Title: Mixed Temporal Vectors and Operations
Description: Flexible time classes for time series analysis and forecasting with
mixed temporal granularities. Supports linear and cyclical time
representations in discrete and continuous forms, with timezone support,
across multiple calendar systems including Gregorian and ISO week date
calendars. Time points are stored numerically relative to a chronon; an
atomic time granule defined by time units of a calendar. Calendrical
arithmetic enables conversion between time granules (e.g. days to months)
and calendar systems. Multi-unit arithmetic allows for temporal analysis
with other granules of common calendars (e.g. fortnights are 2-week units).
Time vectors of different granularities (e.g. monthly and quarterly) can be
combined in a single vector, making 'mixtime' ideal for data that changes
observation frequency over time or requires temporal reconciliation across
scales. The package is extensible, allowing users to define custom calendars
that build upon civil and astronomical time systems.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Cynthia Huang [ctb] ,
Rob Hyndman [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between mixtime versions 0.3.0 dated 2026-08-24 and 0.4.0 dated 2026-10-12
mixtime-0.3.0/mixtime/man/chronon_common.Rd |only mixtime-0.4.0/mixtime/DESCRIPTION | 20 mixtime-0.4.0/mixtime/MD5 | 151 +- mixtime-0.4.0/mixtime/NAMESPACE | 17 mixtime-0.4.0/mixtime/NEWS.md | 151 ++ mixtime-0.4.0/mixtime/R/00_classes.R | 2 mixtime-0.4.0/mixtime/R/00_utils.R | 4 mixtime-0.4.0/mixtime/R/01_calendar.R | 2 mixtime-0.4.0/mixtime/R/01_chronon_cardinality.R | 50 mixtime-0.4.0/mixtime/R/01_chronon_divmod.R | 3 mixtime-0.4.0/mixtime/R/01_chronon_format.R | 16 mixtime-0.4.0/mixtime/R/01_labels.R | 4 mixtime-0.4.0/mixtime/R/arithmetic.R | 315 ++++- mixtime-0.4.0/mixtime/R/cal0_time_civil.R | 97 + mixtime-0.4.0/mixtime/R/cal0_time_lunar.R | 6 mixtime-0.4.0/mixtime/R/cal0_time_solar.R | 8 mixtime-0.4.0/mixtime/R/cal_gregorian.R | 28 mixtime-0.4.0/mixtime/R/cal_isoweek.R | 27 mixtime-0.4.0/mixtime/R/cal_sym454.R | 32 mixtime-0.4.0/mixtime/R/chronon_common.R | 134 +- mixtime-0.4.0/mixtime/R/chronon_context.R |only mixtime-0.4.0/mixtime/R/chronon_convert.R | 140 +- mixtime-0.4.0/mixtime/R/clamp.R | 108 +- mixtime-0.4.0/mixtime/R/coerce.R | 13 mixtime-0.4.0/mixtime/R/compare.R | 533 ++++++++-- mixtime-0.4.0/mixtime/R/components.R | 6 mixtime-0.4.0/mixtime/R/compose.R | 14 mixtime-0.4.0/mixtime/R/duration.R | 14 mixtime-0.4.0/mixtime/R/format.R | 17 mixtime-0.4.0/mixtime/R/graph_dispatch.R | 113 +- mixtime-0.4.0/mixtime/R/mixtime-package.R | 7 mixtime-0.4.0/mixtime/R/mixtime.R | 52 mixtime-0.4.0/mixtime/R/parse.R | 20 mixtime-0.4.0/mixtime/R/predicates.R | 16 mixtime-0.4.0/mixtime/R/round.R | 29 mixtime-0.4.0/mixtime/R/sequence.R | 336 +++--- mixtime-0.4.0/mixtime/R/time.R | 110 -- mixtime-0.4.0/mixtime/R/time_chronon.R | 85 + mixtime-0.4.0/mixtime/R/time_granule.R | 36 mixtime-0.4.0/mixtime/R/time_parts.R | 34 mixtime-0.4.0/mixtime/R/timezone.R | 334 +++++- mixtime-0.4.0/mixtime/R/tsbl-compat.R | 18 mixtime-0.4.0/mixtime/R/vctrs.R | 17 mixtime-0.4.0/mixtime/README.md | 4 mixtime-0.4.0/mixtime/build/vignette.rds |binary mixtime-0.4.0/mixtime/inst/doc/invalid-time-points.R |only mixtime-0.4.0/mixtime/inst/doc/invalid-time-points.Rmd |only mixtime-0.4.0/mixtime/inst/doc/invalid-time-points.html |only mixtime-0.4.0/mixtime/inst/doc/time-format-strings.html | 22 mixtime-0.4.0/mixtime/man/allen-interval-algebra.Rd |only mixtime-0.4.0/mixtime/man/calendar_time_lunar.Rd | 5 mixtime-0.4.0/mixtime/man/chronon_cardinality_fixed.Rd | 18 mixtime-0.4.0/mixtime/man/chronon_glb.Rd |only mixtime-0.4.0/mixtime/man/class_mixtime.Rd | 2 mixtime-0.4.0/mixtime/man/duration.Rd | 4 mixtime-0.4.0/mixtime/man/mixtime-package.Rd | 17 mixtime-0.4.0/mixtime/man/mt_cyclical-compare.Rd | 6 mixtime-0.4.0/mixtime/man/mt_linear-compare.Rd | 21 mixtime-0.4.0/mixtime/man/new_mixtime.Rd | 2 mixtime-0.4.0/mixtime/man/new_time.Rd | 53 mixtime-0.4.0/mixtime/man/seq.mixtime.Rd | 53 mixtime-0.4.0/mixtime/man/time_chronon.Rd | 17 mixtime-0.4.0/mixtime/man/time_shift.Rd |only mixtime-0.4.0/mixtime/src/timezone-info.cpp | 185 +++ mixtime-0.4.0/mixtime/src/timezone-utils.h | 7 mixtime-0.4.0/mixtime/tests/testthat/test-allen.R |only mixtime-0.4.0/mixtime/tests/testthat/test-arithmetic.R | 415 +++++++ mixtime-0.4.0/mixtime/tests/testthat/test-chronon-cardinality-fixed.R | 25 mixtime-0.4.0/mixtime/tests/testthat/test-chronon-glb.R |only mixtime-0.4.0/mixtime/tests/testthat/test-compare-span-instant.R |only mixtime-0.4.0/mixtime/tests/testthat/test-divmod.R | 35 mixtime-0.4.0/mixtime/tests/testthat/test-duration.R | 57 + mixtime-0.4.0/mixtime/tests/testthat/test-format.R | 44 mixtime-0.4.0/mixtime/tests/testthat/test-graph_dispatch.R |only mixtime-0.4.0/mixtime/tests/testthat/test-math.R | 18 mixtime-0.4.0/mixtime/tests/testthat/test-mixtime.R | 90 + mixtime-0.4.0/mixtime/tests/testthat/test-nesting.R | 22 mixtime-0.4.0/mixtime/tests/testthat/test-parse.R | 113 ++ mixtime-0.4.0/mixtime/tests/testthat/test-seq.R | 312 +++++ mixtime-0.4.0/mixtime/tests/testthat/test-time-solar.R | 44 mixtime-0.4.0/mixtime/tests/testthat/test-timezones.R | 459 ++++++++ mixtime-0.4.0/mixtime/tests/testthat/test-tsibble.R | 13 mixtime-0.4.0/mixtime/vignettes/invalid-time-points.Rmd |only 83 files changed, 4246 insertions(+), 936 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson [aut, cre] ,
Evan Sergeant [aut],
Cord Heuer [ctb],
Ian Kopacka [ctb],
Klemens Fuchs [ctb],
Telmo Nunes [ctb],
Cord Heuer [ctb],
Jonathon Marshall [ctb],
Javier Sanchez [ctb],
Ron Thornton [ctb],
Jeno Reiczigel [ctb],
Jim Robison-Cox [ [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.99 dated 2026-10-01 and 3.0.0 dated 2026-10-12
epiR-2.0.99/epiR/inst/doc/epiR_descriptive_epi.R |only epiR-2.0.99/epiR/inst/doc/epiR_descriptive_epi.Rmd |only epiR-2.0.99/epiR/inst/doc/epiR_descriptive_epi.html |only epiR-2.0.99/epiR/inst/doc/epiR_diagnostic_tests.R |only epiR-2.0.99/epiR/inst/doc/epiR_diagnostic_tests.Rmd |only epiR-2.0.99/epiR/inst/doc/epiR_diagnostic_tests.html |only epiR-2.0.99/epiR/inst/doc/epiR_measures_of_assoc.R |only epiR-2.0.99/epiR/inst/doc/epiR_measures_of_assoc.Rmd |only epiR-2.0.99/epiR/inst/doc/epiR_measures_of_assoc.html |only epiR-2.0.99/epiR/inst/doc/epiR_sample_size.R |only epiR-2.0.99/epiR/inst/doc/epiR_sample_size.Rmd |only epiR-2.0.99/epiR/inst/doc/epiR_sample_size.html |only epiR-2.0.99/epiR/inst/doc/epiR_surveillance.R |only epiR-2.0.99/epiR/inst/doc/epiR_surveillance.Rmd |only epiR-2.0.99/epiR/inst/doc/epiR_surveillance.html |only epiR-2.0.99/epiR/vignettes/epiR_descriptive_epi.Rmd |only epiR-2.0.99/epiR/vignettes/epiR_descriptive_epi.bib |only epiR-2.0.99/epiR/vignettes/epiR_diagnostic_tests.Rmd |only epiR-2.0.99/epiR/vignettes/epiR_diagnostic_tests.bib |only epiR-2.0.99/epiR/vignettes/epiR_measures_of_assoc.Rmd |only epiR-2.0.99/epiR/vignettes/epiR_measures_of_assoc.bib |only epiR-2.0.99/epiR/vignettes/epiR_sample_size.Rmd |only epiR-2.0.99/epiR/vignettes/epiR_sample_size.bib |only epiR-2.0.99/epiR/vignettes/epiR_surveillance.Rmd |only epiR-2.0.99/epiR/vignettes/epiR_surveillance.bib |only epiR-3.0.0/epiR/DESCRIPTION | 8 - epiR-3.0.0/epiR/MD5 | 80 +++++++++------ epiR-3.0.0/epiR/NEWS | 16 +++ epiR-3.0.0/epiR/R/epi.sscc.R | 7 - epiR-3.0.0/epiR/build/vignette.rds |binary epiR-3.0.0/epiR/inst/doc/epiR_descriptive_epi-html.R |only epiR-3.0.0/epiR/inst/doc/epiR_descriptive_epi-html.Rmd |only epiR-3.0.0/epiR/inst/doc/epiR_descriptive_epi-html.html |only epiR-3.0.0/epiR/inst/doc/epiR_descriptive_epi-pdf.R |only epiR-3.0.0/epiR/inst/doc/epiR_descriptive_epi-pdf.Rmd |only epiR-3.0.0/epiR/inst/doc/epiR_descriptive_epi-pdf.pdf |only epiR-3.0.0/epiR/inst/doc/epiR_diagnostic_tests-html.R |only epiR-3.0.0/epiR/inst/doc/epiR_diagnostic_tests-html.Rmd |only epiR-3.0.0/epiR/inst/doc/epiR_diagnostic_tests-html.html |only epiR-3.0.0/epiR/inst/doc/epiR_diagnostic_tests-pdf.R |only epiR-3.0.0/epiR/inst/doc/epiR_diagnostic_tests-pdf.Rmd |only epiR-3.0.0/epiR/inst/doc/epiR_diagnostic_tests-pdf.pdf |only epiR-3.0.0/epiR/inst/doc/epiR_sample_size-html.R |only epiR-3.0.0/epiR/inst/doc/epiR_sample_size-html.Rmd |only epiR-3.0.0/epiR/inst/doc/epiR_sample_size-html.html |only epiR-3.0.0/epiR/inst/doc/epiR_sample_size-pdf.R |only epiR-3.0.0/epiR/inst/doc/epiR_sample_size-pdf.Rmd |only epiR-3.0.0/epiR/inst/doc/epiR_sample_size-pdf.pdf |only epiR-3.0.0/epiR/inst/doc/epiR_surveillance-html.R |only epiR-3.0.0/epiR/inst/doc/epiR_surveillance-html.Rmd |only epiR-3.0.0/epiR/inst/doc/epiR_surveillance-html.html |only epiR-3.0.0/epiR/inst/doc/epiR_surveillance-pdf.R |only epiR-3.0.0/epiR/inst/doc/epiR_surveillance-pdf.Rmd |only epiR-3.0.0/epiR/inst/doc/epiR_surveillance-pdf.pdf |only epiR-3.0.0/epiR/man/epi.iref.Rd | 8 - epiR-3.0.0/epiR/man/epi.sscc.Rd | 18 ++- epiR-3.0.0/epiR/vignettes/content |only epiR-3.0.0/epiR/vignettes/epiR_descriptive_epi-html.Rmd |only epiR-3.0.0/epiR/vignettes/epiR_descriptive_epi-pdf.Rmd |only epiR-3.0.0/epiR/vignettes/epiR_diagnostic_tests-html.Rmd |only epiR-3.0.0/epiR/vignettes/epiR_diagnostic_tests-pdf.Rmd |only epiR-3.0.0/epiR/vignettes/epiR_sample_size-html.Rmd |only epiR-3.0.0/epiR/vignettes/epiR_sample_size-pdf.Rmd |only epiR-3.0.0/epiR/vignettes/epiR_surveillance-html.Rmd |only epiR-3.0.0/epiR/vignettes/epiR_surveillance-pdf.Rmd |only epiR-3.0.0/epiR/vignettes/preamble.tex |only 66 files changed, 88 insertions(+), 49 deletions(-)
Title: 'Rcpp' Integration for 'CGAL'
Description: Creates a header only package to link to the 'CGAL'
(Computational Geometry Algorithms Library)
header files in 'Rcpp'. There are a variety of potential uses for
the software such as Hilbert sorting, K-D Tree nearest neighbors,
and convex hull algorithms. For more information about how to use the header files,
see the 'CGAL' documentation at <https://www.cgal.org>. Currently
downloads version 6.2.1 of the 'CGAL' header files.
Author: Eric Dunipace [aut, cre] ,
Tyler Morgan-Wall [ctb],
Michael Chirico [ctb],
The CGAL Project [cph]
Maintainer: Eric Dunipace <edunipace@mail.harvard.edu>
Diff between RcppCGAL versions 6.2.1 dated 2026-09-05 and 6.2.1.1 dated 2026-10-12
RcppCGAL-6.2.1.1/RcppCGAL/DESCRIPTION | 15 RcppCGAL-6.2.1.1/RcppCGAL/MD5 | 57 - RcppCGAL-6.2.1.1/RcppCGAL/NAMESPACE | 3 RcppCGAL-6.2.1.1/RcppCGAL/NEWS.md | 11 RcppCGAL-6.2.1.1/RcppCGAL/R/RcppCGAL-package.R | 6 RcppCGAL-6.2.1.1/RcppCGAL/R/cgal_check.R | 37 RcppCGAL-6.2.1.1/RcppCGAL/R/cgal_header_info.R |only RcppCGAL-6.2.1.1/RcppCGAL/R/downloader.R | 50 - RcppCGAL-6.2.1.1/RcppCGAL/R/pkg_state.R.in | 4 RcppCGAL-6.2.1.1/RcppCGAL/README.md | 8 RcppCGAL-6.2.1.1/RcppCGAL/inst/AUTHORS | 1 RcppCGAL-6.2.1.1/RcppCGAL/inst/WORDLIST | 2 RcppCGAL-6.2.1.1/RcppCGAL/inst/doc/Installation.Rmd | 4 RcppCGAL-6.2.1.1/RcppCGAL/inst/doc/Installation.html | 12 RcppCGAL-6.2.1.1/RcppCGAL/inst/include/CGAL_zip.tar.xz |binary RcppCGAL-6.2.1.1/RcppCGAL/inst/include/RcppCGAL |only RcppCGAL-6.2.1.1/RcppCGAL/man/RcppCGAL-package.Rd | 3 RcppCGAL-6.2.1.1/RcppCGAL/man/cgal_bundled_version.Rd |only RcppCGAL-6.2.1.1/RcppCGAL/man/cgal_header_info.Rd |only RcppCGAL-6.2.1.1/RcppCGAL/man/cgal_is_installed.Rd | 2 RcppCGAL-6.2.1.1/RcppCGAL/man/cgal_version.Rd | 11 RcppCGAL-6.2.1.1/RcppCGAL/man/figures |only RcppCGAL-6.2.1.1/RcppCGAL/man/set_cgal.Rd | 5 RcppCGAL-6.2.1.1/RcppCGAL/man/unset_cgal.Rd | 3 RcppCGAL-6.2.1.1/RcppCGAL/tools/config/configure.R | 26 RcppCGAL-6.2.1.1/RcppCGAL/tools/config/downloader_functions.R | 372 +++++----- RcppCGAL-6.2.1.1/RcppCGAL/tools/config/semantic_patches.R |only RcppCGAL-6.2.1.1/RcppCGAL/tools/cran-probe |only RcppCGAL-6.2.1.1/RcppCGAL/tools/patch_cgal_semantics.R |only RcppCGAL-6.2.1.1/RcppCGAL/vignettes/Installation.Rmd | 4 RcppCGAL-6.2.1/RcppCGAL/R/cgal_version.R |only 31 files changed, 375 insertions(+), 261 deletions(-)
Title: CAGED Microdata Download and Storage in 'DuckDB'
Description: Tools to download, parse, and store Brazilian CAGED
(Cadastro Geral de Empregados e Desempregados) microdata using 'DuckDB'.
Supports both legacy CAGED (pre-2020), Novo CAGED (2020+), and adjustment files,
enabling efficient local storage and analysis workflows.
Data is sourced from the HuggingFace repository
<https://huggingface.co/datasets/alexsandroprado/caged>.
Author: Alexsandro Prado [aut, cre]
Maintainer: Alexsandro Prado <alexsandro.prado@ufersa.edu.br>
Diff between datacaged versions 0.2.1 dated 2026-09-09 and 0.2.3 dated 2026-10-12
DESCRIPTION | 12 MD5 | 109 - NAMESPACE | 12 NEWS.md | 114 + R/adjustments.R | 52 R/availability.R | 24 R/database.R | 428 ++++--- R/datacaged.R | 64 - R/download.R | 38 R/layouts.R | 299 +---- R/parse.R | 59 - R/status.R | 48 R/utils.R | 20 build/vignette.rds |binary inst/CITATION | 4 inst/doc/casos_de_uso.R | 1086 +++++++++--------- inst/doc/casos_de_uso.html | 1826 +++++++++++++++---------------- inst/doc/introducao.R | 336 ++--- inst/doc/introducao.Rmd | 26 inst/doc/introducao.html | 1470 ++++++++++++------------ inst/doc/introduction.R | 336 ++--- inst/doc/introduction.Rmd | 26 inst/doc/introduction.html | 1468 ++++++++++++------------ inst/doc/pipeline-en.R | 590 +++++----- inst/doc/pipeline-en.Rmd | 34 inst/doc/pipeline-en.html | 1384 +++++++++++------------ inst/doc/pipeline.R | 590 +++++----- inst/doc/pipeline.Rmd | 33 inst/doc/pipeline.html | 1380 +++++++++++------------ inst/doc/use-cases.R | 1086 +++++++++--------- inst/doc/use-cases.html | 1818 +++++++++++++++--------------- inst/po/en@quot |only inst/po/pt_BR/LC_MESSAGES/R-datacaged.mo |binary man/caged_adjustments_load.Rd | 4 man/caged_download_layouts.Rd | 14 man/caged_to_duckdb.Rd | 14 man/caged_to_parquet.Rd | 24 man/caged_update.Rd | 10 man/datacaged-package.Rd | 19 po/R-datacaged.pot | 651 ++++++----- po/R-pt_BR.po | 513 ++++---- tests/testthat/setup.R |only tests/testthat/test-adjustments.R | 32 tests/testthat/test-availability.R | 7 tests/testthat/test-database.R | 45 tests/testthat/test-download.R | 36 tests/testthat/test-extdata.R | 2 tests/testthat/test-i18n.R |only tests/testthat/test-parse.R | 8 tests/testthat/test-pipelines.R | 81 + tests/testthat/test-status.R | 2 tests/testthat/test-update-parquet.R | 206 +++ tests/testthat/test-utils.R | 31 vignettes/introducao.Rmd | 26 vignettes/introduction.Rmd | 26 vignettes/pipeline-en.Rmd | 34 vignettes/pipeline.Rmd | 33 57 files changed, 8722 insertions(+), 7868 deletions(-)
Title: An Alternative Advanced Normalization Tools ('ANTs')
Description: Provides portable access from 'R' to biomedical image processing toolbox
'ANTs' by Avants et al. (2009) <doi:10.54294/uvnhin> via seamless
integration with the 'Python' implementation 'ANTsPy'. Allows biomedical
images to be processed in 'Python' and analyzed in 'R', and vice versa
via shared memory. See 'citation("rpyANTs")' for more reference information.
Author: Zhengjia Wang [aut, cre]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between rpyANTs versions 0.0.6 dated 2026-01-11 and 0.0.7 dated 2026-10-12
DESCRIPTION | 10 - MD5 | 58 +++---- NEWS.md | 7 R/aaa.R | 22 +- R/ants-plot.R | 127 +++++++++------- R/brain_extraction.R | 14 - R/generics-ANTsImage.R | 34 ++-- R/generics-ANTsTransform.R | 48 +++--- R/generics-ants.R | 4 R/motion_correction.R | 14 - R/preprocess_brain_image.R | 10 - R/registration.R | 106 +++++++------ R/resample.R | 12 - R/segmentation.R | 4 R/templates.R | 35 ++-- R/utils.R | 56 +++---- R/zzz.R | 44 ++--- README.md | 6 inst/rpyants/rpyants/registration/normalization.py | 164 +++++++++++++++++---- inst/rpyants/rpyants/registration/yael.py | 72 +++++++-- inst/rpyants/rpyants/utils/cache.py | 12 + man/ants_resample_image.Rd | 2 man/figures/README-load-image-into-r-1.png |binary man/py.Rd | 2 man/reexports.Rd | 4 tests/testthat.R | 4 tests/testthat/helper-toy.R |only tests/testthat/test-normalization.R |only tests/testthat/test-sanity.R | 4 tests/testthat/test-transform.R | 101 +++++++----- tests/testthat/test-yael-template-mapping.R |only tests/testthat/test-yael.R |only 32 files changed, 601 insertions(+), 375 deletions(-)
Title: Signal and Image Processing Toolbox for Analyzing Intracranial
Electroencephalography Data
Description: Implemented fast and memory-efficient Notch-filter,
Welch-periodogram, discrete wavelet spectrogram for minutes of
high-resolution signals, fast 3D convolution, image registration,
3D mesh manipulation; providing fundamental toolbox for intracranial
Electroencephalography (iEEG) pipelines.
Documentation and examples about 'RAVE' project are provided at
<https://rave.wiki>, and the paper by John F. Magnotti,
Zhengjia Wang, Michael S. Beauchamp (2020)
<doi:10.1016/j.neuroimage.2020.117341>; see 'citation("ravetools")' for
details.
Author: Zhengjia Wang [aut, cre] ,
John Magnotti [aut],
Michael Beauchamp [aut],
Trustees of the University of Pennsylvania [cph] ,
Karim Rahim [cph, ctb] ,
Thomas Possidente [cph, ctb] ,
Michael Prerau [cph, ctb] ,
Marcus Geelnard [ctb, cph] ,
Stefan Schlag [...truncated...]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ravetools versions 0.3.2 dated 2026-09-04 and 0.4.0 dated 2026-10-12
DESCRIPTION | 6 MD5 | 48 +- NAMESPACE | 5 NEWS.md | 17 R/RcppExports.R | 48 ++ R/imaging-ants-io.R | 9 R/imaging-intensity-n4.R |only R/imaging-registration-native.R | 128 ++++++- R/imaging-segment-gmm.R |only R/imaging-transform-apply.R |only R/vcg.R | 154 +++++++- inst/CITATION | 19 + inst/doc/mesh-geometry.html | 10 man/apply_transform3d.Rd | 10 man/apply_transform3d_volume.Rd |only man/bias_correction_n4.Rd |only man/register_volume3d.Rd | 68 +++ man/segment_volume_tissue_gmm.Rd |only man/vcg_decimate.Rd |only man/vcg_smooth.Rd | 50 ++ src/RcppExports.cpp | 204 ++++++++++- src/imaging_intensity_n4.cpp |only src/imaging_segment_gmm.cpp |only src/reg_apply.cpp |only src/reg_apply.h |only src/reg_syn.cpp | 47 +- src/vcgCommon.cpp | 615 ++++++++++++++++++++++++++++++---- src/vcgDecimate.cpp |only tests/testthat/test-intensity-n4.R |only tests/testthat/test-segment-gmm.R |only tests/testthat/test-transform-apply.R |only tests/testthat/test-vcg-decimate.R |only tests/testthat/test-vcg-mesh-io.R | 190 ++++++++++ 33 files changed, 1473 insertions(+), 155 deletions(-)
Title: Pedigree Validation Genetic Composition of Diploids & Polyploids
Description: Tools for pedigree quality control and genomic breed/line
composition estimation in diploid and polyploid breeding populations.
'BIGpopA' provides functions to check and correct common pedigree
errors, assign parentage from SNP genotype data using Mendelian error
rates, validate parent-offspring trios, and estimate genome-wide
breed or line composition using quadratic programming. Pedigree
validation and parentage assignment support any ploidy, using a
polysomic Mendelian test for even ploidy and a homozygosity-based
check for odd ploidy. Genotypes can be supplied as dosage tables, VCF
files, or 'PLINK' .ped files. For more details about the included
'breedTools' functions, see Funkhouser et al. (2017)
<doi:10.2527/tas2016.0003>.
Author: Josue Chinchilla-Vargas [cre, aut],
Alexander Sandercock [aut],
University of Florida [cph]
Maintainer: Josue Chinchilla-Vargas <josue.chinchilla@ufl.edu>
Diff between BIGpopA versions 2.1.0 dated 2026-10-05 and 2.2.0 dated 2026-10-12
DESCRIPTION | 6 MD5 | 45 + NAMESPACE | 1 NEWS.md | 15 R/allele_freq_poly.R | 2 R/assign_composition_line.R |only R/find_parentage.R | 442 ++++++++++++----- R/ped_to_dosage.R | 102 +-- R/utils.R | 148 ++++- R/validate_pedigree.R | 314 ++++++------ R/vcf_to_dosage.R | 146 ++--- README.md | 5 inst/doc/BIGpopA.R | 29 - inst/doc/BIGpopA.Rmd | 70 ++ inst/doc/BIGpopA.html | 311 +++++++---- man/assign_composition_line.Rd |only man/find_parentage.Rd | 49 + man/ped_to_dosage.Rd | 2 man/validate_pedigree.Rd | 55 +- tests/testthat/test-assign_composition_line.R |only tests/testthat/test-find_parentage.R | 148 +++++ tests/testthat/test-founders_input.R |only tests/testthat/test-hard.R |only tests/testthat/test-validate_pedigree.R | 88 ++- tests/testthat/test-validate_pedigree_marker_summary.R |only tests/testthat/test-validate_pedigree_marker_trio.R |only vignettes/BIGpopA.Rmd | 70 ++ 27 files changed, 1365 insertions(+), 683 deletions(-)
Title: Non-Parametric Trend Tests and Change-Point Detection
Description: The analysis of environmental data often requires
the detection of trends and change-points.
This package includes tests for trend detection
(Cox-Stuart Trend Test, Mann-Kendall Trend Test,
(correlated) Hirsch-Slack Test,
partial Mann-Kendall Trend Test, multivariate (multisite)
Mann-Kendall Trend Test, (Seasonal) Sen's slope,
partial Pearson and Spearman correlation trend test),
change-point detection (Lanzante's test procedures,
Pettitt's test, Buishand Range Test,
Buishand U Test, Standard Normal Homogeinity Test),
detection of non-randomness (Wallis-Moore Phase Frequency Test,
Bartels rank von Neumann's ratio test, Wald-Wolfowitz Test)
and the two sample Robust Rank-Order Distributional Test.
Author: Thorsten Pohlert [aut, cre]
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between trend versions 1.1.8 dated 2026-09-03 and 1.1.9 dated 2026-10-12
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/itam.R | 10 ++++++---- inst/NEWS.Rd | 8 ++++++++ inst/doc/trend.pdf |binary 5 files changed, 23 insertions(+), 13 deletions(-)
Title: Transparent and Assisted Linear Modeling Engine
Description: Unified estimation, diagnostics, and reporting for ordinary least
squares (OLS) regression, ANOVA/t-tests, logistic regression, panel data
(fixed/random effects with Hausman test), instrumental variables (2SLS with
weak instrument diagnostics), and difference-in-differences. Designed for
applied researchers in social sciences with integrated "Methodological Customs"
that audit assumptions and provide literature references. All methods
implemented in pure base R without external dependencies beyond stats and
graphics packages.
Author: Manuel Soto-Perez [aut, cre]
Maintainer: Manuel Soto-Perez <msoto@up.edu.mx>
Diff between OLSengine versions 1.2.0 dated 2026-09-18 and 1.2.1 dated 2026-10-12
DESCRIPTION | 6 - MD5 | 20 ++-- NAMESPACE | 2 NEWS.md | 58 +++++++++++++ R/OLS_engine.R | 176 ++++++++++++++++++++++++++++++---------- README.md | 13 +- inst/doc/vignette_tutorial.R | 5 - inst/doc/vignette_tutorial.Rmd | 9 +- inst/doc/vignette_tutorial.html | 53 +++++++----- man/paper_engine.Rd | 38 ++++++-- vignettes/vignette_tutorial.Rmd | 9 +- 11 files changed, 284 insertions(+), 105 deletions(-)
Title: Interactive 3D Visualization of Large Cayley Graphs via Vulkan
Description: Provides interactive 3D visualization for large-scale Cayley graphs.
Specifically designed for analyzing state spaces of the 'TopSpin' puzzle.
Leverages the 'Datoviz' library and Vulkan-based GPU rendering for smooth
real-time exploration of large graphs and complex state transitions.
Implements efficient coordinate mapping for high-dimensional permutation
groups, allowing users to visualize the connectivity and structural
properties of the puzzle's state space. The rendering engine provides
high-performance visuals and interactive camera controls, making it suitable
for mathematical analysis of group-theoretic puzzles within the R
environment.
Author: Yuri Baramykov [aut, cre] ,
Cyrille Rossant [ctb, cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between cgvR versions 0.1.2 dated 2026-05-11 and 0.1.3 dated 2026-10-12
DESCRIPTION | 6 +- MD5 | 27 ++++++---- NAMESPACE | 1 NEWS.md | 4 + R/graph_render.R | 18 +++++++ configure.win | 10 +++ inst/examples/demo_cube3_sheets.R |only inst/examples/demo_cube3_solutions.R |only inst/examples/demo_path_coords.R |only inst/examples/demo_path_in_graph.R |only man/cgv_set_edge_colors.Rd |only src/cgvR.h | 1 src/cgv_graph.c | 30 +++++++++++ src/cgv_stub.c | 88 +++++++++++++++++++---------------- src/datoviz/renderer.cpp | 1 src/datoviz/scene/atlas.cpp | 1 src/init.c | 1 17 files changed, 134 insertions(+), 54 deletions(-)
Title: Visualization 2D of Binary Classification Models
Description: Visual contour and 2D point and contour plots for binary classification modeling under algorithms such as 'glm', 'rf', 'gbm', 'nnet' and 'svm', presented over two dimensions generated by 'famd' and 'mca' methods. Package 'FactoMineR' for multivariate reduction functions and package 'MBA' for interpolation functions are used. The package can be used to visualize the discriminant power of input variables and algorithmic modeling, explore outliers, compare algorithm behaviour, etc. It has been created initially for teaching purposes, but it has also many practical uses under the 'XAI' paradigm.
Author: Javier Portela [aut, cre]
Maintainer: Javier Portela <javipgm@gmail.com>
Diff between visualpred versions 0.1.2 dated 2025-10-19 and 0.1.3 dated 2026-10-12
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 5 +++-- NEWS.md | 6 +++++- R/famdcontour.R | 2 +- R/mcacontour.R | 2 +- R/mcacontourjitter.R | 2 +- R/mcamodelo.R | 18 +++++++++++++++--- inst/doc/Basic_example.html | 2 +- man/mcamodelobis.Rd | 2 +- 10 files changed, 41 insertions(+), 24 deletions(-)
Title: Spatial Environmental Risk Assessment Through Food Webs
Description: A workflow for spatially explicit environmental risk assessment
of contaminated sites: habitat, food web, dispersal, exposure and risk.
Starting from a raster of soil contamination, the package builds habitat
layers for a set of species, organises them in a directed acyclic graph
representing a food web, and propagates the flow of elements (e.g., food,
energy, contaminants) along its links. It also provides soil interpolation
by kriging, dispersal by kernel convolution or by circuit theory (through
the optional 'Julia' package 'Omniscape'), land cover retrieval for France
('OCS-GE') and Europe ('EUNIS'), and Bayesian calibration of transfer
models with 'Stan'.
Author: Virgile Baudrot [aut, cre, cph],
Lea Bariod [ctb],
Clementine Fritsch [ctb, cph],
Renaud Scheifler [ctb]
Maintainer: Virgile Baudrot <virgile.baudrot@qonfluens.com>
Diff between spacemodR versions 0.1.3 dated 2026-02-20 and 0.3.5 dated 2026-10-12
spacemodR-0.1.3/spacemodR/R/intakes.R |only spacemodR-0.1.3/spacemodR/inst/extdata/ground_concentration_pb_compressed.tif |only spacemodR-0.1.3/spacemodR/inst/extdata/ground_concentration_zn_compressed.tif |only spacemodR-0.1.3/spacemodR/man/intake.Rd |only spacemodR-0.3.5/spacemodR/DESCRIPTION | 54 spacemodR-0.3.5/spacemodR/LICENSE | 2 spacemodR-0.3.5/spacemodR/MD5 | 144 + spacemodR-0.3.5/spacemodR/NAMESPACE | 44 spacemodR-0.3.5/spacemodR/NEWS.md |only spacemodR-0.3.5/spacemodR/R/data.R | 430 +++++ spacemodR-0.3.5/spacemodR/R/data_eunis.R |only spacemodR-0.3.5/spacemodR/R/data_gbif.R |only spacemodR-0.3.5/spacemodR/R/data_ocsge.R | 471 +++++ spacemodR-0.3.5/spacemodR/R/data_soil.R |only spacemodR-0.3.5/spacemodR/R/departements.R | 11 spacemodR-0.3.5/spacemodR/R/dispersal.R | 120 - spacemodR-0.3.5/spacemodR/R/flux.R |only spacemodR-0.3.5/spacemodR/R/habitat.R | 324 +++ spacemodR-0.3.5/spacemodR/R/kriging.R |only spacemodR-0.3.5/spacemodR/R/soil_interpolation.R |only spacemodR-0.3.5/spacemodR/R/spacemodR-internal.R | 22 spacemodR-0.3.5/spacemodR/R/stan.R |only spacemodR-0.3.5/spacemodR/R/stanmodels.R |only spacemodR-0.3.5/spacemodR/R/transfer.R | 32 spacemodR-0.3.5/spacemodR/R/trophic.R | 96 - spacemodR-0.3.5/spacemodR/README.md | 216 ++ spacemodR-0.3.5/spacemodR/build/vignette.rds |binary spacemodR-0.3.5/spacemodR/configure |only spacemodR-0.3.5/spacemodR/configure.win |only spacemodR-0.3.5/spacemodR/data/DBFunc_BirdFuncDat.rda |only spacemodR-0.3.5/spacemodR/data/DBFunc_MamFuncDat.rda |only spacemodR-0.3.5/spacemodR/data/FmrBT.rda |only spacemodR-0.3.5/spacemodR/data/SSD_ecoSSL_all.rda |only spacemodR-0.3.5/spacemodR/data/bappet_cd.rda |only spacemodR-0.3.5/spacemodR/data/earthworm_cd.rda |only spacemodR-0.3.5/spacemodR/data/eunis_species_dict.rda |only spacemodR-0.3.5/spacemodR/data/ocsge_species_dict.rda |binary spacemodR-0.3.5/spacemodR/data/ocsge_us_metaleurop.rda |only spacemodR-0.3.5/spacemodR/data/ref_eunis.rda |only spacemodR-0.3.5/spacemodR/data/ref_ocsge_eunis.rda |only spacemodR-0.3.5/spacemodR/data/soil_metaleurop.rda |only spacemodR-0.3.5/spacemodR/inst/doc/Getting_Started_EN.R |only spacemodR-0.3.5/spacemodR/inst/doc/Getting_Started_EN.Rmd |only spacemodR-0.3.5/spacemodR/inst/doc/Getting_Started_EN.html |only spacemodR-0.3.5/spacemodR/inst/doc/Getting_Started_FR.R |only spacemodR-0.3.5/spacemodR/inst/doc/Getting_Started_FR.Rmd |only spacemodR-0.3.5/spacemodR/inst/doc/Getting_Started_FR.html |only spacemodR-0.3.5/spacemodR/inst/doc/Tutorial.R | 186 -- spacemodR-0.3.5/spacemodR/inst/doc/Tutorial.Rmd | 450 ++--- spacemodR-0.3.5/spacemodR/inst/doc/Tutorial.html | 836 ++++------ spacemodR-0.3.5/spacemodR/inst/include |only spacemodR-0.3.5/spacemodR/inst/stan |only spacemodR-0.3.5/spacemodR/man/DBFunc_BirdFuncDat.Rd |only spacemodR-0.3.5/spacemodR/man/DBFunc_MamFuncDat.Rd |only spacemodR-0.3.5/spacemodR/man/FmrBT.Rd |only spacemodR-0.3.5/spacemodR/man/SSD_ecoSSL_all.Rd |only spacemodR-0.3.5/spacemodR/man/add_flux.Rd |only spacemodR-0.3.5/spacemodR/man/add_habitat.Rd | 51 spacemodR-0.3.5/spacemodR/man/add_nohabitat.Rd | 15 spacemodR-0.3.5/spacemodR/man/apply_flux.Rd |only spacemodR-0.3.5/spacemodR/man/bappet_cd.Rd |only spacemodR-0.3.5/spacemodR/man/calibrate_direct.Rd |only spacemodR-0.3.5/spacemodR/man/calibrate_simple.Rd |only spacemodR-0.3.5/spacemodR/man/calibrate_trophic.Rd |only spacemodR-0.3.5/spacemodR/man/cv_soil.Rd |only spacemodR-0.3.5/spacemodR/man/earthworm_cd.Rd |only spacemodR-0.3.5/spacemodR/man/eunis_species_dict.Rd |only spacemodR-0.3.5/spacemodR/man/fit_soil_variogram.Rd |only spacemodR-0.3.5/spacemodR/man/flux.Rd | 30 spacemodR-0.3.5/spacemodR/man/get_departements_for_roi.Rd | 2 spacemodR-0.3.5/spacemodR/man/get_eunis_data.Rd |only spacemodR-0.3.5/spacemodR/man/get_gbif_data.Rd |only spacemodR-0.3.5/spacemodR/man/get_ocsge.Rd |only spacemodR-0.3.5/spacemodR/man/get_ocsge_data_fgb.Rd | 3 spacemodR-0.3.5/spacemodR/man/get_ocsge_data_ign.Rd |only spacemodR-0.3.5/spacemodR/man/habitat.Rd | 21 spacemodR-0.3.5/spacemodR/man/habitat_raster.Rd | 79 spacemodR-0.3.5/spacemodR/man/join_ocsge_species.Rd |only spacemodR-0.3.5/spacemodR/man/kernel_smooth_soil.Rd |only spacemodR-0.3.5/spacemodR/man/krige_soil.Rd |only spacemodR-0.3.5/spacemodR/man/ocsge_species_dict.Rd | 82 spacemodR-0.3.5/spacemodR/man/ocsge_us_metaleurop.Rd |only spacemodR-0.3.5/spacemodR/man/plot.habitat.Rd |only spacemodR-0.3.5/spacemodR/man/plot.soil_vgm.Rd |only spacemodR-0.3.5/spacemodR/man/plot.trophic_tbl.Rd | 22 spacemodR-0.3.5/spacemodR/man/plot_species_habitat.Rd |only spacemodR-0.3.5/spacemodR/man/ref_eunis.Rd |only spacemodR-0.3.5/spacemodR/man/ref_ocsge_eunis.Rd |only spacemodR-0.3.5/spacemodR/man/soil_grid.Rd |only spacemodR-0.3.5/spacemodR/man/soil_metaleurop.Rd |only spacemodR-0.3.5/spacemodR/man/soil_variogram.Rd |only spacemodR-0.3.5/spacemodR/man/soil_vgm.Rd |only spacemodR-0.3.5/spacemodR/man/source_covariates.Rd |only spacemodR-0.3.5/spacemodR/man/spacemodR-package.Rd |only spacemodR-0.3.5/spacemodR/man/summary.soil_cv.Rd |only spacemodR-0.3.5/spacemodR/man/transfer.Rd | 10 spacemodR-0.3.5/spacemodR/src |only spacemodR-0.3.5/spacemodR/tests/testthat/test-eunis.R |only spacemodR-0.3.5/spacemodR/tests/testthat/test-gbif.R |only spacemodR-0.3.5/spacemodR/tests/testthat/test-habitat.R | 253 +++ spacemodR-0.3.5/spacemodR/tests/testthat/test-kriging.R |only spacemodR-0.3.5/spacemodR/tests/testthat/test-ocsge.R | 111 + spacemodR-0.3.5/spacemodR/vignettes/Getting_Started_EN.Rmd |only spacemodR-0.3.5/spacemodR/vignettes/Getting_Started_FR.Rmd |only spacemodR-0.3.5/spacemodR/vignettes/Tutorial.Rmd | 450 ++--- 105 files changed, 3269 insertions(+), 1298 deletions(-)
Title: Tools to Evaluate Disclosure Risk
Description: Functions and tools for calculating disclosure risk measures. This includes
record-level measures primarily using exhaustive tabulation, as well as
file-level measures using a loglinear model.
Author: John Riddles [aut, cre],
Westat [cph]
Maintainer: John Riddles <JohnRiddles@westat.com>
This is a re-admission after prior archival of version 1.0.1 dated 2020-12-17
Diff between SDCNway versions 1.0.1 dated 2020-12-17 and 1.1.1 dated 2026-10-12
SDCNway-1.0.1/SDCNway/build/vignette.rds |only SDCNway-1.0.1/SDCNway/inst/doc |only SDCNway-1.0.1/SDCNway/vignettes |only SDCNway-1.1.1/SDCNway/DESCRIPTION | 39 - SDCNway-1.1.1/SDCNway/MD5 | 23 SDCNway-1.1.1/SDCNway/NAMESPACE | 3 SDCNway-1.1.1/SDCNway/R/loglinear.R | 649 +++++++++++++++++++++--- SDCNway-1.1.1/SDCNway/R/risk_measures.R | 2 SDCNway-1.1.1/SDCNway/R/sdc_extabs.R | 35 - SDCNway-1.1.1/SDCNway/build/partial.rdb |binary SDCNway-1.1.1/SDCNway/inst/REFERENCES.bib | 7 SDCNway-1.1.1/SDCNway/man/sdc_extabs.Rd | 2 SDCNway-1.1.1/SDCNway/man/sdc_loglinear.Rd | 4 SDCNway-1.1.1/SDCNway/man/sdc_loglinear_iter.Rd |only 14 files changed, 626 insertions(+), 138 deletions(-)
Title: Regularised and Information-Theoretic Sufficient Dimension
Reduction
Description: Implements covariance-stabilised sufficient dimension reduction
for continuous responses, with an additional sparse engine for continuous,
categorical, and right-censored survival responses and information-theoretic
structural dimension
selection. Supported methods include sliced inverse regression, sliced
average variance estimation, directional regression, and principal Hessian
directions. Sample, ridge, Oracle Approximating Shrinkage, Ledoit-Wolf, and
Maximum Entropy Covariance (MEC) estimators are provided alongside
prediction, resampling, simulation, and diagnostic utilities. The
sufficient dimension reduction
methods build on Li (1991) <doi:10.1080/01621459.1991.10475035>, Li (1992)
<doi:10.1080/01621459.1992.10476258>, and Li and Wang (2007)
<doi:10.1198/016214507000000536>. Covariance shrinkage follows Olorede and
Yahya (2019) <doi:10.48550/arXiv.1909.13017>, Ledoit and
Wolf (2004) <doi:10.1016/S0047-259X(03)00096-4> and Chen et al. (2010)
<doi: [...truncated...]
Author: Kabir Olorede [aut, cre]
Maintainer: Kabir Olorede <kabirolorede@gmail.com>
Diff between risdr versions 0.3.1 dated 2026-07-28 and 0.4.0 dated 2026-10-12
DESCRIPTION | 18 ++-- MD5 | 52 +++++++++++-- NAMESPACE | 21 +++++ NEWS.md | 26 ++++++ R/risdr-package.R | 9 +- R/thesis_engine.R |only R/thesis_prediction.R |only README.md | 74 +++++++++++++++---- build/vignette.rds |binary inst/CITATION | 11 ++ inst/WORDLIST | 29 +++---- inst/doc/sparse-survival.R |only inst/doc/sparse-survival.Rmd |only inst/doc/sparse-survival.html |only man/C1F.Rd |only man/compute_ic.Rd |only man/compute_ic_values.Rd |only man/compute_penalty_weights.Rd |only man/dual_pca_scores.Rd |only man/fit_risdr_dual.Rd |only man/fit_risdr_sparse.Rd |only man/fit_risdr_sparse_realdata.Rd |only man/fit_sparse_grid.Rd |only man/predict.risdr_sparse.Rd |only man/print.risdr_dual.Rd |only man/print.risdr_sparse.Rd |only man/print.risdr_sparse_realdata.Rd |only man/print.summary.risdr_sparse.Rd |only man/risdr-package.Rd | 9 +- man/slice_response.Rd |only man/summarise_sparsity.Rd |only man/summary.risdr_dual.Rd |only man/summary.risdr_sparse.Rd |only man/weighted_soft_threshold.Rd |only man/weighted_sparsify_directions.Rd |only tests/testthat/helper-thesis-coverage.R |only tests/testthat/test-thesis-covariance-criteria.R |only tests/testthat/test-thesis-dual-selected-d-ranking.R |only tests/testthat/test-thesis-interface-contracts.R |only tests/testthat/test-thesis-prediction-contracts.R |only tests/testthat/test-thesis-prediction.R |only tests/testthat/test-thesis-realdata-wrapper.R |only tests/testthat/test-thesis-survival-unified-core.R |only vignettes/sparse-survival.Rmd |only 44 files changed, 194 insertions(+), 55 deletions(-)
Title: Faithful and Scalable MARCXML Parsing
Description: Parses Machine-Readable Cataloging ('MARC 21') XML
<https://www.loc.gov/standards/marcxml/> into a canonical tidy long
representation while preserving leaders, control fields, data fields,
indicators, repeated fields, repeated subfields, and source order.
Provides in-memory reading, bounded-memory conversion to 'Parquet',
and reconstruction of MARCXML from canonical data.
Supports structural diagnostics for in-memory and 'Arrow'-backed
representations, optional recovery from malformed MARC records,
and local parallel processing.
Author: Lorenzo Isella [aut, cre]
Maintainer: Lorenzo Isella <lorenzo.isella@gmail.com>
Diff between marcxmlr versions 0.3.1 dated 2026-09-28 and 0.4.0 dated 2026-10-12
DESCRIPTION | 21 MD5 | 35 NEWS.md | 16 R/arrow-writer.R | 175 +-- R/canonical-diagnostics.R | 189 +++ R/marc-recovery.R |only R/marcxml-to-parquet.R | 346 +++++- R/native-parser.R | 125 ++ R/read-marcxml.R | 47 README.md | 1265 ++++++++-------------- build |only inst/doc |only inst/extdata/orwell-marcxml.xml |only man/diagnose_canonical.Rd | 23 man/marcxml_to_parquet.Rd | 23 man/read_marcxml.Rd | 28 src/marcxml-native.c | 1018 +++++++++++++++++ tests/testthat/test-canonical-diagnostics-arrow.R |only tests/testthat/test-marc-recovery.R |only tests/testthat/test-parquet.R | 22 vignettes |only 21 files changed, 2425 insertions(+), 908 deletions(-)
Title: File IO for Intracranial Electroencephalography
Description: Integrated toolbox supporting common file formats used for intracranial
Electroencephalography (iEEG) and deep-brain stimulation (DBS) study.
Author: Zhengjia Wang [aut, cre]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ieegio versions 0.1.2 dated 2026-09-03 and 0.1.3 dated 2026-10-12
DESCRIPTION | 6 - MD5 | 13 +-- NEWS.md | 6 + R/aaa-generics-streamlines.R | 2 R/utils-vol2surf.R | 134 ++++++++++++++++++++++++++------ man/volume_to_surface.Rd | 35 +++++++- tests/testthat/test-volume-to-surface.R |only tests/testthat/test-vtk-polys.R | 3 8 files changed, 166 insertions(+), 33 deletions(-)
Title: Standard Dataset Manager for Observational Medical Outcomes
Partnership Common Data Model Sample Datasets
Description: Facilitates access to sample datasets from the 'EunomiaDatasets' repository (<https://github.com/ohdsi/EunomiaDatasets>).
Author: Anthony Sena [aut, cre],
Frank DeFalco [aut],
Martijn Schuemie [aut],
Natthawut Adulyanukosol [aut],
Star Liu [aut],
Adam Black [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Anthony Sena <sena@ohdsi.org>
Diff between Eunomia versions 2.1.0 dated 2025-09-15 and 2.2.0 dated 2026-10-12
DESCRIPTION | 24 ++++---- MD5 | 32 +++++------ NAMESPACE | 12 ++-- NEWS.md | 11 +++ R/Cohorts.R | 2 R/Connection.R | 14 ++-- R/Eunomia.R | 2 R/EunomiaData.R | 21 +++++-- README.md | 2 man/Eunomia-package.Rd | 6 +- man/downloadEunomiaData.Rd | 4 - man/extractLoadData.Rd | 4 - man/getDatabaseFile.Rd | 16 ++--- man/getEunomiaConnectionDetails.Rd | 6 +- man/loadDataFiles.Rd | 4 - tests/testthat/test-EunomiaData.R | 107 +++++++++++++++++++++++++++++++++++++ tests/testthat/test-basic.R | 12 ++-- 17 files changed, 206 insertions(+), 73 deletions(-)
Title: Probability Distributions with Certain or Uncertain Parameters
Description: Represents probability distributions with fixed or potentially
uncertain parameters, with tools to discretise, convolve, sample from and
summarise them.
Author: Sebastian Funk [aut, cre] ,
James M. Azam [aut] ,
Sam Abbott [aut]
Maintainer: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
Diff between distspec versions 0.2.0 dated 2026-09-01 and 0.3.0 dated 2026-10-12
DESCRIPTION | 6 MD5 | 47 ++-- NAMESPACE | 22 ++ NEWS.md | 14 + R/beta.R | 4 R/discretise.R | 14 - R/dist_spec.R | 358 ++++++++++++++++++++++++++++++++++++- R/distribution.R | 48 ++++ R/exp.R | 7 R/gamma.R | 7 R/lognormal.R | 7 R/normal.R | 7 R/weibull.R | 7 build/partial.rdb |binary build/vignette.rds |binary inst/doc/distspec.html | 13 - man/bound_dist.Rd | 14 - man/cdf.Rd |only man/cdf_bounded.Rd |only man/dist_cdf.Rd |only man/dist_quantile.Rd |only man/draw_components.Rd |only man/log_upper_bound.Rd |only man/quantile.dist_spec.Rd |only man/quantile_bounded.Rd |only man/sample_bounded.Rd |only man/sample_dist.Rd | 19 + tests/testthat/test-distribution.R |only tests/testthat/test-quantile.R |only tests/testthat/test-sample_dist.R | 155 ++++++++++++++++ 30 files changed, 681 insertions(+), 68 deletions(-)
Title: Geometric Analysis of Configurations in High-Dimensional Spaces
Description: Computes Average Membership Degree (AMD) from soft-membership
matrices and constructs AMD curves across candidate configuration counts.
The current curve backend uses repeated fuzzy c-means fits while keeping
the AMD definition, membership estimation, curve construction, and final
assignment as separate operations. Fitted memberships, convergence
diagnostics, preprocessing transformations, seeds, row maps, and
process-level reproducibility links are retained. The package reports
numerical curve features but leaves their scientific interpretation to an
explicitly justified analysis. The method was introduced by Mendoza and
Araújo (2022) <doi:10.1111/ecog.06289>.
Author: Manuel Mendoza [aut, cre]
Maintainer: Manuel Mendoza <mmendoza@mncn.csic.es>
Diff between AMDconfigurations versions 0.1.0 dated 2026-03-17 and 0.2.1 dated 2026-10-12
AMDconfigurations-0.1.0/AMDconfigurations/R/estimate_sigma_equivalent.R |only AMDconfigurations-0.1.0/AMDconfigurations/R/plot_amd_sigma.R |only AMDconfigurations-0.1.0/AMDconfigurations/R/print_amd_sigma.R |only AMDconfigurations-0.1.0/AMDconfigurations/R/summary_amd_sigma.R |only AMDconfigurations-0.1.0/AMDconfigurations/R/summary_sigma_equivalent.R |only AMDconfigurations-0.1.0/AMDconfigurations/man/estimate_sigma_equivalent.Rd |only AMDconfigurations-0.1.0/AMDconfigurations/man/plot.amd_sigma.Rd |only AMDconfigurations-0.1.0/AMDconfigurations/man/print.amd_sigma.Rd |only AMDconfigurations-0.1.0/AMDconfigurations/man/summary.amd_sigma.Rd |only AMDconfigurations-0.1.0/AMDconfigurations/man/summary.sigma_equivalent.Rd |only AMDconfigurations-0.1.0/AMDconfigurations/tests/testthat/test_estimate_sigma_equivalent.R |only AMDconfigurations-0.2.1/AMDconfigurations/DESCRIPTION | 36 AMDconfigurations-0.2.1/AMDconfigurations/MD5 | 113 - AMDconfigurations-0.2.1/AMDconfigurations/NAMESPACE | 39 AMDconfigurations-0.2.1/AMDconfigurations/NEWS.md |only AMDconfigurations-0.2.1/AMDconfigurations/R/AMDconfigurations-package.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/Fulldata.R | 27 AMDconfigurations-0.2.1/AMDconfigurations/R/Transcdata_small.R | 24 AMDconfigurations-0.2.1/AMDconfigurations/R/amd_curve_schema.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/amd_predictor.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/amd_predictor_advanced_features.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/amd_predictor_candidate_features.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/amd_predictor_curve_features.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/amd_predictor_data_features.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/amd_predictor_partition_features.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/amd_reproducibility_manifest.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/amd_score.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/assign_configurations.R | 374 ++- AMDconfigurations-0.2.1/AMDconfigurations/R/compute_amd_curve.R | 426 +++- AMDconfigurations-0.2.1/AMDconfigurations/R/diagnose_amd.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/imports.R | 8 AMDconfigurations-0.2.1/AMDconfigurations/R/plot_AMD().R | 151 - AMDconfigurations-0.2.1/AMDconfigurations/R/print.amd_curve().R | 50 AMDconfigurations-0.2.1/AMDconfigurations/R/summary.amd_curve().R | 72 AMDconfigurations-0.2.1/AMDconfigurations/R/utils_rng.R |only AMDconfigurations-0.2.1/AMDconfigurations/R/zzz_globals.R | 4 AMDconfigurations-0.2.1/AMDconfigurations/README.md | 311 +- AMDconfigurations-0.2.1/AMDconfigurations/build/partial.rdb |only AMDconfigurations-0.2.1/AMDconfigurations/build/vignette.rds |binary AMDconfigurations-0.2.1/AMDconfigurations/inst/CITATION |only AMDconfigurations-0.2.1/AMDconfigurations/inst/COPYRIGHTS |only AMDconfigurations-0.2.1/AMDconfigurations/inst/MIGRATION.md |only AMDconfigurations-0.2.1/AMDconfigurations/inst/doc/AMDconfigurations.R | 82 AMDconfigurations-0.2.1/AMDconfigurations/inst/doc/AMDconfigurations.Rmd | 293 +- AMDconfigurations-0.2.1/AMDconfigurations/inst/doc/AMDconfigurations.html | 1050 +++++----- AMDconfigurations-0.2.1/AMDconfigurations/inst/examples/example_ecology.R | 208 - AMDconfigurations-0.2.1/AMDconfigurations/inst/examples/example_transcriptomics.R | 338 --- AMDconfigurations-0.2.1/AMDconfigurations/man/AMDconfigurations-package.Rd |only AMDconfigurations-0.2.1/AMDconfigurations/man/Fulldata.Rd | 51 AMDconfigurations-0.2.1/AMDconfigurations/man/Transcdata_small.Rd | 52 AMDconfigurations-0.2.1/AMDconfigurations/man/amd_reproducibility_manifest.Rd |only AMDconfigurations-0.2.1/AMDconfigurations/man/amd_score.Rd |only AMDconfigurations-0.2.1/AMDconfigurations/man/assign_configurations.Rd | 171 + AMDconfigurations-0.2.1/AMDconfigurations/man/compute_amd_curve.Rd | 197 + AMDconfigurations-0.2.1/AMDconfigurations/man/diagnose_amd.Rd |only AMDconfigurations-0.2.1/AMDconfigurations/man/load_amd_predictor.Rd |only AMDconfigurations-0.2.1/AMDconfigurations/man/plot.amd_curve.Rd | 49 AMDconfigurations-0.2.1/AMDconfigurations/man/plot.amd_prediction.Rd |only AMDconfigurations-0.2.1/AMDconfigurations/man/plot_AMD.Rd | 79 AMDconfigurations-0.2.1/AMDconfigurations/man/predict_amd.Rd |only AMDconfigurations-0.2.1/AMDconfigurations/man/print.amd_curve.Rd | 40 AMDconfigurations-0.2.1/AMDconfigurations/man/print.amd_diagnostics.Rd |only AMDconfigurations-0.2.1/AMDconfigurations/man/print.amd_prediction.Rd |only AMDconfigurations-0.2.1/AMDconfigurations/man/summary.amd_curve.Rd | 40 AMDconfigurations-0.2.1/AMDconfigurations/man/summary.amd_prediction.Rd |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat.R | 8 AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/fixtures |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/helper-curve-profile.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/helper-legacy-curve.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/helper-mixed-convergence.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_amd_predictor.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_amd_reproducibility_manifest.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_amd_score.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_assign_configurations.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_compute_amd_curve.R | 502 ++++ AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_corrected_reader.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_data_contracts.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_diagnose_amd.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_e1071_contract.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_plot_methods.R | 64 AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_predict_amd_integration.R |only AMDconfigurations-0.2.1/AMDconfigurations/tests/testthat/test_print_summary_methods.R | 60 AMDconfigurations-0.2.1/AMDconfigurations/vignettes/AMDconfigurations.Rmd | 293 +- 83 files changed, 3238 insertions(+), 1974 deletions(-)
More information about AMDconfigurations at CRAN
Permanent link
Title: Multivariate Multiscale Spatial Analysis
Description: Tools for the multiscale spatial analysis of multivariate data.
Several methods are based on the use of a spatial weighting matrix and its
eigenvector decomposition (Moran's Eigenvectors Maps, MEM).
Several approaches are described in the review Dray et al (2012)
<doi:10.1890/11-1183.1>.
Author: Stephane Dray [aut] ,
David Bauman [ctb],
Guillaume Blanchet [ctb],
Daniel Borcard [ctb],
Sylvie Clappe [ctb],
Guillaume Guenard [ctb] ,
Thibaut Jombart [ctb],
Guillaume Larocque [ctb],
Pierre Legendre [ctb] ,
Naima Madi [ctb],
Helene H Wagner [ctb], [...truncated...]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between adespatial versions 0.3-29 dated 2026-03-20 and 0.3-30 dated 2026-10-12
DESCRIPTION | 11 MD5 | 30 +- NAMESPACE | 211 +++++++++-------- R/aem.weight.time.R | 2 R/envspace.test.R | 580 ++++++++++++++++++++++++++++++------------------ R/globloc.rtests.R | 4 R/plot.constr.hclust.R | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/tutorial.Rmd | 2 inst/doc/tutorial.html | 440 +++++++++++++++++------------------- man/aem.weight.edges.Rd | 5 man/envspace.test.Rd | 201 ++++++++++------ man/global.rtest.Rd | 2 tests |only vignettes/tutorial.Rmd | 2 16 files changed, 860 insertions(+), 631 deletions(-)
Title: Skewed Generalized T Distribution Tree
Description: Density, distribution function, quantile function and random generation for the skewed generalized t distribution. This package also provides a function that can fit data to the skewed generalized t distribution using maximum likelihood estimation.
Author: Carter Davis [aut, cre]
Maintainer: Carter Davis <cdavis40@chicagobooth.edu>
Diff between sgt versions 2.0 dated 2015-09-03 and 2.0-2 dated 2026-10-12
DESCRIPTION | 18 +++++++++++------- MD5 | 12 ++++++------ build/vignette.rds |binary inst/doc/sgt.pdf |binary man/sgt.Rd | 2 +- man/sgtmle.Rd | 4 ++-- man/summarysgtest.Rd | 2 +- 7 files changed, 21 insertions(+), 17 deletions(-)
Title: A Toolkit for Using Whole Building Simulation Program
'EnergyPlus'
Description: A rich toolkit of using the whole building
simulation program 'EnergyPlus'(<https://energyplus.net>), which
enables programmatic navigation, modification of 'EnergyPlus' models
and makes it less painful to do parametric simulations and analysis.
Author: Hongyuan Jia [aut, cre, cph] ,
Adrian Chong [aut]
Maintainer: Hongyuan Jia <hongyuanjia@cqust.edu.cn>
Diff between eplusr versions 0.17.0 dated 2026-06-20 and 0.18.0 dated 2026-10-12
DESCRIPTION | 17 MD5 | 212 - NAMESPACE | 9 NEWS.md | 73 R/assert.R | 374 +- R/constants.R | 35 R/diagram.R | 122 R/epw.R | 140 R/err.R | 6 R/format.R | 2459 ++++++++-------- R/group.R | 85 R/idd.R | 12 R/iddobj.R | 3966 ++++++++++++------------- R/idf.R | 200 + R/idfobj-sch.R | 1160 +++---- R/idfobj.R | 150 R/impl-epw.R | 53 R/impl-geom.R | 3674 ++++++++++++----------- R/impl-idd.R | 4 R/impl-iddobj.R | 228 - R/impl-idf.R | 487 ++- R/impl-idfobj-sch.R | 2010 ++++++------- R/impl-idfobj.R | 38 R/impl-sql.R | 1572 +++++----- R/impl-viewer.R | 135 R/impl.R | 39 R/install.R | 34 R/param.R | 11 R/rdd.R | 814 ++--- R/reload.R | 1 R/sql.R | 1309 ++++---- R/sysdata.rda |binary R/transition.R | 44 R/utils.R | 69 R/validate.R | 49 R/viewer.R | 1809 +++++------ README.md | 12 inst/CITATION | 32 inst/extdata/epw.idd | 1816 +++++------ man/EplusSql.Rd | 1600 +++++----- man/Idd.Rd | 12 man/IddObject.Rd | 5217 +++++++++++++++++----------------- man/Idf.Rd | 173 + man/IdfObject.Rd | 155 - man/IdfSchedule.Rd | 1162 +++---- man/IdfViewer.Rd | 1797 +++++------ man/as.character.IddObject.Rd | 13 man/as.character.Idf.Rd | 4 man/as.character.IdfObject.Rd | 93 man/as_EpwDate.Rd | 64 man/assertion.Rd | 182 - man/clean_wd.Rd | 86 man/custom_validate.Rd | 3 man/eplusr-package.Rd | 116 man/expand_idf_regex.Rd | 82 man/format.Idf.Rd | 4 man/format.IdfObject.Rd | 93 man/get_idd_relation.Rd | 126 man/get_idf_table.Rd | 3 man/idd_object.Rd | 60 man/init_idf_value.Rd | 126 man/install_duckdb_sqlite.Rd |only man/path_eplus.Rd | 136 man/rdd.Rd | 144 man/read_epw.Rd | 100 man/transition.Rd | 128 man/version_updater.Rd | 118 man/with_option.Rd | 96 tests/testthat.R | 10 tests/testthat/helper-cnd.R | 12 tests/testthat/helper-copy.R | 72 tests/testthat/helper-eplus.R | 14 tests/testthat/helper-latest-output.R |only tests/testthat/helper-text.R | 222 - tests/testthat/helper-transition.R | 28 tests/testthat/test-assert.R | 146 tests/testthat/test-diagram.R | 32 tests/testthat/test-epw.R | 40 tests/testthat/test-format.R | 1049 +++--- tests/testthat/test-group.R | 125 tests/testthat/test-idd.R | 120 tests/testthat/test-iddobj.R | 9 tests/testthat/test-idf.R | 240 + tests/testthat/test-idfobj-sch.R | 684 ++-- tests/testthat/test-idfobj.R | 78 tests/testthat/test-impl-epw.R | 1017 +++--- tests/testthat/test-impl-geom.R | 637 ++-- tests/testthat/test-impl-idd.R | 5 tests/testthat/test-impl-iddobj.R | 262 - tests/testthat/test-impl-idf.R | 137 tests/testthat/test-impl-idfobj-sch.R | 636 ++-- tests/testthat/test-impl-idfobj.R | 40 tests/testthat/test-impl-viewer.R | 200 + tests/testthat/test-impl.R | 46 tests/testthat/test-install.R | 86 tests/testthat/test-job-json.R | 20 tests/testthat/test-job.R | 255 - tests/testthat/test-options.R | 64 tests/testthat/test-param.R | 17 tests/testthat/test-parse.R | 1174 +++---- tests/testthat/test-rdd.R | 126 tests/testthat/test-reload.R | 9 tests/testthat/test-run.R | 1687 +++++----- tests/testthat/test-sql.R | 179 - tests/testthat/test-transition.R | 239 + tests/testthat/test-utils.R | 261 - tests/testthat/test-validate.R | 30 tests/testthat/test-viewer.R | 15 108 files changed, 24114 insertions(+), 21062 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-23 0.4.0
2015-07-16 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-03 3.2
2018-07-04 3.1
2018-05-15 3.0
2017-11-23 2.0
2016-08-05 1.0
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2018-01-03 0.3
2015-12-04 0.2
2015-10-13 0.1
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
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Title: 'MUI X Tree View' for 'shiny' Apps and 'Quarto'
Description: Wraps the 'MUI X Tree View' React components <https://mui.com/x/react-tree-view/>
for use in 'shiny' applications and 'quarto' documents, letting users navigate
hierarchical data with nested levels that can be expanded and collapsed. Bundles
the MIT-licensed community edition of the '@mui/x-tree-view' JavaScript library
(the commercial 'Pro' tier is not included).
Author: Felix Luginbuhl [aut, cre, cph] ,
MUI [cph] JavaScript libraries; see LICENSE.note),
Meta Platforms, Inc. and affiliates [cph] ,
React Community [cph] ,
Luke Edwards [cph] ,
Reselect contributors [cph]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between muiTreeView versions 0.1.1 dated 2026-01-26 and 0.2.0 dated 2026-10-12
DESCRIPTION | 59 ++++++-- LICENSE.note |only MD5 | 83 +++++++++-- NAMESPACE | 13 + NEWS.md | 11 + R/browser.R |only R/components.R | 103 ++++++++++---- R/documentation.R | 168 ++++++++++++++++++++++++ R/muiTreeDependency.R | 40 +++-- R/zzz.R |only README.md | 134 +++++++++---------- inst/components.txt |only inst/examples |only inst/www/muiTreeView/x-tree-view.js | 64 ++++----- inst/www/muiTreeView/x-tree-view.js.LICENSE.txt | 26 --- man/RichTreeViewRoot.Rd |only man/SimpleTreeViewRoot.Rd |only man/TreeItemCheckbox.Rd |only man/TreeItemContent.Rd |only man/TreeItemGroupTransition.Rd |only man/TreeItemIconContainer.Rd |only man/TreeItemLabel.Rd |only man/TreeItemLabelInput.Rd |only man/TreeItemProvider.Rd |only man/TreeItemRoot.Rd |only man/TreeViewCollapseIcon.Rd |only man/TreeViewExpandIcon.Rd |only man/muiTreeViewDependency.Rd | 12 + man/print.muiTreeView.Rd |only tests/testthat/test-RichTreeView.R | 26 +-- tests/testthat/test-RichTreeViewRoot.R |only tests/testthat/test-SimpleTreeView.R | 26 +-- tests/testthat/test-SimpleTreeViewRoot.R |only tests/testthat/test-TreeItem.R | 26 +-- tests/testthat/test-TreeItemCheckbox.R |only tests/testthat/test-TreeItemContent.R |only tests/testthat/test-TreeItemGroupTransition.R |only tests/testthat/test-TreeItemIcon.R | 26 +-- tests/testthat/test-TreeItemIconContainer.R |only tests/testthat/test-TreeItemLabel.R |only tests/testthat/test-TreeItemLabelInput.R |only tests/testthat/test-TreeItemProvider.R |only tests/testthat/test-TreeItemRoot.R |only tests/testthat/test-TreeViewCollapseIcon.R |only tests/testthat/test-TreeViewExpandIcon.R |only tests/testthat/test-js-exports.R |only tests/testthat/test-muiTreeViewDependency.R |only 47 files changed, 571 insertions(+), 246 deletions(-)
Title: Utility Functions for Production R Code
Description: A suite of utility functions providing functionality commonly
needed for production level projects such as logging, error handling,
cache management and date-time parsing. Functions for date-time parsing and
formatting require that time zones be specified explicitly, avoiding a common
source of error when working with environmental time series.
Author: Jonathan Callahan [aut, cre],
Eli Grosman [ctb],
Spencer Pease [ctb],
Thomas Bergamaschi [ctb]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaCoreUtils versions 0.6.3 dated 2026-09-30 and 0.6.4 dated 2026-10-12
DESCRIPTION | 9 +++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 12 ++++++++++++ R/html_getTables.R | 3 +-- R/timeStamp.R | 27 ++++++++++++++++++++++++--- README.md | 14 +++++++------- inst/doc/date-parsing.Rmd | 4 ++-- inst/doc/date-parsing.html | 4 ++-- inst/doc/logging.html | 32 ++++++++++++++++---------------- man/timeStamp.Rd | 13 +++++++++++-- tests/testthat/test-html_getTables.R | 24 ++++++++++++++++++++++++ tests/testthat/test-setIfNull.R | 2 ++ tests/testthat/test-timeStamp.R | 35 +++++++++++++++++++++++++++++++++++ vignettes/date-parsing.Rmd | 4 ++-- 14 files changed, 156 insertions(+), 53 deletions(-)
More information about MazamaCoreUtils at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-17 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-27 1.3.2
2015-07-20 1.0.2
2015-07-08 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-15 1.5
2016-03-03 1.4
2015-07-03 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-22 0.2.1
2018-01-18 0.1.2
2017-11-08 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-14 1.0.1
2017-10-04 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-26 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-09 1.1.6
2020-06-19 1.1.3
2018-11-29 1.0.2
2018-05-08 0.2.2
2017-11-28 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-16 2.0-1
2015-11-07 1.0-1
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2020-11-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-21 0.1.1
2018-12-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-01 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-29 1.1
2017-05-22 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-31 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-02 0.8.5
2019-12-10 0.8.4
2018-09-11 0.8.3
2018-06-12 0.8.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-26 2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-06 1.0-0
2018-07-07 0.6
2018-05-29 0.5
2015-07-15 0.3
2015-07-07 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-28 1.2.3
2015-04-06 1.1-3
2014-10-02 1.1
2014-01-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-13 1.2
2018-04-30 1.1
2017-05-29 1.0
2015-11-16 0.1
Title: Interface to the ITALIC Database of Lichen Biodiversity
Description: A programmatic interface to the Web Service methods provided by ITALIC (<https://italic.units.it>).
ITALIC is a database of lichen data in Italy and bordering European countries. 'ritalic' includes functions for retrieving information
about lichen scientific names, geographic distribution, ecological data, morpho-functional traits and identification keys.
More information about the data is available at <https://italic.units.it/?procedure=base&t=59&c=60>.
The API documentation is available at <https://italic.units.it/?procedure=api>.
Author: Matteo Conti [aut, cre] ,
Luana Francesconi [aut],
Alice Musina [aut],
Luca Di Nuzzo [aut],
Gabriele Gheza [aut],
Chiara Pistocchi [aut],
Juri Nascimbene [aut],
Pier Luigi Nimis [aut],
Stefano Martellos [aut]
Maintainer: Matteo Conti <matt.ciao@gmail.com>
Diff between ritalic versions 0.12.0 dated 2026-03-16 and 0.13.0 dated 2026-10-12
DESCRIPTION | 11 +++-- MD5 | 23 ++++++++--- NAMESPACE | 34 ++++++++++------- R/api_utils.R | 76 +++++++++++++++++++++------------------ R/italic_search.R |only R/italic_taxon_data.R | 24 ++++++++---- R/mcp.R |only README.md | 74 +++++++++++++++++++++++++++++++++++++ build/partial.rdb |binary man/italic_mcp_server.Rd |only man/italic_mcp_tools.Rd |only man/italic_search.Rd |only man/italic_search_filters.Rd |only man/italic_taxon_data.Rd | 11 +++++ tests/testthat/test_api_utils.R |only tests/testthat/test_mcp.R |only tests/testthat/test_taxon_data.R |only 17 files changed, 185 insertions(+), 68 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, biplot, scatter plot, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.3.0 dated 2026-06-22 and 2.3.1 dated 2026-10-12
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/Cluster.R | 37 ++++++++++++++++++++++++++++++++----- R/DA.R | 2 +- R/IM.R | 12 ++++++++---- man/MVar.pt-package.Rd | 4 ++-- 6 files changed, 52 insertions(+), 21 deletions(-)
Title: Multivariate Analysis
Description: Multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, biplot, scatter plot, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.3.0 dated 2026-06-21 and 2.3.1 dated 2026-10-12
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/Cluster_English.R | 35 +++++++++++++++++++++++++++++++---- R/DA_English.R | 2 +- R/IM_English.R | 15 +++++++++------ man/MVar-package.Rd | 4 ++-- 6 files changed, 52 insertions(+), 22 deletions(-)
Title: Mobility Network Analysis
Description: Implements the method to analyse weighted mobility networks or distribution networks as outlined in:
Block, P., Stadtfeld, C., & Robins, G. (2022) <doi:10.1016/j.socnet.2021.08.003>.
The purpose of the model is to analyse the structure of mobility,
incorporating exogenous predictors pertaining to individuals and locations
known from classical mobility analyses, as well as modelling emergent mobility
patterns akin to structural patterns known from the statistical analysis of social networks.
Version 2 runs the simulations in 'C++' (using 'Rcpp') and, besides stochastic
approximation (Robbins-Monro), can estimate parameters with Geyer-Thompson MCMC
maximum likelihood estimation.
Author: Per Block [cre, aut, cph] ,
Christoph Stadtfeld [aut] ,
Nico Keiser [aut] ,
Marion Hoffman [aut] ,
Jingying Wang [aut]
Maintainer: Per Block <block@soziologie.uzh.ch>
Diff between MoNAn versions 2.0.0 dated 2026-10-11 and 2.1.1 dated 2026-10-12
DESCRIPTION | 10 MD5 | 72 ++-- NAMESPACE | 13 NEWS.md | 75 ++++ R/1_hiddenFunctions.R | 359 +++++++++++----------- R/1b_cppSampler.R | 19 + R/2c_effectFunctions_concentration.R | 376 +++++++++++++----------- R/3_coreFunctions.R | 38 +- R/4_auxiliaryFunctions.R | 222 ++++++++++---- R/5_gofParamFunctions.R | 37 +- R/RcppExports.R | 4 README.md | 78 +++- data/myResDN.rda |binary man/concentration_basic_squared.Rd |only man/concentration_norm.Rd |only man/concentration_norm_squared.Rd |only man/concentration_prop_orig_cov.Rd |only man/concentration_rankGW.Rd |only man/estimateMobilityNetwork.Rd | 13 man/extractTraces.Rd | 5 man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-17-2.png |binary man/figures/README-unnamed-chunk-17-3.png |binary man/figures/README-unnamed-chunk-17-4.png |binary man/figures/README-unnamed-chunk-19-1.png |binary man/figures/README-unnamed-chunk-19-2.png |binary man/getIndegree.Rd | 8 man/getTieWeights.Rd | 7 man/gofMobilityNetwork.Rd | 22 + man/scoreTest.Rd | 59 ++- src/RcppExports.cpp | 20 + src/effects.cpp | 164 ++++++++++ src/sampler.cpp | 92 +++++ tests/testthat/helper-cpp.R | 18 - tests/testthat/test-cpp-effects-concentration.R | 19 + tests/testthat/test-effects-change-target.R | 6 tests/testthat/test-geyer-thompson.R | 56 +++ tests/testthat/test-gof.R |only tests/testthat/test-parallel.R |only tests/testthat/test-sampler-cpp.R | 4 tests/testthat/test-score-test.R |only 41 files changed, 1270 insertions(+), 526 deletions(-)
Title: Machine Learning
Description: Machine learning, containing several algorithms for supervised and unsupervised classification, in addition to a function that plots the Receiver Operating Characteristic (ROC) and Precision-Recall (PRC) curve graphs, and also a function that returns several metrics used for model evaluation, the latter can be used in ranking results from other packs.
Author: Paulo Cesar Ossani [aut, cre]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Kira versions 1.0.8 dated 2026-04-13 and 1.0.9 dated 2026-10-12
DESCRIPTION | 8 ++++---- MD5 | 32 +++++++++++++++++--------------- NAMESPACE | 7 ++++--- R/IM.R |only R/brute.force.R | 8 ++++---- R/elbow.R | 9 +++++++-- R/hierarchical.R | 17 +++++++++++------ R/kmeans.R | 7 ++++++- R/knn.R | 6 ++++++ R/lda.R | 4 ++-- R/qda.R | 2 +- R/regression.R | 13 ++++++++++--- R/silhouette.R | 9 +++++++-- R/transf.data.R |only man/Kira-package.Rd | 4 ++-- man/elbow.Rd | 6 +++--- man/hierarchical.Rd | 4 ++-- man/silhouette.Rd | 8 ++++---- 18 files changed, 90 insertions(+), 54 deletions(-)
Title: Quantifying and Monetizing Health Impacts Attributable to
Exposure
Description: This R package has been developed with a focus on air pollution and noise but can be applied to other exposures. The initial development has been funded by the European Union project BEST-COST. Disclaimer: It is work in progress and the developers are not liable for any calculation errors or inaccuracies resulting from the use of this package.
Selection of relevant references (in chronological order):
WHO (2003) <https://www.who.int/publications/i/item/9241546204>,
Murray et al. (2003) <doi:10.1186/1478-7954-1-1>,
Miller & Hurley (2003) <doi:10.1136/jech.57.3.200>,
Steenland & Armstrong (2006) <doi:10.1097/01.ede.0000229155.05644.43>,
WHO (2011) <https://iris.who.int/items/723ab97c-5c33-4e3b-8df1-744aa5bc1c27>,
GBD 2019 Risk Factors Collaborators (2020) <doi:10.1016/S0140-6736(20)30752-2>.
Author: Alberto Castro [cre, aut] ,
Axel Luyten [aut] ,
Arno Pauwels [ctb] ,
Liliana Vazquez Fernandez [ctb] ,
Gianni Ardielli [ctb] ,
Iracy Pimenta [ctb] ,
Susanne Breitner [ctb] ,
Carl Baravelli [ctb] ,
Vanessa Gorasso [ctb] ,
Maria Lepnurm [ctb] ,
Andreia [...truncated...]
Maintainer: Alberto Castro <alberto.castrofernandez@swisstph.ch>
Diff between healthiar versions 0.2.6 dated 2026-09-11 and 0.2.7 dated 2026-10-12
DESCRIPTION | 8 MD5 | 68 NEWS.md | 41 R/attribute_lifetable.R | 9 R/attribute_master.R | 2 R/compare.R | 66 R/compile_input.R | 5 R/get_impact_with_lifetable.R | 59 R/get_output.R | 34 R/get_risk_and_pop_fraction.R | 31 R/prepare_lifetable.R | 731 + R/socialize.R | 6 R/summarize_uncertainty.R | 154 R/validate_input_attribute.R | 82 R/zzz_global_variables.R | 114 README.md | 9 build/partial.rdb |binary build/vignette.rds |binary inst/doc/intro_to_healthiar.R | 20 inst/doc/intro_to_healthiar.Rmd | 5697 +++++++-------- inst/doc/intro_to_healthiar.html | 179 man/attribute_health.Rd | 2 man/attribute_lifetable.Rd | 11 man/attribute_master.Rd | 2 man/attribute_mod.Rd | 2 man/healthiar-package.Rd | 1 man/prepare_lifetable.Rd | 8 tests/testthat/test-attribute_health.R |10348 ++++++++++++++-------------- tests/testthat/test-attribute_lifetable.R | 2521 +++--- tests/testthat/test-compare.R | 24 tests/testthat/test-multiexpose.R | 70 tests/testthat/test-prepare_lifetable.R | 24 tests/testthat/test-socialize.R | 45 tests/testthat/test-summarize_uncertainty.R | 2157 ++--- vignettes/intro_to_healthiar.Rmd | 5697 +++++++-------- 35 files changed, 14491 insertions(+), 13736 deletions(-)
Title: Conditional Inference Trees with Stacked Multiple Imputation
Description: Implements the stacked-imputation workflow for conditional
inference trees ('ctree') described in Sherlock et al. (2026)
<doi:10.1080/00273171.2026.2661244>. When data contain missing values,
multiply imputed datasets (e.g., from 'mice') are stacked vertically
and a single 'ctree' is fit on the combined data. To correct for the
artificially inflated sample size introduced by stacking, every
node-level test statistic is divided by the number of imputations M,
the node-level p-values are recomputed from the chi-squared reference
distribution 'ctree' uses (including its multiplicity adjustment across
candidate splitting variables), and the tree is compressed bottom-up
(the Stack/M correction). Degrees of freedom are derived for each node
and each candidate variable, so univariate, bivariate and
higher-dimensional outcomes are all handled, as are unordered factor
predictors, whose degrees of freedom depend on how many levels remain
in a node. The result is a single interpretable tree [...truncated...]
Author: Phillip Sherlock [aut, cre]
Maintainer: Phillip Sherlock <phillip.sherlock@ufl.edu>
Diff between ctreeMI versions 1.1.0 dated 2026-09-18 and 1.2.0 dated 2026-10-12
DESCRIPTION | 8 MD5 | 18 - NEWS.md | 33 ++ R/confirm.R | 523 +++++++++++++++++++++++++++++++----------- R/ctree_stacked.R | 2 man/confirm_ctreeMI.Rd | 57 ++++ man/ctree_stacked.Rd | 2 man/discover_confirm.Rd | 14 + man/split_holdout.Rd | 28 +- tests/testthat/test-confirm.R | 162 +++++++++++++ 10 files changed, 695 insertions(+), 152 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-04 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-16 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-02 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-12 1.3
2015-08-28 1.2
2015-05-29 1.1
2014-11-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-14 2.0.2
2020-01-31 2.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-05 1.1.2
2018-11-04 1.1.1
2018-08-13 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-05 3.2
2016-11-08 3.1
2015-07-26 3.0
2015-06-25 2.0
2014-10-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-24 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-29 0.3.0
2015-05-26 0.2.2
2015-05-22 0.2.1
2014-03-23 0.2.0
2013-05-27 0.1.2
2013-02-01 0.1.1
2012-12-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-18 0.3.4
2020-07-06 0.3.3
2020-06-08 0.3.2
2020-05-25 0.3.1
2020-05-06 0.3.0
2020-03-30 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-16 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-12 1.4
2015-05-28 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-13 0.1.1
2019-04-01 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-05 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-27 0.0.5
2017-12-06 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-07 1.1.0
2019-11-05 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-14 0.1.0
Title: Ballot-Level Microdata and Summaries for Ecological Inference
(Florida 2000)
Description: Provides access to ballot-level electoral microdata from the Florida 2000
general election and tools for computing summaries suitable for ecological inference.
Includes functions to load data by county or race (election), compute marginal distributions
at the precinct level, and build joint contingency arrays across multiple races for
use with ecological inference packages. Data files are stored in a remote repository
and downloaded on demand; local copies are supported via the 'data_dir' option.
Acknowledgements:
We thank Jaime Ventura (ANES, University of Michigan) and Dan Keating (The Washington Post) for providing the raw data that serve as the starting point for the construction of this package. We also acknowledge funding from the Conselleria de Educación, Cultura y Universidades (grant CIACIO/2023/031).
Author: Cristina Aybar [aut] ,
Jose M. Pavia [aut, cre]
Maintainer: Jose M. Pavia <jose.m.pavia@uv.es>
Diff between eiballots versions 0.1.0-1 dated 2026-09-26 and 0.2.0-1 dated 2026-10-12
DESCRIPTION | 6 MD5 | 77 ++--- NEWS.md |only R/county.R | 3 R/county_docs.R | 646 ++++++++++++++++++++++------------------------ R/data-objects.R | 25 - R/data_access.R | 22 + R/ei_summary.R | 5 R/ei_summary_random.R | 15 - R/utils.R | 87 +++--- README.md | 417 +++++++++++++++++++++++------ data/Broward.rda |binary data/Highlands.rda |binary data/Hillsborough.rda |binary data/Lee.rda |binary data/Marion.rda |binary data/Miami_Dade.rda |binary data/Palm_Beach.rda |binary data/Pasco.rda |binary data/Pinellas.rda |binary data/Sarasota.rda |binary data/county_catalog.rda |binary data/election_catalog.rda |binary man/Broward.Rd | 55 +-- man/Highlands.Rd | 35 +- man/Hillsborough.Rd | 135 ++++----- man/Lee.Rd | 35 +- man/Marion.Rd | 81 ++--- man/Miami_Dade.Rd | 79 ++--- man/Palm_Beach.Rd | 121 ++++---- man/Pasco.Rd | 25 - man/Pinellas.Rd | 39 +- man/Sarasota.Rd | 31 +- man/ei_summary.Rd | 4 man/ei_summary_random.Rd | 14 man/election_catalog.Rd | 20 - man/example_ballots.Rd | 4 man/get_county_data.Rd | 12 man/get_election_data.Rd | 2 man/list_elections.Rd | 4 40 files changed, 1154 insertions(+), 845 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-13 0.2.3
2015-01-27 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-04 2.0.0
2013-01-05 1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-20 0.2.1
2019-07-04 0.2.0
2018-04-30 0.1.6
2018-04-12 0.1.5
2017-10-28 0.1.4
2017-10-17 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-29 1.2
2014-02-05 1.1
2013-07-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-24 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-01 0.2.0
2020-07-27 0.1.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-17 1.0.1
2020-09-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-04 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-21 0.95.4
2014-08-31 0.90
2012-09-05 0.67
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-21 1.2
2015-10-19 1.1
2015-01-20 1.0-5
2013-04-14 1.0-4
2011-09-28 1.0-3
2010-01-22 1.0-2
2009-03-16 1.0-1
2009-01-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-13 1.1.0
2020-03-25 1.0.4
2019-05-31 1.0.3
2018-11-22 1.0.2
2018-06-01 1.0.1
2018-01-26 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-02 0.99.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-16 1.1
2015-06-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-04 0.1.2
2020-05-01 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-19 1.1
2019-07-15 1.0
Title: Taxonomic Hierarchy Distances and Lineage Analysis
Description: Computes distances between taxonomic hierarchy nodes using lineage
data retrieved from The Taxonomicon <http://taxonomicon.taxonomy.nl>. For
distinct nodes, distance is defined as the reciprocal of the depth of their
most recent common ancestor; identical nodes have distance zero. This
definition yields an ultrametric within each connected hierarchy. Functions
are provided for auditable name resolution, online or user-supplied lineage
analysis, clade membership, pairwise, matrix, and cross-set distance
calculation, classification trees with named clades, hierarchical
clustering, principal coordinates analysis, portable and comparable JSON
analysis bundles, and cache management. Distance matrices are returned as
base R 'dist' objects. The distances represent classification depth rather
than evolutionary time or phylogenetic branch length.
Author: Rodrigo Fonseca Villa [aut, cre]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>
Diff between taxodist versions 0.8.0 dated 2026-09-24 and 0.9.0 dated 2026-10-12
DESCRIPTION | 18 MD5 | 86 - NAMESPACE | 9 NEWS.md | 102 + R/bundle.R | 187 ++ R/distance.R | 1274 ++++++++++--------- R/fetch.R | 2040 ++++++++++++++++--------------- R/taxodist-package.R | 11 R/tree.R |only R/utils.R | 23 inst/CITATION | 2 inst/WORDLIST | 58 inst/doc/introduction.R | 52 inst/doc/introduction.Rmd | 117 + inst/doc/introduction.html | 361 +++-- inst/doc/statistical-applications.R | 4 inst/doc/statistical-applications.Rmd | 10 inst/doc/statistical-applications.html | 375 ++--- man/cache_info.Rd | 5 man/check_coverage.Rd | 6 man/compare_bundles.Rd |only man/cross_distances.Rd |only man/distance_matrix.Rd | 11 man/focal_distances.Rd | 3 man/get_lineage.Rd | 5 man/get_lineage_by_id.Rd | 11 man/get_taxonomicon_id.Rd | 19 man/load_cache.Rd | 6 man/print.taxodist_bundle_comparison.Rd |only man/save_cache.Rd | 8 man/taxo_bundle.Rd | 11 man/taxo_cluster.Rd | 3 man/taxo_heatmap.Rd | 14 man/taxo_ordinate.Rd | 2 man/taxo_resolve.Rd | 17 man/taxo_search.Rd | 2 man/taxo_tree.Rd |only man/taxodist-package.Rd | 12 tests/testthat/test-analysis.R |only tests/testthat/test-bundle-compare.R |only tests/testthat/test-bundle.R |only tests/testthat/test-cache.R |only tests/testthat/test-data.R |only tests/testthat/test-distance.R | 2098 -------------------------------- tests/testthat/test-fetch.R |only tests/testthat/test-matrix.R |only tests/testthat/test-network.R |only tests/testthat/test-path.R |only tests/testthat/test-resolution.R |only tests/testthat/test-tree.R |only vignettes/introduction.Rmd | 117 + vignettes/statistical-applications.Rmd | 10 52 files changed, 3028 insertions(+), 4061 deletions(-)
Title: Interface to 'TA-Lib' for Technical Analysis and Candlestick
Patterns
Description: Interface to the 'TA-Lib' (Technical Analysis Library) 'C'
library, providing access to 150+ indicators (e.g. Average Directional
Movement Index (ADX), Moving Average Convergence Divergence (MACD),
Relative Strength Index (RSI), Stochastic Oscillator, Bollinger Bands),
candlestick pattern recognition, and rolling-window utilities. Core
computations are implemented in 'C' for fast Open-High-Low-Close-Volume
(OHLCV) time-series feature engineering and rule-based signal
generation, with optional interactive visualization via 'plotly'.
Author: Serkan Korkmaz [cre, aut, cph] ,
Mario Fortier [cph] )
Maintainer: Serkan Korkmaz <serkor1@duck.com>
Diff between talib versions 0.9-4 dated 2026-10-05 and 0.9-5 dated 2026-10-12
DESCRIPTION | 6 +-- MD5 | 14 +++---- NEWS.md | 4 ++ README.md | 2 - inst/doc/candlestick.html | 8 ++-- inst/doc/charting.html | 92 +++++++++++++++++++++++----------------------- inst/doc/talib.html | 4 +- src/shift.c | 34 ++++++++++------- 8 files changed, 87 insertions(+), 77 deletions(-)
Title: Sequential Trial Emulation
Description: Implementation of sequential trial emulation for the analysis of observational databases.
The 'SEQTaRget' software accommodates time-varying treatments and confounders, as well as binary
and failure time outcomes. 'SEQTaRget' allows to compare both static and dynamic strategies,
can be used to estimate observational analogs of intention-to-treat
and per-protocol effects, and can adjust for potential selection bias
induced by losses-to-follow-up. (Paper to come).
Author: Ryan O'Dea [aut, cre] ,
Tom Palmer [aut] ,
Paul Madley-Dowd [aut] ,
Alejandro Szmulewicz [aut] ,
Miguel A. Hernan [aut] ,
The President and Fellows of Harvard College [cph]
Maintainer: Ryan O'Dea <ryan.odea@psi.ch>
Diff between SEQTaRget versions 1.4.4 dated 2026-08-28 and 1.4.5 dated 2026-10-12
SEQTaRget-1.4.4/SEQTaRget/man/bake_followup_spline.Rd |only SEQTaRget-1.4.5/SEQTaRget/DESCRIPTION | 13 SEQTaRget-1.4.5/SEQTaRget/MD5 | 93 ++--- SEQTaRget-1.4.5/SEQTaRget/NAMESPACE | 3 SEQTaRget-1.4.5/SEQTaRget/NEWS.md | 25 + SEQTaRget-1.4.5/SEQTaRget/R/SEQestimate.R | 2 SEQTaRget-1.4.5/SEQTaRget/R/SEQexpand.R | 21 - SEQTaRget-1.4.5/SEQTaRget/R/SEQopts.R | 35 + SEQTaRget-1.4.5/SEQTaRget/R/SEQuential.R | 71 ++- SEQTaRget-1.4.5/SEQTaRget/R/class_definitions.R | 4 SEQTaRget-1.4.5/SEQTaRget/R/class_setters.R | 2 SEQTaRget-1.4.5/SEQTaRget/R/internal_analysis.R | 10 SEQTaRget-1.4.5/SEQTaRget/R/internal_covariates.R | 26 + SEQTaRget-1.4.5/SEQTaRget/R/internal_endoffup.R | 63 +-- SEQTaRget-1.4.5/SEQTaRget/R/internal_glmHelpers.R | 32 + SEQTaRget-1.4.5/SEQTaRget/R/internal_hazard.R | 23 - SEQTaRget-1.4.5/SEQTaRget/R/internal_misc.R | 138 ++++--- SEQTaRget-1.4.5/SEQTaRget/R/internal_models.R | 2 SEQTaRget-1.4.5/SEQTaRget/R/internal_multinomial.R | 7 SEQTaRget-1.4.5/SEQTaRget/R/internal_survival.R | 21 - SEQTaRget-1.4.5/SEQTaRget/R/internal_weights.R | 34 + SEQTaRget-1.4.5/SEQTaRget/inst/doc/SEQuential.html | 42 +- SEQTaRget-1.4.5/SEQTaRget/inst/doc/censoring.R | 47 ++ SEQTaRget-1.4.5/SEQTaRget/inst/doc/censoring.Rmd | 68 +++ SEQTaRget-1.4.5/SEQTaRget/inst/doc/censoring.html | 200 +++++++---- SEQTaRget-1.4.5/SEQTaRget/inst/doc/endoffollowup.Rmd | 2 SEQTaRget-1.4.5/SEQTaRget/inst/doc/endoffollowup.html | 4 SEQTaRget-1.4.5/SEQTaRget/inst/doc/seqopts.Rmd | 4 SEQTaRget-1.4.5/SEQTaRget/inst/doc/seqopts.html | 18 SEQTaRget-1.4.5/SEQTaRget/man/SEQopts.Rd | 12 SEQTaRget-1.4.5/SEQTaRget/man/SEQuential.Rd | 2 SEQTaRget-1.4.5/SEQTaRget/man/bake_spline_knots.Rd |only SEQTaRget-1.4.5/SEQTaRget/man/bake_spline_knots_one.Rd |only SEQTaRget-1.4.5/SEQTaRget/man/check_design.Rd |only SEQTaRget-1.4.5/SEQTaRget/man/design_matrix.Rd |only SEQTaRget-1.4.5/SEQTaRget/man/endoffup.periods.Rd |only SEQTaRget-1.4.5/SEQTaRget/man/internal.hazard.Rd | 2 SEQTaRget-1.4.5/SEQTaRget/man/internal.survival.Rd | 2 SEQTaRget-1.4.5/SEQTaRget/man/subgroup_rows.Rd |only SEQTaRget-1.4.5/SEQTaRget/tests/testthat/test_coefficients.R | 51 +- SEQTaRget-1.4.5/SEQTaRget/tests/testthat/test_covariates.R | 106 +++++ SEQTaRget-1.4.5/SEQTaRget/tests/testthat/test_deviation.R | 28 + SEQTaRget-1.4.5/SEQTaRget/tests/testthat/test_end_of_fup.R | 12 SEQTaRget-1.4.5/SEQTaRget/tests/testthat/test_errors.R | 32 + SEQTaRget-1.4.5/SEQTaRget/tests/testthat/test_misc.R | 148 ++++++++ SEQTaRget-1.4.5/SEQTaRget/tests/testthat/test_multinomial.R | 65 ++- SEQTaRget-1.4.5/SEQTaRget/tests/testthat/test_parallel.R | 13 SEQTaRget-1.4.5/SEQTaRget/tests/testthat/test_splines.R | 165 ++++++++- SEQTaRget-1.4.5/SEQTaRget/vignettes/censoring.Rmd | 68 +++ SEQTaRget-1.4.5/SEQTaRget/vignettes/endoffollowup.Rmd | 2 SEQTaRget-1.4.5/SEQTaRget/vignettes/seqopts.Rmd | 4 51 files changed, 1346 insertions(+), 376 deletions(-)
Title: Donor-Adjusted Post-Shock Forecasting
Description: Implements donor-adjusted methods for forecasting conditional
means and variances after structural shocks. Historical donor episodes
are weighted using covariates observed before each shock, and their
estimated post-shock effects are combined with forecasts from a
target-series model. The methods build on Lin and Eck (2021)
<doi:10.1016/j.ijforecast.2021.03.010>. The package supports donor
balancing weights, structured donor pools, autoregressive integrated
moving average models, and generalized autoregressive conditional
heteroscedasticity models with external regressors.
Author: Qiyang Wang [aut, cre] ,
Daniel J. Eck [aut]
Maintainer: Qiyang Wang <wangqiyang497@gmail.com>
Diff between postshock versions 0.2.0 dated 2026-07-27 and 0.2.1 dated 2026-10-12
DESCRIPTION | 6 MD5 | 47 +++++-- NEWS.md |only R/SynthPrediction.R | 169 +++++++++++++++++++++++---- R/SynthPredictionMultiPool.R | 13 +- R/SynthVolForecast.R | 10 - R/auto-garchx.R | 68 +++++++--- R/data_aapl_s1_input.R |only R/dbw.R | 40 +++++- R/validate-donor-arimax.R |only data/aapl_s1_input.rda |only inst/doc/postshock-workflow.R | 10 - inst/doc/postshock-workflow.Rmd | 28 ++-- inst/doc/postshock-workflow.html | 45 ++++--- inst/replication |only man/SynthPrediction.Rd | 79 ++++++++++-- man/SynthPredictionMultiPool.Rd | 14 +- man/SynthVolForecast.Rd | 12 + man/aapl_s1_input.Rd |only man/auto_garchx.Rd | 17 ++ man/dbw.Rd | 22 +++ tests/testthat/helper-maintenance.R |only tests/testthat/test-maintenance-apple-data.R |only tests/testthat/test-maintenance-arimax.R |only tests/testthat/test-maintenance-garch.R |only tests/testthat/test-maintenance-multipool.R |only tests/testthat/test-maintenance-seasonal.R |only tests/testthat/test-pca-stage.R |only tests/testthat/test-runtime-fingerprint.R |only vignettes/postshock-workflow.Rmd | 28 ++-- 30 files changed, 466 insertions(+), 142 deletions(-)
Title: Goodness-of-Fit Tests for Skew-Normal and Skew-t Models
Description: Provides precomputed-quantile goodness-of-fit tests for
skew-normal distributions, parametric-bootstrap tests for skew-normal and
skew-t distributions, robust fitting, and graphical diagnostics.
Package methods and documentation are described by Li, Xu, and Khang
(2026) <https://github.com/Divo-Lee/PBGoF>.
Author: Hongxiang Li [aut, cre],
Chenglin Xu [aut],
Tsung Fei Khang [aut]
Maintainer: Hongxiang Li <hxli@ynnu.edu.cn>
Diff between PBGoF versions 0.1.0 dated 2026-10-02 and 0.2.0 dated 2026-10-12
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Title: Multi-Action, Multi-Objective Spatial Planning
Description: Provides a modular framework for exact multi-objective spatial
planning using mixed-integer programming. The package supports the
definition of planning problems through planning units, features,
management actions, action effects, spatial relations, targets,
constraints, and objective functions. It enables the optimisation of
spatial planning portfolios under considerations such as boundary
structure, connectivity, and fragmentation. Supported multi-objective
methods include weighted-sum aggregation, epsilon-constraint, and the
augmented epsilon-constraint method. Problems can be solved with several
commercial and open-source optimisation solvers. Optional solver backends
include the 'gurobi' R package, which is distributed with the Gurobi Optimizer
installation <https://docs.gurobi.com/projects/optimizer/en/13.0/reference/r/setup.html>,
and the 'rcbc' R package, available from GitHub at
<https://github.com/dirkschumacher/rcbc>. For background on multi-objective
optimisati [...truncated...]
Author: Jose Salgado-Rojas [aut, cre] ,
Matias Moreno-Faguett [aut] ,
Victoria Madrid-Ayala [aut] ,
Sara Pineda-Zapata [aut] ,
Nuria Aquilue [aut]
Maintainer: Jose Salgado-Rojas <jose.salgroj@gmail.com>
Diff between multiscape versions 1.0.7 dated 2026-04-30 and 1.4.2 dated 2026-10-12
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multiscape-1.4.2/multiscape/man/selection_consistency.Rd |only multiscape-1.4.2/multiscape/man/selection_frequency.Rd |only multiscape-1.4.2/multiscape/man/selection_similarity.Rd |only multiscape-1.4.2/multiscape/man/set_method_augmecon.Rd | 401 - multiscape-1.4.2/multiscape/man/set_method_epsilon_constraint.Rd | 418 - multiscape-1.4.2/multiscape/man/set_method_weighted_sum.Rd | 332 - multiscape-1.4.2/multiscape/man/set_runs_control.Rd |only multiscape-1.4.2/multiscape/man/set_runs_grid.Rd |only multiscape-1.4.2/multiscape/man/set_runs_manual.Rd |only multiscape-1.4.2/multiscape/man/set_solver.Rd | 110 multiscape-1.4.2/multiscape/man/set_solver_cbc.Rd | 66 multiscape-1.4.2/multiscape/man/set_solver_cplex.Rd | 60 multiscape-1.4.2/multiscape/man/set_solver_gurobi.Rd | 57 multiscape-1.4.2/multiscape/man/set_solver_symphony.Rd | 57 multiscape-1.4.2/multiscape/man/sim_dist_features.Rd | 4 multiscape-1.4.2/multiscape/man/sim_features.Rd | 4 multiscape-1.4.2/multiscape/man/sim_multiaction.Rd |only multiscape-1.4.2/multiscape/man/sim_pu.Rd | 4 multiscape-1.4.2/multiscape/man/sim_pu_sf.Rd | 4 multiscape-1.4.2/multiscape/man/solution_append.Rd |only multiscape-1.4.2/multiscape/man/solution_filter.Rd |only multiscape-1.4.2/multiscape/man/solution_unique.Rd |only multiscape-1.4.2/multiscape/man/solutionset-class.Rd | 201 multiscape-1.4.2/multiscape/man/solve.Rd | 180 multiscape-1.4.2/multiscape/src/RcppExports.cpp | 64 multiscape-1.4.2/multiscape/src/init.c | 16 multiscape-1.4.2/multiscape/src/rcpp_add_action_locks.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_add_action_max_per_pu.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_add_base_variables.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_add_joint_effect_variables.cpp |only multiscape-1.4.2/multiscape/src/rcpp_add_linear_constraint.cpp | 5 multiscape-1.4.2/multiscape/src/rcpp_add_linking_w_le_sum_x.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_add_linking_x_le_w.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_add_linking_z_le_w.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_add_objective_max_net_profit.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_add_objective_max_profit.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_add_objective_min_fragmentation.cpp | 113 multiscape-1.4.2/multiscape/src/rcpp_add_objective_min_fragmentation_actions.cpp | 167 multiscape-1.4.2/multiscape/src/rcpp_add_objective_min_intervention_impact.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_add_pu_locks.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_add_target_recovery.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_effect_aggregation.cpp |only multiscape-1.4.2/multiscape/src/rcpp_objective_runtime.cpp | 53 multiscape-1.4.2/multiscape/src/rcpp_prepare_objective_max_net_profit.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_prepare_objective_max_profit.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_prepare_objective_min_cost.cpp | 1 multiscape-1.4.2/multiscape/src/rcpp_prepare_objective_min_intervention_impact.cpp | 1 multiscape-1.4.2/multiscape/tests/testthat/helper-coverage.R |only multiscape-1.4.2/multiscape/tests/testthat/helper-effects-reference.R |only multiscape-1.4.2/multiscape/tests/testthat/helper-legacy-objectives.R |only multiscape-1.4.2/multiscape/tests/testthat/helper-mock-solutionset.R |only multiscape-1.4.2/multiscape/tests/testthat/helper-new-api.R |only multiscape-1.4.2/multiscape/tests/testthat/helper-toy-problems.R | 4 multiscape-1.4.2/multiscape/tests/testthat/test-accessors-handmade-solutionset.R |only multiscape-1.4.2/multiscape/tests/testthat/test-action-cardinality.R |only multiscape-1.4.2/multiscape/tests/testthat/test-action-locks.R |only multiscape-1.4.2/multiscape/tests/testthat/test-action-max-per-pu.R |only multiscape-1.4.2/multiscape/tests/testthat/test-action-relations.R |only multiscape-1.4.2/multiscape/tests/testthat/test-action-sets.R |only multiscape-1.4.2/multiscape/tests/testthat/test-actions-effects.R |only multiscape-1.4.2/multiscape/tests/testthat/test-actions-locks-targets-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-add-actions-costs-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-add-effects-components-and-names.R |only multiscape-1.4.2/multiscape/tests/testthat/test-add-profit-objectives.R |only multiscape-1.4.2/multiscape/tests/testthat/test-add_actions.R | 225 + multiscape-1.4.2/multiscape/tests/testthat/test-add_constraint_area.R | 3 multiscape-1.4.2/multiscape/tests/testthat/test-add_constraint_budget.R | 3 multiscape-1.4.2/multiscape/tests/testthat/test-add_effects.R | 313 + multiscape-1.4.2/multiscape/tests/testthat/test-audit-cost-and-cbc-regressions.R |only multiscape-1.4.2/multiscape/tests/testthat/test-augmecon-and-selection-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-augmecon.R | 88 multiscape-1.4.2/multiscape/tests/testthat/test-bounded-raster-extraction.R |only multiscape-1.4.2/multiscape/tests/testthat/test-compile_error.R | 4 multiscape-1.4.2/multiscape/tests/testthat/test-compile_multi_obj_frag.R | 6 multiscape-1.4.2/multiscape/tests/testthat/test-compile_no_objective.R | 2 multiscape-1.4.2/multiscape/tests/testthat/test-compile_one_obj_min_cost.R | 2 multiscape-1.4.2/multiscape/tests/testthat/test-compile_reuse.R | 4 multiscape-1.4.2/multiscape/tests/testthat/test-contract_errors.R | 10 multiscape-1.4.2/multiscape/tests/testthat/test-coverage-actions-targeted.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-area-vector.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-boundary-targeted.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-build-validation.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-effects-more.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-effects-targeted.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-final-margin.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-final-utilities.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-internal-more.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-internal-targeted.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-mo-more.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-mo-targeted.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-mo-utilities.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-objective-variants.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-runtime-and-stores.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-solution-utilities-more.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-spatial-inputs.R |only multiscape-1.4.2/multiscape/tests/testthat/test-coverage-target-parsing.R |only multiscape-1.4.2/multiscape/tests/testthat/test-create-problem-hybrid-sf-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-create-problem-hybrid-sf.R |only multiscape-1.4.2/multiscape/tests/testthat/test-create-problem-spatial-and-helpers-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-create-problem-spatial-vector-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-create-problem-validation-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-create_problem-ids.R |only multiscape-1.4.2/multiscape/tests/testthat/test-create_problem.R | 202 multiscape-1.4.2/multiscape/tests/testthat/test-directed-fragmentation.R |only multiscape-1.4.2/multiscape/tests/testthat/test-effect-objective-api.R |only multiscape-1.4.2/multiscape/tests/testthat/test-effects-build-model.R |only multiscape-1.4.2/multiscape/tests/testthat/test-effects-legacy-compatibility.R |only multiscape-1.4.2/multiscape/tests/testthat/test-effects-reference-api.R |only multiscape-1.4.2/multiscape/tests/testthat/test-epsilon-constraint.R | 61 multiscape-1.4.2/multiscape/tests/testthat/test-equivalence-prioritizr-cost.R | 5 multiscape-1.4.2/multiscape/tests/testthat/test-equivalence-prioritizr-frag.R | 14 multiscape-1.4.2/multiscape/tests/testthat/test-frontier-extra-no-solver.R |only multiscape-1.4.2/multiscape/tests/testthat/test-frontier-selection.R |only multiscape-1.4.2/multiscape/tests/testthat/test-get_actions.R | 17 multiscape-1.4.2/multiscape/tests/testthat/test-get_features.R | 30 multiscape-1.4.2/multiscape/tests/testthat/test-get_pu.R | 17 multiscape-1.4.2/multiscape/tests/testthat/test-internal-helpers-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-intervention-impact-deprecation.R |only multiscape-1.4.2/multiscape/tests/testthat/test-joint-effects.R |only multiscape-1.4.2/multiscape/tests/testthat/test-linkage-analysis.R |only multiscape-1.4.2/multiscape/tests/testthat/test-load-sim-data.R |only multiscape-1.4.2/multiscape/tests/testthat/test-locked-actions-and-effects-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-locked.R | 11 multiscape-1.4.2/multiscape/tests/testthat/test-max_one_action.R | 9 multiscape-1.4.2/multiscape/tests/testthat/test-method-contracts.R | 205 multiscape-1.4.2/multiscape/tests/testthat/test-methods-validation-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-mo-numerical-regressions.R |only multiscape-1.4.2/multiscape/tests/testthat/test-net-benefit-and-final-loss.R |only multiscape-1.4.2/multiscape/tests/testthat/test-new-accessors.R |only multiscape-1.4.2/multiscape/tests/testthat/test-plot-internal-validation.R |only multiscape-1.4.2/multiscape/tests/testthat/test-plot-spatial.R |only multiscape-1.4.2/multiscape/tests/testthat/test-plot-tradeoff-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-plot.R |only multiscape-1.4.2/multiscape/tests/testthat/test-print-show-solution-classes.R |only multiscape-1.4.2/multiscape/tests/testthat/test-print-structure.R | 13 multiscape-1.4.2/multiscape/tests/testthat/test-problem-build.R |only multiscape-1.4.2/multiscape/tests/testthat/test-problem-class-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-problem-class.R |only multiscape-1.4.2/multiscape/tests/testthat/test-proto-creation-memory.R |only multiscape-1.4.2/multiscape/tests/testthat/test-repeated-calls-contract.R |only multiscape-1.4.2/multiscape/tests/testthat/test-restoration_needed.R | 9 multiscape-1.4.2/multiscape/tests/testthat/test-run-design-and-solver-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-run-design-control.R |only multiscape-1.4.2/multiscape/tests/testthat/test-selection-frequency-counts.R |only multiscape-1.4.2/multiscape/tests/testthat/test-selection-objective-evaluation.R |only multiscape-1.4.2/multiscape/tests/testthat/test-set-solver-solve.R |only multiscape-1.4.2/multiscape/tests/testthat/test-set-solver.R |only multiscape-1.4.2/multiscape/tests/testthat/test-solution-management-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-solution-management.R |only multiscape-1.4.2/multiscape/tests/testthat/test-solution-structure.R | 27 multiscape-1.4.2/multiscape/tests/testthat/test-solve-method-errors.R | 2 multiscape-1.4.2/multiscape/tests/testthat/test-solve-multiobjective.R | 11 multiscape-1.4.2/multiscape/tests/testthat/test-solve-single.R | 9 multiscape-1.4.2/multiscape/tests/testthat/test-solve_requires_method.R | 4 multiscape-1.4.2/multiscape/tests/testthat/test-solver-effects.R |only multiscape-1.4.2/multiscape/tests/testthat/test-solver-parameters.R |only multiscape-1.4.2/multiscape/tests/testthat/test-spatial-plot-more.R |only multiscape-1.4.2/multiscape/tests/testthat/test-spatial-relations-extra.R |only multiscape-1.4.2/multiscape/tests/testthat/test-spatial-relations.R |only multiscape-1.4.2/multiscape/tests/testthat/toy_multiaction_semantics.R |only multiscape-1.4.2/multiscape/vignettes |only 305 files changed, 15040 insertions(+), 9191 deletions(-)
Title: Convert Almost Any Plot to a 'grob' or 'ggplot' Object
Description: Convert a plot to a 'grob' or a 'ggplot' object so that it joins the
'grid' and 'ggplot2' ecosystem. The input can be a plot call written as a
formula or an expression, a function that draws to a graphics device, a
graphic object produced by another package, or a plot captured by
'grDevices::recordPlot'. Output of 'base' graphics is redrawn with
'gridGraphics', so plots from different graphics systems can be arranged,
aligned, annotated and inset with packages such as 'aplot' and 'patchwork'.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggplotify versions 0.1.3 dated 2025-09-20 and 0.1.4 dated 2026-10-12
ggplotify-0.1.3/ggplotify/inst/doc/ggplotify.Rmd |only ggplotify-0.1.3/ggplotify/vignettes/ggplotify.Rmd |only ggplotify-0.1.4/ggplotify/DESCRIPTION | 27 ggplotify-0.1.4/ggplotify/MD5 | 46 - ggplotify-0.1.4/ggplotify/NAMESPACE | 99 +- ggplotify-0.1.4/ggplotify/NEWS.md | 270 +++--- ggplotify-0.1.4/ggplotify/R/as-ggplot.R | 138 +-- ggplotify-0.1.4/ggplotify/R/as-grob.R | 408 +++++----- ggplotify-0.1.4/ggplotify/R/ggplotify-package.R | 6 ggplotify-0.1.4/ggplotify/R/grid-draw.R | 36 ggplotify-0.1.4/ggplotify/R/plot_fun.R | 80 +- ggplotify-0.1.4/ggplotify/R/rotate.R | 70 - ggplotify-0.1.4/ggplotify/build/vignette.rds |binary ggplotify-0.1.4/ggplotify/inst/doc/ggplotify.R | 227 +++-- ggplotify-0.1.4/ggplotify/inst/doc/ggplotify.html | 827 +++++++++++++-------- ggplotify-0.1.4/ggplotify/inst/doc/ggplotify.qmd |only ggplotify-0.1.4/ggplotify/man/as-grob.Rd | 182 ++-- ggplotify-0.1.4/ggplotify/man/as.ggplot.Rd | 70 - ggplotify-0.1.4/ggplotify/man/base2grob.Rd | 52 - ggplotify-0.1.4/ggplotify/man/ggplotify-package.Rd | 9 ggplotify-0.1.4/ggplotify/man/grid2grob.Rd | 40 - ggplotify-0.1.4/ggplotify/tests |only ggplotify-0.1.4/ggplotify/vignettes/ggplotify.qmd |only 23 files changed, 1513 insertions(+), 1074 deletions(-)
Title: Fine-Tune Small Language Models with LoRA from R
Description: Fine-tune small (100M to 3B parameter) causal language models
with LoRA (Low-Rank Adaptation) from R. Datasets are mapped to
chat-format prompts and responses, training runs in a background
'Python' process built on Hugging Face 'transformers' and 'peft', and a
'shiny' app offers drag-and-drop dataset upload and column mapping.
'Python' dependencies are declared through 'reticulate' and resolved
automatically on first use.
Author: Tejas Patel [aut, cre]
Maintainer: Tejas Patel <algocrat@gmail.com>
Diff between dragonfarm versions 0.3.3 dated 2026-10-07 and 0.3.4 dated 2026-10-12
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 10 ++++++++++ tests/testthat/test-run.R | 7 +++++-- 4 files changed, 21 insertions(+), 8 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-22 1.21
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-02 1.1
2014-10-22 1.0.3
2014-02-19 1.0.2
2014-01-08 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-10 1.33.0
2018-04-16 1.32.1
2017-05-29 1.32.0
2016-10-25 1.31.0
2016-01-28 1.30.3
2015-07-11 1.30.2
2015-06-19 1.30.1
2013-11-13 1.20.0
2011-12-15 1.10.0
2011-07-26 1.00.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-23 1.0-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-23 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-27 0.3.3
2020-04-03 0.3.2
2018-10-30 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-13 1.2.5
2013-08-13 1.2
2012-11-20 1.1
2012-08-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-09 0.2.0
2019-02-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-11 0.9.2
2015-10-07 0.9.1
2014-07-02 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-12 0.8.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-11 0.1.0
Title: Log Execution of Scripts
Description: Logging of scripts suitable for clinical trials using
'Quarto' to create nice human readable logs. 'whirl' enables
execution of scripts in batch, while simultaneously creating logs for
the execution of each script, and providing an overview summary log of
the entire batch execution.
Author: Aksel Thomsen [aut, cre],
Lovemore Gakava [aut],
Cervan Girard [aut],
Kristian Troejelsgaard [aut],
Steffen Falgreen Larsen [aut],
Vladimir Obucina [aut],
Michael Svingel [aut],
Skander Mulder [aut],
Oliver Lundsgaard [aut],
Novo Nordisk A/S [cph]
Maintainer: Aksel Thomsen <oath@novonordisk.com>
Diff between whirl versions 0.3.2 dated 2026-01-21 and 0.3.3 dated 2026-10-12
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Title: Market Structure, Concentration and Inequality Measures
Description: Based on individual market shares of all participants in a
market or space, the package offers a set of different structural and
concentration measures frequently - and not so frequently - used in research
and in practice. Measures can be calculated in groups or individually.
The calculated measure or the resulting vector in table format should help
practitioners make more informed decisions. Methods used in this package are
from:
1. Chang, E. J., Guerra, S. M., de Souza Penaloza, R. A. & Tabak, B. M.
(2005) "Banking concentration: the Brazilian case".
2. Cobham, A. and A. Summer (2013). "Is It All About the Tails? The
Palma Measure of Income Inequality".
3. Garcia Alba Idunate, P. (1994). "Un Indice de dominancia para el
analisis de la estructura de los mercados".
4. Ginevicius, R. and S. Cirba (2009). "Additive measurement of market
concentration" <doi:10.3846/1611-1699.2009.10.191-198>.
5. Herfindahl, O. C. (1950), "Concentration in the steel industry"
(PhD thesis).
6 [...truncated...]
Author: Andreas Schneider [aut, cre] ,
Sebastian Wojcik [rev],
Christopher T. Kenny [rev]
Maintainer: Andreas Schneider <schneiderconsultingpy@gmail.com>
Diff between concstats versions 0.1.6 dated 2023-03-30 and 0.2.1 dated 2026-10-12
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-13 1.0.2
2019-10-18 1.0.1
2019-08-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-04 1.0.1
2016-04-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-05 0.3-1
2017-07-19 0.2
2017-04-19 0.1-2
2017-04-04 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-29 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-25 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-10 2.0-1
2020-09-03 2.0
2019-12-11 1.4
2016-01-13 1.3
2014-05-19 1.2
2013-11-13 1.1
2013-03-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-29 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-17 1.0.3
2017-05-18 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-12-13 2.2
2018-10-05 2.1
2018-06-26 2.0
2015-12-14 1.1
2014-04-04 1.0.1
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2017-07-08 1.1
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2016-05-31 2016.5.31
2015-06-26 2015.6.25
2012-04-04 2012.04-0
2007-09-30 0.4
2006-09-05 0.3
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2015-07-01 1.0
Title: Vertex Pool Topology for Well-Known Geometry
Description: Establishes and maintains vertex pool topology for geometry
handled by 'wk'. Segments are the atomic unit, vertices are shared via
integer references into a pool. Topology is made discoverable via coincident
vertex detection while not requiring modification of the input data.
Topological data models follow principles described in Worboys and
Duckham (2004, ISBN:978-0415283755). The edge-based topology geometry decomposed
into vertices and directed edge pairs is a simplification of the quad-edge case in
Guibas & Stolfi (1985) <doi:10.1145/282918.282923>.
Author: Michael Sumner [aut, cre, cph]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between wkpool versions 0.3.0 dated 2026-03-05 and 0.4.0 dated 2026-10-12
wkpool-0.3.0/wkpool/man/hole_points.Rd |only wkpool-0.3.0/wkpool/tests/testthat/Rplots.pdf |only wkpool-0.4.0/wkpool/DESCRIPTION | 19 wkpool-0.4.0/wkpool/MD5 | 121 +- wkpool-0.4.0/wkpool/NAMESPACE | 49 wkpool-0.4.0/wkpool/NEWS.md | 253 ++++ wkpool-0.4.0/wkpool/R/arc_node.R | 251 ++-- wkpool-0.4.0/wkpool/R/cpp11.R |only wkpool-0.4.0/wkpool/R/establish_topology.R | 66 - wkpool-0.4.0/wkpool/R/merge_coincident.R | 659 ++++++++--- wkpool-0.4.0/wkpool/R/round_trip.R | 336 +++-- wkpool-0.4.0/wkpool/R/wk-handle.R |only wkpool-0.4.0/wkpool/R/wkpool-package.R | 1 wkpool-0.4.0/wkpool/R/wkpool.R | 326 ++++- wkpool-0.4.0/wkpool/R/wkpool_tri.R |only wkpool-0.4.0/wkpool/README.md | 115 + wkpool-0.4.0/wkpool/build/partial.rdb |binary wkpool-0.4.0/wkpool/build/vignette.rds |binary wkpool-0.4.0/wkpool/inst/WORDLIST | 49 wkpool-0.4.0/wkpool/inst/doc/triangulation.R |only wkpool-0.4.0/wkpool/inst/doc/triangulation.Rmd |only wkpool-0.4.0/wkpool/inst/doc/triangulation.html |only wkpool-0.4.0/wkpool/inst/doc/wkpool-vignette-segments.R | 7 wkpool-0.4.0/wkpool/inst/doc/wkpool-vignette-segments.Rmd | 30 wkpool-0.4.0/wkpool/inst/doc/wkpool-vignette-segments.html | 80 - wkpool-0.4.0/wkpool/inst/doc/wkpool.R | 43 wkpool-0.4.0/wkpool/inst/doc/wkpool.Rmd | 114 + wkpool-0.4.0/wkpool/inst/doc/wkpool.html | 222 ++- wkpool-0.4.0/wkpool/man/arc_node_summary.Rd | 10 wkpool-0.4.0/wkpool/man/arcs_to_wkt.Rd | 19 wkpool-0.4.0/wkpool/man/as_arcs.Rd | 10 wkpool-0.4.0/wkpool/man/as_pslg.Rd | 25 wkpool-0.4.0/wkpool/man/classify_cycles.Rd | 14 wkpool-0.4.0/wkpool/man/cycle_signed_area.Rd | 2 wkpool-0.4.0/wkpool/man/cycles_to_wkt.Rd | 22 wkpool-0.4.0/wkpool/man/establish_topology.Rd | 15 wkpool-0.4.0/wkpool/man/figures |only wkpool-0.4.0/wkpool/man/find_arcs.Rd | 10 wkpool-0.4.0/wkpool/man/find_cycles.Rd | 9 wkpool-0.4.0/wkpool/man/find_internal_boundaries.Rd | 4 wkpool-0.4.0/wkpool/man/find_nodes.Rd | 9 wkpool-0.4.0/wkpool/man/merge_coincident.Rd | 74 + wkpool-0.4.0/wkpool/man/new_wkpool.Rd |only wkpool-0.4.0/wkpool/man/new_wkpool_tri.Rd |only wkpool-0.4.0/wkpool/man/plot.wkpool_tri.Rd |only wkpool-0.4.0/wkpool/man/pool_holes.Rd |only wkpool-0.4.0/wkpool/man/pool_triangles.Rd |only wkpool-0.4.0/wkpool/man/pool_triangulate.Rd |only wkpool-0.4.0/wkpool/man/segments_to_wkt.Rd | 8 wkpool-0.4.0/wkpool/man/topology_report.Rd | 5 wkpool-0.4.0/wkpool/man/vertex_degree.Rd | 9 wkpool-0.4.0/wkpool/man/wk_handle.wkpool.Rd |only wkpool-0.4.0/wkpool/man/wkpool-accessors.Rd | 13 wkpool-0.4.0/wkpool/man/wkpool-crs.Rd |only wkpool-0.4.0/wkpool/man/wkpool-package.Rd | 8 wkpool-0.4.0/wkpool/man/wkpool.Rd |only wkpool-0.4.0/wkpool/src |only wkpool-0.4.0/wkpool/tests/testthat/test-arcs-kernel.R |only wkpool-0.4.0/wkpool/tests/testthat/test-crs.R |only wkpool-0.4.0/wkpool/tests/testthat/test-cycles.R | 91 + wkpool-0.4.0/wkpool/tests/testthat/test-emit.R |only wkpool-0.4.0/wkpool/tests/testthat/test-exact.R |only wkpool-0.4.0/wkpool/tests/testthat/test-guard-boundaries.R |only wkpool-0.4.0/wkpool/tests/testthat/test-handle.R |only wkpool-0.4.0/wkpool/tests/testthat/test-path.R |only wkpool-0.4.0/wkpool/tests/testthat/test-period-x.R |only wkpool-0.4.0/wkpool/tests/testthat/test-quotient.R |only wkpool-0.4.0/wkpool/tests/testthat/test-roundtrip-coverage.R | 2 wkpool-0.4.0/wkpool/tests/testthat/test-roundtrip.R | 16 wkpool-0.4.0/wkpool/tests/testthat/test-verbs-vectorised.R |only wkpool-0.4.0/wkpool/tests/testthat/test-vx-match.R |only wkpool-0.4.0/wkpool/tests/testthat/test-wkpool-class.R | 16 wkpool-0.4.0/wkpool/tests/testthat/test-wkpool-tri.R |only wkpool-0.4.0/wkpool/vignettes/triangulation.Rmd |only wkpool-0.4.0/wkpool/vignettes/wkpool-vignette-segments.Rmd | 30 wkpool-0.4.0/wkpool/vignettes/wkpool.Rmd | 114 + 76 files changed, 2391 insertions(+), 885 deletions(-)
Title: Construct Mixed Type Data Structures with Vectors of Vectors
Description: Mixed type vectors are useful for combining semantically similar
classes. Some examples of semantically related classes include time across
different granularities (e.g. daily, monthly, annual) and probability
distributions (e.g. Normal, Uniform, Poisson). These groups of vector types
typically share common statistical operations which vary in results with the
attributes of each vector. The 'vecvec' data structure facilitates efficient
storage and computation across multiple vectors within the same object.
Author: Mitchell O'Hara-Wild [aut, cre]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between vecvec versions 1.3.0 dated 2026-08-20 and 1.4.0 dated 2026-10-12
DESCRIPTION | 6 +- MD5 | 31 +++++++----- NAMESPACE | 3 + NEWS.md | 22 +++++++++ R/apply.R | 23 +++++++-- R/array.R |only R/hook.R | 15 ++++++ R/predicates.R | 94 +++++++++++++++------------------------ R/utils.R | 3 + R/vctrs.R | 23 ++++++--- R/vecvec.R | 6 +- man/vecvec_abind.Rd |only tests/testthat/test-apply.R | 25 ++++++++++ tests/testthat/test-bind.R |only tests/testthat/test-format.R | 4 + tests/testthat/test-predicates.R | 40 ++++++++++++++++ tests/testthat/test-vctrs.R | 41 +++++++++++++++++ tests/testthat/test-vecvec.R | 12 ++++ 18 files changed, 261 insertions(+), 87 deletions(-)
Title: Imputing Responder Proportions from Continuous Outcomes
Description: Express meta-analyses of continuous trial outcomes in terms of
responder risks, following the interpretability tutorial of Thorlund,
Walter, Johnston, Furukawa and Guyatt (2011) <doi:10.1002/jrsm.46>. Given
the mean change, standard deviation and sample size per arm across studies,
respondeR estimates the proportion of patients who cross a minimal important
difference (MID) threshold under a parametric model for the change scores,
and contrasts the arms as a risk difference, risk ratio, odds ratio or
number needed to treat. It provides per-study (fixed- or random-effects)
pooling with exact tail probabilities, a pooled-summary method anchored on
the within-study mean difference, median and unweighted-mean summaries, the
standardized-mean-difference to odds-ratio bridge of Anzures-Cabrera,
Sarpatwari and Higgins (2011) <doi:10.1002/sim.4298>, a threshold-free
common-language effect size, results across a range of thresholds, GRADE
summary-of-findings rows, change-score stand [...truncated...]
Author: Ahmad Sofi-Mahmudi [aut, cre]
Maintainer: Ahmad Sofi-Mahmudi <a.sofimahmudi@gmail.com>
Diff between respondeR versions 0.1.0 dated 2026-06-19 and 0.2.0 dated 2026-10-12
DESCRIPTION | 29 - MD5 | 98 ++-- NAMESPACE | 30 + NEWS.md | 118 +++++ R/data.R | 27 - R/impute-change-sd.R |only R/measures.R | 219 +++++----- R/respondeR-package.R | 16 R/responder-adapters.R |only R/responder-analysis.R | 600 +++++++++++++++++++--------- R/responder-cles.R | 29 - R/responder-core.R | 520 +++++++++++++++++------- R/responder-curve.R |only R/responder-from-effect.R |only R/responder-rd.R | 172 +++++--- R/responder-result.R |only R/responder-sof.R |only R/validate.R | 162 ++++++- R/zzz.R |only README.md | 168 +++++-- build/vignette.rds |binary data/vas_pain.rda |binary inst/CITATION | 2 inst/doc/meta-analysis-objects.R |only inst/doc/meta-analysis-objects.Rmd |only inst/doc/meta-analysis-objects.html |only inst/doc/methodology.R | 57 +- inst/doc/methodology.Rmd | 509 ++++++++++++++++------- inst/doc/methodology.html | 662 ++++++++++++++++++++----------- inst/doc/respondeR.R | 61 +- inst/doc/respondeR.Rmd | 185 ++++---- inst/doc/respondeR.html | 315 ++++++++------ inst/shiny-apps/ResponderAnalysis/app.R | 200 ++++++--- man/as_responder_data.Rd |only man/estimate_change_cor.Rd |only man/format_responder_results.Rd | 17 man/impute_change_sd.Rd |only man/plot.responder_curve.Rd |only man/respondeR-package.Rd | 20 man/responder_analysis.Rd | 258 ++++++++---- man/responder_cles.Rd | 10 man/responder_curve.Rd |only man/responder_from_effect.Rd |only man/responder_proportions.Rd | 12 man/responder_rd_individual.Rd | 47 +- man/responder_result.Rd |only man/responder_sof.Rd |only man/vas_pain.Rd | 28 - tests/testthat/test-adapters.R |only tests/testthat/test-core.R | 180 ++++++-- tests/testthat/test-data.R | 2 tests/testthat/test-features.R |only tests/testthat/test-format.R | 11 tests/testthat/test-from-effect.R |only tests/testthat/test-measures.R | 80 ++- tests/testthat/test-responder-analysis.R | 373 +++++++++++++---- tests/testthat/test-robustness.R | 135 +++++- tests/testthat/test-validate.R | 34 + vignettes/meta-analysis-objects.Rmd |only vignettes/methodology.Rmd | 509 ++++++++++++++++------- vignettes/respondeR.Rmd | 185 ++++---- 61 files changed, 4169 insertions(+), 1911 deletions(-)
Title: Automatic Generation of Qualitative Color Palettes
Description: Automatic generation of maximally distinct qualitative color palettes,
optionally tailored to color deficiency. A set of colors or a subspace of a
color space is used as input and a final palette of specified size is
generated by picking colors that maximize the minimum pairwise difference
among the chosen colors. Adaptations to color vision deficiency,
background colors, and white points are supported.
Author: Johan Larsson [aut, cre]
Maintainer: Johan Larsson <johan@jolars.co>
Diff between qualpalr versions 2.0.0 dated 2026-01-29 and 2.1.0 dated 2026-10-12
qualpalr-2.0.0/qualpalr/R/RcppExports.R |only qualpalr-2.0.0/qualpalr/src/RcppExports.cpp |only qualpalr-2.1.0/qualpalr/DESCRIPTION | 10 qualpalr-2.1.0/qualpalr/MD5 | 43 - qualpalr-2.1.0/qualpalr/NAMESPACE | 2 qualpalr-2.1.0/qualpalr/NEWS.md | 16 qualpalr-2.1.0/qualpalr/R/convert_colors.R |only qualpalr-2.1.0/qualpalr/R/cpp11.R |only qualpalr-2.1.0/qualpalr/R/qualpal.R | 17 qualpalr-2.1.0/qualpalr/R/qualpalr.R | 1 qualpalr-2.1.0/qualpalr/R/utils.R | 21 qualpalr-2.1.0/qualpalr/build/vignette.rds |binary qualpalr-2.1.0/qualpalr/inst/doc/comparisons.html | 72 +- qualpalr-2.1.0/qualpalr/inst/doc/introduction.html | 151 +++-- qualpalr-2.1.0/qualpalr/inst/include/qualpal/qualpal.h | 23 qualpalr-2.1.0/qualpalr/man/convert_colors.Rd | 2 qualpalr-2.1.0/qualpalr/man/qualpal.Rd | 17 qualpalr-2.1.0/qualpalr/src/Makevars | 3 qualpalr-2.1.0/qualpalr/src/convert.h | 4 qualpalr-2.1.0/qualpalr/src/cpp11.cpp |only qualpalr-2.1.0/qualpalr/src/qualpal/color_grid.h | 115 ++++ qualpalr-2.1.0/qualpalr/src/qualpal/continuous_refinement.cpp |only qualpalr-2.1.0/qualpalr/src/qualpal/continuous_refinement.h |only qualpalr-2.1.0/qualpalr/src/qualpal/qualpal.cpp | 256 +++++++++- qualpalr-2.1.0/qualpalr/src/qualpalr.cpp | 230 ++++---- qualpalr-2.1.0/qualpalr/tests/testthat/test_qualpal.R | 50 + 26 files changed, 761 insertions(+), 272 deletions(-)
Title: Missingness Alleviation for Network Analysis
Description: Provides functionality for estimating cross-sectional network structures representing partial correlations while accounting for missing data. Networks are estimated via neighborhood selection or regularization, with model selection guided by information criteria. Missing data can be handled primarily via multiple imputation or a maximum likelihood-based approach, as demonstrated by Nehler and Schultze (2025) <doi:10.1080/00273171.2025.2503833> and Nehler and Schultze (2026) <doi:10.1037/met0000828>. Deletion-based approaches are also available but play a secondary role.
Author: Kai Jannik Nehler [aut, cre]
Maintainer: Kai Jannik Nehler <nehler@psych.uni-frankfurt.de>
Diff between mantar versions 0.3.1 dated 2026-07-08 and 0.3.2 dated 2026-10-12
DESCRIPTION | 8 - MD5 | 18 +- NEWS.md | 5 build/partial.rdb |binary build/stage23.rdb |binary build/vignette.rds |binary inst/doc/mantar.R | 27 +++- inst/doc/mantar.Rmd | 35 ++++- inst/doc/mantar.html | 317 +++++++++++++++++++++++++++------------------------ vignettes/mantar.Rmd | 35 ++++- 10 files changed, 265 insertions(+), 180 deletions(-)
Title: Grammar of Graphics and Plot Helpers for Time Series
Visualization
Description: Extends the capabilities of 'ggplot2' by providing grammatical
elements and plot helpers designed for visualizing temporal patterns. The
package implements a grammar of temporal graphics, which leverages calendar
structures to highlight changes over time. The package also provides plot
helper functions to quickly produce commonly used time series graphics,
including time plots, season plots, and seasonal sub-series plots.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Cynthia A. Huang [aut] ,
Matthew Kay [aut] ,
Rob Hyndman [aut] ,
Earo Wang [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between ggtime versions 1.0.0 dated 2026-09-01 and 1.1.0 dated 2026-10-12
DESCRIPTION | 16 MD5 | 71 +- NAMESPACE | 15 NEWS.md | 56 + R/coord-calendar.R | 121 +++- R/coord-loop.R | 136 ++++ R/geom-candlestick.R |only R/loop-cut.R | 16 R/plot-helpers.R | 471 ++++------------ R/plot-mixtime.R |only R/plot-tsibble.R | 2 R/scale-time.R | 34 - R/transform.R | 2 R/utils.R | 144 ---- man/coord_calendar.Rd | 19 man/coord_loop.Rd | 3 man/draw_key_candlestick.Rd |only man/figures/README-coordloop-1.png |binary man/figures/README-scalemixtime-1.png |binary man/figures/README-seasonplot-1.png |binary man/geom_candlestick.Rd |only man/gg_lag.Rd | 11 man/gg_season.Rd | 20 man/gg_subseries.Rd | 14 man/gg_tsdisplay.Rd | 2 man/gg_tsresiduals.Rd | 2 man/scale_candlestick.Rd |only man/scale_mixtime.Rd | 11 man/transform_warp.Rd | 3 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/coord-calendar/granule-labels.svg | 70 +- tests/testthat/helper-mixtime.R |only tests/testthat/test-coord-calendar.R | 128 ++++ tests/testthat/test-coord-loop.R | 68 +- tests/testthat/test-geom-candlestick.R |only tests/testthat/test-geom-time-line.R | 1 tests/testthat/test-gg-lag.R |only tests/testthat/test-gg-subseries.R |only tests/testthat/test-loop-cut.R | 5 tests/testthat/test-plot-helpers.R | 381 ++++++++++++ tests/testthat/test-scale-time.R | 43 + 41 files changed, 1192 insertions(+), 673 deletions(-)
Title: Distributed Online Goodness-of-Fit Tests for Distributed
Datasets
Description: Distributed Online Goodness-of-Fit Test can process the distributed datasets. The philosophy of the package is described in Guo G.(2024) <doi:10.1016/j.apm.2024.115709>.
Author: Guangbao Guo [aut, cre] ,
Di Chang [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between Dogoftest versions 0.3 dated 2025-07-29 and 0.4.2 dated 2026-10-12
Dogoftest-0.3/Dogoftest/R/CVMgof2.R |only Dogoftest-0.3/Dogoftest/R/KSgof2.R |only Dogoftest-0.3/Dogoftest/R/cvmgof.R |only Dogoftest-0.3/Dogoftest/R/ksgof.R |only Dogoftest-0.3/Dogoftest/man/CVMgof2.Rd |only Dogoftest-0.3/Dogoftest/man/KSgof2.Rd |only Dogoftest-0.3/Dogoftest/man/cvmgof.Rd |only Dogoftest-0.3/Dogoftest/man/ksgof.Rd |only Dogoftest-0.4.2/Dogoftest/DESCRIPTION | 9 - Dogoftest-0.4.2/Dogoftest/MD5 | 72 ++++++++--- Dogoftest-0.4.2/Dogoftest/NAMESPACE | 25 +++- Dogoftest-0.4.2/Dogoftest/R/AD2gof.R | 103 ++++++++-------- Dogoftest-0.4.2/Dogoftest/R/ADgof.R | 135 +++++++++++----------- Dogoftest-0.4.2/Dogoftest/R/CVM2gof.R | 103 ++++++++-------- Dogoftest-0.4.2/Dogoftest/R/CVMgof.R |only Dogoftest-0.4.2/Dogoftest/R/DAD.R |only Dogoftest-0.4.2/Dogoftest/R/DAD2.R |only Dogoftest-0.4.2/Dogoftest/R/DCVM.R |only Dogoftest-0.4.2/Dogoftest/R/DCvM2.R |only Dogoftest-0.4.2/Dogoftest/R/DKS.R |only Dogoftest-0.4.2/Dogoftest/R/DKS2.R |only Dogoftest-0.4.2/Dogoftest/R/DPECVM.R |only Dogoftest-0.4.2/Dogoftest/R/DPECVM2.R |only Dogoftest-0.4.2/Dogoftest/R/KS2gof.R | 78 +++++------- Dogoftest-0.4.2/Dogoftest/R/KSgof.R |only Dogoftest-0.4.2/Dogoftest/R/PE2AD.R |only Dogoftest-0.4.2/Dogoftest/R/PE2CVM.R |only Dogoftest-0.4.2/Dogoftest/R/PE2KS.R |only Dogoftest-0.4.2/Dogoftest/R/PEAD.R |only Dogoftest-0.4.2/Dogoftest/R/PECVM.R |only Dogoftest-0.4.2/Dogoftest/R/PEKS.R |only Dogoftest-0.4.2/Dogoftest/R/Wgof.R | 2 Dogoftest-0.4.2/Dogoftest/R/data.R |only Dogoftest-0.4.2/Dogoftest/R/run_FDP_sim.R |only Dogoftest-0.4.2/Dogoftest/R/run_custom_tests.R |only Dogoftest-0.4.2/Dogoftest/R/simpleCvMgof.R | 50 +++++--- Dogoftest-0.4.2/Dogoftest/man/AD2gof.Rd | 49 +++---- Dogoftest-0.4.2/Dogoftest/man/ADgof.Rd | 70 +++++------ Dogoftest-0.4.2/Dogoftest/man/CVM2gof.Rd | 52 +++----- Dogoftest-0.4.2/Dogoftest/man/CVMgof.Rd |only Dogoftest-0.4.2/Dogoftest/man/DAD.Rd |only Dogoftest-0.4.2/Dogoftest/man/DAD2.Rd |only Dogoftest-0.4.2/Dogoftest/man/DCVM.Rd |only Dogoftest-0.4.2/Dogoftest/man/DCVM2.Rd |only Dogoftest-0.4.2/Dogoftest/man/DKS.Rd |only Dogoftest-0.4.2/Dogoftest/man/DKS2.Rd |only Dogoftest-0.4.2/Dogoftest/man/DPECVM.Rd |only Dogoftest-0.4.2/Dogoftest/man/DPECVM2.Rd |only Dogoftest-0.4.2/Dogoftest/man/KS2gof.Rd | 48 +++---- Dogoftest-0.4.2/Dogoftest/man/KSgof.Rd |only Dogoftest-0.4.2/Dogoftest/man/PE2AD.Rd |only Dogoftest-0.4.2/Dogoftest/man/PE2CVM.Rd |only Dogoftest-0.4.2/Dogoftest/man/PE2KS.Rd |only Dogoftest-0.4.2/Dogoftest/man/PECVM.Rd |only Dogoftest-0.4.2/Dogoftest/man/PEKS.Rd |only Dogoftest-0.4.2/Dogoftest/man/WhiteWine.Rd | 82 ++++++------- Dogoftest-0.4.2/Dogoftest/man/run_FDP_sim.Rd |only Dogoftest-0.4.2/Dogoftest/man/run_custom_tests.Rd |only Dogoftest-0.4.2/Dogoftest/man/simpleCvMgof.Rd | 28 ++-- 59 files changed, 470 insertions(+), 436 deletions(-)
Title: Changepoints for a Range of Penalties (CROPS)
Description: Implements the Changepoints for a Range of Penalties (CROPS) algorithm of Haynes et al. (2017) <doi:10.1080/10618600.2015.1116445> for finding all of the optimal segmentations for multiple penalty values over a continuous range.
Author: Daniel Grose [aut, cre],
Paul Fearnhead [aut],
Idris Eckley [ctb]
Maintainer: Daniel Grose <dan.grose@lancaster.ac.uk>
Diff between crops versions 1.0.4 dated 2026-09-04 and 1.0.5 dated 2026-10-12
crops-1.0.4/crops/man/plot-methods.Rd |only crops-1.0.4/crops/man/print-methods.Rd |only crops-1.0.4/crops/man/segmentations-methods.Rd |only crops-1.0.4/crops/man/subset-methods.Rd |only crops-1.0.4/crops/man/summary-methods.Rd |only crops-1.0.4/crops/man/unique-methods.Rd |only crops-1.0.5/crops/DESCRIPTION | 12 - crops-1.0.5/crops/MD5 | 23 -- crops-1.0.5/crops/NAMESPACE | 11 crops-1.0.5/crops/NEWS.md |only crops-1.0.5/crops/R/crops.R | 98 +++----- crops-1.0.5/crops/R/crops.class.R | 282 +------------------------ crops-1.0.5/crops/R/utils.R | 8 crops-1.0.5/crops/build/partial.rdb |binary crops-1.0.5/crops/man/crops.Rd | 81 ++----- crops-1.0.5/crops/man/crops.class-class.Rd |only crops-1.0.5/crops/man/crops.class.Rd |only 17 files changed, 109 insertions(+), 406 deletions(-)
Title: Physics-Based Models for Acoustic Target Strength
Description: Acoustic target strength (TS) represents the intensity of an
echo returning from an individual scatterer such as bubbles, fish, or
zooplankton. TS can be used to convert integrated or volumetric
backscatter collected from fisheries acoustic surveys into units of
number density (e.g. animals per m^3), abundance (e.g. number of
animals), and biomass (e.g. kg). This parameter can also be used to
aid in classifying backscatter, such as separating likely echoes of
large predatory fish (e.g. adult cod) from smaller prey (e.g. shrimp).
One way to estimate TS is to use physics-based models to calculate
theoretical TS that comprise exact and approximate solutions as well
as analytical approaches. The models provided can help provide TS
estimates over broad statistical distributions of model parameters.
Applications are described by Lucca et al. (2023)
<doi:10.1121/10.0022459>, with fisheries-acoustics principles from
Simmonds and MacLennan (2005) <doi:10.1002/9780470995303>.
Author: Brandyn Lucca [aut, cre, cph] ,
Arnie Lee Van Buren [ctb, cph] ,
Jeffrey E. Boisvert [ctb]
Maintainer: Brandyn Lucca <brandyn.lucca@gmail.com>
Diff between acousticTS versions 2.0.6 dated 2026-09-26 and 2.0.8 dated 2026-10-12
DESCRIPTION | 8 MD5 | 103 ++++---- NEWS.md | 20 - R/RcppExports.R | 4 R/bessel-cylindrical.R | 17 - R/model-krm.R | 24 - R/model-sdwba.R | 56 ++-- R/model-sphms.R | 12 R/scatterer_reforge.R | 43 --- R/spheroidal.R | 4 R/utilities-geometry.R | 96 ++++--- R/validation.R | 14 - README.md | 27 +- man/KRM.Rd | 8 man/SDWBA.Rd | 32 +- man/Smn.Rd | 4 man/jc.Rd | 4 man/yc.Rd | 13 - src/Makevars.in | 5 src/Makevars.win.in | 5 src/RcppExports.cpp | 11 src/bessel.cpp | 35 +- src/goodman_stern.cpp | 49 ---- src/legendre.cpp | 44 --- src/precision.h | 7 src/prolate_swf.f90 | 18 - src/psms.cpp | 2 src/psms_backscatter.h | 68 ++--- src/psms_linear_systems.h | 89 ++++--- src/psms_rmn.h | 64 ++--- src/psms_smn.h | 34 +- src/psms_support.h | 4 src/svd_solve.h | 2 src/test-runner.cpp |only tests/testthat/native-solvers.h |only tests/testthat/test-bbfm.R | 5 tests/testthat/test-bessel_functions.R | 200 ++++++++++++++++ tests/testthat/test-dwba_profiles.R | 201 +++++++++++++--- tests/testthat/test-essms.R | 45 +++ tests/testthat/test-harmonics.R | 37 +++ tests/testthat/test-krm_modal_reference.R |only tests/testthat/test-model_helper_branches.R | 176 ++++++++++++++ tests/testthat/test-model_registry.R | 110 ++++++++ tests/testthat/test-native_kernels.R |only tests/testthat/test-psms_helpers.R | 181 ++++++++++++++ tests/testthat/test-scatterer_reforge.R | 123 ++++++++++ tests/testthat/test-sdwba_pipeline.R |only tests/testthat/test-shape_creation.R | 33 ++ tests/testthat/test-shape_manipulation.R | 208 ++++++++++++++++ tests/testthat/test-simulation.R | 173 +++++++++++++- tests/testthat/test-spheroidal.R | 343 ++++++++++++++++++++++++++++ tests/testthat/test-target_strength.R | 49 +++- tests/testthat/test-tmm.R | 95 +++++++ tests/testthat/test-tmm_internal_helpers.R | 229 ++++++++++++++++++ tests/testthat/test-utilities_validation.R | 113 +++++++++ 55 files changed, 2706 insertions(+), 541 deletions(-)
Title: Price Index Aggregation
Description: Most price indexes are made with a two-step procedure, where
period-over-period elementary indexes are first calculated for a collection
of elementary aggregates at each point in time, and then aggregated according
to a price index aggregation structure. These indexes can then be chained
together to form a time series that gives the evolution of prices with
respect to a fixed base period. This package contains a collection of
functions that revolve around this work flow, making it easy to build
standard price indexes, and implement the methods described by
Balk (2008, <doi:10.1017/CBO9780511720758>), von der Lippe (2007,
<doi:10.3726/978-3-653-01120-3>), and the CPI manual (2020,
<doi:10.5089/9781484354841.069>) and PPI manual
(2004, <doi:10.5089/9781589063044.069>) for bilateral price indexes.
Author: Steve Martin [aut, cre, cph]
Maintainer: Steve Martin <marberts@protonmail.com>
Diff between piar versions 0.10.1 dated 2026-07-30 and 0.11.0 dated 2026-10-12
piar-0.10.1/piar/LICENSE |only piar-0.11.0/piar/DESCRIPTION | 21 piar-0.11.0/piar/MD5 | 323 ++++---- piar-0.11.0/piar/NAMESPACE | 35 piar-0.11.0/piar/NEWS.md | 26 piar-0.11.0/piar/R/aggregate.piar_index.R | 45 - piar-0.11.0/piar/R/aggregation_structure.R | 6 piar-0.11.0/piar/R/as_aggregation_structure.R | 2 piar-0.11.0/piar/R/as_index.R | 3 piar-0.11.0/piar/R/back_period.R | 9 piar-0.11.0/piar/R/chain.R | 4 piar-0.11.0/piar/R/coerce-aggregation_structure.R | 23 piar-0.11.0/piar/R/coerce-index.R | 25 piar-0.11.0/piar/R/combine_classifications.R | 2 piar-0.11.0/piar/R/contrib.R | 2 piar-0.11.0/piar/R/cut.piar_aggregation_structure.R | 2 piar-0.11.0/piar/R/elementary_index.R | 44 - piar-0.11.0/piar/R/emean.R | 11 piar-0.11.0/piar/R/expand_classification.R | 6 piar-0.11.0/piar/R/extract.piar_index.R | 54 + piar-0.11.0/piar/R/geks_index.R | 15 piar-0.11.0/piar/R/gmean.R | 26 piar-0.11.0/piar/R/head.piar_index.R | 10 piar-0.11.0/piar/R/impute_prices.R | 20 piar-0.11.0/piar/R/index-class.R | 18 piar-0.11.0/piar/R/is.na.piar_index.R | 2 piar-0.11.0/piar/R/lag.piar_index.R |only piar-0.11.0/piar/R/levels.piar_aggregation_structure.R | 2 piar-0.11.0/piar/R/levels.piar_index.R | 2 piar-0.11.0/piar/R/mean.piar_index.R | 13 piar-0.11.0/piar/R/merge.piar_index.R | 2 piar-0.11.0/piar/R/outliers.R | 32 piar-0.11.0/piar/R/price_relative.R | 8 piar-0.11.0/piar/R/splice_index.R | 8 piar-0.11.0/piar/R/split.piar_index.R | 4 piar-0.11.0/piar/R/split_classification.R | 10 piar-0.11.0/piar/R/stack.piar_index.R | 2 piar-0.11.0/piar/R/time.piar_index.R | 2 piar-0.11.0/piar/R/transmute_weights.R | 46 - piar-0.11.0/piar/R/update.aggregation_structure.R | 2 piar-0.11.0/piar/R/update_weights.R | 11 piar-0.11.0/piar/R/utils.R | 99 -- piar-0.11.0/piar/R/weights.piar_aggregation_structure.R | 2 piar-0.11.0/piar/R/window.piar_index.R | 10 piar-0.11.0/piar/README.md | 117 +-- piar-0.11.0/piar/build/partial.rdb |binary piar-0.11.0/piar/build/vignette.rds |binary piar-0.11.0/piar/inst/REFERENCES.R |only piar-0.11.0/piar/inst/WORDLIST | 1 piar-0.11.0/piar/inst/doc/adjust-weights.R | 2 piar-0.11.0/piar/inst/doc/adjust-weights.Rmd | 5 piar-0.11.0/piar/inst/doc/adjust-weights.html | 2 piar-0.11.0/piar/inst/doc/contributions.R | 2 piar-0.11.0/piar/inst/doc/contributions.Rmd | 5 piar-0.11.0/piar/inst/doc/contributions.html | 259 +------ piar-0.11.0/piar/inst/doc/decomposing-indexes.R | 2 piar-0.11.0/piar/inst/doc/decomposing-indexes.Rmd | 63 - piar-0.11.0/piar/inst/doc/decomposing-indexes.html | 108 ++- piar-0.11.0/piar/inst/doc/imputation.R | 2 piar-0.11.0/piar/inst/doc/imputation.Rmd | 5 piar-0.11.0/piar/inst/doc/imputation.html | 2 piar-0.11.0/piar/inst/doc/index-number-formulas.R | 6 piar-0.11.0/piar/inst/doc/index-number-formulas.Rmd | 15 piar-0.11.0/piar/inst/doc/index-number-formulas.html | 157 ---- piar-0.11.0/piar/inst/doc/matrix-aggregation.R | 2 piar-0.11.0/piar/inst/doc/matrix-aggregation.Rmd | 5 piar-0.11.0/piar/inst/doc/matrix-aggregation.html | 114 --- piar-0.11.0/piar/inst/doc/multiple-baskets.R | 2 piar-0.11.0/piar/inst/doc/multiple-baskets.Rmd | 5 piar-0.11.0/piar/inst/doc/multiple-baskets.html | 2 piar-0.11.0/piar/inst/doc/multiple-data-sources.R | 2 piar-0.11.0/piar/inst/doc/multiple-data-sources.Rmd | 5 piar-0.11.0/piar/inst/doc/multiple-data-sources.html | 58 - piar-0.11.0/piar/inst/doc/multiple-dimensions.R | 23 piar-0.11.0/piar/inst/doc/multiple-dimensions.Rmd | 58 + piar-0.11.0/piar/inst/doc/multiple-dimensions.html | 126 +-- piar-0.11.0/piar/inst/doc/piar.R | 2 piar-0.11.0/piar/inst/doc/piar.Rmd | 16 piar-0.11.0/piar/inst/doc/piar.html | 359 ++-------- piar-0.11.0/piar/inst/doc/spatial-price-index.R | 2 piar-0.11.0/piar/inst/doc/spatial-price-index.Rmd | 5 piar-0.11.0/piar/inst/doc/spatial-price-index.html | 98 -- piar-0.11.0/piar/inst/doc/subperiods.R | 2 piar-0.11.0/piar/inst/doc/subperiods.Rmd | 5 piar-0.11.0/piar/inst/doc/subperiods.html | 34 piar-0.11.0/piar/inst/doc/superlative-aggregation.R | 2 piar-0.11.0/piar/inst/doc/superlative-aggregation.Rmd | 11 piar-0.11.0/piar/inst/doc/superlative-aggregation.html | 112 --- piar-0.11.0/piar/inst/tinytest/test-aggregate.R | 50 - piar-0.11.0/piar/inst/tinytest/test-aggregation-structure-attributes.R | 8 piar-0.11.0/piar/inst/tinytest/test-aggregation_structure.R | 8 piar-0.11.0/piar/inst/tinytest/test-as.ts.R | 2 piar-0.11.0/piar/inst/tinytest/test-as_index.R | 12 piar-0.11.0/piar/inst/tinytest/test-back_period.R | 6 piar-0.11.0/piar/inst/tinytest/test-chain.R | 22 piar-0.11.0/piar/inst/tinytest/test-coerce-aggregation-structure.R | 9 piar-0.11.0/piar/inst/tinytest/test-coerce-index.R | 6 piar-0.11.0/piar/inst/tinytest/test-combine_classifications.R | 6 piar-0.11.0/piar/inst/tinytest/test-contrib.R | 14 piar-0.11.0/piar/inst/tinytest/test-cut.R | 12 piar-0.11.0/piar/inst/tinytest/test-elemental_index.R | 10 piar-0.11.0/piar/inst/tinytest/test-expand_classification.R | 10 piar-0.11.0/piar/inst/tinytest/test-extract-index.R | 49 + piar-0.11.0/piar/inst/tinytest/test-geks_index.R | 12 piar-0.11.0/piar/inst/tinytest/test-gmean.R | 4 piar-0.11.0/piar/inst/tinytest/test-impute-prices.R | 18 piar-0.11.0/piar/inst/tinytest/test-index-attributes.R | 6 piar-0.11.0/piar/inst/tinytest/test-is.na.R | 4 piar-0.11.0/piar/inst/tinytest/test-known-values.R | 6 piar-0.11.0/piar/inst/tinytest/test-lag.R |only piar-0.11.0/piar/inst/tinytest/test-mean.R | 8 piar-0.11.0/piar/inst/tinytest/test-merge.R | 10 piar-0.11.0/piar/inst/tinytest/test-outliers.R | 8 piar-0.11.0/piar/inst/tinytest/test-splice_index.R | 18 piar-0.11.0/piar/inst/tinytest/test-split.R | 4 piar-0.11.0/piar/inst/tinytest/test-split_classification.R | 6 piar-0.11.0/piar/inst/tinytest/test-stack.R | 14 piar-0.11.0/piar/inst/tinytest/test-transmute_weights.R | 4 piar-0.11.0/piar/inst/tinytest/test-update.R | 6 piar-0.11.0/piar/inst/tinytest/test-window.R | 6 piar-0.11.0/piar/man/aggregate.piar_index.Rd | 36 - piar-0.11.0/piar/man/aggregation_structure.Rd | 2 piar-0.11.0/piar/man/as.data.frame.piar_index.Rd | 5 piar-0.11.0/piar/man/as.matrix.piar_aggregation_structure.Rd | 14 piar-0.11.0/piar/man/as.ts.piar_index.Rd | 7 piar-0.11.0/piar/man/back_period.Rd | 9 piar-0.11.0/piar/man/chain.Rd | 1 piar-0.11.0/piar/man/contrib.Rd | 1 piar-0.11.0/piar/man/elementary_index.Rd | 26 piar-0.11.0/piar/man/emean.Rd | 7 piar-0.11.0/piar/man/geks_index.Rd | 13 piar-0.11.0/piar/man/gmean.Rd | 18 piar-0.11.0/piar/man/head.piar_index.Rd | 5 piar-0.11.0/piar/man/impute_prices.Rd | 14 piar-0.11.0/piar/man/is.na.piar_index.Rd | 1 piar-0.11.0/piar/man/lag.piar_index.Rd |only piar-0.11.0/piar/man/levels.piar_index.Rd | 1 piar-0.11.0/piar/man/mean.piar_index.Rd | 10 piar-0.11.0/piar/man/merge.piar_index.Rd | 1 piar-0.11.0/piar/man/outliers.Rd | 28 piar-0.11.0/piar/man/piar-package.Rd | 4 piar-0.11.0/piar/man/price_relative.Rd | 2 piar-0.11.0/piar/man/splice_index.Rd | 8 piar-0.11.0/piar/man/split.piar_index.Rd | 3 piar-0.11.0/piar/man/split_classification.Rd | 4 piar-0.11.0/piar/man/stack.piar_index.Rd | 3 piar-0.11.0/piar/man/sub-.piar_index.Rd | 10 piar-0.11.0/piar/man/time.piar_index.Rd | 1 piar-0.11.0/piar/man/transmute_weights.Rd | 7 piar-0.11.0/piar/man/transmute_weights2.Rd | 17 piar-0.11.0/piar/man/update_weights.Rd | 11 piar-0.11.0/piar/man/window.piar_index.Rd | 2 piar-0.11.0/piar/vignettes/adjust-weights.Rmd | 5 piar-0.11.0/piar/vignettes/contributions.Rmd | 5 piar-0.11.0/piar/vignettes/decomposing-indexes.Rmd | 63 - piar-0.11.0/piar/vignettes/imputation.Rmd | 5 piar-0.11.0/piar/vignettes/index-number-formulas.Rmd | 15 piar-0.11.0/piar/vignettes/matrix-aggregation.Rmd | 5 piar-0.11.0/piar/vignettes/multiple-baskets.Rmd | 5 piar-0.11.0/piar/vignettes/multiple-data-sources.Rmd | 5 piar-0.11.0/piar/vignettes/multiple-dimensions.Rmd | 58 + piar-0.11.0/piar/vignettes/piar.Rmd | 16 piar-0.11.0/piar/vignettes/spatial-price-index.Rmd | 5 piar-0.11.0/piar/vignettes/subperiods.Rmd | 5 piar-0.11.0/piar/vignettes/superlative-aggregation.Rmd | 11 165 files changed, 1544 insertions(+), 2080 deletions(-)
Title: Read and Write 'Apache Iceberg' Tables
Description: A native client for 'Apache Iceberg', the open table format used by
'Snowflake', 'Databricks', 'BigQuery', 'AWS' and 'Dremio'. Rather than
reaching 'Iceberg' through a query engine such as 'DuckDB', this package
talks to it directly: it connects to REST and 'AWS Glue' catalogs, lists
namespaces and tables, reads the schema and partition specification of a
table, scans data with predicates and projections pushed down, travels back
through snapshot history, and appends new data. 'Apache Arrow' is the
interchange layer throughout, so scan results arrive in R without a
serialisation round trip. Built on 'iceberg-rust', the Apache-governed
'Rust' implementation, via 'extendr'.
Supports table spec versions 1 and 2; see the 'README' for the full matrix
of supported and unsupported features. This is a community package, not
affiliated with or endorsed by The Apache Software Foundation; 'Apache',
'Apache Iceberg' and 'Iceberg' are trademarks of The Apache Software
Foundation.
Author: Youzhi Yu [aut, cre],
The Apache Software Foundation [cph]
Maintainer: Youzhi Yu <yuyouzhi666@icloud.com>
Diff between icebergr versions 0.1.0 dated 2026-09-10 and 0.2.0 dated 2026-10-12
DESCRIPTION | 31 - LICENSE.note | 51 -- MD5 | 148 +++--- NEWS.md | 225 +++++++++ R/catalog.R | 226 ++++++++- R/extendr-wrappers.R | 4 R/filter.R | 172 ++++++ R/icebergr-package.R | 7 R/scan.R | 56 +- R/snapshots.R | 14 R/spec-support.R | 22 R/table.R | 22 R/utils.R | 70 ++ R/write.R | 174 ++++++- README.md | 347 ++------------ build/vignette.rds |binary inst/NOTICE | 4 inst/doc/catalog-configuration.R | 6 inst/doc/catalog-configuration.Rmd | 93 ++- inst/doc/catalog-configuration.html | 130 ++++- inst/doc/getting-started.R | 8 inst/doc/getting-started.Rmd | 48 + inst/doc/getting-started.html | 135 ++++- inst/doc/pushdown.R |only inst/doc/pushdown.Rmd |only inst/doc/pushdown.html |only inst/doc/table-format.R |only inst/doc/table-format.Rmd |only inst/doc/table-format.html |only inst/doc/time-travel.R |only inst/doc/time-travel.Rmd |only inst/doc/time-travel.html |only inst/doc/types.R |only inst/doc/types.Rmd |only inst/doc/types.html |only inst/doc/writing.R |only inst/doc/writing.Rmd |only inst/doc/writing.html |only man/figures |only man/icebergr-package.Rd | 8 man/icebergr_append.Rd | 13 man/icebergr_catalog.Rd | 44 + man/icebergr_create_table.Rd | 3 man/icebergr_properties.Rd | 2 man/icebergr_register_table.Rd | 28 + man/icebergr_scan.Rd | 32 - man/icebergr_table_exists.Rd | 6 src/Makevars.in | 6 src/rust/Cargo.lock | 813 ++++++++++++++++----------------- src/rust/Cargo.toml | 38 + src/rust/build.rs |only src/rust/src/arrow_bridge.rs | 12 src/rust/src/catalog.rs | 72 ++ src/rust/src/errors.rs | 258 ++++++++++ src/rust/src/lib.rs | 5 src/rust/src/panic.rs | 86 +++ src/rust/src/predicate.rs | 405 ++++++++++++---- src/rust/src/runtime.rs | 330 +++++++++++++ src/rust/src/scan.rs | 85 ++- src/rust/src/table.rs | 34 + src/rust/src/write.rs | 246 +++++++-- src/rust/vendor.tar.xz |binary tests/testthat/helper-icebergr.R | 47 + tests/testthat/test-case-sensitivity.R | 37 + tests/testthat/test-catalog.R | 19 tests/testthat/test-conditions.R | 26 + tests/testthat/test-confine.R |only tests/testthat/test-credentials.R |only tests/testthat/test-errors.R | 49 + tests/testthat/test-filter.R | 80 +++ tests/testthat/test-pushdown.R | 325 +++++++++++++ tests/testthat/test-roundtrip.R | 46 + tests/testthat/test-spec-support.R | 17 tests/testthat/test-time-travel.R | 72 ++ tests/testthat/test-types.R | 5 tools/config.R | 46 + tools/msrv.R | 61 ++ tools/vendor.R | 114 +++- vignettes/catalog-configuration.Rmd | 93 ++- vignettes/getting-started.Rmd | 48 + vignettes/pushdown.Rmd |only vignettes/table-format.Rmd |only vignettes/time-travel.Rmd |only vignettes/types.Rmd |only vignettes/vignette_reference.bib |only vignettes/writing.Rmd |only 86 files changed, 4274 insertions(+), 1330 deletions(-)
Title: Iterative Extrapolation of Species' Haplotype Accumulation
Curves for Genetic Diversity Assessment
Description: Performs iterative extrapolation of species' haplotype accumulation curves using a nonparametric stochastic (Monte Carlo) optimization method for assessment of specimen sampling completeness based on the approach of Phillips et al. (2015) <doi:10.1515/dna-2015-0008>, Phillips et al. (2019) <doi:10.1002/ece3.4757> and Phillips et al. (2020) <doi: 10.7717/peerj-cs.243>. 'HACSim' outputs a number of useful summary statistics of sampling coverage ("Measures of Sampling Closeness"), including an estimate of the likely required sample size (along with desired level confidence intervals) necessary to recover a given number/proportion of observed unique species' haplotypes. Any genomic marker can be targeted to assess likely required specimen sample sizes for genetic diversity assessment. The method is particularly well-suited to assess sampling sufficiency for DNA barcoding initiatives. Users can also simulate their own DNA sequences according to various models of nucleotide [...truncated...]
Author: Jarrett D. Phillips [aut, cre],
Steven H. French [ctb],
Navdeep Singh [ctb]
Maintainer: Jarrett D. Phillips <phillipsjarrett1@gmail.com>
Diff between HACSim versions 1.0.7-1 dated 2025-09-19 and 1.0.7-2 dated 2026-10-12
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Efficient Spatial Thinning of Species Occurrences
Description: Provides efficient geospatial thinning algorithms to reduce
the density of coordinate data while maintaining spatial
relationships. Implements K-D Tree and brute-force distance-based
thinning, as well as grid-based and precision-based thinning methods.
For more information on the methods, see Elseberg et al. (2012)
<https://hdl.handle.net/10446/86202>.
Author: Jorge Mestre-Tomas [aut, cre]
Maintainer: Jorge Mestre-Tomas <jorge.mestre.tomas@csic.es>
Diff between GeoThinneR versions 2.1.2 dated 2026-08-25 and 2.1.3 dated 2026-10-12
DESCRIPTION | 8 MD5 | 69 ++-- NAMESPACE | 63 +--- NEWS.md | 17 + R/GeoThinned_class.R | 9 R/distance_thinning.R | 78 ++++- R/grid_thinning.R | 2 R/precision_thinning.R | 2 R/thin_points.R | 1 R/thinning_algorithm.R | 15 - R/utils.R | 45 +-- build/vignette.rds |binary inst/CITATION | 28 - inst/doc/GeoThinneR.R | 23 + inst/doc/GeoThinneR.Rmd | 28 + inst/doc/GeoThinneR.html | 430 ++++++++++++++++-------------- man/GeoThinned.Rd | 203 ++++++-------- man/calculate_spatial_coverage.Rd | 69 ++-- man/caretta.Rd | 92 +++--- man/compute_nearest_neighbor_distances.Rd | 79 ++--- man/compute_neighbors_brute.Rd | 77 ++--- man/compute_neighbors_kdtree.Rd | 89 +++--- man/compute_neighbors_local_kdtree.Rd | 83 ++--- man/distance_thinning.Rd | 149 +++++----- man/estimate_k_max.Rd | 81 ++--- man/grid_thinning.Rd | 132 ++++----- man/is_lonlat.Rd | 61 ++-- man/lon_lat_to_cartesian.Rd | 53 +-- man/max_thinning_algorithm.Rd | 81 ++--- man/new_GeoThinned.Rd |only man/precision_thinning.Rd | 96 +++--- man/select_target_points.Rd | 88 +++--- man/thin_points.Rd | 255 ++++++++--------- man/thunnus.Rd | 72 ++--- tests/testthat/test-distance_thinning.R | 53 +++ vignettes/GeoThinneR.Rmd | 28 + 36 files changed, 1459 insertions(+), 1200 deletions(-)
Title: Local Large Language Model Inference Engine
Description: Enables R users to run large language models locally using 'GGUF' model files
and the 'llama.cpp' inference engine. Provides a complete R interface for loading models,
generating text completions, extracting vector representations, and streaming responses in real-time.
Includes grammar-constrained generation for structured output, text classification,
and retrieval-augmented generation (RAG) pipelines. Supports local inference without
requiring cloud APIs or internet connectivity, ensuring complete data privacy and
control. Based on the 'llama.cpp' project by Georgi Gerganov (2023) <https://github.com/ggml-org/llama.cpp>.
Author: Pawan Rama Mali [aut, cre, cph],
Georgi Gerganov [aut, cph] ,
The ggml authors [cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
pi6am [ctb] ,
Ivan Yurchenko [ctb] ,
Dirk Eddelbuettel [ctb, rev]
Maintainer: Pawan Rama Mali <prm@outlook.in>
Diff between edgemodelr versions 0.4.3 dated 2026-09-08 and 0.4.5 dated 2026-10-12
DESCRIPTION | 13 MD5 | 81 NEWS.md | 1003 ++- R/RcppExports.R | 8 R/api.R | 7316 ++++++++++++++-------------- R/edgemodelr-package.R | 42 R/ollama.R | 2 R/zzz.R | 2 inst/CITATION | 28 inst/examples/08_rag_pipeline.R | 650 +- man/edge_ask.Rd | 118 man/edge_chat_completion.Rd | 100 man/edge_classify.Rd | 102 man/edge_clean_cache.Rd | 90 man/edge_embeddings.Rd | 106 man/edge_extract.Rd | 102 man/edge_extract_batch.Rd | 102 man/edge_grammar_completion.Rd | 140 man/edge_index_documents.Rd | 112 man/edge_json_grammar.Rd | 70 man/edge_map.Rd | 102 man/edge_model_n_embd.Rd | 50 man/edge_search.Rd | 66 man/edge_serve.Rd | 108 man/edge_similarity.Rd | 58 man/edge_similarity_matrix.Rd | 56 src/Makevars | 14 src/Makevars.win | 8 src/RcppExports.cpp | 19 src/bindings.cpp | 152 src/ggml/ggml-common.h | 7 src/ggml/ggml.c | 10 tests/testthat.R | 8 tests/testthat/test-e2e-integration.R | 95 tests/testthat/test-error-handling.R | 27 tests/testthat/test-integration.R | 8 tests/testthat/test-malformed-model-files.R |only tests/testthat/test-model-loading.R | 13 tests/testthat/test-model-management.R | 16 tests/testthat/test-streaming.R | 22 tests/testthat/test-text-completion.R | 8 tests/testthat/test-utility-functions.R | 96 42 files changed, 5765 insertions(+), 5365 deletions(-)
Title: Data Science Infrastructure for Global Health
Description: Supports global health data analysis, including a
publication-ready 'ggplot2' theme, a 'flextable' defaults helper,
a thin pie chart wrapper, built-in regional country-code datasets
with a WHO region lookup helper, a geometric mean function for
indicator aggregation, an average annual rate of reduction function
for indicator progress tracking, direct age standardization against
the bundled WHO 2026 Standard Population, period life-table
construction, a snapshot helper for reproducible data pulls, and
convenience clients for the World Health Organization Global Health
Observatory (GHO) through its legacy OData API
<https://ghoapi.azureedge.net/api/> or the public WHO xMart OData API
<https://xmart-api-public.who.int/DATA_>, Global Health Estimates (GHE)
through WHO xMart, and
the United Nations Sustainable Development Goals (SDG) API
<https://unstats.un.org/SDGAPI/swagger/>.
Author: Shanlong Ding [aut, cre]
Maintainer: Shanlong Ding <dings@who.int>
Diff between DSIR versions 0.10.0 dated 2026-10-01 and 0.11.0 dated 2026-10-12
DESCRIPTION | 13 MD5 | 106 ++-- NAMESPACE | 85 +-- NEWS.md | 176 ++++--- R/DSIR-package.R | 69 +- R/age_standardize.R | 329 ++++++------- R/bind_indicators.R | 138 ++--- R/clean_metadata.R | 146 +++-- R/clean_schema.R | 126 ++--- R/data.R | 450 ++++++++---------- R/ghe.R |only R/gho.R | 507 +++++--------------- R/http.R | 45 + R/who_backend.R |only R/who_gho.R |only R/who_legacy.R |only README.md | 445 +++++++++++------ build/vignette.rds |binary data/who_std_pop.rda |binary inst/CITATION | 36 - inst/WORDLIST | 99 ++- inst/doc/DSIR.R | 350 ++++++-------- inst/doc/DSIR.Rmd | 273 +++++----- inst/doc/DSIR.html | 506 ++------------------ inst/doc/ghe-xmart.R |only inst/doc/ghe-xmart.Rmd |only inst/doc/ghe-xmart.html |only man/DSIR-package.Rd | 7 man/age_standardize.Rd | 209 ++++---- man/bind_indicators.Rd | 102 ++-- man/ghe_causes.Rd |only man/ghe_clean.Rd |only man/ghe_coverage.Rd |only man/ghe_data.Rd |only man/ghe_dimensions.Rd |only man/gho_clean.Rd | 185 +++---- man/gho_count.Rd | 148 +++-- man/gho_coverage.Rd | 170 +++--- man/gho_data.Rd | 171 ++++-- man/gho_dimensions.Rd | 98 ++- man/gho_has_data.Rd | 160 +++--- man/gho_indicators.Rd | 11 man/who_std_pop.Rd | 113 ++-- tests/testthat/helper-gho-cache.R | 27 - tests/testthat/helper-who-mock.R |only tests/testthat/test-age_standardize.R | 268 +++++----- tests/testthat/test-clean.R | 749 +++++++++++++++--------------- tests/testthat/test-ghe.R |only tests/testthat/test-gho-availability.R | 206 ++++---- tests/testthat/test-gho-backend.R |only tests/testthat/test-gho-catalog-cache.R | 150 +++--- tests/testthat/test-gho-dimensions.R | 219 ++++---- tests/testthat/test-gho-get-mock.R | 445 +++++++++-------- tests/testthat/test-gho.R | 4 tests/testthat/test-sdg-area-resolution.R | 145 ++--- tests/testthat/test-sdg-coverage.R | 258 +++++----- tests/testthat/test-sdg-indicators.R | 193 ++++--- tests/testthat/test-sdg-year-filter.R | 136 ++--- tests/testthat/test-who-html.R |only tests/testthat/test-who-xmart.R |only tests/testthat/test-who_std_pop.R | 75 +-- vignettes/DSIR.Rmd | 273 +++++----- vignettes/ghe-xmart.Rmd |only 63 files changed, 4087 insertions(+), 4334 deletions(-)
Title: Port of 'Dparser' Package
Description: A Scannerless GLR parser/parser generator. Note that GLR standing for "generalized LR", where L stands for "left-to-right" and
R stands for "rightmost (derivation)". For more information see <https://en.wikipedia.org/wiki/GLR_parser>. This parser is based on the Tomita
(1987) algorithm. (Paper can be found at <https://aclanthology.org/P84-1073.pdf>).
The original 'dparser' package documentation can be found at <https://dparser.sourceforge.net/>. This allows you to add mini-languages to R (like
rxode2's ODE mini-language Wang, Hallow, and James 2015 <DOI:10.1002/psp4.12052>) or to parse other languages like 'NONMEM' to automatically translate
them to R code. To use this in your code, add a LinkingTo dparser in your DESCRIPTION file and instead of using #include <dparse.h> use
#include <dparser.h>. This also provides a R-based port of the make_dparser <https://dparser.sourceforge.net/d/make_dparser.cat> command called
mkdparser(). Addition [...truncated...]
Author: Matthew Fidler [aut, cre],
John Plevyak [aut, cph]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between dparser versions 1.3.1-13 dated 2024-10-22 and 1.3.1-14 dated 2026-10-12
DESCRIPTION | 8 - MD5 | 40 +++++--- NAMESPACE | 6 - NEWS.md | 108 ++++++++++++++++++++++++ inst/ansic.test.g.d_parser.c |only man/dparser-package.Rd | 12 +- man/mkdparse.Rd | 12 +- src/dparse.h | 1 src/dparser.c | 2 src/dparser.h | 6 + src/dparser2.h | 1 src/dparserPtr.h | 3 src/lex.c | 9 +- src/parse.c | 57 ++++++++---- src/rdparse.c | 7 + src/util.c | 28 ++++-- src/write_tables.c | 45 ++++++---- tests/testthat/concurrent_parser.c |only tests/testthat/helper-concurrent.R |only tests/testthat/test-concurrent-dparse.R |only tests/testthat/test-mem-buf-read-large.R |only tests/testthat/test-mem-d-pass-negative.R |only tests/testthat/test-mem-dparse-unsigned.R |only tests/testthat/test-mem-new-D-Parser-negative.R |only tests/testthat/test-mem-rdparse-bad-file.R |only tests/testthat/test-mem-udparse-null.R |only 26 files changed, 268 insertions(+), 77 deletions(-)
Title: 'AV1' Video Encoding for Biological Microscopy Data
Description: Converts microscopy video and image data (H.264/H.265,
AVI/MJPEG, TIFF stacks) to the 'AV1' codec for compact storage, and
archives 16-bit image stacks and videos losslessly in the 'FFV1'
format. Encoding runs on the GPU via 'Vulkan' or 'VAAPI' when
available and falls back to the CPU through 'FFmpeg' and 'SVT-AV1'.
Whole experiment folders can be converted at once.
Author: Yuri Baramykov [aut, cre] ,
The Khronos Group Inc. [cph],
FFmpeg developers [cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
This is a re-admission after prior archival of version 0.1.3 dated 2026-03-23
Diff between AV1R versions 0.1.3 dated 2026-03-23 and 0.1.4 dated 2026-10-12
DESCRIPTION | 53 ++++------ MD5 | 98 ++++++++++++------ NAMESPACE | 2 NEWS.md | 11 ++ R/archive.R |only R/archive_video.R |only R/backend.R | 16 ++- R/convert.R | 57 ++++++---- R/quality.R | 17 ++- R/utils.R | 9 + README.md | 174 ++++++++++++++++++++++++++++++++- cleanup | 13 ++ cleanup.win |only configure | 29 +++++ configure.win | 26 ++++ inst/examples/benchmark_ffv1.R |only inst/examples/calibrate_vaapi_cqp.R | 17 --- inst/examples/profile_ffv1_shader.R |only man/AV1R-package.Rd | 10 + man/archive_tiff.Rd |only man/archive_video.Rd |only man/av1r_status.Rd | 3 man/detect_backend.Rd | 4 man/vulkan_available.Rd | 6 - man/vulkan_devices.Rd | 3 src/Makevars.in | 8 + src/Makevars.win.in | 8 + src/av1r_bindings.cpp | 62 +++++++++-- src/av1r_encode_vulkan.cpp | 14 +- src/av1r_ffv1_bindings.cpp |only src/av1r_ffv1_encoder.cpp |only src/av1r_ffv1_encoder.h |only src/av1r_ffv1_gpu.cpp |only src/av1r_ffv1_gpu.h |only src/av1r_ffv1_gpu_encoder.cpp |only src/av1r_ffv1_gpu_encoder.h |only src/av1r_ffv1_rangecoder.cpp |only src/av1r_ffv1_rangecoder.h |only src/av1r_ffv1_tables.h |only src/av1r_init.cpp | 11 +- src/av1r_memory.cpp | 7 + src/av1r_mkv_writer.cpp |only src/av1r_mkv_writer.h |only src/av1r_stderr_suppress.h | 7 + src/av1r_stream_encoder.h | 3 src/av1r_vk_instance.h |only src/av1r_vulkan_ctx.h | 5 src/ffv1_shaders |only tests/testthat/helper-device.R |only tests/testthat/test-archive-internal.R |only tests/testthat/test-archive-video.R |only tests/testthat/test-archive.R |only tests/testthat/test-backend.R | 8 - tests/testthat/test-batch-internal.R |only tests/testthat/test-compute-size.R | 4 tests/testthat/test-convert.R | 2 tests/testthat/test-ffmpeg.R | 21 +++ tests/testthat/test-ffv1.R |only tests/testthat/test-mkv.R |only tests/testthat/test-quality-internal.R | 2 tests/testthat/test-tiff.R | 42 ++++--- tests/testthat/test-utils.R | 8 + tools |only 63 files changed, 586 insertions(+), 174 deletions(-)
Title: Arc-Length Statistics: Goodness of Fit, Distributions and a
Bayesian Test
Description: Inference from the arc length of statistical functions. Three tools share one pure-C
back-end: a goodness-of-fit test based on the arc length of the probability plot, with an analytic
saddlepoint null and sensitivity to local density structure that the empirical-distribution tests
miss; two constructions that build a distribution from the arc length of its defining curve, the
arc-length generator and the quantile arc-length family estimated by L-moments; and a Bayesian
nonparametric arc-length goodness-of-fit test on the Dirichlet-process posterior. The same C sources
back the 'Python' package 'arcstat'.
Author: M. Theodor Loots [aut, cre]
Maintainer: M. Theodor Loots <theo.loots@gmail.com>
Diff between arcstat versions 0.3.0 dated 2026-09-14 and 0.3.1 dated 2026-10-12
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 11 +++++++++++ README.md | 12 ++++++++++++ src/arclen.c | 6 ++++++ tests/testthat/test-arclen.R | 13 +++++++++++++ 6 files changed, 50 insertions(+), 8 deletions(-)