Title: Access Brazilian National Treasury Open Data APIs
Description: Provides a unified interface to access open data from the
Brazilian National Treasury ('Tesouro Nacional') and related government
APIs. Covers six data sources: 'SICONFI'
<https://apidatalake.tesouro.gov.br/docs/siconfi/> for fiscal reports
('RREO', 'RGF', 'DCA', 'MSC') and entity information; 'CUSTOS'
<https://apidatalake.tesouro.gov.br/docs/custos/> for federal
government cost data; 'SADIPEM'
<https://apidatalake.tesouro.gov.br/docs/sadipem/> for public debt and
credit operations; 'Transferencias Constitucionais'
<https://apiapex.tesouro.gov.br/aria/v1/transferencias_constitucionais/docs>
for constitutional transfers to states and municipalities; 'SIORG'
<https://estruturaorganizacional.dados.gov.br> for federal
organizational structure; and 'SIOPE' ('FNDE'/'MEC') for education
spending data. Features automatic pagination, in-memory caching,
retry logic, and tidy output.
Author: Andre Leite [aut, cre],
Marcos Wasilew [aut],
Hugo Vasconcelos [aut],
Carlos Amorim [aut],
Diogo Bezerra [aut],
Tiago Pereira [aut],
Fernando Barbalho [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between tesouror versions 0.3.0 dated 2026-08-19 and 0.3.1 dated 2026-09-11
DESCRIPTION | 6 MD5 | 17 - NEWS.md | 21 + R/transferencias.R | 66 +++-- R/utils.R | 73 +++++ inst/WORDLIST | 325 ++++++++++++------------- inst/doc/transferencias_pernambuco.html | 4 man/get_tc_por_municipio.Rd | 25 + man/get_tc_por_municipio_detalhe.Rd | 10 tests/testthat/test-transferencias-municipio.R |only 10 files changed, 355 insertions(+), 192 deletions(-)
Title: Relative Importance Factor Analysis
Description: Tools for estimating, comparing, and visualizing Relative
Importance Factor (RIF) indices based on rank-frequency distributions
and discrete power-law models. The package provides reproducible
workflows for data preparation, model fitting, goodness-of-fit
assessment, bootstrap inference, and publication-ready outputs.
The implemented methodology is described in Llinas et al. (2026)
<doi:10.3390/math14060966>.
Author: Humberto J. Llinas M. [aut, cre],
Humberto J. Llinas S. [aut],
Javier A. De la Hoz M. [aut],
Brian J. Llinas M. [aut],
Jose J. Padilla [aut]
Maintainer: Humberto J. Llinas M. <lhumberto@uninorte.edu.co>
Diff between RIFanalysis versions 0.9.2 dated 2026-08-20 and 0.9.3 dated 2026-09-11
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 23 +++++++++++++++++++++++ R/rif_compute.R | 2 +- inst/doc/Vignette1.html | 2 +- inst/doc/Vignette2.html | 2 +- inst/doc/Vignette3.html | 2 +- man/rif_compute.Rd | 2 +- tests/testthat/test-rif-fit-powerlaw.R | 22 +++++++++++++++------- 9 files changed, 54 insertions(+), 23 deletions(-)
Title: Weighted Double Score Matching for Survey-Weighted Causal
Inference
Description: Implements weighted double score matching (WDSM) for estimating
population-level causal effects from complex survey data. Combines
propensity scores and prognostic scores with survey design weights for
matching, survey-weighted imputation within match sets, and Hajek
normalization to target the population average treatment effect (PATE) and
the population average treatment effect on the treated (PATT). Supports
both retrospective (treatment-dependent) and prospective
(treatment-independent) sampling designs. Uses propensity probabilities
and arm-specific prognostic scores for matching, with a complete quadratic
bias correction in each arm's double score. Provides linearization-based
multinomial replication variance estimates and centered normal Wald
confidence intervals, retaining the original matching reuse coefficients
without re-matching. Supplied scores can be held fixed for inference
conditional on those scores. This weight-only interface does not encode
survey strata, clusters, o [...truncated...]
Author: Yukang Zeng [aut, cre],
Guangyu Tong [aut],
Jiaqi Tong [aut],
Haidong Lu [aut],
Bhramar Mukherjee [aut],
Fan Li [aut]
Maintainer: Yukang Zeng <ykzeng2019@gmail.com>
Diff between wdsmatch versions 0.1.1 dated 2026-04-21 and 0.2.0 dated 2026-09-11
wdsmatch-0.1.1/wdsmatch/R/zzz.R |only wdsmatch-0.2.0/wdsmatch/DESCRIPTION | 25 - wdsmatch-0.2.0/wdsmatch/MD5 | 32 - wdsmatch-0.2.0/wdsmatch/NEWS.md |only wdsmatch-0.2.0/wdsmatch/R/bootstrap.R | 193 +-------- wdsmatch-0.2.0/wdsmatch/R/estimate_scores.R | 68 +-- wdsmatch-0.2.0/wdsmatch/R/matching.R | 167 +------ wdsmatch-0.2.0/wdsmatch/R/print.R | 8 wdsmatch-0.2.0/wdsmatch/R/utils.R | 171 +++++--- wdsmatch-0.2.0/wdsmatch/R/wdsm.R |only wdsmatch-0.2.0/wdsmatch/R/wdsmatchATE.R | 212 +++++----- wdsmatch-0.2.0/wdsmatch/R/wdsmatchATT.R | 102 +--- wdsmatch-0.2.0/wdsmatch/man/print.wdsmatch.Rd | 2 wdsmatch-0.2.0/wdsmatch/man/wdsmatchATE.Rd | 172 +++++--- wdsmatch-0.2.0/wdsmatch/man/wdsmatchATT.Rd | 126 +++-- wdsmatch-0.2.0/wdsmatch/tests/testthat/test-corrected-inference.R |only wdsmatch-0.2.0/wdsmatch/tests/testthat/test-internals.R | 126 +++-- wdsmatch-0.2.0/wdsmatch/tests/testthat/test-validation.R | 204 +++++++-- wdsmatch-0.2.0/wdsmatch/tests/testthat/test-wdsmatchATE.R | 3 19 files changed, 819 insertions(+), 792 deletions(-)
Title: Declarative Recipes for Staged Survey Weighting with
Recipe-Aware Replicate Variances
Description: Builds survey analysis weights by declaring the whole weighting
process as an ordered recipe of explicit adjustments, estimated in a
single call. Steps cover within-cluster selection, subsampling for
two-phase designs, nonresponse by weighting classes or
response-propensity models (optionally machine-learning, with
cross-fitting), calibration to known totals following Deville and
Sarndal (1992) <doi:10.2307/2290268>, optionally model-assisted,
non-probability samples by pseudo-weighting, mass imputation and
doubly robust estimators, and range-restricted trimming. Rotating and
pure panels add panel-selection probabilities, attrition, longitudinal
weights, gross flows and composite estimation. Variances come from a
recipe-aware bootstrap and jackknife that resample or delete primary
sampling units and re-apply the entire cascade on each replicate,
following Rao and Wu (1988) <doi:10.1080/01621459.1988.10478591>;
panel replicates are coordinated across waves, so the sample ove [...truncated...]
Author: Juan Pablo Ferreira [aut, cre, cph] ,
Andres Gutierrez [aut]
Maintainer: Juan Pablo Ferreira <juanpablo.ferreira@fcea.edu.uy>
Diff between weightflow versions 1.2.0 dated 2026-08-29 and 1.3.0 dated 2026-09-11
weightflow-1.2.0/weightflow/inst/doc/validation-against-survey.R |only weightflow-1.2.0/weightflow/inst/doc/validation-against-survey.Rmd |only weightflow-1.2.0/weightflow/inst/doc/validation-against-survey.html |only weightflow-1.2.0/weightflow/vignettes/validation-against-survey.Rmd |only weightflow-1.3.0/weightflow/DESCRIPTION | 42 weightflow-1.3.0/weightflow/MD5 | 248 ++-- weightflow-1.3.0/weightflow/NAMESPACE | 54 weightflow-1.3.0/weightflow/NEWS.md | 545 +++------ weightflow-1.3.0/weightflow/R/adjust-calibrate.R | 9 weightflow-1.3.0/weightflow/R/adjust-ml.R | 44 weightflow-1.3.0/weightflow/R/adjust-panel.R |only weightflow-1.3.0/weightflow/R/adjust-poststrata.R | 67 - weightflow-1.3.0/weightflow/R/adjust-pseudoweight.R | 4 weightflow-1.3.0/weightflow/R/adjust-solve.R | 30 weightflow-1.3.0/weightflow/R/adjust-trim.R | 179 ++- weightflow-1.3.0/weightflow/R/adjustments.R | 86 + weightflow-1.3.0/weightflow/R/data.R | 81 + weightflow-1.3.0/weightflow/R/disclosure-risk.R | 38 weightflow-1.3.0/weightflow/R/estimation-spec.R |only weightflow-1.3.0/weightflow/R/panel-design.R |only weightflow-1.3.0/weightflow/R/prep.R | 62 - weightflow-1.3.0/weightflow/R/r-indicators.R | 67 + weightflow-1.3.0/weightflow/R/recipe-io.R | 138 ++ weightflow-1.3.0/weightflow/R/report-assets.R | 189 +-- weightflow-1.3.0/weightflow/R/report-cards.R | 268 +++- weightflow-1.3.0/weightflow/R/report-css.R |only weightflow-1.3.0/weightflow/R/report-estimates.R |only weightflow-1.3.0/weightflow/R/report-helpers.R | 489 ++++++-- weightflow-1.3.0/weightflow/R/report-narrative.R | 483 +++++++- weightflow-1.3.0/weightflow/R/report-panel.R |only weightflow-1.3.0/weightflow/R/report.R | 185 ++- weightflow-1.3.0/weightflow/R/round-balanced.R |only weightflow-1.3.0/weightflow/R/sae.R | 26 weightflow-1.3.0/weightflow/R/spec-steps-calibrate.R | 62 - weightflow-1.3.0/weightflow/R/spec-steps-cascade.R | 14 weightflow-1.3.0/weightflow/R/spec-steps-cre.R |only weightflow-1.3.0/weightflow/R/spec-steps-final.R | 90 + weightflow-1.3.0/weightflow/R/spec-steps-panel.R |only weightflow-1.3.0/weightflow/R/spec-steps-subsample.R | 3 weightflow-1.3.0/weightflow/R/spec.R | 5 weightflow-1.3.0/weightflow/R/transitions.R |only weightflow-1.3.0/weightflow/R/variance-panel.R |only weightflow-1.3.0/weightflow/R/variance.R | 44 weightflow-1.3.0/weightflow/R/wave-chain.R |only weightflow-1.3.0/weightflow/README.md | 292 ++++ weightflow-1.3.0/weightflow/build/vignette.rds |binary weightflow-1.3.0/weightflow/data/panel_cl.rda |only weightflow-1.3.0/weightflow/data/panel_ine.rda |only weightflow-1.3.0/weightflow/data/panel_puro.rda |only weightflow-1.3.0/weightflow/data/panel_us.rda |only weightflow-1.3.0/weightflow/inst/CITATION | 23 weightflow-1.3.0/weightflow/inst/WORDLIST | 94 + weightflow-1.3.0/weightflow/inst/doc/advanced-methods.html | 2 weightflow-1.3.0/weightflow/inst/doc/composite-estimation.R |only weightflow-1.3.0/weightflow/inst/doc/composite-estimation.Rmd |only weightflow-1.3.0/weightflow/inst/doc/composite-estimation.html |only weightflow-1.3.0/weightflow/inst/doc/coordinated-replication.R |only weightflow-1.3.0/weightflow/inst/doc/coordinated-replication.Rmd |only weightflow-1.3.0/weightflow/inst/doc/coordinated-replication.html |only weightflow-1.3.0/weightflow/inst/doc/nonresponse-propensities.html | 6 weightflow-1.3.0/weightflow/inst/doc/panel-longitudinal.R |only weightflow-1.3.0/weightflow/inst/doc/panel-longitudinal.Rmd |only weightflow-1.3.0/weightflow/inst/doc/panel-longitudinal.html |only weightflow-1.3.0/weightflow/inst/doc/preparing-the-sample.html | 2 weightflow-1.3.0/weightflow/inst/doc/quality-report.html | 596 ++++++++-- weightflow-1.3.0/weightflow/inst/doc/quickstart.html | 2 weightflow-1.3.0/weightflow/inst/doc/rotating-panels.R |only weightflow-1.3.0/weightflow/inst/doc/rotating-panels.Rmd |only weightflow-1.3.0/weightflow/inst/doc/rotating-panels.html |only weightflow-1.3.0/weightflow/inst/doc/two-phase-sampling.Rmd | 12 weightflow-1.3.0/weightflow/inst/doc/two-phase-sampling.html | 15 weightflow-1.3.0/weightflow/inst/doc/validation.R |only weightflow-1.3.0/weightflow/inst/doc/validation.Rmd |only weightflow-1.3.0/weightflow/inst/doc/validation.html |only weightflow-1.3.0/weightflow/inst/doc/weightflow-in-production.html | 2 weightflow-1.3.0/weightflow/inst/doc/weightflow.html | 2 weightflow-1.3.0/weightflow/man/as_sae_input.Rd | 2 weightflow-1.3.0/weightflow/man/boot_flows.Rd |only weightflow-1.3.0/weightflow/man/boot_transition.Rd |only weightflow-1.3.0/weightflow/man/change_estimate.Rd |only weightflow-1.3.0/weightflow/man/collect_estimates.Rd |only weightflow-1.3.0/weightflow/man/collect_replicate_weights.Rd | 2 weightflow-1.3.0/weightflow/man/level_estimate.Rd |only weightflow-1.3.0/weightflow/man/panel_datasets.Rd |only weightflow-1.3.0/weightflow/man/panel_design.Rd |only weightflow-1.3.0/weightflow/man/panel_estimate.Rd |only weightflow-1.3.0/weightflow/man/panel_merge.Rd |only weightflow-1.3.0/weightflow/man/panel_pr.Rd |only weightflow-1.3.0/weightflow/man/read_recipe.Rd | 20 weightflow-1.3.0/weightflow/man/report_panel.Rd |only weightflow-1.3.0/weightflow/man/report_weighting.Rd | 2 weightflow-1.3.0/weightflow/man/step_assert.Rd | 1 weightflow-1.3.0/weightflow/man/step_attrition.Rd |only weightflow-1.3.0/weightflow/man/step_calibrate.Rd | 1 weightflow-1.3.0/weightflow/man/step_cre.Rd |only weightflow-1.3.0/weightflow/man/step_cross_sectional.Rd |only weightflow-1.3.0/weightflow/man/step_domain.Rd |only weightflow-1.3.0/weightflow/man/step_drop_ineligible.Rd | 9 weightflow-1.3.0/weightflow/man/step_model_calibration.Rd | 20 weightflow-1.3.0/weightflow/man/step_nonresponse.Rd | 3 weightflow-1.3.0/weightflow/man/step_nr_sensitivity.Rd | 1 weightflow-1.3.0/weightflow/man/step_panel_overlap.Rd |only weightflow-1.3.0/weightflow/man/step_pseudoweight.Rd | 3 weightflow-1.3.0/weightflow/man/step_rescale.Rd | 1 weightflow-1.3.0/weightflow/man/step_round.Rd | 75 - weightflow-1.3.0/weightflow/man/step_select_within.Rd | 1 weightflow-1.3.0/weightflow/man/step_subsample.Rd | 1 weightflow-1.3.0/weightflow/man/step_trim.Rd | 1 weightflow-1.3.0/weightflow/man/step_trim_calibrated.Rd | 17 weightflow-1.3.0/weightflow/man/step_trim_weights.Rd | 64 - weightflow-1.3.0/weightflow/man/step_unknown_eligibility.Rd | 1 weightflow-1.3.0/weightflow/man/transition_matrix.Rd |only weightflow-1.3.0/weightflow/man/two_phase_variance.Rd | 2 weightflow-1.3.0/weightflow/man/wave_bootstrap.Rd |only weightflow-1.3.0/weightflow/man/wave_carry.Rd |only weightflow-1.3.0/weightflow/man/wave_contrast.Rd |only weightflow-1.3.0/weightflow/man/wave_jackknife.Rd |only weightflow-1.3.0/weightflow/man/wave_step.Rd |only weightflow-1.3.0/weightflow/tests/testthat/_snaps/blindaje-bootstrap-firewall.md |only weightflow-1.3.0/weightflow/tests/testthat/_snaps/snapshot.md | 2 weightflow-1.3.0/weightflow/tests/testthat/test-attrition.R |only weightflow-1.3.0/weightflow/tests/testthat/test-audit-1.3.0-fixes.R |only weightflow-1.3.0/weightflow/tests/testthat/test-audit-2026-09.R |only weightflow-1.3.0/weightflow/tests/testthat/test-audit-ronda3-dsl.R |only weightflow-1.3.0/weightflow/tests/testthat/test-audit-ronda3-ml.R |only weightflow-1.3.0/weightflow/tests/testthat/test-audit-ronda3-publicado.R |only weightflow-1.3.0/weightflow/tests/testthat/test-audit-ronda3-reportes.R |only weightflow-1.3.0/weightflow/tests/testthat/test-audit-ronda3-rind.R |only weightflow-1.3.0/weightflow/tests/testthat/test-blindaje-africa-europa.R | 24 weightflow-1.3.0/weightflow/tests/testthat/test-blindaje-bootstrap-firewall.R |only weightflow-1.3.0/weightflow/tests/testthat/test-blindaje-datos-feos.R | 22 weightflow-1.3.0/weightflow/tests/testthat/test-blindaje-haven.R | 2 weightflow-1.3.0/weightflow/tests/testthat/test-blindaje-reporte-en.R | 35 weightflow-1.3.0/weightflow/tests/testthat/test-blindaje-upm-latam.R | 54 weightflow-1.3.0/weightflow/tests/testthat/test-blindaje-variance-edges.R | 20 weightflow-1.3.0/weightflow/tests/testthat/test-bugfixes-2026-08.R | 28 weightflow-1.3.0/weightflow/tests/testthat/test-cre-variance.R |only weightflow-1.3.0/weightflow/tests/testthat/test-cre.R |only weightflow-1.3.0/weightflow/tests/testthat/test-estimation-spec.R |only weightflow-1.3.0/weightflow/tests/testthat/test-longitudinal-weight.R |only weightflow-1.3.0/weightflow/tests/testthat/test-model-calibration-bounds.R |only weightflow-1.3.0/weightflow/tests/testthat/test-nr-weight-sum.R |only weightflow-1.3.0/weightflow/tests/testthat/test-oraculo-berger-priam.R |only weightflow-1.3.0/weightflow/tests/testthat/test-panel-datasets.R |only weightflow-1.3.0/weightflow/tests/testthat/test-panel-design.R |only weightflow-1.3.0/weightflow/tests/testthat/test-panel-estimate.R |only weightflow-1.3.0/weightflow/tests/testthat/test-panel-multiwave.R |only weightflow-1.3.0/weightflow/tests/testthat/test-panel-overlap.R |only weightflow-1.3.0/weightflow/tests/testthat/test-panel-scope.R |only weightflow-1.3.0/weightflow/tests/testthat/test-pattern-profile.R |only weightflow-1.3.0/weightflow/tests/testthat/test-propensity-weight-scale.R |only weightflow-1.3.0/weightflow/tests/testthat/test-recipe-io.R | 130 ++ weightflow-1.3.0/weightflow/tests/testthat/test-refit-steps.R |only weightflow-1.3.0/weightflow/tests/testthat/test-report-estimates.R |only weightflow-1.3.0/weightflow/tests/testthat/test-report-i18n.R |only weightflow-1.3.0/weightflow/tests/testthat/test-report-panel.R |only weightflow-1.3.0/weightflow/tests/testthat/test-subsample.R | 11 weightflow-1.3.0/weightflow/tests/testthat/test-transitions.R |only weightflow-1.3.0/weightflow/tests/testthat/test-trim-by-subgroup.R | 4 weightflow-1.3.0/weightflow/tests/testthat/test-trim-calibrated-modelcal.R |only weightflow-1.3.0/weightflow/tests/testthat/test-trim-weights-redistribute.R | 10 weightflow-1.3.0/weightflow/tests/testthat/test-unit-adjust-poststrata.R | 50 weightflow-1.3.0/weightflow/tests/testthat/test-unit-adjust-trim.R | 20 weightflow-1.3.0/weightflow/tests/testthat/test-unit-round-balanced.R |only weightflow-1.3.0/weightflow/tests/testthat/test-wave-bootstrap.R |only weightflow-1.3.0/weightflow/tests/testthat/test-wave-chain.R |only weightflow-1.3.0/weightflow/tests/testthat/test-wave-contrast.R |only weightflow-1.3.0/weightflow/tests/testthat/test-wave-jackknife.R |only weightflow-1.3.0/weightflow/vignettes/composite-estimation.Rmd |only weightflow-1.3.0/weightflow/vignettes/coordinated-replication.Rmd |only weightflow-1.3.0/weightflow/vignettes/panel-longitudinal.Rmd |only weightflow-1.3.0/weightflow/vignettes/rotating-panels.Rmd |only weightflow-1.3.0/weightflow/vignettes/two-phase-sampling.Rmd | 12 weightflow-1.3.0/weightflow/vignettes/validation.Rmd |only 174 files changed, 4062 insertions(+), 1189 deletions(-)
Title: Prediction Explanation with Dependence-Aware Shapley Values
Description: Complex machine learning models are often hard to interpret. However, in
many situations it is crucial to understand and explain why a model made a specific
prediction. Shapley values is the only method for such prediction explanation framework
with a solid theoretical foundation. Previously known methods for estimating the Shapley
values do, however, assume feature independence. This package implements methods which accounts for any feature
dependence, and thereby produces more accurate estimates of the true Shapley values.
An accompanying 'Python' wrapper ('pyshapr') is available through PyPI.
Author: Martin Jullum [cre, aut] ,
Lars Henry Berge Olsen [aut] ,
Annabelle Redelmeier [aut],
Jon Lachmann [aut] ,
Nikolai Sellereite [aut] ,
Anders Loeland [ctb],
Jens Christian Wahl [ctb],
Camilla Lingjaerde [ctb],
Norsk Regnesentral [cph, fnd]
Maintainer: Martin Jullum <Martin.Jullum@nr.no>
Diff between shapr versions 1.0.8 dated 2026-01-20 and 1.1.0 dated 2026-09-11
DESCRIPTION | 19 MD5 | 201 NAMESPACE | 84 NEWS.md | 41 R/approach.R | 5 R/approach_arf.R |only R/approach_copula.R | 5 R/approach_empirical.R | 7 R/approach_gaussian.R | 5 R/approach_regression_separate.R | 2 R/approach_vaeac.R | 19 R/approach_vaeac_torch_modules.R | 8 R/asymmetric_and_causal_Shapley.R | 4 R/cli.R | 13 R/compute_estimates.R | 44 R/explain.R | 75 R/explain_forecast.R | 9 R/finalize_explanation.R | 13 R/get_feature_specs.R | 3 R/get_results.R | 62 R/plot.R | 86 R/setup.R | 297 R/shapr-package.R | 4 R/summary.R | 6 R/zzz.R | 2 README.md | 137 build/vignette.rds |binary inst/REFERENCES.bib | 9 inst/doc/asymmetric_causal.Rmd | 818 - inst/doc/asymmetric_causal.html | 2149 ++-- inst/doc/general_usage.Rmd | 892 - inst/doc/general_usage.html | 3516 +++---- inst/doc/regression.Rmd | 2162 ++-- inst/doc/regression.html | 4492 ++++------ inst/doc/vaeac.Rmd | 388 inst/doc/vaeac.html | 970 -- man/cap_dense_batch_size.Rd |only man/cli_topline.Rd | 2 man/compute_vS_loss.Rd |only man/explain.Rd | 83 man/explain_forecast.Rd | 39 man/figures/README-sage_example-1.png |only man/get_extra_comp_args_default.Rd | 21 man/get_results.Rd | 27 man/log_loss.Rd |only man/mse_loss.Rd |only man/plot.shapr.Rd | 4 man/plot_SV_several_approaches.Rd | 4 man/prepare_data.Rd | 9 man/regression.train_model.Rd | 2 man/set_global_parameters.Rd |only man/setup.Rd | 23 man/setup_approach.Rd | 60 man/shapr-package.Rd | 3 man/vaeac_check_parameters.Rd | 2 man/vaeac_check_save_names.Rd | 2 man/vaeac_get_data_objects.Rd | 2 man/vaeac_get_extra_para_default.Rd | 4 man/vaeac_get_save_file_names.Rd | 2 man/vaeac_train_model.Rd | 2 tests/testthat/helper-lm.R | 11 tests/testthat/test-cli-output.R |only tests/testthat/test-fixes.R |only tests/testthat/test-iterative-setup.R | 25 tests/testthat/test-macos-smoke.R |only tests/testthat/test-plot.R | 1 tests/testthat/test-regression-output.R | 32 tests/testthat/test-regular-output.R | 58 tests/testthat/test-sage-output.R |only tests/testthat/test-sage-setup.R |only vignettes/asymmetric_causal.Rmd | 818 - vignettes/figure_asymmetric_causal/compare_plots-1.webp |binary vignettes/figure_asymmetric_causal/explanation_asym_cau_SV-1.webp |binary vignettes/figure_asymmetric_causal/explanation_asym_cau_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_asym_con_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_sym_cau_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_sym_con_SV-1.webp |binary vignettes/figure_asymmetric_causal/explanation_sym_con_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_sym_mar_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/group_cor-1.webp |binary vignettes/figure_asymmetric_causal/group_gaussian_plot_SV-1.webp |binary vignettes/figure_asymmetric_causal/group_gaussian_plot_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/n_coalitions_plot_SV-1.webp |binary vignettes/figure_asymmetric_causal/n_coalitions_plot_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/scatter_plots-1.webp |binary vignettes/figure_asymmetric_causal/setup_2-1.webp |binary vignettes/figure_asymmetric_causal/sym_and_asym_Shapley_values-1.webp |binary vignettes/figure_asymmetric_causal/two_dates_1-1.webp |binary vignettes/figure_asymmetric_causal/two_dates_2-1.webp |binary vignettes/figure_asymmetric_causal/two_dates_3-1.webp |binary vignettes/figure_general_usage/arf-1.webp |only vignettes/figure_general_usage/plot-waterfall-1.webp |binary vignettes/figure_general_usage/sage-1.webp |only vignettes/figure_general_usage/sage-2.webp |only vignettes/figure_regression/MSEv-sum-1.webp |binary vignettes/figure_regression/MSEv-sum-2-1.webp |binary vignettes/figure_regression/SV-sum-1.webp |binary vignettes/figure_regression/SV-sum-2.webp |binary vignettes/figure_regression/SV-sum-3.webp |binary vignettes/figure_regression/mixed-plot-1.webp |binary vignettes/figure_regression/mixed-plot-2-1.webp |binary vignettes/figure_regression/mixed-plot-3-1.webp |binary vignettes/figure_regression/mixed-plot-4-1.webp |binary vignettes/figure_regression/ppr-plot-1.webp |binary vignettes/figure_vaeac/continue-training-2.webp |binary vignettes/figure_vaeac/continue-training-5.webp |binary vignettes/general_usage.Rmd | 892 - vignettes/regression.Rmd | 2162 ++-- vignettes/vaeac.Rmd | 388 109 files changed, 9942 insertions(+), 11283 deletions(-)
Title: A Simple Way to Specify Symmetric, Block Diagonal Matrices
Description: Provides a simple mechanism to specify a symmetric block
diagonal matrices (often used for covariance matrices). This is based
on the domain specific language implemented in 'nlmixr2' but expanded
to create matrices in R generally instead of specifying parts of
matrices to estimate. It has expanded to include some matrix manipulation
functions that are generally useful for 'rxode2' and 'nlmixr2'.
Author: Matthew L. Fidler [aut, cre] ,
Mauricio Vargas Sepulveda [ctb] ,
Bill Denney [ctb]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between lotri versions 1.0.4 dated 2026-05-14 and 1.0.5 dated 2026-09-11
DESCRIPTION | 10 MD5 | 94 NAMESPACE | 13 NEWS.md | 361 ++ R/as.data.frame.R | 84 R/as.expression.R | 295 +- R/as.lotri.R | 172 + R/err.R | 2 R/lotri.R | 2467 ++++++++++++++++--- R/lotriMatInv.R | 71 R/lotriNearPD.R | 12 R/lotriPtrs.R | 3 R/print.R | 42 R/priors.R |only R/rcm.R | 13 R/same.R |only R/thetaEst.R | 144 - build/vignette.rds |binary inst/doc/lotri-motivation.html | 18 inst/doc/lotri-priors.R |only inst/doc/lotri-priors.Rmd |only inst/doc/lotri-priors.html |only inst/doc/lotri-same.R |only inst/doc/lotri-same.Rmd |only inst/doc/lotri-same.html |only man/lotri.Rd | 109 man/lotriBaseCondition.Rd |only man/lotriPriorDists.Rd |only src/lotriLstToMat.c | 26 src/lotriLstToMat.h | 138 + src/lotriProp.c | 6 src/matlist.c | 4 src/matlist.h | 6 src/nearPD.cpp | 23 src/rcm.cpp | 5 tests/testthat/_snaps/as.data.frame.md | 49 tests/testthat/_snaps/estimate-matrix-combination.md | 24 tests/testthat/test-as.data.frame.R | 6 tests/testthat/test-as.expression.R | 31 tests/testthat/test-as.lotri.R | 8 tests/testthat/test-attr-exact.R |only tests/testthat/test-estimate-matrix-combination.R | 23 tests/testthat/test-fixed-combine.R | 14 tests/testthat/test-fixed.R | 8 tests/testthat/test-labels-conditions.R |only tests/testthat/test-lotri-matrix.R | 174 - tests/testthat/test-lotri.R | 14 tests/testthat/test-lotriMat.R | 26 tests/testthat/test-lotriSep.R | 6 tests/testthat/test-nearPD.R | 16 tests/testthat/test-priors-offdiag.R |only tests/testthat/test-priors.R |only tests/testthat/test-same-api.R |only tests/testthat/test-same.R |only tests/testthat/test-theta-lhs-as.expression.R | 30 vignettes/lotri-priors.Rmd |only vignettes/lotri-same.Rmd |only 57 files changed, 3828 insertions(+), 719 deletions(-)
Title: G-means Clustering
Description: Gaussian-means (G-means) clustering is a clustering algorithm
that extends the k-means algorithm by automatically determining the
number of clusters.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between gmeans versions 0.1.0 dated 2026-08-05 and 0.2.0 dated 2026-09-11
gmeans-0.1.0/gmeans/inst/doc/mlr3-integration.R |only gmeans-0.1.0/gmeans/inst/doc/mlr3-integration.Rmd |only gmeans-0.1.0/gmeans/inst/doc/mlr3-integration.html |only gmeans-0.1.0/gmeans/vignettes/mlr3-integration.Rmd |only gmeans-0.2.0/gmeans/DESCRIPTION | 13 +--- gmeans-0.2.0/gmeans/MD5 | 32 ++++------ gmeans-0.2.0/gmeans/NEWS.md | 12 +++ gmeans-0.2.0/gmeans/R/assertions.R | 2 gmeans-0.2.0/gmeans/R/gmeans.R | 51 ++++++++++++---- gmeans-0.2.0/gmeans/README.md | 9 ++ gmeans-0.2.0/gmeans/build/vignette.rds |binary gmeans-0.2.0/gmeans/inst/doc/introduction.R | 20 +++--- gmeans-0.2.0/gmeans/inst/doc/introduction.Rmd | 20 +++--- gmeans-0.2.0/gmeans/inst/doc/introduction.html | 32 +++++----- gmeans-0.2.0/gmeans/man/compute_wss.Rd | 3 gmeans-0.2.0/gmeans/man/gmeans.Rd | 12 ++- gmeans-0.2.0/gmeans/man/predict.gmeans.Rd | 5 - gmeans-0.2.0/gmeans/tests/testthat/test-gmeans.R | 65 +++++++++++++++++++-- gmeans-0.2.0/gmeans/vignettes/introduction.Rmd | 20 +++--- 19 files changed, 205 insertions(+), 91 deletions(-)
Title: Access EPA 'ECHO' Data
Description: An R interface to United States Environmental
Protection Agency (EPA) Environmental Compliance
History Online ('ECHO') Application Program Interface
(API). 'ECHO' provides information about EPA permitted
facilities, discharges, and other reporting info
associated with permitted entities. Data are obtained
from <https://echo.epa.gov/>.
Author: Michael Schramm [aut, cre, cph]
Maintainer: Michael Schramm <mpschramm@gmail.com>
Diff between echor versions 0.1.9 dated 2023-06-22 and 0.1.10 dated 2026-09-11
echor-0.1.10/echor/DESCRIPTION | 16 echor-0.1.10/echor/MD5 | 85 echor-0.1.10/echor/NAMESPACE | 33 echor-0.1.10/echor/NEWS.md | 196 echor-0.1.10/echor/R/air.R | 94 echor-0.1.10/echor/R/echoGetReports.R | 10 echor-0.1.10/echor/R/nncr.R |only echor-0.1.10/echor/R/sdw.R | 48 echor-0.1.10/echor/R/utils.R | 46 echor-0.1.10/echor/R/water.R | 100 echor-0.1.10/echor/README.md | 227 echor-0.1.10/echor/man/echoAirGetFacilityInfo.Rd | 84 echor-0.1.10/echor/man/echoGetReports.Rd | 46 echor-0.1.10/echor/man/echoNNCRGetQuarters.Rd |only echor-0.1.10/echor/man/echoNNCRGetReport.Rd |only echor-0.1.10/echor/man/echoNNCRGetSearch.Rd |only echor-0.1.10/echor/man/echoNNCRGetViolations.Rd |only echor-0.1.10/echor/man/echoWaterGetFacilityInfo.Rd | 20 echor-0.1.10/echor/man/figures/README-example3-1.png |binary echor-0.1.10/echor/man/figures/README-unnamed-chunk-2-1.png |binary echor-0.1.10/echor/tests/testthat/api/air_rest_services.get_download-7d79e8.csv |only echor-0.1.10/echor/tests/testthat/api/air_rest_services.get_download-d0d67e.csv |only echor-0.1.10/echor/tests/testthat/api/air_rest_services.get_facilities-2c1991.json |only echor-0.1.10/echor/tests/testthat/api/air_rest_services.get_facilities-fa0469.json |only echor-0.1.10/echor/tests/testthat/api/air_rest_services.get_geojson-1a1a48.json |only echor-0.1.10/echor/tests/testthat/api/air_rest_services.get_geojson-561852.json |only echor-0.1.10/echor/tests/testthat/api/air_rest_services.metadata-a4f118.json | 1478 +---- echor-0.1.10/echor/tests/testthat/api/caa_poll_rpt_rest_services.get_caapr-75a2fe.json | 880 +-- echor-0.1.10/echor/tests/testthat/api/cwa_rest_services.get_download-06fc20.csv |only echor-0.1.10/echor/tests/testthat/api/cwa_rest_services.get_download-15ac27.csv |only echor-0.1.10/echor/tests/testthat/api/cwa_rest_services.get_download-790899.csv |only echor-0.1.10/echor/tests/testthat/api/cwa_rest_services.get_download-c60a28.csv |only echor-0.1.10/echor/tests/testthat/api/cwa_rest_services.get_facilities-055e07.json |only echor-0.1.10/echor/tests/testthat/api/cwa_rest_services.get_facilities-2b2b6e.json |only echor-0.1.10/echor/tests/testthat/api/cwa_rest_services.get_facilities-7240e7.json |only echor-0.1.10/echor/tests/testthat/api/cwa_rest_services.get_facilities-cc8093.json |only echor-0.1.10/echor/tests/testthat/api/cwa_rest_services.get_geojson-69732b.json |only echor-0.1.10/echor/tests/testthat/api/cwa_rest_services.get_geojson-762b5f.json |only echor-0.1.10/echor/tests/testthat/api/cwa_rest_services.metadata-a4f118.json | 2702 +++------- echor-0.1.10/echor/tests/testthat/api/eff_rest_services.download_effluent_chart-81e3b7.csv | 654 -- echor-0.1.10/echor/tests/testthat/api/nncr_services |only echor-0.1.10/echor/tests/testthat/api/sdw_rest_services.get_download-7dc1b8.csv |only echor-0.1.10/echor/tests/testthat/api/sdw_rest_services.get_download-7f82cf.csv |only echor-0.1.10/echor/tests/testthat/api/sdw_rest_services.get_systems-44eac4.json |only echor-0.1.10/echor/tests/testthat/api/sdw_rest_services.metadata-a4f118.json | 42 echor-0.1.10/echor/tests/testthat/test-expected_errors.R | 9 echor-0.1.10/echor/tests/testthat/test-expected_objects.R | 70 echor-0.1.9/echor/tests/testthat/api/air_rest_services.get_download-1c1064.csv |only echor-0.1.9/echor/tests/testthat/api/air_rest_services.get_facility_info-96582d.json |only echor-0.1.9/echor/tests/testthat/api/air_rest_services.get_facility_info-fdcbbc.json |only echor-0.1.9/echor/tests/testthat/api/air_rest_services.get_geojson-ff3b70.json |only echor-0.1.9/echor/tests/testthat/api/cwa_rest_services.get_download-7c6f23.csv |only echor-0.1.9/echor/tests/testthat/api/cwa_rest_services.get_download-b2c8cc.csv |only echor-0.1.9/echor/tests/testthat/api/cwa_rest_services.get_facility_info-3c5df1.json |only echor-0.1.9/echor/tests/testthat/api/cwa_rest_services.get_facility_info-3ebb0f.json |only echor-0.1.9/echor/tests/testthat/api/cwa_rest_services.get_facility_info-5daf35.json |only echor-0.1.9/echor/tests/testthat/api/cwa_rest_services.get_geojson-6fc0a8.json |only echor-0.1.9/echor/tests/testthat/api/sdw_rest_services.get_download-6659b8.csv |only echor-0.1.9/echor/tests/testthat/api/sdw_rest_services.get_systems-d3eb10.json |only echor-0.1.9/echor/tests/testthat/ofmpub.epa.gov |only 60 files changed, 2537 insertions(+), 4303 deletions(-)
Title: Diffs for R Objects
Description: Generate a colorized diff of two R objects for an intuitive
visualization of their differences.
Author: Brodie Gaslam [aut, cre],
Michael B. Allen [ctb, cph]
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between diffobj versions 0.3.8 dated 2026-07-17 and 0.3.9 dated 2026-09-11
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ tests/_helper/commonobjects.R | 6 ++---- tests/_helper/objs/diffObj/400.rds |binary tests/_helper/objs/diffStr/100.rds |binary tests/_helper/objs/diffStr/500.rds |binary tests/_helper/objs/diffStr/550.rds |binary 8 files changed, 16 insertions(+), 14 deletions(-)
Title: Create Color-Coded Choropleth Maps in R
Description: Easily create color-coded (choropleth) maps in R. No knowledge of
cartography or shapefiles needed; go directly from your geographically
identified data to a highly customizable map with a single line of code!
Supported geographies: U.S. states, counties, census tracts, and zip codes,
world countries and sub-country regions (e.g., provinces, prefectures, etc.).
Author: Ari Lamstein [aut],
Zhaochen He [ctb, cre],
Brian Johnson [ctb],
Trulia, Inc. [cph]
Maintainer: Zhaochen He <zhaochen.he@cnu.edu>
This is a re-admission after prior archival of version 5.0.1 dated 2025-10-18
Diff between choroplethr versions 5.0.1 dated 2025-10-18 and 5.0.2 dated 2026-09-11
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 +++++ R/acs.R | 15 --------------- R/choropleth.R | 3 ++- man/county_choropleth_acs.Rd | 8 -------- man/state_choropleth_acs.Rd | 9 --------- 7 files changed, 16 insertions(+), 42 deletions(-)
Title: Utilities for Certara's Nonlinear Mixed-Effects Modeling Engine
Description: Interface to Certara's Nonlinear Mixed-Effects (NLME) modeling
engine ('NLME-Engine') for pharmacokinetic and pharmacodynamic (PK/PD)
modeling and simulation. Provides access to the Maximum Likelihood
estimation algorithms available in the 'Phoenix' NLME platform for
population, individual, and pooled analyses using parametric methods.
Includes utilities for setting up NLME installations and
parallel settings, running estimation, bootstrap, and covariate search
workflows, and updating model files from engine output. Jobs can be
executed locally or across high-performance computing resources,
including Linux Sun Grid Engine (SGE) and Simple Linux Utility for
Resource Management (SLURM) grids as well as multicore Linux and
Windows hosts.
Author: Soltanshahi Fred [aut],
Michael Tomashevskiy [aut],
James Craig [aut, cre],
Shuhua Hu [ctb],
Certara USA, Inc. [cph, fnd]
Maintainer: James Craig <james.craig@certara.com>
Diff between Certara.NLME8 versions 3.0.2 dated 2025-08-20 and 3.2.0 dated 2026-09-11
Certara.NLME8-3.0.2/Certara.NLME8/R/generateInitialScenarios.R |only Certara.NLME8-3.0.2/Certara.NLME8/R/generateSelCovarSearchArgsLine.R |only Certara.NLME8-3.0.2/Certara.NLME8/R/getBestResults.R |only Certara.NLME8-3.2.0/Certara.NLME8/DESCRIPTION | 33 Certara.NLME8-3.2.0/Certara.NLME8/MD5 | 101 Certara.NLME8-3.2.0/Certara.NLME8/NAMESPACE | 74 Certara.NLME8-3.2.0/Certara.NLME8/R/CovariateResultReader.R |only Certara.NLME8-3.2.0/Certara.NLME8/R/CovariateScenarioUtils.R |only Certara.NLME8-3.2.0/Certara.NLME8/R/CovariateSearchConfig.R |only Certara.NLME8-3.2.0/Certara.NLME8/R/CovariateSearchLogic.R |only Certara.NLME8-3.2.0/Certara.NLME8/R/OLDrunNLMEInitialRun.R | 165 Certara.NLME8-3.2.0/Certara.NLME8/R/UpdateMDLfrom_dmptxt.R | 487 +- Certara.NLME8-3.2.0/Certara.NLME8/R/UpdateProgressMessages.R | 570 +- Certara.NLME8-3.2.0/Certara.NLME8/R/bootstrapShrinkage.R |only Certara.NLME8-3.2.0/Certara.NLME8/R/collateTables.R | 418 +- Certara.NLME8-3.2.0/Certara.NLME8/R/collectJobErrors.R | 264 - Certara.NLME8-3.2.0/Certara.NLME8/R/collectJobResults.R | 203 - Certara.NLME8-3.2.0/Certara.NLME8/R/collectJobResultsGeneric.R | 421 +- Certara.NLME8-3.2.0/Certara.NLME8/R/copy_filesWarnLong.R | 130 Certara.NLME8-3.2.0/Certara.NLME8/R/generateEtaSpreadsheet.R | 457 +- Certara.NLME8-3.2.0/Certara.NLME8/R/generateGenericTable.R | 453 +- Certara.NLME8-3.2.0/Certara.NLME8/R/generateJobResults.R | 131 Certara.NLME8-3.2.0/Certara.NLME8/R/generateNLMEScriptAndRun.R | 561 +- Certara.NLME8-3.2.0/Certara.NLME8/R/generateOmegaEtas.R | 538 +- Certara.NLME8-3.2.0/Certara.NLME8/R/generateStatusWindow.R | 339 - Certara.NLME8-3.2.0/Certara.NLME8/R/get_bluptable.R | 103 Certara.NLME8-3.2.0/Certara.NLME8/R/globals.R | 54 Certara.NLME8-3.2.0/Certara.NLME8/R/gridSubmission.R |only Certara.NLME8-3.2.0/Certara.NLME8/R/mpiBatchPlanning.R |only Certara.NLME8-3.2.0/Certara.NLME8/R/parallel_utl.r | 2009 ++++------ Certara.NLME8-3.2.0/Certara.NLME8/R/parseShrinkageLines.R |only Certara.NLME8-3.2.0/Certara.NLME8/R/performBootstrap.R | 627 +-- Certara.NLME8-3.2.0/Certara.NLME8/R/performParallelNLMERun.R | 609 +-- Certara.NLME8-3.2.0/Certara.NLME8/R/performStepwiseCovarSearch.R | 1224 +++--- Certara.NLME8-3.2.0/Certara.NLME8/R/readProgressDotTxt.R | 73 Certara.NLME8-3.2.0/Certara.NLME8/R/runNLMEInitialRun.R | 382 - Certara.NLME8-3.2.0/Certara.NLME8/R/runNLMESample.R | 593 +- Certara.NLME8-3.2.0/Certara.NLME8/R/scmArchive.R |only Certara.NLME8-3.2.0/Certara.NLME8/R/scmDmpNormalize.R |only Certara.NLME8-3.2.0/Certara.NLME8/R/startGenericGridJob.R | 862 ++-- Certara.NLME8-3.2.0/Certara.NLME8/R/summarizeBootstrap.R | 859 ++-- Certara.NLME8-3.2.0/Certara.NLME8/R/tdl5_utils.R |only Certara.NLME8-3.2.0/Certara.NLME8/inst/extdata/performStepwiseCovarSearch_enable421 |only Certara.NLME8-3.2.0/Certara.NLME8/inst/extdata/performVPC/predout.expected | 450 +- Certara.NLME8-3.2.0/Certara.NLME8/man/dot-planMpiBatch.Rd |only Certara.NLME8-3.2.0/Certara.NLME8/man/generateTDL5ModelInfo.Rd |only Certara.NLME8-3.2.0/Certara.NLME8/man/performStepwiseCovarSearch.Rd | 70 Certara.NLME8-3.2.0/Certara.NLME8/man/readProgressDotTxt.Rd |only Certara.NLME8-3.2.0/Certara.NLME8/man/renderTDL5Override.Rd |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/fixtures |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/helper-bootstrap.R |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_bootstrap_summary_outputs.r |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_collectJobResults.r |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_gridSubmission.r |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_mpiBatchPlanning.r |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_scm_archive_dmp_prune.r |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_scm_archive_mdl.r |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_scm_update_initials.r |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_shotgun_scm_archive.r |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_startGenericGridJob_expiry.R |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_stepwise.r | 113 Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_stepwiseCompileCache.r |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_stepwise_enable421.r |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_stepwise_scm_archive.r |only Certara.NLME8-3.2.0/Certara.NLME8/tests/testthat/test_tdl5_resolve.r |only 65 files changed, 6999 insertions(+), 6374 deletions(-)
Title: Access Data from Brazilian Central Bank: IFdata, Active
Institutions, Balance Sheets and Normative Acts
Description: Provides functions to query, retrieve, and tidy economic and
financial data from Brazilian Central Bank web services for use in R
analyses and workflows. Active institutions information, balance sheets and normative acts.
Author: Ricardo Theodoro [aut, cre]
Maintainer: Ricardo Theodoro <rtheodoro@usp.br>
Diff between bacenR versions 0.4.4 dated 2026-07-03 and 0.5.0 dated 2026-09-11
DESCRIPTION | 8 +-- MD5 | 24 ++++----- NAMESPACE | 84 +++++++++++++++++++-------------- NEWS.md | 4 + R/get_institutions.R | 74 ++++++++++++++++------------- R/tidy_institutions.R | 7 +- README.md | 9 +-- inst/doc/bacenR.Rmd | 18 +++---- inst/doc/bacenR.html | 20 ++++--- man/get_institutions.Rd | 34 +++++++------ man/tidy_institutions.Rd | 7 +- tests/testthat/test-get_institutions.R | 13 +++-- vignettes/bacenR.Rmd | 18 +++---- 13 files changed, 184 insertions(+), 136 deletions(-)
Title: Gaussian Graphical Models with Latent Clustering Structure
Description: Implements the Normal-Block model, a Gaussian graphical model
with a latent clustering structure for the multivariate analysis
of continuous data. The model clusters variables and, building
on the graphical lasso, infers a network of statistical
dependencies between clusters rather than between individual
variables, for known or unknown clusterings, with an optional
zero-inflation extension for data with an excess of exact
zeros. A complementary family clusters variables by their
regression response to covariates rather than by their
covariance, sharing one profile per cluster. See Tous & Chiquet (2026)
<doi:10.1016/j.csda.2026.108347> for the model itself and its
variational expectation-maximization estimation procedure.
Author: Jeanne Tous [aut],
Nestor Ngalala Manguitini [ctb],
Julien Chiquet [aut, cre]
Maintainer: Julien Chiquet <julien.chiquet@inrae.fr>
Diff between normalblockr versions 0.2.1 dated 2026-09-03 and 0.3.0 dated 2026-09-11
normalblockr-0.2.1/normalblockr/R/NormalBlockVarBase-S3methods.R |only normalblockr-0.2.1/normalblockr/R/NormalBlockVarCollection-S3methods.R |only normalblockr-0.2.1/normalblockr/R/NormalBlockVarCollection.R |only normalblockr-0.2.1/normalblockr/R/SelectionNClusters.R |only normalblockr-0.2.1/normalblockr/man/BIC.NormalBlockVarBase.Rd |only normalblockr-0.2.1/normalblockr/man/BIC.NormalBlockVarCollection.Rd |only normalblockr-0.2.1/normalblockr/man/NormalBlockVarCollection.Rd |only normalblockr-0.2.1/normalblockr/man/SelectionNClusters.Rd |only normalblockr-0.2.1/normalblockr/man/coef.NormalBlockVarBase.Rd |only normalblockr-0.2.1/normalblockr/man/fitted.NormalBlockVarBase.Rd |only normalblockr-0.2.1/normalblockr/man/logLik.NormalBlockVarBase.Rd |only normalblockr-0.2.1/normalblockr/man/logLik.NormalBlockVarCollection.Rd |only normalblockr-0.2.1/normalblockr/man/plot.NormalBlockVarBase.Rd |only normalblockr-0.2.1/normalblockr/man/predict.NormalBlockVarBase.Rd |only normalblockr-0.2.1/normalblockr/man/print.NormalBlockVarBase.Rd |only normalblockr-0.2.1/normalblockr/man/print.NormalBlockVarCollection.Rd |only normalblockr-0.2.1/normalblockr/man/print.summary.NormalBlockVarBase.Rd |only normalblockr-0.2.1/normalblockr/man/print.summary.NormalBlockVarCollection.Rd |only normalblockr-0.2.1/normalblockr/man/sigma.NormalBlockVarBase.Rd |only normalblockr-0.2.1/normalblockr/man/summary.NormalBlockVarBase.Rd |only normalblockr-0.2.1/normalblockr/man/summary.NormalBlockVarCollection.Rd |only normalblockr-0.2.1/normalblockr/tests/testthat/test-clustering-approx.R |only normalblockr-0.2.1/normalblockr/tests/testthat/test-initialization.R |only normalblockr-0.2.1/normalblockr/tests/testthat/test-sbm-clustering-path.R |only normalblockr-0.2.1/normalblockr/tests/testthat/test-selection-n-clusters.R |only normalblockr-0.3.0/normalblockr/DESCRIPTION | 22 normalblockr-0.3.0/normalblockr/MD5 | 238 ++- normalblockr-0.3.0/normalblockr/NAMESPACE | 44 normalblockr-0.3.0/normalblockr/NEWS.md | 71 + normalblockr-0.3.0/normalblockr/R/NormalBlockBase-S3methods.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockBase.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockCollection-S3methods.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockCollection.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockCollectionClusters.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockCollectionClustersSparsity.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockCollectionSparsity.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockData.R | 117 + normalblockr-0.3.0/normalblockr/R/NormalBlockMeanBase.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockMeanCollectionClusters.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockMeanCollectionClustersSparsity.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockMeanCollectionSparsity.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockMeanKnownClusters.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockMeanUnknownClusters.R |only normalblockr-0.3.0/normalblockr/R/NormalBlockVarBase.R | 644 ---------- normalblockr-0.3.0/normalblockr/R/NormalBlockVarCollectionClusters.R | 132 -- normalblockr-0.3.0/normalblockr/R/NormalBlockVarCollectionClustersSparsity.R | 80 - normalblockr-0.3.0/normalblockr/R/NormalBlockVarCollectionSparsity.R | 74 - normalblockr-0.3.0/normalblockr/R/NormalBlockVarKnownClusters.R | 24 normalblockr-0.3.0/normalblockr/R/NormalBlockVarUnknownClusters.R | 25 normalblockr-0.3.0/normalblockr/R/RcppExports.R | 153 ++ normalblockr-0.3.0/normalblockr/R/ZINormalBlockMeanKnownClusters.R |only normalblockr-0.3.0/normalblockr/R/ZINormalBlockMeanUnknownClusters.R |only normalblockr-0.3.0/normalblockr/R/ZINormalBlockVarKnownClusters.R | 27 normalblockr-0.3.0/normalblockr/R/ZINormalBlockVarUnknownClusters.R | 27 normalblockr-0.3.0/normalblockr/R/normal_block.R | 104 + normalblockr-0.3.0/normalblockr/R/normal_block_data_generation.R | 104 + normalblockr-0.3.0/normalblockr/R/normal_block_sequential.R |only normalblockr-0.3.0/normalblockr/R/normalblockr-package.R | 2 normalblockr-0.3.0/normalblockr/R/utils.R | 147 ++ normalblockr-0.3.0/normalblockr/README.md | 94 + normalblockr-0.3.0/normalblockr/build/vignette.rds |binary normalblockr-0.3.0/normalblockr/inst/WORDLIST | 37 normalblockr-0.3.0/normalblockr/inst/doc/breast-cancer-proteomics.Rmd | 22 normalblockr-0.3.0/normalblockr/inst/doc/breast-cancer-proteomics.html | 89 - normalblockr-0.3.0/normalblockr/inst/doc/mean-block-breast-cancer.R |only normalblockr-0.3.0/normalblockr/inst/doc/mean-block-breast-cancer.Rmd |only normalblockr-0.3.0/normalblockr/inst/doc/mean-block-breast-cancer.html |only normalblockr-0.3.0/normalblockr/inst/doc/normal-block.R | 6 normalblockr-0.3.0/normalblockr/inst/doc/normal-block.Rmd | 18 normalblockr-0.3.0/normalblockr/inst/doc/normal-block.html | 54 normalblockr-0.3.0/normalblockr/inst/doc/zero-inflated-normal-block.Rmd | 12 normalblockr-0.3.0/normalblockr/inst/doc/zero-inflated-normal-block.html | 49 normalblockr-0.3.0/normalblockr/man/BIC.NormalBlockBase.Rd |only normalblockr-0.3.0/normalblockr/man/BIC.NormalBlockCollection.Rd |only normalblockr-0.3.0/normalblockr/man/NB_control.Rd | 30 normalblockr-0.3.0/normalblockr/man/NormalBlockBase.Rd |only normalblockr-0.3.0/normalblockr/man/NormalBlockCollection.Rd |only normalblockr-0.3.0/normalblockr/man/NormalBlockCollectionClusters.Rd |only normalblockr-0.3.0/normalblockr/man/NormalBlockCollectionClustersSparsity.Rd |only normalblockr-0.3.0/normalblockr/man/NormalBlockCollectionSparsity.Rd |only normalblockr-0.3.0/normalblockr/man/NormalBlockData.Rd | 77 + normalblockr-0.3.0/normalblockr/man/NormalBlockMeanBase.Rd |only normalblockr-0.3.0/normalblockr/man/NormalBlockMeanCollectionClusters.Rd |only normalblockr-0.3.0/normalblockr/man/NormalBlockMeanCollectionClustersSparsity.Rd |only normalblockr-0.3.0/normalblockr/man/NormalBlockMeanCollectionSparsity.Rd 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normalblockr-0.3.0/normalblockr/src/normal_block_mean_unknown_clusters.h |only normalblockr-0.3.0/normalblockr/src/normal_block_var_base.h | 146 -- normalblockr-0.3.0/normalblockr/src/normal_block_var_known_clusters.h | 23 normalblockr-0.3.0/normalblockr/src/normal_block_var_unknown_clusters.h | 20 normalblockr-0.3.0/normalblockr/src/omega_estimation.h | 60 normalblockr-0.3.0/normalblockr/src/zi_closed_form_solvers.h | 37 normalblockr-0.3.0/normalblockr/src/zi_normal_block_mean_base.h |only normalblockr-0.3.0/normalblockr/src/zi_normal_block_mean_known_clusters.h |only normalblockr-0.3.0/normalblockr/src/zi_normal_block_mean_types.h |only normalblockr-0.3.0/normalblockr/src/zi_normal_block_mean_unknown_clusters.h |only normalblockr-0.3.0/normalblockr/src/zi_normal_block_var_known_clusters.h | 30 normalblockr-0.3.0/normalblockr/src/zi_normal_block_var_unknown_clusters.h | 24 normalblockr-0.3.0/normalblockr/tests/testthat/test-NormalBlockMeanCollectionSparsity.R |only normalblockr-0.3.0/normalblockr/tests/testthat/test-NormalBlockMeanKnownClusters.R |only normalblockr-0.3.0/normalblockr/tests/testthat/test-NormalBlockMeanUnknownClusters.R |only normalblockr-0.3.0/normalblockr/tests/testthat/test-NormalBlockVarCollectionClusters.R | 8 normalblockr-0.3.0/normalblockr/tests/testthat/test-NormalBlockVarCollectionClustersSparsity.R | 8 normalblockr-0.3.0/normalblockr/tests/testthat/test-NormalBlockVarCollectionSparsity.R | 8 normalblockr-0.3.0/normalblockr/tests/testthat/test-NormalBlockVarKnownClusters.R | 9 normalblockr-0.3.0/normalblockr/tests/testthat/test-NormalBlockVarUnknownClusters.R | 9 normalblockr-0.3.0/normalblockr/tests/testthat/test-S3-methods.R | 12 normalblockr-0.3.0/normalblockr/tests/testthat/test-ZINormalBlockMeanKnownClusters.R |only normalblockr-0.3.0/normalblockr/tests/testthat/test-ZINormalBlockMeanUnknownClusters.R |only normalblockr-0.3.0/normalblockr/tests/testthat/test-ZINormalBlockVarKnownClusters.R | 5 normalblockr-0.3.0/normalblockr/tests/testthat/test-ZINormalBlockVarUnknownClusters.R | 12 normalblockr-0.3.0/normalblockr/tests/testthat/test-clustering-heuristics.R | 96 + normalblockr-0.3.0/normalblockr/tests/testthat/test-covar-ZINormalBlockVarKnownClusters.R | 5 normalblockr-0.3.0/normalblockr/tests/testthat/test-covar-ZINormalBlockVarUnknownClusters.R | 5 normalblockr-0.3.0/normalblockr/tests/testthat/test-cpp-normal-block-mean.R |only normalblockr-0.3.0/normalblockr/tests/testthat/test-cpp-normal-block.R | 34 normalblockr-0.3.0/normalblockr/tests/testthat/test-cpp-zi-normal-block.R | 36 normalblockr-0.3.0/normalblockr/tests/testthat/test-graphical-lasso.R |only normalblockr-0.3.0/normalblockr/tests/testthat/test-normal_block_sequential.R |only normalblockr-0.3.0/normalblockr/tests/testthat/test-shared-initialization.R |only normalblockr-0.3.0/normalblockr/tests/testthat/test-split-merge.R |only normalblockr-0.3.0/normalblockr/tests/testthat/test-zero-inflation-component.R |only normalblockr-0.3.0/normalblockr/tests/testthat/testdata/testdata_normal_mean_block.RDS |only normalblockr-0.3.0/normalblockr/vignettes/breast-cancer-proteomics.Rmd | 22 normalblockr-0.3.0/normalblockr/vignettes/mean-block-breast-cancer.Rmd |only normalblockr-0.3.0/normalblockr/vignettes/normal-block.Rmd | 18 normalblockr-0.3.0/normalblockr/vignettes/references.bib | 33 normalblockr-0.3.0/normalblockr/vignettes/zero-inflated-normal-block.Rmd | 12 169 files changed, 2257 insertions(+), 2335 deletions(-)
Title: Influence Measures and Diagnostic Plots for Multivariate Linear
Models
Description: Computes regression deletion diagnostics for multivariate linear models and provides some associated
diagnostic plots. The diagnostic measures include hat-values (leverages), generalized Cook's distance, and
generalized squared 'studentized' residuals. Several types of plots to detect influential observations are
provided.
Author: Michael Friendly [aut, cre]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between mvinfluence versions 0.9.2 dated 2025-07-23 and 0.9.4 dated 2026-09-11
DESCRIPTION | 10 - MD5 | 28 +-- NAMESPACE | 58 ++++--- NEWS.md | 20 ++ R/Jfuns.R | 1 R/mlm.influence.R | 13 + R/print.inflmlm.R | 2 build/vignette.rds |binary inst/doc/uni-vs-multi.R | 26 +++ inst/doc/uni-vs-multi.Rmd | 87 +++++++++++ inst/doc/uni-vs-multi.html | 204 ++++++++++++++++++++------ man/Jfuns.Rd | 5 man/mlm.influence.Rd | 2 man/mvinfluence-package.Rd | 351 ++++++++++++++++++++++----------------------- vignettes/uni-vs-multi.Rmd | 87 +++++++++++ 15 files changed, 623 insertions(+), 271 deletions(-)
Title: Generalized Linear Latent Variable Models
Description: Analysis of multivariate data using generalized linear latent variable models (gllvm).
Estimation is performed using either the Laplace method, variational approximations, or extended variational approximations, implemented via TMB (Kristensen et al. (2016), <doi:10.18637/jss.v070.i05>).
Author: Jenni Niku [aut, cre],
Wesley Brooks [aut],
Riki Herliansyah [aut],
Francis K.C. Hui [aut],
Pekka Korhonen [aut],
Sara Taskinen [aut],
Bert van der Veen [aut],
David I. Warton [aut]
Maintainer: Jenni Niku <jenni.m.e.niku@jyu.fi>
Diff between gllvm versions 2.0.13 dated 2026-07-09 and 2.0.15 dated 2026-09-11
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Title: Bayesian Inference of Vector Autoregressive and Error Correction
Models
Description: Assists in the set-up of algorithms for Bayesian inference of vector autoregressive (VAR) and error correction (VEC) models. Functions for posterior simulation, forecasting, impulse response analysis and forecast error variance decomposition are largely based on the introductory texts of Chan, Koop, Poirier and Tobias (2019, ISBN: 9781108437493), Koop and Korobilis (2010) <doi:10.1561/0800000013> and Luetkepohl (2006, ISBN: 9783540262398).
Author: Franz X. Mohr [aut, cre]
Maintainer: Franz X. Mohr <franz.x.mohr@outlook.com>
Diff between bvartools versions 0.2.4 dated 2024-01-08 and 0.3.0 dated 2026-09-11
bvartools-0.2.4/bvartools/src/prep_covar_data.cpp |only bvartools-0.3.0/bvartools/DESCRIPTION | 21 bvartools-0.3.0/bvartools/MD5 | 287 - bvartools-0.3.0/bvartools/NAMESPACE | 114 bvartools-0.3.0/bvartools/NEWS.md | 306 + bvartools-0.3.0/bvartools/R/RcppExports.R | 1792 +++++----- bvartools-0.3.0/bvartools/R/add_priors.R | 50 bvartools-0.3.0/bvartools/R/add_priors.bvarmodel.R | 1240 +++--- bvartools-0.3.0/bvartools/R/add_priors.bvecmodel.R | 1452 ++++---- bvartools-0.3.0/bvartools/R/add_priors.dfmodel.R | 352 - bvartools-0.3.0/bvartools/R/bvar.R | 630 +-- bvartools-0.3.0/bvartools/R/bvar_fill_helper.R | 94 bvartools-0.3.0/bvartools/R/bvarpost.R | 243 - bvartools-0.3.0/bvartools/R/bvartools-package.R | 102 bvartools-0.3.0/bvartools/R/bvec.R | 1320 +++---- bvartools-0.3.0/bvartools/R/bvec_to_bvar.R | 1027 ++--- bvartools-0.3.0/bvartools/R/bvecpost.R | 407 +- bvartools-0.3.0/bvartools/R/data.R | 184 - bvartools-0.3.0/bvartools/R/dfm.R | 187 - bvartools-0.3.0/bvartools/R/dfmpost.R | 107 bvartools-0.3.0/bvartools/R/draw_posterior.R | 29 bvartools-0.3.0/bvartools/R/draw_posterior.bvarmodel.R | 172 bvartools-0.3.0/bvartools/R/draw_posterior.bvecmodel.R | 194 - 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Title: Prediction Rule Ensembles
Description: Fits prediction rule ensembles (PREs). Largely follows the
procedure for deriving PREs as described in Friedman & Popescu (2008;
<DOI:10.1214/07-AOAS148>), with adjustments and improvements described in
Fokkema (2020; <DOI:10.18637/jss.v092.i12>) and Fokkema & Strobl
(2020; <DOI:10.1037/met0000256>). The main function pre() derives
prediction rule ensembles consisting of rules and/or linear terms for
continuous, binary, count, multinomial, survival and multivariate
continuous responses. Function gpe() derives generalized prediction
ensembles, consisting of rules, hinge and linear functions of the
predictor variables.
Author: Marjolein Fokkema [aut, cre],
Benjamin Christoffersen [aut],
Giorgio Spadaccini [ctb]
Maintainer: Marjolein Fokkema <m.fokkema@fsw.leidenuniv.nl>
Diff between pre versions 1.1.0 dated 2026-08-31 and 1.1.1 dated 2026-09-11
DESCRIPTION | 6 - MD5 | 26 +++---- NEWS.md | 11 +++ R/shap.R | 2 inst/doc/Missingness.html | 2 inst/doc/relaxed.html | 2 inst/doc/shap.R | 11 +++ inst/doc/shap.Rmd | 32 ++++++++- inst/doc/shap.html | 75 ++++++++++++++-------- inst/doc/speed.html | 12 +-- tests/testthat/previous_results/SHAP_marginal.RDS |binary tests/testthat/previous_results/explain.RDS |binary tests/testthat/test_explain_and_shap.R | 11 ++- vignettes/shap.Rmd | 32 ++++++++- 14 files changed, 159 insertions(+), 63 deletions(-)
Title: MCMC Sampling from 'TMB' Model Object using 'Stan'
Description: Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) <DOI:10.1371/journal.pone.0197954>.
Author: Kasper Kristensen [aut, cre] ,
Andrew Johnson [ctb],
Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between tmbstan versions 1.2.0 dated 2026-07-28 and 1.2.1 dated 2026-09-11
DESCRIPTION | 22 ++++--- MD5 | 14 ++-- NEWS | 8 ++ inst/doc/tmbstan.html | 20 +++--- inst/model.hpp | 144 ++++++++++++++++++++++++++++++++++---------------- inst/tinytest |only src/include/model.hpp | 144 ++++++++++++++++++++++++++++++++++---------------- tests |only tools/autogen.R | 4 - 9 files changed, 238 insertions(+), 118 deletions(-)
Title: Stateful Matrix Client Helpers
Description: Stateful helpers for building 'Matrix' (<https://matrix.org>)
chat clients in R. Builds on the low-level 'mx.api' Client-Server API
bindings, adding local configuration persistence, room resolution,
sync cursor handling, sync-event extraction, invite acceptance, a
conservative Markdown-to-HTML converter for formatted messages, and
'Olm'/'Megolm' end-to-end encryption orchestration over the optional
'mx.crypto' package.
Author: Troy Hernandez [aut, cre] ,
cornball.ai [cph]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between mx.client versions 0.2.0 dated 2026-08-04 and 0.2.1 dated 2026-09-11
mx.client-0.2.0/mx.client/inst/skills/mx.client |only mx.client-0.2.1/mx.client/DESCRIPTION | 12 mx.client-0.2.1/mx.client/MD5 | 122 +- mx.client-0.2.1/mx.client/NAMESPACE | 21 mx.client-0.2.1/mx.client/NEWS.md | 202 ++++ mx.client-0.2.1/mx.client/R/cross-signing.R |only mx.client-0.2.1/mx.client/R/crypto.R | 74 + mx.client-0.2.1/mx.client/R/e2ee.R | 239 ++++- mx.client-0.2.1/mx.client/R/identity-trust.R |only mx.client-0.2.1/mx.client/R/key-requests.R |only mx.client-0.2.1/mx.client/R/messages.R | 280 ++++++ mx.client-0.2.1/mx.client/R/olm-receive.R |only mx.client-0.2.1/mx.client/R/profile.R | 2 mx.client-0.2.1/mx.client/R/sas-console.R |only mx.client-0.2.1/mx.client/R/sas-display.R |only mx.client-0.2.1/mx.client/R/sas-identity.R |only mx.client-0.2.1/mx.client/R/sas-receive.R |only mx.client-0.2.1/mx.client/R/sas-session.R |only mx.client-0.2.1/mx.client/R/store-version.R |only mx.client-0.2.1/mx.client/R/transport.R | 163 +++ mx.client-0.2.1/mx.client/R/user-verification.R |only mx.client-0.2.1/mx.client/R/verification-transport.R |only mx.client-0.2.1/mx.client/R/verify-console.R |only mx.client-0.2.1/mx.client/README.md | 95 ++ mx.client-0.2.1/mx.client/build/partial.rdb |binary mx.client-0.2.1/mx.client/inst/doc/e2ee.html | 446 ++++++++-- mx.client-0.2.1/mx.client/inst/doc/e2ee.md | 349 +++++++ mx.client-0.2.1/mx.client/inst/skills/matrix-messaging |only mx.client-0.2.1/mx.client/inst/tinytest/test_cross_signing.R |only mx.client-0.2.1/mx.client/inst/tinytest/test_key_requests.R |only mx.client-0.2.1/mx.client/inst/tinytest/test_mx.client.R | 358 ++++++++ mx.client-0.2.1/mx.client/inst/tinytest/test_olm_receive.R |only mx.client-0.2.1/mx.client/inst/tinytest/test_sas.R |only mx.client-0.2.1/mx.client/inst/tinytest/test_sas_identity.R |only mx.client-0.2.1/mx.client/inst/tinytest/test_sas_own_device.R |only mx.client-0.2.1/mx.client/inst/tinytest/test_sas_transport.R |only mx.client-0.2.1/mx.client/inst/tinytest/test_skills.R |only mx.client-0.2.1/mx.client/inst/tinytest/test_store_version.R |only mx.client-0.2.1/mx.client/inst/tinytest/test_transport.R | 270 ++++++ mx.client-0.2.1/mx.client/inst/tinytest/test_user_verification.R |only mx.client-0.2.1/mx.client/man/mx_client_configure.Rd | 12 mx.client-0.2.1/mx.client/man/mx_client_load.Rd | 8 mx.client-0.2.1/mx.client/man/mx_crypto_account.Rd | 3 mx.client-0.2.1/mx.client/man/mx_crypto_account_save.Rd | 3 mx.client-0.2.1/mx.client/man/mx_crypto_claim_otks.Rd | 9 mx.client-0.2.1/mx.client/man/mx_crypto_cross_signing_bootstrap.Rd |only mx.client-0.2.1/mx.client/man/mx_crypto_cross_signing_load.Rd |only mx.client-0.2.1/mx.client/man/mx_crypto_decrypt_event.Rd | 14 mx.client-0.2.1/mx.client/man/mx_crypto_encrypt_event.Rd | 24 mx.client-0.2.1/mx.client/man/mx_crypto_encrypt_for_devices.Rd | 16 mx.client-0.2.1/mx.client/man/mx_crypto_handle_to_device.Rd | 21 mx.client-0.2.1/mx.client/man/mx_crypto_known_devices.Rd | 31 mx.client-0.2.1/mx.client/man/mx_crypto_mark_key_requests_sent.Rd |only mx.client-0.2.1/mx.client/man/mx_crypto_process_sync.Rd | 40 mx.client-0.2.1/mx.client/man/mx_crypto_room_key_payload.Rd | 15 mx.client-0.2.1/mx.client/man/mx_crypto_send_key_requests.Rd |only mx.client-0.2.1/mx.client/man/mx_crypto_sessions_load.Rd | 3 mx.client-0.2.1/mx.client/man/mx_crypto_sessions_new.Rd | 2 mx.client-0.2.1/mx.client/man/mx_crypto_sessions_save.Rd | 1 mx.client-0.2.1/mx.client/man/mx_crypto_user_trust.Rd |only mx.client-0.2.1/mx.client/man/mx_crypto_verify_user.Rd |only mx.client-0.2.1/mx.client/man/mx_extract_invite_records.Rd |only mx.client-0.2.1/mx.client/man/mx_extract_media_events.Rd |only mx.client-0.2.1/mx.client/man/mx_extract_reaction_verdict.Rd | 10 mx.client-0.2.1/mx.client/man/mx_extract_reactions.Rd |only mx.client-0.2.1/mx.client/man/mx_extract_text_events.Rd | 10 mx.client-0.2.1/mx.client/man/mx_resolve_room.Rd | 10 mx.client-0.2.1/mx.client/man/mx_sas_accept.Rd |only mx.client-0.2.1/mx.client/man/mx_sas_cancel.Rd |only mx.client-0.2.1/mx.client/man/mx_sas_confirm.Rd |only mx.client-0.2.1/mx.client/man/mx_sas_console.Rd |only mx.client-0.2.1/mx.client/man/mx_sas_from_request.Rd |only mx.client-0.2.1/mx.client/man/mx_sas_outgoing.Rd |only mx.client-0.2.1/mx.client/man/mx_sas_receive.Rd |only mx.client-0.2.1/mx.client/man/mx_sas_record_trust.Rd |only mx.client-0.2.1/mx.client/man/mx_sas_session.Rd |only mx.client-0.2.1/mx.client/man/mx_sas_start.Rd |only mx.client-0.2.1/mx.client/man/mx_sas_status.Rd |only mx.client-0.2.1/mx.client/man/mx_send_encrypted.Rd | 18 mx.client-0.2.1/mx.client/man/mx_send_media.Rd | 14 mx.client-0.2.1/mx.client/man/mx_send_table.Rd | 11 mx.client-0.2.1/mx.client/man/mx_send_text.Rd | 24 mx.client-0.2.1/mx.client/man/mx_sync_update.Rd | 10 mx.client-0.2.1/mx.client/man/mx_verify_console.Rd |only mx.client-0.2.1/mx.client/vignettes/e2ee.md | 349 +++++++ 85 files changed, 3027 insertions(+), 264 deletions(-)
Title: Bayesian Reconciliation in the 'fable' Framework
Description: Implements the 'bayesRecon' probabilistic reconciliation methods
within the 'fable' framework for hierarchical time series forecasting.
Bayesian reconciliation (bayesRecon) methods are accessed via the 'reconcile' verb, following
'fable' conventions. For methodological background, see Corani et al. (2021)
<doi:10.1007/978-3-030-67664-3_13>, Zambon et al. (2024a)
<doi:10.1007/s11222-023-10343-y>, Zambon et al. (2024b)
<https://proceedings.mlr.press/v244/zambon24a.html>, and Carrara et al.
(2026) <doi:10.1016/j.ijforecast.2026.07.003>.
Author: Dario Azzimonti [aut, cre, cph] ,
Stefano Damato [aut] ,
Lorenzo Zambon [aut] ,
Chiara Carrara [aut] ,
Giorgio Corani [aut]
Maintainer: Dario Azzimonti <dario.azzimonti@gmail.com>
Diff between fable.bayesRecon versions 0.2.0 dated 2026-08-21 and 0.2.1 dated 2026-09-11
DESCRIPTION | 13 +++++++------ MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/bayesRecon_MixCond.R | 6 +++--- README.md | 11 +++++++++++ inst/doc/fable.bayesRecon.html | 8 ++++---- man/bayesRecon_MixCond.Rd | 6 +++--- man/figures/README-unnamed-chunk-15-1.png |binary man/figures/README-unnamed-chunk-18-1.png |binary man/figures/README-unnamed-chunk-25-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary 11 files changed, 42 insertions(+), 26 deletions(-)
More information about fable.bayesRecon at CRAN
Permanent link
Title: Visualizing and Quantifying Decision Uncertainty
Description: A suite of tools to help modelers and decision-makers effectively
interpret and communicate decision risk when evaluating multiple policy options.
It uses model outputs from uncertainty analysis for baseline scenarios and policy
alternatives to generate visual representations of uncertainty and quantitative
measures for assessing associated risks. For more details see
Wiggins and colleagues (2025) <doi:10.1371/journal.pone.0332522> and <https://dut.ihe.ca/>.
Author: Megan Wiggins [aut, cre] ,
Marie Betsy Varughese [aut] ,
Ellen Rafferty [aut] ,
Sasha van Katwyk [aut] ,
Christopher McCabe [aut] ,
Jeff Round [aut] ,
Erin Kirwin [aut] ,
Institute of Health Economics [cph, aut],
Canadian Network for Modelling Infect [...truncated...]
Maintainer: Megan Wiggins <mwiggins@ihe.ca>
Diff between DUToolkit versions 1.0.2 dated 2025-10-06 and 1.0.3 dated 2026-09-11
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- NEWS.md | 10 ++++++++++ R/gen_stand_descr.R | 6 +++--- R/plot_density.R | 22 +++++++++++++++------- R/plot_fan.R | 11 ++++++++--- build/vignette.rds |binary inst/doc/Fan_Plots.html | 4 ++-- inst/doc/density_plots.html | 4 ++-- inst/doc/rain_plot.html | 2 +- inst/doc/temporal_plot.html | 2 +- 11 files changed, 57 insertions(+), 34 deletions(-)
Title: Win Time Methods for Time-to-Event Data in Clinical Trials
Description: Performs an analysis of time-to-event clinical trial data using various "win time" methods,
including 'ewt', 'ewtr', 'rmt', 'ewtp', 'rewtp', 'ewtpr', 'rewtpr', 'max', 'wtr', 'rwtr', 'pwt', and 'rpwt'. These methods are used to calculate and compare
treatment effects on ordered composite endpoints. The package handles event times, event indicators, and treatment
arm indicators and supports calculations on observed and resampled data. Detailed explanations of each method and
usage examples are provided in "Use of win time for ordered composite endpoints in clinical trials," by Troendle et al.
(2024)<doi:10.1002/sim.10045>. For more information, see the package documentation or the vignette titled "Introduction to wintime."
Author: James Troendle [aut, cre],
Samuel Lawrence [aut]
Maintainer: James Troendle <james.troendle@nih.gov>
Diff between wintime versions 0.4.4 dated 2026-04-23 and 1.0.0 dated 2026-09-11
DESCRIPTION | 11 MD5 | 58 - R/bootstrap.R | 28 R/ewt.R | 409 ++++++-- R/ewtp.R | 443 ++++---- R/ewtpr.R | 1394 ++++++++++------------------ R/markov.R | 57 + R/perm.R | 17 R/rewtp.R | 321 +++--- R/rewtpr.R | 1145 ++++++++-------------- R/rmt.R | 477 +++++---- R/wintime.R | 128 -- build/vignette.rds |binary inst/doc/wintime_vignette.Rmd | 2 inst/doc/wintime_vignette.html | 369 +++---- man/EWT.Rd | 25 man/EWTP.Rd | 6 man/EWTPR.Rd | 28 man/REWTP.Rd | 6 man/REWTPR.Rd | 16 man/RMT.Rd | 23 man/bootstrap.Rd | 5 man/markov.Rd | 6 man/perm.Rd | 5 man/wintime.Rd | 54 - tests/testthat/_problems |only tests/testthat/test-main_wintime_function.R | 33 vignettes/wintime_vignette.Rmd | 2 28 files changed, 2314 insertions(+), 2754 deletions(-)
Title: Access the Weekly 'TidyTuesday' Project Dataset
Description: 'TidyTuesday' is a project by the 'Data Science Learning
Community' in which they post a weekly dataset in a public data
repository (<https://github.com/rfordatascience/tidytuesday>) for
people to analyze and visualize. This package provides the tools to
easily download this data and the description of the source.
Author: Jon Harmon [aut, cre] ,
Ellis Hughes [aut],
Thomas Mock [ctb],
Data Science Learning Community [dtc]
Maintainer: Jon Harmon <jonthegeek@gmail.com>
Diff between tidytuesdayR versions 1.3.2 dated 2026-04-12 and 1.3.3 dated 2026-09-11
DESCRIPTION | 21 +++++------ MD5 | 56 ++++++++++++++--------------- NAMESPACE | 8 ++-- NEWS.md | 6 +++ R/github_api.R | 10 ++++- R/tt_available.R | 4 -- R/tt_meta.R | 6 +++ build/vignette.rds |binary man/tidytuesdayR-package.Rd | 1 tests/testthat/_snaps/aaa-conditions.md | 6 +-- tests/testthat/_snaps/github_api.md | 36 ++++++------------ tests/testthat/_snaps/last_tuesday.md | 10 ++--- tests/testthat/_snaps/tt_available.md | 5 +- tests/testthat/_snaps/tt_check_date.md | 57 ++++++++++-------------------- tests/testthat/_snaps/tt_download.md | 6 +-- tests/testthat/_snaps/tt_download_file.md | 11 ++--- tests/testthat/_snaps/tt_load_gh.md | 6 +-- tests/testthat/_snaps/tt_meta.md | 26 +++++++------ tests/testthat/_snaps/tt_submit.md | 42 +++++++--------------- tests/testthat/test-aaa-conditions.R | 1 tests/testthat/test-github_api.R | 38 ++++++++++++++++++++ tests/testthat/test-last_tuesday.R | 1 tests/testthat/test-tt_available.R | 1 tests/testthat/test-tt_check_date.R | 6 +++ tests/testthat/test-tt_download.R | 1 tests/testthat/test-tt_download_file.R | 1 tests/testthat/test-tt_load_gh.R | 1 tests/testthat/test-tt_meta.R | 13 ++++++ tests/testthat/test-tt_submit.R | 6 +++ 29 files changed, 211 insertions(+), 175 deletions(-)
Title: Joint Estimation in Linear Quantile Regression
Description: Joint estimation of quantile specific intercept and slope parameters in a linear regression setting.
Author: Surya Tokdar [aut, cre] ,
Erika Cunningham [aut]
Maintainer: Surya Tokdar <surya.tokdar@duke.edu>
Diff between qrjoint versions 2.0-11 dated 2025-09-24 and 2.1-0 dated 2026-09-11
qrjoint-2.0-11/qrjoint/src/qrjoint.c |only qrjoint-2.0-11/qrjoint/src/registerDynamicSymbol.c |only qrjoint-2.1-0/qrjoint/DESCRIPTION | 18 ++- qrjoint-2.1-0/qrjoint/MD5 | 25 +++- qrjoint-2.1-0/qrjoint/NAMESPACE | 3 qrjoint-2.1-0/qrjoint/NEWS.md |only qrjoint-2.1-0/qrjoint/R/RcppExports.R |only qrjoint-2.1-0/qrjoint/R/qrjoint.R | 113 ++++++++++----------- qrjoint-2.1-0/qrjoint/man/redmaple.Rd | 2 qrjoint-2.1-0/qrjoint/src/Makevars |only qrjoint-2.1-0/qrjoint/src/RcppExports.cpp |only qrjoint-2.1-0/qrjoint/src/admcmc.cpp |only qrjoint-2.1-0/qrjoint/src/admcmc.h |only qrjoint-2.1-0/qrjoint/src/agess.cpp |only qrjoint-2.1-0/qrjoint/src/agess.h |only qrjoint-2.1-0/qrjoint/src/basedist.h |only qrjoint-2.1-0/qrjoint/src/common.h |only qrjoint-2.1-0/qrjoint/src/exports.cpp |only qrjoint-2.1-0/qrjoint/src/gpmodel.cpp |only qrjoint-2.1-0/qrjoint/src/gpmodel.h |only qrjoint-2.1-0/qrjoint/src/profile.h |only qrjoint-2.1-0/qrjoint/src/robust_chol.h |only 22 files changed, 88 insertions(+), 73 deletions(-)
Title: Animated Glass-Style Tabs and Select Inputs for 'Shiny'
Description: Tools for creating animated glassmorphism-style tab
navigation and select filter widgets in 'Shiny' applications.
Provides a tab navigation component with a sliding glass halo
animation, a searchable multi-select dropdown, and a single-select
dropdown - all with multiple colour themes and server-side update
helpers. Tabs support icons, numeric badges, disable/enable toggling,
runtime append/remove, reactive rendering via 'renderGlassTabs()', URL
bookmarking, responsive overflow modes, optional touch gestures,
reduced-motion support, and compact mode for dashboard card layouts.
'glassTabCondition()' generates 'conditionalPanel()' condition strings
without needing to recall the internal input key pattern.
'glasstabs_news()' displays the release notes from the R console.
Built-in example apps can be launched with 'runGlassExample()'. All
widgets are compatible with standard 'Shiny' layouts and 'bs4Dash'
dashboards and 'bslib' themed applications. An experimental
'glassPage()' helper prov [...truncated...]
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between glasstabs versions 0.3.4 dated 2026-07-31 and 0.4.0 dated 2026-09-11
glasstabs-0.3.4/glasstabs/inst/examples/connect-workflow/manifest.json |only glasstabs-0.4.0/glasstabs/DESCRIPTION | 19 glasstabs-0.4.0/glasstabs/MD5 | 104 glasstabs-0.4.0/glasstabs/NAMESPACE | 1 glasstabs-0.4.0/glasstabs/NEWS.md | 59 glasstabs-0.4.0/glasstabs/R/glassSelect.R | 1106 +- glasstabs-0.4.0/glasstabs/R/glass_multiselect.R | 1992 +-- glasstabs-0.4.0/glasstabs/R/glass_page.R |only glasstabs-0.4.0/glasstabs/R/glass_select_theme.R | 289 glasstabs-0.4.0/glasstabs/R/glass_tab_theme.R | 286 glasstabs-0.4.0/glasstabs/R/glass_tabs.R | 146 glasstabs-0.4.0/glasstabs/R/tab-utils.R | 146 glasstabs-0.4.0/glasstabs/R/utils.R | 387 glasstabs-0.4.0/glasstabs/README.md | 88 glasstabs-0.4.0/glasstabs/build/vignette.rds |binary glasstabs-0.4.0/glasstabs/inst/WORDLIST | 158 glasstabs-0.4.0/glasstabs/inst/cheatsheet/glasstabs-cheatsheet.pdf |binary glasstabs-0.4.0/glasstabs/inst/cheatsheet/glasstabs-cheatsheet.tex | 643 - glasstabs-0.4.0/glasstabs/inst/doc/cheatsheet.R | 8 glasstabs-0.4.0/glasstabs/inst/doc/cheatsheet.Rmd | 11 glasstabs-0.4.0/glasstabs/inst/doc/cheatsheet.html | 454 glasstabs-0.4.0/glasstabs/inst/doc/indicators.R | 1 glasstabs-0.4.0/glasstabs/inst/doc/indicators.Rmd | 3 glasstabs-0.4.0/glasstabs/inst/doc/indicators.html | 19 glasstabs-0.4.0/glasstabs/inst/doc/posit-connect.R | 3 glasstabs-0.4.0/glasstabs/inst/doc/posit-connect.Rmd | 48 glasstabs-0.4.0/glasstabs/inst/doc/posit-connect.html | 81 glasstabs-0.4.0/glasstabs/inst/doc/responsive-accessibility.R |only glasstabs-0.4.0/glasstabs/inst/doc/responsive-accessibility.Rmd |only glasstabs-0.4.0/glasstabs/inst/doc/responsive-accessibility.html |only glasstabs-0.4.0/glasstabs/inst/doc/tabs.R | 28 glasstabs-0.4.0/glasstabs/inst/doc/tabs.Rmd | 597 - glasstabs-0.4.0/glasstabs/inst/doc/tabs.html | 276 glasstabs-0.4.0/glasstabs/inst/examples/connect-workflow/app.R | 338 glasstabs-0.4.0/glasstabs/inst/examples/indicators/app.R | 2 glasstabs-0.4.0/glasstabs/inst/www/glass.css | 2373 ++-- glasstabs-0.4.0/glasstabs/inst/www/glass.js | 5283 +++++----- glasstabs-0.4.0/glasstabs/man/glassPage.Rd |only glasstabs-0.4.0/glasstabs/man/glassTabsUI.Rd | 22 glasstabs-0.4.0/glasstabs/man/glass_select_theme.Rd | 6 glasstabs-0.4.0/glasstabs/man/glass_tab_theme.Rd | 152 glasstabs-0.4.0/glasstabs/man/useGlassTabs.Rd | 72 glasstabs-0.4.0/glasstabs/tests/testthat/_snaps/golden-output.md | 226 glasstabs-0.4.0/glasstabs/tests/testthat/apps/browser-interactions/app.R | 241 glasstabs-0.4.0/glasstabs/tests/testthat/test-accessibility-and-close.R | 318 glasstabs-0.4.0/glasstabs/tests/testthat/test-browser-interactions.R | 834 + glasstabs-0.4.0/glasstabs/tests/testthat/test-glass-page.R |only glasstabs-0.4.0/glasstabs/tests/testthat/test-glassselect.R | 716 - glasstabs-0.4.0/glasstabs/tests/testthat/test-multiselect.R | 944 - glasstabs-0.4.0/glasstabs/tests/testthat/test-server-select.R | 54 glasstabs-0.4.0/glasstabs/tests/testthat/test-tabs.R | 98 glasstabs-0.4.0/glasstabs/tests/testthat/test-themes.R | 261 glasstabs-0.4.0/glasstabs/vignettes/cheatsheet.Rmd | 11 glasstabs-0.4.0/glasstabs/vignettes/indicators.Rmd | 3 glasstabs-0.4.0/glasstabs/vignettes/posit-connect.Rmd | 48 glasstabs-0.4.0/glasstabs/vignettes/responsive-accessibility.Rmd |only glasstabs-0.4.0/glasstabs/vignettes/tabs.Rmd | 597 - 57 files changed, 10934 insertions(+), 8618 deletions(-)
Title: Padronizador de Endereços Brasileiros (Brazilian Addresses
Standardizer)
Description: Padroniza endereços brasileiros a partir de diferentes
critérios. Os métodos de padronização incluem apenas manipulações
básicas de strings, não oferecendo suporte a correspondências
probabilÃsticas entre strings. (Standardizes brazilian addresses using
different criteria. Standardization methods include only basic string
manipulation, not supporting probabilistic matches between strings.)
Author: Daniel Herszenhut [aut] ,
Rafael H. M. Pereira [aut, cre] ,
Gabriel Garcia de Almeida [aut] ,
Lucas Mation [aut]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between enderecobr versions 0.6.0 dated 2026-09-10 and 0.6.1 dated 2026-09-11
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Title: AI Agents for Data Analysis
Description: Implements trustworthy large language model agents.
Connect raw data sources, a pool of trusted calculations, and a searchable
context layer that demonstrates how to interpret them.
Then, deploy data agents that answer questions, log interactions, and
can be evaluated and improved over time.
Author: Simon Couch [aut, cre] ,
Sara Altman [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between commons versions 0.0.1 dated 2026-08-07 and 0.1.0 dated 2026-09-11
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Title: Calculate and Map Distances Between Phylogenetic Trees
Description: Implements measures of tree similarity, including
information-based generalized Robinson-Foulds distances
(Phylogenetic Information Distance, Clustering Information Distance,
Matching Split Information Distance; Smith 2020)
<doi:10.1093/bioinformatics/btaa614>;
Jaccard-Robinson-Foulds distances (Bocker et al. 2013)
<doi:10.1007/978-3-642-40453-5_13>,
including the Nye et al. (2006) metric <doi:10.1093/bioinformatics/bti720>;
the Matching Split Distance (Bogdanowicz & Giaro 2012)
<doi:10.1109/TCBB.2011.48>;
the Hierarchical Mutual Information (Perotti et al. 2015)
<doi:10.1103/PhysRevE.92.062825>;
Maximum Agreement Subtree distances;
the Kendall-Colijn (2016) distance <doi:10.1093/molbev/msw124>, and the
Nearest Neighbour Interchange (NNI) distance, approximated per Li et al.
(1996) <doi:10.1007/3-540-61332-3_168>.
Includes tools for visualizing mappings of tree space (Smith 2022)
<doi:10.1093/sysbio/syab100>,
for identifying islands o [...truncated...]
Author: Martin R. Smith [aut, cre, cph, prg] ,
Roy Jonker [prg, cph] ,
Yong Yang [ctb, cph] ,
Yi Cao [ctb, cph] ,
Neil Kaye [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
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TreeDist-2.15.0/TreeDist/inst/doc/Generalized-RF.html | 16 TreeDist-2.15.0/TreeDist/inst/doc/Robinson-Foulds.R | 2 TreeDist-2.15.0/TreeDist/inst/doc/Robinson-Foulds.Rmd | 2 TreeDist-2.15.0/TreeDist/inst/doc/Robinson-Foulds.html | 14 TreeDist-2.15.0/TreeDist/inst/doc/Using-TreeDist.Rmd | 304 TreeDist-2.15.0/TreeDist/inst/doc/Using-TreeDist.html | 8 TreeDist-2.15.0/TreeDist/inst/doc/compare-treesets.Rmd | 354 TreeDist-2.15.0/TreeDist/inst/doc/different-leaves.Rmd | 194 TreeDist-2.15.0/TreeDist/inst/doc/information.Rmd | 580 - TreeDist-2.15.0/TreeDist/inst/doc/landscapes.R | 5 TreeDist-2.15.0/TreeDist/inst/doc/landscapes.Rmd | 253 TreeDist-2.15.0/TreeDist/inst/doc/landscapes.html | 1899 ++++ TreeDist-2.15.0/TreeDist/inst/doc/treespace.Rmd | 942 +- TreeDist-2.15.0/TreeDist/inst/doc/treespace.html | 31 TreeDist-2.15.0/TreeDist/inst/doc/using-distances.Rmd | 856 - TreeDist-2.15.0/TreeDist/inst/doc/using-distances.html | 10 TreeDist-2.15.0/TreeDist/inst/treespace/app.R | 3016 +++--- TreeDist-2.15.0/TreeDist/man/AllSplitPairings.Rd | 78 TreeDist-2.15.0/TreeDist/man/CalculateTreeDistance.Rd | 60 TreeDist-2.15.0/TreeDist/man/CompareAll.Rd | 106 TreeDist-2.15.0/TreeDist/man/Entropy.Rd | 66 TreeDist-2.15.0/TreeDist/man/GeneralizedRF.Rd | 128 TreeDist-2.15.0/TreeDist/man/HH.Rd | 24 TreeDist-2.15.0/TreeDist/man/HPart.Rd | 130 TreeDist-2.15.0/TreeDist/man/HierarchicalMutualInfo.Rd | 281 TreeDist-2.15.0/TreeDist/man/HierarchicalMutualInformation.Rd | 24 TreeDist-2.15.0/TreeDist/man/Islands.Rd | 158 TreeDist-2.15.0/TreeDist/man/JaccardRobinsonFoulds.Rd | 293 TreeDist-2.15.0/TreeDist/man/KMeansPP.Rd | 110 TreeDist-2.15.0/TreeDist/man/KendallColijn.Rd | 291 TreeDist-2.15.0/TreeDist/man/LAPJV.Rd | 126 TreeDist-2.15.0/TreeDist/man/MASTSize.Rd | 165 TreeDist-2.15.0/TreeDist/man/MCITree.Rd | 114 TreeDist-2.15.0/TreeDist/man/MSTSegments.Rd | 170 TreeDist-2.15.0/TreeDist/man/MapTrees.Rd | 250 TreeDist-2.15.0/TreeDist/man/MappingQuality.Rd | 112 TreeDist-2.15.0/TreeDist/man/MatchingSplitDistance.Rd | 209 TreeDist-2.15.0/TreeDist/man/MeilaVariationOfInformation.Rd | 118 TreeDist-2.15.0/TreeDist/man/NNIDist.Rd | 243 TreeDist-2.15.0/TreeDist/man/NNIMaxStep.Rd |only TreeDist-2.15.0/TreeDist/man/NormalizeInfo.Rd | 192 TreeDist-2.15.0/TreeDist/man/NyeSimilarity.Rd | 285 TreeDist-2.15.0/TreeDist/man/PathDist.Rd | 177 TreeDist-2.15.0/TreeDist/man/ReduceTrees.Rd | 102 TreeDist-2.15.0/TreeDist/man/ReportMatching.Rd | 54 TreeDist-2.15.0/TreeDist/man/Robinson-Foulds.Rd | 329 TreeDist-2.15.0/TreeDist/man/SPRDist.Rd | 189 TreeDist-2.15.0/TreeDist/man/SpectralEigens.Rd | 102 TreeDist-2.15.0/TreeDist/man/SplitEntropy.Rd | 102 TreeDist-2.15.0/TreeDist/man/SplitSharedInformation.Rd | 196 TreeDist-2.15.0/TreeDist/man/StartParallel.Rd | 210 TreeDist-2.15.0/TreeDist/man/TransferConsensus.Rd | 119 TreeDist-2.15.0/TreeDist/man/TransferDist.Rd | 237 TreeDist-2.15.0/TreeDist/man/TreeDist-package.Rd | 302 TreeDist-2.15.0/TreeDist/man/TreeDistance.Rd | 677 - TreeDist-2.15.0/TreeDist/man/TreeInfo.Rd | 432 TreeDist-2.15.0/TreeDist/man/VisualizeMatching.Rd | 178 TreeDist-2.15.0/TreeDist/man/clone.Rd | 66 TreeDist-2.15.0/TreeDist/man/cluster-statistics.Rd | 212 TreeDist-2.15.0/TreeDist/man/cpp_mutual_clustering_all_pairs.Rd | 54 TreeDist-2.15.0/TreeDist/man/cpp_transfer_consensus.Rd | 70 TreeDist-2.15.0/TreeDist/man/cpp_transfer_dist.Rd | 52 TreeDist-2.15.0/TreeDist/man/cpp_transfer_dist_all_pairs.Rd | 48 TreeDist-2.15.0/TreeDist/man/cpp_transfer_dist_cross_pairs.Rd | 48 TreeDist-2.15.0/TreeDist/man/dot-SPRPairDeO.Rd | 44 TreeDist-2.15.0/TreeDist/man/dot-ThreeDPlotServer.Rd | 50 TreeDist-2.15.0/TreeDist/man/dot-TreeDistance.Rd | 46 TreeDist-2.15.0/TreeDist/man/entropy_int.Rd | 40 TreeDist-2.15.0/TreeDist/man/median.multiPhylo.Rd | 188 TreeDist-2.15.0/TreeDist/tests/benchmark/benchmark.R | 36 TreeDist-2.15.0/TreeDist/tests/benchmark/kmeanspp_streaming.R | 194 TreeDist-2.15.0/TreeDist/tests/testthat.R | 8 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/HPart/plot-hpart.svg | 96 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/MSTSegments/mst-example-plot.svg | 622 - TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/Plot3/plotting-order.svg | 134 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/Plot3/simple-plot.svg | 134 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/hidden-edge-labels.svg | 20 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/jrf-vm-matchzeros-false.svg | 24 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/rf-collapse-a-node.svg | 40 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/rf-collapse-and-change.svg | 32 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/rf-vm-single-splits-plainedges.svg | 352 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/test-vm.svg | 32 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/test-vmr.svg | 24 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/visualize-mci-matching.svg | 40 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/vm-one-rooted.svg | 8 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/vm-unrooted.svg | 182 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/plot/test-lc-letters.svg | 162 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/plot/test-uc-letters.svg | 162 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/plot/test-with-space.svg | 162 TreeDist-2.15.0/TreeDist/tests/testthat/_snaps/plot/test-without-space.svg | 162 TreeDist-2.15.0/TreeDist/tests/testthat/setup.R | 14 TreeDist-2.15.0/TreeDist/tests/testthat/test-HPart.R | 150 TreeDist-2.15.0/TreeDist/tests/testthat/test-Islands.R | 38 TreeDist-2.15.0/TreeDist/tests/testthat/test-MCITree.R | 104 TreeDist-2.15.0/TreeDist/tests/testthat/test-MSTSegments.R | 94 TreeDist-2.15.0/TreeDist/tests/testthat/test-Plot3.R | 56 TreeDist-2.15.0/TreeDist/tests/testthat/test-Reduce.R | 132 TreeDist-2.15.0/TreeDist/tests/testthat/test-VisualizeMatching.R | 310 TreeDist-2.15.0/TreeDist/tests/testthat/test-batch_coverage.R | 892 - TreeDist-2.15.0/TreeDist/tests/testthat/test-binary_entropy_counts.R | 12 TreeDist-2.15.0/TreeDist/tests/testthat/test-cluster_stats.R | 170 TreeDist-2.15.0/TreeDist/tests/testthat/test-day_1985.cpp.r | 154 TreeDist-2.15.0/TreeDist/tests/testthat/test-different-tips.R | 166 TreeDist-2.15.0/TreeDist/tests/testthat/test-hierarchical_mutual_information.R | 124 TreeDist-2.15.0/TreeDist/tests/testthat/test-hmi.cpp.R | 318 TreeDist-2.15.0/TreeDist/tests/testthat/test-information.R | 196 TreeDist-2.15.0/TreeDist/tests/testthat/test-lap.R | 720 - TreeDist-2.15.0/TreeDist/tests/testthat/test-large-trees.R | 254 TreeDist-2.15.0/TreeDist/tests/testthat/test-mast.R | 158 TreeDist-2.15.0/TreeDist/tests/testthat/test-mci_impl.R | 106 TreeDist-2.15.0/TreeDist/tests/testthat/test-pairwise_distances.R | 606 - TreeDist-2.15.0/TreeDist/tests/testthat/test-parallel.R | 50 TreeDist-2.15.0/TreeDist/tests/testthat/test-plot.R | 74 TreeDist-2.15.0/TreeDist/tests/testthat/test-spectral_clustering.R | 36 TreeDist-2.15.0/TreeDist/tests/testthat/test-split_info.R | 142 TreeDist-2.15.0/TreeDist/tests/testthat/test-tree_distance.R | 2062 ++-- TreeDist-2.15.0/TreeDist/tests/testthat/test-tree_distance_info.R |only TreeDist-2.15.0/TreeDist/tests/testthat/test-tree_distance_kc.R | 120 TreeDist-2.15.0/TreeDist/tests/testthat/test-tree_distance_nni.R | 416 TreeDist-2.15.0/TreeDist/tests/testthat/test-tree_distance_path.R | 66 TreeDist-2.15.0/TreeDist/tests/testthat/test-tree_distance_spr.R | 860 - TreeDist-2.15.0/TreeDist/tests/testthat/test-tree_distance_transfer.R | 1014 +- TreeDist-2.15.0/TreeDist/tests/testthat/test-tree_distance_utilities.R | 838 - TreeDist-2.15.0/TreeDist/tests/testthat/test-tree_information.R | 316 TreeDist-2.15.0/TreeDist/vignettes/Generalized-RF.Rmd | 586 - TreeDist-2.15.0/TreeDist/vignettes/Robinson-Foulds.Rmd | 2 TreeDist-2.15.0/TreeDist/vignettes/Using-TreeDist.Rmd | 304 TreeDist-2.15.0/TreeDist/vignettes/compare-treesets.Rmd | 354 TreeDist-2.15.0/TreeDist/vignettes/different-leaves.Rmd | 194 TreeDist-2.15.0/TreeDist/vignettes/information.Rmd | 580 - TreeDist-2.15.0/TreeDist/vignettes/landscapes.Rmd | 253 TreeDist-2.15.0/TreeDist/vignettes/treespace.Rmd | 942 +- TreeDist-2.15.0/TreeDist/vignettes/using-distances.Rmd | 856 - 179 files changed, 28379 insertions(+), 26277 deletions(-)
Title: Rectangle Nested Lists
Description: A tool to rectangle a nested list, that is to convert it into
a 'tibble'. This is done automatically or according to a given
specification. A common use case is for nested lists coming from
parsing 'JSON' files, or the 'JSON' responses of 'REST' 'APIs'.
'Rectangling' uses the 'vctrs' package, and therefore offers a wide
support of vector types.
Author: Jon Harmon [aut, cre] ,
Maximilian Girlich [aut, cph],
Kirill Mueller [ctb]
Maintainer: Jon Harmon <jonthegeek@gmail.com>
Diff between tibblify versions 0.4.1 dated 2026-05-12 and 0.4.2 dated 2026-09-11
DESCRIPTION | 8 MD5 | 87 +- NAMESPACE | 30 NEWS.md | 4 build/vignette.rds |binary src/add-value.c | 17 tests/testthat/_problems |only tests/testthat/_snaps/format-tib.md | 806 +++++++++++------------ tests/testthat/_snaps/format-tibblify_object.md | 18 tests/testthat/_snaps/format-tspec.md | 58 - tests/testthat/_snaps/guess_tspec.md | 10 tests/testthat/_snaps/guess_tspec_df.md | 54 - tests/testthat/_snaps/guess_tspec_list.md | 80 +- tests/testthat/_snaps/guess_tspec_object.md | 790 +++++++++++----------- tests/testthat/_snaps/guess_tspec_object_list.md | 228 +++--- tests/testthat/_snaps/nest_tree.md | 300 ++++---- tests/testthat/_snaps/shape_utils.md | 136 +-- tests/testthat/_snaps/spec_combine.md | 498 +++++++------- tests/testthat/_snaps/spec_inform_unspecified.md | 54 - tests/testthat/_snaps/spec_prep_recursive.md | 22 tests/testthat/_snaps/tib_spec_basics.md | 470 ++++++------- tests/testthat/_snaps/tib_spec_other.md | 18 tests/testthat/_snaps/tibblify.md | 650 +++++++++--------- tests/testthat/_snaps/tspec.md | 242 +++--- tests/testthat/_snaps/unnest_tree.md | 324 ++++----- tests/testthat/_snaps/unpack_tspec.md | 72 +- tests/testthat/_snaps/untibblify.md | 92 +- tests/testthat/test-shape_utils.R | 1 tests/testthat/test-tibblify.R | 42 + 29 files changed, 2593 insertions(+), 2518 deletions(-)
Title: Amazing Random Facts About the World's Greatest Hacker
Description: Display a randomly selected quote about Richard M. Stallman
based on the collection in the 'GNU Octave' function 'fact()' which was
aggregated by Jordi Gutiérrez Hermoso based on the (now defunct) site
stallmanfacts.com (which is accessible only via <http://archive.org>).
Author: Dirk Eddelbuettel [aut, cre] ,
Octave Authors [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between rmsfact versions 0.0.3 dated 2016-08-04 and 0.0.4 dated 2026-09-11
ChangeLog | 75 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 19 +++++++++----- MD5 | 12 ++++----- R/rmsfact.R | 6 +++- README.md | 50 ++++++++++++++++++++++++++------------ inst/NEWS.Rd | 11 +++++++- man/rmsfact.Rd | 4 +-- 7 files changed, 145 insertions(+), 32 deletions(-)
Title: Calculation of Comorbidity and Frailty Scores
Description: Computes comorbidity indices and combined frailty scores for
multiple ICD coding systems, including ICD-10-CA, ICD-10-CM, and ICD-11.
The package provides tools to preprocess episode data, map diagnosis codes
to chronic categories, propagate conditions across episodes, and generate
comorbidity and frailty measures. The methodology is described in
Nikiema, Bayani, and Bally (2026), "A Semantic-Based Carry-Forward
Approach: Uncovering Chronic Disease Burden in Real-World Data Analysis",
International Journal of Medical Informatics, article 106709
<doi:10.1016/j.ijmedinf.2026.106709>.
Author: Azadeh Bayani [aut, cre] ,
Jean Noel Nikiema [ctb],
Michele Bally [ctb]
Maintainer: Azadeh Bayani <azadeh.bayani@umontreal.ca>
Diff between LABTNSCPSS versions 1.0.4 dated 2026-09-10 and 1.0.5 dated 2026-09-11
DESCRIPTION | 42 +++++++++++++++++++++++++++++++++++------- MD5 | 4 ++-- man/LABTNSCPSS-package.Rd | 2 +- 3 files changed, 38 insertions(+), 10 deletions(-)
Title: Discrete Numeric Series
Description: Provides a framework for representing discrete numeric series
(enumerable sets of numbers) that may be finite or infinite. Series can
be traversed, combined using arithmetic operations, tested for membership,
and queried for limit points ("sinks"), without explicit enumeration of
all elements.
Author: Vincenzo Coia [aut, cre, cph] ,
Carlo De Michele [aut]
Maintainer: Vincenzo Coia <vincenzo.coia@gmail.com>
Diff between discretes versions 0.1.0 dated 2026-03-31 and 0.1.1 dated 2026-09-11
DESCRIPTION | 19 +++++----- MD5 | 53 +++++++++++++++-------------- NAMESPACE | 1 NEWS.md | 13 +++++++ R/Summary.discretes.R |only R/num_discretes.R | 14 ++++++- R/num_discretes.dsct_arithmetic.R | 2 - R/num_discretes.dsct_inverse.R | 2 - R/num_discretes.dsct_keep.R | 2 - R/num_discretes.dsct_negation.R | 2 - R/num_discretes.dsct_transform.R | 7 +++ R/num_discretes.dsct_union.R | 2 - R/num_discretes.numeric.R | 2 - R/validate_transform_fun.R | 39 +++++++++++++++++++++ build/vignette.rds |binary inst/doc/creating-numeric-series.html | 5 +- inst/doc/querying-numeric-series.html | 5 +- inst/doc/signed_zero.html | 5 +- inst/doc/tolerance.html | 5 +- man/Summary.discretes.Rd |only man/figures/README-unnamed-chunk-7-1.png |binary man/get_discretes.Rd | 5 +- man/has_sink.Rd | 5 +- man/num_discretes.Rd | 5 +- tests/testthat/test-negative_zero.R | 10 +++-- tests/testthat/test-num_discretes.R | 16 +++++++++ tests/testthat/test-summary.R |only tests/testthat/test-transform.R | 37 ++++++++++++++++++++ tests/testthat/test-union.R | 55 ++++++++++++++++++++++++++++++- 29 files changed, 245 insertions(+), 66 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-29 0.24.0-1
2026-06-03 0.23.0-1
2026-04-08 0.23.0
2026-01-20 0.22.0
2025-11-19 0.21.0
2025-09-16 0.20.0
2025-07-13 0.19.0
2025-05-27 0.18.0
2025-03-07 0.17.0
2025-01-22 0.16.0
2024-11-14 0.15.0
2024-09-06 0.14.0
2024-07-08 0.13.0
2024-05-22 0.12.0
2024-04-17 0.11.0.1
2024-02-22 0.10.0
2024-01-09 0.9.0
2023-11-09 0.8.0
2023-10-11 0.7.0.1
2023-08-30 0.6.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-25 25.11.22
2025-02-26 25.2.25
2025-02-20 25.2.18
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-03 0.1.2
2024-01-25 0.1.1
2023-12-21 0.1.0
2023-12-11 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-08-23 0.24.0-2
2026-07-30 0.24.0-1
2026-06-04 0.23.0-2
2026-04-09 0.23.0-1
2026-03-25 0.22.0-2
2026-03-09 0.22.0-1
2026-01-21 0.22.0
2025-11-20 0.21.0
2025-09-17 0.20.0
2025-07-20 0.19.0-1
2025-07-13 0.19.0
2025-05-27 0.18.0
2025-03-07 0.17.0
2025-01-22 0.16.0
2024-11-14 0.15.0
2024-09-06 0.14.0
2024-07-09 0.13.0
2024-05-22 0.12.0
2024-04-02 0.11.0
2024-02-22 0.10.0
2024-01-16 0.9.0.1
2023-11-10 0.8.0
2023-10-07 0.7.0.1
2023-09-27 0.7.0
2023-08-30 0.6.0
2023-06-22 0.5.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-08-21 0.1.4
2025-08-23 0.1.3
2025-04-14 0.1.2
2025-02-26 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-29 0.24.0-1
2026-06-03 0.23.0-1
2026-04-08 0.23.0
2026-01-21 0.22.0
2025-11-19 0.21.0
2025-09-16 0.20.0
2025-07-13 0.19.0
2025-05-27 0.18.0
2025-03-07 0.17.0
2025-01-22 0.16.0
2024-11-14 0.15.0
2024-09-06 0.14.0
2024-07-09 0.13.0
2024-05-22 0.12.0
2024-04-15 0.11.0.1
2024-04-02 0.11.0
2024-02-22 0.10.0
2024-01-21 0.9.0.1
2024-01-09 0.9.0
2023-12-12 0.8.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-13 0.2.1.0
2023-09-07 0.1-1
2023-08-08 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-06-05 0.2.0.3
2023-12-13 0.2.0.2
2022-11-16 0.2.0.1
2021-03-01 0.2.0
2020-01-14 0.1.5
2019-07-26 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-20 1.0.4
2019-04-11 1.0.3
2018-07-29 1.0
Title: High-Dimensional Repeated Measures
Description: Methods for testing main and interaction effects in possibly
high-dimensional parametric or nonparametric repeated measures in factorial designs.
The observations of the subjects are assumed to be multivariate normal if using the parametric test.
The nonparametric version tests with regard to nonparametric relative effects (based on pseudo-ranks).
It is possible to use up to 2 whole- and 3 subplot factors.
See Happ et al. (2017, <doi:10.1080/15598608.2017.1307792>) for details.
Author: Martin Happ [aut, cre] ,
Solomon W. Harrar [aut],
Arne C. Bathke [aut]
Maintainer: Martin Happ <statistics@happ.co.at>
This is a re-admission after prior archival of version 1.2.1 dated 2020-02-06
Diff between HRM versions 1.2.1 dated 2020-02-06 and 1.3.0 dated 2026-09-11
HRM-1.2.1/HRM/R/GUI.R |only HRM-1.2.1/HRM/R/MVHRM.R |only HRM-1.2.1/HRM/man/GUI_error.Rd |only HRM-1.2.1/HRM/man/gui.results.Rd |only HRM-1.2.1/HRM/man/hrm.GUI.Rd |only HRM-1.2.1/HRM/man/hrm.mv.1w.1f.Rd |only HRM-1.2.1/HRM/man/hrm.mv.internal.Rd |only HRM-1.2.1/HRM/man/hrm_GUI.Rd |only HRM-1.2.1/HRM/tests/testthat/test_mv_1w_1s.R |only HRM-1.3.0/HRM/DESCRIPTION | 41 HRM-1.3.0/HRM/MD5 | 155 +- HRM-1.3.0/HRM/NAMESPACE | 43 HRM-1.3.0/HRM/NEWS.md |only HRM-1.3.0/HRM/R/RcppExports.R | 46 HRM-1.3.0/HRM/R/Repeated.R | 1677 +++++++++++++-------------- HRM-1.3.0/HRM/R/S3methods.R | 242 +-- HRM-1.3.0/HRM/R/conf_int.R | 235 ++- HRM-1.3.0/HRM/R/deprecated.R | 193 +-- HRM-1.3.0/HRM/R/f1.R | 993 +++++++-------- HRM-1.3.0/HRM/R/f1_sub0.R | 377 +++--- HRM-1.3.0/HRM/R/f2.R | 534 ++++---- HRM-1.3.0/HRM/R/f2_old.R | 1116 ++++++++--------- HRM-1.3.0/HRM/R/f3_sub1.R | 536 ++++---- HRM-1.3.0/HRM/R/f3_sub2.R | 506 ++++---- HRM-1.3.0/HRM/R/f3_sub3.R | 592 ++++----- HRM-1.3.0/HRM/R/f4_sub2.R | 605 ++++----- HRM-1.3.0/HRM/R/f4_sub3.R | 510 ++++---- HRM-1.3.0/HRM/R/f4_sub4.R | 606 ++++----- HRM-1.3.0/HRM/R/f5_sub5.R | 602 ++++----- HRM-1.3.0/HRM/R/plot.R | 162 +- HRM-1.3.0/HRM/R/plot2.R | 191 +-- HRM-1.3.0/HRM/R/utility.R | 244 +-- HRM-1.3.0/HRM/README.md | 151 -- HRM-1.3.0/HRM/build |only HRM-1.3.0/HRM/inst/CITATION | 27 HRM-1.3.0/HRM/inst/examples |only HRM-1.3.0/HRM/man/DualEmpirical.Rd | 2 HRM-1.3.0/HRM/man/DualEmpirical2.Rd | 2 HRM-1.3.0/HRM/man/EEG.Rd | 4 HRM-1.3.0/HRM/man/HRM-deprecated.Rd | 3 HRM-1.3.0/HRM/man/HRM.Rd | 58 HRM-1.3.0/HRM/man/I.Rd | 2 HRM-1.3.0/HRM/man/J.Rd | 2 HRM-1.3.0/HRM/man/P.Rd | 2 HRM-1.3.0/HRM/man/confint.HRM.Rd | 26 HRM-1.3.0/HRM/man/dot-E1.Rd | 2 HRM-1.3.0/HRM/man/dot-E2.Rd | 2 HRM-1.3.0/HRM/man/dot-E3.Rd | 6 HRM-1.3.0/HRM/man/dot-E4.Rd | 6 HRM-1.3.0/HRM/man/dot-hrm.sigcode.Rd | 2 HRM-1.3.0/HRM/man/hrm.0w.2s.Rd | 2 HRM-1.3.0/HRM/man/hrm.0w.3s.Rd | 2 HRM-1.3.0/HRM/man/hrm.0w.4s.Rd | 2 HRM-1.3.0/HRM/man/hrm.0w.5s.Rd | 2 HRM-1.3.0/HRM/man/hrm.1f.Rd | 2 HRM-1.3.0/HRM/man/hrm.1w.0f.Rd | 2 HRM-1.3.0/HRM/man/hrm.2w.2f.Rd | 2 HRM-1.3.0/HRM/man/hrm.plot.Rd | 6 HRM-1.3.0/HRM/man/hrm.test.1.none.Rd | 4 HRM-1.3.0/HRM/man/hrm.test.1.one.Rd | 4 HRM-1.3.0/HRM/man/hrm.test.2.one.Rd | 2 HRM-1.3.0/HRM/man/hrm.test.2.two.Rd | 2 HRM-1.3.0/HRM/man/hrm.test.3.three.Rd | 2 HRM-1.3.0/HRM/man/hrm.test.4.four.Rd | 2 HRM-1.3.0/HRM/man/hrm.test.5.five.Rd | 2 HRM-1.3.0/HRM/man/hrm_test.Rd | 11 HRM-1.3.0/HRM/man/hrm_test_internal.Rd | 1 HRM-1.3.0/HRM/man/plot.HRM.Rd | 9 HRM-1.3.0/HRM/src/RcppExports.cpp | 5 HRM-1.3.0/HRM/tests/testthat.R | 8 HRM-1.3.0/HRM/tests/testthat/test_0w_1s.R | 46 HRM-1.3.0/HRM/tests/testthat/test_0w_2s.R | 48 HRM-1.3.0/HRM/tests/testthat/test_0w_3s.R | 72 - HRM-1.3.0/HRM/tests/testthat/test_0w_4s.R | 80 - HRM-1.3.0/HRM/tests/testthat/test_0w_5s.R | 72 - HRM-1.3.0/HRM/tests/testthat/test_1w_0s.R | 36 HRM-1.3.0/HRM/tests/testthat/test_1w_1s.R | 52 HRM-1.3.0/HRM/tests/testthat/test_1w_2s.R | 38 HRM-1.3.0/HRM/tests/testthat/test_1w_3s.R | 66 - HRM-1.3.0/HRM/tests/testthat/test_2w_1s.R | 48 HRM-1.3.0/HRM/tests/testthat/test_2w_2s.R | 38 HRM-1.3.0/HRM/tests/testthat/test_confint.R |only HRM-1.3.0/HRM/tests/testthat/test_matrices.R | 64 - HRM-1.3.0/HRM/tests/testthat/test_plot.R | 29 84 files changed, 5601 insertions(+), 5663 deletions(-)
Title: Simple Engine for Generating Reports using R
Description: Runs R-code present in a pandoc markdown file and
includes the resulting output in the resulting markdown file. This
file can then be converted into any of the output formats
supported by pandoc. The package can also be used as an low dependency
engine for writing package vignettes.
Author: Jan van der Laan [aut, cre] ,
Troy Hernandez [ctb]
Maintainer: Jan van der Laan <jan@ntteloos.nl>
Diff between simplermarkdown versions 0.0.6 dated 2023-03-24 and 0.1.0 dated 2026-09-11
simplermarkdown-0.0.6/simplermarkdown/inst/examples_output/figures/test.pdf |only simplermarkdown-0.1.0/simplermarkdown/DESCRIPTION | 31 +- simplermarkdown-0.1.0/simplermarkdown/MD5 | 13 simplermarkdown-0.1.0/simplermarkdown/NEWS | 10 simplermarkdown-0.1.0/simplermarkdown/R/mdweave_to.R | 6 simplermarkdown-0.1.0/simplermarkdown/build/vignette.rds |binary simplermarkdown-0.1.0/simplermarkdown/inst/doc/intro.html | 150 +++++----- simplermarkdown-0.1.0/simplermarkdown/man/mdweave_to.Rd | 6 8 files changed, 122 insertions(+), 94 deletions(-)
More information about simplermarkdown at CRAN
Permanent link
Title: Import and Export 'Familias' Files
Description: Tools for exchanging pedigree data between the 'pedsuite'
packages and the 'Familias' software for forensic kinship computations
(Egeland et al. (2000) <doi:10.1016/s0379-0738(00)00147-x>). These
functions were split out from the 'forrel' package to streamline
maintenance and provide a lightweight alternative for packages otherwise
independent of 'forrel'.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedFamilias versions 0.2.5 dated 2026-05-17 and 0.2.6 dated 2026-09-11
DESCRIPTION | 8 +++--- MD5 | 20 ++++++++-------- NAMESPACE | 8 ++++-- NEWS.md | 15 ++++++++++++ R/familias2ped.R | 3 ++ R/readFam.R | 53 ++++++++++++++++++++++++++++++++++---------- R/utils.R | 6 ++++ R/writeFam.R | 49 +++++++++++++++++++++++++++++++++------- build/partial.rdb |binary man/readFam.Rd | 12 +++++++++ tests/testthat/test-write.R | 5 ++++ 11 files changed, 142 insertions(+), 37 deletions(-)
Title: Regression Models with Break-Points / Change-Points Estimation
(with Possibly Random Effects)
Description: Fitting regression models where, in addition to possible linear terms, one or more covariates have segmented (i.e., broken-line or piece-wise linear) or stepmented (i.e. piece-wise constant) effects. Multiple breakpoints for the same variable are allowed.
The estimation method is discussed in Muggeo (2003, <doi:10.1002/sim.1545>) and
illustrated in Muggeo (2008, <https://www.r-project.org/doc/Rnews/Rnews_2008-1.pdf>). An approach for hypothesis testing is presented
in Muggeo (2016, <doi:10.1080/00949655.2016.1149855>), and interval estimation for the breakpoint is discussed in Muggeo (2017, <doi:10.1111/anzs.12200>).
Segmented mixed models, i.e. random effects in the change point, are discussed in Muggeo (2014, <doi:10.1177/1471082X13504721>).
Estimation of piecewise-constant relationships and changepoints (mean-shift models) is
discussed in Fasola et al. (2018, <doi:10.1007/s00180-017-0740-4>).
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between segmented versions 2.2-1 dated 2026-01-29 and 2.2-2 dated 2026-09-11
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 9 ++++++++- R/plot.segmented.lme.r | 8 ++++++-- R/segmented.lme.r | 12 +++++++++++- R/segreg.r | 6 ++++++ R/selgmented.R | 2 +- man/segmented-package.Rd | 4 ++-- 8 files changed, 45 insertions(+), 18 deletions(-)
Title: Fast and Extensible Pattern Discovery in Tabular Data
Description: Fast and extensible framework for discovering interesting patterns
in tabular data. The package searches combinations of fuzzy or Boolean
predicates and evaluates the resulting subgroups using statistical, logical,
or structural measures. It supports a broad range of pattern-discovery
tasks, including
association rules (Agrawal et al., 1994, <https://www.vldb.org/conf/1994/P487.PDF>),
contrast patterns (Chen, 2022, <doi:10.48550/arXiv.2209.13556>),
emerging patterns (Dong et al., 1999, <doi:10.1145/312129.312191>),
subgroup discovery (Atzmueller, 2015, <doi:10.1002/widm.1144>),
and conditional correlations (Hájek, 1978, <doi:10.1007/978-3-642-66943-9>).
User-defined functions may be supplied to guide custom pattern searches,
making the framework applicable beyond traditional association-rule mining.
Efficient implementation enables pattern discovery on large and dense data
sets. Package includes methods for visualization and supports interactive
explo [...truncated...]
Author: Michal Burda [aut, cre]
Maintainer: Michal Burda <michal.burda@osu.cz>
Diff between nuggets versions 2.2.3 dated 2026-08-20 and 2.2.4 dated 2026-09-11
DESCRIPTION | 8 MD5 | 62 +- NEWS.md | 5 R/add_interest-associations.R | 16 R/arules_association_measures.R | 19 README.md | 9 inst/doc/association-rules.html | 2 inst/doc/comparison-with-arules.R | 78 ++- inst/doc/comparison-with-arules.Rmd | 111 ++++ inst/doc/comparison-with-arules.html | 537 ++++++++++++++++++++---- inst/doc/custom-patterns.html | 2 inst/doc/data-preparation.html | 14 inst/doc/nuggets.html | 48 +- man/add_interest.Rd | 4 man/nuggets-package.Rd | 2 src/dig/BaseChain.h | 10 src/dig/BitChain.h | 28 + src/dig/Bitset.h | 38 + src/dig/Digger.h | 21 src/dig/FloatChain.h | 33 + src/dig/FubitChain.h | 33 + src/dig/SimdChain.h | 33 + src/dig/SparseBitChain.h | 27 - src/test-dig-BitChain.cpp | 22 src/test-dig-Bitset.cpp | 15 src/test-dig-FloatChain.cpp | 26 + src/test-dig-FubitChain.cpp | 26 + src/test-dig-SparseBitChain.cpp | 22 tests/testthat/test-add_interest-associations.R | 45 +- tests/testthat/test-dig_associations.R | 41 + vignettes/comparison-with-arules.Rmd | 111 ++++ vignettes/comparison-with-arules.rds |binary 32 files changed, 1189 insertions(+), 259 deletions(-)
Title: Matrix End-to-End Encryption Primitives
Description: 'Olm' and 'Megolm' encryption ratchet primitives for the
'Matrix' messaging protocol <https://matrix.org/>, wrapping the
'vodozemac' Rust crate. Provides device-key generation, one-time-key
management, 1:1 'Olm' sessions, and 'Megolm' group sessions. Pairs
with the 'mx.api' package, which handles 'Matrix' HTTP transport.
Author: Troy Hernandez [aut, cre] ,
cornball.ai [cph],
The Matrix.org Foundation C.I.C. [ctb, cph] ,
Authors of the dependency Rust crates [ctb]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between mx.crypto versions 0.2.1 dated 2026-08-04 and 0.2.2 dated 2026-09-11
mx.crypto-0.2.1/mx.crypto/inst/doc/security-audit.Rmd |only mx.crypto-0.2.1/mx.crypto/vignettes/security-audit.Rmd |only mx.crypto-0.2.2/mx.crypto/DESCRIPTION | 8 - mx.crypto-0.2.2/mx.crypto/MD5 | 56 ++++++---- mx.crypto-0.2.2/mx.crypto/NAMESPACE | 15 ++ mx.crypto-0.2.2/mx.crypto/NEWS.md | 27 ++++ mx.crypto-0.2.2/mx.crypto/R/cross-signing.R |only mx.crypto-0.2.2/mx.crypto/R/megolm.R | 36 ++++++ mx.crypto-0.2.2/mx.crypto/R/mx.crypto-package.R | 6 - mx.crypto-0.2.2/mx.crypto/R/roxido.R | 10 + mx.crypto-0.2.2/mx.crypto/R/sas.R |only mx.crypto-0.2.2/mx.crypto/README.md | 13 +- mx.crypto-0.2.2/mx.crypto/build/partial.rdb |only mx.crypto-0.2.2/mx.crypto/build/vignette.rds |binary mx.crypto-0.2.2/mx.crypto/inst/cargo.log | 2 mx.crypto-0.2.2/mx.crypto/inst/doc/security-audit.html | 10 + mx.crypto-0.2.2/mx.crypto/inst/doc/security-audit.md |only mx.crypto-0.2.2/mx.crypto/inst/tinytest/test_cross_signing.R |only mx.crypto-0.2.2/mx.crypto/inst/tinytest/test_megolm.R | 16 ++ mx.crypto-0.2.2/mx.crypto/inst/tinytest/test_sas.R |only mx.crypto-0.2.2/mx.crypto/inst/tinytest/test_sas_commitment.R |only mx.crypto-0.2.2/mx.crypto/man/mx.crypto-package.Rd | 15 -- mx.crypto-0.2.2/mx.crypto/man/mxc_megolm_inbound_export.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_megolm_inbound_import.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_megolm_inbound_info.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_sas_bytes.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_sas_commitment.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_sas_establish.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_sas_mac.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_sas_new.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_sas_public.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_sas_verify_mac.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_signing_key_new.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_signing_key_pickle.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_signing_key_public.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_signing_key_sign.Rd |only mx.crypto-0.2.2/mx.crypto/man/mxc_signing_key_unpickle.Rd |only mx.crypto-0.2.2/mx.crypto/src/rust/Cargo.lock | 1 mx.crypto-0.2.2/mx.crypto/src/rust/Cargo.toml | 1 mx.crypto-0.2.2/mx.crypto/src/rust/src/lib.rs | 35 +++++- mx.crypto-0.2.2/mx.crypto/src/rust/src/sas.rs |only mx.crypto-0.2.2/mx.crypto/vignettes/security-audit.md |only 42 files changed, 208 insertions(+), 43 deletions(-)
Title: Read and Write C3D Motion Capture Files
Description: A wrapper for the 'EZC3D' library to work with C3D motion capture data.
Author: Simon Nolte [aut, cre] ,
Benjamin Michaud [cph] ,
German Sport University Cologne [fnd] ,
Aymeric Stamm [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/686>),
July Pilowsky [rev] for rOpenSci, see
<https://github.com/rop [...truncated...]
Maintainer: Simon Nolte <s.nolte@dshs-koeln.de>
Diff between c3dr versions 0.2.0 dated 2025-08-21 and 0.2.1 dated 2026-09-11
DESCRIPTION | 8 LICENSE | 2 MD5 | 40 ++-- NEWS.md | 135 ++++++++-------- README.md | 341 +++++++++++++++++++++--------------------- build/vignette.rds |binary inst/CITATION | 39 ++-- inst/doc/c3dr.html | 141 +++++++++++++++++ man/c3dr-package.Rd | 7 src/ezc3d/Analogs.h | 1 src/ezc3d/AnalogsSubframe.h | 1 src/ezc3d/Channel.h | 1 src/ezc3d/Data.h | 1 src/ezc3d/Frame.h | 1 src/ezc3d/Header.h | 1 src/ezc3d/Point.h | 1 src/ezc3d/Points.h | 1 src/ezc3d/Rotation.h | 1 src/ezc3d/Rotations.h | 1 src/ezc3d/RotationsSubframe.h | 1 src/write.cpp | 2 21 files changed, 450 insertions(+), 276 deletions(-)
Title: Iterative Proportional Repartition Algorithm
Description: Let us consider a sample of patients who can suffer from several diseases simultaneously, in a given set of diseases. The goal of the implemented algorithm is to estimate the individual average cost of each disease, starting from the global health costs available for each patient.
Author: Jean-Benoit Rossel [aut, cre],
Valentin Rousson [aut],
Yves Eggli [aut]
Maintainer: Jean-Benoit Rossel <jean-benoit.rossel@unisante.ch>
Diff between ipr versions 0.1.0 dated 2020-03-20 and 1.0.0 dated 2026-09-11
DESCRIPTION | 22 +++++++--- MD5 | 10 ++-- NAMESPACE | 1 R/ipr.r | 30 +++++++++---- R/ipr_boot.R |only man/ipr.Rd | 121 ++++++++++++++++++++++++++++++++++++++++---------------- man/ipr_boot.Rd |only 7 files changed, 132 insertions(+), 52 deletions(-)
Title: 'HTML' Reporting Made Simple(R)
Description: Create compressed, interactive 'HTML' (Hypertext Markup Language) reports with embedded 'Python' code, custom 'JS' ('JavaScript') and 'CSS' (Cascading Style Sheets), and wrappers for
'CanvasXpress' plots, networks and more. Based on <https://pypi.org/project/py-report-html/>, its sister project.
Author: Alvaro Esteban Martos [aut, cph, cre] ,
Jose Cordoba Caballero [aut, cph] ,
James Perkins [aut, cph] ,
Pedro Seoane Zonjic [aut, cph] ,
Jesus Perez Garcia [aut, cph]
Maintainer: Alvaro Esteban Martos <alvaroesteban@uma.es>
Diff between htmlreportR versions 1.0.0 dated 2024-08-19 and 2.0.1 dated 2026-09-11
htmlreportR-1.0.0/htmlreportR/inst/js/reporteR_menu.css |only htmlreportR-1.0.0/htmlreportR/inst/js/reporteR_menu.js |only htmlreportR-1.0.0/htmlreportR/inst/templates |only htmlreportR-1.0.0/htmlreportR/man/add_header_row_names.Rd |only htmlreportR-1.0.0/htmlreportR/man/barplot-htmlReport-method.Rd |only htmlreportR-1.0.0/htmlreportR/man/build-htmlReport-method.Rd |only htmlreportR-1.0.0/htmlreportR/man/build_body.Rd |only htmlreportR-1.0.0/htmlreportR/man/compress_data.Rd |only htmlreportR-1.0.0/htmlreportR/man/concat.Rd |only htmlreportR-1.0.0/htmlreportR/man/density-htmlReport-method.Rd |only htmlreportR-1.0.0/htmlreportR/man/extract_data.Rd |only htmlreportR-1.0.0/htmlreportR/man/get_data.Rd |only htmlreportR-1.0.0/htmlreportR/man/get_data_for_plot.Rd |only htmlreportR-1.0.0/htmlreportR/man/get_plot.Rd |only htmlreportR-1.0.0/htmlreportR/man/get_plot_data.Rd |only htmlreportR-1.0.0/htmlreportR/man/line-htmlReport-method.Rd |only htmlreportR-1.0.0/htmlreportR/man/parse_data_frame-htmlReport-method.Rd |only htmlreportR-1.0.0/htmlreportR/man/scatter2D-htmlReport-method.Rd |only htmlreportR-1.0.0/htmlreportR/man/static_ggplot_main-htmlReport-method.Rd |only htmlreportR-1.0.0/htmlreportR/man/static_plot_main-htmlReport-method.Rd |only htmlreportR-1.0.0/htmlreportR/man/write_report-htmlReport-method.Rd |only htmlreportR-1.0.0/htmlreportR/tests/check_plots |only htmlreportR-2.0.1/htmlreportR/DESCRIPTION | 28 htmlreportR-2.0.1/htmlreportR/MD5 | 120 htmlreportR-2.0.1/htmlreportR/NAMESPACE | 36 htmlreportR-2.0.1/htmlreportR/NEWS.md | 37 htmlreportR-2.0.1/htmlreportR/R/00-Class.R | 62 htmlreportR-2.0.1/htmlreportR/R/01-CanvasXpress.R | 24 htmlreportR-2.0.1/htmlreportR/R/canvasXpress.R | 78 htmlreportR-2.0.1/htmlreportR/R/htmlreport.R | 1445 +++++++--- htmlreportR-2.0.1/htmlreportR/R/main_htmlreport.R | 5 htmlreportR-2.0.1/htmlreportR/R/utils.R | 221 + htmlreportR-2.0.1/htmlreportR/README.md | 22 htmlreportR-2.0.1/htmlreportR/inst/js/canvasXpress.css | 853 ++++- htmlreportR-2.0.1/htmlreportR/inst/js/canvasXpress.min.js.gz |binary htmlreportR-2.0.1/htmlreportR/inst/js/htmlReport.css | 191 - htmlreportR-2.0.1/htmlreportR/inst/js/htmlReport.js | 57 htmlreportR-2.0.1/htmlreportR/inst/js/htmlreportR_menu.css |only htmlreportR-2.0.1/htmlreportR/inst/js/htmlreportR_menu.js |only htmlreportR-2.0.1/htmlreportR/inst/scripts/convert_Rmd.R |only htmlreportR-2.0.1/htmlreportR/inst/scripts/html_report.R | 47 htmlreportR-2.0.1/htmlreportR/man/col_to_rownames.Rd |only htmlreportR-2.0.1/htmlreportR/man/htmlReport-class.Rd |only htmlreportR-2.0.1/htmlreportR/man/make_html_list.Rd |only htmlreportR-2.0.1/htmlreportR/man/parse_paths.Rd |only htmlreportR-2.0.1/htmlreportR/man/replace_paired_mark.Rd |only htmlreportR-2.0.1/htmlreportR/man/row_to_header.Rd |only htmlreportR-2.0.1/htmlreportR/tests/demo_examples |only htmlreportR-2.0.1/htmlreportR/tests/testthat/test-canvasXpress.R | 147 - htmlreportR-2.0.1/htmlreportR/tests/testthat/test-htmlreport.R | 1274 ++++++-- htmlreportR-2.0.1/htmlreportR/tests/testthat/test-utils.R | 137 51 files changed, 3627 insertions(+), 1157 deletions(-)
Title: Practical Tools for Scientific Computation and Visualisation
Description: Provides utilities for scientific computation and visualisation, with an emphasis on applications in physics and astrophysics. Functionality includes random sampling from spherical and custom distributions, information and entropy analysis, Fourier transforms, two-point correlation estimation, binning and gridding of point sets, two-dimensional interpolation, Monte Carlo integration, vector operations, coordinate transformations, physical constants, and cosmological conversions. Graphics tools support the creation and export of publication-quality plots, animations, colour scales, map projections, and bitmap images. Several of these tools were used by Obreschkow et al. (2020) <doi:10.1093/mnras/staa445>.
Author: Danail Obreschkow [aut, cre]
Maintainer: Danail Obreschkow <danail.obreschkow@gmail.com>
Diff between cooltools versions 2.18 dated 2025-07-23 and 2.33 dated 2026-09-11
DESCRIPTION | 19 - MD5 | 100 +++++--- NAMESPACE | 145 +++++++----- R/angularmomentum.R |only R/bindata.R | 5 R/blur.R |only R/car2pol.R | 13 - R/car2sph.R | 3 R/colorbar.R | 4 R/contourlevel.R | 525 +++++++++++++++++++++++++++++++++++++++-------- R/cosmofct.R | 10 R/cst.R | 2 R/dft.R | 4 R/distradius.R |only R/dpqr.R | 118 ++++++++-- R/entropy.R | 3 R/getgit.R |only R/griddata.R | 167 ++++++++------ R/inertia.R | 69 ++++-- R/kappacorotation.R |only R/kde2.R | 18 + R/linfun.R |only R/moments.R | 76 ++++-- R/planckcolors.R | 6 R/progress.R | 11 R/quadrupole.R | 70 ++++-- R/readhdf5.R | 9 R/scalarproduct.R | 47 ++-- R/streamlines.R |only R/unitvector.R | 19 + R/userattributes.R | 2 R/vectornorm.R | 10 R/vectorproduct.R | 62 +++-- R/writehdf5.R | 53 ++-- man/angularmomentum.Rd |only man/blur.Rd |only man/contourlevel.Rd | 149 ++++++++++--- man/cooltools-package.Rd | 7 man/cst.Rd | 5 man/distradius.Rd |only man/dot-cooltools.env.Rd | 5 man/dpqr.Rd | 31 +- man/getgit.Rd |only man/griddata.Rd | 38 ++- man/inertia.Rd | 30 +- man/kappacorotation.Rd |only man/linfun.Rd |only man/moments.Rd | 31 +- man/planckcolors.Rd | 11 man/progress.Rd | 3 man/quadrupole.Rd | 29 +- man/readhdf5.Rd | 2 man/scalarproduct.Rd | 15 - man/streamlines.Rd |only man/unitvector.Rd | 11 man/vectorproduct.Rd | 18 - man/writehdf5.Rd | 48 ++-- src/RcppExports.cpp | 8 58 files changed, 1383 insertions(+), 628 deletions(-)
Title: Computed ABC Analysis
Description: Identify the most relative data points by dividing a numeric data set into three classes A, B, and C, where class A items are the "import few", class C items are the "trivial many" with class B items being something in between, resembling the idea of the Pareto principle.
This ABC classification is done using an ABC curve, which plots cumulative "Yield" against "Effort", similar to a Lorenz curve. Class borders are then precisely mathematically defined on that curve, aiding in interpretation. Based on: Ultsch A, Lotsch J (2015) "Computed ABC Analysis for rational Selection of most informative Variables in multivariate Data". PLoS ONE 10(6): e0129767. <doi:10.1371/journal.pone.0129767>.
Author: Jorn Lotsch [aut] ,
Andre Himmelspach [aut, cre]
Maintainer: Andre Himmelspach <himmelspach@med.uni-frankfurt.de>
Diff between cABCanalysis versions 1.0.1 dated 2026-06-09 and 1.0.2 dated 2026-09-11
DESCRIPTION | 8 - MD5 | 18 +- NAMESPACE | 1 R/cABC_analysis.R | 28 +++- R/cABC_plotGG.R | 221 +++++++++++++++++++---------------- R/cABC_plot_args.R |only R/cABC_plot_style.R |only man/cABC_analysis.Rd | 17 ++ man/cABC_default_plot_args.Rd |only man/cABC_plotGG.Rd | 12 - man/cABC_plot_style.Rd |only man/cABC_resolve_plot_args.Rd |only tests/testthat/test-cABC_plot_args.R |only 13 files changed, 176 insertions(+), 129 deletions(-)
Title: Automated Tuning and Evaluations of Ecological Niche Models
Description: Runs ecological niche models over all combinations of user-defined settings (i.e., tuning), performs cross validation to evaluate models, and returns data tables to aid in selection of optimal model settings that balance goodness-of-fit and model complexity. Also has functions to partition data spatially (or not) for cross validation, to plot multiple visualizations of results, to run null models to estimate significance and effect sizes of performance metrics, and to calculate range overlap between model predictions, among others. The package was originally built for Maxent models (Phillips et al. 2006, Phillips et al. 2017), but the current version allows possible extensions for any modeling algorithm. The extensive vignette, which guides users through most package functionality but unfortunately has a file size too big for CRAN, can be found here on the package's Github Pages website: <https://jamiemkass.github.io/ENMeval/articles/ENMeval-2.0-vignette.html>.
Author: Jamie M. Kass [aut, cre],
Gonzalo E. Buitrago-Pinilla [aut],
Robert Muscarella [aut],
Peter J. Galante [aut],
Corentin Bohl [aut],
Robert A. Boria [aut],
Mariano Soley-Guardia [aut],
Robert P. Anderson [aut]
Maintainer: Jamie M. Kass <jamie.m.kass@gmail.com>
Diff between ENMeval versions 2.0.5.2 dated 2025-05-01 and 2.0.6 dated 2026-09-11
ENMeval-2.0.5.2/ENMeval/man/plot.sim.dataPrep.Rd |only ENMeval-2.0.6/ENMeval/DESCRIPTION | 21 ENMeval-2.0.6/ENMeval/MD5 | 36 - ENMeval-2.0.6/ENMeval/NAMESPACE | 5 ENMeval-2.0.6/ENMeval/NEWS | 5 ENMeval-2.0.6/ENMeval/R/ENMevaluate.R | 34 - ENMeval-2.0.6/ENMeval/R/partitions.R | 4 ENMeval-2.0.6/ENMeval/R/plotting.R | 600 ++++++++++++++++++- ENMeval-2.0.6/ENMeval/R/utilities.R | 34 + ENMeval-2.0.6/ENMeval/README.md | 8 ENMeval-2.0.6/ENMeval/build/partial.rdb |binary ENMeval-2.0.6/ENMeval/man/ENMeval-package.Rd | 3 ENMeval-2.0.6/ENMeval/man/enm.bioclim.Rd | 5 ENMeval-2.0.6/ENMeval/man/enm.maxent.jar.Rd | 5 ENMeval-2.0.6/ENMeval/man/enm.maxnet.Rd | 5 ENMeval-2.0.6/ENMeval/man/evalplot.densities.Rd |only ENMeval-2.0.6/ENMeval/man/evalplot.density.Rd |only ENMeval-2.0.6/ENMeval/man/evalplot.grps.Rd | 3 ENMeval-2.0.6/ENMeval/man/evalplot.respCurve.Rd |only ENMeval-2.0.6/ENMeval/man/evalplot.respCurve.dens.Rd |only ENMeval-2.0.6/ENMeval/man/evalplot.respCurves.Rd |only ENMeval-2.0.6/ENMeval/man/lookup.algorithm.Rd |only ENMeval-2.0.6/ENMeval/man/lookup.var.names.Rd |only 23 files changed, 691 insertions(+), 77 deletions(-)
Title: Probability Computations on Pedigrees
Description: An implementation of the Elston-Stewart algorithm for
calculating pedigree likelihoods given genetic marker data (Elston and
Stewart (1971) <doi:10.1159/000152448>). The standard algorithm is
extended to allow inbred founders. 'pedprobr' is part of the
'pedsuite', a collection of packages for pedigree analysis in R. In
particular, 'pedprobr' depends on 'pedtools' for pedigree
manipulations and 'pedmut' for mutation modelling. For more
information, see 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedprobr versions 1.1.0 dated 2026-06-22 and 1.1.1 dated 2026-09-11
DESCRIPTION | 8 ++-- MD5 | 18 ++++----- NAMESPACE | 18 +++++---- NEWS.md | 9 ++++ R/likelihood.R | 3 + R/lumpAlleles.R | 71 +++++++++++++++++++++++++++++------- R/oneMarkerDistribution.R | 10 ++++- build/partial.rdb |binary man/lumpAlleles.Rd | 17 ++++++-- tests/testthat/test-oneMarkerDist.R | 12 ++++++ 10 files changed, 126 insertions(+), 40 deletions(-)
Title: Statistical Comparison of Two Networks Based on Several
Invariance Measures
Description: This permutation based hypothesis test, suited for several types of data
supported by the estimateNetwork function of the bootnet package (Epskamp & Fried, 2018),
assesses the difference between two networks based on several invariance measures (network
structure invariance, global strength invariance, edge invariance, several centrality
measures, etc.). Network structures are estimated with l1-regularization. The Network
Comparison Test is suited for comparison of independent (e.g., two different groups) and
dependent samples (e.g., one group that is measured twice). See van Borkulo et al. (2021),
available from <doi:10.1037/met0000476>.
Author: Claudia van Borkulo [aut],
Sacha Epskamp [aut],
Payton Jones [aut],
Jonas Haslbeck [ctb],
Alex Millner [ctb],
Karoline Huth [ctb],
Don van den Bergh [cre]
Maintainer: Don van den Bergh <D.vandenBergh@tilburguniversity.edu>
Diff between NetworkComparisonTest versions 2.2.3 dated 2026-02-18 and 2.2.4 dated 2026-09-11
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 20 +++++++++++++------- NEWS.md | 12 +++++++++++- 4 files changed, 33 insertions(+), 17 deletions(-)
More information about NetworkComparisonTest at CRAN
Permanent link
Title: Statistical Tools for Evaluation of in Vitro Diagnostic Reagents
Description: Provides statistical workflows used in the evaluation of in vitro
diagnostic reagents. Facilities include method comparison, commutability
assessment, Bland-Altman and receiver operating characteristic analysis,
qualitative agreement, C5 and C95 estimation, precision and
variance-component analysis, linearity, interference, dilution and
spiking studies, high-dose hook assessment, measurement uncertainty,
reference-material bias, reference intervals, stability studies,
quality-control charts, curve fitting, analytical sensitivity, outlier and
normality assessment, and sample-size calculations. For methodological
details, see Bland and Altman (1986) <doi:10.1016/S0140-6736(86)90837-8>,
Passing and Bablok (1983) <doi:10.1515/cclm.1983.21.11.709>,
Linnet (1993) <doi:10.1093/clinchem/39.3.424>,
Hawkins and Kraker (2026) <doi:10.1093/jalm/jfaf183>,
Hanley and McNeil (1982) <doi:10.1148/radiology.143.1.7063747>,
Horn et al. (1998) <doi:10.1093/clinchem/44.3.62 [...truncated...]
Author: hiox-tech [cph, aut, cre]
Maintainer: hiox-tech <GeorgeBinDragon@outlook.com>
Diff between ivdtools versions 0.1.3 dated 2026-08-23 and 0.2.5 dated 2026-09-11
ivdtools-0.1.3/ivdtools/inst/WORDLIST |only ivdtools-0.1.3/ivdtools/man/lob_lod_loq.Rd |only ivdtools-0.1.3/ivdtools/man/tukey.Rd |only ivdtools-0.2.5/ivdtools/DESCRIPTION | 27 ivdtools-0.2.5/ivdtools/MD5 | 226 + ivdtools-0.2.5/ivdtools/NAMESPACE | 81 ivdtools-0.2.5/ivdtools/NEWS.md | 99 ivdtools-0.2.5/ivdtools/R/000-generics.R | 30 ivdtools-0.2.5/ivdtools/R/001-helpers.R | 162 ivdtools-0.2.5/ivdtools/R/002-ivdtools-package.R | 2 ivdtools-0.2.5/ivdtools/R/004-outliers-and-normal.R | 245 + ivdtools-0.2.5/ivdtools/R/005-fit.R | 977 ----- ivdtools-0.2.5/ivdtools/R/006-bottle-anova.R | 12 ivdtools-0.2.5/ivdtools/R/007-method-comparison.R | 1597 ++++++++- ivdtools-0.2.5/ivdtools/R/008-precision.R | 388 ++ ivdtools-0.2.5/ivdtools/R/009-qc.R | 57 ivdtools-0.2.5/ivdtools/R/010-qualitative-analysis.R | 17 ivdtools-0.2.5/ivdtools/R/011-reference-interval.R | 855 +++-- ivdtools-0.2.5/ivdtools/R/012-roc.R | 675 +++- ivdtools-0.2.5/ivdtools/R/013-sample-size.R | 1652 +++------- ivdtools-0.2.5/ivdtools/R/014-stability.R | 84 ivdtools-0.2.5/ivdtools/R/015-sensitivity.R | 1369 ++++++-- ivdtools-0.2.5/ivdtools/R/016-linearity.R |only ivdtools-0.2.5/ivdtools/R/017-interference.R |only ivdtools-0.2.5/ivdtools/R/018-c5-c95.R |only ivdtools-0.2.5/ivdtools/R/019-dilution.R |only ivdtools-0.2.5/ivdtools/R/020-uncertainty.R |only ivdtools-0.2.5/ivdtools/R/021-commutability.R |only ivdtools-0.2.5/ivdtools/inst/doc/introduction.R | 9 ivdtools-0.2.5/ivdtools/inst/doc/introduction.Rmd | 35 ivdtools-0.2.5/ivdtools/inst/doc/introduction.html | 239 - ivdtools-0.2.5/ivdtools/man/auc_compare.roc.Rd |only ivdtools-0.2.5/ivdtools/man/bias.mcr.Rd | 24 ivdtools-0.2.5/ivdtools/man/bland_altman.mcr.Rd | 38 ivdtools-0.2.5/ivdtools/man/c5_c95.Rd |only ivdtools-0.2.5/ivdtools/man/ci.precision.Rd | 7 ivdtools-0.2.5/ivdtools/man/commutability.Rd |only ivdtools-0.2.5/ivdtools/man/correlation.mcr.Rd | 2 ivdtools-0.2.5/ivdtools/man/describe.Rd | 45 ivdtools-0.2.5/ivdtools/man/dilution_recovery.Rd |only ivdtools-0.2.5/ivdtools/man/fit_equation.Rd | 23 ivdtools-0.2.5/ivdtools/man/hook_effect.Rd |only ivdtools-0.2.5/ivdtools/man/interference_dose_response.Rd |only ivdtools-0.2.5/ivdtools/man/interference_paired.Rd |only ivdtools-0.2.5/ivdtools/man/interference_patient.Rd |only ivdtools-0.2.5/ivdtools/man/interference_replicates.Rd |only ivdtools-0.2.5/ivdtools/man/linearity.Rd |only ivdtools-0.2.5/ivdtools/man/linearity_endpoints.Rd |only ivdtools-0.2.5/ivdtools/man/linearity_panel.Rd |only ivdtools-0.2.5/ivdtools/man/linearity_replicates.Rd |only ivdtools-0.2.5/ivdtools/man/list_equation.Rd | 4 ivdtools-0.2.5/ivdtools/man/mcr.Rd | 33 ivdtools-0.2.5/ivdtools/man/normal.precision.Rd | 5 ivdtools-0.2.5/ivdtools/man/outlier.mcr.Rd | 4 ivdtools-0.2.5/ivdtools/man/plot.arrhenius.Rd |only ivdtools-0.2.5/ivdtools/man/plot.c5_c95.Rd |only ivdtools-0.2.5/ivdtools/man/plot.commutability_result.Rd |only ivdtools-0.2.5/ivdtools/man/plot.dilution_recovery.Rd |only ivdtools-0.2.5/ivdtools/man/plot.hook_effect.Rd |only ivdtools-0.2.5/ivdtools/man/plot.interference_dose_response.Rd |only ivdtools-0.2.5/ivdtools/man/plot.interference_paired.Rd |only ivdtools-0.2.5/ivdtools/man/plot.interference_patient.Rd |only ivdtools-0.2.5/ivdtools/man/plot.linearity.Rd |only ivdtools-0.2.5/ivdtools/man/plot.normal_test.Rd |only ivdtools-0.2.5/ivdtools/man/plot.qc_chart.Rd |only ivdtools-0.2.5/ivdtools/man/plot.reference_interval.Rd | 6 ivdtools-0.2.5/ivdtools/man/plot.roc.Rd | 33 ivdtools-0.2.5/ivdtools/man/plot.sensitivity.Rd |only ivdtools-0.2.5/ivdtools/man/plot.spike_recovery.Rd |only ivdtools-0.2.5/ivdtools/man/plot.stability_bias.Rd |only ivdtools-0.2.5/ivdtools/man/plot.stability_regression.Rd |only ivdtools-0.2.5/ivdtools/man/plot.stability_time.Rd |only ivdtools-0.2.5/ivdtools/man/plot.uncertainty_budget.Rd |only ivdtools-0.2.5/ivdtools/man/plot.uncertainty_propagation.Rd |only ivdtools-0.2.5/ivdtools/man/plot.uncertainty_traceability.Rd |only ivdtools-0.2.5/ivdtools/man/plot.youden_plot.Rd |only ivdtools-0.2.5/ivdtools/man/predict.interference_dose_response.Rd |only ivdtools-0.2.5/ivdtools/man/predict.mcr.Rd | 38 ivdtools-0.2.5/ivdtools/man/print.arrhenius.Rd |only ivdtools-0.2.5/ivdtools/man/print.c5_c95.Rd |only ivdtools-0.2.5/ivdtools/man/print.commutability_result.Rd |only ivdtools-0.2.5/ivdtools/man/print.compare_equation.Rd |only ivdtools-0.2.5/ivdtools/man/print.cutpoint_split.Rd |only ivdtools-0.2.5/ivdtools/man/print.dilution_recovery.Rd |only ivdtools-0.2.5/ivdtools/man/print.factor_split.Rd |only ivdtools-0.2.5/ivdtools/man/print.hook_effect.Rd |only ivdtools-0.2.5/ivdtools/man/print.interference_dose_response.Rd |only ivdtools-0.2.5/ivdtools/man/print.interference_paired.Rd |only ivdtools-0.2.5/ivdtools/man/print.interference_patient.Rd |only ivdtools-0.2.5/ivdtools/man/print.interference_replicates.Rd |only ivdtools-0.2.5/ivdtools/man/print.linearity.Rd |only ivdtools-0.2.5/ivdtools/man/print.mkt.Rd |only ivdtools-0.2.5/ivdtools/man/print.normal_test.Rd |only ivdtools-0.2.5/ivdtools/man/print.outliers_test.Rd |only ivdtools-0.2.5/ivdtools/man/print.precision_normal.Rd | 4 ivdtools-0.2.5/ivdtools/man/print.qc_chart.Rd |only ivdtools-0.2.5/ivdtools/man/print.reference_bias.Rd |only ivdtools-0.2.5/ivdtools/man/print.roc_auc_comparison.Rd |only ivdtools-0.2.5/ivdtools/man/print.sample_size_bland_altman.Rd |only ivdtools-0.2.5/ivdtools/man/print.sample_size_proportion.Rd |only ivdtools-0.2.5/ivdtools/man/print.sample_size_proportion_ci.Rd |only ivdtools-0.2.5/ivdtools/man/print.sensitivity.Rd |only ivdtools-0.2.5/ivdtools/man/print.sensitivity_design.Rd |only ivdtools-0.2.5/ivdtools/man/print.spike_concentration.Rd |only ivdtools-0.2.5/ivdtools/man/print.spike_recovery.Rd |only ivdtools-0.2.5/ivdtools/man/print.stability_bias.Rd |only ivdtools-0.2.5/ivdtools/man/print.stability_plan.Rd |only ivdtools-0.2.5/ivdtools/man/print.stability_regression.Rd |only ivdtools-0.2.5/ivdtools/man/print.stability_time.Rd |only ivdtools-0.2.5/ivdtools/man/print.uncertainty_budget.Rd |only ivdtools-0.2.5/ivdtools/man/print.uncertainty_characterization.Rd |only ivdtools-0.2.5/ivdtools/man/print.uncertainty_component.Rd |only ivdtools-0.2.5/ivdtools/man/print.uncertainty_homogeneity.Rd |only ivdtools-0.2.5/ivdtools/man/print.uncertainty_iqc.Rd |only ivdtools-0.2.5/ivdtools/man/print.uncertainty_propagation.Rd |only ivdtools-0.2.5/ivdtools/man/print.uncertainty_stability.Rd |only ivdtools-0.2.5/ivdtools/man/print.uncertainty_traceability.Rd |only ivdtools-0.2.5/ivdtools/man/print.youden_plot.Rd |only ivdtools-0.2.5/ivdtools/man/raw_to_table.Rd | 3 ivdtools-0.2.5/ivdtools/man/reference_bias.Rd |only ivdtools-0.2.5/ivdtools/man/reference_interval.Rd | 69 ivdtools-0.2.5/ivdtools/man/regression.mcr.Rd | 60 ivdtools-0.2.5/ivdtools/man/replicate_to_mean.Rd | 10 ivdtools-0.2.5/ivdtools/man/report.precision.Rd |only ivdtools-0.2.5/ivdtools/man/sample_size_bland_altman.Rd | 49 ivdtools-0.2.5/ivdtools/man/sample_size_proportion.Rd | 98 ivdtools-0.2.5/ivdtools/man/sample_size_proportion_ci.Rd | 60 ivdtools-0.2.5/ivdtools/man/sensitivity_design.Rd |only ivdtools-0.2.5/ivdtools/man/sensitivity_lob.Rd |only ivdtools-0.2.5/ivdtools/man/sensitivity_lod.Rd |only ivdtools-0.2.5/ivdtools/man/sensitivity_loq.Rd |only ivdtools-0.2.5/ivdtools/man/sensitivity_verify.Rd |only ivdtools-0.2.5/ivdtools/man/spike_concentration.Rd |only ivdtools-0.2.5/ivdtools/man/spike_recovery.Rd |only ivdtools-0.2.5/ivdtools/man/split_by_cutpoints.Rd |only ivdtools-0.2.5/ivdtools/man/split_by_factors.Rd |only ivdtools-0.2.5/ivdtools/man/summary.commutability_result.Rd |only ivdtools-0.2.5/ivdtools/man/uncertainty_characterization.Rd |only ivdtools-0.2.5/ivdtools/man/uncertainty_combine.Rd |only ivdtools-0.2.5/ivdtools/man/uncertainty_homogeneity.Rd |only ivdtools-0.2.5/ivdtools/man/uncertainty_iqc.Rd |only ivdtools-0.2.5/ivdtools/man/uncertainty_propagate.Rd |only ivdtools-0.2.5/ivdtools/man/uncertainty_stability.Rd |only ivdtools-0.2.5/ivdtools/man/uncertainty_traceability.Rd |only ivdtools-0.2.5/ivdtools/man/uncertainty_type_a.Rd |only ivdtools-0.2.5/ivdtools/man/uncertainty_type_b.Rd |only ivdtools-0.2.5/ivdtools/man/variance.precision.Rd | 17 ivdtools-0.2.5/ivdtools/man/vc.precision.Rd |only ivdtools-0.2.5/ivdtools/tests/testthat/Rplots.pdf |only ivdtools-0.2.5/ivdtools/tests/testthat/fixtures |only ivdtools-0.2.5/ivdtools/tests/testthat/helper-testing.R | 10 ivdtools-0.2.5/ivdtools/tests/testthat/test-api-contracts.R | 48 ivdtools-0.2.5/ivdtools/tests/testthat/test-c5-c95.R |only ivdtools-0.2.5/ivdtools/tests/testthat/test-commutability.R |only ivdtools-0.2.5/ivdtools/tests/testthat/test-data-splitting.R |only ivdtools-0.2.5/ivdtools/tests/testthat/test-dilution.R |only ivdtools-0.2.5/ivdtools/tests/testthat/test-fit.R | 39 ivdtools-0.2.5/ivdtools/tests/testthat/test-interference.R |only ivdtools-0.2.5/ivdtools/tests/testthat/test-linearity.R |only ivdtools-0.2.5/ivdtools/tests/testthat/test-mcr.R | 601 +++ ivdtools-0.2.5/ivdtools/tests/testthat/test-precision.R | 136 ivdtools-0.2.5/ivdtools/tests/testthat/test-properties.R | 4 ivdtools-0.2.5/ivdtools/tests/testthat/test-qualitative.R | 22 ivdtools-0.2.5/ivdtools/tests/testthat/test-reference-bias.R |only ivdtools-0.2.5/ivdtools/tests/testthat/test-reference-outliers.R | 182 + ivdtools-0.2.5/ivdtools/tests/testthat/test-roc.R | 163 ivdtools-0.2.5/ivdtools/tests/testthat/test-sample-size.R | 297 + ivdtools-0.2.5/ivdtools/tests/testthat/test-sensitivity.R | 551 +-- ivdtools-0.2.5/ivdtools/tests/testthat/test-uncertainty.R |only ivdtools-0.2.5/ivdtools/vignettes/introduction.Rmd | 35 170 files changed, 7668 insertions(+), 3890 deletions(-)
Title: Interface to the 'HDF5' Binary Data Format
Description: 'HDF5' is a data model, library and file format for storing
and managing large amounts of data. This package provides a nearly
feature complete, object oriented wrapper for the 'HDF5' API
<https://support.hdfgroup.org/documentation/hdf5/latest/_r_m.html> using R6 classes.
Additionally, functionality is added so that 'HDF5' objects behave very
similar to their corresponding R counterparts.
Author: Holger Hoefling [aut, cre],
Mario Annau [aut],
Novartis Institute for BioMedical Research [cph]
Maintainer: Holger Hoefling <hhoeflin@gmail.com>
Diff between hdf5r versions 1.3.15 dated 2026-09-07 and 1.3.16 dated 2026-09-11
DESCRIPTION | 6 +-- MD5 | 12 +++--- NEWS.md | 4 ++ build/vignette.rds |binary configure | 100 ++++++++++++++++++++++++++++++++++++++++++++++++++++ configure.ac | 24 ++++++++++++ inst/doc/hdf5r.html | 2 - 7 files changed, 138 insertions(+), 10 deletions(-)
Title: Weather and Climate Inputs for 'SWAT'
Description: Provides workflows to prepare weather and climate time series from
gridded and station data for 'SWAT' ('Soil and Water Assessment Tool').
Supports data extraction, aggregation, interpolation, quality control, unit
conversion, and export of per-location model input files. For the underlying
model, see Arnold et al. (1998) "Large Area Hydrologic Modeling and
Assessment Part I: Model Development"
<doi:10.1111/j.1752-1688.1998.tb05961.x>.
Author: Reginal Exavier [aut, cre] ,
Fernando Shinji Kawakubo [aut] ,
Peter Zeilhofer [aut]
Maintainer: Reginal Exavier <reginalexavier@rocketmail.com>
Diff between wcswatin versions 0.1.1 dated 2026-07-19 and 0.2.0 dated 2026-09-11
wcswatin-0.1.1/wcswatin/man/figures/wcswatin_flowchart150222.png |only wcswatin-0.2.0/wcswatin/DESCRIPTION | 13 - wcswatin-0.2.0/wcswatin/MD5 | 32 +- wcswatin-0.2.0/wcswatin/NAMESPACE | 22 + wcswatin-0.2.0/wcswatin/NEWS.md | 12 + wcswatin-0.2.0/wcswatin/R/generics_and_methods.R | 36 --- wcswatin-0.2.0/wcswatin/R/trend_surface_interpolation.R | 25 -- wcswatin-0.2.0/wcswatin/README.md | 48 ++-- wcswatin-0.2.0/wcswatin/inst/doc/wcswatin.Rmd | 117 ++++++++++ wcswatin-0.2.0/wcswatin/inst/doc/wcswatin.html | 107 +++++++++ wcswatin-0.2.0/wcswatin/man/figures/wcswatin-workflow-compact.png |only wcswatin-0.2.0/wcswatin/man/figures/wcswatin-workflow.png |only wcswatin-0.2.0/wcswatin/man/input_raster.Rd | 12 - wcswatin-0.2.0/wcswatin/man/ts_to_area.Rd | 2 wcswatin-0.2.0/wcswatin/tests/testthat/test-generics_and_methods.R | 37 --- wcswatin-0.2.0/wcswatin/tests/testthat/test-raster_reference_extract.R | 38 --- wcswatin-0.2.0/wcswatin/tests/testthat/test-trend_surface_interpolation.R | 18 + wcswatin-0.2.0/wcswatin/vignettes/figures |only wcswatin-0.2.0/wcswatin/vignettes/wcswatin.Rmd | 117 ++++++++++ 19 files changed, 440 insertions(+), 196 deletions(-)
Title: Visualization and Imputation of Missing Values
Description: Provides methods for imputation and visualization of
missing values. It includes graphical tools to explore the amount, structure
and patterns of missing and/or imputed values, supporting exploratory
data analysis and helping to investigate potential missingness mechanisms
(details in Alfons, Templ and Filzmoser, <doi:10.1007/s11634-011-0102-y>).
The quality of imputations can be assessed visually using a wide range of
univariate, bivariate and multivariate plots.
The package further provides several imputation methods,
including efficient implementations of k-nearest neighbour and hot-deck
imputation (Kowarik and Templ 2013, <doi:10.18637/jss.v074.i07>),
iterative robust model-based multiple
imputation (Templ 2011, <doi:10.1016/j.csda.2011.04.012>;
Templ 2023, <doi:10.3390/math11122729>), and machine learning–based
approaches such as robust GAM-based multiple imputation
(Templ 2024, <doi:10.1007/s11222-024-10429-1>) as well as random forest
and gradient b [...truncated...]
Author: Matthias Templ [aut, cre],
Alexander Kowarik [aut] ,
Andreas Alfons [aut],
Johannes Gussenbauer [aut],
Nina Niederhametner [aut],
Eileen Vattheuer [aut],
Gregor de Cillia [aut],
Bernd Prantner [ctb],
Wolfgang Rannetbauer [aut]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between VIM versions 7.3.0 dated 2026-09-02 and 7.3.1 dated 2026-09-11
VIM-7.3.0/VIM/inst/doc/vimpute-mi.R |only VIM-7.3.0/VIM/inst/doc/vimpute.R |only VIM-7.3.0/VIM/tests/test_imputeRobust.R |only VIM-7.3.1/VIM/DESCRIPTION | 18 VIM-7.3.1/VIM/MD5 | 190 - VIM-7.3.1/VIM/NAMESPACE | 24 VIM-7.3.1/VIM/NEWS.md | 25 VIM-7.3.1/VIM/R/VIM-package.R | 10 VIM-7.3.1/VIM/R/helper_vimpute.R | 182 - VIM-7.3.1/VIM/R/rangerImpute.R | 8 VIM-7.3.1/VIM/R/vimpute.R | 129 VIM-7.3.1/VIM/R/vimpute_spec.R | 7 VIM-7.3.1/VIM/R/vimpute_tune_control.R | 1 VIM-7.3.1/VIM/R/xgboostImpute.R | 10 VIM-7.3.1/VIM/build/vignette.rds |binary VIM-7.3.1/VIM/data/Animals_na.rda |binary VIM-7.3.1/VIM/data/SBS5242.rda |binary VIM-7.3.1/VIM/data/bcancer.rda |binary VIM-7.3.1/VIM/data/brittleness.rda |binary VIM-7.3.1/VIM/data/chorizonDL.rda |binary VIM-7.3.1/VIM/data/colic.rda |binary VIM-7.3.1/VIM/data/collisions.rda |binary VIM-7.3.1/VIM/data/diabetes.rda |binary VIM-7.3.1/VIM/data/food.rda |binary VIM-7.3.1/VIM/data/kola.background.rda |binary VIM-7.3.1/VIM/data/lse_synthetic.rda |binary VIM-7.3.1/VIM/data/lse_synthetic_rules.rda |binary VIM-7.3.1/VIM/data/pulplignin.rda |binary VIM-7.3.1/VIM/data/sleep.rda |binary VIM-7.3.1/VIM/data/tao.rda |binary VIM-7.3.1/VIM/data/testdata.RData |binary VIM-7.3.1/VIM/data/toydataMiss.rda |binary VIM-7.3.1/VIM/data/wine.rda |binary VIM-7.3.1/VIM/inst/doc/VIM.R | 16 VIM-7.3.1/VIM/inst/doc/VIM.Rmd | 18 VIM-7.3.1/VIM/inst/doc/VisualImp.R | 16 VIM-7.3.1/VIM/inst/doc/VisualImp.Rmd | 18 VIM-7.3.1/VIM/inst/doc/VisualImp.html | 6 VIM-7.3.1/VIM/inst/doc/donorImp.html | 4 VIM-7.3.1/VIM/inst/doc/modelImp.R | 16 VIM-7.3.1/VIM/inst/doc/modelImp.Rmd | 18 VIM-7.3.1/VIM/inst/doc/vimpute-mi.Rmd | 95 VIM-7.3.1/VIM/inst/doc/vimpute-mi.html | 29 VIM-7.3.1/VIM/inst/doc/vimpute-restricted.R | 7 VIM-7.3.1/VIM/inst/doc/vimpute-restricted.Rmd | 7 VIM-7.3.1/VIM/inst/doc/vimpute.Rmd | 348 -- VIM-7.3.1/VIM/inst/doc/vimpute.html | 1317 ---------- VIM-7.3.1/VIM/inst/doc/xgboostImpute.R | 16 VIM-7.3.1/VIM/inst/doc/xgboostImpute.Rmd | 18 VIM-7.3.1/VIM/inst/doc/xgboostImpute.html | 4 VIM-7.3.1/VIM/inst/tinytest/test_IRMI_ordered.R | 4 VIM-7.3.1/VIM/inst/tinytest/test_cellwise_df_interface.R | 4 VIM-7.3.1/VIM/inst/tinytest/test_makeMissing.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_overimpute.R | 13 VIM-7.3.1/VIM/inst/tinytest/test_rangerImpute.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_regressionImp.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_regressionImp_lm.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimmi.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimmi_bridge.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimmi_complete_masking.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute.R | 13 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_considered_columns.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_convergence.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_fallback.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_issue_98.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_method_list.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_mi_properness.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_model_error.R | 13 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_ordered_factor.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_predictors.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_registry.R | 13 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_restricted.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_restricted_lse.R | 13 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_return_type.R | 13 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_seed.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_spec.R | 13 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_true_pmm.R | 4 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_tune.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_tune_control.R | 13 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_tune_once.R | 13 VIM-7.3.1/VIM/inst/tinytest/test_vimpute_uncert_default.R | 9 VIM-7.3.1/VIM/inst/tinytest/test_wrapper_hyperparams.R | 13 VIM-7.3.1/VIM/inst/tinytest/test_xgboostImpute.R | 9 VIM-7.3.1/VIM/man/rangerImpute.Rd | 8 VIM-7.3.1/VIM/man/xgboostImpute.Rd | 10 VIM-7.3.1/VIM/vignettes/VIM.Rmd | 18 VIM-7.3.1/VIM/vignettes/VisualImp.Rmd | 18 VIM-7.3.1/VIM/vignettes/figures/vimpute-mi-unnamed-chunk-10-1.png |only VIM-7.3.1/VIM/vignettes/figures/vimpute-mi-unnamed-chunk-5-1.png |only VIM-7.3.1/VIM/vignettes/figures/vimpute-mi-unnamed-chunk-6-1.png |only VIM-7.3.1/VIM/vignettes/figures/vimpute-setup_2-1.png |only VIM-7.3.1/VIM/vignettes/figures/vimpute-unnamed-chunk-10-1.png |only VIM-7.3.1/VIM/vignettes/figures/vimpute-unnamed-chunk-12-1.png |only VIM-7.3.1/VIM/vignettes/figures/vimpute-unnamed-chunk-28-1.png |only VIM-7.3.1/VIM/vignettes/figures/vimpute-unnamed-chunk-3-1.png |only VIM-7.3.1/VIM/vignettes/figures/vimpute-unnamed-chunk-31-1.png |only VIM-7.3.1/VIM/vignettes/figures/vimpute-unnamed-chunk-33-1.png |only VIM-7.3.1/VIM/vignettes/figures/vimpute-unnamed-chunk-6-1.png |only VIM-7.3.1/VIM/vignettes/modelImp.Rmd | 18 VIM-7.3.1/VIM/vignettes/vimpute-mi.Rmd | 95 VIM-7.3.1/VIM/vignettes/vimpute-restricted.Rmd | 7 VIM-7.3.1/VIM/vignettes/vimpute.Rmd | 348 -- VIM-7.3.1/VIM/vignettes/xgboostImpute.Rmd | 18 103 files changed, 1371 insertions(+), 2048 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' family of packages
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 3.2-4 dated 2026-07-16 and 3.2-5 dated 2026-09-11
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NEWS | 16 ++++++++++++++++ R/indices.R | 32 +++++++++++++++----------------- inst/doc/packagesizes.txt | 1 + inst/info/packagesizes.txt | 1 + man/logicalIndex.Rd |only man/macros/defns.Rd | 30 +++++++++++++++++++++++------- man/positiveIndex.Rd |only man/spatstat.utils-internal.Rd | 6 +----- 10 files changed, 70 insertions(+), 40 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Power Analysis for Generalised Linear Mixed Models by Simulation
Description: Calculate power for generalised linear mixed models, using
simulation. Designed to work with models fit using the 'lme4' package.
Described in Green and MacLeod, 2016 <doi:10.1111/2041-210X.12504>.
Author: Peter Green [aut, cre] ,
Catriona MacLeod [aut],
Phillip Alday [ctb]
Maintainer: Peter Green <simr.peter@gmail.com>
Diff between simr versions 1.0.10 dated 2026-08-01 and 1.0.11 dated 2026-09-11
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 5 +++++ R/binomial.R | 15 ++++++++++++++- R/new.R | 2 +- inst/doc/examples.html | 8 ++++---- tests/testthat/test_new.R | 21 +++++++++++++++++++++ 7 files changed, 55 insertions(+), 16 deletions(-)
Title: Inflators for Australian Policy Analysis
Description: Using Australian Bureau of Statistics indices, provides functions
that convert historical, nominal statistics to real, contemporary values
without worrying about date input quality, performance, or the ABS catalogue.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between grattanInflators versions 0.5.7 dated 2026-01-12 and 0.6.0 dated 2026-09-11
grattanInflators-0.5.7/grattanInflators/inst/extdata/date_last_updated.rds |only grattanInflators-0.6.0/grattanInflators/DESCRIPTION | 6 grattanInflators-0.6.0/grattanInflators/MD5 | 124 - grattanInflators-0.6.0/grattanInflators/NAMESPACE | 25 grattanInflators-0.6.0/grattanInflators/NEWS.md | 119 + grattanInflators-0.6.0/grattanInflators/R/Inflate.R | 429 +++ grattanInflators-0.6.0/grattanInflators/R/YearMonthSplit.R | 43 grattanInflators-0.6.0/grattanInflators/R/awe_inflator.R |only grattanInflators-0.6.0/grattanInflators/R/check_input.R | 36 grattanInflators-0.6.0/grattanInflators/R/cpi_inflator.R | 131 - grattanInflators-0.6.0/grattanInflators/R/custom-series.R | 180 + grattanInflators-0.6.0/grattanInflators/R/download_data.R | 247 +- grattanInflators-0.6.0/grattanInflators/R/envir.R | 31 grattanInflators-0.6.0/grattanInflators/R/fast_as_idate.R | 108 grattanInflators-0.6.0/grattanInflators/R/grattanInflators-package.R | 1 grattanInflators-0.6.0/grattanInflators/R/lf_inflator.R | 29 grattanInflators-0.6.0/grattanInflators/R/wage_inflator.R | 29 grattanInflators-0.6.0/grattanInflators/README.md | 184 - grattanInflators-0.6.0/grattanInflators/inst/extdata/A128473239F.tsv |only grattanInflators-0.6.0/grattanInflators/inst/extdata/A128478317T.tsv |only grattanInflators-0.6.0/grattanInflators/inst/extdata/A128481587A.tsv |only grattanInflators-0.6.0/grattanInflators/inst/extdata/A2325846C.tsv | 608 ++--- grattanInflators-0.6.0/grattanInflators/inst/extdata/A2603609J.tsv | 17 grattanInflators-0.6.0/grattanInflators/inst/extdata/A2713849C.tsv | 39 grattanInflators-0.6.0/grattanInflators/inst/extdata/A2713851R.tsv | 43 grattanInflators-0.6.0/grattanInflators/inst/extdata/A3604506F.tsv | 177 - grattanInflators-0.6.0/grattanInflators/inst/extdata/A3604509L.tsv | 470 +--- grattanInflators-0.6.0/grattanInflators/inst/extdata/A84423043C.tsv | 1115 +++++----- grattanInflators-0.6.0/grattanInflators/inst/extdata/A84423085A.tsv | 193 + grattanInflators-0.6.0/grattanInflators/inst/extdata/A84423127L.tsv | 1115 +++++----- grattanInflators-0.6.0/grattanInflators/inst/extdata/A84990044V.tsv |only grattanInflators-0.6.0/grattanInflators/inst/extdata/A84990050R.tsv |only grattanInflators-0.6.0/grattanInflators/inst/extdata/A84998729F.tsv |only grattanInflators-0.6.0/grattanInflators/inst/extdata/A84998735A.tsv |only grattanInflators-0.6.0/grattanInflators/inst/extdata/A85002148L.tsv |only grattanInflators-0.6.0/grattanInflators/inst/extdata/A85002157R.tsv |only grattanInflators-0.6.0/grattanInflators/inst/extdata/cpi.tsv | 592 ++--- grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_YearMonthSplit.R | 6 grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_awe_inflator.R |only grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_cpi_inflator.R | 201 - grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_custom_series.R |only grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_download_data.R | 56 grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_fast_as_idate.R | 37 grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_format_idate.R | 19 grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_fy_semantics.R |only grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_grattanInflators.R | 8 grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_guess_format.R | 48 grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_index_validation.R |only grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_inflator_annual.R | 140 - grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_invariants.R |only grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_lf_inflator.R | 1 grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_native_safety.R |only grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_review_followup.R |only grattanInflators-0.6.0/grattanInflators/inst/tinytest/test_review_regressions.R |only grattanInflators-0.6.0/grattanInflators/man/Inflate.Rd | 42 grattanInflators-0.6.0/grattanInflators/man/abs-conn.Rd | 21 grattanInflators-0.6.0/grattanInflators/man/awe_inflator.Rd |only grattanInflators-0.6.0/grattanInflators/man/cpi_inflator.Rd | 32 grattanInflators-0.6.0/grattanInflators/man/custom-series.Rd | 8 grattanInflators-0.6.0/grattanInflators/man/fast_as_idate.Rd | 98 grattanInflators-0.6.0/grattanInflators/man/lf_inflator.Rd | 142 - grattanInflators-0.6.0/grattanInflators/man/wage_inflator.Rd | 128 - grattanInflators-0.6.0/grattanInflators/src/C_YearMonthSplit.c | 2 grattanInflators-0.6.0/grattanInflators/src/C_multiply.c | 3 grattanInflators-0.6.0/grattanInflators/src/SEXP2YearMonth.c | 182 + grattanInflators-0.6.0/grattanInflators/src/check_input.c | 315 ++ grattanInflators-0.6.0/grattanInflators/src/cpi.c | 118 - grattanInflators-0.6.0/grattanInflators/src/grattanInflator.h | 40 grattanInflators-0.6.0/grattanInflators/src/idate_YearMonth.c | 493 ++-- grattanInflators-0.6.0/grattanInflators/src/inflate.c | 201 - grattanInflators-0.6.0/grattanInflators/src/init.c | 6 grattanInflators-0.6.0/grattanInflators/src/minmaxDate.c | 66 grattanInflators-0.6.0/grattanInflators/tests/tinytest.R | 7 73 files changed, 4969 insertions(+), 3542 deletions(-)
More information about grattanInflators at CRAN
Permanent link
Title: CCMN and Other Normalization Methods for Metabolomics Data
Description: Implements the Cross-contribution Compensating Multiple
standard Normalization (CCMN) method described in Redestig et
al. (2009) Analytical Chemistry <doi:10.1021/ac901143w>
and other normalization algorithms.
Author: Henning Redestig [aut, cre]
Maintainer: Henning Redestig <henning.red@gmail.com>
Diff between crmn versions 0.0.21 dated 2020-02-10 and 0.0.22 dated 2026-09-11
crmn-0.0.21/crmn/README |only crmn-0.0.21/crmn/man/crmn.Rd |only crmn-0.0.22/crmn/DESCRIPTION | 19 +++++++++++-------- crmn-0.0.22/crmn/MD5 | 35 +++++++++++++++++------------------ crmn-0.0.22/crmn/NAMESPACE | 28 ++++++++++++++++------------ crmn-0.0.22/crmn/NEWS | 2 ++ crmn-0.0.22/crmn/R/crmn-package.R | 5 +---- crmn-0.0.22/crmn/R/generic.R | 3 +-- crmn-0.0.22/crmn/R/misc.R | 6 ++---- crmn-0.0.22/crmn/R/norm.R | 4 ++-- crmn-0.0.22/crmn/build/vignette.rds |binary crmn-0.0.22/crmn/data/mix.rda |binary crmn-0.0.22/crmn/inst/CITATION | 22 ++++++++++++++-------- crmn-0.0.22/crmn/inst/doc/crmn.R | 2 -- crmn-0.0.22/crmn/inst/doc/crmn.Rnw | 5 ++--- crmn-0.0.22/crmn/inst/doc/crmn.pdf |binary crmn-0.0.22/crmn/man/crmn-package.Rd |only crmn-0.0.22/crmn/man/normFit.Rd | 2 +- crmn-0.0.22/crmn/man/normPred.Rd | 2 +- crmn-0.0.22/crmn/vignettes/crmn.Rnw | 5 ++--- 20 files changed, 72 insertions(+), 68 deletions(-)
Title: Generalized Discrimination Score
Description: This is an implementation of the Generalized Discrimination Score
(also known as Two Alternatives Forced Choice Score, 2AFC) for various
representations of forecasts and verifying observations. The Generalized
Discrimination Score is a generic forecast verification framework which
can be applied to any of the following verification contexts: dichotomous,
polychotomous (ordinal and nominal), continuous, probabilistic, and ensemble.
A comprehensive description of the Generalized Discrimination Score, including
all equations used in this package, is provided by Mason and Weigel (2009).
Author: Andreas Weigel [aut],
MeteoSwiss [cph],
Jonas Bhend [cre, aut]
Maintainer: Jonas Bhend <jonas.bhend@meteoswiss.ch>
Diff between afc versions 1.4.0 dated 2017-05-18 and 1.5.0 dated 2026-09-11
afc-1.4.0/afc/NEWS |only afc-1.5.0/afc/DESCRIPTION | 25 +- afc-1.5.0/afc/MD5 | 119 ++++++----- afc-1.5.0/afc/NEWS.md |only afc-1.5.0/afc/R/afc-package.R | 205 ++++++++++++-------- afc-1.5.0/afc/R/afc.R | 319 ++++++++------------------------ afc-1.5.0/afc/R/afc.cc.R | 40 +--- afc-1.5.0/afc/R/afc.ce.R | 52 +---- afc-1.5.0/afc/R/afc.dc.R | 48 +--- afc-1.5.0/afc/R/afc.dd.R | 47 +--- afc-1.5.0/afc/R/afc.de.R | 47 +--- afc-1.5.0/afc/R/afc.dm.R | 53 +---- afc-1.5.0/afc/R/afc.dp.R | 54 +---- afc-1.5.0/afc/R/afc.mc.R | 47 +--- afc-1.5.0/afc/R/afc.me.R | 48 +--- afc-1.5.0/afc/R/afc.mm.R | 50 +---- afc-1.5.0/afc/R/afc.mp.R | 50 +---- afc-1.5.0/afc/R/afc.nn.R | 56 +---- afc-1.5.0/afc/R/afc.np.R | 49 +--- afc-1.5.0/afc/R/rank.ensembles.R | 41 ---- afc-1.5.0/afc/R/utils.R |only afc-1.5.0/afc/README.md |only afc-1.5.0/afc/data/cnrm.nino34.cc.RData |binary afc-1.5.0/afc/data/cnrm.nino34.ce.RData |binary afc-1.5.0/afc/data/cnrm.nino34.dc.RData |binary afc-1.5.0/afc/data/cnrm.nino34.dd.RData |binary afc-1.5.0/afc/data/cnrm.nino34.de.RData |binary afc-1.5.0/afc/data/cnrm.nino34.dm.RData |binary afc-1.5.0/afc/data/cnrm.nino34.dp.RData |binary afc-1.5.0/afc/data/cnrm.nino34.mc.RData |binary afc-1.5.0/afc/data/cnrm.nino34.me.RData |binary afc-1.5.0/afc/data/cnrm.nino34.mm.RData |binary afc-1.5.0/afc/data/cnrm.nino34.mp.RData |binary afc-1.5.0/afc/man/afc-package.Rd | 6 afc-1.5.0/afc/man/afc.Rd | 104 +--------- afc-1.5.0/afc/man/afc.cc.Rd | 12 - afc-1.5.0/afc/man/afc.ce.Rd | 22 -- afc-1.5.0/afc/man/afc.dc.Rd | 16 - afc-1.5.0/afc/man/afc.dd.Rd | 16 - afc-1.5.0/afc/man/afc.de.Rd | 16 - afc-1.5.0/afc/man/afc.dm.Rd | 16 - afc-1.5.0/afc/man/afc.dp.Rd | 18 - afc-1.5.0/afc/man/afc.mc.Rd | 14 - afc-1.5.0/afc/man/afc.me.Rd | 14 - afc-1.5.0/afc/man/afc.mm.Rd | 16 - afc-1.5.0/afc/man/afc.mp.Rd | 14 - afc-1.5.0/afc/man/afc.nn.Rd | 20 -- afc-1.5.0/afc/man/afc.np.Rd | 16 - afc-1.5.0/afc/man/cnrm.nino34.cc.Rd | 11 - afc-1.5.0/afc/man/cnrm.nino34.ce.Rd | 12 - afc-1.5.0/afc/man/cnrm.nino34.dc.Rd | 12 - afc-1.5.0/afc/man/cnrm.nino34.dd.Rd | 13 + afc-1.5.0/afc/man/cnrm.nino34.de.Rd | 13 + afc-1.5.0/afc/man/cnrm.nino34.dm.Rd | 13 + afc-1.5.0/afc/man/cnrm.nino34.dp.Rd | 13 + afc-1.5.0/afc/man/cnrm.nino34.mc.Rd | 12 - afc-1.5.0/afc/man/cnrm.nino34.me.Rd | 13 + afc-1.5.0/afc/man/cnrm.nino34.mm.Rd | 13 + afc-1.5.0/afc/man/cnrm.nino34.mp.Rd | 13 + afc-1.5.0/afc/man/rank.ensembles.Rd | 5 afc-1.5.0/afc/tests |only 61 files changed, 694 insertions(+), 1119 deletions(-)
Title: Spatial Tessellation, Modeling, and Cross-Validation Toolkit
Description: Constructs analysis regions from the distribution of the data
itself, as an alternative to aggregating onto administrative boundaries
that were drawn for unrelated purposes. Seeds and builds Voronoi,
Delaunay, hexagonal and square tessellations with reproducible
identifiers, selects a cell count from the spatial structure of the
observations, assigns features to cells, and aggregates to cell level
with optional design-effect corrections so that standard errors account
for within-cell autocorrelation. Also manages coordinate reference
systems. Fits geographically weighted regression
(via 'GWmodel'; Lu et al. (2014) <doi:10.1080/10095020.2014.917453>),
Bayesian spatial Gaussian process regression (via 'brms', using the
Hilbert space approximation of Riutort-Mayol et al. (2023)
<doi:10.1007/s11222-022-10167-2>) and random forests (via 'ranger', with
the permutation importance of Strobl et al. (2007)
<doi:10.1186/1471-2105-8-25>), each behind one S3 class with consistent
[...truncated...]
Author: Justin Chase [aut, cre, cph]
Maintainer: Justin Chase <jchase.msu@gmail.com>
Diff between spatialkit versions 1.0.0 dated 2026-08-07 and 2.0.0 dated 2026-09-11
spatialkit-1.0.0/spatialkit/man/dot-bbox_center_sfc.Rd |only spatialkit-1.0.0/spatialkit/man/evaluate_models.Rd |only spatialkit-1.0.0/spatialkit/man/evaluate_models_cv.Rd |only spatialkit-1.0.0/spatialkit/tests/testthat/test-coerce-multipoint.R |only spatialkit-1.0.0/spatialkit/tests/testthat/test-core.R |only spatialkit-1.0.0/spatialkit/tests/testthat/test-fixes-misc.R |only spatialkit-1.0.0/spatialkit/tests/testthat/test-fixes-round2.R |only spatialkit-2.0.0/spatialkit/DESCRIPTION | 44 spatialkit-2.0.0/spatialkit/LICENSE | 2 spatialkit-2.0.0/spatialkit/MD5 | 219 spatialkit-2.0.0/spatialkit/NAMESPACE | 60 spatialkit-2.0.0/spatialkit/NEWS.md |only spatialkit-2.0.0/spatialkit/R/area-of-applicability.R |only spatialkit-2.0.0/spatialkit/R/assignment.R | 825 ++ spatialkit-2.0.0/spatialkit/R/cross-validation.R | 2438 +++++++- spatialkit-2.0.0/spatialkit/R/crs-geometry.R | 726 ++ spatialkit-2.0.0/spatialkit/R/evaluation.R | 1208 +++- spatialkit-2.0.0/spatialkit/R/feature-selection.R |only spatialkit-2.0.0/spatialkit/R/level-selection.R | 305 - spatialkit-2.0.0/spatialkit/R/model-bayesian.R | 731 ++ spatialkit-2.0.0/spatialkit/R/model-classes.R | 896 ++- spatialkit-2.0.0/spatialkit/R/model-gwr.R | 596 +- spatialkit-2.0.0/spatialkit/R/model-prep.R | 299 - spatialkit-2.0.0/spatialkit/R/model-rf.R |only spatialkit-2.0.0/spatialkit/R/model-selection-gwr.R |only spatialkit-2.0.0/spatialkit/R/plotting-fits.R |only spatialkit-2.0.0/spatialkit/R/plotting.R | 69 spatialkit-2.0.0/spatialkit/R/predict-surface.R |only spatialkit-2.0.0/spatialkit/R/seeding.R | 211 spatialkit-2.0.0/spatialkit/R/spatialkit-package.R | 70 spatialkit-2.0.0/spatialkit/R/stable-ids-cache.R | 183 spatialkit-2.0.0/spatialkit/R/tessellation.R | 443 + spatialkit-2.0.0/spatialkit/R/utils.R | 315 + spatialkit-2.0.0/spatialkit/R/zzz.R | 90 spatialkit-2.0.0/spatialkit/README.md | 1226 +++- spatialkit-2.0.0/spatialkit/build/partial.rdb |only spatialkit-2.0.0/spatialkit/build/vignette.rds |binary spatialkit-2.0.0/spatialkit/inst/CITATION |only spatialkit-2.0.0/spatialkit/inst/doc/spatialkit_nc_demo.R | 415 - spatialkit-2.0.0/spatialkit/inst/doc/spatialkit_nc_demo.Rmd | 627 +- spatialkit-2.0.0/spatialkit/inst/doc/spatialkit_nc_demo.html | 2844 ++-------- spatialkit-2.0.0/spatialkit/inst/scripts/example_nc_demo.R | 487 + spatialkit-2.0.0/spatialkit/man/area_of_applicability.Rd |only spatialkit-2.0.0/spatialkit/man/assign_features_to_polygons.Rd | 39 spatialkit-2.0.0/spatialkit/man/build_tessellation.Rd | 65 spatialkit-2.0.0/spatialkit/man/clear_fitted_cache.Rd | 25 spatialkit-2.0.0/spatialkit/man/clear_grid_cache.Rd | 9 spatialkit-2.0.0/spatialkit/man/clip_target_for.Rd | 36 spatialkit-2.0.0/spatialkit/man/coef.bayesian_fit.Rd | 13 spatialkit-2.0.0/spatialkit/man/coef.gwr_fit.Rd | 31 spatialkit-2.0.0/spatialkit/man/coef.rf_fit.Rd |only spatialkit-2.0.0/spatialkit/man/coerce_to_points.Rd | 13 spatialkit-2.0.0/spatialkit/man/compare_models.Rd | 58 spatialkit-2.0.0/spatialkit/man/compare_models_cv.Rd | 96 spatialkit-2.0.0/spatialkit/man/create_grid_polygons.Rd | 92 spatialkit-2.0.0/spatialkit/man/create_grid_polygons_cached.Rd | 31 spatialkit-2.0.0/spatialkit/man/create_voronoi_polygons.Rd | 36 spatialkit-2.0.0/spatialkit/man/cv_bayes.Rd | 94 spatialkit-2.0.0/spatialkit/man/cv_gwr.Rd | 90 spatialkit-2.0.0/spatialkit/man/cv_rf.Rd |only spatialkit-2.0.0/spatialkit/man/cv_spatial.Rd | 122 spatialkit-2.0.0/spatialkit/man/determine_optimal_levels.Rd | 84 spatialkit-2.0.0/spatialkit/man/ensure_projected.Rd | 71 spatialkit-2.0.0/spatialkit/man/ensure_stable_poly_id.Rd | 24 spatialkit-2.0.0/spatialkit/man/estimate_sac_range.Rd | 186 spatialkit-2.0.0/spatialkit/man/evaluate_insample.Rd | 52 spatialkit-2.0.0/spatialkit/man/fit_bayesian_spatial_model.Rd | 187 spatialkit-2.0.0/spatialkit/man/fit_gwr_model.Rd | 83 spatialkit-2.0.0/spatialkit/man/fit_rf_model.Rd |only spatialkit-2.0.0/spatialkit/man/fitted.bayesian_fit.Rd |only 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spatialkit-2.0.0/spatialkit/tests/testthat/helper-bootlm.R |only spatialkit-2.0.0/spatialkit/tests/testthat/helper-lmfit.R |only spatialkit-2.0.0/spatialkit/tests/testthat/helper-logging.R |only spatialkit-2.0.0/spatialkit/tests/testthat/helper-moranstub.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-area-of-applicability.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-assignment.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-audit-pass5.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-audit-pass6-low.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-audit-pass6.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-bayes-smoke.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-build-tessellation.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-core-count.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-crs-projection.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-crs-selection.R |only 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spatialkit-2.0.0/spatialkit/tests/testthat/test-lscale-prior.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-make-folds-row-ids.R | 166 spatialkit-2.0.0/spatialkit/tests/testthat/test-model-rf.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-morans-variance.R | 154 spatialkit-2.0.0/spatialkit/tests/testthat/test-morans-weights.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-multipoint-geometry.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-plotting-fits.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-predict-crs-alignment.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-predict-na-alignment.R | 136 spatialkit-2.0.0/spatialkit/tests/testthat/test-predict-surface.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-regression-metrics.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-regressions.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-sac-range.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-sac-residual-alignment.R | 116 spatialkit-2.0.0/spatialkit/tests/testthat/test-seeding.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-spatial-fit-s3.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-stable-ids-cache.R |only spatialkit-2.0.0/spatialkit/tests/testthat/test-summarize-by-cell.R |only spatialkit-2.0.0/spatialkit/vignettes/spatialkit_nc_demo.Rmd | 627 +- 150 files changed, 14659 insertions(+), 4666 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for estimation of multiple random effects with unknown variance-covariance structures (e.g., heterogeneous and unstructured) and known covariance among levels of random effects (e.g., pedigree and genomic relationship matrices) (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>; Jensen et al., 1997). REML estimates can be obtained using the Direct-Inversion Newton-Raphson and Direct-Inversion Average Information algorithms for the problems r x r (r being the number of records) or using the Henderson-based average information algorithm for the problem c x c (c being the number of coefficients to estimate). Spatial models can also be fitted using the two-dimensional spline functionality available.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 4.4.6 dated 2026-07-09 and 4.4.7 dated 2026-09-11
DESCRIPTION | 8 +-- MD5 | 22 ++++----- NAMESPACE | 2 R/mmes.R | 63 ++++++++++++++++++++++---- inst/doc/sommer.gxe.html | 6 +- inst/doc/sommer.qg.R | 32 +++++++++++++ inst/doc/sommer.qg.Rmd | 42 +++++++++++++++++ inst/doc/sommer.qg.html | 60 ++++++++++++++++++++++--- inst/doc/sommer.spatial.html | 42 ++++++++--------- inst/doc/sommer.vs.lme4.html | 2 src/MNR.cpp | 101 +++++++++++-------------------------------- vignettes/sommer.qg.Rmd | 42 +++++++++++++++++ 12 files changed, 290 insertions(+), 132 deletions(-)
Title: Simple Features for R
Description: Support for simple feature access, a standardized way to
encode and analyze spatial vector data. Binds to 'GDAL'
<doi:10.5281/zenodo.5884351> for reading and writing data, to 'GEOS'
<doi:10.5281/zenodo.11396894> for geometrical operations,
and to 'PROJ' <doi:10.5281/zenodo.5884394> for projection
conversions and datum transformations. Uses by default the 's2'
package for geometry operations on geodetic (long/lat degree)
coordinates.
Author: Edzer Pebesma [aut, cre] ,
Roger Bivand [ctb] ,
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] ,
Kirill Mueller [ctb],
Thomas Lin Pedersen [ctb],
Dan Baston [c [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 1.1-2 dated 2026-07-23 and 1.1-3 dated 2026-09-11
DESCRIPTION | 13 MD5 | 130 +- NAMESPACE | 111 + NEWS.md | 10 R/aggregate.R | 40 R/cast_sfg.R | 4 R/crs.R | 7 R/geom-transformers.R | 35 R/read.R | 1 R/sfc.R | 36 R/sp.R | 7 R/stars.R | 2 R/transform.R | 22 R/valid.R | 2 R/wkb.R | 4 inst/doc/sf1.R | 2 inst/doc/sf1.Rmd | 12 inst/doc/sf1.html | 2600 ++++++++++++++++++++++++++++++++------------ inst/doc/sf2.R | 2 inst/doc/sf2.Rmd | 12 inst/doc/sf2.html | 2000 +++++++++++++++++++++++++++------ inst/doc/sf3.R | 2 inst/doc/sf3.Rmd | 12 inst/doc/sf3.html | 2416 ++++++++++++++++++++++++++++++---------- inst/doc/sf4.R | 2 inst/doc/sf4.Rmd | 12 inst/doc/sf4.html | 2066 +++++++++++++++++++++++++++------- inst/doc/sf5.R | 2 inst/doc/sf5.Rmd | 14 inst/doc/sf5.html | 1883 ++++++++++++++++++++++++++----- inst/doc/sf6.R | 2 inst/doc/sf6.Rmd | 12 inst/doc/sf6.html | 1782 +++++++++++++++++++++++++----- inst/doc/sf7.R | 2 inst/doc/sf7.Rmd | 12 inst/doc/sf7.html | 2056 +++++++++++++++++++++++++++------- inst/docker/gdal/Dockerfile | 35 man/coerce-methods.Rd | 19 man/gdal.Rd | 2 man/geos_unary.Rd | 14 man/interpolate_aw.Rd | 25 man/st_coordinates.Rd | 23 man/st_crs.Rd | 2 man/st_precision.Rd | 6 man/st_transform.Rd | 2 src/gdal.cpp | 25 src/proj.cpp | 3 tests/aggregate.R | 6 tests/aggregate.Rout.save | 16 tests/gdal_geom.R | 2 tests/gdal_geom.Rout.save | 8 tests/plot.R | 4 tests/plot.Rout.save | 10 tests/s2.R | 2 tests/s2.Rout.save | 10 tests/sfc.R | 13 tests/sfc.Rout.save | 19 tests/testthat/test-geos.R | 10 tests/testthat/test-sfc.R | 6 vignettes/sf1.Rmd | 12 vignettes/sf2.Rmd | 12 vignettes/sf3.Rmd | 12 vignettes/sf4.Rmd | 12 vignettes/sf5.Rmd | 14 vignettes/sf6.Rmd | 12 vignettes/sf7.Rmd | 12 66 files changed, 12179 insertions(+), 3496 deletions(-)
Title: 'CppAD' C++ Header Files for Automatic Differentiation
Description: Provides the 'CppAD' C++ header library for automatic
differentiation, for use by R packages via LinkingTo. Headers are
vendored with CRAN-safe defaults and R-safe error handling that does not call std::cerr or
std::exit. The two final components of the version number are the 'CppAD' release number.
Author: Patrick Brown [aut, cre, cph],
Bradley M. Bell [aut, cph] ,
COIN-OR Foundation [cph]
Maintainer: Patrick Brown <patrick.borgnine@gmail.com>
Diff between RCppAD versions 1.20260000.0 dated 2026-08-07 and 1.20260000.0-1 dated 2026-09-11
DESCRIPTION | 7 ++++--- MD5 | 6 +++--- inst/include/cppad/README.RCppAD.md | 5 ++++- inst/include/cppad/utility/sparse_rc.hpp | 1 + 4 files changed, 12 insertions(+), 7 deletions(-)
Title: Spatial Designs for Ecological and Environmental Surveys
Description: Provides spatially survey balanced designs. Information about the package itself is given in Foster (2021) <doi:10.1111/2041-210X.13535>. Designs using MBHdesign can: 1) accommodate, without substantial detrimental effects on spatial balance, legacy sites (Foster et al., 2017 <doi:10.1111/2041-210X.12782>); 2) be based on points or transects (foster et al. 2020 <doi:10.1111/2041-210X.13321> and produce clustered samples (Foster et al. (in press). The base idea that these designs stem from is the quasi-random number method described Robinson et al. (2013) <doi:10.1111/biom.12059> and adjusted in Robinson et al. (2017) <doi:10.1016/j.spl.2017.05.004>.
Author: Scott D. Foster [aut],
Scott Foster [cre]
Maintainer: Scott Foster <scott.foster@csiro.au>
This is a re-admission after prior archival of version 2.3.15 dated 2023-09-25
Diff between MBHdesign versions 2.3.15 dated 2023-09-25 and 2.3.22 dated 2026-09-11
MBHdesign-2.3.15/MBHdesign/inst/CITATION |only MBHdesign-2.3.22/MBHdesign/DESCRIPTION | 20 + MBHdesign-2.3.22/MBHdesign/MD5 | 31 +- MBHdesign-2.3.22/MBHdesign/NAMESPACE | 2 MBHdesign-2.3.22/MBHdesign/R/MBHdesign4.R | 28 +- MBHdesign-2.3.22/MBHdesign/R/alterInclProbs.cluster.R | 175 +++++++++------ MBHdesign-2.3.22/MBHdesign/R/quasiSamp.cluster.R | 12 - MBHdesign-2.3.22/MBHdesign/build/vignette.rds |binary MBHdesign-2.3.22/MBHdesign/inst/doc/MBHdesign.R | 6 MBHdesign-2.3.22/MBHdesign/inst/doc/MBHdesign.pdf |binary MBHdesign-2.3.22/MBHdesign/inst/doc/MBHdesign.rnw | 8 MBHdesign-2.3.22/MBHdesign/man/alterInclProbs.cluster.Rd | 4 MBHdesign-2.3.22/MBHdesign/man/findDescendingTrans.Rd | 2 MBHdesign-2.3.22/MBHdesign/man/quasiSamp.Rd | 21 + MBHdesign-2.3.22/MBHdesign/man/transectSamp.Rd | 8 MBHdesign-2.3.22/MBHdesign/vignettes/MBHdesign.bib | 37 +-- MBHdesign-2.3.22/MBHdesign/vignettes/MBHdesign.rnw | 6 17 files changed, 217 insertions(+), 143 deletions(-)
Title: Breeding-Related Mixed-Effects Models
Description: Fit relationship-based and customized mixed-effects models with complex variance-covariance structures using the 'lme4' machinery. The core computational algorithms are implemented using the
'Eigen' 'C++' library for numerical linear algebra and 'RcppEigen' 'glue'.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between lme4breeding versions 1.1.3 dated 2026-07-12 and 1.1.4 dated 2026-09-11
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- README.md | 2 +- inst/doc/lmebreed.gxe.html | 8 ++++---- inst/doc/lmebreed.qg.html | 4 ++-- inst/doc/lmebreed.summaries.html | 4 ++-- 6 files changed, 18 insertions(+), 18 deletions(-)
Title: Quantifying and Monetizing Health Impacts Attributable to
Exposure
Description: This R package has been developed with a focus on air pollution and noise but can be applied to other exposures. The initial development has been funded by the European Union project BEST-COST. Disclaimer: It is work in progress and the developers are not liable for any calculation errors or inaccuracies resulting from the use of this package.
Selection of relevant references (in chronological order):
WHO (2003) <https://www.who.int/publications/i/item/9241546204>,
Murray et al. (2003) <doi:10.1186/1478-7954-1-1>,
Miller & Hurley (2003) <doi:10.1136/jech.57.3.200>,
Steenland & Armstrong (2006) <doi:10.1097/01.ede.0000229155.05644.43>,
WHO (2011) <https://iris.who.int/items/723ab97c-5c33-4e3b-8df1-744aa5bc1c27>,
GBD 2019 Risk Factors Collaborators (2020) <doi:10.1016/S0140-6736(20)30752-2>.
Author: Alberto Castro [cre, aut] ,
Axel Luyten [aut] ,
Arno Pauwels [ctb] ,
Liliana Vazquez Fernandez [ctb] ,
Gianni Ardielli [ctb] ,
Iracy Pimenta [ctb] ,
Susanne Breitner [ctb] ,
Carl Baravelli [ctb] ,
Vanessa Gorasso [ctb] ,
Maria Lepnurm [ctb] ,
Andreia [...truncated...]
Maintainer: Alberto Castro <alberto.castrofernandez@swisstph.ch>
Diff between healthiar versions 0.2.5 dated 2026-08-21 and 0.2.6 dated 2026-09-11
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healthiar-0.2.6/healthiar/R/get_inflation_factor.R | 73 healthiar-0.2.6/healthiar/R/get_input_args.R | 16 healthiar-0.2.6/healthiar/R/get_output.R | 199 healthiar-0.2.6/healthiar/R/get_paf.R | 12 healthiar-0.2.6/healthiar/R/get_pop_fraction.R | 35 healthiar-0.2.6/healthiar/R/get_risk.R | 124 healthiar-0.2.6/healthiar/R/get_risk_and_pop_fraction.R | 101 healthiar-0.2.6/healthiar/R/monetize.R | 226 healthiar-0.2.6/healthiar/R/multiexpose.R | 69 healthiar-0.2.6/healthiar/R/prepare_exposure.R | 195 healthiar-0.2.6/healthiar/R/prepare_lifetable.R | 257 - healthiar-0.2.6/healthiar/R/prepare_mdi.R | 171 healthiar-0.2.6/healthiar/R/socialize.R | 392 - healthiar-0.2.6/healthiar/R/standardize.R | 153 healthiar-0.2.6/healthiar/R/summarize_uncertainty.R | 450 + healthiar-0.2.6/healthiar/R/validate_args.R |only healthiar-0.2.6/healthiar/R/validate_input_attribute.R | 886 +-- healthiar-0.2.6/healthiar/R/zzz_global_variables.R | 4 healthiar-0.2.6/healthiar/README.md | 34 healthiar-0.2.6/healthiar/build/partial.rdb |binary healthiar-0.2.6/healthiar/data/exdat_cantons.rda |binary healthiar-0.2.6/healthiar/data/exdat_lifetable.rda |binary healthiar-0.2.6/healthiar/data/exdat_noise.rda |binary healthiar-0.2.6/healthiar/data/exdat_ozone.rda |binary healthiar-0.2.6/healthiar/data/exdat_pm.rda |binary healthiar-0.2.6/healthiar/data/exdat_prepare_mdi.rda |binary healthiar-0.2.6/healthiar/data/exdat_pwm_2.rda |binary healthiar-0.2.6/healthiar/data/exdat_socialize.rda |binary healthiar-0.2.6/healthiar/inst/REFERENCES.bib | 46 healthiar-0.2.6/healthiar/inst/doc/intro_to_healthiar.R | 111 healthiar-0.2.6/healthiar/inst/doc/intro_to_healthiar.Rmd | 568 +- healthiar-0.2.6/healthiar/inst/doc/intro_to_healthiar.html | 1517 ++++-- healthiar-0.2.6/healthiar/man/attribute_health.Rd | 23 healthiar-0.2.6/healthiar/man/attribute_lifetable.Rd | 61 healthiar-0.2.6/healthiar/man/attribute_master.Rd | 14 healthiar-0.2.6/healthiar/man/attribute_mod.Rd | 11 healthiar-0.2.6/healthiar/man/cba.Rd | 8 healthiar-0.2.6/healthiar/man/check_if_args_identical.Rd | 6 healthiar-0.2.6/healthiar/man/collapse_df_by_group.Rd | 16 healthiar-0.2.6/healthiar/man/discount.Rd | 2 healthiar-0.2.6/healthiar/man/exdat_pwm_1.Rd | 10 healthiar-0.2.6/healthiar/man/get_discount_factor.Rd | 19 healthiar-0.2.6/healthiar/man/get_inflation_factor.Rd | 21 healthiar-0.2.6/healthiar/man/get_paf.Rd | 2 healthiar-0.2.6/healthiar/man/get_risk.Rd | 19 healthiar-0.2.6/healthiar/man/monetize.Rd | 8 healthiar-0.2.6/healthiar/man/multiexpose.Rd | 2 healthiar-0.2.6/healthiar/man/prepare_exposure.Rd | 32 healthiar-0.2.6/healthiar/man/prepare_lifetable.Rd | 30 healthiar-0.2.6/healthiar/man/socialize.Rd | 2 healthiar-0.2.6/healthiar/man/standardize.Rd | 50 healthiar-0.2.6/healthiar/man/summarize_uncertainty.Rd | 24 healthiar-0.2.6/healthiar/man/validate_args.Rd |only healthiar-0.2.6/healthiar/tests/testthat/helper.R | 22 healthiar-0.2.6/healthiar/tests/testthat/test-attribute_health.R | 1928 ++++--- healthiar-0.2.6/healthiar/tests/testthat/test-attribute_lifetable.R | 2017 ++++---- healthiar-0.2.6/healthiar/tests/testthat/test-cba.R | 1535 +++--- healthiar-0.2.6/healthiar/tests/testthat/test-compare.R | 256 - 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Title: Publication-Quality 'ggplot2' Annotation
Description: Annotation helper functions for publication-quality 'ggplot2'
visualisation. These functions make it easier to annotate plots in
a way that stays consistent with the set theme.
Author: David Hodge [aut, cre, cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggscribe versions 0.2.0 dated 2026-07-06 and 1.0.0 dated 2026-09-11
ggscribe-0.2.0/ggscribe/R/aes-contrast.R |only ggscribe-0.2.0/ggscribe/man/aes_contrast.Rd |only ggscribe-0.2.0/ggscribe/man/axis_bracket.Rd |only ggscribe-0.2.0/ggscribe/man/axis_line.Rd |only ggscribe-0.2.0/ggscribe/man/axis_text.Rd |only ggscribe-0.2.0/ggscribe/man/axis_ticks.Rd |only ggscribe-0.2.0/ggscribe/man/panel_background.Rd |only ggscribe-0.2.0/ggscribe/man/panel_grid.Rd |only ggscribe-0.2.0/ggscribe/man/panel_shade.Rd |only ggscribe-0.2.0/ggscribe/man/reference_line.Rd |only ggscribe-1.0.0/ggscribe/DESCRIPTION | 10 ggscribe-1.0.0/ggscribe/MD5 | 32 +- ggscribe-1.0.0/ggscribe/NAMESPACE | 23 +- ggscribe-1.0.0/ggscribe/NEWS.md | 5 ggscribe-1.0.0/ggscribe/R/axis-panel-reference.R | 84 ++++--- ggscribe-1.0.0/ggscribe/R/sec-axis-text.R | 2 ggscribe-1.0.0/ggscribe/README.md | 114 ---------- ggscribe-1.0.0/ggscribe/man/annotate_axis_bracket.Rd |only ggscribe-1.0.0/ggscribe/man/annotate_axis_line.Rd |only ggscribe-1.0.0/ggscribe/man/annotate_axis_text.Rd |only ggscribe-1.0.0/ggscribe/man/annotate_axis_ticks.Rd |only ggscribe-1.0.0/ggscribe/man/annotate_panel_background.Rd |only ggscribe-1.0.0/ggscribe/man/annotate_panel_grid.Rd |only ggscribe-1.0.0/ggscribe/man/annotate_panel_shade.Rd |only ggscribe-1.0.0/ggscribe/man/annotate_reference_line.Rd |only ggscribe-1.0.0/ggscribe/man/figures/README-unnamed-chunk-2-1.png |binary 26 files changed, 85 insertions(+), 185 deletions(-)
Title: Visually Exploring Random Forests
Description: Graphic elements for exploring Random Forests using the
'randomForest' or 'randomForestSRC' package for survival, regression
and classification forests and 'ggplot2' package plotting. Implements
visualizations of the methods described in Breiman (2001)
<doi:10.1023/A:1010933404324> and Ishwaran, Kogalur, Blackstone, and
Lauer (2008) <doi:10.1214/08-AOAS169>.
Author: John Ehrlinger [aut, cre]
Maintainer: John Ehrlinger <john.ehrlinger@gmail.com>
Diff between ggRandomForests versions 3.5.2 dated 2026-08-21 and 3.5.3 dated 2026-09-11
DESCRIPTION | 8 - MD5 | 30 +++--- NEWS.md | 11 ++ inst/doc/ggRandomForests-classification.html | 26 ++--- inst/doc/ggRandomForests-regression.html | 42 ++++---- inst/doc/ggRandomForests-survival.html | 50 +++++----- inst/doc/ggRandomForests.html | 10 +- inst/doc/uvarpro.html | 10 +- inst/doc/varpro.html | 30 +++--- tests/testthat/_snaps/snapshots/gg-brier-survival-crps.svg | 42 ++++---- tests/testthat/_snaps/snapshots/gg-brier-survival-envelope.svg | 34 +++--- tests/testthat/_snaps/snapshots/gg-brier-survival-overall.svg | 34 +++--- tests/testthat/_snaps/snapshots/gg-error-survival-rfsrc.svg | 26 ++--- tests/testthat/_snaps/snapshots/gg-vimp-survival-rfsrc.svg | 22 ++-- tests/testthat/test_cran_comments.R | 23 ++++ tests/testthat/test_gg_sdependent.R | 12 +- 16 files changed, 222 insertions(+), 188 deletions(-)
More information about ggRandomForests at CRAN
Permanent link
Title: Generalized Coupled Tensor Factorization
Description: Multiple matrices/tensors can be specified and decomposed simultaneously by Probabilistic Latent Tensor Factorisation (PLTF). See the reference section of GitHub README.md <https://github.com/rikenbit/gcTensor>, for details of the method.
Author: Koki Tsuyuzaki [aut, cre]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between gcTensor versions 1.0.0 dated 2023-07-06 and 1.0.1 dated 2026-09-11
DESCRIPTION | 7 ++++--- MD5 | 11 ++++++----- R/GCTF.R | 17 ++++++++++++----- build/partial.rdb |binary inst/NEWS | 6 ++++++ man/GCTF.Rd | 6 +++--- tests/testthat/test_ttm_dimnames.R |only 7 files changed, 31 insertions(+), 16 deletions(-)
Title: Evolutionary Algorithm
Description: Runs an evolutionary algorithm using the 'AlphaSimR' machinery <doi:10.1093/g3journal/jkaa017> .
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between evola versions 1.0.8 dated 2026-07-20 and 1.0.9 dated 2026-09-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/evolafit.R | 2 ++ inst/doc/evola_intro.html | 4 ++-- 4 files changed, 11 insertions(+), 9 deletions(-)
Title: Linear Predictive Models Based on the LIBLINEAR C/C++ Library
Description: A wrapper around the LIBLINEAR C/C++ library for machine
learning (available at
<https://www.csie.ntu.edu.tw/~cjlin/liblinear/>). LIBLINEAR is
a simple library for solving large-scale regularized linear
classification and regression. It currently supports
L2-regularized classification (such as logistic regression,
L2-loss linear SVM and L1-loss linear SVM) as well as
L1-regularized classification (such as L2-loss linear SVM and
logistic regression) and L2-regularized support vector
regression (with L1- or L2-loss). The main features of
LiblineaR include multi-class classification (one-vs-the rest,
and Crammer & Singer method), cross validation for model
selection, probability estimates (logistic regression only) or
weights for unbalanced data. The estimation of the models is
particularly fast as compared to other libraries.
Author: Thibault Helleputte [cre, aut, cph],
Jerome Paul [aut],
Pierre Gramme [aut],
Chih-Jen Lin [cph] ; see LICENSE.note)
Maintainer: Thibault Helleputte <thibault.helleputte@dnalytics.com>
Diff between LiblineaR versions 2.10-24 dated 2024-09-13 and 2.10-25 dated 2026-09-11
LiblineaR-2.10-24/LiblineaR/tests/RSquared.R |only LiblineaR-2.10-24/LiblineaR/tests/testLiblineaR.R |only LiblineaR-2.10-25/LiblineaR/DESCRIPTION | 24 ++++++++---- LiblineaR-2.10-25/LiblineaR/LICENSE.note |only LiblineaR-2.10-25/LiblineaR/MD5 | 44 ++++++++++++++++------ LiblineaR-2.10-25/LiblineaR/NEWS | 19 +++++++++ LiblineaR-2.10-25/LiblineaR/R/LiblineaR.R | 26 ++++++++++--- LiblineaR-2.10-25/LiblineaR/R/predict.R | 16 ++++++-- LiblineaR-2.10-25/LiblineaR/README | 17 ++++++++ LiblineaR-2.10-25/LiblineaR/build |only LiblineaR-2.10-25/LiblineaR/inst/CITATION | 35 ++++++++--------- LiblineaR-2.10-25/LiblineaR/inst/WORDLIST |only LiblineaR-2.10-25/LiblineaR/inst/doc |only LiblineaR-2.10-25/LiblineaR/man/LiblineaR.Rd | 4 +- LiblineaR-2.10-25/LiblineaR/src/Makevars |only LiblineaR-2.10-25/LiblineaR/src/linear.cpp | 3 + LiblineaR-2.10-25/LiblineaR/src/predictLinear.c | 8 +++- LiblineaR-2.10-25/LiblineaR/src/trainLinear.c | 29 ++++++++++---- LiblineaR-2.10-25/LiblineaR/tests/testthat |only LiblineaR-2.10-25/LiblineaR/tests/testthat.R |only LiblineaR-2.10-25/LiblineaR/vignettes |only 21 files changed, 166 insertions(+), 59 deletions(-)
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing, manipulating
and analyzing transaction data and patterns (frequent itemsets and
association rules). Also provides C implementations of the
association mining algorithms Apriori and Eclat. Hahsler, Gruen and
Hornik (2005) <doi:10.18637/jss.v014.i15>.
Author: Michael Hahsler [aut, cre, cph] ,
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph] ,
Christian Borgelt [ctb, cph],
Ian Johnson [ctb],
Makhlouf Ledmi [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.7.14 dated 2026-03-29 and 1.7.15 dated 2026-09-11
arules-1.7.14/arules/tests/testthat/test-missing.R |only arules-1.7.15/arules/DESCRIPTION | 15 arules-1.7.15/arules/MD5 | 247 ++-- arules-1.7.15/arules/NEWS.md | 39 arules-1.7.15/arules/R/AAA_arules-package.R | 40 arules-1.7.15/arules/R/AAA_check_installed.R | 7 arules-1.7.15/arules/R/appearance.R | 5 arules-1.7.15/arules/R/associations.R | 2 arules-1.7.15/arules/R/c.R | 2 arules-1.7.15/arules/R/confint.R | 117 +- arules-1.7.15/arules/R/control.R | 13 arules-1.7.15/arules/R/dissimilarity.R | 52 arules-1.7.15/arules/R/hierarchy.R | 34 arules-1.7.15/arules/R/interestMeasures.R | 63 - arules-1.7.15/arules/R/itemMatrix.R | 13 arules-1.7.15/arules/R/itemsets.R | 3 arules-1.7.15/arules/R/match.R | 14 arules-1.7.15/arules/R/merge.R | 19 arules-1.7.15/arules/R/parameter.R | 9 arules-1.7.15/arules/R/pmml.R | 8 arules-1.7.15/arules/R/predict.R | 41 arules-1.7.15/arules/R/ruleInduction.R | 45 arules-1.7.15/arules/R/rules.R | 3 arules-1.7.15/arules/R/sets.R | 7 arules-1.7.15/arules/R/support.R | 53 arules-1.7.15/arules/R/tidLists.R | 17 arules-1.7.15/arules/R/transactions.R | 15 arules-1.7.15/arules/R/warm.R | 2 arules-1.7.15/arules/README.md | 70 - arules-1.7.15/arules/build/partial.rdb |binary arules-1.7.15/arules/build/vignette.rds |binary arules-1.7.15/arules/inst/doc/arules.R | 4 arules-1.7.15/arules/inst/doc/arules.Rnw | 2 arules-1.7.15/arules/inst/doc/arules.pdf |binary arules-1.7.15/arules/inst/doc/getting-started.R |only arules-1.7.15/arules/inst/doc/getting-started.Rmd |only arules-1.7.15/arules/inst/doc/getting-started.html |only arules-1.7.15/arules/inst/doc/interest-measures.R |only arules-1.7.15/arules/inst/doc/interest-measures.Rmd |only arules-1.7.15/arules/inst/doc/interest-measures.html |only arules-1.7.15/arules/inst/doc/item-hierarchies.R |only arules-1.7.15/arules/inst/doc/item-hierarchies.Rmd |only arules-1.7.15/arules/inst/doc/item-hierarchies.html |only arules-1.7.15/arules/inst/doc/mining-and-pruning-rules.R |only arules-1.7.15/arules/inst/doc/mining-and-pruning-rules.Rmd |only arules-1.7.15/arules/inst/doc/mining-and-pruning-rules.html |only arules-1.7.15/arules/inst/doc/preparing-transaction-data.R |only arules-1.7.15/arules/inst/doc/preparing-transaction-data.Rmd |only arules-1.7.15/arules/inst/doc/preparing-transaction-data.html |only arules-1.7.15/arules/man/APappearance-class.Rd | 12 arules-1.7.15/arules/man/AScontrol-classes.Rd | 23 arules-1.7.15/arules/man/ASparameter-classes.Rd | 12 arules-1.7.15/arules/man/DATAFRAME.Rd | 6 arules-1.7.15/arules/man/LIST.Rd | 6 arules-1.7.15/arules/man/SunBai.Rd | 6 arules-1.7.15/arules/man/abbreviate.Rd | 62 - arules-1.7.15/arules/man/affinity.Rd | 8 arules-1.7.15/arules/man/apriori.Rd | 10 arules-1.7.15/arules/man/arules-package.Rd | 49 arules-1.7.15/arules/man/associations-class.Rd | 32 arules-1.7.15/arules/man/c.Rd | 66 - arules-1.7.15/arules/man/confint.Rd | 117 +- arules-1.7.15/arules/man/coverage.Rd | 12 arules-1.7.15/arules/man/crossTable.Rd | 32 arules-1.7.15/arules/man/discretize.Rd | 6 arules-1.7.15/arules/man/dissimilarity.Rd | 59 - arules-1.7.15/arules/man/duplicated.Rd | 62 - arules-1.7.15/arules/man/eclat.Rd | 10 arules-1.7.15/arules/man/extract.Rd | 66 - arules-1.7.15/arules/man/fim4r.Rd | 10 arules-1.7.15/arules/man/hierarchy.Rd | 64 - arules-1.7.15/arules/man/hits.Rd | 4 arules-1.7.15/arules/man/image.Rd | 32 arules-1.7.15/arules/man/inspect.Rd | 62 - arules-1.7.15/arules/man/interestMeasure.Rd | 25 arules-1.7.15/arules/man/is.closed.Rd | 43 arules-1.7.15/arules/man/is.generator.Rd | 43 arules-1.7.15/arules/man/is.maximal.Rd | 43 arules-1.7.15/arules/man/is.redundant.Rd | 55 arules-1.7.15/arules/man/is.significant.Rd | 55 arules-1.7.15/arules/man/is.superset.Rd | 81 - 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