Title: Read and Write 'Parquet' Files
Description: Self-sufficient reader and writer for flat 'Parquet' files.
Can read most 'Parquet' data types. Can write many 'R' data types,
including factors and temporal types. See docs for limitations.
Author: Gabor Csardi [aut, cre],
Hannes Muehleisen [aut, cph] ,
Google Inc. [cph],
Apache Software Foundation [cph],
Posit Software, PBC [cph],
RAD Game Tools [cph],
Valve Software [cph],
Tenacious Software LLC [cph],
Facebook, Inc. [cph]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between nanoparquet versions 0.5.1 dated 2026-04-20 and 0.5.2 dated 2026-09-15
DESCRIPTION | 8 - MD5 | 53 +++++----- NAMESPACE | 1 NEWS.md | 24 ++++ R/options.R | 6 - R/parquet-metadata.R | 113 ++++++++++++++++++++++ R/read-parquet.R | 7 - README.md | 4 inst/WORDLIST | 2 man/edit_parquet_metadata.Rd |only man/nanoparquet-package.Rd | 3 man/parquet_options.Rd | 6 - src/Makevars.in | 2 src/RParquetOutFile.cpp | 81 ++++++++++++--- src/RParquetReader.cpp | 67 +++++++------ src/RParquetReader.h | 11 ++ src/edit-metadata.cpp |only src/lib/ParquetOutFile.cpp | 3 src/read2.cpp | 18 ++- src/rwrapper.cpp | 6 + src/thrift/numeric_cast.h | 1 src/write_stdout.c | 7 + tests/testthat/_snaps/write-parquet-statistics.md | 36 +++++++ tests/testthat/_snaps/write-parquet.md | 4 tests/testthat/test-edit-parquet-metadata.R |only tests/testthat/test-read-parquet-5.R | 65 ++++++++++++ tests/testthat/test-write-parquet-2.R | 18 +++ tests/testthat/test-write-parquet-statistics.R | 56 ++++++++++ tests/testthat/test-write-parquet.R | 6 - 29 files changed, 512 insertions(+), 96 deletions(-)
Title: Various Methods for the Two Sample Problem in D>1 Dimensions
Description: The routine twosample_test() in this package runs the
two-sample test using various test statistic for multivariate data.
The user can also run several tests and then find a p value adjusted for simultaneous inference.
The p values are found via permutation or via the parametric bootstrap.
The routine twosample_power() allows the estimation of the power of the tests.
The routine run.studies() allows a user to quickly study the power of a new method and
how it compares to those included in the package.
For details of the methods and references see the included vignettes.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between MD2sample versions 1.3.0 dated 2026-08-04 and 1.4.0 dated 2026-09-15
DESCRIPTION | 6 MD5 | 60 NAMESPACE | 14 NEWS.md | 7 R/bincounterR.R | 105 - R/case.studies.R | 1256 ++++++++++---------- R/change.marginals.R | 63 - R/helper_functions.R |only R/power_pvals.R | 229 +-- R/rDalitz.R | 181 +- R/run.studies.R | 30 R/signif_digits.R | 62 R/test_methods.R | 78 - R/timecheck.R | 40 R/twosample_power.R | 217 ++- R/twosample_test.R | 432 ++---- R/twosample_test_adjusted_pvalue.R | 578 ++------- inst/doc/CaseStudies.html | 68 - inst/doc/MD2sample.html | 214 +-- man/MD2sample_power-methods.Rd |only man/MD2sample_test-methods.Rd |only man/run.studies.Rd | 2 man/signif_digits.Rd | 1 man/test_methods.Rd | 12 man/timecheck.Rd | 1 man/twosample_power.Rd | 17 man/twosample_test.Rd | 9 man/twosample_test_adjusted_pvalue.Rd | 57 tests/testthat/helper-workflows.R | 16 tests/testthat/test-continuous-workflows.R | 3 tests/testthat/test-discrete-custom-TS-signatures.R |only tests/testthat/test-discrete-matrix-detection.R |only tests/testthat/test-discrete-workflows.R | 3 tests/testthat/test-output-and-validation.R |only 34 files changed, 1733 insertions(+), 2028 deletions(-)
Title: B Cell Receptor Phylogenetics Toolkit
Description: Provides a set of functions for inferring, visualizing, and analyzing B cell phylogenetic trees.
Provides methods to 1) reconstruct unmutated ancestral sequences,
2) build B cell phylogenetic trees using multiple methods,
3) visualize trees with metadata at the tips,
4) reconstruct intermediate sequences,
5) detect biased ancestor-descendant relationships among metadata types
Workflow examples available at documentation site (see URL).
Citations:
Hoehn et al (2022) <doi:10.1371/journal.pcbi.1009885>,
Hoehn et al (2021) <doi:10.1101/2021.01.06.425648>.
Author: Kenneth Hoehn [aut, cre],
Cole Jensen [aut],
Jessie Fielding [aut],
Hunter Melton [aut],
Susanna Marquez [ctb],
Jason Vander Heiden [ctb],
Erick Matsen [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Kenneth Hoehn <kenneth.b.hoehn@dartmouth.edu>
Diff between dowser versions 2.5.1 dated 2026-08-20 and 2.5.2 dated 2026-09-15
dowser-2.5.1/dowser/inst/doc/Building-Time-Trees-Vignette.R |only dowser-2.5.1/dowser/inst/doc/Building-Trees-Vignette.R |only dowser-2.5.1/dowser/inst/doc/Input-Output-Vignette.R |only dowser-2.5.1/dowser/inst/doc/Plotting-Trees-Vignette.R |only dowser-2.5.1/dowser/inst/doc/Quickstart-Vignette.R |only dowser-2.5.2/dowser/DESCRIPTION | 8 dowser-2.5.2/dowser/MD5 | 96 +- dowser-2.5.2/dowser/NAMESPACE | 2 dowser-2.5.2/dowser/NEWS.md | 8 dowser-2.5.2/dowser/R/Clones.R | 8 dowser-2.5.2/dowser/R/Germlines.R | 4 dowser-2.5.2/dowser/R/IO.R | 10 dowser-2.5.2/dowser/R/Plotting.R | 2 dowser-2.5.2/dowser/R/TimeTreesFunctions.R | 93 +- dowser-2.5.2/dowser/R/TreeFunctions.R | 6 dowser-2.5.2/dowser/build/vignette.rds |binary dowser-2.5.2/dowser/inst/doc/Building-Time-Trees-Vignette.Rmd | 433 ---------- dowser-2.5.2/dowser/inst/doc/Building-Time-Trees-Vignette.pdf |binary dowser-2.5.2/dowser/inst/doc/Building-Trees-Vignette.Rmd | 183 ---- dowser-2.5.2/dowser/inst/doc/Building-Trees-Vignette.pdf |binary dowser-2.5.2/dowser/inst/doc/Discrete-Trait-Vignette.Rmd |only dowser-2.5.2/dowser/inst/doc/Discrete-Trait-Vignette.pdf |only dowser-2.5.2/dowser/inst/doc/Germlines-Vignette.Rmd |only dowser-2.5.2/dowser/inst/doc/Germlines-Vignette.pdf |only dowser-2.5.2/dowser/inst/doc/Input-Output-Vignette.Rmd | 178 ---- dowser-2.5.2/dowser/inst/doc/Input-Output-Vignette.pdf |binary dowser-2.5.2/dowser/inst/doc/Measurable-Evolution.Rmd |only dowser-2.5.2/dowser/inst/doc/Measurable-Evolution.pdf |only dowser-2.5.2/dowser/inst/doc/NonB-Cell-Data.Rmd |only dowser-2.5.2/dowser/inst/doc/NonB-Cell-Data.html |only dowser-2.5.2/dowser/inst/doc/Plotting-Trees-Vignette.Rmd | 166 --- dowser-2.5.2/dowser/inst/doc/Plotting-Trees-Vignette.pdf |binary dowser-2.5.2/dowser/inst/doc/Quickstart-Vignette.Rmd | 29 dowser-2.5.2/dowser/inst/doc/Quickstart-Vignette.pdf |binary dowser-2.5.2/dowser/inst/doc/Removing-Problematic-Sequences-Vignette.Rmd |only dowser-2.5.2/dowser/inst/doc/Removing-Problematic-Sequences-Vignette.pdf |only dowser-2.5.2/dowser/inst/doc/Resolve-Light-Chains-Vignette.Rmd |only dowser-2.5.2/dowser/inst/doc/Resolve-Light-Chains-Vignette.pdf |only dowser-2.5.2/dowser/inst/doc/Sequences-Vignette.Rmd |only dowser-2.5.2/dowser/inst/doc/Sequences-Vignette.pdf |only dowser-2.5.2/dowser/inst/get_UCA.py | 12 dowser-2.5.2/dowser/man/createGermlines.Rd | 2 dowser-2.5.2/dowser/man/dowserObjectEquivalent.Rd | 2 dowser-2.5.2/dowser/man/getDiffPoints.Rd | 25 dowser-2.5.2/dowser/man/getSubTaxa.Rd | 3 dowser-2.5.2/dowser/man/getTrees.Rd | 3 dowser-2.5.2/dowser/man/makeAirrClone.Rd | 2 dowser-2.5.2/dowser/man/plotTrees.Rd | 2 dowser-2.5.2/dowser/man/readIMGT.Rd | 2 dowser-2.5.2/dowser/man/treesEquivalent.Rd | 4 dowser-2.5.2/dowser/vignettes/Building-Time-Trees-Vignette.Rmd | 433 ---------- dowser-2.5.2/dowser/vignettes/Building-Trees-Vignette.Rmd | 183 ---- dowser-2.5.2/dowser/vignettes/Discrete-Trait-Vignette.Rmd |only dowser-2.5.2/dowser/vignettes/Germlines-Vignette.Rmd |only dowser-2.5.2/dowser/vignettes/Input-Output-Vignette.Rmd | 178 ---- dowser-2.5.2/dowser/vignettes/Measurable-Evolution.Rmd |only dowser-2.5.2/dowser/vignettes/NonB-Cell-Data.Rmd |only dowser-2.5.2/dowser/vignettes/Plotting-Trees-Vignette.Rmd | 166 --- dowser-2.5.2/dowser/vignettes/Quickstart-Vignette.Rmd | 29 dowser-2.5.2/dowser/vignettes/Removing-Problematic-Sequences-Vignette.Rmd |only dowser-2.5.2/dowser/vignettes/Resolve-Light-Chains-Vignette.Rmd |only dowser-2.5.2/dowser/vignettes/Sequences-Vignette.Rmd |only 62 files changed, 212 insertions(+), 2060 deletions(-)
Title: Build and Raytrace 3D Scenes
Description: Render scenes using pathtracing. Build 3D scenes out of spheres, cubes, planes, disks, triangles, cones, curves, line segments, cylinders, ellipsoids, and 3D models in the 'Wavefront' OBJ file format or the PLY Polygon File Format. Supports several material types, textures, multicore rendering, and tone-mapping. Based on the "Ray Tracing in One Weekend" book series. Peter Shirley (2018) <https://raytracing.github.io>.
Author: Tyler Morgan-Wall [aut, cph, cre] ,
Syoyo Fujita [ctb, cph],
Vilya Harvey [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayrender versions 0.41.3 dated 2026-06-16 and 0.42.0 dated 2026-09-15
rayrender-0.41.3/rayrender/tools/benchmarks |only rayrender-0.41.3/rayrender/tools/codex |only rayrender-0.42.0/rayrender/DESCRIPTION | 21 rayrender-0.42.0/rayrender/MD5 | 269 - rayrender-0.42.0/rayrender/NAMESPACE | 24 rayrender-0.42.0/rayrender/NEWS | 4 rayrender-0.42.0/rayrender/NEWS.md |only rayrender-0.42.0/rayrender/R/RcppExports.R | 6 rayrender-0.42.0/rayrender/R/add_object.R | 5 rayrender-0.42.0/rayrender/R/camera.R |only rayrender-0.42.0/rayrender/R/celestial_light.R |only rayrender-0.42.0/rayrender/R/cloud.R |only rayrender-0.42.0/rayrender/R/environment_light.R |only rayrender-0.42.0/rayrender/R/generate_camera_motion.R | 355 + rayrender-0.42.0/rayrender/R/generate_ground.R | 6 rayrender-0.42.0/rayrender/R/infinite_light.R |only rayrender-0.42.0/rayrender/R/media.R |only rayrender-0.42.0/rayrender/R/pig.R | 719 +-- rayrender-0.42.0/rayrender/R/post_process_frame.R | 139 rayrender-0.42.0/rayrender/R/post_process_scene.R | 16 rayrender-0.42.0/rayrender/R/prague_sky.R |only rayrender-0.42.0/rayrender/R/prepare_scene_list.R | 60 rayrender-0.42.0/rayrender/R/preview_snapshot.R |only rayrender-0.42.0/rayrender/R/ray_scene.R | 13 rayrender-0.42.0/rayrender/R/render_animation.R | 570 ++ rayrender-0.42.0/rayrender/R/render_scene.R | 466 +- rayrender-0.42.0/rayrender/R/sky_celestial.R |only rayrender-0.42.0/rayrender/R/sky_light.R |only rayrender-0.42.0/rayrender/R/sky_light_image.R |only rayrender-0.42.0/rayrender/R/util-functions.R | 469 ++ rayrender-0.42.0/rayrender/inst/COPYRIGHTS | 18 rayrender-0.42.0/rayrender/inst/extdata/pig.rds |only rayrender-0.42.0/rayrender/man/add_camera.Rd |only rayrender-0.42.0/rayrender/man/add_infinite_light.Rd |only rayrender-0.42.0/rayrender/man/animation_default_plot_scene.Rd |only rayrender-0.42.0/rayrender/man/calculate_path_interval.Rd |only rayrender-0.42.0/rayrender/man/camera.Rd |only rayrender-0.42.0/rayrender/man/clamp_negative_environment_rgb.Rd |only rayrender-0.42.0/rayrender/man/close_damped_camera_motion.Rd |only rayrender-0.42.0/rayrender/man/cloud.Rd |only rayrender-0.42.0/rayrender/man/damp_camera_motion.Rd |only rayrender-0.42.0/rayrender/man/damp_camera_motion_closed.Rd |only rayrender-0.42.0/rayrender/man/damp_camera_motion_open.Rd |only rayrender-0.42.0/rayrender/man/environment_light_white_xyz.Rd |only rayrender-0.42.0/rayrender/man/generate_camera_motion.Rd | 23 rayrender-0.42.0/rayrender/man/generate_ground.Rd | 6 rayrender-0.42.0/rayrender/man/get_camera.Rd |only rayrender-0.42.0/rayrender/man/get_infinite_light.Rd |only rayrender-0.42.0/rayrender/man/grid_medium.Rd |only rayrender-0.42.0/rayrender/man/homogeneous_medium.Rd |only rayrender-0.42.0/rayrender/man/infinite_light.Rd |only rayrender-0.42.0/rayrender/man/list_cameras.Rd |only rayrender-0.42.0/rayrender/man/list_infinite_lights.Rd |only rayrender-0.42.0/rayrender/man/nanovdb_medium.Rd |only rayrender-0.42.0/rayrender/man/next_preview_snapshot_filename.Rd |only rayrender-0.42.0/rayrender/man/pig.Rd | 105 rayrender-0.42.0/rayrender/man/prepare_environment_light_white_balance.Rd |only rayrender-0.42.0/rayrender/man/prepare_scene_list.Rd | 2 rayrender-0.42.0/rayrender/man/preview_camera.Rd |only rayrender-0.42.0/rayrender/man/remove_camera.Rd |only rayrender-0.42.0/rayrender/man/remove_infinite_light.Rd |only rayrender-0.42.0/rayrender/man/remove_sequential_duplicate_keyframes.Rd |only rayrender-0.42.0/rayrender/man/remove_stalled_path_samples.Rd |only rayrender-0.42.0/rayrender/man/render_animation.Rd | 28 rayrender-0.42.0/rayrender/man/render_scene.Rd | 80 rayrender-0.42.0/rayrender/man/save_preview_snapshot.Rd |only rayrender-0.42.0/rayrender/man/scene_medium_features.Rd |only rayrender-0.42.0/rayrender/man/set_active_camera.Rd |only rayrender-0.42.0/rayrender/man/set_medium.Rd |only rayrender-0.42.0/rayrender/man/sky_light.Rd |only rayrender-0.42.0/rayrender/man/sky_light_image.Rd |only rayrender-0.42.0/rayrender/man/straight_volume_rgb.Rd |only rayrender-0.42.0/rayrender/man/sun_light.Rd |only rayrender-0.42.0/rayrender/man/tween.Rd | 11 rayrender-0.42.0/rayrender/man/tween_camera_orientation.Rd |only rayrender-0.42.0/rayrender/man/tween_spline.Rd |only rayrender-0.42.0/rayrender/man/tween_spline_path.Rd |only rayrender-0.42.0/rayrender/src/RcppExports.cpp | 25 rayrender-0.42.0/rayrender/src/atmosphere_rcpp.cpp |only rayrender-0.42.0/rayrender/src/core/PreviewDisplay.cpp | 2214 +++++++--- rayrender-0.42.0/rayrender/src/core/PreviewDisplay.h | 101 rayrender-0.42.0/rayrender/src/core/adaptivesampler.cpp | 41 rayrender-0.42.0/rayrender/src/core/adaptivesampler.h | 8 rayrender-0.42.0/rayrender/src/core/buildscene.cpp | 152 rayrender-0.42.0/rayrender/src/core/bvh.cpp | 684 ++- rayrender-0.42.0/rayrender/src/core/bvh.h | 49 rayrender-0.42.0/rayrender/src/core/camera.cpp | 537 ++ rayrender-0.42.0/rayrender/src/core/camera.h | 131 rayrender-0.42.0/rayrender/src/core/color.cpp | 219 rayrender-0.42.0/rayrender/src/core/color.h | 6 rayrender-0.42.0/rayrender/src/core/integrator.cpp | 461 +- rayrender-0.42.0/rayrender/src/core/oidn_aux.cpp |only rayrender-0.42.0/rayrender/src/core/oidn_aux.h |only rayrender-0.42.0/rayrender/src/core/oidn_denoiser.cpp |only rayrender-0.42.0/rayrender/src/core/oidn_denoiser.h |only rayrender-0.42.0/rayrender/src/core/ray.h | 10 rayrender-0.42.0/rayrender/src/core/render_jobs.h |only rayrender-0.42.0/rayrender/src/core/render_jobs_tests.cpp |only rayrender-0.42.0/rayrender/src/ext/nanovdb |only rayrender-0.42.0/rayrender/src/hitables/csg.cpp | 1 rayrender-0.42.0/rayrender/src/hitables/curve.cpp | 1 rayrender-0.42.0/rayrender/src/hitables/cylinder.cpp | 8 rayrender-0.42.0/rayrender/src/hitables/disk.cpp | 6 rayrender-0.42.0/rayrender/src/hitables/ellipsoid.cpp | 13 rayrender-0.42.0/rayrender/src/hitables/hitable.cpp | 2 rayrender-0.42.0/rayrender/src/hitables/hitable.h | 44 rayrender-0.42.0/rayrender/src/hitables/hitablelist.cpp | 21 rayrender-0.42.0/rayrender/src/hitables/hitablelist.h | 4 rayrender-0.42.0/rayrender/src/hitables/infinite_area_light.cpp | 44 rayrender-0.42.0/rayrender/src/hitables/infinite_area_light.h | 9 rayrender-0.42.0/rayrender/src/hitables/instance.cpp | 9 rayrender-0.42.0/rayrender/src/hitables/instance.h | 15 rayrender-0.42.0/rayrender/src/hitables/mesh3d.h | 7 rayrender-0.42.0/rayrender/src/hitables/plymesh.h | 7 rayrender-0.42.0/rayrender/src/hitables/raymesh.h | 7 rayrender-0.42.0/rayrender/src/hitables/rectangle.cpp | 42 rayrender-0.42.0/rayrender/src/hitables/rectangle.h | 21 rayrender-0.42.0/rayrender/src/hitables/sphere.cpp | 22 rayrender-0.42.0/rayrender/src/hitables/sphere.h | 7 rayrender-0.42.0/rayrender/src/hitables/triangle.cpp | 95 rayrender-0.42.0/rayrender/src/hitables/triangle.h | 3 rayrender-0.42.0/rayrender/src/hitables/trimesh.h | 7 rayrender-0.42.0/rayrender/src/lights |only rayrender-0.42.0/rayrender/src/materials/material.cpp | 18 rayrender-0.42.0/rayrender/src/materials/material.h | 33 rayrender-0.42.0/rayrender/src/materials/texture.cpp | 180 rayrender-0.42.0/rayrender/src/math/aabb.cpp | 13 rayrender-0.42.0/rayrender/src/math/aabb.h | 44 rayrender-0.42.0/rayrender/src/math/color_conversion_tests.cpp |only rayrender-0.42.0/rayrender/src/math/math.cpp | 8 rayrender-0.42.0/rayrender/src/math/mathinline.h | 4 rayrender-0.42.0/rayrender/src/math/matrix.cpp | 2 rayrender-0.42.0/rayrender/src/math/point3.h | 4 rayrender-0.42.0/rayrender/src/math/sampler.cpp | 14 rayrender-0.42.0/rayrender/src/math/sampler.h | 2 rayrender-0.42.0/rayrender/src/math/transform.cpp | 43 rayrender-0.42.0/rayrender/src/math/transform_error_tests.cpp |only rayrender-0.42.0/rayrender/src/rayrender_types.h |only rayrender-0.42.0/rayrender/src/render_animation_rcpp.cpp | 633 ++ rayrender-0.42.0/rayrender/src/render_scene_rcpp.cpp | 221 rayrender-0.42.0/rayrender/src/volumes |only rayrender-0.42.0/rayrender/tools/build-pig-assets.R |only rayrender-0.42.0/rayrender/tools/config/configure.R | 57 143 files changed, 7531 insertions(+), 2193 deletions(-)
Title: Probabilistic Knowledge Structures
Description: Fitting and testing probabilistic knowledge structures,
especially the basic local independence model (BLIM, Doignon & Flamagne,
1999) and the simple learning model (SLM), using the minimum discrepancy
maximum likelihood (MDML) method (Heller & Wickelmaier, 2013
<doi:10.1016/j.endm.2013.05.145>).
Author: Florian Wickelmaier [aut, cre],
Juergen Heller [aut],
Julian Mollenhauer [aut],
Paul Doerrbecker [aut],
Pasquale Anselmi [ctb],
Debora de Chiusole [ctb],
Andrea Brancaccio [ctb],
Luca Stefanutti [ctb]
Maintainer: Florian Wickelmaier <wickelmaier@web.de>
Diff between pks versions 0.7-0 dated 2026-03-20 and 0.8-0 dated 2026-09-15
ChangeLog | 11 ++++ DESCRIPTION | 19 +++---- MD5 | 28 +++++----- NAMESPACE | 7 ++ R/blim.R | 103 ++++++++++++++++++++++++-------------- R/cdp.R |only R/slm.R | 46 ++++++++-------- build/partial.rdb |binary build/vignette.rds |binary data/DoignonFalmagne7.rda |binary data/Taagepera.rda |binary data/endm.rda |binary inst/doc/EstimationStepByStep.R | 2 inst/doc/EstimationStepByStep.pdf |binary man/cdp.Rd |only man/simulate.blim.Rd | 26 +++++++-- 16 files changed, 150 insertions(+), 92 deletions(-)
Title: Client for the 'GLEIF' API
Description: Download legal entity reference data from the 'Global Legal
Entity Identifier Foundation' ('GLEIF') API. Retrieve Legal Entity
Identifier ('LEI') records, their direct and ultimate parent and child
relationships, accredited issuers ('Local Operating Units'), and
mappings from 'LEI' codes to other identifiers such as 'ISIN', 'BIC',
and 'MIC'. See <https://www.gleif.org/en/lei-data/gleif-api> for
further details.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between gleifr versions 0.2.0 dated 2026-07-18 and 0.3.0 dated 2026-09-15
DESCRIPTION | 12 +- MD5 | 31 +++--- NAMESPACE | 38 ++++---- NEWS.md | 9 + R/assertions.R | 15 ++- R/gleifr.R | 165 ++++++++++++++++++++++++++++++++--- R/httr2.R | 6 + R/utils.R | 4 README.md | 4 man/lei_child_relationships.Rd |only man/lei_children.Rd | 2 man/lei_issuers.Rd | 2 man/lei_modifications.Rd | 2 man/lei_parent_relationship.Rd |only man/lei_records.Rd | 8 + man/lei_registration_authorities.Rd | 10 +- tests/testthat/helper.R |only tests/testthat/test-gleifr.R | 167 ++++++++++++++++++++++++++++++++++-- 18 files changed, 404 insertions(+), 71 deletions(-)
Title: Extensions for 'Flextable'
Description: Build display tables easily by extending the functionality of the
'flextable' package. Features include spanning header, grouping rows,
parsing markdown and so on.
Author: Atsushi Yasumoto [aut, cph, cre] ,
David Gohel [ctb],
Romain Francois [ctb] ,
Tatsuya Shima [ctb]
Maintainer: Atsushi Yasumoto <atusy.rpkg@gmail.com>
Diff between ftExtra versions 0.6.4 dated 2024-05-09 and 0.6.5 dated 2026-09-15
DESCRIPTION | 18 +-- MD5 | 54 +++++---- NEWS.md | 15 ++ R/as-paragraph-md.R | 35 +++++- R/colformat.R | 5 R/md2ast.R | 6 - R/md2df.R | 2 R/metadata.R |only R/pandoc.R | 2 build/vignette.rds |binary inst/doc/format_columns.R | 34 ++++-- inst/doc/format_columns.Rmd | 48 ++++++++ inst/doc/format_columns.html | 188 ++++++++++++++++++++++------------ inst/doc/group-rows.R | 4 inst/doc/group-rows.html | 65 +++++++---- inst/doc/transform-headers.html | 27 +++- inst/lua/blocks-to-inlines.lua | 99 ++++++++++++++++- inst/lua/cite.lua | 12 +- inst/lua/inline-code.lua | 18 +-- inst/lua/math.lua | 66 ++++++----- inst/lua/smart.lua | 12 +- man/as_flextable_methods.Rd | 17 --- man/as_paragraph_md.Rd | 14 +- man/colformat_md.Rd | 16 +- man/reexports.Rd | 4 tests/testthat/test-as-paragraph-md.R | 56 ++++++++++ tests/testthat/test-lists.R |only tests/testthat/test-metadata.R |only tests/testthat/test-pandoc.R |only vignettes/format_columns.Rmd | 48 ++++++++ 30 files changed, 629 insertions(+), 236 deletions(-)
Title: Initiation à La Statistique Avec R
Description: Datasets and functions for the book "Initiation à la Statistique avec R", F. Bertrand and M. Maumy-Bertrand (2022, ISBN:978-2100782826 Dunod, fourth edition).
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between BioStatR versions 4.1.1 dated 2025-09-15 and 4.1.2 dated 2026-09-15
DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/binom.ci.R | 6 ++++++ inst/_pkgdown.yml | 2 ++ man/BioStatR-package.Rd | 5 +++-- tests/testthat/test_binom_ci_values.R | 19 +++---------------- 7 files changed, 31 insertions(+), 31 deletions(-)
Title: Detecting Changes in Autocorrelated and Fluctuating Signals
Description: Detect abrupt changes in time series with local fluctuations as a random walk process and autocorrelated noise as an AR(1) process. See Romano, G., Rigaill, G., Runge, V., Fearnhead, P. (2021) <doi:10.1080/01621459.2021.1909598>.
Author: Gaetano Romano [aut, cre],
Guillem Rigaill [aut],
Vincent Runge [aut],
Paul Fearnhead [aut]
Maintainer: Gaetano Romano <g.romano@lancaster.ac.uk>
Diff between DeCAFS versions 3.3.5 dated 2025-12-08 and 3.3.6 dated 2026-09-15
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 9 +++++++++ build/partial.rdb |binary src/fpopmain.cpp | 10 +++++++--- 5 files changed, 25 insertions(+), 12 deletions(-)
Title: Generator of Synthetic Patient Data for the OMOP Common Data
Model
Description: Tools to generate synthetic patient-level test datasets in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM).
Includes a chat-driven generator backed by large language models and an
interactive 'shiny' designer for editing CDM test sets.
Author: Cesar Barboza [aut, cre] ,
Ger Inberg [aut] ,
Adam Black [aut]
Maintainer: Cesar Barboza <c.barboza@mi-erasmusmc.nl>
Diff between PatientGenerator versions 0.1.4 dated 2026-05-04 and 0.2.4 dated 2026-09-15
PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/care_site.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/cdm_source.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/cohort.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/cohort_definition.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/concept.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/concept_ancestor.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/concept_class.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/concept_relationship.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/concept_synonym.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/condition_era.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/condition_occurrence.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/cost.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/death.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/device_exposure.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/domain.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/dose_era.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/drug_era.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/drug_exposure.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/drug_strength.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/episode.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/episode_event.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/fact_relationship.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/location.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/measurement.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/metadata.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/note.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/note_nlp.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/observation.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/observation_period.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/payer_plan_period.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/person.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/procedure_occurrence.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/provider.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/relationship.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/source_to_concept_map.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/specimen.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/visit_detail.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/visit_occurrence.parquet |only PatientGenerator-0.1.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/vocabulary.parquet |only PatientGenerator-0.2.4/PatientGenerator/DESCRIPTION | 21 PatientGenerator-0.2.4/PatientGenerator/MD5 | 140 PatientGenerator-0.2.4/PatientGenerator/NAMESPACE | 2 PatientGenerator-0.2.4/PatientGenerator/NEWS.md | 26 PatientGenerator-0.2.4/PatientGenerator/R/cdm54data.R | 111 PatientGenerator-0.2.4/PatientGenerator/R/cdmConstructor.R | 456 + PatientGenerator-0.2.4/PatientGenerator/R/cdmTableClass.R | 19 PatientGenerator-0.2.4/PatientGenerator/R/cdmTableModules.R | 144 PatientGenerator-0.2.4/PatientGenerator/R/conceptSearchModule.R | 49 PatientGenerator-0.2.4/PatientGenerator/R/patientChat.R | 22 PatientGenerator-0.2.4/PatientGenerator/R/patientsDesigner.R | 1033 +++- PatientGenerator-0.2.4/PatientGenerator/R/timelineHelpers.R |only PatientGenerator-0.2.4/PatientGenerator/R/updateFunctions.R | 120 PatientGenerator-0.2.4/PatientGenerator/README.md | 49 PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/care_site.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/cdm_source.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/cohort.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/cohort_definition.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/concept.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/concept_ancestor.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/concept_class.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/concept_relationship.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/concept_synonym.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/condition_era.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/condition_occurrence.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/cost.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/death.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/device_exposure.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/domain.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/dose_era.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/drug_era.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/drug_exposure.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/drug_strength.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/episode.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/episode_event.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/fact_relationship.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/location.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/measurement.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/metadata.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/note.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/note_nlp.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/observation.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/observation_period.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/payer_plan_period.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/person.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/procedure_occurrence.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/provider.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/relationship.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/source_to_concept_map.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/specimen.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/visit_detail.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/visit_occurrence.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/cdmTableSpecifications/emptycdm_5.4/vocabulary.rds |only PatientGenerator-0.2.4/PatientGenerator/inst/d3/cdm_timeline.js | 253 + PatientGenerator-0.2.4/PatientGenerator/inst/jsonSchemas/cdm54schema-complete.json | 42 PatientGenerator-0.2.4/PatientGenerator/inst/shiny |only PatientGenerator-0.2.4/PatientGenerator/man/patientChat.Rd | 238 - PatientGenerator-0.2.4/PatientGenerator/man/patientDesigner.Rd | 25 PatientGenerator-0.2.4/PatientGenerator/tests/testthat/helper-internals.R | 5 PatientGenerator-0.2.4/PatientGenerator/tests/testthat/test-cdmConstructor.R | 152 PatientGenerator-0.2.4/PatientGenerator/tests/testthat/test-cdmTableClass.R | 37 PatientGenerator-0.2.4/PatientGenerator/tests/testthat/test-cdmTableModules.R | 244 + PatientGenerator-0.2.4/PatientGenerator/tests/testthat/test-conceptSearchModule.R |only PatientGenerator-0.2.4/PatientGenerator/tests/testthat/test-patientChat.R | 2 PatientGenerator-0.2.4/PatientGenerator/tests/testthat/test-patientDesigner.R | 54 PatientGenerator-0.2.4/PatientGenerator/tests/testthat/test-prompts.R | 68 PatientGenerator-0.2.4/PatientGenerator/tests/testthat/test-timelineHelpers.R |only PatientGenerator-0.2.4/PatientGenerator/tests/testthat/test-xlsx-upload.R |only PatientGenerator-0.2.4/PatientGenerator/tests/testthat/testCases/beta_blocker.json |only PatientGenerator-0.2.4/PatientGenerator/tests/testthat/testCases/patient-chat-test.json | 2374 +++++++++- PatientGenerator-0.2.4/PatientGenerator/tests/testthat/testCases/patient_chat_ovarian_stages.json | 44 PatientGenerator-0.2.4/PatientGenerator/tests/testthat/testCases/pregnancy_test.json |only PatientGenerator-0.2.4/PatientGenerator/tests/testthat/testCases/test_diabetes_patients.json | 842 +-- PatientGenerator-0.2.4/PatientGenerator/tests/testthat/testCases/test_diabetes_patients_30.json | 1315 ++++- PatientGenerator-0.2.4/PatientGenerator/tests/testthat/testData |only 114 files changed, 6528 insertions(+), 1359 deletions(-)
More information about PatientGenerator at CRAN
Permanent link
Title: GeoZarr Conventions for Geospatial Data in Zarr Stores
Description: Large-scale gridded data stores are increasingly using the Zarr
format. GeoZarr is defined in terms of a number of community conventions
built on top of the Zarr specification. These conventions specify how Zarr
metadata is to be interpreted to attach semantic meaning to the data in the
Zarr array providing the metadata. This package implements a number of
community conventions on top of the 'zarr' package, enabling the R community
to use geospatial data stored in Zarr.
Author: Patrick Van Laake [aut, cre]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between geozarr versions 0.1.0 dated 2026-07-23 and 0.2.0 dated 2026-09-15
DESCRIPTION | 8 - MD5 | 60 ++++----- NAMESPACE | 8 + NEWS.md | 9 + R/api.R | 283 ++++++++++++++++++++++++++++++++++++++++++-- R/axis.R | 28 +++- R/convention_cs.R | 61 +++++---- R/convention_proj.R | 29 +++- R/convention_spatial.R | 2 R/coordinate_system.R | 31 ++++ R/coordinates.R | 202 +++++++++++++++++++++++-------- R/domain_geozarr.R | 151 +++++++++++++++++++---- R/geozarr_array.R | 126 +++++++++++++------ R/geozarr_group.R | 2 R/identified_object.R | 31 +++- R/utils.R | 9 + README.md | 97 +++++++++------ man/CoordinateSystem.Rd | 17 ++ man/CoordinateSystemAxis.Rd | 14 +- man/Coordinates.Rd | 57 ++++++-- man/CoordinatesOrdinal.Rd | 10 + man/CoordinatesPacked.Rd | 34 +++-- man/CoordinatesString.Rd | 12 + man/CoordinatesTime.Rd | 29 +++- man/IdentifiedObject.Rd | 18 ++ man/create_geozarr_array.Rd |only man/geozarr_array.Rd | 27 +++- man/geozarr_group.Rd | 4 man/set_convention.Rd |only man/zarr_conv_proj.Rd | 11 + man/zarr_convention_cs.Rd | 36 +++-- tests/testthat/test-api.R | 28 ++-- 32 files changed, 1112 insertions(+), 322 deletions(-)
Title: Extended Dynamic Quantile Linear Models
Description: Bayesian quantile-regression routines for dynamic state-space
models and static regression under the extended asymmetric Laplace
(exAL) error distribution. The dynamic state-space models are extended
dynamic quantile linear models (exDQLMs). The package combines dynamic
exDQLM inference via Laplace-delta variational Bayes (LDVB), Markov
chain Monte Carlo (MCMC), and legacy importance-sampling variational Bayes
(ISVB) with static exAL regression via LDVB and MCMC, reduced asymmetric
Laplace/dynamic quantile linear model (AL/DQLM) paths through fixed
skewness, component builders for trend/seasonality/regression blocks,
static shrinkage priors including ridge, regularized horseshoe, and
'rhs_ns', evidence lower bound (ELBO) diagnostics, optional C++
accelerators, and posterior predictive synthesis across separately fitted
quantiles through 'quantileSynthesis()'. Dynamic exDQLM methods are
described in Barata et al. (2020) <doi:10.1214/21-AOAS1497>.
Author: Raquel Barata [aut, cre],
Raquel Prado [ths],
Bruno Sanso [ths],
Antonio Aguirre [aut]
Maintainer: Raquel Barata <raquel.a.barata@gmail.com>
Diff between exdqlm versions 1.1.1 dated 2026-08-28 and 1.1.2 dated 2026-09-15
DESCRIPTION | 6 +- MD5 | 16 +++---- NEWS.md | 14 ++++++ R/exdqlm-package.R | 10 ++++ R/exdqlmLDVB.R | 2 README.md | 10 ++++ man/exdqlm-package.Rd | 12 +++++ src/mcmc_ffbs.cpp | 36 ++++++++++++----- tests/testthat/test-rng-repeatability.R | 66 ++++++++++++++++++++++++++++++++ 9 files changed, 146 insertions(+), 26 deletions(-)
Title: Trajectory Miner: a Sequence Analysis Toolkit
Description: Set of sequence analysis tools for manipulating, describing and rendering categorical sequences, and more generally mining sequence data in the field of social sciences. Although this sequence analysis package is primarily intended for state or event sequences that describe time use or life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and functions for extracting the most frequent event subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
Author: Alexis Gabadinho [aut, cph],
Matthias Studer [aut, cph] ,
Nicolas Mueller [aut],
Reto Buergin [aut] ,
Pierre-Alexandre Fonta [ctb],
Gilbert Ritschard [aut, cre, cph]
Maintainer: Gilbert Ritschard <gilbert.ritschard@unige.ch>
Diff between TraMineR versions 2.2-13 dated 2025-12-14 and 2.2-14 dated 2026-09-15
TraMineR-2.2-13/TraMineR/man/str.eseq.Rd |only TraMineR-2.2-14/TraMineR/DESCRIPTION | 10 - TraMineR-2.2-14/TraMineR/MD5 | 74 +++---- TraMineR-2.2-14/TraMineR/NAMESPACE | 18 + TraMineR-2.2-14/TraMineR/NEWS | 44 ++++ TraMineR-2.2-14/TraMineR/R/TraMineR-checkcost.R | 95 +++++++--- TraMineR-2.2-14/TraMineR/R/TraMineR-legend.R | 12 - TraMineR-2.2-14/TraMineR/R/seqMD.R | 29 +-- TraMineR-2.2-14/TraMineR/R/seqcost.R | 34 ++- TraMineR-2.2-14/TraMineR/R/seqdist-OMstran.R | 12 - TraMineR-2.2-14/TraMineR/R/seqdist.R | 27 ++ TraMineR-2.2-14/TraMineR/R/seqe.R | 92 +++++++-- TraMineR-2.2-14/TraMineR/R/seqlegend.R | 16 - TraMineR-2.2-14/TraMineR/R/seqmaintokens.R | 8 TraMineR-2.2-14/TraMineR/R/seqplot.R | 9 TraMineR-2.2-14/TraMineR/R/seqplotMD.R | 13 + TraMineR-2.2-14/TraMineR/R/stslist.statd-methods.R | 4 TraMineR-2.2-14/TraMineR/build/partial.rdb |binary TraMineR-2.2-14/TraMineR/build/vignette.rds |binary TraMineR-2.2-14/TraMineR/data/ex1.rda |binary TraMineR-2.2-14/TraMineR/data/ex2.rda |binary TraMineR-2.2-14/TraMineR/data/famform.rda |binary TraMineR-2.2-14/TraMineR/inst/NEWS.Rd | 54 +++++ TraMineR-2.2-14/TraMineR/inst/doc/TraMineR-state-sequence.R | 2 TraMineR-2.2-14/TraMineR/inst/doc/TraMineR-state-sequence.Rnw | 2 TraMineR-2.2-14/TraMineR/inst/doc/TraMineR-state-sequence.pdf |binary TraMineR-2.2-14/TraMineR/man/TraMineR-package.Rd | 2 TraMineR-2.2-14/TraMineR/man/as-character-eseq.Rd |only TraMineR-2.2-14/TraMineR/man/biofam.Rd | 6 TraMineR-2.2-14/TraMineR/man/seqMD.Rd | 12 - TraMineR-2.2-14/TraMineR/man/seqcost.Rd | 10 - TraMineR-2.2-14/TraMineR/man/seqdist.Rd | 4 TraMineR-2.2-14/TraMineR/man/seqe.Rd | 75 ++++++- TraMineR-2.2-14/TraMineR/man/seqlegend.Rd | 21 ++ TraMineR-2.2-14/TraMineR/man/seqmaintokens.Rd | 9 TraMineR-2.2-14/TraMineR/man/seqpcplot.Rd | 4 TraMineR-2.2-14/TraMineR/man/seqplot.Rd | 10 - TraMineR-2.2-14/TraMineR/man/seqplotMD.Rd | 13 + TraMineR-2.2-14/TraMineR/vignettes/TraMineR-state-sequence.Rnw | 2 39 files changed, 531 insertions(+), 192 deletions(-)
Title: Ecological Limit Function Model Generation and Analysis Toolkit
Description: A toolset for generating Ecological Limit Function (ELF) models and evaluating potential species loss resulting from flow change, based on the 'elfgen' framework. ELFs describe the relation between aquatic species richness (fish or benthic macroinvertebrates) and stream size characteristics (streamflow or drainage area). Journal publications are available outlining framework methodology (Kleiner et al. (2020) <doi:10.1111/1752-1688.12876>) and application (Rapp et al. (2020) <doi:10.1111/1752-1688.12877>).
Author: Joseph Kleiner [aut] ,
Robert Burgholzer [ctb] ,
Connor Brogan [cre]
Maintainer: Connor Brogan <connor.brogan@deq.virginia.gov>
Diff between elfgen versions 2.3.5 dated 2026-05-23 and 2.3.6 dated 2026-09-15
DESCRIPTION | 11 ++++++----- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- NEWS.md | 3 +++ R/data.R | 2 +- R/elfdata.R | 4 ++-- README.md | 2 +- man/watershed.df.Rd | 2 +- tests/testthat/test-elfdata.R | 10 ---------- 9 files changed, 23 insertions(+), 29 deletions(-)
Title: Pattern Estimation and Identification for Dyadic Sequences Using
Transition Matrices in R
Description: Provides methods for analyzing categorical dyadic sequences using transition matrices within the Longitudinal Actor-Partner Interdependence Model and Markov-chain framework. The package supports empirical transition counts, maximum likelihood estimation of transition probabilities, and identification of univariate and bivariate patterns of interaction in dyadic sequences.
Author: Mattia Boellenruecher [aut, cre, cph] ,
Megane Bollenruecher [aut] ,
Jean-Philippe Antonietti [aut]
Maintainer: Mattia Boellenruecher <mboellenruec@student.ethz.ch>
Diff between dyadicMarkov versions 0.1.2 dated 2026-08-21 and 0.1.3 dated 2026-09-15
DESCRIPTION | 6 MD5 | 91 - NAMESPACE | 6 NEWS.md | 30 R/apim-bivariate.R | 75 - R/apim-univariate.R | 19 R/data.R | 26 R/dyadicMarkov-package.R | 6 R/helpers-core.R | 11 R/plot-methods.R |only R/s3-methods.R | 1175 +++++++++++++++--- R/srr-stats-standards.R | 44 R/utils-validation.R | 38 build/vignette.rds |binary data/data_complete_180.rda |only data/data_complete_30.rda |only data/data_complete_60.rda |only data/data_complete_720.rda |only data/data_complete_90.rda |only inst/doc/bivariate-workflow.R | 21 inst/doc/bivariate-workflow.Rmd | 57 inst/doc/bivariate-workflow.html | 276 ++-- inst/doc/dyadicMarkov-introduction.Rmd | 32 inst/doc/dyadicMarkov-introduction.html | 128 - inst/doc/sensitivity-analysis.R |only inst/doc/sensitivity-analysis.Rmd |only inst/doc/sensitivity-analysis.html |only inst/doc/univariate-workflow.R | 24 inst/doc/univariate-workflow.Rmd | 46 inst/doc/univariate-workflow.html | 273 ++-- man/bivariateCase.Rd | 4 man/completePattern.Rd | 9 man/countEmp.Rd | 9 man/countEmpBivariate.Rd | 14 man/dyadicMarkov-package.Rd | 4 man/mleEstimation.Rd | 2 man/partialPattern.Rd | 8 man/plot.dyadic_pattern.Rd |only man/sensitivity_simulation_data.Rd |only man/univariatePattern.Rd | 13 tests/testthat/test-countEmpBivariate-deterministic.R | 52 tests/testthat/test-exported-workflows.R | 3 tests/testthat/test-extended-sensitivity.R |only tests/testthat/test-mleEstimation-known-counts.R | 130 + tests/testthat/test-plot-methods.R |only tests/testthat/test-s3-classes.R | 10 tests/testthat/test-s3-latex.R |only tests/testthat/test-s3-matrix-classes.R | 304 +++- tests/testthat/test-s3-summary-tables.R |only tests/testthat/test-sequence-length-sensitivity.R |only tests/testthat/test-validation-errors.R | 102 + vignettes/bivariate-workflow.Rmd | 57 vignettes/dyadicMarkov-introduction.Rmd | 32 vignettes/sensitivity-analysis.Rmd |only vignettes/univariate-workflow.Rmd | 46 55 files changed, 2281 insertions(+), 902 deletions(-)
Title: Burn-in-Free Simulation and Analysis of Gaussian VARMA Models
Description: Simulates Gaussian vector autoregressive-moving-average
time-series models without a burn-in period by drawing startup shocks from
their model-implied conditional distribution. Also provides model
test cases, autocovariances, spectral radii, and impulse responses.
Author: Kristjan Jonasson [aut, cre]
Maintainer: Kristjan Jonasson <jonasson@hi.is>
Diff between varmapack versions 0.1.1 dated 2026-09-12 and 0.1.2 dated 2026-09-15
DESCRIPTION | 6 +-- MD5 | 15 ++++----- NEWS.md | 8 ++++ README.md | 5 +++ inst/examples/EuStockMarkets.R |only src/blasref.h | 66 ++++++++++++++++++++++++----------------- src/sb03md-complete.F | 2 + src/sb03mdGateway.c | 4 ++ src/varmapack.h | 2 - 9 files changed, 70 insertions(+), 38 deletions(-)
Title: Airborne Point Cloud Data Manipulation and Visualization for
Forestry Applications
Description: Airborne point cloud interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] ,
Florian De Boissieu [ctb] ,
Andrew Sanchez Meador [ctb] for
segment_snags),
Bourdon Jean-Francois [ctb] for
track_sensor),
Gatziolis Demetrios [ctb] for
track_sensor),
Leon Steinmeier [c [...truncated...]
Maintainer: Jean-Romain Roussel <info@r-lidar.com>
This is a re-admission after prior archival of version 4.3.2 dated 2026-04-21
Diff between lidR versions 4.3.2 dated 2026-04-21 and 4.3.3 dated 2026-09-15
DESCRIPTION | 14 +- MD5 | 200 +++++++++++++++---------------- NAMESPACE | 26 ++-- NEWS.md | 4 R/Class-LAScatalog.R | 3 R/algorithm-dec.R | 4 R/algorithm-dsm.R | 4 R/algorithm-dtm.R | 3 R/algorithm-gnd.R | 4 R/algorithm-itd.R | 2 R/algorithm-its.R | 4 R/algorithm-noi.R | 1 R/algorithm-out.R | 2 R/algorithm-shp.R | 1 R/algorithm-snag.R | 1 R/algorithm-trk.R | 2 R/backward_compatibility.R | 1 R/catalog_apply.R | 1 R/classify.R | 1 R/deprecated.R | 1 R/engine.R | 1 R/engine_options.R | 1 R/io_readLAS.R | 3 R/las_compression.R | 1 R/las_tools.R | 1 R/methods-LAS.R | 1 R/methods-LASheader.R | 1 R/metrics_point.R | 1 R/metrics_stdmetrics.R | 1 R/normalize.R | 1 R/plot.R | 1 R/plot.s3.R | 2 R/plugins.R | 1 R/print.R | 1 R/segment.R | 1 R/st_coordinates.R | 10 - R/utils_chm.R | 1 R/utils_threads.R | 1 README.md | 54 +++----- build/vignette.rds |binary inst/doc/lidR-LAS-class.html | 12 + inst/doc/lidR-LAScatalog-class.html | 201 ++++++++++++++++---------------- inst/doc/lidR-LAScatalog-engine.html | 12 + man/Extract.Rd | 3 man/LAScatalog-class.Rd | 3 man/as.Rd | 3 man/asprs.Rd | 37 ----- man/catalog_apply.Rd | 3 man/classify.Rd | 3 man/deprecated.Rd | 3 man/dsm_pitfree.Rd | 5 man/dsm_point2raster.Rd | 5 man/dsm_spikefree.Rd | 5 man/dsm_tin.Rd | 5 man/dtm_idw.Rd | 5 man/dtm_kriging.Rd | 5 man/dtm_tin.Rd | 5 man/engine.Rd | 8 - man/engine_options.Rd | 5 man/gnd_csf.Rd | 7 - man/gnd_mcc.Rd | 7 - man/gnd_pmf.Rd | 7 - man/itd_lmf.Rd | 5 man/itd_manual.Rd | 5 man/its_dalponte2016.Rd | 7 - man/its_li2012.Rd | 5 man/its_silva2016.Rd | 7 - man/its_watershed.Rd | 7 - man/las_check.Rd | 2 man/las_compression.Rd | 3 man/las_utilities.Rd | 7 - man/lidR-package.Rd | 1 man/noise_ivf.Rd | 5 man/noise_sor.Rd | 5 man/normalize.Rd | 3 man/old_spatial_packages.Rd | 3 man/pitfill_stonge2008.Rd | 3 man/plot.Rd | 3 man/plot.lasmetrics3d.Rd | 3 man/plot_3d.Rd | 3 man/plugins.Rd | 3 man/point_metrics.Rd | 3 man/ptd.Rd | 5 man/range_correction.Rd | 3 man/sample_homogenize.Rd | 5 man/sample_maxima.Rd | 10 - man/sample_per_voxel.Rd | 5 man/sample_random.Rd | 5 man/segment.Rd | 3 man/set_lidr_threads.Rd | 3 man/shape_detection.Rd | 3 man/snag_wing2015.Rd | 3 man/st_coordinates.Rd | 6 man/stdmetrics.Rd | 22 --- man/tools.Rd | 3 man/track_sensor_gatziolis2019.Rd | 3 man/track_sensor_roussel2020.Rd | 3 tests/testthat/Rplots.pdf |binary tests/testthat/test-catalog_intersect.R | 4 tests/testthat/test-delaunay.R | 6 tests/testthat/test-utils_geometry.R | 6 101 files changed, 518 insertions(+), 375 deletions(-)
Title: Read and Play Digital Music (MIDI)
Description: Bindings to 'libfluidsynth' to parse and synthesize MIDI files. It can
read MIDI into a data frame, play it on the local audio device, or convert into
an audio file.
Author: Jeroen Ooms [aut, cre] ,
S. Christian Collins [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between fluidsynth versions 1.0.3 dated 2026-06-11 and 1.0.4 dated 2026-09-15
DESCRIPTION | 6 +++--- MD5 | 3 ++- NEWS |only 3 files changed, 5 insertions(+), 4 deletions(-)
Title: Biological Graph Signal Processing for Spatial Data Analysis
Description: Implementation of Graph Signal Processing (GSP) methods including Spectral
Graph Wavelet Transform (SGWT) for analyzing spatial patterns in biological data.
Based on Hammond, Vandergheynst, and Gribonval (2011) <doi:10.1016/j.acha.2010.04.005>. Provides tools for multi-scale analysis of biology spatial signals, including forward and inverse transforms, energy analysis, and visualization functions tailored for biological applications. Biological application example is on Stephanie, Yao, Yuzhou (2024) <doi:10.1101/2024.12.20.629650>.
Author: Yuzhou Chang [aut, cre]
Maintainer: Yuzhou Chang <cyz931123@gmail.com>
Diff between BioGSP versions 1.0.0 dated 2026-02-02 and 1.0.1 dated 2026-09-15
DESCRIPTION | 10 +++++----- MD5 | 7 ++++--- NEWS.md |only build/vignette.rds |binary inst/doc/sgwt_simulation_demo.html | 23 +++++++++++------------ 5 files changed, 20 insertions(+), 20 deletions(-)
Title: Signature Analyzer for Targeted Sequencing (SATS)
Description: Performs mutational signature analysis for tumors profiled by targeted sequencing. Unlike the canonical analysis of mutational signatures, SATS factorizes the mutation count matrix into a panel-context matrix (measuring the number of mutation opportunities per million base pairs for each tumor), a signature profile matrix, and a signature activity matrix. SATS also calculates the expected number of mutations attributed to each signature, namely the signature burden, for each tumor profiled by targeted sequencing. For more details see Lee et al. (2024) <doi:10.1101/2023.05.18.23290188>.
Author: DongHyuk Lee [aut],
Bin Zhu [aut],
Bill Wheeler [cre]
Maintainer: Bill Wheeler <wheelerb@imsweb.com>
Diff between SATS versions 1.0.10 dated 2026-07-09 and 1.0.11 dated 2026-09-15
SATS-1.0.10/SATS/man/CalculateSigExpectancy.Rd |only SATS-1.0.11/SATS/DESCRIPTION | 14 SATS-1.0.11/SATS/MD5 | 46 - SATS-1.0.11/SATS/NAMESPACE | 4 SATS-1.0.11/SATS/R/L_matrix_Generation.R | 219 ++---- SATS-1.0.11/SATS/R/V_matrix_Generation.R |only SATS-1.0.11/SATS/R/constants.R |only SATS-1.0.11/SATS/R/input_conversion.R |only SATS-1.0.11/SATS/R/mappingSignature.R | 27 SATS-1.0.11/SATS/R/source.R | 35 SATS-1.0.11/SATS/R/source_check.R | 356 +++++++++- SATS-1.0.11/SATS/inst/extdata/refitting_examples |only SATS-1.0.11/SATS/man/CalculateSignatureBurdens.Rd |only SATS-1.0.11/SATS/man/EstimateSigActivity.Rd | 49 - SATS-1.0.11/SATS/man/GenerateLMatrix.Rd | 76 +- SATS-1.0.11/SATS/man/GeneratePanelSize.Rd | 109 +-- SATS-1.0.11/SATS/man/GenerateVMatrix.Rd |only SATS-1.0.11/SATS/man/MappingSignature.Rd | 25 SATS-1.0.11/SATS/man/ReadBEDAsPanelInfo.Rd |only SATS-1.0.11/SATS/man/ReadVCFAsMutationRecord.Rd |only SATS-1.0.11/SATS/man/SATS-package.Rd | 30 SATS-1.0.11/SATS/man/SimData.Rd | 28 SATS-1.0.11/SATS/man/ValidateSATSInputs.Rd |only SATS-1.0.11/SATS/src/source.c | 13 SATS-1.0.11/SATS/tests/testthat/test-CalculateSignatureBurdens.R | 23 SATS-1.0.11/SATS/tests/testthat/test-EstimateSigActivity.R | 48 + SATS-1.0.11/SATS/tests/testthat/test-GenerateVMatrix.R |only SATS-1.0.11/SATS/tests/testthat/test-ValidateSATSInputs.R |only SATS-1.0.11/SATS/tests/testthat/test-input-conversion.R |only 29 files changed, 762 insertions(+), 340 deletions(-)
Title: Install and Load the 'probaverse' Packages
Description: The 'probaverse' is a suite of packages designed to facilitate
creating advanced statistical models through probability distributions.
These packages work best when loaded together because they share a common
design philosophy and focus on different aspects of developing statistical
models. Inspired by the 'tidyverse' package, the 'probaverse' package
makes it easy to load the entire suite of 'probaverse' packages together.
Author: Vincenzo Coia [aut, cre, cph]
Maintainer: Vincenzo Coia <vincenzo.coia@gmail.com>
Diff between probaverse versions 0.1.0 dated 2025-12-14 and 0.1.1 dated 2026-09-15
DESCRIPTION | 14 ++++++++------ MD5 | 6 +++--- NEWS.md | 5 +++++ man/probaverse-package.Rd | 2 +- 4 files changed, 17 insertions(+), 10 deletions(-)
Title: A Multivariate Emulator
Description: A multivariate generalization of the emulator package.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between multivator versions 1.1-11 dated 2023-08-22 and 1.2-1 dated 2026-09-15
multivator-1.1-11/multivator/build/multivator.pdf |only multivator-1.1-11/multivator/build/stage23.rdb |only multivator-1.2-1/multivator/DESCRIPTION | 27 ++- multivator-1.2-1/multivator/MD5 | 52 +++---- multivator-1.2-1/multivator/NAMESPACE | 123 +++++++++++++++--- multivator-1.2-1/multivator/R/aaa_multivator.R | 43 +++++- multivator-1.2-1/multivator/R/aab_mhp.R | 8 + multivator-1.2-1/multivator/R/aac_mdm.R | 49 ++++++- multivator-1.2-1/multivator/R/aad_experiment.R | 6 multivator-1.2-1/multivator/build/partial.rdb |binary multivator-1.2-1/multivator/build/vignette.rds |binary multivator-1.2-1/multivator/data/e3mg.rda |binary multivator-1.2-1/multivator/data/mcneall.rda |binary multivator-1.2-1/multivator/data/mtoys.rda |binary multivator-1.2-1/multivator/inst/doc/cias.R | 2 multivator-1.2-1/multivator/inst/doc/cias.Rnw | 2 multivator-1.2-1/multivator/inst/doc/cias.pdf |binary multivator-1.2-1/multivator/inst/doc/multivator.R | 6 multivator-1.2-1/multivator/inst/doc/multivator.Rnw | 11 - multivator-1.2-1/multivator/inst/doc/multivator.pdf |binary multivator-1.2-1/multivator/man/betahat.Rd | 2 multivator-1.2-1/multivator/man/mdm.Rd | 7 + multivator-1.2-1/multivator/man/multivator-package.Rd | 2 multivator-1.2-1/multivator/man/ss.Rd | 4 multivator-1.2-1/multivator/tests |only multivator-1.2-1/multivator/vignettes/cias.Rnw | 2 multivator-1.2-1/multivator/vignettes/multivator.Rnw | 11 - multivator-1.2-1/multivator/vignettes/multivator.bib | 22 +-- 28 files changed, 285 insertions(+), 94 deletions(-)
Title: Orchestration of Data Pipelines
Description: Framework for creating and orchestrating data pipelines. Organize, orchestrate, and monitor multiple pipelines in a single project. Use tags to decorate functions with scheduling parameters and configuration.
Author: Will Hipson [cre, aut, cph] ,
Ryan Garnett [aut, ctb, cph]
Maintainer: Will Hipson <will.e.hipson@gmail.com>
Diff between maestro versions 1.3.0 dated 2026-08-31 and 1.3.1 dated 2026-09-15
DESCRIPTION | 8 +- MD5 | 76 +++++++++++------------ NAMESPACE | 8 +- NEWS.md | 14 +++- R/get_run_sequence.R | 2 R/get_slot_usage.R | 35 +++++++++- README.md | 17 ++--- inst/doc/maestro-1-quick-start.Rmd | 2 inst/doc/maestro-1-quick-start.html | 6 - inst/doc/maestro-2-motivation-concepts.html | 4 - inst/doc/maestro-2-motivation-concepts.qmd | 4 - inst/doc/maestro-3-advanced-scheduling.R | 2 inst/doc/maestro-3-advanced-scheduling.html | 6 - inst/doc/maestro-3-advanced-scheduling.qmd | 4 - inst/doc/maestro-4-directed-acyclic-graphs.Rmd | 4 - inst/doc/maestro-4-directed-acyclic-graphs.html | 24 +++---- inst/doc/maestro-4b-directed-acyclic-graphs.html | 40 ++++++------ inst/doc/maestro-5-logging.html | 64 +++++++++---------- inst/doc/maestro-5-logging.qmd | 2 inst/doc/maestro-6-deployment.html | 2 inst/doc/maestro-6-deployment.qmd | 2 inst/doc/maestro-7-tag-reference.html | 8 +- inst/doc/maestro-7-tag-reference.qmd | 8 +- inst/doc/maestro-8-conditionals.R | 4 - inst/doc/maestro-8-conditionals.Rmd | 8 +- inst/doc/maestro-8-conditionals.html | 46 ++++++------- man/figures/README-/unnamed-chunk-3.svg | 2 man/get_run_sequence.Rd | 2 man/get_slot_usage.Rd | 14 +++- tests/testthat/_snaps/get_slot_usage.md | 32 ++++----- tests/testthat/test-get_slot_usage.R | 26 ++++++- vignettes/maestro-1-quick-start.Rmd | 2 vignettes/maestro-2-motivation-concepts.qmd | 4 - vignettes/maestro-3-advanced-scheduling.qmd | 4 - vignettes/maestro-4-directed-acyclic-graphs.Rmd | 4 - vignettes/maestro-5-logging.qmd | 2 vignettes/maestro-6-deployment.qmd | 2 vignettes/maestro-7-tag-reference.qmd | 8 +- vignettes/maestro-8-conditionals.Rmd | 8 +- 39 files changed, 290 insertions(+), 220 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-09 1.4
2016-02-05 1.3
2016-01-28 1.1
Title: ODBC Database Access
Description: An ODBC database interface.
Author: Brian Ripley [aut, cre],
Michael Lapsley [aut]
Maintainer: Brian Ripley <Brian.Ripley@R-project.org>
Diff between RODBC versions 1.3-26.2 dated 2026-08-11 and 1.3-26.3 dated 2026-09-15
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/RODBC.Rnw | 20 ++++++++++---------- inst/doc/RODBC.pdf |binary vignettes/RODBC.Rnw | 20 ++++++++++---------- 6 files changed, 30 insertions(+), 30 deletions(-)
More information about Entropic.Scree at CRAN
Permanent link
Title: Meta-Analysis Package for R
Description: A comprehensive collection of functions for conducting meta-analyses in R. The package includes functions to calculate various effect sizes or outcome measures, fit equal-, fixed-, random-, and mixed-effects models to such data, carry out moderator and meta-regression analyses, and create various types of meta-analytical plots (e.g., forest, funnel, radial, L'Abbe, Baujat, bubble, and GOSH plots). For meta-analyses of binomial and person-time data, the package also provides functions that implement specialized methods, including the Mantel-Haenszel method, Peto's method, and a variety of suitable generalized linear (mixed-effects) models (i.e., mixed-effects logistic and Poisson regression models). Finally, the package provides functionality for fitting meta-analytic multivariate/multilevel models that account for non-independent sampling errors and/or true effects (e.g., due to the inclusion of multiple treatment studies, multiple endpoints, or other forms of clustering). Network meta [...truncated...]
Author: Wolfgang Viechtbauer [aut, cre]
Maintainer: Wolfgang Viechtbauer <wvb@metafor-project.org>
Diff between metafor versions 5.0-1 dated 2026-04-26 and 5.2-1 dated 2026-09-15
DESCRIPTION | 8 MD5 | 301 ++++++------- NAMESPACE | 1 NEWS.md | 36 + R/addpoly.default.r | 37 + R/addpoly.predict.rma.r | 2 R/addpoly.rma.r | 2 R/baujat.rma.r | 5 R/blup.rma.uni.r | 2 R/cmicalc.r |only R/confint.rma.uni.r | 8 R/conv.2x2.r | 34 - R/conv.delta.r | 16 R/conv.fivenum.r | 16 R/conv.wald.r | 18 R/deltamethod.r | 103 ++++ R/escalc.r | 234 ++++++++-- R/forest.cumul.rma.r | 40 + R/forest.default.r | 46 + R/forest.rma.r | 92 ++- R/fsn.r | 4 R/funnel.default.r | 5 R/funnel.rma.r | 5 R/hettest.r |only R/labbe.rma.r | 21 R/llplot.r | 2 R/methods.vcovmat.r | 10 R/misc.func.hidden.escalc.r | 83 ++- R/misc.func.hidden.hetttest.r |only R/misc.func.hidden.profile.r | 4 R/misc.func.hidden.r | 42 + R/misc.func.hidden.rma.uni.r | 92 +++ R/plot.cumul.rma.r | 16 R/plot.gosh.rma.r | 5 R/plot.infl.rma.uni.r | 5 R/plot.permutest.rma.uni.r | 5 R/plot.rma.mh.r | 5 R/plot.rma.peto.r | 5 R/plot.rma.uni.r | 5 R/predict.rma.ls.r | 45 + R/predict.rma.r | 61 +- R/print.hettest.r |only R/print.infl.rma.uni.r | 4 R/print.list.rma.r | 8 R/print.rma.mv.r | 2 R/qqnorm.rma.mh.r | 5 R/qqnorm.rma.peto.r | 5 R/qqnorm.rma.uni.r | 5 R/radial.rma.r | 5 R/ranktest.r | 4 R/rcalc.r | 2 R/regtest.r | 4 R/rma.glmm.r | 2 R/rma.mh.r | 4 R/rma.mv.r | 8 R/rma.peto.r | 2 R/rma.uni.r | 101 +++- R/tes.r | 8 R/to.long.r | 3 R/to.table.r | 3 R/transf.r | 41 + R/trimfill.rma.uni.r | 2 R/vcov.rma.r | 16 R/zzz.r | 2 README.md | 2 build/metafor.pdf |binary build/stage23.rdb |binary build/vignette.rds |binary inst/doc/diagram.pdf |binary man/aggregate.escalc.Rd | 28 - man/anova.rma.Rd | 2 man/bldiag.Rd | 5 man/blsplit.Rd | 2 man/blup.Rd | 19 man/cmicalc.Rd |only man/confint.rma.Rd | 2 man/conv.2x2.Rd | 2 man/conv.delta.Rd | 24 - man/conv.fivenum.Rd | 4 man/conv.wald.Rd | 30 - man/cumul.Rd | 20 man/deltamethod.Rd | 10 man/emmprep.Rd | 2 man/escalc.Rd | 130 +++-- man/fitstats.Rd | 8 man/forest.Rd | 6 man/forest.cumul.rma.Rd | 11 man/forest.default.Rd | 33 - man/forest.rma.Rd | 35 - man/formatters.Rd | 14 man/fsn.Rd | 34 - man/funnel.Rd | 32 - man/gosh.Rd | 2 man/hc.Rd | 13 man/hettest.Rd |only man/influence.rma.mv.Rd | 10 man/influence.rma.uni.Rd | 4 man/labbe.Rd | 16 man/leave1out.Rd | 8 man/llplot.Rd | 16 man/metafor-package.Rd | 18 man/methods.confint.rma.Rd | 2 man/misc-models.Rd | 18 man/misc-options.Rd | 4 man/misc-recs.Rd | 6 man/permutest.Rd | 8 man/plot.cumul.rma.Rd | 8 man/plot.gosh.rma.Rd | 2 man/predict.rma.Rd | 25 - man/print.escalc.Rd | 16 man/print.hc.rma.uni.Rd | 2 man/print.regtest.rma.Rd | 2 man/print.rma.Rd | 10 man/qqnorm.rma.Rd | 2 man/radial.Rd | 18 man/ranktest.Rd | 12 man/regplot.Rd | 16 man/regtest.Rd | 20 man/reporter.Rd | 2 man/residuals.rma.Rd | 8 man/rma.glmm.Rd | 16 man/rma.mh.Rd | 24 - man/rma.mv.Rd | 46 - man/rma.peto.Rd | 8 man/rma.uni.Rd | 54 +- man/se.Rd | 2 man/selmodel.Rd | 30 - man/simulate.rma.Rd | 12 man/tes.Rd | 42 - man/to.long.Rd | 8 man/to.table.Rd | 8 man/transf.Rd | 2 man/trimfill.Rd | 6 man/vcalc.Rd | 74 +-- man/vcov.rma.Rd | 6 man/weights.rma.Rd | 4 tests/testthat/test_analysis_example_dersimonian2007.r | 2 tests/testthat/test_analysis_example_gleser2009.r | 20 tests/testthat/test_analysis_example_konstantopoulos2011.r | 2 tests/testthat/test_analysis_example_law2016.r | 4 tests/testthat/test_analysis_example_morris2008.r | 2 tests/testthat/test_analysis_example_raudenbush2009.r | 8 tests/testthat/test_analysis_example_rothman2008.r | 34 - tests/testthat/test_misc_deltamethod.r |only tests/testthat/test_misc_escalc.r | 4 tests/testthat/test_misc_fitstats.r | 6 tests/testthat/test_misc_influence.r | 6 tests/testthat/test_misc_matreg.r | 2 tests/testthat/test_misc_permutest.r | 2 tests/testthat/test_misc_rma_mv.r | 4 tests/testthat/test_misc_to_long_table_wide.r | 22 tests/testthat/test_misc_vcalc.r | 6 tests/testthat/test_misc_vcov.r | 4 tests/testthat/test_misc_vec2mat.r | 8 tests/testthat/test_plots_caterpillar_plot.r | 8 155 files changed, 1847 insertions(+), 1019 deletions(-)
Title: Working with Choice Data
Description: Offers a set of objects tailored to simplify working with choice
data. It enables the computation of choice probabilities and the
likelihood of various types of choice models based on given data.
Author: Lennart Oelschlaeger [aut, cre]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between choicedata versions 0.1.0 dated 2025-10-09 and 0.2.0 dated 2026-09-15
choicedata-0.1.0/choicedata/data/train_choice.rda |only choicedata-0.1.0/choicedata/data/travel_mode_choice.rda |only choicedata-0.1.0/choicedata/man/choiceprob_logit.Rd |only choicedata-0.1.0/choicedata/man/choiceprob_probit.Rd |only choicedata-0.1.0/choicedata/man/train_choice.Rd |only choicedata-0.1.0/choicedata/man/travel_mode_choice.Rd |only choicedata-0.1.0/choicedata/tests/testthat/_snaps |only choicedata-0.2.0/choicedata/DESCRIPTION | 21 choicedata-0.2.0/choicedata/MD5 | 126 choicedata-0.2.0/choicedata/NAMESPACE | 121 choicedata-0.2.0/choicedata/NEWS.md | 44 choicedata-0.2.0/choicedata/R/RcppExports.R |only choicedata-0.2.0/choicedata/R/choice_alternatives.R | 236 choicedata-0.2.0/choicedata/R/choice_covariates.R | 1084 +- choicedata-0.2.0/choicedata/R/choice_data.R | 2472 +++-- choicedata-0.2.0/choicedata/R/choice_effects.R | 678 - choicedata-0.2.0/choicedata/R/choice_formula.R | 914 +- choicedata-0.2.0/choicedata/R/choice_identifiers.R | 784 - choicedata-0.2.0/choicedata/R/choice_likelihood.R | 616 - choicedata-0.2.0/choicedata/R/choice_parameters.R | 1528 ++- choicedata-0.2.0/choicedata/R/choice_preferences.R | 450 - choicedata-0.2.0/choicedata/R/choice_probabilities.R | 4148 +++++----- choicedata-0.2.0/choicedata/R/choice_responses.R | 752 + choicedata-0.2.0/choicedata/R/choicedata-checks.R | 1365 ++- choicedata-0.2.0/choicedata/R/choicedata-package.R | 105 choicedata-0.2.0/choicedata/R/datasets.R | 214 choicedata-0.2.0/choicedata/README.md | 571 - choicedata-0.2.0/choicedata/build/partial.rdb |binary choicedata-0.2.0/choicedata/data/lichess_berserk_choice.rda |only choicedata-0.2.0/choicedata/data/water_conservation_choice.rda |only choicedata-0.2.0/choicedata/data/wind_power_choice.rda |only choicedata-0.2.0/choicedata/inst/REFERENCES.bib | 93 choicedata-0.2.0/choicedata/man/choice_alternatives.Rd | 155 choicedata-0.2.0/choicedata/man/choice_covariates.Rd | 325 choicedata-0.2.0/choicedata/man/choice_data.Rd | 368 choicedata-0.2.0/choicedata/man/choice_effects.Rd | 178 choicedata-0.2.0/choicedata/man/choice_formula.Rd | 239 choicedata-0.2.0/choicedata/man/choice_identifiers.Rd | 201 choicedata-0.2.0/choicedata/man/choice_likelihood.Rd | 258 choicedata-0.2.0/choicedata/man/choice_parameters.Rd | 347 choicedata-0.2.0/choicedata/man/choice_preferences.Rd | 146 choicedata-0.2.0/choicedata/man/choice_probabilities.Rd | 542 + choicedata-0.2.0/choicedata/man/choice_responses.Rd | 175 choicedata-0.2.0/choicedata/man/choicedata-package.Rd | 57 choicedata-0.2.0/choicedata/man/compute_P.Rd | 49 choicedata-0.2.0/choicedata/man/decider_identifiers_to_cross_section.Rd | 48 choicedata-0.2.0/choicedata/man/expand_Tp.Rd | 52 choicedata-0.2.0/choicedata/man/figures/logo.png |binary choicedata-0.2.0/choicedata/man/get_decider_identifiers.Rd | 40 choicedata-0.2.0/choicedata/man/get_position_from_identifier.Rd | 74 choicedata-0.2.0/choicedata/man/lichess_berserk_choice.Rd |only choicedata-0.2.0/choicedata/man/read_Tp.Rd | 43 choicedata-0.2.0/choicedata/man/train_test.Rd |only choicedata-0.2.0/choicedata/man/water_conservation_choice.Rd |only choicedata-0.2.0/choicedata/man/wind_power_choice.Rd |only choicedata-0.2.0/choicedata/src |only choicedata-0.2.0/choicedata/tests/testthat.R | 24 choicedata-0.2.0/choicedata/tests/testthat/test-choice_alternatives.R | 137 choicedata-0.2.0/choicedata/tests/testthat/test-choice_covariates.R | 428 - choicedata-0.2.0/choicedata/tests/testthat/test-choice_data.R | 1432 +-- choicedata-0.2.0/choicedata/tests/testthat/test-choice_effects.R | 399 choicedata-0.2.0/choicedata/tests/testthat/test-choice_formula.R | 664 - choicedata-0.2.0/choicedata/tests/testthat/test-choice_identifiers.R | 542 - choicedata-0.2.0/choicedata/tests/testthat/test-choice_likelihood.R | 556 - choicedata-0.2.0/choicedata/tests/testthat/test-choice_parameters.R | 644 + choicedata-0.2.0/choicedata/tests/testthat/test-choice_preferences.R | 157 choicedata-0.2.0/choicedata/tests/testthat/test-choice_probabilities.R | 3635 ++++---- choicedata-0.2.0/choicedata/tests/testthat/test-choice_responses.R | 402 68 files changed, 16253 insertions(+), 12386 deletions(-)
Title: Augments 'ASReml-R' in Fitting Mixed Models and Packages
Generally in Exploring Prediction Differences
Description: Assists in automating the selection of terms to include in mixed models when
'asreml' is used to fit the models. Procedures are available for choosing models that
conform to the hierarchy or marginality principle, for fitting and choosing between
two-dimensional spatial models using correlation, natural cubic smoothing spline and
P-spline models. A history of the fitting of a sequence of models is kept in a data frame.
Also used to compute functions and contrasts of, to investigate differences between and
to plot predictions obtained using any model fitting function. The content falls into
the following natural groupings: (i) Data, (ii) Model modification functions, (iii) Model
selection and description functions, (iv) Model diagnostics and simulation functions,
(v) Prediction production and presentation functions, (vi) Response transformation
functions, (vii) Object manipulation functions, and (viii) Miscellaneous functions
(for further details see 'asremlPlus-package' in help). The [...truncated...]
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between asremlPlus versions 4.4.63 dated 2026-07-10 and 4.4.65 dated 2026-09-15
asremlPlus-4.4.63/asremlPlus/R/estimateV.v3.R |only asremlPlus-4.4.63/asremlPlus/tests/testthat/testthat-problems.rds |only asremlPlus-4.4.65/asremlPlus/DESCRIPTION | 8 asremlPlus-4.4.65/asremlPlus/MD5 | 81 ++++++-- asremlPlus-4.4.65/asremlPlus/R/alldiffs.v6.r | 6 asremlPlus-4.4.65/asremlPlus/R/estimateV.v4.R |only asremlPlus-4.4.65/asremlPlus/build/partial.rdb |binary asremlPlus-4.4.65/asremlPlus/inst/NEWS.Rd | 28 +- asremlPlus-4.4.65/asremlPlus/inst/doc/LadybirdEMMs.asreml.pdf |binary asremlPlus-4.4.65/asremlPlus/inst/doc/LadybirdEMMs.lm.pdf |binary asremlPlus-4.4.65/asremlPlus/inst/doc/Wheat.analysis.pdf |binary asremlPlus-4.4.65/asremlPlus/inst/doc/Wheat.infoCriteria.pdf |binary asremlPlus-4.4.65/asremlPlus/inst/doc/WheatSpatialModels.pdf |binary asremlPlus-4.4.65/asremlPlus/inst/doc/asremlPlus-manual.pdf |binary asremlPlus-4.4.65/asremlPlus/tests/testthat/_problems |only asremlPlus-4.4.65/asremlPlus/tests/testthat/test42MET.r | 100 ++++++++++ asremlPlus-4.4.65/asremlPlus/tests/testthat/test42WheatSpatialVignette.r | 2 asremlPlus-4.4.65/asremlPlus/tests/testthat/test42alldiffsasr.r | 50 ++--- asremlPlus-4.4.65/asremlPlus/tests/testthat/test42alldiffslme.r | 2 asremlPlus-4.4.65/asremlPlus/vignettes/WheatSpatialModels.Rmd |only 20 files changed, 218 insertions(+), 59 deletions(-)
Title: R Tools for Text Matrices, Embeddings, and Networks
Description: This is a collection of functions optimized for working with
various kinds of text matrices. Focusing on
the text matrix as the primary object - represented
either as a base R dense matrix or a 'Matrix' package sparse
matrix - allows for a consistent and intuitive interface
that stays close to the underlying mathematical foundation
of computational text analysis. In particular, the package
includes functions for working with word embeddings,
text networks, and document-term matrices. Methods developed in
Stoltz and Taylor (2019) <doi:10.1007/s42001-019-00048-6>,
Taylor and Stoltz (2020) <doi:10.1007/s42001-020-00075-8>,
Taylor and Stoltz (2020) <doi:10.15195/v7.a23>, and
Stoltz and Taylor (2021) <doi:10.1016/j.poetic.2021.101567>.
Author: Dustin Stoltz [aut, cre] ,
Marshall Taylor [aut]
Maintainer: Dustin Stoltz <dss219@lehigh.edu>
Diff between text2map versions 0.2.3 dated 2026-02-11 and 0.4.0 dated 2026-09-15
DESCRIPTION | 47 +- MD5 | 138 ++++---- NAMESPACE | 40 +- NEWS.md | 69 ++++ R/CMDist.R | 299 ++++++++++++++---- R/CoCA.R | 222 +++++++++---- R/data.R | 43 ++ R/utils-dtm.R | 384 ++++++++++++------------ R/utils-embedding-matrices.R | 181 ++++++++++- R/utils-embedding-relco.R | 190 +++++++---- R/utils-embedding-vectors.R | 232 +++++++++++--- R/utils-methods.R | 12 R/utils-perm.R | 142 ++++++-- R/utils-textnets.R | 60 ++- R/utils.R | 122 ++++--- R/zzz.R | 200 ------------ README.md | 8 build/partial.rdb |binary inst/WORDLIST | 201 ++++++++---- man/CMDist.Rd | 18 - man/CoCA.Rd | 2 man/anchor_lists.Rd | 11 man/doc_centrality.Rd | 13 man/doc_similarity.Rd | 11 man/dtm_builder.Rd | 2 man/dtm_melter.Rd | 12 man/dtm_resampler.Rd | 11 man/dtm_stats.Rd | 12 man/find_projection.Rd | 9 man/find_rejection.Rd | 9 man/find_transformation.Rd | 19 + man/ft_wv_sample.Rd | 6 man/get_anchors.Rd | 13 man/get_centroid.Rd | 3 man/get_centroids.Rd |only man/get_direction.Rd | 32 +- man/get_regions.Rd | 2 man/get_stoplist.Rd | 12 man/jfk_speech.Rd | 7 man/meta_shakespeare.Rd | 9 man/perm_tester.Rd | 22 - man/plot.CMDist.Rd |only man/plot.CoCA.Rd | 42 ++ man/print.CMDist.Rd |only man/print.CoCA.Rd | 24 + man/rancor_builder.Rd | 15 man/rancors_builder.Rd | 19 + man/seq_builder.Rd | 11 man/stoplists.Rd | 17 - man/test_anchors.Rd | 8 man/text2map-package.Rd | 3 man/tiny_gender_tagger.Rd | 7 man/vocab_builder.Rd | 10 man/weight_ppmi.Rd |only tests/testthat.R | 13 tests/testthat/helper-data.R | 25 - tests/testthat/setup-data.R |only tests/testthat/test-CMDist-a-prep.R | 28 + tests/testthat/test-CMDist-b-cmdist.R | 104 ++++++ tests/testthat/test-CMDist-e-sensitivity.R | 2 tests/testthat/test-CoCA.R |only tests/testthat/test-input-validation.R |only tests/testthat/test-internal-helpers.R |only tests/testthat/test-relco.R |only tests/testthat/test-utils-dtm.R | 400 ++++++++++++++++++------- tests/testthat/test-utils-embedding-vectors.R | 233 ++++++++++++++ tests/testthat/test-utils-embeddings.R | 239 ++++++++++++++ tests/testthat/test-utils-perm.R | 314 +++++++++++++++++++ tests/testthat/test-utils-stopper.R | 23 + tests/testthat/test-utils-textnets.R | 114 ++++++- tests/testthat/test-utils.R | 26 + tests/testthat/test-vocab-builder.R |only tests/testthat/test-x-nocran-dtm-pkgs.R | 14 tests/testthat/test-y-nocran-CoCA.R | 21 - tests/testthat/test-z-nocran-CMDist-parallel.R | 69 +++- 75 files changed, 3394 insertions(+), 1212 deletions(-)
Title: Log-Likelihood Functions for 'rxode2'
Description: Provides the log-likelihoods with gradients from 'stan'
(Carpenter et al (2015), <doi:10.48550/arXiv.1509.07164>) needed
for generalized log-likelihood estimation in 'nlmixr2'
(Fidler et al (2019) <doi:10.1002/psp4.12445>). This is
split of to reduce computational burden of recompiling 'rxode2'
(Wang, Hallow and James (2016) <doi:10.1002/psp4.12052>) which runs
the 'nlmixr2' models during estimation.
Author: Matthew L. Fidler [aut, cre]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2ll versions 2.0.17 dated 2026-09-09 and 2.0.18 dated 2026-09-15
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NAMESPACE | 1 - NEWS.md | 8 ++++++++ R/llik.R | 1 - inst/tools/workaround.R | 24 ++++++++++++++---------- src/Makevars.in | 11 +++++++++-- tests/testthat/test-no-tbb.R |only 8 files changed, 42 insertions(+), 24 deletions(-)
Title: Simultaneous Q-Mode and R-Mode Factor Analysis for Spatial Data
Description: Performs Q-mode and R-mode factor analysis simultaneously on
spatial and non-spatial data. A single function, qrfactor(), carries out
principal component analysis, R-mode factor analysis, Q-mode factor
analysis, simultaneous R- and Q-mode factor analysis, principal
coordinate analysis and multidimensional scaling. Loadings and scores are
returned from the fitted object, and the plot() method provides annotated
biplots for combinations of eigenvectors, loadings and scores. Input may
be supplied as an 'ESRI' shapefile, a delimited text file or a data frame.
Author: George Owusu [aut, cre]
Maintainer: George Owusu <owusugeorge@ug.edu.gh>
This is a re-admission after prior archival of version 1.4 dated 2014-01-02
Diff between qrfactor versions 1.4 dated 2014-01-02 and 1.6 dated 2026-09-15
qrfactor-1.4/qrfactor/inst/external/qrfactor12regionsadmin.R |only qrfactor-1.4/qrfactor/inst/external/qrfactor14.R |only qrfactor-1.4/qrfactor/inst/external/qrfactor14_2_.R |only qrfactor-1.4/qrfactor/inst/external/qrfactor14admin.R |only qrfactor-1.6/qrfactor/DESCRIPTION | 36 qrfactor-1.6/qrfactor/MD5 | 15 qrfactor-1.6/qrfactor/NAMESPACE | 34 qrfactor-1.6/qrfactor/NEWS.md |only qrfactor-1.6/qrfactor/R/compat.R |only qrfactor-1.6/qrfactor/R/qrfactor14b.R | 470 ++++++----- qrfactor-1.6/qrfactor/man/qrfactor.Rd | 78 + qrfactor-1.6/qrfactor/tests/rotation.R |only 12 files changed, 393 insertions(+), 240 deletions(-)
Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics)
curves. Saito and Rehmsmeier (2015) <doi:10.1371/journal.pone.0118432>.
Author: Takaya Saito [aut, cre] ,
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.14.5 dated 2025-05-15 and 0.24.0 dated 2026-09-15
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Title: Welfare's Synthetic Indicator
Description: The welfare's synthetic indicator provides an ideal tool for measuring multi-dimensional concepts such as welfare, development, living standards, etc. It enables information from the various indicators to be aggregated into a single synthetic measure. The method was proposed by Pena (1977, ISBN:9788426001788) and further developed by Zarzosa and Somarriba (2012) <doi:10.1007/s11205-012-0005-0>.
Author: Antonio J. Perez-Luque [aut, cre] ,
Ricardo Moreno [ctb],
Ramon Perez-Perez [aut],
Francisco J. Bonet-Garcia [ctb]
Maintainer: Antonio J. Perez-Luque <ajpelu@gmail.com>
This is a re-admission after prior archival of version 1.0.1 dated 2012-05-10
Diff between p2distance versions 1.0.1 dated 2012-05-10 and 1.0.2 dated 2026-09-15
DESCRIPTION | 46 +++-- MD5 | 29 ++- NAMESPACE | 11 + NEWS.md |only R/data.R |only R/loadCSVtoP2distance.R | 61 +++++- R/makeReferenceVector.R | 60 +++++- R/p2distance-package.R |only R/p2distance.R | 402 ++++++++++++++++++++++++++++----------------- README.md |only build |only inst |only man/figures |only man/loadCSVtoP2distance.Rd | 70 +++++-- man/makeReferenceVector.Rd | 64 ++++--- man/p2distance-package.Rd | 76 +++++--- man/p2distance.Rd | 180 ++++++++++++-------- man/welfare.Rd | 135 ++++++++++----- 18 files changed, 762 insertions(+), 372 deletions(-)
Title: Actuarial Functions for Non-Life Insurance Modelling
Description: Assists actuaries and other insurance modellers in pricing,
reserving and capital modelling for non-life insurance and
reinsurance modelling. Provides functions that help model
excess levels, capping and pure Incurred but not reported
claims (pure IBNR).
Includes capped mean, exposure curves and increased limit
factor curves (ILFs) for LogNormal, Gamma, Pareto, Sliced
LogNormal-Pareto and Sliced Gamma-Pareto distributions.
Includes mean, probability density function (pdf), cumulative
probability function (cdf) and inverse cumulative probability
function for Sliced LogNormal-Pareto and Sliced Gamma-Pareto
distributions.
Includes calculating pure IBNR exposure with LogNormal and
Gamma distribution for reporting delay.
Includes three 'shiny' tools, one to simulate insurance claims applying
reinsurance structures, fit generalised linear models and fit claims
frequency or severity distributions.
Methods used in the package refer to
Free for All by Yiannis Parizas (2023) <https://www.thea [...truncated...]
Author: Yiannis Parizas [aut, cre]
Maintainer: Yiannis Parizas <yiannis.parizas@gmail.com>
Diff between NetSimR versions 0.2.0 dated 2026-09-13 and 0.3.0 dated 2026-09-15
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NetSimR-0.3.0/NetSimR/inst/doc/SimulateClaims.R |only NetSimR-0.3.0/NetSimR/inst/doc/SimulateClaims.Rmd |only NetSimR-0.3.0/NetSimR/inst/doc/SimulateClaims.html |only NetSimR-0.3.0/NetSimR/inst/doc/SlicedDistributions.Rmd | 24 NetSimR-0.3.0/NetSimR/inst/doc/SlicedDistributions.html | 48 NetSimR-0.3.0/NetSimR/man/ExposureCurveGamma.Rd | 10 NetSimR-0.3.0/NetSimR/man/ExposureCurveLNorm.Rd | 10 NetSimR-0.3.0/NetSimR/man/ExposureCurvePareto.Rd | 10 NetSimR-0.3.0/NetSimR/man/ExposureCurveSlicedGammaPareto.Rd | 14 NetSimR-0.3.0/NetSimR/man/ExposureCurveSlicedLNormPareto.Rd | 14 NetSimR-0.3.0/NetSimR/man/GLMFittingToolServer.Rd | 1 NetSimR-0.3.0/NetSimR/man/GLMFittingToolUI.Rd | 1 NetSimR-0.3.0/NetSimR/man/GammaCappedMean.Rd | 13 NetSimR-0.3.0/NetSimR/man/IGamma.Rd | 7 NetSimR-0.3.0/NetSimR/man/ILFGamma.Rd | 12 NetSimR-0.3.0/NetSimR/man/ILFLNorm.Rd | 12 NetSimR-0.3.0/NetSimR/man/ILFPareto.Rd | 12 NetSimR-0.3.0/NetSimR/man/ILFSlicedGammaPareto.Rd | 14 NetSimR-0.3.0/NetSimR/man/ILFSlicedLNormPareto.Rd | 14 NetSimR-0.3.0/NetSimR/man/LNormCappedMean.Rd | 13 NetSimR-0.3.0/NetSimR/man/NetSimR-package.Rd | 8 NetSimR-0.3.0/NetSimR/man/ParetoCappedMean.Rd | 13 NetSimR-0.3.0/NetSimR/man/ParetoCappedMeanCalc.Rd | 13 NetSimR-0.3.0/NetSimR/man/PureIBNRGamma.Rd | 19 NetSimR-0.3.0/NetSimR/man/PureIBNRLNorm.Rd | 19 NetSimR-0.3.0/NetSimR/man/SlicedGammaParetoCappedMean.Rd | 15 NetSimR-0.3.0/NetSimR/man/SlicedGammaParetoMean.Rd | 15 NetSimR-0.3.0/NetSimR/man/SlicedLNormParetoCappedMean.Rd | 15 NetSimR-0.3.0/NetSimR/man/SlicedLNormParetoMean.Rd | 15 NetSimR-0.3.0/NetSimR/man/apply_deductible_limit.Rd | 13 NetSimR-0.3.0/NetSimR/man/dSlicedGammaPareto.Rd | 17 NetSimR-0.3.0/NetSimR/man/dSlicedLNormPareto.Rd | 17 NetSimR-0.3.0/NetSimR/man/distributionClass-class.Rd | 1 NetSimR-0.3.0/NetSimR/man/distribution_fitting_tool_Server.Rd | 1 NetSimR-0.3.0/NetSimR/man/distribution_fitting_tool_UI.Rd | 1 NetSimR-0.3.0/NetSimR/man/erf.Rd | 5 NetSimR-0.3.0/NetSimR/man/freq_dist_options.Rd | 1 NetSimR-0.3.0/NetSimR/man/freq_dist_parameter_placeholders.Rd | 1 NetSimR-0.3.0/NetSimR/man/max_number_of_pareto_slices.Rd | 5 NetSimR-0.3.0/NetSimR/man/pSlicedGammaPareto.Rd | 17 NetSimR-0.3.0/NetSimR/man/pSlicedLNormPareto.Rd | 17 NetSimR-0.3.0/NetSimR/man/qSlicedGammaPareto.Rd | 17 NetSimR-0.3.0/NetSimR/man/qSlicedLNormPareto.Rd | 17 NetSimR-0.3.0/NetSimR/man/reinsurance_structures_options.Rd | 1 NetSimR-0.3.0/NetSimR/man/run_shiny_simulator.Rd | 8 NetSimR-0.3.0/NetSimR/man/sev_dist_options.Rd | 1 NetSimR-0.3.0/NetSimR/man/sev_dist_parameter_placeholders.Rd | 1 NetSimR-0.3.0/NetSimR/man/shiny_simulator_server.Rd | 1 NetSimR-0.3.0/NetSimR/man/shiny_simulator_ui.Rd | 1 NetSimR-0.3.0/NetSimR/man/simulate_claims.Rd | 14 NetSimR-0.3.0/NetSimR/man/simulate_function.Rd | 53 NetSimR-0.3.0/NetSimR/tests/testthat/test-apply-deductible-limit.R | 24 NetSimR-0.3.0/NetSimR/tests/testthat/test-capped-mean.R | 4 NetSimR-0.3.0/NetSimR/tests/testthat/test-core-validation.R |only NetSimR-0.3.0/NetSimR/tests/testthat/test-fit-charts.R |only NetSimR-0.3.0/NetSimR/tests/testthat/test-fit-count-mle.R |only NetSimR-0.3.0/NetSimR/tests/testthat/test-fit-unusual-data.R |only NetSimR-0.3.0/NetSimR/tests/testthat/test-pkg-capped-means.R | 18 NetSimR-0.3.0/NetSimR/tests/testthat/test-pkg-fitting-helpers.R | 71 - NetSimR-0.3.0/NetSimR/tests/testthat/test-pkg-fitting-tools.R | 51 NetSimR-0.3.0/NetSimR/tests/testthat/test-pkg-pure-ibnr.R | 84 + NetSimR-0.3.0/NetSimR/tests/testthat/test-pkg-sliced-distributions.R | 34 NetSimR-0.3.0/NetSimR/tests/testthat/test-report.R | 45 NetSimR-0.3.0/NetSimR/tests/testthat/test-sim-aggregate-order.R |only NetSimR-0.3.0/NetSimR/tests/testthat/test-sim-precision.R |only NetSimR-0.3.0/NetSimR/tests/testthat/test-simulate-engine.R | 581 +++++--- NetSimR-0.3.0/NetSimR/tests/testthat/test-simulate-function.R | 24 NetSimR-0.3.0/NetSimR/tests/testthat/test-simulator-server.R | 82 + NetSimR-0.3.0/NetSimR/tests/testthat/test-summarise-simulation.R | 36 NetSimR-0.3.0/NetSimR/tests/testthat/test-validation.R | 44 NetSimR-0.3.0/NetSimR/vignettes/CappedMean.Rmd | 18 NetSimR-0.3.0/NetSimR/vignettes/PureIBNR.Rmd | 36 NetSimR-0.3.0/NetSimR/vignettes/SimulateClaims.Rmd |only NetSimR-0.3.0/NetSimR/vignettes/SlicedDistributions.Rmd | 24 105 files changed, 3975 insertions(+), 1789 deletions(-)
Title: Fast Functional Generalized Estimating Equations via a One-Step
Estimator
Description: Fits functional generalized estimating equations for longitudinal
functional outcomes and covariates using a one-step estimator that is fast
even for large cluster sizes or large numbers of clusters. The package
supports quasi-likelihoods derived from a range of distributions, with
substantial simulations run for quasi-likelihoods derived from Gaussian,
binomial, Poisson, negative binomial, Gamma and beta families. It supports
common link functions and several working correlation structures. An optimized engine
constructs cluster score and sensitivity statistics in one pass, provides
coefficient-space Gaussian cross-validation, analytic-gradient fast cluster
cross-validation, and an experimental sandwich-scaled working restricted
quasi-likelihood selector. Internal compiled routines provide symmetric
positive-definite Cholesky solves and exact tridiagonal precision operations
for irregularly sampled continuous-time AR(1) working correlations.
Uncertainty quantification is based on sand [...truncated...]
Author: Gabriel Loewinger [aut, cre]
Maintainer: Gabriel Loewinger <gloewinger@gmail.com>
Diff between fastFGEE versions 0.1.0 dated 2026-04-08 and 0.2.0 dated 2026-09-15
DESCRIPTION | 40 +- MD5 | 101 ++++-- NAMESPACE | 6 R/RcppExports.R |only R/WD_estimate.R | 20 - R/compact_inference.R |only R/corr.estimate.R | 33 +- R/corr_kernel.R |only R/cv.R | 9 R/edf.R | 20 - R/family_fns.R | 40 ++ R/fastFGEE-package.R | 52 ++- R/fastk_kernel.R |only R/fgee.R | 267 +++++++++++++++- R/fgee.plot.R | 6 R/fgee_engine_optimized.R |only R/fgee_public.R |only R/globals.R | 4 R/irregular_ar1_internal.R |only R/jointCI.R | 6 R/linear_algebra_internal.R |only R/model_update.R | 64 ++-- R/nuisance_integration_core.R |only R/nuisance_parameters.R |only R/penalty.R | 57 +++ R/solve_pd.R | 72 +++- R/tuning_dispatch.R |only R/tuning_fastk.R |only R/tuning_fastk_fast.R |only R/tuning_qreml.R |only R/working_stats.R |only build/vignette.rds |binary inst/doc/fastFGEE.R | 151 ++------- inst/doc/fastFGEE.Rmd | 542 +++++++++++++++++++++------------- inst/doc/fastFGEE.html | 660 +++++++++++++++++++++++++----------------- inst/validation |only man/fastFGEE-package.Rd | 31 - man/fgee.Rd | 160 ++++------ man/fgee.plot.Rd | 6 src |only tests |only vignettes/fastFGEE.Rmd | 542 +++++++++++++++++++++------------- 42 files changed, 1854 insertions(+), 1035 deletions(-)
Title: Circular Data Analysis
Description: Functions to perform maximum likelihood estimation, model-based clustering, discriminant and regression analysis with a circular response variable. The standard textbook for such data is the "Directional Statistics" by Mardia, K. V. and Jupp, P. E. (2000). Other references include: Tsagris M. and Alzeley O. (2025). "Circular and spherical projected Cauchy distributions: A Novel Framework for Circular and Directional Data Modeling". Australian & New Zealand Journal of Statistics, 67(1): 77--103. <doi:10.1111/anzs.12434>. Tsagris M., Papastamoulis P. and Kato S. (2025). "Directional data analysis: spherical Cauchy or Poisson kernel-based distribution". Statistics and Computing, 35:51 <doi:10.1007/s11222-025-10583-0>. Alzeley O. and Tsagris (2026). "On the generalized circular projected Cauchy distribution". Mathematics, 14(11): 1934 <doi:10.3390/math14111934>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between circda versions 1.0 dated 2026-07-29 and 1.1 dated 2026-09-15
DESCRIPTION | 12 +++---- MD5 | 38 +++++++++++++---------- NAMESPACE | 3 + R/circ.gomp.R |only R/circ.reg.R | 80 +++++++++++++++++++++++++++++++++++++++++++++++--- R/circ.ridge.R |only R/circridge.cv.R |only man/bic.mixcirc.Rd | 2 - man/circ.da.Rd | 2 - man/circ.gomp.Rd |only man/circ.mle.Rd | 2 - man/circ.reg.Rd | 23 ++++++++++---- man/circ.regs.Rd | 2 - man/circ.ridge.Rd |only man/circda-package.Rd | 11 ++++-- man/circda.cv.Rd | 2 - man/circridge.cv.Rd |only man/colcirc.mle.Rd | 2 - man/dcirc.Rd | 2 - man/dmixcirc.Rd | 2 - man/mixcirc.mle.Rd | 3 + man/rcirc.Rd | 2 - man/rmixcirc.Rd | 2 - 23 files changed, 143 insertions(+), 47 deletions(-)
Title: Subset Partitioning via Anticlustering
Description: The method of anticlustering partitions a pool of elements into groups (i.e., anticlusters) with the goal of maximizing between-group similarity or within-group heterogeneity. The anticlustering approach thereby reverses the logic of cluster analysis that strives for high within-group homogeneity and clear separation between groups. Computationally, anticlustering is accomplished by maximizing instead of minimizing a clustering objective function, such as the intra-cluster variance (used in k-means clustering) or the sum of pairwise distances within clusters. The main function anticlustering() gives access to optimal and heuristic anticlustering methods described in Papenberg and Klau (2021; <doi:10.1037/met0000301>), Brusco et al. (2020; <doi:10.1111/bmsp.12186>), Papenberg (2024; <doi:10.1111/bmsp.12315>), Papenberg, Wang, et al. (2025; <doi:10.1016/j.crmeth.2025.101137>), Papenberg, Breuer, et al. (2025; <doi:10.1017/psy.2025.10052>), Yang et al. (202 [...truncated...]
Author: Martin Papenberg [aut, cre] ,
Meik Michalke [ctb] ,
Gunnar W. Klau [ths],
Juliane V. Nagel [ctb] ,
Martin Breuer [ctb] ,
Marie L. Schaper [ctb] ,
Max Diekhoff [ctb] ,
Hannah Hengelbrock [ctb] ,
Dimitry Wintermantel [ctb] ),
David Buczynski [ctb]
Maintainer: Martin Papenberg <martin.papenberg@hhu.de>
Diff between anticlust versions 0.8.16 dated 2026-09-09 and 0.8.18 dated 2026-09-15
DESCRIPTION | 6 - MD5 | 18 +-- R/wrapper-feasible-and-infeasible-region-search.R | 4 R/wrapper-k-plus-anticlustering.R | 2 inst/doc/Speeding_up_anticlustering.html | 22 ++-- inst/tinytest/test-cannot-link.R | 50 ++++++---- inst/tinytest/test-fifr.R | 33 ++++-- inst/tinytest/test-solving-ilp.R | 25 ++++- inst/tinytest/test-three-phase-search-dynamic-population-size.R | 27 ++++- man/kplus_anticlustering.Rd | 2 10 files changed, 129 insertions(+), 60 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
This is a re-admission after prior archival of version 0.24.0-1 dated 2026-07-29
Diff between adbcsqlite versions 0.24.0-1 dated 2026-07-29 and 0.24.0-2 dated 2026-09-15
DESCRIPTION | 6 - MD5 | 8 +- src/c/driver_manager/adbc_driver_manager.cc | 3 src/c/driver_manager/adbc_driver_manager_internal.h | 6 + src/c/driver_manager/adbc_driver_manager_profiles.cc | 58 ++++++++++++------- 5 files changed, 49 insertions(+), 32 deletions(-)
Title: Improves the Interpretation of the Standardized Precipitation
Index Under Changing Climate Conditions
Description: Improves the interpretation of the Standardized Precipitation
Index under changing climate conditions. The package uses the
nonstationary approach proposed in Blain et al. (2022)
<doi:10.1002/joc.7550> to detect trends in rainfall quantities and to
quantify the effect of such trends on the probability of a drought event
occurring.
Author: Gabriel Constantino Blain [aut, cre] ,
Graciela R. Sobierajski [aut] ,
Leticia L. Martins [aut] ,
Adam H. Sparks [aut]
Maintainer: Gabriel Constantino Blain <gabriel.blain@sp.gov.br>
Diff between SPIChanges versions 0.2.1 dated 2025-10-23 and 0.3.0 dated 2026-09-15
DESCRIPTION | 11 MD5 | 32 NAMESPACE | 41 NEWS.md | 8 R/SPIChanges.R | 1096 +++++++----- R/globals.R | 4 README.md | 958 +++++----- build/vignette.rds |binary inst/doc/CaseStudies.R | 1355 ++++++--------- inst/doc/CaseStudies.Rmd | 332 --- inst/doc/CaseStudies.html | 3508 +++++++++++++++++---------------------- inst/doc/SPIChanges.R | 94 - inst/doc/SPIChanges.html | 1686 +++++++++--------- man/SPIChanges.Rd | 148 - tests/testthat/test-SPIChanges.R | 382 ++-- vignettes/CaseStudies.Rmd | 332 --- vignettes/bibliography.bib | 579 +++--- 17 files changed, 4713 insertions(+), 5853 deletions(-)
More information about SelectionTools at CRAN
Permanent link
Title: Translate Text
Description: Provide easy methods to translate pieces of text.
Functions send requests to translation services online.
Author: Tomer Iwan [aut, cre, cph]
Maintainer: Tomer Iwan <iwantomer@hotmail.com>
Diff between polyglotr versions 1.7.4 dated 2026-06-08 and 1.7.5 dated 2026-09-15
polyglotr-1.7.4/polyglotr/man/figures/hex-polyglotr.png |only polyglotr-1.7.5/polyglotr/DESCRIPTION | 8 polyglotr-1.7.5/polyglotr/MD5 | 23 +- polyglotr-1.7.5/polyglotr/NEWS.md | 7 polyglotr-1.7.5/polyglotr/R/google_translate.R | 87 ++++++++-- polyglotr-1.7.5/polyglotr/R/google_translate_long_text.R | 32 +-- polyglotr-1.7.5/polyglotr/R/language_detect.R | 31 +-- polyglotr-1.7.5/polyglotr/README.md | 22 +- polyglotr-1.7.5/polyglotr/man/figures/hex-polyglotr.svg |only polyglotr-1.7.5/polyglotr/man/figures/polyglotr-logo-inner.svg |only polyglotr-1.7.5/polyglotr/man/google_translate.Rd | 7 polyglotr-1.7.5/polyglotr/man/language_detect.Rd | 2 polyglotr-1.7.5/polyglotr/tests/testthat/helpers.R | 27 ++- polyglotr-1.7.5/polyglotr/tests/testthat/test-google_translate.R | 70 +++++++- 14 files changed, 226 insertions(+), 90 deletions(-)
Title: Easily Install and Load the 'mlr3' Package Family
Description: The 'mlr3' package family is a set of packages for
machine-learning purposes built in a modular fashion. This wrapper
package is aimed to simplify the installation and loading of the core
'mlr3' packages. Get more information about the 'mlr3' project at
<https://mlr3book.mlr-org.com/>.
Author: Michel Lang [aut] ,
Patrick Schratz [aut] ,
Marc Becker [cre, aut] ,
John Zobolas [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3verse versions 0.3.2 dated 2026-06-22 and 0.4.0 dated 2026-09-15
DESCRIPTION | 26 +++++++----- MD5 | 13 +++--- NAMESPACE | 38 +++++++++++++++++- NEWS.md | 6 ++ R/reexports_mlr3pipelines.R | 4 - R/reexports_mlr3torch.R |only README.md | 89 ++++++++++++++++++++++---------------------- man/reexports.Rd | 24 ++++++++++- 8 files changed, 133 insertions(+), 67 deletions(-)
Title: Univariate Kernel Density Estimation
Description: Provides an efficient implementation of univariate local polynomial
kernel density estimators that can handle bounded, discrete, and zero-inflated
data. See Geenens and Wang (2018) <doi:10.48550/arXiv.1602.04862>,
Geenens (2014) <doi:10.48550/arXiv.1303.4121>,
Nagler (2018a) <doi:10.48550/arXiv.1704.07457>,
Nagler (2018b) <doi:10.48550/arXiv.1705.05431>.
Author: Thomas Nagler [aut, cre],
Thibault Vatter [aut]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between kde1d versions 1.2.0 dated 2026-09-10 and 1.2.2 dated 2026-09-15
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 15 +++++++++++++++ inst/include/kde1d-cpp/include/kde1d/tools.hpp | 14 ++++++++++++++ tests/testthat/Rplots.pdf |binary 5 files changed, 36 insertions(+), 7 deletions(-)
Title: Iterated Racing for Automatic Algorithm Configuration
Description: Iterated race is an extension of the Iterated F-race method for
the automatic configuration of optimization algorithms, that is,
(offline) tuning their parameters by finding the most appropriate
settings given a set of instances of an optimization problem.
M. López-Ibáñez, J. Dubois-Lacoste, L. Pérez Cáceres, T. Stützle,
and M. Birattari (2016) <doi:10.1016/j.orp.2016.09.002>.
Author: Manuel Lopez-Ibanez [aut, cre] ,
Jeremie Dubois-Lacoste [aut],
Leslie Perez Caceres [aut],
Thomas Stuetzle [aut],
Mauro Birattari [aut],
Eric Yuan [ctb],
Prasanna Balaprakash [ctb],
Nguyen Dang [ctb]
Maintainer: Manuel Lopez-Ibanez <manuel.lopez-ibanez@manchester.ac.uk>
Diff between irace versions 4.4.4 dated 2026-09-09 and 4.5 dated 2026-09-15
DESCRIPTION | 6 MD5 | 139 +++++------ NEWS.md | 24 + R/argparser.R | 2 R/generation.R | 6 R/irace-options.R | 56 ++-- R/irace.R | 21 + R/irace_summarise.R | 10 R/model.R | 14 - R/race.R | 2 R/random_seed.R | 8 R/readConfiguration.R | 3 R/scenario.R | 8 R/testing.R | 10 R/timer.R | 5 R/tnorm.R | 10 R/version.R | 2 R/zzz.R | 2 build/partial.rdb |binary inst/bin/parallel-irace | 4 inst/bin/parallel-irace-mpi | 10 inst/bin/parallel-irace-qsub | 2 inst/bin/parallel-irace-slurm | 2 inst/doc/irace-package.R | 19 + inst/doc/irace-package.Rnw | 55 ++++ inst/doc/irace-package.pdf |binary inst/examples/Spear/README | 5 inst/examples/Spear/parameters-cat.txt | 13 - inst/examples/Spear/parameters-mixed.txt | 13 - inst/examples/Spear/scenario.txt | 1 inst/examples/batchmode-cluster/irace-sge-cluster | 2 inst/examples/batchmode-cluster/target-evaluator | 6 inst/examples/moaco/README | 5 inst/examples/moaco/parameters.txt | 6 inst/examples/moaco/scenario.txt | 1 inst/examples/moaco/target-runner | 1 inst/examples/slurm/run_irace.R | 2 inst/examples/target-runner-c/target-runner.c | 2 inst/examples/target-runner-python/target-runner-acotsp.py | 2 inst/examples/target-runner-python/target-runner-advanced.py | 22 - inst/examples/target-runner-python/trivial/parameters.txt | 1 inst/examples/target-runner-python/trivial/target-runner.py | 11 inst/irace.sindef | 1 inst/templates/parameters.txt.tmpl | 8 inst/templates/scenario.txt.tmpl | 4 inst/templates/target-evaluator.tmpl | 4 man/defaultScenario.Rd | 1 src/Makevars | 2 src/Makevars.win | 1 src/dummy/target-runner-dummy.c | 10 src/iracebin/ablation.c | 1 src/iracebin/irace.c | 2 tests/testthat/dependencies.txt | 2 tests/testthat/dummy_wrapper.py | 14 - tests/testthat/setup.R | 1 tests/testthat/test-GenericWrapper4AC.R | 12 tests/testthat/test-bug-55.R | 3 tests/testthat/test-dependencies.R | 20 - tests/testthat/test-forbidden.R | 2 tests/testthat/test-iteration-callback.R |only tests/testthat/test-maxTime.R | 2 tests/testthat/test-psrace.R | 2 tests/testthat/test-readParameters.R | 2 tests/testthat/test-read_pcs_file.R | 5 tests/testthat/test-sann-irace.R | 8 tests/testthat/test-similar.R | 1 tests/testthat/test-sobol.R | 26 ++ tests/testthat/test-targeteval.R | 10 vignettes/irace-acotsp-testing.txt | 4 vignettes/irace-package.Rnw | 55 ++++ vignettes/section/irace-options.Rnw | 3 71 files changed, 453 insertions(+), 266 deletions(-)
Title: Easily Create and Style Tables for LaTeX, HTML and Other Formats
Description: Creates styled tables for data presentation. Export to HTML, LaTeX,
RTF, 'Word', 'Excel', 'PowerPoint', 'typst', SVG and PNG. Simple, modern
interface to manipulate borders, size, position, captions, colours,
text styles and number formatting. Table cells can span multiple rows and/or columns.
Includes a 'huxreg' function to create regression tables, and 'quick_*'
one-liners to print tables to a new document.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between huxtable versions 5.8.0 dated 2025-11-07 and 6.0.1 dated 2026-09-15
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huxtable-6.0.1/huxtable/man/row_height.Rd | 8 huxtable-6.0.1/huxtable/man/table_background_color.Rd |only huxtable-6.0.1/huxtable/man/table_notes.Rd |only huxtable-6.0.1/huxtable/man/text_color.Rd | 15 huxtable-6.0.1/huxtable/man/to_html.Rd | 28 huxtable-6.0.1/huxtable/man/to_latex.Rd | 21 huxtable-6.0.1/huxtable/man/to_md.Rd | 12 huxtable-6.0.1/huxtable/man/to_rtf.Rd | 12 huxtable-6.0.1/huxtable/man/to_screen.Rd | 12 huxtable-6.0.1/huxtable/man/to_typst.Rd | 12 huxtable-6.0.1/huxtable/man/width.Rd | 8 huxtable-6.0.1/huxtable/tests/testthat/_snaps/text |only huxtable-6.0.1/huxtable/tests/testthat/quarto-caption-precedence.qmd |only huxtable-6.0.1/huxtable/tests/testthat/table-tester-2.Rmd | 15 huxtable-6.0.1/huxtable/tests/testthat/test-as-html.R | 3 huxtable-6.0.1/huxtable/tests/testthat/test-captions.R |only huxtable-6.0.1/huxtable/tests/testthat/test-flextable.R | 49 + huxtable-6.0.1/huxtable/tests/testthat/test-html-builders.R | 41 + huxtable-6.0.1/huxtable/tests/testthat/test-huxreg.R | 6 huxtable-6.0.1/huxtable/tests/testthat/test-huxtable-creation.R | 7 huxtable-6.0.1/huxtable/tests/testthat/test-knit-print.R | 56 + huxtable-6.0.1/huxtable/tests/testthat/test-latex-dependencies.R | 11 huxtable-6.0.1/huxtable/tests/testthat/test-markdown.R | 4 huxtable-6.0.1/huxtable/tests/testthat/test-openxlsx.R | 34 huxtable-6.0.1/huxtable/tests/testthat/test-print.R | 146 +++ huxtable-6.0.1/huxtable/tests/testthat/test-quick-output.R | 20 huxtable-6.0.1/huxtable/tests/testthat/test-table-notes.R |only huxtable-6.0.1/huxtable/tests/testthat/test-typst.R | 32 huxtable-6.0.1/huxtable/tests/testthat/test-validate-outputs.R | 9 huxtable-6.0.1/huxtable/tests/testthat/test-yy-end-to-end.R | 157 +++- huxtable-6.0.1/huxtable/vignettes/huxreg.Rmd | 5 huxtable-6.0.1/huxtable/vignettes/huxtable.Rmd | 12 162 files changed, 2246 insertions(+), 872 deletions(-)
Title: Hasse Diagram of the Layout Structure and Restricted Layout
Structure
Description: Returns a Hasse diagram of the layout structure (Bate and Chatfield (2016)) <doi:10.1080/00224065.2016.11918173> or the restricted layout structure (Bate and Chatfield (2016)) <doi:10.1080/00224065.2016.11918174> of an experimental design.
Author: Damianos Michaelides [aut, cre],
Simon Bate [aut],
Marion Chatfield [aut]
Maintainer: Damianos Michaelides <dm3g15@soton.ac.uk>
Diff between hassediagrams versions 2.1 dated 2026-07-22 and 3.0 dated 2026-09-15
DESCRIPTION | 12 MD5 | 35 - R/concrete.R | 2 R/hasselayout.R | 250 +++++----- R/hasserls.R | 688 +++++++++++++++------------- R/internal.R | 142 ++--- R/internal_randomisation.R |only README.md | 37 - inst/doc/Introduction_to_hassediagrams.R | 12 inst/doc/Introduction_to_hassediagrams.Rmd | 14 inst/doc/Introduction_to_hassediagrams.html | 20 man/concrete.Rd | 2 man/hassediagrams-package.Rd | 12 man/hasselayout.Rd | 138 ++--- man/hasserls.Rd | 351 ++++++++------ tests |only vignettes/Introduction_to_hassediagrams.Rmd | 14 17 files changed, 941 insertions(+), 788 deletions(-)
Title: Check Clinical Trial Data Against 'CDISC' Open Rules
Description: Finds conformance problems in clinical trial data without
leaving R, using the openly published 'CDISC' Open Rules ('CORE'). Check a
single dataset while you are still writing the code that builds it, or a
whole study folder once it exists, and get the findings back as a tidy
data frame pointing at the exact row and variable. Reads transport
('XPT'), 'SAS', comma-separated and 'Dataset-JSON' files, plus
'Define-XML' when present, and 'USDM' study-design documents. Covers rules
for the 'SDTM', 'SEND', 'TIG' and 'USDM' standards. The
rules are bundled inside the package, so nothing is downloaded and your
data never leaves your machine: no internet, no API key, no account. When
a rule cannot be checked - because it needs a dataset you did not supply,
for instance - it is reported as skipped with the reason, never counted as
a pass. Meant as a quick first pass before a qualified validation system,
never as a replacement for one. An independent project: not affiliated
with or endorsed by 'C [...truncated...]
Author: Hrach Gevorgyan [aut, cre, cph]
Maintainer: Hrach Gevorgyan <hrach.gevorgyan@yandex.com>
Diff between coreval versions 0.1.0 dated 2026-09-12 and 0.3.0 dated 2026-09-15
DESCRIPTION | 30 - MD5 | 169 ++++- NAMESPACE | 1 NEWS.md | 537 ++++++++++++++++++ R/check_dataset.R | 137 +++- R/coreval-package.R | 2 R/define.R | 164 +++++ R/evaluate.R | 249 +++++++- R/export.R | 30 - R/match_datasets.R | 353 ++++++++++-- R/op_compare.R | 81 ++ R/op_date.R | 72 ++ R/op_grouping.R | 12 R/op_jsonata.R |only R/op_presence.R | 28 R/op_set.R | 58 +- R/op_xhtml.R |only R/operations.R | 861 +++++++++++++++++++++++++++++- R/read.R | 356 ++++++++++++ R/read_json.R |only R/read_usdm.R |only R/report.R | 13 R/result_tools.R | 38 + R/results.R | 313 ++++++++++ R/rules.R | 145 ++++- R/scope.R | 131 +++- R/zzz.R | 11 README.md | 739 ++++--------------------- inst/COPYRIGHTS | 156 +++++ inst/doc/coreval.R | 21 inst/doc/coreval.Rmd | 123 +++- inst/doc/coreval.html | 464 ++++++++-------- inst/extdata/ct_codelists.rds |only inst/extdata/ct_pref_terms.rds |only inst/extdata/dataset_labels.rds |only inst/extdata/js |only inst/extdata/jsonata |only inst/extdata/library_variables.rds |binary inst/extdata/rules.rds |binary inst/extdata/schema |only inst/extdata/usdm_entities.rds |only man/check_dataset.Rd | 32 - man/check_study.Rd | 53 + man/coreval-package.Rd | 6 man/figures |only man/filter_findings.Rd | 14 man/list_ct_packages.Rd |only man/write_findings.Rd | 15 tests/testthat/helper-fixtures.R |only tests/testthat/setup-threads.R |only tests/testthat/teardown-threads.R |only tests/testthat/test-broken-input.R |only tests/testthat/test-check-dataset.R | 5 tests/testthat/test-define.R | 150 +++++ tests/testthat/test-export.R | 37 + tests/testthat/test-match-datasets.R | 233 +++++++- tests/testthat/test-metadata-checks.R | 15 tests/testthat/test-op-compare.R | 41 + tests/testthat/test-op-date.R | 54 + tests/testthat/test-op-grouping.R | 20 tests/testthat/test-op-jsonata.R |only tests/testthat/test-op-presence.R | 36 - tests/testthat/test-op-sequence.R | 10 tests/testthat/test-op-set.R |only tests/testthat/test-op-value-resolution.R | 10 tests/testthat/test-operations.R | 288 +++++++++- tests/testthat/test-read-json.R |only tests/testthat/test-read-usdm.R |only tests/testthat/test-read.R | 254 ++++++++ tests/testthat/test-result-tools.R | 22 tests/testthat/test-results.R | 27 tests/testthat/test-rules.R | 169 +++++ tests/testthat/test-scope.R | 71 ++ tests/testthat/test-user-path.R |only vignettes/coreval.Rmd | 123 +++- 75 files changed, 5700 insertions(+), 1279 deletions(-)
Title: Machine Learning Models for Predicting Claim Counts
Description: Prediction of claim counts using the feature based development factors introduced in the manuscript Hiabu M., Hofman E. and Pittarello G. (2023) <doi:10.48550/arXiv.2312.14549>.
Implementation of Neural Networks, Extreme Gradient Boosting,
and Cox model with splines to optimise the partial log-likelihood of proportional hazard models.
Author: Emil Hofman [aut, cre, cph],
Gabriele Pittarello [aut, cph] ,
Munir Hiabu [aut, cph]
Maintainer: Emil Hofman <emil_hofman@hotmail.dk>
Diff between ReSurv versions 1.0.0 dated 2024-11-14 and 1.1.0 dated 2026-09-15
ReSurv-1.0.0/ReSurv/R/helpercrossvalidation.R |only ReSurv-1.0.0/ReSurv/R/helperreticulate.R |only ReSurv-1.0.0/ReSurv/R/ooslkhReSurvFit.R |only ReSurv-1.0.0/ReSurv/R/plotReSurvFit.R |only ReSurv-1.0.0/ReSurv/R/survival_crpsReSurvFit.R |only ReSurv-1.0.0/ReSurv/inst/doc/Manuscript_replication_material.R |only ReSurv-1.0.0/ReSurv/inst/doc/Manuscript_replication_material.Rmd |only ReSurv-1.0.0/ReSurv/inst/doc/Manuscript_replication_material.html |only ReSurv-1.0.0/ReSurv/inst/doc/cas_call.R |only ReSurv-1.0.0/ReSurv/inst/doc/cas_call.Rmd |only ReSurv-1.0.0/ReSurv/inst/doc/cas_call.html |only ReSurv-1.0.0/ReSurv/inst/doc/hp_tuning.R |only ReSurv-1.0.0/ReSurv/inst/doc/hp_tuning.Rmd |only ReSurv-1.0.0/ReSurv/inst/doc/hp_tuning.html |only ReSurv-1.0.0/ReSurv/inst/doc/simulate_individual_data.R |only ReSurv-1.0.0/ReSurv/inst/doc/simulate_individual_data.Rmd |only ReSurv-1.0.0/ReSurv/inst/doc/simulate_individual_data.html |only ReSurv-1.0.0/ReSurv/inst/doc/variables_importance.R |only ReSurv-1.0.0/ReSurv/inst/doc/variables_importance.Rmd |only ReSurv-1.0.0/ReSurv/inst/doc/variables_importance.html |only ReSurv-1.0.0/ReSurv/inst/python |only ReSurv-1.0.0/ReSurv/man/ReSurv.IndividualDataPP.Rd |only ReSurv-1.0.0/ReSurv/man/ReSurv.default.Rd |only ReSurv-1.0.0/ReSurv/man/ReSurvCV.IndividualDataPP.Rd |only ReSurv-1.0.0/ReSurv/man/ReSurvCV.default.Rd |only ReSurv-1.0.0/ReSurv/man/install_pyresurv.Rd |only ReSurv-1.0.0/ReSurv/man/ooslkh.Rd |only ReSurv-1.0.0/ReSurv/man/ooslkh.ReSurvFit.Rd |only ReSurv-1.0.0/ReSurv/man/ooslkh.default.Rd |only ReSurv-1.0.0/ReSurv/man/pkg.env.Rd |only ReSurv-1.0.0/ReSurv/man/plot.ReSurvFit.Rd |only ReSurv-1.0.0/ReSurv/man/survival_crps.Rd |only ReSurv-1.0.0/ReSurv/man/survival_crps.ReSurvFit.Rd |only ReSurv-1.0.0/ReSurv/man/survival_crps.default.Rd |only ReSurv-1.0.0/ReSurv/vignettes/Manuscript_replication_material.Rmd |only ReSurv-1.0.0/ReSurv/vignettes/cas_call.Rmd |only ReSurv-1.0.0/ReSurv/vignettes/hp_tuning.Rmd |only ReSurv-1.0.0/ReSurv/vignettes/simulate_individual_data.Rmd |only ReSurv-1.0.0/ReSurv/vignettes/variables_importance.Rmd |only ReSurv-1.1.0/ReSurv/DESCRIPTION | 29 ReSurv-1.1.0/ReSurv/MD5 | 113 ReSurv-1.1.0/ReSurv/NAMESPACE | 52 ReSurv-1.1.0/ReSurv/R/GlobalVariables.R | 19 ReSurv-1.1.0/ReSurv/R/IndividualDataPP.R | 715 +- ReSurv-1.1.0/ReSurv/R/ReSurv-package.R |only ReSurv-1.1.0/ReSurv/R/ReSurvIndividualData.R | 2200 +++++- ReSurv-1.1.0/ReSurv/R/ResurvcvIndividualData.R | 1201 ++- ReSurv-1.1.0/ReSurv/R/Score_Reserving.R |only ReSurv-1.1.0/ReSurv/R/clmplus_benchmark.R |only ReSurv-1.1.0/ReSurv/R/data_generator.R | 626 + ReSurv-1.1.0/ReSurv/R/helper-cv-method.R |only ReSurv-1.1.0/ReSurv/R/helper_baseline.R |only ReSurv-1.1.0/ReSurv/R/helper_cv.R |only ReSurv-1.1.0/ReSurv/R/helper_encoding.R |only ReSurv-1.1.0/ReSurv/R/helper_evaluation.R |only ReSurv-1.1.0/ReSurv/R/helper_fitting.R |only ReSurv-1.1.0/ReSurv/R/helper_hazard.R |only ReSurv-1.1.0/ReSurv/R/helper_hyperparams.R |only ReSurv-1.1.0/ReSurv/R/helper_simulation.R |only ReSurv-1.1.0/ReSurv/R/helper_torch.R |only ReSurv-1.1.0/ReSurv/R/helper_validation.R |only ReSurv-1.1.0/ReSurv/R/helper_xgboost_fit.R |only ReSurv-1.1.0/ReSurv/R/helperfunctions.R | 3337 ---------- ReSurv-1.1.0/ReSurv/R/helperxgboost.R | 25 ReSurv-1.1.0/ReSurv/R/predictReSurvFit.R | 1165 ++- ReSurv-1.1.0/ReSurv/R/predictReserve.R |only ReSurv-1.1.0/ReSurv/R/print_party.R |only ReSurv-1.1.0/ReSurv/R/summaryReSurvPredict.R | 100 ReSurv-1.1.0/ReSurv/README.md | 115 ReSurv-1.1.0/ReSurv/build/vignette.rds |binary ReSurv-1.1.0/ReSurv/inst/doc/getting-started.R |only ReSurv-1.1.0/ReSurv/inst/doc/getting-started.Rmd |only ReSurv-1.1.0/ReSurv/inst/doc/getting-started.html |only ReSurv-1.1.0/ReSurv/inst/references.bib | 446 - ReSurv-1.1.0/ReSurv/man/IndividualDataPP.Rd | 62 ReSurv-1.1.0/ReSurv/man/ReSurv-package.Rd |only ReSurv-1.1.0/ReSurv/man/ReSurv.Rd | 102 ReSurv-1.1.0/ReSurv/man/ReSurvCV.Rd | 59 ReSurv-1.1.0/ReSurv/man/Score_Reserving.Rd |only ReSurv-1.1.0/ReSurv/man/data_generator.Rd | 15 ReSurv-1.1.0/ReSurv/man/predict.ReSurvFit.Rd | 52 ReSurv-1.1.0/ReSurv/man/predictReserve.Rd |only ReSurv-1.1.0/ReSurv/man/print.ReSurvCV.Rd |only ReSurv-1.1.0/ReSurv/tests |only ReSurv-1.1.0/ReSurv/vignettes/getting-started.Rmd |only 85 files changed, 5316 insertions(+), 5117 deletions(-)
Title: Interaction Prediction Between Groundwater and Quarry Extension
Using Discrete Choice Models and Artificial Neural Networks
Description: An implementation of two interaction indices between extractive
activity and groundwater resources based on hazard and vulnerability
parameters used in the assessment of natural hazards. One index is based
on a discrete choice model and the other is relying on an artificial
neural network.
Author: Johan Barthelemy [aut, cre],
Timoteo Carletti [aut],
Louise Collier [aut],
Vincent Hallet [aut],
Marie Moriame [aut],
Annick Sartenaer [aut]
Maintainer: Johan Barthelemy <johan@uow.edu.au>
Diff between quarrint versions 1.0.0 dated 2016-11-24 and 1.0.1 dated 2026-09-15
DESCRIPTION | 17 ++++++++++------- MD5 | 8 ++++---- man/quarries.Rd | 14 +++++--------- man/quarrint-package.Rd | 2 +- man/quarry.Rd | 8 +++++--- 5 files changed, 25 insertions(+), 24 deletions(-)
Title: Bayes Factor Design for Two-Arm Binomial Trials
Description: Design and analysis of one- and two-stage binomial
clinical phase II trials using Bayes factors. Implements Bayes factors
for point-null and directional hypotheses, predictive densities under
different hypotheses, and power and sample size calibration. Both one-arm
trials with only a single treatment arm and two-arm trials with treatment
and control arm are implemented for the one- and two-stage designs.
Author: Riko Kelter [aut, cre]
Maintainer: Riko Kelter <rkelter@uni-koeln.de>
Diff between bfbin2arm versions 0.1.5 dated 2026-07-06 and 0.1.6 dated 2026-09-15
bfbin2arm-0.1.5/bfbin2arm/vignettes/figures/singlearm-onestage-rope-calibration-bayes.png |only bfbin2arm-0.1.5/bfbin2arm/vignettes/figures/singlearm-onestage-rope-calibration-frequentist.png |only bfbin2arm-0.1.5/bfbin2arm/vignettes/figures/singlearm-onestage-rope-calibration-full.png |only bfbin2arm-0.1.5/bfbin2arm/vignettes/figures/singlearm-onestage-rope-calibration-hybrid.png |only bfbin2arm-0.1.6/bfbin2arm/DESCRIPTION | 11 bfbin2arm-0.1.6/bfbin2arm/MD5 | 64 bfbin2arm-0.1.6/bfbin2arm/NAMESPACE | 16 bfbin2arm-0.1.6/bfbin2arm/R/bfbin2arm-package.R | 4 bfbin2arm-0.1.6/bfbin2arm/R/design-singlearm-twostage-rope-wrappers.R |only bfbin2arm-0.1.6/bfbin2arm/R/design_singlearm_onestage_rope.R | 36 bfbin2arm-0.1.6/bfbin2arm/R/design_singlearm_twostage_rope.R | 92 bfbin2arm-0.1.6/bfbin2arm/R/design_twoarm_onestage_rope.R |only bfbin2arm-0.1.6/bfbin2arm/R/s3-singlearm_rope_onestage.R | 183 bfbin2arm-0.1.6/bfbin2arm/R/s3-singlearm_rope_twostage.R | 197 bfbin2arm-0.1.6/bfbin2arm/R/s3-twoarm_rope_onestage.R |only bfbin2arm-0.1.6/bfbin2arm/R/utils_rope.R | 150 bfbin2arm-0.1.6/bfbin2arm/R/utils_rope_twoarm.R |only bfbin2arm-0.1.6/bfbin2arm/R/utils_rope_twostage.R | 372 bfbin2arm-0.1.6/bfbin2arm/build/vignette.rds |binary bfbin2arm-0.1.6/bfbin2arm/inst/doc/bfbin2arm-overview.html | 55 bfbin2arm-0.1.6/bfbin2arm/inst/doc/bfbin2arm-singlearm-onestage.html | 63 bfbin2arm-0.1.6/bfbin2arm/inst/doc/bfbin2arm-singlearm-twostage_bayesian.html | 63 bfbin2arm-0.1.6/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_frequentist.html | 48 bfbin2arm-0.1.6/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_full.html | 132 bfbin2arm-0.1.6/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_hybrid.Rmd | 1 bfbin2arm-0.1.6/bfbin2arm/inst/doc/bfbin2arm-singlearm_twostage_hybrid.html | 260 bfbin2arm-0.1.6/bfbin2arm/inst/doc/bfbin2arm-twoarm-twostage_Bayesian.html | 273 bfbin2arm-0.1.6/bfbin2arm/inst/doc/bfbin2arm-twoarm_onestage_Bayesian.html | 36 bfbin2arm-0.1.6/bfbin2arm/man/check_feasibility_rope.Rd |only bfbin2arm-0.1.6/bfbin2arm/man/design_singlearm_twostage_rope_equiv.Rd |only bfbin2arm-0.1.6/bfbin2arm/man/design_singlearm_twostage_rope_ni.Rd |only bfbin2arm-0.1.6/bfbin2arm/man/design_singlearm_twostage_rope_sup.Rd |only bfbin2arm-0.1.6/bfbin2arm/man/design_twoarm_onestage_rope.Rd |only bfbin2arm-0.1.6/bfbin2arm/man/plot.bfbin2armrope2armdesign.Rd |only bfbin2arm-0.1.6/bfbin2arm/tests/testthat.R |only bfbin2arm-0.1.6/bfbin2arm/tests/testthat/test-design-singlearm-twostage-rope-wrappers.R |only bfbin2arm-0.1.6/bfbin2arm/tests/testthat/test-design-singlearm-twostage-rope.R |only bfbin2arm-0.1.6/bfbin2arm/tests/testthat/test-design_singlearm_onestage_rope.R | 1 bfbin2arm-0.1.6/bfbin2arm/tests/testthat/test-twoarm-onestage-rope-pceH0.R |only bfbin2arm-0.1.6/bfbin2arm/tests/testthat/test-twoarm-rope-psock.R |only bfbin2arm-0.1.6/bfbin2arm/tests/testthat/test-utils-rope.R |only bfbin2arm-0.1.6/bfbin2arm/vignettes/bfbin2arm-singlearm_twostage_hybrid.Rmd | 1 bfbin2arm-0.1.6/bfbin2arm/vignettes/references.bib |34680 +++++++++- 43 files changed, 35418 insertions(+), 1320 deletions(-)
Title: POSIX Socket Programming for R
Description: Provides a small POSIX sockets interface to R, enabling direct network communication from R for applications that need low-level socket control or lightweight client and server connections. This package provides IPv4 and IPv6 support with 'TCP/UDP' protocols. It functional API with 'socket_create' and an R6 interface through 'Socket' object.
Author: Eduardo Hellas [aut, cre],
SAS [cph, fnd]
Maintainer: Eduardo Hellas <ehellas@gmail.com>
Diff between socketR versions 1.0.4 dated 2026-09-10 and 1.0.5 dated 2026-09-15
DESCRIPTION | 9 +++--- MD5 | 10 ++++--- README.md | 6 ++-- src/Makevars | 2 - src/posix/rconnections.c |only src/posix/rconnections.h |only src/posix/socketr.cpp | 64 +++++++++++++++++++---------------------------- 7 files changed, 42 insertions(+), 49 deletions(-)
Title: Honest Inference in Regression Discontinuity Designs
Description: Honest and nearly-optimal confidence intervals in fuzzy and sharp
regression discontinuity designs and for inference at a point based on local
linear regression. The implementation is based on Armstrong and Kolesár (2018)
<doi:10.3982/ECTA14434>, and Kolesár and Rothe (2018)
<doi:10.1257/aer.20160945>. Supports covariates, clustering, and weighting.
Author: Michal Kolesar [aut, cre, cph] ,
Tim Armstrong [ctb]
Maintainer: Michal Kolesar <kolesarmi@googlemail.com>
Diff between RDHonest versions 1.0.1 dated 2024-12-16 and 1.0.2 dated 2026-09-15
DESCRIPTION | 14 ++++++------- MD5 | 40 +++++++++++++++++++-------------------- NEWS.md | 7 ++++++ R/Cbound.R | 8 +++---- R/NPRfunctions.R | 29 ++++++++++++++-------------- R/RDHonest.R | 14 ++++++------- R/RD_opt.R | 8 +++---- R/checks.R | 8 +++---- R/cvb.R | 6 ++--- R/prelim_var.R | 6 ++--- R/utils.R | 6 ++--- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 7 ------ inst/doc/RDHonest.pdf |binary man/RDSmoothnessBound.Rd | 2 - tests/testthat/test_clustering.R | 9 +++++--- tests/testthat/test_covariates.R | 5 ++-- tests/testthat/test_kernels.R | 8 +++---- tests/testthat/test_npr.R | 2 - tests/testthat/test_rd.R | 8 +++---- 21 files changed, 97 insertions(+), 90 deletions(-)
Title: Fit a Cosinor Model Using a Generalized Mixed Modeling Framework
Description: Allows users to fit a cosinor model using the 'glmmTMB' framework.
This extends on existing cosinor modeling packages, including 'cosinor'
and 'circacompare', by including a wide range of available link functions
and the capability to fit mixed models. The cosinor model is described by
Cornelissen (2014) <doi:10.1186/1742-4682-11-16>.
Author: Rex Parsons [aut, cre] ,
Oliver Jayasinghe [aut],
Nicole White [aut] ,
Oliver Rawashdeh [aut, fnd] ,
Prasad Chunduri [ctb, fnd] ,
Margaret Doyle [ctb],
Michael Sachs [rev] ,
Joaquin Cavieres [rev]
Maintainer: Rex Parsons <rex.parsons94@gmail.com>
This is a re-admission after prior archival of version 0.2.1 dated 2024-10-31
Diff between GLMMcosinor versions 0.2.1 dated 2024-10-31 and 0.2.2 dated 2026-09-15
DESCRIPTION | 26 MD5 | 167 +- NEWS.md | 99 - R/amp_acro.R | 687 +++++----- R/autoplot.R | 440 +++--- R/cglmm.R | 21 R/data_processor.R | 107 - R/data_utils.R | 80 - R/polar_plot-background.R |only R/polar_plot-ellipses.R |only R/polar_plot-sub-polar.R |only R/polar_plot.R | 595 +------- R/predict.R | 1 R/print.R | 3 R/simulate_cosinor.R | 94 - R/srr-stats-standards.R | 1 R/summary.R | 48 R/test_cosinor.R | 234 +-- README.md | 25 build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/GLMMcosinor.R | 169 ++ inst/doc/GLMMcosinor.Rmd | 157 ++ inst/doc/GLMMcosinor.html | 210 ++- inst/doc/data-simulations.R | 114 - inst/doc/data-simulations.html | 196 +- inst/doc/mixed-models.R | 16 inst/doc/mixed-models.Rmd | 42 inst/doc/mixed-models.html | 61 inst/doc/model-specification.R | 95 - inst/doc/model-specification.Rmd | 15 inst/doc/model-specification.html | 421 ++---- inst/doc/model-visualizations.R | 20 inst/doc/model-visualizations.Rmd | 19 inst/doc/model-visualizations.html | 42 inst/doc/multiple-components.R | 86 - inst/doc/multiple-components.html | 119 - man/autoplot.cglmm.Rd | 2 man/autoplot_data_processor.Rd |only man/figures/methods-table.png |binary man/get_background_grid.Rd |only man/get_point_estimate_plot.Rd |only man/print.cglmmSubTest.Rd | 2 man/print.cglmmTest.Rd | 2 man/sub_ggplot.cglmm.polar.Rd |only man/test_cosinor_components.Rd | 4 man/test_cosinor_levels.Rd | 4 tests/testthat/_snaps/amp_acro.md | 48 tests/testthat/_snaps/autoplot/check-a-simple-plot-command.svg | 16 tests/testthat/_snaps/autoplot/check-plots-with-multiple-groups.svg | 16 tests/testthat/_snaps/autoplot/check-predict-ribbon-arg.svg | 4 tests/testthat/_snaps/autoplot/check-superimpose-data-arg.svg | 4 tests/testthat/_snaps/autoplot/model-with-covariates-not-specified.svg | 28 tests/testthat/_snaps/autoplot/plot-with-dispformula.svg | 4 tests/testthat/_snaps/autoplot/plot-with-multi-component.svg |only tests/testthat/_snaps/autoplot/plot-with-predict-ribbon-enabled.svg | 4 tests/testthat/_snaps/autoplot/plot-with-superimposed-data.svg | 4 tests/testthat/_snaps/autoplot/plot-with-time-as-covariate-2.svg | 20 tests/testthat/_snaps/autoplot/plot-with-time-as-covariate.svg | 28 tests/testthat/_snaps/autoplot/plot-with-ziformula.svg | 4 tests/testthat/_snaps/autoplot/simple-ziformula-model.svg | 422 +++--- tests/testthat/_snaps/polar_plot/plot-with-multi-component.svg |only tests/testthat/_snaps/polar_plot/polar-plot-without-grouping.svg | 66 tests/testthat/_snaps/polar_plot/test-polar-plot-configuration-1.svg | 90 - tests/testthat/_snaps/polar_plot/test-polar-plot-configuration-2.svg | 90 - tests/testthat/_snaps/polar_plot/test-polar-plot-configuration-3.svg | 90 - tests/testthat/_snaps/polar_plot/test-polar-plot-configuration-4.svg | 106 - tests/testthat/_snaps/polar_plot/test-polar-plot-configuration-5.svg | 90 - tests/testthat/_snaps/polar_plot/test-polar-plot-configuration-6.svg | 90 - tests/testthat/_snaps/polar_plot/test-polar-plot-configuration-7.svg | 90 - tests/testthat/_snaps/polar_plot/test-polar-plot-configuration-8.svg | 110 - tests/testthat/_snaps/polar_plot/test-polar-plot-configuration-9.svg | 110 - tests/testthat/_snaps/test_cosinor.md | 39 tests/testthat/fixtures/d_multi_comp.rds |only tests/testthat/fixtures/d_multi_grp.rds |only tests/testthat/fixtures/d_multi_grp_same_period.rds |only tests/testthat/fixtures/make-fixtures.R |only tests/testthat/fixtures/multi_model.rds |binary tests/testthat/fixtures/simple_model.rds |binary tests/testthat/test-amp_acro.R | 137 + tests/testthat/test-autoplot.R | 175 +- tests/testthat/test-cglmm.R | 55 tests/testthat/test-polar_plot.R | 48 tests/testthat/test-simulate_cosinor.R | 36 tests/testthat/test-summary.cosinor.R | 14 tests/testthat/test-test_cosinor.R | 16 vignettes/GLMMcosinor.Rmd | 157 ++ vignettes/fixtures/methods-table.R | 2 vignettes/mixed-models.Rmd | 42 vignettes/model-specification.Rmd | 15 vignettes/model-visualizations.Rmd | 19 91 files changed, 3742 insertions(+), 2975 deletions(-)
Title: Manipulate and Combine Probability Distributions
Description: Go beyond standard probability distributions such as the Normal
or Exponential by combining, shifting, maximizing, and otherwise
transforming distributions with simple, verb-based functions. Provides
easy access to a broader space of distributions more representative of
real-world systems such as river flows or insurance claims.
Part of the probaverse framework of packages to support advanced
statistical modeling and simulations with an intuitive workflow.
Author: Vincenzo Coia [aut, cre, cph],
Amogh Joshi [ctb],
Shuyi Tan [ctb],
Zhipeng Zhu [ctb]
Maintainer: Vincenzo Coia <vincenzo.coia@gmail.com>
Diff between distplyr versions 0.2.0 dated 2025-12-08 and 0.3.0 dated 2026-09-15
DESCRIPTION | 10 +++---- MD5 | 48 ++++++++++++++++++++++-------------- NAMESPACE | 15 +++++++++++ NEWS.md | 39 +++++++++++++++++++++++++++++ R/Math.R | 6 ++-- R/print.R |only R/support-inference.R |only R/sysdata.rda |binary R/utils.R | 31 +++++++++++++++++++++-- R/verb-exp.R | 22 ++++++++++++---- R/verb-flip.R | 10 +++---- R/verb-graft.R |only R/verb-invert.R | 9 +++--- R/verb-log.R | 15 ++++++----- R/verb-maximize.R | 35 +++++++++++++++----------- R/verb-minimize.R | 36 +++++++++++++++------------ R/verb-mix.R | 35 ++------------------------ R/verb-multiply.R | 9 +++--- R/verb-shift.R | 9 +++--- R/verb-trim.R |only build/vignette.rds |binary inst/doc/manipulating.html | 54 ++++++++++------------------------------- man/graft.Rd |only man/trim.Rd |only tests/testthat/test-graft.R |only tests/testthat/test-maximize.R | 15 +++++++---- tests/testthat/test-minimize.R | 15 +++++++---- tests/testthat/test-print.R |only tests/testthat/test-support.R |only tests/testthat/test-trim.R |only 30 files changed, 237 insertions(+), 176 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-25 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-01 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-18 0.0.2
Title: Create 'shiny' Inputs from Vectors, 'data.frames', or any R
Object
Description: Provides an interface to 'shiny' inputs used for filtering
vectors, data.frames, and other objects. 'S7'-based implementation
allows for seamless extensibility.
Author: Josh Livingston [cre, aut],
Novica Nakov [ctb]
Maintainer: Josh Livingston <joshwlivingston@gmail.com>
Diff between shinyfilters versions 0.3.0 dated 2026-01-17 and 0.3.1 dated 2026-09-15
DESCRIPTION | 8 MD5 | 36 NAMESPACE | 48 NEWS.md | 9 R/apply_filters.R | 308 +-- R/get_filter_logical.R | 309 +-- README.md | 283 +-- build/vignette.rds |binary inst/doc/customizing-shinyfilters.R | 286 +-- inst/doc/customizing-shinyfilters.html | 1258 +++++++------- inst/doc/filter-input-catalog.R | 552 +++--- inst/doc/filter-input-catalog.html | 2666 +++++++++++++++---------------- man/filterInput.Rd | 4 man/updateFilterInput.Rd | 4 tests/testthat/setup_00_S7.R | 4 tests/testthat/setup_02_test_app.R | 44 tests/testthat/test-apply_filters.R | 388 ++-- tests/testthat/test-errors.R | 3 tests/testthat/test-get_filter_logical.R | 54 19 files changed, 3159 insertions(+), 3105 deletions(-)