/TEXTMINING.Rd | 13 man/TSNE.Rd | 14 man/alcohol.Rd | 4 man/apriori-class.Rd | 26 man/augmentation.Rd | 6 man/autompg.Rd | 2 man/average.doc.Rd |only man/beetles.Rd | 2 man/boosting-class.Rd | 22 man/boxclus.Rd | 4 man/capitals.Rd |only man/cartdepth.Rd | 2 man/cda-class.Rd | 43 man/check.classes.Rd |only man/closegraphics.Rd | 9 man/compare.Rd | 11 man/compare.accuracy.Rd | 10 man/compare.jaccard.Rd | 18 man/compare.kappa.Rd | 21 man/confusion.Rd | 18 man/cookplot.Rd | 2 man/cost.curves.Rd | 37 man/data.diag.Rd | 10 man/data.gauss.Rd | 8 man/data.parabol.Rd | 8 man/data.target1.Rd | 8 man/data.target2.Rd | 8 man/data.twomoons.Rd | 8 man/data.xor.Rd | 8 man/dataset-class.Rd | 20 man/dbs-class.Rd | 23 man/em-class.Rd | 38 man/eucalyptus.Rd | 2 man/evaluation.adjr2.Rd | 13 man/evaluation.fmeasure.Rd | 36 man/evaluation.fowlkesmallows.Rd | 35 man/evaluation.goodness.Rd | 36 man/evaluation.jaccard.Rd | 29 man/evaluation.kappa.Rd | 5 man/evaluation.precision.Rd | 31 man/evaluation.recall.Rd | 31 man/exportgraphics.Rd | 19 man/factorial-class.Rd | 11 man/filter.rules.Rd | 5 man/frequentwords.Rd | 21 man/general.rules.Rd | 5 man/getvocab.Rd | 19 man/intern.Rd | 8 man/intern.dunn.Rd | 9 man/intern.interclass.Rd | 2 man/intern.intraclass.Rd | 2 man/ionosphere.Rd | 4 man/kmeans.getk.Rd | 35 man/knn-class.Rd | 17 man/leverageplot.Rd | 2 man/loadtext.Rd | 24 man/meanshift-class.Rd | 35 man/model-class.Rd | 14 man/movies.Rd | 8 man/ozone.Rd | 9 man/params-class.Rd | 23 man/performance.Rd | 61 man/plot.apriori.Rd |only man/plot.cda.Rd | 10 man/plot.factorial.Rd | 29 man/plot.selection.Rd |only man/plotcloud.Rd | 13 man/plotclus.Rd | 2 man/plotdata.Rd | 65 - man/plotzipf.Rd | 8 man/predict.factorial.Rd |only man/predict.hca.Rd |only man/predict.pam.Rd |only man/predict.som.Rd |only man/predict.spectral.Rd |only man/predict.textmining.Rd | 7 man/print.boosting.Rd |only man/print.cda.Rd |only man/print.dataset.Rd |only man/print.dbs.Rd |only man/print.em.Rd |only man/print.knn.Rd |only man/print.meanshift.Rd |only man/print.model.Rd |only man/print.params.Rd |only man/print.selection.Rd |only man/print.som.Rd |only man/print.spectral.Rd |only man/query.docs.Rd | 13 man/query.words.Rd | 9 man/regplot.Rd | 2 man/resplot.Rd | 8 man/roc.curves.Rd | 50 man/scatterplot.Rd | 4 man/selectfeatures.Rd | 6 man/selection-class.Rd | 40 man/snore.Rd | 6 man/som-class.Rd | 20 man/spectral-class.Rd | 20 man/spine.Rd | 2 man/splitdata.Rd | 18 man/summary.model.Rd |only man/textmining-class.Rd | 17 man/titanic.Rd | 2 man/treeplot.Rd | 2 man/tune.doc.Rd |only man/vectorize.docs.Rd | 31 man/vectorize.words.Rd | 20 man/vectorizer-class.Rd | 26 man/vowels.Rd | 2 man/wheat.Rd | 2 man/wine.Rd | 2 man/zoo.Rd | 2 tests |only vignettes |only 210 files changed, 7239 insertions(+), 2622 deletions(-)
Title: Survey Analysis Tools for the Chilean Social Observatory
Description: Provides high-level functions to compute estimates (means,
proportions, totals, ratios and quantiles) for complex survey designs,
with automatic classification of statistical reliability, between-year
significance tests and standardised report generation in 'Excel' format
(via 'openxlsx'). It was developed for the Social Observatory
('Observatorio Social') of the Chilean Ministry of Social Development
and implements its data-quality criteria, but it can be applied to any
complex-survey design (for example the Chilean 'CASEN' household survey,
included as example data). The reliability criteria follow Division
Observatorio Social (2023)
<https://bidat.gob.cl/details/ficha/dato/manual-para-la-investigacion-casen-2022>
and Instituto Nacional de Estadisticas (2020)
<https://www.ine.gob.cl/inicio/documentos-de-trabajo/documento/fundamentos-del-est%C3%A1ndar-para-la-evaluaci%C3%B3n-de-la-calidad-de-las-estimaciones-en-encuestas-de-hogares>;
complex-survey estimation methods follo [...truncated...]
Author: Gabriel Sotomayor [aut, cre]
Maintainer: Gabriel Sotomayor <gabrielsotomayorl@gmail.com>
Diff between dosr versions 0.3.4 dated 2026-07-06 and 0.3.6 dated 2026-08-28
DESCRIPTION | 12 - MD5 | 72 +++--- NEWS.md | 130 ++++++++--- R/api_helpers.R | 60 +++++ R/data.R | 12 - R/engine.R | 97 ++++---- R/globals.R | 1 R/multi_bin.R | 157 ++++++++----- R/public_api.R | 152 ++++++++---- R/reporting.R | 244 ++++++++++++-------- R/significance.R | 4 R/survey_direct.R |only R/utils.R | 93 +++++++ data/casen_2022.rda |binary data/casen_2024.rda |binary inst/CITATION |only inst/doc/introduccion.R | 6 inst/doc/introduccion.Rmd | 15 + inst/doc/introduccion.html | 352 +++++++++++++++--------------- inst/doc/metodologia.R | 2 inst/doc/metodologia.Rmd | 5 inst/doc/metodologia.html | 41 +-- man/casen_2022.Rd | 6 man/casen_2024.Rd | 6 man/multi_bin.Rd | 18 + man/obs_cuantil.Rd | 22 + man/obs_media.Rd | 22 + man/obs_prop.Rd | 26 +- man/obs_ratio.Rd | 22 + man/obs_total.Rd | 22 + tests/testthat/helper-synthetic-designs.R |only tests/testthat/test-engine.R | 43 +++ tests/testthat/test-multi-bin.R | 82 ++++++ tests/testthat/test-public-api.R | 132 +++++++++++ tests/testthat/test-significance.R | 26 ++ tests/testthat/test-survey-direct.R |only tests/testthat/test-utils.R | 46 +++ vignettes/introduccion.Rmd | 15 + vignettes/metodologia.Rmd | 5 39 files changed, 1408 insertions(+), 540 deletions(-)
Title: Models Spatially Continuous and Discrete Population Genetic
Structure
Description: A method for modeling genetic data as a combination of discrete
layers, within each of which relatedness may decay continuously with geographic
distance. This package contains code for running analyses (which are implemented
in the modeling language 'rstan') and visualizing and interpreting output. See the
paper for more details on the model and its utility.
Author: Gideon Bradburd [aut, cre]
Maintainer: Gideon Bradburd <bradburd@umich.edu>
Diff between conStruct versions 1.0.6 dated 2024-01-08 and 1.0.7 dated 2026-08-28
CHANGELOG | 2 DESCRIPTION | 10 MD5 | 54 - NAMESPACE | 2 NEWS.md | 5 R/conStruct-package.R | 3 R/model.comparison.R | 10 R/plot.output.R | 56 - R/run.conStruct.R | 16 build/vignette.rds |binary inst/doc/format-data.R | 46 inst/doc/format-data.html | 7 inst/doc/model-comparison.R | 254 ++--- inst/doc/model-comparison.html | 31 inst/doc/run-conStruct.R | 94 - inst/doc/run-conStruct.html | 11 inst/doc/visualize-results.R | 78 - inst/doc/visualize-results.html | 25 man/compare.two.runs.Rd | 10 man/conStruct-package.Rd | 9 src/stanExports_multiK.cc | 34 src/stanExports_multiK.h | 1368 +++++++++++++--------------- src/stanExports_oneK.cc | 34 src/stanExports_oneK.h | 904 ++++++++---------- src/stanExports_space_multiK.cc | 34 src/stanExports_space_multiK.h | 1907 ++++++++++++++++++---------------------- src/stanExports_space_oneK.cc | 34 src/stanExports_space_oneK.h | 1169 +++++++++++------------- 28 files changed, 2887 insertions(+), 3320 deletions(-)
Title: Scraper for Chess-Results.com
Description: Scrape data from <https://chess-results.com> and get a clean
'tibble'. Currently supports tournament information, starting rank,
playing schedule, pairings/results for rounds, and closing rank.
Author: Sirf Haru [aut, cre, cph]
Maintainer: Sirf Haru <sirfharu@proton.me>
Diff between chessResults versions 2026.07.05 dated 2026-07-11 and 2026.08.27 dated 2026-08-28
chessResults-2026.07.05/chessResults/tests/testthat.R |only chessResults-2026.08.27/chessResults/DESCRIPTION | 31 chessResults-2026.08.27/chessResults/MD5 | 12 chessResults-2026.08.27/chessResults/NEWS.md |only chessResults-2026.08.27/chessResults/R/chess_results.R | 548 ++++++++++---- chessResults-2026.08.27/chessResults/README.md | 87 +- chessResults-2026.08.27/chessResults/inst |only chessResults-2026.08.27/chessResults/man/chess_results.Rd | 29 chessResults-2026.08.27/chessResults/tests/spelling.R |only 9 files changed, 509 insertions(+), 198 deletions(-)
Title: Interactive Training App for Data Science and AI Skills
Description: An interactive 'shiny' training companion for people who are
new to data, developed for World Health Organization data trainings.
Bundles hands-on modules for importing data, missing values, outliers,
text cleaning, merging, visualization, and basic statistics, plus a set
of AI-skills pages (prompting levels, a prompt gallery, AI safety rules,
and a methodology case study) and an interactive quiz with per-session
topic filters. Launch the app with run_cata().
Author: Shanlong Ding [aut, cre]
Maintainer: Shanlong Ding <dings@who.int>
Diff between cataScience versions 2.1.2 dated 2026-07-30 and 2.1.3 dated 2026-08-28
DESCRIPTION | 6 MD5 | 8 NEWS.md | 58 +++-- README.md | 120 ++++++------ inst/app/R/app-function.R | 455 +++++++++++++++++++++++----------------------- 5 files changed, 337 insertions(+), 310 deletions(-)
Title: Bootstrap Methods for Complete Survey Data
Description: Bootstrap resampling methods have been widely studied in the context of survey data. This package implements various bootstrap resampling techniques tailored for survey data, with a focus on stratified simple random sampling and stratified two-stage cluster sampling. It provides tools for precise and consistent bootstrap variance estimation for population totals, means, and quartiles. Additionally, it enables easy generation of bootstrap samples for in-depth analysis.
Author: Zeinab Mashreghi [aut, cre]
Maintainer: Zeinab Mashreghi <z.mashreghi@uwinnipeg.ca>
Diff between bootsurv versions 0.0.1 dated 2024-05-17 and 0.1.0 dated 2026-08-28
DESCRIPTION | 13 MD5 | 25 NAMESPACE | 17 NEWS.md |only R/BootReplicates.R |only R/BootstrapWeightsMethods.R | 150 ++++- R/DirectBootstrapMethods.R | 139 ++++ R/PseudoPopBootstrapMethods.R | 110 +++ R/TwoStageBootsrtrapMethods.R | 1180 +++++++++++++++++++++++------------------- man/All.data.Rd | 7 man/boot.replicates.Rd |only man/boot.twostage.Rd | 102 ++- man/boot.weights.stsrs.Rd | 48 + man/direct.boot.stsrs.Rd | 40 + man/pseudopop.boot.stsrs.Rd | 49 + 15 files changed, 1191 insertions(+), 689 deletions(-)
Title: Class and Methods Definitions for Packages 'aws', 'adimpro',
'fmri', 'dwi'
Description: Defines the method extract and provides 'openMP' support as needed in several packages.
Author: Joerg Polzehl [aut, cre],
Felix Anker [ctb]
Maintainer: Joerg Polzehl <joerg.polzehl@wias-berlin.de>
Diff between awsMethods versions 1.1-1 dated 2019-05-08 and 1.1-2 dated 2026-08-28
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- src/omp_funcs.c | 2 +- 3 files changed, 9 insertions(+), 9 deletions(-)