Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images.
Contains over 3000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlatio [...truncated...]
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat versions 3.6-2 dated 2026-07-31 and 3.6-3 dated 2026-09-27
DESCRIPTION | 16 +- MD5 | 55 ++++--- NEWS |binary R/news.R | 3 inst/doc/NAobjects.R | 40 ++--- inst/doc/NAobjects.Rnw | 21 +-- inst/doc/NAobjects.pdf |binary inst/doc/bugfixes.Rnw | 6 inst/doc/bugfixes.pdf |binary inst/doc/datasets.pdf |binary inst/doc/fv.pdf |binary inst/doc/getstart.pdf |binary inst/doc/packagesizes.txt | 1 inst/doc/replicated.R | 190 ++++++++++++++------------- inst/doc/replicated.Rnw | 272 +++++++++++++-------------------------- inst/doc/replicated.pdf |binary inst/doc/shapefiles.pdf |binary inst/doc/spatstatKnetsize.txt | 5 inst/doc/spatstatconvertsize.txt |only inst/doc/spatstatguisize.txt | 1 inst/doc/spatstatlocalsize.txt | 4 inst/doc/updates.R | 17 +- inst/doc/updates.Rnw | 120 +++++++++++++---- inst/doc/updates.pdf |binary inst/info/packagesizes.txt | 1 vignettes/NAobjects.Rnw | 21 +-- vignettes/bugfixes.Rnw | 6 vignettes/replicated.Rnw | 272 +++++++++++++-------------------------- vignettes/updates.Rnw | 120 +++++++++++++---- 29 files changed, 580 insertions(+), 591 deletions(-)
Title: Interactive 'Shiny' Apps for Building Statistical Intuition
Description: Provides interactive 'Shiny' applications for building intuition in
statistics and data science. The apps run locally and use
visualization, simulation, and repeated sampling to illustrate topics
such as probability distributions, permutation tests, analysis of
variance, linear regression, and sums of squares.
Author: Vikram B. Baliga [aut, cre, cph]
Maintainer: Vikram B. Baliga <vikram.baliga@ubc.ca>
Diff between statsapps versions 0.1.0 dated 2026-07-23 and 0.2.0 dated 2026-09-27
DESCRIPTION | 22 ++++--- MD5 | 25 +++++--- NAMESPACE | 1 NEWS.md | 46 +++++++++++---- R/run_power_precision_app.R |only README.md | 59 ++++++++++++++++++- inst/CITATION |only inst/apps/power_precision |only inst/apps/sums_squares/app.R | 18 +++++- man/figures/logo.png |only man/figures/statsapps_logo.png |only man/run_power_precision_app.Rd |only tests/testthat/test-app-files.R | 7 +- tests/testthat/test-app-internals.R | 101 +++++++++++++++++++++++++++++++--- tests/testthat/test-launchers.R | 9 ++- tests/testthat/test-power-precision.R |only 16 files changed, 239 insertions(+), 49 deletions(-)
Title: Encapsulated 'REDCap' Projects for Synchronized Data Pipelines
Description: Wraps dozens of 'REDCap' API endpoints into a standardized R6
object. Research Electronic Data Capture ('REDCap') is a survey and
database web application software maintained by Vanderbilt University.
It has a robust application programming interface (API) utilized by
several R packages. 'REDCapSync' uses 'redcapAPI' and 'REDCapR'
behind-the-scenes to retrieve all metadata, data, and log details for
a project. To minimize unnecessary server calls, the interim 'REDCap'
log is analyzed and used to only update necessary records.
Furthermore, the user can define custom datasets that save to a
directory. Those datasets continue to refresh when projects are
synced. Having a secure, standardized, API-efficient,
project-agnostic R object for 'REDCap' projects, streamlines
downstream use in scripts, functions, and shiny applications.
Author: Brandon Rose [cre, aut, cph] ,
Natalie Goulett [ctb]
Maintainer: Brandon Rose <thecodingdocs@gmail.com>
Diff between REDCapSync versions 0.1.1 dated 2026-06-09 and 0.2.0 dated 2026-09-27
DESCRIPTION | 17 +- MD5 | 65 ++++----- NAMESPACE | 219 ++++++++++++++++-------------- NEWS.md | 29 +++- R/REDCapSync-package.R | 3 R/REDCapSyncDataset.R | 38 ++++- R/REDCapSyncProject.R | 129 +++++++++++++++++ R/datasets.R | 245 +++++++++++++++++++++++++++++++--- R/fields.R |only R/project_helpers.R | 24 +-- R/redcap_api.R | 83 ++++++++--- R/redcap_log.R | 1 R/repairs.R | 8 + R/setup.R | 14 + R/sync.R | 4 R/utils-assert.R | 56 +++++++ R/utils-xlsx-csv.R | 2 R/utils.R | 57 ++++--- build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/Datasets.R | 30 +++- inst/doc/Datasets.Rmd | 32 +++- inst/doc/Datasets.html | 62 ++++++-- inst/doc/Projects.html | 43 ++--- inst/doc/Tokens.Rmd | 2 inst/doc/Tokens.html | 2 man/dataset.Rd | 33 +++- man/project.Rd | 156 ++++++++++++++++++++- tests/testthat/test-datasets.R | 10 - tests/testthat/test-project_helpers.R | 2 tests/testthat/test-tokens.R | 3 tests/testthat/test-utils.R | 17 +- vignettes/Datasets.Rmd | 32 +++- vignettes/Tokens.Rmd | 2 34 files changed, 1102 insertions(+), 320 deletions(-)
Title: Improved Random Number Generator Seeding
Description: A procedure for seeding R's built in random number
generators using a variable-length sequence of values.
Accumulates input entropy into a 256-bit hash digest or "ironseed"
and is able to generate a variable-length sequence of output seeds
from an ironseed.
Author: Reed Cartwright [aut, cre] ,
National Science Foundation DBI-1929850 [fnd]
Maintainer: Reed Cartwright <racartwright@gmail.com>
Diff between ironseed versions 0.3.0 dated 2025-11-18 and 0.4.0 dated 2026-09-27
ironseed-0.3.0/ironseed/R/utils.R |only ironseed-0.4.0/ironseed/DESCRIPTION | 10 ironseed-0.4.0/ironseed/MD5 | 60 - ironseed-0.4.0/ironseed/NAMESPACE | 1 ironseed-0.4.0/ironseed/NEWS.md | 32 ironseed-0.4.0/ironseed/R/aaa.R | 17 ironseed-0.4.0/ironseed/R/digest.R |only ironseed-0.4.0/ironseed/R/ironseed.R | 51 - ironseed-0.4.0/ironseed/R/set_seed.R | 14 ironseed-0.4.0/ironseed/R/stream.R | 27 ironseed-0.4.0/ironseed/R/with.R | 19 ironseed-0.4.0/ironseed/README.md | 56 - ironseed-0.4.0/ironseed/build/partial.rdb |binary ironseed-0.4.0/ironseed/inst/WORDLIST |only ironseed-0.4.0/ironseed/inst/tinytest/test_digest.R |only ironseed-0.4.0/ironseed/inst/tinytest/test_ironseed-hash.R |only ironseed-0.4.0/ironseed/inst/tinytest/test_ironseed-values.R | 123 +- ironseed-0.4.0/ironseed/inst/tinytest/test_ironseed.R | 66 - ironseed-0.4.0/ironseed/inst/tinytest/test_set-seed.R | 29 ironseed-0.4.0/ironseed/inst/tinytest/test_stream.R | 14 ironseed-0.4.0/ironseed/inst/tinytest/test_with.R | 92 +- ironseed-0.4.0/ironseed/man/digest.Rd |only ironseed-0.4.0/ironseed/man/figures/README-analysis_256-1.png |binary ironseed-0.4.0/ironseed/man/figures/README-analysis_32-1.png |binary ironseed-0.4.0/ironseed/man/fill_random_seed.Rd | 4 ironseed-0.4.0/ironseed/man/ironseed-package.Rd | 5 ironseed-0.4.0/ironseed/man/ironseed.Rd | 24 ironseed-0.4.0/ironseed/man/ironseed_stream.Rd | 14 ironseed-0.4.0/ironseed/man/with_ironseed.Rd | 15 ironseed-0.4.0/ironseed/src/base58.c | 10 ironseed-0.4.0/ironseed/src/compat.c | 10 ironseed-0.4.0/ironseed/src/init.c | 9 ironseed-0.4.0/ironseed/src/init.h | 4 ironseed-0.4.0/ironseed/src/ironseed.c | 442 ++++++---- 34 files changed, 733 insertions(+), 415 deletions(-)
Title: Test for Differences in Diversification Rates over Time
Description: Employ time-calibrated phylogenies and trait/range data to test for
differences in diversification rates over evolutionary time. Extend
the STRAPP test from BAMMtools::traitDependentBAMM() to any time step
along phylogenies. See inst/COPYRIGHTS for details on third-party code.
Author: Mael Dore [aut, cre, cph] ,
Dan Rabosky [ctb],
Mike Grundler [ctb],
Huateng Huang [ctb],
Pascal Title [ctb],
Liam Revell [ctb],
Nicholas J. Matzke [ctb]
Maintainer: Mael Dore <mael.dore@gmail.com>
Diff between deepSTRAPP versions 1.0.0 dated 2026-01-19 and 1.1.0 dated 2026-09-27
deepSTRAPP-1.0.0/deepSTRAPP/R/cut_contMap_for_focal_time.R |only deepSTRAPP-1.0.0/deepSTRAPP/man/BSM_to_phytools_simmap.Rd |only deepSTRAPP-1.0.0/deepSTRAPP/man/extract_most_likely_ranges_from_densityMaps_for_focal_time.Rd |only deepSTRAPP-1.0.0/deepSTRAPP/man/extract_most_likely_states_from_densityMaps_for_focal_time.Rd |only deepSTRAPP-1.0.0/deepSTRAPP/man/extract_most_likely_trait_values_from_contMap_for_focal_time.Rd |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_BAMM_rates_cat_2lvl_eval-1.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_BAMM_rates_cat_2lvl_eval-2.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_BAMM_rates_cat_2lvl_eval-3.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_histogram_STRAPP_tests_cat_2lvl_eval-1.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_rates_through_time_cat_2lvl_eval-1.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_rates_vs_traits_cat_2lvl_eval-1.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_rates_vs_traits_eval-1.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_results_cat_2lvl_eval-1.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_trait_vs_rate_maps_cat_2lvl_eval-1.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_trait_vs_rate_maps_cat_2lvl_eval-2.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_traits_vs_rates_on_phylogeny_cat_2lvl_eval-1.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_traits_vs_rates_on_phylogeny_cat_2lvl_eval-2.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_updated_densityMaps_cat_2lvl_eval-1.png |only deepSTRAPP-1.0.0/deepSTRAPP/man/figures/README-plot_updated_densityMaps_cat_2lvl_eval-2.png |only deepSTRAPP-1.0.0/deepSTRAPP/vignettes/figures/5_Explore_plot_RTT_2_Example_multinominal.PNG |only deepSTRAPP-1.1.0/deepSTRAPP/DESCRIPTION | 12 deepSTRAPP-1.1.0/deepSTRAPP/MD5 | 344 - deepSTRAPP-1.1.0/deepSTRAPP/NAMESPACE | 31 deepSTRAPP-1.1.0/deepSTRAPP/NEWS.md | 51 deepSTRAPP-1.1.0/deepSTRAPP/R/build_BAMM_object.R |only deepSTRAPP-1.1.0/deepSTRAPP/R/compute_STRAPP_test_for_focal_time.R | 2082 ++++++++-- deepSTRAPP-1.1.0/deepSTRAPP/R/convert_BSMs_to_simmaps.R |only deepSTRAPP-1.1.0/deepSTRAPP/R/convert_contsimmap_to_contMaps.R |only deepSTRAPP-1.1.0/deepSTRAPP/R/convert_simmaps_to_densityMaps.R |only deepSTRAPP-1.1.0/deepSTRAPP/R/cut_contMaps_for_focal_time.R |only deepSTRAPP-1.1.0/deepSTRAPP/R/cut_densityMaps_for_focal_time.R | 45 deepSTRAPP-1.1.0/deepSTRAPP/R/cut_phylo_for_focal_time.R | 118 deepSTRAPP-1.1.0/deepSTRAPP/R/cut_simmaps_for_focal_time.R |only deepSTRAPP-1.1.0/deepSTRAPP/R/datasets_doc_for_CRAN.R | 409 + deepSTRAPP-1.1.0/deepSTRAPP/R/extract_all_trait_values_for_focal_time.R |only deepSTRAPP-1.1.0/deepSTRAPP/R/extract_diversification_data_melted_df_for_focal_time.R | 11 deepSTRAPP-1.1.0/deepSTRAPP/R/extract_most_likely_trait_values_for_focal_time.R | 1881 +++++++-- deepSTRAPP-1.1.0/deepSTRAPP/R/extract_trait_data_melted_df_for_focal_time.R |only deepSTRAPP-1.1.0/deepSTRAPP/R/is_dev_version.R | 6 deepSTRAPP-1.1.0/deepSTRAPP/R/plot_BAMM_rates.R | 147 deepSTRAPP-1.1.0/deepSTRAPP/R/plot_STRAPP_pvalues_over_time.R | 69 deepSTRAPP-1.1.0/deepSTRAPP/R/plot_contMap.R | 45 deepSTRAPP-1.1.0/deepSTRAPP/R/plot_densityMaps_overlay.R | 51 deepSTRAPP-1.1.0/deepSTRAPP/R/plot_histogram_STRAPP_test_for_focal_time.R | 96 deepSTRAPP-1.1.0/deepSTRAPP/R/plot_histograms_STRAPP_tests_over_time.R | 109 deepSTRAPP-1.1.0/deepSTRAPP/R/plot_rates_through_time.R | 546 +- deepSTRAPP-1.1.0/deepSTRAPP/R/plot_rates_vs_trait_data_for_focal_time.R | 358 + deepSTRAPP-1.1.0/deepSTRAPP/R/plot_rates_vs_trait_data_over_time.R | 136 deepSTRAPP-1.1.0/deepSTRAPP/R/plot_traits_vs_rates_on_phylogeny_for_focal_time.R | 194 deepSTRAPP-1.1.0/deepSTRAPP/R/plot_traits_vs_rates_on_phylogeny_over_time.R | 142 deepSTRAPP-1.1.0/deepSTRAPP/R/prepare_diversification_data.R | 466 +- deepSTRAPP-1.1.0/deepSTRAPP/R/prepare_trait_data.R | 1270 +----- deepSTRAPP-1.1.0/deepSTRAPP/R/prune_BAMM_object.R |only deepSTRAPP-1.1.0/deepSTRAPP/R/run_deepSTRAPP_for_focal_time.R | 681 ++- deepSTRAPP-1.1.0/deepSTRAPP/R/run_deepSTRAPP_over_time.R | 647 ++- deepSTRAPP-1.1.0/deepSTRAPP/R/update_maps_for_focal_time.R | 8 deepSTRAPP-1.1.0/deepSTRAPP/R/update_rates_and_regimes_for_focal_time.R | 336 - deepSTRAPP-1.1.0/deepSTRAPP/README.md | 289 - deepSTRAPP-1.1.0/deepSTRAPP/build/vignette.rds |binary deepSTRAPP-1.1.0/deepSTRAPP/data/Ponerinae_cat_2lvl_data_old_calib.rda |binary deepSTRAPP-1.1.0/deepSTRAPP/data/Ponerinae_tree_old_calib.rda |binary deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/cut_phylogenies.R | 111 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/cut_phylogenies.Rmd | 1330 +++--- deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/cut_phylogenies.html | 339 - deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/deepSTRAPP.Rmd | 174 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/deepSTRAPP.html | 37 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/deepSTRAPP_biogeographic_data.R | 150 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/deepSTRAPP_biogeographic_data.Rmd | 161 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/deepSTRAPP_biogeographic_data.html | 363 - deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/deepSTRAPP_categorical_data.R | 149 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/deepSTRAPP_categorical_data.Rmd | 156 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/deepSTRAPP_categorical_data.html | 428 +- deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/deepSTRAPP_continuous_data.R | 127 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/deepSTRAPP_continuous_data.Rmd | 135 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/deepSTRAPP_continuous_data.html | 331 - deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/explore_STRAPP_test_types.R | 148 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/explore_STRAPP_test_types.Rmd | 154 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/explore_STRAPP_test_types.html | 507 +- deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/handle_uncertainty.R |only deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/handle_uncertainty.Rmd |only deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/handle_uncertainty.html |only deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/import_external_analyses.R |only deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/import_external_analyses.Rmd |only deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/import_external_analyses.html |only deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/main_tutorial.R | 125 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/main_tutorial.Rmd | 127 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/main_tutorial.html | 320 - deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_biogeographic_range_evolution.R | 75 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_biogeographic_range_evolution.Rmd | 79 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_biogeographic_range_evolution.html | 284 - deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_categorical_trait_evolution.R | 54 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_categorical_trait_evolution.Rmd | 58 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_categorical_trait_evolution.html | 184 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_continuous_trait_evolution.R | 161 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_continuous_trait_evolution.Rmd | 91 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_continuous_trait_evolution.html | 169 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_diversification_dynamics.R | 36 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_diversification_dynamics.Rmd | 40 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/model_diversification_dynamics.html | 63 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/plot_rates_through_time.R | 46 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/plot_rates_through_time.Rmd | 50 deepSTRAPP-1.1.0/deepSTRAPP/inst/doc/plot_rates_through_time.html | 317 - deepSTRAPP-1.1.0/deepSTRAPP/man/Ponerinae_binary_range_table.Rd | 2 deepSTRAPP-1.1.0/deepSTRAPP/man/Ponerinae_biogeo_data_old_calib.Rd | 18 deepSTRAPP-1.1.0/deepSTRAPP/man/Ponerinae_cat_2lvl_data_old_calib.Rd | 6 deepSTRAPP-1.1.0/deepSTRAPP/man/Ponerinae_cat_3lvl_data_old_calib.Rd | 8 deepSTRAPP-1.1.0/deepSTRAPP/man/Ponerinae_trait_cont_tip_data_10My.Rd | 6 deepSTRAPP-1.1.0/deepSTRAPP/man/Ponerinae_trait_tip_data.Rd | 6 deepSTRAPP-1.1.0/deepSTRAPP/man/Ponerinae_tree.Rd | 6 deepSTRAPP-1.1.0/deepSTRAPP/man/Ponerinae_tree_old_calib.Rd | 6 deepSTRAPP-1.1.0/deepSTRAPP/man/aggregate_contMaps.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/build_BAMM_object.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/compute_STRAPP_test_for_focal_time.Rd | 207 deepSTRAPP-1.1.0/deepSTRAPP/man/convert_BSM_to_simmap.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/convert_contsimmap_to_contMaps.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/convert_simmaps_to_densityMaps.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/cut_contMap_for_focal_time.Rd | 25 deepSTRAPP-1.1.0/deepSTRAPP/man/cut_contMaps_for_focal_time.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/cut_densityMap_for_focal_time.Rd | 19 deepSTRAPP-1.1.0/deepSTRAPP/man/cut_densityMaps_for_focal_time.Rd | 17 deepSTRAPP-1.1.0/deepSTRAPP/man/cut_phylo_for_focal_time.Rd | 12 deepSTRAPP-1.1.0/deepSTRAPP/man/cut_simmap_for_focal_time.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/cut_simmaps_for_focal_time.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/eel_biogeo_data.Rd | 18 deepSTRAPP-1.1.0/deepSTRAPP/man/eel_cat_3lvl_data.Rd | 10 deepSTRAPP-1.1.0/deepSTRAPP/man/extract_all_trait_values_for_focal_time.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/extract_diversification_data_melted_df_for_focal_time.Rd | 6 deepSTRAPP-1.1.0/deepSTRAPP/man/extract_most_likely_trait_values_for_focal_time.Rd | 113 deepSTRAPP-1.1.0/deepSTRAPP/man/extract_trait_data_melted_df_for_focal_time.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/figures/deepSTRAPP_workflow.png |binary deepSTRAPP-1.1.0/deepSTRAPP/man/is_dev_version.Rd | 5 deepSTRAPP-1.1.0/deepSTRAPP/man/mammals.Rd | 2 deepSTRAPP-1.1.0/deepSTRAPP/man/plot_BAMM_rates.Rd | 95 deepSTRAPP-1.1.0/deepSTRAPP/man/plot_STRAPP_pvalues_over_time.Rd | 25 deepSTRAPP-1.1.0/deepSTRAPP/man/plot_contMap.Rd | 13 deepSTRAPP-1.1.0/deepSTRAPP/man/plot_densityMaps_overlay.Rd | 25 deepSTRAPP-1.1.0/deepSTRAPP/man/plot_histogram_STRAPP_test_for_focal_time.Rd | 42 deepSTRAPP-1.1.0/deepSTRAPP/man/plot_histograms_STRAPP_tests_over_time.Rd | 53 deepSTRAPP-1.1.0/deepSTRAPP/man/plot_rates_through_time.Rd | 36 deepSTRAPP-1.1.0/deepSTRAPP/man/plot_rates_vs_trait_data_for_focal_time.Rd | 68 deepSTRAPP-1.1.0/deepSTRAPP/man/plot_rates_vs_trait_data_over_time.Rd | 59 deepSTRAPP-1.1.0/deepSTRAPP/man/plot_traits_vs_rates_on_phylogeny_for_focal_time.Rd | 100 deepSTRAPP-1.1.0/deepSTRAPP/man/plot_traits_vs_rates_on_phylogeny_over_time.Rd | 104 deepSTRAPP-1.1.0/deepSTRAPP/man/prepare_diversification_data.Rd | 96 deepSTRAPP-1.1.0/deepSTRAPP/man/prepare_trait_data.Rd | 118 deepSTRAPP-1.1.0/deepSTRAPP/man/prune_BAMM_object.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/run_deepSTRAPP_for_focal_time.Rd | 409 + deepSTRAPP-1.1.0/deepSTRAPP/man/run_deepSTRAPP_over_time.Rd | 340 + deepSTRAPP-1.1.0/deepSTRAPP/man/select_best_model_from_BioGeoBEARS.Rd | 11 deepSTRAPP-1.1.0/deepSTRAPP/man/select_best_trait_model_from_geiger.Rd | 2 deepSTRAPP-1.1.0/deepSTRAPP/man/subset_BAMM_object.Rd |only deepSTRAPP-1.1.0/deepSTRAPP/man/update_rates_and_regimes_for_focal_time.Rd | 87 deepSTRAPP-1.1.0/deepSTRAPP/man/whale_BAMM_object.Rd | 46 deepSTRAPP-1.1.0/deepSTRAPP/vignettes/cut_phylogenies.Rmd | 1330 +++--- deepSTRAPP-1.1.0/deepSTRAPP/vignettes/deepSTRAPP.Rmd | 174 deepSTRAPP-1.1.0/deepSTRAPP/vignettes/deepSTRAPP_biogeographic_data.Rmd | 161 deepSTRAPP-1.1.0/deepSTRAPP/vignettes/deepSTRAPP_categorical_data.Rmd | 156 deepSTRAPP-1.1.0/deepSTRAPP/vignettes/deepSTRAPP_continuous_data.Rmd | 135 deepSTRAPP-1.1.0/deepSTRAPP/vignettes/explore_STRAPP_test_types.Rmd | 154 deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/0_deepSTRAPP_categorical_2lvl_data_4.2_plot_STRAPP_tests.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/0_deepSTRAPP_categorical_2lvl_data_4.4_plot_rates_vs_traits.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.1_deepSTRAPP_continuous_data_4.1_plot_pvalues.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.1_deepSTRAPP_continuous_data_4.2_plot_STRAPP_tests.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.1_deepSTRAPP_continuous_data_4.4_plot_rates_vs_traits.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.2_deepSTRAPP_categorical_3lvl_data_4.1_plot_pvalues_1.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.2_deepSTRAPP_categorical_3lvl_data_4.1_plot_pvalues_2.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.2_deepSTRAPP_categorical_3lvl_data_4.2_plot_histograms_1.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.2_deepSTRAPP_categorical_3lvl_data_4.2_plot_histograms_2.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.2_deepSTRAPP_categorical_3lvl_data_4.3_plot_rates_through_time.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.2_deepSTRAPP_categorical_3lvl_data_4.4_plot_rates_vs_traits.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.3_deepSTRAPP_biogeographic_data_4.1_plot_pvalues.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.3_deepSTRAPP_biogeographic_data_4.2_plot_STRAPP_tests.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.3_deepSTRAPP_biogeographic_data_4.3_plot_rates_through_time.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/1.3_deepSTRAPP_biogeographic_data_4.4_plot_rates_vs_traits.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/2.1_Model_continuous_trait_evolution_2_Cont_simmaps.PNG |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/4_Explore_STRAPP_hypotheses_1.2_Example_continuous_two_tailed_1.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/4_Explore_STRAPP_hypotheses_1.2_Example_continuous_two_tailed_2.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/4_Explore_STRAPP_hypotheses_1.3_Example_continuous_one_tailed.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/4_Explore_STRAPP_hypotheses_2.2_Example_cat_2lvl_two_tailed.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/4_Explore_STRAPP_hypotheses_2.2_Example_cat_2lvl_two_tailed_2.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/4_Explore_STRAPP_hypotheses_2.3_Example_cat_2lvl_one_tailed.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/4_Explore_STRAPP_hypotheses_3.2_Example_cat_3lvl_overall.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/4_Explore_STRAPP_hypotheses_3.2_Example_cat_3lvl_overall_2.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/4_Explore_STRAPP_hypotheses_3.3_Example_cat_3lvl_two_tailed.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/4_Explore_STRAPP_hypotheses_3.4_Example_cat_3lvl_one_tailed.PNG |binary deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/5_Explore_plot_RTT_2_Example_multinomial.PNG |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/6_Handle_uncertainty_4.2_Histos.PNG |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/6_Handle_uncertainty_4.3_Rates_vs_traits.PNG |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/7_Import_external_analyses_1.2_Cont_simmaps.PNG |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/7_Import_external_analyses_1.4.4_Biogeo_simmaps.PNG |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/7_Import_external_analyses_1.4.5_Biogeo_densityMaps_overlay.PNG |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/7_Import_external_analyses_1.4.5_Biogeo_densityMaps_per_ranges.PNG |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/7_Import_external_analyses_2.3_Pruned_BAMM_object.PNG |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/7_Import_external_analyses_3_Rates_vs_states.PNG |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/figures/deepSTRAPP_modularity.png |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/handle_uncertainty.Rmd |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/import_external_analyses.Rmd |only deepSTRAPP-1.1.0/deepSTRAPP/vignettes/main_tutorial.Rmd | 127 deepSTRAPP-1.1.0/deepSTRAPP/vignettes/model_biogeographic_range_evolution.Rmd | 79 deepSTRAPP-1.1.0/deepSTRAPP/vignettes/model_categorical_trait_evolution.Rmd | 58 deepSTRAPP-1.1.0/deepSTRAPP/vignettes/model_continuous_trait_evolution.Rmd | 91 deepSTRAPP-1.1.0/deepSTRAPP/vignettes/model_diversification_dynamics.Rmd | 40 deepSTRAPP-1.1.0/deepSTRAPP/vignettes/plot_rates_through_time.Rmd | 50 203 files changed, 14086 insertions(+), 8349 deletions(-)
Title: Spatial and Environmental Blocking for Cross-Validation
Description: Creates spatially or environmentally separated, or
group-preserving, training and testing folds for k-fold,
leave-group-out, and leave-one-out cross-validation. Provides spatial
blocking, clustering, buffering, and nearest-neighbour distance-matching
methods, together with tools to visualise folds, summarise fold sizes and class balance,
and assess train–test separation and environmental novelty. Also estimates spatial
autocorrelation ranges in point samples and continuous raster covariates
to provide an initial distance scale for designing spatial folds. Methods
are described in Valavi, R. et al. (2019)
<doi:10.1111/2041-210X.13107>.
Author: Roozbeh Valavi [aut, cre] ,
Jane Elith [aut],
Jose Lahoz-Monfort [aut],
Ian Flint [aut],
Gurutzeta Guillera-Arroita [aut]
Maintainer: Roozbeh Valavi <valavi.r@gmail.com>
Diff between blockCV versions 4.0-0 dated 2026-08-20 and 4.0-1 dated 2026-09-27
DESCRIPTION | 8 +- MD5 | 47 +++++++-------- NEWS.md | 10 +++ R/cv_cluster.R | 75 +++++++++++++++++++----- R/cv_distance.R | 111 +++--------------------------------- R/cv_knndm.R | 27 +------- R/cv_plot.R | 40 +++++++----- R/cv_spatial.R | 8 +- inst/doc/tutorial_1.html | 50 ++++++++-------- inst/doc/tutorial_2.html | 18 ++--- inst/doc/tutorial_3.html | 10 +-- inst/doc/tutorial_4.html | 6 - man/cv_cluster.Rd | 8 +- man/cv_distance.Rd | 25 -------- man/cv_plot.Rd | 3 tests/testthat/test-checks.R |only tests/testthat/test-cv_cluster.R | 81 +++++++++++++++++++++----- tests/testthat/test-cv_distance.R | 54 ++--------------- tests/testthat/test-cv_group.R | 50 ++++++++++++++++ tests/testthat/test-cv_knndm.R | 20 ++++++ tests/testthat/test-cv_nndm.R | 21 ++++++ tests/testthat/test-cv_plot.R | 42 ++++++++----- tests/testthat/test-cv_similarity.R | 13 ++++ tests/testthat/test-cv_spatial.R | 47 +++++++++++++++ tests/testthat/test-cv_summary.R | 37 ++++++++++++ 25 files changed, 485 insertions(+), 326 deletions(-)
Title: Branch-Level Inference Framework for Recognizing Optimal Shifts
in Traits
Description: Methods for detecting, visualizing, and evaluating cladogenic shifts in multivariate trait data on phylogenies. Implements penalized-likelihood multivariate generalized least squares models and a greedy step-wise shift search for high-dimensional trait datasets and large trees via searchOptimalConfiguration(). Provides tools for inspecting search trajectories, summarizing branch and lineage rates, analyzing shift timing and magnitudes, estimating post-hoc regime covariance and integration, and running simulation-based calibration and tuning. The search follows approaches developed in Smith et al. (2023) <doi:10.1111/nph.19099> and Berv et al. (2024) <doi:10.1126/sciadv.adp0114>. Methods build on multivariate generalized least squares approaches described in Clavel et al. (2019) <doi:10.1093/sysbio/syy045> and implemented in the mvgls() function from the 'mvMORPH' package. Documentation and worked examples are available at <https://jakeberv.com/bifrost/>.
Author: Jacob S. Berv [aut, cre, cph, fnd] ,
Nathan Fox [aut] ,
Matt J. Thorstensen [aut] ,
Henry Lloyd-Laney [aut] ,
Emily M. Troyer [aut] ,
Rafael A. Rivero-Vega [aut] ,
Stephen A. Smith [aut, fnd] ,
Matt Friedman [aut, fnd] ,
David F. Fouhey [aut, fnd] ,
[...truncated...]
Maintainer: Jacob S. Berv <jacob.berv@gmail.com>
Diff between bifrost versions 0.1.4 dated 2026-04-16 and 0.2.0 dated 2026-09-27
bifrost-0.1.4/bifrost/R/plot_ic_acceptance_matrix.R |only bifrost-0.1.4/bifrost/build/vignette.rds |only bifrost-0.1.4/bifrost/inst/doc |only bifrost-0.1.4/bifrost/inst/extdata |only bifrost-0.1.4/bifrost/man/plot_ic_acceptance_matrix.Rd |only bifrost-0.1.4/bifrost/tests/testthat/test-addShiftToModel_alt.R |only bifrost-0.1.4/bifrost/tests/testthat/test-fitMvglsAndExtractBIC.formula.R |only bifrost-0.1.4/bifrost/tests/testthat/test-fitMvglsAndExtractGIC.formula.r |only bifrost-0.1.4/bifrost/tests/testthat/test-plot_ic_acceptance_matrix.R |only bifrost-0.1.4/bifrost/vignettes |only bifrost-0.2.0/bifrost/DESCRIPTION | 28 bifrost-0.2.0/bifrost/MD5 | 184 +- bifrost-0.2.0/bifrost/NAMESPACE | 153 + bifrost-0.2.0/bifrost/NEWS.md | 126 + bifrost-0.2.0/bifrost/R/bifrost_search-methods.R | 12 bifrost-0.2.0/bifrost/R/example-data.R |only bifrost-0.2.0/bifrost/R/formula-normalization.R |only bifrost-0.2.0/bifrost/R/icTrajectory.R |only bifrost-0.2.0/bifrost/R/lineage_rates.R |only bifrost-0.2.0/bifrost/R/plotting-utils.R | 32 bifrost-0.2.0/bifrost/R/rate-map-plot.R |only bifrost-0.2.0/bifrost/R/rate-map.R |only bifrost-0.2.0/bifrost/R/regime-integration.R |only bifrost-0.2.0/bifrost/R/searchOptimalConfiguration-helpers.R |only bifrost-0.2.0/bifrost/R/searchOptimalConfiguration.R | 774 ++++----- bifrost-0.2.0/bifrost/R/shift-distributions.R |only bifrost-0.2.0/bifrost/R/simulation-generators.R |only bifrost-0.2.0/bifrost/R/simulation-helpers.R |only bifrost-0.2.0/bifrost/R/simulation-methods.R |only bifrost-0.2.0/bifrost/R/simulation-studies.R |only bifrost-0.2.0/bifrost/R/simulation-template.R |only bifrost-0.2.0/bifrost/R/simulation-tuning.R |only bifrost-0.2.0/bifrost/R/utils.R | 179 +- bifrost-0.2.0/bifrost/README.md | 116 + bifrost-0.2.0/bifrost/build/partial.rdb |only bifrost-0.2.0/bifrost/inst/CITATION | 7 bifrost-0.2.0/bifrost/inst/WORDLIST | 180 ++ bifrost-0.2.0/bifrost/man/as.data.frame.bifrost_search_tuning_grid.Rd |only bifrost-0.2.0/bifrost/man/as.data.frame.bifrost_search_tuning_selection.Rd |only bifrost-0.2.0/bifrost/man/as.data.frame.bifrost_shift_recovery_evaluation.Rd |only bifrost-0.2.0/bifrost/man/as.data.frame.bifrost_simulation_study.Rd |only bifrost-0.2.0/bifrost/man/as.data.frame.regime_correlation_pca.Rd |only bifrost-0.2.0/bifrost/man/as.data.frame.regime_integration_relationships.Rd |only bifrost-0.2.0/bifrost/man/as.data.frame.regime_module_diagnostics.Rd |only bifrost-0.2.0/bifrost/man/bifrost_example_file.Rd |only bifrost-0.2.0/bifrost/man/bootstrap_rate_distribution.Rd |only bifrost-0.2.0/bifrost/man/compare_shift_magnitudes.Rd |only bifrost-0.2.0/bifrost/man/createSimulationTemplate.Rd |only bifrost-0.2.0/bifrost/man/distribution-fit-data-frames.Rd |only bifrost-0.2.0/bifrost/man/evaluateShiftRecovery.Rd |only bifrost-0.2.0/bifrost/man/figures/schmidt-sciences-dark.png |only bifrost-0.2.0/bifrost/man/fisher_z_transform.Rd |only bifrost-0.2.0/bifrost/man/fit_rate_distribution.Rd |only bifrost-0.2.0/bifrost/man/fit_regime_covariance_runs.Rd |only bifrost-0.2.0/bifrost/man/fit_regime_covariances.Rd |only bifrost-0.2.0/bifrost/man/fit_waiting_time_distribution.Rd |only bifrost-0.2.0/bifrost/man/generateViridisColorScale.Rd | 21 bifrost-0.2.0/bifrost/man/icTrajectory.Rd |only bifrost-0.2.0/bifrost/man/lineage_rates.Rd |only bifrost-0.2.0/bifrost/man/plot.icTrajectory.Rd |only bifrost-0.2.0/bifrost/man/plot.rateMap.Rd |only bifrost-0.2.0/bifrost/man/plot.rate_distribution_fit.Rd |only bifrost-0.2.0/bifrost/man/plot.regime_correlation_pca.Rd |only bifrost-0.2.0/bifrost/man/plot.regime_integration_relationships.Rd |only bifrost-0.2.0/bifrost/man/plot.regime_module_diagnostics.Rd |only bifrost-0.2.0/bifrost/man/plot.shift_magnitude_comparison.Rd |only bifrost-0.2.0/bifrost/man/plot.shift_magnitude_comparison_set.Rd |only bifrost-0.2.0/bifrost/man/plot.shift_magnitude_count_set.Rd |only bifrost-0.2.0/bifrost/man/plot.shift_magnitude_counts.Rd |only bifrost-0.2.0/bifrost/man/print.bifrost_search.Rd | 4 bifrost-0.2.0/bifrost/man/print.bifrost_search_tuning_grid.Rd |only bifrost-0.2.0/bifrost/man/print.bifrost_search_tuning_selection.Rd |only bifrost-0.2.0/bifrost/man/print.bifrost_shift_recovery_evaluation.Rd |only bifrost-0.2.0/bifrost/man/print.bifrost_simulation_study.Rd |only bifrost-0.2.0/bifrost/man/print.bifrost_simulation_template.Rd |only bifrost-0.2.0/bifrost/man/print.rateMap.Rd |only bifrost-0.2.0/bifrost/man/rateMap.Rd |only bifrost-0.2.0/bifrost/man/rateMapControl.Rd |only bifrost-0.2.0/bifrost/man/rateMapRateFlags.Rd |only bifrost-0.2.0/bifrost/man/rateMapView.Rd |only bifrost-0.2.0/bifrost/man/regime_correlation_pca.Rd |only bifrost-0.2.0/bifrost/man/regime_integration_pgls.Rd |only bifrost-0.2.0/bifrost/man/regime_integration_relationships.Rd |only bifrost-0.2.0/bifrost/man/regime_module_diagnostics.Rd |only bifrost-0.2.0/bifrost/man/runFalsePositiveSimulationStudy.Rd |only bifrost-0.2.0/bifrost/man/runSearchTuningGrid.Rd |only bifrost-0.2.0/bifrost/man/runShiftRecoverySimulationStudy.Rd |only bifrost-0.2.0/bifrost/man/searchOptimalConfiguration.Rd | 190 +- bifrost-0.2.0/bifrost/man/selectTunedSearchParameters.Rd |only bifrost-0.2.0/bifrost/man/shift_magnitude_counts.Rd |only bifrost-0.2.0/bifrost/man/shift_magnitude_groups.Rd |only bifrost-0.2.0/bifrost/man/shift_node_marks.Rd |only bifrost-0.2.0/bifrost/man/shift_transitions.Rd |only bifrost-0.2.0/bifrost/man/shift_waiting_times.Rd |only bifrost-0.2.0/bifrost/man/simulateNullDataset.Rd |only bifrost-0.2.0/bifrost/man/simulateShiftedDataset.Rd |only bifrost-0.2.0/bifrost/man/summarize_regime_covariance_runs.Rd |only bifrost-0.2.0/bifrost/man/summarize_regime_covariances.Rd |only bifrost-0.2.0/bifrost/tests/testthat/fixtures/search-characterization-baseline.rds |only bifrost-0.2.0/bifrost/tests/testthat/fixtures/simdata.RDS |binary bifrost-0.2.0/bifrost/tests/testthat/helper-avian-skeleton.R |only bifrost-0.2.0/bifrost/tests/testthat/helper-example-data.R |only bifrost-0.2.0/bifrost/tests/testthat/helper-search-characterization.R |only bifrost-0.2.0/bifrost/tests/testthat/helper-simulation-rng.R |only bifrost-0.2.0/bifrost/tests/testthat/helper-simulation-study-formula.R |only bifrost-0.2.0/bifrost/tests/testthat/helper-test-overrides.R |only bifrost-0.2.0/bifrost/tests/testthat/test-addShiftToModel.R | 316 +--- bifrost-0.2.0/bifrost/tests/testthat/test-compare-simulation-generators.R |only bifrost-0.2.0/bifrost/tests/testthat/test-covariance-validation-scale.R |only bifrost-0.2.0/bifrost/tests/testthat/test-createSimulationTemplate.R |only bifrost-0.2.0/bifrost/tests/testthat/test-evaluateShiftRecovery.R |only bifrost-0.2.0/bifrost/tests/testthat/test-example-data.R |only bifrost-0.2.0/bifrost/tests/testthat/test-fitMvglsAndExtractIC.formula.R |only bifrost-0.2.0/bifrost/tests/testthat/test-formula-intercept.R |only bifrost-0.2.0/bifrost/tests/testthat/test-generatePaintedTrees.R | 279 +-- bifrost-0.2.0/bifrost/tests/testthat/test-generateViridisColorScale.R | 35 bifrost-0.2.0/bifrost/tests/testthat/test-icTrajectory.R |only bifrost-0.2.0/bifrost/tests/testthat/test-lineage_rates.R |only bifrost-0.2.0/bifrost/tests/testthat/test-mvgls-functions.R | 406 +---- bifrost-0.2.0/bifrost/tests/testthat/test-normalizeMvglsFormulaCall.R |only bifrost-0.2.0/bifrost/tests/testthat/test-paintSubTree_removeShift.R | 286 +-- bifrost-0.2.0/bifrost/tests/testthat/test-paired-tuning-cache.R |only bifrost-0.2.0/bifrost/tests/testthat/test-paired-tuning-grid.R |only bifrost-0.2.0/bifrost/tests/testthat/test-print-bifrost_search.R | 6 bifrost-0.2.0/bifrost/tests/testthat/test-print-bifrost_simulation_study.R |only bifrost-0.2.0/bifrost/tests/testthat/test-print-bifrost_simulation_template.R |only bifrost-0.2.0/bifrost/tests/testthat/test-rate-map.R |only bifrost-0.2.0/bifrost/tests/testthat/test-recovery-f1.R |only bifrost-0.2.0/bifrost/tests/testthat/test-regime-integration.R |only bifrost-0.2.0/bifrost/tests/testthat/test-replicate-metrics.R |only bifrost-0.2.0/bifrost/tests/testthat/test-runFalsePositiveSimulationStudy.R |only bifrost-0.2.0/bifrost/tests/testthat/test-runSearchTuningGrid.R |only bifrost-0.2.0/bifrost/tests/testthat/test-runShiftRecoverySimulationStudy.R |only bifrost-0.2.0/bifrost/tests/testthat/test-search-baseline-output.R |only bifrost-0.2.0/bifrost/tests/testthat/test-search-characterization.R |only bifrost-0.2.0/bifrost/tests/testthat/test-search-progress-silent.R |only bifrost-0.2.0/bifrost/tests/testthat/test-search-progress.R |only bifrost-0.2.0/bifrost/tests/testthat/test-searchOptimalConfiguration.R | 788 ++++++++-- bifrost-0.2.0/bifrost/tests/testthat/test-selectTunedSearchParameters.R |only bifrost-0.2.0/bifrost/tests/testthat/test-serialized-artifacts.R |only bifrost-0.2.0/bifrost/tests/testthat/test-shift-distributions.R |only bifrost-0.2.0/bifrost/tests/testthat/test-simulateNullDataset.R |only bifrost-0.2.0/bifrost/tests/testthat/test-simulateShiftedDataset.R |only bifrost-0.2.0/bifrost/tests/testthat/test-simulation-covariance-helpers.R |only bifrost-0.2.0/bifrost/tests/testthat/test-simulation-formula-spec.R |only bifrost-0.2.0/bifrost/tests/testthat/test-simulation-helpers.R |only bifrost-0.2.0/bifrost/tests/testthat/test-simulation-terminology.R |only bifrost-0.2.0/bifrost/tests/testthat/test-simulation-vignette-cache.R |only bifrost-0.2.0/bifrost/tests/testthat/test-tuning-fitting-settings.R |only bifrost-0.2.0/bifrost/tests/testthat/test-vignette-html-widgets.R |only 150 files changed, 2454 insertions(+), 1668 deletions(-)
Title: Bayesian Power Prior Design for Survival Outcomes
Description: Bayesian power/type I error calculation and model fitting using
the power prior and the normalized power prior for time-to-event endpoints.
The proportional hazards model with piecewise constant hazard (piecewise exponential)
is implemented. The methodology and examples of
applying the package are detailed in <doi:10.32614/RJ-2026-009>.
The Bayesian clinical trial design methodology is described in
Chen et al. (2011) <doi:10.1111/j.1541-0420.2011.01561.x>,
and Psioda and Ibrahim (2019) <doi:10.1093/biostatistics/kxy009>.
The proportional hazards model with piecewise constant hazard is detailed in
Ibrahim et al. (2001) <doi:10.1007/978-1-4757-3447-8>.
Author: Yueqi Shen [aut, cre],
Matthew A. Psioda [aut],
Joseph G. Ibrahim [aut]
Maintainer: Yueqi Shen <angieshen6@gmail.com>
Diff between BayesPPDSurv versions 1.0.4 dated 2026-08-24 and 1.0.5 dated 2026-09-27
DESCRIPTION | 19 ++++++++++--------- MD5 | 2 +- 2 files changed, 11 insertions(+), 10 deletions(-)
Title: Tools for Parsing and Generating XML Within R and S-Plus
Description: Many approaches for both reading and
creating XML (and HTML) documents, both local
and accessible via HTTP or FTP. Also offers access to an
'XPath' "interpreter".
Author: CRAN Team [ctb] ,
Duncan Temple Lang [aut] ,
Tomas Kalibera [ctb],
Ivan Krylov [cre]
Maintainer: Ivan Krylov <ikrylov@disroot.org>
Diff between XML versions 3.99-0.24 dated 2026-08-21 and 3.99-0.25 dated 2026-09-27
ChangeLog | 5 +++++ DESCRIPTION | 6 +++--- MD5 | 9 +++++---- src/NodeGC.c | 3 +++ src/XMLTree.c | 45 +++++++++++++++++++++++++++++++++++++++++++++ tests/bugs.R |only 6 files changed, 61 insertions(+), 7 deletions(-)
Title: Lightweight Extension of the Base R Graphics System
Description: Lightweight extension of the base R graphics system, with support
for automatic legends, facets, themes, and various other enhancements.
Author: Grant McDermott [aut, cre] ,
Vincent Arel-Bundock [aut] ,
Achim Zeileis [aut] ,
Etienne Bacher [ctb],
Miura Meng [ctb]
Maintainer: Grant McDermott <contact@grantmcdermott.com>
Diff between tinyplot versions 0.7.0 dated 2026-07-03 and 0.8.0 dated 2026-09-27
DESCRIPTION | 19 MD5 | 178 +++---- NAMESPACE | 206 ++++---- NEWS.md | 862 +++++++++++++++++++++++++--------- R/align_layer.R | 26 - R/assertions.R | 162 +++++- R/by_aesthetics.R | 4 R/dodge.R | 15 R/environment.R | 3 R/facet.R | 1137 ++++++++++++++++++++++++++++++++++++++++----- R/flip.R | 5 R/legend.R | 128 ++++- R/legend_gradient.R | 50 - R/legend_multi.R | 3 R/lim.R | 80 +++ R/ordering_args.R |only R/record.R |only R/sanitize_axes.R | 47 + R/sanitize_datapoints.R | 14 R/sanitize_facet.R | 54 +- R/sanitize_ord.R |only R/sanitize_type.R | 26 - R/sanitize_xlevels.R |only R/sanitize_xylab.R | 8 R/setup_device.R | 6 R/singletons.R |only R/tinyAxis.R | 372 ++++++++++++++ R/tinylabel.R | 79 ++- R/tinyplot.R | 558 +++++++++++++++++++--- R/tinyplot.array.R |only R/tinyplot.data.frame.R | 9 R/tinyplot.matrix.R | 237 +++++++-- R/tinyplot.ts.R | 2 R/tinyplot_add.R | 50 + R/tinytheme.R | 96 +++ R/tpar.R | 140 ++++- R/type_abline.R | 140 +++-- R/type_area.R | 131 ++++- R/type_barplot.R | 316 ++++++++++-- R/type_density.R | 115 ++++ R/type_errorbar.R | 88 +++ R/type_glm.R | 2 R/type_heatmap.R |only R/type_hexbin.R |only R/type_histogram.R | 38 + R/type_hline.R | 57 -- R/type_jitter.R | 6 R/type_lines.R | 177 ++++++- R/type_lm.R | 2 R/type_loess.R | 92 +++ R/type_pointrange.R | 26 - R/type_points.R | 48 + R/type_ribbon.R | 142 +++++ R/type_ridge.R | 159 ++++-- R/type_sina.R |only R/type_spineplot.R | 166 +++++- R/type_summary.R | 41 - R/type_text.R | 32 - R/type_tile.R |only R/type_violin.R | 379 ++++++++++----- R/type_vline.R | 57 -- R/utils.R | 91 +++ R/zzz.R | 35 - man/build_legend_args.Rd | 4 man/build_legend_env.Rd | 5 man/draw_legend.Rd | 15 man/facet.Rd | 22 man/recordedtinyplot.Rd |only man/restore_plot_region.Rd |only man/tinyAxis.Rd | 48 + man/tinylabel.Rd | 33 + man/tinyplot-package.Rd | 1 man/tinyplot.Rd | 175 ++++++ man/tinyplot.array.Rd |only man/tinyplot.data.frame.Rd | 7 man/tinyplot.matrix.Rd | 37 + man/tinyplot.ts.Rd | 5 man/tinyplot_add.Rd | 55 +- man/tinytheme.Rd | 5 man/tinytheme_get.Rd |only man/tinytheme_register.Rd | 2 man/tpar.Rd | 14 man/type_abline.Rd | 15 man/type_barplot.Rd | 226 +++++++- man/type_density.Rd | 37 + man/type_errorbar.Rd | 93 +++ man/type_hexbin.Rd |only man/type_histogram.Rd | 8 man/type_lines.Rd | 76 ++- man/type_loess.Rd | 50 + man/type_points.Rd | 36 + man/type_ribbon.Rd | 145 +++++ man/type_ridge.Rd | 53 +- man/type_spineplot.Rd | 51 +- man/type_summary.Rd | 36 + man/type_text.Rd | 10 man/type_tile.Rd |only man/type_violin.Rd | 113 +++- 98 files changed, 6874 insertions(+), 1419 deletions(-)
Title: Vector Look-Ups and Safer Sampling
Description: A collection of utility functions that facilitate looking up
vector values from a lookup table, annotate values in a table for
clearer viewing, and support a safer approach to vector sampling,
sequence generation, and aggregation. Also included is a family of
argument checks which return their input so that they compose
nicely in a pipe.
Author: Magnus Thor Torfason [aut, cre]
Maintainer: Magnus Thor Torfason <m@zulutime.net>
Diff between zmisc versions 0.2.3 dated 2023-08-22 and 0.3.0 dated 2026-09-27
zmisc-0.2.3/zmisc/build/build_and_release_process.R |only zmisc-0.2.3/zmisc/inst/doc/zmisc.R |only zmisc-0.2.3/zmisc/inst/doc/zmisc.Rmd |only zmisc-0.2.3/zmisc/inst/doc/zmisc.html |only zmisc-0.2.3/zmisc/man/ll_assert_labelled.Rd |only zmisc-0.2.3/zmisc/man/zmisc.Rd |only zmisc-0.2.3/zmisc/tests/testthat/test-zmisc.R |only zmisc-0.2.3/zmisc/vignettes/utils_knitr.R |only zmisc-0.2.3/zmisc/vignettes/utils_roxygen.R |only zmisc-0.2.3/zmisc/vignettes/zmisc.Rmd |only zmisc-0.3.0/zmisc/DESCRIPTION | 29 - zmisc-0.3.0/zmisc/LICENSE | 4 zmisc-0.3.0/zmisc/MD5 | 110 ++-- zmisc-0.3.0/zmisc/NAMESPACE | 81 +++ zmisc-0.3.0/zmisc/NEWS.md | 49 ++ zmisc-0.3.0/zmisc/R/asciify.R |only zmisc-0.3.0/zmisc/R/chk-0-docs.R |only zmisc-0.3.0/zmisc/R/chk-1-atomic.R |only zmisc-0.3.0/zmisc/R/chk-2-composite.R |only zmisc-0.3.0/zmisc/R/chk-3-other.R |only zmisc-0.3.0/zmisc/R/chk-4-other-any.R |only zmisc-0.3.0/zmisc/R/chk-9-support.R |only zmisc-0.3.0/zmisc/R/glue.R |only zmisc-0.3.0/zmisc/R/import_all_with_prefix.R |only zmisc-0.3.0/zmisc/R/labelled_light.R | 36 - zmisc-0.3.0/zmisc/R/lookup.R | 185 ++++--- zmisc-0.3.0/zmisc/R/notate.R | 40 + zmisc-0.3.0/zmisc/R/yencode.R |only zmisc-0.3.0/zmisc/R/zample.R | 42 - zmisc-0.3.0/zmisc/R/zeq.R | 32 - zmisc-0.3.0/zmisc/R/zingle.R | 131 +++-- zmisc-0.3.0/zmisc/R/zmisc-package.R | 16 zmisc-0.3.0/zmisc/R/zmisc-utils.R | 9 zmisc-0.3.0/zmisc/README.md | 316 +++++-------- zmisc-0.3.0/zmisc/build/vignette.rds |binary zmisc-0.3.0/zmisc/inst/WORDLIST | 24 zmisc-0.3.0/zmisc/inst/doc/chk.R |only zmisc-0.3.0/zmisc/inst/doc/chk.Rmd |only zmisc-0.3.0/zmisc/inst/doc/chk.html |only zmisc-0.3.0/zmisc/man/asciify.Rd |only zmisc-0.3.0/zmisc/man/chk_atomic.Rd |only zmisc-0.3.0/zmisc/man/chk_composite.Rd |only zmisc-0.3.0/zmisc/man/chk_other.Rd |only zmisc-0.3.0/zmisc/man/dot-yencode_map.Rd |only zmisc-0.3.0/zmisc/man/glue_vector.Rd |only zmisc-0.3.0/zmisc/man/import_all_chk.Rd |only zmisc-0.3.0/zmisc/man/ll_chk_labelled.Rd |only zmisc-0.3.0/zmisc/man/ll_labelled.Rd | 12 zmisc-0.3.0/zmisc/man/ll_to_character.Rd | 12 zmisc-0.3.0/zmisc/man/ll_val_labels.Rd | 12 zmisc-0.3.0/zmisc/man/ll_var_label.Rd | 12 zmisc-0.3.0/zmisc/man/lookup.Rd | 78 +-- zmisc-0.3.0/zmisc/man/notate.Rd | 22 zmisc-0.3.0/zmisc/man/reexports.Rd |only zmisc-0.3.0/zmisc/man/threadbare.Rd | 14 zmisc-0.3.0/zmisc/man/yencode.Rd |only zmisc-0.3.0/zmisc/man/zample.Rd | 21 zmisc-0.3.0/zmisc/man/zeq.Rd | 10 zmisc-0.3.0/zmisc/man/zingle.Rd | 76 +-- zmisc-0.3.0/zmisc/man/zmisc-package.Rd |only zmisc-0.3.0/zmisc/tests/testthat/_snaps |only zmisc-0.3.0/zmisc/tests/testthat/test-asciify.R |only zmisc-0.3.0/zmisc/tests/testthat/test-assertions.R |only zmisc-0.3.0/zmisc/tests/testthat/test-chk-any.R |only zmisc-0.3.0/zmisc/tests/testthat/test-chk-generated.R |only zmisc-0.3.0/zmisc/tests/testthat/test-chk.R |only zmisc-0.3.0/zmisc/tests/testthat/test-glue.R |only zmisc-0.3.0/zmisc/tests/testthat/test-labelled_light.R | 25 - zmisc-0.3.0/zmisc/tests/testthat/test-lookup.R | 196 +++++++- zmisc-0.3.0/zmisc/tests/testthat/test-notate.R | 10 zmisc-0.3.0/zmisc/tests/testthat/test-utils_ddply_helper.R | 26 - zmisc-0.3.0/zmisc/tests/testthat/test-wrap_error.R |only zmisc-0.3.0/zmisc/tests/testthat/test-yencode.R |only zmisc-0.3.0/zmisc/tests/testthat/test-zample.R |only zmisc-0.3.0/zmisc/tests/testthat/test-zeq.R |only zmisc-0.3.0/zmisc/tests/testthat/test-zingle.R |only zmisc-0.3.0/zmisc/tests/testthat/test-zzz_built_files.R |only zmisc-0.3.0/zmisc/tests/testthat/test-zzz_spelling.R |only zmisc-0.3.0/zmisc/tests/testthat/xtra-test-zingle.R |only zmisc-0.3.0/zmisc/vignettes/chk.Rmd |only zmisc-0.3.0/zmisc/vignettes/zmisc.R |only zmisc-0.3.0/zmisc/vignettes/zmisc.html |only 82 files changed, 1022 insertions(+), 608 deletions(-)
Title: Sequential Comparison of Probabilistic Forecasts
Description: Implements tools for the anytime-valid sequential comparison of
two or more probabilistic forecasters. Provides binary, categorical, and
quantile scoring rules, together with finite-sample confidence sequences
and e-processes following Choe and Ramdas (2024)
<doi:10.1287/opre.2021.0792>. Extends to multi-model evaluation via
Sequential Model Confidence Sets, following Arnold, Gavrilopoulos, Schulz,
and Ziegel (2026) <doi:10.1093/jrsssb/qkag066>, using closure principles,
joint confidence sequences, and accelerated closed-testing. Adaptive
betting fractions for the strong null (aGRAPA and ONS-m) are adapted from
Waudby-Smith and Ramdas (2024) <doi:10.1093/jrsssb/qkad009>. Also includes
Winkler-score comparisons, lag handling, and predictable-bound betting
e-processes.
Author: Akbar Alasgarli [aut, cre]
Maintainer: Akbar Alasgarli <alasgarliakbar@gmail.com>
Diff between seqcomp versions 0.1.0 dated 2026-06-30 and 0.3.0 dated 2026-09-27
DESCRIPTION | 25 + MD5 | 98 ++++-- NAMESPACE | 81 +++-- NEWS.md | 48 +++ R/compare_forecasts.R | 2 R/confidence_sequences.R | 27 + R/etests.R | 473 +++++++++++++++++++++++++++++++-- R/lag_handling.R | 8 R/predictable_bounds.R | 8 R/scores.R | 30 +- R/seqcomp-package.R | 29 +- R/smcs.R |only R/smcs_compare.R |only R/utils.R | 115 ++++++-- R/winkler.R | 16 - README.md | 102 +++++-- build/vignette.rds |binary inst/CITATION | 43 ++- inst/doc/adaptive_betting.R |only inst/doc/adaptive_betting.Rmd |only inst/doc/adaptive_betting.html |only inst/doc/seqcomp.Rmd | 17 - inst/doc/seqcomp.html | 76 ++--- inst/doc/smcs.R |only inst/doc/smcs.Rmd |only inst/doc/smcs.html |only man/build_agrapa_betting_array.Rd |only man/build_ons_betting_array.Rd |only man/build_quantile_betting_arrays.Rd |only man/calibrate_p_to_e.Rd | 2 man/cs_asymptotic.Rd | 2 man/cs_bernstein.Rd | 4 man/cs_hoeffding.Rd | 4 man/eprocess.Rd | 175 ++++++------ man/eprocess_betting.Rd |only man/eprocess_lag.Rd | 2 man/eprocess_predictable.Rd | 2 man/figures/README-plot-1.png |binary man/lambda_betting_agrapa.Rd |only man/lambda_betting_ons.Rd |only man/lambda_betting_quantile.Rd |only man/ps_boundary.Rd | 4 man/rho_from_vopt.Rd | 2 man/seqcomp-package.Rd | 157 ++++++---- man/smcs_compare.Rd |only man/smcs_strong.Rd |only man/smcs_weak.Rd |only man/split_streams.Rd | 2 man/tick_loss.Rd | 14 man/vovk_wang_merge.Rd |only man/winkler_compare.Rd | 2 man/winkler_cs.Rd | 2 man/winkler_etest.Rd | 2 man/winkler_score.Rd | 6 tests/testthat/test_eprocess_betting.R |only tests/testthat/test_scores.R | 6 tests/testthat/test_smcs.R |only tests/testthat/test_smcs_compare.R |only tests/testthat/test_utils.R | 40 ++ vignettes/adaptive_betting.Rmd |only vignettes/seqcomp.Rmd | 17 - vignettes/smcs.Rmd |only 62 files changed, 1208 insertions(+), 435 deletions(-)
Title: Robust Latent Profile Analysis
Description: Provides a comprehensive toolset for estimating Latent Profile
Analysis (LPA) models that are robust to multivariate outliers and missing
data. By integrating a high-performance 'C++' engine via 'RcppArmadillo',
it reliably extracts latent profiles using both Expectation-Maximization (EM)
and Markov Chain Monte Carlo (MCMC) Bayesian estimation. Robustness is
obtained either by Huber-type down-weighting or by mixtures of multivariate
t distributions (a likelihood-based robust model, see Peel and McLachlan
(2000) <doi:10.1023/A:1008981510081>). Missing data are handled by full
information maximum likelihood with the exact EM treatment of incomplete
observations (data augmentation in the MCMC engine). The EM engine also
supports LASSO regularization with k-fold cross-validation for penalty
tuning; the MCMC engine uses a Bayesian Lasso with Laplace priors, multiple
chains, Gelman-Rubin/effective sample size diagnostics and the widely
applicable information criterion. It supports six [...truncated...]
Author: Valerio Riccardo Aquila [aut, cre]
Maintainer: Valerio Riccardo Aquila <valerio_aquila@hotmail.it>
Diff between RobustLPA versions 1.0.0 dated 2026-08-20 and 1.1.0 dated 2026-09-27
DESCRIPTION | 62 - MD5 | 96 +- NAMESPACE | 7 NEWS.md | 172 +++ R/RcppExports.R | 44 R/RobustLPA-package.R | 26 R/bch_robust.R | 110 +- R/blrt_robust.R | 371 ++++---- R/data.R | 60 + R/estimate_profiles_robust.R | 304 +++--- R/gmm_companions.R |only R/gmm_internal.R |only R/gmm_methods.R |only R/internal_utils.R |only R/label_utils.R | 133 +-- R/mcmc_diagnostics.R | 52 - R/model_helpers.R |only R/parallel_utils.R | 127 +- R/plot_mcmc_chains.R | 51 - R/print_summary_robust_lpa.R | 49 - R/robust_gmm.R |only R/robust_lpa.R | 1527 ++++++++++++++++------------------ R/robust_m_step.R | 222 ++--- build/partial.rdb |binary build/vignette.rds |binary data/neuro_long.rda |only inst/doc/RobustLPA.R | 31 inst/doc/RobustLPA.Rmd | 121 +- inst/doc/RobustLPA.html | 590 +++++++------ inst/doc/robust-growth-mixture.R |only inst/doc/robust-growth-mixture.Rmd |only inst/doc/robust-growth-mixture.html |only inst/scripts |only man/RobustLPA-package.Rd | 2 man/bch_robust.Rd | 55 - man/blrt_gmm_robust.Rd |only man/blrt_robust.Rd | 17 man/estimate_gmm_robust.Rd |only man/estimate_profiles_robust.Rd | 41 man/neuro_data.Rd | 11 man/neuro_long.Rd |only man/plot_mcmc_chains.Rd | 14 man/plot_robust_gmm.Rd |only man/print.robust_gmm.Rd |only man/print.robust_lpa.Rd | 2 man/print.summary.robust_gmm.Rd |only man/robust_gmm.Rd |only man/robust_lpa.Rd | 362 ++++---- man/robust_m_step.Rd | 137 ++- man/summary.robust_gmm.Rd |only man/summary.robust_lpa.Rd | 9 src/RcppExports.cpp | 242 +++-- src/gmm_engine.cpp |only src/rlpa_utils.h |only src/robust_engine.cpp | 1591 +++++++++++++++++------------------- tests |only vignettes/RobustLPA.Rmd | 121 +- vignettes/robust-growth-mixture.Rmd |only 58 files changed, 3689 insertions(+), 3070 deletions(-)
Title: Hotspot Detection of Point Events on a Linear Network
Description: Detection of hotspots of point events on a linear network as proposed by Mrkvička et al. (2025) <doi:10.2139/ssrn.5337003> using the R package 'GET', see Myllymäki and Mrkvička (2024) <doi:10.18637/jss.v111.i03>.
Author: Mari Myllymaeki [aut, cre] ,
Michal Konopa [aut],
Tomas Mrkvicka [aut],
Mikko Kuronen [ctb]
Maintainer: Mari Myllymaeki <mari.myllymaki@luke.fi>
Diff between pphotspot versions 0.1-2 dated 2026-07-28 and 0.1-3 dated 2026-09-27
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- R/geometry_to_segments.r |only R/rMatClustlpp.r | 22 ++++++++++++++++------ inst/doc/HotSpots.pdf |binary 5 files changed, 24 insertions(+), 13 deletions(-)
Title: Inferential Statistics
Description: Computation of various confidence intervals (Altman et al. (2000), ISBN:978-0-727-91375-3; Hedderich and Sachs (2018), ISBN:978-3-662-56657-2) including bootstrapped versions (Davison and Hinkley (1997), ISBN:978-0-511-80284-3) as well as Xiao (Xiao (2018), <doi:10.17654/TS054010021>), Hsu (Hedderich and Sachs (2018), ISBN:978-3-662-56657-2), permutation (Janssen (1997), <doi:10.1016/S0167-7152(97)00043-6>), bootstrap (Davison and Hinkley (1997), ISBN:978-0-511-80284-3), intersection-union (Sozu et al. (2015), ISBN:978-3-319-22005-5) and multiple imputation (Barnard and Rubin (1999), <doi:10.1093/biomet/86.4.948>) t-test; furthermore, computation of intersection-union z-test as well as multiple imputation Wilcoxon tests. Graphical visualizations: volcano plot, Bland-Altman plots (Bland and Altman (1986), <doi:10.1016/S0140-6736(86)90837-8>; Shieh (2018), <doi:10.1186/s12874-018-0505-y>), mean difference plot (Boehning et al. (2008), <doi:10.1177/0962280 [...truncated...]
Author: Matthias Kohl [aut, cre]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between MKinfer versions 1.3 dated 2025-12-15 and 1.4 dated 2026-09-27
DESCRIPTION | 14 MD5 | 52 - NAMESPACE | 22 NEWS | 19 R/corCI.R |only R/dgt.R |only R/h0plot.R | 25 R/hsu.t.test.R | 1 R/normDiffCI.R | 47 + R/pairwise.ext.t.test.R | 40 - R/pairwise.wilcox.exact.R | 4 R/perm.t.test.R | 303 ++++++++- R/sysdata.rda |only R/xiao.t.test.R |only build/partial.rdb |binary build/vignette.rds |binary data/fingsys.RData |binary inst/doc/MKinfer.R | 115 ++- inst/doc/MKinfer.Rmd | 158 ++++ inst/doc/MKinfer.html | 1441 ++++++++++++++++++++++++++++----------------- man/boot.t.test.Rd | 17 man/dgt.Rd |only man/hsu.t.test.Rd | 24 man/mi.wilcox.test.Rd | 6 man/normDiffCI.Rd | 24 man/pairwise.ext.t.test.Rd | 8 man/perm.t.test.Rd | 77 ++ man/xiao.t.test.Rd |only vignettes/MKinfer.Rmd | 158 ++++ vignettes/MKinfer.bib | 24 30 files changed, 1842 insertions(+), 737 deletions(-)
Title: Log Fold Change Distribution Tools for Working with Ratios of
Counts
Description: Ratios of count data such as obtained from RNA-seq are modelled
using Bayesian statistics to derive posteriors for effects sizes. This
approach is described in Erhard & Zimmer (2015) <doi:10.1093/nar/gkv696>
and Erhard (2018) <doi:10.1093/bioinformatics/bty471>.
Author: Florian Erhard [aut, cre]
Maintainer: Florian Erhard <Florian.Erhard@informatik.uni-regensburg.de>
Diff between lfc versions 0.2.3 dated 2023-04-19 and 0.2.4 dated 2026-09-27
DESCRIPTION | 14 ++++++++---- MD5 | 6 ++--- build/vignette.rds |binary inst/doc/lfc_vignette.html | 50 ++++++++++++++++++++++----------------------- 4 files changed, 37 insertions(+), 33 deletions(-)
Title: Discover, Access, and Import Global Light Commons Data Packages
Description: Discovers Global Light Commons data packages through their
registry, opens immutable passing revisions, and provides searchable
inventories of package metadata. Selected metadata and measurement files
can be downloaded or imported with metadata-defined columns, types, factor
levels, date-time values, and time zones. 'Git Large File Storage' objects
are resolved without requiring an external 'Git LFS' installation, and
imported file groups can be explicitly collected into data suitable for
personal light exposure analysis workflows. An included 'shiny' application
supports interactive discovery, inspection, selection, preview, and
reproducible handoff to 'R'.
Author: Johannes Zauner [aut, cre, cph] ,
Salma M. Thalji [aut, cph] ,
Manuel Spitschan [aut, cph]
Maintainer: Johannes Zauner <johannes.zauner@tum.de>
Diff between glcdp versions 1.0.0 dated 2026-08-06 and 1.1.0 dated 2026-09-27
DESCRIPTION | 6 MD5 | 46 - NAMESPACE | 4 NEWS.md | 23 R/collect.R | 160 ++++ R/collection-compatibility.R |only R/collection-plan-metadata.R |only R/collection-plan.R |only R/collection-refine.R |only R/explore-selection.R | 820 ++++++++++++++++--------- R/read.R | 47 + R/registry.R | 2 README.md | 3 inst/doc/glcdp.R | 2 inst/doc/glcdp.Rmd | 4 inst/doc/glcdp.html | 5 man/glc_collect.Rd | 24 man/glc_collection_plan.Rd |only man/glc_collection_refine.Rd |only man/glc_read.Rd | 11 tests/testthat/test-collection-compatibility.R |only tests/testthat/test-collection-plan-metadata.R |only tests/testthat/test-collection-plan.R |only tests/testthat/test-collection-refine.R |only tests/testthat/test-explore-selection.R | 210 ++++++ tests/testthat/test-live.R | 11 tests/testthat/test-read-collect.R | 99 ++- tests/testthat/test-registry.R | 7 vignettes/glcdp.Rmd | 4 29 files changed, 1138 insertions(+), 350 deletions(-)
Title: Work with 'BIDS' (Brain Imaging Data Structure) Projects
Description: Tools for working with 'BIDS' (Brain Imaging Data Structure)
formatted neuroimaging datasets. The package provides functionality for
reading and querying 'BIDS'-compliant projects, creating mock 'BIDS'
datasets for testing, and extracting preprocessed data from 'fMRIPrep'
derivatives. It supports searching and filtering 'BIDS' files by various
entities such as subject, session, task, and run to streamline
neuroimaging data workflows. See Gorgolewski et al. (2016)
<doi:10.1038/sdata.2016.44> for the 'BIDS' specification.
Author: Bradley Buchsbaum [aut, cre]
Maintainer: Bradley Buchsbaum <brad.buchsbaum@gmail.com>
Diff between bidser versions 0.5.0 dated 2026-07-06 and 0.5.2 dated 2026-09-27
DESCRIPTION | 14 +- MD5 | 53 ++++---- NEWS.md | 27 ++++ R/all_generic.R | 22 +++ R/bids.R | 7 - R/events.R | 70 ++++++++++- R/mock_bids.R | 10 - R/pack_bids.R | 2 R/plot_bids.R | 62 +++++---- R/query.R | 183 +++++++++++++++++++++++------ inst/doc/confounds-and-variables.html | 4 inst/doc/derivatives.html | 4 inst/doc/mock-bids.html | 2 inst/doc/quickstart.R | 3 inst/doc/quickstart.Rmd | 3 inst/doc/quickstart.html | 6 man/bids_entities.Rd | 3 man/dataset_name.Rd | 12 + man/event_files-method.Rd | 4 man/get_metadata.Rd | 10 + tests/testthat/test_coverage_target.R |only tests/testthat/test_coverage_target2.R |only tests/testthat/test_coverage_target3.R |only tests/testthat/test_coverage_target4.R |only tests/testthat/test_coverage_target5.R |only tests/testthat/test_event_inheritance.R |only tests/testthat/test_lna_extension.R |only tests/testthat/test_metadata_inheritance.R | 38 ++++++ tests/testthat/test_mock_bids.R | 22 +++ tests/testthat/test_vignette_resilience.R |only vignettes/albers-header.html |only vignettes/quickstart.Rmd | 3 32 files changed, 443 insertions(+), 121 deletions(-)
Title: Minimalist Theme and Vignette Kit for 'pkgdown' and R Markdown
Description: Provides a minimalist 'ggplot2' theme, colour scales, and
'pkgdown' template built around a curated colour palette system
inspired by Josef Albers' colour theory
(Albers (1963, ISBN:978-0-300-17935-4) "Interaction of Color").
Includes helpers to apply consistent theming to 'ggplot2' plots, 'gt'
tables, and 'bslib' Bootstrap 5 sites, along with one-command setup
functions for adopting the style across an R package.
Author: Bradley R. Buchsbaum [aut, cre]
Maintainer: Bradley R. Buchsbaum <brad.buchsbaum@gmail.com>
Diff between albersdown versions 2.0.0 dated 2026-07-05 and 2.1.0 dated 2026-09-27
albersdown-2.0.0/albersdown/inst/doc/design-notes.R |only albersdown-2.0.0/albersdown/inst/doc/design-notes.Rmd |only albersdown-2.0.0/albersdown/inst/doc/design-notes.html |only albersdown-2.0.0/albersdown/inst/doc/proof-ochre-structural.R |only albersdown-2.0.0/albersdown/inst/doc/proof-ochre-structural.Rmd |only albersdown-2.0.0/albersdown/inst/doc/proof-ochre-structural.html |only albersdown-2.0.0/albersdown/inst/doc/proof-teal-study.R |only albersdown-2.0.0/albersdown/inst/doc/proof-teal-study.Rmd |only albersdown-2.0.0/albersdown/inst/doc/proof-teal-study.html |only albersdown-2.0.0/albersdown/inst/doc/theme-lab.R |only albersdown-2.0.0/albersdown/inst/doc/theme-lab.Rmd |only albersdown-2.0.0/albersdown/inst/doc/theme-lab.html |only albersdown-2.0.0/albersdown/inst/doc/theme-showcase.R |only albersdown-2.0.0/albersdown/inst/doc/theme-showcase.Rmd |only albersdown-2.0.0/albersdown/inst/doc/theme-showcase.html |only albersdown-2.0.0/albersdown/inst/rmarkdown/templates/albers_vignette/skeleton/albers-header.html |only albersdown-2.0.0/albersdown/inst/rmarkdown/templates/albers_vignette/skeleton/albers.css |only albersdown-2.0.0/albersdown/inst/rmarkdown/templates/albers_vignette/skeleton/fonts |only albersdown-2.0.0/albersdown/vignettes/albers-header.html |only albersdown-2.0.0/albersdown/vignettes/albers.css |only albersdown-2.0.0/albersdown/vignettes/albers.js |only albersdown-2.0.0/albersdown/vignettes/design-notes.Rmd |only albersdown-2.0.0/albersdown/vignettes/fonts |only albersdown-2.0.0/albersdown/vignettes/proof-ochre-structural.Rmd |only albersdown-2.0.0/albersdown/vignettes/proof-teal-study.Rmd |only albersdown-2.0.0/albersdown/vignettes/theme-lab.Rmd |only albersdown-2.0.0/albersdown/vignettes/theme-showcase.Rmd |only albersdown-2.1.0/albersdown/DESCRIPTION | 12 albersdown-2.1.0/albersdown/MD5 | 143 albersdown-2.1.0/albersdown/NAMESPACE | 2 albersdown-2.1.0/albersdown/NEWS.md |only albersdown-2.1.0/albersdown/R/albers_vignette.R |only albersdown-2.1.0/albersdown/R/bs_theme.R | 2 albersdown-2.1.0/albersdown/R/gt_albers.R | 2 albersdown-2.1.0/albersdown/R/migrate_albersdown.R | 24 albersdown-2.1.0/albersdown/R/theme_albers.R | 296 albersdown-2.1.0/albersdown/R/use_albers.R | 2 albersdown-2.1.0/albersdown/R/use_albersdown.R | 378 albersdown-2.1.0/albersdown/R/use_albersdown_format.R |only albersdown-2.1.0/albersdown/build/vignette.rds |binary albersdown-2.1.0/albersdown/inst/doc/getting-started.R | 66 albersdown-2.1.0/albersdown/inst/doc/getting-started.Rmd | 177 albersdown-2.1.0/albersdown/inst/doc/getting-started.html | 4179 +++++----- albersdown-2.1.0/albersdown/inst/doc/interaction.R | 40 albersdown-2.1.0/albersdown/inst/doc/interaction.Rmd | 44 albersdown-2.1.0/albersdown/inst/doc/interaction.html | 4009 +++++---- albersdown-2.1.0/albersdown/inst/fonts/LICENSE | 7 albersdown-2.1.0/albersdown/inst/fonts/familjen-grotesk.woff2 |binary albersdown-2.1.0/albersdown/inst/fonts/hanken-grotesk-italic.woff2 |only albersdown-2.1.0/albersdown/inst/fonts/hanken-grotesk.woff2 |binary albersdown-2.1.0/albersdown/inst/fonts/jetbrains-mono.woff2 |binary albersdown-2.1.0/albersdown/inst/fonts/newsreader-italic.woff2 |binary albersdown-2.1.0/albersdown/inst/fonts/newsreader.woff2 |binary albersdown-2.1.0/albersdown/inst/fonts/space-grotesk.woff2 |binary albersdown-2.1.0/albersdown/inst/fonts/spline-sans-mono.woff2 |binary albersdown-2.1.0/albersdown/inst/format |only albersdown-2.1.0/albersdown/inst/pkgdown/assets/albers.css | 3247 ++++++- albersdown-2.1.0/albersdown/inst/pkgdown/assets/albers.js | 2831 ++++++ albersdown-2.1.0/albersdown/inst/pkgdown/assets/fonts/familjen-grotesk.woff2 |binary albersdown-2.1.0/albersdown/inst/pkgdown/assets/fonts/hanken-grotesk-italic.woff2 |only albersdown-2.1.0/albersdown/inst/pkgdown/assets/fonts/hanken-grotesk.woff2 |binary albersdown-2.1.0/albersdown/inst/pkgdown/assets/fonts/jetbrains-mono.woff2 |binary albersdown-2.1.0/albersdown/inst/pkgdown/assets/fonts/newsreader-italic.woff2 |binary albersdown-2.1.0/albersdown/inst/pkgdown/assets/fonts/newsreader.woff2 |binary albersdown-2.1.0/albersdown/inst/pkgdown/assets/fonts/space-grotesk.woff2 |binary albersdown-2.1.0/albersdown/inst/pkgdown/assets/fonts/spline-sans-mono.woff2 |binary albersdown-2.1.0/albersdown/inst/pkgdown/templates/in-header.html |only albersdown-2.1.0/albersdown/inst/rmarkdown/templates/albers_vignette/skeleton/skeleton.Rmd | 115 albersdown-2.1.0/albersdown/inst/tokens/albers-tokens.yml | 334 albersdown-2.1.0/albersdown/man/albers_discrete.Rd |only albersdown-2.1.0/albersdown/man/albers_vignette.Rd |only albersdown-2.1.0/albersdown/man/dot-preset_colors.Rd | 8 albersdown-2.1.0/albersdown/man/figures |only albersdown-2.1.0/albersdown/man/migrate_albersdown.Rd | 13 albersdown-2.1.0/albersdown/man/scale_color_albers.Rd | 25 albersdown-2.1.0/albersdown/man/theme_albers.Rd | 15 albersdown-2.1.0/albersdown/man/theme_albers_void.Rd | 3 albersdown-2.1.0/albersdown/man/use_albersdown.Rd | 88 albersdown-2.1.0/albersdown/tests/testthat/test-albers-vignette.R |only albersdown-2.1.0/albersdown/tests/testthat/test-midnight.R |only albersdown-2.1.0/albersdown/tests/testthat/test-migrate-albersdown.R | 19 albersdown-2.1.0/albersdown/tests/testthat/test-phone-figures.R |only albersdown-2.1.0/albersdown/tests/testthat/test-retrofit-format.R |only albersdown-2.1.0/albersdown/vignettes/getting-started.Rmd | 177 albersdown-2.1.0/albersdown/vignettes/interaction.Rmd | 44 85 files changed, 11369 insertions(+), 4933 deletions(-)
Title: Interface to 'TA-Lib' for Technical Analysis and Candlestick
Patterns
Description: Interface to the 'TA-Lib' (Technical Analysis Library) 'C'
library, providing access to 150+ indicators (e.g. Average Directional
Movement Index (ADX), Moving Average Convergence Divergence (MACD),
Relative Strength Index (RSI), Stochastic Oscillator, Bollinger Bands),
candlestick pattern recognition, and rolling-window utilities. Core
computations are implemented in 'C' for fast Open-High-Low-Close-Volume
(OHLCV) time-series feature engineering and rule-based signal
generation, with optional interactive visualization via 'plotly'.
Author: Serkan Korkmaz [cre, aut, cph] ,
Mario Fortier [cph] )
Maintainer: Serkan Korkmaz <serkor1@duck.com>
Diff between talib versions 0.9-2 dated 2026-05-10 and 0.9-3 dated 2026-09-27
talib-0.9-2/talib/R/ta_ROC.R |only talib-0.9-2/talib/man/figures/README-charting-1.png |only talib-0.9-2/talib/man/figures/README-combined-1.png |only talib-0.9-2/talib/man/figures/README-ggplot2-1.png |only talib-0.9-2/talib/man/figures/README-hero-1.png |only talib-0.9-2/talib/man/figures/logo.png |only talib-0.9-2/talib/man/rate_of_change.Rd |only talib-0.9-2/talib/man/rolling_max.Rd |only talib-0.9-2/talib/man/rolling_min.Rd |only talib-0.9-2/talib/src/MAType.h |only talib-0.9-2/talib/src/api.h |only talib-0.9-2/talib/src/container.h |only talib-0.9-2/talib/src/dataframe.c |only talib-0.9-2/talib/src/lib.c |only talib-0.9-2/talib/src/lib.h |only talib-0.9-2/talib/src/na.h |only talib-0.9-2/talib/src/ta-lib/src/ta_abstract/ta_java_defs.h |only talib-0.9-2/talib/src/ta-lib/src/ta_abstract/templates |only talib-0.9-2/talib/src/ta-lib/src/tools/gen_code |only talib-0.9-2/talib/src/ta_ACCBANDS.c |only talib-0.9-2/talib/src/ta_AD.c |only talib-0.9-2/talib/src/ta_ADOSC.c |only talib-0.9-2/talib/src/ta_ADX.c |only talib-0.9-2/talib/src/ta_ADXR.c |only talib-0.9-2/talib/src/ta_APO.c |only talib-0.9-2/talib/src/ta_AROON.c |only talib-0.9-2/talib/src/ta_AROONOSC.c |only talib-0.9-2/talib/src/ta_ATR.c |only talib-0.9-2/talib/src/ta_AVGPRICE.c |only talib-0.9-2/talib/src/ta_BBANDS.c |only talib-0.9-2/talib/src/ta_BETA.c |only talib-0.9-2/talib/src/ta_BOP.c |only talib-0.9-2/talib/src/ta_CCI.c |only talib-0.9-2/talib/src/ta_CDL2CROWS.c |only talib-0.9-2/talib/src/ta_CDL3BLACKCROWS.c |only talib-0.9-2/talib/src/ta_CDL3INSIDE.c |only talib-0.9-2/talib/src/ta_CDL3LINESTRIKE.c |only talib-0.9-2/talib/src/ta_CDL3OUTSIDE.c |only talib-0.9-2/talib/src/ta_CDL3STARSINSOUTH.c |only talib-0.9-2/talib/src/ta_CDL3WHITESOLDIERS.c |only talib-0.9-2/talib/src/ta_CDLABANDONEDBABY.c |only talib-0.9-2/talib/src/ta_CDLADVANCEBLOCK.c |only talib-0.9-2/talib/src/ta_CDLBELTHOLD.c |only talib-0.9-2/talib/src/ta_CDLBREAKAWAY.c |only talib-0.9-2/talib/src/ta_CDLCLOSINGMARUBOZU.c |only talib-0.9-2/talib/src/ta_CDLCONCEALBABYSWALL.c |only talib-0.9-2/talib/src/ta_CDLCOUNTERATTACK.c |only talib-0.9-2/talib/src/ta_CDLDARKCLOUDCOVER.c |only talib-0.9-2/talib/src/ta_CDLDOJI.c |only talib-0.9-2/talib/src/ta_CDLDOJISTAR.c |only talib-0.9-2/talib/src/ta_CDLDRAGONFLYDOJI.c |only talib-0.9-2/talib/src/ta_CDLENGULFING.c |only talib-0.9-2/talib/src/ta_CDLEVENINGDOJISTAR.c |only talib-0.9-2/talib/src/ta_CDLEVENINGSTAR.c |only talib-0.9-2/talib/src/ta_CDLGAPSIDESIDEWHITE.c |only talib-0.9-2/talib/src/ta_CDLGRAVESTONEDOJI.c |only talib-0.9-2/talib/src/ta_CDLHAMMER.c |only talib-0.9-2/talib/src/ta_CDLHANGINGMAN.c |only talib-0.9-2/talib/src/ta_CDLHARAMI.c |only talib-0.9-2/talib/src/ta_CDLHARAMICROSS.c |only talib-0.9-2/talib/src/ta_CDLHIGHWAVE.c |only talib-0.9-2/talib/src/ta_CDLHIKKAKE.c |only talib-0.9-2/talib/src/ta_CDLHIKKAKEMOD.c |only talib-0.9-2/talib/src/ta_CDLHOMINGPIGEON.c |only talib-0.9-2/talib/src/ta_CDLIDENTICAL3CROWS.c |only talib-0.9-2/talib/src/ta_CDLINNECK.c |only talib-0.9-2/talib/src/ta_CDLINVERTEDHAMMER.c |only talib-0.9-2/talib/src/ta_CDLKICKING.c |only talib-0.9-2/talib/src/ta_CDLKICKINGBYLENGTH.c |only talib-0.9-2/talib/src/ta_CDLLADDERBOTTOM.c |only talib-0.9-2/talib/src/ta_CDLLONGLEGGEDDOJI.c |only talib-0.9-2/talib/src/ta_CDLLONGLINE.c |only talib-0.9-2/talib/src/ta_CDLMARUBOZU.c |only talib-0.9-2/talib/src/ta_CDLMATCHINGLOW.c |only talib-0.9-2/talib/src/ta_CDLMATHOLD.c |only talib-0.9-2/talib/src/ta_CDLMORNINGDOJISTAR.c |only talib-0.9-2/talib/src/ta_CDLMORNINGSTAR.c |only talib-0.9-2/talib/src/ta_CDLONNECK.c |only talib-0.9-2/talib/src/ta_CDLPIERCING.c |only talib-0.9-2/talib/src/ta_CDLRICKSHAWMAN.c |only talib-0.9-2/talib/src/ta_CDLRISEFALL3METHODS.c |only talib-0.9-2/talib/src/ta_CDLSEPARATINGLINES.c |only talib-0.9-2/talib/src/ta_CDLSHOOTINGSTAR.c |only talib-0.9-2/talib/src/ta_CDLSHORTLINE.c |only talib-0.9-2/talib/src/ta_CDLSPINNINGTOP.c |only talib-0.9-2/talib/src/ta_CDLSTALLEDPATTERN.c |only talib-0.9-2/talib/src/ta_CDLSTICKSANDWICH.c |only talib-0.9-2/talib/src/ta_CDLTAKURI.c |only talib-0.9-2/talib/src/ta_CDLTASUKIGAP.c |only talib-0.9-2/talib/src/ta_CDLTHRUSTING.c |only talib-0.9-2/talib/src/ta_CDLTRISTAR.c |only talib-0.9-2/talib/src/ta_CDLUNIQUE3RIVER.c |only talib-0.9-2/talib/src/ta_CDLUPSIDEGAP2CROWS.c |only talib-0.9-2/talib/src/ta_CDLXSIDEGAP3METHODS.c |only talib-0.9-2/talib/src/ta_CMO.c |only talib-0.9-2/talib/src/ta_CORREL.c |only talib-0.9-2/talib/src/ta_DEMA.c |only talib-0.9-2/talib/src/ta_DX.c |only talib-0.9-2/talib/src/ta_EMA.c |only talib-0.9-2/talib/src/ta_HT_DCPERIOD.c |only talib-0.9-2/talib/src/ta_HT_DCPHASE.c |only talib-0.9-2/talib/src/ta_HT_PHASOR.c |only talib-0.9-2/talib/src/ta_HT_SINE.c |only talib-0.9-2/talib/src/ta_HT_TRENDLINE.c |only talib-0.9-2/talib/src/ta_HT_TRENDMODE.c |only talib-0.9-2/talib/src/ta_IMI.c |only talib-0.9-2/talib/src/ta_KAMA.c |only talib-0.9-2/talib/src/ta_MACD.c |only talib-0.9-2/talib/src/ta_MACDEXT.c |only talib-0.9-2/talib/src/ta_MACDFIX.c |only talib-0.9-2/talib/src/ta_MAMA.c |only talib-0.9-2/talib/src/ta_MAX.c |only talib-0.9-2/talib/src/ta_MEDPRICE.c |only talib-0.9-2/talib/src/ta_MFI.c |only talib-0.9-2/talib/src/ta_MIDPRICE.c |only talib-0.9-2/talib/src/ta_MIN.c |only talib-0.9-2/talib/src/ta_MINUS_DI.c |only talib-0.9-2/talib/src/ta_MINUS_DM.c |only talib-0.9-2/talib/src/ta_MOM.c |only talib-0.9-2/talib/src/ta_NATR.c |only talib-0.9-2/talib/src/ta_OBV.c |only talib-0.9-2/talib/src/ta_PLUS_DI.c |only talib-0.9-2/talib/src/ta_PLUS_DM.c |only talib-0.9-2/talib/src/ta_PPO.c |only talib-0.9-2/talib/src/ta_ROC.c |only talib-0.9-2/talib/src/ta_ROCR.c |only talib-0.9-2/talib/src/ta_RSI.c |only talib-0.9-2/talib/src/ta_SAR.c |only talib-0.9-2/talib/src/ta_SAREXT.c |only talib-0.9-2/talib/src/ta_SMA.c |only talib-0.9-2/talib/src/ta_STDDEV.c |only talib-0.9-2/talib/src/ta_STOCH.c |only talib-0.9-2/talib/src/ta_STOCHF.c |only talib-0.9-2/talib/src/ta_STOCHRSI.c |only talib-0.9-2/talib/src/ta_SUM.c |only talib-0.9-2/talib/src/ta_T3.c |only talib-0.9-2/talib/src/ta_TEMA.c |only talib-0.9-2/talib/src/ta_TRANGE.c |only talib-0.9-2/talib/src/ta_TRIMA.c |only talib-0.9-2/talib/src/ta_TRIX.c |only talib-0.9-2/talib/src/ta_TYPPRICE.c |only talib-0.9-2/talib/src/ta_ULTOSC.c |only talib-0.9-2/talib/src/ta_VAR.c |only talib-0.9-2/talib/src/ta_VOLUME.c |only talib-0.9-2/talib/src/ta_WCLPRICE.c |only talib-0.9-2/talib/src/ta_WILLR.c |only talib-0.9-2/talib/src/ta_WMA.c |only talib-0.9-2/talib/tests/parity |only talib-0.9-2/talib/tests/testthat/test-moving_average_spec.R |only talib-0.9-2/talib/tests/testthat/test-ta_ROC.R |only talib-0.9-2/talib/vignettes/articles |only talib-0.9-3/talib/DESCRIPTION | 9 talib-0.9-3/talib/MD5 | 1955 - talib-0.9-3/talib/NAMESPACE | 375 talib-0.9-3/talib/NEWS.md | 365 talib-0.9-3/talib/R/GOOGL.R |only talib-0.9-3/talib/R/chart.R | 25 talib-0.9-3/talib/R/chart_build.R | 23 talib-0.9-3/talib/R/chart_elements.R | 20 talib-0.9-3/talib/R/chart_indicator.R | 108 talib-0.9-3/talib/R/chart_pattern.R | 8 talib-0.9-3/talib/R/helper.R | 46 talib-0.9-3/talib/R/lookback.R |only talib-0.9-3/talib/R/series.R | 317 talib-0.9-3/talib/R/ta_ACCBANDS.R | 108 talib-0.9-3/talib/R/ta_AD.R | 83 talib-0.9-3/talib/R/ta_ADOSC.R | 142 talib-0.9-3/talib/R/ta_ADX.R | 113 talib-0.9-3/talib/R/ta_ADXR.R | 113 talib-0.9-3/talib/R/ta_APO.R | 207 talib-0.9-3/talib/R/ta_AROON.R | 106 talib-0.9-3/talib/R/ta_AROONOSC.R | 113 talib-0.9-3/talib/R/ta_ATR.R | 111 talib-0.9-3/talib/R/ta_AVGDEV.R |only talib-0.9-3/talib/R/ta_AVGPRICE.R | 69 talib-0.9-3/talib/R/ta_BBANDS.R | 249 talib-0.9-3/talib/R/ta_BETA.R | 139 talib-0.9-3/talib/R/ta_BOP.R | 91 talib-0.9-3/talib/R/ta_CCI.R | 190 talib-0.9-3/talib/R/ta_CDL2CROWS.R | 100 talib-0.9-3/talib/R/ta_CDL3BLACKCROWS.R | 100 talib-0.9-3/talib/R/ta_CDL3INSIDE.R | 104 talib-0.9-3/talib/R/ta_CDL3LINESTRIKE.R | 100 talib-0.9-3/talib/R/ta_CDL3OUTSIDE.R | 104 talib-0.9-3/talib/R/ta_CDL3STARSINSOUTH.R | 104 talib-0.9-3/talib/R/ta_CDL3WHITESOLDIERS.R | 104 talib-0.9-3/talib/R/ta_CDLABANDONEDBABY.R | 120 talib-0.9-3/talib/R/ta_CDLADVANCEBLOCK.R | 100 talib-0.9-3/talib/R/ta_CDLBELTHOLD.R | 104 talib-0.9-3/talib/R/ta_CDLBREAKAWAY.R | 104 talib-0.9-3/talib/R/ta_CDLCLOSINGMARUBOZU.R | 100 talib-0.9-3/talib/R/ta_CDLCONCEALBABYSWALL.R | 100 talib-0.9-3/talib/R/ta_CDLCOUNTERATTACK.R | 104 talib-0.9-3/talib/R/ta_CDLDARKCLOUDCOVER.R | 120 talib-0.9-3/talib/R/ta_CDLDOJI.R | 93 talib-0.9-3/talib/R/ta_CDLDOJISTAR.R | 100 talib-0.9-3/talib/R/ta_CDLDRAGONFLYDOJI.R | 100 talib-0.9-3/talib/R/ta_CDLENGULFING.R | 97 talib-0.9-3/talib/R/ta_CDLEVENINGDOJISTAR.R | 120 talib-0.9-3/talib/R/ta_CDLEVENINGSTAR.R | 120 talib-0.9-3/talib/R/ta_CDLGAPSIDESIDEWHITE.R | 100 talib-0.9-3/talib/R/ta_CDLGRAVESTONEDOJI.R | 100 talib-0.9-3/talib/R/ta_CDLHAMMER.R | 93 talib-0.9-3/talib/R/ta_CDLHANGINGMAN.R | 100 talib-0.9-3/talib/R/ta_CDLHARAMI.R | 97 talib-0.9-3/talib/R/ta_CDLHARAMICROSS.R | 104 talib-0.9-3/talib/R/ta_CDLHIGHWAVE.R | 104 talib-0.9-3/talib/R/ta_CDLHIKKAKE.R | 97 talib-0.9-3/talib/R/ta_CDLHIKKAKEMOD.R | 104 talib-0.9-3/talib/R/ta_CDLHOMINGPIGEON.R | 100 talib-0.9-3/talib/R/ta_CDLIDENTICAL3CROWS.R | 100 talib-0.9-3/talib/R/ta_CDLINNECK.R | 104 talib-0.9-3/talib/R/ta_CDLINVERTEDHAMMER.R | 100 talib-0.9-3/talib/R/ta_CDLKICKING.R | 93 talib-0.9-3/talib/R/ta_CDLKICKINGBYLENGTH.R | 104 talib-0.9-3/talib/R/ta_CDLLADDERBOTTOM.R | 100 talib-0.9-3/talib/R/ta_CDLLONGLEGGEDDOJI.R | 100 talib-0.9-3/talib/R/ta_CDLLONGLINE.R | 104 talib-0.9-3/talib/R/ta_CDLMARUBOZU.R | 93 talib-0.9-3/talib/R/ta_CDLMATCHINGLOW.R | 100 talib-0.9-3/talib/R/ta_CDLMATHOLD.R | 120 talib-0.9-3/talib/R/ta_CDLMORNINGDOJISTAR.R | 120 talib-0.9-3/talib/R/ta_CDLMORNINGSTAR.R | 120 talib-0.9-3/talib/R/ta_CDLONNECK.R | 104 talib-0.9-3/talib/R/ta_CDLPIERCING.R | 97 talib-0.9-3/talib/R/ta_CDLRICKSHAWMAN.R | 100 talib-0.9-3/talib/R/ta_CDLRISEFALL3METHODS.R | 100 talib-0.9-3/talib/R/ta_CDLSEPARATINGLINES.R | 100 talib-0.9-3/talib/R/ta_CDLSHOOTINGSTAR.R | 100 talib-0.9-3/talib/R/ta_CDLSHORTLINE.R | 100 talib-0.9-3/talib/R/ta_CDLSPINNINGTOP.R | 100 talib-0.9-3/talib/R/ta_CDLSTALLEDPATTERN.R | 100 talib-0.9-3/talib/R/ta_CDLSTICKSANDWICH.R | 100 talib-0.9-3/talib/R/ta_CDLTAKURI.R | 97 talib-0.9-3/talib/R/ta_CDLTASUKIGAP.R | 100 talib-0.9-3/talib/R/ta_CDLTHRUSTING.R | 97 talib-0.9-3/talib/R/ta_CDLTRISTAR.R | 97 talib-0.9-3/talib/R/ta_CDLUNIQUE3RIVER.R | 104 talib-0.9-3/talib/R/ta_CDLUPSIDEGAP2CROWS.R | 100 talib-0.9-3/talib/R/ta_CDLXSIDEGAP3METHODS.R | 100 talib-0.9-3/talib/R/ta_CMF.R |only talib-0.9-3/talib/R/ta_CMO.R | 142 talib-0.9-3/talib/R/ta_CMOU.R |only talib-0.9-3/talib/R/ta_CORREL.R | 139 talib-0.9-3/talib/R/ta_DEMA.R | 159 talib-0.9-3/talib/R/ta_DX.R | 111 talib-0.9-3/talib/R/ta_EMA.R | 159 talib-0.9-3/talib/R/ta_HMA.R |only talib-0.9-3/talib/R/ta_HT_DCPERIOD.R | 106 talib-0.9-3/talib/R/ta_HT_DCPHASE.R | 108 talib-0.9-3/talib/R/ta_HT_PHASOR.R | 106 talib-0.9-3/talib/R/ta_HT_SINE.R | 106 talib-0.9-3/talib/R/ta_HT_TRENDLINE.R | 94 talib-0.9-3/talib/R/ta_HT_TRENDMODE.R | 106 talib-0.9-3/talib/R/ta_IMI.R | 119 talib-0.9-3/talib/R/ta_KAMA.R | 159 talib-0.9-3/talib/R/ta_MACD.R | 229 talib-0.9-3/talib/R/ta_MACDEXT.R | 307 talib-0.9-3/talib/R/ta_MACDFIX.R | 166 talib-0.9-3/talib/R/ta_MAMA.R | 228 talib-0.9-3/talib/R/ta_MAVP.R |only talib-0.9-3/talib/R/ta_MAX.R | 145 talib-0.9-3/talib/R/ta_MEDPRICE.R | 69 talib-0.9-3/talib/R/ta_MFI.R | 113 talib-0.9-3/talib/R/ta_MIDPOINT.R |only talib-0.9-3/talib/R/ta_MIDPRICE.R | 243 talib-0.9-3/talib/R/ta_MIN.R | 145 talib-0.9-3/talib/R/ta_MINUS_DI.R | 111 talib-0.9-3/talib/R/ta_MINUS_DM.R | 111 talib-0.9-3/talib/R/ta_MOM.R | 135 talib-0.9-3/talib/R/ta_NATR.R | 111 talib-0.9-3/talib/R/ta_NVI.R |only talib-0.9-3/talib/R/ta_OBV.R | 91 talib-0.9-3/talib/R/ta_PLUS_DI.R | 111 talib-0.9-3/talib/R/ta_PLUS_DM.R | 111 talib-0.9-3/talib/R/ta_PPO.R | 207 talib-0.9-3/talib/R/ta_PVI.R |only talib-0.9-3/talib/R/ta_PVO.R |only talib-0.9-3/talib/R/ta_ROCR.R | 166 talib-0.9-3/talib/R/ta_RSI.R | 140 talib-0.9-3/talib/R/ta_SAR.R | 137 talib-0.9-3/talib/R/ta_SAREXT.R | 305 talib-0.9-3/talib/R/ta_SMA.R | 159 talib-0.9-3/talib/R/ta_STDDEV.R | 138 talib-0.9-3/talib/R/ta_STOCH.R | 197 talib-0.9-3/talib/R/ta_STOCHF.R | 167 talib-0.9-3/talib/R/ta_STOCHRSI.R | 219 talib-0.9-3/talib/R/ta_SUM.R | 123 talib-0.9-3/talib/R/ta_T3.R | 195 talib-0.9-3/talib/R/ta_TEMA.R | 159 talib-0.9-3/talib/R/ta_TRANGE.R | 81 talib-0.9-3/talib/R/ta_TRIMA.R | 159 talib-0.9-3/talib/R/ta_TRIX.R | 148 talib-0.9-3/talib/R/ta_TYPPRICE.R | 69 talib-0.9-3/talib/R/ta_ULTOSC.R | 156 talib-0.9-3/talib/R/ta_VAR.R | 138 talib-0.9-3/talib/R/ta_VOLUME.R | 117 talib-0.9-3/talib/R/ta_VWMA.R |only talib-0.9-3/talib/R/ta_WCLPRICE.R | 69 talib-0.9-3/talib/R/ta_WILLR.R | 121 talib-0.9-3/talib/R/ta_WMA.R | 159 talib-0.9-3/talib/R/utils.R | 175 talib-0.9-3/talib/R/zzz.R | 2 talib-0.9-3/talib/README.md | 376 talib-0.9-3/talib/build/vignette.rds |binary talib-0.9-3/talib/configure | 34 talib-0.9-3/talib/configure.win | 38 talib-0.9-3/talib/data/GOOGL.rda |only talib-0.9-3/talib/inst/doc/candlestick.R | 2 talib-0.9-3/talib/inst/doc/candlestick.Rmd | 6 talib-0.9-3/talib/inst/doc/candlestick.html | 31 talib-0.9-3/talib/inst/doc/charting.R | 84 talib-0.9-3/talib/inst/doc/charting.Rmd | 86 talib-0.9-3/talib/inst/doc/charting.html | 192 talib-0.9-3/talib/inst/doc/talib.R | 25 talib-0.9-3/talib/inst/doc/talib.Rmd | 25 talib-0.9-3/talib/inst/doc/talib.html | 98 talib-0.9-3/talib/man/GOOGL.Rd |only talib-0.9-3/talib/man/abandoned_baby.Rd | 15 talib-0.9-3/talib/man/absolute_price_oscillator.Rd | 29 talib-0.9-3/talib/man/acceleration_bands.Rd | 24 talib-0.9-3/talib/man/advance_block.Rd | 11 talib-0.9-3/talib/man/aroon.Rd | 20 talib-0.9-3/talib/man/aroon_oscillator.Rd | 21 talib-0.9-3/talib/man/average_deviation.Rd |only talib-0.9-3/talib/man/average_directional_movement_index.Rd | 27 talib-0.9-3/talib/man/average_directional_movement_index_rating.Rd | 21 talib-0.9-3/talib/man/average_price.Rd | 13 talib-0.9-3/talib/man/average_true_range.Rd | 19 talib-0.9-3/talib/man/balance_of_power.Rd | 19 talib-0.9-3/talib/man/belt_hold.Rd | 13 talib-0.9-3/talib/man/bollinger_bands.Rd | 37 talib-0.9-3/talib/man/break_away.Rd | 13 talib-0.9-3/talib/man/chaikin_accumulation_distribution_line.Rd | 19 talib-0.9-3/talib/man/chaikin_accumulation_distribution_oscillator.Rd | 27 talib-0.9-3/talib/man/chaikin_money_flow.Rd |only talib-0.9-3/talib/man/chande_momentum_oscillator.Rd | 21 talib-0.9-3/talib/man/closing_marubozu.Rd | 11 talib-0.9-3/talib/man/commodity_channel_index.Rd | 21 talib-0.9-3/talib/man/concealing_baby_swallow.Rd | 11 talib-0.9-3/talib/man/counter_attack.Rd | 13 talib-0.9-3/talib/man/dark_cloud_cover.Rd | 15 talib-0.9-3/talib/man/directional_movement_index.Rd | 21 talib-0.9-3/talib/man/doji.Rd | 10 talib-0.9-3/talib/man/doji_star.Rd | 11 talib-0.9-3/talib/man/dominant_cycle_period.Rd | 15 talib-0.9-3/talib/man/dominant_cycle_phase.Rd | 15 talib-0.9-3/talib/man/double_exponential_moving_average.Rd | 34 talib-0.9-3/talib/man/dragonfly_doji.Rd | 11 talib-0.9-3/talib/man/engulfing.Rd | 12 talib-0.9-3/talib/man/evening_doji_star.Rd | 15 talib-0.9-3/talib/man/evening_star.Rd | 15 talib-0.9-3/talib/man/examples/MAVP-example.R |only talib-0.9-3/talib/man/examples/indicator.R | 12 talib-0.9-3/talib/man/exponential_moving_average.Rd | 28 talib-0.9-3/talib/man/extended_moving_average_convergence_divergence.Rd | 40 talib-0.9-3/talib/man/extended_parabolic_stop_and_reverse.Rd | 54 talib-0.9-3/talib/man/fast_stochastic.Rd | 35 talib-0.9-3/talib/man/figures/README-charting-example-1.png |only talib-0.9-3/talib/man/figures/logo.svg |only talib-0.9-3/talib/man/figures/social-preview.png |only talib-0.9-3/talib/man/figures/social-preview.svg |only talib-0.9-3/talib/man/fixed_moving_average_convergence_divergence.Rd | 23 talib-0.9-3/talib/man/gaps_side_white.Rd | 11 talib-0.9-3/talib/man/gravestone_doji.Rd | 11 talib-0.9-3/talib/man/hammer.Rd | 10 talib-0.9-3/talib/man/hanging_man.Rd | 11 talib-0.9-3/talib/man/harami.Rd | 12 talib-0.9-3/talib/man/harami_cross.Rd | 13 talib-0.9-3/talib/man/high_wave.Rd | 13 talib-0.9-3/talib/man/hikakke.Rd | 12 talib-0.9-3/talib/man/hikakke_mod.Rd | 13 talib-0.9-3/talib/man/homing_pigeon.Rd | 11 talib-0.9-3/talib/man/hull_moving_average.Rd |only talib-0.9-3/talib/man/in_neck.Rd | 13 talib-0.9-3/talib/man/indicator.Rd | 12 talib-0.9-3/talib/man/intraday_movement_index.Rd | 23 talib-0.9-3/talib/man/inverted_hammer.Rd | 11 talib-0.9-3/talib/man/kaufman_adaptive_moving_average.Rd | 34 talib-0.9-3/talib/man/kicking.Rd | 10 talib-0.9-3/talib/man/kicking_baby_length.Rd | 13 talib-0.9-3/talib/man/ladder_bottom.Rd | 11 talib-0.9-3/talib/man/long_legged_doji.Rd | 11 talib-0.9-3/talib/man/long_line.Rd | 13 talib-0.9-3/talib/man/lookback.Rd |only talib-0.9-3/talib/man/marubozu.Rd | 10 talib-0.9-3/talib/man/mat_hold.Rd | 15 talib-0.9-3/talib/man/matching_low.Rd | 11 talib-0.9-3/talib/man/median_price.Rd | 13 talib-0.9-3/talib/man/mesa_adaptive_moving_average.Rd | 38 talib-0.9-3/talib/man/midpoint_period.Rd |only talib-0.9-3/talib/man/midpoint_price.Rd | 60 talib-0.9-3/talib/man/minus_directional_indicator.Rd | 21 talib-0.9-3/talib/man/minus_directional_movement.Rd | 21 talib-0.9-3/talib/man/momentum.Rd | 20 talib-0.9-3/talib/man/money_flow_index.Rd | 21 talib-0.9-3/talib/man/morning_doji_star.Rd | 15 talib-0.9-3/talib/man/morning_star.Rd | 15 talib-0.9-3/talib/man/moving_average_convergence_divergence.Rd | 31 talib-0.9-3/talib/man/negative_volume_index.Rd |only talib-0.9-3/talib/man/normalized_average_true_range.Rd | 19 talib-0.9-3/talib/man/on_balance_volume.Rd | 21 talib-0.9-3/talib/man/on_neck.Rd | 13 talib-0.9-3/talib/man/parabolic_stop_and_reverse.Rd | 30 talib-0.9-3/talib/man/percentage_price_oscillator.Rd | 29 talib-0.9-3/talib/man/percentage_volume_oscillator.Rd |only talib-0.9-3/talib/man/phasor_components.Rd | 15 talib-0.9-3/talib/man/piercing.Rd | 12 talib-0.9-3/talib/man/plus_directional_indicator.Rd | 21 talib-0.9-3/talib/man/plus_directional_movement.Rd | 21 talib-0.9-3/talib/man/positive_volume_index.Rd |only talib-0.9-3/talib/man/ratio_of_change.Rd | 23 talib-0.9-3/talib/man/relative_strength_index.Rd | 21 talib-0.9-3/talib/man/rickshaw_man.Rd | 11 talib-0.9-3/talib/man/rise_fall_3_methods.Rd | 11 talib-0.9-3/talib/man/rolling_beta.Rd | 24 talib-0.9-3/talib/man/rolling_correlation.Rd | 24 talib-0.9-3/talib/man/rolling_maximum.Rd |only talib-0.9-3/talib/man/rolling_minimum.Rd |only talib-0.9-3/talib/man/rolling_standard_deviation.Rd | 32 talib-0.9-3/talib/man/rolling_sum.Rd | 24 talib-0.9-3/talib/man/rolling_variance.Rd | 26 talib-0.9-3/talib/man/separating_lines.Rd | 11 talib-0.9-3/talib/man/shooting_star.Rd | 11 talib-0.9-3/talib/man/short_line.Rd | 11 talib-0.9-3/talib/man/simple_moving_average.Rd | 28 talib-0.9-3/talib/man/sine_wave.Rd | 15 talib-0.9-3/talib/man/spinning_top.Rd | 11 talib-0.9-3/talib/man/stalled_pattern.Rd | 11 talib-0.9-3/talib/man/stick_sandwich.Rd | 11 talib-0.9-3/talib/man/stochastic.Rd | 34 talib-0.9-3/talib/man/stochastic_relative_strength_index.Rd | 32 talib-0.9-3/talib/man/t3_exponential_moving_average.Rd | 34 talib-0.9-3/talib/man/takuri.Rd | 12 talib-0.9-3/talib/man/tasuki_gap.Rd | 11 talib-0.9-3/talib/man/three_black_crows.Rd | 11 talib-0.9-3/talib/man/three_identical_crows.Rd | 11 talib-0.9-3/talib/man/three_inside.Rd | 13 talib-0.9-3/talib/man/three_line_strike.Rd | 11 talib-0.9-3/talib/man/three_outside.Rd | 13 talib-0.9-3/talib/man/three_stars_in_the_south.Rd | 13 talib-0.9-3/talib/man/three_white_soldiers.Rd | 13 talib-0.9-3/talib/man/thrusting.Rd | 12 talib-0.9-3/talib/man/trading_volume.Rd | 25 talib-0.9-3/talib/man/trend_cycle_mode.Rd | 15 talib-0.9-3/talib/man/trendline.Rd | 19 talib-0.9-3/talib/man/triangular_moving_average.Rd | 28 talib-0.9-3/talib/man/triple_exponential_average.Rd | 23 talib-0.9-3/talib/man/triple_exponential_moving_average.Rd | 34 talib-0.9-3/talib/man/tristar.Rd | 12 talib-0.9-3/talib/man/true_range.Rd | 15 talib-0.9-3/talib/man/two_crows.Rd | 11 talib-0.9-3/talib/man/typical_price.Rd | 13 talib-0.9-3/talib/man/ultimate_oscillator.Rd | 34 talib-0.9-3/talib/man/unique_3_river.Rd | 13 talib-0.9-3/talib/man/unsmoothed_chande_momentum_oscillator.Rd |only talib-0.9-3/talib/man/upside_gap_2_crows.Rd | 11 talib-0.9-3/talib/man/variable_moving_average_period.Rd |only talib-0.9-3/talib/man/volume_weighted_moving_average.Rd |only talib-0.9-3/talib/man/weighted_close_price.Rd | 13 talib-0.9-3/talib/man/weighted_moving_average.Rd | 30 talib-0.9-3/talib/man/williams_oscillator.Rd | 25 talib-0.9-3/talib/man/xside_gap_3_methods.Rd | 11 talib-0.9-3/talib/src/NA-handling.c |only talib-0.9-3/talib/src/NA-handling.h |only talib-0.9-3/talib/src/TA-Lib.c |only talib-0.9-3/talib/src/TA-Lib.h |only talib-0.9-3/talib/src/attributes.c | 49 talib-0.9-3/talib/src/attributes.h | 21 talib-0.9-3/talib/src/data-frame.c |only talib-0.9-3/talib/src/init.c | 245 talib-0.9-3/talib/src/names.c | 81 talib-0.9-3/talib/src/names.h | 37 talib-0.9-3/talib/src/normalize.h | 82 talib-0.9-3/talib/src/preprocessor.h |only talib-0.9-3/talib/src/shift.c |only talib-0.9-3/talib/src/shift.h | 121 talib-0.9-3/talib/src/ta-lib/CMakeLists.txt | 711 talib-0.9-3/talib/src/ta-lib/LICENSE | 2 talib-0.9-3/talib/src/ta-lib/VERSION | 2 talib-0.9-3/talib/src/ta-lib/aclocal.m4 |only talib-0.9-3/talib/src/ta-lib/ar-lib |only talib-0.9-3/talib/src/ta-lib/cmake/warn-stale-installs.cmake.in |only talib-0.9-3/talib/src/ta-lib/compile |only talib-0.9-3/talib/src/ta-lib/conanfile.py |only talib-0.9-3/talib/src/ta-lib/config.guess |only talib-0.9-3/talib/src/ta-lib/config.log |only talib-0.9-3/talib/src/ta-lib/config.status |only talib-0.9-3/talib/src/ta-lib/config.sub |only talib-0.9-3/talib/src/ta-lib/configure |only talib-0.9-3/talib/src/ta-lib/depcomp |only talib-0.9-3/talib/src/ta-lib/include/stamp-h1 |only talib-0.9-3/talib/src/ta-lib/include/ta_abstract.h | 66 talib-0.9-3/talib/src/ta-lib/include/ta_common.h | 25 talib-0.9-3/talib/src/ta-lib/include/ta_config.h.in |only talib-0.9-3/talib/src/ta-lib/include/ta_defs.h | 399 talib-0.9-3/talib/src/ta-lib/include/ta_func.h | 6481 +++ talib-0.9-3/talib/src/ta-lib/include/ta_libc.h | 2 talib-0.9-3/talib/src/ta-lib/install-sh |only talib-0.9-3/talib/src/ta-lib/libtool |only talib-0.9-3/talib/src/ta-lib/ltmain.sh |only talib-0.9-3/talib/src/ta-lib/missing |only talib-0.9-3/talib/src/ta-lib/rust-toolchain.toml |only talib-0.9-3/talib/src/ta-lib/src/ta_abstract/frames/ta_frame.c | 7326 ++- talib-0.9-3/talib/src/ta-lib/src/ta_abstract/frames/ta_frame.h | 2079 - talib-0.9-3/talib/src/ta-lib/src/ta_abstract/ta_abstract.c | 350 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/ta_def_ui.c | 601 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/ta_def_ui.h | 70 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/ta_frame_priv.h | 17 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/ta_func_api.c |18577 +++++----- talib-0.9-3/talib/src/ta-lib/src/ta_abstract/ta_group_idx.c | 64 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_a.c | 474 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_b.c | 175 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_c.c | 1036 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_d.c | 60 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_e.c | 86 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_f.c | 38 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_g.c | 20 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_h.c | 160 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_i.c | 31 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_j.c | 20 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_k.c | 30 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_l.c | 128 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_m.c | 608 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_n.c | 45 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_o.c | 27 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_p.c | 122 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_q.c | 63 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_r.c | 66 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_s.c | 935 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_t.c | 172 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_u.c | 94 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_v.c | 78 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_w.c | 75 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_x.c | 20 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_y.c | 20 talib-0.9-3/talib/src/ta-lib/src/ta_abstract/tables/table_z.c | 20 talib-0.9-3/talib/src/ta-lib/src/ta_common/ta_global.c | 65 talib-0.9-3/talib/src/ta-lib/src/ta_common/ta_global.h | 2 talib-0.9-3/talib/src/ta-lib/src/ta_common/ta_memory.h | 172 talib-0.9-3/talib/src/ta-lib/src/ta_common/ta_pragma.h | 2 talib-0.9-3/talib/src/ta-lib/src/ta_common/ta_retcode.c | 9 talib-0.9-3/talib/src/ta-lib/src/ta_common/ta_retcode.csv | 3 talib-0.9-3/talib/src/ta-lib/src/ta_common/ta_version.c | 13 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_AC.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ACCBANDS.c | 1224 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ACOS.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_AD.c | 639 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ADD.c | 499 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ADOSC.c | 1003 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ADX.c | 1682 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ADXR.c | 846 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_AO.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_APO.c | 1134 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_AROON.c | 1044 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_AROONOSC.c | 1045 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ASIN.c | 483 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ATAN.c | 485 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ATR.c | 1063 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_AVGDEV.c | 749 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_AVGPRICE.c | 544 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_BBANDS.c | 1650 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_BETA.c | 1923 - talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_BOP.c | 604 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CCI.c | 1004 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDL2CROWS.c | 828 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDL3BLACKCROWS.c | 903 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDL3INSIDE.c | 909 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDL3LINESTRIKE.c | 897 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDL3OUTSIDE.c | 690 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDL3STARSINSOUTH.c | 1182 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDL3WHITESOLDIERS.c | 1229 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLABANDONEDBABY.c | 1088 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLADVANCEBLOCK.c | 1378 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLBELTHOLD.c | 876 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLBREAKAWAY.c | 865 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLCLOSINGMARUBOZU.c | 877 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLCONCEALBABYSWALL.c | 903 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLCOUNTERATTACK.c | 918 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLDARKCLOUDCOVER.c | 855 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLDOJI.c | 760 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLDOJISTAR.c | 884 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLDRAGONFLYDOJI.c | 863 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLENGULFING.c | 716 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLEVENINGDOJISTAR.c | 1063 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLEVENINGSTAR.c | 986 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLGAPSIDESIDEWHITE.c | 915 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLGRAVESTONEDOJI.c | 862 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLHAMMER.c | 1081 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLHANGINGMAN.c | 1081 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLHARAMI.c | 973 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLHARAMICROSS.c | 962 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLHIGHWAVE.c | 856 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLHIKKAKE.c | 899 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLHIKKAKEMOD.c | 1078 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLHOMINGPIGEON.c | 894 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLIDENTICAL3CROWS.c | 1013 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLINNECK.c | 895 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLINVERTEDHAMMER.c | 979 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLKICKING.c | 959 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLKICKINGBYLENGTH.c | 960 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLLADDERBOTTOM.c | 846 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLLONGLEGGEDDOJI.c | 862 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLLONGLINE.c | 854 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLMARUBOZU.c | 857 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLMATCHINGLOW.c | 789 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLMATHOLD.c | 1086 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLMORNINGDOJISTAR.c | 1063 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLMORNINGSTAR.c | 986 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLONNECK.c | 894 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLPIERCING.c | 837 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLRICKSHAWMAN.c | 978 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLRISEFALL3METHODS.c | 1046 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLSEPARATINGLINES.c | 1000 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLSHOOTINGSTAR.c | 977 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLSHORTLINE.c | 856 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLSPINNINGTOP.c | 766 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLSTALLEDPATTERN.c | 1180 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLSTICKSANDWICH.c | 815 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLTAKURI.c | 957 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLTASUKIGAP.c | 867 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLTHRUSTING.c | 898 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLTRISTAR.c | 863 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLUNIQUE3RIVER.c | 921 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLUPSIDEGAP2CROWS.c | 923 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CDLXSIDEGAP3METHODS.c | 723 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CEIL.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CMF.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CMO.c | 1267 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CMOU.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_CORREL.c | 1523 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_COS.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_COSH.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_DEMA.c | 1082 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_DIV.c | 499 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_DX.c | 1534 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_EFI.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_EMA.c | 923 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_EXP.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_FLOOR.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_HMA.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_HT_DCPERIOD.c | 1821 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_HT_DCPHASE.c | 2181 - talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_HT_PHASOR.c | 1856 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_HT_SINE.c | 2227 - talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_HT_TRENDLINE.c | 2072 - talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_HT_TRENDMODE.c | 2608 + talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_IMI.c | 791 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_KAMA.c | 1332 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_LINEARREG.c | 1171 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_LINEARREG_ANGLE.c | 1149 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_LINEARREG_INTERCEPT.c | 1154 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_LINEARREG_SLOPE.c | 1141 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_LN.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_LOG10.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MA.c | 1318 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MACD.c | 1607 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MACDEXT.c | 1530 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MACDFIX.c | 1124 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MAMA.c | 2152 - talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MARKETFI.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MAVP.c | 1438 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MAX.c | 1007 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MAXINDEX.c | 837 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MEDPRICE.c | 516 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MFI.c | 1393 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MIDPOINT.c | 1175 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MIDPRICE.c | 1217 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MIN.c | 1004 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MININDEX.c | 837 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MINMAX.c | 1261 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MINMAXINDEX.c | 1016 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MINUS_DI.c | 1736 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MINUS_DM.c | 1254 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MOM.c | 675 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_MULT.c | 511 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_NATR.c | 1229 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_NVI.c | 579 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_OBV.c | 572 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_PLUS_DI.c | 1736 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_PLUS_DM.c | 1256 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_PPO.c | 951 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_PVI.c | 579 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_PVO.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_QSTICK.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ROC.c | 708 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ROCP.c | 707 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ROCR.c | 708 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ROCR100.c | 707 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_RSI.c | 1343 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_SAR.c | 1469 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_SAREXT.c | 1979 - talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_SIN.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_SINH.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_SMA.c | 812 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_SMI.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_SQRT.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_STDDEV.c | 926 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_STOCH.c | 1767 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_STOCHF.c | 1580 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_STOCHRSI.c | 1037 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_SUB.c | 502 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_SUM.c | 708 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_T3.c | 1159 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_TAN.c | 483 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_TANH.c | 482 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_TEMA.c | 1166 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_TRANGE.c | 688 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_TRIMA.c | 1437 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_TRIX.c | 1096 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_TSF.c | 1171 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_TYPPRICE.c | 532 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_ULTOSC.c | 1816 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_VAR.c | 1338 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_VWAP.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_VWMA.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_WAD.c |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_WCLPRICE.c | 531 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_WILLR.c | 1345 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_WMA.c | 1167 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_func_stream_private.h |only talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_utility.c | 129 talib-0.9-3/talib/src/ta-lib/src/ta_func/ta_utility.h | 353 talib-0.9-3/talib/src/ta-lib/src/tools/post-build-bin.sh | 6 talib-0.9-3/talib/src/ta-lib/src/tools/ta_alloc_check.h |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_bench |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/CLAUDE.md |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ReadMe.txt | 2 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/codegen_pipe.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/codegen_pipe.h |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/fuzz_data.h |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/server_verify.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/server_verify.h |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_error_number.h | 182 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_stream_frame.h |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func.h | 23 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_1in_1out.c | 46 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_1in_2out.c | 24 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_adx.c | 48 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_avgdev.c | 19 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_bbands.c | 823 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_beta.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_candlestick.c |11394 ++++++ talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_cmf.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_cmou.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_composite1.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_composite2.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_correl.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_div_zero.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_imi.c | 155 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_linearreg.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_ma.c | 136 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_macd.c | 57 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_marketfi.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_mavp.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_mfi.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_minmax.c | 359 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_mom.c | 28 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_per_cv.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_per_ema.c | 32 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_per_hl.c | 167 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_per_hlc.c | 368 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_per_hlcv.c | 206 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_per_ohlc.c | 44 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_period_boundary.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_po.c | 202 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_quote_unit.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_reference.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_rolling_extremum.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_rsi.c | 20 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_s_overflow.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_sar.c | 19 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_stddev.c | 632 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_stoch.c | 239 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_stream_finite.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_trange.c | 32 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_variants.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_vwap.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_func/test_wma.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_legacy.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_legacy_data.h |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_priv.h | 106 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_reference.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_reference.h |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_reference_golden.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_test_reference_golden.h |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/ta_variant_frame.h |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/test_abstract.c | 3086 + talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/test_codegen.c |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/test_codegen.h |only talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/test_internals.c | 1832 talib-0.9-3/talib/src/ta-lib/src/tools/ta_regtest/test_util.c | 508 talib-0.9-3/talib/src/ta-lib/ta-lib.dpkg |only talib-0.9-3/talib/src/ta-lib/ta-lib.pc |only talib-0.9-3/talib/src/ta-lib/ta-lib.spec |only talib-0.9-3/talib/src/ta-lib/ta_func_api.xml | 1883 - talib-0.9-3/talib/src/ta-lib/ta_func_list.txt | 19 talib-0.9-3/talib/src/ta-lib/uninstall | 7 talib-0.9-3/talib/src/ta-lib/website |only talib-0.9-3/talib/src/utils.c |only talib-0.9-3/talib/src/utils.h |only talib-0.9-3/talib/src/volume.c |only talib-0.9-3/talib/src/wrapper.h |only talib-0.9-3/talib/tests/testthat/helper-library.R |only talib-0.9-3/talib/tests/testthat/test-charting.R | 8 talib-0.9-3/talib/tests/testthat/test-series.R | 246 talib-0.9-3/talib/tests/testthat/test-ta_ACCBANDS.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_AD.R | 78 talib-0.9-3/talib/tests/testthat/test-ta_ADOSC.R | 81 talib-0.9-3/talib/tests/testthat/test-ta_ADX.R | 75 talib-0.9-3/talib/tests/testthat/test-ta_ADXR.R | 78 talib-0.9-3/talib/tests/testthat/test-ta_APO.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_AROON.R | 51 talib-0.9-3/talib/tests/testthat/test-ta_AROONOSC.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_ATR.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_AVGDEV.R |only talib-0.9-3/talib/tests/testthat/test-ta_AVGPRICE.R | 72 talib-0.9-3/talib/tests/testthat/test-ta_BBANDS.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_BETA.R | 46 talib-0.9-3/talib/tests/testthat/test-ta_BOP.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CCI.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDL2CROWS.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDL3BLACKCROWS.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDL3INSIDE.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDL3LINESTRIKE.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDL3OUTSIDE.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDL3STARSINSOUTH.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDL3WHITESOLDIERS.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLABANDONEDBABY.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLADVANCEBLOCK.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLBELTHOLD.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLBREAKAWAY.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLCLOSINGMARUBOZU.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLCONCEALBABYSWALL.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLCOUNTERATTACK.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLDARKCLOUDCOVER.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLDOJI.R | 51 talib-0.9-3/talib/tests/testthat/test-ta_CDLDOJISTAR.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLDRAGONFLYDOJI.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLENGULFING.R | 53 talib-0.9-3/talib/tests/testthat/test-ta_CDLEVENINGDOJISTAR.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLEVENINGSTAR.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLGAPSIDESIDEWHITE.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLGRAVESTONEDOJI.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLHAMMER.R | 51 talib-0.9-3/talib/tests/testthat/test-ta_CDLHANGINGMAN.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLHARAMI.R | 51 talib-0.9-3/talib/tests/testthat/test-ta_CDLHARAMICROSS.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLHIGHWAVE.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLHIKKAKE.R | 51 talib-0.9-3/talib/tests/testthat/test-ta_CDLHIKKAKEMOD.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLHOMINGPIGEON.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLIDENTICAL3CROWS.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLINNECK.R | 69 talib-0.9-3/talib/tests/testthat/test-ta_CDLINVERTEDHAMMER.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLKICKING.R | 51 talib-0.9-3/talib/tests/testthat/test-ta_CDLKICKINGBYLENGTH.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLLADDERBOTTOM.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLLONGLEGGEDDOJI.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLLONGLINE.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLMARUBOZU.R | 53 talib-0.9-3/talib/tests/testthat/test-ta_CDLMATCHINGLOW.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLMATHOLD.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLMORNINGDOJISTAR.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLMORNINGSTAR.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLONNECK.R | 69 talib-0.9-3/talib/tests/testthat/test-ta_CDLPIERCING.R | 53 talib-0.9-3/talib/tests/testthat/test-ta_CDLRICKSHAWMAN.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLRISEFALL3METHODS.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLSEPARATINGLINES.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLSHOOTINGSTAR.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLSHORTLINE.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLSPINNINGTOP.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLSTALLEDPATTERN.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLSTICKSANDWICH.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLTAKURI.R | 51 talib-0.9-3/talib/tests/testthat/test-ta_CDLTASUKIGAP.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLTHRUSTING.R | 53 talib-0.9-3/talib/tests/testthat/test-ta_CDLTRISTAR.R | 51 talib-0.9-3/talib/tests/testthat/test-ta_CDLUNIQUE3RIVER.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLUPSIDEGAP2CROWS.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CDLXSIDEGAP3METHODS.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_CMF.R |only talib-0.9-3/talib/tests/testthat/test-ta_CMO.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_CMOU.R |only talib-0.9-3/talib/tests/testthat/test-ta_CORREL.R | 46 talib-0.9-3/talib/tests/testthat/test-ta_DEMA.R | 91 talib-0.9-3/talib/tests/testthat/test-ta_DX.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_EMA.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_HMA.R |only talib-0.9-3/talib/tests/testthat/test-ta_HT_DCPERIOD.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_HT_DCPHASE.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_HT_PHASOR.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_HT_SINE.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_HT_TRENDLINE.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_HT_TRENDMODE.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_IMI.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_KAMA.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_MACD.R | 96 talib-0.9-3/talib/tests/testthat/test-ta_MACDEXT.R | 99 talib-0.9-3/talib/tests/testthat/test-ta_MACDFIX.R | 99 talib-0.9-3/talib/tests/testthat/test-ta_MAMA.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_MAVP.R |only talib-0.9-3/talib/tests/testthat/test-ta_MAX.R | 49 talib-0.9-3/talib/tests/testthat/test-ta_MEDPRICE.R | 72 talib-0.9-3/talib/tests/testthat/test-ta_MFI.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_MIDPOINT.R |only talib-0.9-3/talib/tests/testthat/test-ta_MIDPRICE.R | 158 talib-0.9-3/talib/tests/testthat/test-ta_MIN.R | 49 talib-0.9-3/talib/tests/testthat/test-ta_MINUS_DI.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_MINUS_DM.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_MOM.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_NATR.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_NVI.R |only talib-0.9-3/talib/tests/testthat/test-ta_OBV.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_PLUS_DI.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_PLUS_DM.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_PPO.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_PVI.R |only talib-0.9-3/talib/tests/testthat/test-ta_PVO.R |only talib-0.9-3/talib/tests/testthat/test-ta_ROCR.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_RSI.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_SAR.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_SAREXT.R | 75 talib-0.9-3/talib/tests/testthat/test-ta_SMA.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_STDDEV.R | 45 talib-0.9-3/talib/tests/testthat/test-ta_STOCH.R | 53 talib-0.9-3/talib/tests/testthat/test-ta_STOCHF.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_STOCHRSI.R | 93 talib-0.9-3/talib/tests/testthat/test-ta_SUM.R | 43 talib-0.9-3/talib/tests/testthat/test-ta_T3.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_TEMA.R | 91 talib-0.9-3/talib/tests/testthat/test-ta_TRANGE.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_TRIMA.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_TRIX.R | 89 talib-0.9-3/talib/tests/testthat/test-ta_TYPPRICE.R | 72 talib-0.9-3/talib/tests/testthat/test-ta_ULTOSC.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_VAR.R | 43 talib-0.9-3/talib/tests/testthat/test-ta_VOLUME.R | 9 talib-0.9-3/talib/tests/testthat/test-ta_VWMA.R |only talib-0.9-3/talib/tests/testthat/test-ta_WCLPRICE.R | 72 talib-0.9-3/talib/tests/testthat/test-ta_WILLR.R | 71 talib-0.9-3/talib/tests/testthat/test-ta_WMA.R | 89 talib-0.9-3/talib/vignettes/candlestick.Rmd | 6 talib-0.9-3/talib/vignettes/charting.Rmd | 86 talib-0.9-3/talib/vignettes/talib.Rmd | 25 946 files changed, 174515 insertions(+), 88948 deletions(-)
Title: Utilities for Scoring and Assessing Predictions
Description: Facilitate the evaluation of forecasts in a convenient
framework based on data.table. It allows user to to check their forecasts
and diagnose issues, to visualise forecasts and missing data, to transform
data before scoring, to handle missing forecasts, to aggregate scores, and
to visualise the results of the evaluation. The package mostly focuses on
the evaluation of probabilistic forecasts and allows evaluating several
different forecast types and input formats. Find more information about the
package in the Vignettes as well as in the accompanying paper,
<doi:10.48550/arXiv.2205.07090>.
Author: Nikos Bosse [aut, cre] ,
Sam Abbott [aut] ,
Hugo Gruson [aut] ,
Johannes Bracher [ctb] ,
Toshiaki Asakura [ctb] ,
James Mba Azam [ctb] ,
Sebastian Funk [aut],
Michael Chirico [ctb]
Maintainer: Nikos Bosse <nikosbosse@gmail.com>
Diff between scoringutils versions 2.2.0 dated 2026-04-05 and 2.3.0 dated 2026-09-27
scoringutils-2.2.0/scoringutils/inst/doc/Deprecated-functions.R |only scoringutils-2.2.0/scoringutils/inst/doc/Deprecated-functions.Rmd |only scoringutils-2.2.0/scoringutils/inst/doc/Deprecated-functions.html |only scoringutils-2.2.0/scoringutils/inst/doc/Deprecated-visualisations.R |only scoringutils-2.2.0/scoringutils/inst/doc/Deprecated-visualisations.Rmd |only scoringutils-2.2.0/scoringutils/inst/doc/Deprecated-visualisations.html |only scoringutils-2.2.0/scoringutils/man/check_columns_present.Rd |only scoringutils-2.2.0/scoringutils/man/check_input_interval.Rd |only scoringutils-2.2.0/scoringutils/man/check_input_quantile.Rd |only scoringutils-2.2.0/scoringutils/man/check_input_sample.Rd |only scoringutils-2.2.0/scoringutils/man/test_columns_present.Rd |only scoringutils-2.2.0/scoringutils/vignettes/Deprecated-functions.Rmd |only scoringutils-2.2.0/scoringutils/vignettes/Deprecated-visualisations.Rmd |only scoringutils-2.3.0/scoringutils/DESCRIPTION | 13 scoringutils-2.3.0/scoringutils/MD5 | 283 +++++---- scoringutils-2.3.0/scoringutils/NAMESPACE | 264 +++++--- scoringutils-2.3.0/scoringutils/NEWS.md | 57 + scoringutils-2.3.0/scoringutils/R/check-input-helpers.R | 48 - scoringutils-2.3.0/scoringutils/R/class-forecast-binary.R | 6 scoringutils-2.3.0/scoringutils/R/class-forecast-multivariate-point.R | 11 scoringutils-2.3.0/scoringutils/R/class-forecast-multivariate-sample.R | 24 scoringutils-2.3.0/scoringutils/R/class-forecast-nominal.R | 23 scoringutils-2.3.0/scoringutils/R/class-forecast-ordinal.R | 23 scoringutils-2.3.0/scoringutils/R/class-forecast-point.R | 6 scoringutils-2.3.0/scoringutils/R/class-forecast-quantile.R | 48 + scoringutils-2.3.0/scoringutils/R/class-forecast-sample.R | 30 - scoringutils-2.3.0/scoringutils/R/class-forecast.R | 112 +++ scoringutils-2.3.0/scoringutils/R/class-scores.R | 21 scoringutils-2.3.0/scoringutils/R/documentation-templates.R | 4 scoringutils-2.3.0/scoringutils/R/filter-scores.R |only scoringutils-2.3.0/scoringutils/R/forecast-unit.R | 2 scoringutils-2.3.0/scoringutils/R/get-correlations.R | 6 scoringutils-2.3.0/scoringutils/R/get-coverage.R | 2 scoringutils-2.3.0/scoringutils/R/get-duplicate-forecasts.R | 123 +++- scoringutils-2.3.0/scoringutils/R/get-protected-columns.R | 1 scoringutils-2.3.0/scoringutils/R/impute-missing-scores.R |only scoringutils-2.3.0/scoringutils/R/metrics-binary.R | 26 scoringutils-2.3.0/scoringutils/R/metrics-interval-range.R | 36 - scoringutils-2.3.0/scoringutils/R/metrics-nominal.R | 7 scoringutils-2.3.0/scoringutils/R/metrics-ordinal.R | 9 scoringutils-2.3.0/scoringutils/R/metrics-quantile.R | 45 + scoringutils-2.3.0/scoringutils/R/metrics-sample.R | 52 + scoringutils-2.3.0/scoringutils/R/missing-scores-internal.R |only scoringutils-2.3.0/scoringutils/R/pairwise-comparisons.R | 235 ++++++- scoringutils-2.3.0/scoringutils/R/plot-discrimination.R |only scoringutils-2.3.0/scoringutils/R/plot-heatmap.R | 4 scoringutils-2.3.0/scoringutils/R/plot-wis.R | 6 scoringutils-2.3.0/scoringutils/R/score.R | 40 + scoringutils-2.3.0/scoringutils/R/summarise_scores.R | 28 scoringutils-2.3.0/scoringutils/R/theme-scoringutils.R | 2 scoringutils-2.3.0/scoringutils/R/transform-forecasts.R | 2 scoringutils-2.3.0/scoringutils/R/z-globalVariables.R | 4 scoringutils-2.3.0/scoringutils/README.md | 22 scoringutils-2.3.0/scoringutils/build/partial.rdb |binary scoringutils-2.3.0/scoringutils/build/vignette.rds |binary scoringutils-2.3.0/scoringutils/inst/doc/handling-missing-forecasts.R |only scoringutils-2.3.0/scoringutils/inst/doc/handling-missing-forecasts.Rmd |only scoringutils-2.3.0/scoringutils/inst/doc/handling-missing-forecasts.html |only scoringutils-2.3.0/scoringutils/inst/doc/scoring-multivariate-forecasts.R | 58 + scoringutils-2.3.0/scoringutils/inst/doc/scoring-multivariate-forecasts.Rmd | 92 +++ scoringutils-2.3.0/scoringutils/inst/doc/scoring-multivariate-forecasts.html | 177 +++++ scoringutils-2.3.0/scoringutils/inst/doc/scoring-rules.html | 7 scoringutils-2.3.0/scoringutils/inst/manuscript/scoringutils-paper.bib | 12 scoringutils-2.3.0/scoringutils/man/add_relative_skill.Rd | 13 scoringutils-2.3.0/scoringutils/man/as_forecast_binary.Rd | 18 scoringutils-2.3.0/scoringutils/man/as_forecast_doc_template.Rd | 4 scoringutils-2.3.0/scoringutils/man/as_forecast_generic.Rd | 2 scoringutils-2.3.0/scoringutils/man/as_forecast_multivariate_point.Rd | 18 scoringutils-2.3.0/scoringutils/man/as_forecast_multivariate_sample.Rd | 18 scoringutils-2.3.0/scoringutils/man/as_forecast_nominal.Rd | 18 scoringutils-2.3.0/scoringutils/man/as_forecast_ordinal.Rd | 18 scoringutils-2.3.0/scoringutils/man/as_forecast_point.Rd | 18 scoringutils-2.3.0/scoringutils/man/as_forecast_quantile.Rd | 18 scoringutils-2.3.0/scoringutils/man/as_forecast_sample.Rd | 18 scoringutils-2.3.0/scoringutils/man/assert_forecast_generic.Rd | 1 scoringutils-2.3.0/scoringutils/man/assert_strategy.Rd |only scoringutils-2.3.0/scoringutils/man/bias_sample.Rd | 2 scoringutils-2.3.0/scoringutils/man/build_missing_grid.Rd |only scoringutils-2.3.0/scoringutils/man/check_duplicates.Rd | 2 scoringutils-2.3.0/scoringutils/man/check_numeric_vector.Rd | 2 scoringutils-2.3.0/scoringutils/man/check_observed_constant.Rd |only scoringutils-2.3.0/scoringutils/man/compare_forecasts.Rd | 17 scoringutils-2.3.0/scoringutils/man/compare_scores.Rd |only scoringutils-2.3.0/scoringutils/man/dss_sample.Rd | 2 scoringutils-2.3.0/scoringutils/man/energy_score_multivariate.Rd | 2 scoringutils-2.3.0/scoringutils/man/ensure_mv_grouping.Rd | 2 scoringutils-2.3.0/scoringutils/man/ensure_sample_matrix.Rd |only scoringutils-2.3.0/scoringutils/man/figures/logo.png |binary scoringutils-2.3.0/scoringutils/man/filter_scores.Rd |only scoringutils-2.3.0/scoringutils/man/filter_to_include.Rd |only scoringutils-2.3.0/scoringutils/man/filter_to_intersection.Rd |only scoringutils-2.3.0/scoringutils/man/get_duplicate_forecasts.Rd | 39 + scoringutils-2.3.0/scoringutils/man/get_forecast_type_ids.Rd |only scoringutils-2.3.0/scoringutils/man/get_forecast_unit.Rd | 2 scoringutils-2.3.0/scoringutils/man/get_metrics.Rd | 20 scoringutils-2.3.0/scoringutils/man/get_metrics.forecast_binary.Rd | 20 scoringutils-2.3.0/scoringutils/man/get_metrics.forecast_multivariate_point.Rd | 20 scoringutils-2.3.0/scoringutils/man/get_metrics.forecast_multivariate_sample.Rd | 20 scoringutils-2.3.0/scoringutils/man/get_metrics.forecast_nominal.Rd | 20 scoringutils-2.3.0/scoringutils/man/get_metrics.forecast_ordinal.Rd | 20 scoringutils-2.3.0/scoringutils/man/get_metrics.forecast_point.Rd | 20 scoringutils-2.3.0/scoringutils/man/get_metrics.forecast_quantile.Rd | 20 scoringutils-2.3.0/scoringutils/man/get_metrics.forecast_sample.Rd | 20 scoringutils-2.3.0/scoringutils/man/get_metrics.scores.Rd | 20 scoringutils-2.3.0/scoringutils/man/get_protected_columns.Rd | 2 scoringutils-2.3.0/scoringutils/man/impute_mean_score.Rd |only scoringutils-2.3.0/scoringutils/man/impute_missing_scores.Rd |only scoringutils-2.3.0/scoringutils/man/impute_model_score.Rd |only scoringutils-2.3.0/scoringutils/man/impute_na_score.Rd |only scoringutils-2.3.0/scoringutils/man/impute_worst_score.Rd |only scoringutils-2.3.0/scoringutils/man/logs_sample.Rd | 6 scoringutils-2.3.0/scoringutils/man/new_forecast.Rd | 2 scoringutils-2.3.0/scoringutils/man/pairwise_comparison_one_group.Rd | 10 scoringutils-2.3.0/scoringutils/man/pivot_scores.Rd |only scoringutils-2.3.0/scoringutils/man/plot_discrimination.Rd |only scoringutils-2.3.0/scoringutils/man/prepare_forecast_for_scoring.Rd |only scoringutils-2.3.0/scoringutils/man/print.scores.Rd |only scoringutils-2.3.0/scoringutils/man/quantile_score.Rd | 5 scoringutils-2.3.0/scoringutils/man/sample_to_interval_long.Rd | 2 scoringutils-2.3.0/scoringutils/man/scoring-functions-binary.Rd | 6 scoringutils-2.3.0/scoringutils/man/scoring-functions-nominal.Rd | 4 scoringutils-2.3.0/scoringutils/man/scoringutils-package.Rd | 1 scoringutils-2.3.0/scoringutils/man/set_forecast_unit.Rd | 2 scoringutils-2.3.0/scoringutils/man/set_grouping.Rd | 2 scoringutils-2.3.0/scoringutils/man/summarise_scores.Rd | 3 scoringutils-2.3.0/scoringutils/man/variogram_score_multivariate.Rd | 2 scoringutils-2.3.0/scoringutils/man/wis.Rd | 9 scoringutils-2.3.0/scoringutils/tests/testthat/_snaps/class-forecast-multivariate-sample.md | 17 scoringutils-2.3.0/scoringutils/tests/testthat/_snaps/pairwise_comparison/plot-pairwise-comparison-pval.svg | 8 scoringutils-2.3.0/scoringutils/tests/testthat/_snaps/pairwise_comparison/plot-pairwise-comparison.svg | 8 scoringutils-2.3.0/scoringutils/tests/testthat/_snaps/plot_discrimination |only scoringutils-2.3.0/scoringutils/tests/testthat/_snaps/plot_heatmap/plot-heatmap.svg | 8 scoringutils-2.3.0/scoringutils/tests/testthat/_snaps/plot_wis/plot-wis-flip.svg | 12 scoringutils-2.3.0/scoringutils/tests/testthat/_snaps/plot_wis/plot-wis-no-relative.svg | 12 scoringutils-2.3.0/scoringutils/tests/testthat/_snaps/plot_wis/plot-wis.svg | 12 scoringutils-2.3.0/scoringutils/tests/testthat/test-check-input-helpers.R | 36 - scoringutils-2.3.0/scoringutils/tests/testthat/test-class-forecast-binary.R | 21 scoringutils-2.3.0/scoringutils/tests/testthat/test-class-forecast-multivariate-sample.R | 30 - scoringutils-2.3.0/scoringutils/tests/testthat/test-class-forecast-nominal.R | 38 + scoringutils-2.3.0/scoringutils/tests/testthat/test-class-forecast-ordinal.R | 60 ++ scoringutils-2.3.0/scoringutils/tests/testthat/test-class-forecast-quantile.R | 162 +++++ scoringutils-2.3.0/scoringutils/tests/testthat/test-class-forecast-sample.R | 19 scoringutils-2.3.0/scoringutils/tests/testthat/test-class-forecast.R | 298 +++++++++- scoringutils-2.3.0/scoringutils/tests/testthat/test-filter-scores.R |only scoringutils-2.3.0/scoringutils/tests/testthat/test-get-duplicate-forecasts.R | 202 ++++-- scoringutils-2.3.0/scoringutils/tests/testthat/test-get-protected-columns.R | 4 scoringutils-2.3.0/scoringutils/tests/testthat/test-impute-missing-scores.R |only scoringutils-2.3.0/scoringutils/tests/testthat/test-inputs-scoring-functions.R | 20 scoringutils-2.3.0/scoringutils/tests/testthat/test-metrics-binary.R | 58 + scoringutils-2.3.0/scoringutils/tests/testthat/test-metrics-interval-range.R | 12 scoringutils-2.3.0/scoringutils/tests/testthat/test-metrics-nominal.R | 28 scoringutils-2.3.0/scoringutils/tests/testthat/test-metrics-ordinal.R | 16 scoringutils-2.3.0/scoringutils/tests/testthat/test-metrics-quantile.R | 149 ++++- scoringutils-2.3.0/scoringutils/tests/testthat/test-metrics-sample.R | 58 + scoringutils-2.3.0/scoringutils/tests/testthat/test-pairwise_comparison.R | 180 +++++- scoringutils-2.3.0/scoringutils/tests/testthat/test-plot_discrimination.R |only scoringutils-2.3.0/scoringutils/tests/testthat/test-plot_wis.R | 2 scoringutils-2.3.0/scoringutils/tests/testthat/test-score.R | 27 scoringutils-2.3.0/scoringutils/tests/testthat/test-summarise_scores.R | 70 ++ scoringutils-2.3.0/scoringutils/vignettes/Deprecated-functions.R |only scoringutils-2.3.0/scoringutils/vignettes/Deprecated-functions.html |only scoringutils-2.3.0/scoringutils/vignettes/Deprecated-visualisations.R |only scoringutils-2.3.0/scoringutils/vignettes/Deprecated-visualisations.html |only scoringutils-2.3.0/scoringutils/vignettes/handling-missing-forecasts.Rmd |only scoringutils-2.3.0/scoringutils/vignettes/scoring-multivariate-forecasts.Rmd | 92 +++ scoringutils-2.3.0/scoringutils/vignettes/scoring-rules/scoringutils-package.bib | 2 166 files changed, 3121 insertions(+), 1001 deletions(-)
Title: Quantile G-Computation
Description: G-computation for a set of time-fixed exposures with
quantile-based basis functions, possibly under linearity and
homogeneity assumptions. This approach estimates a regression line
corresponding to the expected change in the outcome (on the link
basis) given a simultaneous increase in the quantile-based category
for all exposures. Works with continuous, binary, and right-censored
time-to-event outcomes. Reference: Alexander P. Keil, Jessie P.
Buckley, Katie M. OBrien, Kelly K. Ferguson, Shanshan Zhao, and
Alexandra J. White (2019) A quantile-based g-computation approach to
addressing the effects of exposure mixtures; <doi:10.1289/EHP5838>.
Author: Alexander Keil [aut, cre]
Maintainer: Alexander Keil <alex.keil@nih.gov>
Diff between qgcomp versions 2.19.5 dated 2026-09-03 and 2.19.6 dated 2026-09-27
DESCRIPTION | 10 ++++----- MD5 | 14 ++++++------- NEWS.md | 10 +++++++++ R/base_plots.R | 4 +-- README.md | 2 - inst/doc/qgcomp-advanced-vignette.html | 34 ++++++++++++++++----------------- inst/doc/qgcomp-basic-vignette.html | 12 +++++------ inst/doc/qgcomp-vignette.html | 4 +-- 8 files changed, 50 insertions(+), 40 deletions(-)
Title: JSON Graphics Device
Description: A graphics device that translates R plotting operations into JSON
and streams them over a local connection to an external display
application. The device acts as a pure recorder with no rendering
dependencies; all rendering occurs in that application (e.g. a 'VS Code'
extension or a web browser). Official display applications are available
from the project homepage.
Author: Grant McDermott [aut, cre],
Tatsuya Shima [aut],
Dave Gamble [cph] ,
cJSON contributors [cph]
Maintainer: Grant McDermott <contact@grantmcdermott.com>
Diff between jgd versions 0.1.1 dated 2026-06-30 and 0.2.0 dated 2026-09-27
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- NEWS.md | 13 +++++++++++++ R/jgd.R | 4 ++-- README.md |only man/jgd-package.Rd | 4 ++-- man/jgd.Rd | 4 ++-- 7 files changed, 31 insertions(+), 17 deletions(-)
Title: Fast Interactive Data Analysis Pipelines
Description: A lightweight and intuitive framework for building interactive data
analysis pipelines. You add R functions one by one, and 'pipeflow'
wires them into a pipeline that stays consistent as you go. Modify,
remove, or insert steps at any stage, manage all parameters in one
place, fast execution (C++-powered DAG) for interactive use and Shiny
backends.
Author: Roman Pahl [aut, cre]
Maintainer: Roman Pahl <roman.pahl@gmail.com>
Diff between pipeflow versions 0.3.0 dated 2026-06-15 and 0.4.0 dated 2026-09-27
pipeflow-0.3.0/pipeflow/R/aliases.R |only pipeflow-0.3.0/pipeflow/R/param.R |only pipeflow-0.3.0/pipeflow/R/pipeline.R |only pipeflow-0.3.0/pipeflow/R/pipelineR6.R |only pipeflow-0.3.0/pipeflow/R/pipeline_helpers.R |only pipeflow-0.3.0/pipeflow/inst/doc/v03-combine-pipelines.R |only pipeflow-0.3.0/pipeflow/inst/doc/v03-combine-pipelines.Rmd |only pipeflow-0.3.0/pipeflow/inst/doc/v03-combine-pipelines.html |only pipeflow-0.3.0/pipeflow/inst/doc/v05-split-map-reduce.R |only pipeflow-0.3.0/pipeflow/inst/doc/v05-split-map-reduce.Rmd |only pipeflow-0.3.0/pipeflow/inst/doc/v05-split-map-reduce.html |only pipeflow-0.3.0/pipeflow/man/Extract.pipeflow_pip.Rd |only pipeflow-0.3.0/pipeflow/man/Pipeline.Rd |only pipeflow-0.3.0/pipeflow/man/length.pipeflow.Rd |only pipeflow-0.3.0/pipeflow/man/pip_add_from.Rd |only pipeflow-0.3.0/pipeflow/man/pip_bind.Rd |only pipeflow-0.3.0/pipeflow/man/pip_collect_out.Rd |only pipeflow-0.3.0/pipeflow/man/pip_get_graph.Rd |only pipeflow-0.3.0/pipeflow/man/pip_get_params.Rd |only pipeflow-0.3.0/pipeflow/man/pip_has_step.Rd |only pipeflow-0.3.0/pipeflow/man/pip_unlock.Rd |only pipeflow-0.3.0/pipeflow/man/pip_untag.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_add.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_append.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_append_to_step_names.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_clone.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_collect_out.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_discard_steps.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_get_data.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_get_depends.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_get_graph.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_get_out.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_get_params.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_insert.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_length.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_lock_unlock.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_new.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_pop_step.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_print.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_remove_step.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_rename_step.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_replace_step.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_reset.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_run.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_run_step.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_set_data.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_set_data_split.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_set_keep_out.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_set_params.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_set_params_at_step.Rd |only pipeflow-0.3.0/pipeflow/man/pipe_split.Rd |only pipeflow-0.3.0/pipeflow/man/set_log_layout.Rd |only pipeflow-0.3.0/pipeflow/man/step_info.Rd |only pipeflow-0.3.0/pipeflow/tests/testthat/helper_test_data.R |only pipeflow-0.3.0/pipeflow/tests/testthat/test_aliases.R |only pipeflow-0.3.0/pipeflow/tests/testthat/test_param.R |only pipeflow-0.3.0/pipeflow/tests/testthat/test_pipeflow-package.R |only pipeflow-0.3.0/pipeflow/tests/testthat/test_pipeline.R |only pipeflow-0.3.0/pipeflow/tests/testthat/test_pipelineR6.R |only pipeflow-0.3.0/pipeflow/tests/testthat/test_pipeline_helper.R |only pipeflow-0.3.0/pipeflow/vignettes/v03-combine-pipelines.Rmd |only pipeflow-0.3.0/pipeflow/vignettes/v05-split-map-reduce.Rmd |only pipeflow-0.4.0/pipeflow/DESCRIPTION | 9 pipeflow-0.4.0/pipeflow/MD5 | 182 pipeflow-0.4.0/pipeflow/NAMESPACE | 120 pipeflow-0.4.0/pipeflow/NEWS.md | 170 pipeflow-0.4.0/pipeflow/R/RcppExports.R | 222 pipeflow-0.4.0/pipeflow/R/generic.pipeflow.R |only pipeflow-0.4.0/pipeflow/R/log.R | 99 pipeflow-0.4.0/pipeflow/R/pipeflow-package.R | 45 pipeflow-0.4.0/pipeflow/R/pipeflow.R |only pipeflow-0.4.0/pipeflow/R/print.pipeflow.R |only pipeflow-0.4.0/pipeflow/R/utils.R | 73 pipeflow-0.4.0/pipeflow/R/zzz.R | 19 pipeflow-0.4.0/pipeflow/build/vignette.rds |binary pipeflow-0.4.0/pipeflow/inst/doc/v01-get-started.R | 326 pipeflow-0.4.0/pipeflow/inst/doc/v01-get-started.Rmd | 707 pipeflow-0.4.0/pipeflow/inst/doc/v01-get-started.html |12087 +++++----- pipeflow-0.4.0/pipeflow/inst/doc/v02-modify-pipeline.R | 322 pipeflow-0.4.0/pipeflow/inst/doc/v02-modify-pipeline.Rmd | 502 pipeflow-0.4.0/pipeflow/inst/doc/v02-modify-pipeline.html | 1065 pipeflow-0.4.0/pipeflow/inst/doc/v03a-combine-pipelines.R |only pipeflow-0.4.0/pipeflow/inst/doc/v03a-combine-pipelines.Rmd |only pipeflow-0.4.0/pipeflow/inst/doc/v03a-combine-pipelines.html |only pipeflow-0.4.0/pipeflow/inst/doc/v03b-pipeline-views.R |only pipeflow-0.4.0/pipeflow/inst/doc/v03b-pipeline-views.Rmd |only pipeflow-0.4.0/pipeflow/inst/doc/v03b-pipeline-views.html |only pipeflow-0.4.0/pipeflow/inst/doc/v04-collect-output.R | 221 pipeflow-0.4.0/pipeflow/inst/doc/v04-collect-output.Rmd | 395 pipeflow-0.4.0/pipeflow/inst/doc/v04-collect-output.html | 1170 pipeflow-0.4.0/pipeflow/inst/doc/v05a-split-map-reduce.R |only pipeflow-0.4.0/pipeflow/inst/doc/v05a-split-map-reduce.Rmd |only pipeflow-0.4.0/pipeflow/inst/doc/v05a-split-map-reduce.html |only pipeflow-0.4.0/pipeflow/inst/doc/v05b-nested-pipeline.R |only pipeflow-0.4.0/pipeflow/inst/doc/v05b-nested-pipeline.Rmd |only pipeflow-0.4.0/pipeflow/inst/doc/v05b-nested-pipeline.html |only pipeflow-0.4.0/pipeflow/inst/doc/v06-self-modify-pipeline.R | 393 pipeflow-0.4.0/pipeflow/inst/doc/v06-self-modify-pipeline.Rmd | 748 pipeflow-0.4.0/pipeflow/inst/doc/v06-self-modify-pipeline.html | 1558 - pipeflow-0.4.0/pipeflow/man/Extract.pipeflow.Rd |only pipeflow-0.4.0/pipeflow/man/dim.pipeflow.Rd |only pipeflow-0.4.0/pipeflow/man/pip_add.Rd | 216 pipeflow-0.4.0/pipeflow/man/pip_clone.Rd | 72 pipeflow-0.4.0/pipeflow/man/pip_collect.Rd |only pipeflow-0.4.0/pipeflow/man/pip_data.Rd |only pipeflow-0.4.0/pipeflow/man/pip_graph.Rd |only pipeflow-0.4.0/pipeflow/man/pip_lock.Rd | 84 pipeflow-0.4.0/pipeflow/man/pip_new.Rd | 62 pipeflow-0.4.0/pipeflow/man/pip_remove.Rd | 102 pipeflow-0.4.0/pipeflow/man/pip_rename.Rd | 75 pipeflow-0.4.0/pipeflow/man/pip_replace.Rd | 120 pipeflow-0.4.0/pipeflow/man/pip_reset.Rd |only pipeflow-0.4.0/pipeflow/man/pip_run.Rd | 216 pipeflow-0.4.0/pipeflow/man/pip_set_params.Rd | 94 pipeflow-0.4.0/pipeflow/man/pip_tag.Rd | 79 pipeflow-0.4.0/pipeflow/man/pip_view.Rd | 153 pipeflow-0.4.0/pipeflow/man/pipeflow-operators.Rd |only pipeflow-0.4.0/pipeflow/man/pipeflow-package.Rd | 62 pipeflow-0.4.0/pipeflow/man/print.Rd | 136 pipeflow-0.4.0/pipeflow/man/rbind.pipeflow.Rd |only pipeflow-0.4.0/pipeflow/tests/testthat.R | 8 pipeflow-0.4.0/pipeflow/tests/testthat/helper_dag.R | 130 pipeflow-0.4.0/pipeflow/tests/testthat/helper_general.R | 38 pipeflow-0.4.0/pipeflow/tests/testthat/test_RcppExports.R | 872 pipeflow-0.4.0/pipeflow/tests/testthat/test_generic.pipeflow.R |only pipeflow-0.4.0/pipeflow/tests/testthat/test_log.R | 169 pipeflow-0.4.0/pipeflow/tests/testthat/test_pipeflow.R |only pipeflow-0.4.0/pipeflow/tests/testthat/test_print.pipeflow.R |only pipeflow-0.4.0/pipeflow/tests/testthat/test_utils.R | 336 pipeflow-0.4.0/pipeflow/vignettes/articles/v07-vs-targets.Rmd | 852 pipeflow-0.4.0/pipeflow/vignettes/v01-get-started.Rmd | 707 pipeflow-0.4.0/pipeflow/vignettes/v02-modify-pipeline.Rmd | 502 pipeflow-0.4.0/pipeflow/vignettes/v03a-combine-pipelines.Rmd |only pipeflow-0.4.0/pipeflow/vignettes/v03b-pipeline-views.Rmd |only pipeflow-0.4.0/pipeflow/vignettes/v04-collect-output.Rmd | 395 pipeflow-0.4.0/pipeflow/vignettes/v05a-split-map-reduce.Rmd |only pipeflow-0.4.0/pipeflow/vignettes/v05b-nested-pipeline.Rmd |only pipeflow-0.4.0/pipeflow/vignettes/v06-self-modify-pipeline.Rmd | 748 138 files changed, 12934 insertions(+), 13727 deletions(-)
Title: Compare Models with Cross-Validated Log-Likelihood
Description: An implementation of the cross-validated difference in means (CVDM) test by Desmarais and Harden (2014) <doi:10.1007/s11135-013-9884-7> (see also Harden and Desmarais, 2011 <doi:10.1177/1532440011408929>) and the cross-validated median fit (CVMF) test by Desmarais and Harden (2012) <doi:10.1093/pan/mpr042>. These tests use leave-one-out cross-validated log-likelihoods to assist in selecting among model estimations. You can also utilize data from Golder (2010) <doi:10.1177/0010414009341714> and Joshi & Mason (2008) <doi:10.1177/0022343308096155> that are included to facilitate examples from real-world analysis.
Author: Shana Scogin [aut, cre] ,
Sarah Petersen [aut],
Jeff Harden [aut],
Bruce A. Desmarais [aut]
Maintainer: Shana Scogin <shanarscogin@gmail.com>
Diff between modeLLtest versions 1.0.5 dated 2025-10-11 and 1.0.6 dated 2026-09-27
DESCRIPTION | 8 ++-- MD5 | 26 +++++++++------ NAMESPACE | 12 +++++++ NEWS.md | 16 +++++++++ R/cvmf.R | 63 +++++++++++++++++++++++++++++++------- R/print.cvdm.R | 6 +-- R/print.cvll.R | 4 +- R/print.cvlldiff.R | 4 +- R/print.cvmf.R | 16 ++++----- R/summary.R |only build/partial.rdb |binary inst/doc/getting_started.html | 18 +++++----- man/summary.modeLLtest.Rd |only tests/testthat/test_cvmf.R | 18 ++++++++++ tests/testthat/test_cvmf_values.R |only tests/testthat/test_summary.R |only 16 files changed, 142 insertions(+), 49 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-19 0.6.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-16 2.0.5
2024-08-21 2.0.4
2023-03-17 2.0.3
2022-11-25 2.0.2
2022-07-08 2.0.1
2022-06-17 2.0.0
2021-06-10 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-06 0.2.1
2025-03-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-16 0.6.0
2018-07-20 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-06-08 1.0.0
2026-05-05 0.8.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-08 2.3.1
2023-11-03 2.2.2
2022-01-07 2.1.1
2021-07-08 2.0.8
2021-04-13 2.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-06-08 1.4.1
2026-03-22 1.4.0
2024-08-16 1.3.0
2023-08-21 1.2.1
2022-07-25 1.2.0
2022-05-04 1.1.8
2022-04-28 1.1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-06-22 1.2.0
2025-09-16 1.0.0
2023-04-11 0.3.1
2023-03-12 0.3.0
2022-12-14 0.2.0
2022-11-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-21 0.1.5
2024-03-19 0.1.4
2023-01-05 0.1.3
2022-06-23 0.1.2
2021-10-12 0.1.1
2021-04-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-09-04 0.1.1
2026-04-15 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-29 0.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-09-03 0.1.1
2025-05-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-09-13 0.4.0
2026-06-01 0.3.0
2026-01-12 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-26 2.1.2
2024-05-17 2.1.1
2021-01-10 2.0-1
2013-05-03 2.0
2007-01-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-05 0.1.1
2020-11-03 0.1.0
Title: A Common API to Modeling and Analysis Functions
Description: A common interface is provided to allow users to specify a
model without having to remember the different argument names across
different functions or computational engines (e.g. 'R', 'Spark',
'Stan', 'H2O', etc).
Author: Max Kuhn [cre, aut] ,
Davis Vaughan [aut],
Emil Hvitfeldt [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between parsnip versions 1.6.0 dated 2026-05-14 and 1.6.1 dated 2026-09-27
parsnip-1.6.0/parsnip/tests/testthat/_snaps/mlp_nnet.md |only parsnip-1.6.1/parsnip/DESCRIPTION | 11 parsnip-1.6.1/parsnip/MD5 | 805 +++++----- parsnip-1.6.1/parsnip/NAMESPACE | 189 +- parsnip-1.6.1/parsnip/NEWS.md | 56 parsnip-1.6.1/parsnip/R/aaa_archive.R | 349 ++-- parsnip-1.6.1/parsnip/R/aaa_models.R | 51 parsnip-1.6.1/parsnip/R/aaa_multi_predict.R | 16 parsnip-1.6.1/parsnip/R/arguments.R | 16 parsnip-1.6.1/parsnip/R/augment.R | 27 parsnip-1.6.1/parsnip/R/bart.R | 49 parsnip-1.6.1/parsnip/R/boost_tree.R | 46 parsnip-1.6.1/parsnip/R/boost_tree_data.R | 2 parsnip-1.6.1/parsnip/R/condense_control.R | 3 parsnip-1.6.1/parsnip/R/control_parsnip.R | 5 parsnip-1.6.1/parsnip/R/engine_docs.R | 16 parsnip-1.6.1/parsnip/R/engines.R | 22 parsnip-1.6.1/parsnip/R/fit.R | 122 + parsnip-1.6.1/parsnip/R/fit_helpers.R | 88 - parsnip-1.6.1/parsnip/R/gen_additive_mod_data.R | 18 parsnip-1.6.1/parsnip/R/glm_grouped.R | 5 parsnip-1.6.1/parsnip/R/glmnet-engines.R | 80 parsnip-1.6.1/parsnip/R/linear_reg.R | 4 parsnip-1.6.1/parsnip/R/logistic_reg.R | 32 parsnip-1.6.1/parsnip/R/mars_data.R | 5 parsnip-1.6.1/parsnip/R/misc.R | 137 + parsnip-1.6.1/parsnip/R/mlp.R | 22 parsnip-1.6.1/parsnip/R/mlp_data.R | 40 parsnip-1.6.1/parsnip/R/nearest_neighbor.R | 2 parsnip-1.6.1/parsnip/R/nullmodel.R | 102 - parsnip-1.6.1/parsnip/R/nullmodel_data.R | 49 parsnip-1.6.1/parsnip/R/ordinal_reg.R | 169 +- parsnip-1.6.1/parsnip/R/poisson_reg.R | 4 parsnip-1.6.1/parsnip/R/predict.R | 40 parsnip-1.6.1/parsnip/R/predict_raw.R | 6 parsnip-1.6.1/parsnip/R/predict_survival.R | 12 parsnip-1.6.1/parsnip/R/proportional_hazards.R | 4 parsnip-1.6.1/parsnip/R/rand_forest_data.R | 2 parsnip-1.6.1/parsnip/R/rand_forest_randomForestSRC.R |only parsnip-1.6.1/parsnip/R/sparsevctrs.R | 5 parsnip-1.6.1/parsnip/R/survival-censoring-weights.R | 41 parsnip-1.6.1/parsnip/R/survival-helpers.R | 7 parsnip-1.6.1/parsnip/R/svm_linear_data.R | 2 parsnip-1.6.1/parsnip/R/tabular_auto_int.R |only parsnip-1.6.1/parsnip/R/tabular_auto_int_brulee.R |only parsnip-1.6.1/parsnip/R/tabular_chronos.R |only parsnip-1.6.1/parsnip/R/tabular_chronos_brulee.R |only parsnip-1.6.1/parsnip/R/tabular_icl.R |only parsnip-1.6.1/parsnip/R/tabular_icl_brulee.R |only parsnip-1.6.1/parsnip/R/tabular_pfn.R |only parsnip-1.6.1/parsnip/R/tabular_pfn_tabpfn.R |only parsnip-1.6.1/parsnip/R/tabular_resnet.R |only parsnip-1.6.1/parsnip/R/tabular_resnet_brulee.R |only parsnip-1.6.1/parsnip/R/tabular_rln.R |only parsnip-1.6.1/parsnip/R/tabular_rln_brulee.R |only parsnip-1.6.1/parsnip/R/tabular_saint.R |only parsnip-1.6.1/parsnip/R/tabular_saint_brulee.R |only parsnip-1.6.1/parsnip/R/translate.R | 20 parsnip-1.6.1/parsnip/README.md | 6 parsnip-1.6.1/parsnip/build/stage23.rdb |only parsnip-1.6.1/parsnip/build/vignette.rds |binary parsnip-1.6.1/parsnip/inst/models.tsv | 17 parsnip-1.6.1/parsnip/man/C5_rules.Rd | 6 parsnip-1.6.1/parsnip/man/add_on_exports.Rd | 3 parsnip-1.6.1/parsnip/man/augment.Rd | 13 parsnip-1.6.1/parsnip/man/auto_ml.Rd | 6 parsnip-1.6.1/parsnip/man/autoplot.model_fit.Rd | 2 parsnip-1.6.1/parsnip/man/bag_mars.Rd | 6 parsnip-1.6.1/parsnip/man/bag_mlp.Rd | 6 parsnip-1.6.1/parsnip/man/bag_tree.Rd | 6 parsnip-1.6.1/parsnip/man/bart.Rd | 6 parsnip-1.6.1/parsnip/man/boost_tree.Rd | 6 parsnip-1.6.1/parsnip/man/cubist_rules.Rd | 6 parsnip-1.6.1/parsnip/man/decision_tree.Rd | 6 parsnip-1.6.1/parsnip/man/details_C5_rules_C5.0.Rd | 4 parsnip-1.6.1/parsnip/man/details_auto_ml_h2o.Rd | 8 parsnip-1.6.1/parsnip/man/details_bag_mars_earth.Rd | 9 parsnip-1.6.1/parsnip/man/details_bag_mlp_nnet.Rd | 2 parsnip-1.6.1/parsnip/man/details_bag_tree_C5.0.Rd | 11 parsnip-1.6.1/parsnip/man/details_bag_tree_rpart.Rd | 22 parsnip-1.6.1/parsnip/man/details_bart_dbarts.Rd | 2 parsnip-1.6.1/parsnip/man/details_boost_tree_C5.0.Rd | 2 parsnip-1.6.1/parsnip/man/details_boost_tree_catboost.Rd | 37 parsnip-1.6.1/parsnip/man/details_boost_tree_h2o.Rd | 12 parsnip-1.6.1/parsnip/man/details_boost_tree_lightgbm.Rd | 16 parsnip-1.6.1/parsnip/man/details_boost_tree_mboost.Rd | 15 parsnip-1.6.1/parsnip/man/details_boost_tree_spark.Rd | 2 parsnip-1.6.1/parsnip/man/details_boost_tree_xgboost.Rd | 18 parsnip-1.6.1/parsnip/man/details_cubist_rules_Cubist.Rd | 6 parsnip-1.6.1/parsnip/man/details_decision_tree_C5.0.Rd | 2 parsnip-1.6.1/parsnip/man/details_decision_tree_partykit.Rd | 18 parsnip-1.6.1/parsnip/man/details_decision_tree_rpart.Rd | 2 parsnip-1.6.1/parsnip/man/details_decision_tree_rpartScore.Rd | 6 parsnip-1.6.1/parsnip/man/details_decision_tree_spark.Rd | 2 parsnip-1.6.1/parsnip/man/details_discrim_flexible_earth.Rd | 2 parsnip-1.6.1/parsnip/man/details_discrim_linear_mda.Rd | 2 parsnip-1.6.1/parsnip/man/details_discrim_linear_sda.Rd | 6 parsnip-1.6.1/parsnip/man/details_gen_additive_mod_mgcv.Rd | 22 parsnip-1.6.1/parsnip/man/details_gen_additive_mod_vgam.Rd | 10 parsnip-1.6.1/parsnip/man/details_linear_reg_gee.Rd | 2 parsnip-1.6.1/parsnip/man/details_linear_reg_glm.Rd | 2 parsnip-1.6.1/parsnip/man/details_linear_reg_glmer.Rd | 5 parsnip-1.6.1/parsnip/man/details_linear_reg_glmnet.Rd | 2 parsnip-1.6.1/parsnip/man/details_linear_reg_gls.Rd | 2 parsnip-1.6.1/parsnip/man/details_linear_reg_h2o.Rd | 8 parsnip-1.6.1/parsnip/man/details_linear_reg_keras.Rd | 2 parsnip-1.6.1/parsnip/man/details_linear_reg_lm.Rd | 2 parsnip-1.6.1/parsnip/man/details_linear_reg_lme.Rd | 3 parsnip-1.6.1/parsnip/man/details_linear_reg_lmer.Rd | 5 parsnip-1.6.1/parsnip/man/details_linear_reg_quantreg.Rd | 2 parsnip-1.6.1/parsnip/man/details_linear_reg_spark.Rd | 2 parsnip-1.6.1/parsnip/man/details_linear_reg_stan.Rd | 4 parsnip-1.6.1/parsnip/man/details_linear_reg_stan_glmer.Rd | 5 parsnip-1.6.1/parsnip/man/details_logistic_reg_gee.Rd | 3 parsnip-1.6.1/parsnip/man/details_logistic_reg_glm.Rd | 2 parsnip-1.6.1/parsnip/man/details_logistic_reg_glmer.Rd | 5 parsnip-1.6.1/parsnip/man/details_logistic_reg_glmnet.Rd | 2 parsnip-1.6.1/parsnip/man/details_logistic_reg_h2o.Rd | 14 parsnip-1.6.1/parsnip/man/details_logistic_reg_keras.Rd | 2 parsnip-1.6.1/parsnip/man/details_logistic_reg_spark.Rd | 2 parsnip-1.6.1/parsnip/man/details_logistic_reg_stan.Rd | 4 parsnip-1.6.1/parsnip/man/details_logistic_reg_stan_glmer.Rd | 5 parsnip-1.6.1/parsnip/man/details_mars_earth.Rd | 5 parsnip-1.6.1/parsnip/man/details_mlp_brulee_two_layer.Rd | 2 parsnip-1.6.1/parsnip/man/details_mlp_h2o.Rd | 12 parsnip-1.6.1/parsnip/man/details_mlp_nnet.Rd | 2 parsnip-1.6.1/parsnip/man/details_mlp_qrnn.Rd | 16 parsnip-1.6.1/parsnip/man/details_multinom_reg_glmnet.Rd | 2 parsnip-1.6.1/parsnip/man/details_multinom_reg_h2o.Rd | 8 parsnip-1.6.1/parsnip/man/details_multinom_reg_keras.Rd | 2 parsnip-1.6.1/parsnip/man/details_multinom_reg_spark.Rd | 2 parsnip-1.6.1/parsnip/man/details_naive_Bayes_h2o.Rd | 8 parsnip-1.6.1/parsnip/man/details_ordinal_reg_ordinalNet.Rd | 6 parsnip-1.6.1/parsnip/man/details_ordinal_reg_polr.Rd | 15 parsnip-1.6.1/parsnip/man/details_ordinal_reg_vglm.Rd | 2 parsnip-1.6.1/parsnip/man/details_poisson_reg_gee.Rd | 2 parsnip-1.6.1/parsnip/man/details_poisson_reg_glm.Rd | 4 parsnip-1.6.1/parsnip/man/details_poisson_reg_glmer.Rd | 4 parsnip-1.6.1/parsnip/man/details_poisson_reg_glmnet.Rd | 2 parsnip-1.6.1/parsnip/man/details_poisson_reg_h2o.Rd | 6 parsnip-1.6.1/parsnip/man/details_poisson_reg_hurdle.Rd | 8 parsnip-1.6.1/parsnip/man/details_poisson_reg_stan.Rd | 4 parsnip-1.6.1/parsnip/man/details_poisson_reg_stan_glmer.Rd | 4 parsnip-1.6.1/parsnip/man/details_poisson_reg_zeroinfl.Rd | 8 parsnip-1.6.1/parsnip/man/details_proportional_hazards_glmnet.Rd | 2 parsnip-1.6.1/parsnip/man/details_proportional_hazards_survival.Rd | 5 parsnip-1.6.1/parsnip/man/details_rand_forest_aorsf.Rd | 24 parsnip-1.6.1/parsnip/man/details_rand_forest_grf.Rd | 19 parsnip-1.6.1/parsnip/man/details_rand_forest_h2o.Rd | 12 parsnip-1.6.1/parsnip/man/details_rand_forest_ordinalForest.Rd | 21 parsnip-1.6.1/parsnip/man/details_rand_forest_partykit.Rd | 18 parsnip-1.6.1/parsnip/man/details_rand_forest_randomForest.Rd | 2 parsnip-1.6.1/parsnip/man/details_rand_forest_randomForestSRC.Rd |only parsnip-1.6.1/parsnip/man/details_rand_forest_ranger.Rd | 67 parsnip-1.6.1/parsnip/man/details_rand_forest_spark.Rd | 2 parsnip-1.6.1/parsnip/man/details_rule_fit_h2o.Rd | 14 parsnip-1.6.1/parsnip/man/details_rule_fit_xrf.Rd | 14 parsnip-1.6.1/parsnip/man/details_survival_reg_flexsurv.Rd | 2 parsnip-1.6.1/parsnip/man/details_survival_reg_flexsurvspline.Rd | 2 parsnip-1.6.1/parsnip/man/details_survival_reg_survival.Rd | 5 parsnip-1.6.1/parsnip/man/details_svm_linear_LiblineaR.Rd | 4 parsnip-1.6.1/parsnip/man/details_svm_rbf_kernlab.Rd | 22 parsnip-1.6.1/parsnip/man/details_tabular_auto_int_brulee.Rd |only parsnip-1.6.1/parsnip/man/details_tabular_chronos_brulee.Rd |only parsnip-1.6.1/parsnip/man/details_tabular_icl_brulee.Rd |only parsnip-1.6.1/parsnip/man/details_tabular_pfn_tabpfn.Rd |only parsnip-1.6.1/parsnip/man/details_tabular_resnet_brulee.Rd |only parsnip-1.6.1/parsnip/man/details_tabular_rln_brulee.Rd |only parsnip-1.6.1/parsnip/man/details_tabular_saint_brulee.Rd |only parsnip-1.6.1/parsnip/man/discrim_flexible.Rd | 6 parsnip-1.6.1/parsnip/man/discrim_linear.Rd | 6 parsnip-1.6.1/parsnip/man/discrim_quad.Rd | 6 parsnip-1.6.1/parsnip/man/discrim_regularized.Rd | 6 parsnip-1.6.1/parsnip/man/dot-extract_surv_status.Rd | 3 parsnip-1.6.1/parsnip/man/dot-extract_surv_time.Rd | 3 parsnip-1.6.1/parsnip/man/extension-check-helpers.Rd | 2 parsnip-1.6.1/parsnip/man/fit.Rd | 8 parsnip-1.6.1/parsnip/man/gen_additive_mod.Rd | 6 parsnip-1.6.1/parsnip/man/glmnet-details.Rd | 2 parsnip-1.6.1/parsnip/man/glmnet_helpers.Rd | 2 parsnip-1.6.1/parsnip/man/linear_reg.Rd | 6 parsnip-1.6.1/parsnip/man/logistic_reg.Rd | 6 parsnip-1.6.1/parsnip/man/mars.Rd | 6 parsnip-1.6.1/parsnip/man/mlp.Rd | 16 parsnip-1.6.1/parsnip/man/multi_predict.Rd | 8 parsnip-1.6.1/parsnip/man/multinom_reg.Rd | 6 parsnip-1.6.1/parsnip/man/naive_Bayes.Rd | 6 parsnip-1.6.1/parsnip/man/nearest_neighbor.Rd | 6 parsnip-1.6.1/parsnip/man/null_model.Rd | 77 parsnip-1.6.1/parsnip/man/nullmodel.Rd | 59 parsnip-1.6.1/parsnip/man/ordinal_reg.Rd | 15 parsnip-1.6.1/parsnip/man/other_predict.Rd | 8 parsnip-1.6.1/parsnip/man/parsnip-package.Rd | 1 parsnip-1.6.1/parsnip/man/parsnip_update.Rd | 236 ++ parsnip-1.6.1/parsnip/man/pls.Rd | 6 parsnip-1.6.1/parsnip/man/poisson_reg.Rd | 6 parsnip-1.6.1/parsnip/man/predict.model_fit.Rd | 15 parsnip-1.6.1/parsnip/man/proportional_hazards.Rd | 6 parsnip-1.6.1/parsnip/man/rand_forest.Rd | 6 parsnip-1.6.1/parsnip/man/reexports.Rd | 8 parsnip-1.6.1/parsnip/man/rmd/C5_rules_C5.0.md | 2 parsnip-1.6.1/parsnip/man/rmd/auto_ml_h2o.Rmd | 5 parsnip-1.6.1/parsnip/man/rmd/auto_ml_h2o.md | 6 parsnip-1.6.1/parsnip/man/rmd/bag_mars_earth.Rmd | 7 parsnip-1.6.1/parsnip/man/rmd/bag_mars_earth.md | 9 parsnip-1.6.1/parsnip/man/rmd/bag_mlp_nnet.md | 2 parsnip-1.6.1/parsnip/man/rmd/bag_tree_C5.0.Rmd | 3 parsnip-1.6.1/parsnip/man/rmd/bag_tree_C5.0.md | 12 parsnip-1.6.1/parsnip/man/rmd/bag_tree_rpart.Rmd | 10 parsnip-1.6.1/parsnip/man/rmd/bag_tree_rpart.md | 21 parsnip-1.6.1/parsnip/man/rmd/bart_dbarts.md | 2 parsnip-1.6.1/parsnip/man/rmd/boost_tree_C5.0.md | 2 parsnip-1.6.1/parsnip/man/rmd/boost_tree_catboost.Rmd | 4 parsnip-1.6.1/parsnip/man/rmd/boost_tree_catboost.md | 32 parsnip-1.6.1/parsnip/man/rmd/boost_tree_h2o.Rmd | 4 parsnip-1.6.1/parsnip/man/rmd/boost_tree_h2o.md | 6 parsnip-1.6.1/parsnip/man/rmd/boost_tree_lightgbm.Rmd | 6 parsnip-1.6.1/parsnip/man/rmd/boost_tree_lightgbm.md | 8 parsnip-1.6.1/parsnip/man/rmd/boost_tree_mboost.Rmd | 23 parsnip-1.6.1/parsnip/man/rmd/boost_tree_mboost.md | 11 parsnip-1.6.1/parsnip/man/rmd/boost_tree_spark.md | 2 parsnip-1.6.1/parsnip/man/rmd/boost_tree_xgboost.Rmd | 6 parsnip-1.6.1/parsnip/man/rmd/boost_tree_xgboost.md | 8 parsnip-1.6.1/parsnip/man/rmd/cubist_rules_Cubist.md | 2 parsnip-1.6.1/parsnip/man/rmd/decision_tree_C5.0.md | 2 parsnip-1.6.1/parsnip/man/rmd/decision_tree_partykit.md | 18 parsnip-1.6.1/parsnip/man/rmd/decision_tree_rpart.md | 2 parsnip-1.6.1/parsnip/man/rmd/decision_tree_rpartScore.Rmd | 2 parsnip-1.6.1/parsnip/man/rmd/decision_tree_rpartScore.md | 4 parsnip-1.6.1/parsnip/man/rmd/decision_tree_spark.md | 2 parsnip-1.6.1/parsnip/man/rmd/discrim_flexible_earth.md | 2 parsnip-1.6.1/parsnip/man/rmd/discrim_linear_mda.md | 2 parsnip-1.6.1/parsnip/man/rmd/gen_additive_mod_mgcv.md | 22 parsnip-1.6.1/parsnip/man/rmd/gen_additive_mod_vgam.Rmd | 6 parsnip-1.6.1/parsnip/man/rmd/gen_additive_mod_vgam.md | 8 parsnip-1.6.1/parsnip/man/rmd/linear_reg_gee.Rmd | 3 parsnip-1.6.1/parsnip/man/rmd/linear_reg_gee.md | 3 parsnip-1.6.1/parsnip/man/rmd/linear_reg_glm.md | 2 parsnip-1.6.1/parsnip/man/rmd/linear_reg_glmer.Rmd | 3 parsnip-1.6.1/parsnip/man/rmd/linear_reg_glmer.md | 5 parsnip-1.6.1/parsnip/man/rmd/linear_reg_glmnet.md | 2 parsnip-1.6.1/parsnip/man/rmd/linear_reg_gls.Rmd | 3 parsnip-1.6.1/parsnip/man/rmd/linear_reg_gls.md | 2 parsnip-1.6.1/parsnip/man/rmd/linear_reg_h2o.Rmd | 4 parsnip-1.6.1/parsnip/man/rmd/linear_reg_h2o.md | 6 parsnip-1.6.1/parsnip/man/rmd/linear_reg_keras.md | 2 parsnip-1.6.1/parsnip/man/rmd/linear_reg_lm.md | 2 parsnip-1.6.1/parsnip/man/rmd/linear_reg_lme.Rmd | 3 parsnip-1.6.1/parsnip/man/rmd/linear_reg_lme.md | 3 parsnip-1.6.1/parsnip/man/rmd/linear_reg_lmer.Rmd | 3 parsnip-1.6.1/parsnip/man/rmd/linear_reg_lmer.md | 5 parsnip-1.6.1/parsnip/man/rmd/linear_reg_quantreg.md | 2 parsnip-1.6.1/parsnip/man/rmd/linear_reg_spark.md | 2 parsnip-1.6.1/parsnip/man/rmd/linear_reg_stan.md | 2 parsnip-1.6.1/parsnip/man/rmd/linear_reg_stan_glmer.Rmd | 3 parsnip-1.6.1/parsnip/man/rmd/linear_reg_stan_glmer.md | 5 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_gee.Rmd | 4 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_gee.md | 4 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_glm.md | 2 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_glmer.Rmd | 3 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_glmer.md | 5 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_glmnet.md | 2 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_h2o.Rmd | 10 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_h2o.md | 12 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_keras.md | 2 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_spark.md | 2 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_stan.md | 2 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_stan_glmer.Rmd | 3 parsnip-1.6.1/parsnip/man/rmd/logistic_reg_stan_glmer.md | 5 parsnip-1.6.1/parsnip/man/rmd/mars_earth.Rmd | 2 parsnip-1.6.1/parsnip/man/rmd/mars_earth.md | 4 parsnip-1.6.1/parsnip/man/rmd/mlp_h2o.Rmd | 4 parsnip-1.6.1/parsnip/man/rmd/mlp_h2o.md | 6 parsnip-1.6.1/parsnip/man/rmd/mlp_nnet.md | 2 parsnip-1.6.1/parsnip/man/rmd/mlp_qrnn.Rmd | 17 parsnip-1.6.1/parsnip/man/rmd/mlp_qrnn.md | 15 parsnip-1.6.1/parsnip/man/rmd/multinom_reg_glmnet.md | 2 parsnip-1.6.1/parsnip/man/rmd/multinom_reg_h2o.Rmd | 4 parsnip-1.6.1/parsnip/man/rmd/multinom_reg_h2o.md | 6 parsnip-1.6.1/parsnip/man/rmd/multinom_reg_keras.md | 2 parsnip-1.6.1/parsnip/man/rmd/multinom_reg_spark.md | 2 parsnip-1.6.1/parsnip/man/rmd/naive_Bayes_h2o.Rmd | 4 parsnip-1.6.1/parsnip/man/rmd/naive_Bayes_h2o.md | 6 parsnip-1.6.1/parsnip/man/rmd/null-model.Rmd | 11 parsnip-1.6.1/parsnip/man/rmd/null-model.md | 65 parsnip-1.6.1/parsnip/man/rmd/ordinal_reg_ordinalNet.Rmd | 2 parsnip-1.6.1/parsnip/man/rmd/ordinal_reg_ordinalNet.md | 4 parsnip-1.6.1/parsnip/man/rmd/ordinal_reg_polr.Rmd | 9 parsnip-1.6.1/parsnip/man/rmd/ordinal_reg_polr.md | 17 parsnip-1.6.1/parsnip/man/rmd/ordinal_reg_vglm.Rmd | 2 parsnip-1.6.1/parsnip/man/rmd/ordinal_reg_vglm.md | 2 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_gee.Rmd | 3 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_gee.md | 3 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_glm.md | 4 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_glmer.Rmd | 2 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_glmer.md | 4 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_glmnet.md | 2 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_h2o.Rmd | 2 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_h2o.md | 4 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_hurdle.Rmd | 6 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_hurdle.md | 6 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_stan.md | 2 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_stan_glmer.Rmd | 2 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_stan_glmer.md | 4 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_zeroinfl.Rmd | 6 parsnip-1.6.1/parsnip/man/rmd/poisson_reg_zeroinfl.md | 6 parsnip-1.6.1/parsnip/man/rmd/proportional_hazards_glmnet.md | 2 parsnip-1.6.1/parsnip/man/rmd/proportional_hazards_survival.Rmd | 1 parsnip-1.6.1/parsnip/man/rmd/proportional_hazards_survival.md | 3 parsnip-1.6.1/parsnip/man/rmd/rand_forest_aorsf.md | 22 parsnip-1.6.1/parsnip/man/rmd/rand_forest_grf.Rmd | 10 parsnip-1.6.1/parsnip/man/rmd/rand_forest_grf.md | 22 parsnip-1.6.1/parsnip/man/rmd/rand_forest_h2o.Rmd | 4 parsnip-1.6.1/parsnip/man/rmd/rand_forest_h2o.md | 6 parsnip-1.6.1/parsnip/man/rmd/rand_forest_ordinalForest.Rmd | 11 parsnip-1.6.1/parsnip/man/rmd/rand_forest_ordinalForest.md | 21 parsnip-1.6.1/parsnip/man/rmd/rand_forest_partykit.md | 18 parsnip-1.6.1/parsnip/man/rmd/rand_forest_randomForest.md | 2 parsnip-1.6.1/parsnip/man/rmd/rand_forest_randomForestSRC.Rmd |only parsnip-1.6.1/parsnip/man/rmd/rand_forest_randomForestSRC.md |only parsnip-1.6.1/parsnip/man/rmd/rand_forest_ranger.Rmd | 23 parsnip-1.6.1/parsnip/man/rmd/rand_forest_ranger.md | 67 parsnip-1.6.1/parsnip/man/rmd/rand_forest_spark.md | 2 parsnip-1.6.1/parsnip/man/rmd/rule_fit_h2o.Rmd | 4 parsnip-1.6.1/parsnip/man/rmd/rule_fit_h2o.md | 6 parsnip-1.6.1/parsnip/man/rmd/rule_fit_xrf.md | 12 parsnip-1.6.1/parsnip/man/rmd/survival_reg_flexsurv.md | 2 parsnip-1.6.1/parsnip/man/rmd/survival_reg_flexsurvspline.md | 2 parsnip-1.6.1/parsnip/man/rmd/survival_reg_survival.Rmd | 1 parsnip-1.6.1/parsnip/man/rmd/survival_reg_survival.md | 3 parsnip-1.6.1/parsnip/man/rmd/svm_linear_LiblineaR.md | 4 parsnip-1.6.1/parsnip/man/rmd/svm_rbf_kernlab.Rmd | 2 parsnip-1.6.1/parsnip/man/rmd/svm_rbf_kernlab.md | 23 parsnip-1.6.1/parsnip/man/rmd/tabular_auto_int_brulee.Rmd |only parsnip-1.6.1/parsnip/man/rmd/tabular_auto_int_brulee.md |only parsnip-1.6.1/parsnip/man/rmd/tabular_chronos_brulee.Rmd |only parsnip-1.6.1/parsnip/man/rmd/tabular_chronos_brulee.md |only parsnip-1.6.1/parsnip/man/rmd/tabular_icl_brulee.Rmd |only parsnip-1.6.1/parsnip/man/rmd/tabular_icl_brulee.md |only parsnip-1.6.1/parsnip/man/rmd/tabular_pfn_tabpfn.Rmd |only parsnip-1.6.1/parsnip/man/rmd/tabular_pfn_tabpfn.md |only parsnip-1.6.1/parsnip/man/rmd/tabular_resnet_brulee.Rmd |only parsnip-1.6.1/parsnip/man/rmd/tabular_resnet_brulee.md |only parsnip-1.6.1/parsnip/man/rmd/tabular_rln_brulee.Rmd |only parsnip-1.6.1/parsnip/man/rmd/tabular_rln_brulee.md |only parsnip-1.6.1/parsnip/man/rmd/tabular_saint_brulee.Rmd |only parsnip-1.6.1/parsnip/man/rmd/tabular_saint_brulee.md |only parsnip-1.6.1/parsnip/man/rmd/template-uses-case-weights.Rmd | 2 parsnip-1.6.1/parsnip/man/rmd/template-uses-case-weights.md | 2 parsnip-1.6.1/parsnip/man/rule_fit.Rd | 6 parsnip-1.6.1/parsnip/man/set_new_model.Rd | 9 parsnip-1.6.1/parsnip/man/surv_reg.Rd | 2 parsnip-1.6.1/parsnip/man/survival_reg.Rd | 6 parsnip-1.6.1/parsnip/man/svm_linear.Rd | 6 parsnip-1.6.1/parsnip/man/svm_poly.Rd | 6 parsnip-1.6.1/parsnip/man/svm_rbf.Rd | 6 parsnip-1.6.1/parsnip/man/tabular_auto_int.Rd |only parsnip-1.6.1/parsnip/man/tabular_chronos.Rd |only parsnip-1.6.1/parsnip/man/tabular_icl.Rd |only parsnip-1.6.1/parsnip/man/tabular_pfn.Rd |only parsnip-1.6.1/parsnip/man/tabular_resnet.Rd |only parsnip-1.6.1/parsnip/man/tabular_rln.Rd |only parsnip-1.6.1/parsnip/man/tabular_saint.Rd |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/bart.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/boost_tree_C5.0.md | 8 parsnip-1.6.1/parsnip/tests/testthat/_snaps/boost_tree_xgboost.md | 58 parsnip-1.6.1/parsnip/tests/testthat/_snaps/fit_interfaces.md | 60 parsnip-1.6.1/parsnip/tests/testthat/_snaps/glm_grouped.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/linear_reg.md | 14 parsnip-1.6.1/parsnip/tests/testthat/_snaps/logistic_reg.md | 12 parsnip-1.6.1/parsnip/tests/testthat/_snaps/misc.md | 26 parsnip-1.6.1/parsnip/tests/testthat/_snaps/mlp-tunable.md | 15 parsnip-1.6.1/parsnip/tests/testthat/_snaps/mlp.md | 10 parsnip-1.6.1/parsnip/tests/testthat/_snaps/mlp_keras3.md | 8 parsnip-1.6.1/parsnip/tests/testthat/_snaps/model_basics.md | 10 parsnip-1.6.1/parsnip/tests/testthat/_snaps/nearest_neighbor_kknn.md | 8 parsnip-1.6.1/parsnip/tests/testthat/_snaps/nullmodel.md | 11 parsnip-1.6.1/parsnip/tests/testthat/_snaps/ordinal_reg.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/predict_formats.md | 6 parsnip-1.6.1/parsnip/tests/testthat/_snaps/predict_raw.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/rand_forest_ranger.md | 2 parsnip-1.6.1/parsnip/tests/testthat/_snaps/registration.md | 4 parsnip-1.6.1/parsnip/tests/testthat/_snaps/sparsevctrs.md | 8 parsnip-1.6.1/parsnip/tests/testthat/_snaps/survival-censoring-weights.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/svm_linear.md | 35 parsnip-1.6.1/parsnip/tests/testthat/_snaps/tabular_auto_int.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/tabular_chronos.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/tabular_icl.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/tabular_pfn.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/tabular_resnet.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/tabular_rln.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/tabular_saint.md |only parsnip-1.6.1/parsnip/tests/testthat/_snaps/translate.md | 111 - parsnip-1.6.1/parsnip/tests/testthat/helper-extract_parameter_set.R | 6 parsnip-1.6.1/parsnip/tests/testthat/helper-ordinal-reg.R |only parsnip-1.6.1/parsnip/tests/testthat/test-adds.R | 4 parsnip-1.6.1/parsnip/tests/testthat/test-bart.R | 145 + parsnip-1.6.1/parsnip/tests/testthat/test-boost_tree_C5.0.R | 1 parsnip-1.6.1/parsnip/tests/testthat/test-boost_tree_xgboost.R | 107 + parsnip-1.6.1/parsnip/tests/testthat/test-convert_data.R | 10 parsnip-1.6.1/parsnip/tests/testthat/test-engine-docs.R |only parsnip-1.6.1/parsnip/tests/testthat/test-extract.R | 4 parsnip-1.6.1/parsnip/tests/testthat/test-failed_models.R | 12 parsnip-1.6.1/parsnip/tests/testthat/test-fit_interfaces.R | 86 - parsnip-1.6.1/parsnip/tests/testthat/test-gen_additive_model.R | 4 parsnip-1.6.1/parsnip/tests/testthat/test-glm_grouped.R | 14 parsnip-1.6.1/parsnip/tests/testthat/test-glmnet-engines.R |only parsnip-1.6.1/parsnip/tests/testthat/test-linear_reg.R | 2 parsnip-1.6.1/parsnip/tests/testthat/test-linear_reg_quantreg.R | 8 parsnip-1.6.1/parsnip/tests/testthat/test-mars.R | 72 parsnip-1.6.1/parsnip/tests/testthat/test-misc.R | 27 parsnip-1.6.1/parsnip/tests/testthat/test-mlp-tunable.R | 10 parsnip-1.6.1/parsnip/tests/testthat/test-mlp.R | 14 parsnip-1.6.1/parsnip/tests/testthat/test-mlp_keras.R | 24 parsnip-1.6.1/parsnip/tests/testthat/test-mlp_keras3.R | 24 parsnip-1.6.1/parsnip/tests/testthat/test-mlp_nnet.R | 18 parsnip-1.6.1/parsnip/tests/testthat/test-model_basics.R | 1 parsnip-1.6.1/parsnip/tests/testthat/test-nearest_neighbor_kknn.R | 11 parsnip-1.6.1/parsnip/tests/testthat/test-nullmodel.R | 71 parsnip-1.6.1/parsnip/tests/testthat/test-ordinal_reg.R | 47 parsnip-1.6.1/parsnip/tests/testthat/test-partykit.R | 2 parsnip-1.6.1/parsnip/tests/testthat/test-predict_formats.R | 26 parsnip-1.6.1/parsnip/tests/testthat/test-predict_raw.R |only parsnip-1.6.1/parsnip/tests/testthat/test-rand_forest_ranger.R | 50 parsnip-1.6.1/parsnip/tests/testthat/test-registration.R | 42 parsnip-1.6.1/parsnip/tests/testthat/test-sparsevctrs.R | 56 parsnip-1.6.1/parsnip/tests/testthat/test-standalone-survival.R | 9 parsnip-1.6.1/parsnip/tests/testthat/test-survival-censoring-weights.R | 80 parsnip-1.6.1/parsnip/tests/testthat/test-svm_linear.R | 84 - parsnip-1.6.1/parsnip/tests/testthat/test-svm_rbf.R | 2 parsnip-1.6.1/parsnip/tests/testthat/test-tabular_auto_int.R |only parsnip-1.6.1/parsnip/tests/testthat/test-tabular_chronos.R |only parsnip-1.6.1/parsnip/tests/testthat/test-tabular_icl.R |only parsnip-1.6.1/parsnip/tests/testthat/test-tabular_pfn.R |only parsnip-1.6.1/parsnip/tests/testthat/test-tabular_resnet.R |only parsnip-1.6.1/parsnip/tests/testthat/test-tabular_rln.R |only parsnip-1.6.1/parsnip/tests/testthat/test-tabular_saint.R |only parsnip-1.6.1/parsnip/tests/testthat/test-translate.R | 35 parsnip-1.6.1/parsnip/tests/testthat/test-varying.R | 20 439 files changed, 4358 insertions(+), 2133 deletions(-)
Title: Functions to Help in your Coding Etiquette
Description: Adds some functions to help in your coding etiquette.
'tinycodet' primarily focuses on 4 aspects.
1) Safer decimal (in)equality testing,
standard-evaluated alternatives to with() and aes(),
and other functions for safer coding.
2) A new package import system,
that attempts to combine the benefits of using a package without attaching it,
with the benefits of attaching a package.
3) Extending the string manipulation capabilities of the 'stringi' R package.
4) Reducing repetitive code.
Besides linking to 'Rcpp', 'tinycodet' has only one other dependency, namely 'stringi'.
Author: Tony Wilkes [aut, cre, cph]
Maintainer: Tony Wilkes <tonywilkes.nl@gmail.com>
Diff between tinycodet versions 0.7.1 dated 2026-08-21 and 0.8.0 dated 2026-09-27
tinycodet-0.7.1/tinycodet/R/aaa5_tinycodet_misc.R |only tinycodet-0.7.1/tinycodet/R/import_inops.R |only tinycodet-0.7.1/tinycodet/R/import_inops.control.R |only tinycodet-0.7.1/tinycodet/R/import_inops_expose.R |only tinycodet-0.7.1/tinycodet/R/import_inops_unexpose.R |only tinycodet-0.7.1/tinycodet/R/import_misc.R |only tinycodet-0.7.1/tinycodet/R/internal_typecasting.R |only tinycodet-0.7.1/tinycodet/R/pversion.R |only tinycodet-0.7.1/tinycodet/R/report_inops.R |only tinycodet-0.7.1/tinycodet/R/source_selection.R |only tinycodet-0.7.1/tinycodet/inst/examples/atomic_typecast.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/import/test-import_LL.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/import/test-import_inops-expose-alias.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/import/test-import_inops-expose-pkg.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/import/test-import_inops-unexpose-alias.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/import/test-import_inops-unexpose-pkg.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/import/test-import_inops.control.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/import/test-import_int.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/import/test-import_lock.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/import/test-internal.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/import/test-pversion.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/import/test-x.import.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/Rd |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/features |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/hsearch |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/links |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/nsInfo |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/package |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/Rd |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/features |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/hsearch |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/links |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/nsInfo |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/package |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/Rd |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/features |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/hsearch |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/links |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/nsInfo |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/package |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/test-aaa2-pversion.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/test-import_inops-expose-alias-special.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/test-import_inops-expose-pkg-special.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/test-import_inops-unexpose-alias-special.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/test-import_inops-unexpose-pkg-special.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/special/test-import_int-special.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/test-report_inops.R |only tinycodet-0.7.1/tinycodet/inst/tinytest/test-source_selection.R |only tinycodet-0.7.1/tinycodet/man/aaa5_tinycodet_misc.Rd |only tinycodet-0.7.1/tinycodet/man/import_inops.Rd |only tinycodet-0.7.1/tinycodet/man/import_inops.control.Rd |only tinycodet-0.7.1/tinycodet/man/import_misc.Rd |only tinycodet-0.7.1/tinycodet/man/pversion.Rd |only tinycodet-0.7.1/tinycodet/man/report_inops.Rd |only tinycodet-0.7.1/tinycodet/man/source_selection.Rd |only tinycodet-0.8.0/tinycodet/DESCRIPTION | 10 tinycodet-0.8.0/tinycodet/MD5 | 368 ++++---- tinycodet-0.8.0/tinycodet/NAMESPACE | 20 tinycodet-0.8.0/tinycodet/NEWS.md | 38 tinycodet-0.8.0/tinycodet/R/RcppExports.R | 14 tinycodet-0.8.0/tinycodet/R/aaa0_tinycodet_help.R | 6 tinycodet-0.8.0/tinycodet/R/aaa2_tinycodet_import.R | 95 +- tinycodet-0.8.0/tinycodet/R/import_as.R | 423 +++------- tinycodet-0.8.0/tinycodet/R/import_data.R | 15 tinycodet-0.8.0/tinycodet/R/import_diagnose.R |only tinycodet-0.8.0/tinycodet/R/import_env.R |only tinycodet-0.8.0/tinycodet/R/import_from.R |only tinycodet-0.8.0/tinycodet/R/import_helper.R | 134 --- tinycodet-0.8.0/tinycodet/R/import_legacy.R |only tinycodet-0.8.0/tinycodet/R/import_ls.R |only tinycodet-0.8.0/tinycodet/R/internal_check.R |only tinycodet-0.8.0/tinycodet/R/internal_functions.R | 401 +-------- tinycodet-0.8.0/tinycodet/R/internal_import.R |only tinycodet-0.8.0/tinycodet/R/internal_lists.R |only tinycodet-0.8.0/tinycodet/R/meta_functions.R | 100 ++ tinycodet-0.8.0/tinycodet/R/pkgs.R | 122 +- tinycodet-0.8.0/tinycodet/R/searchenv.R |only tinycodet-0.8.0/tinycodet/R/str_search.R | 62 - tinycodet-0.8.0/tinycodet/R/strcut.R | 2 tinycodet-0.8.0/tinycodet/R/strfind_rp.R |only tinycodet-0.8.0/tinycodet/R/tinyimport_alias.R |only tinycodet-0.8.0/tinycodet/R/zzz.R | 13 tinycodet-0.8.0/tinycodet/inst/examples/import.R |only tinycodet-0.8.0/tinycodet/inst/examples/import_ls.R |only tinycodet-0.8.0/tinycodet/inst/examples/searchenv.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-help.import.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-import_args.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-import_as.R | 87 -- tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-import_diagnose.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-import_from.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-import_general.R | 207 +--- tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-import_internal.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-import_legacy.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-import_ls.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-pkgs.R | 30 tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-searchenv.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/import/test-tinyimport_alias.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/DESCRIPTION | 8 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/NAMESPACE | 9 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/Poof/Rd.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/Poof/features.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/Poof/hsearch.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/Poof/links.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/Poof/nsInfo.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/Poof/package.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/R/tinycodetfakepkg1 | 54 - tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/R/tinycodetfakepkg1.rdb |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/R/tinycodetfakepkg1.rdx |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/help/AnIndex | 9 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/help/aliases.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/help/paths.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/help/tinycodetfakepkg1.rdb |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/help/tinycodetfakepkg1.rdx |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/html/00Index.html | 34 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/html/R.css | 272 +++--- tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/DESCRIPTION | 8 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/INDEX | 3 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/NAMESPACE | 9 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/Poof/Rd.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/Poof/features.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/Poof/hsearch.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/Poof/links.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/Poof/nsInfo.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/Poof/package.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/R/tinycodetfakepkg2 | 78 - tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/R/tinycodetfakepkg2.rdb |only tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/R/tinycodetfakepkg2.rdx |only tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/help/AnIndex | 9 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/help/aliases.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/help/paths.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/help/tinycodetfakepkg2.rdb |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/help/tinycodetfakepkg2.rdx |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/html/00Index.html | 48 - tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/html/R.css | 272 +++--- tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/DESCRIPTION | 8 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/NAMESPACE | 17 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/Poof/Rd.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/Poof/features.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/Poof/hsearch.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/Poof/links.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/Poof/nsInfo.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/Poof/package.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/R/tinycodetfakepkg3 | 54 - tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/R/tinycodetfakepkg3.rdb |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/R/tinycodetfakepkg3.rdx |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/help/AnIndex | 13 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/help/aliases.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/help/paths.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/help/tinycodetfakepkg3.rdb |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/help/tinycodetfakepkg3.rdx |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/html/00Index.html | 34 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/html/R.css | 272 +++--- tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/DESCRIPTION | 8 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/NAMESPACE | 17 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/Rd.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/features.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/hsearch.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/links.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/nsInfo.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/Poof/package.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/R/tinycodetfakepkg3 | 54 - tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/R/tinycodetfakepkg3.rdb |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/R/tinycodetfakepkg3.rdx |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/help/AnIndex | 13 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/help/aliases.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/help/paths.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/help/tinycodetfakepkg3.rdb |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/help/tinycodetfakepkg3.rdx |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/html/00Index.html | 34 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/html/R.css | 272 +++--- tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/DESCRIPTION | 8 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/NAMESPACE | 9 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/Rd.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/features.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/hsearch.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/links.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/nsInfo.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/Poof/package.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/R/tinycodetfakepkg1 | 54 - tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/R/tinycodetfakepkg1.rdb |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/R/tinycodetfakepkg1.rdx |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/help/AnIndex | 9 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/help/aliases.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/help/paths.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/help/tinycodetfakepkg1.rdb |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/help/tinycodetfakepkg1.rdx |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/html/00Index.html | 34 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/html/R.css | 272 +++--- tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/DESCRIPTION | 8 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/INDEX | 3 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/NAMESPACE | 9 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/Rd.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/features.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/hsearch.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/links.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/nsInfo.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/Poof/package.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/R/tinycodetfakepkg2 | 78 - tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/R/tinycodetfakepkg2.rdb |only tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/R/tinycodetfakepkg2.rdx |only tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/help/AnIndex | 9 tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/help/aliases.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/help/paths.rds |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/help/tinycodetfakepkg2.rdb |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/help/tinycodetfakepkg2.rdx |binary tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/html/00Index.html | 48 - tinycodet-0.8.0/tinycodet/inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/html/R.css | 272 +++--- tinycodet-0.8.0/tinycodet/inst/tinytest/special/test-aaa2-import_diagnose.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/special/test-import_as-special.R | 261 +----- tinycodet-0.8.0/tinycodet/inst/tinytest/special/test-import_from-special.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/special/test-import_general-special.R | 148 --- tinycodet-0.8.0/tinycodet/inst/tinytest/special/test-import_ls-special.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/special/test-import_nolib-special.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/special/test-pkgs-special.R | 38 tinycodet-0.8.0/tinycodet/inst/tinytest/special/test-tinyimport_alias-special.R |only tinycodet-0.8.0/tinycodet/inst/tinytest/strings/test-str_subset_ops.R | 2 tinycodet-0.8.0/tinycodet/man/aaa0_tinycodet_help.Rd | 4 tinycodet-0.8.0/tinycodet/man/aaa2_tinycodet_import.Rd | 92 +- tinycodet-0.8.0/tinycodet/man/import_as.Rd | 157 +-- tinycodet-0.8.0/tinycodet/man/import_data.Rd | 5 tinycodet-0.8.0/tinycodet/man/import_diagnose.Rd |only tinycodet-0.8.0/tinycodet/man/import_env.Rd |only tinycodet-0.8.0/tinycodet/man/import_from.Rd |only tinycodet-0.8.0/tinycodet/man/import_helper.Rd | 91 -- tinycodet-0.8.0/tinycodet/man/import_legacy.Rd |only tinycodet-0.8.0/tinycodet/man/import_ls.Rd |only tinycodet-0.8.0/tinycodet/man/pkgs.Rd | 51 - tinycodet-0.8.0/tinycodet/man/searchenv.Rd |only tinycodet-0.8.0/tinycodet/man/str_search.Rd | 2 tinycodet-0.8.0/tinycodet/man/tinyimport_alias.Rd |only tinycodet-0.8.0/tinycodet/src/RcppExports.cpp | 26 tinycodet-0.8.0/tinycodet/src/rcpp_import.cpp | 43 - 232 files changed, 2333 insertions(+), 3156 deletions(-)
Title: Latent True-Score and Target-Population Anchored Geometric SMD
Description: Implements the latent true-score and target-population
anchored geometric standardized mean difference (LTG-SMD) framework
for two-group effect-size analysis. Provides plug-in estimation,
analytic delta-method confidence intervals using a sample
fourth-moment plug-in, bias-corrected and bias-corrected-accelerated
nonparametric bootstrap confidence intervals with study x group
stratification, denominator-sensitivity profiles, and multi-site
meta-analytic wrappers. Includes denominator-diagnostic reporting,
a pluggable reliability estimator interface, and an explicit
interface for specifying the target reference distribution.
Companion software to Nakamura (2026) "The Denominator Chooses the
Estimand: A Target-Population True-Score Framework for Standardized
Mean Differences" <doi:10.1037/met0000875>.
Author: Daiki Nakamura [aut, cre]
Maintainer: Daiki Nakamura <nakamura@miyazaki-u.ac.jp>
Diff between ltgsmd versions 0.2.2 dated 2026-09-02 and 0.2.3 dated 2026-09-27
DESCRIPTION | 13 +-- MD5 | 37 ++++----- NEWS.md | 27 ++++++ R/compute_ltg_smd.R | 17 ++-- R/denominator_sensitivity.R | 11 +- R/helpers.R | 6 - R/ltg_smd_ci.R | 2 R/ltgsmd-package.R | 14 ++- R/multisite_ltg_smd.R | 3 README.md | 18 ++-- inst/CITATION |only inst/doc/getting-started.R | 166 ++++++++++++++++++++--------------------- inst/doc/getting-started.Rmd | 30 +++---- inst/doc/getting-started.html | 54 +++++++------ man/compute_ltg_smd.Rd | 11 +- man/denominator_sensitivity.Rd | 9 +- man/ltg_smd_ci.Rd | 2 man/ltgsmd-package.Rd | 14 ++- man/multisite_ltg_smd.Rd | 3 vignettes/getting-started.Rmd | 30 +++---- 20 files changed, 259 insertions(+), 208 deletions(-)
Title: Shape Foundry & Geom for 'ggplot2'
Description: A 'ggplot2' extension that supports arbitrary
hand-crafted colourable & fillable shapes. New shapes may be feature
requested via a Github issue.
Author: Carl Goodwin [aut, cre, cph]
Maintainer: Carl Goodwin <carl.goodwin@quantumjitter.com>
Diff between ggfoundry versions 0.3.1 dated 2024-07-06 and 0.4.0 dated 2026-09-27
DESCRIPTION | 14 - MD5 | 52 ++++-- NAMESPACE | 14 + NEWS.md | 23 ++ R/geom_casting.R | 156 +++++++++++++----- R/ggfoundry-package.R | 2 R/utils.R | 107 ++++++++++++ README.md | 49 ++++- build/vignette.rds |binary inst/doc/ggfoundry.R | 68 +++++++- inst/doc/ggfoundry.Rmd | 86 +++++++++- inst/doc/ggfoundry.html | 133 +++++++++++++-- inst/extdata/container-bowl0_col-cairo.svg |only inst/extdata/container-bowl0_fill-cairo.svg |only inst/extdata/container-bowl1_col-cairo.svg |only inst/extdata/container-bowl1_fill-cairo.svg |only inst/extdata/container-bowl2_col-cairo.svg |only inst/extdata/container-bowl2_fill-cairo.svg |only inst/extdata/container-cup_col-cairo.svg |only inst/extdata/container-cup_fill-cairo.svg |only inst/extdata/container-mug_col-cairo.svg |only inst/extdata/container-mug_fill-cairo.svg |only inst/extdata/container-takeaway_col-cairo.svg |only inst/extdata/container-takeaway_fill-cairo.svg |only inst/extdata/food-coffeebean_col-cairo.svg |only inst/extdata/food-coffeebean_fill-cairo.svg |only inst/extdata/food-jackolantern_col-cairo.svg |only inst/extdata/food-jackolantern_fill-cairo.svg |only inst/extdata/food-pumpkin_col-cairo.svg |only inst/extdata/food-pumpkin_fill-cairo.svg |only man/figures/README-example-1.png |binary man/geom_casting.Rd | 144 ++++++----------- man/ggfoundry-package.Rd | 5 tests/testthat/_snaps/geom_casting.md | 171 +++++++++++--------- tests/testthat/test-geom_casting.R | 210 ++++++++++++++++++++++++- vignettes/ggfoundry.Rmd | 86 +++++++++- 36 files changed, 1030 insertions(+), 290 deletions(-)
Title: Post-Linkage Data Analysis Based on Mixture Modelling
Description: Perform inference in the secondary analysis setting with linked data potentially containing mismatch errors. Only the linked data file may be accessible and information about the record linkage process may be limited or unavailable. Implements the 'General Framework for Regression with Mismatched Data' developed by Slawski et al. (2025) <doi:10.1093/jrsssa/qnae083>. The framework uses a mixture model for pairs of linked records whose two components reflect distributions conditional on match status, i.e., correct match or mismatch. Inference is based on composite likelihood and the Expectation-Maximization (EM) algorithm. The package currently supports Cox Proportional Hazards Regression (right-censored data only) and Generalized Linear Regression Models (Gaussian, Gamma, Poisson, and Logistic (binary models only)). Information about the underlying record linkage process can be incorporated into the method if available (e.g., assumed overall mismatch rate, safe matches, predictors [...truncated...]
Author: Priyanjali Bukke [aut, cre],
Zhenbang Wang [aut],
Martin Slawski [aut] ,
Brady T. West [aut],
Emanuel Ben-David [aut],
Guoqing Diao [aut]
Maintainer: Priyanjali Bukke <postlink.group@gmail.com>
Diff between pldamixture versions 0.1.1 dated 2024-06-07 and 0.1.2 dated 2026-09-27
DESCRIPTION | 20 ++++---- MD5 | 28 ++++++------ NEWS.md |only R/fit_mixture.R | 21 ++++----- R/fit_mixture_cox.R | 29 ++++++------ R/fit_mixture_gaussian.R | 104 +++++++++++++++++++++++---------------------- R/fit_mixture_glm.R | 83 ++++++++++++++++++----------------- R/pldamixture-package.R | 19 +++----- R/predict.fitmixture.R | 75 ++++++++++++-------------------- R/summary.fitmixture.R | 19 +++----- README.md |only build/partial.rdb |binary man/fit_mixture.Rd | 13 +++-- man/pldamixture-package.Rd | 37 ++++++++++++---- man/predict.fitmixture.Rd | 24 +--------- man/summary.fitmixture.Rd | 2 16 files changed, 238 insertions(+), 236 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-17 1.1.1
2026-04-21 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-19 1.3.0
2025-08-28 1.2.0
2025-01-10 1.1.0
2024-07-07 1.0.1
2024-07-02 1.0.0
2024-03-05 0.3.0
2023-11-13 0.2.0
2023-06-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-01 1.0.2
2020-10-16 1.0.1
2020-04-15 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-30 3.1.0
2021-11-17 3.0.3
2021-02-11 2.3.6
2020-10-08 2.3.1
2019-11-12 2.3
2018-02-08 2.1
2017-09-06 1.16
2017-07-19 1.14.2
2017-07-10 1.14
2017-07-08 1.13
2016-08-30 1.5.5
2016-08-28 1.5.4
2016-05-14 1.4.0
2016-04-09 1.3.4
2016-02-29 1.2.8
2016-02-19 1.2.6
2015-11-10 1.2.1
2015-10-29 1.1.1
2015-06-13 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-09-10 1.9.9.1
2026-04-25 1.9.8.7
2026-03-13 1.9.8.3
2026-02-13 1.9.8.2
2026-02-12 1.9.7.1
2024-09-19 1.9.7
2024-02-02 1.9.5.1
2023-12-11 1.9.5
2023-01-20 1.9.3
2022-11-28 1.9.2
2022-06-03 1.8.9
2021-09-02 1.8.7
2020-10-14 1.8.6
2020-08-28 1.8.5
2020-08-12 1.8.2
2018-04-11 1.7.9
2016-04-05 1.7.7
2016-02-23 1.7.6
2015-08-14 1.7.1
2014-09-04 1.6.11
2013-12-06 1.6.8
2013-01-17 1.6.3
2013-01-15 1.6.1
2012-11-20 1.5.8
2012-09-28 1.5.6
2012-02-25 1.5.5
2011-12-13 1.5.2
2009-10-01 1.4.4
2009-04-28 1.4.3
2008-05-13 1.3.8
2007-06-14 1.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-28 1.0.1
2023-05-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-09-17 0.3.0
2026-06-29 0.2.0
2026-04-02 0.1.0
Title: NanoString Quality Control Dashboard
Description: NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
<doi:10.1038/nbt1385>). Each barcode is assigned a
messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
target can be counted. As a result each count of a specific barcode
represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString
quality Control dasHbOard) is able to analyse the exported NanoString
nCounter data and facilitates the user in performing a quality
control. 'NACHO' does this by visualising quality control metrics,
expression of control genes, principal components and sample specific
size factors in an interactive web application.
Author: Mickael Canouil [aut, cre] ,
Roderick Slieker [aut] ,
Gerard Bouland [aut]
Maintainer: Mickael Canouil <pro@mickael.canouil.dev>
Diff between NACHO versions 2.0.6 dated 2024-01-12 and 2.0.7 dated 2026-09-27
DESCRIPTION | 28 - MD5 | 131 +++-- NAMESPACE | 18 NEWS.md | 89 +++- R/GSE74821.R | 4 R/autoplot.R | 594 ++++++++++++++++----------- R/check_outliers.R | 47 -- R/deploy.R | 17 R/factor_calculation.R | 9 R/format_tag_content.R | 10 R/geometric_housekeeping.R | 13 R/geometric_probes.R | 2 R/load_rcc.R | 84 ++- R/norm_glm.R | 6 R/normalise.R | 64 +- R/normalise_counts.R | 8 R/print.R | 176 +++++--- R/qc_features.R | 15 R/qc_imaging.R | 2 R/qc_limit_detection.R | 8 R/qc_pca.R | 8 R/qc_positive_control.R | 6 R/qc_rcc.R | 52 +- R/read_rcc.R | 77 ++- R/read_tags.R | 4 R/render.R | 61 +- R/utils.R | 61 ++ R/visualise.R | 20 README.md | 29 - build/partial.rdb |binary build/vignette.rds |binary data/GSE74821.rda |binary inst/CITATION | 27 - inst/WORDLIST |only inst/app/app.R | 556 +++++++++++++++++-------- inst/app/utils.R | 204 +++++++-- inst/app/www/about-nacho.md | 6 inst/doc/NACHO-analysis.R | 65 +- inst/doc/NACHO-analysis.Rmd | 72 ++- inst/doc/NACHO-analysis.html | 413 ++++++++++++++++-- inst/doc/NACHO.R | 223 +++++----- inst/doc/NACHO.Rmd | 205 ++++++--- inst/doc/NACHO.html | 492 +++++++++++++++------- man/GSE74821.Rd | 5 man/NACHO-package.Rd | 1 man/autoplot.nacho.Rd | 6 man/deploy.Rd | 11 man/figures/app_screenshot.R | 44 +- man/load_rcc.Rd | 2 man/normalise.Rd | 8 man/print.nacho.Rd | 13 man/render.Rd | 8 man/visualise.Rd | 4 tests/testthat.R | 42 - tests/testthat/helper-fixtures.R |only tests/testthat/helper-values.R |only tests/testthat/test-app.R |only tests/testthat/test-autoplot.R | 98 +++- tests/testthat/test-check_outliers.R | 10 tests/testthat/test-geometric_housekeeping.R |only tests/testthat/test-load_rcc.R | 527 ++++++++++++++--------- tests/testthat/test-normalise.R | 58 ++ tests/testthat/test-print.R | 29 + tests/testthat/test-render.R | 54 ++ tests/testthat/test-utils.R |only tests/testthat/test-values.R |only tests/testthat/test-visualise.R | 110 +---- vignettes/NACHO-analysis.Rmd | 72 ++- vignettes/NACHO.Rmd | 205 ++++++--- vignettes/nacho.bib | 2 70 files changed, 3511 insertions(+), 1704 deletions(-)
Title: Reverse-Correlation Image-Classification Toolbox
Description: Generate stimuli and analyze data of reverse correlation image
classification experiments (psychophysical tasks aimed at visualizing
cognitive mental representations of faces). For the method see Dotsch and
Todorov (2012) <doi:10.1177/1948550611430272>; for a practical primer see
Brinkman, Todorov and Dotsch (2017) <doi:10.1080/10463283.2017.1381469>.
Author: Ron Dotsch [aut, cre]
Maintainer: Ron Dotsch <rdotsch@gmail.com>
Diff between rcicr versions 1.4.1 dated 2026-09-19 and 1.5.0 dated 2026-09-27
DESCRIPTION | 6 MD5 | 99 ++++----- NEWS.md | 38 +++ R/autoscale.R | 30 +- R/batchGenerateCI.R | 51 ++-- R/batchGenerateCI2IFC.R | 49 ++-- R/ci-inputs.R | 13 + R/computeCumulativeCICorrelation.R | 81 +++---- R/computeInfoVal2IFC.R | 87 ++++---- R/generateCI.R | 120 +++++------ R/generateCI2IFC.R | 65 +++--- R/generateCINoise.R | 5 R/generateNoiseImage.R | 4 R/generateNoisePattern.R | 34 ++- R/generateReferenceDistribution.R | 111 +++++----- R/generateStimuli2IFC.R | 52 ++-- R/plotZmap.R | 40 ++- R/rcicr-package.R | 10 R/rdata.R | 152 ++++++++++++++ R/reference-base.R | 36 +++ R/simulateNoiseIntensities.R | 2 R/stimulus-lock.R |only README.md | 130 +++--------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/getting-started.R | 2 inst/doc/getting-started.Rmd | 77 ++----- inst/doc/getting-started.html | 123 ++++++----- inst/doc/reverse-correlation-walkthrough.Rmd | 203 ++++++------------- inst/doc/reverse-correlation-walkthrough.html | 273 ++++++++++++-------------- man/autoscale.Rd | 30 +- man/batchGenerateCI.Rd | 32 +-- man/batchGenerateCI2IFC.Rd | 32 +-- man/computeCumulativeCICorrelation.Rd | 79 +++---- man/computeInfoVal2IFC.Rd | 82 +++---- man/generateCI.Rd | 120 +++++------ man/generateCI2IFC.Rd | 65 +++--- man/generateCINoise.Rd | 5 man/generateNoiseImage.Rd | 4 man/generateNoisePattern.Rd | 15 - man/generateReferenceDistribution2IFC.Rd | 108 +++++----- man/generateStimuli2IFC.Rd | 40 +-- man/plotZmap.Rd | 40 ++- man/rcicr-package.Rd | 10 man/simulateNoiseIntensities.Rd | 2 tests/testthat/test-batch-tibble.R |only tests/testthat/test-ci-inputs.R | 43 ++++ tests/testthat/test-generateNoisePattern.R | 38 +++ tests/testthat/test-rdata-safe-save.R |only tests/testthat/test-seedless-reference.R |only tests/testthat/test-stimulus-lock.R |only vignettes/getting-started.Rmd | 77 ++----- vignettes/reverse-correlation-walkthrough.Rmd | 203 ++++++------------- 53 files changed, 1504 insertions(+), 1414 deletions(-)
Title: Use Image in 'ggplot2'
Description: Supports image files and graphic objects to be visualized in
'ggplot2' graphic system.
Author: Guangchuang Yu [aut, cre, cph] ,
Shuangbin Xu [ctb] ,
Yonghe Xia [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggimage versions 0.3.5 dated 2026-01-08 and 0.3.6 dated 2026-09-27
DESCRIPTION | 10 MD5 | 120 +- NAMESPACE | 181 ++-- R/color_image.R | 46 - R/draw_key.R | 220 +++-- R/geom_bgimage.R | 47 - R/geom_emoji.R | 38 R/geom_flag.R | 224 ++--- R/geom_icon.R | 64 - R/geom_image.R | 1635 ++++++++++++++++++++++++++------------- R/geom_image_repel.R |only R/geom_interactive.R | 248 +++-- R/geom_phylopic.R | 701 +++++++++++----- R/geom_pokemon.R | 88 +- R/geom_subview.R | 219 ++--- R/geom_twitchemote.R | 84 +- R/ggbackground.R | 52 - R/ggimage-package.R | 6 R/ggpreview.R | 84 +- R/image_read2.R | 106 +- R/reexport.R | 14 R/theme.R | 86 +- R/utilities.R | 266 +++++- inst/extdata/medals.txt | 62 - man/GeomInteractiveImage.Rd | 18 man/autocomplete_name.Rd | 38 man/download_phylopic.Rd | 67 - man/draw_key.Rd | 54 - man/geom_bgimage.Rd | 40 man/geom_emoji.Rd | 74 - man/geom_flag.Rd | 74 - man/geom_icon.Rd | 74 - man/geom_image.Rd | 162 ++- man/geom_image_interactive.Rd | 66 - man/geom_image_repel.Rd |only man/geom_phylopic.Rd | 82 - man/geom_phylopic_interactive.Rd | 30 man/geom_pokemon.Rd | 74 - man/geom_subview.Rd | 80 - man/geom_worldcup2018.Rd | 74 - man/get_image_cache_policy.Rd |only man/get_image_cache_stats.Rd |only man/ggbackground.Rd | 48 - man/ggimage-package.Rd | 63 - man/ggpreview.Rd | 74 - man/image_read2.Rd | 48 - man/list.flag.Rd | 34 man/list.icon.Rd | 34 man/list.pokemon.Rd | 34 man/list.worldcup2018.Rd | 34 man/phylopic_uid.Rd | 48 - man/reexports.Rd | 34 man/reset_image_cache_stats.Rd |only man/theme_nothing.Rd | 44 - man/theme_transparent.Rd | 40 tests |only 56 files changed, 3727 insertions(+), 2416 deletions(-)
Title: Multivariate ANalysis of VAriance with Ridge Regularization for
Semicontinuous High-Dimensional Data
Description: Implements Multivariate ANalysis Of VAriance (MANOVA) parameters' inference and test with regularization for semicontinuous high-dimensional data. The method can be applied also in presence of low-dimensional data. The p-value can be obtained through asymptotic distribution or using a permutation procedure. The package gives also the possibility to simulate this type of data. Method is described in Elena Sabbioni, Claudio Agostinelli and Alessio Farcomeni (2025) A regularized MANOVA test for semicontinuous high-dimensional data. Biometrical Journal, 67:e70054. DOI <doi:10.1002/bimj.70054>, arXiv DOI <doi:10.48550/arXiv.2401.04036>.
Author: Elena Sabbioni [aut, cre] ,
Claudio Agostinelli [aut] ,
Alessio Farcomeni [aut]
Maintainer: Elena Sabbioni <elena.sabbioni@stats.ox.ac.uk>
Diff between semicontMANOVA versions 0.2 dated 2025-06-11 and 0.2-1 dated 2026-09-27
DESCRIPTION | 10 +++++----- MD5 | 6 ++++-- NAMESPACE | 1 - R/is.positive.definite.R |only inst |only 5 files changed, 9 insertions(+), 8 deletions(-)
More information about semicontMANOVA at CRAN
Permanent link
Title: SQL Parsing, Analysis and Dialect Translation
Description: Parse, tokenize, validate, format, analyze and translate SQL
between more than 30 dialects ('PostgreSQL', 'MySQL', 'BigQuery',
'Snowflake', 'DuckDB', 'T-SQL', and others) using the 'polyglot-sql'
Rust crate <https://github.com/tobilg/polyglot>, a Rust port of the
'SQLGlot' 'Python' library. All processing happens locally in the R
session; no database connection, 'Python' runtime or external service
is required. Includes column-level lineage, structural query
analysis, query optimization, 'AST' diffing and 'OpenLineage' facet
generation.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut],
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Tobias Mueller [cph] ),
Toby Mao [cph] ,
The authors of the vendored Rust dependencies [cph]
Maintainer: Andre Leite <leite@castlab.org>
Diff between polyglotSQL versions 0.1.0 dated 2026-08-04 and 0.1.1 dated 2026-09-27
DESCRIPTION | 8 +-- MD5 | 34 ++++++------- NEWS.md | 24 +++++++++ R/parse.R | 5 + inst/COPYRIGHTS | 4 - inst/WORDLIST | 37 +++++++------- inst/doc/getting-started.html | 2 inst/doc/installation-and-troubleshooting.Rmd | 2 inst/doc/installation-and-troubleshooting.html | 2 inst/doc/parsing-validation-lineage.html | 2 man/sql_validate.Rd | 5 + src/rust/Cargo.lock | 8 +-- src/rust/Cargo.toml | 2 src/rust/src/lib.rs | 22 ++++++++ src/rust/vendor.tar.xz |binary tests/testthat/test-validate.R | 18 ++++++- tools/config.R | 64 +++++++++++++++++++++---- vignettes/installation-and-troubleshooting.Rmd | 2 18 files changed, 179 insertions(+), 62 deletions(-)
Title: Multiple-Instance Learning with Support Vector Machines
Description: Weakly supervised (WS), multiple instance (MI) data lives in
numerous interesting applications such as drug discovery, object
detection, and tumor prediction on whole slide images. The 'mildsvm'
package provides an easy way to learn from this data by training
Support Vector Machine (SVM)-based classifiers. It also contains
helpful functions for building and printing multiple instance data
frames. The core methods from 'mildsvm' come from the following
references: Kent and Yu (2024) <doi:10.1214/24-AOAS1876>; Xiao, Liu, and Hao
(2018) <doi:10.1109/TNNLS.2017.2766164>; Muandet et al. (2012)
<https://proceedings.neurips.cc/paper/2012/file/9bf31c7ff062936a96d3c8bd1f8f2ff3-Paper.pdf>;
Chu and Keerthi (2007) <doi:10.1162/neco.2007.19.3.792>; and Andrews
et al. (2003)
<https://papers.nips.cc/paper/2232-support-vector-machines-for-multiple-instance-learning.pdf>.
Many functions use the 'Gurobi' optimization back-end to improve the
optimization problem speed; the ' [...truncated...]
Author: Sean Kent [aut, cre] ,
Yifei Liou [aut]
Maintainer: Sean Kent <skent259@gmail.com>
Diff between mildsvm versions 0.4.1 dated 2025-08-19 and 0.4.2 dated 2026-09-27
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS.md | 4 ++++ build/partial.rdb |binary man/formatting.Rd | 2 +- man/kfm_exact.Rd | 4 ++-- man/kfm_nystrom.Rd | 4 ++-- man/mi.Rd | 4 ++-- man/mild.Rd | 4 ++-- man/mildsvm-package.Rd | 1 + tests/testthat/_snaps/examples.md | 11 +++++++---- tests/testthat/_snaps/svor_exc.md | 14 +++++++------- tests/testthat/test-feature_map.R | 8 ++++---- 13 files changed, 48 insertions(+), 40 deletions(-)
Title: Graph-Constrained Functional Pruning Optimal Partitioning
Description: Penalized parametric change-point detection by functional pruning dynamic programming algorithm. The successive means are constrained using a graph structure with edges defining the nature of the changes These changes can be unconstrained (type std), up or down constrained (type up and down) or constrained by a minimal size jump (type abs). The type null means that the graph allows us to stay on the same segment. To each edge we can associate some additional properties: a minimal gap size, a penalty, some robust parameters (K,a) for biweight (K) and Huber losses (K and a). The user can also constrain the inferred means to lie between some minimal and maximal values. Data is modeled by a cost with possible use of a robust loss, biweight and Huber (see edge parameters K and a). These costs should have a quadratic, log-linear or a log-log representation. This includes quadratic Gaussian cost (type = 'mean'), log-linear cost (type = 'variance', 'poisson' or 'exp') and log-log cost (type = [...truncated...]
Author: Vincent Runge [aut, cre],
Toby Hocking [aut],
Guillem Rigaill [aut],
Daniel Grose [aut],
Gaetano Romano [aut],
Fatemeh Afghah [aut],
Paul Fearnhead [aut],
Michel Koskas [ctb],
Arnaud Liehrmann [ctb]
Maintainer: Vincent Runge <vincent.runge@univ-evry.fr>
This is a re-admission after prior archival of version 1.1.1 dated 2023-03-27
Diff between gfpop versions 1.1.1 dated 2023-03-27 and 1.1.2 dated 2026-09-27
DESCRIPTION | 14 ++++++++------ MD5 | 22 ++++++++++++++++++++-- build |only data |only inst/doc |only man/ECG.Rd |only man/Mono27ac.Rd |only man/neuroSpike.Rd |only man/profile614chr2.Rd |only tests/testthat/test-sn.R | 7 +------ vignettes |only 11 files changed, 29 insertions(+), 14 deletions(-)
Title: Download Geographic Data on Various Topics Provided and Managed
by the Spatial Data Infrastructure of Peru
Description: Provides R users with easy access to official cartographic
data from Peru across a range of topics, including society, transport,
environment, agriculture, climate, and more. It also includes data
from regional government entities and technical-scientific
institutions, all managed by Peru's Spatial Data Infrastructure. For
more information, please visit:
<https://www.geoidep.gob.pe/>.
Author: antony barja [aut, cre, cph]
Maintainer: antony barja <geografo.pe@gmail.com>
This is a re-admission after prior archival of version 0.3.0 dated 2024-09-22
Diff between geoidep versions 0.3.0 dated 2024-09-22 and 0.4.0 dated 2026-09-27
geoidep-0.3.0/geoidep/R/get_data_sources.R |only geoidep-0.3.0/geoidep/R/get_departaments.R |only geoidep-0.3.0/geoidep/R/get_districts.R |only geoidep-0.3.0/geoidep/R/get_early_warning.R |only geoidep-0.3.0/geoidep/R/get_forest_fire_data.R |only geoidep-0.3.0/geoidep/R/get_forest_loss_data.R |only geoidep-0.3.0/geoidep/R/get_hotspots_data.R |only geoidep-0.3.0/geoidep/R/get_midagri_data.R |only geoidep-0.3.0/geoidep/R/get_providers.R |only geoidep-0.3.0/geoidep/R/get_provinces.R |only geoidep-0.3.0/geoidep/R/get_sernanp_data.R |only geoidep-0.3.0/geoidep/inst/doc/article.R |only geoidep-0.3.0/geoidep/inst/doc/article.Rmd |only geoidep-0.3.0/geoidep/inst/doc/article.html |only geoidep-0.3.0/geoidep/man/as_data_time.Rd |only geoidep-0.3.0/geoidep/man/figures/fig-timeserie-1.png |only geoidep-0.3.0/geoidep/man/figures/geoidep.svg |only geoidep-0.3.0/geoidep/man/figures/idesep.png |only geoidep-0.3.0/geoidep/man/figures/testing.svg |only geoidep-0.3.0/geoidep/man/get_data.Rd |only geoidep-0.3.0/geoidep/man/get_early_warning_link.Rd |only geoidep-0.3.0/geoidep/man/get_forest_fire_data.Rd |only geoidep-0.3.0/geoidep/man/get_forest_fire_link.Rd |only geoidep-0.3.0/geoidep/man/get_geobosque_link.Rd |only geoidep-0.3.0/geoidep/man/get_heat_spot_link.Rd |only geoidep-0.3.0/geoidep/man/get_inei_link.Rd |only geoidep-0.3.0/geoidep/man/get_midagri_data.Rd |only geoidep-0.3.0/geoidep/man/get_midagri_link.Rd |only geoidep-0.3.0/geoidep/man/get_sernanp_link.Rd |only geoidep-0.3.0/geoidep/man/global-variables.Rd |only geoidep-0.3.0/geoidep/tests/testthat/test-get_departaments.R |only geoidep-0.3.0/geoidep/tests/testthat/test-get_provinces.R |only geoidep-0.3.0/geoidep/vignettes/article.Rmd |only geoidep-0.4.0/geoidep/DESCRIPTION | 36 geoidep-0.4.0/geoidep/MD5 | 121 geoidep-0.4.0/geoidep/NAMESPACE | 19 geoidep-0.4.0/geoidep/NEWS.md | 20 geoidep-0.4.0/geoidep/R/geobosque.R |only geoidep-0.4.0/geoidep/R/geoidep-package.R |only geoidep-0.4.0/geoidep/R/inaigem.R |only geoidep-0.4.0/geoidep/R/inei.R |only geoidep-0.4.0/geoidep/R/mapbiomas-alerta.R |only geoidep-0.4.0/geoidep/R/mapbiomas-fire.R |only geoidep-0.4.0/geoidep/R/mapbiomas-lulc.R |only geoidep-0.4.0/geoidep/R/mtc.R |only geoidep-0.4.0/geoidep/R/providers.R |only geoidep-0.4.0/geoidep/R/senamhi.R |only geoidep-0.4.0/geoidep/R/serfor.R |only geoidep-0.4.0/geoidep/R/sernanp.R |only geoidep-0.4.0/geoidep/R/sysdata.rda |only geoidep-0.4.0/geoidep/R/utils.R | 431 geoidep-0.4.0/geoidep/R/zzz.R | 38 geoidep-0.4.0/geoidep/README.md | 110 geoidep-0.4.0/geoidep/build/vignette.rds |binary geoidep-0.4.0/geoidep/inst/doc/geoidep.R | 68 geoidep-0.4.0/geoidep/inst/doc/geoidep.Rmd | 91 geoidep-0.4.0/geoidep/inst/doc/geoidep.html |15142 ++++++++-- geoidep-0.4.0/geoidep/inst/sources-idep/sources_geoidep.csv | 82 geoidep-0.4.0/geoidep/man/figures/geoidep_logo_b.png |only geoidep-0.4.0/geoidep/man/figures/geoidep_logo_o.png |only geoidep-0.4.0/geoidep/man/figures/lifecycle-deprecated.svg |only geoidep-0.4.0/geoidep/man/figures/lifecycle-experimental.svg |only geoidep-0.4.0/geoidep/man/figures/lifecycle-stable.svg |only geoidep-0.4.0/geoidep/man/figures/lifecycle-superseded.svg |only geoidep-0.4.0/geoidep/man/geoidep-package.Rd |only geoidep-0.4.0/geoidep/man/get_data_sources.Rd | 8 geoidep-0.4.0/geoidep/man/get_departaments.Rd | 72 geoidep-0.4.0/geoidep/man/get_districts.Rd | 84 geoidep-0.4.0/geoidep/man/get_early_warning.Rd | 21 geoidep-0.4.0/geoidep/man/get_forest_loss_data.Rd | 35 geoidep-0.4.0/geoidep/man/get_hotspots_data.Rd | 60 geoidep-0.4.0/geoidep/man/get_inaigem_data.Rd |only geoidep-0.4.0/geoidep/man/get_mapbiomas_alert_images.Rd |only geoidep-0.4.0/geoidep/man/get_mapbiomas_peru_alerta.Rd |only geoidep-0.4.0/geoidep/man/get_mapbiomas_peru_fire.Rd |only geoidep-0.4.0/geoidep/man/get_mapbiomas_peru_fire_legend.Rd |only geoidep-0.4.0/geoidep/man/get_mapbiomas_peru_fire_products.Rd |only geoidep-0.4.0/geoidep/man/get_mapbiomas_peru_lulc.Rd |only geoidep-0.4.0/geoidep/man/get_mapbiomas_peru_lulc_series.Rd |only geoidep-0.4.0/geoidep/man/get_mtc_data.Rd |only geoidep-0.4.0/geoidep/man/get_providers.Rd | 46 geoidep-0.4.0/geoidep/man/get_provinces.Rd | 73 geoidep-0.4.0/geoidep/man/get_sernanp_data.Rd | 72 geoidep-0.4.0/geoidep/man/scale_fill_mapbiomas_peru_fire_d.Rd |only geoidep-0.4.0/geoidep/man/scale_fill_mapbiomas_peru_lulc_d.Rd |only geoidep-0.4.0/geoidep/man/senamhi_alert_by_number.Rd |only geoidep-0.4.0/geoidep/man/senamhi_alerts_by_year.Rd |only geoidep-0.4.0/geoidep/man/senamhi_geometry_by_level.Rd |only geoidep-0.4.0/geoidep/man/senamhi_get_meteorological_table.Rd |only geoidep-0.4.0/geoidep/man/senamhi_get_spatial_alerts.Rd |only geoidep-0.4.0/geoidep/tests/testthat.R |only geoidep-0.4.0/geoidep/tests/testthat/test-get_data_sources.R |only geoidep-0.4.0/geoidep/tests/testthat/test-get_districts.R | 16 geoidep-0.4.0/geoidep/tests/testthat/test-get_forest_loss_data.R |only geoidep-0.4.0/geoidep/tests/testthat/test-get_hotspots_data.R |only geoidep-0.4.0/geoidep/tests/testthat/test-get_providers.R |only geoidep-0.4.0/geoidep/tests/testthat/test-get_sernanp.R |only geoidep-0.4.0/geoidep/tests/testthat/test-utils.R |only geoidep-0.4.0/geoidep/tests/testthat/test-zzz.R |only geoidep-0.4.0/geoidep/vignettes/geoidep.Rmd | 91 100 files changed, 13472 insertions(+), 3264 deletions(-)
Title: Analysis of Variance for Univariate and Multivariate Functional
Data
Description: Performs analysis of variance testing procedures for univariate and multivariate functional data (Cuesta-Albertos and Febrero-Bande (2010) <doi:10.1007/s11749-010-0185-3>, Gorecki and Smaga (2015) <doi:10.1007/s00180-015-0555-0>, Gorecki and Smaga (2017) <doi:10.1080/02664763.2016.1247791>, Zhang et al. (2018) <doi:10.1016/j.csda.2018.05.004>).
Author: Tomasz Gorecki [aut],
Lukasz Smaga [aut, cre]
Maintainer: Lukasz Smaga <ls@amu.edu.pl>
Diff between fdANOVA versions 0.1.2 dated 2018-08-29 and 0.1.3 dated 2026-09-27
DESCRIPTION | 13 MD5 | 26 R/plot_fanovatests.R | 92 +-- R/plot_fmanovatrp.R | 142 ++--- build/vignette.rds |binary inst/doc/fdANOVA.R | 15 inst/doc/fdANOVA.Rnw | 1204 ++++++++++++++++++++++----------------------- inst/doc/fdANOVA.pdf |binary man/fanova.tests.Rd | 530 +++++++++---------- man/fmanova.ptbfr.Rd | 340 ++++++------ man/print.fanovatests.Rd | 106 +-- man/summary.fanovatests.Rd | 106 +-- vignettes/fdANOVA.Rnw | 1204 ++++++++++++++++++++++----------------------- vignettes/fdANOVA.bib | 18 14 files changed, 1897 insertions(+), 1899 deletions(-)
Title: Connect to the Taxonomic Services of the Spanish Inventory of
Natural Patrimony and Biodiversity
Description: Provides access to 'EIDOS' <https://iepnb.gob.es/areas-tematicas/especies-silvestres/eidos>, the taxonomic information service from the Spanish Inventory of Natural Patrimony and Biodiversity. This package includes a suite of functions that help retrieve species' taxonomic and conservation information from 'EIDOS' and match taxa names against the checklists available in the database. More information can be found at Miranda Cebrián, H. (2025) <doi:10.7818/ECOS.3134>.
Author: Hector Miranda-Cebrian [aut, cre, cph]
Maintainer: Hector Miranda-Cebrian <hectorm94@gmail.com>
Diff between eidosapi versions 1.2.0 dated 2026-09-11 and 1.2.1 dated 2026-09-27
DESCRIPTION | 8 - MD5 | 24 ++--- R/eidos_clean_checklist.R | 44 +++++---- R/eidos_conservation_by_id.R | 65 ++++++------- R/eidos_fuzzy_names.R | 180 +++++++++++++++++++------------------ R/eidos_legal_status_by_id.R | 89 +++++++++--------- R/eidos_tables.R | 71 ++++++-------- R/eidos_taxon_by_id.R | 80 ++++++++-------- R/eidos_taxon_by_name.R | 206 ++++++++++++++++++++++--------------------- R/utils.R | 119 ++++++------------------ man/eidos_fuzzy_names.Rd | 20 ++-- man/eidos_tables.Rd | 4 man/eidos_taxon_by_name.Rd | 2 13 files changed, 437 insertions(+), 475 deletions(-)
Title: Generic Implementation of a PK/PD Model
Description: A generic, easy-to-use and expandable implementation of a
pharmacokinetic (PK) / pharmacodynamic (PD) model based on the S4
class system. This package allows the user to read and write
pharmacometric models from and to files, including a JSON-based
interface to import Campsis models defined using a formal JSON schema
distributed with the package. Models can be adapted further on the fly
in the R environment using an intuitive API to add, modify or delete
equations, ordinary differential equations (ODEs), model parameters or
compartment properties (such as infusion duration or rate,
bioavailability and initial values). The package also provides export
facilities for use with the simulation packages 'rxode2' and
'mrgsolve'. The package itself is licensed under the GPL (>= 3); the
JSON schema file shipped in inst/extdata is licensed separately under
the Creative Commons Attribution 4.0 International (CC BY 4.0). This
package is designed and intended to be used with the package
'campsi [...truncated...]
Author: Nicolas Luyckx [aut, cre]
Maintainer: Nicolas Luyckx <nicolas.luyckx@calvagone.com>
Diff between campsismod versions 1.4.0 dated 2026-07-30 and 1.4.1 dated 2026-09-27
DESCRIPTION | 8 MD5 | 213 +++---- NAMESPACE | 125 ++-- NEWS.md | 3 R/campsis_model.R | 314 +++++----- R/check.R | 14 R/code_record.R | 168 ++--- R/code_records.R | 243 ++++---- R/compartment.R | 23 R/compartment_bioavailability.R | 18 R/compartment_infusion_duration.R | 17 R/compartment_infusion_rate.R | 17 R/compartment_initial_condition.R | 32 - R/compartment_lag_time.R | 18 R/compartment_properties.R | 53 - R/compartment_property.R | 51 - R/compartments.R | 49 - R/data.R | 3 R/deprecated_methods.R | 146 ++-- R/generic.R | 49 - R/generic_element_list.R | 11 R/generic_element_position.R | 46 - R/generic_list.R | 95 +-- R/global.R | 11 R/json_element.R | 13 R/json_interface.R | 210 +++--- R/model_add_suffix.R | 302 +++++---- R/model_comment.R | 20 R/model_equation.R | 43 - R/model_if_statement.R | 39 - R/model_line_break.R | 19 R/model_ode.R | 30 R/model_parser.R | 64 -- R/model_statement.R | 35 - R/model_statements.R | 17 R/model_unknown_statement.R | 36 - R/mrgsolve_conversion.R | 77 +- R/mrgsolve_model.R | 38 - R/omega_block.R | 43 - R/omega_blocks.R | 40 - R/parameter.R | 407 ++++++++----- R/parameter_uncertainty_utils.R | 320 +++++----- R/parameters.R | 695 +++++++++++++---------- R/pattern.R | 54 + R/replicated_campsis_model.R | 283 ++++----- R/replication_settings.R | 112 ++- R/rxode_conversion.R | 51 - R/rxode_model.R | 3 R/special_operators.R | 7 R/utilities.R | 83 +- README.md | 20 inst/doc/campsismod.R | 8 inst/doc/campsismod.Rmd | 8 inst/doc/campsismod.html | 8 inst/doc/v01_model_creation.R | 20 inst/doc/v01_model_creation.Rmd | 20 inst/doc/v01_model_creation.html | 14 inst/doc/v02_structural_model.R | 12 inst/doc/v02_structural_model.Rmd | 12 inst/doc/v02_structural_model.html | 12 inst/doc/v03_model_adaptation.R | 10 inst/doc/v03_model_adaptation.Rmd | 10 inst/doc/v03_model_adaptation.html | 8 inst/doc/v04_compartment_properties.R | 28 inst/doc/v04_compartment_properties.Rmd | 30 inst/doc/v04_compartment_properties.html | 28 inst/doc/v05_parameters.R | 25 inst/doc/v05_parameters.Rmd | 25 inst/doc/v05_parameters.html | 25 inst/doc/v06_append_pd_model.R | 10 inst/doc/v06_append_pd_model.Rmd | 12 inst/doc/v06_append_pd_model.html | 8 man/AutoReplicationSettings.Rd | 10 man/double_array_parameter-class.Rd | 4 man/is_matrix_positive_definite.Rd | 8 man/is_strict_record_delimiter.Rd | 4 man/model_suite.Rd | 2 tests/testthat/Rplots.pdf |only tests/testthat/test-add_suffix.R | 81 +- tests/testthat/test-campsis_model.R | 152 ++--- tests/testthat/test-code_records.R | 113 +-- tests/testthat/test-compartments.R | 52 - tests/testthat/test-generic_list.R | 31 - tests/testthat/test-json_interface.R | 62 -- tests/testthat/test-miscellaneous.R | 90 +- tests/testthat/test-model_library.R | 4 tests/testthat/test-model_parser.R | 5 tests/testthat/test-mrgsolve_conversion.R | 35 - tests/testthat/test-nonmem_conversion.R | 28 tests/testthat/test-parameter.R | 126 ++-- tests/testthat/test-parameters.R | 318 +++++----- tests/testthat/test-pattern.R | 17 tests/testthat/test-read_write.R | 84 +- tests/testthat/test-record_delimiters.R | 24 tests/testthat/test-replicated_campsis_model.R | 460 +++++++-------- tests/testthat/test-rxode_conversion.R | 45 - tests/testthat/test-show_uncertainty.R | 57 + tests/testthat/test-simulation_time_conversion.R | 39 - tests/testthat/test-utilities.R | 27 tests/testthat/test-utils.R | 19 tests/testthat/test-warnings.R | 46 + vignettes/campsismod.Rmd | 8 vignettes/v01_model_creation.Rmd | 20 vignettes/v02_structural_model.Rmd | 12 vignettes/v03_model_adaptation.Rmd | 10 vignettes/v04_compartment_properties.Rmd | 30 vignettes/v05_parameters.Rmd | 25 vignettes/v06_append_pd_model.Rmd | 12 108 files changed, 3806 insertions(+), 3375 deletions(-)
Title: Occurrence Data Cleaning
Description: Flags and checks occurrence data that are in Darwin Core
format. The package includes generic functions and data as well as
some that are specific to bees. This package is meant to build upon
and be complimentary to other excellent occurrence cleaning packages,
including 'bdc' and 'CoordinateCleaner'. This package uses datasets
from several sources and particularly from the Discover Life Website,
created by Ascher and Pickering (2020). For further information,
please see the original publication and package website. Publication
- Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package
website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.
Author: James B. Dorey [aut, cre, cph] ,
Robert L. O'Reilly [aut] ,
Silas Bossert [aut] ,
Erica E. Fischer [aut]
Maintainer: James B. Dorey <jbdorey@me.com>
Diff between BeeBDC versions 1.3.4 dated 2026-05-22 and 1.3.5 dated 2026-09-27
DESCRIPTION | 10 - MD5 | 209 +++++++++++++++---------------- NAMESPACE | 123 ++++++++++-------- NEWS.md | 18 +- R/BeeBDCQuery.R | 16 +- R/ChaoWrapper.R | 14 -- R/FlagManager.R | 14 +- R/GBIFissues.R | 6 R/HarmoniseR.R | 42 ++---- R/PaigeIntegrateR.R | 11 - R/PaigesSyns.R | 2 R/StateOutliers.R | 12 - R/USGS_formatter.R | 43 ++---- R/additionalData_readRs.R | 111 +++------------- R/atlasDownloader.R | 12 - R/attr_builder.R | 3 R/aux_functions.R | 24 +-- R/beesChecklist.R | 28 ++-- R/beesTaxonomy.R | 24 +-- R/chordDiagramR.R | 12 - R/continentOutliers.R | 20 +- R/coordUncerFlagR.R | 3 R/countryNameCleanR.R | 2 R/countryOutliers.R | 22 +-- R/dataProvTables.R | 1 R/dataReader.R | 2 R/dateFindR.R | 17 +- R/deSimplifieR.R | 1 R/diagonAlley.R | 12 - R/dirMaker.R | 16 +- R/dupePlotR.R | 10 - R/dupeSummary.R | 58 ++++---- R/flagAbsent.R | 3 R/flagLicense.R | 12 - R/flagRecorder.R | 14 -- R/flagSummaryTable.R | 8 - R/flag_converter.R | 1 R/formattedCombiner.R | 10 - R/ggRichnessWrapper.R | 8 - R/iNEXTwrapper.R | 14 -- R/idMatchR.R | 17 +- R/importOccurrences.R | 24 +-- R/interactiveMapR.R | 9 - R/jbd_CfC_chunker.R | 10 - R/jbd_Ctrans_chunker.R | 11 - R/jbd_coordCountryInconsistent.R | 31 +--- R/jbd_coordinates_precision.R | 4 R/jbd_coordinates_transposed.R | 9 - R/jbd_correct_coordinates.R | 2 R/jbd_create_figures.R | 19 +- R/manualOutlierFindeR.R | 8 - R/nameSplitR.R | 1 R/plotFlagSummary.R | 23 +-- R/repoFinder.R | 1 R/repoMerge.R | 7 - R/richnessEstimateR.R | 28 +--- R/richnessPrepR.R | 8 - R/summaryFun.R | 8 - R/summaryMaps.R | 24 +-- R/taxadbToBeeBDC.R | 48 +++---- R/taxoDuplicator.R | 59 ++++++-- R/taxoMergeR.R | 13 - R/utils.R | 19 ++ README.md | 6 inst/CITATION | 4 man/continentOutlieRs.Rd | 2 man/countryOutlieRs.Rd | 2 man/flagRecorder.Rd | 2 man/jbd_CfC_chunker.Rd | 2 man/jbd_Ctrans_chunker.Rd | 2 man/jbd_coordCountryInconsistent.Rd | 2 man/summaryMaps.Rd | 2 man/taxadbToBeeBDC.Rd | 14 +- tests/testthat.R | 4 tests/testthat/setup.R |only tests/testthat/test-BeeBDCQuery.R | 3 tests/testthat/test-ColTypeR.R | 1 tests/testthat/test-GBIFissues.R | 2 tests/testthat/test-HarmoniseR.R | 1 tests/testthat/test-PaigeIntegrater.R | 3 tests/testthat/test-continentOutlieRs.R | 4 tests/testthat/test-coordUncerFlagR.R | 2 tests/testthat/test-countryNameCleanR.R | 9 - tests/testthat/test-countryOutlieRs.R | 4 tests/testthat/test-dataSaver.R | 5 tests/testthat/test-dateFindR.R | 8 - tests/testthat/test-diagonAlley.R | 3 tests/testthat/test-dupePlotR.R | 8 - tests/testthat/test-dupeSummary.R | 1 tests/testthat/test-fileFinder.R | 4 tests/testthat/test-flagAbsent.R | 2 tests/testthat/test-flagLicense.R | 2 tests/testthat/test-flagSummaryTable.R | 1 tests/testthat/test-formattedCombiner.R | 5 tests/testthat/test-idMatchR.R | 2 tests/testthat/test-interactiveMapR.R | 4 tests/testthat/test-jbd_CfC_chunker.R | 5 tests/testthat/test-jbd_Ctrans_chunker.R | 3 tests/testthat/test-jbd_create_figures.R | 1 tests/testthat/test-plotFlagSummary.R | 3 tests/testthat/test-readr_BeeBDC.R | 6 tests/testthat/test-repoFinder.R | 2 tests/testthat/test-richnessPrepR.R | 1 tests/testthat/test-summaryFun.R | 2 tests/testthat/test-summaryMaps.R | 8 - tests/testthat/test-taxadbToBeeBDC.R | 15 -- 106 files changed, 655 insertions(+), 858 deletions(-)
Title: Harness ArcGIS Data Services
Description: Enables users of 'ArcGIS Enterprise', 'ArcGIS Online', or
'ArcGIS Platform' to read, write, publish, or manage vector and raster
data via ArcGIS location services REST API endpoints
<https://developers.arcgis.com/rest/>.
Author: Josiah Parry [aut, cre] ,
Eli Pousson [ctb] ,
Kenneth Vernon [ctb] ,
Martha Bass [ctb] ,
Antony Barja [ctb] ,
Ryan Zomorrodi [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcgislayers versions 0.6.1 dated 2026-07-10 and 0.7.0 dated 2026-09-27
arcgislayers-0.6.1/arcgislayers/tests/testthat/_snaps |only arcgislayers-0.7.0/arcgislayers/DESCRIPTION | 17 - arcgislayers-0.7.0/arcgislayers/MD5 | 60 +++-- arcgislayers-0.7.0/arcgislayers/NAMESPACE | 3 arcgislayers-0.7.0/arcgislayers/NEWS.md | 13 + arcgislayers-0.7.0/arcgislayers/R/arc-definition.R | 61 ----- arcgislayers-0.7.0/arcgislayers/R/arc-read.R | 6 arcgislayers-0.7.0/arcgislayers/R/arc-select.R | 110 +++++++++- arcgislayers-0.7.0/arcgislayers/R/attachments.R | 77 ++----- arcgislayers-0.7.0/arcgislayers/R/parquet-layer.R |only arcgislayers-0.7.0/arcgislayers/R/sf-methods.R | 32 -- arcgislayers-0.7.0/arcgislayers/man/arc_count.Rd |only arcgislayers-0.7.0/arcgislayers/man/arc_raster.Rd | 2 arcgislayers-0.7.0/arcgislayers/man/arc_select.Rd | 8 arcgislayers-0.7.0/arcgislayers/man/encode_field_values.Rd | 4 arcgislayers-0.7.0/arcgislayers/man/figures/logo.png |only arcgislayers-0.7.0/arcgislayers/man/parquet.Rd |only arcgislayers-0.7.0/arcgislayers/man/set_layer_aliases.Rd | 2 arcgislayers-0.7.0/arcgislayers/man/spatial_filter.Rd | 2 arcgislayers-0.7.0/arcgislayers/tests/testthat.R | 4 arcgislayers-0.7.0/arcgislayers/tests/testthat/helper-layers.R |only arcgislayers-0.7.0/arcgislayers/tests/testthat/test-arc-count.R |only arcgislayers-0.7.0/arcgislayers/tests/testthat/test-arc_select.R | 13 + arcgislayers-0.7.0/arcgislayers/tests/testthat/test-attachment-validation.R |only arcgislayers-0.7.0/arcgislayers/tests/testthat/test-chunking.R |only arcgislayers-0.7.0/arcgislayers/tests/testthat/test-create-feature-service.R | 6 arcgislayers-0.7.0/arcgislayers/tests/testthat/test-distinct-values.R |only arcgislayers-0.7.0/arcgislayers/tests/testthat/test-esri-authority-crs.R |only arcgislayers-0.7.0/arcgislayers/tests/testthat/test-get-all-layers.R | 37 ++- arcgislayers-0.7.0/arcgislayers/tests/testthat/test-get-layer.R | 99 ++++----- arcgislayers-0.7.0/arcgislayers/tests/testthat/test-get-layers.R | 99 ++++----- arcgislayers-0.7.0/arcgislayers/tests/testthat/test-json-correctness.R | 51 ++++ arcgislayers-0.7.0/arcgislayers/tests/testthat/test-map-services.R | 36 +-- arcgislayers-0.7.0/arcgislayers/tests/testthat/test-resp-failures.R |only arcgislayers-0.7.0/arcgislayers/tests/testthat/test-select-no-fields.R |only 35 files changed, 429 insertions(+), 313 deletions(-)
Title: Hierarchical and Variation Partitioning for Canonical Analysis
Description: This function conducts variation partitioning and hierarchical partitioning to calculate the unique, shared (referred as to "common") and individual contributions of each predictor (or matrix) towards explained variation (R-square and adjusted R-square) on canonical analysis (RDA,CCA and db-RDA), applying the algorithm of Lai J.,Zou Y., Zhang J.,Peres-Neto P.(2022) Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package.Methods in Ecology and Evolution,13: 782-788 <DOI:10.1111/2041-210X.13800>.
Author: Jiangshan Lai [aut, cre] ,
Kim Nimon [aut],
Yao Liu [aut],
Pedro Peres-Neto [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between rdacca.hp versions 1.1-3 dated 2026-04-21 and 1.1-4 dated 2026-09-27
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/CITATION | 20 ++++++++++---------- 3 files changed, 16 insertions(+), 16 deletions(-)
Title: Linear Latent Non-Gaussian Models with Flexible Distributions
Description: Fits and analyzes linear latent non-Gaussian models for
temporal, spatial, and space-time data. The package provides model
components for autoregressive and Ornstein-Uhlenbeck processes, random
walks, Matern fields based on stochastic partial differential equations,
separable and non-separable space-time models, graph-based Matern models,
bivariate type-G fields, and user-defined sparse operators. Latent fields
and observation models can use Gaussian and non-Gaussian noise
distributions, including normal inverse Gaussian, generalized asymmetric
Laplace, and skew-t distributions. Functions are included for simulation,
likelihood-based estimation, prediction, cross-validation, convergence
diagnostics, stochastic gradient optimization, batch-means confidence
intervals, and posterior-like sampling. The modeling framework is described
in Bolin, Jin, Simas and Wallin (2026) "A Unified and Computationally
Efficient Non-Gaussian Statistical Modeling Framework"
<doi:10.48550/arXiv.2602.23987 [...truncated...]
Author: David Bolin [aut, cph],
Xiaotian Jin [aut, cre],
Alexandre Simas [aut],
Jonas Wallin [aut],
Andrea V. Rocha [ctb] ,
Timothy A. Davis [ctb, cph] ,
Patrick R. Amestoy [ctb, cph] ,
Iain S. Duff [ctb, cph] ,
John K. Reid [ctb, cph] ,
Yanqing Chen [ctb, c [...truncated...]
Maintainer: Xiaotian Jin <xiaotian.jin@kaust.edu.sa>
Diff between ngme2 versions 0.9.8 dated 2026-05-20 and 1.0.0 dated 2026-09-27
ngme2-0.9.8/ngme2/inst/COPYRIGHTS |only ngme2-0.9.8/ngme2/tests/demo/demo_hessian_thetaK.R |only ngme2-0.9.8/ngme2/tests/demo/matern-script-2.R |only ngme2-0.9.8/ngme2/tests/demo/matern-script.R |only ngme2-0.9.8/ngme2/tests/testthat/test-core-noise-moments.R |only ngme2-0.9.8/ngme2/tests/testthat/test-predict-normal-nig.R |only ngme2-1.0.0/ngme2/DESCRIPTION | 16 ngme2-1.0.0/ngme2/MD5 | 429 +- ngme2-1.0.0/ngme2/NAMESPACE | 91 ngme2-1.0.0/ngme2/NEWS.md | 229 + ngme2-1.0.0/ngme2/R/RcppExports.R | 24 ngme2-1.0.0/ngme2/R/batch-means.R | 19 ngme2-1.0.0/ngme2/R/complex-models.R | 40 ngme2-1.0.0/ngme2/R/control.R | 681 +++ ngme2-1.0.0/ngme2/R/distributions.R | 18 ngme2-1.0.0/ngme2/R/f.R | 66 ngme2-1.0.0/ngme2/R/generic.R | 16 ngme2-1.0.0/ngme2/R/generic_ns.R | 4 ngme2-1.0.0/ngme2/R/group-cv-score.R |only ngme2-1.0.0/ngme2/R/group-cv.R |only ngme2-1.0.0/ngme2/R/models.R | 89 ngme2-1.0.0/ngme2/R/ngme.R | 323 + ngme2-1.0.0/ngme2/R/ngme_replicate.R | 17 ngme2-1.0.0/ngme2/R/noise.R | 10 ngme2-1.0.0/ngme2/R/operator.R | 2 ngme2-1.0.0/ngme2/R/optimizer.R | 6 ngme2-1.0.0/ngme2/R/plot.ngme.R | 41 ngme2-1.0.0/ngme2/R/predict.R | 49 ngme2-1.0.0/ngme2/R/prior.R | 51 ngme2-1.0.0/ngme2/R/simulation.R | 41 ngme2-1.0.0/ngme2/R/test.ngme.R | 5 ngme2-1.0.0/ngme2/R/util.R | 207 - ngme2-1.0.0/ngme2/R/validation.R | 167 ngme2-1.0.0/ngme2/README.md | 3 ngme2-1.0.0/ngme2/build/partial.rdb |binary ngme2-1.0.0/ngme2/build/vignette.rds |binary ngme2-1.0.0/ngme2/inst/include/Eigen |only ngme2-1.0.0/ngme2/man/compute_ngme_ci.Rd | 8 ngme2-1.0.0/ngme2/man/compute_ngme_sgld_samples.Rd | 6 ngme2-1.0.0/ngme2/man/compute_score_given_pred.Rd | 8 ngme2-1.0.0/ngme2/man/control_ngme.Rd | 16 ngme2-1.0.0/ngme2/man/control_opt.Rd | 481 ++ ngme2-1.0.0/ngme2/man/control_opt_batch_ci.Rd | 5 ngme2-1.0.0/ngme2/man/cross_validation.Rd | 14 ngme2-1.0.0/ngme2/man/f.Rd | 10 ngme2-1.0.0/ngme2/man/generic.Rd | 7 ngme2-1.0.0/ngme2/man/generic_ns.Rd | 4 ngme2-1.0.0/ngme2/man/gig.Rd | 6 ngme2-1.0.0/ngme2/man/group_cv.Rd |only ngme2-1.0.0/ngme2/man/ig.Rd | 6 ngme2-1.0.0/ngme2/man/name2fun.Rd | 3 ngme2-1.0.0/ngme2/man/ngme.Rd | 3 ngme2-1.0.0/ngme2/man/ngme2.Rd | 1 ngme2-1.0.0/ngme2/man/ngme_noise.Rd | 10 ngme2-1.0.0/ngme2/man/ngme_update.Rd | 8 ngme2-1.0.0/ngme2/man/nig.Rd | 6 ngme2-1.0.0/ngme2/man/precision_matrix_multivariate_spde.Rd | 52 ngme2-1.0.0/ngme2/man/predict.ngme.Rd | 10 ngme2-1.0.0/ngme2/man/prior_pc_nu.Rd |only ngme2-1.0.0/ngme2/man/simulate.ngme.Rd | 10 ngme2-1.0.0/ngme2/man/simulate.ngme_model.Rd | 4 ngme2-1.0.0/ngme2/man/simulate.ngme_noise.Rd | 4 ngme2-1.0.0/ngme2/man/spacetime.Rd | 10 ngme2-1.0.0/ngme2/man/stepsize_decay.Rd | 2 ngme2-1.0.0/ngme2/man/test_ngme.Rd | 5 ngme2-1.0.0/ngme2/src/Makevars | 143 ngme2-1.0.0/ngme2/src/RcppExports.cpp | 94 ngme2-1.0.0/ngme2/src/SuiteSparse/AMD/Makefile | 2 ngme2-1.0.0/ngme2/src/SuiteSparse/CAMD/Makefile | 2 ngme2-1.0.0/ngme2/src/SuiteSparse/CAMD/Source/camd_2.c | 2 ngme2-1.0.0/ngme2/src/SuiteSparse/CHOLMOD/Cholesky/cholmod_solve-faf9ff52.o.tmp |only ngme2-1.0.0/ngme2/src/SuiteSparse/CHOLMOD/Makefile | 4 ngme2-1.0.0/ngme2/src/SuiteSparse/CHOLMOD/Utility/t_cholmod_error.c | 38 ngme2-1.0.0/ngme2/src/block.cpp | 1750 ++++++++- ngme2-1.0.0/ngme2/src/block.h | 346 + ngme2-1.0.0/ngme2/src/estimate.cpp | 1796 +++++++++- ngme2-1.0.0/ngme2/src/group_cv.cpp |only ngme2-1.0.0/ngme2/src/include/ata_cache.h |only ngme2-1.0.0/ngme2/src/include/factor_counters.h |only ngme2-1.0.0/ngme2/src/include/nig_std.h |only ngme2-1.0.0/ngme2/src/include/phase_timing.h |only ngme2-1.0.0/ngme2/src/include/probing.h |only ngme2-1.0.0/ngme2/src/include/solver.h | 609 +++ ngme2-1.0.0/ngme2/src/include/thread_io.h |only ngme2-1.0.0/ngme2/src/include/transform_utils.h | 47 ngme2-1.0.0/ngme2/src/latent.cpp | 339 + ngme2-1.0.0/ngme2/src/latent.h | 79 ngme2-1.0.0/ngme2/src/latents/fractional/fractional_operators.cpp | 1 ngme2-1.0.0/ngme2/src/latents/generic.cpp | 110 ngme2-1.0.0/ngme2/src/latents/matern.cpp | 186 + ngme2-1.0.0/ngme2/src/latents/tensorprod.cpp | 1703 +++++++++ ngme2-1.0.0/ngme2/src/model.h | 2 ngme2-1.0.0/ngme2/src/ngme.cpp | 52 ngme2-1.0.0/ngme2/src/ngme.h | 37 ngme2-1.0.0/ngme2/src/noise.cpp | 33 ngme2-1.0.0/ngme2/src/operator.cpp | 516 ++ ngme2-1.0.0/ngme2/src/operator.h | 271 + ngme2-1.0.0/ngme2/src/optimizer.cpp | 108 ngme2-1.0.0/ngme2/src/optimizer.h | 19 ngme2-1.0.0/ngme2/src/util/MatrixAlgebra.cpp | 26 ngme2-1.0.0/ngme2/src/util/probing.cpp |only ngme2-1.0.0/ngme2/src/util/solver.cpp | 589 ++- ngme2-1.0.0/ngme2/tests/demo/fractional-inlabru-comparison.R |only ngme2-1.0.0/ngme2/tests/testthat/Rplots.pdf |binary ngme2-1.0.0/ngme2/tests/testthat/cpp |only ngme2-1.0.0/ngme2/tests/testthat/helper-cpp.R |only ngme2-1.0.0/ngme2/tests/testthat/helper-digest.R |only ngme2-1.0.0/ngme2/tests/testthat/test-api-control-opt-batch-ci.R | 5 ngme2-1.0.0/ngme2/tests/testthat/test-api-group-cv.R |only ngme2-1.0.0/ngme2/tests/testthat/test-api-nonsym-solver.R |only ngme2-1.0.0/ngme2/tests/testthat/test-api-par-names.R | 5 ngme2-1.0.0/ngme2/tests/testthat/test-api-prior.R | 49 ngme2-1.0.0/ngme2/tests/testthat/test-api-stationarity-dir-scale.R |only ngme2-1.0.0/ngme2/tests/testthat/test-api-thread-cap.R |only ngme2-1.0.0/ngme2/tests/testthat/test-compose-bv.R | 8 ngme2-1.0.0/ngme2/tests/testthat/test-compose-sum-ar1-matern.R | 5 ngme2-1.0.0/ngme2/tests/testthat/test-compose-tp-bv-matern.R | 2 ngme2-1.0.0/ngme2/tests/testthat/test-core-ar1-stationary.R |only ngme2-1.0.0/ngme2/tests/testthat/test-core-arma-identifiability.R |only ngme2-1.0.0/ngme2/tests/testthat/test-core-feff-precond.R |only ngme2-1.0.0/ngme2/tests/testthat/test-core-fractional-model.R | 167 ngme2-1.0.0/ngme2/tests/testthat/test-core-fractional-operator.R |only ngme2-1.0.0/ngme2/tests/testthat/test-core-fractional-sparsity.R |only ngme2-1.0.0/ngme2/tests/testthat/test-core-generic-ns.R | 161 ngme2-1.0.0/ngme2/tests/testthat/test-core-generic.R | 28 ngme2-1.0.0/ngme2/tests/testthat/test-core-kronecker-traces.R |only ngme2-1.0.0/ngme2/tests/testthat/test-core-noise.R | 51 ngme2-1.0.0/ngme2/tests/testthat/test-core-rng-reproducibility.R |only ngme2-1.0.0/ngme2/tests/testthat/test-core-trace-probing.R |only ngme2-1.0.0/ngme2/tests/testthat/test-fit-arma.R |only ngme2-1.0.0/ngme2/tests/testthat/test-fit-batch-means-ci.R |only ngme2-1.0.0/ngme2/tests/testthat/test-fit-compute-ngme-ci.R |only ngme2-1.0.0/ngme2/tests/testthat/test-fit-compute-ngme-sgld-samples.R |only ngme2-1.0.0/ngme2/tests/testthat/test-fit-matern-cv.R |only ngme2-1.0.0/ngme2/tests/testthat/test-fit-optimizers.R |only ngme2-1.0.0/ngme2/tests/testthat/test-fit-sgld-optimizer.R |only ngme2-1.0.0/ngme2/tests/testthat/test-fit-sgld-samples.R |only ngme2-1.0.0/ngme2/tests/testthat/test-fit-stepsize-schedule.R |only ngme2-1.0.0/ngme2/tests/testthat/test-predict-chain-average.R | 3 ngme2-1.0.0/ngme2/tests/testthat/test-predict-response-samples.R | 2 ngme2-1.0.0/ngme2/tests/testthat/test-regression-bv-c-param.R | 4 ngme2-1.0.0/ngme2/tests/testthat/test-regression-factor-cache.R |only ngme2-1.0.0/ngme2/tests/testthat/test-regression-factored-trace.R |only ngme2-1.0.0/ngme2/tests/testthat/test-regression-fixed-sigma-index.R |only ngme2-1.0.0/ngme2/tests/testthat/test-regression-matern-free-boundary.R |only ngme2-1.0.0/ngme2/tests/testthat/test-regression-mesh-per-replicate.R |only ngme2-1.0.0/ngme2/tests/testthat/test-regression-nonfinite-step.R |only ngme2-1.0.0/ngme2/tests/testthat/test-regression-robust.R | 1 ngme2-1.0.0/ngme2/tests/testthat/test-regression-traj-fixed-params.R |only ngme2-1.0.0/ngme2/tests/testthat/test-spacetime-stationary-init.R |only 150 files changed, 11390 insertions(+), 1348 deletions(-)
Title: Factor Modeling for Radiomics Data
Description: Functions that support stable prediction and classification with radiomics data through factor-analytic modeling. For details, see Peeters et al. (2019) <doi:10.48550/arXiv.1903.11696>.
Author: Carel F.W. Peeters [cre, aut],
Caroline Ubelhor [ctb],
Kevin Kunzmann [ctb]
Maintainer: Carel F.W. Peeters <carel.peeters@wur.nl>
Diff between FMradio versions 1.1.2 dated 2025-08-29 and 1.1.3 dated 2026-09-27
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- README.md | 4 ++-- inst/NEWS.Rd | 8 ++++++++ man/dimLRT.Rd | 4 ++-- man/radioHeat.Rd | 2 +- 6 files changed, 21 insertions(+), 13 deletions(-)
Title: Differential Identification using Mixture Ensemble
Description: A robust identification of differential binding sites method for analyzing ChIP-seq (Chromatin Immunoprecipitation Sequencing)
comparing two samples that considers an ensemble of finite mixture models combined with a local false discovery rate (fdr)
allowing for flexible modeling of data. Methods for Differential Identification using Mixture Ensemble (DIME) is described in:
Taslim et al., (2011) <doi:10.1093/bioinformatics/btr165>.
Author: Cenny Taslim [aut, cre],
Dustin Potter [ctb],
Abbasali Khalili [ctb],
Shili Lin [ctb]
Maintainer: Cenny Taslim <cenny.taslim@nationwidechildrens.org>
Diff between DIME versions 1.3.0 dated 2022-05-10 and 1.3.1 dated 2026-09-27
DESCRIPTION | 23 +++++++++++++++++------ MD5 | 4 ++-- man/DIME.Rd | 2 +- 3 files changed, 20 insertions(+), 9 deletions(-)
Title: Translate CSS Selectors to XPath Expressions
Description: Translates a CSS selector into an equivalent XPath
expression. This allows us to use CSS selectors when working with
the 'XML' and 'xml2' packages, which can only evaluate XPath
expressions. Also provided are convenience functions for querying
XML and HTML documents with CSS selectors. This package was
originally a port of the Python package 'cssselect'
(<https://cssselect.readthedocs.io/>).
Author: Simon Potter [aut, trl, cre],
Simon Sapin [aut],
Ian Bicking [aut]
Maintainer: Simon Potter <simon@sjp.co.nz>
Diff between selectr versions 0.7-0 dated 2026-09-17 and 0.8-0 dated 2026-09-27
DESCRIPTION | 7 MD5 | 45 NAMESPACE | 27 R/class.R |only R/main.R | 52 - R/ncname.R | 9 R/parser.R | 1354 +++++++++++++----------------- R/xpath.R | 606 +++++++------ inst/NEWS.Rd | 66 + man/selectors.Rd | 8 tests/testthat/test-adjacent-sibling.R | 4 tests/testthat/test-error-hierarchy.R | 2 tests/testthat/test-namespaces.R | 22 tests/testthat/test-nth-child-of.R | 68 + tests/testthat/test-nth-child.R | 28 tests/testthat/test-parser.R | 24 tests/testthat/test-pseudo.R | 14 tests/testthat/test-scope.R | 2 tests/testthat/test-selectors-reference.R | 14 tests/testthat/test-series.R | 17 tests/testthat/test-specificity.R | 2 tests/testthat/test-tokenizer.R | 72 + tests/testthat/test-translation.R | 68 - tests/testthat/test-xpath.R | 14 24 files changed, 1356 insertions(+), 1169 deletions(-)
Title: Result Stability Checks for Empirical R Projects
Description: Lightweight helpers for checking whether empirical results remain
substantively unchanged across code revisions, platform differences,
and package updates. The package supports regression-style testing of
derived datasets, statistical model outputs, tables, and plots, helping
researchers detect unintended result drift early and distinguish material
from non-material changes in empirical workflows.
Author: Dianyi Yang [aut, cre, ctb]
Maintainer: Dianyi Yang <dianyi.yang@politics.ox.ac.uk>
Diff between resultcheck versions 0.3.1 dated 2026-09-14 and 0.3.2 dated 2026-09-27
DESCRIPTION | 6 ++--- MD5 | 8 +++---- NEWS.md | 6 +++++ inst/extdata/snapshot-method-defaults.R | 36 ++++++++++++++++---------------- tests/testthat/test-snapshot.R | 36 ++++++++++++++++++++++++++++++++ 5 files changed, 68 insertions(+), 24 deletions(-)
Title: Thin Wrapper for Mapping Library 'AMap'('Gaode')
Description: Build and control interactive 2D and 3D maps with 'R/Shiny'. Lean set of powerful commands wrapping native calls to 'AMap' <https://lbs.amap.com/api/jsapi-v2/summary/>.
Deliver rich mapping functionality with minimal overhead.
Author: Larry Helgason [aut, cre, cph]
Maintainer: Larry Helgason <larry@helgasoft.com>
Diff between amapro versions 0.1.4 dated 2026-01-27 and 0.1.5 dated 2026-09-27
DESCRIPTION | 10 MD5 | 31 - NEWS.md | 7 R/amapro.R | 2 README.md | 21 build/vignette.rds |binary demo/am.shiny.R | 4 inst/doc/info.R | 25 inst/doc/info.Rmd | 43 + inst/doc/info.html | 34 - inst/figures/arrondissements.geojson |only inst/htmlwidgets/amapro.js | 900 +++++++++++++++++------------------ inst/htmlwidgets/amapro.yaml | 2 inst/js/amap.js | 6 man/Introduction.Rd | 27 - tests/testthat/test-loca.R | 16 vignettes/info.Rmd | 43 + 17 files changed, 618 insertions(+), 553 deletions(-)