Title: Manipulate MCMC Samples
Description: Functions and classes to store, manipulate and summarise
Monte Carlo Markov Chain (MCMC) samples. For more information see
Brooks et al. (2011) <isbn:978-1-4200-7941-8>.
Author: Joe Thorley [aut, cre] ,
Kirill Mueller [ctb] ,
Nadine Hussein [ctb] ,
Ayla Pearson [ctb] ,
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between mcmcr versions 0.6.2 dated 2025-01-23 and 0.7.0 dated 2026-08-30
mcmcr-0.6.2/mcmcr/R/parameters.R |only mcmcr-0.6.2/mcmcr/tests/testthat/test-parameters.R |only mcmcr-0.7.0/mcmcr/DESCRIPTION | 20 - mcmcr-0.7.0/mcmcr/MD5 | 204 ++++++------- mcmcr-0.7.0/mcmcr/NAMESPACE | 102 +++--- mcmcr-0.7.0/mcmcr/NEWS.md | 44 ++ mcmcr-0.7.0/mcmcr/R/as-mcmc.list.R | 10 mcmcr-0.7.0/mcmcr/R/as-mcmcarray.R | 8 mcmcr-0.7.0/mcmcr/R/as-mcmcr.R | 4 mcmcr-0.7.0/mcmcr/R/as-mcmcrs.R | 4 mcmcr-0.7.0/mcmcr/R/as-term.R | 4 mcmcr-0.7.0/mcmcr/R/bind-dimensions-n.R | 8 mcmcr-0.7.0/mcmcr/R/bind-dimensions.R | 27 + mcmcr-0.7.0/mcmcr/R/check.R | 23 + mcmcr-0.7.0/mcmcr/R/chk.R | 51 ++- mcmcr-0.7.0/mcmcr/R/coef.R | 192 ++++++++++-- mcmcr-0.7.0/mcmcr/R/combine-dimensions.R | 13 mcmcr-0.7.0/mcmcr/R/combine-samples.R | 14 mcmcr-0.7.0/mcmcr/R/converged.R | 42 ++ mcmcr-0.7.0/mcmcr/R/internal.R | 27 + mcmcr-0.7.0/mcmcr/R/mcmc-aperm.R | 5 mcmcr-0.7.0/mcmcr/R/mcmc-map.R | 8 mcmcr-0.7.0/mcmcr/R/mcmcr-package.R | 2 mcmcr-0.7.0/mcmcr/R/params.R | 8 mcmcr-0.7.0/mcmcr/R/pars.R | 25 + mcmcr-0.7.0/mcmcr/R/rhat.R | 12 mcmcr-0.7.0/mcmcr/R/sort.R | 4 mcmcr-0.7.0/mcmcr/R/split-chains.R | 4 mcmcr-0.7.0/mcmcr/R/subset.R | 68 +++- mcmcr-0.7.0/mcmcr/R/terms.R | 8 mcmcr-0.7.0/mcmcr/R/tidy.R | 19 + mcmcr-0.7.0/mcmcr/R/zero.R | 2 mcmcr-0.7.0/mcmcr/README.md | 22 - mcmcr-0.7.0/mcmcr/inst/JOSS/paper.bib | 6 mcmcr-0.7.0/mcmcr/inst/WORDLIST | 1 mcmcr-0.7.0/mcmcr/man/as.mcarray.Rd | 8 mcmcr-0.7.0/mcmcr/man/as.mcmcarray.Rd | 8 mcmcr-0.7.0/mcmcr/man/as.mcmcr.Rd | 12 mcmcr-0.7.0/mcmcr/man/as_nlist.mcmcr.Rd | 4 mcmcr-0.7.0/mcmcr/man/as_nlists.mcmcr.Rd | 4 mcmcr-0.7.0/mcmcr/man/bind_dimensions.Rd | 6 mcmcr-0.7.0/mcmcr/man/bind_dimensions_n.Rd | 6 mcmcr-0.7.0/mcmcr/man/bind_parameters.Rd | 6 mcmcr-0.7.0/mcmcr/man/coef.Rd | 20 + mcmcr-0.7.0/mcmcr/man/combine_dimensions.Rd | 6 mcmcr-0.7.0/mcmcr/man/combine_samples.Rd | 6 mcmcr-0.7.0/mcmcr/man/combine_samples_n.Rd | 6 mcmcr-0.7.0/mcmcr/man/figures/README-unnamed-chunk-2-1.png |binary mcmcr-0.7.0/mcmcr/man/figures/logo.png |binary mcmcr-0.7.0/mcmcr/man/fill_all.mcarray.Rd | 4 mcmcr-0.7.0/mcmcr/man/fill_all.mcmcarray.Rd | 4 mcmcr-0.7.0/mcmcr/man/fill_all.mcmcr.Rd | 4 mcmcr-0.7.0/mcmcr/man/fill_na.mcarray.Rd | 4 mcmcr-0.7.0/mcmcr/man/fill_na.mcmcarray.Rd | 4 mcmcr-0.7.0/mcmcr/man/fill_na.mcmcr.Rd | 4 mcmcr-0.7.0/mcmcr/man/is.mcarray.Rd | 8 mcmcr-0.7.0/mcmcr/man/is.mcmcarray.Rd | 8 mcmcr-0.7.0/mcmcr/man/is.mcmcr.Rd | 8 mcmcr-0.7.0/mcmcr/man/is.mcmcrs.Rd | 8 mcmcr-0.7.0/mcmcr/man/mcmc_aperm.Rd | 4 mcmcr-0.7.0/mcmcr/man/mcmc_map.Rd | 4 mcmcr-0.7.0/mcmcr/man/mcmcarray-object.Rd | 2 mcmcr-0.7.0/mcmcr/man/mcmcr-object.Rd | 2 mcmcr-0.7.0/mcmcr/man/mcmcr-package.Rd | 5 mcmcr-0.7.0/mcmcr/man/mcmcr_example.Rd | 2 mcmcr-0.7.0/mcmcr/man/mcmcrs-object.Rd | 2 mcmcr-0.7.0/mcmcr/man/mcmcrs.Rd | 8 mcmcr-0.7.0/mcmcr/man/params.Rd | 9 mcmcr-0.7.0/mcmcr/man/reexports.Rd | 20 - mcmcr-0.7.0/mcmcr/man/vld_mcmcr.Rd | 2 mcmcr-0.7.0/mcmcr/tests/testthat/test-aaa-deprecated.R | 47 ++ mcmcr-0.7.0/mcmcr/tests/testthat/test-aaa-zero.R | 12 mcmcr-0.7.0/mcmcr/tests/testthat/test-as-mcarray.R | 8 mcmcr-0.7.0/mcmcr/tests/testthat/test-as-mcmc.R | 7 mcmcr-0.7.0/mcmcr/tests/testthat/test-as-mcmcarray.R | 8 mcmcr-0.7.0/mcmcr/tests/testthat/test-as-mcmcr.R | 10 mcmcr-0.7.0/mcmcr/tests/testthat/test-as-term.R | 32 +- mcmcr-0.7.0/mcmcr/tests/testthat/test-bind-chains.R | 55 ++- mcmcr-0.7.0/mcmcr/tests/testthat/test-bind-dimensions-n.R | 6 mcmcr-0.7.0/mcmcr/tests/testthat/test-bind-dimensions.R | 11 mcmcr-0.7.0/mcmcr/tests/testthat/test-bind-iterations.R | 26 + mcmcr-0.7.0/mcmcr/tests/testthat/test-bind-parameters.R | 24 + mcmcr-0.7.0/mcmcr/tests/testthat/test-chk.R | 30 + mcmcr-0.7.0/mcmcr/tests/testthat/test-coef.R | 169 +++++++++- mcmcr-0.7.0/mcmcr/tests/testthat/test-combine-dimensions.R | 45 ++ mcmcr-0.7.0/mcmcr/tests/testthat/test-combine-samples-n.R | 65 +++- mcmcr-0.7.0/mcmcr/tests/testthat/test-converged.R | 16 - mcmcr-0.7.0/mcmcr/tests/testthat/test-esr.R | 193 ++++++++++-- mcmcr-0.7.0/mcmcr/tests/testthat/test-ess.R | 42 ++ mcmcr-0.7.0/mcmcr/tests/testthat/test-estimates.R | 101 +++++- mcmcr-0.7.0/mcmcr/tests/testthat/test-fill-all.R | 12 mcmcr-0.7.0/mcmcr/tests/testthat/test-fill-na.R | 12 mcmcr-0.7.0/mcmcr/tests/testthat/test-mcmc-aperm.R | 10 mcmcr-0.7.0/mcmcr/tests/testthat/test-mcmc-map.R | 69 +++- mcmcr-0.7.0/mcmcr/tests/testthat/test-npdims.R | 5 mcmcr-0.7.0/mcmcr/tests/testthat/test-nsims.R | 10 mcmcr-0.7.0/mcmcr/tests/testthat/test-pars.R | 11 mcmcr-0.7.0/mcmcr/tests/testthat/test-pdims.R | 25 + mcmcr-0.7.0/mcmcr/tests/testthat/test-rhat.R | 116 ++++++- mcmcr-0.7.0/mcmcr/tests/testthat/test-split-chains.R | 4 mcmcr-0.7.0/mcmcr/tests/testthat/test-subset.R | 35 +- mcmcr-0.7.0/mcmcr/tests/testthat/test-summary.R | 12 mcmcr-0.7.0/mcmcr/tests/testthat/test-tidy.R | 32 +- mcmcr-0.7.0/mcmcr/tests/testthat/test-vld.R | 6 104 files changed, 1866 insertions(+), 599 deletions(-)
Title: 'DEXi' Decision Tree Analysis and Visualization
Description: Provides a versatile toolkit for analyzing and visualizing 'DEXi' (Decision EXpert for education)
decision trees, facilitating multi-criteria decision analysis directly within R. Users can
read .dxi files, manipulate decision trees, and evaluate various scenarios. It supports sensitivity
analysis through Monte Carlo simulations, one-at-a-time approaches, and variance-based
methods, helping to discern the impact of input variations. Additionally, it includes functionalities
for generating sampling plans and an array of visualization options for decision trees and
analysis results. A distinctive feature is the synoptic table plot, aiding in the efficient
comparison of scenarios. Whether for in-depth decision modeling or sensitivity analysis, this
package stands as a comprehensive solution. Definition of sensitivity analyses available in
Carpani, Bergez and Monod (2012) <doi:10.1016/j.envsoft.2011.10.002> and detailed description of the package available in
Alaphilippe et al. (2025) [...truncated...]
Author: Roland Allart [aut],
Jacques-Eric Bergez [aut] ,
Marta Carpani [aut],
Herve Monod [aut] ,
Aude Alaphilippe [ctb] ,
Nicolas Cavan [ctb, cre],
INRAE [cph] )
Maintainer: Nicolas Cavan <nicolas.cavan@inrae.fr>
Diff between dexisensitivity versions 1.0.2 dated 2025-09-08 and 1.0.3 dated 2026-08-30
DESCRIPTION | 8 MD5 | 31 +-- NEWS.md | 6 R/data.R | 2 R/option.R | 28 ++ R/synoptique.R | 125 ++++++++++--- README.md | 2 inst/testdata/data_synoptic_graph_dexifruits_v1.rds |binary inst/testdata/data_synoptic_graph_dexifruits_v1_depth5.rds |only inst/testdata/data_synoptic_graph_masc2.rds |binary inst/testdata/data_synoptic_graph_missing_values_masc2.rds |binary man/create_list_synoptique.Rd | 19 + man/create_synoptique.Rd | 14 + man/dexisensitivity-package.Rd | 2 man/masc2.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test-synoptique.R | 38 +++ 17 files changed, 218 insertions(+), 59 deletions(-)
More information about dexisensitivity at CRAN
Permanent link
Title: Health Geography Toolbox for Model-Based Analysis of Infections
Panel Data
Description: Within epidemic outbreaks, infections grow and decline differently between regions, and the velocity of spatial spread differs between countries. The swash library offers a set of model-based analyses for these topics. Spread velocity may be analysed with the Swash-Backwash Model for the Single Epidemic Wave and corresponding functions for bootstrap confidence intervals, country comparison, and visualization of results. Differences in epidemic growth between regions may be analysed using logistic growth models, exponential growth models, Hawkes processes and breakpoint analyses. All functionalities are accessed by the class "infpan" for infections panel data defined in this package, which is built from a data.frame provided by the user.
Author: Thomas Wieland [aut, cre]
Maintainer: Thomas Wieland <geowieland@googlemail.com>
Diff between swash versions 2.0.1 dated 2026-05-24 and 2.0.2 dated 2026-08-30
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 7 +++++-- R/swash.R | 22 ++++++++++++++++++---- build/partial.rdb |binary data/C19dNUTSdata.rda |binary data/COVID19Cases_geoRegion.rda |binary data/Infections.rda |binary data/Oesterreich_Faelle.rda |binary data/RKI_Corona_counties.rda |binary data/did_fatalities_splm_coef.rda |binary man/C19dNUTSdata.Rd | 2 +- 12 files changed, 39 insertions(+), 22 deletions(-)
Title: Estimation of Overlapping in Empirical Distributions
Description: Functions for estimating the overlapping area of two or more kernel density estimations from empirical data.
Author: Massimiliano Pastore [aut, cre],
Pierfrancesco Alaimo Di Loro [ctb],
Marco Mingione [ctb],
Antonio Calcagni' [ctb]
Maintainer: Massimiliano Pastore <massimiliano.pastore@unipd.it>
Diff between overlapping versions 2.4 dated 2026-02-19 and 2.5 dated 2026-08-30
DESCRIPTION | 8 +++--- MD5 | 25 ++++++++++++--------- NAMESPACE | 2 - NEWS.md | 59 ++++++++++++++++++++++++++++----------------------- R/boot.overlap.R | 9 +++++-- R/check.missing.R |only R/overlap.R | 4 +++ R/ovmult.R | 3 ++ R/perm.test.R | 6 ++--- inst |only man/boot.overlap.Rd | 22 ++++++++++++++++++- man/check.missing.Rd |only man/overlap.Rd | 6 +++++ man/ovmult.Rd | 8 ++++++ man/perm.test.Rd | 3 +- 15 files changed, 105 insertions(+), 50 deletions(-)
More information about CohortUtilisation at CRAN
Permanent link
Title: Sequence Manipulation Utilities
Description: Tools for reading and writing biological sequences in multiple
formats, including 'FASTA', 'PHYLIP', 'CLUSTAL', 'STOCKHOLM', 'MEGA' and
'GenBank'. Supports interleaved and sequential layouts where applicable,
and reads or writes gzip, bzip2 and xz compressed files transparently.
Converts between formats, renames sequences via a two-column mapping,
summarizes sequence counts, lengths, GC content and ambiguous characters,
and manipulates sequence sets (e.g., filtering by patterns and computing
consensus sequences from alignments). Also includes functions to download
nucleotide records from NCBI by accession.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between seqmagick versions 0.1.8 dated 2026-01-31 and 0.1.9 dated 2026-08-30
.aspell |only DESCRIPTION | 23 MD5 | 129 NAMESPACE | 103 NEWS.md | 141 R/NCBI.R | 199 - R/aln.R | 62 R/bam2DNAStringSet.R | 76 R/consensus.R | 267 - R/fa_combine.R | 60 R/fa_conversion.R | 66 R/fas2phy.R | 34 R/filter.R | 141 R/get_id.R | 36 R/hamming.R | 230 - R/mega.r | 246 - R/phy2fas.R | 36 R/phylip.R | 16 R/read.R | 424 +- R/rename.R | 189 - R/renameTXT.R | 116 R/replaceInside.R | 121 R/seqlen.R | 71 R/seqmagick-package.R | 6 R/utilities.R | 31 R/write.R | 279 - README.md |only build/vignette.rds |binary inst/doc/seqmagick.R | 163 inst/doc/seqmagick.Rmd | 344 + inst/doc/seqmagick.html | 821 ++-- inst/extdata/AB115403.fa | 22 inst/extdata/AB115403.gb | 112 inst/extdata/HA.fas | 4612 ++++++++++++------------- inst/extdata/HA.phy | 202 - inst/extdata/mega/Chloroplast_Martin.meg | 5538 +++++++++++++++---------------- inst/extdata/mega/Crab_rRNA.meg | 256 - inst/extdata/mega/D-loop_Vigilant.meg | 152 inst/extdata/mega/Drosophila_Adh.meg | 468 +- man/bam2DNAStringSet.Rd | 44 man/bam2DNAStringSet2.Rd | 44 man/bs_aln.Rd | 62 man/bs_filter.Rd | 62 man/bs_hamming.Rd | 66 man/bs_rename.Rd | 56 man/consensus.Rd | 82 man/download_genbank.Rd | 68 man/fa_combine.Rd | 70 man/fa_conversion.Rd | 72 man/fa_filter.Rd | 74 man/fa_rename.Rd | 67 man/fa_summary.Rd |only man/fa_write.Rd | 66 man/fas2phy.Rd | 54 man/get_id.Rd | 58 man/msa-read.Rd | 4 man/phy2fas.Rd | 58 man/phy_read.Rd | 48 man/phy_write.Rd | 66 man/renameTXT.Rd | 54 man/replaceInside.Rd | 54 man/seqlen.Rd | 40 man/seqmagick-package.Rd | 7 tests |only vignettes/seqmagick.Rmd | 344 + vignettes/seqmagick.bib | 2 66 files changed, 9014 insertions(+), 8400 deletions(-)
Title: Inferential Methods for Multimodal and Other Networks
Description: A set of tools for testing networks.
It includes functions for univariate and multivariate conditional uniform graph
and quadratic assignment procedure testing, and network regression.
The package is a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Built on the 'manynet' package, all functions operate with matrices,
edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode and two-mode (bipartite) networks.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 1.6.8 dated 2026-07-31 and 1.7.0 dated 2026-08-30
migraph-1.6.8/migraph/man/mpn_cow.Rd |only migraph-1.7.0/migraph/DESCRIPTION | 10 migraph-1.7.0/migraph/MD5 | 74 +++--- migraph-1.7.0/migraph/NAMESPACE | 52 ++-- migraph-1.7.0/migraph/NEWS.md | 65 +++++ migraph-1.7.0/migraph/R/data_mpn.R | 179 ++++++++++++++- migraph-1.7.0/migraph/R/model_diffusion.R | 6 migraph-1.7.0/migraph/R/tutorial_run.R | 3 migraph-1.7.0/migraph/R/zzz.R |only migraph-1.7.0/migraph/data/mpn_DE_1990.rda |binary migraph-1.7.0/migraph/data/mpn_DE_2008.rda |binary migraph-1.7.0/migraph/data/mpn_IT_1990.rda |binary migraph-1.7.0/migraph/data/mpn_IT_2008.rda |binary migraph-1.7.0/migraph/data/mpn_UK_1990.rda |binary migraph-1.7.0/migraph/data/mpn_UK_2008.rda |binary migraph-1.7.0/migraph/data/mpn_bristol.rda |binary migraph-1.7.0/migraph/data/mpn_cow.rda |only migraph-1.7.0/migraph/data/mpn_cow_igo.rda |binary migraph-1.7.0/migraph/data/mpn_cow_trade.rda |binary migraph-1.7.0/migraph/data/mpn_elite_mex.rda |binary migraph-1.7.0/migraph/data/mpn_elite_usa_advice.rda |binary migraph-1.7.0/migraph/data/mpn_elite_usa_money.rda |binary migraph-1.7.0/migraph/data/mpn_evs_deu.rda |only migraph-1.7.0/migraph/data/mpn_evs_gbr.rda |only migraph-1.7.0/migraph/data/mpn_evs_ita.rda |only migraph-1.7.0/migraph/data/mpn_ryanair.rda |binary migraph-1.7.0/migraph/data/mpn_senate.rda |only migraph-1.7.0/migraph/data/mpn_senate_dem.rda |binary migraph-1.7.0/migraph/data/mpn_senate_over.rda |binary migraph-1.7.0/migraph/data/mpn_senate_rep.rda |binary migraph-1.7.0/migraph/man/make_play.Rd | 1 migraph-1.7.0/migraph/man/mpn_bristol.Rd | 22 - migraph-1.7.0/migraph/man/mpn_cow_combined.Rd |only migraph-1.7.0/migraph/man/mpn_cow_separate.Rd |only migraph-1.7.0/migraph/man/mpn_elite_mex.Rd | 2 migraph-1.7.0/migraph/man/mpn_elite_usa.Rd | 58 ++-- migraph-1.7.0/migraph/man/mpn_evs.Rd | 17 - migraph-1.7.0/migraph/man/mpn_evs_combined.Rd |only migraph-1.7.0/migraph/man/mpn_ryanair.Rd | 23 - migraph-1.7.0/migraph/man/mpn_senate.Rd |only migraph-1.7.0/migraph/man/mpn_senate112.Rd | 118 +++++---- migraph-1.7.0/migraph/tests/testthat/Rplots.pdf |binary migraph-1.7.0/migraph/tests/testthat/test-measure_over.R | 19 + migraph-1.7.0/migraph/tests/testthat/test-zzz.R |only 44 files changed, 473 insertions(+), 176 deletions(-)
Title: Native and Extensible R Driver for 'Zarr'
Description: The 'Zarr' specification is widely used to build libraries for the storage and retrieval of n-dimensional array data from data stores ranging from local file systems to the cloud. This package is a native 'Zarr' implementation in R with support for all required features of 'Zarr' version 3. It is designed to be extensible such that new stores, codecs and extensions can be added easily.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between zarr versions 0.4.2 dated 2026-07-11 and 0.5.0 dated 2026-08-30
DESCRIPTION | 10 - MD5 | 69 +++++++----- NAMESPACE | 4 NEWS.md | 13 ++ R/api.R | 96 ++++++++++++++++- R/array.R | 228 +++++++++++++++++++++++++++++++++++------- R/array_builder.R | 13 +- R/chunking.R | 119 ++++++++++++++++++++-- R/chunking_regular.R | 33 +++++- R/codec.R | 20 +++ R/convention.R | 20 ++- R/group.R | 24 ---- R/node.R | 230 +++++-------------------------------------- R/sharding.R | 1 R/store.R | 52 +++++++++ R/store_local.R | 54 ++++++++-- R/store_memory.R | 34 +++++- R/store_s3.R |only R/utils.R | 57 ++++++++++ R/zarr.R | 19 --- R/zarr_object.R |only README.md | 16 +- man/chunk_grid_regular.Rd | 8 + man/chunk_grid_sharded.Rd | 5 man/chunking.Rd | 31 +++++ man/open_zarr.Rd | 27 +++-- man/optimal_chunking.Rd |only man/s3_list_dir.Rd |only man/zarr_array.Rd | 96 ++++++++++++++++- man/zarr_group.Rd | 6 - man/zarr_httpstore.Rd | 5 man/zarr_localstore.Rd | 80 ++++++++++++++ man/zarr_memorystore.Rd | 54 ++++++++++ man/zarr_node.Rd | 48 ++++---- man/zarr_object.Rd |only man/zarr_s3store.Rd |only man/zarr_store.Rd | 84 +++++++++++++++ tests/testthat/test-resize.R |only tests/testthat/test-zarr.R | 99 ++++++++++++++++++ 39 files changed, 1235 insertions(+), 420 deletions(-)
Title: Synthetic Experience Tracking Insurance Claims
Description: Creation of an individual claims simulator which generates various
features of non-life insurance claims. An initial set of test parameters,
designed to mirror the experience of an Auto Liability portfolio, were set
up and applied by default to generate a realistic test data set of
individual claims (see vignette). The simulated data set then allows
practitioners to back-test the validity of various reserving models and to
prove and/or disprove certain actuarial assumptions made in claims
modelling. The distributional assumptions used to generate this data set can
be easily modified by users to match their experiences. Reference: Avanzi B,
Taylor G, Wang M, Wong B (2020) "SynthETIC: an individual insurance claim
simulator with feature control" <doi:10.48550/arXiv.2008.05693>.
Author: Benjamin Avanzi [aut],
William Ho [aut],
Greg Taylor [aut],
Melantha Wang [aut, cre],
Bernard Wong [aut],
Patrick Laub [ctb]
Maintainer: Melantha Wang <wang.melantha@gmail.com>
Diff between SynthETIC versions 1.1.1 dated 2025-11-02 and 1.1.2 dated 2026-08-30
DESCRIPTION | 15 ++- MD5 | 18 ++-- NEWS.md | 29 ++++++ R/features_02a_claim_covariates.R | 37 +++++++- inst/doc/SynthETIC-covariates-demo.html | 135 +++++++++++++++----------------- inst/doc/SynthETIC-demo.html | 19 ++-- man/SynthETIC-package.Rd | 5 + man/claim_size_adj.Rd | 7 + man/simulate_covariates.Rd | 8 + tests |only 10 files changed, 172 insertions(+), 101 deletions(-)
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to safely and efficiently organize and execute
Monte Carlo simulation experiments in R.
The package controls the structure and back-end of Monte Carlo simulation experiments
by utilizing a generate-analyse-summarise workflow. The workflow safeguards against
common simulation coding issues, such as automatically re-simulating non-convergent results,
prevents inadvertently overwriting simulation files, catches error and warning messages
during execution, implicitly supports parallel processing with high-quality random number
generation, and provides tools for managing high-performance computing (HPC) array jobs
submitted to schedulers such as SLURM. For a pedagogical introduction to the package see
Sigal and Chalmers (2016) <doi:10.1080/10691898.2016.1246953>. For a more in-depth overview of
the package and its design philosophy see Chalmers and Adkins (2020) <doi:10.20982/tqmp.16.4.p248>.
Author: Phil Chalmers [aut, cre] ,
Matthew Sigal [ctb],
Ogreden Oguzhan [ctb],
Mikko Roenkkoe [aut],
Moritz Ketzer [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 2.26 dated 2026-07-27 and 2.27 dated 2026-08-30
DESCRIPTION | 12 +- MD5 | 62 +++++++------- NAMESPACE | 58 ++++++++----- NEWS.md | 12 ++ R/SimCollect.R | 71 +++++++++------- R/SimErrors.R | 8 + R/SimExtract.R | 4 R/SimWarnings.R | 8 + R/addMissing.R | 1 R/descript.R | 62 +++++++++----- R/functions.R | 4 R/runArraySimulation.R | 8 - R/runSimulation.R | 19 ++-- R/summary_functions.R | 1 R/util.R | 29 ++++++ inst/doc/Catch_errors.html | 27 +----- inst/doc/Fixed_obj_fun.html | 10 +- inst/doc/HPC-computing.html | 4 inst/doc/MultipleAnalyses.html | 4 inst/doc/Parallel-computing.html | 4 inst/doc/Saving-results.html | 50 +---------- inst/doc/SimDesign-intro.html | 163 +++++++++++++++------------------------ man/EDR.Rd | 2 man/SimCollect.Rd | 11 +- man/SimErrors.Rd | 6 + man/SimWarnings.Rd | 6 + man/addMissing.Rd | 2 man/descript.Rd | 25 ++++- man/runArraySimulation.Rd | 7 - man/runSimulation.Rd | 13 +-- tests/tests/test-02-aggregate.R | 16 +-- tests/tests/test-03-array.R | 94 ++++++++++++++++------ 32 files changed, 445 insertions(+), 358 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed at the Sugihara Lab ('UCSD/SIO'). Primary methods include 'Simplex' projection from Sugihara & May (1990) <doi:10.1038/344734a0>, Sequential locally-weighted global linear maps 'S-map': Sugihara (1994) <doi:10.1098/rsta.1994.0106>, Convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'Multiview embedding' from Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] ,
George Sugihara [aut, ccp] ,
Ethan Deyle [aut] ,
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 2.0.1 dated 2026-07-30 and 2.0.2 dated 2026-08-30
DESCRIPTION | 8 - MD5 | 36 +++-- NEWS.md | 4 R/EDM_AppSweeps.R | 33 +++-- R/EDM_AuxFuncs.R | 167 ++++++++++++++++++--------- R/EDM_CCM.R | 89 +++++++++----- R/EDM_Embed.R | 76 +++++++++++- R/EDM_FileIO.R | 25 +++- R/EDM_Multiview.R | 5 R/EDM_Neighbors.R | 221 ++++++++++++++++++++++++++++++------ R/EDM_SMap.R | 191 +++++++++++++++++++++---------- R/EDM_Simplex.R | 86 ++++++++++---- inst/doc/rEDM-tutorial.html | 28 ++-- inst/extdata/Smplx_NeighborTies.csv |only man/Embed.Rd | 44 ++++--- man/PredictInterval.Rd | 4 man/PredictNonlinear.Rd | 4 man/RequireE.Rd |only man/SMap.Rd | 10 + man/Simplex.Rd | 20 ++- 20 files changed, 758 insertions(+), 293 deletions(-)
Title: True Random Numbers using RANDOM.ORG
Description: The true random number service provided by the RANDOM.ORG
website created by Mads Haahr samples atmospheric noise via radio tuned to
an unused broadcasting frequency together with a skew correction algorithm
due to John von Neumann. More background is available in the included
vignette based on an essay by Mads Haahr. In its current form, the package
offers functions to retrieve random integers, randomized sequences and
random strings.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between random versions 0.2.6 dated 2017-02-05 and 0.2.7 dated 2026-08-30
ChangeLog | 65 +++++++++++++++++++++++++++++ DESCRIPTION | 19 +++++--- MD5 | 29 ++++++------- R/random.R | 6 +- README.md | 11 +++-- build/vignette.rds |binary inst/doc/random-essay.Rnw | 52 ++++++++++++----------- inst/doc/random-essay.pdf |binary inst/doc/random-intro.R | 9 +--- inst/doc/random-intro.Rnw | 15 ++++-- inst/doc/random-intro.pdf |binary man/random.Rd | 6 +- vignettes/auto |only vignettes/random-essay.Rnw | 52 ++++++++++++----------- vignettes/random-intro.Rnw | 15 ++++-- vignettes/random-intro.bib | 98 +++++++++++++++++++++++++++++++-------------- 16 files changed, 251 insertions(+), 126 deletions(-)
Title: Data Sets from the History of Statistics and Data Visualization
Description: The 'HistData' package provides a collection of small data sets
that are interesting and important in the history of statistics and data
visualization. The goal of the package is to make these available, both for
instructional use and for historical research. Some of these present interesting
challenges for graphics or analysis in R.
Author: Michael Friendly [aut, cre] ,
Stephane Dray [aut] ,
Peter Li [aut] ,
David Bellhouse [aut],
Hadley Wickham [ctb],
James Hanley [ctb],
Dennis Murphy [ctb],
Luiz Droubi [ctb],
James Riley [ctb],
Antoine de Falguerolles [ctb],
Monique Graf [ctb],
Nevill [...truncated...]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between HistData versions 1.0.0 dated 2025-11-30 and 1.1.0 dated 2026-08-30
DESCRIPTION | 18 +++++++------ MD5 | 48 ++++++++++++++++++++++++----------- NAMESPACE | 12 +++++--- NEWS.md | 11 ++++++++ R/Ebbinghaus.R |only R/Federalist.R |only R/Perozzo.R |only R/data-concepts.R | 29 +++++++++++++-------- build/partial.rdb |binary build/vignette.rds |binary data/Ebbinghaus.RData |only data/Federalist_corpus.RData |only data/Federalist_markers.RData |only data/Federalist_text.RData |only data/Perozzo.RData |only data/Pollen.RData |binary data/Quarrels.RData |binary inst/doc/HistData-Challenge.R |only inst/doc/HistData-Challenge.Rmd |only inst/doc/HistData-Challenge.html |only inst/doc/Snow_deaths-duplicates.html | 4 +- man/Cholera.Rd | 2 - man/Ebbinghaus.Rd |only man/Federalist.Rd |only man/Macdonell.Rd | 2 + man/Nightingale.Rd | 4 ++ man/Perozzo.Rd |only man/Quarrels.Rd | 7 ++--- man/Snow.Rd | 5 +++ man/figures/logo.png |binary vignettes/HistData-Challenge.Rmd |only vignettes/figures |only vignettes/histdata.bib |only 33 files changed, 95 insertions(+), 47 deletions(-)
Title: Estimate, Compare, and Visualize Healthcare Resource Utilization
for Real-World Evidence
Description: Tools to estimate, compare, and visualize healthcare resource utilization using
data derived from electronic health records or real-world evidence sources.
The package supports pre index and post index analysis, patient cohort comparison,
and customizable summaries and visualizations for clinical and health economics research.
Methods implemented are based on Scott et al. (2022) <doi:10.1080/13696998.2022.2037917>
and Xia et al. (2024) <doi:10.14309/ajg.0000000000002901>.
Author: Maheshkumar Umbarkar [aut, cre, cph],
Safiuddin Shoeb Syed [ctb]
Maintainer: Maheshkumar Umbarkar <maheshubr30@gmail.com>
Diff between hcruR versions 1.0.0 dated 2025-09-01 and 1.0.1 dated 2026-08-30
DESCRIPTION | 6 MD5 | 14 NEWS.md | 8 R/utils.R | 791 ++++++++++++++++++++++++++-------------------------- build/vignette.rds |binary inst/doc/hcruR.Rmd | 300 +++++++++---------- inst/doc/hcruR.html | 118 +++---- vignettes/hcruR.Rmd | 300 +++++++++---------- 8 files changed, 768 insertions(+), 769 deletions(-)
Title: Extra Themes, Scales and Geoms for 'ggplot2'
Description: Some extra themes, geoms, and scales for 'ggplot2'.
Provides 'ggplot2' themes and scales that replicate the look of plots
by Edward Tufte, Stephen Few, 'Fivethirtyeight', 'The Economist', 'Stata',
'Excel', and 'The Wall Street Journal', among others.
Provides 'geoms' for Tufte's box plot and range frame.
Author: Jeffrey B. Arnold [aut, cre] ,
Gergely Daroczi [ctb],
Bo Werth [ctb],
Brian Weitzner [ctb],
Joshua Kunst [ctb],
Baptiste Auguie [ctb],
Bob Rudis [ctb],
Hadley Wickham [ctb] ,
Justin Talbot [ctb] ,
Joshua London [ctb]
Maintainer: Jeffrey B. Arnold <jeffrey.arnold@gmail.com>
Diff between ggthemes versions 5.2.0 dated 2025-11-30 and 6.0.0 dated 2026-08-30
DESCRIPTION | 25 +- MD5 | 229 ++++++++++++------------- NAMESPACE | 125 ++++++++----- NEWS.md | 78 ++++++++ R/banking.R | 144 ++++++++++++++- R/canva.R | 5 R/colorblind.R | 23 +- R/economist.R | 5 R/excel.R | 13 - R/few.R | 9 R/geom-rangeframe.R | 23 +- R/hc.R | 10 - R/pander.R | 4 R/scales.R | 6 R/shapes.R | 9 R/stat-fivenumber.R | 12 - R/stata.R | 22 -- R/tableau.R | 29 ++- R/theme-foundation.R | 22 +- R/utils.R | 39 +++- R/wsj.R | 2 build/stage23.rdb |binary data/ggthemes_data.rda |binary inst/WORDLIST | 11 + inst/examples/ex-bank_slopes.R | 15 + inst/examples/ex-colorblind.R | 1 inst/examples/ex-excel_new_pal.R | 4 inst/examples/ex-geom_rangeframe.R | 9 inst/examples/ex-scale_linetype_stata.R | 6 man/bank_plot.Rd |only man/bank_slopes.Rd | 74 ++++++-- man/calc_pal.Rd | 4 man/calc_shape_pal.Rd | 4 man/circlefill_shape_pal.Rd | 12 - man/cleveland_shape_pal.Rd | 12 - man/colorblind.Rd | 19 +- man/economist_pal.Rd | 4 man/excel_new_pal.Rd | 12 - man/excel_pal.Rd | 8 man/few_pal.Rd | 4 man/figures/README-scale_color_tableau-1.png |binary man/figures/README-scale_colorblind-1.png |binary man/figures/README-theme_calc-1.png |binary man/figures/README-theme_clean-1.png |binary man/figures/README-theme_economist-1.png |binary man/figures/README-theme_excel-1.png |binary man/figures/README-theme_excel_new-1.png |binary man/figures/README-theme_few-1.png |binary man/figures/README-theme_fivethirtyeight-1.png |binary man/figures/README-theme_igray-1.png |binary man/figures/README-theme_par-1.png |binary man/figures/README-theme_solarized-1.png |binary man/figures/README-theme_solarized_dark-1.png |binary man/figures/README-theme_solid-1.png |binary man/figures/README-theme_stata-1.png |binary man/figures/README-theme_wsj-1.png |binary man/fivethirtyeight_pal.Rd | 4 man/gdocs_pal.Rd | 4 man/geom_rangeframe.Rd | 21 +- man/geom_tufteboxplot.Rd | 6 man/ggthemes-package.Rd | 8 man/hc_pal.Rd | 4 man/palette_pander.Rd | 4 man/ptol_pal.Rd | 4 man/scale_calc.Rd | 4 man/scale_color_tableau.Rd | 10 - man/scale_colour_gradient2_tableau.Rd | 16 + man/scale_colour_gradient_tableau.Rd | 10 - man/scale_economist.Rd | 4 man/scale_excel.Rd | 8 man/scale_excel_new.Rd | 8 man/scale_few.Rd | 4 man/scale_fivethirtyeight.Rd | 4 man/scale_gdocs.Rd | 4 man/scale_hc.Rd | 4 man/scale_linetype_stata.Rd | 10 - man/scale_pander.Rd | 4 man/scale_ptol.Rd | 4 man/scale_shape_calc.Rd | 4 man/scale_shape_circlefill.Rd | 12 - man/scale_shape_cleveland.Rd | 12 - man/scale_shape_tableau.Rd | 4 man/scale_shape_tremmel.Rd | 12 - man/scale_solarized.Rd | 4 man/scale_wsj.Rd | 4 man/smart_digits.Rd | 2 man/solarized_pal.Rd | 4 man/stat_fivenumber.Rd | 2 man/stata_linetype_pal.Rd | 4 man/tableau_color_pal.Rd | 10 - man/tableau_gradient_pal.Rd | 10 - man/tableau_shape_pal.Rd | 4 man/theme_base.Rd | 12 - man/theme_clean.Rd | 12 - man/theme_economist.Rd | 2 man/theme_excel.Rd | 4 man/theme_excel_new.Rd | 4 man/theme_foundation.Rd | 30 ++- man/theme_igray.Rd | 12 - man/theme_par.Rd | 12 - man/theme_solid.Rd | 12 - man/tremmel_shape_pal.Rd | 12 - man/wsj_pal.Rd | 4 tests/testthat/Rplots.pdf |only tests/testthat/test-banking.R | 96 ++++++++++ tests/testthat/test-canva.R | 2 tests/testthat/test-clean.R |only tests/testthat/test-colorblind.R | 22 ++ tests/testthat/test-economist.R | 12 + tests/testthat/test-excel.R | 19 ++ tests/testthat/test-geom-rangeframe.R | 65 +++++++ tests/testthat/test-hc.R | 2 tests/testthat/test-pander.R | 38 ++++ tests/testthat/test-scales.R |only tests/testthat/test-shapes.R | 11 + tests/testthat/test-tableau.R | 15 + tests/testthat/test-theme-foundation.R |only tests/testthat/test-wsj_pal.R | 2 118 files changed, 1169 insertions(+), 501 deletions(-)
Title: Matrices for Repeat-Sales Price Indexes
Description: Calculate the matrices in
Shiller (1991, <doi:10.1016/S1051-1377(05)80028-2>) that serve as the
foundation for many repeat-sales price indexes.
Author: Steve Martin [aut, cre, cph]
Maintainer: Steve Martin <marberts@protonmail.com>
Diff between rsmatrix versions 0.2.11 dated 2026-08-01 and 0.3.0 dated 2026-08-30
rsmatrix-0.2.11/rsmatrix/LICENSE |only rsmatrix-0.3.0/rsmatrix/DESCRIPTION | 12 -- rsmatrix-0.3.0/rsmatrix/MD5 | 24 ++-- rsmatrix-0.3.0/rsmatrix/NEWS.md | 6 + rsmatrix-0.3.0/rsmatrix/R/rs_matrix.R | 23 +--- rsmatrix-0.3.0/rsmatrix/R/rs_var.R | 19 +-- rsmatrix-0.3.0/rsmatrix/README.md | 134 ++++++++++-------------- rsmatrix-0.3.0/rsmatrix/build/partial.rdb |binary rsmatrix-0.3.0/rsmatrix/inst/CITATION | 2 rsmatrix-0.3.0/rsmatrix/inst/REFERENCES.R |only rsmatrix-0.3.0/rsmatrix/inst/doc/rsmatrix.html | 2 rsmatrix-0.3.0/rsmatrix/man/rs_matrix.Rd | 17 +-- rsmatrix-0.3.0/rsmatrix/man/rs_var.Rd | 15 -- rsmatrix-0.3.0/rsmatrix/man/rsmatrix-package.Rd | 4 14 files changed, 109 insertions(+), 149 deletions(-)