Title: Topological Data Analysis: Mapper Algorithm
Description: The Mapper algorithm from Topological Data Analysis, the steps are as follows 1. Define a filter (lens) function on the data. 2. Perform clustering within each level set. 3. Generate a complex from the clustering results.
Author: ChiChien Wang [aut, cre, trl]
Maintainer: ChiChien Wang <kennywang2003@gmail.com>
Diff between MapperAlgo versions 1.2.0 dated 2026-08-31 and 1.3.0 dated 2026-09-29
MapperAlgo-1.2.0/MapperAlgo/R/SimplicialComplex.R |only MapperAlgo-1.2.0/MapperAlgo/inst/example/TestingFMapper.R |only MapperAlgo-1.2.0/MapperAlgo/inst/example/TestingGMapper.R |only MapperAlgo-1.2.0/MapperAlgo/inst/example/TestingMapper.R |only MapperAlgo-1.2.0/MapperAlgo/man/simplcial_complex.Rd |only MapperAlgo-1.3.0/MapperAlgo/DESCRIPTION | 19 - MapperAlgo-1.3.0/MapperAlgo/MD5 | 30 +- MapperAlgo-1.3.0/MapperAlgo/NAMESPACE | 2 MapperAlgo-1.3.0/MapperAlgo/R/ConvertLevelsets.R | 23 -- MapperAlgo-1.3.0/MapperAlgo/R/FMapper.R | 143 +++---------- MapperAlgo-1.3.0/MapperAlgo/R/GMapper.R | 125 ++---------- MapperAlgo-1.3.0/MapperAlgo/R/MapperAlgo.R | 145 ++------------ MapperAlgo-1.3.0/MapperAlgo/R/MapperUtils.R |only MapperAlgo-1.3.0/MapperAlgo/README.md | 8 MapperAlgo-1.3.0/MapperAlgo/inst/example/TestFMapper.R |only MapperAlgo-1.3.0/MapperAlgo/inst/example/TestGMapper.R |only MapperAlgo-1.3.0/MapperAlgo/inst/example/TestMapper.R |only MapperAlgo-1.3.0/MapperAlgo/man/FuzzyMapperAlgo.Rd | 13 + MapperAlgo-1.3.0/MapperAlgo/man/GMapperAlgo.Rd | 7 MapperAlgo-1.3.0/MapperAlgo/man/MapperAlgo.Rd | 6 MapperAlgo-1.3.0/MapperAlgo/man/mapper_adjacency.Rd |only 21 files changed, 144 insertions(+), 377 deletions(-)
Title: Access the Open Data API of the Legislative Assembly of
Pernambuco
Description: A tidy interface to the open data API of the Legislative
Assembly of the State of Pernambuco, Brazil ('ALEPE',
<https://dadosabertos.alepe.pe.gov.br>). Retrieve data on
representatives, staff, positions, departments, remuneration,
contracts, procurement processes, and legislative propositions as
tibbles with clean names and parsed column types. Requests are cached
locally and retried with exponential backoff; network failures are
handled gracefully.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Julia Nascimento Barreto [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between alepe versions 0.1.0 dated 2026-08-20 and 0.1.1 dated 2026-09-29
DESCRIPTION | 23 +++++++++++++---------- MD5 | 24 ++++++++++++------------ NEWS.md | 15 +++++++++++++++ R/aliases.R | 3 +++ R/people.R | 35 +++++++++++++++++++++-------------- R/utils.R | 12 ++++++++++-- README.md | 5 +++-- man/alepe-package.Rd | 8 ++++---- man/alepe_aliases.Rd | 7 +++---- man/alepe_positions.Rd | 3 ++- man/alepe_staff.Rd | 10 +++++++--- tests/testthat/test-endpoints.R | 24 ++++++++++++++++++++++++ tests/testthat/test-utils.R | 3 +++ 13 files changed, 120 insertions(+), 52 deletions(-)
Title: Flexible, Interactive 'shiny' Modules for Almost Any Plot
Description: Offers a core selection of interactivity-first 'shiny' modules for many
plot types meant to serve as flexible building blocks for applications and
as the base for more complex modules. These modules
allow for the rapid and convenient construction of 'shiny' apps with very few lines
of code and decouple plotting from the underlying data. These modules allow
for full plot aesthetic customization by the end user through UI inputs. Utility
functions for simple UI organization, automated UI tooltips, and additional
plot enhancements are also provided. Includes a multi-panel figure builder app
for arranging multiple modules together in a free-form layout.
Author: Jared Andrews [aut, cre] ,
Jacob Martin [aut]
Maintainer: Jared Andrews <jared.andrews07@gmail.com>
Diff between VizModules versions 0.4.0 dated 2026-08-28 and 0.5.0 dated 2026-09-29
VizModules-0.4.0/VizModules/R/plotthis_ViolinPlot_module_app.R |only VizModules-0.4.0/VizModules/R/plotthis_ViolinPlot_module_server.R |only VizModules-0.4.0/VizModules/R/plotthis_ViolinPlot_module_ui.R |only VizModules-0.4.0/VizModules/inst/apps/figure-builder |only VizModules-0.4.0/VizModules/man/INTERNAL_fix_boxplot_facet_positions.Rd |only VizModules-0.4.0/VizModules/man/figures/DumbellPlot.png |only VizModules-0.4.0/VizModules/man/figures/UI_Overview.png |only VizModules-0.4.0/VizModules/man/figures/ViolinPlot.png |only VizModules-0.4.0/VizModules/man/plotthis_ViolinPlotApp.Rd |only VizModules-0.4.0/VizModules/man/plotthis_ViolinPlotInputsUI.Rd |only VizModules-0.4.0/VizModules/man/plotthis_ViolinPlotOutputUI.Rd |only VizModules-0.4.0/VizModules/man/plotthis_ViolinPlotServer.Rd |only VizModules-0.5.0/VizModules/DESCRIPTION | 8 VizModules-0.5.0/VizModules/MD5 | 616 ++- VizModules-0.5.0/VizModules/NAMESPACE | 21 VizModules-0.5.0/VizModules/NEWS.md | 196 + VizModules-0.5.0/VizModules/R/ComplexHeatmap_Heatmap_helpers.R | 955 +++--- VizModules-0.5.0/VizModules/R/ComplexHeatmap_Heatmap_module_app.R | 127 VizModules-0.5.0/VizModules/R/ComplexHeatmap_Heatmap_module_server.R | 382 +- VizModules-0.5.0/VizModules/R/ComplexHeatmap_Heatmap_module_ui.R | 575 +++ VizModules-0.5.0/VizModules/R/createModuleApp.R | 108 VizModules-0.5.0/VizModules/R/data.R | 103 VizModules-0.5.0/VizModules/R/dataFilter_module_server.R | 12 VizModules-0.5.0/VizModules/R/dittoViz_ScatterPlot_module_app.R | 17 VizModules-0.5.0/VizModules/R/dittoViz_ScatterPlot_module_server.R | 138 VizModules-0.5.0/VizModules/R/dittoViz_ScatterPlot_module_ui.R | 39 VizModules-0.5.0/VizModules/R/dittoViz_freqPlot_module_app.R | 31 VizModules-0.5.0/VizModules/R/dittoViz_freqPlot_module_server.R | 140 VizModules-0.5.0/VizModules/R/dittoViz_freqPlot_module_ui.R | 21 VizModules-0.5.0/VizModules/R/dittoViz_yPlot_module_app.R | 17 VizModules-0.5.0/VizModules/R/dittoViz_yPlot_module_server.R | 355 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VizModules-0.5.0/VizModules/R/parallelCoordinatesPlot.R | 4 VizModules-0.5.0/VizModules/R/parallelCoordinatesPlot_module_app.R | 19 VizModules-0.5.0/VizModules/R/parallelCoordinatesPlot_module_server.R | 8 VizModules-0.5.0/VizModules/R/parallelCoordinatesPlot_module_ui.R | 9 VizModules-0.5.0/VizModules/R/parse_utils.R | 396 ++ VizModules-0.5.0/VizModules/R/piePlot_module_app.R | 25 VizModules-0.5.0/VizModules/R/piePlot_module_server.R | 4 VizModules-0.5.0/VizModules/R/piePlot_module_ui.R | 8 VizModules-0.5.0/VizModules/R/plot_axis.R | 102 VizModules-0.5.0/VizModules/R/plot_boxplot.R | 174 - VizModules-0.5.0/VizModules/R/plot_facets.R | 171 - VizModules-0.5.0/VizModules/R/plot_fit_lines.R | 349 +- VizModules-0.5.0/VizModules/R/plot_helpers.R | 335 +- VizModules-0.5.0/VizModules/R/plot_legend.R | 183 - VizModules-0.5.0/VizModules/R/plot_source_data.R | 611 +++ VizModules-0.5.0/VizModules/R/plotly_annotation_utils.R | 28 VizModules-0.5.0/VizModules/R/plotthis_AreaPlot_module_app.R | 17 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17 VizModules-0.5.0/VizModules/R/plotthis_Histogram_module_server.R | 28 VizModules-0.5.0/VizModules/R/plotthis_Histogram_module_ui.R | 8 VizModules-0.5.0/VizModules/R/plotthis_SplitBarPlot_module_app.R | 17 VizModules-0.5.0/VizModules/R/plotthis_SplitBarPlot_module_server.R | 135 VizModules-0.5.0/VizModules/R/plotthis_SplitBarPlot_module_ui.R | 33 VizModules-0.5.0/VizModules/R/radarPlot_module_app.R | 17 VizModules-0.5.0/VizModules/R/radarPlot_module_server.R | 4 VizModules-0.5.0/VizModules/R/radarPlot_module_ui.R | 8 VizModules-0.5.0/VizModules/R/reset_uniform_ui_inputs.R | 36 VizModules-0.5.0/VizModules/R/stat_helper.R | 403 ++ VizModules-0.5.0/VizModules/R/ui_utils.R | 116 VizModules-0.5.0/VizModules/R/uniform_ui_inputs.R | 123 VizModules-0.5.0/VizModules/README.md | 101 VizModules-0.5.0/VizModules/data/example_bar.rda |binary VizModules-0.5.0/VizModules/data/example_composition.rda |binary VizModules-0.5.0/VizModules/data/example_demographics.rda |binary 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VizModules-0.5.0/VizModules/man/INTERNAL_split_bar_range.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_stage_source_images.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_stat_bracket_headroom.Rd | 6 VizModules-0.5.0/VizModules/man/INTERNAL_strip_svg_prolog.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_subplot_spacing_defaults.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_svg_namespace_ids.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_svg_set_px_size.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_svg_standalone.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_toggle_facet_title_inputs.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_uniform_stats_inputs_ui.Rd | 2 VizModules-0.5.0/VizModules/man/INTERNAL_validate_expression_with.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_viz_modules_dependency.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_write_source_images.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_write_source_zip.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_yplot_default_hover.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_yplot_free_y.Rd |only VizModules-0.5.0/VizModules/man/INTERNAL_yplot_stat_context.Rd |only VizModules-0.5.0/VizModules/man/add_plot_config.Rd | 7 VizModules-0.5.0/VizModules/man/adjust_column_values.Rd | 35 VizModules-0.5.0/VizModules/man/adjusted_axis_label.Rd | 6 VizModules-0.5.0/VizModules/man/apply_legend_inputs.Rd |only VizModules-0.5.0/VizModules/man/apply_legend_styling.Rd | 53 VizModules-0.5.0/VizModules/man/apply_stat_annotations.Rd | 13 VizModules-0.5.0/VizModules/man/apply_subplot_axis_styling.Rd | 8 VizModules-0.5.0/VizModules/man/build_facet_annotations.Rd | 12 VizModules-0.5.0/VizModules/man/collect_source_data.Rd | 13 VizModules-0.5.0/VizModules/man/createModuleApp.Rd | 20 VizModules-0.5.0/VizModules/man/create_source_download_handler.Rd | 66 VizModules-0.5.0/VizModules/man/create_stat_annotations.Rd | 31 VizModules-0.5.0/VizModules/man/dittoViz_freqPlotApp.Rd | 22 VizModules-0.5.0/VizModules/man/dittoViz_freqPlotInputsUI.Rd | 21 VizModules-0.5.0/VizModules/man/dittoViz_scatterPlotApp.Rd | 13 VizModules-0.5.0/VizModules/man/dittoViz_scatterPlotInputsUI.Rd | 23 VizModules-0.5.0/VizModules/man/dittoViz_yPlotApp.Rd | 13 VizModules-0.5.0/VizModules/man/dittoViz_yPlotInputsUI.Rd | 39 VizModules-0.5.0/VizModules/man/draw_to_png.Rd |only VizModules-0.5.0/VizModules/man/draw_to_svg.Rd |only VizModules-0.5.0/VizModules/man/dumbbellPlot.Rd | 36 VizModules-0.5.0/VizModules/man/dumbbellPlotApp.Rd | 15 VizModules-0.5.0/VizModules/man/dumbbellPlotInputsUI.Rd | 6 VizModules-0.5.0/VizModules/man/example_bar.Rd | 13 VizModules-0.5.0/VizModules/man/example_demographics.Rd | 27 VizModules-0.5.0/VizModules/man/example_heatmap_column_data.Rd | 64 VizModules-0.5.0/VizModules/man/example_heatmap_matrix.Rd | 84 VizModules-0.5.0/VizModules/man/example_mtcars.Rd | 7 VizModules-0.5.0/VizModules/man/example_population.Rd | 12 VizModules-0.5.0/VizModules/man/example_rnaseq.Rd | 4 VizModules-0.5.0/VizModules/man/example_sales.Rd | 24 VizModules-0.5.0/VizModules/man/example_skills.Rd | 9 VizModules-0.5.0/VizModules/man/figureBuilderApp.Rd | 27 VizModules-0.5.0/VizModules/man/figureBuilderServer.Rd | 33 VizModules-0.5.0/VizModules/man/figureBuilderUI.Rd | 5 VizModules-0.5.0/VizModules/man/figures/AreaPlot.png |binary VizModules-0.5.0/VizModules/man/figures/BarPlot.png |only VizModules-0.5.0/VizModules/man/figures/BoxPlot.png |binary VizModules-0.5.0/VizModules/man/figures/DensityPlot.png |binary VizModules-0.5.0/VizModules/man/figures/DotPlot.png |binary VizModules-0.5.0/VizModules/man/figures/DumbbellPlot.png |only VizModules-0.5.0/VizModules/man/figures/Figure_builder.png |binary VizModules-0.5.0/VizModules/man/figures/FreqPlot.png |only VizModules-0.5.0/VizModules/man/figures/Heatmap.png |only VizModules-0.5.0/VizModules/man/figures/HistogramPlot.png |binary 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VizModules-0.5.0/VizModules/man/parallelCoordinatesPlotApp.Rd | 15 VizModules-0.5.0/VizModules/man/piePlotApp.Rd | 19 VizModules-0.5.0/VizModules/man/plotthis_AreaPlotApp.Rd | 13 VizModules-0.5.0/VizModules/man/plotthis_AreaPlotInputsUI.Rd | 8 VizModules-0.5.0/VizModules/man/plotthis_BarPlotApp.Rd | 13 VizModules-0.5.0/VizModules/man/plotthis_BarPlotInputsUI.Rd | 25 VizModules-0.5.0/VizModules/man/plotthis_BoxPlotApp.Rd | 13 VizModules-0.5.0/VizModules/man/plotthis_BoxPlotInputsUI.Rd | 16 VizModules-0.5.0/VizModules/man/plotthis_DensityPlotApp.Rd | 13 VizModules-0.5.0/VizModules/man/plotthis_DensityPlotInputsUI.Rd | 5 VizModules-0.5.0/VizModules/man/plotthis_DotPlotApp.Rd | 13 VizModules-0.5.0/VizModules/man/plotthis_DotPlotInputsUI.Rd | 5 VizModules-0.5.0/VizModules/man/plotthis_HistogramApp.Rd | 13 VizModules-0.5.0/VizModules/man/plotthis_HistogramInputsUI.Rd | 5 VizModules-0.5.0/VizModules/man/plotthis_SplitBarPlotApp.Rd | 13 VizModules-0.5.0/VizModules/man/plotthis_SplitBarPlotInputsUI.Rd | 16 VizModules-0.5.0/VizModules/man/radarPlotApp.Rd | 13 VizModules-0.5.0/VizModules/man/reset_axis_title_text.Rd | 84 VizModules-0.5.0/VizModules/man/reset_legend_inputs.Rd | 5 VizModules-0.5.0/VizModules/man/resolve_column_targets.Rd | 112 VizModules-0.5.0/VizModules/man/show_input.Rd | 68 VizModules-0.5.0/VizModules/man/stat_bracket_y_max.Rd | 15 VizModules-0.5.0/VizModules/man/toggle_input_cell.Rd | 72 VizModules-0.5.0/VizModules/man/uniform_legend_inputs_ui.Rd | 22 VizModules-0.5.0/VizModules/man/uniform_plotly_inputs_ui.Rd | 7 VizModules-0.5.0/VizModules/tests/testthat/helper-overlays.R |only VizModules-0.5.0/VizModules/tests/testthat/test-adjustments.R |only VizModules-0.5.0/VizModules/tests/testthat/test-boxPlot.R |only VizModules-0.5.0/VizModules/tests/testthat/test-dataFilter.R | 293 - VizModules-0.5.0/VizModules/tests/testthat/test-dumbbellPlot.R | 312 + VizModules-0.5.0/VizModules/tests/testthat/test-expression-safety.R | 480 +-- VizModules-0.5.0/VizModules/tests/testthat/test-figureBuilder.R | 277 + VizModules-0.5.0/VizModules/tests/testthat/test-figure_export.R |only VizModules-0.5.0/VizModules/tests/testthat/test-freqPlot.R | 288 - VizModules-0.5.0/VizModules/tests/testthat/test-group_colors.R | 151 VizModules-0.5.0/VizModules/tests/testthat/test-heatmap.R | 1414 +++++++- VizModules-0.5.0/VizModules/tests/testthat/test-linePlot.R | 876 +++-- VizModules-0.5.0/VizModules/tests/testthat/test-multiColorPicker.R | 19 VizModules-0.5.0/VizModules/tests/testthat/test-multiDynamicInput.R |only VizModules-0.5.0/VizModules/tests/testthat/test-parallelCoordinatesPlot.R | 163 - VizModules-0.5.0/VizModules/tests/testthat/test-piePlot.R | 101 VizModules-0.5.0/VizModules/tests/testthat/test-plot_fit_lines.R |only VizModules-0.5.0/VizModules/tests/testthat/test-plot_functions.R |only VizModules-0.5.0/VizModules/tests/testthat/test-plot_mods.R | 1574 +++++----- VizModules-0.5.0/VizModules/tests/testthat/test-plot_source_data.R | 457 ++ VizModules-0.5.0/VizModules/tests/testthat/test-radarPlot.R | 184 - VizModules-0.5.0/VizModules/tests/testthat/test-reactive_defaults.R | 36 VizModules-0.5.0/VizModules/tests/testthat/test-scatterPlot.R | 216 + VizModules-0.5.0/VizModules/tests/testthat/test-select_inputs.R | 71 VizModules-0.5.0/VizModules/tests/testthat/test-showcase.R |only VizModules-0.5.0/VizModules/tests/testthat/test-stat_helper.R | 459 +- VizModules-0.5.0/VizModules/tests/testthat/test-ui_utils.R | 389 ++ VizModules-0.5.0/VizModules/tests/testthat/test-yPlot.R | 454 +- VizModules-0.5.0/VizModules/vignettes/adding-a-new-module.Rmd | 240 + VizModules-0.5.0/VizModules/vignettes/custom-model-lines.Rmd | 16 VizModules-0.5.0/VizModules/vignettes/custom-modules.Rmd | 36 VizModules-0.5.0/VizModules/vignettes/custom-shiny-inputs.Rmd | 82 VizModules-0.5.0/VizModules/vignettes/data-filtering.Rmd | 30 VizModules-0.5.0/VizModules/vignettes/defaults-and-hiding.Rmd | 73 VizModules-0.5.0/VizModules/vignettes/quick-start.Rmd | 81 VizModules-0.5.0/VizModules/vignettes/statistical-testing.Rmd | 50 361 files changed, 15481 insertions(+), 7560 deletions(-)
Title: Create Common TLGs Used in Clinical Trials
Description: Table, Listings, and Graphs (TLG) library for common outputs
used in clinical trials.
Author: Joe Zhu [aut, cre] ,
Daniel Sabanes Bove [aut],
Jana Stoilova [aut],
Davide Garolini [aut] ,
Emily de la Rua [aut] ,
Abinaya Yogasekaram [aut] ,
Heng Wang [aut],
Francois Collin [aut],
Adrian Waddell [aut],
Pawel Rucki [aut],
Chendi Liao [aut],
Jenni [...truncated...]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between tern versions 0.9.11 dated 2026-07-17 and 0.9.12 dated 2026-09-29
DESCRIPTION | 16 MD5 | 653 +- NAMESPACE | 724 +- NEWS.md | 1916 +++---- R/abnormal.R | 496 - R/abnormal_by_baseline.R | 600 +- R/abnormal_by_marked.R | 608 +- R/abnormal_by_worst_grade.R | 606 +- R/abnormal_lab_worsen_by_baseline.R | 974 +-- R/analyze_variables.R | 1712 +++--- R/analyze_vars_in_cols.R | 774 +- R/argument_convention.R | 178 R/bland_altman.R | 312 - R/compare_variables.R | 486 - R/control_survival.R | 156 R/count_cumulative.R | 590 +- R/count_missed_doses.R | 462 - R/count_occurrences.R | 724 +- R/count_occurrences_by_grade.R | 994 +-- R/count_patients_events_in_cols.R | 348 - R/count_patients_with_event.R | 494 - R/count_patients_with_flags.R | 524 - R/count_values.R | 438 - R/cox_regression_inter.R | 716 +- R/coxph.R | 788 +- R/d_pkparam.R | 836 +-- R/decorate_grob.R | 1042 +-- R/desctools_binom_diff.R | 1392 ++--- R/df_explicit_na.R | 366 - R/estimate_multinomial_rsp.R | 474 - R/estimate_proportion.R | 1352 ++--- R/fit_rsp_step.R | 274 - R/fit_survival_step.R | 234 R/formatting_functions.R | 1212 ++-- R/g_forest.R | 2206 ++++---- R/g_ipp.R | 552 +- R/g_km.R | 1220 ++-- R/g_lineplot.R | 1254 ++-- R/g_waterfall.R | 264 R/h_adsl_adlb_merge_using_worst_flag.R | 290 - R/h_biomarkers_subgroups.R | 484 - R/h_incidence_rate.R | 278 - R/h_km.R | 2260 ++++---- R/h_logistic_regression.R | 1514 ++--- R/h_map_for_count_abnormal.R | 306 - R/h_pkparam_sort.R | 84 R/h_response_biomarkers_subgroups.R | 350 - R/h_response_subgroups.R | 790 +- R/h_stack_by_baskets.R | 318 - R/h_step.R | 624 +- R/h_survival_biomarkers_subgroups.R | 358 - R/h_survival_duration_subgroups.R | 968 +-- R/incidence_rate.R | 556 +- R/logistic_regression.R | 710 +- R/missing_data.R | 216 R/odds_ratio.R | 808 +-- R/package.R | 70 R/prop_diff.R | 2685 +++++----- R/prop_diff_test.R | 1154 ++-- R/prune_occurrences.R | 480 - R/response_biomarkers_subgroups.R | 638 +- R/response_subgroups.R | 1024 +-- R/riskdiff.R | 380 - R/rtables_access.R | 344 - R/score_occurrences.R | 258 R/split_cols_by_groups.R | 534 - R/stat.R | 462 - R/summarize_ancova.R | 768 +- R/summarize_change.R | 410 - R/summarize_colvars.R | 180 R/summarize_coxreg.R | 914 +-- R/summarize_glm_count.R | 1206 ++-- R/summarize_num_patients.R | 726 +- R/summarize_patients_exposure_in_cols.R | 784 +- R/survival_biomarkers_subgroups.R | 656 +- R/survival_coxph_pairwise.R | 630 +- R/survival_duration_subgroups.R | 1036 +-- R/survival_time.R | 576 +- R/survival_timepoint.R | 750 +- R/utils.R | 1022 ++- R/utils_checkmate.R | 445 - R/utils_default_stats_formats_labels.R | 1578 ++--- R/utils_ggplot.R | 441 - R/utils_grid.R | 574 +- R/utils_rtables.R | 1090 ++-- R/utils_split_funs.R | 310 - README.md | 168 build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 312 - inst/WORDLIST | 134 inst/doc/mantel_fleiss_criterion.R |only inst/doc/mantel_fleiss_criterion.Rmd |only inst/doc/mantel_fleiss_criterion.html |only inst/doc/missing_values.Rmd | 280 - inst/doc/missing_values.html | 589 +- inst/doc/tables.Rmd | 918 +-- inst/doc/tables.html | 1413 ++--- inst/doc/tern.Rmd | 344 - inst/doc/tern.html | 519 - inst/doc/tern_formats.Rmd | 556 +- inst/doc/tern_formats.html | 776 +- inst/doc/tern_functions_guide.Rmd | 286 - inst/doc/tern_functions_guide.html | 666 +- inst/doc/uncond_exact_prop_diff_ci.Rmd | 436 - inst/doc/uncond_exact_prop_diff_ci.html | 578 +- man/abnormal.Rd | 374 - man/abnormal_by_marked.Rd | 466 - man/abnormal_by_worst_grade.Rd | 348 - man/abnormal_lab_worsen_by_baseline.Rd | 360 - man/add_riskdiff.Rd | 112 man/add_rowcounts.Rd | 76 man/afun_riskdiff.Rd | 126 man/analyze_variables.Rd | 864 +-- man/analyze_vars_in_cols.Rd | 380 - man/append_varlabels.Rd | 102 man/assertions.Rd | 47 man/clogit_with_tryCatch.Rd | 74 man/combine_counts.Rd | 104 man/combine_groups.Rd | 74 man/compare_variables.Rd | 472 - man/control_annot.Rd | 148 man/control_coxph.Rd | 70 man/control_riskdiff.Rd | 94 man/count_missed_doses.Rd | 324 - man/count_occurrences_by_grade.Rd | 564 +- man/count_patients_events_in_cols.Rd | 256 man/count_patients_with_event.Rd | 426 - man/count_patients_with_flags.Rd | 416 - man/count_values.Rd | 324 - man/cox_regression.Rd | 570 +- man/d_proportion.Rd | 18 man/d_proportion_diff.Rd | 65 man/d_test_proportion_diff.Rd | 18 man/default_stats_formats_labels.Rd | 544 +- man/estimate_coef.Rd | 168 man/estimate_multinomial_rsp.Rd | 286 - man/estimate_proportion.Rd | 394 - man/extract_rsp_biomarkers.Rd | 208 man/extract_survival_subgroups.Rd | 120 man/extreme_format.Rd | 144 man/fit_logistic.Rd | 148 man/fit_rsp_step.Rd | 218 man/fit_survival_step.Rd | 186 man/format_auto.Rd | 122 man/format_count_fraction_fixed_dp.Rd | 88 man/format_count_fraction_lt10.Rd | 88 man/format_extreme_values.Rd | 88 man/format_extreme_values_ci.Rd | 88 man/format_fraction_fixed_dp.Rd | 90 man/format_fraction_threshold.Rd | 94 man/format_range_cens.Rd | 92 man/format_sigfig.Rd | 106 man/format_xx.Rd | 96 man/g_forest.Rd | 64 man/g_ipp.Rd | 204 man/g_km.Rd | 472 - man/g_lineplot.Rd | 482 - man/get_complete_cases.Rd |only man/groups_list_to_df.Rd | 54 man/h_adlb_abnormal_by_worst_grade.Rd | 126 man/h_adlb_worsen.Rd | 138 man/h_biomarkers_subgroups.Rd | 318 - man/h_cox_regression.Rd | 322 - man/h_data_plot.Rd | 104 man/h_decompose_gg.Rd | 116 man/h_find_ci_bound_uniroot.Rd | 70 man/h_g_ipp.Rd | 166 man/h_ggkm.Rd | 200 man/h_grob_coxph.Rd | 110 man/h_grob_median_surv.Rd | 106 man/h_grob_tbl_at_risk.Rd | 176 man/h_grob_y_annot.Rd | 98 man/h_incidence_rate.Rd | 160 man/h_km_layout.Rd | 142 man/h_logistic_regression.Rd | 438 - man/h_miettinen_nurminen_var_est.Rd | 72 man/h_pkparam_sort.Rd | 52 man/h_prepare_rsp_table.Rd |only man/h_prop_diff.Rd | 413 - man/h_prop_diff_test.Rd | 214 man/h_response_biomarkers_subgroups.Rd | 194 man/h_response_subgroups.Rd | 384 - man/h_stack_by_baskets.Rd | 162 man/h_survival_biomarkers_subgroups.Rd | 212 man/h_survival_duration_subgroups.Rd | 436 - man/h_tbl_coxph_pairwise.Rd | 128 man/h_tbl_median_surv.Rd | 74 man/h_worsen_counter.Rd | 144 man/h_worst_case_tail_probability.Rd | 80 man/h_xticks.Rd | 90 man/incidence_rate.Rd | 414 - man/labels_use_control.Rd | 70 man/mantel_fleiss_crit.Rd |only man/odds_ratio.Rd | 404 - man/prop_diff.Rd | 479 - man/prop_diff_test.Rd | 374 - man/prune_occurrences.Rd | 368 - man/response_biomarkers_subgroups.Rd | 220 man/response_subgroups.Rd | 372 - man/rtable2gg.Rd | 98 man/rtables_access.Rd | 254 man/split_cols_by_groups.Rd | 246 man/summarize_ancova.Rd | 382 - man/summarize_glm_count.Rd | 490 - man/summarize_logistic.Rd | 198 man/summarize_num_patients.Rd | 518 - man/summarize_patients_exposure_in_cols.Rd | 496 - man/survival_biomarkers_subgroups.Rd | 334 - man/survival_duration_subgroups.Rd | 390 - man/survival_time.Rd | 354 - man/tern-package.Rd | 90 man/tidy.glm.Rd | 128 man/tidy_coxreg.Rd | 226 man/to_string_matrix.Rd | 116 man/utils_split_funs.Rd | 214 tests/testthat/_snaps/analyze_vars_in_cols.md | 484 - tests/testthat/_snaps/control_survival.md | 90 tests/testthat/_snaps/g_forest/g_forest.svg | 276 - tests/testthat/_snaps/g_forest/g_forest_2lh_above.svg |only tests/testthat/_snaps/g_forest/g_forest_2lh_blw.svg |only tests/testthat/_snaps/g_forest/g_forest_2lh_blw_title.svg |only tests/testthat/_snaps/g_forest/g_forest_NULL.svg |only tests/testthat/_snaps/g_forest/g_forest_NULL_logf.svg |only tests/testthat/_snaps/g_forest/g_forest_ci_NULL.svg |only tests/testthat/_snaps/g_forest/g_forest_ci_NULL_logf.svg |only tests/testthat/_snaps/g_forest/g_forest_custom_1.svg | 158 tests/testthat/_snaps/g_forest/g_forest_custom_2.svg | 174 tests/testthat/_snaps/g_forest/g_forest_custom_3.svg | 166 tests/testthat/_snaps/g_forest/g_forest_exclude_all_rows.svg |only tests/testthat/_snaps/g_forest/g_forest_exclude_rows.svg |only tests/testthat/_snaps/g_forest/g_forest_header_above.svg |only tests/testthat/_snaps/g_forest/g_forest_header_below.svg |only tests/testthat/_snaps/g_forest/g_forest_logx_habove.svg |only tests/testthat/_snaps/g_forest/g_forest_logx_hblw.svg |only tests/testthat/_snaps/g_forest/g_forest_or.svg | 220 tests/testthat/_snaps/g_forest/g_forest_plot_only.svg | 120 tests/testthat/_snaps/g_forest/g_forest_same_x_ci.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_NULL.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_NULL_logf.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_ci_NULL.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_ci_NULL_logf.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_excl_NULL.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_excl_NULL_logf.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_excl_ci_NULL.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_excl_ci_NULL_logf.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_excl_x_NULL.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_excl_x_NULL_logf.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_x_NULL.svg |only tests/testthat/_snaps/g_forest/g_forest_same_x_ci_x_NULL_logf.svg |only tests/testthat/_snaps/g_forest/g_forest_table_only.svg | 185 tests/testthat/_snaps/g_forest/g_forest_title_habove.svg |only tests/testthat/_snaps/g_forest/g_forest_title_hblw.svg |only tests/testthat/_snaps/g_forest/g_forest_title_logx.svg |only tests/testthat/_snaps/g_forest/g_forest_title_vline_null_habove.svg |only tests/testthat/_snaps/g_forest/g_forest_title_vline_null_hblw.svg |only tests/testthat/_snaps/g_forest/g_forest_vline_NULL_header_above.svg |only tests/testthat/_snaps/g_forest/g_forest_vline_NULL_header_below.svg |only tests/testthat/_snaps/g_forest/g_forest_x_NULL.svg |only tests/testthat/_snaps/g_forest/g_forest_x_NULL_logf.svg |only tests/testthat/_snaps/h_km.md | 308 - tests/testthat/_snaps/h_prepare_rsp_table.md |only tests/testthat/_snaps/prop_diff.md | 851 +-- tests/testthat/_snaps/response_subgroups.md | 586 +- tests/testthat/_snaps/summarize_ancova.md | 330 - tests/testthat/_snaps/survival_coxph_pairwise.md | 530 - tests/testthat/_snaps/survival_duration_subgroups.md | 560 +- tests/testthat/_snaps/survival_time.md | 412 - tests/testthat/_snaps/test_proportion_diff.md | 598 +- tests/testthat/setup.R | 96 tests/testthat/test-abnormal.R | 374 - tests/testthat/test-abnormal_by_baseline.R | 284 - tests/testthat/test-abnormal_by_marked.R | 510 - tests/testthat/test-abnormal_by_worst_grade.R | 190 tests/testthat/test-abnormal_lab_worsen_by_baseline.R | 508 - tests/testthat/test-analyze_variables.R | 1628 +++--- tests/testthat/test-analyze_vars_in_cols.R | 844 +-- tests/testthat/test-assert_proportion_data.R |only tests/testthat/test-compare_variables.R | 252 tests/testthat/test-count_cumulative.R | 372 - tests/testthat/test-count_missed_doses.R | 122 tests/testthat/test-count_occurrences.R | 578 +- tests/testthat/test-count_occurrences_by_grade.R | 986 +-- tests/testthat/test-count_patients_events_in_cols.R | 152 tests/testthat/test-count_patients_with_event.R | 410 - tests/testthat/test-count_patients_with_flags.R | 888 +-- tests/testthat/test-count_values.R | 324 - tests/testthat/test-coxph.R | 218 tests/testthat/test-coxreg.R | 1172 ++-- tests/testthat/test-df_explicit_na.R | 328 - tests/testthat/test-estimate_multinomial_rsp.R | 98 tests/testthat/test-estimate_proportion.R | 790 +- tests/testthat/test-fit_rsp_step.R | 228 tests/testthat/test-fit_survival_step.R | 184 tests/testthat/test-formatting_functions.R | 556 +- tests/testthat/test-g_forest.R | 746 ++ tests/testthat/test-g_km.R | 406 - tests/testthat/test-g_lineplot.R | 548 +- tests/testthat/test-get_complete_cases.R |only tests/testthat/test-h_adsl_adlb_merge_using_worst_flag.R | 138 tests/testthat/test-h_km.R | 418 - tests/testthat/test-h_logistic_regression.R | 936 +-- tests/testthat/test-h_map_for_count_abnormal.R | 368 - tests/testthat/test-h_pkparam_sort.R | 36 tests/testthat/test-h_prepare_rsp_table.R |only tests/testthat/test-h_response_biomarkers_subgroups.R | 186 tests/testthat/test-h_response_subgroups.R | 450 - tests/testthat/test-h_stack_by_baskets.R | 156 tests/testthat/test-h_step.R | 1024 +-- tests/testthat/test-h_survival_biomarkers_subgroups.R | 152 tests/testthat/test-h_survival_duration_subgroups.R | 590 +- tests/testthat/test-incidence_rate.R | 302 - tests/testthat/test-individual_patient_plot.R | 140 tests/testthat/test-logistic_regression.R | 560 +- tests/testthat/test-make_afun.R | 534 - tests/testthat/test-mantel_fleiss_crit.R |only tests/testthat/test-odds_ratio.R | 496 - tests/testthat/test-prop_diff.R | 1606 +++-- tests/testthat/test-prune_occurrences.R | 330 - tests/testthat/test-response_biomarkers_subgroups.R | 332 - tests/testthat/test-response_subgroups.R | 698 +- tests/testthat/test-rtables_access.R | 222 tests/testthat/test-score_occurrences.R | 314 - tests/testthat/test-split_cols_by_groups.R | 370 - tests/testthat/test-summarize_ancova.R | 502 - tests/testthat/test-summarize_change.R | 274 - tests/testthat/test-summarize_colvars.R | 128 tests/testthat/test-summarize_coxreg.R | 588 +- tests/testthat/test-summarize_glm_count.R | 942 +-- tests/testthat/test-summarize_num_patients.R | 668 +- tests/testthat/test-summarize_patients_exposure_in_cols.R | 336 - tests/testthat/test-survival_biomarkers_subgroups.R | 358 - tests/testthat/test-survival_coxph_pairwise.R | 572 +- tests/testthat/test-survival_duration_subgroups.R | 608 +- tests/testthat/test-survival_time.R | 508 - tests/testthat/test-survival_timepoint.R | 478 - tests/testthat/test-test_proportion_diff.R | 1083 ++-- tests/testthat/test-utils.R | 1558 ++--- tests/testthat/test-utils_checkmate.R | 463 + tests/testthat/test-utils_default_stats_formats_labels.R | 536 - tests/testthat/test-utils_ggplot.R | 170 tests/testthat/test-utils_grid.R | 106 tests/testthat/test-utils_rtables.R | 590 +- tests/testthat/test-utils_split_fun.R | 282 - vignettes/mantel_fleiss_criterion.Rmd |only vignettes/missing_values.Rmd | 280 - vignettes/tables.Rmd | 918 +-- vignettes/tern.Rmd | 344 - vignettes/tern_formats.Rmd | 556 +- vignettes/tern_functions_guide.Rmd | 286 - vignettes/uncond_exact_prop_diff_ci.Rmd | 436 - 351 files changed, 70071 insertions(+), 68274 deletions(-)
Title: Multimodal Access and Interactive Data Representation
Description: Provides accessible, interactive visualizations through the 'MAIDR'
(Multimodal Access and Interactive Data Representation) system. Converts
'ggplot2' and Base R plots into accessible HTML/SVG formats with keyboard
navigation, screen reader support, and 'sonification' capabilities. Supports
bar charts (simple, grouped, stacked), pie charts, histograms, line plots,
step plots, scatter plots, box plots, violin plots, candlestick (OHLC)
charts, heat maps, density/smooth curves, faceted plots,
multi-panel layouts (including patchwork), and multi-layered plot combinations.
Also makes 'plotly', 'highcharter' and 'echarts4r' 'htmlwidgets' accessible
by attaching the matching 'MAIDR' JavaScript adapter. Enables
data exploration for users with visual impairments through multiple sensory
modalities. For more details see the 'MAIDR' project
<https://maidr.ai/>.
Author: JooYoung Seo [aut, cph, cre],
Niranjan Kalaiselvan [aut]
Maintainer: JooYoung Seo <jseo1005@illinois.edu>
Diff between maidr versions 0.4.0 dated 2026-07-10 and 0.5.0 dated 2026-09-29
maidr-0.4.0/maidr/R/scale_mapping_utils.R |only maidr-0.4.0/maidr/inst/htmlwidgets/lib/maidr-3.69.0 |only maidr-0.4.0/maidr/inst/htmlwidgets/maidr.yaml |only maidr-0.4.0/maidr/man/apply_scale_mapping.Rd |only maidr-0.4.0/maidr/man/extract_scale_mapping.Rd |only maidr-0.4.0/maidr/man/find_panel_grob.Rd |only maidr-0.4.0/maidr/man/scale_mapping_utils.Rd |only maidr-0.4.0/maidr/tests/testthat/test-scale-mapping.R |only maidr-0.5.0/maidr/DESCRIPTION | 42 maidr-0.5.0/maidr/MD5 | 1178 ++- maidr-0.5.0/maidr/NAMESPACE | 146 maidr-0.5.0/maidr/NEWS.md | 997 ++- maidr-0.5.0/maidr/R/axes_utils.R | 639 + maidr-0.5.0/maidr/R/base_r_adapter.R | 1356 +++- maidr-0.5.0/maidr/R/base_r_arg_utils.R |only maidr-0.5.0/maidr/R/base_r_assocplot_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_axis_labels.R |only maidr-0.5.0/maidr/R/base_r_barplot_layer_processor.R | 417 - maidr-0.5.0/maidr/R/base_r_biplot_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_boxplot_layer_processor.R | 790 +- maidr-0.5.0/maidr/R/base_r_bxp_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_candlestick_layer_processor.R | 1187 +-- maidr-0.5.0/maidr/R/base_r_cdplot_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_contour_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_correlogram_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_device_storage.R | 556 - maidr-0.5.0/maidr/R/base_r_dodged_bar_layer_processor.R | 389 - maidr-0.5.0/maidr/R/base_r_dotchart_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_filled_contour_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_fourfold_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_function_classification.R | 480 + maidr-0.5.0/maidr/R/base_r_function_patching.R | 1960 +++-- maidr-0.5.0/maidr/R/base_r_heatmap_layer_processor.R | 618 + maidr-0.5.0/maidr/R/base_r_histogram_layer_processor.R | 411 - maidr-0.5.0/maidr/R/base_r_interaction_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_lag_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_line_layer_processor.R | 958 +- maidr-0.5.0/maidr/R/base_r_mosaic_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_pairs_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_patch_architecture.R | 362 - maidr-0.5.0/maidr/R/base_r_periodogram_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_pie_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_plot_grouping.R | 456 - maidr-0.5.0/maidr/R/base_r_plot_orchestrator.R | 1867 +++-- maidr-0.5.0/maidr/R/base_r_point_layer_processor.R | 568 + maidr-0.5.0/maidr/R/base_r_processor_factory.R | 353 - maidr-0.5.0/maidr/R/base_r_qq_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_qqline_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_selector_utils.R | 61 maidr-0.5.0/maidr/R/base_r_smooth_layer_processor.R | 351 - maidr-0.5.0/maidr/R/base_r_spike_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_spineplot_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_stacked_bar_layer_processor.R | 398 - maidr-0.5.0/maidr/R/base_r_stars_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_state_tracking.R | 363 - maidr-0.5.0/maidr/R/base_r_step_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_stripchart_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_subseries_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_system_init.R | 58 maidr-0.5.0/maidr/R/base_r_termplot_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_unknown_layer_processor.R | 104 maidr-0.5.0/maidr/R/base_r_violin_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_wordcloud_layer_processor.R |only maidr-0.5.0/maidr/R/base_r_wrapper_exports.R | 716 +- maidr-0.5.0/maidr/R/box_order_utils.R |only maidr-0.5.0/maidr/R/cdn_version.R |only maidr-0.5.0/maidr/R/discrete_level_utils.R |only maidr-0.5.0/maidr/R/dotpad_config.R |only maidr-0.5.0/maidr/R/examples.R | 254 maidr-0.5.0/maidr/R/fallback_config.R | 190 maidr-0.5.0/maidr/R/fallback_rendering.R | 584 - maidr-0.5.0/maidr/R/format_utils.R | 870 +- maidr-0.5.0/maidr/R/ggplot2_adapter.R | 1229 +++ maidr-0.5.0/maidr/R/ggplot2_area_layer_processor.R |only maidr-0.5.0/maidr/R/ggplot2_bar_layer_processor.R | 847 +- maidr-0.5.0/maidr/R/ggplot2_boxplot_layer_processor.R | 1081 +-- maidr-0.5.0/maidr/R/ggplot2_candlestick_layer_processor.R | 730 +- maidr-0.5.0/maidr/R/ggplot2_category_labels.R |only maidr-0.5.0/maidr/R/ggplot2_contour_layer_processor.R |only maidr-0.5.0/maidr/R/ggplot2_dodged_bar_layer_processor.R | 723 +- maidr-0.5.0/maidr/R/ggplot2_dotplot_layer_processor.R |only maidr-0.5.0/maidr/R/ggplot2_errorbar_layer_processor.R |only maidr-0.5.0/maidr/R/ggplot2_facet_utils.R | 774 +- maidr-0.5.0/maidr/R/ggplot2_gantt_declaration.R |only maidr-0.5.0/maidr/R/ggplot2_gantt_layer_processor.R |only maidr-0.5.0/maidr/R/ggplot2_heatmap_layer_processor.R | 644 + maidr-0.5.0/maidr/R/ggplot2_hexbin_layer_processor.R |only maidr-0.5.0/maidr/R/ggplot2_histogram_layer_processor.R | 256 maidr-0.5.0/maidr/R/ggplot2_jitter.R |only maidr-0.5.0/maidr/R/ggplot2_line_layer_processor.R | 1681 +++-- maidr-0.5.0/maidr/R/ggplot2_patchwork_utils.R | 1616 +++- maidr-0.5.0/maidr/R/ggplot2_pie_layer_processor.R |only maidr-0.5.0/maidr/R/ggplot2_plot_orchestrator.R | 1224 ++- maidr-0.5.0/maidr/R/ggplot2_point_layer_processor.R | 839 +- maidr-0.5.0/maidr/R/ggplot2_polygon_layer_processor.R |only maidr-0.5.0/maidr/R/ggplot2_print_method.R | 273 maidr-0.5.0/maidr/R/ggplot2_processor_factory.R | 294 maidr-0.5.0/maidr/R/ggplot2_roc_declaration.R |only maidr-0.5.0/maidr/R/ggplot2_roc_layer_processor.R |only maidr-0.5.0/maidr/R/ggplot2_rug_layer_processor.R |only maidr-0.5.0/maidr/R/ggplot2_smooth_layer_processor.R | 747 +- maidr-0.5.0/maidr/R/ggplot2_stacked_bar_layer_processor.R | 829 +- maidr-0.5.0/maidr/R/ggplot2_step_layer_processor.R |only maidr-0.5.0/maidr/R/ggplot2_system_init.R | 460 + maidr-0.5.0/maidr/R/ggplot2_unknown_layer_processor.R | 81 maidr-0.5.0/maidr/R/ggplot2_violin_layer_processor.R | 1742 ++--- maidr-0.5.0/maidr/R/globals.R | 55 maidr-0.5.0/maidr/R/grob_utils.R | 176 maidr-0.5.0/maidr/R/html_dependencies.R | 380 - maidr-0.5.0/maidr/R/htmlwidget_bridge.R |only maidr-0.5.0/maidr/R/knitr_support.R | 835 +- maidr-0.5.0/maidr/R/layer_processor.R | 732 +- maidr-0.5.0/maidr/R/locale_config.R |only maidr-0.5.0/maidr/R/maidr-package.R | 251 maidr-0.5.0/maidr/R/maidr.R | 574 + maidr-0.5.0/maidr/R/maidr_options.R | 285 maidr-0.5.0/maidr/R/maidr_widget.R | 220 maidr-0.5.0/maidr/R/plot_system_registry.R | 291 maidr-0.5.0/maidr/R/processor_factory.R | 129 maidr-0.5.0/maidr/R/rdp_utils.R | 242 maidr-0.5.0/maidr/R/scale_transform_utils.R |only maidr-0.5.0/maidr/R/series_group_utils.R |only maidr-0.5.0/maidr/R/shiny.R | 168 maidr-0.5.0/maidr/R/svg_export.R |only maidr-0.5.0/maidr/R/svg_utils.R | 3309 ++++++---- maidr-0.5.0/maidr/R/system_adapter.R | 72 maidr-0.5.0/maidr/R/vioplot_stats.R |only maidr-0.5.0/maidr/README.md | 540 + maidr-0.5.0/maidr/build/vignette.rds |binary maidr-0.5.0/maidr/inst/CITATION |only maidr-0.5.0/maidr/inst/COPYRIGHTS | 76 maidr-0.5.0/maidr/inst/css/epub-styles.css | 222 maidr-0.5.0/maidr/inst/doc/getting-started.R | 337 - maidr-0.5.0/maidr/inst/doc/getting-started.Rmd | 803 +- maidr-0.5.0/maidr/inst/doc/getting-started.html | 1591 ++-- maidr-0.5.0/maidr/inst/doc/shiny-integration.R | 610 - maidr-0.5.0/maidr/inst/doc/shiny-integration.Rmd | 878 +- maidr-0.5.0/maidr/inst/doc/shiny-integration.html | 1578 ++-- maidr-0.5.0/maidr/inst/dotpad-sdk.json |only maidr-0.5.0/maidr/inst/examples/base_r/bar.R | 42 maidr-0.5.0/maidr/inst/examples/base_r/boxplot.R | 40 maidr-0.5.0/maidr/inst/examples/base_r/dodged_bar.R | 52 maidr-0.5.0/maidr/inst/examples/base_r/faceted_point.R | 50 maidr-0.5.0/maidr/inst/examples/base_r/heatmap.R | 70 maidr-0.5.0/maidr/inst/examples/base_r/histogram.R | 42 maidr-0.5.0/maidr/inst/examples/base_r/line.R | 46 maidr-0.5.0/maidr/inst/examples/base_r/multiline.R | 78 maidr-0.5.0/maidr/inst/examples/base_r/pie.R |only maidr-0.5.0/maidr/inst/examples/base_r/scatter.R | 60 maidr-0.5.0/maidr/inst/examples/base_r/smooth.R | 40 maidr-0.5.0/maidr/inst/examples/base_r/stacked_bar.R | 60 maidr-0.5.0/maidr/inst/examples/base_r/step.R |only maidr-0.5.0/maidr/inst/examples/base_r_plot_types_example.R | 1566 ++-- maidr-0.5.0/maidr/inst/examples/ggplot2/bar.R | 48 maidr-0.5.0/maidr/inst/examples/ggplot2/boxplot.R | 42 maidr-0.5.0/maidr/inst/examples/ggplot2/candlestick.R | 84 maidr-0.5.0/maidr/inst/examples/ggplot2/candlestick_with_ma_volume.R | 136 maidr-0.5.0/maidr/inst/examples/ggplot2/dodged_bar.R | 54 maidr-0.5.0/maidr/inst/examples/ggplot2/faceted.R | 64 maidr-0.5.0/maidr/inst/examples/ggplot2/gantt.R |only maidr-0.5.0/maidr/inst/examples/ggplot2/heatmap.R | 74 maidr-0.5.0/maidr/inst/examples/ggplot2/histogram.R | 44 maidr-0.5.0/maidr/inst/examples/ggplot2/line.R | 50 maidr-0.5.0/maidr/inst/examples/ggplot2/multiline.R | 68 maidr-0.5.0/maidr/inst/examples/ggplot2/patchwork.R | 102 maidr-0.5.0/maidr/inst/examples/ggplot2/pie.R |only maidr-0.5.0/maidr/inst/examples/ggplot2/roc.R |only maidr-0.5.0/maidr/inst/examples/ggplot2/scatter.R | 54 maidr-0.5.0/maidr/inst/examples/ggplot2/smooth.R | 52 maidr-0.5.0/maidr/inst/examples/ggplot2/stacked_bar.R | 54 maidr-0.5.0/maidr/inst/examples/ggplot2/step.R |only maidr-0.5.0/maidr/inst/examples/ggplot2/violin.R | 68 maidr-0.5.0/maidr/inst/examples/ggplot2_all_plot_types_example.R | 1220 +-- maidr-0.5.0/maidr/inst/examples/maidr_dashboard.R | 2354 +++---- maidr-0.5.0/maidr/inst/examples/maidr_output_formats_test.Rmd | 350 - maidr-0.5.0/maidr/inst/examples/maidr_rmarkdown_example.Rmd | 290 maidr-0.5.0/maidr/inst/htmlwidgets/lib/maidr-4.11.0 |only maidr-0.5.0/maidr/inst/htmlwidgets/maidr.js | 259 maidr-0.5.0/maidr/man/BaseRAdapter.Rd | 743 +- maidr-0.5.0/maidr/man/BaseRAssocplotLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRBarplotLayerProcessor.Rd | 461 - maidr-0.5.0/maidr/man/BaseRBiplotLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRBoxplotLayerProcessor.Rd | 417 - maidr-0.5.0/maidr/man/BaseRBxpLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRCandlestickLayerProcessor.Rd | 744 +- maidr-0.5.0/maidr/man/BaseRCdplotLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRContourLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRCorrelogramLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRCpgramLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRDodgedBarLayerProcessor.Rd | 371 - maidr-0.5.0/maidr/man/BaseRDotchartLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRFilledContourLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRFourfoldLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRHeatmapLayerProcessor.Rd | 416 - maidr-0.5.0/maidr/man/BaseRHistogramLayerProcessor.Rd | 457 - maidr-0.5.0/maidr/man/BaseRInteractionLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRLagLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRLineLayerProcessor.Rd | 696 +- maidr-0.5.0/maidr/man/BaseRMosaicLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRPairsLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRPatcher.Rd | 159 maidr-0.5.0/maidr/man/BaseRPieLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRPlotOrchestrator.Rd | 810 +- maidr-0.5.0/maidr/man/BaseRPointLayerProcessor.Rd | 433 - maidr-0.5.0/maidr/man/BaseRProcessorFactory.Rd | 360 - maidr-0.5.0/maidr/man/BaseRQqLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRQqlineLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRSmoothLayerProcessor.Rd | 389 - maidr-0.5.0/maidr/man/BaseRSpectrumLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRSpikeLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRSpineplotLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRStackedBarLayerProcessor.Rd | 382 - maidr-0.5.0/maidr/man/BaseRStarsLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRStepLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRStripchartLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRSubseriesLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRTermplotLayerProcessor.Rd |only maidr-0.5.0/maidr/man/BaseRUnknownLayerProcessor.Rd | 265 maidr-0.5.0/maidr/man/BaseRViolinLayerProcessor.Rd |only maidr-0.5.0/maidr/man/FOURFOLD_STD_CHOICES.Rd |only maidr-0.5.0/maidr/man/GeomRoc.Rd |only maidr-0.5.0/maidr/man/Ggplot2Adapter.Rd | 715 +- maidr-0.5.0/maidr/man/Ggplot2AreaLayerProcessor.Rd |only maidr-0.5.0/maidr/man/Ggplot2BarLayerProcessor.Rd | 562 + maidr-0.5.0/maidr/man/Ggplot2BoxplotLayerProcessor.Rd | 743 +- maidr-0.5.0/maidr/man/Ggplot2CandlestickProcessor.Rd | 660 + maidr-0.5.0/maidr/man/Ggplot2ContourLayerProcessor.Rd |only maidr-0.5.0/maidr/man/Ggplot2DodgedBarLayerProcessor.Rd | 331 - maidr-0.5.0/maidr/man/Ggplot2DotplotLayerProcessor.Rd |only maidr-0.5.0/maidr/man/Ggplot2ErrorbarLayerProcessor.Rd |only maidr-0.5.0/maidr/man/Ggplot2GanttLayerProcessor.Rd |only maidr-0.5.0/maidr/man/Ggplot2HeatmapLayerProcessor.Rd | 451 + maidr-0.5.0/maidr/man/Ggplot2HexbinLayerProcessor.Rd |only maidr-0.5.0/maidr/man/Ggplot2HistogramLayerProcessor.Rd | 283 maidr-0.5.0/maidr/man/Ggplot2LineLayerProcessor.Rd | 1371 ++-- maidr-0.5.0/maidr/man/Ggplot2PieLayerProcessor.Rd |only maidr-0.5.0/maidr/man/Ggplot2PlotOrchestrator.Rd | 808 +- maidr-0.5.0/maidr/man/Ggplot2PointLayerProcessor.Rd | 543 - maidr-0.5.0/maidr/man/Ggplot2PolygonLayerProcessor.Rd |only maidr-0.5.0/maidr/man/Ggplot2ProcessorFactory.Rd | 359 - maidr-0.5.0/maidr/man/Ggplot2RocLayerProcessor.Rd |only maidr-0.5.0/maidr/man/Ggplot2RugLayerProcessor.Rd |only maidr-0.5.0/maidr/man/Ggplot2SmoothLayerProcessor.Rd | 654 + maidr-0.5.0/maidr/man/Ggplot2StackedBarProcessor.Rd | 335 - maidr-0.5.0/maidr/man/Ggplot2StepLayerProcessor.Rd |only maidr-0.5.0/maidr/man/Ggplot2UnknownLayerProcessor.Rd | 254 maidr-0.5.0/maidr/man/Ggplot2ViolinLayerProcessor.Rd | 1078 ++- maidr-0.5.0/maidr/man/INTERVAL_GROUP_AES.Rd |only maidr-0.5.0/maidr/man/JITTER_POSITION_CLASSES.Rd |only maidr-0.5.0/maidr/man/LayerProcessor.Rd | 1042 ++- maidr-0.5.0/maidr/man/MAIDR_INTERNET_CACHE_TTL.Rd |only maidr-0.5.0/maidr/man/MAIDR_VERSION.Rd | 28 maidr-0.5.0/maidr/man/PlotSystemRegistry.Rd | 473 - maidr-0.5.0/maidr/man/ProcessorFactory.Rd | 238 maidr-0.5.0/maidr/man/RUG_AXIS_LABEL.Rd |only maidr-0.5.0/maidr/man/SINGLE_SELECTOR_LAYER_TYPES.Rd |only maidr-0.5.0/maidr/man/SystemAdapter.Rd | 223 maidr-0.5.0/maidr/man/WRAPPED_SUGGESTS.Rd |only maidr-0.5.0/maidr/man/accuracy_to_decimals.Rd | 38 maidr-0.5.0/maidr/man/add_maidr_data_to_svg.Rd | 40 maidr-0.5.0/maidr/man/adjust_chartseries_bracket.Rd | 92 maidr-0.5.0/maidr/man/adjust_chartseries_bracket_doc.Rd |only maidr-0.5.0/maidr/man/announce_masking.Rd |only maidr-0.5.0/maidr/man/apply_barplot_patches.Rd | 36 maidr-0.5.0/maidr/man/apply_barplot_sorting.Rd | 36 maidr-0.5.0/maidr/man/as_axis_config.Rd | 40 maidr-0.5.0/maidr/man/as_drawn.Rd |only maidr-0.5.0/maidr/man/attach_axis_format.Rd | 55 maidr-0.5.0/maidr/man/attach_series_group_axis.Rd |only maidr-0.5.0/maidr/man/augment_leaf_plot.Rd |only maidr-0.5.0/maidr/man/augment_patchwork_leaves.Rd |only maidr-0.5.0/maidr/man/axes_utils.Rd | 32 maidr-0.5.0/maidr/man/axis_grid_info.Rd |only maidr-0.5.0/maidr/man/base-r-wrappers.Rd | 403 - maidr-0.5.0/maidr/man/base_r_axis_labels.Rd |only maidr-0.5.0/maidr/man/base_r_categorical_axes.Rd |only maidr-0.5.0/maidr/man/base_r_step_direction.Rd |only maidr-0.5.0/maidr/man/box_order_utils.Rd |only maidr-0.5.0/maidr/man/build_axes.Rd | 47 maidr-0.5.0/maidr/man/build_axis_config.Rd |only maidr-0.5.0/maidr/man/build_format_config.Rd | 52 maidr-0.5.0/maidr/man/build_interactive_svg.Rd |only maidr-0.5.0/maidr/man/build_svg_document.Rd |only maidr-0.5.0/maidr/man/call_original_plot_hook.Rd |only maidr-0.5.0/maidr/man/cancel_auto_show.Rd | 27 maidr-0.5.0/maidr/man/category_at.Rd |only maidr-0.5.0/maidr/man/chartseries_ta_calls.Rd |only maidr-0.5.0/maidr/man/classify_function.Rd | 36 maidr-0.5.0/maidr/man/clean_maidr_args.Rd | 38 maidr-0.5.0/maidr/man/clear_all_device_storage.Rd | 30 maidr-0.5.0/maidr/man/clear_device_storage.Rd | 36 maidr-0.5.0/maidr/man/clear_plot_calls.Rd | 36 maidr-0.5.0/maidr/man/clip_chartseries_panel_rects.Rd |only maidr-0.5.0/maidr/man/close_maidr_temp_device.Rd | 30 maidr-0.5.0/maidr/man/collapse_lines_to_multiseries.Rd | 40 maidr-0.5.0/maidr/man/collect_candlestick_layers.Rd | 24 maidr-0.5.0/maidr/man/collect_grob_names.Rd |only maidr-0.5.0/maidr/man/collect_gtable_panels.Rd |only maidr-0.5.0/maidr/man/collect_viewport_paths.Rd |only maidr-0.5.0/maidr/man/combine_facet_layer_data.Rd | 34 maidr-0.5.0/maidr/man/combine_facet_layer_selectors.Rd | 34 maidr-0.5.0/maidr/man/compute_panel_slots.Rd |only maidr-0.5.0/maidr/man/compute_vioplot_stats.Rd |only maidr-0.5.0/maidr/man/contour_curves.Rd |only maidr-0.5.0/maidr/man/count_leaf_panels.Rd |only maidr-0.5.0/maidr/man/create_axis_wrapper.Rd | 40 maidr-0.5.0/maidr/man/create_barplot_wrapper.Rd | 36 maidr-0.5.0/maidr/man/create_enhanced_svg.Rd | 44 maidr-0.5.0/maidr/man/create_fallback_html.Rd | 65 maidr-0.5.0/maidr/man/create_fallback_iframe.Rd | 62 maidr-0.5.0/maidr/man/create_fallback_image.Rd | 66 maidr-0.5.0/maidr/man/create_function_wrapper.Rd | 40 maidr-0.5.0/maidr/man/create_html_document.Rd | 42 maidr-0.5.0/maidr/man/create_inline_image.Rd | 48 maidr-0.5.0/maidr/man/create_knitr_iframe.Rd |only maidr-0.5.0/maidr/man/create_maidr_html.Rd | 66 maidr-0.5.0/maidr/man/create_maidr_iframe.Rd | 74 maidr-0.5.0/maidr/man/create_maidr_widget_internal.Rd | 36 maidr-0.5.0/maidr/man/create_nse_wrapper.Rd |only maidr-0.5.0/maidr/man/create_standalone_html.Rd | 52 maidr-0.5.0/maidr/man/curve_default_labels.Rd |only maidr-0.5.0/maidr/man/curve_recorded_values.Rd |only maidr-0.5.0/maidr/man/data_has_series_groups.Rd |only maidr-0.5.0/maidr/man/detect_panel_configuration.Rd | 36 maidr-0.5.0/maidr/man/detect_scales_format_type.Rd | 52 maidr-0.5.0/maidr/man/discrete_axis_labels.Rd |only maidr-0.5.0/maidr/man/discrete_level_order.Rd |only maidr-0.5.0/maidr/man/dispatched_definition.Rd |only maidr-0.5.0/maidr/man/dispatched_processor_classes.Rd |only maidr-0.5.0/maidr/man/display_html.Rd | 30 maidr-0.5.0/maidr/man/display_html_file.Rd | 30 maidr-0.5.0/maidr/man/dot-base_r_function_classes.Rd | 37 maidr-0.5.0/maidr/man/dot-jitter_cache.Rd |only maidr-0.5.0/maidr/man/dot-maidr_base_r_session.Rd | 30 maidr-0.5.0/maidr/man/dot-maidr_chartseries_ta_warned.Rd | 30 maidr-0.5.0/maidr/man/dot-maidr_fourfoldplot_declined.Rd |only maidr-0.5.0/maidr/man/dot-maidr_ggplot_state.Rd | 30 maidr-0.5.0/maidr/man/dot-maidr_patching_env.Rd | 30 maidr-0.5.0/maidr/man/dot-maidr_vioplot_default_range.Rd |only maidr-0.5.0/maidr/man/dot-maidr_vioplot_grob_kinds.Rd |only maidr-0.5.0/maidr/man/dot-maidr_vioplot_onload_hook.Rd |only maidr-0.5.0/maidr/man/dot-maidr_wordcloud_defaults.Rd |only maidr-0.5.0/maidr/man/dot-maidr_wordcloud_onload_hook.Rd |only maidr-0.5.0/maidr/man/dotplot_bins.Rd |only maidr-0.5.0/maidr/man/drop_empty_selectors.Rd |only maidr-0.5.0/maidr/man/embed_volume_into_candle_data.Rd | 40 maidr-0.5.0/maidr/man/ensure_maidr_device.Rd | 30 maidr-0.5.0/maidr/man/escape_for_attribute.Rd |only maidr-0.5.0/maidr/man/export_svg_scene.Rd |only maidr-0.5.0/maidr/man/extract_axis_format.Rd | 42 maidr-0.5.0/maidr/man/extract_axis_label.Rd | 42 maidr-0.5.0/maidr/man/extract_body_grob_id.Rd | 26 maidr-0.5.0/maidr/man/extract_format_config.Rd | 42 maidr-0.5.0/maidr/man/extract_from_scales_closure.Rd | 40 maidr-0.5.0/maidr/man/extract_leaf_plot_layout.Rd | 40 maidr-0.5.0/maidr/man/extract_patchwork_leaves.Rd | 36 maidr-0.5.0/maidr/man/extract_rect_index_from_id.Rd | 28 maidr-0.5.0/maidr/man/extract_vioplot_samples.Rd |only maidr-0.5.0/maidr/man/facet_group_rows.Rd |only maidr-0.5.0/maidr/man/figures/logo.svg | 1192 +-- maidr-0.5.0/maidr/man/find_children_by_type.Rd | 38 maidr-0.5.0/maidr/man/find_graphics_plot_grob.Rd | 49 maidr-0.5.0/maidr/man/find_graphics_plot_grobs.Rd |only maidr-0.5.0/maidr/man/find_gtable_panel_grob.Rd |only maidr-0.5.0/maidr/man/find_layer_slot_grob.Rd |only maidr-0.5.0/maidr/man/find_original_function.Rd | 36 maidr-0.5.0/maidr/man/find_patchwork_panels.Rd | 38 maidr-0.5.0/maidr/man/flatten_single_selectors.Rd |only maidr-0.5.0/maidr/man/flip_negative_extent.Rd |only maidr-0.5.0/maidr/man/format-utils.Rd | 20 maidr-0.5.0/maidr/man/format_panel_fallback_warning.Rd |only maidr-0.5.0/maidr/man/formula_margin_table.Rd |only maidr-0.5.0/maidr/man/formula_two_way_table.Rd |only maidr-0.5.0/maidr/man/fourfold_decline_reason.Rd |only maidr-0.5.0/maidr/man/fourfold_reads_counts.Rd |only maidr-0.5.0/maidr/man/fourfold_std.Rd |only maidr-0.5.0/maidr/man/generate_robust_css_selector.Rd | 40 maidr-0.5.0/maidr/man/generate_robust_selector.Rd | 64 maidr-0.5.0/maidr/man/generate_unique_id.Rd | 32 maidr-0.5.0/maidr/man/geom_grob_prefix.Rd |only maidr-0.5.0/maidr/man/get_all_function_names.Rd | 30 maidr-0.5.0/maidr/man/get_all_patchable_functions.Rd | 30 maidr-0.5.0/maidr/man/get_all_plot_groups.Rd | 36 maidr-0.5.0/maidr/man/get_current_plot_index.Rd | 36 maidr-0.5.0/maidr/man/get_device_calls.Rd | 36 maidr-0.5.0/maidr/man/get_device_calls_by_class.Rd | 46 maidr-0.5.0/maidr/man/get_device_state.Rd | 51 maidr-0.5.0/maidr/man/get_device_storage.Rd | 36 maidr-0.5.0/maidr/man/get_device_storage_summary.Rd | 30 maidr-0.5.0/maidr/man/get_facet_groups.Rd | 38 maidr-0.5.0/maidr/man/get_fallback_format.Rd | 30 maidr-0.5.0/maidr/man/get_functions_by_class.Rd | 36 maidr-0.5.0/maidr/man/get_global_registry.Rd | 30 maidr-0.5.0/maidr/man/get_group_count.Rd | 36 maidr-0.5.0/maidr/man/get_high_level_calls.Rd | 36 maidr-0.5.0/maidr/man/get_layout_calls.Rd | 36 maidr-0.5.0/maidr/man/get_low_level_calls.Rd | 36 maidr-0.5.0/maidr/man/get_original_function.Rd | 36 maidr-0.5.0/maidr/man/get_panel_config.Rd | 36 maidr-0.5.0/maidr/man/get_plot_calls.Rd | 36 maidr-0.5.0/maidr/man/get_plot_group.Rd | 40 maidr-0.5.0/maidr/man/group_device_calls.Rd | 66 maidr-0.5.0/maidr/man/has_device_calls.Rd | 36 maidr-0.5.0/maidr/man/has_sm_package.Rd |only maidr-0.5.0/maidr/man/heatmap_applies_revc.Rd |only maidr-0.5.0/maidr/man/heatmap_caller_labels.Rd |only maidr-0.5.0/maidr/man/hexbin_lattice.Rd |only maidr-0.5.0/maidr/man/initialize_base_r_patching.Rd | 56 maidr-0.5.0/maidr/man/initialize_base_r_system.Rd | 32 maidr-0.5.0/maidr/man/initialize_ggplot2_system.Rd | 32 maidr-0.5.0/maidr/man/initialize_maidr_options.Rd | 26 maidr-0.5.0/maidr/man/inject_candlestick_open_close.Rd | 70 maidr-0.5.0/maidr/man/inject_candlestick_open_close_doc.Rd |only maidr-0.5.0/maidr/man/inject_violin_kde_svg_coords.Rd | 57 maidr-0.5.0/maidr/man/is_base_r_enabled.Rd | 30 maidr-0.5.0/maidr/man/is_chartseries_volume_ta.Rd |only maidr-0.5.0/maidr/man/is_fallback_enabled.Rd | 30 maidr-0.5.0/maidr/man/is_fallback_warning_enabled.Rd | 30 maidr-0.5.0/maidr/man/is_flat_record.Rd |only maidr-0.5.0/maidr/man/is_formula_argument.Rd |only maidr-0.5.0/maidr/man/is_ggplot2_enabled.Rd | 30 maidr-0.5.0/maidr/man/is_grouped_dotchart.Rd |only maidr-0.5.0/maidr/man/is_high_level_function.Rd | 36 maidr-0.5.0/maidr/man/is_html_output.Rd | 32 maidr-0.5.0/maidr/man/is_internal_call.Rd | 30 maidr-0.5.0/maidr/man/is_layout_function.Rd | 36 maidr-0.5.0/maidr/man/is_low_level_function.Rd | 36 maidr-0.5.0/maidr/man/is_maidr_enabled.Rd | 30 maidr-0.5.0/maidr/man/is_maidr_on.Rd | 30 maidr-0.5.0/maidr/man/is_maidr_temp_device.Rd | 30 maidr-0.5.0/maidr/man/is_multipanel_active.Rd | 36 maidr-0.5.0/maidr/man/is_multipanel_config.Rd |only maidr-0.5.0/maidr/man/is_patching_active.Rd | 30 maidr-0.5.0/maidr/man/is_patching_enabled.Rd | 32 maidr-0.5.0/maidr/man/is_record_run.Rd |only maidr-0.5.0/maidr/man/is_record_schema.Rd |only maidr-0.5.0/maidr/man/is_spike_plot_type.Rd |only maidr-0.5.0/maidr/man/is_step_plot_type.Rd |only maidr-0.5.0/maidr/man/is_two_way_table.Rd |only maidr-0.5.0/maidr/man/is_volume_only_bar_panel.Rd | 24 maidr-0.5.0/maidr/man/is_wrapped_leaf.Rd |only maidr-0.5.0/maidr/man/jitter_cache_get.Rd |only maidr-0.5.0/maidr/man/jitter_cache_set.Rd |only maidr-0.5.0/maidr/man/join_selector_list.Rd |only maidr-0.5.0/maidr/man/knit_print.density.Rd | 48 maidr-0.5.0/maidr/man/knit_print.ggplot.Rd | 50 maidr-0.5.0/maidr/man/knit_print.histogram.Rd | 48 maidr-0.5.0/maidr/man/label_names_its_lane.Rd |only maidr-0.5.0/maidr/man/lane_name.Rd |only maidr-0.5.0/maidr/man/layer_declared_lane_axis.Rd |only maidr-0.5.0/maidr/man/layer_draws_bare_polyline.Rd |only maidr-0.5.0/maidr/man/layer_is_annotation.Rd |only maidr-0.5.0/maidr/man/layer_is_declared_gantt.Rd |only maidr-0.5.0/maidr/man/layer_is_jittered.Rd |only maidr-0.5.0/maidr/man/layer_maps_roc_rates.Rd |only maidr-0.5.0/maidr/man/layers_that_drew_nothing.Rd |only maidr-0.5.0/maidr/man/level_keys.Rd |only maidr-0.5.0/maidr/man/level_label.Rd |only maidr-0.5.0/maidr/man/locate_binding_env.Rd |only maidr-0.5.0/maidr/man/log_plot_call_to_device.Rd | 62 maidr-0.5.0/maidr/man/maidr-options.Rd | 205 maidr-0.5.0/maidr/man/maidr-package.Rd | 312 maidr-0.5.0/maidr/man/maidr_adapter_dependency.Rd |only maidr-0.5.0/maidr/man/maidr_bound_cdn_timeout.Rd |only maidr-0.5.0/maidr/man/maidr_cdn_deparse.Rd |only maidr-0.5.0/maidr/man/maidr_cdn_loader_script.Rd |only maidr-0.5.0/maidr/man/maidr_cdn_resolver_request.Rd |only maidr-0.5.0/maidr/man/maidr_cdn_timeout.Rd |only maidr-0.5.0/maidr/man/maidr_cdn_url.Rd | 39 maidr-0.5.0/maidr/man/maidr_cdn_version.Rd |only maidr-0.5.0/maidr/man/maidr_cdn_version_pin.Rd |only maidr-0.5.0/maidr/man/maidr_cdn_warn_once.Rd |only maidr-0.5.0/maidr/man/maidr_compare_identifier.Rd |only maidr-0.5.0/maidr/man/maidr_compare_prerelease.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_config.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_config_dependency.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_config_script.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_download_file.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_file_mismatch.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_local_dependency.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_path_is_safe.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_read_manifest.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_sdk_available.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_sdk_dependency.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_sdk_dir.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_sdk_manifest.Rd |only maidr-0.5.0/maidr/man/maidr_dotpad_setting.Rd |only maidr-0.5.0/maidr/man/maidr_download_dotpad_sdk.Rd |only maidr-0.5.0/maidr/man/maidr_fetch_latest_cdn_version.Rd |only maidr-0.5.0/maidr/man/maidr_gantt.Rd |only maidr-0.5.0/maidr/man/maidr_get_fallback.Rd | 56 maidr-0.5.0/maidr/man/maidr_html_dependencies.Rd | 90 maidr-0.5.0/maidr/man/maidr_htmlwidget.Rd |only maidr-0.5.0/maidr/man/maidr_htmlwidget_adapter.Rd |only maidr-0.5.0/maidr/man/maidr_iframe_host_script.Rd |only maidr-0.5.0/maidr/man/maidr_inline_asset_tags.Rd |only maidr-0.5.0/maidr/man/maidr_internet_available.Rd |only maidr-0.5.0/maidr/man/maidr_is_older_than_bundled.Rd |only maidr-0.5.0/maidr/man/maidr_is_semver.Rd |only maidr-0.5.0/maidr/man/maidr_js_string_literal.Rd |only maidr-0.5.0/maidr/man/maidr_local_assets.Rd | 34 maidr-0.5.0/maidr/man/maidr_locale_base_url.Rd |only maidr-0.5.0/maidr/man/maidr_locale_config_dependency.Rd |only maidr-0.5.0/maidr/man/maidr_locale_config_script.Rd |only maidr-0.5.0/maidr/man/maidr_normalize_cdn_pin.Rd |only maidr-0.5.0/maidr/man/maidr_off.Rd | 38 maidr-0.5.0/maidr/man/maidr_on.Rd | 77 maidr-0.5.0/maidr/man/maidr_output.Rd | 56 maidr-0.5.0/maidr/man/maidr_page_bundle_dependency.Rd |only maidr-0.5.0/maidr/man/maidr_parse_resolver_response.Rd |only maidr-0.5.0/maidr/man/maidr_plot_hook.Rd | 48 maidr-0.5.0/maidr/man/maidr_print_ggplot.Rd | 52 maidr-0.5.0/maidr/man/maidr_reset_cdn_cache.Rd |only maidr-0.5.0/maidr/man/maidr_resolve_cdn_version.Rd |only maidr-0.5.0/maidr/man/maidr_responsive_dependency.Rd | 44 maidr-0.5.0/maidr/man/maidr_roc.Rd |only maidr-0.5.0/maidr/man/maidr_set_fallback.Rd | 104 maidr-0.5.0/maidr/man/maidr_widget.Rd | 96 maidr-0.5.0/maidr/man/maidr_widget_output.Rd | 48 maidr-0.5.0/maidr/man/map_visual_to_dom_panel.Rd | 58 maidr-0.5.0/maidr/man/mask_advice.Rd |only maidr-0.5.0/maidr/man/match_recorded_args.Rd |only maidr-0.5.0/maidr/man/merge_candlestick_volume_panels.Rd | 36 maidr-0.5.0/maidr/man/merge_line_layers.Rd | 48 maidr-0.5.0/maidr/man/muffle_promise_restart.Rd |only maidr-0.5.0/maidr/man/no_base_r_plots_message.Rd |only maidr-0.5.0/maidr/man/non_ascii_to_references.Rd |only maidr-0.5.0/maidr/man/normalise_negative_rects.Rd |only maidr-0.5.0/maidr/man/on_high_level_call.Rd | 40 maidr-0.5.0/maidr/man/on_layout_call.Rd | 44 maidr-0.5.0/maidr/man/open_maidr_temp_device.Rd | 32 maidr-0.5.0/maidr/man/open_svg_device.Rd |only maidr-0.5.0/maidr/man/organize_facet_grid.Rd | 38 maidr-0.5.0/maidr/man/package_masks_maidr.Rd |only maidr-0.5.0/maidr/man/packages_masking_maidr.Rd |only maidr-0.5.0/maidr/man/panel_has_layer_of_type.Rd | 40 maidr-0.5.0/maidr/man/panel_layer_of_type.Rd | 24 maidr-0.5.0/maidr/man/panel_slot_positions.Rd |only maidr-0.5.0/maidr/man/panel_transformation.Rd |only maidr-0.5.0/maidr/man/periodogram_args.Rd |only maidr-0.5.0/maidr/man/periodogram_points.Rd |only maidr-0.5.0/maidr/man/periodogram_selector.Rd |only maidr-0.5.0/maidr/man/perpendicular_distance.Rd | 44 maidr-0.5.0/maidr/man/polygon_cell_selector.Rd |only maidr-0.5.0/maidr/man/polyline_layer_position.Rd |only maidr-0.5.0/maidr/man/polylines_within.Rd |only maidr-0.5.0/maidr/man/positional_axis_label.Rd |only maidr-0.5.0/maidr/man/prefix_to_currency_code.Rd | 38 maidr-0.5.0/maidr/man/print_ggplot_natively.Rd |only maidr-0.5.0/maidr/man/process_facet_panel.Rd | 86 maidr-0.5.0/maidr/man/process_faceted_plot_data.Rd | 62 maidr-0.5.0/maidr/man/process_patchwork_panel.Rd | 79 maidr-0.5.0/maidr/man/process_patchwork_plot_data.Rd | 58 maidr-0.5.0/maidr/man/processor_class_exists.Rd |only maidr-0.5.0/maidr/man/quantmod_mask_advice.Rd |only maidr-0.5.0/maidr/man/quantmod_masks_maidr.Rd |only maidr-0.5.0/maidr/man/r_date_format_to_intl_options.Rd | 36 maidr-0.5.0/maidr/man/r_date_format_to_js_function.Rd | 44 maidr-0.5.0/maidr/man/rdp.Rd | 42 maidr-0.5.0/maidr/man/record_chartseries_name.Rd |only maidr-0.5.0/maidr/man/recorded_axis_label.Rd |only maidr-0.5.0/maidr/man/recorded_barplot_height.Rd |only maidr-0.5.0/maidr/man/recorded_flag.Rd |only maidr-0.5.0/maidr/man/recorded_formula.Rd |only maidr-0.5.0/maidr/man/recorded_formula_frame.Rd |only maidr-0.5.0/maidr/man/recorded_main_title.Rd |only maidr-0.5.0/maidr/man/recorded_two_way_table.Rd |only maidr-0.5.0/maidr/man/records_as_frames.Rd |only maidr-0.5.0/maidr/man/rect_anchor.Rd |only maidr-0.5.0/maidr/man/rect_cell_selector.Rd |only maidr-0.5.0/maidr/man/rect_gantt_frame.Rd |only maidr-0.5.0/maidr/man/register_ggplot2_print_method.Rd | 26 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maidr-0.5.0/maidr/man/undisplace_layer.Rd |only maidr-0.5.0/maidr/man/undisplaced_layer_data.Rd |only maidr-0.5.0/maidr/man/untransform_positions.Rd |only maidr-0.5.0/maidr/man/update_device_state.Rd | 40 maidr-0.5.0/maidr/man/usable_xy_coords.Rd |only maidr-0.5.0/maidr/man/validate_axes.Rd | 68 maidr-0.5.0/maidr/man/vioplot_grob_pattern.Rd |only maidr-0.5.0/maidr/man/vioplot_grob_selector.Rd |only maidr-0.5.0/maidr/man/walk_svg_scene.Rd |only maidr-0.5.0/maidr/man/warn_chartseries_ta_unsupported.Rd | 43 maidr-0.5.0/maidr/man/warn_fourfoldplot_declined.Rd |only maidr-0.5.0/maidr/man/warn_panel_fallback.Rd |only maidr-0.5.0/maidr/man/wrap_function.Rd | 40 maidr-0.5.0/maidr/man/wrap_s3_generics.Rd | 26 maidr-0.5.0/maidr/tests/testthat.R | 24 maidr-0.5.0/maidr/tests/testthat/helper-processors.R | 743 +- maidr-0.5.0/maidr/tests/testthat/helper-render.R |only maidr-0.5.0/maidr/tests/testthat/helper.R | 573 + maidr-0.5.0/maidr/tests/testthat/setup-cdn.R |only maidr-0.5.0/maidr/tests/testthat/test-adapters.R | 1873 +++-- maidr-0.5.0/maidr/tests/testthat/test-bar-na-category.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-assocplot.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-audit-leftovers.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-axis-labels.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-bar-orientation.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-biplot.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-boxplot-outliers.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-bxp.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-candlestick.R | 1221 ++- maidr-0.5.0/maidr/tests/testthat/test-base-r-cdplot.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-contour-fallback.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-contour.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-correlogram.R |only maidr-0.5.0/maidr/tests/testthat/test-base-r-curve.R |only 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Title: Read and Write 'Apache Parquet' Files
Description: Read and write 'Apache Parquet' files. Whole files are read with
a single call, and larger ones can be opened to inspect their schema and
read selected columns, row groups, or batches. Built on the bundled C
library 'carquet', with no required R package dependencies.
Author: Pedro Baltazar [aut, cre, cph],
Johan HG Natter [aut, cph] ),
vctrs authors [ctb, cph] helper )
Maintainer: Pedro Baltazar <pedrobtz@gmail.com>
Diff between qio versions 0.1.0 dated 2026-09-28 and 0.1.1 dated 2026-09-29
DESCRIPTION | 6 ++-- MD5 | 14 +++++------ NEWS.md | 9 +++++++ README.md | 9 ++++++- src/carquet/encoding/dictionary.c | 8 ++++-- src/carquet/writer/column_writer.c | 13 +++++++++- src/qio_file.c | 45 ++++++++++++++++++++++++++----------- tests/testthat/test-qio.R | 6 ++++ 8 files changed, 82 insertions(+), 28 deletions(-)
Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Description: Functions, data sets, analyses and examples from the
third edition of the book
''A Handbook of Statistical Analyses Using R'' (Torsten Hothorn and Brian S.
Everitt, Chapman & Hall/CRC, 2014). The first chapter
of the book, which is entitled ''An Introduction to R'',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
Sweave source code for slides of selected chapters is included in
this package (see HSAUR3/inst/slides). The publishers web page is
'<https://www.routledge.com/A-Handbook-of-Statistical-Analyses-using-R/Hothorn-Everitt/p/book/9781482204582>'.
Author: Torsten Hothorn [aut, cre] ,
Brian S. Everitt [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between HSAUR3 versions 1.0-15 dated 2024-08-17 and 1.0-16 dated 2026-09-29
DESCRIPTION | 16 +- MD5 | 160 +++++++++++++------------- build/vignette.rds |binary data/BCG.rda |binary data/CYGOB1.rda |binary data/Lanza.rda |binary data/birthdeathrates.rda |binary data/bladdercancer.rda |binary data/epilepsy.rda |binary data/foster.rda |binary data/heptathlon.rda |binary data/meteo.rda |binary data/orallesions.rda |binary data/phosphate.rda |binary data/pistonrings.rda |binary data/planets.rda |binary data/plasma.rda |binary data/polyps.rda |binary data/rearrests.rda |binary data/roomwidth.rda |binary data/schizophrenia.rda |binary data/schizophrenia2.rda |binary data/smoking.rda |binary data/students.rda |binary data/suicides.rda |binary data/toothpaste.rda |binary data/voting.rda |binary data/water.rda |binary data/watervoles.rda |binary data/waves.rda |binary data/weightgain.rda |binary inst/LaTeXBibTeX/HSAUR.bib | 98 +++++++-------- inst/NEWS | 4 inst/doc/Ch_analysing_longitudinal_dataI.R | 2 inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary inst/doc/Ch_analysing_longitudinal_dataII.R | 2 inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary inst/doc/Ch_analysis_of_variance.R | 2 inst/doc/Ch_analysis_of_variance.pdf |binary inst/doc/Ch_bayesian_inference.R | 2 inst/doc/Ch_bayesian_inference.pdf |binary inst/doc/Ch_cluster_analysis.R | 2 inst/doc/Ch_cluster_analysis.pdf |binary inst/doc/Ch_conditional_inference.R | 2 inst/doc/Ch_conditional_inference.pdf |binary inst/doc/Ch_density_estimation.R | 2 inst/doc/Ch_density_estimation.pdf |binary inst/doc/Ch_errata.R | 2 inst/doc/Ch_errata.pdf |binary inst/doc/Ch_gam.R | 2 inst/doc/Ch_gam.pdf |binary inst/doc/Ch_graphical_display.R | 2 inst/doc/Ch_graphical_display.pdf |binary inst/doc/Ch_introduction_to_R.R | 4 inst/doc/Ch_introduction_to_R.Rnw | 22 +-- inst/doc/Ch_introduction_to_R.pdf |binary inst/doc/Ch_logistic_regression_glm.R | 2 inst/doc/Ch_logistic_regression_glm.pdf |binary inst/doc/Ch_meta_analysis.R | 2 inst/doc/Ch_meta_analysis.pdf |binary inst/doc/Ch_missing_values.R | 2 inst/doc/Ch_missing_values.pdf |binary inst/doc/Ch_multidimensional_scaling.R | 2 inst/doc/Ch_multidimensional_scaling.pdf |binary inst/doc/Ch_multiple_linear_regression.R | 2 inst/doc/Ch_multiple_linear_regression.pdf |binary inst/doc/Ch_principal_components_analysis.R | 2 inst/doc/Ch_principal_components_analysis.pdf |binary inst/doc/Ch_quantile_regression.R | 2 inst/doc/Ch_quantile_regression.pdf |binary inst/doc/Ch_recursive_partitioning.R | 2 inst/doc/Ch_recursive_partitioning.pdf |binary inst/doc/Ch_simple_inference.R | 2 inst/doc/Ch_simple_inference.pdf |binary inst/doc/Ch_simultaneous_inference.R | 2 inst/doc/Ch_simultaneous_inference.pdf |binary inst/doc/Ch_survival_analysis.R | 2 inst/doc/Ch_survival_analysis.pdf |binary vignettes/Ch_introduction_to_R.Rnw | 22 +-- vignettes/LaTeXBibTeX/HSAUR.bib | 98 +++++++-------- vignettes/tables/rec.tex | 14 +- 81 files changed, 218 insertions(+), 262 deletions(-)
More information about debiasedInference at CRAN
Permanent link
Title: Outlier Detection via Pruning Mutual Reachability Minimum
Spanning Trees
Description: Implements an anomaly detection algorithm based on a dataset's
mutual reachability minimum spanning tree: 'deadwood' prunes
protruding tree segments and marks small debris as outliers;
see Gagolewski (2026) <https://deadwood.gagolewski.com/>.
More precisely, tree edges with weights greater than the detected elbow
point are removed. All the resulting connected components whose sizes do
not exceed a prespecified threshold are deemed anomalous. The use of
a mutual reachability distance pulls peripheral observations farther away
from one another. If the dataset is comprised of well-separated clusters
of heterogeneous densities, an attempt to split the dataset and refine
the outlierness markers will be made.
The 'Python' version of 'deadwood' is available via 'PyPI'.
Author: Marek Gagolewski [aut, cre, cph]
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between deadwood versions 0.9.0-3 dated 2026-02-21 and 0.9.1 dated 2026-09-29
DESCRIPTION | 28 - MD5 | 36 - NAMESPACE | 6 NEWS | 11 R/RcppExports.R | 12 R/deadwood.R | 81 ++- R/mst.R | 3 man/deadwood-package.Rd | 5 man/deadwood.Rd | 63 +- man/kneedle.Rd | 8 man/mst.Rd | 3 src/RcppDeadwood.cpp | 40 - src/RcppExports.cpp | 10 src/RcppOldmst.cpp | 2 src/c_auxiliary.h |only src/c_common.h | 5 src/c_deadwood.h | 1111 ++++++++++++++++------------------------------ src/c_kneedle.h | 39 - src/c_mst_cluster_sizes.h |only src/c_mst_helpers.h |only src/c_mst_label_imputer.h |only 21 files changed, 615 insertions(+), 848 deletions(-)
More information about autoslider.trade at CRAN
Permanent link
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.2.4 dated 2026-08-03 and 1.3.0 dated 2026-09-29
renv-1.2.4/renv/inst/repos/src/contrib/renv_1.2.4.tar.gz |only renv-1.3.0/renv/DESCRIPTION | 11 renv-1.3.0/renv/MD5 | 142 ++-- renv-1.3.0/renv/NEWS.md | 240 +++++++ renv-1.3.0/renv/R/available-packages.R | 157 ++-- renv-1.3.0/renv/R/bootstrap.R | 13 renv-1.3.0/renv/R/dependencies.R | 96 ++ renv-1.3.0/renv/R/description.R | 2 renv-1.3.0/renv/R/download.R | 19 renv-1.3.0/renv/R/ext.R | 24 renv-1.3.0/renv/R/git.R | 199 +++++ renv-1.3.0/renv/R/graph.R | 347 ++++++++-- renv-1.3.0/renv/R/hydrate.R | 15 renv-1.3.0/renv/R/index.R | 11 renv-1.3.0/renv/R/install.R | 23 renv-1.3.0/renv/R/load.R | 19 renv-1.3.0/renv/R/lock.R | 98 ++ renv-1.3.0/renv/R/lockfile-diff.R | 10 renv-1.3.0/renv/R/namespace.R | 26 renv-1.3.0/renv/R/p3m.R | 32 renv-1.3.0/renv/R/parallel.R | 4 renv-1.3.0/renv/R/paths.R | 5 renv-1.3.0/renv/R/platform.R | 4 renv-1.3.0/renv/R/ppm.R | 53 - renv-1.3.0/renv/R/project.R | 42 + renv-1.3.0/renv/R/record.R | 24 renv-1.3.0/renv/R/records.R | 61 + renv-1.3.0/renv/R/remotes.R | 92 ++ renv-1.3.0/renv/R/renvignore.R | 29 renv-1.3.0/renv/R/restore.R | 68 +- renv-1.3.0/renv/R/retrieve.R | 372 +++++++++- renv-1.3.0/renv/R/scope.R | 9 renv-1.3.0/renv/R/snapshot.R | 27 renv-1.3.0/renv/R/sysreqs.R | 28 renv-1.3.0/renv/R/tests.R | 2 renv-1.3.0/renv/R/update.R | 137 ++-- renv-1.3.0/renv/R/version.R | 27 renv-1.3.0/renv/README.md | 2 renv-1.3.0/renv/inst/repos/src/contrib/PACKAGES | 9 renv-1.3.0/renv/inst/repos/src/contrib/PACKAGES.gz |binary renv-1.3.0/renv/inst/repos/src/contrib/PACKAGES.rds |binary renv-1.3.0/renv/inst/repos/src/contrib/renv_1.3.0.tar.gz |only renv-1.3.0/renv/inst/resources/activate.R | 13 renv-1.3.0/renv/man/paths.Rd | 5 renv-1.3.0/renv/tests/testthat/_snaps/dependencies.md | 26 renv-1.3.0/renv/tests/testthat/_snaps/snapshot.md | 14 renv-1.3.0/renv/tests/testthat/helper-child.R |only renv-1.3.0/renv/tests/testthat/helper-git.R |only renv-1.3.0/renv/tests/testthat/helper-setup.R | 45 + renv-1.3.0/renv/tests/testthat/test-available-packages.R | 378 +++++++++++ renv-1.3.0/renv/tests/testthat/test-bootstrap.R | 45 + renv-1.3.0/renv/tests/testthat/test-dependencies.R | 204 ++++++ renv-1.3.0/renv/tests/testthat/test-description.R | 11 renv-1.3.0/renv/tests/testthat/test-ffi.R | 22 renv-1.3.0/renv/tests/testthat/test-graph.R | 490 ++++++++++++++ renv-1.3.0/renv/tests/testthat/test-hydrate.R | 54 + renv-1.3.0/renv/tests/testthat/test-index.R | 30 renv-1.3.0/renv/tests/testthat/test-install-staging.R |only renv-1.3.0/renv/tests/testthat/test-install.R | 59 + renv-1.3.0/renv/tests/testthat/test-load.R | 88 ++ renv-1.3.0/renv/tests/testthat/test-lock.R | 152 ++++ renv-1.3.0/renv/tests/testthat/test-namespace.R |only renv-1.3.0/renv/tests/testthat/test-ppm.R | 190 +++++ renv-1.3.0/renv/tests/testthat/test-record.R | 9 renv-1.3.0/renv/tests/testthat/test-records.R | 101 ++ renv-1.3.0/renv/tests/testthat/test-remotes.R | 510 +++++++++++++++ renv-1.3.0/renv/tests/testthat/test-renvignore.R | 25 renv-1.3.0/renv/tests/testthat/test-restore.R | 152 +++- renv-1.3.0/renv/tests/testthat/test-retrieve.R | 351 ++++++++++ renv-1.3.0/renv/tests/testthat/test-snapshot.R | 33 renv-1.3.0/renv/tests/testthat/test-status.R | 10 renv-1.3.0/renv/tests/testthat/test-sysreqs.R | 19 renv-1.3.0/renv/tests/testthat/test-update.R | 10 renv-1.3.0/renv/tests/testthat/test-utils.R | 40 + renv-1.3.0/renv/tests/testthat/test-version.R | 26 75 files changed, 5062 insertions(+), 529 deletions(-)
Title: Fast Survival Analysis and Simulation for Clinical Trials
Description: Provides fast alternatives to standard survival analysis functions
in the 'survival' package, together with tools for time-to-event trial
simulation and sequential analysis. The estimation and testing functions
cover a single-time-point Kaplan-Meier estimator (survfit_fast()), log-rank
tests including weighted and stratified variants (survdiff_fast()), a
closed-form hazard ratio estimator based on the Pike-Halley Estimator method
(coxph_fast()), restricted mean survival time (rmst_fast()), window mean
survival time (wmst_fast()), milestone survival comparison
(milestone_fast()), median survival time (medsurv_fast()), the max-combo
test (maxcombo_fast()), the robust modestly-weighted log-rank test
(rmw_fast()), the weighted Kaplan-Meier (Pepe-Fleming) test (wkm_fast()),
the average hazard with survival weight (ahsw_fast()), and the
Kalbfleisch-Prentice average hazard ratio (ahr_fast()). The simulation
layer generates individual patient data (simdata_fast()), performs interim
or sequenti [...truncated...]
Author: Gosuke Homma [aut, cre]
Maintainer: Gosuke Homma <my.name.is.gosuke@gmail.com>
Diff between FastSurvival versions 0.2.0 dated 2026-07-27 and 1.0.0 dated 2026-09-29
DESCRIPTION | 6 MD5 | 206 +++--- NAMESPACE | 98 +- NEWS.md | 129 +++ R/FastSurvival-package.R | 9 R/RcppExports.R | 39 + R/ahr_fast.R | 18 R/ahsw_fast.R | 17 R/analysis_fast.R | 122 ++- R/check_output_size.R |only R/check_tau_follow_up.R |only R/check_time_event.R |only R/coxph_fast.R | 99 ++ R/gen_scenario_fast.R | 464 ++++++------- R/km_step_median.R |only R/maxcombo_fast.R | 7 R/medsurv_fast.R | 505 +++++++------- R/milestone_fast.R | 402 +++++------ R/pairwise_fast.R | 41 - R/plot.kmcurve_fast.R | 766 +++++++++++----------- R/plot.scenario_fast.R | 298 ++++---- R/print.ahr_fast.R | 110 +-- R/print.ahsw_fast.R | 154 ++-- R/print.coxph_fast.R | 190 ++--- R/print.kmcurve_fast.R | 7 R/print.maxcombo_fast.R | 150 ++-- R/print.milestone_fast.R | 166 ++-- R/print.rmst_fast.R | 208 +++--- R/print.rmw_fast.R | 146 ++-- R/print.simsummary_fast.R | 326 ++++----- R/print.survdiff_fast.R | 255 +++---- R/print.survfit_fast.R | 132 +-- R/rmst_fast.R | 10 R/rmw_fast.R | 3 R/simdata_fast.R | 225 ++++-- R/simsummary_fast.R | 51 + R/split_total.R |only R/step_extend.R |only R/survdiff_fast.R | 20 R/survfit_fast.R | 36 - R/two_group_indicator.R |only R/wkm_fast.R | 324 ++++----- R/wmst_fast.R | 392 +++++------ README.md | 981 ++++++++++++++-------------- inst/WORDLIST | 293 ++++---- inst/doc/correlated-pfs-os-gsd.html | 16 inst/doc/group-sequential-design.Rmd | 480 +++++++------- inst/doc/mrct-regional-consistency.Rmd | 640 +++++++++--------- inst/doc/mrct-regional-consistency.html | 10 inst/doc/speed-comparison.Rmd | 576 ++++++++-------- inst/doc/speed-comparison.html | 20 inst/doc/validation.R | 17 inst/doc/validation.Rmd | 1060 +++++++++++++++---------------- inst/doc/validation.html | 394 ++++++----- man/FastSurvival-package.Rd | 9 man/ahr_fast.Rd | 14 man/ahsw_fast.Rd | 9 man/analysis_fast.Rd | 57 - man/coxph_fast.Rd | 36 - man/maxcombo_fast.Rd | 3 man/medsurv_fast.Rd | 8 man/milestone_fast.Rd | 4 man/pairwise_fast.Rd | 5 man/pihe_core_strat.Rd |only man/print.kmcurve_fast.Rd | 3 man/print.simsummary_fast.Rd | 4 man/rmst_fast.Rd | 4 man/simdata_fast.Rd | 56 + man/simsummary_fast.Rd | 21 man/stratified_weighted_logrank_core.Rd | 5 man/survdiff_fast.Rd | 8 man/survfit_fast.Rd | 9 man/weighted_logrank_core.Rd | 5 man/wmst_fast.Rd | 4 src/RcppExports.cpp | 15 src/analysis_loop_core.cpp | 52 - src/combo_logrank_core.cpp | 6 src/logrank_core.cpp | 9 src/medsurv_core.cpp | 26 src/milestone_core.cpp | 6 src/pihe_core.cpp | 195 ++++- src/rmw_core.cpp | 5 src/simdata_core_full.cpp | 21 src/stratified_logrank_core.cpp | 9 src/stratified_weighted_logrank_core.cpp | 12 src/weighted_logrank_core.cpp | 17 tests/testthat/test-ahr_fast.R | 575 ++++++++-------- tests/testthat/test-ahsw_fast.R | 432 ++++++------ tests/testthat/test-analysis_fast.R | 735 +++++++++++---------- tests/testthat/test-coxph_fast.R | 342 ++++++---- tests/testthat/test-kmcurve_fast.R | 26 tests/testthat/test-maxcombo_fast.R | 612 ++++++++--------- tests/testthat/test-medsurv_fast.R | 44 - tests/testthat/test-milestone_fast.R | 376 +++++----- tests/testthat/test-pairwise_fast.R | 39 + tests/testthat/test-rmst_fast.R | 20 tests/testthat/test-simdata_fast.R | 712 ++++++++++++-------- tests/testthat/test-simdata_fast_id.R | 458 ++++++------- tests/testthat/test-simdata_fast_karm.R | 6 tests/testthat/test-simsummary_fast.R | 758 +++++++++++----------- tests/testthat/test-survdiff_fast.R | 38 + tests/testthat/test-survfit_fast.R | 231 +++--- tests/testthat/test-wkm_fast.R | 28 tests/testthat/test-wmst_fast.R | 86 +- vignettes/group-sequential-design.Rmd | 480 +++++++------- vignettes/mrct-regional-consistency.Rmd | 640 +++++++++--------- vignettes/speed-comparison.Rmd | 576 ++++++++-------- vignettes/validation.Rmd | 1060 +++++++++++++++---------------- 108 files changed, 10496 insertions(+), 9033 deletions(-)
Title: Design-Indexed Location-Scale Meta-Analysis
Description: Fits constrained and unrestricted meta-analytic location-scale
models in which residual between-study heterogeneity is modeled as an
exponential function of a prespecified design-robustness score. The
package supports maximum-likelihood (ML) and restricted
maximum-likelihood (REML) estimation, location moderators, the
conventional random-effects model as a nested special case, exact
estimation at the nonnegative scale-gradient boundary, design-indexed
heterogeneity summaries, scale-attenuation measures, prediction of
fitted heterogeneity, leave-one-out influence diagnostics, and
parametric-bootstrap inference for the scale gradient. A grouped scale
diagnostic checks whether a monotone curve misses an interior peak or
trough. Because the
scale-gradient null lies on the boundary of the constrained parameter
space, standard chi-square likelihood-ratio references do not apply
(Self and Liang, 1987, <doi:10.1080/01621459.1987.10478472>). The
general location-scale parent model is desc [...truncated...]
Author: Subir Hait [aut, cre, cph]
Maintainer: Subir Hait <haitsubi@msu.edu>
Diff between drmeta versions 0.2.2 dated 2026-08-24 and 0.2.3 dated 2026-09-29
DESCRIPTION | 17 LICENSE | 4 MD5 | 59 +-- NAMESPACE | 46 +- NEWS.md | 239 +++++++----- R/bootstrap.R | 353 +++++++++--------- R/diagnostics.R | 295 ++++++++------- R/drmeta.R | 546 ++++++++++++++--------------- R/plot.R | 94 ++-- R/score.R | 234 ++++++------ R/shape.R |only README.md | 172 ++++----- build |only inst/doc |only inst/validation |only man/dr_from_design.Rd | 90 ++-- man/dr_heterogeneity.Rd | 58 +-- man/dr_loo.Rd | 68 +-- man/dr_plot_vfun.Rd | 94 ++-- man/dr_scale_attenuation.Rd | 70 +-- man/dr_scale_predict.Rd | 68 +-- man/dr_score.Rd | 80 ++-- man/dr_shape_check.Rd |only man/drmeta-methods.Rd | 114 +++--- man/drmeta.Rd | 132 +++---- man/drmeta_bootstrap_gamma.Rd | 152 ++++---- man/normalize_01.Rd | 46 +- man/print.dr_shape_check.Rd |only man/print.drmeta_bootstrap_gamma.Rd | 42 +- tests/testthat.R | 6 tests/testthat/test-core.R | 221 ++++++----- tests/testthat/test-numerical-validation.R |only vignettes |only 33 files changed, 1696 insertions(+), 1604 deletions(-)
More information about CrossDomainAdjust at CRAN
Permanent link
Title: Wrangling 'JDemetra+ 3.x' Workspaces
Description: R Interface to 'JDemetra+
3.x'(<https://github.com/jdemetra>). It offers several functions to
manipulate 'JDemetra+' workspaces, which can be read by the software
and can store several seasonal adjusted series along with user-defined
calendars or regression variables.
Author: Jean Palate [aut],
Alain Quartier-la-Tente [aut] ,
Tanguy Barthelemy [aut, cre, art],
Anna Smyk [aut],
Eulalie Delaune [aut]
Maintainer: Tanguy Barthelemy <timeserieswithjdemetraandr@gmail.com>
Diff between rjd3workspace versions 3.8.0 dated 2026-07-17 and 3.9.0 dated 2026-09-29
rjd3workspace-3.8.0/rjd3workspace/inst/java/java-io-base-0.0.38.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/java-io-xml-0.0.38.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/java-io-xml-bind-0.0.38.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-sa-base-information-3.8.0.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-sa-base-information-3.8.1-SNAPSHOT.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-sa-base-workspace-3.8.0.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-sa-base-workspace-3.8.1-SNAPSHOT.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-toolkit-base-information-3.8.0.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-toolkit-base-information-3.8.1-SNAPSHOT.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-toolkit-base-workspace-3.8.0.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-toolkit-base-workspace-3.8.1-SNAPSHOT.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-toolkit-base-xml-3.8.0.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-toolkit-base-xml-3.8.1-SNAPSHOT.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-tramoseats-base-information-3.8.0.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-tramoseats-base-information-3.8.1-SNAPSHOT.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-tramoseats-base-workspace-3.8.0.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-tramoseats-base-workspace-3.8.1-SNAPSHOT.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-x13-base-information-3.8.0.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-x13-base-information-3.8.1-SNAPSHOT.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-x13-base-workspace-3.8.0.jar |only rjd3workspace-3.8.0/rjd3workspace/inst/java/jdplus-x13-base-workspace-3.8.1-SNAPSHOT.jar |only rjd3workspace-3.9.0/rjd3workspace/DESCRIPTION | 29 - rjd3workspace-3.9.0/rjd3workspace/MD5 | 95 +-- rjd3workspace-3.9.0/rjd3workspace/NAMESPACE | 61 +- rjd3workspace-3.9.0/rjd3workspace/NEWS.md | 43 + rjd3workspace-3.9.0/rjd3workspace/R/deprecated.R | 29 - rjd3workspace-3.9.0/rjd3workspace/R/saitem.R | 23 rjd3workspace-3.9.0/rjd3workspace/R/saprocessing.R | 28 - rjd3workspace-3.9.0/rjd3workspace/R/update_path.R | 9 rjd3workspace-3.9.0/rjd3workspace/R/utils.R | 30 + rjd3workspace-3.9.0/rjd3workspace/R/workspace.R | 248 ++++++---- rjd3workspace-3.9.0/rjd3workspace/R/zzz.R | 4 rjd3workspace-3.9.0/rjd3workspace/README.md | 8 rjd3workspace-3.9.0/rjd3workspace/inst/java/java-io-base-0.0.39.jar |only rjd3workspace-3.9.0/rjd3workspace/inst/java/java-io-xml-0.0.39.jar |only rjd3workspace-3.9.0/rjd3workspace/inst/java/java-io-xml-bind-0.0.39.jar |only rjd3workspace-3.9.0/rjd3workspace/inst/java/jdplus-sa-base-information-3.9.0.jar |only rjd3workspace-3.9.0/rjd3workspace/inst/java/jdplus-sa-base-workspace-3.9.0.jar |only rjd3workspace-3.9.0/rjd3workspace/inst/java/jdplus-toolkit-base-information-3.9.0.jar |only rjd3workspace-3.9.0/rjd3workspace/inst/java/jdplus-toolkit-base-workspace-3.9.0.jar |only rjd3workspace-3.9.0/rjd3workspace/inst/java/jdplus-toolkit-base-xml-3.9.0.jar |only rjd3workspace-3.9.0/rjd3workspace/inst/java/jdplus-tramoseats-base-information-3.9.0.jar |only rjd3workspace-3.9.0/rjd3workspace/inst/java/jdplus-tramoseats-base-workspace-3.9.0.jar |only rjd3workspace-3.9.0/rjd3workspace/inst/java/jdplus-x13-base-information-3.9.0.jar |only rjd3workspace-3.9.0/rjd3workspace/inst/java/jdplus-x13-base-workspace-3.9.0.jar |only rjd3workspace-3.9.0/rjd3workspace/man/add_calendar.Rd | 32 - rjd3workspace-3.9.0/rjd3workspace/man/add_variables.Rd | 58 +- rjd3workspace-3.9.0/rjd3workspace/man/deprecated-rjd3workspace.Rd | 12 rjd3workspace-3.9.0/rjd3workspace/man/get-results.Rd | 12 rjd3workspace-3.9.0/rjd3workspace/man/get_context.Rd | 3 rjd3workspace-3.9.0/rjd3workspace/man/get_metadata.Rd | 3 rjd3workspace-3.9.0/rjd3workspace/man/jws_compute.Rd | 3 rjd3workspace-3.9.0/rjd3workspace/man/jws_new.Rd | 7 rjd3workspace-3.9.0/rjd3workspace/man/jws_open.Rd | 8 rjd3workspace-3.9.0/rjd3workspace/man/jws_sap.Rd | 8 rjd3workspace-3.9.0/rjd3workspace/man/make_copy.Rd | 4 rjd3workspace-3.9.0/rjd3workspace/man/read_sai.Rd | 9 rjd3workspace-3.9.0/rjd3workspace/man/read_workspace.Rd | 10 rjd3workspace-3.9.0/rjd3workspace/man/refresh.Rd | 35 - rjd3workspace-3.9.0/rjd3workspace/man/rjd3workspace-package.Rd | 1 rjd3workspace-3.9.0/rjd3workspace/man/save_workspace.Rd | 12 rjd3workspace-3.9.0/rjd3workspace/man/set_context.Rd | 10 rjd3workspace-3.9.0/rjd3workspace/man/write_calendars.Rd | 13 rjd3workspace-3.9.0/rjd3workspace/man/ws_sap_count.Rd | 3 rjd3workspace-3.9.0/rjd3workspace/tests/testthat/test-utils.R |only rjd3workspace-3.9.0/rjd3workspace/tests/testthat/test-workspace.R |only 66 files changed, 536 insertions(+), 314 deletions(-)
Title: Secure and Intuitive Access to 'Plug' Interface
Description: Provides a secure and user-friendly interface to interact with the
'Plug' <https://plugbytpf.com.br> 'API'. It enables developers to store and
manage credentials and tokens securely using the 'keyring' package, and to
retrieve data from 'API' endpoints with the 'httr2' package, using 'SQL'
queries built safely from templates. Designed for simplicity and security,
the package facilitates seamless integration with the 'Plug' ecosystem.
Author: Andre Leite [aut, cre],
Felipe Ferreira [aut],
Hugo Vasconcelos [aut],
Diogo Bezerra [aut],
Roger Azevedo [aut],
Marcos Wasiliew [aut] ,
Julia Nascimento Barreto [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between plug versions 0.1.0 dated 2025-01-13 and 0.2.0 dated 2026-09-29
DESCRIPTION | 40 +++- MD5 | 29 ++- NAMESPACE | 1 NEWS.md |only R/plug.R | 383 +++++++++++++++++++++++++++--------------- R/utils.R |only README.md | 72 +++++-- man/plug_clear_credentials.Rd |only man/plug_download_base.Rd | 10 - man/plug_execute_query.Rd | 34 +++ man/plug_get_valid_token.Rd | 9 man/plug_list_credentials.Rd | 5 man/plug_list_tokens.Rd | 2 man/plug_store_credentials.Rd | 8 tests |only 15 files changed, 408 insertions(+), 185 deletions(-)
Title: Dose-Response Analysis Using R
Description: Analysis of various types of dose-response data is enabled through a suite of flexible and versatile model fitting and after-fitting functions. A wide range of dose-response models is available.
Author: Christian Ritz [aut, cre] ,
Signe M. Jensen [ctb] ,
Daniel Gerhard [ctb] ,
Jens C. Streibig [aut]
Maintainer: Christian Ritz <drc@ritz.lv>
Diff between drc versions 3.0-1 dated 2016-08-29 and 4.0-0 dated 2026-09-29
drc-3.0-1/drc/LICENCE |only drc-3.0-1/drc/NEWS |only drc-3.0-1/drc/R/ED.lin.R |only drc-3.0-1/drc/R/MAX.R |only drc-3.0-1/drc/R/NEC.R |only drc-3.0-1/drc/R/PR.R |only drc-3.0-1/drc/R/backfit.R |only drc-3.0-1/drc/R/baro5.R |only drc-3.0-1/drc/R/comped.R |only drc-3.0-1/drc/R/drmc.R |only drc-3.0-1/drc/R/fct2list.R |only drc-3.0-1/drc/R/findbe.R |only drc-3.0-1/drc/R/findcd.R |only drc-3.0-1/drc/R/gammadr.R |only drc-3.0-1/drc/R/gaussian.R |only drc-3.0-1/drc/R/gompertz.R |only drc-3.0-1/drc/R/hewlett.R |only drc-3.0-1/drc/R/iband.R |only drc-3.0-1/drc/R/idrm.R |only drc-3.0-1/drc/R/isobole.R |only drc-3.0-1/drc/R/lnormal.R |only drc-3.0-1/drc/R/logistic.R |only drc-3.0-1/drc/R/mixture.R |only drc-3.0-1/drc/R/mrdrm.R |only drc-3.0-1/drc/R/mselect.R |only drc-3.0-1/drc/R/multi2.R |only drc-3.0-1/drc/R/rdrm.R |only drc-3.0-1/drc/R/relpot.R |only drc-3.0-1/drc/R/sandwich.R |only drc-3.0-1/drc/R/simFct.R |only drc-3.0-1/drc/R/twophase.R |only drc-3.0-1/drc/R/ursa.R |only drc-3.0-1/drc/R/voelund.R |only drc-3.0-1/drc/R/weibull1.R |only drc-3.0-1/drc/R/weibull2.R |only drc-3.0-1/drc/R/xlogx.R |only drc-3.0-1/drc/inst/CITATION |only drc-3.0-1/drc/man/barley.Rd |only drc-3.0-1/drc/tests/test1.R |only drc-3.0-1/drc/tests/test2.R |only drc-4.0-0/drc/DESCRIPTION | 46 drc-4.0-0/drc/MD5 | 179 - drc-4.0-0/drc/NAMESPACE | 185 - drc-4.0-0/drc/NEWS.md |only drc-4.0-0/drc/R/ED.drc.R | 405 +-- drc-4.0-0/drc/R/EDhelper.R | 62 drc-4.0-0/drc/R/EDinvreg.R |only drc-4.0-0/drc/R/absToRel.R | 18 drc-4.0-0/drc/R/anova.drc.R | 2 drc-4.0-0/drc/R/backfit.r |only drc-4.0-0/drc/R/baro5.r |only drc-4.0-0/drc/R/braincousens.R | 603 ++--- drc-4.0-0/drc/R/cedergreen.R | 36 drc-4.0-0/drc/R/comped.r |only drc-4.0-0/drc/R/confint.drc.R | 122 - drc-4.0-0/drc/R/drm.R | 3538 +++++++++++++++--------------- drc-4.0-0/drc/R/drmEMeventtime.r | 136 - drc-4.0-0/drc/R/drmEMls.R | 191 - drc-4.0-0/drc/R/drmEMnegbin.R |only drc-4.0-0/drc/R/drmEMssd.R |only drc-4.0-0/drc/R/drmc.r |only drc-4.0-0/drc/R/edlin.R |only drc-4.0-0/drc/R/fct2list.r |only drc-4.0-0/drc/R/findbe.r |only drc-4.0-0/drc/R/findcd.r |only drc-4.0-0/drc/R/fplogistic.R | 344 +- drc-4.0-0/drc/R/gammadr.r |only drc-4.0-0/drc/R/gaussian.r |only drc-4.0-0/drc/R/gompertz.r |only drc-4.0-0/drc/R/hewlett.r |only drc-4.0-0/drc/R/iband.r |only drc-4.0-0/drc/R/idrm.r |only drc-4.0-0/drc/R/isobole.r |only drc-4.0-0/drc/R/llogistic.R | 58 drc-4.0-0/drc/R/lnormal.r |only drc-4.0-0/drc/R/logistic.r |only drc-4.0-0/drc/R/maED.R | 4 drc-4.0-0/drc/R/max.r |only drc-4.0-0/drc/R/mixture.r |only drc-4.0-0/drc/R/mselect.r |only drc-4.0-0/drc/R/multi2.r |only drc-4.0-0/drc/R/nec.r |only drc-4.0-0/drc/R/plot.drc.R | 33 drc-4.0-0/drc/R/pr.r |only drc-4.0-0/drc/R/predict.drc.R | 101 drc-4.0-0/drc/R/print.summary.drc.R | 2 drc-4.0-0/drc/R/rdrm.r |only drc-4.0-0/drc/R/relpot.r |only drc-4.0-0/drc/R/rse.R | 47 drc-4.0-0/drc/R/sandwich.r |only drc-4.0-0/drc/R/twophase.r |only drc-4.0-0/drc/R/ucedergreen.R | 43 drc-4.0-0/drc/R/ursa.r |only drc-4.0-0/drc/R/voelund.r |only drc-4.0-0/drc/R/weibull1.r |only drc-4.0-0/drc/R/weibull2.r |only drc-4.0-0/drc/R/xlogx.r |only drc-4.0-0/drc/inst/citation |only drc-4.0-0/drc/man/CIcompX.Rd | 215 - drc-4.0-0/drc/man/CRS.4a.Rd | 13 drc-4.0-0/drc/man/CRS.5a.Rd | 14 drc-4.0-0/drc/man/ED.drc.Rd | 247 +- drc-4.0-0/drc/man/EDcomp.Rd | 14 drc-4.0-0/drc/man/LL.4.Rd | 13 drc-4.0-0/drc/man/W2.Rd | 4 drc-4.0-0/drc/man/W3.Rd | 10 drc-4.0-0/drc/man/W4.Rd | 10 drc-4.0-0/drc/man/algae.Rd | 4 drc-4.0-0/drc/man/anova.drc.Rd | 21 drc-4.0-0/drc/man/baro5.Rd | 107 drc-4.0-0/drc/man/bread.drc.Rd | 10 drc-4.0-0/drc/man/cedergreen.Rd | 61 drc-4.0-0/drc/man/deguelin.Rd | 19 drc-4.0-0/drc/man/drm.Rd | 248 +- drc-4.0-0/drc/man/drmc.Rd | 11 drc-4.0-0/drc/man/fplogistic.Rd | 2 drc-4.0-0/drc/man/gompertz.Rd | 2 drc-4.0-0/drc/man/hatvalues.drc.Rd | 4 drc-4.0-0/drc/man/isobole.Rd | 112 drc-4.0-0/drc/man/leaflength.Rd |only drc-4.0-0/drc/man/llogistic.Rd | 8 drc-4.0-0/drc/man/lnormal.Rd | 207 - drc-4.0-0/drc/man/mixture.Rd | 102 drc-4.0-0/drc/man/modelFit.Rd | 7 drc-4.0-0/drc/man/predict.drc.Rd | 50 drc-4.0-0/drc/man/summary.drc.Rd | 72 drc-4.0-0/drc/man/weibull1.Rd | 14 drc-4.0-0/drc/tests/seedGerminationMods.R |only drc-4.0-0/drc/tests/test1.r |only drc-4.0-0/drc/tests/test2.r |only drc-4.0-0/drc/tests/test3.R | 13 131 files changed, 4020 insertions(+), 3749 deletions(-)
Title: Slide Automation for Tables, Listings and Figures
Description: The normal process of creating clinical study slides is that
a statistician manually type in the numbers from outputs and a
separate statistician to double check the typed in numbers. This
process is time consuming, resource intensive, and error prone.
Automatic slide generation is a solution to address these issues. It
reduces the amount of work and the required time when creating slides,
and reduces the risk of errors from manually typing or copying numbers
from the output to slides. It also helps users to avoid unnecessary
stress when creating large amounts of slide decks in a short time
window.
Author: Joe Zhu [cre, aut] ,
Heng Wang [aut],
Yinqi Zhao [aut],
Bo Ci [aut],
Liming Li [aut],
Laura Wang [ctb],
Xiaoli Duan [aut],
Stefan Pascal Thoma [aut],
Thomas Neitmann [ctb],
Miles Almond [aut],
Mahdi About [ctb],
Kai Lim [ctb],
Nolan Steed [ctb],
Daol [...truncated...]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between autoslider.core versions 0.3.3 dated 2026-08-29 and 0.3.4 dated 2026-09-29
DESCRIPTION | 34 MD5 | 350 +- NAMESPACE | 162 - NEWS.md | 39 R/ai.R | 235 - R/ai_story.R |only R/appendix.R | 596 ++-- R/assert.R | 112 R/cached_data.R | 205 - R/decorate.R | 53 R/ft_formats.R | 367 +- R/g_eg_slide.R | 94 R/g_lb_slide.R | 122 R/g_mean_general.R | 114 R/g_vs_slide.R | 92 R/generate_output.R | 10 R/helper_functions.R | 162 - R/l_ae_slide.R | 194 - R/l_vs_slide.R |only R/null_report.R | 84 R/package.R | 7 R/save_output.R | 24 R/spec.R | 385 +-- R/t_ae_pt_diff_slide.R | 426 +-- R/t_ae_pt_slide.R | 116 R/t_ae_pt_soc_diff_slide.R | 96 R/t_ae_pt_soc_slide.R | 116 R/t_ae_slide.R | 234 - R/t_ae_summary_slide.R | 498 +-- R/t_aesi_slide.R | 350 +- R/t_dd_slide.R | 128 - R/t_dm_slide.R | 158 - R/t_dor_slide.R | 186 - R/t_ds_slide.R | 168 - R/t_mh_slide.R |only R/tlg_template.R | 322 +- R/to_ft_funs.R | 80 R/to_slides.R | 249 + R/tokens.R |only R/util.R | 1268 +++++----- data/eg_admh.rda |only inst/WORDLIST | 17 inst/doc/adding_templates.html | 4 inst/doc/autoslideR.R | 22 inst/doc/autoslideR.Rmd | 35 inst/doc/autoslideR.html | 783 +++--- inst/doc/downstream.Rmd | 147 - inst/doc/downstream.html | 1 inst/doc/generate_placeholder_slides.R | 23 inst/doc/generate_placeholder_slides.Rmd | 246 + inst/doc/generate_placeholder_slides.html | 36 inst/doc/mcp_server.html | 4 inst/doc/opensource.R | 10 inst/doc/opensource.Rmd | 276 +- inst/doc/opensource.html | 10 inst/doc/tlg_templates.R | 17 inst/doc/tlg_templates.Rmd | 516 ++-- inst/doc/tlg_templates.html | 18 inst/doc/use_LLM.R | 37 inst/doc/use_LLM.Rmd | 356 +- inst/doc/use_LLM.html | 96 inst/doc/using_formats.R | 16 inst/doc/using_formats.Rmd | 222 - inst/doc/using_formats.html | 20 inst/filters.yml | 351 +- inst/mcp/autoslider_mcp_server.R | 93 inst/metadata.yml |only inst/spec.yml | 804 +++--- inst/templates/g_eg_slide.R | 94 inst/templates/g_lb_slide.R | 122 inst/templates/g_mean_general.R | 114 inst/templates/g_vs_slide.R | 92 inst/templates/l_ae_slide.R | 194 - inst/templates/t_ae_pt_diff_slide.R | 426 +-- inst/templates/t_ae_pt_slide.R | 116 inst/templates/t_ae_pt_soc_diff_slide.R | 96 inst/templates/t_ae_pt_soc_slide.R | 116 inst/templates/t_ae_slide.R | 234 - inst/templates/t_ae_summary_slide.R | 498 +-- inst/templates/t_aesi_slide.R | 350 +- inst/templates/t_dd_slide.R | 128 - inst/templates/t_dm_slide.R | 158 - inst/templates/t_dor_slide.R | 186 - inst/templates/t_ds_slide.R | 168 - inst/templates/t_mh_slide.R |only man/add_ai_story.Rd |only man/add_story_slides.Rd |only man/append_all_slides.Rd | 119 man/append_section_header_slides.Rd | 106 man/append_title_slides.Rd | 102 man/apply_tokens.Rd |only man/autoslider.core-package.Rd | 4 man/autoslider_format.Rd | 173 - man/decorate.VTableTree.Rd | 13 man/decorate.ggplot.Rd | 13 man/decorate.grob.Rd | 13 man/decorate.gtsummary.Rd | 13 man/decorate.list.Rd | 13 man/decorate.listing_df.Rd | 13 man/eg_admh.Rd |only man/filter_spec.Rd | 98 man/g_eg_slide.Rd | 112 man/g_lb_slide.Rd | 136 - man/g_mean_general.Rd | 118 man/g_vs_slide.Rd | 112 man/generate_output.Rd | 104 man/generate_outputs.Rd | 6 man/generate_slides.Rd | 229 + man/get_ai_story.Rd |only man/l_vs_slide.Rd |only man/null_report.Rd | 98 man/read_metadata.Rd |only man/read_spec.Rd | 88 man/save_output.Rd | 148 - man/save_outputs.Rd | 124 man/slides_from_rds.Rd | 108 man/slides_preview.Rd | 46 man/t_ae_pt_diff_slide.Rd | 102 man/t_ae_pt_slide.Rd | 122 man/t_ae_pt_soc_diff_slide.Rd | 102 man/t_ae_pt_soc_slide.Rd | 114 man/t_ae_slide.Rd | 96 man/t_ae_summ_slide.Rd | 148 - man/t_aesi_slide.Rd | 82 man/t_dd_slide.Rd | 76 man/t_dor_slide.Rd | 76 man/t_ds_slide.Rd | 74 man/t_mh_slide.Rd |only man/table_to_slide.Rd | 78 man/with_font_sizes.Rd |only tests/testthat/_snaps/data_snapshot.md | 29 tests/testthat/_snaps/filter_spec-verbose.md | 152 - tests/testthat/_snaps/g_mean_slides/g_eg_test.new.svg | 350 +- tests/testthat/_snaps/g_mean_slides/g_lb_chg_test.new.svg | 302 +- tests/testthat/_snaps/g_mean_slides/g_lb_test.new.svg | 298 +- tests/testthat/_snaps/g_mean_slides/g_mean_general_test.new.svg | 350 +- tests/testthat/_snaps/g_mean_slides/g_mean_nounit_test.new.svg | 350 +- tests/testthat/_snaps/g_mean_slides/g_vs_test.new.svg | 302 +- tests/testthat/_snaps/l_ae_slide.md | 2 tests/testthat/_snaps/l_vs_slide.md |only tests/testthat/_snaps/save_output.md | 4 tests/testthat/_snaps/t_ae_pt_diff_slide.md | 28 tests/testthat/_snaps/t_ae_pt_slide.md | 24 tests/testthat/_snaps/t_ae_pt_soc_diff_slide.md | 20 tests/testthat/_snaps/t_ae_slide.md | 6 tests/testthat/_snaps/t_ae_summary_slide.md | 10 tests/testthat/_snaps/t_aesi_slide.md | 6 tests/testthat/_snaps/t_dd_slide.md | 14 tests/testthat/_snaps/t_dm_slide.md | 20 tests/testthat/_snaps/t_dor_slide.md | 8 tests/testthat/_snaps/t_ds_slide.md | 16 tests/testthat/_snaps/t_mh_slide.md |only tests/testthat/setup-options.R | 26 tests/testthat/setup.R | 294 +- tests/testthat/srep_with_reduced_footnote.pptx |only tests/testthat/t_ae_slide_SE.rds |only tests/testthat/t_ds_slide_FAS.rds |binary tests/testthat/t_mh_slide_FAS.rds |only tests/testthat/test-ai-offline.R | 148 - tests/testthat/test-ai_story.R |only tests/testthat/test-appendix.R | 392 +-- tests/testthat/test-apply_tokens.R |only tests/testthat/test-data_snapshot.R | 22 tests/testthat/test-filter_spec-verbose.R | 38 tests/testthat/test-font-size.R |only tests/testthat/test-ft_format.R | 186 - tests/testthat/test-func_wrapper.R | 102 tests/testthat/test-g_mean_slides.R | 228 - tests/testthat/test-gtsummary.R | 47 tests/testthat/test-l_vs_slide.R |only tests/testthat/test-lpp-spec.R |only tests/testthat/test-output-table-format.R | 100 tests/testthat/test-read_metadata.R |only tests/testthat/test-save_output.R | 220 - tests/testthat/test-slides_preview.R | 14 tests/testthat/test-srep_outputs.R | 15 tests/testthat/test-t_ae_pt_diff_slide.R | 116 tests/testthat/test-t_ae_slide.R | 50 tests/testthat/test-t_dor_slide.R | 40 tests/testthat/test-t_mh_slide.R |only tests/testthat/test-template.R | 288 +- tests/testthat/test-util.R | 274 +- tests/testthat/test_ai.R | 218 - vignettes/autoslideR.Rmd | 35 vignettes/downstream.Rmd | 147 - vignettes/generate_placeholder_slides.Rmd | 246 + vignettes/opensource.Rmd | 276 +- vignettes/tlg_templates.Rmd | 516 ++-- vignettes/use_LLM.Rmd | 356 +- vignettes/using_formats.Rmd | 222 - 190 files changed, 13410 insertions(+), 11764 deletions(-)
More information about autoslider.core at CRAN
Permanent link
Title: Decomposing Global Feature Effects Based on Feature Interactions
Description: Implements the GADGET (Generalized Additive Decomposition of Global
EffecTs) algorithm for interpretable machine learning. The package
recursively partitions the feature space to minimize heterogeneity of
feature effects (e.g., Accumulated Local Effects or Partial Dependence),
producing a tree of regions where effects are more stable. It supports
both ALE and PD strategies, works with 'mlr3' learners and provides visualization of the interaction
tree and regional effect plots. The method is described in Herbinger, J.,
Wright, M. N., Nagler, T., Bischl, B., and Casalicchio, G. (2024),
"Decomposing Global Feature Effects Based on Feature Interactions"
<https://jmlr.org/papers/volume25/23-0699/23-0699.pdf>.
Author: Zizheng Zhang [aut, cre] ,
Coco Boegel [aut] ,
Giuseppe Casalicchio [aut] ,
Bernd Bischl [aut]
Maintainer: Zizheng Zhang <Zizheng.Zhang@stat.uni-muenchen.de>
Diff between xplaineff versions 0.1.0 dated 2026-09-14 and 0.1.1 dated 2026-09-29
xplaineff-0.1.0/xplaineff/man/aleStrategy.Rd |only xplaineff-0.1.0/xplaineff/man/gadgetTree.Rd |only xplaineff-0.1.0/xplaineff/man/pdStrategy.Rd |only xplaineff-0.1.0/xplaineff/man/pd_predict.Rd |only xplaineff-0.1.1/xplaineff/DESCRIPTION | 37 + xplaineff-0.1.1/xplaineff/MD5 | 218 +++---- xplaineff-0.1.1/xplaineff/NAMESPACE | 5 xplaineff-0.1.1/xplaineff/NEWS.md | 12 xplaineff-0.1.1/xplaineff/R/AleStrategy.R | 7 xplaineff-0.1.1/xplaineff/R/EffectStrategy.R | 5 xplaineff-0.1.1/xplaineff/R/GadgetTree.R | 6 xplaineff-0.1.1/xplaineff/R/Node.R | 30 - xplaineff-0.1.1/xplaineff/R/PdStrategy.R | 6 xplaineff-0.1.1/xplaineff/R/RcppExports.R | 16 xplaineff-0.1.1/xplaineff/R/calculate_ale.R | 18 xplaineff-0.1.1/xplaineff/R/calculate_ale_fast.R | 37 - xplaineff-0.1.1/xplaineff/R/calculate_ale_heterogeneity.R | 4 xplaineff-0.1.1/xplaineff/R/calculate_pd.R | 25 xplaineff-0.1.1/xplaineff/R/categorical_split_utils.R | 4 xplaineff-0.1.1/xplaineff/R/choose_operator.R | 1 xplaineff-0.1.1/xplaineff/R/convert_tree_to_list.R | 6 xplaineff-0.1.1/xplaineff/R/extract_split_info.R | 12 xplaineff-0.1.1/xplaineff/R/factor_to_numeric.R | 6 xplaineff-0.1.1/xplaineff/R/node_transform_ale.R | 4 xplaineff-0.1.1/xplaineff/R/order_categorical_levels.R | 11 xplaineff-0.1.1/xplaineff/R/plot_regional_pd.R | 17 xplaineff-0.1.1/xplaineff/R/plot_tree_ale.R | 7 xplaineff-0.1.1/xplaineff/R/plot_tree_pd.R | 5 xplaineff-0.1.1/xplaineff/R/plot_tree_structure.R | 4 xplaineff-0.1.1/xplaineff/R/plot_utils.R | 5 xplaineff-0.1.1/xplaineff/R/prepare_layout_data.R | 7 xplaineff-0.1.1/xplaineff/R/prepare_plot_data_ale.R | 9 xplaineff-0.1.1/xplaineff/R/prepare_split_data_pd.R | 3 xplaineff-0.1.1/xplaineff/R/prepare_split_data_utils.R | 17 xplaineff-0.1.1/xplaineff/R/search_best_split_ale.R | 2 xplaineff-0.1.1/xplaineff/R/xplaineff_internal.R | 6 xplaineff-0.1.1/xplaineff/R/xplaineff_package.R | 2 xplaineff-0.1.1/xplaineff/README.md | 16 xplaineff-0.1.1/xplaineff/build |only xplaineff-0.1.1/xplaineff/inst |only xplaineff-0.1.1/xplaineff/man/AleStrategy.Rd |only xplaineff-0.1.1/xplaineff/man/EffectStrategy.Rd | 19 xplaineff-0.1.1/xplaineff/man/GadgetTree.Rd |only xplaineff-0.1.1/xplaineff/man/Node.Rd | 206 ------- xplaineff-0.1.1/xplaineff/man/PdStrategy.Rd |only xplaineff-0.1.1/xplaineff/man/ale_categorical_feature.Rd | 20 xplaineff-0.1.1/xplaineff/man/ale_feature.Rd | 22 xplaineff-0.1.1/xplaineff/man/ale_numeric_feature.Rd | 22 xplaineff-0.1.1/xplaineff/man/build_ale_interval_stats.Rd | 8 xplaineff-0.1.1/xplaineff/man/build_ale_order_and_candidates.Rd | 12 xplaineff-0.1.1/xplaineff/man/build_node_title.Rd | 12 xplaineff-0.1.1/xplaineff/man/calculate_ale.Rd | 28 xplaineff-0.1.1/xplaineff/man/calculate_ale_fast.Rd | 18 xplaineff-0.1.1/xplaineff/man/calculate_ale_heterogeneity_cpp.Rd | 6 xplaineff-0.1.1/xplaineff/man/calculate_pd.Rd | 22 xplaineff-0.1.1/xplaineff/man/calculate_pd_matrix.Rd | 18 xplaineff-0.1.1/xplaineff/man/calculate_y_range.Rd | 12 xplaineff-0.1.1/xplaineff/man/calculate_y_range_impl.Rd | 10 xplaineff-0.1.1/xplaineff/man/choose_operator.Rd | 13 xplaineff-0.1.1/xplaineff/man/compute_ice.Rd | 28 xplaineff-0.1.1/xplaineff/man/compute_ice_cpp.Rd | 22 xplaineff-0.1.1/xplaineff/man/compute_ice_r.Rd | 24 xplaineff-0.1.1/xplaineff/man/compute_ice_row_major.Rd | 18 xplaineff-0.1.1/xplaineff/man/convert_tree_to_list.Rd | 8 xplaineff-0.1.1/xplaineff/man/create_plots_for_depth.Rd | 20 xplaineff-0.1.1/xplaineff/man/cumsum_na_as_zero.Rd | 6 xplaineff-0.1.1/xplaineff/man/ensure_factors.Rd | 8 xplaineff-0.1.1/xplaineff/man/extract_split_info.Rd | 8 xplaineff-0.1.1/xplaineff/man/factor_to_numeric.Rd | 12 xplaineff-0.1.1/xplaineff/man/find_node_by_id.Rd | 8 xplaineff-0.1.1/xplaineff/man/mean_center_ale.Rd | 10 xplaineff-0.1.1/xplaineff/man/mean_center_ice.Rd | 10 xplaineff-0.1.1/xplaineff/man/node_heterogeneity.Rd | 6 xplaineff-0.1.1/xplaineff/man/node_transform_ale.Rd | 11 xplaineff-0.1.1/xplaineff/man/order_categorical_levels.Rd | 24 xplaineff-0.1.1/xplaineff/man/pd_feature_grid.Rd | 8 xplaineff-0.1.1/xplaineff/man/pd_pack_ice_result.Rd | 12 xplaineff-0.1.1/xplaineff/man/pivot_effect_to_wide.Rd | 14 xplaineff-0.1.1/xplaineff/man/plot_regional_ale.Rd | 20 xplaineff-0.1.1/xplaineff/man/plot_regional_pd.Rd | 20 xplaineff-0.1.1/xplaineff/man/plot_tree_ale.Rd | 27 xplaineff-0.1.1/xplaineff/man/plot_tree_pd.Rd | 22 xplaineff-0.1.1/xplaineff/man/plot_tree_structure.Rd | 8 xplaineff-0.1.1/xplaineff/man/prepare_layout_data.Rd | 8 xplaineff-0.1.1/xplaineff/man/prepare_plot_data_ale.Rd | 16 xplaineff-0.1.1/xplaineff/man/prepare_split_data_ale.Rd | 36 - xplaineff-0.1.1/xplaineff/man/prepare_split_data_common.Rd | 14 xplaineff-0.1.1/xplaineff/man/prepare_split_data_pd.Rd | 14 xplaineff-0.1.1/xplaineff/man/preprocess_node_data.Rd | 10 xplaineff-0.1.1/xplaineff/man/resolve_split_features.Rd | 10 xplaineff-0.1.1/xplaineff/man/search_best_split_ale.Rd | 18 xplaineff-0.1.1/xplaineff/man/search_best_split_point_ale.Rd | 26 xplaineff-0.1.1/xplaineff/man/select_depths_to_render.Rd | 10 xplaineff-0.1.1/xplaineff/man/take_cols.Rd | 8 xplaineff-0.1.1/xplaineff/man/track_split_condition.Rd | 8 xplaineff-0.1.1/xplaineff/man/xplaineff-package.Rd | 54 - xplaineff-0.1.1/xplaineff/src/RcppExports.cpp | 54 - xplaineff-0.1.1/xplaineff/src/ale_fast.cpp | 284 ++++------ xplaineff-0.1.1/xplaineff/src/ale_sweep.cpp | 48 + xplaineff-0.1.1/xplaineff/src/node_heterogeneity.cpp | 2 xplaineff-0.1.1/xplaineff/src/pd_fast.cpp | 21 xplaineff-0.1.1/xplaineff/src/search_best_split.cpp | 128 ++-- xplaineff-0.1.1/xplaineff/tests/testthat/helper.R | 12 xplaineff-0.1.1/xplaineff/tests/testthat/test-ale.R | 27 xplaineff-0.1.1/xplaineff/tests/testthat/test-basic.R | 5 xplaineff-0.1.1/xplaineff/tests/testthat/test-gadgetTree.R | 47 - xplaineff-0.1.1/xplaineff/tests/testthat/test-pd.R | 68 -- xplaineff-0.1.1/xplaineff/tests/testthat/test-plotting.R | 32 - xplaineff-0.1.1/xplaineff/tests/testthat/test-prepare_plot_data_ale.R | 39 - xplaineff-0.1.1/xplaineff/tests/testthat/test-search_best_split.R | 10 xplaineff-0.1.1/xplaineff/tests/testthat/test-strategies.R | 128 +++- xplaineff-0.1.1/xplaineff/tests/testthat/test-utilities.R | 17 xplaineff-0.1.1/xplaineff/tests/testthat/test-xplaineff_internal.R | 6 xplaineff-0.1.1/xplaineff/vignettes |only 114 files changed, 1172 insertions(+), 1360 deletions(-)
Title: Qualitative Analysis with Large Language Models
Description: Tools for AI-assisted qualitative data coding using large language
models ('LLMs') via the 'ellmer' package, supporting providers including
'OpenAI', 'Anthropic', 'Google', 'Azure', and local models via 'Ollama'.
Provides a 'codebook'-based workflow for defining coding instructions and
applying them to texts, images, audio recordings, and other data. Includes built-in 'codebooks'
for common applications such as sentiment analysis and policy coding, and
functions for creating custom 'codebooks' for specific research questions.
Supports systematic replication across models and settings, computing
inter-coder reliability statistics including Krippendorff's alpha
(Krippendorff 2019, <doi:10.4135/9781071878781>) and Fleiss' kappa
(Fleiss 1971, <doi:10.1037/h0031619>), as well as gold-standard validation
metrics including accuracy, precision, recall, and F1 scores following
Sokolova and Lapalme (2009, <doi:10.1016/j.ipm.2009.03.002>). Provides audit
trail functionality for [...truncated...]
Author: Seraphine F. Maerz [aut, cre] ,
Kenneth Benoit [aut]
Maintainer: Seraphine F. Maerz <seraphine.maerz@unimelb.edu.au>
Diff between quallmer versions 0.4.0 dated 2026-05-06 and 0.5.0 dated 2026-09-29
quallmer-0.4.0/quallmer/R/alpha_u.R |only quallmer-0.4.0/quallmer/tests/testthat/_problems/test-qlm_code-298.R |only quallmer-0.4.0/quallmer/tests/testthat/_problems/test-qlm_code-299.R |only quallmer-0.4.0/quallmer/tests/testthat/_problems/test-qlm_segment-272.R |only quallmer-0.4.0/quallmer/tests/testthat/_problems/test-qlm_segment-273.R |only quallmer-0.5.0/quallmer/DESCRIPTION | 21 quallmer-0.5.0/quallmer/MD5 | 211 - quallmer-0.5.0/quallmer/NAMESPACE | 30 quallmer-0.5.0/quallmer/NEWS.md | 658 +++ quallmer-0.5.0/quallmer/R/accessors-doc.R | 5 quallmer-0.5.0/quallmer/R/accessors.R | 9 quallmer-0.5.0/quallmer/R/annotate.R | 14 quallmer-0.5.0/quallmer/R/as_qlm_coded.R | 44 quallmer-0.5.0/quallmer/R/cost.R |only quallmer-0.5.0/quallmer/R/credentials.R |only quallmer-0.5.0/quallmer/R/data.R | 2 quallmer-0.5.0/quallmer/R/ellmer_structured.R |only quallmer-0.5.0/quallmer/R/image_input.R |only quallmer-0.5.0/quallmer/R/input_content.R |only quallmer-0.5.0/quallmer/R/is_count.R |only 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Title: Exposure-Response Tools for GLM-Based Models
Description: Provides estimation tools for exposure-response models based on
glm(): model fitting and prediction, stepwise covariate modelling,
and simulation-based visual predictive checks. Tested
and supported for binomial, Poisson, Gaussian, and gamma families.
For a model-agnostic mini-language to visualise exposure-response
models (including those fitted with 'erglm'), see the companion
package 'erplots'.
Author: Danielle Navarro [aut, cre]
Maintainer: Danielle Navarro <djnavarro@protonmail.com>
Diff between erglm versions 0.1.1 dated 2026-08-08 and 0.2.0 dated 2026-09-29
DESCRIPTION | 14 +- MD5 | 58 ++++++----- NEWS.md | 25 ++++ R/er-methods.R | 12 +- R/erglm-core.R | 86 +++++++++------- R/erglm-data.R | 59 ++++++----- R/erglm-family.R | 2 R/erglm-scm.R | 186 +++++++++++++++++++++++++----------- R/erglm-simulate.R | 29 +++-- R/minicase.R |only R/minicondition.R |only R/minijoin.R |only R/miniseed.R |only R/minitable.R |only R/miniverb.R |only R/utils-helpers.R | 33 ++++-- README.md | 111 ++++++++++++--------- data/erglm_data.rda |binary inst/WORDLIST | 10 + man/erglm_data.Rd | 10 + man/erglm_fun.Rd | 29 ++--- man/erglm_model.Rd | 6 - man/erglm_predict.Rd | 16 +-- man/erglm_scm.Rd | 78 ++++++++++++--- man/erglm_term.Rd | 4 man/simulate.erglm_model.Rd | 12 +- tests/testthat/test-er-methods.R | 2 tests/testthat/test-erglm-core.R | 16 +-- tests/testthat/test-erglm-scm.R | 43 ++++++++ tests/testthat/test-minicase.R |only tests/testthat/test-minicondition.R |only tests/testthat/test-minijoin.R |only tests/testthat/test-miniseed.R |only tests/testthat/test-minitable.R |only tests/testthat/test-miniverb.R |only tools/pkgdown-postbuild.R | 26 ++--- 36 files changed, 579 insertions(+), 288 deletions(-)
Title: Korean National Assembly Data for Political Science Education
Description: Provides ready-to-use datasets from the Korean National Assembly
(assemblies 20 through 22, 2016-2026) for teaching quantitative methods in
political science. Includes legislator metadata, bill proposals, roll call
votes, asset declarations, and policy seminar records. Designed as a Korean
politics counterpart to packages like 'palmerpenguins', enabling students to
practice regression, panel data analysis, text analysis, and network analysis
with real legislative data. Roll call vote data and spatial voting models are
described in Poole and Rosenthal (1985) <doi:10.2307/2111172>. Legislative
data is sourced from the Korean National Assembly Open API.
Author: Kyusik Yang [aut, cre]
Maintainer: Kyusik Yang <kyusik.yang@nyu.edu>
Diff between assemblykor versions 0.1.3 dated 2026-07-28 and 0.1.4 dated 2026-09-29
DESCRIPTION | 6 MD5 | 110 NEWS.md | 142 R/data.R | 258 R/download.R | 144 R/zzz.R | 12 README.md | 46 data/bills.rda |binary data/legislators.rda |binary data/roll_calls.rda |binary data/seminars.rda |binary data/speeches.rda |binary data/votes.rda |binary data/wealth.rda |binary inst/CITATION | 2 inst/cheatsheet/assemblykor-cheatsheet.Rmd | 20 inst/doc/codebook.Rmd | 24 inst/doc/codebook.html | 225 inst/doc/introduction.Rmd | 15 inst/doc/introduction.html | 51 inst/doc/quickstart.Rmd | 3 inst/doc/quickstart.html | 44 inst/extdata/legislators.csv | 1900 +- inst/extdata/seminars.csv | 8592 +++++----- inst/rmd-tutorials/01-tidyverse-basics.Rmd | 4 inst/rmd-tutorials/04-panel-data.Rmd | 11 inst/rmd-tutorials/05-text-analysis.Rmd | 4 inst/rmd-tutorials/07-roll-call-analysis.Rmd | 35 inst/rmd-tutorials/08-bill-success.Rmd | 6 inst/shinyapps/01-tidyverse-basics/01-tidyverse-basics.Rmd | 4 inst/shinyapps/04-panel-data/04-panel-data.Rmd | 11 inst/shinyapps/05-text-analysis/05-text-analysis.Rmd | 4 inst/shinyapps/07-roll-call-analysis/07-roll-call-analysis.Rmd | 35 inst/shinyapps/08-bill-success/08-bill-success.Rmd | 6 inst/shinyapps/assemblykor-tutorials/assemblykor-tutorials.Rmd | 62 inst/tutorials/01-tidyverse-basics/01-tidyverse-basics.Rmd | 6 inst/tutorials/04-panel-data/04-panel-data.Rmd | 6 inst/tutorials/05-text-analysis/05-text-analysis.Rmd | 4 inst/tutorials/07-roll-call-analysis/07-roll-call-analysis.Rmd | 35 inst/tutorials/08-bill-success/08-bill-success.Rmd | 41 man/assemblykor-package.Rd | 29 man/bills.Rd | 36 man/get_bill_texts.Rd | 36 man/get_proposers.Rd | 51 man/get_speech_tokens.Rd | 19 man/legislators.Rd | 49 man/roll_calls.Rd | 47 man/seminars.Rd | 46 man/speeches.Rd | 23 man/votes.Rd | 10 man/wealth.Rd | 20 tests/testthat/test-datasets.R | 69 tests/testthat/test-functions.R | 28 vignettes/codebook.Rmd | 24 vignettes/introduction.Rmd | 15 vignettes/quickstart.Rmd | 3 56 files changed, 6547 insertions(+), 5826 deletions(-)
Title: An API Client for Australian Weather and Climate Data Resources
Description: Provides automated downloading, parsing and formatting of
weather data for Australia through API endpoints provided by the
Department of Primary Industries and Regional Development (DPIRD) of
Western Australia and by the Science and Technology Division of the
Queensland Government's Department of Environment and Science (DES).
As well as the Bureau of Meteorology (BOM) of the Australian
government precis and coastal forecasts,
and downloading and importing radar and satellite imagery files.
DPIRD weather data are accessed through public APIs provided by
DPIRD, <https://www.dpird.wa.gov.au/online-tools/apis/>, providing
access to weather station data from the DPIRD weather station
network. Australia-wide weather data are based on data from the
Australian Bureau of Meteorology (BOM) data and accessed through
SILO (Scientific Information for Land Owners) Jeffrey et al. (2001)
<doi:10.1016/S1364-8152(01)00008-1>. DPIRD data are made available
under a Creative Commons Attribut [...truncated...]
Author: Rodrigo Pires [aut, cre] ,
Anna Hepworth [aut] ,
Rebecca O'Leary [aut],
Jonathan Carroll [aut] ,
James Goldie [aut] ,
Dean Marchiori [aut] ,
Paul Melloy [aut] ,
Mark Padgham [aut] ,
Hugh Parsonage [aut] ,
Keith Pembleton [ctb] ,
Maelle Salmon [ctb] . [...truncated...]
Maintainer: Rodrigo Pires <rodrigo.pires@dpird.wa.gov.au>
Diff between weatherOz versions 3.0.0 dated 2026-04-08 and 3.0.1 dated 2026-09-29
DESCRIPTION | 6 +-- MD5 | 16 ++++---- NEWS.md | 30 ++++++++++++++++ README.md | 52 ++++++++++++++-------------- inst/WORDLIST | 1 tests/testthat/test-find_forecast_towns.R | 2 + tests/testthat/test-find_stations_in.R | 22 ++++++++++- tests/testthat/test-get_satellite_imagery.R | 4 ++ tests/testthat/test-get_stations_metadata.R | 10 ++++- 9 files changed, 103 insertions(+), 40 deletions(-)
Title: Some Utilities & Base Supports for 'SigBridgeR'
Description: Provides fundamental function support for 'SigBridgeR' and its single-cell phenotypic screening algorithm, including optional functions.
Author: Yuxi Yang [cre, aut]
Maintainer: Yuxi Yang <15364051195@163.com>
Diff between SigBridgeRUtils versions 0.2.6 dated 2026-03-12 and 0.2.7 dated 2026-09-29
SigBridgeRUtils-0.2.6/SigBridgeRUtils/man/NULL_or.Rd |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/DESCRIPTION | 22 SigBridgeRUtils-0.2.7/SigBridgeRUtils/MD5 | 515 +++++++ SigBridgeRUtils-0.2.7/SigBridgeRUtils/NAMESPACE | 13 SigBridgeRUtils-0.2.7/SigBridgeRUtils/NEWS.md |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/00_global_variables.R | 3 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/10_ts_cli.R | 12 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/11_matrixStats.R | 660 ++-------- SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/12_FilterArgs4Func.R | 2 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/13_MASS.R | 135 -- SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/14_preprocessCore.R | 59 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/15_options.R | 18 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/16_infix.R | 61 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/17_tibble.R | 16 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/18_others.R | 8 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/19_MatchArg.R | 4 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/20_AddMisc.R | 2 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/22_SetupPyEnv.R | 6 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/23_ListPyEnv.R | 18 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/24_caller_cli.R | 20 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/25_MatchFunc2Args.R | 20 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/26_GetFuncArgs.R | 17 SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/26_detect_gpu.R |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/95-zeallot.R |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/RcppExports.R |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/R/SigBridgeRUtils-package.R |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/README.md | 33 SigBridgeRUtils-0.2.7/SigBridgeRUtils/inst |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/AddTimeStamp2cli.Rd | 6 SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/CreateTimeStampCliEnv.Rd | 6 SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/GetCallerInfo.Rd | 2 SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/GetFuncArgs.Rd | 7 SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/MatchArg.Rd | 2 SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/SetupPyEnv.Rd | 2 SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/SetupPyEnv.conda.Rd | 2 SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/SetupPyEnv.venv.Rd | 4 SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/SigBridgeRUtils-package.Rd |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/SigBridgeR_Function_Setting.Rd | 2 SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/TimeStamp.Rd | 6 SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/detect_gpu.Rd |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/ginv2.Rd | 9 SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/grapes-set-grapes.Rd |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/man/matrix-stats.Rd | 92 - SigBridgeRUtils-0.2.7/SigBridgeRUtils/src |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-10_TimeStamp.R | 42 SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-11_matrixStats.R | 176 +- SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-12_FilterArgs4Func.R | 10 SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-13_MASS.R | 67 - SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-19_match_arg_in_func.R | 8 SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-24_caller_cli.R | 4 SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-25_MatchFunc2Args.R | 6 SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-26_GetFuncArgs.R | 29 SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-benchmark_MASS_ginv.R |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-benchmark_matrixStats.R |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-benchmark_normalize_quantiles.R |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-benchmark_zeallot.R |only SigBridgeRUtils-0.2.7/SigBridgeRUtils/tests/testthat/test-zeallot.R |only 57 files changed, 1062 insertions(+), 1064 deletions(-)
More information about SigBridgeRUtils at CRAN
Permanent link
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation ('ODE') models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
'VODE' and 'LSODA' are in the public domain. The vendored 'SUNDIALS'
'CVODE' sources and headers are released under the BSD-3-Clause license.
The information is available in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [aut],
Aaron Collier [ctb] ,
Alan Hindmarsh [ctb],
Arun Srinivasan [ctb],
Ashley Crawford [ctb] ,
Awad H. Al-Mohy [ctb],
Bill Denney [ctb] ,
Cleve Moler [ctb],
Cody J. Balos [ctb] ,
Dan Shumaker [ctb] ,
Dan [...truncated...]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2 versions 5.1.7 dated 2026-09-14 and 5.1.7.1 dated 2026-09-29
DESCRIPTION | 6 +++--- MD5 | 6 +++--- build/partial.rdb |binary src/rxomp.h | 5 +++++ 4 files changed, 11 insertions(+), 6 deletions(-)
Title: A Discrete Colour Palette
Description: A discrete colour palette. These colours make it easier to create
relatively accessible and colour-blind safe visualisation.
Author: David Hodge [aut, cre, cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between jumble versions 0.1.2 dated 2026-07-06 and 0.2.0 dated 2026-09-29
jumble-0.1.2/jumble/man/red.Rd |only jumble-0.1.2/jumble/tests |only jumble-0.2.0/jumble/DESCRIPTION | 10 +- jumble-0.2.0/jumble/MD5 | 30 +++--- jumble-0.2.0/jumble/NAMESPACE | 2 jumble-0.2.0/jumble/NEWS.md | 7 + jumble-0.2.0/jumble/R/jumble.R | 36 +++---- jumble-0.2.0/jumble/README.md | 51 +++++++++-- jumble-0.2.0/jumble/man/figures/README-example-1.png |binary jumble-0.2.0/jumble/man/figures/README-example-2.png |only jumble-0.2.0/jumble/man/figures/README-example-3.png |only jumble-0.2.0/jumble/man/figures/README-example-4.png |only jumble-0.2.0/jumble/man/figures/README-unnamed-chunk-2-1.png |binary jumble-0.2.0/jumble/man/figures/README-unnamed-chunk-3-1.png |binary jumble-0.2.0/jumble/man/figures/README-unnamed-chunk-3-2.png |only jumble-0.2.0/jumble/man/figures/README-unnamed-chunk-3-3.png |only jumble-0.2.0/jumble/man/figures/README-unnamed-chunk-4-1.png |binary jumble-0.2.0/jumble/man/jumble.Rd | 8 - jumble-0.2.0/jumble/man/olive.Rd |only 19 files changed, 94 insertions(+), 50 deletions(-)
Title: Hotelling’s T-Squared Statistic and Ellipse
Description: Functions to calculate the Hotelling’s T-squared statistic and corresponding confidence ellipses. Provides the semi-axes of the Hotelling’s T-squared ellipses at user-defined confidence levels (95% and 99% by default). Enables users to obtain the coordinates in two or three dimensions at user-defined confidence levels, allowing for the construction of 2D or 3D ellipses with customized confidence levels. Bro and Smilde (2014) <DOI:10.1039/c3ay41907j>. Brereton (2016) <DOI:10.1002/cem.2763>.
Author: Christian L. Goueguel [aut, cre]
Maintainer: Christian L. Goueguel <christian.goueguel@gmail.com>
Diff between HotellingEllipse versions 1.2.0 dated 2024-07-04 and 1.3.0 dated 2026-09-29
DESCRIPTION | 18 MD5 | 45 - NAMESPACE | 23 NEWS.md | 32 R/HotellingEllipse-package.R | 23 R/ellipseCoord.R | 51 - R/ellipseParam.R | 146 ++- R/utils.R |only README.md | 99 +- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/HotellingEllipse.R | 55 + inst/doc/HotellingEllipse.Rmd | 67 + inst/doc/HotellingEllipse.html | 995 ++++++++++++++++--------- inst/pkgdown.yml | 5 man/ellipseCoord.Rd | 16 man/ellipseParam.Rd | 41 - man/figures/README-unnamed-chunk-16-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-22-1.-rgl.png |only man/figures/README-unnamed-chunk-25-1.png |only tests/testthat/test-ellipseCoord.R | 33 tests/testthat/test-ellipseParam.R | 151 +++ vignettes/HotellingEllipse.Rmd | 67 + 25 files changed, 1255 insertions(+), 614 deletions(-)
More information about HotellingEllipse at CRAN
Permanent link
Title: Modelling Zero Values in Compositional Data Using a Censored
Model
Description: Modelling structural zeros in compositional data assuming a latent Gaussian model, where MLE is performed via the EM algorithm. The relevant paper is Tsagris and Alharbi (2026) <doi:10.48550/arXiv.2208.13073>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositionalzerocens versions 1.0 dated 2026-08-08 and 1.1 dated 2026-09-29
DESCRIPTION | 12 +++++----- MD5 | 20 +++++++++++------ NAMESPACE | 1 R/dzerocens.R |only R/gof.zerocens.R |only R/prob.zerocens.R |only R/rzerocens.R | 40 ++++++++++++++++++----------------- R/zerocens.em.R | 2 - man/Compositionalzerocens-package.Rd | 6 ++--- man/dzerocens.Rd |only man/gof.zerocens.Rd |only man/prob.zerocens.Rd |only man/rzerocens.Rd | 7 ++---- man/zerocens.em.Rd | 2 - 14 files changed, 49 insertions(+), 41 deletions(-)
More information about Compositionalzerocens at CRAN
Permanent link
Title: Comprehensive Cointegration Tests with Fourier and Panel Methods
Description: A unified toolkit for cointegration testing including
Fourier-based cointegration tests (FADL, FEG, FEG2, Tsong) that
accommodate smooth structural breaks via flexible Fourier terms, and
panel CADF cointegration tests with structural breaks using the Common
Correlated Effects (CCE) estimator following Banerjee, Arcabic and Lee
(2017) <doi:10.1016/j.econmod.2016.11.004>, Tsong, Lee, Tsai and Hu
(2016) <doi:10.1007/s00181-015-1028-6>, and Banerjee and
Carrion-i-Silvestre (2025) <doi:10.1080/07350015.2024.2327844>.
Author: Muhammad Abdullah Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Abdullah Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between cointests versions 1.0.0 dated 2026-03-27 and 1.1.0 dated 2026-09-29
DESCRIPTION | 8 MD5 | 22 NAMESPACE | 11 R/fcoint_fcoint.R | 1036 ++++++++++++++++------------------ R/xtcadfcoint_xtcadfcoint.R | 882 +++++++++++----------------- build/partial.rdb |binary inst |only man/fcoint.Rd | 165 +++-- man/print.fcoint.Rd | 12 man/print.xtcadfcoint.Rd | 20 man/summary.xtcadfcoint.Rd | 20 man/xtcadfcoint.Rd | 184 ++++-- tests/testthat/test-stata-reference.R |only 13 files changed, 1162 insertions(+), 1198 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <https://www.canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut],
Connie Brett [aut, cre]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 1.65.2 dated 2026-08-21 and 1.70.3 dated 2026-09-29
DESCRIPTION | 17 MD5 | 91 +- NAMESPACE | 3 NEWS.md | 4 R/canvasXpress.R | 8 R/config_params.R |only R/ggplot_as_list.R | 564 ++++++++++++++ R/ggplot_decompiled.R |only R/internal_functionality.R | 4 R/notebook_functionality.R |only README.md | 2 inst/config |only inst/doc/additional_examples.html | 4 inst/doc/getting_started.html | 4 inst/htmlwidgets/canvasXpress.js | 61 - inst/htmlwidgets/canvasXpress.yaml | 2 inst/htmlwidgets/lib/canvasXpress/canvasXpress.css | 253 ++++++ inst/htmlwidgets/lib/canvasXpress/canvasXpress.d.ts |only inst/htmlwidgets/lib/canvasXpress/canvasXpress.min.js | 24 inst/ui-examples/cX-function.R.gz |binary man/canvasXpress.Rd | 5 man/cxConfigParams.Rd |only man/cxValidateConfig.Rd |only man/ggplot.decompiled.Rd |only tests/testthat/fixtures |only tests/testthat/helper-ggplot-corpus.R |only tests/testthat/setup.R | 1 tests/testthat/test-other-config-params.R |only tests/testthat/test-other-ggplot-fixtures.R |only tests/testthat/test-other-ggplot_as_list.R | 704 +++++++++++++++--- tests/testthat/test-other-ggplot_decompiled.R |only tests/testthat/test-other-notebook_functionality.R |only tests/testthat/test-ui-bar.R | 4 tests/testthat/test-ui-boxplot.R | 4 tests/testthat/test-ui-heatmap.R | 8 tests/testthat/test-ui-kaplanmeier.R | 13 tests/testthat/test-ui-meter.R | 16 tests/testthat/test-ui-network.R | 4 tests/testthat/test-ui-oncoprint.R | 24 tests/testthat/test-ui-optionswall.R |only tests/testthat/test-ui-sankey.R | 52 + tests/testthat/test-ui-scatter2D.R | 8 tests/testthat/test-ui-violin.R | 48 + tests/testthat/test-zz-other-ggplot-ggh4x.R |only tools |only 45 files changed, 1718 insertions(+), 214 deletions(-)
Title: Statistical Power, Sample Size, and Detectable Effect
Calculations
Description: Flexible and comprehensive functions for statistical power, minimum required
sample size, and minimum detectable effect calculations across a wide range of
commonly used hypothesis tests in psychological, biomedical, and social sciences.
Author: Metin Bulus [aut, cre, cph] ,
Sebastian Jentschke [aut, cph]
Maintainer: Metin Bulus <bulusmetin@gmail.com>
This is a re-admission after prior archival of version 1.2.0 dated 2026-06-22
Diff between pwrss versions 1.2.0 dated 2026-06-22 and 1.3.1 dated 2026-09-29
pwrss-1.2.0/pwrss/tests/testthat/_snaps |only pwrss-1.2.0/pwrss/vignettes/rsconnect |only pwrss-1.3.1/pwrss/DESCRIPTION | 28 pwrss-1.3.1/pwrss/MD5 | 307 pwrss-1.3.1/pwrss/NAMESPACE | 182 pwrss-1.3.1/pwrss/NEWS.md | 107 pwrss-1.3.1/pwrss/R/ancova.R | 3512 +- pwrss-1.3.1/pwrss/R/anova.mixed.R | 634 pwrss-1.3.1/pwrss/R/checks.R | 587 pwrss-1.3.1/pwrss/R/correlations.R | 2454 - pwrss-1.3.1/pwrss/R/generic.binom.test.R | 473 pwrss-1.3.1/pwrss/R/generic.chisq.test.R | 244 pwrss-1.3.1/pwrss/R/generic.f.test.R | 252 pwrss-1.3.1/pwrss/R/generic.lp.test.R | 512 pwrss-1.3.1/pwrss/R/generic.t.test.R | 474 pwrss-1.3.1/pwrss/R/generic.z.test.R | 450 pwrss-1.3.1/pwrss/R/helper.R | 215 pwrss-1.3.1/pwrss/R/lambdap.R |only pwrss-1.3.1/pwrss/R/means.student.R | 1794 - pwrss-1.3.1/pwrss/R/means.wilcoxon.R | 977 pwrss-1.3.1/pwrss/R/plot.binom.R | 663 pwrss-1.3.1/pwrss/R/plot.chisq.R | 325 pwrss-1.3.1/pwrss/R/plot.f.R | 337 pwrss-1.3.1/pwrss/R/plot.lp.R | 676 pwrss-1.3.1/pwrss/R/plot.t.R | 654 pwrss-1.3.1/pwrss/R/plots.R | 150 pwrss-1.3.1/pwrss/R/printing.R | 2678 - pwrss-1.3.1/pwrss/R/proportions.fisher.R | 835 pwrss-1.3.1/pwrss/R/proportions.gof.R | 498 pwrss-1.3.1/pwrss/R/proportions.mcnemar.R | 857 pwrss-1.3.1/pwrss/R/proportions.onetwo.R | 2471 - pwrss-1.3.1/pwrss/R/regression.linear.R | 1226 pwrss-1.3.1/pwrss/R/regression.logistic.R | 1269 pwrss-1.3.1/pwrss/R/regression.mediation.R | 1184 pwrss-1.3.1/pwrss/R/regression.poisson.R | 989 pwrss-1.3.1/pwrss/R/utils.R | 2293 - pwrss-1.3.1/pwrss/build/vignette.rds |binary pwrss-1.3.1/pwrss/inst/CITATION | 24 pwrss-1.3.1/pwrss/inst/WORDLIST | 339 pwrss-1.3.1/pwrss/inst/doc/examples.R | 2706 - pwrss-1.3.1/pwrss/inst/doc/examples.Rmd | 4737 +-- pwrss-1.3.1/pwrss/inst/doc/examples.html |15245 +++++------ pwrss-1.3.1/pwrss/man/cor.to.z.Rd | 60 pwrss-1.3.1/pwrss/man/cors.to.q.Rd | 66 pwrss-1.3.1/pwrss/man/d.to.cles.Rd | 100 pwrss-1.3.1/pwrss/man/etasq.to.f.Rd | 68 pwrss-1.3.1/pwrss/man/f.to.etasq.Rd | 68 pwrss-1.3.1/pwrss/man/f.to.rsq.Rd | 82 pwrss-1.3.1/pwrss/man/factorial.contrasts.Rd | 230 pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-10-1.png |binary pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-11-1.png |binary pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-12-1.png |only pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-17-1.png |only pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-19-1.png |binary pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-23-1.png |only pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-8-1.png |binary pwrss-1.3.1/pwrss/man/inflate.sample.Rd | 60 pwrss-1.3.1/pwrss/man/joint.probs.2x2.Rd | 232 pwrss-1.3.1/pwrss/man/lambdap.Rd |only pwrss-1.3.1/pwrss/man/marginal.probs.2x2.Rd | 234 pwrss-1.3.1/pwrss/man/means.to.d.Rd | 136 pwrss-1.3.1/pwrss/man/means.to.etasq.Rd | 143 pwrss-1.3.1/pwrss/man/power.binom.test.Rd | 186 pwrss-1.3.1/pwrss/man/power.chisq.gof.Rd | 276 pwrss-1.3.1/pwrss/man/power.chisq.test.Rd | 132 pwrss-1.3.1/pwrss/man/power.exact.fisher.Rd | 263 pwrss-1.3.1/pwrss/man/power.exact.mcnemar.Rd | 348 pwrss-1.3.1/pwrss/man/power.exact.onecor.Rd | 176 pwrss-1.3.1/pwrss/man/power.exact.oneprop.Rd | 174 pwrss-1.3.1/pwrss/man/power.exact.twoprops.Rd | 267 pwrss-1.3.1/pwrss/man/power.f.ancova.Rd | 356 pwrss-1.3.1/pwrss/man/power.f.ancova.keppel.Rd | 252 pwrss-1.3.1/pwrss/man/power.f.ancova.shieh.Rd | 498 pwrss-1.3.1/pwrss/man/power.f.mixed.anova.Rd | 360 pwrss-1.3.1/pwrss/man/power.f.regression.Rd | 233 pwrss-1.3.1/pwrss/man/power.f.test.Rd | 130 pwrss-1.3.1/pwrss/man/power.lp.test.Rd | 247 pwrss-1.3.1/pwrss/man/power.np.wilcoxon.Rd | 476 pwrss-1.3.1/pwrss/man/power.t.contrast.Rd | 222 pwrss-1.3.1/pwrss/man/power.t.contrasts.Rd | 274 pwrss-1.3.1/pwrss/man/power.t.regression.Rd | 432 pwrss-1.3.1/pwrss/man/power.t.student.Rd | 712 pwrss-1.3.1/pwrss/man/power.t.test.Rd | 220 pwrss-1.3.1/pwrss/man/power.t.welch.Rd | 292 pwrss-1.3.1/pwrss/man/power.z.logistic.Rd | 477 pwrss-1.3.1/pwrss/man/power.z.mediation.Rd | 481 pwrss-1.3.1/pwrss/man/power.z.onecor.Rd | 198 pwrss-1.3.1/pwrss/man/power.z.oneprop.Rd | 234 pwrss-1.3.1/pwrss/man/power.z.poisson.Rd | 397 pwrss-1.3.1/pwrss/man/power.z.test.Rd | 226 pwrss-1.3.1/pwrss/man/power.z.twocors.Rd | 222 pwrss-1.3.1/pwrss/man/power.z.twocors.steiger.Rd | 337 pwrss-1.3.1/pwrss/man/power.z.twoprops.Rd | 280 pwrss-1.3.1/pwrss/man/probs.to.h.Rd | 74 pwrss-1.3.1/pwrss/man/probs.to.w.Rd | 202 pwrss-1.3.1/pwrss/man/q.to.cors.Rd | 70 pwrss-1.3.1/pwrss/man/rsq.to.f.Rd | 82 pwrss-1.3.1/pwrss/man/z.to.cor.Rd | 60 pwrss-1.3.1/pwrss/tests/testthat.R | 24 pwrss-1.3.1/pwrss/tests/testthat/test-ancova.R | 1937 - pwrss-1.3.1/pwrss/tests/testthat/test-anova.mixed.R | 492 pwrss-1.3.1/pwrss/tests/testthat/test-checks.R | 318 pwrss-1.3.1/pwrss/tests/testthat/test-correlations.R | 1318 pwrss-1.3.1/pwrss/tests/testthat/test-generic.binom.test.R | 168 pwrss-1.3.1/pwrss/tests/testthat/test-generic.chisq.test.R | 50 pwrss-1.3.1/pwrss/tests/testthat/test-generic.f.test.R | 64 pwrss-1.3.1/pwrss/tests/testthat/test-generic.lp.test.R | 154 pwrss-1.3.1/pwrss/tests/testthat/test-generic.t.test.R | 210 pwrss-1.3.1/pwrss/tests/testthat/test-generic.z.test.R | 146 pwrss-1.3.1/pwrss/tests/testthat/test-helper.R | 332 pwrss-1.3.1/pwrss/tests/testthat/test-lambdap.R |only pwrss-1.3.1/pwrss/tests/testthat/test-means.student.R | 1670 - pwrss-1.3.1/pwrss/tests/testthat/test-means.wilcoxon.R | 1530 - pwrss-1.3.1/pwrss/tests/testthat/test-plots.R | 236 pwrss-1.3.1/pwrss/tests/testthat/test-printing.R | 6528 ++-- pwrss-1.3.1/pwrss/tests/testthat/test-proportions.fisher.R | 302 pwrss-1.3.1/pwrss/tests/testthat/test-proportions.gof.R | 240 pwrss-1.3.1/pwrss/tests/testthat/test-proportions.mcnemar.R | 392 pwrss-1.3.1/pwrss/tests/testthat/test-proportions.onetwo.R | 1332 pwrss-1.3.1/pwrss/tests/testthat/test-regression.linear.R | 829 pwrss-1.3.1/pwrss/tests/testthat/test-regression.logistic.R | 808 pwrss-1.3.1/pwrss/tests/testthat/test-regression.mediation.R | 655 pwrss-1.3.1/pwrss/tests/testthat/test-regression.poisson.R | 593 pwrss-1.3.1/pwrss/tests/testthat/test-utils.R | 646 pwrss-1.3.1/pwrss/vignettes/examples.Rmd | 4737 +-- pwrss-1.3.1/pwrss/vignettes/examples.css | 30 126 files changed, 45387 insertions(+), 45057 deletions(-)
Title: Generalized Linear Mixed Models using Template Model Builder
Description: Fit linear and generalized linear mixed models with various
extensions, including zero-inflation. The models are fitted using maximum
likelihood estimation via 'TMB' (Template Model Builder). Random effects are
assumed to be Gaussian on the scale of the linear predictor and are integrated
out using the Laplace approximation. Gradients are calculated using automatic
differentiation.
Author: Mollie Brooks [aut, cre] ,
Ben Bolker [aut] ,
Kasper Kristensen [aut],
Martin Maechler [aut] ,
Arni Magnusson [aut] ,
Maeve McGillycuddy [ctb],
Hans Skaug [aut] ,
Anders Nielsen [aut] ,
Casper Berg [aut] ,
Koen van Bentham [aut],
Nafis Sadat [ctb] ,
[...truncated...]
Maintainer: Mollie Brooks <mollieebrooks@gmail.com>
Diff between glmmTMB versions 1.1.14 dated 2026-01-15 and 1.1.15.2 dated 2026-09-29
DESCRIPTION | 37 +- MD5 | 161 ++++++---- NAMESPACE | 287 ++++++++++-------- R/Anova.R | 259 ++++++++++++++--- R/VarCorr.R | 26 + R/denom_df.R | 324 ++++++++++++++++++++- R/diagnose.R | 6 R/distributions.R |only R/effects.R | 7 R/emmeans.R | 241 ++++++++++++++- R/enum.R | 4 R/family.R | 65 ++++ R/glmmTMB.R | 276 ++++++++++++++---- R/methods.R | 409 +++++++++++++++++++++------ R/predict.R | 59 +++ R/priors.R | 43 +- R/profile.R | 13 R/rtmb_covstruct.R |only R/rtmb_distributions.R |only R/rtmb_tpl.R |only R/to_be_removed.R |only R/utils.R | 136 +++++++- inst/NEWS.Rd | 205 ++++++++++++- inst/doc/covstruct.html | 4 inst/doc/glmmTMB.pdf |binary inst/doc/hacking.html | 4 inst/doc/mcmc.html | 8 inst/doc/miscEx.html | 4 inst/doc/model_evaluation.pdf |binary inst/doc/parallel.html | 4 inst/doc/priors.R | 32 ++ inst/doc/priors.html | 25 + inst/doc/priors.rmd | 43 ++ inst/doc/sim.html | 10 inst/doc/troubleshooting.html | 4 inst/vignette_data/model_evaluation.rda |binary man/anova.glmmTMB.Rd |only man/dbell.Rd |only man/dcombinom.Rd |only man/dgenpois.Rd |only man/diagnose.Rd | 2 man/downstream_methods.Rd | 83 +++++ man/getME.glmmTMB.Rd | 11 man/glmmTMBControl.Rd | 16 - man/nbinom2.Rd | 19 + man/predict.glmmTMB.Rd | 9 man/reexports.Rd | 3 man/reinstalling.Rd | 44 +- man/summary.glmmTMB.Rd | 17 - man/useRTMB.Rd |only man/weights.glmmTMB.Rd | 17 - src/distrib.h | 172 +++++++++++ src/glmmTMB.cpp | 130 ++++++++ src/init.h | 12 tests/testthat/setup-rtmb.R |only tests/testthat/test-VarCorr.R | 21 - tests/testthat/test-anova-ddf.R |only tests/testthat/test-basics.R | 15 tests/testthat/test-control.R | 92 ++++++ tests/testthat/test-ddf.R | 326 +++++++++++++++++++++ tests/testthat/test-diagnose.R | 20 + tests/testthat/test-distributions.R |only tests/testthat/test-families.R | 10 tests/testthat/test-mapopt.R | 26 + tests/testthat/test-mappedvcov.R |only tests/testthat/test-methods.R | 177 +++++++++++ tests/testthat/test-ordinal.R |only tests/testthat/test-predict.R | 2 tests/testthat/test-priors.R | 18 + tests/testthat/test-reml.R | 22 + tests/testthat/test-rr.R | 24 + tests/testthat/test-rtmb-bell.R |only tests/testthat/test-rtmb-beta.R |only tests/testthat/test-rtmb-betabinomial.R |only tests/testthat/test-rtmb-binomial.R |only tests/testthat/test-rtmb-combinomial.R |only tests/testthat/test-rtmb-compois.R |only tests/testthat/test-rtmb-control.R |only tests/testthat/test-rtmb-gamma.R |only tests/testthat/test-rtmb-gaussian.R |only tests/testthat/test-rtmb-genpois.R |only tests/testthat/test-rtmb-lognormal.R |only tests/testthat/test-rtmb-nbinom1.R |only tests/testthat/test-rtmb-nbinom12.R |only tests/testthat/test-rtmb-nbinom2.R |only tests/testthat/test-rtmb-ordbeta.R |only tests/testthat/test-rtmb-osa.R |only tests/testthat/test-rtmb-poisson.R |only tests/testthat/test-rtmb-rr.R |only tests/testthat/test-rtmb-simulation.R |only tests/testthat/test-rtmb-skewnormal.R |only tests/testthat/test-rtmb-spatial.R |only tests/testthat/test-rtmb-t.R |only tests/testthat/test-rtmb-truncated-compois.R |only tests/testthat/test-rtmb-truncated-genpois.R |only tests/testthat/test-rtmb-truncated-nbinom1.R |only tests/testthat/test-rtmb-truncated-nbinom2.R |only tests/testthat/test-rtmb-truncated-poisson.R |only tests/testthat/test-rtmb-tweedie.R |only tests/testthat/test-utils.R | 10 tests/testthat/test-weight.R | 30 + tests/testthat/test-zi.R | 8 vignettes/priors.rmd | 43 ++ 103 files changed, 3465 insertions(+), 610 deletions(-)
Title: Analyze Mathematical Models of Healthcare Facility Transmission
Description: Calculate useful quantities for a user-defined differential equation
model of infectious disease transmission among individuals in a healthcare
facility. Input rates of transition between states of individuals with and
without the disease-causing organism, distributions of states at facility
admission, relative infectivity of transmissible states, and the facility length
of stay distribution. Calculate the model equilibrium and the basic facility
reproduction number, as described in Toth et al. (2025)
<doi:10.1371/journal.pcbi.1013577>.
Author: Damon Toth [aut, cre, cph] ,
Centers for Disease Control and Prevention [fnd]
Maintainer: Damon Toth <damon.toth@hsc.utah.edu>
This is a re-admission after prior archival of version 0.2.1 dated 2025-11-06
Diff between facilityepimath versions 0.2.1 dated 2025-11-06 and 0.2.3 dated 2026-09-29
DESCRIPTION | 8 MD5 | 24 NAMESPACE | 2 NEWS.md | 4 R/equaleigvec.R | 10 R/facilityR0.R | 2 R/facilityeq.R | 4 README.md | 288 ++--- build/vignette.rds |binary inst/doc/equilibrium-and-R0.R | 124 +- inst/doc/equilibrium-and-R0.html | 1191 +++++++++++------------ inst/extdata/rLHS.txt | 2002 +++++++++++++++++++-------------------- tests/testthat/test-facilityeq.R | 17 13 files changed, 1840 insertions(+), 1836 deletions(-)
More information about facilityepimath at CRAN
Permanent link
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.5.5 dated 2026-07-25 and 1.5.6 dated 2026-09-29
duckdb-1.5.5/duckdb/inst/include |only duckdb-1.5.5/duckdb/man/figures/logo.png |only duckdb-1.5.5/duckdb/src/Makevars.duckdb |only duckdb-1.5.5/duckdb/src/Makevars.rstrtmgr |only duckdb-1.5.5/duckdb/src/Makevars.system-lib |only duckdb-1.5.6/duckdb/DESCRIPTION | 25 duckdb-1.5.6/duckdb/MD5 | 443 ++--- duckdb-1.5.6/duckdb/NAMESPACE | 1 duckdb-1.5.6/duckdb/NEWS.md | 129 + duckdb-1.5.6/duckdb/R/Connection.R | 62 duckdb-1.5.6/duckdb/R/Driver.R | 330 ++- duckdb-1.5.6/duckdb/R/Result.R | 48 duckdb-1.5.6/duckdb/R/Viewer.R | 92 - duckdb-1.5.6/duckdb/R/backend-dbplyr__duckdb_connection.R | 405 +++- duckdb-1.5.6/duckdb/R/check_unsupported_arg.R |only duckdb-1.5.6/duckdb/R/convert.R | 26 duckdb-1.5.6/duckdb/R/cpp11.R | 56 duckdb-1.5.6/duckdb/R/cran-guard.R | 41 duckdb-1.5.6/duckdb/R/csv.R | 25 duckdb-1.5.6/duckdb/R/dbAppendTable__duckdb_connection.R | 81 duckdb-1.5.6/duckdb/R/dbBind__duckdb_result.R | 6 duckdb-1.5.6/duckdb/R/dbBind__duckdb_result_arrow.R | 22 duckdb-1.5.6/duckdb/R/dbClearResult__duckdb_result_arrow.R | 15 duckdb-1.5.6/duckdb/R/dbColumnInfo__duckdb_result.R | 10 duckdb-1.5.6/duckdb/R/dbColumnInfo__duckdb_result_arrow.R | 10 duckdb-1.5.6/duckdb/R/dbConnect__duckdb_driver.R | 88 - duckdb-1.5.6/duckdb/R/dbDataType__duckdb_driver.R | 20 duckdb-1.5.6/duckdb/R/dbDisconnect__duckdb_connection.R | 3 duckdb-1.5.6/duckdb/R/dbExistsTable__duckdb_connection_ANY.R | 18 duckdb-1.5.6/duckdb/R/dbFetchArrow__duckdb_result_arrow.R | 140 + duckdb-1.5.6/duckdb/R/dbFetch__duckdb_result.R | 33 duckdb-1.5.6/duckdb/R/dbGetRowCount__duckdb_result.R | 4 duckdb-1.5.6/duckdb/R/dbGetRowCount__duckdb_result_arrow.R | 10 duckdb-1.5.6/duckdb/R/dbGetRowsAffected__duckdb_result.R | 10 duckdb-1.5.6/duckdb/R/dbGetRowsAffected__duckdb_result_arrow.R | 10 duckdb-1.5.6/duckdb/R/dbGetStatement__duckdb_result.R | 4 duckdb-1.5.6/duckdb/R/dbGetStatement__duckdb_result_arrow.R | 10 duckdb-1.5.6/duckdb/R/dbHasCompleted__duckdb_result.R | 4 duckdb-1.5.6/duckdb/R/dbHasCompleted__duckdb_result_arrow.R | 10 duckdb-1.5.6/duckdb/R/dbIsValid__duckdb_connection.R | 3 duckdb-1.5.6/duckdb/R/dbIsValid__duckdb_driver.R | 21 duckdb-1.5.6/duckdb/R/dbListFields__duckdb_connection_Id.R |only duckdb-1.5.6/duckdb/R/dbListFields__duckdb_connection_character.R | 14 duckdb-1.5.6/duckdb/R/dbQuoteIdentifier__duckdb_connection.R | 29 duckdb-1.5.6/duckdb/R/dbQuoteLiteral__duckdb_connection.R | 49 duckdb-1.5.6/duckdb/R/dbRemoveTable__duckdb_connection_character.R | 13 duckdb-1.5.6/duckdb/R/dbSendQueryArrow__duckdb_connection_character.R | 10 duckdb-1.5.6/duckdb/R/dbSendQuery__duckdb_connection_character.R | 37 duckdb-1.5.6/duckdb/R/dbWriteTable__duckdb_connection_character_data.frame.R | 120 - duckdb-1.5.6/duckdb/R/dbplyr-version.R |only duckdb-1.5.6/duckdb/R/duckdb.R | 92 - duckdb-1.5.6/duckdb/R/duckdb_error.R |only duckdb-1.5.6/duckdb/R/duckdb_types.R |only duckdb-1.5.6/duckdb/R/duckdb_types_arrow.R |only duckdb-1.5.6/duckdb/R/extensions.R | 176 +- duckdb-1.5.6/duckdb/R/memory.R |only duckdb-1.5.6/duckdb/R/package.R | 5 duckdb-1.5.6/duckdb/R/print__duckdb_explain.R | 14 duckdb-1.5.6/duckdb/R/progress_display.R | 45 duckdb-1.5.6/duckdb/R/register.R | 48 duckdb-1.5.6/duckdb/R/relational.R | 130 - duckdb-1.5.6/duckdb/R/rethrow-gen.R | 138 + duckdb-1.5.6/duckdb/R/rethrow.R | 31 duckdb-1.5.6/duckdb/R/rlang.R | 31 duckdb-1.5.6/duckdb/R/s3_register.R | 13 duckdb-1.5.6/duckdb/R/show__duckdb_connection.R | 6 duckdb-1.5.6/duckdb/R/show__duckdb_result.R | 7 duckdb-1.5.6/duckdb/R/sql.R | 24 duckdb-1.5.6/duckdb/R/storage-home.R | 185 +- duckdb-1.5.6/duckdb/R/storage-status.R | 25 duckdb-1.5.6/duckdb/R/storage.R | 177 -- duckdb-1.5.6/duckdb/R/test-fixtures.R | 5 duckdb-1.5.6/duckdb/R/the.R |only duckdb-1.5.6/duckdb/R/to_arrow_stream.R |only duckdb-1.5.6/duckdb/R/version.R | 2 duckdb-1.5.6/duckdb/R/zzz.R | 19 duckdb-1.5.6/duckdb/README.md | 121 + duckdb-1.5.6/duckdb/configure | 33 duckdb-1.5.6/duckdb/configure.win | 28 duckdb-1.5.6/duckdb/man/backend-duckdb.Rd | 11 duckdb-1.5.6/duckdb/man/default_conn.Rd | 10 duckdb-1.5.6/duckdb/man/duckdb-package.Rd | 2 duckdb-1.5.6/duckdb/man/duckdb.Rd | 135 - duckdb-1.5.6/duckdb/man/duckdb_connection-class.Rd | 36 duckdb-1.5.6/duckdb/man/duckdb_driver-class.Rd | 6 duckdb-1.5.6/duckdb/man/duckdb_error.Rd |only duckdb-1.5.6/duckdb/man/duckdb_memory.Rd |only duckdb-1.5.6/duckdb/man/duckdb_read_csv.Rd | 3 duckdb-1.5.6/duckdb/man/duckdb_register.Rd | 3 duckdb-1.5.6/duckdb/man/duckdb_register_arrow.Rd | 3 duckdb-1.5.6/duckdb/man/duckdb_result-class.Rd | 3 duckdb-1.5.6/duckdb/man/duckdb_result_arrow-class.Rd | 26 duckdb-1.5.6/duckdb/man/duckdb_storage.Rd | 143 - duckdb-1.5.6/duckdb/man/duckdb_types.Rd |only duckdb-1.5.6/duckdb/man/duckdb_types_arrow.Rd |only duckdb-1.5.6/duckdb/man/figures/DuckDB_Logo-horizontal-dark-mode.svg |only duckdb-1.5.6/duckdb/man/figures/DuckDB_Logo-horizontal.svg |only duckdb-1.5.6/duckdb/man/figures/logo-dark-mode.svg |only duckdb-1.5.6/duckdb/man/figures/logo.svg |only duckdb-1.5.6/duckdb/man/sql_query.Rd | 12 duckdb-1.5.6/duckdb/man/to_arrow_stream.Rd |only duckdb-1.5.6/duckdb/src/Makevars | 2 duckdb-1.5.6/duckdb/src/Makevars.win | 2 duckdb-1.5.6/duckdb/src/altrepdataframe_relation.cpp | 6 duckdb-1.5.6/duckdb/src/altrepdataframe_relation.dd | 23 duckdb-1.5.6/duckdb/src/arrow_export.cpp |only duckdb-1.5.6/duckdb/src/arrow_export.dd |only duckdb-1.5.6/duckdb/src/connection.cpp | 44 duckdb-1.5.6/duckdb/src/connection.dd | 23 duckdb-1.5.6/duckdb/src/convert.cpp | 6 duckdb-1.5.6/duckdb/src/convert.dd | 23 duckdb-1.5.6/duckdb/src/cpp11.cpp | 113 - duckdb-1.5.6/duckdb/src/cpp11.dd | 25 duckdb-1.5.6/duckdb/src/database.cpp | 17 duckdb-1.5.6/duckdb/src/database.dd | 23 duckdb-1.5.6/duckdb/src/duckdb-win.def |only duckdb-1.5.6/duckdb/src/duckdb.tar.xz |binary duckdb-1.5.6/duckdb/src/include/convert.hpp | 14 duckdb-1.5.6/duckdb/src/include/duckdb_types.hpp |only duckdb-1.5.6/duckdb/src/include/glue.mk | 2 duckdb-1.5.6/duckdb/src/include/r_progress_bar_display.hpp | 13 duckdb-1.5.6/duckdb/src/include/rapi.hpp | 98 + duckdb-1.5.6/duckdb/src/include/reltoaltrep.hpp | 19 duckdb-1.5.6/duckdb/src/include/signal.hpp | 15 duckdb-1.5.6/duckdb/src/include/typesr.hpp | 11 duckdb-1.5.6/duckdb/src/install.libs.R | 7 duckdb-1.5.6/duckdb/src/register.cpp | 21 duckdb-1.5.6/duckdb/src/register.dd | 23 duckdb-1.5.6/duckdb/src/relational.dd | 23 duckdb-1.5.6/duckdb/src/reltoaltrep.cpp | 144 + duckdb-1.5.6/duckdb/src/reltoaltrep.dd | 24 duckdb-1.5.6/duckdb/src/rfuns.cpp | 14 duckdb-1.5.6/duckdb/src/scan.cpp | 90 - duckdb-1.5.6/duckdb/src/scan.dd | 23 duckdb-1.5.6/duckdb/src/signal.cpp | 20 duckdb-1.5.6/duckdb/src/signal.dd | 23 duckdb-1.5.6/duckdb/src/statement.cpp | 360 +--- duckdb-1.5.6/duckdb/src/statement.dd | 23 duckdb-1.5.6/duckdb/src/transform.cpp | 37 duckdb-1.5.6/duckdb/src/transform.dd | 23 duckdb-1.5.6/duckdb/src/types.cpp | 32 duckdb-1.5.6/duckdb/src/types.dd | 23 duckdb-1.5.6/duckdb/src/utils.cpp | 72 duckdb-1.5.6/duckdb/src/utils.dd | 23 duckdb-1.5.6/duckdb/src/vendor |only duckdb-1.5.6/duckdb/tests/testthat/_snaps/backend-dbplyr__duckdb_connection.md | 29 duckdb-1.5.6/duckdb/tests/testthat/_snaps/dbplyr-version.md |only duckdb-1.5.6/duckdb/tests/testthat/_snaps/error-handling.md | 18 duckdb-1.5.6/duckdb/tests/testthat/_snaps/map.md | 8 duckdb-1.5.6/duckdb/tests/testthat/_snaps/relational.md | 36 duckdb-1.5.6/duckdb/tests/testthat/_snaps/storage-home.md | 2 duckdb-1.5.6/duckdb/tests/testthat/helper-DBItest.R | 45 duckdb-1.5.6/duckdb/tests/testthat/helper-arrow.R | 2 duckdb-1.5.6/duckdb/tests/testthat/helper-skip.R | 83 duckdb-1.5.6/duckdb/tests/testthat/helper-snapshot.R |only duckdb-1.5.6/duckdb/tests/testthat/helper-storage.R |only duckdb-1.5.6/duckdb/tests/testthat/setup.R | 10 duckdb-1.5.6/duckdb/tests/testthat/test-DBItest.R | 480 ++--- duckdb-1.5.6/duckdb/tests/testthat/test-array.R | 91 - duckdb-1.5.6/duckdb/tests/testthat/test-arrow.R | 86 duckdb-1.5.6/duckdb/tests/testthat/test-arrow_stream.R | 10 duckdb-1.5.6/duckdb/tests/testthat/test-backend-dbplyr__duckdb_connection.R | 670 ++++++- duckdb-1.5.6/duckdb/tests/testthat/test-bind.R | 70 duckdb-1.5.6/duckdb/tests/testthat/test-connect.R | 10 duckdb-1.5.6/duckdb/tests/testthat/test-date.R | 12 duckdb-1.5.6/duckdb/tests/testthat/test-dbBindArrow.R | 41 duckdb-1.5.6/duckdb/tests/testthat/test-dbFetchArrow.R | 300 +++ duckdb-1.5.6/duckdb/tests/testthat/test-dbIsValid.R |only duckdb-1.5.6/duckdb/tests/testthat/test-dbListFields.R |only duckdb-1.5.6/duckdb/tests/testthat/test-dbSendQueryArrow.R | 36 duckdb-1.5.6/duckdb/tests/testthat/test-dbplyr-version.R |only duckdb-1.5.6/duckdb/tests/testthat/test-dbwritetable.R | 7 duckdb-1.5.6/duckdb/tests/testthat/test-duckdb-extensions.R | 37 duckdb-1.5.6/duckdb/tests/testthat/test-error-handling.R | 118 + duckdb-1.5.6/duckdb/tests/testthat/test-explain.R | 11 duckdb-1.5.6/duckdb/tests/testthat/test-extension_path.R | 5 duckdb-1.5.6/duckdb/tests/testthat/test-extensions-libcxx.R | 22 duckdb-1.5.6/duckdb/tests/testthat/test-factor.R | 6 duckdb-1.5.6/duckdb/tests/testthat/test-fetch.R | 4 duckdb-1.5.6/duckdb/tests/testthat/test-fetch_arrow.R | 79 duckdb-1.5.6/duckdb/tests/testthat/test-flavor-package-name.R |only duckdb-1.5.6/duckdb/tests/testthat/test-helper-skip.R |only duckdb-1.5.6/duckdb/tests/testthat/test-instance-cache.R |only duckdb-1.5.6/duckdb/tests/testthat/test-instance-settings.R |only duckdb-1.5.6/duckdb/tests/testthat/test-integer64.R | 37 duckdb-1.5.6/duckdb/tests/testthat/test-interval.R | 44 duckdb-1.5.6/duckdb/tests/testthat/test-list.R | 7 duckdb-1.5.6/duckdb/tests/testthat/test-map.R | 412 +++- duckdb-1.5.6/duckdb/tests/testthat/test-multi_statement.R | 132 + duckdb-1.5.6/duckdb/tests/testthat/test-numeric.R | 5 duckdb-1.5.6/duckdb/tests/testthat/test-parquet.R | 25 duckdb-1.5.6/duckdb/tests/testthat/test-path_normalize.R |only duckdb-1.5.6/duckdb/tests/testthat/test-progress_display.R | 180 ++ duckdb-1.5.6/duckdb/tests/testthat/test-read.R | 124 - duckdb-1.5.6/duckdb/tests/testthat/test-readonly.R | 48 duckdb-1.5.6/duckdb/tests/testthat/test-register.R | 4 duckdb-1.5.6/duckdb/tests/testthat/test-register_arrow.R | 653 ++++++- duckdb-1.5.6/duckdb/tests/testthat/test-relational.R | 871 ++++++++-- duckdb-1.5.6/duckdb/tests/testthat/test-rfuns-minmax.R | 7 duckdb-1.5.6/duckdb/tests/testthat/test-rfuns-sum.R | 7 duckdb-1.5.6/duckdb/tests/testthat/test-scan.R | 78 duckdb-1.5.6/duckdb/tests/testthat/test-signal.R | 19 duckdb-1.5.6/duckdb/tests/testthat/test-sql.R | 89 - duckdb-1.5.6/duckdb/tests/testthat/test-storage-cli-e2e.R | 7 duckdb-1.5.6/duckdb/tests/testthat/test-storage-e2e.R | 32 duckdb-1.5.6/duckdb/tests/testthat/test-storage-home.R | 157 + duckdb-1.5.6/duckdb/tests/testthat/test-storage-message-once.R | 8 duckdb-1.5.6/duckdb/tests/testthat/test-storage-seams.R | 6 duckdb-1.5.6/duckdb/tests/testthat/test-storage-secret.R | 2 duckdb-1.5.6/duckdb/tests/testthat/test-storage-status.R | 8 duckdb-1.5.6/duckdb/tests/testthat/test-struct.R | 311 ++- duckdb-1.5.6/duckdb/tests/testthat/test-tbl__duckdb_connection.R | 52 duckdb-1.5.6/duckdb/tests/testthat/test-timestamp.R | 61 duckdb-1.5.6/duckdb/tests/testthat/test-timezone.R | 304 +++ duckdb-1.5.6/duckdb/tests/testthat/test-to_arrow_stream.R |only duckdb-1.5.6/duckdb/tests/testthat/test-types-rd.R |only duckdb-1.5.6/duckdb/tests/testthat/test-types.R | 107 + duckdb-1.5.6/duckdb/tests/testthat/test-variant.R | 51 duckdb-1.5.6/duckdb/tests/testthat/test-viewer.R | 59 duckdb-1.5.6/duckdb/tools |only 220 files changed, 8917 insertions(+), 3037 deletions(-)