Title: Synthesize Bio API Wrapper
Description: Access Synthesize Bio models from their API <https://app.synthesize.bio/> using
this wrapper that provides a convenient interface to the Synthesize Bio API, allowing users
to generate realistic gene expression data based on specified biological conditions. This package
enables researchers to easily access AI-generated transcriptomic data for various
modalities including bulk RNA-seq, single-cell RNA-seq, microarray data, and more.
Author: Synthesize Bio [aut],
Alex David [aut, cre]
Maintainer: Alex David <alex@synthesize.bio>
Diff between rsynthbio versions 4.2.1 dated 2026-10-13 and 4.2.2 dated 2026-10-14
DESCRIPTION | 20 ++++++++++++-------- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ build/vignette.rds |binary inst/doc/baseline.html | 3 +-- inst/doc/getting-started.html | 3 +-- inst/doc/metadata-prediction.html | 3 +-- inst/doc/reference-conditioning.html | 3 +-- inst/doc/self-hosted.html | 3 +-- 9 files changed, 30 insertions(+), 26 deletions(-)
Title: Person Parameter Estimation
Description: Estimation of person parameters (abilities) for the 1, 2, 3
and 4 parameter logistic model, the (generalized) partial credit model
and tests that mix dichotomous and polytomous items, under the
assumption that the item parameters are known and fixed: maximum
likelihood, weighted likelihood (Warm, 1989 <doi:10.1007/BF02294627>),
maximum and expected a posteriori and robust estimation (Schuster and
Yuan, 2011 <doi:10.3102/1076998610396890>). Further features are
jackknife estimates (Wainer and Wright, 1980 <doi:10.1007/BF02293910>),
plausible values, the person fit statistics lz, lz* (Snijders, 2001
<doi:10.1007/BF02294437>), infit and outfit, and the simulation of
response data. Models fitted with the 'eRm' package can be passed on
directly. The package is useful, e.g., when items of an item bank are
given to a new sample of persons.
Author: Manuel Reif [cre, aut],
Jan Steinfeld [aut]
Maintainer: Manuel Reif <manuel.reif@gmail.com>
Diff between PP versions 0.6.4-1 dated 2026-04-21 and 1.0.0 dated 2026-10-14
PP-0.6.4-1/PP/R/Infit.R |only PP-0.6.4-1/PP/R/Infitpoly.R |only PP-0.6.4-1/PP/R/JKpp.R |only PP-0.6.4-1/PP/R/Outfit.R |only PP-0.6.4-1/PP/R/Outfitpoly.R |only PP-0.6.4-1/PP/R/PP.R |only PP-0.6.4-1/PP/R/PP_4pl.R |only PP-0.6.4-1/PP/R/PP_gpcm.R |only PP-0.6.4-1/PP/R/PPall.R |only PP-0.6.4-1/PP/R/PPass.R |only PP-0.6.4-1/PP/R/PV.R |only PP-0.6.4-1/PP/R/Pfit.R |only PP-0.6.4-1/PP/R/checkINP.R |only PP-0.6.4-1/PP/R/eap.R |only PP-0.6.4-1/PP/R/findmodel.R |only PP-0.6.4-1/PP/R/jackknife.R |only PP-0.6.4-1/PP/R/lz.R |only PP-0.6.4-1/PP/R/lzstar.R |only PP-0.6.4-1/PP/R/lzstar_mixed.R |only PP-0.6.4-1/PP/R/make_dup.R |only PP-0.6.4-1/PP/R/pkg_start.R |only PP-0.6.4-1/PP/R/prints.R |only PP-0.6.4-1/PP/R/quadIT.R |only PP-0.6.4-1/PP/R/sim_gpcm.R |only PP-0.6.4-1/PP/R/stdrdize_hist.R |only PP-0.6.4-1/PP/inst/doc/ppass_par_and_fit.R |only PP-0.6.4-1/PP/inst/doc/ppass_par_and_fit.Rmd |only PP-0.6.4-1/PP/inst/doc/ppass_par_and_fit.html |only PP-0.6.4-1/PP/man/Pfit_lzstarmix.Rd |only PP-0.6.4-1/PP/man/lzstar_mixed.Rd |only PP-0.6.4-1/PP/man/print_personfit_summary.Rd |only PP-0.6.4-1/PP/src/GPCM4PL_stuff.cpp |only PP-0.6.4-1/PP/src/helper_func.cpp |only PP-0.6.4-1/PP/vignettes/literatur.bib |only PP-0.6.4-1/PP/vignettes/ppass_par_and_fit.Rmd |only PP-1.0.0/PP/DESCRIPTION | 72 - PP-1.0.0/PP/MD5 | 141 +-- PP-1.0.0/PP/NAMESPACE | 86 +- PP-1.0.0/PP/NEWS.md |only PP-1.0.0/PP/R/PP-package.R |only PP-1.0.0/PP/R/RcppExports.R | 149 +-- PP-1.0.0/PP/R/dataRd.R | 96 +- PP-1.0.0/PP/R/estimate.R |only PP-1.0.0/PP/R/jk.R |only PP-1.0.0/PP/R/methods.R |only PP-1.0.0/PP/R/pfit.R |only PP-1.0.0/PP/R/plot.R |only PP-1.0.0/PP/R/ppass.R |only PP-1.0.0/PP/R/prepare.R |only PP-1.0.0/PP/R/pv.R |only PP-1.0.0/PP/R/sim.R |only PP-1.0.0/PP/build/vignette.rds |binary PP-1.0.0/PP/inst/CITATION | 39 PP-1.0.0/PP/inst/doc/intro_pfit.R | 218 +---- PP-1.0.0/PP/inst/doc/intro_pfit.Rmd | 349 ++------ PP-1.0.0/PP/inst/doc/intro_pfit.html | 901 +++++++++++---------- PP-1.0.0/PP/inst/doc/intro_pp.R | 134 +-- PP-1.0.0/PP/inst/doc/intro_pp.Rmd | 338 +++---- PP-1.0.0/PP/inst/doc/intro_pp.html | 1015 +++++++++++++----------- PP-1.0.0/PP/inst/doc/ppass_erm.R |only PP-1.0.0/PP/inst/doc/ppass_erm.Rmd |only PP-1.0.0/PP/inst/doc/ppass_erm.html |only PP-1.0.0/PP/man/Jkpp.Rd | 332 ++----- PP-1.0.0/PP/man/PP-package.Rd | 129 +-- PP-1.0.0/PP/man/PP_4pl.Rd | 400 +++------ PP-1.0.0/PP/man/PP_gpcm.Rd | 278 +++--- PP-1.0.0/PP/man/PPall.Rd | 302 +++---- PP-1.0.0/PP/man/PPass.Rd | 260 +++--- PP-1.0.0/PP/man/PV.Rd | 300 ++----- PP-1.0.0/PP/man/findmodel.Rd | 117 -- PP-1.0.0/PP/man/fourpl_df.Rd | 40 PP-1.0.0/PP/man/pfit.Rd | 330 +++---- PP-1.0.0/PP/man/pp-plots.Rd |only PP-1.0.0/PP/man/pp_amt.Rd | 86 +- PP-1.0.0/PP/man/ppeo-methods.Rd |only PP-1.0.0/PP/man/sim_4pl.Rd | 126 +- PP-1.0.0/PP/man/sim_gpcm.Rd | 96 -- PP-1.0.0/PP/man/sim_mixed.Rd |only PP-1.0.0/PP/src/RcppExports.cpp | 383 ++------- PP-1.0.0/PP/src/core.cpp |only PP-1.0.0/PP/src/fit_sim.cpp |only PP-1.0.0/PP/src/items.h |only PP-1.0.0/PP/tests/testthat.R | 6 PP-1.0.0/PP/tests/testthat/helper-1-expect.R |only PP-1.0.0/PP/tests/testthat/helper-2-reference.R |only PP-1.0.0/PP/tests/testthat/helper-3-data.R |only PP-1.0.0/PP/tests/testthat/test-core.R |only PP-1.0.0/PP/tests/testthat/test-eap.R |only PP-1.0.0/PP/tests/testthat/test-erm.R |only PP-1.0.0/PP/tests/testthat/test-estimate.R |only PP-1.0.0/PP/tests/testthat/test-input.R |only PP-1.0.0/PP/tests/testthat/test-jackknife.R |only PP-1.0.0/PP/tests/testthat/test-kernel.R |only PP-1.0.0/PP/tests/testthat/test-object.R |only PP-1.0.0/PP/tests/testthat/test-pfit.R |only PP-1.0.0/PP/tests/testthat/test-plot.R |only PP-1.0.0/PP/tests/testthat/test-posterior.R |only PP-1.0.0/PP/tests/testthat/test-ppass.R |only PP-1.0.0/PP/tests/testthat/test-prepare.R |only PP-1.0.0/PP/tests/testthat/test-pv.R |only PP-1.0.0/PP/tests/testthat/test-reference.R |only PP-1.0.0/PP/tests/testthat/test-sim.R |only PP-1.0.0/PP/tests/testthat/tests4pl.R | 192 +--- PP-1.0.0/PP/tests/testthat/testsgpcm.R | 57 - PP-1.0.0/PP/tests/testthat/testsgpcm4pl.R | 104 +- PP-1.0.0/PP/tests/testthat/testsjk.R | 102 +- PP-1.0.0/PP/vignettes/intro_pfit.Rmd | 349 ++------ PP-1.0.0/PP/vignettes/intro_pp.Rmd | 338 +++---- PP-1.0.0/PP/vignettes/ppass_erm.Rmd |only 109 files changed, 3438 insertions(+), 4427 deletions(-)
Title: Linear Model Functions
Description: Functions to access and test results from a linear model.
Author: Jared Studyvin [aut, cre]
Maintainer: Jared Studyvin <studyvinstat@gmail.com>
Diff between linearModel versions 1.0.2 dated 2022-01-04 and 1.1.1 dated 2026-10-14
linearModel-1.0.2/linearModel/R/contrastTest.R |only linearModel-1.0.2/linearModel/man/contrastTest.Rd |only linearModel-1.1.1/linearModel/DESCRIPTION | 12 ++++++------ linearModel-1.1.1/linearModel/LICENSE | 4 ++-- linearModel-1.1.1/linearModel/MD5 | 19 ++++++++++++------- linearModel-1.1.1/linearModel/NAMESPACE | 6 +++++- linearModel-1.1.1/linearModel/R/anovaTable.R | 5 +++-- linearModel-1.1.1/linearModel/R/cellMeans.R |only linearModel-1.1.1/linearModel/R/contrast.R |only linearModel-1.1.1/linearModel/R/testContrast.R |only linearModel-1.1.1/linearModel/man/anovaTable.Rd | 2 +- linearModel-1.1.1/linearModel/man/cellMeans.Rd |only linearModel-1.1.1/linearModel/man/contrast.Rd |only linearModel-1.1.1/linearModel/man/print.cellMeans.Rd |only linearModel-1.1.1/linearModel/man/testContrast.Rd |only 15 files changed, 29 insertions(+), 19 deletions(-)
Title: Tracking Communities in Changing Temporal Networks
Description: Tools for temporal networks that change over time, where nodes enter and leave, groups form, split, merge and dissolve, and periods differ in size. The temporal fitters track nodes and communities across periods. A community keeps one identifier while it persists, and a newly formed group receives a new one. Two-stage fitters run Louvain or Leiden community detection in each period and link communities in linked periods by Jaccard similarity, the overlap coefficient or node-strength weighted variants. The 'layer_links' argument sets which periods are directly linked, adjacent periods only by default. By default all periods are fitted jointly, so later periods can change earlier labels, and tracking = 'filtered' prevents this. Multislice modularity (Mucha et al. 2010) <doi:10.1126/science.1184819> and Hungarian matching are included as comparison methods, and a bootstrap stability score helps choose between the two-stage and multislice approaches.
Author: Jared Edgerton [aut, cre]
Maintainer: Jared Edgerton <jared.edgerton@gmail.com>
Diff between dynamicmultiplex versions 1.3.1 dated 2026-09-24 and 1.4.0 dated 2026-10-14
dynamicmultiplex-1.3.1/dynamicmultiplex/R/co_assignment_ci.R |only dynamicmultiplex-1.3.1/dynamicmultiplex/inst |only dynamicmultiplex-1.3.1/dynamicmultiplex/man/co_assignment_ci.Rd |only dynamicmultiplex-1.3.1/dynamicmultiplex/man/community_est.Rd |only dynamicmultiplex-1.4.0/dynamicmultiplex/DESCRIPTION | 12 dynamicmultiplex-1.4.0/dynamicmultiplex/MD5 | 79 - dynamicmultiplex-1.4.0/dynamicmultiplex/NAMESPACE | 5 dynamicmultiplex-1.4.0/dynamicmultiplex/NEWS.md | 153 ++ dynamicmultiplex-1.4.0/dynamicmultiplex/R/bootstrap_multilayer.R | 203 +-- dynamicmultiplex-1.4.0/dynamicmultiplex/R/fit_multilayer_hungarian.R | 75 + dynamicmultiplex-1.4.0/dynamicmultiplex/R/fit_multilayer_identity_ties.R | 43 dynamicmultiplex-1.4.0/dynamicmultiplex/R/fit_multilayer_jaccard.R | 70 - dynamicmultiplex-1.4.0/dynamicmultiplex/R/fit_multilayer_overlap.R | 70 - dynamicmultiplex-1.4.0/dynamicmultiplex/R/fit_multilayer_weighted_jaccard.R | 70 - dynamicmultiplex-1.4.0/dynamicmultiplex/R/fit_multilayer_weighted_overlap.R | 70 - dynamicmultiplex-1.4.0/dynamicmultiplex/R/layers_from_membership.R |only dynamicmultiplex-1.4.0/dynamicmultiplex/R/multilayer_utils.R | 542 +++++++++- dynamicmultiplex-1.4.0/dynamicmultiplex/R/partition_stability.R | 134 -- dynamicmultiplex-1.4.0/dynamicmultiplex/R/plot_multilayer_visualizations.R | 66 - dynamicmultiplex-1.4.0/dynamicmultiplex/R/simulate_and_fit_multilayer.R | 7 dynamicmultiplex-1.4.0/dynamicmultiplex/README.md | 42 dynamicmultiplex-1.4.0/dynamicmultiplex/man/animate_multilayer_gif.Rd | 5 dynamicmultiplex-1.4.0/dynamicmultiplex/man/bootstrap_multilayer.Rd | 37 dynamicmultiplex-1.4.0/dynamicmultiplex/man/fit_multilayer_hungarian.Rd | 24 dynamicmultiplex-1.4.0/dynamicmultiplex/man/fit_multilayer_identity_ties.Rd | 40 dynamicmultiplex-1.4.0/dynamicmultiplex/man/fit_multilayer_jaccard.Rd | 36 dynamicmultiplex-1.4.0/dynamicmultiplex/man/fit_multilayer_overlap.Rd | 36 dynamicmultiplex-1.4.0/dynamicmultiplex/man/fit_multilayer_weighted_jaccard.Rd | 36 dynamicmultiplex-1.4.0/dynamicmultiplex/man/fit_multilayer_weighted_overlap.Rd | 36 dynamicmultiplex-1.4.0/dynamicmultiplex/man/layers_from_membership.Rd |only dynamicmultiplex-1.4.0/dynamicmultiplex/man/partition_stability.Rd | 77 - dynamicmultiplex-1.4.0/dynamicmultiplex/man/plot_multilayer_alluvial.Rd | 5 dynamicmultiplex-1.4.0/dynamicmultiplex/man/plot_multilayer_series.Rd | 5 dynamicmultiplex-1.4.0/dynamicmultiplex/man/simulate_and_fit_multilayer.Rd | 7 dynamicmultiplex-1.4.0/dynamicmultiplex/tests/testthat/fixtures |only dynamicmultiplex-1.4.0/dynamicmultiplex/tests/testthat/helper-140.R |only dynamicmultiplex-1.4.0/dynamicmultiplex/tests/testthat/test-140-bootstrap-s.R |only dynamicmultiplex-1.4.0/dynamicmultiplex/tests/testthat/test-140-nodes.R |only dynamicmultiplex-1.4.0/dynamicmultiplex/tests/testthat/test-140-tracking.R |only dynamicmultiplex-1.4.0/dynamicmultiplex/tests/testthat/test-140-twomode.R |only dynamicmultiplex-1.4.0/dynamicmultiplex/tests/testthat/test-bootstrap.R | 107 - dynamicmultiplex-1.4.0/dynamicmultiplex/tests/testthat/test-input-policy-and-alignment.R |only dynamicmultiplex-1.4.0/dynamicmultiplex/tests/testthat/test-multislice-directed.R |only dynamicmultiplex-1.4.0/dynamicmultiplex/tests/testthat/test-multislice-restart.R |only 44 files changed, 1387 insertions(+), 705 deletions(-)
More information about dynamicmultiplex at CRAN
Permanent link
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word', 'RTF' and 'Microsoft
PowerPoint' documents from R. The package focuses on tabular and
graphical reporting from R; it also provides two functions that let
users get document content into data objects. A set of functions lets
add and remove images, tables and paragraphs of text in new or
existing documents. The package does not require any installation of
Microsoft products to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Stefan Moog [aut],
Mark Heckmann [aut] ,
ArData [cph],
Frank Hangler [ctb] ,
Liz Sander [ctb] ,
Anton Victorson [ctb] ,
Jon Calder [ctb] ,
John Harrold [ctb] ,
John Muschelli [ctb] ,
Bill Denney [ctb] ,
Nikolai Beck [ctb] ,
Gr [...truncated...]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.7.6 dated 2026-07-16 and 0.7.7 dated 2026-10-14
DESCRIPTION | 10 - MD5 | 52 +++++----- NAMESPACE | 154 ++++++++++++++++-------------- NEWS.md | 31 ++++++ R/docx_add.R | 24 ++++ R/docx_section.R | 102 +++++++++++-------- R/docx_settings.R | 6 - R/docx_write.R | 26 +++-- R/fortify_docx.R | 9 + R/post-proc.R | 40 +++++++ man/body_add_gg.Rd | 4 man/body_add_img.Rd | 13 ++ man/body_end_block_section.Rd | 17 +++ man/body_end_section_columns.Rd | 17 +++ man/body_end_section_columns_landscape.Rd | 17 +++ man/body_end_section_continuous.Rd | 17 +++ man/body_end_section_landscape.Rd | 17 +++ man/body_end_section_portrait.Rd | 17 +++ man/docx_summary.Rd | 3 man/print.rdocx.Rd | 8 - tests/testthat/test-block_list.R | 154 ++++++++++++++++++++++++++++++ tests/testthat/test-doc-summary.R | 19 +++ tests/testthat/test-docx_settings.R | 15 ++ tests/testthat/test-images.R | 84 ++++++++++++++++ tests/testthat/test-pptx-add.R | 18 ++- tests/testthat/test-pptx-info.R | 7 + tests/testthat/test-sections.R | 91 +++++++++++++++++ 27 files changed, 803 insertions(+), 169 deletions(-)
Title: Spatial Data Operations for Database-Backed Geometries
Description: Provides database-backed spatial geometry classes and methods for
working with vector spatial data in 'DuckDB'. The package supports loading,
converting, querying, joining, and measuring spatial geometries through
familiar 'sf'-style interfaces while keeping geometry columns lazy inside
the database. It integrates with 'dbProject' to preserve database paths,
live connections, and spatial table metadata across interactive sessions.
The package follows the Simple Features framework described by Pebesma
(2018) <doi:10.32614/RJ-2018-009> and uses DuckDB's spatial extension
<https://duckdb.org/docs/stable/core_extensions/spatial/overview.html>.
Author: Edward C. Ruiz [aut, cre] ,
Jiaji George Chen [aut],
Ruben Dries [aut, rev]
Maintainer: Edward C. Ruiz <ecr7407@gmail.com>
Diff between dbSpatial versions 0.1.2 dated 2026-06-23 and 0.1.3 dated 2026-10-14
DESCRIPTION | 6 GPL-3 | 1348 ++++++++++++++++---------------- LICENSE | 4 MD5 | 170 ++-- NAMESPACE | 136 +-- NEWS.md | 677 ++++++++-------- R/accessors.R | 58 - R/as_dbSpatial.R | 194 ++-- R/classes.R | 18 R/coerce.R | 82 - R/constructors.R | 34 R/dbSpatial.R | 476 +++++------ R/extract.R | 112 +- R/generics.R | 937 +++++++++++----------- R/geometry_ops.R | 140 +-- R/global.R | 24 R/imports.R | 66 - R/input_validation.R | 112 +- R/loadSpatial.R | 12 R/measurements.R | 46 - R/show.R | 110 +- R/sim_dbSpatial.R | 120 +- R/sql_gen.R | 146 +-- R/st_as_sf.R | 114 +- R/st_bbox.R | 100 +- R/st_geometry_type.R | 24 R/st_geometrytype.R | 92 +- R/st_is_valid.R | 24 R/st_join.R | 188 ++-- R/st_read.R | 166 +-- R/st_spatial_join.R | 186 ++-- R/st_translate.R | 50 - R/st_xmax.R | 46 - R/st_ymax.R | 46 - R/utils.R | 74 - R/vect.R | 86 +- README.md | 150 +-- inst/doc/class_structure.R | 40 inst/doc/class_structure.Rmd | 106 +- inst/doc/class_structure.html | 47 - inst/doc/getting_started.R | 86 +- inst/doc/getting_started.Rmd | 152 +-- inst/doc/getting_started.html | 74 + inst/doc/spatial_operations.R | 64 - inst/doc/spatial_operations.Rmd | 152 +-- inst/doc/spatial_operations.html | 112 ++ man/as_dbSpatial.Rd | 128 +-- man/cash-dbSpatial-method.Rd | 38 man/dbSpatial.Rd | 186 ++-- man/dbSpatial_options.Rd | 62 - man/dot-sim_dbSpatial.Rd | 48 - man/dot-st_read.Rd | 98 +- man/dot-st_spatial_join.Rd | 102 +- man/head.Rd | 52 - man/loadSpatial.Rd | 70 - man/show.Rd | 44 - man/st_area.Rd | 90 +- man/st_as_geojson.Rd | 90 +- man/st_as_sf.dbSpatial.Rd | 80 - man/st_as_text.Rd | 72 - man/st_bbox.Rd | 52 - man/st_buffer.Rd | 94 +- man/st_centroid.Rd | 91 +- man/st_geometrytype.Rd | 60 - man/st_join.dbSpatial.Rd | 116 +- man/st_length.Rd | 86 +- man/st_npoints.Rd | 98 +- man/st_perimeter.Rd | 90 +- man/st_simplify.Rd | 95 +- man/st_translate.Rd | 120 +- man/st_x.Rd | 92 +- man/st_xmax.Rd | 122 +- man/st_y.Rd | 92 +- man/st_ymax.Rd | 120 +- man/tail.Rd | 52 - man/vect-dbSpatial-method.Rd | 90 +- tests/testthat.R | 8 tests/testthat/test-extract.R | 32 tests/testthat/test-spatial-functions.R | 304 +++---- vignettes/class_structure.Rmd | 106 +- vignettes/class_structure.md | 30 vignettes/getting_started.Rmd | 152 +-- vignettes/getting_started.md | 236 ++--- vignettes/spatial_operations.Rmd | 152 +-- vignettes/spatial_operations.md | 412 ++++----- vignettes/test_data.csv | 22 86 files changed, 5760 insertions(+), 5531 deletions(-)
Title: Various Methods for the Goodness-of-Fit Problem in D>1
Dimensions
Description: Provides multivariate goodness-of-fit testing with a common
interface for several test statistics. Null models may be simple or include
parameter estimation, with p-values obtained by parametric bootstrap
simulation. The function gof_test_adjusted_pvalue() combines several tests
and computes a p-value adjusted for simultaneous inference. The function
gof_power() estimates test power. The functions hybrid_test() and
hybrid_power() use Monte Carlo samples under the null together with
two-sample procedures. The function run.studies() supports systematic power
comparisons of user-supplied and included methods across case studies. See
the included vignettes for method details and references.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between MDgof versions 1.2.0 dated 2026-09-18 and 1.2.1 dated 2026-10-14
DESCRIPTION | 6 MD5 | 8 NEWS.md | 3 R/gof_test_adjusted_pvalue.R | 605 +++++++++++++++++++-------------------- inst/doc/MDgof-Case-Studies.html | 54 +-- 5 files changed, 341 insertions(+), 335 deletions(-)
Title: Various Methods for the Two Sample Problem in D>1 Dimensions
Description: The routine twosample_test() in this package runs the
two-sample test using various test statistic for multivariate data.
The user can also run several tests and then find a p value adjusted for simultaneous inference.
The p values are found via permutation or via the parametric bootstrap.
The routine twosample_power() allows the estimation of the power of the tests.
The routine run.studies() allows a user to quickly study the power of a new method and
how it compares to those included in the package.
For details of the methods and references see the included vignettes.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between MD2sample versions 1.4.0 dated 2026-09-15 and 1.4.1 dated 2026-10-14
DESCRIPTION | 6 - MD5 | 14 +- NEWS.md | 3 R/power_pvals.R | 229 ++++++++++++++++++++++++---------------------- R/twosample_power.R | 15 ++- inst/doc/CaseStudies.html | 68 ++++++------- inst/doc/MD2sample.html | 6 - src/TS_cont.cpp | 2 8 files changed, 181 insertions(+), 162 deletions(-)
Title: Content Analysis in R: Integrated Qualitative (LLMs) and
Quantitative Pipeline
Description: Provides an integrated pipeline for content analysis
combining qualitative coding assisted by large language models (LLMs)
with classical quantitative text analysis. Includes modules for
pre-processing (tokenization, stopwords for Brazilian Portuguese),
descriptive statistics, keyness, co-occurrence networks, word clouds
(including comparative and X-ray variants), sentiment analysis via
OpLexicon, Latent Dirichlet Allocation (LDA), inter-coder
reliability metrics (Krippendorff, Gwet), and modern visualizations
based on ggplot2. Special focus on Brazilian corpora and
political-institutional codebooks. Inspired by Maerz and Benoit (2025)
<https://quallmer.github.io/quallmer/>.
Author: Anderson Henrique [aut, cre]
Maintainer: Anderson Henrique <anderson.henrique@usp.br>
Diff between acR versions 0.3.4 dated 2026-09-09 and 0.4.0 dated 2026-10-14
DESCRIPTION | 12 LICENSE | 4 MD5 | 375 +- NAMESPACE | 145 - NEWS.md | 855 +++-- R/acR-package.R | 74 R/ac_chat_local.R |only R/ac_clean.R | 846 ++--- R/ac_cluster.R | 484 +-- R/ac_cooccurrence.R | 422 +- R/ac_corpus.R | 738 ++--- R/ac_count.R | 334 +- R/ac_ellmer_chat.R | 126 R/ac_estimate_tokens.R |only R/ac_export.R | 474 +-- R/ac_fetch_camara.R | 994 +++--- R/ac_fetch_senado.R | 1042 +++---- R/ac_import.R | 430 +- R/ac_keyness.R | 480 +-- R/ac_lda.R | 846 ++--- R/ac_plot_cluster.R | 428 +- R/ac_plot_cooccurrence.R | 246 - R/ac_plot_keyness.R | 308 +- R/ac_plot_tf_idf.R | 350 +- R/ac_plot_top_terms.R | 328 +- R/ac_plot_wordcloud_comparative.R | 748 ++--- R/ac_qual_code.R | 1382 +++++---- R/ac_qual_codebook.R | 2494 ++++++++--------- R/ac_qual_irr.R | 686 ++-- R/ac_qual_live.R | 353 +- R/ac_qual_models.R | 1156 +++---- R/ac_qual_reliability.R | 1387 +++++---- R/ac_qual_report.R | 1558 +++++----- R/ac_qual_search_literature.R | 932 +++--- R/ac_sentiment.R | 620 ++-- R/ac_tf_idf.R | 290 +- R/ac_theme.R | 208 - 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vignettes/analise-proposicoes.Rmd | 888 +++--- vignettes/cluster.Rmd | 740 ++--- vignettes/introducao-acR.Rmd | 446 +-- vignettes/lda.Rmd | 694 ++-- vignettes/llm-local-em-escala.Rmd |only vignettes/qualitativo-llm.Rmd | 1250 ++++---- vignettes/quantitativo.Rmd | 670 ++-- vignettes/quickstart.Rmd | 174 - vignettes/replicabilidade.Rmd | 630 ++-- vignettes/sentimento.Rmd | 552 +-- vignettes/sentimento.csv | 18 vignettes/sentimento_resumo.csv | 18 vignettes/sentimento_resumo.tex | 36 194 files changed, 39760 insertions(+), 38316 deletions(-)
Title: Automated Soil Profile Classification per WRB 2022, 'SiBCS' 5
and USDA Soil Taxonomy 13
Description: Implements deterministic classification keys for the World
Reference Base for Soil Resources 2022 (4th edition) and the Brazilian
System of Soil Classification ('SiBCS', 5th edition). Provides a unified
profile representation with explicit per-attribute provenance, multimodal
extraction from field reports and photos via vision-language models,
spatial priors from 'SoilGrids' and national soil maps, and gap-filling of
soil attributes from Vis-NIR or MIR spectra via the Open Soil Spectral
Library ('OSSL'). The taxonomic key itself is never delegated to a language
model; LLMs are restricted to schema-validated extraction. Each
classification result reports a key trace, a provenance-aware evidence
grade, and ambiguities that further measurement would resolve.
Author: Hugo Rodrigues [aut, cre, cph]
Maintainer: Hugo Rodrigues <rodrigues.machado.hugo@gmail.com>
Diff between soilKey versions 0.9.184 dated 2026-07-07 and 0.9.259 dated 2026-10-14
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soilKey-0.9.259/soilKey/tests/testthat/test-v0928-designation-proxy.R | 1 soilKey-0.9.259/soilKey/tests/testthat/test-v0929-neossolo-litolico-heuristic.R | 3 soilKey-0.9.259/soilKey/tests/testthat/test-v0930-wosis-sample.R | 68 soilKey-0.9.259/soilKey/tests/testthat/test-v0933-wrb-qualifier-closure.R | 37 soilKey-0.9.259/soilKey/tests/testthat/test-v0935-quartzarenico-units.R | 3 soilKey-0.9.259/soilKey/tests/testthat/test-v0943-json-schema.R | 2 soilKey-0.9.259/soilKey/tests/testthat/test-v0945-color-undetermined.R | 6 soilKey-0.9.259/soilKey/tests/testthat/test-v0946-pls-training.R | 8 soilKey-0.9.259/soilKey/tests/testthat/test-v0952-vignette-pt.R | 2 soilKey-0.9.259/soilKey/tests/testthat/test-v0953-performance.R | 5 soilKey-0.9.259/soilKey/tests/testthat/test-v0954-smartsolos-api.R | 33 soilKey-0.9.259/soilKey/tests/testthat/test-v0955-bdsolos.R | 32 soilKey-0.9.259/soilKey/tests/testthat/test-v0961-diagnostic-fixes.R | 15 soilKey-0.9.259/soilKey/tests/testthat/test-v0962-aqp-interop.R | 8 soilKey-0.9.259/soilKey/tests/testthat/test-v0963-qualifiers.R | 133 soilKey-0.9.259/soilKey/tests/testthat/test-v0964-qualifiers.R | 127 soilKey-0.9.259/soilKey/tests/testthat/test-v0965-engine-and-tier3.R | 38 soilKey-0.9.259/soilKey/tests/testthat/test-v0968-b-latossolico-engine.R | 6 soilKey-0.9.259/soilKey/tests/testthat/test-v0970-ferralic-texture-morph.R | 13 soilKey-0.9.259/soilKey/tests/testthat/test-v0971-redape.R | 1 soilKey-0.9.259/soilKey/tests/testthat/test-v0979-mollic-vertic-priority.R | 1 soilKey-0.9.259/soilKey/tests/testthat/test-v0981-sibcs-subordem.R | 20 soilKey-0.9.259/soilKey/tests/testthat/test-v0983-argic-films-audit.R | 65 soilKey-0.9.259/soilKey/tests/testthat/test-v0985-andisol-buried-extend.R | 3 soilKey-0.9.259/soilKey/tests/testthat/test-v0986-ferralic-engine-aqp-fallback.R | 11 soilKey-0.9.259/soilKey/tests/testthat/test-v0989-texture-engine-fallback.R | 3 soilKey-0.9.259/soilKey/tests/testthat/test-v0990-argic-designation-inference.R | 21 soilKey-0.9.259/soilKey/tests/testthat/test-v0994-lazy-fetch.R | 1 soilKey-0.9.259/soilKey/tests/testthat/test-v0997-shiny-pro-app.R | 2 soilKey-0.9.259/soilKey/tests/testthat/test-v0998-tier3-strict.R | 4 soilKey-0.9.259/soilKey/tests/testthat/test-validate-rules.R | 1 soilKey-0.9.259/soilKey/tests/testthat/test-wrb-decomp-qualifiers.R | 13 soilKey-0.9.259/soilKey/tests/testthat/test-wrb-diagnostics-completeness-v09186.R |only soilKey-0.9.259/soilKey/vignettes/v02_classify_wrb_end_to_end.Rmd | 78 soilKey-0.9.259/soilKey/vignettes/v04_vlm_extraction.Rmd | 2 soilKey-0.9.259/soilKey/vignettes/v07_end_to_end_pipeline.Rmd | 2 400 files changed, 19762 insertions(+), 7641 deletions(-)
Title: Function and Pipeline Development
Description: Set of functions that perform checks according to the safer-r project recommendations for R function development (see <https://github.com/safer-r>). This includes checking argument values, ensuring correct specification of all mandatory arguments for embedded functions, as well as their explicit package namespace qualification, among other things.
Author: Haiding Wang [ctb],
Yushi Han [ctb],
Mia Legras [ctb],
Gael Millot [cre, aut, ctb]
Maintainer: Gael Millot <gael.millot@pasteur.fr>
Diff between saferDev versions 1.0.0 dated 2026-06-08 and 2.0.0 dated 2026-10-14
DESCRIPTION | 11 MD5 | 61 +-- NEWS.md | 7 R/all_args_here.R | 68 +++- R/arg_check.R | 209 +++++++------ R/colons_check.R | 52 ++- R/env_check.R | 53 ++- R/get_message.R | 64 +++ R/intern_.all_args_here_fill.R | 72 +++- R/intern_.base_op_check.R | 37 ++ R/intern_.colons_check_message.R | 68 +++- R/intern_.extract_all_fun_names.R | 57 ++- R/intern_.fun_args_pos.R | 56 ++- R/intern_.functions_detect.R | 52 ++- R/intern_.has_odd_number_of_quotes.R | 50 ++- R/intern_.in_parenthesis_replacement.R | 66 +++- R/intern_.in_quotes_replacement.R | 62 +++ R/intern_.noclean_functions.R | 60 +++ R/intern_.pack_and_function_check.R | 52 ++- R/is_function_here.R | 54 ++- R/is_package_here.R | 54 ++- R/report.R | 66 +++- build/vignette.rds |binary inst/doc/saferDev.Rmd | 4 inst/doc/saferDev.html | 12 man/arg_check.Rd | 57 ++- tests/testthat/Rplots.pdf |only tests/testthat/check_pos_fun_args_pos_internal_error_1.txt |only tests/testthat/test-.base_op_check.R | 1 tests/testthat/test-arg_check.R | 133 ++++++-- tests/testthat/test-get_message.R | 32 - tests/testthat/test-mandatory_args.R |only vignettes/saferDev.Rmd | 4 33 files changed, 1184 insertions(+), 390 deletions(-)
Title: 'Creates Color Palettes Inspired by Dune'
Description: Enables the use of color palettes inspired by the 'Dune' movies. These palettes are compatible with 'ggplot2'. See Wickham (2016) <doi:10.1007/978-3-319-24277-4> for more details on 'ggplot2'.
Author: Nicholas Vietto [aut, cre, cph]
Maintainer: Nicholas Vietto <nicholasvietto@gmail.com>
Diff between Rdune versions 1.1.1 dated 2024-07-29 and 1.1.2 dated 2026-10-14
Rdune-1.1.1/Rdune/man/figures/logo.jpg |only Rdune-1.1.2/Rdune/DESCRIPTION | 8 +- Rdune-1.1.2/Rdune/MD5 | 26 ++++---- Rdune-1.1.2/Rdune/NEWS.md | 4 + Rdune-1.1.2/Rdune/README.md | 29 ++++++++- Rdune-1.1.2/Rdune/build/partial.rdb |binary Rdune-1.1.2/Rdune/build/vignette.rds |binary Rdune-1.1.2/Rdune/inst/doc/my-vignette.R | 10 +-- Rdune-1.1.2/Rdune/inst/doc/my-vignette.Rmd | 19 ++---- Rdune-1.1.2/Rdune/inst/doc/my-vignette.html | 41 ++++++------- Rdune-1.1.2/Rdune/man/figures/README-example1-1.png |binary Rdune-1.1.2/Rdune/man/figures/README-example2-1.png |binary Rdune-1.1.2/Rdune/man/figures/README-unnamed-chunk-2-1.png |binary Rdune-1.1.2/Rdune/man/figures/logo.png |only Rdune-1.1.2/Rdune/vignettes/my-vignette.Rmd | 19 ++---- 15 files changed, 90 insertions(+), 66 deletions(-)
Title: Luck-Corrected Peer Performance Analysis in R
Description: Provides functions to perform the peer performance analysis of
funds' returns as described in Ardia and Boudt (2018)
<doi:10.1016/j.jbankfin.2017.10.014>. For each fund, the package estimates
the proportion of peers it outperforms, is equalled by, and is outperformed
by, correcting for luck with the false discovery approach of Storey (2002)
<doi:10.1111/1467-9868.00346>. Screenings can be based on factor-model
alphas, Sharpe ratios, or modified Sharpe ratios, the latter using the
equality test of Ardia and Boudt (2015) <doi:10.1016/j.frl.2015.02.008>.
Funds can be screened within a universe or against a separate peer group,
over rolling windows, and results come with peer-bootstrap
intervals, summary, plot, and tidy data frame methods.
Author: David Ardia [aut, cre, cph, fnd] ,
Nabil Bouamara [ctb],
Kris Boudt [aut] ,
Sebastien Legros [ctb],
Murilo Andre Peres Pereira [ctb] ,
Benjamin Seguin [ctb]
Maintainer: David Ardia <david.ardia.ch@gmail.com>
Diff between PeerPerformance versions 2.4.0 dated 2026-08-02 and 2.4.1 dated 2026-10-14
DESCRIPTION | 10 +- MD5 | 57 +++++++------- NEWS.md | 60 +++++++++++++++ R/alphaScreening.R | 47 +++++------- R/alphaTesting.R | 39 +++++----- R/computePi.R | 25 +++--- R/functions.R | 40 +++++++++- R/methods.R | 25 ++++-- R/msharpeScreening.R | 40 +++++----- R/msharpeTesting.R | 18 ++-- R/screeningXY.R | 35 +++++--- R/sharpeScreening.R | 40 +++++----- R/sharpeTesting.R | 20 +++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 - inst/doc/PeerPerformance.Rmd | 23 +++-- inst/doc/PeerPerformance.html | 42 +++++----- inst/scripts/validation-extended.R |only inst/scripts/validation.R | 12 +-- man/alphaScreening.Rd | 13 +-- man/confint.SCREENING.Rd | 18 ++-- man/exposureHeterogeneity.Rd | 4 - man/msharpeScreening.Rd | 19 ++-- man/msharpeTesting.Rd | 5 - man/sharpeScreening.Rd | 20 ++--- man/sharpeTesting.Rd | 7 + tests/testthat/test_numerical.R | 144 +++++++++++++++++++++++++++++++++++++ tests/testthat/test_screening.R | 19 ++++ vignettes/PeerPerformance.Rmd | 23 +++-- 30 files changed, 563 insertions(+), 246 deletions(-)
More information about PeerPerformance at CRAN
Permanent link
Title: Search and Explore BOLD Data Packages Efficiently
Description: Provides efficient tools for exploring and transforming
the Barcode of Life Data Systems (BOLD) data packages on local
machines. It enables fast local querying of the data packages without
relying on live API calls. Results can be easily converted into formats
compatible with widely used R packages and third party tools.
Author: Sameer Padhye [aut, cre],
Spencer K. Monckton [aut],
Dirk Steinke [ctb],
Jireh Agda [ctb],
Teresita M. Porter [ctb]
Maintainer: Sameer Padhye <spadhye@uoguelph.ca>
Diff between BOLDNODE versions 1.0.0 dated 2026-09-09 and 1.0.1 dated 2026-10-14
DESCRIPTION | 13 ++--- MD5 | 18 +++---- NAMESPACE | 99 +++++++++++++++++++++++------------------ R/external.bcdm_to_occmatrix.R | 2 R/external.get_bin_consensus.R | 17 ++++--- R/helper.functions.R | 2 inst/doc/Using_BOLDNODE.R | 8 +-- inst/doc/Using_BOLDNODE.Rmd | 8 +-- inst/doc/Using_BOLDNODE.html | 70 ++++++++++++++-------------- vignettes/Using_BOLDNODE.Rmd | 8 +-- 10 files changed, 132 insertions(+), 113 deletions(-)
Title: A Package for BInary Longitudinal Data
Description: Performs logistic regression for binary longitudinal
data, allowing for serial dependence among observations from a given
individual and a random intercept term. Estimation is via maximization
of the exact likelihood of a suitably defined model. Missing values and
unbalanced data are allowed, with some restrictions.
M. Helena Goncalves et al. (2012) <DOI: 10.18637/jss.v046.i09>.
Author: M. Helena Goncalves [aut, cre] ,
M. Salome Cabral [aut],
Adelchi Azzalini [aut],
R. Piessens [ctb] ,
E. de Doncker [ctb]
Maintainer: M. Helena Goncalves <mhgoncal@ualg.pt>
Diff between bild versions 1.2-1 dated 2023-11-03 and 1.3-0 dated 2026-10-14
bild-1.2-1/bild/R/anova_bild.R |only bild-1.2-1/bild/R/bild.R |only bild-1.2-1/bild/R/bildControl.R |only bild-1.2-1/bild/R/bildIntegrate.R |only bild-1.2-1/bild/R/fitted_bild.R |only bild-1.2-1/bild/R/fixeff_bild.R |only bild-1.2-1/bild/R/getAIC_bild.R |only bild-1.2-1/bild/R/getLogLik_bild.R |only bild-1.2-1/bild/R/getcoef_bild.R |only bild-1.2-1/bild/R/getvcov_bild.R |only bild-1.2-1/bild/R/modelmatrix_bild.R |only bild-1.2-1/bild/R/randeff_bild.R |only bild-1.2-1/bild/R/show_bild.R |only bild-1.2-1/bild/R/show_summary.bild.R |only bild-1.2-1/bild/R/summary_bild.R |only bild-1.2-1/bild/R/vareff_bild.R |only bild-1.2-1/bild/man/airpollution.rd |only bild-1.2-1/bild/man/anova-methods.Rd |only bild-1.2-1/bild/man/bild-internal.Rd |only bild-1.2-1/bild/man/fitted-methods.Rd |only bild-1.2-1/bild/man/fixeff-methods.Rd |only bild-1.2-1/bild/man/getAIC-methods.Rd |only bild-1.2-1/bild/man/getLogLik-methods.Rd |only bild-1.2-1/bild/man/getcoef-methods.Rd |only bild-1.2-1/bild/man/getvcov-methods.Rd |only bild-1.2-1/bild/man/locust.rd |only bild-1.2-1/bild/man/modelmatrix-methods.Rd |only bild-1.2-1/bild/man/modelmatrix.Rd |only bild-1.2-1/bild/man/muscatine.rd |only bild-1.2-1/bild/man/plot-methods.Rd |only bild-1.2-1/bild/man/randeff-methods.Rd |only bild-1.2-1/bild/man/show-methods.Rd |only bild-1.2-1/bild/man/summary-methods.Rd |only bild-1.2-1/bild/man/vareff-methods.Rd |only bild-1.3-0/bild/DESCRIPTION | 68 +- bild-1.3-0/bild/MD5 | 91 +-- bild-1.3-0/bild/NAMESPACE | 78 ++ bild-1.3-0/bild/NEWS | 8 bild-1.3-0/bild/R/autoplot.bild.R |only bild-1.3-0/bild/R/bild_main.R |only bild-1.3-0/bild/R/classes_and_generics.R |only bild-1.3-0/bild/R/data.R |only bild-1.3-0/bild/R/methods_complex.R |only bild-1.3-0/bild/R/methods_getters.R |only bild-1.3-0/bild/R/plot_bild_missing.R | 833 ++++++++++++++--------------- bild-1.3-0/bild/R/predict.bild.R |only bild-1.3-0/bild/R/zzz.R |only bild-1.3-0/bild/build |only bild-1.3-0/bild/man/airpollution.Rd |only bild-1.3-0/bild/man/anova-bild-method.Rd |only bild-1.3-0/bild/man/autoplot.bild.Rd |only bild-1.3-0/bild/man/bild-class.Rd | 120 ++-- bild-1.3-0/bild/man/bild-package.Rd | 56 - bild-1.3-0/bild/man/bild.Rd | 231 ++------ bild-1.3-0/bild/man/bildControl.Rd | 48 - bild-1.3-0/bild/man/bildIntegrate.Rd | 143 ++-- bild-1.3-0/bild/man/fitted.bild.Rd |only bild-1.3-0/bild/man/fixeff.Rd | 30 - bild-1.3-0/bild/man/getAIC.Rd | 32 - bild-1.3-0/bild/man/getLogLik.Rd | 33 - bild-1.3-0/bild/man/getVariance.Rd |only bild-1.3-0/bild/man/getcoef.Rd | 30 - bild-1.3-0/bild/man/getvcov.Rd | 31 - bild-1.3-0/bild/man/glance-bild.Rd |only bild-1.3-0/bild/man/locust.Rd |only bild-1.3-0/bild/man/model.mat.Rd |only bild-1.3-0/bild/man/muscatine.Rd |only bild-1.3-0/bild/man/plot-bild-method.Rd |only bild-1.3-0/bild/man/predict.bild.Rd |only bild-1.3-0/bild/man/randeff.Rd | 31 - bild-1.3-0/bild/man/show-bild-method.Rd |only bild-1.3-0/bild/man/summary-bild-method.Rd |only bild-1.3-0/bild/man/summary.bild-class.Rd | 70 +- bild-1.3-0/bild/man/tidy-bild.Rd |only bild-1.3-0/bild/man/vareff.Rd | 31 - 75 files changed, 1016 insertions(+), 948 deletions(-)
Title: Fractional Weighted Bootstrap
Description: An implementation of the fractional weighted bootstrap to be used as a drop-in for functions in the 'boot' package. The fractional weighted bootstrap (also known as the Bayesian bootstrap) involves drawing weights randomly that are applied to the data rather than resampling units from the data. See Xu et al. (2020) <doi:10.1080/00031305.2020.1731599> for details.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between fwb versions 0.6.0 dated 2026-05-29 and 1.0.0 dated 2026-10-14
DESCRIPTION | 21 - MD5 | 91 ++++-- NEWS.md | 86 ++++++ R/compute.ci.R | 72 +++++ R/fwb.R | 398 ++++++++++++++++++++---------- R/fwb.array.R | 79 ++++- R/fwb.ci.R | 52 ++- R/plot.fwb.R | 4 R/set_fwb_wtype.R | 2 R/simultaneous.R | 102 ++++--- R/summary.fwb.R | 18 - R/utils.R | 209 ++++++++++----- R/vcovFWB.R | 267 +++++++++++++++----- R/weighted-statistics.R | 22 - README.md | 134 ++++++---- build/stage23.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/doc/fwb-rep.R |only inst/doc/fwb-rep.Rmd | 115 ++++---- inst/doc/fwb-rep.html | 375 +++++++++++++++------------- man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/figures/logo.png |only man/fwb-package.Rd | 2 man/fwb.Rd | 37 +- man/fwb.array.Rd | 4 man/fwb.ci.Rd | 19 + man/plot.fwb.Rd | 2 man/set_fwb_wtype.Rd | 2 man/summary.fwb.Rd | 8 man/vcovFWB.Rd | 28 +- man/w_mean.Rd | 8 tests/testthat/helpers.R | 388 ++++++++++++++++++++++++++++- tests/testthat/setup.R |only tests/testthat/test-boot.R | 2 tests/testthat/test-futurize.R |only tests/testthat/test-fwb-array.R |only tests/testthat/test-fwb-ci.R |only tests/testthat/test-fwb.R | 103 ++++--- tests/testthat/test-input-guards.R |only tests/testthat/test-p-values.R | 18 - tests/testthat/test-plot.R |only tests/testthat/test-progressify.R |only tests/testthat/test-replicability.R |only tests/testthat/test-strata.R |only tests/testthat/test-summary.R |only tests/testthat/test-vcovFWB-internals.R |only tests/testthat/test-vcovFWB.R | 35 -- tests/testthat/test-w_mean.R | 4 tests/testthat/test-weighted-statistics.R |only tests/testthat/test-wtypes.R |only vignettes/fwb-rep.Rmd | 115 ++++---- vignettes/references.bib |only 55 files changed, 1974 insertions(+), 848 deletions(-)
Title: Density Estimation with Semidefinite Programming
Description: The models of probability density functions are Gaussian or
exponential distributions with polynomial correction terms.
Using a maximum likelihood method, 'dsdp' computes parameters of Gaussian
or exponential distributions together with degrees of polynomials by
a grid search, and coefficient of polynomials by a variant of semidefinite
programming. It adopts Akaike Information Criterion for model selection.
See a vignette for a tutorial and more on our 'Github' repository
<https://github.com/tsuchiya-lab/dsdp/>.
Author: Satoshi Kakihara [aut, cre],
Takashi Tsuchiya [aut]
Maintainer: Satoshi Kakihara <skakihara@gmail.com>
This is a re-admission after prior archival of version 0.1.2 dated 2026-08-21
Diff between dsdp versions 0.1.2 dated 2026-08-21 and 0.1.3 dated 2026-10-14
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/Tutorial.pdf |binary src/slatec/dgamit.f | 2 +- 5 files changed, 13 insertions(+), 9 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrology and Water Quality
Data
Description: Collection of functions to help retrieve U.S. Geological Survey
and U.S. Environmental Protection Agency water quality and
hydrology data from web services.
Author: Laura DeCicco [aut, cre] ,
Robert Hirsch [aut] ,
David Lorenz [aut],
Jordan Read [ctb],
Jordan Walker [ctb],
Lindsay Platt [ctb],
David Watkins [aut] ,
David Blodgett [aut] ,
Mike Johnson [aut] ,
Aliesha Krall [ctb] ,
Lee Stanish [ctb] ,
Joseph Zemme [...truncated...]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between dataRetrieval versions 2.7.26 dated 2026-09-10 and 2.7.27 dated 2026-10-14
dataRetrieval-2.7.26/dataRetrieval/man/readNWISuse.Rd |only dataRetrieval-2.7.27/dataRetrieval/DESCRIPTION | 8 dataRetrieval-2.7.27/dataRetrieval/MD5 | 87 +- dataRetrieval-2.7.27/dataRetrieval/NAMESPACE | 1 dataRetrieval-2.7.27/dataRetrieval/NEWS.md | 7 dataRetrieval-2.7.27/dataRetrieval/R/constructNWISURL.R | 8 dataRetrieval-2.7.27/dataRetrieval/R/readNWISdata.R | 191 ++--- dataRetrieval-2.7.27/dataRetrieval/R/readNWISdv.R | 65 - dataRetrieval-2.7.27/dataRetrieval/R/readNWISpCode.R | 194 ++--- dataRetrieval-2.7.27/dataRetrieval/R/readNWISsite.R | 76 +- dataRetrieval-2.7.27/dataRetrieval/R/readNWISunit.R | 380 +++++----- dataRetrieval-2.7.27/dataRetrieval/R/readWQPdata.R | 2 dataRetrieval-2.7.27/dataRetrieval/R/read_waterdata_continuous.R | 2 dataRetrieval-2.7.27/dataRetrieval/R/read_waterdata_field_measurements.R | 2 dataRetrieval-2.7.27/dataRetrieval/R/read_waterdata_field_meta.R | 3 dataRetrieval-2.7.27/dataRetrieval/R/renameColumns.R | 13 dataRetrieval-2.7.27/dataRetrieval/R/whatNWISdata.R | 203 ++--- dataRetrieval-2.7.27/dataRetrieval/R/whatNWISsites.R | 171 ++-- dataRetrieval-2.7.27/dataRetrieval/inst/CITATION | 6 dataRetrieval-2.7.27/dataRetrieval/inst/doc/dataRetrieval.html | 8 dataRetrieval-2.7.27/dataRetrieval/man/get_monitoring_location_arguments.Rd | 32 dataRetrieval-2.7.27/dataRetrieval/man/readNWISdata.Rd | 13 dataRetrieval-2.7.27/dataRetrieval/man/readNWISdv.Rd | 25 dataRetrieval-2.7.27/dataRetrieval/man/readNWISpCode.Rd | 7 dataRetrieval-2.7.27/dataRetrieval/man/readNWISpeak.Rd | 8 dataRetrieval-2.7.27/dataRetrieval/man/readNWISrating.Rd | 12 dataRetrieval-2.7.27/dataRetrieval/man/readNWISsite.Rd | 7 dataRetrieval-2.7.27/dataRetrieval/man/readNWISstat.Rd | 8 dataRetrieval-2.7.27/dataRetrieval/man/readNWISuv.Rd | 14 dataRetrieval-2.7.27/dataRetrieval/man/readWQPdata.Rd | 2 dataRetrieval-2.7.27/dataRetrieval/man/read_waterdata_combined_meta.Rd | 32 dataRetrieval-2.7.27/dataRetrieval/man/read_waterdata_continuous.Rd | 7 dataRetrieval-2.7.27/dataRetrieval/man/read_waterdata_daily.Rd | 4 dataRetrieval-2.7.27/dataRetrieval/man/read_waterdata_field_measurements.Rd | 9 dataRetrieval-2.7.27/dataRetrieval/man/read_waterdata_field_meta.Rd | 13 dataRetrieval-2.7.27/dataRetrieval/man/read_waterdata_latest_continuous.Rd | 2 dataRetrieval-2.7.27/dataRetrieval/man/read_waterdata_latest_daily.Rd | 4 dataRetrieval-2.7.27/dataRetrieval/man/read_waterdata_latest_field_measurements.Rd | 4 dataRetrieval-2.7.27/dataRetrieval/man/read_waterdata_monitoring_location.Rd | 28 dataRetrieval-2.7.27/dataRetrieval/man/read_waterdata_peaks.Rd | 2 dataRetrieval-2.7.27/dataRetrieval/man/read_waterdata_ts_meta.Rd | 6 dataRetrieval-2.7.27/dataRetrieval/man/renameNWISColumns.Rd | 14 dataRetrieval-2.7.27/dataRetrieval/man/whatNWISdata.Rd | 24 dataRetrieval-2.7.27/dataRetrieval/man/whatNWISsites.Rd | 7 dataRetrieval-2.7.27/dataRetrieval/tests/testthat/tests_general.R | 15 45 files changed, 873 insertions(+), 853 deletions(-)
Title: 'AV1' Video Encoding for Biological Microscopy Data
Description: Converts microscopy video and image data (H.264/H.265,
AVI/MJPEG, TIFF stacks) to the 'AV1' codec for compact storage, and
archives 16-bit image stacks and videos losslessly in the 'FFV1'
format. Encoding runs on the GPU via 'Vulkan' or 'VAAPI' when
available and falls back to the CPU through 'FFmpeg' and 'SVT-AV1'.
Whole experiment folders can be converted at once.
Author: Yuri Baramykov [aut, cre] ,
The Khronos Group Inc. [cph],
FFmpeg developers [cph]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between AV1R versions 0.1.4 dated 2026-10-12 and 0.1.4.1 dated 2026-10-14
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 6 ++++++ src/av1r_commands.cpp | 1 + src/av1r_device.cpp | 1 + src/av1r_encode_vulkan.cpp | 1 + src/av1r_ffv1_encoder.h | 1 + src/av1r_ffv1_gpu.cpp | 1 + src/av1r_ffv1_gpu_encoder.cpp | 1 + src/av1r_ffv1_rangecoder.h | 1 + src/av1r_memory.cpp | 1 + src/av1r_mkv_writer.h | 1 + 12 files changed, 29 insertions(+), 14 deletions(-)
Title: Shared Utilities to Extend the 'teal' Modules
Description: Provides decorators, transformators, and utility functions
to extend the 'teal' framework for interactive data analysis
applications. Implements methods for data visualization enhancement,
statistical data transformations, and workflow integration tools.
Designed to support clinical and pharmaceutical research workflows
within the 'teal' ecosystem through modular and reusable components.
Author: Nadia Abraham [aut],
Chanchal Bhalla [aut],
Peyman Eshghi [aut, cre],
Pranith Gourisetty [aut],
Sohan Lal [aut],
Przemyslaw Posiadala [aut],
Alina Tselinina [aut],
Konrad Pagacz [aut],
PHUSE [cph]
Maintainer: Peyman Eshghi <peymaan.es@gmail.com>
Diff between uteals versions 0.0.5 dated 2026-07-09 and 0.0.6 dated 2026-10-14
DESCRIPTION | 10 +++++----- MD5 | 9 ++++++--- NAMESPACE | 1 + NEWS.md | 4 ++++ R/freeze_tables.R |only man/use_freeze_tables.Rd |only tests/testthat/test-freeze_tables.R |only 7 files changed, 16 insertions(+), 8 deletions(-)
Title: Presidential Election Data of "Sri Lanka" from 1982 to 2019
Description: Provides Sri Lankan presidential election results for
1982, 1988, 1994, 1999, 2005, 2010, 2015, and 2019. The datasets
contain candidate vote counts, reported percentages, and summary
statistics for polling divisions and district results, including
postal and displaced votes where available. Results were extracted
from PDF documents and prepared in a consistent tabular format.
Author: Amalan Mahendran [aut, cre]
Maintainer: Amalan Mahendran <amalan0595@gmail.com>
Diff between SLPresElection versions 1.0.0 dated 2023-01-17 and 1.1.0 dated 2026-10-14
DESCRIPTION | 32 MD5 | 70 + NAMESPACE | 1 R/Data.R | 390 +++++++---- R/zzz.R |only build |only data/Election1982.rda |binary data/Election1988.rda |binary data/Election1994.rda |binary data/Election1999.rda |binary data/Election2005.rda |binary data/Election2010.rda |binary data/Election2015.rda |binary data/Election2019.rda |only inst/WORDLIST | 107 ++- inst/doc |only man/Election1982.Rd | 44 - man/Election1988.Rd | 46 - man/Election1994.Rd | 45 - man/Election1999.Rd | 45 - man/Election2005.Rd | 51 - man/Election2010.Rd | 44 - man/Election2015.Rd | 45 - man/Election2019.Rd |only man/figures/Registered_and_Polled_Votes-1.png |binary man/figures/Registered_and_Polled_Votes_over_the_years-1.png |binary man/figures/Rejected_Votes_over_the_years-1.png |binary vignettes |only 28 files changed, 645 insertions(+), 275 deletions(-)
More information about SLPresElection at CRAN
Permanent link
Title: Interface to the Biological Magnetic Resonance Data Bank
('BMRB')
Description: A comprehensive interface to the Biological Magnetic Resonance
Data Bank ('BMRB') <https://bmrb.io>, mirroring all functionality of the
'PyBMRB' 'Python' package (v3.0). Provides four modules: (1) 'ChemicalShift'
for fetching per-entry chemical shift data from the 'BMRB' 'REST' 'API'
or local 'NMR-STAR' files; (2) 'ChemicalShiftStatistics' for database-wide
statistical queries; (3) Spectra for simulating '1H-15N' 'HSQC', '1H-13C'
'HSQC', '1H-1H' 'TOCSY', and generic 2D 'NMR' spectra as interactive plots;
and (4) Histogram for chemical shift distribution visualizations with
optional filtering by pH, temperature, and ambiguity code.
All interactive plots are rendered via 'plotly'.
Uses the 'BMRB' REST API v2 <https://api.bmrb.io/v2/>.
Author: Kumaran Baskaran [aut, cre]
Maintainer: Kumaran Baskaran <baskaran@uchc.edu>
This is a re-admission after prior archival of version 2.1.7 dated 2021-07-11
Diff between RBMRB versions 2.1.7 dated 2021-07-11 and 3.0.0 dated 2026-10-14
RBMRB-2.1.7/RBMRB/R/RBMRB.R |only RBMRB-2.1.7/RBMRB/man/HSQC_13C.Rd |only RBMRB-2.1.7/RBMRB/man/HSQC_15N.Rd |only RBMRB-2.1.7/RBMRB/man/TOCSY.Rd |only RBMRB-2.1.7/RBMRB/man/atom_chem_shift_corr.Rd |only RBMRB-2.1.7/RBMRB/man/chem_shift_corr.Rd |only RBMRB-2.1.7/RBMRB/man/chemical_shift_hist.Rd |only RBMRB-2.1.7/RBMRB/man/chemical_shift_hist_res.Rd |only RBMRB-2.1.7/RBMRB/man/chemical_shift_hists.Rd |only RBMRB-2.1.7/RBMRB/man/convert_cs_to_c13hsqc.Rd |only RBMRB-2.1.7/RBMRB/man/convert_cs_to_n15hsqc.Rd |only RBMRB-2.1.7/RBMRB/man/convert_cs_to_tocsy.Rd |only RBMRB-2.1.7/RBMRB/man/export_star_data.Rd |only RBMRB-2.1.7/RBMRB/man/fetch_atom_chemical_shifts.Rd |only RBMRB-2.1.7/RBMRB/man/fetch_entry_chemical_shifts.Rd |only RBMRB-2.1.7/RBMRB/man/fetch_entry_cs.Rd |only RBMRB-2.1.7/RBMRB/man/fetch_res_chemical_shifts.Rd |only RBMRB-2.1.7/RBMRB/man/filter_outlier.Rd |only RBMRB-2.1.7/RBMRB/man/filter_residue.Rd |only RBMRB-2.1.7/RBMRB/man/makeRandomString.Rd |only RBMRB-3.0.0/RBMRB/DESCRIPTION | 60 ++++++++----- RBMRB-3.0.0/RBMRB/MD5 | 83 +++++++++++++------ RBMRB-3.0.0/RBMRB/NAMESPACE | 56 ++++++++---- RBMRB-3.0.0/RBMRB/NEWS.md |only RBMRB-3.0.0/RBMRB/R/api_utils.R |only RBMRB-3.0.0/RBMRB/R/chemical_shift.R |only RBMRB-3.0.0/RBMRB/R/chemical_shift_statistics.R |only RBMRB-3.0.0/RBMRB/R/colors.R |only RBMRB-3.0.0/RBMRB/R/histogram.R |only RBMRB-3.0.0/RBMRB/R/nmrstar_parser.R |only RBMRB-3.0.0/RBMRB/R/spectra.R |only RBMRB-3.0.0/RBMRB/R/utils.R |only RBMRB-3.0.0/RBMRB/R/zzz.R |only RBMRB-3.0.0/RBMRB/README.md |only RBMRB-3.0.0/RBMRB/build |only RBMRB-3.0.0/RBMRB/inst |only RBMRB-3.0.0/RBMRB/man/RBMRB-package.Rd |only RBMRB-3.0.0/RBMRB/man/RBMRB_version.Rd |only RBMRB-3.0.0/RBMRB/man/bmrb_citation.Rd |only RBMRB-3.0.0/RBMRB/man/bmrb_debug_entry.Rd |only RBMRB-3.0.0/RBMRB/man/bmrb_fetch_entry.Rd |only RBMRB-3.0.0/RBMRB/man/bmrb_from_pdb.Rd |only RBMRB-3.0.0/RBMRB/man/bmrb_list_entries.Rd |only RBMRB-3.0.0/RBMRB/man/bmrb_pdb_ids.Rd |only RBMRB-3.0.0/RBMRB/man/bmrb_search.Rd |only RBMRB-3.0.0/RBMRB/man/bmrb_status.Rd |only RBMRB-3.0.0/RBMRB/man/bmrb_test.Rd |only RBMRB-3.0.0/RBMRB/man/bmrb_upload_entry.Rd |only RBMRB-3.0.0/RBMRB/man/c13hsqc.Rd |only RBMRB-3.0.0/RBMRB/man/conditional_cs_hist.Rd |only RBMRB-3.0.0/RBMRB/man/create_2d_peaklist.Rd |only RBMRB-3.0.0/RBMRB/man/create_c13hsqc_peaklist.Rd |only RBMRB-3.0.0/RBMRB/man/create_n15hsqc_peaklist.Rd |only RBMRB-3.0.0/RBMRB/man/create_tocsy_peaklist.Rd |only RBMRB-3.0.0/RBMRB/man/cs_from_bmrb.Rd |only RBMRB-3.0.0/RBMRB/man/cs_from_file.Rd |only RBMRB-3.0.0/RBMRB/man/cs_hist.Rd |only RBMRB-3.0.0/RBMRB/man/cs_hist2d.Rd |only RBMRB-3.0.0/RBMRB/man/cs_peek.Rd |only RBMRB-3.0.0/RBMRB/man/cs_stats.Rd |only RBMRB-3.0.0/RBMRB/man/cs_summary.Rd |only RBMRB-3.0.0/RBMRB/man/cs_table.Rd |only RBMRB-3.0.0/RBMRB/man/cs_to_df.Rd |only RBMRB-3.0.0/RBMRB/man/export_peak_list.Rd |only RBMRB-3.0.0/RBMRB/man/filter_cs_outliers.Rd |only RBMRB-3.0.0/RBMRB/man/generic_2d.Rd |only RBMRB-3.0.0/RBMRB/man/get_2d_cs_data.Rd |only RBMRB-3.0.0/RBMRB/man/get_cs_data.Rd |only RBMRB-3.0.0/RBMRB/man/get_cs_from_bmrb_db.Rd |only RBMRB-3.0.0/RBMRB/man/n15hsqc.Rd |only RBMRB-3.0.0/RBMRB/man/standard_amino_acids.Rd |only RBMRB-3.0.0/RBMRB/man/standard_nucleic_acids.Rd |only RBMRB-3.0.0/RBMRB/man/tocsy.Rd |only RBMRB-3.0.0/RBMRB/tests |only RBMRB-3.0.0/RBMRB/vignettes |only 75 files changed, 135 insertions(+), 64 deletions(-)
Title: Gaussian Kernel Robust Regression (GKRReg)
Description: Implements the Gaussian Kernel Robust Regression (GKRReg / GKRR)
method proposed by De Carvalho, Lima Neto and Ferreira (2017)
<doi:10.1016/j.neucom.2016.12.035>. The method re-weights observations
iteratively using the Gaussian kernel so that poorly-fitted observations
(outliers, leverage points) receive small weights, yielding resistance to
Y-space outliers, X-space outliers and leverage points. Convergence is
guaranteed by Propositions 4.1 and 4.2 of the original paper. Four
estimators for the kernel width hyper-parameter are provided (S1: Caputo,
S2: pairwise median, S3: residual variance, S4: corrected Akaike
bandwidth), together with a data-driven selection rule. Inference is
provided by a sandwich variance estimator with a family of
heteroskedasticity-consistent finite-sample corrections adapted to the
weighted leverage of the method, or by a pairs bootstrap that re-estimates
the kernel width on each replicate (percentile, normal and bias-corrected
accelerated intervals wi [...truncated...]
Author: Eufrasio de Andrade Lima Neto [aut],
Marcelo Rodrigo Portela Ferreira [aut, cre]
Maintainer: Marcelo Rodrigo Portela Ferreira <marcelo@de.ufpb.br>
Diff between gkrreg versions 0.4.0 dated 2026-06-17 and 0.5.0 dated 2026-10-14
gkrreg-0.4.0/gkrreg/inst/doc/introduction.R |only gkrreg-0.4.0/gkrreg/inst/doc/introduction.Rmd |only gkrreg-0.4.0/gkrreg/inst/doc/introduction.html |only gkrreg-0.4.0/gkrreg/vignettes/introduction.Rmd |only gkrreg-0.5.0/gkrreg/DESCRIPTION | 25 +++++---- gkrreg-0.5.0/gkrreg/MD5 | 55 +++++++++++--------- gkrreg-0.5.0/gkrreg/NAMESPACE | 4 + gkrreg-0.5.0/gkrreg/NEWS.md | 47 +++++++++++++++++ gkrreg-0.5.0/gkrreg/R/data.R | 12 ++-- gkrreg-0.5.0/gkrreg/R/gkrr.R | 48 ++++++++++++++--- gkrreg-0.5.0/gkrreg/R/gkrr_boot.R | 12 +++- gkrreg-0.5.0/gkrreg/R/gkrr_vcov.R |only gkrreg-0.5.0/gkrreg/R/gkrreg-package.R | 3 - gkrreg-0.5.0/gkrreg/build/partial.rdb |binary gkrreg-0.5.0/gkrreg/build/vignette.rds |binary gkrreg-0.5.0/gkrreg/inst/doc/gkrreg.R |only gkrreg-0.5.0/gkrreg/inst/doc/gkrreg.Rmd |only gkrreg-0.5.0/gkrreg/inst/doc/gkrreg.html |only gkrreg-0.5.0/gkrreg/man/belgium_calls.Rd | 2 gkrreg-0.5.0/gkrreg/man/cloud_point.Rd | 2 gkrreg-0.5.0/gkrreg/man/delivery.Rd | 2 gkrreg-0.5.0/gkrreg/man/gkrr.Rd | 9 ++- gkrreg-0.5.0/gkrreg/man/gkrr_jackknife.Rd |only gkrreg-0.5.0/gkrreg/man/gkrr_vcov.Rd |only gkrreg-0.5.0/gkrreg/man/gkrr_vcov_all.Rd |only gkrreg-0.5.0/gkrreg/man/gkrreg-package.Rd | 3 - gkrreg-0.5.0/gkrreg/man/kootenay.Rd | 2 gkrreg-0.5.0/gkrreg/man/mammals.Rd | 2 gkrreg-0.5.0/gkrreg/man/sigma2_estimators.Rd | 6 +- gkrreg-0.5.0/gkrreg/man/stars_cyg.Rd | 2 gkrreg-0.5.0/gkrreg/man/vcov.gkrr.Rd |only gkrreg-0.5.0/gkrreg/tests/testthat.R |only gkrreg-0.5.0/gkrreg/tests/testthat/test-gkrr-vcov.R |only gkrreg-0.5.0/gkrreg/tests/testthat/test-gkrr.R | 5 - gkrreg-0.5.0/gkrreg/vignettes/gkrreg.Rmd |only gkrreg-0.5.0/gkrreg/vignettes/references.bib | 42 +++++++++++++++ 36 files changed, 215 insertions(+), 68 deletions(-)
Title: Methods and Measures for Semantic Network Analysis
Description: Implements several functions for the analysis of semantic networks including different network estimation algorithms, partial node bootstrapping (Kenett, Anaki, & Faust, 2014 <doi:10.3389/fnhum.2014.00407>), random walk simulation, and a function to compute global network measures. Significance tests, including permutation testing, and plotting features are also implemented.
Author: Alexander P. Christensen [aut, cre] ,
Yoed N. Kenett [aut, ctb]
Maintainer: Alexander P. Christensen <alexpaulchristensen@gmail.com>
Diff between SemNeT versions 2.0.0 dated 2026-09-12 and 2.1.0 dated 2026-10-14
SemNeT-2.0.0/SemNeT/NEWS.md |only SemNeT-2.0.0/SemNeT/man/responses_to_binary.Rd |only SemNeT-2.0.0/SemNeT/tests |only SemNeT-2.1.0/SemNeT/DESCRIPTION | 12 SemNeT-2.1.0/SemNeT/MD5 | 171 - SemNeT-2.1.0/SemNeT/NAMESPACE | 11 SemNeT-2.1.0/SemNeT/NEWS |only SemNeT-2.1.0/SemNeT/R/SemNeT-package.R | 6 SemNeT-2.1.0/SemNeT/R/SemNeTShiny.R | 13 SemNeT-2.1.0/SemNeT/R/aspl.R | 146 - SemNeT-2.1.0/SemNeT/R/bootstrap_SemNeT.R | 751 +++-- SemNeT-2.1.0/SemNeT/R/bootstrap_test_SemNeT.R | 1737 ++++++++++-- SemNeT-2.1.0/SemNeT/R/cc.R | 112 SemNeT-2.1.0/SemNeT/R/cn.R | 300 +- SemNeT-2.1.0/SemNeT/R/compare_networks.R | 165 - SemNeT-2.1.0/SemNeT/R/convert2cytoscape.R | 31 SemNeT-2.1.0/SemNeT/R/convert2igraph.R | 31 SemNeT-2.1.0/SemNeT/R/equate.R | 88 SemNeT-2.1.0/SemNeT/R/finalize.R | 53 SemNeT-2.1.0/SemNeT/R/forward_flow.R | 226 + SemNeT-2.1.0/SemNeT/R/helpers.R | 928 ++++-- SemNeT-2.1.0/SemNeT/R/legacy.R | 301 +- SemNeT-2.1.0/SemNeT/R/nrw.R | 130 SemNeT-2.1.0/SemNeT/R/permutation_SemNeT.R | 1008 +++++- SemNeT-2.1.0/SemNeT/R/pf.R | 345 +- SemNeT-2.1.0/SemNeT/R/plot.bootstrap_SemNeT.R | 192 - SemNeT-2.1.0/SemNeT/R/q.R | 114 SemNeT-2.1.0/SemNeT/R/random_network_test.R | 272 + SemNeT-2.1.0/SemNeT/R/random_walk.R | 338 +- SemNeT-2.1.0/SemNeT/R/response_analysis.R | 218 + SemNeT-2.1.0/SemNeT/R/semantic_network_measures.R | 118 SemNeT-2.1.0/SemNeT/R/shiny_helpers.R | 120 SemNeT-2.1.0/SemNeT/R/similarity.R | 134 SemNeT-2.1.0/SemNeT/R/simulate_fluency.R | 72 SemNeT-2.1.0/SemNeT/R/tmfg.R | 207 + SemNeT-2.1.0/SemNeT/R/zzz.R | 56 SemNeT-2.1.0/SemNeT/inst/Shiny/R/mod_bootstrap.R | 251 + SemNeT-2.1.0/SemNeT/inst/Shiny/R/mod_export.R | 94 SemNeT-2.1.0/SemNeT/inst/Shiny/R/mod_load_data.R | 206 + SemNeT-2.1.0/SemNeT/inst/Shiny/R/mod_network_estimation.R | 104 SemNeT-2.1.0/SemNeT/inst/Shiny/R/mod_permutation.R | 145 - SemNeT-2.1.0/SemNeT/inst/Shiny/R/mod_random_network.R | 76 SemNeT-2.1.0/SemNeT/inst/Shiny/R/mod_random_walk.R | 97 SemNeT-2.1.0/SemNeT/inst/Shiny/R/mod_shared.R | 144 SemNeT-2.1.0/SemNeT/inst/Shiny/R/mod_spreading_activation.R | 107 SemNeT-2.1.0/SemNeT/inst/Shiny/global.R | 43 SemNeT-2.1.0/SemNeT/inst/Shiny/server.R | 67 SemNeT-2.1.0/SemNeT/inst/Shiny/ui.R | 34 SemNeT-2.1.0/SemNeT/man/aspl.Rd | 46 SemNeT-2.1.0/SemNeT/man/binary2responses.Rd |only SemNeT-2.1.0/SemNeT/man/bootstrap_SemNeT.Rd | 144 SemNeT-2.1.0/SemNeT/man/bootstrap_test_SemNeT.Rd | 256 + SemNeT-2.1.0/SemNeT/man/cc.Rd | 19 SemNeT-2.1.0/SemNeT/man/cn.Rd | 22 SemNeT-2.1.0/SemNeT/man/compare_networks.Rd | 4 SemNeT-2.1.0/SemNeT/man/find_textcleaner_objects.Rd |only SemNeT-2.1.0/SemNeT/man/forward_flow.Rd | 7 SemNeT-2.1.0/SemNeT/man/nrw.Rd | 13 SemNeT-2.1.0/SemNeT/man/permutation_SemNeT.Rd | 236 + SemNeT-2.1.0/SemNeT/man/pf.Rd | 47 SemNeT-2.1.0/SemNeT/man/plot.bootstrap_SemNeT.Rd | 19 SemNeT-2.1.0/SemNeT/man/q.Rd | 18 SemNeT-2.1.0/SemNeT/man/randnet.test.Rd | 7 SemNeT-2.1.0/SemNeT/man/random_network_test.Rd | 60 SemNeT-2.1.0/SemNeT/man/random_walk.Rd | 44 SemNeT-2.1.0/SemNeT/man/randwalk.Rd | 6 SemNeT-2.1.0/SemNeT/man/response_analysis.Rd | 40 SemNeT-2.1.0/SemNeT/man/responses2binary.Rd |only SemNeT-2.1.0/SemNeT/man/semantic_network_measures.Rd | 35 SemNeT-2.1.0/SemNeT/man/similarity.Rd | 22 SemNeT-2.1.0/SemNeT/man/simulate_fluency.Rd | 9 SemNeT-2.1.0/SemNeT/man/test.bootSemNeT.Rd | 18 SemNeT-2.1.0/SemNeT/man/tmfg.Rd | 20 SemNeT-2.1.0/SemNeT/src/init.c | 18 SemNeT-2.1.0/SemNeT/src/louvain.c | 5 SemNeT-2.1.0/SemNeT/src/modularity.c | 10 SemNeT-2.1.0/SemNeT/src/xoshiro.c | 6 77 files changed, 8472 insertions(+), 2433 deletions(-)
Title: Lightweight Hardware and GPU Compute Detection
Description: Detects central processing unit topology, process-available cores,
host and container memory, graphics processing unit hardware, and reports
the apparent availability of 'CUDA', 'Metal', 'ROCm',
and 'OpenCL' compute backends, with a read-only shared-library inventory for
the 'CUDA' runtime, 'cuBLAS', 'cuFFT', 'cuSOLVER', 'cuRAND', and optional
'NCCL' libraries. Detection uses operating-system information,
documented platform interfaces, and optional command-line utilities,
without requiring a GPU framework, 'Python', or a vendor software
development kit. Backend interpretation follows the official 'CUDA'
<https://docs.nvidia.com/cuda/cuda-driver-api/>, 'Metal'
<https://developer.apple.com/documentation/metal>, 'ROCm'
<https://rocm.docs.amd.com/>, and 'OpenCL'
<https://registry.khronos.org/OpenCL/> documentation. 'NCCL' version
inspection follows its documented API
<https://docs.nvidia.com/deeplearning/nccl/user-guide/docs/api/comms.html>.
Process-level GPU [...truncated...]
Author: Stefano Cacciatore [aut, cre]
Maintainer: Stefano Cacciatore <tkcaccia@gmail.com>
Diff between gpuinfo versions 0.1.0 dated 2026-09-26 and 0.2.0 dated 2026-10-14
DESCRIPTION | 21 + MD5 | 82 ++++-- NAMESPACE | 14 + NEWS.md |only R/accelerator.R | 8 R/cuda-build.R |only R/cuda-libraries.R |only R/cuda-preflight.R |only R/cuda.R | 447 +++++++++++++++++++++++++--------- R/environment.R | 7 R/gpu.R | 165 +++++++++--- R/gpuinfo-package.R | 15 - R/manifest.R |only R/memory-sampler.R |only R/native.R | 77 ++++- R/nccl.R |only R/sitrep.R | 70 ++++- R/system.R | 376 +++++++++++++++++++++++++--- R/utils.R | 29 ++ README.md | 137 +++++++++- inst/VALIDATION.md | 13 inst/doc/hardware-validation.R | 19 + inst/doc/hardware-validation.Rmd | 96 ++++++- inst/doc/hardware-validation.html | 159 +++++++++--- inst/extdata/validation.csv | 5 man/cpu_info.Rd |only man/cuda_build_info.Rd |only man/cuda_info.Rd |only man/cuda_libraries.Rd |only man/cuda_preflight.Rd |only man/gpu_devices.Rd |only man/gpu_memory_info.Rd |only man/gpu_memory_peak.Rd |only man/gpu_memory_sample.Rd |only man/gpu_sitrep.Rd | 4 man/gpuinfo-package.Rd | 15 - man/hardware_info.Rd | 31 +- man/hardware_manifest.Rd |only man/has_cuda.Rd | 22 - man/nccl_info.Rd |only man/system_memory_info.Rd |only src/gpuinfo.c | 299 ++++++++++++++++++++-- src/init.c | 6 tests/testthat/test-api.R | 8 tests/testthat/test-capabilities.R | 2 tests/testthat/test-cuda-build.R |only tests/testthat/test-cuda-components.R |only tests/testthat/test-cuda-libraries.R |only tests/testthat/test-info.R | 59 ++++ tests/testthat/test-memory-sampler.R |only tests/testthat/test-nccl.R |only tests/testthat/test-system.R |only tools/validate-cuda-hardware.R |only tools/validate-hardware.R | 17 + vignettes/hardware-validation.Rmd | 96 ++++++- 55 files changed, 1892 insertions(+), 407 deletions(-)
Title: Orchestration of Data Pipelines
Description: Framework for creating and orchestrating data pipelines. Organize, orchestrate, and monitor multiple pipelines in a single project. Use tags to decorate functions with scheduling parameters and configuration.
Author: Will Hipson [cre, aut, cph] ,
Ryan Garnett [aut, ctb, cph]
Maintainer: Will Hipson <will.e.hipson@gmail.com>
Diff between maestro versions 1.3.1 dated 2026-09-15 and 1.4.0 dated 2026-10-14
DESCRIPTION | 8 +-- MD5 | 44 ++++++++++------ NAMESPACE | 2 NEWS.md | 8 +++ R/MaestroPipeline.R | 51 +++++++++++++++++++ R/MaestroPipelineList.R | 11 ++++ R/MaestroSchedule.R | 29 ++++++++--- R/metrics.R |only build/vignette.rds |binary inst/doc/maestro-1-quick-start.html | 4 - inst/doc/maestro-3-advanced-scheduling.html | 6 +- inst/doc/maestro-4-directed-acyclic-graphs.html | 20 +++---- inst/doc/maestro-4b-directed-acyclic-graphs.html | 44 ++++++++-------- inst/doc/maestro-5-logging.html | 60 +++++++++++------------ inst/doc/maestro-8-conditionals.html | 36 ++++++------- inst/doc/maestro-9-metrics.R |only inst/doc/maestro-9-metrics.html |only inst/doc/maestro-9-metrics.qmd |only man/MaestroPipeline.Rd | 47 ++++++++++++++++++ man/MaestroPipelineList.Rd | 16 ++++++ man/MaestroSchedule.Rd | 16 ++++++ man/get_metrics.Rd |only man/update_metric.Rd |only tests/testthat/test-metrics.R |only tests/testthat/test-multicore.R | 31 +++++++++++ tests/testthat/test_pipelines_run_metrics |only tests/testthat/test_pipelines_run_rng_warning |only vignettes/maestro-9-metrics.qmd |only 28 files changed, 319 insertions(+), 114 deletions(-)
Title: Use Images in 'ggplot2'
Description: Supports image files and graphic objects to be visualized in
'ggplot2' graphic system. Images can be drawn at data points, used as the
background of a plot, or embedded as a sub-plot, and can be read from local
files or downloaded from remote services such as 'Pokemon', 'PhyloPic', and
emoji and icon collections. An interactive geom is provided for 'HTML'
output.
Author: Guangchuang Yu [aut, cre, cph] ,
Shuangbin Xu [ctb] ,
Yonghe Xia [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggimage versions 0.3.6 dated 2026-09-27 and 0.3.7 dated 2026-10-14
ggimage-0.3.6/ggimage/R/color_image.R |only ggimage-0.3.6/ggimage/R/geom_twitchemote.R |only ggimage-0.3.7/ggimage/DESCRIPTION | 23 ggimage-0.3.7/ggimage/MD5 | 90 ++- ggimage-0.3.7/ggimage/NAMESPACE | 11 ggimage-0.3.7/ggimage/R/draw_key.R | 39 + ggimage-0.3.7/ggimage/R/geom_bgimage.R | 121 ++++- ggimage-0.3.7/ggimage/R/geom_emoji.R | 6 ggimage-0.3.7/ggimage/R/geom_flag.R | 85 +-- ggimage-0.3.7/ggimage/R/geom_icon.R | 5 ggimage-0.3.7/ggimage/R/geom_image.R | 184 ++++++- ggimage-0.3.7/ggimage/R/geom_image_repel.R | 135 ++++- ggimage-0.3.7/ggimage/R/geom_interactive.R | 4 ggimage-0.3.7/ggimage/R/geom_phylopic.R | 176 ++++++- ggimage-0.3.7/ggimage/R/geom_subview.R | 157 ++++++ ggimage-0.3.7/ggimage/R/ggbackground.R | 74 ++- ggimage-0.3.7/ggimage/R/ggpreview.R | 7 ggimage-0.3.7/ggimage/R/image_read2.R | 62 +- ggimage-0.3.7/ggimage/R/theme.R | 5 ggimage-0.3.7/ggimage/R/utilities.R | 59 ++ ggimage-0.3.7/ggimage/build |only ggimage-0.3.7/ggimage/inst/doc |only ggimage-0.3.7/ggimage/man/clear_image_cache.Rd |only ggimage-0.3.7/ggimage/man/draw_key.Rd | 6 ggimage-0.3.7/ggimage/man/geom_bgimage.Rd | 48 + ggimage-0.3.7/ggimage/man/geom_image.Rd | 27 + ggimage-0.3.7/ggimage/man/geom_image_repel.Rd | 43 + ggimage-0.3.7/ggimage/man/geom_subview.Rd | 27 + ggimage-0.3.7/ggimage/man/ggbackground.Rd | 5 ggimage-0.3.7/ggimage/man/ggimage-package.Rd | 4 ggimage-0.3.7/ggimage/tests/testthat/helper-docs.R |only ggimage-0.3.7/ggimage/tests/testthat/helper-grobs.R |only ggimage-0.3.7/ggimage/tests/testthat/test-draw-key.R | 127 +++++ ggimage-0.3.7/ggimage/tests/testthat/test-geom-bgimage.R | 241 +++++++++- ggimage-0.3.7/ggimage/tests/testthat/test-geom-image-aesthetics.R |only ggimage-0.3.7/ggimage/tests/testthat/test-geom-image-alpha.R |only ggimage-0.3.7/ggimage/tests/testthat/test-geom-image-by-height.R |only ggimage-0.3.7/ggimage/tests/testthat/test-geom-image-cache.R | 143 +++++ ggimage-0.3.7/ggimage/tests/testthat/test-geom-image-failures.R |only ggimage-0.3.7/ggimage/tests/testthat/test-geom-image-list-column.R |only ggimage-0.3.7/ggimage/tests/testthat/test-geom-image-repel-cleanup.R |only ggimage-0.3.7/ggimage/tests/testthat/test-geom-image-repel-example.R |only ggimage-0.3.7/ggimage/tests/testthat/test-geom-image-repel-hjust.R |only ggimage-0.3.7/ggimage/tests/testthat/test-geom-image-repel.R | 111 ++++ ggimage-0.3.7/ggimage/tests/testthat/test-geom-interactive.R |only ggimage-0.3.7/ggimage/tests/testthat/test-geom-phylopic.R | 213 ++++++++ ggimage-0.3.7/ggimage/tests/testthat/test-geom-subview-compat.R |only ggimage-0.3.7/ggimage/tests/testthat/test-get-github-files.R |only ggimage-0.3.7/ggimage/tests/testthat/test-ggbackground.R | 99 ++++ ggimage-0.3.7/ggimage/tests/testthat/test-ggpreview.R |only ggimage-0.3.7/ggimage/tests/testthat/test-image-file-readers.R |only ggimage-0.3.7/ggimage/tests/testthat/test-image-read2.R | 132 +++++ ggimage-0.3.7/ggimage/tests/testthat/test-repel-broadphase.R | 59 ++ ggimage-0.3.7/ggimage/tests/testthat/test-theme.R |only ggimage-0.3.7/ggimage/tests/testthat/test-url-validation.R | 188 +++++++ ggimage-0.3.7/ggimage/vignettes |only 56 files changed, 2458 insertions(+), 258 deletions(-)
Title: Effect Stars
Description: Provides functions for the method of effect stars as proposed by Tutz and Schauberger (2013) <doi:10.1080/10618600.2012.701379>. Effect stars can be used to visualize estimates of parameters corresponding to different groups, for example in multinomial logit models. Beside the main function 'effectstars' there exist methods for special objects, for example for 'vglm' objects from the 'VGAM' package.
Author: Gunther Schauberger [aut, cre]
Maintainer: Gunther Schauberger <gunther.schauberger@tum.de>
Diff between EffectStars2 versions 0.1-3 dated 2019-10-22 and 0.1-4 dated 2026-10-14
DESCRIPTION | 16 ++++++++++------ MD5 | 16 ++++++++-------- R/effect.stars.vglm.R | 4 +++- man/effectstars.default.Rd | 16 ++++++++++++---- man/effectstars.vglm.Rd | 3 +-- man/election.Rd | 6 ++++-- man/insolvency.Rd | 6 ++++-- man/plebiscite.Rd | 6 ++++-- man/star.ctrl.Rd | 20 +++++++++++++++----- 9 files changed, 61 insertions(+), 32 deletions(-)
Title: Visualization of Categorical Response Models
Description: Notice: The package EffectStars2 provides a more up-to-date implementation of effect stars! EffectStars provides functions to visualize regression models with categorical response as proposed by Tutz and Schauberger (2013) <doi:10.1080/10618600.2012.701379>. The effects of the variables are plotted with star plots in order to allow for an optical impression of the fitted model.
Author: Gunther Schauberger [aut, cre]
Maintainer: Gunther Schauberger <gunther.schauberger@tum.de>
Diff between EffectStars versions 1.9-1 dated 2019-10-22 and 1.9-2 dated 2026-10-14
DESCRIPTION | 14 +++++++++----- MD5 | 4 ++-- man/alligator.Rd | 2 +- 3 files changed, 12 insertions(+), 8 deletions(-)
Title: The Scaled von Mises-Fisher Distribution
Description: Functions to perform maximum likelihood estimation of and random value simulation from the scaled von Mises-Fisher distribution. The distribution is elliptical symmetric and can be applied to spherical and hyper-spherical data. The reference paper is Scealy J.L. and Wood A.T.A. (2019), <doi:10.1080/01621459.2019.1585249>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between svmf versions 1.0 dated 2026-06-18 and 1.1 dated 2026-10-14
DESCRIPTION | 8 ++-- MD5 | 8 ++-- R/dsvmf.R |only R/svmf.mle.R | 94 ++++++---------------------------------------------- man/dsvmf.Rd |only man/svmf-package.Rd | 4 +- 6 files changed, 23 insertions(+), 91 deletions(-)
Title: Access the 'IBGE' Aggregate Data API from 'R'
Description: 'Tidyverse'-friendly interface to the Brazilian Institute of Geography and Statistics ('IBGE') aggregate data 'API'
<https://servicodados.ibge.gov.br/api/docs/agregados?versao=3>. Query aggregates, variables, localities, periods, and metadata
from surveys and censuses conducted by 'IBGE'.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Allan Quadros [rev] ,
Diana Garcia-Cortes [rev]
Maintainer: Andre Leite <leite@castlab.org>
Diff between ibger versions 0.2.0 dated 2026-07-08 and 0.2.1 dated 2026-10-14
ibger-0.2.0/ibger/inst/doc/api-concepts.R |only ibger-0.2.0/ibger/inst/doc/getting-started.R |only ibger-0.2.0/ibger/inst/doc/ipca-example.R |only ibger-0.2.0/ibger/inst/doc/tutorial.R |only ibger-0.2.1/ibger/DESCRIPTION | 59 ibger-0.2.1/ibger/MD5 | 129 - ibger-0.2.1/ibger/NAMESPACE | 1 ibger-0.2.1/ibger/NEWS.md | 118 + ibger-0.2.1/ibger/R/agregados.R | 129 - ibger-0.2.1/ibger/R/chunking.R | 69 ibger-0.2.1/ibger/R/ibger-package.R | 5 ibger-0.2.1/ibger/R/localidades.R | 55 ibger-0.2.1/ibger/R/metadados.R | 244 +- ibger-0.2.1/ibger/R/periodos.R | 6 ibger-0.2.1/ibger/R/shiny.R | 38 ibger-0.2.1/ibger/R/sidra_url.R | 676 +++--- ibger-0.2.1/ibger/R/subjects.R | 40 ibger-0.2.1/ibger/R/surveys.R | 285 +- ibger-0.2.1/ibger/R/utils.R | 54 ibger-0.2.1/ibger/R/validacao.R | 246 +- ibger-0.2.1/ibger/R/variaveis.R | 24 ibger-0.2.1/ibger/README.md | 131 - ibger-0.2.1/ibger/build/vignette.rds |binary ibger-0.2.1/ibger/inst/doc/api-concepts.Rmd | 567 ++++- ibger-0.2.1/ibger/inst/doc/api-concepts.html | 642 ++++- ibger-0.2.1/ibger/inst/doc/getting-started.Rmd | 991 +++++++- ibger-0.2.1/ibger/inst/doc/getting-started.html | 1114 +++++++--- ibger-0.2.1/ibger/inst/doc/ipca-example.Rmd | 199 + ibger-0.2.1/ibger/inst/doc/ipca-example.html | 222 + ibger-0.2.1/ibger/inst/doc/tutorial.Rmd | 254 +- ibger-0.2.1/ibger/inst/doc/tutorial.html | 191 + ibger-0.2.1/ibger/inst/httptest2 |only ibger-0.2.1/ibger/inst/shiny/explorer/app.R | 83 ibger-0.2.1/ibger/man/fetch_sidra_url.Rd | 10 ibger-0.2.1/ibger/man/ibge_aggregates.Rd | 38 ibger-0.2.1/ibger/man/ibge_clear_cache.Rd | 4 ibger-0.2.1/ibger/man/ibge_explorer.Rd | 12 ibger-0.2.1/ibger/man/ibge_localities.Rd | 13 ibger-0.2.1/ibger/man/ibge_metadata.Rd | 5 ibger-0.2.1/ibger/man/ibge_periods.Rd | 5 ibger-0.2.1/ibger/man/ibge_survey_metadata.Rd | 9 ibger-0.2.1/ibger/man/ibge_survey_periods.Rd | 7 ibger-0.2.1/ibger/man/ibge_surveys.Rd | 8 ibger-0.2.1/ibger/man/ibge_variables.Rd | 14 ibger-0.2.1/ibger/man/ibger-package.Rd | 24 ibger-0.2.1/ibger/man/parse_ibge_value.Rd | 5 ibger-0.2.1/ibger/man/parse_sidra_url.Rd | 10 ibger-0.2.1/ibger/tests/testthat/api |only ibger-0.2.1/ibger/tests/testthat/helper-meta.R |only ibger-0.2.1/ibger/tests/testthat/test-aggregates.R |only ibger-0.2.1/ibger/tests/testthat/test-api.R |only ibger-0.2.1/ibger/tests/testthat/test-chunking.R | 89 ibger-0.2.1/ibger/tests/testthat/test-localities.R |only ibger-0.2.1/ibger/tests/testthat/test-parse-variables.R |only ibger-0.2.1/ibger/tests/testthat/test-sidra-url.R |only ibger-0.2.1/ibger/tests/testthat/test-subjects.R |only ibger-0.2.1/ibger/tests/testthat/test-utils.R |only ibger-0.2.1/ibger/tests/testthat/test-validacao.R |only ibger-0.2.1/ibger/vignettes/api-concepts.Rmd | 567 ++++- ibger-0.2.1/ibger/vignettes/getting-started.Rmd | 991 +++++++- ibger-0.2.1/ibger/vignettes/ipca-example-unnamed-chunk-11-1.png |only ibger-0.2.1/ibger/vignettes/ipca-example-unnamed-chunk-6-1.png |only ibger-0.2.1/ibger/vignettes/ipca-example-unnamed-chunk-7-1.png |only ibger-0.2.1/ibger/vignettes/ipca-example-unnamed-chunk-9-1.png |only ibger-0.2.1/ibger/vignettes/ipca-example.Rmd | 199 + ibger-0.2.1/ibger/vignettes/tutorial-unnamed-chunk-12-1.png |only ibger-0.2.1/ibger/vignettes/tutorial-unnamed-chunk-15-1.png |only ibger-0.2.1/ibger/vignettes/tutorial-unnamed-chunk-17-1.png |only ibger-0.2.1/ibger/vignettes/tutorial-unnamed-chunk-19-1.png |only ibger-0.2.1/ibger/vignettes/tutorial-unnamed-chunk-22-1.png |only ibger-0.2.1/ibger/vignettes/tutorial-unnamed-chunk-25-1.png |only ibger-0.2.1/ibger/vignettes/tutorial-unnamed-chunk-28-1.png |only ibger-0.2.1/ibger/vignettes/tutorial-unnamed-chunk-30-1.png |only ibger-0.2.1/ibger/vignettes/tutorial-unnamed-chunk-32-1.png |only ibger-0.2.1/ibger/vignettes/tutorial-unnamed-chunk-6-1.png |only ibger-0.2.1/ibger/vignettes/tutorial-unnamed-chunk-9-1.png |only ibger-0.2.1/ibger/vignettes/tutorial.Rmd | 254 +- 77 files changed, 6725 insertions(+), 2111 deletions(-)
Title: Functions for Tabular Reporting
Description: Use a grammar for creating and customizing pretty tables.
The following formats are supported: 'HTML', 'PDF', 'Typst', 'RTF',
'Microsoft Word', 'Microsoft PowerPoint', R 'Grid Graphics' and
'patchwork'. 'R Markdown', 'Quarto' and the package 'officer' can be
used to produce the result files. The syntax is the same for the user
regardless of the type of output to be produced. A set of functions
allows the creation, definition of cell arrangement, addition of
headers or footers, formatting and definition of cell content with
text and or images. The package also offers a set of high-level
functions that allow tabular reporting of statistical models and the
creation of complex cross tabulations.
Author: David Gohel [aut, cre],
ArData [cph],
Clementine Jager [ctb],
Eli Daniels [ctb],
Panagiotis Skintzos [aut],
Quentin Fazilleau [ctb],
Maxim Nazarov [ctb],
Titouan Robert [ctb],
Michael Barrowman [ctb],
Atsushi Yasumoto [ctb],
Paul Julian [ctb],
Sean B [...truncated...]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.10.1 dated 2026-09-10 and 0.10.3 dated 2026-10-14
DESCRIPTION | 6 +- MD5 | 30 +++++----- NEWS.md | 20 ++++++ R/as_flextable_rtables.R | 18 ++---- R/as_flextable_tabulator.R | 6 +- R/flextable.R | 2 R/flextable_sizes.R | 97 +++++++++++++++++++++++++++++++-- inst/examples/rmd/captions_example.Rmd | 28 ++++----- inst/examples/rmd/demo.Rmd | 26 ++++---- man/as_flextable.TableTree.Rd | 18 +++--- man/set_caption.Rd | 2 man/tabulator.Rd | 6 +- tests/testthat/rmd/captions.Rmd | 4 - tests/testthat/test-captions-rmd.R | 14 +++- tests/testthat/test-df_printer.R | 2 tests/testthat/test-fit_columns.R | 59 ++++++++++++++++++++ 16 files changed, 255 insertions(+), 83 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: Bindings to 'libcurl' <https://curl.se/libcurl/> for performing fully
configurable HTTP/FTP requests where responses can be processed in memory, on
disk, or streaming via the callback or connection interfaces. Some knowledge
of 'libcurl' is recommended; for a more-user-friendly web client see the
'httr2' package which builds on this package with http specific tools and logic.
Author: Jeroen Ooms [aut, cre] ,
Hadley Wickham [ctb],
Posit Software, PBC [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between curl versions 8.0.0 dated 2026-08-25 and 8.1.0 dated 2026-10-14
DESCRIPTION | 6 +- MD5 | 24 +++++----- NEWS | 5 ++ R/parser.R | 6 -- R/utilities.R | 8 +-- inst/doc/intro.html | 96 +++++++++++++++++++++---------------------- inst/doc/windows.html | 2 src/findport.c | 2 src/form.c | 3 + src/utils.c | 22 ++++++++- tests/testthat/test-parser.R | 5 ++ tests/testthat/test-post.R | 7 ++- tools/winlibs.R | 6 +- 13 files changed, 110 insertions(+), 82 deletions(-)
Title: Integrated Interface of Bayesian Single Index Models using
'nimble'
Description: Provides tools for fitting Bayesian single index models with
flexible choices of priors for both the index and the link function.
The package implements model estimation and posterior inference using
efficient MCMC algorithms built on the 'nimble' framework, allowing
users to specify, extend, and simulate models in a unified and
reproducible manner. The following methods are implemented in the
package: Antoniadis et al. (2004)
<https://www.jstor.org/stable/24307224>, Wang (2009)
<doi:10.1016/j.csda.2008.12.010>, Choi et al. (2011)
<doi:10.1080/10485251003768019>, Dhara et al. (2019)
<doi:10.1214/19-BA1170>, McGee et al. (2023) <doi:10.1111/biom.13569>.
Author: Seowoo Jung [aut, cre],
Eun-kyung Lee [aut]
Maintainer: Seowoo Jung <jsw1347@ewha.ac.kr>
Diff between BayesSIM versions 1.0.4 dated 2026-05-13 and 2.0.0 dated 2026-10-14
BayesSIM-1.0.4/BayesSIM/R/utils.R |only BayesSIM-2.0.0/BayesSIM/DESCRIPTION | 15 BayesSIM-2.0.0/BayesSIM/MD5 | 111 BayesSIM-2.0.0/BayesSIM/NAMESPACE | 81 BayesSIM-2.0.0/BayesSIM/NEWS.md |only BayesSIM-2.0.0/BayesSIM/R/bayesSIM.R | 72 BayesSIM-2.0.0/BayesSIM/R/bsFisher-functions.R | 676 +- BayesSIM-2.0.0/BayesSIM/R/bsFisher-sampler.R | 190 BayesSIM-2.0.0/BayesSIM/R/bsFisher.R | 1149 +-- BayesSIM-2.0.0/BayesSIM/R/bsPolar.R | 727 +- BayesSIM-2.0.0/BayesSIM/R/bsSphere-functions.R | 1124 +-- BayesSIM-2.0.0/BayesSIM/R/bsSphere-sampler.R | 924 +-- BayesSIM-2.0.0/BayesSIM/R/bsSphere.R | 820 +- BayesSIM-2.0.0/BayesSIM/R/bsSpike.R | 803 +- BayesSIM-2.0.0/BayesSIM/R/generics.R | 5009 +++++++++-------- BayesSIM-2.0.0/BayesSIM/R/gpFisher.R | 679 +- BayesSIM-2.0.0/BayesSIM/R/gpPolar-sampler.R | 4 BayesSIM-2.0.0/BayesSIM/R/gpPolar.R | 636 +- BayesSIM-2.0.0/BayesSIM/R/gpPolarTemp.R | 611 +- BayesSIM-2.0.0/BayesSIM/R/gpSphere-functions.R | 8 BayesSIM-2.0.0/BayesSIM/R/gpSphere-sampler.R | 245 BayesSIM-2.0.0/BayesSIM/R/gpSphere-united.R | 997 +-- BayesSIM-2.0.0/BayesSIM/R/gpspike-functions.R | 2 BayesSIM-2.0.0/BayesSIM/R/gpspike-sampler.R | 552 - BayesSIM-2.0.0/BayesSIM/R/gpspike.R | 753 +- BayesSIM-2.0.0/BayesSIM/R/prior-params.R | 9 BayesSIM-2.0.0/BayesSIM/R/utils2.R |only BayesSIM-2.0.0/BayesSIM/README.md |only BayesSIM-2.0.0/BayesSIM/build/partial.rdb |binary BayesSIM-2.0.0/BayesSIM/man/BayesSIM-package.Rd | 8 BayesSIM-2.0.0/BayesSIM/man/BayesSIM.Rd | 24 BayesSIM-2.0.0/BayesSIM/man/GOF.bsim.Rd | 12 BayesSIM-2.0.0/BayesSIM/man/as.data.frame.bsimPred.Rd | 4 BayesSIM-2.0.0/BayesSIM/man/as_bsim.bsimSetup.Rd | 12 BayesSIM-2.0.0/BayesSIM/man/bsFisher.Rd | 36 BayesSIM-2.0.0/BayesSIM/man/bsPolar.Rd | 38 BayesSIM-2.0.0/BayesSIM/man/bsSphere.Rd | 27 BayesSIM-2.0.0/BayesSIM/man/bsSpike.Rd | 30 BayesSIM-2.0.0/BayesSIM/man/coef.bsim.Rd | 24 BayesSIM-2.0.0/BayesSIM/man/compileModelAndMCMC.Rd | 10 BayesSIM-2.0.0/BayesSIM/man/fitted.bsim.Rd | 12 BayesSIM-2.0.0/BayesSIM/man/getFunction.Rd | 30 BayesSIM-2.0.0/BayesSIM/man/getInit.Rd | 8 BayesSIM-2.0.0/BayesSIM/man/getModelDef.Rd | 2 BayesSIM-2.0.0/BayesSIM/man/getVarMonitor.Rd | 2 BayesSIM-2.0.0/BayesSIM/man/getWAIC.Rd |only BayesSIM-2.0.0/BayesSIM/man/gpFisher.Rd | 24 BayesSIM-2.0.0/BayesSIM/man/gpPolar.Rd | 31 BayesSIM-2.0.0/BayesSIM/man/gpSphere.Rd | 29 BayesSIM-2.0.0/BayesSIM/man/gpSpike.Rd | 28 BayesSIM-2.0.0/BayesSIM/man/nimTraceplot.Rd | 16 BayesSIM-2.0.0/BayesSIM/man/plot.bsim.Rd | 18 BayesSIM-2.0.0/BayesSIM/man/predict.bsim.Rd | 34 BayesSIM-2.0.0/BayesSIM/man/residuals.bsim.Rd | 13 BayesSIM-2.0.0/BayesSIM/man/summary.bsim.Rd | 18 BayesSIM-2.0.0/BayesSIM/man/summary.bsimPred.Rd | 4 BayesSIM-2.0.0/BayesSIM/man/summary.bsimSetup.Rd | 8 BayesSIM-2.0.0/BayesSIM/tests/testthat/test-BayesSIM.R | 178 BayesSIM-2.0.0/BayesSIM/tests/testthat/test-generic.R | 89 59 files changed, 9073 insertions(+), 7893 deletions(-)
Title: Genetic Study of Plant Mixtures
Description: Fit linear mixed models dedicated to the genetic study of plant mixtures, such as those based on general and specific mixing abilities (GMA-SMA) as well as direct and social breeding values (DBV-SBV), also known as direct and indirect genetic effects (DGE-IGE). More details in Forst et al (2019, <doi:10.1016/j.fcr.2019.107571>) for GMA-SMA models, and Salomon et al (2026, <doi:10.1093/genetics/iyag177>) for DBV-SBV models. The package also provides functions to optimize experimental designs, simulate data sets and compute interaction indices.
Author: Timothee Flutre [aut, ctb, cre] ,
INRAE [cph, fnd],
Jerome Enjalbert [ctb] ,
Emma Forst [ctb] ,
Maxence Remerand [ctb] ,
Jemay Salomon [ctb]
Maintainer: Timothee Flutre <timothee.flutre@inrae.fr>
Diff between plantmix versions 1.0.3 dated 2026-06-20 and 1.0.4 dated 2026-10-14
DESCRIPTION | 8 MD5 | 77 ++++--- NAMESPACE | 2 NEWS.md | 17 + R/DBV_SBV_crop_mix_simul.R | 165 ++++++++++++++-- R/indices.R | 228 ++++++++++++++++------- R/mixing_ability.R | 6 R/optim_designs_common.R | 151 +++++++++++++++ R/optim_designs_crop_mix.R | 19 + R/optim_designs_var_mix.R | 30 ++- R/plantmix-package.R | 4 R/uncertainty_RY.R | 113 ++++++----- R/uncertainty_RYM.R | 120 ++++++++---- R/utils_linear_algebra.R | 2 R/utils_stat.R | 31 +-- inst/doc/vig1_intro-GMA-SMA.html | 22 +- inst/doc/vig2_GMA-SMA_simul-infer.html | 144 +++++++------- inst/doc/vig3_DBV-SBV_crop-mix_testers.Rmd | 3 inst/doc/vig3_DBV-SBV_crop-mix_testers.html | 264 +++++++++++++-------------- man/LER.Rd | 8 man/RY.Rd | 14 - man/RYM.Rd | 6 man/RYP.Rd | 76 ++++++- man/RYT.Rd | 10 - man/estimRYMRep.Rd | 13 - man/estimRYRep.Rd | 2 man/getDesignBinaryCropMix.Rd | 6 man/getDesignBinaryVarMix.Rd | 11 + man/invvecMixes.Rd | 2 man/plotDesignCropMix.Rd | 3 man/plotDesignVarMix.Rd | 3 man/plotDiallel.Rd | 22 ++ src/TMB/DBV_SBV_crop_mix.hpp | 16 - src/TMB/include/helper.hpp | 2 tests/testthat/test_incomp-balanced-design.R |only tests/testthat/test_indices.R | 89 ++++++++- tests/testthat/test_mixing_ability.R | 16 + tests/testthat/test_uncertainty_RY.R |only tests/testthat/test_uncertainty_RYM.R |only tests/testthat/test_utils_stat.R | 29 ++ vignettes/vig3_DBV-SBV_crop-mix_testers.Rmd | 3 41 files changed, 1215 insertions(+), 522 deletions(-)
Title: Calculate High Resolution Water Balance of Starch Potatoes
Description: Calculates the water balance of starch potatoes from Normalized Distance Vegetation Index (NDVI) images, German Weather Service (DWD) reference evapotranspiration, German Weather Service RADOLAN precipitation data and irrigation information. For more details see Piernicke et al. (2025) <doi:10.3390/rs17183227>.
Author: Thomas Piernicke [aut, cre]
Maintainer: Thomas Piernicke <thomasp@gfz.de>
Diff between WaterBalanceR versions 0.1.21 dated 2026-03-13 and 0.1.22 dated 2026-10-14
DESCRIPTION | 12 MD5 | 18 NEWS.md | 13 R/DownloadET0fromDWD.R | 33 R/DownloadSentinel2.R | 251 +++--- R/calcWB.R | 31 R/calcWBplots.R | 1338 +++++++++++++++++++++++--------- inst/doc/WaterBalanceR_DataSources.html | 10 inst/doc/WaterBalanceR_Workflow.html | 16 man/DownloadSentinel2.Rd | 5 10 files changed, 1243 insertions(+), 484 deletions(-)
Title: Multiscale Systematic Conservation Planning Across Nested H3
Grids
Description: Provides tools for multiscale systematic conservation planning
using the H3 hierarchical hexagonal grid system (Uber Technologies (2024)
<https://h3geo.org>) and the 'prioritizr' package (Hanson et al. (2025)
<doi:10.1111/cobi.14376>). Supports the definition and solution of
conservation problems across nested H3 resolutions with resolution-specific
features, costs, and management attributes, including cross-scale
connectivity penalties derived from parent-child relationships. Includes
a multiscale minimum-set objective that allows planning units at different
resolutions to contribute toward feature representation targets while
accounting for overlapping costs and feature amounts across nested planning
units. Also includes utilities to evaluate solutions using
multiscale-aware diagnostics and to post-process optimization outputs
into alternative area-targeted conservation scenarios.
Author: Pablo Merlo [aut, cre] ,
Oisin Callery [aut] ,
Carlos Tighe [ctb],
Anthony Grehan [ctb]
Maintainer: Pablo Merlo <pablo.merlo@universityofgalway.ie>
Diff between MultiscaleSCP versions 0.1.1 dated 2026-03-30 and 0.2.0 dated 2026-10-14
DESCRIPTION | 30 MD5 | 78 - NAMESPACE | 11 NEWS.md | 20 R/RcppExports.R |only R/add-multiscale-min-set-objective.R |only R/add-multiscale-min-set.R |only R/add-multiscale-relative-targets.R |only R/build-multiscale-atoms.R |only R/build-multiscale-objective-data.R |only R/deduplicate_retune.R | 292 ++-- R/eval-multiscale-atom-solution.R |only R/evaluation.R | 1524 +++++++++++------------ R/globals.R | 10 R/h3_hierarchy.R | 421 +++--- R/load-multiscale-feature.R |only R/multiscale-atom-internal.R |only R/multiscale-backend.R |only R/multiscale_connect_matrix.R | 160 +- R/multiscale_connectivity.R | 490 +++---- R/scoring.R | 920 ++++++------- R/selection_stratified.R | 1129 ++++++++--------- R/utils.R | 58 build/vignette.rds |binary inst/doc/MultiscaleSCP_workflow_vignette.R | 388 +++-- inst/doc/MultiscaleSCP_workflow_vignette.Rmd | 713 ++++++---- inst/doc/MultiscaleSCP_workflow_vignette.html | 1714 ++++++++++++++------------ man/add_multiscale_connectivity_penalties.Rd | 35 man/add_multiscale_min_set.Rd |only man/add_multiscale_min_set_objective.Rd |only man/add_multiscale_relative_targets.Rd |only man/build_crossscale_index.Rd | 11 man/build_h3_maps.Rd | 29 man/build_multiscale_atoms.Rd |only man/build_multiscale_connectivity_matrix.Rd | 14 man/build_multiscale_feature_atoms.Rd |only man/build_multiscale_objective_data.Rd |only man/deduplicate_h3_selections.Rd | 2 man/eval_exact_raster_coverage.Rd | 9 man/eval_geom_feature_coverage.Rd | 9 man/eval_multiscale_atom_solution.Rd |only man/load_multiscale_feature.Rd |only man/multiscale_feature_cols.Rd |only src |only tests |only vignettes/MultiscaleSCP_workflow_vignette.Rmd | 713 ++++++---- 46 files changed, 4696 insertions(+), 4084 deletions(-)
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for (1) data handling (e.g., grand-mean and group-mean centering, coding variables and reverse coding items, scale and cluster scores, reading and writing Excel and SPSS files), (2) descriptive statistics (e.g., frequency table, cross tabulation, effect size measures), (3) missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), (4) multilevel data (e.g., multilevel descriptive statistics, within-group and between-group correlation matrix, multilevel confirmatory factor analysis, level-specific fit indices, cross-level measurement equivalence evaluation, multilevel composite reliability, and multilevel R-squared measures), (5) item analysis (e.g., confirmatory factor analysis, coefficient alpha and omega, between-group and longitudinal measurement equivalence evaluation), (6) statistical analysis (e.g., bootstrap confidence intervals, collinearity and resid [...truncated...]
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.8.3 dated 2026-08-02 and 0.8.4 dated 2026-10-14
DESCRIPTION | 8 MD5 | 494 +++---- NAMESPACE | 20 NEWS.md | 301 ++-- R/aov.b.R | 160 +- R/aov.w.R | 288 ++-- R/blimp.R | 18 R/blimp.bayes.R | 16 R/blimp.plot.R | 24 R/blimp.print.R | 28 R/blimp.run.R | 6 R/blimp.update.R | 18 R/boot.bs.R | 16 R/center.R | 129 - R/check.collin.R | 26 R/check.outlier.R | 306 +++- R/check.resid.R | 676 ++------- R/chr.color.R | 10 R/chr.grep.R | 14 R/chr.gsub.R | 10 R/chr.omit.R | 10 R/chr.trim.R | 12 R/chr.trunc.R | 21 R/ci.cor.R | 534 +++---- R/ci.mean.R | 629 ++++----- R/ci.mean.diff.R | 617 ++++---- R/ci.mean.w.R | 57 R/ci.prop.R | 442 +++--- R/ci.prop.diff.R | 432 +++--- R/ci.var.R | 575 ++++---- R/cluster.rwg.R | 46 R/cluster.scores.R | 57 R/coding.R | 51 R/coeff.robust.R | 14 R/coeff.std.R | 12 R/cohens.d.R | 459 +++--- R/cor.matrix.R | 153 +- R/crosstab.R | 47 R/descript.R | 95 - R/df.check.R | 21 R/df.duplicated.R | 25 R/df.head.R | 32 R/df.long.R | 24 R/df.merge.R | 10 R/df.move.R | 10 R/df.rbind.R | 2 R/df.rename.R | 19 R/df.sort.R | 10 R/df.subset.R | 8 R/difftest.chibarsq.R | 17 R/dominance.R | 22 R/dominance.manual.R | 21 R/effsize.R | 52 R/freq.R | 37 R/indirect.R | 29 R/item.alpha.R | 36 R/item.cfa.R | 78 - R/item.dfi.R | 24 R/item.distract.R | 41 R/item.invar.R | 121 - R/item.noninvar.R | 26 R/item.omega.R | 37 R/item.reverse.R | 51 R/item.scores.R | 30 R/item.stats.R | 80 - R/lagged.R | 37 R/libraries.R | 8 R/modcomp.R | 14 R/mplus.R | 34 R/mplus.bayes.R | 16 R/mplus.lca.R | 59 R/mplus.lca.summa.R | 16 R/mplus.plot.R | 56 R/mplus.print.R | 230 +-- R/mplus.run.R | 8 R/mplus.update.R | 20 R/multilevel.alpha.R | 48 R/multilevel.cfa.R | 80 - R/multilevel.cor.R | 162 +- R/multilevel.descript.R | 88 - R/multilevel.fit.R | 28 R/multilevel.icc.R | 48 R/multilevel.indirect.R | 14 R/multilevel.invar.R | 99 - R/multilevel.omega.R | 44 R/multilevel.r2.R | 62 R/multilevel.r2.manual.R | 55 R/na.as.R | 48 R/na.auxiliary.R | 35 R/na.coverage.R | 42 R/na.descript.R | 51 R/na.indicator.R | 30 R/na.pattern.R | 148 -- R/na.prop.R | 28 R/na.satcor.R | 15 R/na.test.R | 41 R/plot.misty.object.R | 3048 ++++++++++++++++++++++++++++++-------------- R/print.misty.object.R | 1977 ++++++++++++++++++++-------- R/read.data.R | 10 R/read.dta.R | 10 R/read.mplus.R | 16 R/read.sav.R | 10 R/read.xlsx.R | 10 R/rec.R | 53 R/restart.R | 4 R/robust.lmer.R | 16 R/script.copy.R | 6 R/script.new.R | 6 R/script.open.R | 22 R/setsource.R | 6 R/sim.lavaan.R | 10 R/size.mean.R | 54 R/skewness.R | 62 R/summa.R | 20 R/test.bm.R |only R/test.homo.R |only R/test.levene.R | 134 + R/test.linear.R |only R/test.norm.R |only R/test.t.R | 551 ++++--- R/test.welch.R | 264 ++- R/test.z.R | 516 ++++--- R/uniq.R | 52 R/utils.R | 1431 ++++++++++++++++++-- R/write.result.R | 622 ++++++-- man/aov.b.Rd | 69 man/aov.w.Rd | 88 - man/blimp.Rd | 2 man/blimp.bayes.Rd | 6 man/blimp.plot.Rd | 2 man/blimp.print.Rd | 2 man/blimp.run.Rd | 6 man/blimp.update.Rd | 2 man/boot.bs.Rd | 4 man/center.Rd | 68 man/check.collin.Rd | 4 man/check.outlier.Rd | 180 ++ man/check.resid.Rd | 221 +-- man/chr.color.Rd | 2 man/chr.grep.Rd | 2 man/chr.gsub.Rd | 4 man/chr.omit.Rd | 4 man/chr.trim.Rd | 4 man/chr.trunc.Rd | 2 man/ci.cor.Rd | 114 - man/ci.mean.Rd | 126 - man/ci.mean.diff.Rd | 127 - man/ci.mean.w.Rd | 6 man/ci.prop.Rd | 120 - man/ci.prop.diff.Rd | 85 - man/ci.var.Rd | 115 - man/clear.Rd | 2 man/cluster.rwg.Rd | 4 man/cluster.scores.Rd | 6 man/coding.Rd | 6 man/coeff.robust.Rd | 8 man/coeff.std.Rd | 4 man/cohens.d.Rd | 182 +- man/cor.matrix.Rd | 82 - man/crosstab.Rd | 6 man/data.items.Rd | 2 man/descript.Rd | 42 man/df.check.Rd | 4 man/df.duplicated.Rd | 4 man/df.head.Rd | 2 man/df.long.Rd | 2 man/df.merge.Rd | 4 man/df.move.Rd | 4 man/df.rbind.Rd | 4 man/df.rename.Rd | 8 man/df.sort.Rd | 4 man/df.subset.Rd | 4 man/difftest.chibarsq.Rd | 8 man/dominance.Rd | 6 man/dominance.manual.Rd | 6 man/effsize.Rd | 15 man/freq.Rd | 4 man/indirect.Rd | 6 man/item.alpha.Rd | 6 man/item.cfa.Rd | 14 man/item.dfi.Rd | 8 man/item.distract.Rd | 9 man/item.invar.Rd | 14 man/item.noninvar.Rd | 6 man/item.omega.Rd | 4 man/item.reverse.Rd | 6 man/item.scores.Rd | 4 man/item.stats.Rd | 8 man/lagged.Rd | 8 man/libraries.Rd | 4 man/modcomp.Rd | 2 man/mplus.Rd | 2 man/mplus.bayes.Rd | 2 man/mplus.lca.Rd | 8 man/mplus.lca.summa.Rd | 4 man/mplus.plot.Rd | 2 man/mplus.print.Rd | 11 man/mplus.run.Rd | 4 man/mplus.update.Rd | 2 man/multilevel.alpha.Rd | 6 man/multilevel.cfa.Rd | 16 man/multilevel.cor.Rd | 83 + man/multilevel.descript.Rd | 8 man/multilevel.fit.Rd | 6 man/multilevel.icc.Rd | 6 man/multilevel.indirect.Rd | 4 man/multilevel.invar.Rd | 14 man/multilevel.omega.Rd | 6 man/multilevel.r2.Rd | 42 man/multilevel.r2.manual.Rd | 34 man/na.as.Rd | 4 man/na.auxiliary.Rd | 4 man/na.coverage.Rd | 6 man/na.descript.Rd | 6 man/na.indicator.Rd | 4 man/na.pattern.Rd | 83 - man/na.prop.Rd | 4 man/na.satcor.Rd | 2 man/na.test.Rd | 8 man/plot.misty.object.Rd | 1050 +++++++++------ man/print.misty.object.Rd | 37 man/read.data.Rd | 2 man/read.dta.Rd | 4 man/read.mplus.Rd | 4 man/read.sav.Rd | 4 man/read.xlsx.Rd | 4 man/rec.Rd | 6 man/restart.Rd | 4 man/robust.lmer.Rd | 4 man/script.copy.Rd | 4 man/script.new.Rd | 4 man/script.open.Rd | 4 man/setsource.Rd | 4 man/sim.lavaan.Rd | 2 man/size.mean.Rd | 4 man/skewness.Rd | 10 man/summa.Rd | 2 man/test.bm.Rd |only man/test.homo.Rd |only man/test.levene.Rd | 37 man/test.linear.Rd |only man/test.norm.Rd |only man/test.t.Rd | 155 +- man/test.welch.Rd | 71 - man/test.z.Rd | 116 - man/uniq.Rd | 4 man/write.data.Rd | 2 man/write.dta.Rd | 4 man/write.mplus.Rd | 4 man/write.result.Rd | 53 man/write.sav.Rd | 4 man/write.xlsx.Rd | 4 252 files changed, 12664 insertions(+), 9479 deletions(-)
Title: Simple Git Client for R
Description: Simple git client for R based on 'libgit2' <https://libgit2.org> with
support for SSH and HTTPS remotes. All functions in 'gert' use basic R data
types (such as vectors and data-frames) for their arguments and return values.
User credentials are shared with command line 'git' through the git-credential
store and ssh keys stored on disk or ssh-agent.
Author: Jeroen Ooms [aut, cre] ,
Maelle Salmon [aut] ,
Jennifer Bryan [ctb]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between gert versions 2.4.1 dated 2026-08-19 and 2.5.0 dated 2026-10-14
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 5 +++++ configure | 10 ++++++++-- inst/doc/gert.html | 29 +++++++++++++++-------------- man/gert-package.Rd | 1 + src/clone.c | 16 ++++++++++------ src/utils.c | 22 ++++++++++++++++++++++ src/utils.h | 1 + src/version.c | 12 ++++++++++-- 10 files changed, 84 insertions(+), 36 deletions(-)
Title: OLS, Moderated, Logistic, and Count Regressions Made Simple
Description: Provides SPSS- and SAS-like output for least squares multiple regression,
logistic regression, and count variable regressions. Detailed output is also provided for
OLS moderated regression, interaction plots, and Johnson-Neyman
regions of significance. The output includes standardized
coefficients, partial and semi-partial correlations, collinearity diagnostics,
plots of residuals, and detailed information about simple slopes for interactions.
The output for some functions includes Bayes Factors and, if requested,
regression coefficients from Bayesian Markov Chain Monte Carlo analyses.
There are numerous options for model plots.
The REGIONS_OF_SIGNIFICANCE function also provides
Johnson-Neyman regions of significance and plots of interactions for both lm
and lme models. There is also a function for partial and semipartial
correlations and a function for conducting Cohen's
set correlation analyses.
Author: Brian P. O'Connor [aut, cre]
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between SIMPLE.REGRESSION versions 0.3.1 dated 2026-01-21 and 0.3.4 dated 2026-10-14
DESCRIPTION | 8 +- MD5 | 18 +++--- R/COUNT_REGRESSION.R | 7 +- R/LOGISTIC_REGRESSION.R | 7 +- R/MODERATED_REGRESSION.R | 5 + R/OLS_REGRESSION.R | 7 +- R/utilities_boc.R | 134 +++++++++++++++++++++------------------------ man/COUNT_REGRESSION.Rd | 15 +---- man/LOGISTIC_REGRESSION.Rd | 15 +---- man/OLS_REGRESSION.Rd | 6 +- 10 files changed, 104 insertions(+), 118 deletions(-)
More information about SIMPLE.REGRESSION at CRAN
Permanent link
Title: Download Insee French Institute of Statistics Open Data
Description: A wrapper for the French Institute of Statistics (Insee) API
Melodi <https://catalogue-donnees.insee.fr>. Download, search, filter data
and metadata from open data statistical public datasets,
in french or in english.
Author: Cedric Bobinec [aut, cre],
Christophe Goudeau [aut],
Institut national de la statistique et des etudes economiques [cph]
Maintainer: Cedric Bobinec <cedric.bobinec@insee.fr>
Diff between melodi versions 1.1.2 dated 2026-08-28 and 1.2.0 dated 2026-10-14
DESCRIPTION | 6 - MD5 | 29 ++++----- NEWS.md | 6 + R/get_all_data.R | 9 +- R/get_catalog.R | 7 +- R/get_data.R | 18 ++++- R/get_file.R | 48 +++++++++++++-- R/get_metadata.R | 6 + R/get_range.R | 6 + R/get_range_geo.R | 6 + README.md | 3 man/get_file.Rd | 6 + tests/testthat/_vcr/get_file_deces_preserve_filename.yml |only tests/testthat/test-get_catalog.R | 18 ++++- tests/testthat/test-get_data.R | 13 ++-- tests/testthat/test-get_file.R | 25 +++++++ 16 files changed, 159 insertions(+), 47 deletions(-)
Title: Online Changepoint Detection in Univariate and Multivariate Data
Streams
Description: Provides high-performance online changepoint detection in univariate and multivariate data
streams. Implements efficient 'C++' backends for the 'focus', 'md-focus' and 'np-focus'
algorithms, with an 'R' interface for real-time monitoring and offline analysis.
The package bundles code from 'Qhull' <http://www.qhull.org/>, by C. B. Barber and
The Geometry Center. See 'inst/COPYRIGHTS' for details.
Author: Gaetano Romano [aut, cre, trl],
Kes Ward [aut],
Yuntang Fan [aut],
Guillem Rigaill [aut],
Vincent Runge [aut],
Idris A. Eckley [aut],
Paul Fearnhead [aut],
C. B. Barber [ctb, cph] ,
The Geometry Center [cph]
Maintainer: Gaetano Romano <g.romano@lancaster.ac.uk>
Diff between focus versions 0.1.10 dated 2026-09-16 and 0.1.11 dated 2026-10-14
DESCRIPTION | 11 MD5 | 48 +- NAMESPACE | 10 R/RcppExports.R | 103 +--- R/detector.R |only R/methods.R | 219 +++++++++- inst/COPYRIGHTS/MODIFIED.txt | 20 man/detector_candidates.Rd | 19 man/detector_cands_len.Rd | 19 man/detector_create.Rd | 8 man/detector_info_n.Rd | 19 man/detector_info_sn.Rd | 20 man/focus-methods.Rd | 83 +++- man/focus-package.Rd | 113 +++-- man/focus_offline.Rd | 3 man/generate_projection_indexes.Rd | 23 - src/ARpInfo.h | 39 - src/CostsArp.h | 2 src/RcppExports.cpp | 2 src/focus_ARp.cpp | 766 +++++++++---------------------------- src/focus_rcpp_module.cpp | 116 +---- src/libqhull_r/poly_r.c | 2 src/libqhull_r/qset_r.c | 32 - src/libqhull_r/qset_r.h | 53 +- tests/testthat/test-generic.R | 118 +++-- tests/testthat/test-methods.R |only 26 files changed, 899 insertions(+), 949 deletions(-)
Title: Tidy Integration of Large Language Models
Description: A tidy interface for integrating large language model (LLM) APIs such as 'Claude', 'OpenAI', 'Gemini', 'Mistral', and local models via 'Ollama' into R workflows. The package supports text, image, audio, video, and document interactions; a unified media interface for attaching inline files or uploading to provider file stores; batch request APIs for cost-efficient large-scale processing; and a pipeline-oriented interface for seamless integration into data workflows. Web services are available at <https://www.anthropic.com>, <https://openai.com>, <https://aistudio.google.com/>, <https://mistral.ai/> and <https://ollama.com>.
Author: Eduard Bruell [aut, cre],
Jia Zhang [ctb]
Maintainer: Eduard Bruell <eduard.bruell@zew.de>
Diff between tidyllm versions 0.7.0 dated 2026-10-05 and 0.7.1 dated 2026-10-14
DESCRIPTION | 13 - MD5 | 53 ++-- NAMESPACE | 4 NEWS.md | 107 ++++++++ R/APIProvider.R | 2 R/api_claude.R | 8 R/api_claude_cli.R | 346 ++-------------------------- R/api_codex_cli.R |only R/api_ellmer.R | 2 R/api_gemini.R | 55 +++- R/api_mistral.R | 68 +++-- R/api_vibe_cli.R |only R/cli_process.R |only R/llm_verbs.R | 6 R/parallel_chat.R | 5 R/perform_api_requests.R | 22 + R/utilites.R | 43 +++ README.md | 27 +- inst/doc/tidyllm.Rmd | 12 inst/doc/tidyllm.html | 50 ++-- man/claude_cli_chat.Rd | 22 - man/codex_cli.Rd |only man/codex_cli_chat.Rd |only man/gemini_chat.Rd | 15 - man/mistral_chat.Rd | 2 man/send_gemini_batch.Rd | 10 man/send_mistral_batch.Rd | 3 man/vibe_cli.Rd |only man/vibe_cli_chat.Rd |only tests/testthat/test_provider_capabilities.R | 12 vignettes/tidyllm.Rmd | 12 31 files changed, 454 insertions(+), 445 deletions(-)
Title: ADaM Test Data for the 'Pharmaverse' Family of Packages
Description: A set of Analysis Data Model (ADaM) datasets constructed
using the Study Data Tabulation Model (SDTM) datasets contained in the
'pharmaversesdtm' package and the template scripts from the 'admiral'
family of packages. ADaM dataset specifications are described in the
CDISC ADaM implementation guide, accessible by creating a free account
on <https://www.cdisc.org/>.
Author: Fanny Gautier [aut, cre] ,
Stefan Bundfuss [aut] ,
Edoardo Mancini [aut] ,
Lina Patil [aut],
Gerardo Jose Rodriguez [aut] ,
Vladyslav Shuliar [aut] ,
Cytel Inc. [cph, fnd],
F. Hoffmann-La Roche AG [cph, fnd],
GlaxoSmithKline LLC [cph, fnd]
Maintainer: Fanny Gautier <fanny.gautier@cytel.com>
Diff between pharmaverseadam versions 1.3.0 dated 2026-02-20 and 1.4.0 dated 2026-10-14
DESCRIPTION | 14 MD5 | 101 +++--- NEWS.md | 30 + R/adlb_neuro.R |only R/adrs_onco.R | 3 R/adsl.R | 4 R/adsl_vaccine.R | 4 R/adtr_onco.R | 3 R/advfq_ophtha.R | 100 +++++ data/adab.rda |binary data/adae.rda |binary data/adapet_neuro.rda |binary data/adbcva_ophtha.rda |binary data/adce_vaccine.rda |binary data/adcm.rda |binary data/adcoeq_metabolic.rda |binary data/adeg.rda |binary data/adex.rda |binary data/adface_vaccine.rda |binary data/adis_vaccine.rda |binary data/adlb.rda |binary data/adlb_metabolic.rda |binary data/adlb_neuro.rda |only data/adlbhy.rda |binary data/admh.rda |binary data/adnv_neuro.rda |binary data/adoe_ophtha.rda |binary data/adpc.rda |binary data/adpp.rda |binary data/adppk.rda |binary data/adrs_onco.rda |binary data/adsl.rda |binary data/adsl_vaccine.rda |binary data/adtpet_neuro.rda |binary data/adtr_onco.rda |binary data/adtte_onco.rda |binary data/advfq_ophtha.rda |binary data/advs.rda |binary data/advs_metabolic.rda |binary data/advs_peds.rda |binary inst/WORDLIST | 43 ++ inst/extdata/adams-specs.json | 684 +++++++++++++++++++++++++++++++++++++---- inst/extdata/adams-specs.xlsx |binary man/adlb_neuro.Rd |only man/adrs_onco.Rd | 3 man/adsl.Rd | 4 man/adsl_vaccine.Rd | 4 man/adtr_onco.Rd | 3 man/advfq_ophtha.Rd | 100 +++++ man/figures/gsk_logo.png |binary man/figures/logo.png |binary man/figures/roche_logo.png |binary man/pharmaverseadam-package.Rd | 1 53 files changed, 942 insertions(+), 159 deletions(-)
More information about pharmaverseadam at CRAN
Permanent link
Title: Converts 'NONMEM' Models to 'rxode2'
Description: 'NONMEM' has been a tool for running nonlinear mixed
effects models since the 80s and is still used today (Bauer 2019
<doi:10.1002/psp4.12404>). This tool allows you to convert
'NONMEM' models to 'rxode2' (Wang, Hallow and James (2016)
<doi:10.1002/psp4.12052>) and with simple models 'nlmixr2' syntax
(Fidler et al (2019) <doi:10.1002/psp4.12445>). The 'nlmixr2'
syntax requires the residual specification to be included and it
is not always translated. If available, the 'rxode2' model will
read in the 'NONMEM' data and compare the simulation for the
population model ('PRED') individual model ('IPRED') and residual
model ('IWRES') to immediately show how well the translation is
performing. This saves the model development time for people who are
creating an 'rxode2' model manually. Additionally, this package reads
in all the information to allow simulation with uncertainty (that is the
number of observations, the number of subjects, and the covariance
matrix) with a 'rx [...truncated...]
Author: Matthew Fidler [aut, cre] ,
Philip Delff [ctb],
Gabriel Staples [ctb]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nonmem2rx versions 0.1.11 dated 2026-09-22 and 0.1.12 dated 2026-10-14
DESCRIPTION | 12 MD5 | 145 NEWS.md | 138 R/abbrev.R | 36 R/buildParser.R | 23 R/ext.R | 3 R/grd.R | 3 R/linCmt.R | 13 R/lst.R | 21 R/nminfo.R | 12 R/nmtab.R | 45 R/nonmem2rx.R | 40 R/omega.R | 70 R/readCov.R | 11 R/rxSolve.R | 59 R/solveNonmem.R |only R/validate.R | 588 + R/xml.R | 31 inst/abbrec.g | 2 inst/abbrev.g | 15 inst/data.g | 2 inst/doc/import-nonmem.html | 1067 +- inst/input.g | 2 inst/model.g | 2 inst/mods/multest |only inst/omega.g | 2 inst/stress |only inst/sub.g | 2 inst/tab.g | 12 inst/theta.g | 2 src/abbrec.c | 21 src/abbrec.g.d_parser.h | 1257 +-- src/abbrev.c | 9 src/abbrev.g.d_parser.h |10699 +++++++++++++++--------------- src/data.g.d_parser.h | 1122 +-- src/input.g.d_parser.h | 293 src/lst.c | 2 src/model.g.d_parser.h | 378 - src/omega.c | 2 src/omega.g.d_parser.h | 1285 +-- src/sub.g.d_parser.h | 101 src/tab.c | 10 src/tab.g.d_parser.h | 4795 ++++++++----- src/theta.g.d_parser.h | 1186 +-- tests/testthat.R | 10 tests/testthat/test-abbrev.R | 26 tests/testthat/test-advan5.R | 30 tests/testthat/test-dv-modeled-dur.R |only tests/testthat/test-linCmt.R | 68 tests/testthat/test-multiple-est.R |only tests/testthat/test-omega.R | 31 tests/testthat/test-rxsolve.R | 10 tests/testthat/test-solveNonmem.R |only tests/testthat/test-stress.R |only tests/testthat/test-tab.R | 218 tests/testthat/test-theta.R | 4 tests/testthat/test-undefined-theta-eta.R |only tests/testthat/test-validate-align.R |only 58 files changed, 12958 insertions(+), 10957 deletions(-)
Title: Many Ways to Make, Manipulate, and Modify Myriad Networks
Description: Many tools for making, manipulating, and modifying many different types of networks.
All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
on directed, multiplex, multimodal, signed, and other networks.
The package includes functions for importing and exporting, creating and generating networks,
modifying networks and node and tie attributes,
and describing networks with sensible defaults.
Author: James Hollway [cre, aut, ctb] ,
Tomas Diviak [ctb],
Henrique Sposito [ctb] ,
Christian Steglich [ctb],
Alvaro Uzaheta [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manynet versions 2.3.4 dated 2026-09-10 and 2.4.0 dated 2026-10-14
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Title: Multivariate Exploratory Data Analysis and Data Mining
Description: Exploratory data analysis methods to summarize, visualize and describe datasets. The main principal component methods are available, those with the largest potential in terms of applications: principal component analysis (PCA) when variables are quantitative, correspondence analysis (CA) and multiple correspondence analysis (MCA) when variables are categorical, Multiple Factor Analysis when variables are structured in groups, etc. and hierarchical cluster analysis. F. Husson, S. Le and J. Pages (2017).
Author: Francois Husson [aut, cre] ,
Julie Josse [aut],
Sebastien Le [aut],
Jeremy Mazet [aut]
Maintainer: Francois Husson <francois.husson@institut-agro.fr>
Diff between FactoMineR versions 2.17 dated 2026-09-08 and 2.18 dated 2026-10-14
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/HCPC.R | 5 ++--- R/MCA.R | 3 +-- build/vignette.rds |binary inst/doc/clustering.html | 18 +++++++++++------- vignettes/FactoMineR.html | 18 +++++++++++------- 7 files changed, 34 insertions(+), 28 deletions(-)
Title: General Purpose Client for 'ERDDAP™' Servers
Description: General purpose R client for 'ERDDAP™' servers. Includes
functions to search for 'datasets', get summary information on
'datasets', and fetch 'datasets', in either 'csv' or 'netCDF' format.
'ERDDAP™' information:
<https://upwell.pfeg.noaa.gov/erddap/information.html>.
Author: Scott Chamberlain [aut],
Ben Tupper [ctb],
Salvador Jesus Fernandez Bejarano [ctb],
Roy Mendelssohn [cre, ctb]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddap versions 1.3.0 dated 2026-07-02 and 1.3.1 dated 2026-10-14
DESCRIPTION | 18 +++++----- MD5 | 48 ++++++++++++++------------- NAMESPACE | 34 ++++++++++++------- NEWS.md | 9 +++++ R/convert_time.R | 16 +++++---- R/convert_units.R | 16 +++++---- R/fipscounty.R | 16 +++++---- R/global_search.R | 2 - R/grid.R | 35 ++++++++++++-------- R/info.R | 10 ++--- R/keywords.R | 16 +++++---- R/servers.R | 16 +++++---- R/table.R | 36 ++++++++++++-------- R/version.R | 16 +++++---- R/zzz.r | 19 +++++----- inst/agentic-skills |only inst/doc/Using_rerddap.R | 22 ++++++------ inst/doc/Using_rerddap.Rmd | 26 ++++++++------ inst/doc/Using_rerddap.html | 77 ++++++++++++++++++++++---------------------- man/disk.Rd | 4 +- man/eurl.Rd | 4 +- man/global_search.Rd | 2 - man/griddap.Rd | 12 +++--- vignettes/Using_rerddap.Rmd | 26 ++++++++------ vignettes/maxslp.png |binary vignettes/mean_density.png |only 26 files changed, 266 insertions(+), 214 deletions(-)
Title: Statistical Power, Sample Size, and Detectable Effect
Calculations
Description: Flexible and comprehensive functions for statistical power, minimum required
sample size, and minimum detectable effect calculations across a wide range of
commonly used hypothesis tests in psychological, biomedical, and social sciences.
Author: Metin Bulus [aut, cre, cph] ,
Sebastian Jentschke [aut, cph]
Maintainer: Metin Bulus <bulusmetin@gmail.com>
Diff between pwrss versions 1.3.1 dated 2026-09-29 and 1.3.3 dated 2026-10-14
pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-13-1.png |only pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-14-1.png |only pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-15-1.png |only pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-18-1.png |only pwrss-1.3.1/pwrss/man/figures/README-unnamed-chunk-9-1.png |only pwrss-1.3.3/pwrss/DESCRIPTION | 8 pwrss-1.3.3/pwrss/MD5 | 39 +-- pwrss-1.3.3/pwrss/NEWS.md | 128 ++++++------ pwrss-1.3.3/pwrss/R/generic.lp.test.R | 8 pwrss-1.3.3/pwrss/R/helper.R | 19 - pwrss-1.3.3/pwrss/R/lambdap.R | 87 +++----- pwrss-1.3.3/pwrss/inst/CITATION | 21 - pwrss-1.3.3/pwrss/inst/doc/examples.R | 5 pwrss-1.3.3/pwrss/inst/doc/examples.Rmd | 21 + pwrss-1.3.3/pwrss/inst/doc/examples.html | 58 ++++- pwrss-1.3.3/pwrss/man/lambdap.Rd | 19 + pwrss-1.3.3/pwrss/man/power.lp.test.Rd | 8 pwrss-1.3.3/pwrss/tests/lambdap_CI.rds |only pwrss-1.3.3/pwrss/tests/testthat/test-generic.lp.test.R | 2 pwrss-1.3.3/pwrss/tests/testthat/test-helper.R | 16 - pwrss-1.3.3/pwrss/tests/testthat/test-lambdap.R | 70 ++++++ pwrss-1.3.3/pwrss/tests/testthat/test-plots.R | 22 +- pwrss-1.3.3/pwrss/vignettes/examples.Rmd | 21 + pwrss-1.3.3/pwrss/vignettes/otherrefs.bib |only 24 files changed, 347 insertions(+), 205 deletions(-)
Title: Getting Bibliographic Records from 'OpenAlex' Database Using
'DSL' API
Description: A set of tools to extract bibliographic content from
'OpenAlex' database using API <https://help.openalex.org/>.
Author: Massimo Aria [aut, cre, cph] ,
Corrado Cuccurullo [ctb] ,
Trang Le [aut] ,
June Choe [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between openalexR versions 3.1.1 dated 2026-10-09 and 3.1.2 dated 2026-10-14
DESCRIPTION | 6 ++--- MD5 | 16 +++++++------- NEWS.md | 10 ++++++++ R/oa2df.R | 16 +++++++++++--- README.md | 39 +++++++++++++++++++--------------- data/concept_abbrev.rda |binary data/countrycode.rda |binary data/oa2df_coverage.rda |binary tests/testthat/test-oa2df.R | 50 ++++++++++++++++++++++++++++++++++++-------- 9 files changed, 98 insertions(+), 39 deletions(-)
Title: Nonparametric Analysis of Longitudinal Data in Factorial
Experiments
Description: Provides nonparametric procedures for the analysis of longitudinal data in factorial experiments. The package implements hypothesis tests on marginal distribution functions and unweighted relative marginal effects. It supports arbitrary crossed factorial designs with longitudinal or repeated-measures factors, missing observations, dependent replicates, rank- and pseudo-rank-based inference, Wald-type and ANOVA-type statistics, multiple contrast tests, and simultaneous confidence intervals.
Author: Frank Konietschke [aut, cre],
Kimihiro Noguchi [ctb] ,
Mahbub Latif [ctb] ,
Karthinathan Thangavelu [ctb] ,
Yulia R. Gel [ctb] ,
Marek Sztuka [ctb] ,
Edgar Brunner [ctb]
Maintainer: Frank Konietschke <frank.konietschke@charite.de>
Diff between nparLD versions 2.3.1 dated 2026-08-28 and 2.3.3 dated 2026-10-14
DESCRIPTION | 15 MD5 | 79 +-- NAMESPACE | 67 +- NEWS.md | 19 R/PairedData.R | 7 R/Utility.R | 336 ++++++++----- R/accessors.R |only R/data.R | 78 +-- R/nparLD-package.R | 2 R/nparLD.R | 18 README.md | 4 inst/WORDLIST | 4 inst/doc/nparLD.R | 44 + inst/doc/nparLD.Rmd | 120 ++-- inst/doc/nparLD.html | 1033 ++++++++++++++++------------------------ man/ATS.Rd |only man/MCTP.Rd |only man/WTS.Rd |only man/amylase.Rd | 4 man/brdu.Rd | 2 man/contrastMatrix.Rd |only man/covariance.Rd |only man/dental.Rd | 8 man/edema.Rd | 8 man/effects.nparld_fit.Rd |only man/factorInfo.Rd |only man/nparLD-package.Rd | 11 man/nparLD.Rd | 18 man/panic.Rd | 8 man/panic2.Rd | 8 man/permTest.Rd |only man/plasma.Rd | 8 man/plot.nparld_fit.Rd | 12 man/plot.nparld_mctp.Rd | 2 man/print.nparld_fit.Rd | 29 - man/print.nparld_mctp.Rd | 6 man/print.nparld_permtest.Rd |only man/print.nparld_test_table.Rd |only man/print.summary.nparld_fit.Rd | 25 man/rat.Rd | 8 man/respiration.Rd | 8 man/shoulder.Rd | 8 man/summary.nparld_fit.Rd | 29 - man/tree.Rd | 8 tests/testthat/test-examples.R | 121 ++++ vignettes/nparLD.Rmd | 120 ++-- 46 files changed, 1216 insertions(+), 1061 deletions(-)
Title: Linear Latent Non-Gaussian Models with Flexible Distributions
Description: Fits and analyzes linear latent non-Gaussian models for
temporal, spatial, and space-time data. The package provides model
components for autoregressive and Ornstein-Uhlenbeck processes, random
walks, Matern fields based on stochastic partial differential equations,
separable and non-separable space-time models, graph-based Matern models,
bivariate type-G fields, and user-defined sparse operators. Latent fields
and observation models can use Gaussian and non-Gaussian noise
distributions, including normal inverse Gaussian, generalized asymmetric
Laplace, and skew-t distributions. Functions are included for simulation,
likelihood-based estimation, prediction, cross-validation, convergence
diagnostics, stochastic gradient optimization, batch-means confidence
intervals, and posterior-like sampling. The modeling framework is described
in Bolin, Jin, Simas and Wallin (2026) "A Unified and Computationally
Efficient Non-Gaussian Statistical Modeling Framework"
<doi:10.48550/arXiv.2602.23987 [...truncated...]
Author: David Bolin [aut, cph],
Xiaotian Jin [aut, cre],
Alexandre Simas [aut],
Jonas Wallin [aut],
Andrea V. Rocha [ctb] ,
Timothy A. Davis [ctb, cph] ,
Patrick R. Amestoy [ctb, cph] ,
Iain S. Duff [ctb, cph] ,
John K. Reid [ctb, cph] ,
Yanqing Chen [ctb, c [...truncated...]
Maintainer: Xiaotian Jin <xiaotian.jin@kaust.edu.sa>
This is a re-admission after prior archival of version 1.0.0 dated 2026-09-27
Diff between ngme2 versions 1.0.0 dated 2026-09-27 and 1.0.1 dated 2026-10-14
ngme2-1.0.0/ngme2/src/SuiteSparse/CHOLMOD/Cholesky/cholmod_solve-faf9ff52.o.tmp |only ngme2-1.0.0/ngme2/tests/testthat/Rplots.pdf |only ngme2-1.0.1/ngme2/DESCRIPTION | 8 +- ngme2-1.0.1/ngme2/MD5 | 33 ++++------ ngme2-1.0.1/ngme2/NEWS.md | 10 +++ ngme2-1.0.1/ngme2/build/partial.rdb |binary ngme2-1.0.1/ngme2/build/vignette.rds |binary ngme2-1.0.1/ngme2/inst/include/Eigen/CholmodSupport |only ngme2-1.0.1/ngme2/src/block.cpp | 2 ngme2-1.0.1/ngme2/tests/testthat.R | 2 ngme2-1.0.1/ngme2/tests/testthat/test-compose-bv.R | 9 +- ngme2-1.0.1/ngme2/tests/testthat/test-core-feff-precond.R | 1 ngme2-1.0.1/ngme2/tests/testthat/test-core-generic-ns.R | 8 +- ngme2-1.0.1/ngme2/tests/testthat/test-core-generic.R | 5 + ngme2-1.0.1/ngme2/tests/testthat/test-core-noise.R | 12 ++- ngme2-1.0.1/ngme2/tests/testthat/test-predict-chain-average.R | 3 ngme2-1.0.1/ngme2/tests/testthat/test-regression-bv-c-param.R | 3 ngme2-1.0.1/ngme2/tests/testthat/test-regression-mesh-per-replicate.R | 6 + ngme2-1.0.1/ngme2/tests/testthat/test-regression-robust.R | 1 19 files changed, 67 insertions(+), 36 deletions(-)
Title: Access Data from the 'Impect' API
Description: Pull data from the 'Impect' Customer API <https://glossary.impect.com/api-design>. The package can retrieve data such as events or match sums.
Author: Catapult Sports [cph],
Florian Schmitt [aut, cre],
Thomas Walentin [ctb]
Maintainer: Florian Schmitt <florian.schmitt@catapultsports.com>
Diff between impectR versions 2.5.6 dated 2026-06-25 and 2.6.0 dated 2026-10-14
DESCRIPTION | 18 ++--- MD5 | 42 +++++++---- NAMESPACE | 5 + NEWS.md | 16 ++++ R/getData.R |only R/getEvents.R | 3 R/getIterations.R | 40 +++++++++++ R/getMatchPredictions.R |only R/getMatches.R | 45 ++++++++---- R/getPlayerIterationAverages.R | 5 + R/getPlayerIterationScores.R | 5 + R/getPlayerMatchScores.R | 8 +- R/getPlayerMatchsums.R | 11 ++- R/getPlayerProfileScores.R | 7 + R/getSetPieces.R | 11 ++- R/getSquadIterationStyleOfPlay.R |only R/getSquadMatchStyleOfPlay.R |only R/getStartingPositions.R | 27 ++++++- R/getVideoClips.R |only R/utils.R | 129 +++++++++++++++++++++++++++++------- README.md | 42 ++++++++++- man/getData.Rd |only man/getMatchPredictions.Rd |only man/getSquadIterationStyleOfPlay.Rd |only man/getSquadMatchStyleOfPlay.Rd |only man/getStartingPositions.Rd | 12 ++- man/getVideoClips.Rd |only 27 files changed, 349 insertions(+), 77 deletions(-)
Title: AI Screening Tools in R for Systematic Reviewing
Description: Provides functions to conduct title and abstract screening in systematic reviews using large language models, such as the Generative Pre-trained Transformer (GPT) models from 'OpenAI' <https://developers.openai.com/>. These functions can enhance the quality of title and abstract screenings while reducing the total screening time significantly. In addition, the package includes tools for quality assessment of title and abstract screenings, as described in Vembye, Christensen, Mølgaard, and Schytt (2025) <DOI:10.1037/met0000769>.
Author: Mikkel H. Vembye [aut, cre] ,
Thomas Olsen [aut]
Maintainer: Mikkel H. Vembye <mikkel.vembye@gmail.com>
Diff between AIscreenR versions 0.4.0 dated 2026-07-01 and 0.5.0 dated 2026-10-14
DESCRIPTION | 9 MD5 | 80 ++++--- NAMESPACE | 2 NEWS.md | 8 R/approximate_price.R | 2 R/data.R | 4 R/misc.func.hidden.solve_or_guess.R |only R/misc.helpers.R | 3 R/ollama_engine.r | 13 + R/rank_one_diagnostic.R |only R/rate_limits.R | 4 R/report_errors.r | 34 +++ R/sample_references.R | 186 +++++++++++++++--- R/save_functions.r | 94 ++++++++- R/screen_analyzer.R | 2 R/solve_or_guess.R |only R/tabscreen_gpt.R | 6 R/tabscreen_gpt.original.R | 4 R/tabscreen_gpt.tools.R | 4 R/tabscreen_groq.r | 2 R/tabscreen_ollama.r | 2 build/partial.rdb |binary build/vignette.rds |binary data/claude_model_prizes.rda |binary data/gemini_model_prizes.rda |binary data/groq_model_prizes.rda |binary data/mistral_model_prizes.rda |binary data/model_prizes.rda |binary inst/doc/Using-GPT-API-Models-For-Screening.html | 15 - man/approximate_price_gpt.Rd | 2 man/model_prizes.Rd | 4 man/rank_one_diagnostic.Rd |only man/rate_limits_per_minute.Rd | 4 man/read_ris_to_dataframe.Rd | 3 man/report.Rd | 2 man/sample_references.Rd | 92 +++++++- man/screen_analyzer.Rd | 2 man/solve_or_guess.Rd |only man/tabscreen_gpt.original.Rd | 4 man/tabscreen_gpt.tools.Rd | 4 man/tabscreen_gpt.tools_responses.Rd | 6 tests/testthat/test-misc.func.hidden.solve_or_guess.R |only tests/testthat/test-rank_one_diagnostic.R |only tests/testthat/test-solve_or_guess.R |only tests/testthat/test-tabscreen_gpt.R | 4 45 files changed, 477 insertions(+), 124 deletions(-)
Title: Matrix Profile for R
Description: This is the core functions needed by the 'tsmp' package. The
low level and carefully checked mathematical functions are here.
These are implementations of the Matrix Profile concept that was
created by CS-UCR <http://www.cs.ucr.edu/~eamonn/MatrixProfile.html>.
Author: Francisco Bischoff [aut, cre] ,
Michael Yeh [res, ccp, ctb] ,
Diego Silva [res, ccp, ctb] ,
Yan Zhu [res, ccp, ctb] ,
Hoang Dau [res, ccp, ctb] ,
Michele Linardi [res, ccp, ctb]
Maintainer: Francisco Bischoff <fbischoff@med.up.pt>
Diff between matrixprofiler versions 0.1.10 dated 2025-12-01 and 0.1.12 dated 2026-10-14
matrixprofiler-0.1.10/matrixprofiler/data/datalist |only matrixprofiler-0.1.10/matrixprofiler/inst/API |only matrixprofiler-0.1.10/matrixprofiler/src/rcpp_parallel_fix.h |only matrixprofiler-0.1.10/matrixprofiler/tests/testthat/_snaps/stomp.md |only matrixprofiler-0.1.12/matrixprofiler/DESCRIPTION | 19 matrixprofiler-0.1.12/matrixprofiler/MD5 | 153 matrixprofiler-0.1.12/matrixprofiler/NAMESPACE | 9 matrixprofiler-0.1.12/matrixprofiler/NEWS | 350 + matrixprofiler-0.1.12/matrixprofiler/NEWS.md | 302 + matrixprofiler-0.1.12/matrixprofiler/R/RcppExports.R | 192 matrixprofiler-0.1.12/matrixprofiler/R/contrast.R | 57 matrixprofiler-0.1.12/matrixprofiler/R/mass.R | 158 matrixprofiler-0.1.12/matrixprofiler/R/matrixprofiler-package.R | 30 matrixprofiler-0.1.12/matrixprofiler/R/mpdist.R |only matrixprofiler-0.1.12/matrixprofiler/R/mpx.R | 331 + matrixprofiler-0.1.12/matrixprofiler/R/mstomp.R |only matrixprofiler-0.1.12/matrixprofiler/R/rfcp.R |only matrixprofiler-0.1.12/matrixprofiler/R/rfcp_top_k.R |only matrixprofiler-0.1.12/matrixprofiler/R/scrimp.R | 155 matrixprofiler-0.1.12/matrixprofiler/R/stamp.R | 153 matrixprofiler-0.1.12/matrixprofiler/R/stomp.R | 140 matrixprofiler-0.1.12/matrixprofiler/R/windowfunc.R | 342 - matrixprofiler-0.1.12/matrixprofiler/R/zzz.R | 2 matrixprofiler-0.1.12/matrixprofiler/README.md | 165 matrixprofiler-0.1.12/matrixprofiler/inst/API-v0.1.0 |only matrixprofiler-0.1.12/matrixprofiler/inst/API-v0.1.12 |only matrixprofiler-0.1.12/matrixprofiler/inst/WORDLIST | 82 matrixprofiler-0.1.12/matrixprofiler/inst/cuda |only matrixprofiler-0.1.12/matrixprofiler/inst/schemaorg.json | 4 matrixprofiler-0.1.12/matrixprofiler/man/contrast.Rd | 4 matrixprofiler-0.1.12/matrixprofiler/man/figures/dependency_plot-1.png |binary matrixprofiler-0.1.12/matrixprofiler/man/figures/logo.png |only matrixprofiler-0.1.12/matrixprofiler/man/has_cuda.Rd |only matrixprofiler-0.1.12/matrixprofiler/man/mass.Rd | 4 matrixprofiler-0.1.12/matrixprofiler/man/matrixprofiler.Rd | 30 matrixprofiler-0.1.12/matrixprofiler/man/mp_algos.Rd | 121 matrixprofiler-0.1.12/matrixprofiler/man/mpdist.Rd |only matrixprofiler-0.1.12/matrixprofiler/man/mstomp.Rd |only matrixprofiler-0.1.12/matrixprofiler/man/rfcp.Rd |only matrixprofiler-0.1.12/matrixprofiler/man/rfcp_top_k.Rd |only matrixprofiler-0.1.12/matrixprofiler/man/windowfunc.Rd | 69 matrixprofiler-0.1.12/matrixprofiler/src/Makevars | 9 matrixprofiler-0.1.12/matrixprofiler/src/Makevars.win | 4 matrixprofiler-0.1.12/matrixprofiler/src/RcppExports.cpp | 567 ++ matrixprofiler-0.1.12/matrixprofiler/src/contrast.cpp | 5 matrixprofiler-0.1.12/matrixprofiler/src/contrast.h | 4 matrixprofiler-0.1.12/matrixprofiler/src/fft.cpp | 12 matrixprofiler-0.1.12/matrixprofiler/src/mass.cpp | 450 + matrixprofiler-0.1.12/matrixprofiler/src/mass.h | 58 matrixprofiler-0.1.12/matrixprofiler/src/mathtools.cpp | 10 matrixprofiler-0.1.12/matrixprofiler/src/mpdist.cpp |only matrixprofiler-0.1.12/matrixprofiler/src/mpdist.h |only matrixprofiler-0.1.12/matrixprofiler/src/mpx.cpp | 599 +- matrixprofiler-0.1.12/matrixprofiler/src/mpx.h | 8 matrixprofiler-0.1.12/matrixprofiler/src/mpx_gpu.cpp |only matrixprofiler-0.1.12/matrixprofiler/src/mpx_gpu.h |only matrixprofiler-0.1.12/matrixprofiler/src/mpx_parallel.cpp | 2335 +++++++++- matrixprofiler-0.1.12/matrixprofiler/src/mpx_parallel.h | 18 matrixprofiler-0.1.12/matrixprofiler/src/mstomp.cpp |only matrixprofiler-0.1.12/matrixprofiler/src/mstomp.h |only matrixprofiler-0.1.12/matrixprofiler/src/progress_bar.h |only matrixprofiler-0.1.12/matrixprofiler/src/rfcp.cpp |only matrixprofiler-0.1.12/matrixprofiler/src/rfcp.h |only matrixprofiler-0.1.12/matrixprofiler/src/rfcp_gpu.cpp |only matrixprofiler-0.1.12/matrixprofiler/src/rfcp_gpu.h |only matrixprofiler-0.1.12/matrixprofiler/src/scrimp.cpp | 705 --- matrixprofiler-0.1.12/matrixprofiler/src/scrimp.h | 6 matrixprofiler-0.1.12/matrixprofiler/src/stamp.cpp | 451 - matrixprofiler-0.1.12/matrixprofiler/src/stamp.h | 2 matrixprofiler-0.1.12/matrixprofiler/src/stomp.cpp | 383 - matrixprofiler-0.1.12/matrixprofiler/src/stomp.h | 4 matrixprofiler-0.1.12/matrixprofiler/src/windowfunc.cpp | 982 +++- matrixprofiler-0.1.12/matrixprofiler/src/windowfunc.h | 25 matrixprofiler-0.1.12/matrixprofiler/tests/testthat.R | 25 matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-algorithms.R | 51 matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-contrast.R | 22 matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-mass.R | 30 matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-math.R | 39 matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-mpdist.R |only matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-mpx-branches.R |only matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-mpx-na.R |only matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-mpx-stream.R |only matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-mpx.R | 212 matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-mstomp.R |only matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-rfcp-branches.R |only matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-rfcp-top-k-checkpoint.R |only matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-rfcp-top-k.R |only matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-rfcp.R |only matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-scrimp.R | 71 matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-stamp.R | 48 matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-stomp.R | 198 matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-windowfunc-branches.R |only matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-windowfunc.R | 57 matrixprofiler-0.1.12/matrixprofiler/tests/testthat/test-zero-crossing.R |only 94 files changed, 7352 insertions(+), 2910 deletions(-)
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