Title: Taxonomic Name Reconciliation Against the 'WCVP' Backbone
Description: Standardizes and reconciles scientific plant names against
a World Checklist of Vascular Plants ('WCVP')-style taxonomic
backbone. The package parses names into taxonomic components and
applies staged exact and fuzzy matching for binomial and trinomial
inputs, including infraspecific rank-aware checks. It also returns
accepted-name context and row-level matching flags to support
reproducible, auditable preprocessing for downstream biodiversity,
spatial, and trait analyses. A user-supplied backbone can be passed
through 'target_df'; when the optional companion package 'wcvpdata'
is installed, its default checklist can also be used.
Author: Paul Efren Santos Andrade [aut, cre, cph]
Maintainer: Paul Efren Santos Andrade <paulefrens@gmail.com>
Diff between wcvpmatch versions 0.0.1 dated 2026-03-23 and 0.0.2 dated 2026-09-08
DESCRIPTION | 16 MD5 | 92 +-- NAMESPACE | 10 R/build_tbl.R | 2 R/direct_match.R | 186 ++---- R/direct_match_species_within_genus.R | 29 R/distribution.R |only R/fuzzy_match_genus.R | 64 +- R/fuzzy_match_species_within_genus.R | 60 -- R/genus_match.R | 5 R/global.R | 53 + R/match_infraspecies_within_species.R | 32 - R/matching.R | 59 +- R/prefilter_target_by_genus.R | 129 +++- R/setup_info.R | 11 R/suffix_match_species_within_genus.R | 54 + R/synonyms.R |only R/utils.R | 283 ++++++++- README.md | 468 ++++------------ build |only inst |only man/build_genus_index.Rd | 9 man/classify_spnames.Rd | 2 man/prefilter_target_by_genus.Rd | 9 man/wcvp_direct_match.Rd | 10 man/wcvp_direct_match_species_within_genus.Rd | 3 man/wcvp_distribution.Rd |only man/wcvp_fuzzy_match_genus.Rd | 9 man/wcvp_fuzzy_match_species_within_genus.Rd | 3 man/wcvp_genus_match.Rd | 3 man/wcvp_matching.Rd | 22 man/wcvp_setup_info.Rd | 3 man/wcvp_suffix_match_species_within_genus.Rd | 9 man/wcvp_synonyms.Rd |only man/wcvpmatch-package.Rd | 6 tests/testthat/helper-wcvpdata.R | 6 tests/testthat/test-direct_match.R | 6 tests/testthat/test-direct_match_species_within_genus.R | 62 +- tests/testthat/test-distribution.R |only tests/testthat/test-fuzzy_match_genus.R | 16 tests/testthat/test-fuzzy_match_species_within_genus.R | 14 tests/testthat/test-genus_match.R | 8 tests/testthat/test-matching-infraspecies.R | 4 tests/testthat/test-matching.R | 99 +++ tests/testthat/test-performance-internals.R |only tests/testthat/test-prefilter-target-by-genus.R | 66 ++ tests/testthat/test-suffix_match_species_within_genus.R | 35 - tests/testthat/test-synonyms.R |only vignettes |only 49 files changed, 1184 insertions(+), 773 deletions(-)
Title: Worked Derivations for Classical Epidemiological Measures
Description: Computes classical epidemiological measures and returns the
complete worked derivation alongside the result: every intermediate
quantity, the formula, and the formula with the observed numbers
substituted in. Intended for teaching, for checking hand calculations,
and for generating worked solutions in course materials. Scope is
deliberately limited to methods a student can compute by hand on paper.
Methods follow Mantel and Haenszel (1959) <doi:10.1093/jnci/22.4.719>,
Greenland and Robins (1985, Biometrics 41, 55-68), Robins, Breslow and
Greenland (1986, Biometrics 42, 311-323), and Breslow and Day (1980,
IARC Scientific Publications No. 32).
Author: Raj Subedi [aut, cre]
Maintainer: Raj Subedi <rajsubediresearch@gmail.com>
Diff between epibyhand versions 0.1.0 dated 2026-08-05 and 0.2.0 dated 2026-09-08
DESCRIPTION | 8 +-- MD5 | 33 +++++++------ NAMESPACE | 1 NEWS.md | 24 +++++++++ R/derivation.R | 24 +++++++++ R/epi2x2.R | 21 ++++++++ R/measures.R | 8 +-- R/screening.R |only README.md | 39 ++++++++++++++- inst/CITATION | 1 inst/doc/epibyhand.R | 18 +++++++ inst/doc/epibyhand.Rmd | 35 ++++++++++++++ inst/doc/epibyhand.html | 90 ++++++++++++++++++++++++++++++++---- man/confint.epibyhand_derivation.Rd | 13 ++++- man/epibyhand-package.Rd | 5 ++ man/predictive_value.Rd |only tests/testthat/test-confint.R |only tests/testthat/test-labels.R |only tests/testthat/test-screening.R |only vignettes/epibyhand.Rmd | 35 ++++++++++++++ 20 files changed, 317 insertions(+), 38 deletions(-)
Title: Generalized Propensity Score Estimation and Matching for
Multiple Groups
Description: Implements the Vector Matching algorithm to match multiple
treatment groups based on previously estimated generalized propensity
scores. The package includes tools for visualizing initial confounder
imbalances, estimating treatment assignment probabilities using various
methods, defining the common support region, performing matching across
multiple groups, and evaluating matching quality. For more details, see
Lopez and Gutman (2017) <doi:10.1214/17-STS612>.
Author: Mateusz Kolek [aut, cre, cph]
Maintainer: Mateusz Kolek <mati.kolek13@gmail.com>
Diff between vecmatch versions 1.3.0 dated 2025-12-01 and 1.4.0 dated 2026-09-08
DESCRIPTION | 9 MD5 | 46 ++-- NEWS.md | 108 +++++++++ R/balqual.R | 302 +++++++++++++++++++++++++-- R/chk-utils.R | 21 - R/csregion.R | 43 +++ R/match_gps.R | 38 ++- R/optimize_gps.R | 26 ++ R/raincloud.R | 11 - R/utils.R | 343 +++++++++++++++++++++++++++++++ README.md | 9 inst/doc/optimizing-matching.html | 64 ++--- inst/doc/vecmatch.R | 17 + inst/doc/vecmatch.Rmd | 39 +++ inst/doc/vecmatch.html | 262 ++++++++++++++++++++---- man/balqual.Rd | 89 +++++++- man/match_gps.Rd | 6 man/vecmatch-package.Rd | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test-balqual.R | 403 +++++++++++++++++++++++++++++++++++++ tests/testthat/test-csregion.R | 76 ++++++ tests/testthat/test-match_gps.R | 176 ++++++++++++++++ tests/testthat/test-optimize_gps.R | 49 ++++ vignettes/vecmatch.Rmd | 39 +++ 24 files changed, 2005 insertions(+), 172 deletions(-)
Title: Feature-Based Clustering of Longitudinal Trajectories
Description: Identifies clusters of individual longitudinal trajectories. In the spirit of Leffondre et al. (2004), the procedure involves identifying each trajectory to a point in the space of measures. In this context, a measure is a quantity meant to capture a certain characteristic feature of the trajectory. The points in the space of measures are then clustered using a version of the Spectral Clustering algorithm.
Author: Marie-Pierre Sylvestre [aut],
Laurence Boulanger [aut, cre],
Jean-Benoit Bergeron [ctb],
Gillis Delmas [ctb],
Tchouangue Dinkou [ctb],
Dan Vatnik [ctb]
Maintainer: Laurence Boulanger <laurence.boulanger@umontreal.ca>
Diff between traj versions 3.0.1 dated 2026-03-15 and 3.1.0 dated 2026-09-08
traj-3.0.1/traj/data/trajdata.rda |only traj-3.1.0/traj/DESCRIPTION | 21 - traj-3.1.0/traj/MD5 | 47 +- traj-3.1.0/traj/NAMESPACE | 41 +- traj-3.1.0/traj/NEWS.md | 12 traj-3.1.0/traj/R/CubeRoot.R | 1 traj-3.1.0/traj/R/Der.R | 14 traj-3.1.0/traj/R/FctMean.R | 5 traj-3.1.0/traj/R/First.R | 3 traj-3.1.0/traj/R/FirstMode.R | 3 traj-3.1.0/traj/R/Last.R | 3 traj-3.1.0/traj/R/data.R | 14 traj-3.1.0/traj/R/plot.trajClusters.R | 499 +++++++++++++++++++++---------- traj-3.1.0/traj/R/quiet.R | 2 traj-3.1.0/traj/R/spect.R | 103 +++--- traj-3.1.0/traj/R/trajClusters.R | 386 ++++++++++++++--------- traj-3.1.0/traj/R/trajMeasures.R | 344 ++++++++------------- traj-3.1.0/traj/R/trajReduce.R | 55 +-- traj-3.1.0/traj/R/zzz.R |only traj-3.1.0/traj/data/trajdata.RData |only traj-3.1.0/traj/man/plot.trajClusters.Rd | 16 traj-3.1.0/traj/man/traj-package.Rd | 5 traj-3.1.0/traj/man/trajClusters.Rd | 18 - traj-3.1.0/traj/man/trajMeasures.Rd | 29 + traj-3.1.0/traj/man/trajReduce.Rd | 7 traj-3.1.0/traj/man/trajdata.Rd | 14 26 files changed, 970 insertions(+), 672 deletions(-)
Title: Methods for Penetrance Estimation in Family-Based Studies
Description: Implements statistical methods for estimating disease penetrance in
family-based studies. Penetrance refers to the probability of disease
manifestation in individuals carrying specific genetic variants. The package
provides tools for age-specific penetrance estimation, handling missing data,
and accounting for ascertainment bias in family studies.
Cite as: Kubista, N., Braun, D. & Parmigiani, G. (2025) <doi:10.1093/bioadv/vbaf154>.
Author: Sol Rosito [cre],
Nicolas Kubista [aut],
BayesMendel Lab [aut],
Giovanni Parmigiani [aut],
Danielle Braun [aut],
Zaid Al-Ississ [aut],
Alice Zhang [aut]
Maintainer: Sol Rosito <bmendel@jimmy.harvard.edu>
Diff between penetrance versions 0.1.3 dated 2026-05-15 and 0.1.4 dated 2026-09-08
DESCRIPTION | 10 - MD5 | 28 +-- R/imputeAges.R | 63 +----- R/mhChain.R | 358 +++++++++++++++++---------------------- R/mhLoglikehood.r | 194 ++++++++------------- R/outputHelpers.R | 254 +++++++-------------------- R/penetranceMain.R | 4 R/priorElicitation.R | 19 +- README.md | 286 ++++++++++++++++--------------- data/simulated_families.RData |binary data/test_fam2.RData |binary man/apply_burn_in.Rd | 2 man/calculateEmpiricalDensity.Rd | 15 + man/makePriors.Rd | 2 man/penetrance.Rd | 1 15 files changed, 541 insertions(+), 695 deletions(-)
Title: Seamless 'Nonmem' Simulation Platform
Description: A complete and seamless 'Nonmem' simulation interface within R. Turns 'Nonmem' control streams into simulation control streams, executes them with specified simulation input data and returns the results. The simulation is performed by 'Nonmem', eliminating manual work and risks of re-implementation of models in other tools.
Author: Philip Delff [aut, cre],
Brian Reilly [ctb],
Sanaya Shroff [ctb],
Boris Grinshpun [ctb]
Maintainer: Philip Delff <philip@delff.dk>
Diff between NMsim versions 0.2.7 dated 2026-03-19 and 0.2.8 dated 2026-09-08
NMsim-0.2.7/NMsim/R/NMwriteSectionOne.R |only NMsim-0.2.7/NMsim/inst/examples/data/xgxr032_bs.csv |only NMsim-0.2.7/NMsim/inst/examples/data/xgxr032_bs.rds |only NMsim-0.2.7/NMsim/inst/examples/data/xgxr032_bs_meta.txt |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr033.coi |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr033.cor |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr033.phi |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr033.pnm |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr033.shk |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr033_etas.txt |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr033_input.rds |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr033_res.txt |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr044.mod |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr044.pnm |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr044_input.rds |only NMsim-0.2.7/NMsim/inst/examples/nonmem/xgxr132.mod |only NMsim-0.2.7/NMsim/inst/examples/outputs |only NMsim-0.2.7/NMsim/man/figures/ACOP_logo_transp.png |only NMsim-0.2.7/NMsim/tests/simres |only NMsim-0.2.7/NMsim/tests/testOutput2 |only NMsim-0.2.7/NMsim/tests/testthat/simres |only NMsim-0.2.7/NMsim/tests/testthat/testData/data/pred_data1.csv |only NMsim-0.2.7/NMsim/tests/testthat/testData/data/pred_data1.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/data/pred_data1_meta.txt |only NMsim-0.2.7/NMsim/tests/testthat/testData/data/xgxr12.csv |only NMsim-0.2.7/NMsim/tests/testthat/testData/data/xgxr12.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/data/xgxr12_meta.txt |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/NMsim_xgxr021_default_01_paths.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/NMsim_xgxr021_default_01_paths_res.fst |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/predu_sd3_NWPRI |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/predu_sd3_NWPRI_MetaData.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_default_01 |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_default_01.73 |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_default_01.73_MetaData.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_default_01.74 |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_default_01.74_MetaData.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_default_01_paths.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_default_01_paths_res.fst |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_known_01 |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_known_01_paths.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_known_01_paths_res.fst |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_nmtranfail_paths.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr025_noname |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr057_NWPRI_04 |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr057_NWPRI_04_MetaData.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr057_NWPRI_04_ResultsData.fst |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/backup_xgxr057 |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/pred030.pnm |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/pred030.shk |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/pred030_input.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/pred030_res.txt |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/xgxr021_sd1_NMreadSim |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/xgxr021com.mod |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/xgxr033_input.rds |only NMsim-0.2.7/NMsim/tests/testthat/testData/nonmem/xgxr053.coi |only 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NMsim-0.2.8/NMsim/R/NMsim_NWPRI.R | 9 NMsim-0.2.8/NMsim/R/NMsim_VarCov.R | 2 NMsim-0.2.8/NMsim/R/NMsim_helpers.R | 43 NMsim-0.2.8/NMsim/R/NMwriteInits.R | 26 NMsim-0.2.8/NMsim/R/NMwriteInitsOne.R | 335 ++-- NMsim-0.2.8/NMsim/R/NMwriteSizes.R | 4 NMsim-0.2.8/NMsim/R/addEVID2.R | 14 NMsim-0.2.8/NMsim/R/cleaningPatterns.R | 9 NMsim-0.2.8/NMsim/R/forestSummarize.R | 3 NMsim-0.2.8/NMsim/R/isSame.R |only NMsim-0.2.8/NMsim/R/prioritizePaths.R | 2 NMsim-0.2.8/NMsim/R/sampleCovs.R | 116 + NMsim-0.2.8/NMsim/R/simPopEtas.R | 7 NMsim-0.2.8/NMsim/R/stringToSection.R |only NMsim-0.2.8/NMsim/R/typicalize.R | 22 NMsim-0.2.8/NMsim/README.md | 75 - NMsim-0.2.8/NMsim/inst/examples/derived/dat_sim1.rds |binary NMsim-0.2.8/NMsim/man/NMreadSim.Rd | 110 - NMsim-0.2.8/NMsim/man/NMreadSimModTab.Rd | 80 - NMsim-0.2.8/NMsim/man/NMreadSimModTabOne.Rd | 83 - NMsim-0.2.8/NMsim/man/NMsim.Rd | 159 +- NMsim-0.2.8/NMsim/man/NMwriteInits.Rd | 2 NMsim-0.2.8/NMsim/man/figures/README-simple-sim-1.png |binary NMsim-0.2.8/NMsim/man/prioritizePaths.Rd | 3 NMsim-0.2.8/NMsim/man/sampleCovs.Rd | 69 NMsim-0.2.8/NMsim/man/simPopEtas.Rd | 6 NMsim-0.2.8/NMsim/man/stringToSection.Rd |only NMsim-0.2.8/NMsim/tests/testthat/simres-known |only NMsim-0.2.8/NMsim/tests/testthat/testData/keepsimtmp |only NMsim-0.2.8/NMsim/tests/testthat/testData/nonmem/NMexec.pnm |only NMsim-0.2.8/NMsim/tests/testthat/testData/nonmem/NMsim/predu_sd2_NWPRI/NMsimData_predu_sd2_NWPRI.rds |binary NMsim-0.2.8/NMsim/tests/testthat/testData/nonmem/NMsim/predu_sd2_NWPRI/predu_sd2_NWPRI.mod | 4 NMsim-0.2.8/NMsim/tests/testthat/testData/nonmem/NMsim/predu_sd2_NWPRI_MetaData.rds |binary NMsim-0.2.8/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_nmtranfail/NMsimData_xgxr021_nmtranfail.csv | 10 NMsim-0.2.8/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_nmtranfail/NMsimData_xgxr021_nmtranfail.rds |binary NMsim-0.2.8/NMsim/tests/testthat/testData/nonmem/NMsim/xgxr021_nmtranfail/xgxr021_nmtranfail.ext |only 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NMsim-0.2.8/NMsim/tests/testthat/testData/simres/xgxr032_sd1_tabvars_MetaData.rds |only NMsim-0.2.8/NMsim/tests/testthat/testData/simres/xgxr032_sd1_tabvars_MetaData_ResultsData.fst |only NMsim-0.2.8/NMsim/tests/testthat/testReference/NMreadSim_01.rds |binary NMsim-0.2.8/NMsim/tests/testthat/testReference/NMreadSim_02.rds |binary NMsim-0.2.8/NMsim/tests/testthat/testReference/NMreadSim_03.rds |binary NMsim-0.2.8/NMsim/tests/testthat/testReference/NMreadSim_04.rds |only NMsim-0.2.8/NMsim/tests/testthat/testReference/NMreadSim_05.rds |only NMsim-0.2.8/NMsim/tests/testthat/testReference/NMrunLin_01.rds |only NMsim-0.2.8/NMsim/tests/testthat/testReference/NMsim_11.rds |binary NMsim-0.2.8/NMsim/tests/testthat/testReference/NMsim_NWPRI_03.rds |binary NMsim-0.2.8/NMsim/tests/testthat/testReference/NMsim_NWPRI_03_THETAPV.rds |only NMsim-0.2.8/NMsim/tests/testthat/testReference/summaryNMsimRes_01.rds |only NMsim-0.2.8/NMsim/tests/testthat/testReference/typicalize_02.rds |binary NMsim-0.2.8/NMsim/tests/testthat/test_NMreadSim.R | 447 ++++-- NMsim-0.2.8/NMsim/tests/testthat/test_NMrunLin.R |only NMsim-0.2.8/NMsim/tests/testthat/test_NMsim.R | 32 NMsim-0.2.8/NMsim/tests/testthat/test_NMsim_NWPRI.R | 8 NMsim-0.2.8/NMsim/tests/testthat/test_isSame.R |only NMsim-0.2.8/NMsim/tests/testthat/test_sampleCovs.R | 44 NMsim-0.2.8/NMsim/tests/testthat/test_simplePath.R | 18 NMsim-0.2.8/NMsim/tests/testthat/test_summaryNMsimRes.R |only NMsim-0.2.8/NMsim/tests/testthat/test_typicalize.R | 5 166 files changed, 2232 insertions(+), 1534 deletions(-)
Title: Native and Extensible R Driver for 'Zarr'
Description: The 'Zarr' specification is widely used to build libraries for the storage and retrieval of n-dimensional array data from data stores ranging from local file systems to the cloud. This package is a native 'Zarr' implementation in R with support for all required features of 'Zarr' version 3. It is designed to be extensible such that new stores, codecs and extensions can be added easily.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between zarr versions 0.5.0 dated 2026-08-30 and 0.5.1 dated 2026-09-08
DESCRIPTION | 6 ++-- MD5 | 30 +++++++++++------------ NEWS.md | 6 ++++ R/api.R | 5 +-- R/array.R | 53 ++++++++++++++++++++++++++++++---------- R/chunking.R | 36 ++++++++++++++++++++++++++- R/chunking_regular.R | 56 +++++++++++++++++++++++++++---------------- R/store_s3.R | 3 +- R/utils.R | 7 +++-- R/zzz.R | 1 README.md | 4 +-- man/chunk_grid_regular.Rd | 22 ++++++++++++++++ man/create_zarr.Rd | 5 +-- man/s3_list_dir.Rd | 3 +- man/zarr_array.Rd | 29 ++++++++++++++++++++-- tests/testthat/test-resize.R | 4 +++ 16 files changed, 201 insertions(+), 69 deletions(-)
Title: Reproducible Data Capsules with Provenance and Fallback
Description: Tools for building brick-proof, reproducible, self-contained
data capsules.
Resolves open-data sources through the Comprehensive Knowledge
Archive Network ('CKAN', <https://ckan.org/>) package_show and
package_search endpoints, records and verifies provenance with
Secure Hash Algorithm 256 ('SHA-256') digests and Internet Archive
'Wayback Machine' (<https://web.archive.org/>) snapshots, validates
downloaded data against a pinned schema, and falls back to
schema-driven synthetic data when the real source is unreachable.
Run records are captured in a manifest plus a plain-language summary
so any result can be traced back to its inputs. Also ships a small
compiled C core (fast summary statistics and a self-contained
'SHA-256') that sibling packages in the 'rmorie' ecosystem reach
through 'LinkingTo' for a single, shared numeric and
provenance-hashing backend.
Author: Vansh Singh Ruhela [aut, cre]
Maintainer: Vansh Singh Ruhela <vsruhela@proton.me>
Diff between rmoriebricklayer versions 0.3.7 dated 2026-08-05 and 0.3.9 dated 2026-09-08
DESCRIPTION | 11 +++++---- MD5 | 41 +++++++++++++++++++++--------------- NAMESPACE | 2 + NEWS.md | 33 ++++++++++++++++++++++++++++ R/agent_bundle.R | 26 +++++++++++++++------- R/json_native.R |only R/lib_data_loader.R | 14 ++++++------ R/lib_helpers.R | 25 +++++++++++++++++++++ R/lib_manifest.R | 10 +++++--- R/sha256_native.R |only README.md | 9 +++++++ inst/CITATION | 1 inst/doc/capsules.html | 2 - inst/scripts/setup_and_run.R | 15 ++++--------- man/agent_bundle.Rd | 18 +++++++++++---- man/bricklayer_json_from_json.Rd |only man/bricklayer_json_to_json.Rd |only man/write_manifest_json.Rd | 6 ++--- tests/testthat/test-agent-bundle.R |only tests/testthat/test-capsule.R | 12 ++++------ tests/testthat/test-data-loader.R | 31 +++++++++++---------------- tests/testthat/test-fetch-native.R | 20 +++++++++++++++++ tests/testthat/test-json-branches.R |only tests/testthat/test-json-native.R |only tests/testthat/test-json-parity.R |only tests/testthat/test-sha256-native.R |only 26 files changed, 191 insertions(+), 85 deletions(-)
More information about rmoriebricklayer at CRAN
Permanent link
Title: NHS and Healthcare-Related Data for Education and Training
Description: Free United Kingdom National Health Service (NHS) and other healthcare, or population health-related data for education and training purposes. This package contains synthetic data based on real healthcare datasets, or cuts of open-licenced official data. This package exists to support skills development in the NHS-R community: <https://nhsrcommunity.com/>.
Author: Zoe Turner [aut, cre] ,
Chris Mainey [aut] ,
Tom Jemmett [aut] ,
Fran Barton [aut] ,
Gary Hutson [aut] ,
NHS-R community [cph]
Maintainer: Zoe Turner <zoe.turner3@nhs.net>
Diff between NHSRdatasets versions 0.3.0 dated 2021-03-13 and 1.0.0 dated 2026-09-08
NHSRdatasets-0.3.0/NHSRdatasets/man/figures |only NHSRdatasets-1.0.0/NHSRdatasets/DESCRIPTION | 38 NHSRdatasets-1.0.0/NHSRdatasets/MD5 | 112 NHSRdatasets-1.0.0/NHSRdatasets/NEWS.md | 82 NHSRdatasets-1.0.0/NHSRdatasets/R/LOS_model.R | 67 NHSRdatasets-1.0.0/NHSRdatasets/R/ae_attendances.R | 156 - NHSRdatasets-1.0.0/NHSRdatasets/R/apha_cpd_survey.R |only NHSRdatasets-1.0.0/NHSRdatasets/R/covid19.R |only NHSRdatasets-1.0.0/NHSRdatasets/R/ons_mortality.R | 89 NHSRdatasets-1.0.0/NHSRdatasets/R/ons_uk_population_2023.R |only NHSRdatasets-1.0.0/NHSRdatasets/R/stranded_patient_model.R | 74 NHSRdatasets-1.0.0/NHSRdatasets/R/synthetic_news_data.R | 75 NHSRdatasets-1.0.0/NHSRdatasets/README.md | 286 +- NHSRdatasets-1.0.0/NHSRdatasets/build/vignette.rds |binary NHSRdatasets-1.0.0/NHSRdatasets/data/apha_cpd_survey.rda |only NHSRdatasets-1.0.0/NHSRdatasets/data/covid19.rda |only NHSRdatasets-1.0.0/NHSRdatasets/data/ons_uk_population_2023.rda |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/LOS_model.R | 53 NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/LOS_model.Rmd | 514 ++-- NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/LOS_model.html | 1167 ++++++---- NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/NHSRdatasets.R |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/NHSRdatasets.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/NHSRdatasets.html |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/ae_attendances.R | 248 +- NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/ae_attendances.Rmd | 515 ++-- NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/ae_attendances.html | 869 ++++--- NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/apha_cpd_survey.R |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/apha_cpd_survey.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/apha_cpd_survey.html |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/contributing.R |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/contributing.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/contributing.html |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/covid19.R |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/covid19.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/covid19.html |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/create_apha_cpd_survey.R |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/create_apha_cpd_survey.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/create_apha_cpd_survey.html |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/create_ons_mortality.R |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/create_ons_mortality.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/create_ons_mortality.html |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/create_ons_uk_population_2023.R |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/create_ons_uk_population_2023.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/create_ons_uk_population_2023.html |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/ons_mortality.R | 421 --- NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/ons_mortality.Rmd | 639 ----- NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/ons_mortality.html | 953 +++----- NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/ons_uk_population_2023.R |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/ons_uk_population_2023.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/ons_uk_population_2023.html |only NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/stranded_model.R | 62 NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/stranded_model.Rmd | 286 +- NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/stranded_model.html | 634 +++-- NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/synthetic_news_data.R | 93 NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/synthetic_news_data.Rmd | 266 +- NHSRdatasets-1.0.0/NHSRdatasets/inst/doc/synthetic_news_data.html | 634 +++-- NHSRdatasets-1.0.0/NHSRdatasets/inst/hex_logo.R |only NHSRdatasets-1.0.0/NHSRdatasets/inst/images |only NHSRdatasets-1.0.0/NHSRdatasets/man/LOS_model.Rd | 80 NHSRdatasets-1.0.0/NHSRdatasets/man/ae_attendances.Rd | 171 - NHSRdatasets-1.0.0/NHSRdatasets/man/apha_cpd_survey.Rd |only NHSRdatasets-1.0.0/NHSRdatasets/man/covid19.Rd |only NHSRdatasets-1.0.0/NHSRdatasets/man/ons_mortality.Rd | 109 NHSRdatasets-1.0.0/NHSRdatasets/man/ons_uk_population_2023.Rd |only NHSRdatasets-1.0.0/NHSRdatasets/man/stranded_data.Rd | 84 NHSRdatasets-1.0.0/NHSRdatasets/man/synthetic_news_data.Rd | 87 NHSRdatasets-1.0.0/NHSRdatasets/vignettes/LOS_model.Rmd | 514 ++-- NHSRdatasets-1.0.0/NHSRdatasets/vignettes/NHSRdatasets.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/vignettes/ae_attendances.Rmd | 515 ++-- NHSRdatasets-1.0.0/NHSRdatasets/vignettes/apha_cpd_survey.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/vignettes/contributing.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/vignettes/covid19.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/vignettes/create_apha_cpd_survey.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/vignettes/create_ons_mortality.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/vignettes/create_ons_uk_population_2023.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/vignettes/ons_mortality.Rmd | 639 ----- NHSRdatasets-1.0.0/NHSRdatasets/vignettes/ons_uk_population_2023.Rmd |only NHSRdatasets-1.0.0/NHSRdatasets/vignettes/stranded_model.Rmd | 286 +- NHSRdatasets-1.0.0/NHSRdatasets/vignettes/synthetic_news_data.Rmd | 266 +- 79 files changed, 5749 insertions(+), 5335 deletions(-)
Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Ross Bennett [ctb],
Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between xts versions 0.14.2 dated 2026-02-28 and 0.14.3 dated 2026-09-08
DESCRIPTION | 6 +-- MD5 | 37 +++++++++++----------- NEWS.md | 12 ++++++- R/axTicksByTime.R | 2 - R/list.R | 2 - R/na.R | 4 +- R/parse8601.R | 47 ++++++++++++++++++++++++++++ R/xts.methods.R | 60 +++--------------------------------- build/vignette.rds |binary inst/doc/xts-faq.R | 2 - inst/doc/xts-faq.pdf |binary inst/doc/xts.R | 2 - inst/doc/xts.pdf |binary inst/tinytest/test-merge.R | 4 +- inst/tinytest/test-parseTimeOfDay.R |only inst/tinytest/test-tclass.R | 4 +- inst/tinytest/test-tformat.R | 2 - inst/tinytest/test-tzone.R | 2 - inst/tinytest/test-xts.methods.R | 2 - inst/tinytest/test-zoo.R | 16 --------- 20 files changed, 96 insertions(+), 108 deletions(-)
Title: More Flexible Form of Boolean Verbose
Description: R functions are not supposed to print text without giving
the user the option to turn the printing off or on using a Boolean
'verbose' in a construct like 'if(verbose) print(...)'. But this black/white
approach is rather rigid, and an approach with shades of gray might be more
appropriate in many circumstances. As of Version 1.4, also supports text
and background colors, as well as text styles.
Author: Barry Zeeberg [aut, cre]
Maintainer: Barry Zeeberg <barryz2013@gmail.com>
Diff between vprint versions 1.3 dated 2026-07-23 and 1.4 dated 2026-09-08
DESCRIPTION | 14 +++++++------ MD5 | 17 ++++++++-------- NAMESPACE | 1 R/vprint.R | 52 ++++++++++++++++++++++++++++++--------------------- build/vignette.rds |binary inst/doc/vprint.Rmd | 11 ++++++++-- inst/doc/vprint.html | 16 +++++++++------ man/vprint.Rd | 13 +++++++++--- vignettes/colors.jpg |only vignettes/vprint.Rmd | 11 ++++++++-- 10 files changed, 87 insertions(+), 48 deletions(-)
Title: A Framework for Data-Driven Stochastic Disease Spread
Simulations
Description: Provides an efficient and very flexible framework to
conduct data-driven epidemiological modeling in realistic large
scale disease spread simulations. The framework integrates
infection dynamics in subpopulations as continuous-time Markov
chains using the Gillespie stochastic simulation algorithm and
incorporates available data such as births, deaths and movements
as scheduled events at predefined time-points. Using C code for
the numerical solvers and 'OpenMP' (if available) to divide work
over multiple processors ensures high performance when simulating
a sample outcome. One of our design goals was to make the package
extendable and enable usage of the numerical solvers from other R
extension packages in order to facilitate complex epidemiological
research. The package contains template models and can be extended
with user-defined models. For more details see the paper by
Widgren, Bauer, Eriksson and Engblom (2019)
<doi:10.18637/jss.v091.i12>. The package also provides
function [...truncated...]
Author: Stefan Widgren [aut, cre] ,
Robin Eriksson [aut] ,
Stefan Engblom [aut] ,
Pavol Bauer [aut] ,
Thomas Rosendal [ctb] ,
Ivana Rodriguez Ewerloef [ctb] ,
Attractive Chaos [cph]
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between SimInf versions 10.1.0 dated 2025-11-17 and 11.1.0 dated 2026-09-08
SimInf-10.1.0/SimInf/man/events_SISe.Rd |only SimInf-10.1.0/SimInf/man/trajectory-SimInf_pmcmc-method.Rd |only SimInf-10.1.0/SimInf/man/u0_SISe.Rd |only SimInf-11.1.0/SimInf/DESCRIPTION | 10 SimInf-11.1.0/SimInf/MD5 | 374 ++--- SimInf-11.1.0/SimInf/NAMESPACE | 110 - SimInf-11.1.0/SimInf/NEWS.md | 71 + SimInf-11.1.0/SimInf/R/C-generator.R | 106 + SimInf-11.1.0/SimInf/R/SEIR.R | 276 ++-- SimInf-11.1.0/SimInf/R/SIR.R | 272 ++- SimInf-11.1.0/SimInf/R/SIS.R | 274 ++-- SimInf-11.1.0/SimInf/R/SISe.R | 205 -- SimInf-11.1.0/SimInf/R/SISe3.R | 322 ++-- SimInf-11.1.0/SimInf/R/SISe3_sp.R | 117 - SimInf-11.1.0/SimInf/R/SISe_sp.R | 85 - SimInf-11.1.0/SimInf/R/SimInf.R | 178 +- SimInf-11.1.0/SimInf/R/SimInf_events.R | 448 +++++- SimInf-11.1.0/SimInf/R/SimInf_individual_events.R | 358 ++++- SimInf-11.1.0/SimInf/R/SimInf_model.R | 210 ++- SimInf-11.1.0/SimInf/R/abc.R | 143 +- SimInf-11.1.0/SimInf/R/check_arguments.R | 59 SimInf-11.1.0/SimInf/R/classes.R | 282 ++-- SimInf-11.1.0/SimInf/R/degree.R | 108 + SimInf-11.1.0/SimInf/R/distance.R | 163 +- SimInf-11.1.0/SimInf/R/edge_properties.R | 112 - SimInf-11.1.0/SimInf/R/init.R | 20 SimInf-11.1.0/SimInf/R/lambert.R | 14 SimInf-11.1.0/SimInf/R/mparse.R | 251 ++- SimInf-11.1.0/SimInf/R/n.R | 119 + SimInf-11.1.0/SimInf/R/openmp.R | 54 SimInf-11.1.0/SimInf/R/package_skeleton.R | 66 SimInf-11.1.0/SimInf/R/pfilter.R | 92 + SimInf-11.1.0/SimInf/R/plot.R | 245 +-- SimInf-11.1.0/SimInf/R/pmcmc.R | 185 +- SimInf-11.1.0/SimInf/R/prevalence.R | 126 + SimInf-11.1.0/SimInf/R/print.R | 105 + SimInf-11.1.0/SimInf/R/punchcard.R | 215 +-- SimInf-11.1.0/SimInf/R/run.R | 138 +- SimInf-11.1.0/SimInf/R/trajectory.R | 49 SimInf-11.1.0/SimInf/R/u0.R | 261 +-- SimInf-11.1.0/SimInf/R/v0.R | 94 - SimInf-11.1.0/SimInf/R/valid.R | 22 SimInf-11.1.0/SimInf/build/partial.rdb |binary SimInf-11.1.0/SimInf/build/vignette.rds |binary SimInf-11.1.0/SimInf/inst/doc/SimInf.R | 12 SimInf-11.1.0/SimInf/inst/doc/SimInf.Rnw | 35 SimInf-11.1.0/SimInf/inst/doc/SimInf.pdf |binary SimInf-11.1.0/SimInf/inst/doc/mparse.R |only SimInf-11.1.0/SimInf/inst/doc/mparse.Rmd |only SimInf-11.1.0/SimInf/inst/doc/mparse.html |only SimInf-11.1.0/SimInf/inst/doc/post-process-data.R | 19 SimInf-11.1.0/SimInf/inst/doc/post-process-data.Rmd | 174 +- SimInf-11.1.0/SimInf/inst/doc/post-process-data.html | 262 ++- SimInf-11.1.0/SimInf/inst/doc/scheduled-events.R | 344 ++++- SimInf-11.1.0/SimInf/inst/doc/scheduled-events.Rmd | 594 +++++++- SimInf-11.1.0/SimInf/inst/doc/scheduled-events.html | 685 ++++++++-- SimInf-11.1.0/SimInf/inst/include/SimInf.h | 11 SimInf-11.1.0/SimInf/man/C_code.Rd | 33 SimInf-11.1.0/SimInf/man/SEIR-class.Rd | 36 SimInf-11.1.0/SimInf/man/SEIR.Rd | 113 - 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SimInf-11.1.0/SimInf/man/u0_SIS.Rd | 81 - SimInf-11.1.0/SimInf/man/u0_SISe3.Rd | 118 + SimInf-11.1.0/SimInf/man/u0_from_individual_events.Rd |only SimInf-11.1.0/SimInf/man/v0-set.Rd | 89 - SimInf-11.1.0/SimInf/src/SimInf.c | 197 ++ SimInf-11.1.0/SimInf/src/SimInf_internal.h | 25 SimInf-11.1.0/SimInf/src/misc/SimInf_trajectory.c | 626 ++++++--- SimInf-11.1.0/SimInf/src/models/SEIR.c | 8 SimInf-11.1.0/SimInf/src/models/SIR.c | 8 SimInf-11.1.0/SimInf/src/models/SIS.c | 8 SimInf-11.1.0/SimInf/src/models/SISe.c | 8 SimInf-11.1.0/SimInf/src/models/SISe3.c | 8 SimInf-11.1.0/SimInf/src/models/SISe3_sp.c | 8 SimInf-11.1.0/SimInf/src/models/SISe_sp.c | 8 SimInf-11.1.0/SimInf/src/solvers/SimInf_solver.c | 41 SimInf-11.1.0/SimInf/src/solvers/SimInf_solver_aem.c | 98 - SimInf-11.1.0/SimInf/src/solvers/SimInf_solver_mssm.c | 143 +- SimInf-11.1.0/SimInf/src/solvers/SimInf_solver_mssm_crn.c |only SimInf-11.1.0/SimInf/src/solvers/SimInf_solver_ssm.c | 124 + SimInf-11.1.0/SimInf/tests/SEIR.R | 33 SimInf-11.1.0/SimInf/tests/SIR.R | 76 - SimInf-11.1.0/SimInf/tests/SIS.R | 12 SimInf-11.1.0/SimInf/tests/SISe.R | 16 SimInf-11.1.0/SimInf/tests/SISe3.R | 24 SimInf-11.1.0/SimInf/tests/SISe3_sp.R | 24 SimInf-11.1.0/SimInf/tests/SISe_sp.R | 14 SimInf-11.1.0/SimInf/tests/SimInf.R | 18 SimInf-11.1.0/SimInf/tests/SimInf_events.R | 68 SimInf-11.1.0/SimInf/tests/SimInf_model.R | 13 SimInf-11.1.0/SimInf/tests/abc-ldata.R | 6 SimInf-11.1.0/SimInf/tests/individual_events.R | 101 + SimInf-11.1.0/SimInf/tests/ldata_sp.R | 8 SimInf-11.1.0/SimInf/tests/match_compartments.R | 50 SimInf-11.1.0/SimInf/tests/mparse.R | 55 SimInf-11.1.0/SimInf/tests/pfilter.R | 24 SimInf-11.1.0/SimInf/tests/punchcard.R | 90 + SimInf-11.1.0/SimInf/tests/sample_select.R | 20 SimInf-11.1.0/SimInf/tests/solver_aem.R | 16 SimInf-11.1.0/SimInf/tests/v0.R | 17 SimInf-11.1.0/SimInf/vignettes/SimInf.Rnw | 35 SimInf-11.1.0/SimInf/vignettes/SimInf.bib | 4 SimInf-11.1.0/SimInf/vignettes/mparse.Rmd |only SimInf-11.1.0/SimInf/vignettes/post-process-data.Rmd | 174 +- SimInf-11.1.0/SimInf/vignettes/scheduled-events.Rmd | 594 +++++++- 195 files changed, 11932 insertions(+), 5322 deletions(-)
Title: Relational Query Generator for Data Manipulation at Scale
Description: A piped query generator based on Edgar F. Codd's relational
algebra, and on production experience using 'SQL' and 'dplyr' at big data
scale. The design represents an attempt to make 'SQL' more teachable by
denoting composition by a sequential pipeline notation instead of nested
queries or functions. The implementation delivers reliable high
performance data processing on large data systems such as 'Spark',
databases, and 'data.table'. Package features include: data processing trees
or pipelines as observable objects (able to report both columns
produced and columns used), optimized 'SQL' generation as an explicit
user visible table modeling step, plus explicit query reasoning and checking.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rquery versions 1.4.99 dated 2023-08-19 and 1.5.1 dated 2026-09-08
DESCRIPTION | 10 - MD5 | 44 +++--- NAMESPACE | 26 ++-- NEWS.md | 6 R/sql_node.R | 2 R/wrap_ex.R | 2 README.md | 28 ++-- build/vignette.rds |binary inst/doc/AssigmentPartitioner.html | 234 ++++++++++++++++++------------------- inst/doc/Parameterized_rquery.R | 2 inst/doc/Parameterized_rquery.html | 5 inst/doc/PipeableSQL.R | 4 inst/doc/PipeableSQL.html | 8 - inst/doc/QueryGeneration.html | 5 inst/doc/R_mapping.R | 12 - inst/doc/R_mapping.html | 15 +- inst/doc/rquery_intro.R | 2 inst/doc/rquery_intro.html | 9 - inst/doc/rquery_many_columns.html | 5 inst/doc/sql_quoting.html | 5 man/ex.Rd | 2 man/rquery-package.Rd | 5 man/sql_node.Rd | 2 23 files changed, 235 insertions(+), 198 deletions(-)
Title: Read/Write Files in Key-Value-Hierarchy Format
Description: The format KVH is a lightweight format that can be read/written both by humans and machines.
It can be useful in situations where XML or alike formats seem to be an overkill.
We provide an ability to parse KVH files in R pretty fast due to 'Rcpp' use.
Author: Serguei Sokol [aut, cre]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between kvh versions 1.4.2 dated 2022-01-26 and 1.5.0 dated 2026-09-08
DESCRIPTION | 18 +++++++----- MD5 | 21 +++++++-------- NEWS | 61 +++++++++++++++++++------------------------ R/RcppExports.R | 10 +++++-- R/kvh.R | 20 +++++++++----- inst/include/kvh.h | 4 +- man/kvh_read.Rd | 10 +++++-- man/obj2kvh.Rd | 2 - src/RcppExports.cpp | 9 +++--- src/rcpp_kvh.cpp | 64 ++++++++++++++++++++++++++++++++++++++-------- tests/testthat/res.RData |only tests/testthat/test_kvh.R | 27 +++++++++++++------ 12 files changed, 157 insertions(+), 89 deletions(-)
Title: Composite-Based Structural Equation Modeling
Description: Estimate, assess, test, and study linear, nonlinear, hierarchical
and multigroup structural equation models using composite-based approaches
and procedures, including estimation techniques such as partial least squares
path modeling (PLS-PM) and its derivatives (PLSc, ordPLSc, robustPLSc),
generalized structured component analysis (GSCA), generalized structured
component analysis with uniqueness terms (GSCAm), generalized canonical
correlation analysis (GCCA), principal component analysis (PCA),
factor score regression (FSR) using sum score, regression or
Bartlett scores (including bias correction using Croon’s approach),
as well as several tests and typical postestimation procedures
(e.g., verify admissibility of the estimates, assess the model fit,
test the model fit etc.).
Author: Manuel E. Rademaker [aut] ,
Florian Schuberth [aut, cre] ,
Tamara Schamberger [ctb] ,
Michael Klesel [ctb] ,
Huu Phuc Nguyen [ctb] ,
Theo K. Dijkstra [ctb],
Joerg Henseler [ctb] ,
Gloria Pietropolli [ctb] ,
Kjell S. Slupphaug [ctb] ,
Jason J. Berger [ [...truncated...]
Maintainer: Florian Schuberth <f.schuberth@utwente.nl>
Diff between cSEM versions 0.6.1 dated 2025-05-16 and 0.7.1 dated 2026-09-08
DESCRIPTION | 43 +- MD5 | 151 ++++--- NAMESPACE | 8 R/00_csem.R | 2 R/csem_data.R | 9 R/csem_fit.R | 4 R/csem_resample.R | 23 - R/estimators_paths.R | 4 R/helper_assess.R | 360 +++++++++++++++---- R/helper_csem.R | 4 R/helper_doModelSearch.R |only R/helper_estimators_paths.R | 22 - R/helper_foreman.R | 59 +-- R/helper_infer.R | 9 R/helper_matrix.R |only R/helper_polycor.R |only R/helper_test_MGD.R | 23 + R/plot.cSEMNonlinearEffects.R | 15 R/postestimate_assess.R | 30 - R/postestimate_doModelSearch.R |only R/postestimate_doRedundancyAnalysis.R | 2 R/postestimate_predict.R | 10 R/postestimate_test_MGD.R | 89 ++-- R/postestimate_test_MICOM.R | 37 + R/postestimate_test_OMF.R | 13 R/postestimate_verify.R | 10 R/print.cSEMAssess.R | 42 +- R/print.cSEMModelSearch.R |only R/zz_arguments.R | 41 +- R/zz_datasets.R | 96 ++++- README.md | 303 +++++++++------ build/partial.rdb |binary build/stage23.rdb |binary build/vignette.rds |binary data/LeDang2022.RData |only data/corp_rep_data.rda |only inst/REFERENCES.bib | 173 ++++++--- inst/doc/Notation.html | 2 inst/doc/Terminology.html | 4 inst/doc/Using-assess.Rmd | 2 inst/doc/Using-assess.html | 103 ++--- inst/doc/cSEM.Rmd | 2 inst/doc/cSEM.html | 111 ++--- inst/examples/example_doModelSearch.R |only inst/examples/example_predict.R | 4 inst/examples/example_resampleData.R | 2 inst/examples/example_resamplecSEMResults.R | 2 inst/examples/example_testMICOM.R | 2 man/BergamiBagozzi2000.Rd | 8 man/LeDang2022.Rd |only man/args_assess_dotdotdot.Rd | 5 man/cSEM-package.Rd | 4 man/calculateCorVCV.Rd |only man/calculateFitness.Rd |only man/calculateHTMT.Rd | 28 - man/calculateHTMTasymptoticSE.Rd |only man/calculateIndicatorCor.Rd | 4 man/checkCycles.Rd |only man/checkIsolatedConstruct.Rd |only man/corp_rep_data.Rd |only man/csem.Rd | 2 man/csem_arguments.Rd | 26 + man/dbinorm.Rd |only man/doModelSearch.Rd |only man/doRedundancyAnalysis.Rd | 2 man/dropNAResamples.Rd |only man/fastIntTab.Rd |only man/isPositiveSemiDefinite.Rd |only man/mutateVector.Rd |only man/polychor.Rd |only man/polyserial.Rd |only man/predict.Rd | 2 man/print.cSEMModelSearch.Rd |only man/processData.Rd | 4 man/resampleData.Rd | 2 man/resamplecSEMResults.Rd | 2 man/snlminb.Rd |only man/testCVPAT.Rd | 2 man/testMGD.Rd | 37 + man/testMICOM.Rd | 2 man/trace.Rd |only tests/other_tests/test_nlin_second_order_issue_624.R |only tests/other_tests/test_polychor_performance.R |only tests/testthat/test-assess.R | 85 ++-- tests/testthat/test-csem.r | 140 ++++++- tests/testthat/test-helper_assess.R |only tests/testthat/test-main.R | 15 tests/testthat/test-testMGD.R | 93 ++++ tests/testthat/test-testMICOM.R | 59 +++ vignettes/Using-assess.Rmd | 2 vignettes/cSEM.Rmd | 2 91 files changed, 1606 insertions(+), 736 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/> to get started.
Author: Robert J. Hijmans [cre, aut] ,
Andrew Brown [aut] ,
A. Marcia Barbosa [aut] ,
Emanuele Cordano [aut] ,
Krzysztof Dyba [aut] ,
Roger Bivand [ctb] ,
Michael Chirico [ctb] ,
Edzer Pebesma [ctb] ,
Barry Rowlingson [ctb] ,
Michael D. Sumner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.9-46 dated 2026-08-22 and 1.9-50 dated 2026-09-08
DESCRIPTION | 10 +- MD5 | 87 +++++++++---------- NAMESPACE | 2 NEWS.md | 28 +++++- R/RcppExports.R | 4 R/animate.R | 11 ++ R/gdal.R | 4 R/generics.R | 65 +++++++------- configure | 52 ++++++++++- configure.ac | 49 +++++++++- inst/tinytest/test_cats.R | 26 +++-- man/RGB.Rd | 2 man/centroids.Rd | 4 man/crop.Rd | 4 man/dimensions.Rd | 4 man/extract.Rd | 4 man/focal3D.Rd | 2 man/focalCpp.Rd | 2 man/gdal.Rd | 4 man/plotRGB.Rd | 2 man/project.Rd | 13 +- man/same.crs.Rd | 2 man/subst.Rd | 2 man/terra-package.Rd | 4 man/terraOptions.Rd | 6 - man/union.Rd | 5 - man/writeRaster.Rd | 2 src/RcppExports.cpp | 11 ++ src/RcppFunctions.cpp | 25 +++++ src/RcppModule.cpp | 6 - src/catchments.cpp | 73 ++++++++++++---- src/crs.cpp | 64 ++++++++++---- src/gdal_algs.cpp | 190 +++++++++++++++++++++++++----------------- src/gdal_compat.h |only src/gdal_multidimensional.cpp | 133 +++++++++++++++++++++-------- src/gdalio.cpp | 20 ++++ src/gdalio.h | 2 src/geos_methods.cpp | 32 ++++--- src/geos_spat.h | 2 src/read_gdal.cpp | 64 +++++++++++--- src/spatRaster.h | 11 +- src/spatSources.cpp | 1 src/spatVector.h | 4 src/tessellate.cpp | 3 src/write_gdal.cpp | 1 45 files changed, 730 insertions(+), 312 deletions(-)
Title: Additional Documentation and Regression Tests for
'stats::free1way()'
Description: Function 'stats::free1way()' implements semiparametrically
efficient population- and permutation-based inference in
distribution-free stratified K-sample oneway layouts. This package
provides additional documentation, including a detailed description
of the implementation, and serves as a home for extensive regression tests.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Frank E Harrell Jr [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between free1way.docreg versions 1.0-2 dated 2026-06-30 and 1.0-3 dated 2026-09-08
DESCRIPTION | 8 +++---- MD5 | 16 +++++++------- inst/NEWS.Rd | 9 ++++++++ inst/doc/free1way.R | 45 ------------------------------------------ inst/doc/free1way.Rnw | 47 +++----------------------------------------- inst/doc/free1way.pdf |binary inst/nuweb/free1way.w | 47 +++----------------------------------------- tests/free1way-Ex.Rout.save | 43 ++++++++++++++++++++++++---------------- vignettes/free1way.Rnw | 47 +++----------------------------------------- 9 files changed, 60 insertions(+), 202 deletions(-)
More information about free1way.docreg at CRAN
Permanent link
Title: Quantile Regression Coefficients Modeling
Description: Parametric modeling of quantile regression coefficient functions.
Author: Paolo Frumento [aut, cre]
Maintainer: Paolo Frumento <paolo.frumento@unipi.it>
Diff between qrcm versions 3.3 dated 2026-06-22 and 3.4 dated 2026-09-08
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 6 +++--- R/iqrL1_fit.R | 22 ++++++++++++---------- man/qrcm-package.Rd | 4 ++-- 5 files changed, 25 insertions(+), 23 deletions(-)
More information about PseudoVoigtMixt at CRAN
Permanent link
Title: Publication-Quality Diagrams for Latent Variable Models
Description: Converts output from latent variable model tools into
publication-ready path diagrams and model schematics. 'lavaan' fit objects
and parameter tables are supported as a primary workflow, with graph
adapters for objects from 'blavaan', 'lavaan.mi', 'semPlot', 'mirt',
'eRm', 'OpenMx', 'psych', 'poLCA', 'mclust', 'flexmix', 'lcmm',
'tidyLPA', and 'MplusAutomation' workflows when those packages are
available. Supports structural equation and confirmatory factor analysis
diagrams, multilevel structural equation models, growth models,
higher-order factor models, latent class and profile models, item response
theory models, and common mixture outputs through a unified graph grammar
with model-aware defaults, geometry diagnostics, layout quality scoring,
automatic layout selection, customizable publication styles, 'RStudio'
preview, SVG/PDF/PNG export, 'TikZ' output, and reproducible publication
bundles. A local 'Shiny' editor supports mouse dragging of nodes and
coefficient labels, synchroniz [...truncated...]
Author: Feng Ji [aut, cre]
Maintainer: Feng Ji <f.ji@utoronto.ca>
Diff between lvmPlot versions 0.1.0 dated 2026-06-30 and 0.1.1 dated 2026-09-08
lvmPlot-0.1.0/lvmPlot/tests/testthat/Rplots.pdf |only lvmPlot-0.1.1/lvmPlot/DESCRIPTION | 19 lvmPlot-0.1.1/lvmPlot/MD5 | 66 lvmPlot-0.1.1/lvmPlot/NEWS.md | 41 lvmPlot-0.1.1/lvmPlot/R/customize.R | 12 lvmPlot-0.1.1/lvmPlot/R/editor-exports.R |only lvmPlot-0.1.1/lvmPlot/R/editor-state.R |only lvmPlot-0.1.1/lvmPlot/R/editor.R | 807 +++++------ lvmPlot-0.1.1/lvmPlot/R/export.R | 5 lvmPlot-0.1.1/lvmPlot/R/graph.R | 13 lvmPlot-0.1.1/lvmPlot/R/lvm-adapters.R | 3 lvmPlot-0.1.1/lvmPlot/R/lvm-graph.R | 29 lvmPlot-0.1.1/lvmPlot/R/lvm-options.R | 12 lvmPlot-0.1.1/lvmPlot/R/plot.R | 60 lvmPlot-0.1.1/lvmPlot/R/routing.R | 146 + lvmPlot-0.1.1/lvmPlot/R/tikz.R | 1 lvmPlot-0.1.1/lvmPlot/R/utils.R | 25 lvmPlot-0.1.1/lvmPlot/README.md | 124 + lvmPlot-0.1.1/lvmPlot/build |only lvmPlot-0.1.1/lvmPlot/inst/CITATION | 10 lvmPlot-0.1.1/lvmPlot/inst/doc |only lvmPlot-0.1.1/lvmPlot/inst/examples/tutorial-workflow.R |only lvmPlot-0.1.1/lvmPlot/man/lvmPlot.Rd | 14 lvmPlot-0.1.1/lvmPlot/man/lvmPlot_editor.Rd | 41 lvmPlot-0.1.1/lvmPlot/tests/testthat/test-editor-transfers.R |only lvmPlot-0.1.1/lvmPlot/tests/testthat/test-geometry-cache.R |only lvmPlot-0.1.1/lvmPlot/tests/testthat/test-lvm.R | 506 ------ lvmPlot-0.1.1/lvmPlot/tests/testthat/test-lvmPlot.R | 3 lvmPlot-0.1.1/lvmPlot/tests/testthat/test-model-adapters.R |only lvmPlot-0.1.1/lvmPlot/tests/testthat/test-robustness.R |only lvmPlot-0.1.1/lvmPlot/vignettes |only 31 files changed, 893 insertions(+), 1044 deletions(-)
Title: Kronecker-Invariant Tests for High-Dimensional Separability
Testing
Description: Kronecker-invariant tests for high-dimensional separability testing of matrix-variate data, focusing on Gaussian populations as benchmark cases. Tests whether the population covariance matrix is represented as a Kronecker product of row and column covariance matrices. Implements the tests based on the eigenvalues of the sample core whose test statistics are invariant to the separable component of the population covariance matrix, referred to as Kronecker-invariance. Tests constructed using the largest eigenvalue and the separable expansion of the sample core and applying the extended likelihood ratio test for sphericity testing to the sample core. For details, see Sung and Hoff (2025) <doi:10.48550/arXiv.2506.17463>.
Author: Bongjung Sung [aut, cre]
Maintainer: Bongjung Sung <bongjung.sung@epfl.ch>
Diff between kro.inv.test versions 0.1.2 dated 2026-07-30 and 0.1.3 dated 2026-09-08
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Mapas De Las Divisiones Politicas y Administrativas De Chile
(Maps of the Political and Administrative Divisions of Chile)
Description: Mapas terrestres con topologias simplificadas. Estos mapas no
tienen precision geodesica, por lo que aplica el DFL-83 de 1979 de la Republica
de Chile y se consideran referenciales sin validez legal.
No se incluyen los territorios antarticos y bajo ningun evento estos mapas
significan que exista una cesion u ocupacion de territorios soberanos en
contra del Derecho Internacional por parte de Chile. Esta paquete esta
documentado intencionalmente en castellano asciificado para que funcione sin
problema en diferentes plataformas.
(Terrestrial maps with simplified toplogies. These maps lack geodesic
precision, therefore DFL-83 1979 of the Republic of Chile applies and are
considered to have no legal validity.
Antartic territories are excluded and under no event these maps mean
there is a cession or occupation of sovereign territories against International
Laws from Chile. This package was intentionally documented in asciified
spanish to make it work without problem on different platforms.)
Author: Mauricio Vargas [aut, cre],
Roberto Salas [ctb],
Joshua Kunst [ctb],
Juan Correa [dtc],
Ricardo Aravena [ths],
Pontificia Universidad Catolica de Chile [cph],
Instituto Nacional de Estadisticas [dtc],
Subsecretaria de Desarrollo Regional [dtc],
Bib [...truncated...]
Maintainer: Mauricio Vargas <m.vargas.sepulveda@gmail.com>
This is a re-admission after prior archival of version 0.4.0 dated 2025-12-09
Diff between chilemapas versions 0.4.0 dated 2025-12-09 and 0.4.1 dated 2026-09-08
DESCRIPTION | 16 ++++++++-------- MD5 | 19 ++++++++++--------- NAMESPACE | 5 +---- NEWS.md | 6 +++--- R/administrative-maps.R | 28 ++++++++++------------------ R/political-maps.R | 16 ++++++++-------- build/vignette.rds |binary inst/WORDLIST |only inst/doc/chilemapas.Rmd | 1 + inst/doc/chilemapas.html | 14 +++++++------- vignettes/chilemapas.Rmd | 1 + 11 files changed, 49 insertions(+), 57 deletions(-)
More information about actiwalkability at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-03 1.9
2020-08-25 1.8
2020-07-20 1.7
2020-07-01 1.6
Title: Metabolomics and Spectral Data Analysis and Mining
Description: Provides methods for metabolomics and spectral data analysis,
including data import, preprocessing, visualization, univariate and
multivariate analysis, machine learning, feature selection, and pathway
analysis. The package supports analytical workflows for different data
types used in metabolomics and spectroscopy. Some optional functionality
uses the suggested packages 'cyjShiny' and 'specmine.datasets'. The package
'specmine.datasets' is maintained separately at
<https://github.com/PedroFontao/specmine.datasets>.
Author: Christopher Costa [aut],
Marcelo Maraschin [aut],
Miguel Rocha [aut],
Sara Cardoso [aut],
Telma Afonso [aut],
Bruno Pereira [aut],
Pedro Fontao [aut, cre],
C. Beleites [cph],
Jie Hao [cph]
Maintainer: Pedro Fontao <pedrofontao812004@gmail.com>
Diff between specmine versions 3.1.8 dated 2026-08-05 and 4.0.0 dated 2026-09-08
DESCRIPTION | 14 MD5 | 63 + NAMESPACE | 145 ++- NEWS.md | 27 R/ICA.R | 522 +++++++++++- R/pca.R | 1465 +++++++++++++++++++++++++++++------ R/raman_peak_finding.R |only R/raman_preprocessing.R |only R/raman_transforms.R |only R/t-sne.R | 413 +++++++++ R/umap.R | 352 +++++++- build/partial.rdb |only man/airPLS_fast_dataset.Rd |only man/ica_analysis_dataset.Rd |only man/ica_kmeans_plot2D.Rd |only man/ica_kmeans_plot3D.Rd |only man/ica_loadingsplot.Rd |only man/ica_pairs_kmeans_plot.Rd |only man/ica_pairs_plot.Rd |only man/ica_scoresplot2D.Rd |only man/ica_scoresplot3D.Rd |only man/pca_analysis_dataset.Rd | 84 +- man/pca_importance.Rd |only man/pca_robust.Rd | 94 +- man/pca_scoresplot2D.Rd | 66 + man/pca_scoresplot3D.Rd | 55 - man/pca_scoresplot3D_rgl.Rd | 65 + man/pca_screeplot.Rd | 44 - man/raman_align_peaks.Rd |only man/raman_crop_spectra.Rd |only man/raman_despike.Rd |only man/raman_find_peaks.Rd |only man/raman_normalize.Rd |only man/raman_normalize_peak_features.Rd |only man/raman_sgolay_derivative.Rd |only man/raman_transform_fourier.Rd |only man/raman_transform_wavelet.Rd |only man/tsne_analysis_dataset.Rd |only man/tsne_kmeans_plot2D.Rd |only man/tsne_kmeans_plot3D.Rd |only man/tsne_pairs_kmeans_plot.Rd |only man/tsne_pairs_plot.Rd |only man/tsne_scoresplot2D.Rd |only man/tsne_scoresplot3D.Rd |only man/umap_analysis_dataset.Rd |only man/umap_kmeans_plot2D.Rd |only man/umap_kmeans_plot3D.Rd |only man/umap_pairs_kmeans_plot.Rd |only man/umap_pairs_plot.Rd |only man/umap_scoresplot2D.Rd |only man/umap_scoresplot3D.Rd |only 51 files changed, 2943 insertions(+), 466 deletions(-)
Title: Indices of Productivity Using Data Envelopment Analysis (DEA)
Description: Levels and changes of productivity and profitability are measured with various indices.
The package contains the multiplicatively complete Färe-Primont, Fisher, Hicks-Moorsteen,
Laspeyres, Lowe, and Paasche indices, as well as the classic Malmquist productivity index.
Färe-Primont and Lowe indices verify the transitivity property and can therefore be used for
multilateral or multitemporal comparison.
Fisher, Hicks-Moorsteen, Laspeyres, Malmquist, and Paasche indices are not transitive and are
only to be used for binary comparison.
All indices can also be decomposed into different components, providing insightful information
on the sources of productivity and profitability changes.
In the use of Malmquist productivity index, the technological change index can be further
decomposed into bias technological change components.
The package also allows to prohibit technological regression (negative technological change). In
the case of the Fisher, Hicks-Moorsteen, Laspeyres, Paasche and the t [...truncated...]
Author: K Herve Dakpo [aut],
Yann Desjeux [aut, cre],
Laure Latruffe [aut]
Maintainer: Yann Desjeux <yann.desjeux@inra.fr>
Diff between productivity versions 1.1.0 dated 2018-03-28 and 1.1.2 dated 2026-09-08
DESCRIPTION | 8 ++++---- MD5 | 23 ++++++++++++----------- NEWS.md | 42 ++++++++++++++++++++++++++++++++++++++++++ R/zzz.R | 2 +- build |only inst/CITATION | 4 ++-- man/fareprim.Rd | 6 +++--- man/fisher.Rd | 4 ++-- man/hicksmoorsteen.Rd | 8 ++++---- man/laspeyres.Rd | 2 +- man/lowe.Rd | 6 +++--- man/paasche.Rd | 4 ++-- man/usagri.Rd | 4 ++-- 13 files changed, 78 insertions(+), 35 deletions(-)
Title: Recommended Learners for 'mlr3'
Description: Recommended Learners for 'mlr3'. Extends 'mlr3' with
interfaces to essential machine learning packages on CRAN. This
includes, but is not limited to: (penalized) linear and logistic
regression, linear and quadratic discriminant analysis, k-nearest
neighbors, naive Bayes, support vector machines, and gradient
boosting.
Author: Michel Lang [aut] ,
Quay Au [aut] ,
Stefan Coors [aut] ,
Patrick Schratz [aut] ,
Marc Becker [cre, aut] ,
John Zobolas [aut] ,
Alexander Winterstetter [ctb],
Toby Hocking [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3learners versions 0.15.1 dated 2026-07-25 and 0.16.0 dated 2026-09-08
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 24 +++++++++++++++--------- NEWS.md | 4 ++++ R/LearnerClassifXgboost.R | 31 +++++++++++++++++++++++++------ R/LearnerRegrXgboost.R | 30 ++++++++++++++++++++++++------ man/mlr_learners_classif.xgboost.Rd | 7 +++++++ man/mlr_learners_regr.xgboost.Rd | 7 +++++++ tests/testthat/test_classif_xgboost.R | 34 ++++++++++++++++++++++++++++++++++ tests/testthat/test_regr_xgboost.R | 34 ++++++++++++++++++++++++++++++++++ 10 files changed, 164 insertions(+), 35 deletions(-)
Title: Local Large Language Model Inference Engine
Description: Enables R users to run large language models locally using 'GGUF' model files
and the 'llama.cpp' inference engine. Provides a complete R interface for loading models,
generating text completions, extracting vector representations, and streaming responses in real-time.
Includes grammar-constrained generation for structured output, text classification,
and retrieval-augmented generation (RAG) pipelines. Supports local inference without
requiring cloud APIs or internet connectivity, ensuring complete data privacy and
control. Based on the 'llama.cpp' project by Georgi Gerganov (2023) <https://github.com/ggml-org/llama.cpp>.
Author: Pawan Rama Mali [aut, cre, cph],
Georgi Gerganov [aut, cph] ,
The ggml authors [cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
pi6am [ctb] ,
Ivan Yurchenko [ctb] ,
Dirk Eddelbuettel [ctb, rev]
Maintainer: Pawan Rama Mali <prm@outlook.in>
Diff between edgemodelr versions 0.4.1 dated 2026-05-26 and 0.4.3 dated 2026-09-08
edgemodelr-0.4.1/edgemodelr/tests/testthat/fake_model.gguf |only edgemodelr-0.4.3/edgemodelr/DESCRIPTION | 6 edgemodelr-0.4.3/edgemodelr/MD5 | 105 - edgemodelr-0.4.3/edgemodelr/NEWS.md | 867 +++++----- edgemodelr-0.4.3/edgemodelr/inst/examples/08_rag_pipeline.R | 650 +++---- edgemodelr-0.4.3/edgemodelr/man/edge_ask.Rd | 118 - edgemodelr-0.4.3/edgemodelr/man/edge_chat_completion.Rd | 100 - edgemodelr-0.4.3/edgemodelr/man/edge_classify.Rd | 102 - edgemodelr-0.4.3/edgemodelr/man/edge_embeddings.Rd | 106 - edgemodelr-0.4.3/edgemodelr/man/edge_extract.Rd | 102 - edgemodelr-0.4.3/edgemodelr/man/edge_extract_batch.Rd | 102 - edgemodelr-0.4.3/edgemodelr/man/edge_grammar_completion.Rd | 140 - edgemodelr-0.4.3/edgemodelr/man/edge_index_documents.Rd | 112 - edgemodelr-0.4.3/edgemodelr/man/edge_json_grammar.Rd | 70 edgemodelr-0.4.3/edgemodelr/man/edge_map.Rd | 102 - edgemodelr-0.4.3/edgemodelr/man/edge_model_n_embd.Rd | 50 edgemodelr-0.4.3/edgemodelr/man/edge_search.Rd | 66 edgemodelr-0.4.3/edgemodelr/man/edge_serve.Rd | 108 - edgemodelr-0.4.3/edgemodelr/man/edge_similarity.Rd | 58 edgemodelr-0.4.3/edgemodelr/man/edge_similarity_matrix.Rd | 56 edgemodelr-0.4.3/edgemodelr/src/Makevars | 81 edgemodelr-0.4.3/edgemodelr/src/Makevars.win | 77 edgemodelr-0.4.3/edgemodelr/src/bindings.cpp | 1 edgemodelr-0.4.3/edgemodelr/src/ggml/ggml-backend-dl.h | 1 edgemodelr-0.4.3/edgemodelr/src/ggml/ggml-backend-reg.cpp | 13 edgemodelr-0.4.3/edgemodelr/src/ggml/gguf.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/llama-adapter.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/llama-batch.cpp | 1 edgemodelr-0.4.3/edgemodelr/src/llama/llama-chat.cpp | 3 edgemodelr-0.4.3/edgemodelr/src/llama/llama-context.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/llama-grammar.cpp | 6 edgemodelr-0.4.3/edgemodelr/src/llama/llama-graph.cpp | 1 edgemodelr-0.4.3/edgemodelr/src/llama/llama-graph.h | 1 edgemodelr-0.4.3/edgemodelr/src/llama/llama-impl.cpp | 1 edgemodelr-0.4.3/edgemodelr/src/llama/llama-memory-hybrid-iswa.cpp | 1 edgemodelr-0.4.3/edgemodelr/src/llama/llama-memory-hybrid.cpp | 1 edgemodelr-0.4.3/edgemodelr/src/llama/llama-mmap.cpp | 1 edgemodelr-0.4.3/edgemodelr/src/llama/llama-model-loader.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/llama-model-loader.h | 2 edgemodelr-0.4.3/edgemodelr/src/llama/llama-model-saver.cpp | 1 edgemodelr-0.4.3/edgemodelr/src/llama/llama-sampler.cpp | 1 edgemodelr-0.4.3/edgemodelr/src/llama/llama-vocab.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/models/glm4-moe.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/models/glm4.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/models/paddleocr.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/models/plamo2.cpp | 1 edgemodelr-0.4.3/edgemodelr/src/llama/models/qwen2vl.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/models/qwen35.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/models/qwen35moe.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/models/qwen3vl-moe.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/models/qwen3vl.cpp | 2 edgemodelr-0.4.3/edgemodelr/src/llama/unicode-data.cpp | 1 edgemodelr-0.4.3/edgemodelr/src/llama/unicode-data.h | 1 edgemodelr-0.4.3/edgemodelr/tests/testthat.R | 8 54 files changed, 1696 insertions(+), 1554 deletions(-)
Title: Download and Tidy Australian Taxation Office Data
Description: Fetch Australian Taxation Office (ATO) Taxation
Statistics and related datasets via the data.gov.au Comprehensive
Knowledge Archive Network ('CKAN') API
<https://data.gov.au/data/api/3/>. Provides tidy access to
individual, company, superannuation, goods and services tax
(GST), fringe benefits tax (FBT), Voluntary Tax Transparency
Code (VTTC), Pay As You Go (PAYG) withholding, charity,
excise, and Corporate Tax Transparency data, plus Petroleum
Resource Rent Tax, Medicare Levy Surcharge, and fuel tax
credit aggregates.
Includes reproducibility helpers (snapshot pinning, SHA-256
cache integrity, session manifest, optional 'Zenodo' deposit),
classification crosswalks (ANZSIC 2006 to 2020, ANZSCO 2013
to 2021), panel harmonisation, reconciliation against Final
Budget Outcome totals, and real-terms and per-capita helpers
backed by bundled Australian Bureau of Statistics (ABS)
Consumer Price Index and Estimated Resident Population series.
Bridges to the 'taxstats' 2 per cent microdata [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between ato versions 0.1.0 dated 2026-04-28 and 0.1.1 dated 2026-09-08
DESCRIPTION | 26 ++-- MD5 | 75 +++++++------ NEWS.md | 188 +++++++++++++++++++++++++++++++++++ R/charities.R | 29 ----- R/ckan.R | 68 +++++++++--- R/companies.R | 24 +++- R/compliance.R | 7 - R/constants.R | 7 + R/division293.R | 45 +++----- R/fbt.R | 31 +---- R/fuel_tax_credits.R | 38 ++++--- R/individuals.R | 85 +++++++++------ R/individuals_demographic.R | 24 +++- R/international.R | 15 ++ R/medicare_levy.R | 45 ++++++-- R/payg.R | 29 ----- R/super.R | 16 +- R/top_taxpayers.R | 43 ++++++-- R/utils.R | 88 +++++++++++++++- R/vttc.R | 33 ++++-- R/whm.R | 45 +++----- R/zenodo.R | 8 - inst/WORDLIST | 156 ++++++++++++++++------------- inst/doc/canonical-replications.R | 3 inst/doc/canonical-replications.Rmd | 3 inst/doc/canonical-replications.html | 35 +++--- inst/doc/panel-and-reconcile.R | 2 inst/doc/panel-and-reconcile.Rmd | 2 inst/doc/panel-and-reconcile.html | 2 man/ato_deposit_zenodo.Rd | 8 - man/ato_division293.Rd | 22 ++-- man/ato_fuel_tax_credits.Rd | 19 ++- man/ato_individuals.Rd | 7 - man/ato_international.Rd | 12 +- man/ato_medicare_levy.Rd | 21 ++- man/ato_whm.Rd | 27 ++--- tests/testthat/test-resolution.R |only vignettes/canonical-replications.Rmd | 3 vignettes/panel-and-reconcile.Rmd | 2 39 files changed, 865 insertions(+), 428 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-19 1.3.5
Title: Multivariate Generalized Gaussian Distribution, Multivariate t
Distribution, Multivariate Cauchy Distribution, Statistical
Divergence
Description: Multivariate generalized Gaussian distribution,
Multivariate Cauchy distribution,
Multivariate t distribution.
Distance between two distributions (see N. Bouhlel and A. Dziri (2019): <doi:10.1109/LSP.2019.2915000>,
N. Bouhlel and D. Rousseau (2022): <doi:10.3390/e24060838>,
N. Bouhlel and D. Rousseau (2023): <doi:10.1109/LSP.2023.3324594>).
Manipulation of these multivariate probability distributions.
This package replaces 'mggd', 'mcauchyd' and 'mstudentd'.
Author: Pierre Santagostini [aut, cre],
Nizar Bouhlel [aut]
Maintainer: Pierre Santagostini <pierre.santagostini@institut-agro.fr>
Diff between multvardiv versions 1.0.15 dated 2026-03-05 and 1.0.16 dated 2026-09-08
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 16 ++++++++++------ NEWS.md | 6 ++++++ R/diststudent.R | 3 ++- R/kldggd.R | 6 +++--- build/partial.rdb |binary man/diststudent.Rd | 3 ++- man/kldggd.Rd | 6 +++--- man/multvardiv-package.Rd | 2 +- tests/testthat/test_lauricella.R | 12 ++++++------ 11 files changed, 48 insertions(+), 36 deletions(-)
Title: Regularized Explanatory Generalized Partial Credit Models
Description: Fits explanatory generalized partial credit models and related ordinal item response models with global and item-specific covariate effects. Penalized marginal maximum likelihood estimation is used for variable selection, detection of differential item functioning, and clustering of item-specific covariate effects by fusion penalties. The package extends the regularization approach for differential item functioning in generalized partial credit models proposed by Schauberger and Mair (2020) <doi:10.3758/s13428-019-01224-2>.
Author: Gunther Schauberger [aut, cre]
Maintainer: Gunther Schauberger <gunther.schauberger@tum.de>
Diff between GPCMlasso versions 0.1-9 dated 2026-05-11 and 0.2-0 dated 2026-09-08
GPCMlasso-0.1-9/GPCMlasso/man/print.GPCMlasso.Rd |only GPCMlasso-0.2-0/GPCMlasso/DESCRIPTION | 13 GPCMlasso-0.2-0/GPCMlasso/MD5 | 49 GPCMlasso-0.2-0/GPCMlasso/NAMESPACE | 60 GPCMlasso-0.2-0/GPCMlasso/R/GPCMlasso-package.R | 389 +++- GPCMlasso-0.2-0/GPCMlasso/R/GPCMlasso.R | 612 +++++-- GPCMlasso-0.2-0/GPCMlasso/R/RcppExports.R | 12 GPCMlasso-0.2-0/GPCMlasso/R/ctrl_GPCMlasso.R | 227 +- GPCMlasso-0.2-0/GPCMlasso/R/fit_GPCMlasso.R | 251 +-- GPCMlasso-0.2-0/GPCMlasso/R/fit_cv_GPCMlasso.R | 148 + GPCMlasso-0.2-0/GPCMlasso/R/help_fit.R | 650 +++++-- GPCMlasso-0.2-0/GPCMlasso/R/person.posterior.R | 531 ++++-- GPCMlasso-0.2-0/GPCMlasso/R/plot.GPCMlasso.R | 840 ++++++---- GPCMlasso-0.2-0/GPCMlasso/R/predict.GPCMlasso.R | 517 ++++-- GPCMlasso-0.2-0/GPCMlasso/R/print.GPCMlasso.R | 658 +++++--- GPCMlasso-0.2-0/GPCMlasso/R/reduce_design_global_only.R |only GPCMlasso-0.2-0/GPCMlasso/build |only GPCMlasso-0.2-0/GPCMlasso/man/GPCMlasso-package.Rd | 214 +- GPCMlasso-0.2-0/GPCMlasso/man/GPCMlasso.Rd | 257 ++- GPCMlasso-0.2-0/GPCMlasso/man/ctrl_GPCMlasso.Rd | 146 - GPCMlasso-0.2-0/GPCMlasso/man/plot.GPCMlasso.Rd | 131 - GPCMlasso-0.2-0/GPCMlasso/man/predict.GPCMlasso.Rd | 98 - GPCMlasso-0.2-0/GPCMlasso/man/tenseness.Rd | 50 GPCMlasso-0.2-0/GPCMlasso/man/tenseness_small.Rd | 152 + GPCMlasso-0.2-0/GPCMlasso/man/trait.posterior.Rd | 90 - GPCMlasso-0.2-0/GPCMlasso/src/RcppExports.cpp | 27 GPCMlasso-0.2-0/GPCMlasso/src/cppGPCMlasso.cpp | 1307 ++++++++-------- 27 files changed, 4740 insertions(+), 2689 deletions(-)
Title: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids
and Affinity Propagation Clustering
Description: Gaussian mixture models, k-means, mini-batch-kmeans, k-medoids and affinity propagation clustering with the option to plot, validate, predict (new data) and estimate the optimal number of clusters. The package takes advantage of 'RcppArmadillo' to speed up the computationally intensive parts of the functions. For more information, see (i) "Clustering in an Object-Oriented Environment" by Anja Struyf, Mia Hubert, Peter Rousseeuw (1997), Journal of Statistical Software, <doi:10.18637/jss.v001.i04>; (ii) "Web-scale k-means clustering" by D. Sculley (2010), ACM Digital Library, <doi:10.1145/1772690.1772862>; (iii) "Armadillo: a template-based C++ library for linear algebra" by Sanderson et al (2016), The Journal of Open Source Software, <doi:10.21105/joss.00026>; (iv) "Clustering by Passing Messages Between Data Points" by Brendan J. Frey and Delbert Dueck, Science 16 Feb 2007: Vol. 315, Issue 5814, pp. 972-976, <doi:10.1126/science.1136800>.
Author: Lampros Mouselimis [aut, cre] ,
Conrad Sanderson [cph] ,
Ryan Curtin [cph] ,
Siddharth Agrawal [cph] ),
Brendan Frey [cph] ),
Delbert Dueck [cph] ,
Vitalie Spinu [ctb] ,
Frederiek - Maarten Kerckhof [ctb]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between ClusterR versions 1.3.6 dated 2025-12-22 and 1.3.7 dated 2026-09-08
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/clustering_functions.R | 24 +++++++++++++++++++++--- README.md | 4 ++-- inst/doc/the_clusterR_package.html | 16 ++++++++-------- man/predict_GMM.Rd | 11 +++++++++-- tests/testthat/test-gmm.R | 24 +++++++++++++++--------- 8 files changed, 72 insertions(+), 35 deletions(-)
Title: 'A5' Discrete Global Grid System
Description: Bindings for the "A5 geospatial index"
<https://a5geo.org/>. 'A5' partitions the Earth's surface into
pentagonal cells across 31 resolution levels using an equal-area
projection onto a dodecahedron. Provides functions for indexing
coordinates to cells, traversing the cell hierarchy, computing cell
boundaries, and compacting/uncompacting cell sets. Powered by the
'A5' 'Rust' crate via 'extendr'.
Author: Hugh Graham [aut, cre],
belian.earth [cph]
Maintainer: Hugh Graham <hugh@belian.earth>
Diff between a5R versions 0.5.0 dated 2026-07-01 and 0.6.0 dated 2026-09-08
DESCRIPTION | 6 +- MD5 | 49 +++++++++++----------- NAMESPACE | 1 NEWS.md | 19 ++++++++ R/a5R-package.R | 3 - R/extendr-wrappers.R | 15 ++++++ R/info.R | 39 ++++++++++++++++++ R/regions.R | 36 +++++++++++++--- README.md | 2 build/vignette.rds |binary inst/doc/a5R.R | 12 +++++ inst/doc/a5R.Rmd | 23 ++++++++++ inst/doc/a5R.html | 68 ++++++++++++++++++++----------- man/a5R-package.Rd | 3 - man/a5_cell_edge_length_avg.Rd |only man/a5_polygon_to_cells.Rd | 32 ++++++++++++-- src/Makevars.win.in | 2 src/rust/Cargo.lock | 16 +++---- src/rust/Cargo.toml | 4 - src/rust/src/cell_info.rs | 25 +++++++++++ src/rust/src/regions.rs | 39 ++++++++++++++++-- src/rust/vendor.tar.xz |binary tests/testthat/test-info.R | 49 ++++++++++++++++++++++ tests/testthat/test-regions.R | 88 +++++++++++++++++++++++++++++++++++++++++ tools/config.R | 11 +++++ vignettes/a5R.Rmd | 23 ++++++++++ 26 files changed, 482 insertions(+), 83 deletions(-)
Title: Monetary Policy Shock Series for Empirical Macroeconomics
Description: Provides a curated multi-country collection of monetary
policy shock and stance series from the empirical macroeconomics
literature, bundled as tidy data frames with provenance metadata.
Version 0.1.0 includes thirteen series covering the United States,
United Kingdom, and Australia: for the US, the policy news shock of
Nakamura and Steinsson (2018) <doi:10.1093/qje/qjy004>, the
orthogonalised surprise of Bauer and Swanson (2023)
<doi:10.1086/723574>, the target and path factors of the
Swanson (2021) <doi:10.1016/j.jmoneco.2020.09.003> extension of
Gurkaynak, Sack, and Swanson (2005), the pure monetary policy and
central bank information shocks of Jarocinski and Karadi (2020)
<doi:10.1257/mac.20180090>, the informationally-robust shock of
Miranda-Agrippino and Ricco (2021) <doi:10.1257/mac.20180124>, and
the shadow federal funds rate of Wu and Xia (2016)
<doi:10.1111/jmcb.12300>; for the UK, the UK Monetary Policy
Event-Study Database of Braun, Miran [...truncated...]
Author: Charles Coverdale [aut, cre, cph]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between mpshock versions 0.1.0 dated 2026-04-21 and 0.1.1 dated 2026-09-08
DESCRIPTION | 11 ++++++----- MD5 | 16 ++++++++-------- NEWS.md | 16 ++++++++++++++++ R/data.R | 8 ++++---- R/utils.R | 2 +- README.md | 25 +++++++++++++------------ inst/CITATION | 13 ++++++------- man/bauer_swanson.Rd | 8 ++++---- man/mpshock-package.Rd | 1 + 9 files changed, 59 insertions(+), 41 deletions(-)
Title: Read and Write 'FreeSurfer' Neuroimaging File Formats
Description: Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ/NIFTI format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surfa [...truncated...]
Author: Tim Schaefer [aut, cre] ,
Van Essen Lab [cph] .),
Montreal Neurological Institute [cph] .)
Maintainer: Tim Schaefer <ts+code@rcmd.org>
Diff between freesurferformats versions 1.0.1 dated 2026-07-08 and 1.0.2 dated 2026-09-08
DESCRIPTION | 29 MD5 | 477 +++--- NAMESPACE | 4 R/atlas_lut_csv.R |only R/brainvoyager.R | 540 +++---- R/cifti.R | 272 ++- R/gifti_writer.R | 255 +-- R/gifti_xml_tools.R | 156 +- R/helpers.R | 68 R/mghheader.R | 549 +++---- R/nifti_common.R | 116 - R/nifti_to_mgh.R | 496 +++---- R/optdata.R | 288 ++-- R/read_dti_tcktsf.R | 102 - R/read_dti_trk.R | 163 +- R/read_fs_annot.R | 748 +++++----- R/read_fs_curv.R | 256 +-- R/read_fs_label.R | 160 +- R/read_fs_mgh.R | 610 ++++---- R/read_fs_patch.R | 180 +- R/read_fs_surface.R | 1469 ++++++++++----------- R/read_fs_transform.R | 279 +-- R/read_fs_volume.R | 46 R/read_fs_weight.R | 67 R/read_nifti1.R | 219 +-- R/read_nifti2.R | 183 +- R/read_nisurface.R | 117 - R/rotate3d.R | 188 +- R/safety_checks.R |only R/surface_dist.R | 53 R/write_fs_annot.R | 204 +- R/write_fs_curv.R | 247 +-- R/write_fs_label.R | 105 - R/write_fs_mgh.R | 335 ++-- R/write_fs_patch.R | 92 - R/write_fs_surface.R | 737 +++++----- R/write_fs_volume.R | 138 - R/write_fs_weight.R | 70 - R/write_nifti1.R | 278 +-- R/write_nifti2.R | 248 +-- build/vignette.rds |binary inst/COPYRIGHTS |only inst/doc/freesurferformats.R | 156 +- inst/doc/freesurferformats.Rmd | 156 +- inst/doc/freesurferformats.html | 155 +- inst/doc/freesurferformats_header.R | 21 inst/doc/freesurferformats_header.Rmd | 21 inst/doc/freesurferformats_header.html | 21 inst/doc/freesurferformats_write.R | 64 inst/doc/freesurferformats_write.Rmd | 64 inst/doc/freesurferformats_write.html | 70 - man/annot.unique.Rd | 14 man/atlas.from.lut.and.csv.Rd |only man/bvsmp.Rd | 6 man/check_all_finite.Rd |only man/check_file_size.Rd |only man/closest.vert.to.point.Rd | 6 man/colortable.from.annot.Rd | 33 man/doapply.transform.mtx.Rd | 6 man/download_opt_data.Rd | 6 man/faces.quad.to.tris.Rd | 44 man/faces.tris.to.quad.Rd | 4 man/fixed.vec.format.int.Rd | 2 man/flip2D.Rd | 2 man/flip3D.Rd | 6 man/fs.get.morph.file.ext.for.format.Rd | 40 man/fs.get.morph.file.format.from.filename.Rd | 40 man/fs.patch.Rd | 35 man/get.slice.orientation.Rd | 2 man/get_max_alloc_bytes.Rd |only man/gifti_writer.Rd | 6 man/gifti_xml.Rd | 18 man/gifti_xml_add_global_metadata.Rd | 8 man/gifti_xml_write.Rd | 19 man/is.bvsmp.Rd | 2 man/is.fs.annot.Rd | 2 man/is.fs.label.Rd | 4 man/is.fs.surface.Rd | 2 man/is.fs.volume.Rd | 2 man/is.mghheader.Rd | 2 man/m44_to_quaternion.Rd | 2 man/mgh.is.conformed.Rd | 6 man/mghheader.centervoxelRAS.from.firstvoxelRAS.Rd | 6 man/mghheader.crs.orientation.Rd | 2 man/mghheader.is.conformed.Rd | 4 man/mghheader.is.ras.valid.Rd | 41 man/mghheader.ras2vox.Rd | 37 man/mghheader.ras2vox.tkreg.Rd | 37 man/mghheader.scanner2tkreg.Rd | 37 man/mghheader.tkreg2scanner.Rd | 37 man/mghheader.vox2ras.Rd | 37 man/mghheader.vox2ras.tkreg.Rd | 37 man/mni152reg.Rd | 7 man/ni1header.template.Rd | 4 man/ni2header.template.Rd | 4 man/nifti.datadim.from.dimfield.Rd | 8 man/nifti.datadim.to.dimfield.Rd | 10 man/nifti.dtype.info.Rd | 6 man/nifti.dtypebitpix.info.from.mgh.dtype.Rd | 4 man/nifti.file.uses.fshack.Rd | 2 man/nifti.file.version.Rd | 2 man/nifti.space.info.Rd | 4 man/nifti.time.info.Rd | 4 man/nifti.transform.type.name.Rd | 6 man/nii1header.for.mgh.Rd | 10 man/polygon.soup.to.indexed.mesh.Rd | 4 man/print.fs.annot.Rd | 2 man/print.fs.label.Rd | 2 man/print.fs.patch.Rd | 2 man/print.fs.surface.Rd | 2 man/print.fs.volume.Rd | 2 man/ras.to.talairachras.Rd | 2 man/read.dti.tck.Rd | 4 man/read.dti.trk.Rd | 12 man/read.dti.tsf.Rd | 4 man/read.fs.annot.Rd | 29 man/read.fs.annot.gii.Rd | 8 man/read.fs.colortable.Rd | 28 man/read.fs.curv.Rd | 55 man/read.fs.gca.Rd | 4 man/read.fs.label.Rd | 15 man/read.fs.label.gii.Rd | 20 man/read.fs.label.native.Rd | 25 man/read.fs.mgh.Rd | 69 man/read.fs.morph.Rd | 68 man/read.fs.morph.asc.Rd | 2 man/read.fs.morph.cifti.Rd | 32 man/read.fs.morph.gii.Rd | 52 man/read.fs.morph.txt.Rd | 2 man/read.fs.parcellation.cifti.Rd |only man/read.fs.patch.Rd | 12 man/read.fs.patch.asc.Rd | 12 man/read.fs.series.cifti.Rd |only man/read.fs.surface.Rd | 55 man/read.fs.surface.asc.Rd | 42 man/read.fs.surface.bvsrf.Rd | 40 man/read.fs.surface.byu.Rd | 2 man/read.fs.surface.geo.Rd | 40 man/read.fs.surface.gii.Rd | 48 man/read.fs.surface.ico.Rd | 40 man/read.fs.surface.mz3.Rd | 2 man/read.fs.surface.obj.Rd | 40 man/read.fs.surface.off.Rd | 40 man/read.fs.surface.ply.Rd | 40 man/read.fs.surface.stl.Rd | 2 man/read.fs.surface.stl.ascii.Rd | 4 man/read.fs.surface.stl.bin.Rd | 2 man/read.fs.surface.vtk.Rd | 42 man/read.fs.transform.Rd | 37 man/read.fs.transform.dat.Rd | 37 man/read.fs.transform.lta.Rd | 35 man/read.fs.transform.xfm.Rd | 37 man/read.fs.volume.Rd | 71 - man/read.fs.volume.nii.Rd | 31 man/read.fs.weight.Rd | 44 man/read.fs.weight.asc.Rd | 4 man/read.mesh.brainvoyager.Rd | 40 man/read.nifti1.data.Rd | 2 man/read.nifti2.data.Rd | 2 man/read.smp.brainvoyager.Rd | 15 man/read_nisurface.Rd | 58 man/read_nisurfacefile.Rd | 55 man/read_nisurfacefile.fsascii.Rd | 2 man/read_nisurfacefile.fsnative.Rd | 2 man/read_nisurfacefile.gifti.Rd | 2 man/read_safe_bin.Rd |only man/readable.files.Rd | 2 man/rotate3D.Rd | 4 man/rotate90.Rd | 2 man/sm0to1.Rd | 26 man/sm1to0.Rd | 26 man/surfaceras.to.talairach.Rd | 2 man/talairachras.to.ras.Rd | 2 man/translate.mri.dtype.Rd | 2 man/validate_allocation_size.Rd |only man/vertex.euclid.dist.Rd | 6 man/vertexdists.to.point.Rd | 6 man/write.atlas.to.lut.and.csv.Rd |only man/write.fs.annot.Rd | 49 man/write.fs.annot.gii.Rd | 39 man/write.fs.colortable.Rd | 22 man/write.fs.curv.Rd | 42 man/write.fs.label.Rd | 36 man/write.fs.label.gii.Rd | 55 man/write.fs.mgh.Rd | 44 man/write.fs.morph.Rd | 40 man/write.fs.morph.asc.Rd | 42 man/write.fs.morph.gii.Rd | 48 man/write.fs.morph.ni1.Rd | 46 man/write.fs.morph.ni2.Rd | 44 man/write.fs.morph.smp.Rd | 40 man/write.fs.morph.txt.Rd | 40 man/write.fs.patch.Rd | 10 man/write.fs.surface.Rd | 68 man/write.fs.surface.asc.Rd | 56 man/write.fs.surface.byu.Rd | 54 man/write.fs.surface.gii.Rd | 62 man/write.fs.surface.mz3.Rd | 54 man/write.fs.surface.obj.Rd | 26 man/write.fs.surface.off.Rd | 26 man/write.fs.surface.off.ply2.Rd | 26 man/write.fs.surface.ply.Rd | 39 man/write.fs.surface.ply2.Rd | 26 man/write.fs.surface.vtk.Rd | 54 man/write.fs.volume.Rd | 17 man/write.fs.weight.Rd | 42 man/write.fs.weight.asc.Rd | 42 man/write.nifti1.Rd | 10 man/write.nifti2.Rd | 4 tests/testthat/helper-functions-for-tests.R | 53 tests/testthat/teardown-cran.R | 4 tests/testthat/test-atlas_lut_csv.R |only tests/testthat/test-brainvoyager.R | 124 - tests/testthat/test-cifti.R | 46 tests/testthat/test-cifti2.R |only tests/testthat/test-gifti_writer.R | 27 tests/testthat/test-gifti_xml_tools.R | 37 tests/testthat/test-helpers.R | 22 tests/testthat/test-mgh2nii.R | 139 + tests/testthat/test-mgh_nii_crossfile.R |only tests/testthat/test-mghheader.R | 281 ++-- tests/testthat/test-nifti_to_mgh.R | 62 tests/testthat/test-read_fs_annot.R | 262 +-- tests/testthat/test-read_fs_curv.R | 53 tests/testthat/test-read_fs_label.R | 123 - tests/testthat/test-read_fs_mgh.R | 264 +-- tests/testthat/test-read_fs_patch.R | 68 tests/testthat/test-read_fs_surface.R | 542 +++---- tests/testthat/test-read_fs_transform.R | 74 - tests/testthat/test-read_fs_weight.R | 5 tests/testthat/test-read_nifti1.R | 137 - tests/testthat/test-read_nifti2.R | 95 - tests/testthat/test-read_nisurface.R | 158 +- tests/testthat/test-rotate3d.R | 131 - tests/testthat/test-surface_dist.R | 47 tests/testthat/test-write_fs_annot.R | 170 +- tests/testthat/test-write_fs_curv.R | 177 +- tests/testthat/test-write_fs_label.R | 59 tests/testthat/test-write_fs_mgh.R | 260 ++- tests/testthat/test-write_fs_patch.R | 35 tests/testthat/test-write_fs_surface.R | 176 +- tests/testthat/test-write_fs_weight.R | 47 tests/testthat/test-write_nifti1.R | 116 - tests/testthat/test-write_nifti2.R | 82 - vignettes/freesurferformats.Rmd | 156 +- vignettes/freesurferformats_header.Rmd | 21 vignettes/freesurferformats_write.Rmd | 64 247 files changed, 9547 insertions(+), 9170 deletions(-)
More information about freesurferformats at CRAN
Permanent link
Title: Apply Functions to Blocks of Files
Description: Read and process a large delimited file block by
block. A block consists of all the contiguous rows that have the same value
in the first field. The result can be returned as a list or a data.table,
or even directly printed to an output file.
Author: Federico Marotta [aut, cre]
Maintainer: Federico Marotta <federico.marotta96@gmail.com>
Diff between fplyr versions 1.3.0 dated 2023-08-23 and 2.0.0 dated 2026-09-08
DESCRIPTION | 17 +- MD5 | 44 ++--- R/fdply.R | 6 R/ffply.R | 5 R/flply.R | 6 R/fmply.R | 5 R/ftply.R | 5 R/utils.R | 66 ++++---- build/vignette.rds |binary inst/doc/fplyr.R | 5 inst/doc/fplyr.Rmd | 5 inst/doc/fplyr.html | 326 +++++++++++++++++++++---------------------- man/ffply.Rd | 1 man/flply.Rd | 1 man/fmply.Rd | 1 man/fplyr-package.Rd | 7 man/ftply.Rd | 1 tests/testthat.R | 9 + tests/testthat/test_errors.R | 44 +++-- tests/testthat/test_flply.R | 32 ++-- tests/testthat/test_ftply.R | 4 tests/testthat/test_utils.R | 2 vignettes/fplyr.Rmd | 5 23 files changed, 317 insertions(+), 280 deletions(-)
Title: Tidy Integration of Large Language Models
Description: A tidy interface for integrating large language model (LLM) APIs such as 'Claude', 'OpenAI', 'Gemini', 'Mistral', and local models via 'Ollama' into R workflows. The package supports text, image, audio, video, and document interactions; a unified media interface for attaching inline files or uploading to provider file stores; batch request APIs for cost-efficient large-scale processing; and a pipeline-oriented interface for seamless integration into data workflows. Web services are available at <https://www.anthropic.com>, <https://openai.com>, <https://aistudio.google.com/>, <https://mistral.ai/> and <https://ollama.com>.
Author: Eduard Bruell [aut, cre],
Jia Zhang [ctb]
Maintainer: Eduard Bruell <eduard.bruell@zew.de>
Diff between tidyllm versions 0.5.2 dated 2026-07-30 and 0.6.0 dated 2026-09-08
DESCRIPTION | 35 +-- MD5 | 80 ++++--- NAMESPACE | 14 + NEWS.md | 302 ++++++++++++++++++++++++++++ R/APIProvider.R | 77 +++---- R/api_azure_openai.R | 127 +++++------ R/api_chat_completions.R | 382 +++++++++++++++++++----------------- R/api_claude.R | 320 +++++++++++++++++------------- R/api_deepseek.R | 83 ++++--- R/api_ellmer.R | 43 ++-- R/api_gemini.R | 256 ++++++++++++++---------- R/api_groq.R | 81 ++++--- R/api_llamacpp.R | 80 ++++--- R/api_mistral.R | 88 ++++---- R/api_ollama.R | 187 ++++++++++------- R/api_openai.R | 248 +++++++++++------------ R/api_openrouter.R | 82 +++++-- R/api_perplexity.R | 194 ++++++++++-------- R/async_chat.R |only R/chat_pipeline.R |only R/example_app.R |only R/llm_verbs.R | 158 +++++++++----- R/parallel_chat.R |only R/pdfbatch.R | 24 +- R/perform_api_requests.R | 114 ++++++++-- R/stream_pump.R |only R/tidyllm-package.R | 1 R/tools.R | 26 ++ R/utilites.R | 12 - R/zzz.R | 23 ++ inst/doc/tidyllm.Rmd | 2 inst/doc/tidyllm.html | 6 inst/examples |only man/cancel_job.Rd |only man/chatgpt.Rd | 13 - man/check_job.Rd | 17 + man/fetch_job.Rd | 17 - man/get_partial.Rd |only man/get_stream.Rd |only man/ollama_chat.Rd | 3 man/openai.Rd | 18 - man/parallel_chat.Rd |only man/pdf_page_batch.Rd | 4 man/send_chat.Rd |only man/tidyllm_example_app.Rd |only tests/testthat/test_async_chat.R |only tests/testthat/test_chat_pipeline.R |only vignettes/tidyllm.Rmd | 2 48 files changed, 1953 insertions(+), 1166 deletions(-)
Title: Optimal Test Design Approach to Fixed and Adaptive Test
Construction
Description: Uses the optimal test design approach by Birnbaum (1968, ISBN:9781593119348) and
van der Linden (2018) <doi:10.1201/9781315117430> to construct fixed, adaptive, and parallel tests.
Supports the following mixed-integer programming (MIP) solver packages: 'Rsymphony',
'highs', 'gurobi', 'lpSolve', and 'Rglpk'. The 'gurobi' package is not available from CRAN; see <https://www.gurobi.com/downloads/>.
Author: Seung W. Choi [aut, cre] ,
Sangdon Lim [aut]
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between TestDesign versions 1.7.0 dated 2024-08-22 and 1.7.1 dated 2026-09-08
DESCRIPTION | 22 MD5 | 28 NAMESPACE | 106 +- NEWS.md | 10 R/bayes_functions.R | 10 R/calculate_adaptivity_measures.r | 19 R/plot_functions.R | 4 R/print_functions.R | 4 R/shadow_class.R | 7 R/shadowtest_functions.R | 44 - R/solver_functions.R | 2 R/static_class.R | 6 build/vignette.rds |binary inst/doc/split.html | 1411 ------------------------------------- man/calculateAdaptivityMeasures.Rd | 8 15 files changed, 173 insertions(+), 1508 deletions(-)
Title: Conformal Prediction and Uncertainty Quantification
Description: Implements conformal prediction methods for constructing
prediction intervals (regression) and prediction sets (classification)
with finite-sample coverage guarantees. Methods include split conformal,
'CV+' and 'Jackknife+' (Barber et al. 2021) <doi:10.1214/20-AOS1965>,
'Conformalized Quantile Regression' (Romano et al. 2019)
<doi:10.48550/arXiv.1905.03222>, 'Adaptive Prediction Sets'
(Romano, Sesia, Candes 2020) <doi:10.48550/arXiv.2006.02544>,
'Regularized Adaptive Prediction Sets' (Angelopoulos et al. 2021)
<doi:10.48550/arXiv.2009.14193>, Mondrian conformal prediction for
group-conditional coverage (Vovk, Gammerman, and Shafer 2005)
<doi:10.1007/b106715>, weighted conformal prediction for covariate shift
(Tibshirani et al. 2019) <doi:10.48550/arXiv.1904.06019>, and adaptive
conformal inference for sequential prediction (Gibbs and Candes 2021)
<doi:10.48550/arXiv.2106.00170>.
All methods are distribution-free and provide calibrated uncertain [...truncated...]
Author: Charles Coverdale [aut, cre, cph]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between predictset versions 0.3.0 dated 2026-03-19 and 0.4.0 dated 2026-09-08
DESCRIPTION | 17 +- MD5 | 88 ++++++------ NEWS.md | 118 ++++++++++++++++ R/conformal_aps.R | 61 +++++--- R/conformal_class_split.R | 6 R/conformal_cqr.R | 39 ++++- R/conformal_cv.R | 23 +-- R/conformal_jackknife.R | 73 +++++++-- R/conformal_lac.R | 32 ++-- R/conformal_mondrian.R | 103 ++++++++------ R/conformal_pvalue.R | 18 ++ R/conformal_raps.R | 37 ++--- R/conformal_split.R | 7 R/conformal_weighted.R | 96 ++++++++++--- R/diagnostics.R | 19 ++ R/model_interface.R | 227 +++++++++++++++++++++---------- R/plot.R | 18 ++ R/predict.R | 155 +++++++++------------ R/print.R | 16 ++ R/summary.R | 1 R/utils.R | 214 +++++++++++++++++++++++------ README.md | 97 +++++++++---- inst/CITATION | 14 + inst/doc/predictset.R | 5 inst/doc/predictset.Rmd | 7 inst/doc/predictset.html | 21 +- man/conformal_aci.Rd | 10 + man/conformal_aps.Rd | 37 +++-- man/conformal_class_split.Rd | 9 + man/conformal_cqr.Rd | 9 - man/conformal_cv.Rd | 6 man/conformal_jackknife.Rd | 6 man/conformal_lac.Rd | 19 ++ man/conformal_mondrian_class.Rd | 7 man/conformal_raps.Rd | 14 + man/conformal_split.Rd | 4 man/conformal_weighted.Rd | 46 +++++- man/predict.predictset_reg.Rd | 3 man/predictset-package.Rd | 3 tests/testthat/Rplots.pdf |only tests/testthat/test-audit-regressions.R |only tests/testthat/test-conformal_mondrian.R | 12 + tests/testthat/test-conformal_pvalue.R | 60 +++++++- tests/testthat/test-exact-values.R | 22 ++- tests/testthat/test-validation.R | 8 - vignettes/predictset.Rmd | 7 46 files changed, 1305 insertions(+), 489 deletions(-)
Title: HM Treasury Magenta Book Policy Evaluation Primitives
Description: Implements policy evaluation primitives from HM Treasury
Magenta Book guidance (HM Treasury, 2026): theory of change and
log-frame construction, evaluation planning and stakeholder mapping,
power and minimum-detectable-effect calculations for randomised
designs (including cluster and stepped-wedge designs following
Hussey and Hughes (2007) <doi:10.1016/j.cct.2006.05.007> and
Hemming et al. (2015) <doi:10.1136/bmj.h391>), Maryland Scientific
Methods Scale ratings, structured confidence ratings, light-weight
difference-in-differences and interrupted-time-series estimators
(Bernal et al. (2017) <doi:10.1093/ije/dyw098>) with cluster-robust
standard errors (Cameron and Miller (2015) <doi:10.3368/jhr.50.2.317>),
pre-treatment balance checks (Stuart (2010) <doi:10.1214/09-STS313>),
and cost-effectiveness analysis (cost per outcome, incremental
cost-effectiveness ratio, acceptability curves, incremental net
benefit, quality-adjusted and disability-adjusted life y [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between magentabook versions 0.1.0 dated 2026-04-29 and 0.1.1 dated 2026-09-08
DESCRIPTION | 21 +++--- MD5 | 74 ++++++++++++------------ NEWS.md | 19 ++++++ R/balance.R | 7 +- R/cea.R | 5 + R/confidence.R | 9 +- R/did.R | 4 + R/event_study.R | 6 + R/its.R | 5 + R/magentabook-package.R | 23 +++++-- R/planning.R | 20 +++--- R/power.R | 7 +- R/realist.R | 9 +- R/sms.R | 12 +++ R/theory.R | 15 +++- README.md | 42 ++++++++----- inst/CITATION | 10 ++- inst/doc/cost-effectiveness-with-greenbook.html | 2 inst/doc/magentabook.Rmd | 6 + inst/doc/magentabook.html | 31 +++++----- inst/extdata/data_versions.csv | 10 +-- man/magentabook-package.Rd | 23 +++++-- man/mb_balance_table.Rd | 7 +- man/mb_cmo.Rd | 4 - man/mb_confidence.Rd | 9 +- man/mb_contribution_claim.Rd | 5 - man/mb_counterfactual.Rd | 8 +- man/mb_did_2x2.Rd | 4 + man/mb_evaluation_plan.Rd | 6 - man/mb_event_study.Rd | 6 + man/mb_icer.Rd | 5 + man/mb_its.Rd | 5 + man/mb_logframe.Rd | 10 ++- man/mb_power.Rd | 7 +- man/mb_questions.Rd | 6 - man/mb_sms_rate.Rd | 12 +++ man/mb_theory_of_change.Rd | 5 - vignettes/magentabook.Rmd | 6 + 38 files changed, 306 insertions(+), 159 deletions(-)
Title: Inequality Measurement, Decomposition, and Poverty Analysis
Description: Tools for measuring income and wealth inequality. Computes the
Gini coefficient with bootstrap or asymptotic confidence intervals
following Davidson (2009) <doi:10.1016/j.jeconom.2008.11.004>, the
extended S-Gini family, Theil T and L indices (generalised entropy
family), the Atkinson index, the Kolm absolute inequality index, Palma
ratio, Hoover index, percentile ratios, and Lorenz curves. Supports
between-within group decomposition following Bourguignon (1979)
<doi:10.2307/1914138>, income share tabulation, concentration indices
for health inequality with Erreygers (2009) correction, Kakwani tax
progressivity and Reynolds-Smolensky redistribution indices,
Foster-Greer-Thorbecke poverty measures including the Sen index, growth
incidence curves following Ravallion and Chen (2003)
<doi:10.1016/S0165-1765(02)00205-7>, and Wolfson polarisation. All
functions accept optional survey weights and work with data from any
source.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between inequality versions 0.1.0 dated 2026-04-20 and 0.2.0 dated 2026-09-08
DESCRIPTION | 13 +-- MD5 | 96 +++++++++++------------ NEWS.md | 105 +++++++++++++++++++++++++ R/atkinson.R | 51 +++++++++++- R/compare.R | 135 +++++++++++++++++++++++++-------- R/concentration.R | 115 +++++++++++++++++++++------- R/gini.R | 111 ++++++++++++++++++++------- R/hoover.R | 49 +++++++++-- R/kakwani.R | 129 +++++++++++++++++++++++++------ R/kolm.R | 45 ++++++++--- R/palma.R | 73 ++++++++++++++--- R/percentile_ratio.R | 38 ++++++++- R/polarisation.R | 67 ++++++++++++---- R/poverty.R | 105 ++++++++++++++++++++----- R/sgini.R | 69 ++++++++++++---- R/shares.R | 117 +++++++++++++++++++++++----- R/theil.R | 44 ++++++++++ R/utils.R | 68 ++++++++++++++-- man/inequality-package.Rd | 3 man/iq_atkinson.Rd | 32 +++++++ man/iq_compare.Rd | 48 ++++++++++- man/iq_concentration.Rd | 41 ++++++++-- man/iq_gini.Rd | 52 +++++++++++- man/iq_hoover.Rd | 28 ++++++ man/iq_kakwani.Rd | 32 +++++++ man/iq_kolm.Rd | 24 +++++ man/iq_palma.Rd | 30 ++++++- man/iq_percentile_ratio.Rd | 22 +++++ man/iq_polarisation.Rd | 26 +++++- man/iq_poverty.Rd | 28 +++++- man/iq_sgini.Rd | 32 +++++++ man/iq_shares.Rd | 43 +++++++++- man/iq_theil.Rd | 36 ++++++++ tests/testthat/Rplots.pdf |binary tests/testthat/test-atkinson.R | 9 ++ tests/testthat/test-axioms.R |only tests/testthat/test-compare.R | 19 +++- tests/testthat/test-concentration.R | 9 ++ tests/testthat/test-cross-package.R |only tests/testthat/test-gini.R | 26 ++++++ tests/testthat/test-hoover.R | 7 + tests/testthat/test-kakwani.R | 26 ++++++ tests/testthat/test-kolm.R | 13 +++ tests/testthat/test-palma.R | 7 + tests/testthat/test-percentile_ratio.R | 7 + tests/testthat/test-polarisation.R | 7 + tests/testthat/test-poverty.R | 8 + tests/testthat/test-sgini.R | 13 +++ tests/testthat/test-shares.R | 19 ++++ tests/testthat/test-theil.R | 9 ++ 50 files changed, 1748 insertions(+), 338 deletions(-)
Title: Debt Sustainability Analysis and Fiscal Risk Assessment
Description: Analyses government debt sustainability using the standard debt
dynamics framework from Blanchard (1990) <doi:10.1787/budget-v2-art12-en>
and the IMF Debt Sustainability Analysis methodology (IMF, 2013) and the
Sovereign Risk and Debt Sustainability Framework (IMF, 2022). Projects
debt-to-GDP paths, decomposes historical debt changes into interest,
growth, and primary balance contributions, and estimates fiscal reaction
functions following Bohn (1998) <doi:10.1162/003355398555793>. Produces stochastic
fan charts via Monte Carlo simulation, standardised stress tests, and IMF-
style heat map risk assessments. Computes S1/S2 sustainability gap
indicators used by the European Commission. All methods are pure
computation with no external dependencies beyond base R; works with fiscal
data from any source.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between debtkit versions 0.1.2 dated 2026-03-31 and 0.1.3 dated 2026-09-08
DESCRIPTION | 9 ++++---- MD5 | 12 +++++------ NAMESPACE | 2 + NEWS.md | 5 ++++ R/gfn.R | 51 ++++++++++++++++++++++++++++++++++++++++++++++++- README.md | 23 ++++++++++++++++------ man/debtkit-package.Rd | 1 7 files changed, 86 insertions(+), 17 deletions(-)
Title: Tidy Structural Equation Modeling
Description: A tidy workflow for generating, estimating, reporting,
and plotting structural equation models using 'lavaan', 'OpenMx', or
'Mplus'. Throughout this workflow, elements of syntax, results, and graphs
are represented as 'tidy' data, making them easy to customize.
Includes functionality to estimate latent class analyses, and to plot
'dagitty' and 'igraph' objects.
Author: Caspar J. van Lissa [aut, cre] ,
Mauricio Garnier-Villarreal [ctb] ,
Frank C Gootjes [ctb]
Maintainer: Caspar J. van Lissa <c.j.vanlissa@tilburguniversity.edu>
Diff between tidySEM versions 0.2.11 dated 2026-08-20 and 0.2.12 dated 2026-09-08
DESCRIPTION | 14 MD5 | 108 ++--- NAMESPACE | 20 - R/knn_impute.R |only R/mixture-pseudo_class.R | 83 ++-- R/motley_functions.R | 41 +- R/mx_mixture.R | 1 R/plot-generate_layout.R | 17 R/plot-mixture_densities.R | 127 +----- R/random_starts.R |only R/results-table_results_mx_model.R | 5 inst/doc/Plotting_graphs.R | 6 inst/doc/Plotting_graphs.Rmd | 13 inst/doc/Plotting_graphs.html | 72 +-- inst/doc/SMART_LCA_checklist.html | 2 inst/doc/mixed_lca.html | 60 ++- man/deviances_to_thresholds.Rd | 208 +++++------ man/format_numeric.Rd |only man/random_starts.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/_problems/test-graph_sem_label-21.R | 26 - tests/testthat/_problems/test-graph_sem_label-27.R | 26 - tests/testthat/_problems/test-graph_sem_label-33.R | 26 - tests/testthat/_problems/test-graph_sem_label-39.R | 26 - tests/testthat/_problems/test-plot_digits-6.R | 10 tests/testthat/_problems/test-plot_if_edit-6.R | 26 - tests/testthat/_problems/test-plot_if_edit_overwrite_aes-3.R | 10 tests/testthat/test-plot_igraph.R | 151 ++++--- tests/testthat/test-pseudo_class_technique.R | 18 vignettes/Plotting_graphs.Rmd | 13 vignettes/gmm_bivariate_bic.png |binary vignettes/gmm_plotfit.png |binary vignettes/gmm_results.csv | 24 - vignettes/lca_aux_dep.RData |binary vignettes/lca_conf_res.csv | 40 +- vignettes/lca_plot_desc.png |binary vignettes/lca_prob.png |binary vignettes/lca_res.RData |binary vignettes/lcga_plot_fit.png |binary vignettes/lcga_tab_res.csv | 150 +++---- vignettes/lpa_bivariate.png |binary vignettes/lpa_fit_compare.csv | 4 vignettes/lpa_tab_res.csv | 48 +- vignettes/lpatabfit.csv | 8 vignettes/lpatablmr.csv | 8 vignettes/mixed_lca_bivariate.png |binary vignettes/mixed_lca_prob.png |binary vignettes/mixed_lca_profiles.png |binary vignettes/mixed_lca_res2.csv | 34 - vignettes/plot_dist.png |binary vignettes/plot_gmm_desc.png |binary vignettes/plot_gmm_desc_log.png |binary vignettes/plot_gmm_scatter.png |binary vignettes/plot_lpa_desc.png |binary vignettes/plot_traj.png |binary vignettes/plot_trans.png |binary vignettes/res_step.RData |binary 57 files changed, 686 insertions(+), 739 deletions(-)
Title: Simulating and Modeling Group (Pooled) Testing Data
Description: Provides an expectation-maximization (EM) algorithm using the approach introduced in Warasi (2023) <doi:10.1080/03610918.2021.2009867>. The EM algorithm can be used to estimate the prevalence (overall proportion) of a disease and to estimate a binary regression model from among the class of generalized linear models based on group testing data. The estimation framework we consider offers a flexible and general approach; i.e., its application is not limited to any specific group testing protocol. Consequently, the EM algorithm can model data arising from simple pooling as well as advanced pooling such as hierarchical testing, array testing, and quality control pooling. Also, provided are functions that can be used to conduct the Wald tests described in Buse (1982) <doi:10.1080/00031305.1982.10482817> and to simulate the group testing data described in Kim et al. (2007) <doi:10.1111/j.1541-0420.2007.00817.x>. We offer a function to compute relative efficiency measures, [...truncated...]
Author: Md S. Warasi [aut, cre]
Maintainer: Md S. Warasi <msarker@radford.edu>
This is a re-admission after prior archival of version 1.3.0 dated 2024-08-17
Diff between groupTesting versions 1.3.0 dated 2024-08-17 and 1.3.1 dated 2026-09-08
DESCRIPTION | 16 +-- MD5 | 35 ++++--- NAMESPACE | 9 - R/gtData_doc.R |only R/gtcode.R | 175 +++++++++++++++++++++++++++----------- R/linkfns.R | 103 +++++++++++++++------- R/propEM.R | 203 ++++++++++++++++++++++++++++----------------- R/prop_eff_main.R | 13 +- R/prop_eff_main_SUB.R | 56 ++++++++---- R/regEM.R | 198 +++++++++++++++++++++++++++++-------------- R/waldTest.R | 10 -- build |only man/array.gt.simulation.Rd | 6 - man/glm.gt.Rd | 60 +++++-------- man/glmLink.Rd | 20 +++- man/gtData.Rd |only man/hier.gt.simulation.Rd | 67 +++++++++----- man/mle.prop.eff.Rd | 8 - man/prop.gt.Rd | 85 ++++++++---------- man/waldTest.Rd | 6 - 20 files changed, 663 insertions(+), 407 deletions(-)
Title: Forecasting Models for Intermittent Time Series
Description: Extends the 'fable' framework to support forecasting methods
specifically designed for intermittent time series data, where demand
occurs sporadically with many zero values. All methods produce probabilistic
forecasts returned as 'distributional' objects. The returned forecasts can be
used to evaluate accuracy, plot and print the results seamlessly with 'fable'.
The methods include:
Harvey, Fernandes (1989) <doi:10.1080/07350015.1989.10509750>,
Willemain, Smart, Schwarz (2004) <doi:10.1016/S0169-2070(03)00013-X>,
Zhou, Viswanathan (2011) <doi:10.1016/j.ijpe.2010.09.021>,
Snyder, Ord, Beaumont (2012) <doi:10.1016/j.ijforecast.2011.03.009>,
Kolassa (2016) <doi:10.1016/j.ijforecast.2015.12.004>,
Hasni, Aguir, Babai, Jemai (2019) <doi:10.1080/00207543.2018.1424375>,
Damato, Azzimonti, Corani (2025) <doi:10.1016/j.ijforecast.2025.10.001>,
Sbrana (2025) <doi:10.1080/01605682.2025.2569661>,
Sbrana, Babai (2026) <doi:10.1016/j.ejor.2026.06.009 [...truncated...]
Author: Stefano Damato [aut, cre, cph] ,
Lorenzo Zambon [aut] ,
Dario Azzimonti [aut]
Maintainer: Stefano Damato <stefanodamato128@gmail.com>
Diff between fable.intermittent versions 0.2.0 dated 2026-07-27 and 0.3.0 dated 2026-09-08
fable.intermittent-0.2.0/fable.intermittent/R/empdistr.R |only fable.intermittent-0.2.0/fable.intermittent/R/staticdistr.R |only fable.intermittent-0.2.0/fable.intermittent/man/EMPDISTR.Rd |only fable.intermittent-0.2.0/fable.intermittent/man/STATICDISTR.Rd |only fable.intermittent-0.2.0/fable.intermittent/man/fitted.EMPDISTR.Rd |only fable.intermittent-0.2.0/fable.intermittent/man/fitted.STATICDISTR.Rd |only fable.intermittent-0.2.0/fable.intermittent/man/forecast.EMPDISTR.Rd |only fable.intermittent-0.2.0/fable.intermittent/man/forecast.STATICDISTR.Rd |only fable.intermittent-0.2.0/fable.intermittent/man/generate.EMPDISTR.Rd |only fable.intermittent-0.2.0/fable.intermittent/man/generate.STATICDISTR.Rd |only fable.intermittent-0.2.0/fable.intermittent/man/residuals.EMPDISTR.Rd |only fable.intermittent-0.2.0/fable.intermittent/man/residuals.STATICDISTR.Rd |only fable.intermittent-0.2.0/fable.intermittent/tests/testthat/test-empdistr.R |only fable.intermittent-0.2.0/fable.intermittent/tests/testthat/test-staticdistr.R |only fable.intermittent-0.3.0/fable.intermittent/DESCRIPTION | 21 fable.intermittent-0.3.0/fable.intermittent/MD5 | 138 ++- fable.intermittent-0.3.0/fable.intermittent/NAMESPACE | 143 ++-- fable.intermittent-0.3.0/fable.intermittent/NEWS.md | 32 fable.intermittent-0.3.0/fable.intermittent/R/RcppExports.R | 4 fable.intermittent-0.3.0/fable.intermittent/R/betanbb.R | 23 fable.intermittent-0.3.0/fable.intermittent/R/data.R | 57 + fable.intermittent-0.3.0/fable.intermittent/R/empsd.R |only fable.intermittent-0.3.0/fable.intermittent/R/fable.intermittent-package.R | 8 fable.intermittent-0.3.0/fable.intermittent/R/gampoisb.R | 27 fable.intermittent-0.3.0/fable.intermittent/R/hspes.R | 82 -- fable.intermittent-0.3.0/fable.intermittent/R/marwal.R | 56 - fable.intermittent-0.3.0/fable.intermittent/R/negbines.R | 44 - fable.intermittent-0.3.0/fable.intermittent/R/nnarma.R |only fable.intermittent-0.3.0/fable.intermittent/R/paramsd.R |only fable.intermittent-0.3.0/fable.intermittent/R/twees.R | 214 +++--- fable.intermittent-0.3.0/fable.intermittent/R/utils.R | 350 +++++++++- fable.intermittent-0.3.0/fable.intermittent/R/vz.R | 9 fable.intermittent-0.3.0/fable.intermittent/R/wss.R | 9 fable.intermittent-0.3.0/fable.intermittent/README.md | 26 fable.intermittent-0.3.0/fable.intermittent/data/tinyM5.rda |only fable.intermittent-0.3.0/fable.intermittent/inst/doc/fable.intermittent.R | 2 fable.intermittent-0.3.0/fable.intermittent/inst/doc/fable.intermittent.Rmd | 6 fable.intermittent-0.3.0/fable.intermittent/inst/doc/fable.intermittent.html | 48 - fable.intermittent-0.3.0/fable.intermittent/man/EMPSD.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/NNARMA.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/PARAMSD.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/TWEES.Rd | 12 fable.intermittent-0.3.0/fable.intermittent/man/fable.intermittent-package.Rd | 3 fable.intermittent-0.3.0/fable.intermittent/man/fitted.EMPSD.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/fitted.NNARMA.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/fitted.PARAMSD.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/forecast.BETANBB.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/forecast.EMPSD.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/forecast.GAMPOISB.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/forecast.HSPES.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/forecast.MARWAL.Rd | 4 fable.intermittent-0.3.0/fable.intermittent/man/forecast.NEGBINES.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/forecast.NNARMA.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/forecast.PARAMSD.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/forecast.TWEES.Rd | 5 fable.intermittent-0.3.0/fable.intermittent/man/forecast.VZ.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/forecast.WSS.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/generate.BETANBB.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/generate.EMPSD.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/generate.GAMPOISB.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/generate.HSPES.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/generate.MARWAL.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/generate.NEGBINES.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/generate.NNARMA.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/generate.PARAMSD.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/generate.TWEES.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/generate.VZ.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/generate.WSS.Rd | 2 fable.intermittent-0.3.0/fable.intermittent/man/residuals.EMPSD.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/residuals.NNARMA.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/residuals.PARAMSD.Rd |only fable.intermittent-0.3.0/fable.intermittent/man/tinyM5.Rd |only fable.intermittent-0.3.0/fable.intermittent/src/RcppExports.cpp | 15 fable.intermittent-0.3.0/fable.intermittent/src/arma.cpp |only fable.intermittent-0.3.0/fable.intermittent/src/bayesian.cpp | 8 fable.intermittent-0.3.0/fable.intermittent/tests/testthat/helper.R | 41 + fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-betanbb.R | 32 fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-data.R |only fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-empsd.R |only fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-gampoisb.R | 37 + fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-hspes.R | 47 + fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-marwal.R | 55 + fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-negbines.R | 41 + fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-nnarma.R |only fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-paramsd.R |only fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-twees.R | 49 + fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-utils.R |only fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-vz.R | 36 + fable.intermittent-0.3.0/fable.intermittent/tests/testthat/test-wss.R | 46 + fable.intermittent-0.3.0/fable.intermittent/vignettes/fable.intermittent.Rmd | 6 90 files changed, 1307 insertions(+), 457 deletions(-)
More information about fable.intermittent at CRAN
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Title: Covariate-Adaptive Randomization for Clinical Trials
Description: Provides functions and command-line user interface to generate allocation sequence by covariate-adaptive randomization for clinical trials. The package currently supports six covariate-adaptive randomization procedures. Three hypothesis testing methods that are valid and robust under covariate-adaptive randomization are also available in the package to facilitate the inference for treatment effect under the included randomization procedures. Additionally, the package provides comprehensive and efficient tools to allow one to evaluate and compare the performance of randomization procedures and tests based on various criteria. See Ma W, Ye X, Tu F, and Hu F (2023) <doi: 10.18637/jss.v107.i02> for details.
Author: Fuyi Tu [aut, cre],
Xiaoqing Ye [aut],
Wei Ma [aut, ths],
Feifang Hu [aut, ths]
Maintainer: Fuyi Tu <tufy@cqupt.edu.cn>
This is a re-admission after prior archival of version 2.2.1 dated 2023-09-05
Diff between carat versions 2.2.1 dated 2023-09-05 and 2.3.0 dated 2026-09-08
DESCRIPTION | 26 +++++++++++++------------- MD5 | 10 +++++----- R/rand_completeData.R | 2 +- R/rand_evalRand.R | 6 +++--- R/rand_generatingData.R | 12 ++++++------ inst/NEWS.Rd | 6 ++++++ 6 files changed, 34 insertions(+), 28 deletions(-)
Title: Exact Sequential Analysis for Poisson and Binomial Data
Description: Functions to calculate exact critical values, statistical power, expected time to signal, and required sample sizes for performing exact sequential analysis. All these calculations can be done for either Poisson or binomial data, for continuous or group sequential analyses, and for different types of rejection boundaries. In case of group sequential analyses, the group sizes do not have to be specified in advance and the alpha spending can be arbitrarily settled. For regression versions of the methods, Monte Carlo and asymptotic methods are used.
Author: Ivair Ramos Silva [aut, cre],
Martin Kulldorff [aut]
Maintainer: Ivair Ramos Silva <ivair@ufop.edu.br>
Diff between Sequential versions 4.6.1 dated 2026-07-05 and 4.6.2 dated 2026-09-08
DESCRIPTION | 8 +- MD5 | 8 +- R/Analyze.Multinomial.R | 155 +++++++++++++++++++++------------------------ man/Analyze.Multinomial.Rd | 12 +-- man/Sequential-package.Rd | 7 +- 5 files changed, 92 insertions(+), 98 deletions(-)
Title: Automatic Stacked Ensemble for Regression Tasks
Description: Stacked ensembles for regression tasks using the 'mlr3' framework,
internal preprocessing and out-of-fold stacking, and hyperparameter tuning
using grid or random search. Supports numeric and categorical predictors.
Author: Giancarlo Vercellino [aut, cre]
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
Diff between sense versions 1.1.0 dated 2024-06-19 and 1.2.0 dated 2026-09-08
DESCRIPTION | 43 ++-- MD5 | 23 +- NAMESPACE | 17 - NEWS.md | 44 ++++ R/ensemble.R |only R/main.R | 420 ++++++++++++++++++--------------------------- R/preprocess.R |only R/sense.R | 2 R/tuning.R |only build |only inst |only man/plot.sense_pipeline.Rd |only man/sense.Rd | 43 +++- tests |only vignettes |only 15 files changed, 288 insertions(+), 304 deletions(-)
Title: Radiocarbon Calibration Curves
Description: The IntCal20 radiocarbon calibration curves (Reimer et al. 2020 <doi:10.1017/RDC.2020.68>) are provided as a data package, together with previous IntCal curves (IntCal13, IntCal09, IntCal04, IntCal98), other curves (e.g., NOTCal04 [van der Plicht et al. 2004], Arnold & Libby 1951, Stuiver & Suess 1966, Pearson & Stuiver 1986) and postbomb curves. Also provided are functions to copy the curves into memory, and to read, query and plot the data underlying the IntCal20 curves.
Author: Maarten Blaauw [aut, cre] ,
Christopher Bronk Ramsey [ctb]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rintcal versions 1.4.1 dated 2026-06-23 and 1.4.2 dated 2026-09-08
rintcal-1.4.1/rintcal/inst/extdata/Santos.14C |only rintcal-1.4.2/rintcal/DESCRIPTION | 16 - rintcal-1.4.2/rintcal/MD5 | 33 +-- rintcal-1.4.2/rintcal/NAMESPACE | 66 ++++--- rintcal-1.4.2/rintcal/NEWS.md | 7 rintcal-1.4.2/rintcal/R/data.R | 37 ++- rintcal-1.4.2/rintcal/R/file_formatting.R | 7 rintcal-1.4.2/rintcal/R/intcal_json.R | 24 +- rintcal-1.4.2/rintcal/R/rintcal.R | 223 +++++++++++------------- rintcal-1.4.2/rintcal/build/partial.rdb |binary rintcal-1.4.2/rintcal/build/vignette.rds |binary rintcal-1.4.2/rintcal/inst/doc/rintcal.html | 32 +-- rintcal-1.4.2/rintcal/man/ccurve.Rd | 49 ++++- rintcal-1.4.2/rintcal/man/glue.ccurves.Rd | 4 rintcal-1.4.2/rintcal/man/intcal.data.Rd | 3 rintcal-1.4.2/rintcal/man/intcal.plot.record.Rd | 8 rintcal-1.4.2/rintcal/man/list.ccurves.Rd | 1 rintcal-1.4.2/rintcal/man/mix.ccurves.Rd | 4 18 files changed, 288 insertions(+), 226 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
functionality deliberately similar to Matlab. It is useful for algorithm development
directly in C++, or quick conversion of research code into production environments.
It provides efficient classes for vectors, matrices and cubes where dense and sparse
matrices are supported. Integer, floating point and complex numbers are supported.
A sophisticated expression evaluator (based on template meta-programming) automatically
combines several operations to increase speed and efficiency. Dynamic evaluation
automatically chooses optimal code paths based on detected matrix structures.
Matrix decompositions are provided through integration with LAPACK, or one of its
high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can
automatically use 'OpenMP' multi-threading (parallelisation) to speed up
computationally expensive operations [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 15.4.2-1 dated 2026-07-25 and 15.6.0-1 dated 2026-09-08
RcppArmadillo-15.4.2-1/RcppArmadillo/inst/include/armadillo_bits/fn_inplace_strans.hpp |only RcppArmadillo-15.4.2-1/RcppArmadillo/inst/include/armadillo_bits/fn_inplace_trans.hpp |only RcppArmadillo-15.4.2-1/RcppArmadillo/inst/include/armadillo_bits/fn_strans.hpp |only RcppArmadillo-15.4.2-1/RcppArmadillo/inst/include/armadillo_bits/fn_trans.hpp |only RcppArmadillo-15.6.0-1/RcppArmadillo/ChangeLog | 13 RcppArmadillo-15.6.0-1/RcppArmadillo/DESCRIPTION | 8 RcppArmadillo-15.6.0-1/RcppArmadillo/MD5 | 72 +- RcppArmadillo-15.6.0-1/RcppArmadillo/configure | 18 RcppArmadillo-15.6.0-1/RcppArmadillo/configure.ac | 2 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/NEWS.Rd | 14 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo | 12 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/BaseCube_bones.hpp | 4 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/BaseCube_meat.hpp | 30 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp | 8 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 76 -- RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp | 10 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 96 -- RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/SpMat_bones.hpp | 6 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/SpMat_meat.hpp | 48 - RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/arma_forward.hpp | 1 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 6 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/field_bones.hpp | 7 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/field_meat.hpp | 48 - RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_cubemul.hpp |only RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_inplace_xtrans.hpp |only RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_permute.hpp |only RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_powext.hpp | 73 -- RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/fn_xtrans.hpp |only RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_cubemul_bones.hpp |only RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_cubemul_meat.hpp |only RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_powext_bones.hpp | 12 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_powext_meat.hpp | 359 ---------- RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_solve_bones.hpp | 3 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_solve_meat.hpp | 23 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/glue_times_misc_meat.hpp | 4 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/op_htrans_bones.hpp | 11 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/op_htrans_meat.hpp | 86 ++ RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/op_permute_bones.hpp |only RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/op_permute_meat.hpp |only RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/op_strans_bones.hpp | 14 RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/op_strans_meat.hpp | 48 + RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/strip.hpp | 158 ++++ RcppArmadillo-15.6.0-1/RcppArmadillo/inst/include/armadillo_bits/traits.hpp | 145 ++-- 43 files changed, 520 insertions(+), 895 deletions(-)
Title: Methods and Classes for the OMOP Common Data Model
Description: Provides definitions of core classes and methods used by analytic
pipelines that query the OMOP (Observational Medical Outcomes Partnership)
common data model.
Author: Marti Catala [aut, cre] ,
Edward Burn [aut] ,
Mike Du [ctb] ,
Yuchen Guo [ctb] ,
Adam Black [ctb] ,
Marta Alcalde-Herraiz [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between omopgenerics versions 1.4.1 dated 2026-07-23 and 1.4.2 dated 2026-09-08
DESCRIPTION | 6 MD5 | 72 +- NEWS.md | 5 R/documentationHelpers.R | 7 R/exportCodelist.R | 1 R/exportCodelistWithDetails.R | 1 R/exportConceptSetExpression.R | 1 R/importConceptSetExpression.R | 3 R/sysdata.rda |binary R/utilities.R | 8 data/supportedCdmVersions.rda |binary inst/doc/expanding_omopgenerics.R | 4 inst/doc/expanding_omopgenerics.Rmd | 4 inst/doc/expanding_omopgenerics.html | 4 inst/doc/logging.html | 52 - inst/doc/summarised_result.html | 886 +++++++++++++-------------- man/achillesColumns.Rd | 3 man/achillesTables.Rd | 3 man/cdmFromTables.Rd | 4 man/cdmVersionArgumentDoc.Rd | 4 man/cohortColumns.Rd | 3 man/cohortTables.Rd | 3 man/compareOmopTableFields.Rd | 8 man/emptyCdmReference.Rd | 4 man/newAchillesTable.Rd | 3 man/newCdmReference.Rd | 4 man/newOmopTable.Rd | 3 man/omopCdmVersionDoc.Rd | 3 man/omopColumns.Rd | 3 man/omopTables.Rd | 3 man/validateAchillesTable.Rd | 3 man/validateOmopTable.Rd | 3 tests/testthat/test-classCdmReference.R | 14 tests/testthat/test-emptyObjects.R | 2 tests/testthat/test-exportSummarisedResult.R | 2 tests/testthat/test-utilities.R | 18 vignettes/expanding_omopgenerics.Rmd | 4 37 files changed, 601 insertions(+), 550 deletions(-)
Title: Kernel Fisher Discriminant Analysis
Description: Kernel Fisher Discriminant Analysis (KFDA) is performed using Kernel Principal Component Analysis (KPCA) and Fisher Discriminant Analysis (FDA).
There are some similar packages. First, 'lfda' is a package that performs Local Fisher Discriminant Analysis (LFDA) and performs other functions.
In particular, 'lfda' seems to be impossible to test because it needs the label information of the data in the function argument. Also, the 'ks' package has a limited dimension, which makes it difficult to analyze properly.
This package is a simple and practical package for KFDA based on the paper of Yang, J., Jin, Z., Yang, J. Y., Zhang, D., and Frangi, A. F. (2004) <DOI:10.1016/j.patcog.2003.10.015>.
Author: Donghwan Kim [aut, cre]
Maintainer: Donghwan Kim <donhkim9714@korea.ac.kr>
Diff between kfda versions 1.0.0 dated 2017-09-27 and 1.0.1 dated 2026-09-08
DESCRIPTION | 15 +++++++++------ MD5 | 4 ++-- man/kfda.Rd | 2 +- 3 files changed, 12 insertions(+), 9 deletions(-)
Title: Multivariate Exploratory Data Analysis and Data Mining
Description: Exploratory data analysis methods to summarize, visualize and describe datasets. The main principal component methods are available, those with the largest potential in terms of applications: principal component analysis (PCA) when variables are quantitative, correspondence analysis (CA) and multiple correspondence analysis (MCA) when variables are categorical, Multiple Factor Analysis when variables are structured in groups, etc. and hierarchical cluster analysis. F. Husson, S. Le and J. Pages (2017).
Author: Francois Husson [aut, cre] ,
Julie Josse [aut],
Sebastien Le [aut],
Jeremy Mazet [aut]
Maintainer: Francois Husson <francois.husson@institut-agro.fr>
Diff between FactoMineR versions 2.16 dated 2026-07-02 and 2.17 dated 2026-09-08
DESCRIPTION | 8 +++---- MD5 | 26 +++++++++++------------ NAMESPACE | 1 R/CA.R | 2 - R/DMFA.R | 2 - R/FAMD.R | 2 - R/GPA.R | 3 -- R/HMFA.R | 4 +-- R/MCA.R | 2 - R/MFA.R | 2 - R/PCA.R | 2 - R/theme_factominer.R | 54 +++++++++++++++++++++++++++--------------------- R/zz.R | 9 ++++++++ man/theme_factominer.Rd | 4 +-- 14 files changed, 68 insertions(+), 53 deletions(-)
Title: A Goodness-of-Fit Test for Elliptical Distributions with
Diagnostic Capabilities
Description: A goodness-of-fit test for elliptical distributions with diagnostic
capabilities. Gilles R. Ducharme, Pierre Lafaye de Micheaux (2020) <doi:10.1016/j.jmva.2020.104602>.
Author: Gilles R Ducharme [aut],
Pierre Lafaye De Micheaux [aut, cre]
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Diff between ECGofTestDx versions 0.5 dated 2024-10-11 and 0.6 dated 2026-09-08
DESCRIPTION | 8 +-- MD5 | 8 +-- NAMESPACE | 1 R/SmoothECTest.R | 131 ++++++++++++++++++++++++++++++++++++++++++++++--------- inst/HISTORY | 10 ++++ 5 files changed, 130 insertions(+), 28 deletions(-)
Title: Vectorised Probability Distributions
Description: Vectorised distribution objects with tools for manipulating,
visualising, and using probability distributions. Designed to allow model
prediction outputs to return distributions rather than their parameters,
allowing users to directly interact with predictive distributions in a
data-oriented workflow. In addition to providing generic replacements for
p/d/q/r functions, other useful statistics can be computed including means,
variances, intervals, and highest density regions.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Matthew Kay [aut] ,
Alex Hayes [aut] ,
Rob Hyndman [aut] ,
Earo Wang [ctb] ,
Vencislav Popov [ctb] ,
Stefano Damato [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between distributional versions 0.8.1 dated 2026-06-27 and 0.9.0 dated 2026-09-08
DESCRIPTION | 19 +- MD5 | 63 ++++-- NAMESPACE | 34 +++ NEWS.md | 33 +++ R/default.R | 26 ++ R/dist_cdf.R |only R/dist_convolved.R | 308 ++++++++++++++++++++++++++++------ R/dist_density.R |only R/dist_hypergeometric.R | 12 - R/dist_percentile.R | 63 +++++- R/dist_transformed.R | 79 +++++++- R/dist_tweedie.R |only R/distribution.R | 113 +++++++++++- R/utils.R | 73 +++++++- build |only inst |only man/cdf.Rd | 4 man/density.distribution.Rd | 4 man/dist_cdf.Rd |only man/dist_convolved.Rd | 45 +++- man/dist_density.Rd |only man/dist_quantile.Rd | 7 man/dist_transformed.Rd | 19 +- man/dist_tweedie.Rd |only man/distributional-package.Rd | 1 man/family.distribution.Rd | 35 +++ man/generate.distribution.Rd | 11 + man/parameters.Rd | 28 ++- man/quantile.distribution.Rd | 4 tests/testthat/test-apply.R | 62 ++++++ tests/testthat/test-dist-cdf.R |only tests/testthat/test-dist-convolved.R | 115 ++++++++++++ tests/testthat/test-dist-density.R |only tests/testthat/test-dist-tweedie.R |only tests/testthat/test-distribution.R | 144 +++++++++++++++ tests/testthat/test-transformations.R | 48 +++++ vignettes |only 37 files changed, 1203 insertions(+), 147 deletions(-)
More information about distributional at CRAN
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Title: 'parsnip' Engines for Survival Models
Description: Engines for survival models from the 'parsnip' package. These
include parametric models (e.g., Jackson (2016)
<doi:10.18637/jss.v070.i08>), semi-parametric (e.g., Simon et al
(2011) <doi:10.18637/jss.v039.i05>), and tree-based models (e.g.,
Buehlmann and Hothorn (2007) <doi:10.1214/07-STS242>).
Author: Emil Hvitfeldt [aut] ,
Hannah Frick [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between censored versions 0.3.4 dated 2026-04-04 and 0.3.5 dated 2026-09-08
DESCRIPTION | 6 MD5 | 12 - NEWS.md | 4 tests/testthat/_snaps/proportional_hazards-glmnet.md | 155 +++++++------------ tests/testthat/test-bag_tree-rpart.R | 24 -- tests/testthat/test-proportional_hazards-glmnet.R | 5 tests/testthat/test-proportional_hazards-survival.R | 2 7 files changed, 78 insertions(+), 130 deletions(-)
Title: A Unified Framework for Versioned, Traceable Tabular Data
Description: Provides versioned storage for tabular data without a database
or a server. Each table is written as an immutable, content-addressed
version -- identical content is detected and stored only once -- while its
version history and metadata are kept as code in a 'git' repository and the
data itself in a local filesystem or cloud object storage ('S3'). Any past
version can be read back exactly by its identifier, and each table records
the sources it was derived from, so a project carries full data lineage. A
lightweight reader role retrieves current or historical data from storage
alone, without 'git' or write access, giving downstream analyses and
pipelines a single versioned source of truth. It targets analytical and
scientific data management, such as preparing clinical study datasets, and
is designed as a foundation for higher-level governance tooling.
Author: Afshin Mashadi-Hossein [aut, cre, cph]
Maintainer: Afshin Mashadi-Hossein <amashadihossein@gmail.com>
Diff between datom versions 0.1.1 dated 2026-09-01 and 0.1.2 dated 2026-09-08
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 14 ++++++++++++++ tests/testthat/helper-git.R |only tests/testthat/test-conn.R | 8 ++++---- tests/testthat/test-identity-contract.R | 2 +- tests/testthat/test-sync.R | 18 +++++++++--------- tests/testthat/test-utils-git.R | 7 +++++-- 8 files changed, 43 insertions(+), 25 deletions(-)