Title: Automated Machine Learning and AI Agent Tools for Clinical
Prediction Modelling
Description: Provides a streamlined workflow for building, validating, and reporting clinical prediction models. Combines standard machine learning tools with an optional AI agent that recommends appropriate statistical methods, runs sensitivity analyses, and flags common pitfalls. Includes automated generation of reports aligned with TRIPOD+AI reporting guidance (Collins et al. (2024 <doi:10.1136/bmj-2023-078378>)) for reproducible, guideline-aligned research.
Author: Uwakmfon Paul [aut, cre, cph]
Maintainer: Uwakmfon Paul <uwakmfon31@gmail.com>
Diff between triageR versions 0.1.1 dated 2026-08-02 and 0.2.0 dated 2026-09-04
DESCRIPTION | 14 - MD5 | 53 ++++-- NAMESPACE | 4 NEWS.md | 17 ++ R/agent-review.R | 150 ++++++++++++------ R/launch-app.R |only R/model-fit-survival.R |only R/model-validate-survival.R |only R/model-validate.R | 73 ++++++++ R/report-tripod.R | 41 +++-- R/utils.R | 2 README.md | 111 +++++++++---- build/vignette.rds |binary inst/doc/triageR-breast-cancer.html | 211 +++++++++++++------------- inst/doc/triageR-intro.Rmd | 49 +----- inst/doc/triageR-intro.html | 155 +++++++++---------- inst/doc/triageR-survival-analysis.R |only inst/doc/triageR-survival-analysis.Rmd |only inst/doc/triageR-survival-analysis.html |only inst/shiny-app |only inst/templates/tripod_report.qmd | 83 ++++++++-- man/figures/README-example-model-2.png |only man/tr_agent_review.Rd | 10 - man/tr_fit_survival.Rd |only man/tr_launch_app.Rd |only man/tr_tripod_report.Rd | 17 +- man/tr_validate.Rd | 11 + man/tr_validate_survival.Rd |only man/triageR-package.Rd |only tests/testthat/helper-data.R | 7 tests/testthat/test-agent-review.R | 31 +++ tests/testthat/test-model-fit-survival.R |only tests/testthat/test-model-validate-survival.R |only vignettes/triageR-intro.Rmd | 49 +----- vignettes/triageR-survival-analysis.Rmd |only 35 files changed, 690 insertions(+), 398 deletions(-)
Title: Reparameterized Regression Models
Description: Provides estimation and data generation tools for several new regression models,
including the gamma, beta, inverse gamma, beta prime, log-normal and log-logistic
distributions. These models can be parameterized based on the mean, median, mode,
geometric mean and harmonic mean, except for the log-logistic model which is based
on alternative parametrizations.
For details, see Bourguignon and Gallardo (2025a) <doi:10.1016/j.chemolab.2025.105382> and
Bourguignon and Gallardo (2025b) <doi:10.1111/stan.70007>.
The package also implements higher-order likelihood inference through Skovgaard-adjusted
likelihood ratio statistics and predictive shrinkage estimators reparameterized
beta regression models.
Author: Diego Gallardo [aut, cre],
Marcelo Bourguignon [aut],
Marcia Brandao [aut],
Tiago Magalhaes [ctb],
Rafael Izbicki [ctb]
Maintainer: Diego Gallardo <dgallardo@ubiobio.cl>
Diff between rregm versions 1.3 dated 2026-07-21 and 1.4 dated 2026-09-04
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NAMESPACE | 2 +- NEWS.md | 4 ++++ R/fit.RLL.cens.R |only R/pLL4.R | 5 +++++ R/pLL5.R | 4 ++++ R/qLL4.R | 4 ++++ man/RLL.Rd | 2 ++ 9 files changed, 31 insertions(+), 11 deletions(-)
Title: Plug-in Kernel Density Estimation
Description: Kernel density estimation with global bandwidth selection via "plug-in".
Author: Eva Herrmann [aut] ,
Martin Maechler [cre, aut]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between plugdensity versions 0.8-5 dated 2023-12-08 and 0.8-6 dated 2026-09-04
ChangeLog | 4 ++++ DESCRIPTION | 22 +++++++++++++--------- MD5 | 4 ++-- 3 files changed, 19 insertions(+), 11 deletions(-)
Title: Open Source OCR Engine
Description: Bindings to 'Tesseract':
a powerful optical character recognition (OCR) engine that supports over 100 languages.
The engine is highly configurable in order to tune the detection algorithms and
obtain the best possible results.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between tesseract versions 5.2.5 dated 2026-01-26 and 5.3.0 dated 2026-09-04
DESCRIPTION | 6 +++--- MD5 | 46 +++++++++++++++++++++++++++++++++++++++++----- NEWS | 3 +++ build/vignette.rds |binary cleanup | 1 + inst/doc/intro.html | 18 +++++++++--------- inst/tessdata |only 7 files changed, 57 insertions(+), 17 deletions(-)
Title: Discrete Choice Models for Economic Applications
Description: Fast estimation of discrete-choice models for applied economics.
Frequentist likelihoods, analytical gradients, and Hessians are implemented
in C++ with 'OpenMP' parallelism, scaling efficiently to specifications with
many alternative-specific constants. Compiled Gibbs samplers provide Bayesian
multinomial probit and hierarchical models. Post-estimation routines cover
predicted shares, own- and cross-price elasticities, diversion ratios,
willingness to pay, and welfare counterfactuals. Supports multinomial logit
('MNL'), mixed logit ('MXL'), nested logit ('NL'), Bayesian multinomial probit
('MNP'), and hierarchical Bayesian multinomial logit and probit ('HMNL',
'HMNP').
Author: Fernando Cordeiro [aut, cre, cph]
Maintainer: Fernando Cordeiro <fernandolpcordeiro@gmail.com>
Diff between choicer versions 0.2.0 dated 2026-07-13 and 0.2.1 dated 2026-09-04
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 21 +++++++++++++++++++++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/mnp.html | 4 ++-- inst/doc/mxl.html | 4 ++-- inst/doc/wesml.html | 4 ++-- src/choicer.h | 16 ++++++++++++++++ src/hmnlogit.cpp | 8 ++------ src/hmnprobit.cpp | 4 +--- src/mnprobit.cpp | 8 ++------ src/utils.cpp | 4 ++-- 13 files changed, 65 insertions(+), 38 deletions(-)
More information about AugmentedPooledRCBD at CRAN
Permanent link
Title: Reconstruct Raw Data from Summary Statistics
Description: Reconstructs all possible raw data that could have led to reported
summary statistics. Provides a wrapper for the 'Rust' implementation of the
'CLOSURE' algorithm.
Author: Lukas Jung [aut, cre],
Nathanael Larigaldie [ctb]
Maintainer: Lukas Jung <jung-lukas@gmx.net>
Diff between unsum versions 0.2.0 dated 2025-06-19 and 0.3.0 dated 2026-09-04
unsum-0.2.0/unsum/R/horns-analyze.R |only unsum-0.2.0/unsum/R/plot.R |only unsum-0.2.0/unsum/man/closure_count_initial.Rd |only unsum-0.2.0/unsum/man/closure_horns_analyze.Rd |only unsum-0.3.0/unsum/DESCRIPTION | 29 unsum-0.3.0/unsum/MD5 | 101 - unsum-0.3.0/unsum/NAMESPACE | 10 unsum-0.3.0/unsum/NEWS.md | 74 unsum-0.3.0/unsum/R/compare-sprite-closure.R |only unsum-0.3.0/unsum/R/constants.R |only unsum-0.3.0/unsum/R/count.R | 73 unsum-0.3.0/unsum/R/demo-plot.R |only unsum-0.3.0/unsum/R/doc-helpers.R |only unsum-0.3.0/unsum/R/extendr-wrappers.R | 6 unsum-0.3.0/unsum/R/fn-factory.R |only unsum-0.3.0/unsum/R/fn-formals.R |only unsum-0.3.0/unsum/R/generate-basic.R |only unsum-0.3.0/unsum/R/generate.R | 334 +-- unsum-0.3.0/unsum/R/horns-corrected.R |only unsum-0.3.0/unsum/R/horns-plot-for-export.R |only unsum-0.3.0/unsum/R/horns.R | 147 + unsum-0.3.0/unsum/R/plot-bar-basic.R |only unsum-0.3.0/unsum/R/plot-bar.R |only unsum-0.3.0/unsum/R/plot-ecdf-basic.R |only unsum-0.3.0/unsum/R/plot-horns-histogram-basic.R |only unsum-0.3.0/unsum/R/predicates-basic.R |only unsum-0.3.0/unsum/R/read-write-basic.R |only unsum-0.3.0/unsum/R/read-write.R | 300 --- unsum-0.3.0/unsum/R/s7-result.R |only unsum-0.3.0/unsum/R/standalone-last-export.R |only unsum-0.3.0/unsum/R/standalone-new-wrapper.R |only unsum-0.3.0/unsum/R/sysdata.rda |binary unsum-0.3.0/unsum/R/utils.R | 948 +++++++--- unsum-0.3.0/unsum/R/zzz.R |only unsum-0.3.0/unsum/README.md | 99 - unsum-0.3.0/unsum/build/vignette.rds |binary unsum-0.3.0/unsum/cleanup |only unsum-0.3.0/unsum/cleanup.win |only unsum-0.3.0/unsum/configure | 2 unsum-0.3.0/unsum/inst/doc/unsum.R | 6 unsum-0.3.0/unsum/inst/doc/unsum.Rmd | 40 unsum-0.3.0/unsum/inst/doc/unsum.html | 188 - unsum-0.3.0/unsum/man/closure_count_all.Rd |only unsum-0.3.0/unsum/man/closure_gauge_complexity.Rd | 6 unsum-0.3.0/unsum/man/closure_generate.Rd | 149 + unsum-0.3.0/unsum/man/closure_plot_bar.Rd | 75 unsum-0.3.0/unsum/man/closure_plot_ecdf.Rd | 86 unsum-0.3.0/unsum/man/closure_write.Rd | 103 - unsum-0.3.0/unsum/man/demo-plot.Rd |only unsum-0.3.0/unsum/man/figures/README-unnamed-chunk-2-1.png |binary unsum-0.3.0/unsum/man/figures/README-unnamed-chunk-3-1.png |binary unsum-0.3.0/unsum/man/horns-frequency.Rd |only unsum-0.3.0/unsum/man/horns.Rd | 101 - unsum-0.3.0/unsum/man/sprite_generate.Rd |only unsum-0.3.0/unsum/man/sprite_plot_bar.Rd |only unsum-0.3.0/unsum/man/sprite_write.Rd |only unsum-0.3.0/unsum/src/rust/Cargo.lock | 1228 ++++++++++++- unsum-0.3.0/unsum/src/rust/Cargo.toml | 8 unsum-0.3.0/unsum/src/rust/src/lib.rs | 477 ++++- unsum-0.3.0/unsum/src/rust/vendor-config.toml | 5 unsum-0.3.0/unsum/src/rust/vendor.tar.xz |binary unsum-0.3.0/unsum/tests/testthat/helper.R | 191 ++ unsum-0.3.0/unsum/tests/testthat/test-frequency-dist.R |only unsum-0.3.0/unsum/tests/testthat/test-generate.R | 180 + unsum-0.3.0/unsum/tests/testthat/test-horns.R | 33 unsum-0.3.0/unsum/tests/testthat/test-read-write.R |only unsum-0.3.0/unsum/tools/config.R | 1 unsum-0.3.0/unsum/vignettes/unsum.Rmd | 40 68 files changed, 3804 insertions(+), 1236 deletions(-)
Title: 'OpenStreetMap' API
Description: Interface to 'OpenStreetMap API' for fetching and saving data
from/to the 'OpenStreetMap' database
(<https://wiki.openstreetmap.org/wiki/API_v0.6>).
Author: Joan Maspons [aut, cre, cph] ,
Jon Harmon [rev] ,
Carlos Camara [rev]
Maintainer: Joan Maspons <joanmaspons@gmail.com>
Diff between osmapiR versions 0.2.5 dated 2026-02-15 and 0.2.6 dated 2026-09-04
osmapiR-0.2.5/osmapiR/tests/testthat/mock_edit_gpx/osm.org/api/0.6/gpx-bb8430-POST.txt |only osmapiR-0.2.5/osmapiR/tests/testthat/mock_edit_gpx/osm.org/api/0.6/gpx/2846-1677ce-PUT.html |only osmapiR-0.2.5/osmapiR/tests/testthat/mock_edit_gpx/osm.org/api/0.6/gpx/2846-DELETE.html |only osmapiR-0.2.5/osmapiR/tests/testthat/mock_edit_gpx/osm.org/api/0.6/gpx/2846.xml |only osmapiR-0.2.6/osmapiR/DESCRIPTION | 9 osmapiR-0.2.6/osmapiR/MD5 | 142 +++++----- osmapiR-0.2.6/osmapiR/NEWS.md | 6 osmapiR-0.2.6/osmapiR/R/R_to_xml.R | 11 osmapiR-0.2.6/osmapiR/R/osm_query_changesets.R | 2 osmapiR-0.2.6/osmapiR/R/osmapi_changesets.R | 12 osmapiR-0.2.6/osmapiR/R/osmapi_elements.R | 8 osmapiR-0.2.6/osmapiR/R/osmapi_gps_traces.R | 10 osmapiR-0.2.6/osmapiR/R/osmapi_map_notes.R | 15 - osmapiR-0.2.6/osmapiR/R/osmapi_miscellaneous.R | 14 osmapiR-0.2.6/osmapiR/README.md | 2 osmapiR-0.2.6/osmapiR/build/vignette.rds |binary osmapiR-0.2.6/osmapiR/inst/WORDLIST | 3 osmapiR-0.2.6/osmapiR/inst/doc/osmapiR.html | 33 +- osmapiR-0.2.6/osmapiR/man/API_configuration.Rd | 10 osmapiR-0.2.6/osmapiR/man/authenticate_osmapiR.Rd | 10 osmapiR-0.2.6/osmapiR/man/osm_api_versions.Rd | 10 osmapiR-0.2.6/osmapiR/man/osm_bbox_objects.Rd | 14 osmapiR-0.2.6/osmapiR/man/osm_capabilities.Rd | 14 osmapiR-0.2.6/osmapiR/man/osm_close_note.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_comment_changeset_discussion.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_create_changeset.Rd | 4 osmapiR-0.2.6/osmapiR/man/osm_create_comment_note.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_create_gpx.Rd | 10 osmapiR-0.2.6/osmapiR/man/osm_create_note.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_create_object.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_create_user_block.Rd | 14 osmapiR-0.2.6/osmapiR/man/osm_delete_gpx.Rd | 6 osmapiR-0.2.6/osmapiR/man/osm_delete_note.Rd | 16 - osmapiR-0.2.6/osmapiR/man/osm_delete_object.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_details_logged_user.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_diff_upload_changeset.Rd | 18 - osmapiR-0.2.6/osmapiR/man/osm_download_changeset.Rd | 18 - osmapiR-0.2.6/osmapiR/man/osm_feed_notes.Rd | 10 osmapiR-0.2.6/osmapiR/man/osm_get_changesets.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_get_data_gpx.Rd | 14 osmapiR-0.2.6/osmapiR/man/osm_get_gpx_metadata.Rd | 10 osmapiR-0.2.6/osmapiR/man/osm_get_notes.Rd | 12 osmapiR-0.2.6/osmapiR/man/osm_get_objects.Rd | 14 osmapiR-0.2.6/osmapiR/man/osm_get_points_gps.Rd | 10 osmapiR-0.2.6/osmapiR/man/osm_get_user_blocks.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_get_user_details.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_hide_comment_changeset_discussion.Rd | 16 - osmapiR-0.2.6/osmapiR/man/osm_history_object.Rd | 14 osmapiR-0.2.6/osmapiR/man/osm_list_active_user_blocks.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_list_gpxs.Rd | 10 osmapiR-0.2.6/osmapiR/man/osm_permissions.Rd | 10 osmapiR-0.2.6/osmapiR/man/osm_preferences_user.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_query_changesets.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_read_bbox_notes.Rd | 12 osmapiR-0.2.6/osmapiR/man/osm_redaction_object.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_relations_object.Rd | 14 osmapiR-0.2.6/osmapiR/man/osm_search_comment_changeset_discussion.Rd | 10 osmapiR-0.2.6/osmapiR/man/osm_search_notes.Rd | 10 osmapiR-0.2.6/osmapiR/man/osm_subscribe_changeset_discussion.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_update_gpx.Rd | 6 osmapiR-0.2.6/osmapiR/man/osm_update_object.Rd | 8 osmapiR-0.2.6/osmapiR/man/osm_ways_node.Rd | 14 osmapiR-0.2.6/osmapiR/man/osmapiR-package.Rd | 7 osmapiR-0.2.6/osmapiR/man/osmapi_objects.Rd | 12 osmapiR-0.2.6/osmapiR/man/osmchange_create.Rd | 12 osmapiR-0.2.6/osmapiR/man/osmchange_delete.Rd | 12 osmapiR-0.2.6/osmapiR/man/osmchange_modify.Rd | 12 osmapiR-0.2.6/osmapiR/man/st_as_sf.Rd | 4 osmapiR-0.2.6/osmapiR/man/tags_list-wide.Rd | 2 osmapiR-0.2.6/osmapiR/tests/testthat/_snaps/changesets.md | 1 osmapiR-0.2.6/osmapiR/tests/testthat/_snaps/map_notes.md | 1 osmapiR-0.2.6/osmapiR/tests/testthat/mock_edit_gpx/osm.org/api/0.6/gpx-f64b72-POST.txt |only osmapiR-0.2.6/osmapiR/tests/testthat/mock_edit_gpx/osm.org/api/0.6/gpx/5583-3f14c1-PUT.html |only osmapiR-0.2.6/osmapiR/tests/testthat/mock_edit_gpx/osm.org/api/0.6/gpx/5583-DELETE.html |only osmapiR-0.2.6/osmapiR/tests/testthat/mock_edit_gpx/osm.org/api/0.6/gpx/5583.xml |only osmapiR-0.2.6/osmapiR/tests/testthat/test-elements.R | 20 - 76 files changed, 423 insertions(+), 385 deletions(-)
Title: Predict with 'tidymodels' Workflows in Databases
Description: Turn 'tidymodels' workflows into objects containing the
sufficient sequential equations to perform predictions. These smaller
objects allow for low dependency prediction locally or directly in
databases.
Author: Emil Hvitfeldt [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between orbital versions 0.5.1 dated 2026-03-13 and 0.7.0 dated 2026-09-04
DESCRIPTION | 23 + MD5 | 127 ++++++---- NAMESPACE | 1 NEWS.md | 88 +++++++ R/aaa.R | 6 R/classification-helpers.R | 76 ++++++ R/estimate-size.R | 41 ++- R/fallback-routing.R |only R/model-catboost.R | 50 ---- R/model-earth.R | 8 R/model-glm.R | 4 R/model-glmnet.R | 24 -- R/model-lightgbm.R | 53 +--- R/model-partykit.R | 6 R/model-randomForest.R | 26 -- R/model-ranger.R | 26 -- R/model-rpart.R | 6 R/model-xgboost.R | 105 +------- R/orbital.R | 44 ++- R/parsnip.R | 125 +++++++--- R/separate-trees.R |only R/utils.R | 6 build/vignette.rds |binary inst/doc/separate-trees.Rmd | 23 + inst/doc/separate-trees.html | 81 ++++++ inst/doc/supported-models.R | 30 ++ inst/doc/supported-models.Rmd | 42 +++ inst/doc/supported-models.html | 283 +++++++++++++++++++----- man/estimate_orbital_size.Rd | 16 + man/orbital.Rd | 29 ++ man/orbital_inline.Rd | 2 man/reexports.Rd | 2 tests/testthat/_snaps/classification-helpers.md |only tests/testthat/_snaps/dt.md | 21 + tests/testthat/_snaps/estimate-size.md | 19 + tests/testthat/_snaps/fallback-routing.md |only tests/testthat/_snaps/model-C50.md |only tests/testthat/_snaps/model-aorsf.md |only tests/testthat/_snaps/model-baguette.md |only tests/testthat/_snaps/model-dbarts.md |only tests/testthat/_snaps/model-h2o.md |only tests/testthat/_snaps/model-mda.md |only tests/testthat/_snaps/model-mixOmics.md |only tests/testthat/_snaps/model-naivebayes.md |only tests/testthat/_snaps/model-partykit.md |only tests/testthat/_snaps/model-xrf.md |only tests/testthat/_snaps/parsnip.md | 35 ++ tests/testthat/_snaps/sql.md | 111 ++++++--- tests/testthat/derby.log | 12 - tests/testthat/helper-h2o.R |only tests/testthat/helper-utils.R | 42 +++ tests/testthat/test-adjust_numeric_range.R | 11 tests/testthat/test-classification-helpers.R | 111 +++++++++ tests/testthat/test-dt.R | 60 +++++ tests/testthat/test-estimate-size.R | 32 ++ tests/testthat/test-fallback-routing.R |only tests/testthat/test-json.R | 64 +++++ tests/testthat/test-model-C50.R |only tests/testthat/test-model-LiblineaR.R |only tests/testthat/test-model-MASS.R |only tests/testthat/test-model-aorsf.R |only tests/testthat/test-model-baguette.R |only tests/testthat/test-model-dbarts.R |only tests/testthat/test-model-glm.R | 13 + tests/testthat/test-model-h2o.R |only tests/testthat/test-model-kernlab.R |only tests/testthat/test-model-mda.R |only tests/testthat/test-model-mixOmics.R |only tests/testthat/test-model-naivebayes.R |only tests/testthat/test-model-nnet.R |only tests/testthat/test-model-nullmodel.R |only tests/testthat/test-model-partykit.R | 45 +++ tests/testthat/test-model-sda.R |only tests/testthat/test-model-sparsediscrim.R |only tests/testthat/test-model-xrf.R |only tests/testthat/test-orbital.R | 21 + tests/testthat/test-parsnip.R | 56 ++++ tests/testthat/test-separate-trees.R |only tests/testthat/test-sql.R | 64 +++++ vignettes/separate-trees.Rmd | 23 + vignettes/supported-models.Rmd | 42 +++ 81 files changed, 1659 insertions(+), 476 deletions(-)
Title: Clinical Trial Simulator
Description: Simulate phase II and/or phase III clinical trials. It supports various types of endpoints and adaptive strategies. Tools for carrying out graphical testing procedure and combination test under group sequential design are also provided.
Author: Han Zhang [cre, aut]
Maintainer: Han Zhang <zhangh.ustc@gmail.com>
Diff between TrialSimulator versions 1.20.1 dated 2026-06-15 and 1.35.8 dated 2026-09-04
TrialSimulator-1.20.1/TrialSimulator/R/default_action.R |only TrialSimulator-1.35.8/TrialSimulator/DESCRIPTION | 14 TrialSimulator-1.35.8/TrialSimulator/MD5 | 235 TrialSimulator-1.35.8/TrialSimulator/NAMESPACE | 8 TrialSimulator-1.35.8/TrialSimulator/NEWS.md | 248 TrialSimulator-1.35.8/TrialSimulator/R/Arm.R | 6 TrialSimulator-1.35.8/TrialSimulator/R/Arms.R | 130 TrialSimulator-1.35.8/TrialSimulator/R/Controller.R | 2 TrialSimulator-1.35.8/TrialSimulator/R/Controllers.R | 215 TrialSimulator-1.35.8/TrialSimulator/R/CorrelatedPfsAndOs3.R | 8 TrialSimulator-1.35.8/TrialSimulator/R/CorrelatedPfsAndOs4.R | 12 TrialSimulator-1.35.8/TrialSimulator/R/Endpoint.R | 2 TrialSimulator-1.35.8/TrialSimulator/R/Endpoints.R | 63 TrialSimulator-1.35.8/TrialSimulator/R/GraphicalTesting.R | 31 TrialSimulator-1.35.8/TrialSimulator/R/GroupSequentialTest.R | 2 TrialSimulator-1.35.8/TrialSimulator/R/Listener.R | 2 TrialSimulator-1.35.8/TrialSimulator/R/Listeners.R | 108 TrialSimulator-1.35.8/TrialSimulator/R/Milestones.R | 231 TrialSimulator-1.35.8/TrialSimulator/R/PiecewiseConstantExponentialRNG.R | 4 TrialSimulator-1.35.8/TrialSimulator/R/Regimens.R | 63 TrialSimulator-1.35.8/TrialSimulator/R/StaggeredRecruiter.R | 218 TrialSimulator-1.35.8/TrialSimulator/R/Trial.R | 20 TrialSimulator-1.35.8/TrialSimulator/R/Trials.R | 5018 ++++++---- TrialSimulator-1.35.8/TrialSimulator/R/add_arms.R | 10 TrialSimulator-1.35.8/TrialSimulator/R/conditional_power.R |only TrialSimulator-1.35.8/TrialSimulator/R/crossover.R | 7 TrialSimulator-1.35.8/TrialSimulator/R/event_number_reestimation.R |only TrialSimulator-1.35.8/TrialSimulator/R/filter_conditions_mask.R |only TrialSimulator-1.35.8/TrialSimulator/R/fitCoxph.R | 2 TrialSimulator-1.35.8/TrialSimulator/R/fitFarringtonManning.R | 2 TrialSimulator-1.35.8/TrialSimulator/R/fitLogrank.R | 119 TrialSimulator-1.35.8/TrialSimulator/R/getConditionalPowerOutput.R |only TrialSimulator-1.35.8/TrialSimulator/R/milestone.R | 2 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More information about TrialSimulator at CRAN
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Title: Protracted Birth-Death Model of Diversification
Description: Conducts maximum likelihood analysis and simulation of the
protracted birth-death model of diversification. See
Etienne, R.S. & J. Rosindell 2012 <doi:10.1093/sysbio/syr091>;
Lambert, A., H. Morlon & R.S. Etienne 2014, <doi:10.1007/s00285-014-0767-x>;
Etienne, R.S., H. Morlon & A. Lambert 2014, <doi:10.1111/evo.12433>.
Author: Rampal S. Etienne [aut, cre] ,
Bart Haegeman [aut] ,
Richel J.C. Bilderbeek [ctb] ,
Thijs Janzen [ctb] ,
Raphael Scherrer [ctb]
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
Diff between PBD versions 1.4 dated 2017-05-04 and 1.6 dated 2026-09-04
PBD-1.4/PBD/man/PBD-package.Rd |only PBD-1.6/PBD/DESCRIPTION | 58 - PBD-1.6/PBD/MD5 | 107 + PBD-1.6/PBD/NAMESPACE | 9 PBD-1.6/PBD/R/RcppExports.R |only PBD-1.6/PBD/R/pbd_LR.R | 126 ++ PBD-1.6/PBD/R/pbd_ML.R | 107 + PBD-1.6/PBD/R/pbd_bootstrap.R | 136 +- PBD-1.6/PBD/R/pbd_bootstrap_sim.R | 148 +- PBD-1.6/PBD/R/pbd_brts_density.R | 38 PBD-1.6/PBD/R/pbd_durspec_cumdensity.R | 27 PBD-1.6/PBD/R/pbd_durspec_density.R | 26 PBD-1.6/PBD/R/pbd_durspec_mean.R | 187 +++ PBD-1.6/PBD/R/pbd_durspec_mode.R | 24 PBD-1.6/PBD/R/pbd_durspec_moment.R | 26 PBD-1.6/PBD/R/pbd_durspec_quantile.R | 25 PBD-1.6/PBD/R/pbd_durspec_var.R | 24 PBD-1.6/PBD/R/pbd_incipient.R | 14 PBD-1.6/PBD/R/pbd_loglik.R | 65 + PBD-1.6/PBD/R/pbd_loglik_choosepar.R | 2 PBD-1.6/PBD/R/pbd_numspec.R |only PBD-1.6/PBD/R/pbd_numspec_vec.R |only PBD-1.6/PBD/R/pbd_numspec_vec2.R |only PBD-1.6/PBD/R/pbd_sim.R | 291 +++-- PBD-1.6/PBD/R/pbd_sim_checked.R |only PBD-1.6/PBD/R/pbd_sim_cpp.R | 60 + PBD-1.6/PBD/R/pbd_utils.R | 461 +++++--- PBD-1.6/PBD/build/vignette.rds |binary PBD-1.6/PBD/inst/doc/PBD_ML_demo.R | 20 PBD-1.6/PBD/inst/doc/PBD_ML_demo.Rmd | 2 PBD-1.6/PBD/inst/doc/PBD_ML_demo.html | 1127 ++++++++++++--------- PBD-1.6/PBD/man/pbd_LR.Rd | 218 ++-- PBD-1.6/PBD/man/pbd_ML.Rd | 194 ++- PBD-1.6/PBD/man/pbd_bootstrap.Rd | 215 ++-- PBD-1.6/PBD/man/pbd_brts_density.Rd | 86 + PBD-1.6/PBD/man/pbd_durspec_cumdensity.Rd | 55 - PBD-1.6/PBD/man/pbd_durspec_density.Rd | 54 - PBD-1.6/PBD/man/pbd_durspec_mean.Rd | 49 PBD-1.6/PBD/man/pbd_durspec_mean_impl.Rd |only PBD-1.6/PBD/man/pbd_durspec_mode.Rd | 49 PBD-1.6/PBD/man/pbd_durspec_moment.Rd | 54 - PBD-1.6/PBD/man/pbd_durspec_quantile.Rd | 53 PBD-1.6/PBD/man/pbd_durspec_var.Rd | 49 PBD-1.6/PBD/man/pbd_loglik.Rd | 118 +- PBD-1.6/PBD/man/pbd_mean_durspec.Rd |only PBD-1.6/PBD/man/pbd_mean_durspecs.Rd |only PBD-1.6/PBD/man/pbd_numspec_mean.Rd |only PBD-1.6/PBD/man/pbd_numspec_median.Rd |only PBD-1.6/PBD/man/pbd_numspec_quantile.Rd |only PBD-1.6/PBD/man/pbd_numspec_vec.Rd |only PBD-1.6/PBD/man/pbd_numspec_vec2.Rd |only PBD-1.6/PBD/man/pbd_sim.Rd | 125 +- PBD-1.6/PBD/man/pbd_sim_checked.Rd |only PBD-1.6/PBD/man/pbd_sim_cpp.Rd | 100 + PBD-1.6/PBD/src |only PBD-1.6/PBD/tests/testthat.R |only PBD-1.6/PBD/tests/testthat/test-pbd_ML.R |only PBD-1.6/PBD/tests/testthat/test-pbd_durspec_mean.R |only PBD-1.6/PBD/tests/testthat/test-pbd_mean_durspec.R |only PBD-1.6/PBD/tests/testthat/test-pbd_numspec_vec.R |only PBD-1.6/PBD/tests/testthat/test-pbd_sim.R |only PBD-1.6/PBD/tests/testthat/test-pbd_sim_checked.R |only PBD-1.6/PBD/tests/testthat/test-sampletree.R |only PBD-1.6/PBD/tests/testthat/test-test_PBD.R | 30 PBD-1.6/PBD/vignettes/PBD_ML_demo.Rmd | 2 65 files changed, 3030 insertions(+), 1531 deletions(-)
Title: R Wrapper for the 'funz-fz' Parametric Simulation Framework
Description: Provides R bindings to the 'funz-fz' Python package using
'reticulate'. The 'fz' framework wraps arbitrary simulation codes to run
parameter sweeps, design-of-experiments studies, and iterative
algorithm-driven analyses by substituting variable placeholders in text
input files and collecting outputs into data frames. Calculators can run
locally (shell), over SSH, or on 'SLURM' clusters.
See <https://github.com/Funz/fz> for the underlying framework.
Author: Yann Richet [aut, cre]
Maintainer: Yann Richet <yann.richet@asnr.fr>
Diff between fz versions 1.1 dated 2026-06-29 and 1.2.0 dated 2026-09-04
DESCRIPTION | 8 MD5 | 50 ++-- NEWS.md | 89 +++++++ R/core-functions.R | 238 ++++++++++++++++++-- R/install.R | 59 +++-- R/zzz.R | 13 + README.md | 61 +++++ build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/modelica-examples.R | 102 -------- inst/doc/modelica-examples.Rmd | 104 +++++++- inst/doc/modelica-examples.html | 316 +++++++++++++++------------ inst/examples |only man/fz-package.Rd | 5 man/fz_available.Rd | 9 man/fz_install.Rd | 16 + man/fzc.Rd | 13 + man/fzd.Rd | 127 +++++++++- man/fzi.Rd | 11 man/fzo.Rd | 28 ++ man/fzr.Rd | 32 ++ man/install.Rd | 8 man/install_algorithm.Rd | 10 man/install_model.Rd | 10 tests/testthat/test-fzd-calculators-forced.R |only tests/testthat/test-perfectgas-example.R |only vignettes/modelica-examples.Rmd | 104 +++++++- 27 files changed, 1047 insertions(+), 369 deletions(-)
Title: FDA Safety Tables and Figures
Description: Provides implementations of safety tables and figures
recommended by the FDA (U.S. Food and Drug Administration) for
clinical trial reporting. Functions generate standard outputs for
adverse events, laboratory abnormalities, vital signs, exposure, and
other safety domains following the FDA's Safety Reporting guidelines.
Outputs are built on the 'gtsummary', 'cards', and 'cardx' frameworks,
enabling reproducible and submission-ready clinical trial safety
summaries.
Author: Pawel Rucki [ctb],
Abinaya Yogasekaram [aut] ,
Joe Zhu [cre] ,
Daniel D. Sjoberg [ctb] ,
Emily de la Rua [aut] ,
Davide Garolini [aut] ,
Vincent Shen [aut],
Benoit Falquet [ctb] ,
Lluis Revilla Sancho [ctb] ,
Huan Lu [ctb],
Alex Assuied [ctb],
Yoshit [...truncated...]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between cardinalfda versions 0.2.0 dated 2026-08-04 and 0.3.0 dated 2026-09-04
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cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_14.R | 148 - cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_15.R | 184 +- cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_16.R | 184 +- cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_17.R | 190 +- cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_18.R | 190 +- cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_20.R | 242 +- cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_21.R | 338 +-- cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_22.R | 326 +-- cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_32.R | 382 ++-- cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_33.R | 398 ++-- cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_34.R | 196 +- cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_35.R | 416 ++-- cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_36.R | 148 - cardinalfda-0.3.0/cardinalfda/R/archive/fda-table_38.R | 192 +- cardinalfda-0.3.0/cardinalfda/R/argument_convention.R | 148 - cardinalfda-0.3.0/cardinalfda/R/cardinalfda.R |only cardinalfda-0.3.0/cardinalfda/R/run_template.R |only cardinalfda-0.3.0/cardinalfda/R/utils.R | 206 +- cardinalfda-0.3.0/cardinalfda/inst/WORDLIST | 58 cardinalfda-0.3.0/cardinalfda/inst/create_tests.r | 48 cardinalfda-0.3.0/cardinalfda/inst/template_test.R | 16 cardinalfda-0.3.0/cardinalfda/inst/templates |only cardinalfda-0.3.0/cardinalfda/man/alt_counts_df_preproc.Rd | 60 cardinalfda-0.3.0/cardinalfda/man/argument_convention.Rd | 242 +- cardinalfda-0.3.0/cardinalfda/man/assert_flag_variables.Rd | 46 cardinalfda-0.3.0/cardinalfda/man/basic_table_annot.Rd | 48 cardinalfda-0.3.0/cardinalfda/man/cardinalfda-package.Rd | 91 - cardinalfda-0.3.0/cardinalfda/man/run_template.Rd |only cardinalfda-0.3.0/cardinalfda/man/split_cols_by_arm.Rd | 76 cardinalfda-0.3.0/cardinalfda/tests/testthat.R | 14 cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_02.md | 440 ++-- cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_03.md | 104 - cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_07.md | 463 +++-- cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_08.md | 208 +- cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_09.md | 2 cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_10.md | 52 cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_11.md | 26 cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_12.md | 84 cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_13.md | 14 cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_15.md | 104 - cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_17.md | 64 cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_18.md | 14 cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_33.md | 130 - cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_34.md | 78 cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_44.md | 78 cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_45.md | 78 cardinalfda-0.3.0/cardinalfda/tests/testthat/_snaps/fda-table_50.md | 520 ++--- cardinalfda-0.3.0/cardinalfda/tests/testthat/test-custom.R | 89 - cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_02.R | 28 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_03.R | 84 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_04.R | 56 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_06.R | 116 - cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_07.R | 147 - cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_08.R | 70 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_09.R | 76 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_10.R | 45 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_11.R | 72 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_12.R | 59 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_13.R | 68 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_14.R | 63 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_15.R | 51 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_17.R | 77 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_18.R | 125 - cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_29.R | 81 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_33.R | 81 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_34.R | 82 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_36.R | 88 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_37.R | 85 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_38.R | 79 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_43.R | 79 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_44.R | 82 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_45.R | 82 cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_50.R | 131 - cardinalfda-0.3.0/cardinalfda/tests/testthat/test-fda-table_51.R | 105 - cardinalfda-0.3.0/cardinalfda/tests/testthat/test-run_template.R |only cardinalfda-0.3.0/cardinalfda/tests/testthat/test-table-roche_lbt01.R | 104 - cardinalfda-0.3.0/cardinalfda/tests/testthat/test-utils.R |only 100 files changed, 7824 insertions(+), 9085 deletions(-)
Title: Reproducible Assessment of Disability Course in Multiple
Sclerosis
Description: Analyse disability course in multiple sclerosis (MS) from
longitudinal data. The package provides a flexible framework for
identifying disability events under user-specified criteria, allowing
adaptation to different study designs and endpoints. Tools are included
to facilitate transparent and reproducible reporting of the settings
used in the analysis. For consensus-based recommendations on endpoint
calculation and use of the package, see Montobbio et al. (2026)
<doi:10.1177/13524585261478492>. For the original description of the
computational framework and illustrative applications, see Montobbio
et al. (2024) <doi:10.1177/13524585241243157>.
Author: Noemi Montobbio [aut, cre] ,
Francesca Bovis [rev],
Luca Carmisciano [rev]
Maintainer: Noemi Montobbio <noemi.montobbio@gmail.com>
Diff between msprog versions 1.0.0 dated 2026-06-23 and 1.0.1 dated 2026-09-04
DESCRIPTION | 15 +++++++---- MD5 | 34 ++++++++++++------------- R/MSprog.R | 25 +++++++++++++++---- R/MSprogOutput.R | 6 +++- R/relapse_indep_from_bounds.R | 2 - inst/CITATION | 45 ++++++++++++++++++++++------------ inst/doc/vignette0.R | 4 +-- inst/doc/vignette0.Rmd | 8 +++--- inst/doc/vignette0.html | 50 +++++++++++++++++++------------------- inst/doc/vignette_PIRA.R | 2 - inst/doc/vignette_PIRA.Rmd | 2 - inst/doc/vignette_PIRA.html | 12 ++++----- inst/doc/vignette_time2event.html | 22 ++++++++-------- man/MSprog.Rd | 2 + man/MSprogOutput.Rd | 6 +++- man/relapse_indep_from_bounds.Rd | 2 - vignettes/vignette0.Rmd | 8 +++--- vignettes/vignette_PIRA.Rmd | 2 - 18 files changed, 145 insertions(+), 102 deletions(-)
Title: Clustering Large Datasets by Merging K-Means Solutions
Description: Fast clustering of large datasets by hierarchically merging
components of a K-means solution based on the pairwise overlap between
the Gaussian mixture components implied by the K-means partition, as
proposed by Melnykov and Michael (2020) <doi:10.1007/s00357-019-09314-8>.
Implements the DEMP-K merging algorithm with single, Ward's, average,
and complete linkages, the overlap map display for selecting the number
of clusters, four K-means variants corresponding to Gaussian mixtures
with spherical or elliptical, homoscedastic or heteroscedastic
components, and a tool for selecting the number of K-means components.
Author: Aqi Dong [aut, cre] ,
Volodymyr Melnykov [aut],
Yang-Li Liao [aut],
Peng Li [aut],
Xuejian Li [aut]
Maintainer: Aqi Dong <donga2@erau.edu>
Diff between MergeKmeans versions 0.2.0 dated 2026-07-19 and 0.3.0 dated 2026-09-04
DESCRIPTION | 6 +- MD5 | 38 ++++++------- NEWS.md | 50 +++++++++++++++++ R/cem.R | 80 ++++++++++++++++++---------- R/chooseK.R | 50 ++++++++++++----- R/init.R | 103 ++++++++++++++++++++++++++---------- R/mergekm.R | 91 ++++++++++++++++++++------------ R/overlap.R | 110 ++++++++++++++++++++++++--------------- README.md | 22 +++---- inst/doc/MergeKmeans.R | 12 ++++ inst/doc/MergeKmeans.Rmd | 37 +++++++++++++ inst/doc/MergeKmeans.html | 69 +++++++++++++++++++----- man/MergeKmeans.Rd | 63 +++++++++++++--------- man/chooseK.Rd | 15 ++++- man/pairwise_overlap.Rd | 13 ++-- man/recut.Rd | 4 + tests/testthat/test-features.R | 79 ++++++++++++++++++++++++++++ tests/testthat/test-overlap.R | 36 ++++++++++++ tests/testthat/test-robustness.R | 12 ++-- vignettes/MergeKmeans.Rmd | 37 +++++++++++++ 20 files changed, 692 insertions(+), 235 deletions(-)
Title: Machine Learning Models and Tools
Description: Meta-package for statistical and machine learning with a unified
interface for model fitting, prediction, performance assessment, and
presentation of results. Approaches for model fitting and prediction of
numerical, categorical, or censored time-to-event outcomes include
traditional regression models, regularization methods, tree-based methods,
support vector machines, neural networks, ensembles, data preprocessing,
filtering, and model tuning and selection. Performance metrics are provided
for model assessment and can be estimated with independent test sets, split
sampling, cross-validation, or bootstrap resampling. Resample estimation
can be executed in parallel for faster processing and nested in cases of
model tuning and selection. Modeling results can be summarized with
descriptive statistics; calibration curves; variable importance; partial
dependence plots; confusion matrices; and ROC, lift, and other performance
curves.
Author: Brian J Smith [aut, cre]
Maintainer: Brian J Smith <brian-j-smith@uiowa.edu>
Diff between MachineShop versions 3.9.3 dated 2026-06-26 and 3.9.4 dated 2026-09-04
DESCRIPTION | 8 +++--- MD5 | 10 ++++---- NEWS.md | 4 +++ R/ML_GAMBoostModel.R | 4 --- build/vignette.rds |binary inst/doc/UserGuide.html | 56 ++++++++++++++++++++++++------------------------ 6 files changed, 42 insertions(+), 40 deletions(-)
Title: Data Mining and R Programming for Beginners
Description: Contains functions to simplify the use of data mining methods (classification, regression, clustering, etc.), for students and beginners in R programming. Various R packages are used and wrappers are built around the main functions, to standardize the use of data mining methods (input/output): it brings a certain loss of flexibility, but also a gain of simplicity. The package name came from the French "Fouille de Données en Master 2 Informatique Décisionnelle".
Author: Alexandre Blansche [aut, cre]
Maintainer: Alexandre Blansche <alexandre.blansche@univ-lorraine.fr>
Diff between fdm2id versions 1.0.0 dated 2026-08-28 and 1.0.1 dated 2026-09-04
fdm2id-1.0.0/fdm2id/inst/doc/v01-pca-breast-tumours.R |only fdm2id-1.0.0/fdm2id/inst/doc/v02-discriminant-analysis-spine.R |only fdm2id-1.0.0/fdm2id/inst/doc/v03-linear-regression-hill-races.R |only fdm2id-1.0.0/fdm2id/inst/doc/v04-clustering-wheat-varieties.R |only fdm2id-1.0.0/fdm2id/inst/doc/v05-visualisation-cars.R |only fdm2id-1.0.0/fdm2id/inst/doc/v06-ensemble-methods-ionosphere.R |only fdm2id-1.0.0/fdm2id/inst/doc/v07-clustering-earthquakes.R |only fdm2id-1.0.0/fdm2id/inst/doc/v08-feature-selection-crabs.R |only fdm2id-1.0.1/fdm2id/DESCRIPTION | 6 fdm2id-1.0.1/fdm2id/MD5 | 62 +-- fdm2id-1.0.1/fdm2id/NEWS.md | 8 fdm2id-1.0.1/fdm2id/build/vignette.rds |binary fdm2id-1.0.1/fdm2id/inst/doc/v01-pca-breast-tumours.Rmd | 106 +++++- fdm2id-1.0.1/fdm2id/inst/doc/v01-pca-breast-tumours.html | 34 +- fdm2id-1.0.1/fdm2id/inst/doc/v02-discriminant-analysis-spine.Rmd | 127 ++++++-- fdm2id-1.0.1/fdm2id/inst/doc/v02-discriminant-analysis-spine.html | 46 +- fdm2id-1.0.1/fdm2id/inst/doc/v03-linear-regression-hill-races.Rmd | 105 +++++- fdm2id-1.0.1/fdm2id/inst/doc/v03-linear-regression-hill-races.html | 41 ++ fdm2id-1.0.1/fdm2id/inst/doc/v04-clustering-wheat-varieties.Rmd | 126 ++++++-- fdm2id-1.0.1/fdm2id/inst/doc/v04-clustering-wheat-varieties.html | 38 +- fdm2id-1.0.1/fdm2id/inst/doc/v05-visualisation-cars.Rmd | 112 +++++-- fdm2id-1.0.1/fdm2id/inst/doc/v05-visualisation-cars.html | 62 +++ fdm2id-1.0.1/fdm2id/inst/doc/v06-ensemble-methods-ionosphere.Rmd | 89 ++++- fdm2id-1.0.1/fdm2id/inst/doc/v06-ensemble-methods-ionosphere.html | 37 +- fdm2id-1.0.1/fdm2id/inst/doc/v07-clustering-earthquakes.Rmd | 156 ++++++++-- fdm2id-1.0.1/fdm2id/inst/doc/v07-clustering-earthquakes.html | 93 ++++- fdm2id-1.0.1/fdm2id/inst/doc/v08-feature-selection-crabs.Rmd | 134 ++++++-- fdm2id-1.0.1/fdm2id/inst/doc/v08-feature-selection-crabs.html | 22 - fdm2id-1.0.1/fdm2id/vignettes/v01-pca-breast-tumours.Rmd | 106 +++++- fdm2id-1.0.1/fdm2id/vignettes/v02-discriminant-analysis-spine.Rmd | 127 ++++++-- fdm2id-1.0.1/fdm2id/vignettes/v03-linear-regression-hill-races.Rmd | 105 +++++- fdm2id-1.0.1/fdm2id/vignettes/v04-clustering-wheat-varieties.Rmd | 126 ++++++-- fdm2id-1.0.1/fdm2id/vignettes/v05-visualisation-cars.Rmd | 112 +++++-- fdm2id-1.0.1/fdm2id/vignettes/v06-ensemble-methods-ionosphere.Rmd | 89 ++++- fdm2id-1.0.1/fdm2id/vignettes/v07-clustering-earthquakes.Rmd | 156 ++++++++-- fdm2id-1.0.1/fdm2id/vignettes/v08-feature-selection-crabs.Rmd | 134 ++++++-- 36 files changed, 1816 insertions(+), 543 deletions(-)
Title: An Interface to Google's 'BigQuery Storage' API
Description: Easily talk to Google's 'BigQuery Storage' API from R
(<https://docs.cloud.google.com/bigquery/docs/reference/storage/rpc>).
Author: Bruno Tremblay [aut, cre],
Google LLC [cph, fnd]
Maintainer: Bruno Tremblay <openr@neoxone.com>
Diff between bigrquerystorage versions 1.2.2 dated 2025-01-07 and 1.2.3 dated 2026-09-04
DESCRIPTION | 10 MD5 | 47 ++ NEWS.md | 12 R/RcppExports.R | 46 +- R/bqs_download.R | 695 +++++++++++++++++++------------------- README.md | 6 man/bigrquerystorage-package.Rd | 7 man/bqs_table_download.Rd | 6 src/RProgress.h | 3 src/google |only tests/testthat/test-bigint.R |only tests/testthat/test-integration.R | 473 +++++++++++++------------ 12 files changed, 698 insertions(+), 607 deletions(-)
More information about bigrquerystorage at CRAN
Permanent link
Title: Optimal Distribution Preserving Down-Sampling of Bio-Medical
Data
Description: An optimized method for distribution-preserving class-proportional down-sampling of bio-medical data <doi:10.1371/journal.pone.0255838>.
Author: Jorn Lotsch [aut, cre] ,
Sebastian Malkusch [aut] ,
Alfred Ultsch [aut]
Maintainer: Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>
Diff between opdisDownsampling versions 1.6 dated 2026-06-25 and 1.7 dated 2026-09-04
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/chunk_processing.R | 10 +++++++--- R/data_sample_analyze.R | 7 +++++-- R/make_and_analyse_subsample.R | 17 +++++++++++++---- R/opdisDownsampling.R | 23 ++++++++++++++++++----- R/select_best_sample.R | 19 +++++++++++++++++++ README.md | 1 + build/partial.rdb |binary man/opdisDownsampling.Rd | 6 +++++- 10 files changed, 80 insertions(+), 27 deletions(-)
More information about opdisDownsampling at CRAN
Permanent link
Title: Plotting Functions for Climate Science and Services
Description: A plotting package for climate science and services. Provides a set
of functions for visualizing climate data, including maps, time series,
scorecards and other diagnostics. Some functions are adapted and extended
from the 's2dv' and 'CSTools' packages (Manubens et al. (2018)
<doi:10.1016/j.envsoft.2018.01.018>; Pérez-Zanón et al. (2022)
<doi:10.5194/gmd-15-6115-2022>), with more consistent and integrated
functionalities.
Author: BSC-CNS [aut, cph],
An-Chi Ho [aut],
Eva Rifa [ctb],
Victoria Agudetse [ctb],
Ariadna Batalla [ctb, cre],
Nuria Perez-Zanon [ctb],
Nadia Milders [ctb],
Veronica Torralba [ctb],
Raul Capellan [ctb],
Anindita Patra [ctb]
Maintainer: Ariadna Batalla <ariadna.batalla@bsc.es>
Diff between esviz versions 0.0.3 dated 2026-05-28 and 0.0.4 dated 2026-09-04
DESCRIPTION | 8 +- MD5 | 20 ++--- NEWS.md | 11 +++ R/BarPlotCat.R | 173 ++++++++++++++++++++++++++++++++++++--------------- R/ColorBarDiscrete.R | 8 +- R/VizCombinedMap.R | 112 +-------------------------------- R/VizEquiMap.R | 18 +++-- R/VizRobinson.R | 13 ++- man/BarPlotCat.Rd | 65 ++++++++++++++++--- man/VizEquiMap.Rd | 5 + man/VizRobinson.Rd | 10 +- 11 files changed, 244 insertions(+), 199 deletions(-)
Title: Changepoints for a Range of Penalties (CROPS)
Description: Implements the Changepoints for a Range of Penalties (CROPS) algorithm of Haynes et al. (2017) <doi:10.1080/10618600.2015.1116445> for finding all of the optimal segmentations for multiple penalty values over a continuous range.
Author: Daniel Grose [aut, cre],
Paul Fearnhead [aut],
Idris Eckley [ctb]
Maintainer: Daniel Grose <dan.grose@lancaster.ac.uk>
Diff between crops versions 1.0.3 dated 2022-08-05 and 1.0.4 dated 2026-09-04
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/crops.R | 21 ++++++++++----------- build/partial.rdb |binary man/crops.Rd | 4 ++-- 5 files changed, 21 insertions(+), 22 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes ADAM (Svetunkov, 2023, <https://openforecast.org/adam/>),
Exponential Smoothing (Hyndman et al., 2008, <doi:10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi:10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi:10.1080/00207543.2017.1380326>)
and several simulation functions. It also allows dealing with intermittent demand based on the
iETS framework (Svetunkov & Boylan, 2019, <doi:10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre]
Maintainer: Ivan Svetunkov <ivan@svetunkov.com>
Diff between smooth versions 4.5.1 dated 2026-09-03 and 4.5.2 dated 2026-09-04
DESCRIPTION | 8 ++-- MD5 | 30 ++++++++-------- NEWS | 14 +++++++ R/adam-gum.R | 75 +++++++++++++++++++++++++++++------------ R/sparma.R | 14 +++++-- inst/doc/adam.html | 40 ++++++++++----------- inst/doc/ces.html | 8 ++-- inst/doc/es.html | 14 +++---- inst/doc/gum.html | 8 ++-- inst/doc/oes.html | 20 +++++----- inst/doc/om.html | 14 +++---- inst/doc/simulate.html | 4 +- inst/doc/sma.html | 4 +- inst/doc/smooth.html | 4 +- inst/doc/ssarima.html | 12 +++--- tests/testthat/test_gradient.R | 10 ++++- 16 files changed, 169 insertions(+), 110 deletions(-)
Title: Some Utilities for Developing Data Science Software
Description: A collection of general-purpose helper functions that I (and maybe
others) find useful when developing data science software. Includes tools
for simulation, data transformation, input validation, and more.
Author: Lennart Oelschlaeger [aut, cre]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between oeli versions 0.7.6 dated 2026-04-23 and 0.7.7 dated 2026-09-04
DESCRIPTION | 8 MD5 | 185 ++++++------ NAMESPACE | 1 NEWS.md | 10 R/RcppExports.R | 4 R/correlated_regressors.R | 55 ++- R/dictionary.R | 6 R/dirichlet.R | 4 R/find_namespace_calls.R | 34 +- R/find_pkg_functions.R |only R/hermannslauf.R | 16 - R/insert_matrix_column.R | 5 R/insert_vector_entry.R | 2 R/map_indices.R | 4 R/merge_lists.R | 5 R/mixnorm.R | 7 R/mvnorm.R | 66 +++- R/oeli-package.R | 1 R/print_matrix.R | 5 R/simulator.R | 7 R/storage.R | 29 + R/timed.R | 4 R/unexpected_error.R | 2 inst/include/mvnorm.h | 4 inst/include/oeli_RcppExports.h | 8 man/Dictionary.Rd | 211 +++++++------- man/Simulator.Rd | 165 +++++------ man/Storage.Rd | 305 ++++++++++---------- man/check_correlation_matrix.Rd | 26 - man/check_covariance_matrix.Rd | 26 - man/check_list_of_lists.Rd | 4 man/check_missing.Rd | 23 - man/check_numeric_vector.Rd | 22 - man/check_one_hot_matrix.Rd | 26 - man/check_probability_vector.Rd | 22 - man/check_transition_probability_matrix.Rd | 26 - man/chunk_vector.Rd | 22 - man/correlated_regressors.Rd | 16 - man/cov_to_chol.Rd | 26 - man/ddirichlet.Rd | 16 - man/delete_columns_data.frame.Rd | 8 man/diff_cov.Rd | 26 - man/dmixnorm.Rd | 23 - man/dmvnorm.Rd | 79 ++++- man/do.call_timed.Rd | 16 - man/dtnorm.Rd | 16 - man/dwishart.Rd | 16 - man/equidistant_vectors.Rd | 22 - man/find_namespace_calls.Rd | 27 - man/find_pkg_functions.Rd |only man/function_arguments.Rd | 16 - man/function_body.Rd | 16 - man/function_defaults.Rd | 16 - man/gaussian_tv.Rd | 16 - man/group_data.frame.Rd | 8 man/hermann.Rd | 1 man/identical_structure.Rd | 23 - man/input_check_response.Rd | 23 - man/insert_matrix_column.Rd | 28 - man/insert_vector_entry.Rd | 24 - man/map_indices.Rd | 22 - man/match_arg.Rd | 23 - man/match_numerics.Rd | 22 - man/matrix_diagonal_indices.Rd | 26 - man/matrix_indices.Rd | 26 - man/merge_lists.Rd | 4 man/occurrence_info.Rd | 8 man/oeli-package.Rd | 6 man/package_logo.Rd | 23 - man/permutations.Rd | 22 - man/print_data.frame.Rd | 23 - man/print_matrix.Rd | 23 - man/quiet.Rd | 16 - man/round_data.frame.Rd | 8 man/sample_correlation_matrix.Rd | 26 - man/sample_covariance_matrix.Rd | 26 - man/sample_transition_probability_matrix.Rd | 26 - man/simulate_markov_chain.Rd | 16 - man/split_vector_at.Rd | 22 - man/stationary_distribution.Rd | 26 - man/subsets.Rd | 22 - man/system_information.Rd | 23 - man/timed.Rd | 16 - man/try_silent.Rd | 16 - man/unexpected_error.Rd | 25 - man/user_confirm.Rd | 23 - man/variable_name.Rd | 16 - man/vector_occurrence.Rd | 22 - src/RcppExports.cpp | 28 + src/internal.cpp | 8 src/internal.h | 4 src/mvnorm.cpp | 418 ++++++++++++++++++++++++++-- src/test-mvnorm.cpp | 19 + tests/testthat/test-find_pkg_functions.R |only tests/testthat/test-mvnorm.R | 33 ++ 95 files changed, 1772 insertions(+), 1107 deletions(-)
Title: Analysis of Interval DAta
Description: Tools for the analysis of interval-valued data, including construction,
visualization, and statistical modeling. The package provides the 'intData' class for
representing interval-valued data, along with functions to aggregate microdata and
to estimate parameters of latent distributions.
Barycenter and covariance matrix estimation is implemented based on the Mallows
distance (Oliveira et al. (2025) <doi:10.48550/arXiv.2407.05105>).
Robust estimation of the symbolic covariance matrix is implemented via the Interval
Minimum Covariance Determinant (IMCD) estimator, enabling outlier detection
based on the robust squared Interval-Mahalanobis distance, as proposed by
Loureiro et al. (2026b) <doi:10.48550/arXiv.2604.26769>.
Explainable outlier detection is supported through Shapley value based decomposition
of the squared robust Interval-Mahalanobis distance, allowing assessment of variable
contributions to outlyingness (Loureiro et al. (2026a) <doi:10.48550/arXiv.2606.26307> [...truncated...]
Author: Catarina P. Loureiro [aut, cre]
Maintainer: Catarina P. Loureiro <catarinapadrela@tecnico.ulisboa.pt>
Diff between AIDA versions 0.2.0 dated 2026-06-30 and 0.2.1 dated 2026-09-04
DESCRIPTION | 8 +- MD5 | 94 +++++++++++++-------------- NAMESPACE | 125 +++++++++++++++++++----------------- NEWS.md | 11 ++- R/IMCD.r | 23 +++--- R/data.r | 4 - R/farness.r | 4 - R/intData_class.r | 2 R/intData_utils.r | 26 ++++++- R/int_distances.r | 2 R/micro2intData.r | 69 ++++++++++--------- R/plots.r | 2 R/plots_Shapley.r | 12 +++ README.md | 2 data/entrecampos_air_quality.rda |binary inst/CITATION | 4 - inst/WORDLIST | 11 ++- inst/doc/IMCD_examples.Rmd | 6 - inst/doc/IMCD_examples.html | 47 ++++++------- inst/doc/Shapley_examples.Rmd | 10 +- inst/doc/Shapley_examples.html | 55 +++++++-------- inst/doc/intData_examples.R | 2 inst/doc/intData_examples.Rmd | 20 ++--- inst/doc/intData_examples.html | 50 +++++++------- man/IMCD.Rd | 2 man/bigIMCD.Rd | 2 man/c_step.Rd | 2 man/entrecampos_air_quality.Rd | 4 - man/farness.Rd | 4 - man/get_latent_param.Rd | 10 ++ man/get_latent_var.Rd | 2 man/micro2intData.Rd | 9 +- man/pick10.Rd | 2 man/plot_beeswarm_int_Shapley.Rd | 5 + man/smallIMCD.Rd | 2 man/spotify_tracks.Rd | 1 man/step_it.Rd | 2 tests/testthat/test-IMCD.R | 39 ++++++++++- tests/testthat/test-intData_class.R | 11 +++ tests/testthat/test-intData_utils.R | 12 +++ tests/testthat/test-int_cov.R | 4 + tests/testthat/test-int_distances.R | 49 ++++++++++++++ tests/testthat/test-int_outliers.R | 5 + tests/testthat/test-micro2intData.R | 34 ++++++--- tests/testthat/test-plots_Shapley.R | 10 ++ vignettes/IMCD_examples.Rmd | 6 - vignettes/Shapley_examples.Rmd | 10 +- vignettes/intData_examples.Rmd | 20 ++--- 48 files changed, 527 insertions(+), 309 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-05-16 0.1.0
Title: Specific Correspondence Analysis for the Social Sciences
Description: Specific and class specific multiple correspondence analysis on
survey-like data. Soc.ca is optimized to the needs of the social scientist and
presents easily interpretable results in near publication ready quality.
Author: Anton Grau Larsen [aut, cre],
Jacob Lunding [aut],
Stefan Andrade [aut]
Maintainer: Anton Grau Larsen <agraul@ruc.dk>
This is a re-admission after prior archival of version 0.8.1 dated 2025-08-25
Diff between soc.ca versions 0.8.1 dated 2025-08-25 and 0.8.2 dated 2026-09-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/functions_triads.r | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Residual Prediction Tests for Well-Specification of Instrumental
Variable Models
Description: Two tests for the well-specification of the linear instrumental
variable model. The first test is based on trying to predict the residuals of a
two-stage least-squares regression using a random forest. The second test is robust
to weak-identification and based on trying to predict the residuals for a particular
candidate parameter and can also be used to construct confidence sets with an
Anderson-Rubin-type inversion. Details can be found in Scheidegger, Londschien
and Bühlmann (2025) "Machine-learning-powered specification testing in linear
instrumental variable models" <doi:10.48550/arXiv.2506.12771>.
Author: Cyrill Scheidegger [aut, cre, cph]
Maintainer: Cyrill Scheidegger <cyscheidegger@gmail.com>
Diff between RPIV versions 1.1.0 dated 2026-03-24 and 1.1.1 dated 2026-09-04
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 12 +++++++----- NEWS.md | 5 +++++ 4 files changed, 21 insertions(+), 14 deletions(-)
Title: Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Description: Read and write 'las' and 'laz' binary file formats. The LAS file format is a public file format for the interchange of 3-dimensional point cloud data between data users. The LAS specifications are approved by the American Society for Photogrammetry and Remote Sensing <https://community.asprs.org/leadership-restricted/leadership-content/public-documents/standards>. The LAZ file format is an open and lossless compression scheme for binary LAS format versions 1.0 to 1.4 <https://laszip.org/>.
Author: Jean-Romain Roussel [aut, cre, cph],
Florian De Boissieu [ctb] ,
Martin Isenburg [cph] ,
rapidlasso GmbH [cph] ,
Alexey Grigoryev [ctb, cph] ,
David Auty [ctb] ,
Pierrick Marie [ctb] ,
Tiago de Conto [ctb]
Maintainer: Jean-Romain Roussel <info@r-lidar.com>
This is a re-admission after prior archival of version 1.9.3 dated 2026-06-02
Diff between rlas versions 1.9.3 dated 2026-06-02 and 1.9.5 dated 2026-09-04
DESCRIPTION | 20 +++++++++++------ MD5 | 43 ++++++++++++++++++------------------- NEWS.md | 8 ++++++ R/altrep.R | 3 +- R/check_content.r | 2 - R/header_tools.r | 5 ++++ R/help.R | 1 R/las_specifications.r | 2 + R/writeLAX.r | 2 - inst/COPYRIGHTS |only man/LASlibdoc.Rd | 3 ++ man/check.Rd | 3 ++ man/compression.Rd | 4 ++- man/crs_tools.Rd | 9 ++++++- man/extra_bytes_attribute_tools.Rd | 7 ++++-- man/fwf_interpreter.Rd | 2 - man/las_specification_tools.Rd | 3 ++ man/public_header_block_tools.Rd | 4 +-- man/read.lasheader.Rd | 4 +-- man/write.las.Rd | 4 +-- man/writelax.Rd | 3 ++ src/Makevars.in | 1 src/rlasstreamer.cpp | 6 +++-- 23 files changed, 94 insertions(+), 45 deletions(-)
Title: Spectral Preprocessing and Chemometric Calibration of NIR
Sensors
Description: Provides tools to build quantitative chemometric models and
applications for near-infrared (NIR) sensors. Chemometric regression
models are based on partial least squares regression as described by
Wold (1975) <doi:10.1016/B978-0-12-103950-9.50017-4> and modified
partial least squares regression as described by Shenk and Westerhaus
(1991) <doi:10.2135/cropsci1991.0011183X003100020049x>, with further
discussion by Westerhaus (2014) <doi:10.1255/nirn.1492>.
Author: Leonardo Ramirez-Lopez [aut, cre] ,
Claudio Orellano [aut] ,
Nicolae Cudlenco [aut] ,
Mai Said [aut] ,
Mohamed Abushosha [aut],
Marcal Plans [aut]
Maintainer: Leonardo Ramirez-Lopez <ramirez-lopez.l@buchi.com>
Diff between proximetricsR versions 0.7.0 dated 2026-08-04 and 0.7.1 dated 2026-09-04
DESCRIPTION | 12 MD5 | 217 +++--- NEWS | 22 R/NIRcannabis.R | 55 - R/add_metadata.R | 8 R/cal_helpers.R | 79 +- R/calibrate.R | 99 ++- R/calibrate_cv.R | 6 R/calibrate_models.R | 4 R/extract_property_names.R | 5 R/plot.spectral_model.R | 107 ++- R/prep_derivative.R | 4 R/prep_detrend.R | 4 R/prep_resample.R | 4 R/prep_smooth.R | 4 R/prep_snv.R | 4 R/prep_transform.R | 4 R/prep_wav_trim.R | 63 + R/preprocess_recipe.R | 4 R/proximateCannabis.R |only R/proximate_data.R | 8 R/proximate_read_data.R | 8 R/proximate_write_data.R | 18 R/proximate_write_model.R | 4 R/proximate_write_nax.R | 6 R/proximetricsR.R | 9 R/proxiscoutCannabis.R |only R/proxiscout_read_data.R | 14 R/proxiscout_write_data.R | 69 +- R/proxiscout_write_model.R | 4 R/sample_stratified.R | 2 R/validate_prediction.R | 32 - R/write_cal.R | 4 R/write_prj.R | 4 R/write_rtf.R | 4 README.md | 10 build/stage23.rdb |binary data/proximateCannabis.rda |only data/proxiscoutCannabis.rda |only inst/CITATION | 2 inst/doc/aa-intro.html | 4 inst/doc/ab-pre-processing-recipes.R | 4 inst/doc/ab-pre-processing-recipes.html | 8 inst/doc/ab-pre-processing-recipes.qmd | 4 inst/doc/ac-mathematical-overview-of-regression-algorithms.html | 4 inst/doc/ad-proximate-building-applications.html | 4 inst/doc/ae-proxiscout-building-applications.html | 4 inst/doc/af-proximate-structure-of-the-applications.html | 6 inst/doc/ag-proxiscout-structure-of-the-applications.html | 4 inst/doc/ah-read-and-recalibrate-applications.html | 4 inst/model_plot_template.qmd | 298 ++++++++- man/NIRcannabis.Rd | 52 - man/add_application_metadata.Rd | 4 man/add_model_metadata.Rd | 4 man/calibrate.Rd | 32 - man/calibrate_models.Rd | 4 man/dot-freeze_trim_steps.Rd |only man/dot-gh_distance.Rd |only man/dot-leverage_limit.Rd |only man/extract_property_names.Rd | 2 man/plot.spectral_model.Rd | 45 + man/prep_derivative.Rd | 4 man/prep_detrend.Rd | 4 man/prep_resample.Rd | 4 man/prep_smooth.Rd | 4 man/prep_snv.Rd | 4 man/prep_transform.Rd | 4 man/prep_wav_trim.Rd | 13 man/preprocess_recipe.Rd | 4 man/proximateCannabis.Rd |only man/proximate_data.Rd | 8 man/proximate_read_data.Rd | 8 man/proximate_write_data.Rd | 18 man/proximate_write_model.Rd | 4 man/proximate_write_nax.Rd | 6 man/proximetricsR-package.Rd | 9 man/proxiscoutCannabis.Rd |only man/proxiscout_read_data.Rd | 4 man/proxiscout_write_data.Rd | 26 man/proxiscout_write_model.Rd | 4 man/sample_stratified.Rd | 2 man/validate_prediction.Rd | 12 src/processing_helpers.cpp | 1 tests/testthat/_snaps/estimate_model.md | 64 +- tests/testthat/_snaps/validate_prediction.md | 316 +++++----- tests/testthat/test-cal_helpers.R |only tests/testthat/test-calibrate.R | 8 tests/testthat/test-calibrate_cv.R | 6 tests/testthat/test-calibrate_models.R | 20 tests/testthat/test-calibration_statistics.R | 8 tests/testthat/test-estimate_model.R | 36 - tests/testthat/test-extract_property_names.R |only tests/testthat/test-plot.spectral_model.R | 56 + tests/testthat/test-predict.spectral_model.R | 225 ++++++- tests/testthat/test-prep_derivatives.R | 4 tests/testthat/test-prep_detrend.R | 4 tests/testthat/test-prep_resample.R | 4 tests/testthat/test-prep_smooth.R | 4 tests/testthat/test-prep_snv.R | 4 tests/testthat/test-prep_wav_trim.R | 136 +++- tests/testthat/test-proximate_add2nax.R | 20 tests/testthat/test-proximate_data.R | 64 +- tests/testthat/test-proximate_recalibrate_nax.R | 2 tests/testthat/test-proximate_write_data.R | 24 tests/testthat/test-proxiscout_read_data.R | 75 ++ tests/testthat/test-proxiscout_write_data.R |only tests/testthat/test-proxiscout_write_model.R | 14 tests/testthat/test-proxiscout_write_model_info.R | 4 tests/testthat/test-read_spc.R | 18 tests/testthat/test-validate_prediction.R | 63 + tests/testthat/test-write_cal.R | 10 tests/testthat/test-write_nax.R | 14 tests/testthat/test-write_prj.R | 10 tests/testthat/test-write_rtf.R | 10 tests/testthat/testdata/proxiscout-na-markers.xlsx |only vignettes/ab-pre-processing-recipes.qmd | 4 116 files changed, 1927 insertions(+), 833 deletions(-)
Title: Double Machine Learning with Instrumental Variables and
Heterogeneity
Description: Instrumental variable (IV) estimators for homogeneous and
heterogeneous treatment effects with efficient machine learning instruments.
The estimators are based on double/debiased machine learning allowing for
nonlinear and potentially high-dimensional control variables. Details can
be found in Scheidegger, Guo and Bühlmann (2025) "Inference for
heterogeneous treatment effects with efficient instruments and machine
learning" <doi:10.48550/arXiv.2503.03530>.
Author: Cyrill Scheidegger [aut, cre, cph]
Maintainer: Cyrill Scheidegger <cyscheidegger@gmail.com>
Diff between IVDML versions 1.0.1 dated 2025-12-12 and 1.0.2 dated 2026-09-04
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 24 +++++++++++++----------- NEWS.md | 5 +++++ build/partial.rdb |binary man/IVDML-package.Rd | 7 ++++++- 6 files changed, 35 insertions(+), 23 deletions(-)
Title: Expected Value of Information Based Sample Size Calculation
Description: Computes sample sizes for trial-based cost-effectiveness analyses using the expected value of information. The implementation follows the method described by Bader et al. (2018) <doi:10.1186/s12874-018-0571-1>.
Author: Audrey Cordon [aut, cre],
Clement Bader [ctb],
Morgane Donadel [ctb],
Aline Maillard [ctb],
Sebastien Cossin [ctb],
Mohamedou Sow [ctb],
Antoine Benard [ctb]
Maintainer: Audrey Cordon <astreinte.usmr@chu-bordeaux.fr>
Diff between EBASS versions 0.1.1 dated 2026-08-04 and 0.1.2 dated 2026-09-04
DESCRIPTION | 32 +++++++++++++++++++------------- MD5 | 8 ++++---- NEWS.md | 5 +++++ build/vignette.rds |binary inst/doc/my-vignette.html | 4 ++-- 5 files changed, 30 insertions(+), 19 deletions(-)
Title: Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
Description: We implemented a Bayesian-statistics approach for
subtraction of incoherent scattering from neutron total-scattering data.
In this approach, the estimated background signal associated with
incoherent scattering maximizes the posterior probability, which combines
the likelihood of this signal in reciprocal and real spaces with the prior
that favors smooth lines. The description of the corresponding approach
could be found at Gagin and Levin (2014) <DOI:10.1107/S1600576714023796>.
Author: Anton Gagin [aut, cre],
Igor Levin [aut],
Charles R. Hogg III [ctb]
Maintainer: Anton Gagin <av.gagin@gmail.com>
Diff between BBEST versions 0.1-8 dated 2020-11-19 and 0.1-9 dated 2026-09-04
ChangeLog | 8 ++++++++ DESCRIPTION | 37 ++++++++++++++++++++++--------------- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ R/progress.R | 4 ++++ README.md | 6 +++--- inst/gui/help/help.html | 2 +- man/Progress.Rd | 5 +++++ man/read.sqa.Rd | 2 +- man/read.sqb.Rd | 2 +- man/runUI.Rd | 2 +- 11 files changed, 61 insertions(+), 32 deletions(-)
Title: Analysis Blinding Tools
Description: Provides tools for analysis blinding in confirmatory research contexts
by masking and scrambling test-relevant aspects of data. Vector-, data frame-, and
row-wise operations support blinding for hierarchical and repeated-measures designs.
For more details see MacCoun and Perlmutter (2015) <doi:10.1038/526187a> and
Dutilh, Sarafoglou, and Wagenmakers (2019) <doi:10.1007/s11229-019-02456-7>.
Author: Tamas Nagy [aut, cre] ,
Alexandra Sarafoglou [aut, dtc] ,
Marton Kovacs [aut]
Maintainer: Tamas Nagy <nagytamas.hungary@gmail.com>
Diff between vazul versions 1.1.0 dated 2026-02-07 and 1.2.0 dated 2026-09-04
DESCRIPTION | 10 MD5 | 52 - NAMESPACE | 16 NEWS.md | 126 +- R/marp.R | 6 R/mask_labels.R | 122 +- R/mask_names.R | 290 +++--- R/mask_variables.R | 269 ++--- R/scramble_variables.R | 8 R/utils-validation.R | 53 + R/williams.R | 19 README.md | 14 inst/doc/data_blinding_functions.html | 3 inst/doc/data_blinding_functions.qmd | 990 ++++++++++----------- inst/doc/using_mask_names.R | 56 + inst/doc/using_mask_names.html | 200 +++- inst/doc/using_mask_names.qmd | 294 ++++-- man/marp.Rd | 184 +-- man/mask_names.Rd | 26 man/vazul-package.Rd | 1 man/williams.Rd | 179 +-- tests/testthat/test-mask_names.R | 172 +++ tests/testthat/test-mask_variables.R | 1048 +++++++++++----------- tests/testthat/test-scramble_values.R | 272 ++--- tests/testthat/test-scramble_variables.R | 1435 ++++++++++++++++--------------- vignettes/data_blinding_functions.qmd | 990 ++++++++++----------- vignettes/using_mask_names.qmd | 294 ++++-- 27 files changed, 3952 insertions(+), 3177 deletions(-)
Title: R Interface to Get French Heritage Data
Description: Get spatial vector data from the Atlas du Patrimoine
(<http://atlas.patrimoines.culture.fr/atlas/trunk/>),
the official national platform of the French Ministry of Culture,
and facilitate its use within R geospatial workflows.
The package provides functions to list available heritage datasets,
query and retrieve heritage data using spatial queries based
on user-provided sf objects, perform spatial filtering operations,
and return results as sf objects suitable for spatial analysis, mapping,
and integration into heritage management and landscape studies.
Author: Matthieu Chevereau [aut, cre]
Maintainer: Matthieu Chevereau <matthieu.chevereau@hotmail.fr>
Diff between frheritage versions 0.1.1 dated 2026-04-17 and 0.1.2 dated 2026-09-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 17 +++++------------ R/get_heritage.R | 45 +++++++++++++++++++++++++++++++++++++++------ 4 files changed, 50 insertions(+), 24 deletions(-)
Title: 'Express.js' Like Routing for R Web Frameworks
Description: It aims to provide R web frameworks a routing mechanism of HTTP
requests inspired by the battle tested 'Express.js' web framework.
Author: Julio Collazos [aut, cre] ,
router contributors [ctb, cph]
Maintainer: Julio Collazos <amarullazo626@gmail.com>
Diff between routing versions 1.1.0 dated 2026-05-12 and 1.1.1 dated 2026-09-04
DESCRIPTION | 10 MD5 | 22 - NEWS.md | 8 R/layer.R | 2 R/route.R | 14 R/utils.R | 4 man/Router.Rd | 301 ++++++++------- tests/testthat/helper-server.R | 135 +++---- tests/testthat/test-handle.R | 578 +++++++++--------------------- tests/testthat/test-param.R | 129 +++--- tests/testthat/test-req.params.R | 105 ++--- tests/testthat/test-route.R | 748 ++++++++++++++------------------------- 12 files changed, 811 insertions(+), 1245 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-03 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-28 2.4.1
2022-05-18 2.3.3
2022-05-09 2.3.2
2022-02-13 2.2.3
2022-01-26 2.2.1
2022-01-18 2.1.1
Title: Weighted Generalised Covariance Measure Conditional Independence
Test
Description: A conditional independence test that can be applied both to
univariate and multivariate random variables. The test is based on a
weighted form of the sample covariance of the residuals after a
nonlinear regression on the conditioning variables. Details are
described in Scheidegger, Hoerrmann and Buehlmann (2022) "The Weighted
Generalised Covariance Measure" <http://jmlr.org/papers/v23/21-1328.html>.
The test is a generalisation of the Generalised Covariance Measure (GCM)
implemented in the R package 'GeneralisedCovarianceMeasure' by Jonas Peters and
Rajen D. Shah based on Shah and Peters (2020) "The Hardness of
Conditional Independence Testing and the Generalised Covariance
Measure" <doi:10.1214/19-AOS1857>.
Author: Cyrill Scheidegger [aut, cre, cph],
Julia Hoerrmann [ths],
Peter Buehlmann [ths],
Jonas Peters [ctb, cph] ,
Rajen D. Shah [ctb, cph]
Maintainer: Cyrill Scheidegger <cyscheidegger@gmail.com>
Diff between weightedGCM versions 0.1.1 dated 2025-12-12 and 0.1.2 dated 2026-09-04
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 12 +++++++----- NEWS.md | 4 ++++ 4 files changed, 20 insertions(+), 14 deletions(-)
Title: Multi-Stock Assessment
Description: Implementation of a next-generation, multi-stock age-structured fisheries assessment model.
'multiSA' is intended for use in mixed fisheries where stock composition can not be readily identified in
fishery data alone, e.g., from catch and age/length composition. Models can be fitted to genetic data,
e.g., stock composition of catches and close-kin pairs, with seasonal stock availability and movement.
Author: Quang Huynh [aut, cre]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between multiSA versions 0.4.0 dated 2026-06-27 and 0.5.0 dated 2026-09-04
DESCRIPTION | 8 MD5 | 40 NAMESPACE | 2 NEWS.md | 91 + R/check-data.R | 18 R/define-s4-class.R | 8 R/jitter.R | 158 +-- R/make-parameters.R | 207 +++- R/misc.R | 865 +++++++++--------- R/model.R | 2372 +++++++++++++++++++++++++------------------------- R/model_int.R | 1394 ++++++++++++++--------------- R/profile.R | 606 ++++++------ R/report-int-data.R | 264 ++++- R/report-int-state.R | 12 R/selectivity.R | 8 build/partial.rdb |binary man/Dfishery-class.Rd | 2 man/Dsurvey-class.Rd | 3 man/MSAdata-class.Rd | 5 man/conv_selpar.Rd | 4 man/plot-MSA-data.Rd | 4 21 files changed, 3176 insertions(+), 2895 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-08-25 1.3.6
2024-12-22 1.3.3
2024-07-05 1.3.2
2024-01-10 1.2.0
2023-03-03 1.0.2
Title: Interface to the IUCN Red List Data with Risk Metrics
Description: Access species conservation data from the International Union for
Conservation of Nature (IUCN) Red List API
<https://api.iucnredlist.org/api-docs/index.html>, including assessments,
taxonomy, threats, habitats and historical status. The package also
reconciles taxonomic names between the IUCN Red List and the Global
Biodiversity Information Facility (GBIF), retrieves and checks GBIF occurrence
records, and computes the range and population metrics of the IUCN Red List
Categories and Criteria (IUCN Standards and Petitions Committee, 2024,
<https://cmsdocs.s3.amazonaws.com/RedListGuidelines.pdf>): extent of
occurrence and area of occupancy for criterion B, and population reduction
for criterion A.
Author: Stanislas Mahussi Gandaho [aut, cre] ,
R Consortium [fnd]
Maintainer: Stanislas Mahussi Gandaho <stangandaho@gmail.com>
Diff between redlist versions 0.2.0 dated 2025-08-20 and 0.3.0 dated 2026-09-04
DESCRIPTION | 47 ++++++---- MD5 | 90 +++++++++++++++---- NAMESPACE | 8 + R/rl_aoo.R |only R/rl_check_occurrences.R |only R/rl_eoo.R |only R/rl_generation_length.R |only R/rl_name_resolve.R |only R/rl_occurrences.R |only R/rl_open_file.R |only R/rl_reduction.R |only R/rl_scientific_name.R | 80 ++++++++++++++++- R/utils.R | 163 ++++++++++++++++++++++------------- README.md | 116 +++++++++++++++++------- build/vignette.rds |binary inst/WORDLIST |only inst/doc/GBIF-and-IUCN-Red-List.R |only inst/doc/GBIF-and-IUCN-Red-List.Rmd |only inst/doc/GBIF-and-IUCN-Red-List.html |only inst/doc/criterion-a-reduction.R |only inst/doc/criterion-a-reduction.Rmd |only inst/doc/criterion-a-reduction.html |only inst/doc/data_visualisation.R | 6 - inst/doc/data_visualisation.Rmd | 6 - inst/doc/data_visualisation.html | 11 +- inst/doc/eoo-and-aoo.R |only inst/doc/eoo-and-aoo.Rmd |only inst/doc/eoo-and-aoo.html |only inst/doc/gallery.Rmd | 20 ++++ inst/doc/gallery.html | 23 ++++ inst/doc/get_data.R | 2 inst/doc/get_data.Rmd | 2 inst/doc/get_data.html | 5 - inst/doc/occurrence-workflow.R |only inst/doc/occurrence-workflow.Rmd |only inst/doc/occurrence-workflow.html |only inst/doc/profile-of-extinction.R |only inst/doc/profile-of-extinction.Rmd |only inst/doc/profile-of-extinction.html |only man/rl_aoo.Rd |only man/rl_check_occurrences.Rd |only man/rl_eoo.Rd |only man/rl_generation_length.Rd |only man/rl_name_resolve.Rd |only man/rl_occurrences.Rd |only man/rl_open_file.Rd | 2 man/rl_overall_reduction.Rd |only man/rl_reduction.Rd |only man/rl_scientific_name.Rd | 24 ++++- tests |only vignettes/GBIF-and-IUCN-Red-List.Rmd |only vignettes/criterion-a-reduction.Rmd |only vignettes/data |only vignettes/data_visualisation.Rmd | 6 - vignettes/eoo-and-aoo.Rmd |only vignettes/gallery.Rmd | 20 ++++ vignettes/gbif_iucn |only vignettes/get_data.Rmd | 2 vignettes/occurrence-workflow.Rmd |only vignettes/profile-of-extinction.Rmd |only 60 files changed, 476 insertions(+), 157 deletions(-)
Title: Signal and Image Processing Toolbox for Analyzing Intracranial
Electroencephalography Data
Description: Implemented fast and memory-efficient Notch-filter,
Welch-periodogram, discrete wavelet spectrogram for minutes of
high-resolution signals, fast 3D convolution, image registration,
3D mesh manipulation; providing fundamental toolbox for intracranial
Electroencephalography (iEEG) pipelines.
Documentation and examples about 'RAVE' project are provided at
<https://rave.wiki>, and the paper by John F. Magnotti,
Zhengjia Wang, Michael S. Beauchamp (2020)
<doi:10.1016/j.neuroimage.2020.117341>; see 'citation("ravetools")' for
details.
Author: Zhengjia Wang [aut, cre] ,
John Magnotti [aut],
Michael Beauchamp [aut],
Trustees of the University of Pennsylvania [cph] ,
Karim Rahim [cph, ctb] ,
Thomas Possidente [cph, ctb] ,
Michael Prerau [cph, ctb] ,
Marcus Geelnard [ctb, cph] ,
Stefan Schlag [...truncated...]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ravetools versions 0.3.1 dated 2026-08-31 and 0.3.2 dated 2026-09-04
DESCRIPTION | 8 ++--- MD5 | 22 +++++++------- NAMESPACE | 46 ++++++++++++++++-------------- NEWS.md | 5 +++ src/vcgCommon.cpp | 12 +++++++ src/vcglib/vcg/complex/algorithms/clean.h | 10 ++++++ src/vcglib/vcg/connectors/hedge.h | 4 +- src/vcglib/vcg/simplex/edge/base.h | 4 +- src/vcglib/vcg/simplex/face/base.h | 4 +- src/vcglib/vcg/simplex/tetrahedron/base.h | 4 +- src/vcglib/vcg/simplex/vertex/base.h | 4 +- tests/testthat/test-vcg-mesh-io.R | 16 ++++++++++ 12 files changed, 98 insertions(+), 41 deletions(-)
Title: Revealed Preference and Attention Analysis in Random Limited
Attention Models
Description: Implements identification, estimation, inference, and
specification procedures for random limited-attention models, including
the Random Attention Model of Cattaneo, Ma, Masatlioglu, and Suleymanov
(2020) <doi:10.1086/706861> and the Attention Overload Model of Cattaneo,
Cheung, Ma, and Masatlioglu (2026)
<doi:10.48550/arXiv.2110.10650>. The methods use standard choice data to
partially identify preferences and attention and provide
simulation-based procedures for statistical inference.
Author: Matias D. Cattaneo [aut, cre],
Paul Cheung [aut],
Xinwei Ma [aut],
Yusufcan Masatlioglu [aut],
Elchin Suleymanov [aut]
Maintainer: Matias D. Cattaneo <matias.d.cattaneo@gmail.com>
Diff between ramchoice versions 2.2 dated 2024-01-22 and 3.0.0 dated 2026-09-04
DESCRIPTION | 49 +++++++++++++++++++++++++++++------ MD5 | 53 ++++++++++++++++++++++++++------------ NAMESPACE | 29 +++++++++++++++++++- R/aom-milp.R |only R/aom.R |only R/auxiliaryFunctions.R | 63 ++++++++++++++++++++++++++++++--------------- R/clusterInference.R |only R/hlao-computation.R |only R/hlao.R |only R/ramchoice-package.R | 56 +++++++++++++++++++++++----------------- R/revealAtte.R | 10 +++---- R/revealPref.R | 34 +++++++++++++----------- R/revealPrefModel.R | 17 +++++------- build/partial.rdb |binary man/aomIdentify.Rd |only man/aomModel.Rd |only man/aomTest.Rd |only man/genMat.Rd | 8 ++--- man/hlaoEvent.Rd |only man/hlaoModel.Rd |only man/hlaoNoPITest.Rd |only man/hlaoRankings.Rd |only man/hlaoTest.Rd |only man/logitAtte.Rd | 12 ++++---- man/logitSimu.Rd | 12 ++++---- man/rAtte.Rd | 14 +++++----- man/ramTest.Rd |only man/ramchoice-package.Rd | 65 ++++++++++++++++++++++++++++++----------------- man/revealAtte.Rd | 10 +++---- man/revealPref.Rd | 14 +++++----- man/revealPrefModel.Rd | 16 +++++------ man/sumData.Rd | 8 ++--- tests |only 33 files changed, 300 insertions(+), 170 deletions(-)
Title: Post-Linkage Data Analysis
Description: Provides a suite of statistical tools for post-linkage data analysis (PLDA), designed to account for record linkage errors in downstream modeling. The package implements a familiar, formula-based regression interface that adjusts for linkage uncertainty, accommodating workflows where direct access to unlinked primary files is restricted. It consolidates diverse adjustment methodologies, all of which support generalized linear models (linear, logistic, Poisson, and Gamma). These methodologies include weighting approaches (Chambers (2009) <https://hdl.handle.net/10779/uow.27788247>; Chambers et al. (2023) <doi:10.1002/wics.1596>), mixture modeling (Slawski et al. (2025) <doi:10.1093/jrsssa/qnae083>), and Bayesian mixture modeling (Gutman et al. (2016) <doi:10.1002/sim.6586>). For time-to-event data, both the weighting (Vo et al. (2024) <doi:10.1002/sim.9960>) and mixture modeling approaches accommodate Cox proportional hazards models, while the Bayesian appr [...truncated...]
Author: Priyanjali Bukke [aut, cre],
Gauri Kamat [aut],
Jiahao Cui [aut],
Roee Gutman [aut],
Martin Slawski [aut],
Zhenbang Wang [ctb],
Brady T. West [ctb],
Emanuel Ben-David [ctb],
Guoqing Diao [ctb]
Maintainer: Priyanjali Bukke <postlink.group@gmail.com>
Diff between postlink versions 0.1.0 dated 2026-04-15 and 0.1.1 dated 2026-09-04
DESCRIPTION | 10 MD5 | 151 ++++++----- NAMESPACE | 108 ++++---- NEWS.md | 23 + R/00_generics.R |only R/01_adjELE_methods.R | 46 --- R/01_adjMixBayes.R | 16 + R/01_adjMixBayes_methods.R | 39 --- R/01_adjMixture_methods.R | 46 --- R/02_plcoxph.R | 6 R/02_plctable.R | 5 R/02_plglm.R | 6 R/02_plsurvreg.R | 5 R/LD1000.R |only R/ele_glm_methods.R | 5 R/mixbayes_glm.R | 17 + R/mixbayes_glm_methods.R | 44 +-- R/mixbayes_helpers.R | 83 +++++- R/mixbayes_survreg.R | 7 R/mixbayes_survreg_helpers.R | 25 + R/mixbayes_survreg_methods.R | 18 - R/mixture_coxph.R | 13 - R/mixture_coxph_methods.R | 13 - R/mixture_glm.R | 21 + R/mixture_glm_methods.R | 36 -- R/postlink-package.R | 10 README.md | 64 +++-- data/LD1000.rda |only inst/stan/glmMixBayes_binomial.stan | 30 +- inst/stan/glmMixBayes_gamma.stan | 17 + inst/stan/glmMixBayes_gaussian.stan | 17 + inst/stan/glmMixBayes_poisson.stan | 17 + inst/stan/survMixBayes_gamma.stan | 17 + inst/stan/survMixBayes_weibull.stan | 17 + man/LD1000.Rd |only man/adjMixBayes.Rd | 18 + man/coef.glmELE.Rd |only man/coef.glmMixBayes.Rd |only man/coef.glmMixture.Rd |only man/coef.survMixBayes.Rd |only man/confint.ctableMixture.Rd | 120 ++++----- man/confint.glmMixBayes.Rd | 2 man/confint.survMixBayes.Rd | 2 man/df.residual.plglm.Rd |only man/glmMixBayes.Rd | 9 man/mi_with.Rd | 2 man/mi_with.glmMixBayes.Rd | 2 man/mi_with.survMixBayes.Rd | 2 man/mixture_bayesglm_methods.Rd | 24 - man/mixture_bayessurvreg_methods.Rd | 24 - man/plcoxph.Rd | 194 +++++++-------- man/plctable.Rd | 166 ++++++------- man/plglm.Rd | 198 +++++++-------- man/plsurvreg.Rd | 194 +++++++-------- man/postlink-package.Rd | 233 +++++++++--------- man/predict.glmMixBayes.Rd | 4 man/predict.survMixBayes.Rd | 2 man/print.adjustment.Rd |only man/print.ctableMixture.Rd | 104 ++++---- man/print.glmMixBayes.Rd | 4 man/print.mi_link_pool_glm.Rd | 4 man/print.mi_link_pool_survreg.Rd | 4 man/print.survMixBayes.Rd | 2 man/summary.ctableMixture.Rd | 116 ++++----- man/summary.glmMixBayes.Rd | 4 man/summary.survMixBayes.Rd | 2 man/survregMixBayes.Rd | 9 man/unsupported_generics.Rd |only man/vcov.ctableMixture.Rd | 100 +++---- man/vcov.glmMixBayes.Rd | 4 man/vcov.survMixBayes.Rd | 2 src/Makevars |only src/stanExports_glmMixBayes_binomial.h | 213 ++++++++++------ src/stanExports_glmMixBayes_gamma.h | 263 ++++++++++++-------- src/stanExports_glmMixBayes_gaussian.h | 253 ++++++++++++-------- src/stanExports_glmMixBayes_poisson.h | 211 ++++++++++------ src/stanExports_survMixBayes_gamma.h | 311 ++++++++++++++---------- src/stanExports_survMixBayes_weibull.h | 353 ++++++++++++++++------------ tests/testthat/test-00_generics.R |only tests/testthat/test-01_adjELE_methods.R | 5 tests/testthat/test-01_adjMixture_methods.R | 5 tests/testthat/test-02_plcoxph.R | 3 tests/testthat/test-glmMixture.R | 13 - 83 files changed, 2323 insertions(+), 1790 deletions(-)
Title: Urban Environment Analysis Using Global Building Height Datasets
Description: Automated access and analysis of multidimensional building profile
in cities. The package provides tools to access, search, and download global
3D building footprint datasets.
It includes functions to retrieve building height tiles, compute a range of
2D/2.5D building morphology metrics, assess environmental context
(e.g., greenery accessibility), aggregate metrics to the city-block scale,
support noise, shadow/radiation, and wind simulation, export study areas as
3D scenes (terrain, buildings, canopy)
for 3D modeling software, such as Rhino3D and Blender.
Author: Xiaohao Yang [aut, cre, cph]
Maintainer: Xiaohao Yang <xiaohaoy111@gmail.com>
Diff between gloBFPr versions 0.1.3 dated 2025-06-18 and 2.0.0 dated 2026-09-04
gloBFPr-0.1.3/gloBFPr/R/search.R |only gloBFPr-0.1.3/gloBFPr/inst/doc/gloBFPr.R |only gloBFPr-0.1.3/gloBFPr/inst/doc/gloBFPr.Rmd |only gloBFPr-0.1.3/gloBFPr/inst/doc/gloBFPr.html |only gloBFPr-0.1.3/gloBFPr/vignettes/gloBFPr.Rmd |only gloBFPr-2.0.0/gloBFPr/DESCRIPTION | 42 gloBFPr-2.0.0/gloBFPr/MD5 | 116 gloBFPr-2.0.0/gloBFPr/NAMESPACE | 81 gloBFPr-2.0.0/gloBFPr/R/RcppExports.R |only gloBFPr-2.0.0/gloBFPr/R/block.R |only gloBFPr-2.0.0/gloBFPr/R/building_data.R |only gloBFPr-2.0.0/gloBFPr/R/data.R |only gloBFPr-2.0.0/gloBFPr/R/era5_met.R |only gloBFPr-2.0.0/gloBFPr/R/get_metadata.R | 13 gloBFPr-2.0.0/gloBFPr/R/mesh_utils.R |only gloBFPr-2.0.0/gloBFPr/R/metrics.R |only gloBFPr-2.0.0/gloBFPr/R/network_distance.R |only gloBFPr-2.0.0/gloBFPr/R/noise.R |only gloBFPr-2.0.0/gloBFPr/R/openfoam_case.R |only gloBFPr-2.0.0/gloBFPr/R/openfoam_docker.R |only gloBFPr-2.0.0/gloBFPr/R/openfoam_nocturnal.R |only gloBFPr-2.0.0/gloBFPr/R/openfoam_terrain.R |only gloBFPr-2.0.0/gloBFPr/R/prepare_openfoam_inputs.R |only gloBFPr-2.0.0/gloBFPr/R/shadow_radiation.R |only gloBFPr-2.0.0/gloBFPr/R/sysdata.rda |only gloBFPr-2.0.0/gloBFPr/R/utils.R | 4443 ++++++++++- gloBFPr-2.0.0/gloBFPr/R/world3d.R |only gloBFPr-2.0.0/gloBFPr/R/zzz.R |only gloBFPr-2.0.0/gloBFPr/build/vignette.rds |binary gloBFPr-2.0.0/gloBFPr/data |only gloBFPr-2.0.0/gloBFPr/inst/doc/block_analysis.R |only gloBFPr-2.0.0/gloBFPr/inst/doc/block_analysis.Rmd |only gloBFPr-2.0.0/gloBFPr/inst/doc/block_analysis.html |only gloBFPr-2.0.0/gloBFPr/inst/doc/building_metrics.R |only gloBFPr-2.0.0/gloBFPr/inst/doc/building_metrics.Rmd |only gloBFPr-2.0.0/gloBFPr/inst/doc/building_metrics.html |only gloBFPr-2.0.0/gloBFPr/inst/doc/data_acquisition.R |only gloBFPr-2.0.0/gloBFPr/inst/doc/data_acquisition.Rmd |only gloBFPr-2.0.0/gloBFPr/inst/doc/data_acquisition.html |only gloBFPr-2.0.0/gloBFPr/inst/doc/noise_mapping.R |only gloBFPr-2.0.0/gloBFPr/inst/doc/noise_mapping.Rmd |only gloBFPr-2.0.0/gloBFPr/inst/doc/noise_mapping.html |only gloBFPr-2.0.0/gloBFPr/inst/doc/shadow_radiation.R |only gloBFPr-2.0.0/gloBFPr/inst/doc/shadow_radiation.Rmd |only gloBFPr-2.0.0/gloBFPr/inst/doc/shadow_radiation.html |only gloBFPr-2.0.0/gloBFPr/inst/doc/wind_simulation.R |only gloBFPr-2.0.0/gloBFPr/inst/doc/wind_simulation.Rmd |only gloBFPr-2.0.0/gloBFPr/inst/doc/wind_simulation.html |only gloBFPr-2.0.0/gloBFPr/man/add_flow_vectors.Rd |only gloBFPr-2.0.0/gloBFPr/man/aggregate_block.Rd |only gloBFPr-2.0.0/gloBFPr/man/figures |only gloBFPr-2.0.0/gloBFPr/man/generate_block.Rd |only gloBFPr-2.0.0/gloBFPr/man/get_3d_world.Rd |only gloBFPr-2.0.0/gloBFPr/man/get_era5_met.Rd |only gloBFPr-2.0.0/gloBFPr/man/get_fused_dsm.Rd |only gloBFPr-2.0.0/gloBFPr/man/get_metadata.Rd | 5 gloBFPr-2.0.0/gloBFPr/man/get_metrics.Rd |only gloBFPr-2.0.0/gloBFPr/man/get_noise_map.Rd |only gloBFPr-2.0.0/gloBFPr/man/get_shadows.Rd |only gloBFPr-2.0.0/gloBFPr/man/ghsl_tiles.Rd |only gloBFPr-2.0.0/gloBFPr/man/globfp_example.Rd |only gloBFPr-2.0.0/gloBFPr/man/globfp_example_canopy_height.Rd |only gloBFPr-2.0.0/gloBFPr/man/globfp_example_dem.Rd |only gloBFPr-2.0.0/gloBFPr/man/infer_osm_traffic.Rd |only gloBFPr-2.0.0/gloBFPr/man/install_noisemodelling.Rd |only gloBFPr-2.0.0/gloBFPr/man/osm_noise_traffic_defaults.Rd |only gloBFPr-2.0.0/gloBFPr/man/plot_bgvi_viewshed.Rd |only gloBFPr-2.0.0/gloBFPr/man/plot_foam_map.Rd |only gloBFPr-2.0.0/gloBFPr/man/plot_noise_map.Rd |only gloBFPr-2.0.0/gloBFPr/man/prepare_foam_case.Rd |only gloBFPr-2.0.0/gloBFPr/man/prepare_foam_geometry.Rd |only gloBFPr-2.0.0/gloBFPr/man/prepare_noisemodelling_inputs.Rd |only gloBFPr-2.0.0/gloBFPr/man/prepare_openfoam_inputs.Rd |only gloBFPr-2.0.0/gloBFPr/man/read_foam_pedestrian_slice.Rd |only gloBFPr-2.0.0/gloBFPr/man/run_openfoam_docker.Rd |only gloBFPr-2.0.0/gloBFPr/man/sample_foam_slice.Rd |only gloBFPr-2.0.0/gloBFPr/man/search_3dglobdf.Rd | 63 gloBFPr-2.0.0/gloBFPr/src |only gloBFPr-2.0.0/gloBFPr/tests/testthat/test-building-data.R |only gloBFPr-2.0.0/gloBFPr/tests/testthat/test-metrics.R |only gloBFPr-2.0.0/gloBFPr/tests/testthat/test-noise.R |only gloBFPr-2.0.0/gloBFPr/tests/testthat/test-openfoam.R |only gloBFPr-2.0.0/gloBFPr/tests/testthat/test-search.R | 223 gloBFPr-2.0.0/gloBFPr/tests/testthat/test-shadow-radiation.R |only gloBFPr-2.0.0/gloBFPr/tests/testthat/test-world3d.R |only gloBFPr-2.0.0/gloBFPr/vignettes/block_analysis.Rmd |only gloBFPr-2.0.0/gloBFPr/vignettes/building_metrics.Rmd |only gloBFPr-2.0.0/gloBFPr/vignettes/data_acquisition.Rmd |only gloBFPr-2.0.0/gloBFPr/vignettes/noise_mapping.Rmd |only gloBFPr-2.0.0/gloBFPr/vignettes/shadow_radiation.Rmd |only gloBFPr-2.0.0/gloBFPr/vignettes/wind_simulation.Rmd |only 91 files changed, 4924 insertions(+), 62 deletions(-)
Title: Chat with Large Language Models
Description: Chat with large language models from a range of providers
including 'Claude' <https://claude.ai>, 'OpenAI'
<https://chatgpt.com>, and more. Supports streaming, asynchronous
calls, tool calling, and structured data extraction.
Author: Hadley Wickham [aut, cre] ,
Joe Cheng [aut],
Aaron Jacobs [aut],
Garrick Aden-Buie [aut] ,
Barret Schloerke [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between ellmer versions 0.4.2 dated 2026-07-13 and 0.5.0 dated 2026-09-04
ellmer-0.4.2/ellmer/tests/testthat/test-provider-github.R |only ellmer-0.5.0/ellmer/DESCRIPTION | 42 ellmer-0.5.0/ellmer/MD5 | 457 +- ellmer-0.5.0/ellmer/NAMESPACE | 19 ellmer-0.5.0/ellmer/NEWS.md | 46 ellmer-0.5.0/ellmer/R/batch-chat.R | 32 ellmer-0.5.0/ellmer/R/chat-structured.R | 5 ellmer-0.5.0/ellmer/R/chat-tools.R | 83 ellmer-0.5.0/ellmer/R/chat.R | 764 +++- ellmer-0.5.0/ellmer/R/content-document.R |only ellmer-0.5.0/ellmer/R/content-image.R | 5 ellmer-0.5.0/ellmer/R/content-pdf.R | 24 ellmer-0.5.0/ellmer/R/content-replay.R | 11 ellmer-0.5.0/ellmer/R/content.R | 131 ellmer-0.5.0/ellmer/R/ellmer-package.R | 1 ellmer-0.5.0/ellmer/R/files.R |only ellmer-0.5.0/ellmer/R/httr2.R | 45 ellmer-0.5.0/ellmer/R/model.R |only ellmer-0.5.0/ellmer/R/otel.R | 35 ellmer-0.5.0/ellmer/R/parallel-chat.R | 22 ellmer-0.5.0/ellmer/R/prices.R |only ellmer-0.5.0/ellmer/R/provider-aws-api.R |only ellmer-0.5.0/ellmer/R/provider-aws.R | 570 ++- ellmer-0.5.0/ellmer/R/provider-azure.R | 13 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Title: Run Predictions Inside the Database
Description: It parses a fitted 'R' model object, and returns a formula in
'Tidy Eval' code that calculates the predictions. It works with
several databases back-ends because it leverages 'dplyr' and 'dbplyr'
for the final 'SQL' translation of the algorithm. Dozens of model
classes are supported; see the "Supported models" article at
<https://tidypredict.tidymodels.org/articles/models.html> for the
current list.
Author: Emil Hvitfeldt [aut, cre] ,
Edgar Ruiz [aut],
Max Kuhn [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between tidypredict versions 1.1.1 dated 2026-08-24 and 1.2.0 dated 2026-09-04
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tidypredict-1.2.0/tidypredict/tests/testthat/test-model-cubist.R | 399 +++- tidypredict-1.2.0/tidypredict/tests/testthat/test-model-earth.R | 280 ++ tidypredict-1.2.0/tidypredict/tests/testthat/test-model-fda.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-glm.R | 144 + tidypredict-1.2.0/tidypredict/tests/testthat/test-model-glmnet.R | 364 +++ tidypredict-1.2.0/tidypredict/tests/testthat/test-model-ksvm.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-lda.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-liblinear.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-lightgbm.R | 985 +++++++++- tidypredict-1.2.0/tidypredict/tests/testthat/test-model-lm.R | 326 +++ tidypredict-1.2.0/tidypredict/tests/testthat/test-model-mboost.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-mixOmics.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-multinom.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-naivebayes.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-nnet.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-nullmodel.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-partykit.R | 358 +++ tidypredict-1.2.0/tidypredict/tests/testthat/test-model-qda.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-ranger.R | 669 ++++-- tidypredict-1.2.0/tidypredict/tests/testthat/test-model-rf.R | 335 +++ tidypredict-1.2.0/tidypredict/tests/testthat/test-model-rpart.R | 258 ++ tidypredict-1.2.0/tidypredict/tests/testthat/test-model-rq.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-sda.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-sparsediscrim.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-model-xgboost.R | 361 +++ tidypredict-1.2.0/tidypredict/tests/testthat/test-model-xrf.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-output-metadata.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-parsemodel.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-predict-column.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-predict-fit.R | 96 tidypredict-1.2.0/tidypredict/tests/testthat/test-predict-interval.R | 30 tidypredict-1.2.0/tidypredict/tests/testthat/test-save.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-sql.R | 82 tidypredict-1.2.0/tidypredict/tests/testthat/test-test-results.R |only tidypredict-1.2.0/tidypredict/tests/testthat/test-tidymodels.R | 575 +++++ tidypredict-1.2.0/tidypredict/tests/testthat/test-tree-nested.R | 46 tidypredict-1.2.0/tidypredict/tests/testthat/test-tree.R | 84 tidypredict-1.2.0/tidypredict/vignettes/C5.0.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/aorsf.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/bagging.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/bart.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/cubist.Rmd | 3 tidypredict-1.2.0/tidypredict/vignettes/fda.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/float-precision.Rmd | 4 tidypredict-1.2.0/tidypredict/vignettes/glm.Rmd | 82 tidypredict-1.2.0/tidypredict/vignettes/glmnet.Rmd | 7 tidypredict-1.2.0/tidypredict/vignettes/h2o.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/ksvm.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/lda.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/lightgbm.Rmd | 2 tidypredict-1.2.0/tidypredict/vignettes/lm.Rmd | 38 tidypredict-1.2.0/tidypredict/vignettes/mars.Rmd | 4 tidypredict-1.2.0/tidypredict/vignettes/mboost.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/mixOmics.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/models.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/multinom.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/naivebayes.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/nnet.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/non-r.Rmd | 2 tidypredict-1.2.0/tidypredict/vignettes/nullmodel.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/partykit.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/qda.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/ranger.Rmd | 10 tidypredict-1.2.0/tidypredict/vignettes/regression.Rmd | 2 tidypredict-1.2.0/tidypredict/vignettes/rf.Rmd | 10 tidypredict-1.2.0/tidypredict/vignettes/rpart.Rmd | 18 tidypredict-1.2.0/tidypredict/vignettes/save.Rmd | 34 tidypredict-1.2.0/tidypredict/vignettes/sda.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/sparsediscrim.Rmd |only tidypredict-1.2.0/tidypredict/vignettes/sql.Rmd | 28 tidypredict-1.2.0/tidypredict/vignettes/tree.Rmd | 2 tidypredict-1.2.0/tidypredict/vignettes/xgboost.Rmd | 2 tidypredict-1.2.0/tidypredict/vignettes/xrf.Rmd |only 357 files changed, 11346 insertions(+), 3601 deletions(-)
Title: A Simple Package for Testing R Packages
Description: A minimal, dependency-free testing framework for R packages.
Write tests as simple R expressions that return TRUE, using assert() for
assertions (with informative error messages on failure), has_error() /
has_warning() / has_message() for testing conditions, and test_pkg() to
run all tests with full access to internal (non-exported) package
functions. Snapshot testing via Markdown files is also supported.
Author: Yihui Xie [aut, cre] ,
Tomas Kalibera [ctb],
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 1.1 dated 2026-06-18 and 1.1.2 dated 2026-09-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/testit.R | 10 +++++++++- 3 files changed, 14 insertions(+), 6 deletions(-)
Title: Installing and Loading R Packages for Reproducible Workflows
Description: A single key function, 'Require' that makes rerun-tolerant
versions of 'install.packages' and 'require' for CRAN packages, packages
no longer on CRAN (i.e., archived), specific versions of packages,
and GitHub packages. This approach is developed to create reproducible
workflows that are flexible and fast enough to use while in development stages,
while able to build snapshots once a stable package collection is found.
As with other functions in a reproducible workflow, this package
emphasizes functions that return the same result whether it is
the first or subsequent times running the function, with subsequent times being
sufficiently fast that they can be run every time without undue waiting burden on
the user or developer.
Author: Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [ctb] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between Require versions 2.1.0 dated 2026-08-29 and 2.1.1 dated 2026-09-04
Require-2.1.0/Require/tests/testthat/test-16parentChain_integration_testthat.R |only Require-2.1.1/Require/DESCRIPTION | 8 Require-2.1.1/Require/MD5 | 26 - Require-2.1.1/Require/NEWS.md | 33 ++ Require-2.1.1/Require/R/Require-helpers.R | 53 +-- Require-2.1.1/Require/R/Require2.R | 8 Require-2.1.1/Require/R/pak.R | 16 - Require-2.1.1/Require/README.md | 2 Require-2.1.1/Require/inst/WORDLIST | 1 Require-2.1.1/Require/tests/testthat/helper_0.R | 8 Require-2.1.1/Require/tests/testthat/setup.R | 42 ++ Require-2.1.1/Require/tests/testthat/test-09splitGitRepo_testthat.R |only Require-2.1.1/Require/tests/testthat/test-14coverage2_testthat.R | 9 Require-2.1.1/Require/tests/testthat/test-15bugfixes_testthat.R | 94 ------ Require-2.1.1/Require/tests/testthat/test-18nosudo_testthat.R | 154 ++++++++-- 15 files changed, 290 insertions(+), 164 deletions(-)
Title: Parallelized Minimum Redundancy, Maximum Relevance (mRMR)
Description: Computes mutual information matrices from continuous, categorical
and survival variables, as well as feature selection with minimum redundancy,
maximum relevance (mRMR) and a new ensemble mRMR technique. Published in
De Jay et al. (2013) <doi:10.1093/bioinformatics/btt383>.
Author: Nicolas De Jay [aut],
Simon Papillon-Cavanagh [aut],
Catharina Olsen [aut],
Gianluca Bontempi [aut],
Bo Li [aut],
Christopher Eeles [ctb],
Benjamin Haibe-Kains [aut, cre]
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Diff between mRMRe versions 2.1.2.2 dated 2024-11-05 and 2.1.3.1 dated 2026-09-04
DESCRIPTION | 11 +++++----- MD5 | 30 ++++++++++++++--------------- R/mRMRe.Filter.R | 2 - build/vignette.rds |binary data/cgps.rda |binary inst/CITATION | 41 ++++++++++++++++++++++++++++------------ inst/doc/mRMRe.pdf |binary man/correlate.Rd | 12 +++++------ man/export_concordance_index.Rd | 25 +++--------------------- man/export_filters.Rd | 29 +++------------------------- man/export_filters_bootstrap.Rd | 30 +++-------------------------- man/export_mim.Rd | 25 +++--------------------- man/get_thread_count.Rd | 17 +++++++--------- man/mRMRe.Data-class.Rd | 10 ++++----- man/set_thread_count.Rd | 17 +++++++--------- src/exports.cpp | 28 +++++++++++++-------------- 16 files changed, 108 insertions(+), 169 deletions(-)
Title: Presentation-Ready Data Summary and Analytic Result Tables
Description: Creates presentation-ready tables summarizing data sets,
regression models, and more. The code to create the tables is concise
and highly customizable. Data frames can be summarized with any
function, e.g. mean(), median(), even user-written functions.
Regression models are summarized and include the reference rows for
categorical variables. Common regression models, such as logistic
regression and Cox proportional hazards regression, are automatically
identified and the tables are pre-filled with appropriate column
headers.
Author: Daniel D. Sjoberg [aut, cre] ,
Joseph Larmarange [aut] ,
Michael Curry [aut] ,
Emily de la Rua [aut] ,
Jessica Lavery [aut] ,
Karissa Whiting [aut] ,
Emily C. Zabor [aut] ,
Xing Bai [ctb],
Malcolm Barrett [ctb] ,
Esther Drill [ctb] ,
Jessica Flynn [c [...truncated...]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between gtsummary versions 2.6.0 dated 2026-08-25 and 2.6.1 dated 2026-09-04
DESCRIPTION | 6 MD5 | 21 NEWS.md | 8 R/plot.R | 1 R/save_flex_docx.R | 1138 +++++++++++++++--------------- R/tbl_summary.R | 139 ++- R/utils-as.R | 373 +++++---- inst/WORDLIST | 5 inst/doc/gtsummary_definition.html | 1100 ++++++++++++++-------------- man/save_flex_docx.Rd | 50 - tests/testthat/test-plot.tbl_regression.R | 16 tests/testthat/test-utils-as.R |only 12 files changed, 1482 insertions(+), 1375 deletions(-)
Title: Psychometric Functions from the Waller Lab
Description: Computes fungible coefficients and Monte Carlo data. Underlying theory for these functions is described in the following publications:
Waller, N. (2008). Fungible Weights in Multiple Regression. Psychometrika, 73(4), 691-703, <DOI:10.1007/s11336-008-9066-z>.
Waller, N. & Jones, J. (2009). Locating the Extrema of Fungible Regression Weights.
Psychometrika, 74(4), 589-602, <DOI:10.1007/s11336-008-9087-7>.
Waller, N. G. (2016). Fungible Correlation Matrices:
A Method for Generating Nonsingular, Singular, and Improper Correlation Matrices for
Monte Carlo Research. Multivariate Behavioral Research, 51(4), 554-568.
Jones, J. A. & Waller, N. G. (2015). The normal-theory and asymptotic distribution-free (ADF)
covariance matrix of standardized regression coefficients: theoretical extensions
and finite sample behavior. Psychometrika, 80, 365-378, <DOI:10.1007/s11336-013-9380-y>.
Waller, N. G. (2018). Direct Schmid-Leiman transformations and rank-deficient loadings mat [...truncated...]
Author: Niels Waller [aut, cre],
Justin Kracht [ctb],
Jeff Jones [ctb],
Casey Giordano [ctb],
Hoang V Nguyen [ctb]
Maintainer: Niels Waller <nwaller@umn.edu>
Diff between fungible versions 2.4.7 dated 2026-04-07 and 2.4.8 dated 2026-09-04
DESCRIPTION | 33 + MD5 | 64 +-- NAMESPACE | 58 ++- R/FMP.R | 3 inst/CITATION | 4 inst/doc/simulate-model-error.html | 611 ++++++++++++++++++++++++++++++------- man/BiFAD.Rd | 50 +-- man/Box26.Rd | 52 +-- man/FMP.Rd | 2 man/GenerateBoxData.Rd | 50 +-- man/Ledermann.Rd | 50 +-- man/SLi.Rd | 50 +-- man/SchmidLeiman.Rd | 50 +-- man/faAlign.Rd | 50 +-- man/faEKC.Rd | 50 +-- man/faIB.Rd | 50 +-- man/faLocalMin.Rd | 50 +-- man/faMB.Rd | 50 +-- man/faMain.Rd | 50 +-- man/faScores.Rd | 50 +-- man/faSort.Rd | 50 +-- man/faStandardize.Rd | 50 +-- man/faX.Rd | 50 +-- man/fals.Rd | 50 +-- man/fapa.Rd | 50 +-- man/fareg.Rd | 50 +-- man/fsIndeterminacy.Rd | 50 +-- man/orderFactors.Rd | 50 +-- man/print.faMB.Rd | 50 +-- man/print.faMain.Rd | 50 +-- man/promaxQ.Rd | 50 +-- man/summary.faMB.Rd | 50 +-- man/summary.faMain.Rd | 50 +-- 33 files changed, 1245 insertions(+), 832 deletions(-)
Title: A Distributed Worker Launcher Framework
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services.
The 'NNG'-powered 'mirai' R package by Gao (2023)
<doi:10.5281/zenodo.7912722> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages.
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre] ,
Daniel Woodie [ctb],
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between crew versions 1.3.2 dated 2026-07-30 and 1.3.3 dated 2026-09-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/crew_tls.R | 15 ++++++++++----- 4 files changed, 20 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-14 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-14 1.1.2
2019-02-04 1.1.1
2016-12-08 1.1.0
Title: Dynamically Generate 'Quarto' Syntax
Description: Provides helper functions to work programmatically within a 'Quarto' document. It allows
the user to create section headers, tabsets, divs, and spans, and formats these objects
into 'Quarto' syntax when printed into a document.
Author: Danielle Navarro [aut, cre, cph]
Maintainer: Danielle Navarro <djnavarro@protonmail.com>
Diff between quartose versions 0.2.0 dated 2026-07-25 and 0.2.1 dated 2026-09-04
DESCRIPTION | 10 +-- MD5 | 22 ++++---- NEWS.md | 24 ++++++++ R/class.R | 12 ++-- R/format.R | 110 ++++++++++++++++++++++++++++++----------- R/validate.R | 20 ++++++- inst/WORDLIST | 3 + man/quarto_format.Rd | 43 ++++++++++------ man/quarto_object.Rd | 12 ++-- tests/spelling.R | 12 +--- tests/testthat/test-format.R | 105 +++++++++++++++++++++++++++++++++++++++ tests/testthat/test-validate.R | 55 ++++++++++++++++++++ 12 files changed, 351 insertions(+), 77 deletions(-)