Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate, ?modify, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 1.3.4 dated 2026-03-11 and 1.4.0 dated 2026-10-24
DESCRIPTION | 6 MD5 | 59 ++++--- NAMESPACE | 2 R/classified.R | 80 ++++++++++ R/decorate.R | 1 inst/doc/aesthetics.html | 10 - inst/doc/scripted-html.html | 4 inst/doc/scripted-pdf.pdf |binary inst/doc/yamlet-introduction.html | 4 man/as.integer.classified.Rd | 4 man/c.classified.Rd | 1 man/classified.Rd | 1 man/classified.classified.Rd | 1 man/classified.data.frame.Rd | 1 man/classified.default.Rd | 1 man/classified.dvec.Rd | 1 man/classified.factor.Rd | 1 man/codify.Rd |only man/codify.default.Rd |only man/desolve.classified.Rd | 1 man/sub-.classified.Rd | 1 man/sub-sub-.classified.Rd | 1 man/sub-subset-.classified.Rd | 1 man/subset-.classified.Rd | 1 man/unclassified.Rd | 1 man/unclassified.classified.Rd | 1 man/unclassified.data.frame.Rd | 1 tests/testthat/138.rds |only tests/testthat/139.rds |only tests/testthat/140.rds |only tests/testthat/test-classified.R | 16 ++ vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-4-1.pdf |binary vignettes/scripted-pdf_files/figure-latex/unnamed-chunk-5-1.pdf |binary 33 files changed, 162 insertions(+), 39 deletions(-)
Title: Surrogate Residuals for Ordinal and General Regression Models
Description: An implementation of the surrogate approach to residuals and
diagnostics for ordinal and general regression models; for details, see Liu
and Zhang (2018) <doi:10.1080/01621459.2017.1292915> and Greenwell et al.
(2018) <doi:10.32614/RJ-2018-004>. These residuals can be used to construct
standard residual plots for model diagnostics (e.g., residual-vs-fitted
value plots, residual-vs-covariate plots, Q-Q plots, etc.). The package also
provides 'plot' methods for producing standard diagnostic plots using
lightweight base R graphics (via 'tinyplot'). The package currently
supports cumulative link models from packages 'MASS', 'ordinal', 'rms', and
'VGAM', binary and other generalized linear models fit with 'glm', and
multinomial models or general classifiers via a matrix of predicted class
probabilities.
Author: Brandon Greenwell [aut, cre],
Andrew McCarthy [aut],
Bradley Boehmke [aut],
Liz Glaser [ctb]
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between sure versions 0.2.0 dated 2017-09-19 and 0.3.1 dated 2026-10-24
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Title: Optimal Stratification of Univariate Populations
Description: Determines Optimum Strata Boundaries (OSB) and Optimum Sample
Sizes (OSS) for univariate stratified sampling designs under Neyman
allocation. The stratification variable is described by a best-fitting
parametric distribution, selected automatically by AIC from a set of
continuous families (normal, log-normal, gamma, Weibull, exponential,
Cauchy, uniform, Pareto, triangular and right-triangular), and the
optimum boundaries are obtained by minimising the Neyman objective.
Version 2.0 keeps the Dynamic Programming (DP) solver of Reddy and Khan
(2020), which is globally optimal for the fitted distribution, as the
default. It adds two fast derivative-free solvers, a multi-start
'COBYLA' solver and a two-phase global solver that couples 'DIRECT-L'
with 'BOBYQA' refinement, and an exact solver that runs dynamic
programming on the sorted data and returns the partition with the
smallest empirical Neyman cost. It also provides cost-constrained
allocation with unequal per-stratum costs, a desi [...truncated...]
Author: Karuna G. Reddy [aut, cre] ,
M. G. M. Khan [aut]
Maintainer: Karuna G. Reddy <karuna.reddy@auckland.ac.nz>
Diff between stratifyR versions 2.0-3 dated 2026-10-17 and 2.0-4 dated 2026-10-24
DESCRIPTION | 8 MD5 | 32 +- NEWS.md | 53 ++++ R/compare_designs.R | 2 R/data.alloc.R | 19 + R/exact.optim.R | 213 +++++++++++++++++++ R/plot.strata.R | 2 R/print.strata.R | 2 R/strata.data.R | 34 ++- R/summary.strata.R | 7 inst/app/app.R | 432 ++++++++++++++++++++++----------------- inst/doc/stratifyR-vignette.R | 11 inst/doc/stratifyR-vignette.Rmd | 40 ++- inst/doc/stratifyR-vignette.html | 121 ++++++++-- man/strata.data.Rd | 27 ++ tests/testthat/test-solvers.R | 37 +++ vignettes/stratifyR-vignette.Rmd | 40 ++- 17 files changed, 816 insertions(+), 264 deletions(-)
Title: Public Suffix List Engine
Description: A focused implementation of the Public Suffix List (PSL). Bundles a
reproducible, pinned PSL snapshot and implements the official prevailing-rule
algorithm to answer public-suffix (eTLD) and registrable-domain (eTLD+1)
queries. Distinguishes ICANN and PRIVATE rule sections, accepts Unicode and
ASCII hostnames via 'punycoder' canonicalization, and supports an explicit,
validated offline refresh path. The matcher is compiled with 'cpp11' and
requires no external system library. Used as the PSL engine by the 'rurl'
package.
Author: Bart Turczynski [aut, cre, cph]
Maintainer: Bart Turczynski <bartek@turczynski.pl>
Diff between pslr versions 1.2.1 dated 2026-09-14 and 1.2.2 dated 2026-10-24
pslr-1.2.1/pslr/tests/testthat/freshness.feature |only pslr-1.2.1/pslr/tests/testthat/public-api.feature |only pslr-1.2.1/pslr/tests/testthat/setup-steps.R |only pslr-1.2.1/pslr/tests/testthat/test-cucumber.R |only pslr-1.2.2/pslr/DESCRIPTION | 24 pslr-1.2.2/pslr/MD5 | 112 +- pslr-1.2.2/pslr/NEWS.md | 29 pslr-1.2.2/pslr/R/ascii.R |only pslr-1.2.2/pslr/R/cache.R | 8 pslr-1.2.2/pslr/R/canonicalize.R | 2 pslr-1.2.2/pslr/R/duplicates.R | 2 pslr-1.2.2/pslr/R/freshness-schema.R | 44 pslr-1.2.2/pslr/R/http-transport.R | 145 ++ pslr-1.2.2/pslr/R/matcher.R | 4 pslr-1.2.2/pslr/R/migration.R | 12 pslr-1.2.2/pslr/R/parser.R | 2 pslr-1.2.2/pslr/R/prune.R | 2 pslr-1.2.2/pslr/R/query.R | 2 pslr-1.2.2/pslr/R/refresh-conditions.R | 4 pslr-1.2.2/pslr/R/refresh-machine.R | 19 pslr-1.2.2/pslr/R/refresh.R | 53 - pslr-1.2.2/pslr/R/snapshots.R | 2 pslr-1.2.2/pslr/R/status.R | 48 pslr-1.2.2/pslr/R/sysdata.rda |binary pslr-1.2.2/pslr/R/url-policy.R | 6 pslr-1.2.2/pslr/R/validator-policy.R | 26 pslr-1.2.2/pslr/README.md | 120 -- pslr-1.2.2/pslr/build/vignette.rds |binary pslr-1.2.2/pslr/inst/WORDLIST | 144 ++ pslr-1.2.2/pslr/inst/doc/comparison.Rmd |only pslr-1.2.2/pslr/inst/doc/comparison.html |only pslr-1.2.2/pslr/inst/doc/introduction.Rmd | 2 pslr-1.2.2/pslr/inst/doc/introduction.html | 8 pslr-1.2.2/pslr/man/figures |only pslr-1.2.2/pslr/man/pslr-package.Rd | 6 pslr-1.2.2/pslr/src/matcher.cpp | 2 pslr-1.2.2/pslr/tests/testthat/fixtures/case-folding-locales.txt |only pslr-1.2.2/pslr/tests/testthat/helper-active.R | 6 pslr-1.2.2/pslr/tests/testthat/helper-locale.R |only pslr-1.2.2/pslr/tests/testthat/helper-oracle.R | 4 pslr-1.2.2/pslr/tests/testthat/helper-security.R |only pslr-1.2.2/pslr/tests/testthat/helper-status.R |only pslr-1.2.2/pslr/tests/testthat/test-ascii.R |only pslr-1.2.2/pslr/tests/testthat/test-cache.R | 4 pslr-1.2.2/pslr/tests/testthat/test-engine.R | 4 pslr-1.2.2/pslr/tests/testthat/test-freshness-corpus.R | 8 pslr-1.2.2/pslr/tests/testthat/test-freshness-schema.R | 63 + pslr-1.2.2/pslr/tests/testthat/test-http-transport.R | 520 +++++++++- pslr-1.2.2/pslr/tests/testthat/test-matcher.R | 14 pslr-1.2.2/pslr/tests/testthat/test-migration.R | 22 pslr-1.2.2/pslr/tests/testthat/test-oracle.R | 2 pslr-1.2.2/pslr/tests/testthat/test-parser.R | 24 pslr-1.2.2/pslr/tests/testthat/test-profile-rebuild.R | 53 + pslr-1.2.2/pslr/tests/testthat/test-query.R | 27 pslr-1.2.2/pslr/tests/testthat/test-refresh-machine.R | 218 ++++ pslr-1.2.2/pslr/tests/testthat/test-refresh.R | 36 pslr-1.2.2/pslr/tests/testthat/test-security.R | 184 +++ pslr-1.2.2/pslr/tests/testthat/test-snapshots.R | 18 pslr-1.2.2/pslr/tests/testthat/test-status.R | 80 + pslr-1.2.2/pslr/tests/testthat/test-validator-policy.R | 9 pslr-1.2.2/pslr/tools/check-urls.R |only pslr-1.2.2/pslr/tools/verify.sh | 180 +++ pslr-1.2.2/pslr/vignettes/comparison.Rmd |only pslr-1.2.2/pslr/vignettes/introduction.Rmd | 2 64 files changed, 1967 insertions(+), 339 deletions(-)
Title: Project School Enrollment with Grade Progression Ratios
Description: Projects school enrollment using the cohort survival / grade
progression ratio method described in Webster (1970)
<doi:10.1080/00220973.1970.11011238>, implemented as a matrix
projection. Works at any level of aggregation and any number of grades.
Provides functions to compute progression ratios from historical
grade-level enrollment and to project future enrollment forward an
arbitrary horizon.
Author: Rory Lawless [aut, cre, cph]
Maintainer: Rory Lawless <rory@rorylawless.com>
Diff between enrollcast versions 0.1.0 dated 2026-08-26 and 0.2.0 dated 2026-10-24
DESCRIPTION | 13 MD5 | 45 +- NEWS.md | 18 + R/progression-matrix.R | 25 - R/progression-ratios.R | 25 - R/project-enrollment.R | 207 +++++++++--- R/swing-schedule.R | 231 +++++++------- README.md | 18 - build/partial.rdb |only build/vignette.rds |binary inst/doc/enrollcast.R | 17 - inst/doc/enrollcast.Rmd | 132 ++++++-- inst/doc/enrollcast.html | 193 ++++++++--- man/enrollcast-package.Rd | 7 man/progression_matrix.Rd | 25 - man/progression_ratios.Rd | 25 - man/project_enrollment.Rd | 74 ++-- man/swing_schedule.Rd | 78 ++-- tests/testthat/_snaps/project-enrollment.md | 54 +++ tests/testthat/_snaps/swing-schedule.md | 96 +++-- tests/testthat/helper-enrollcast.R | 22 + tests/testthat/test-project-enrollment.R | 154 +++++++++ tests/testthat/test-swing-schedule.R | 451 ++++++++++++++++++---------- vignettes/enrollcast.Rmd | 132 ++++++-- 24 files changed, 1406 insertions(+), 636 deletions(-)
Title: A Collection of Contrast Methods
Description: One degree of freedom contrasts for 'lm', 'glm', 'gls', and 'geese' objects.
Author: Alan O'Callaghan [cre],
Max Kuhn [aut],
Steve Weston [aut],
Jed Wing [aut],
James Forester [aut],
Thorn Thaler [aut]
Maintainer: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Diff between contrast versions 0.24.2 dated 2022-10-05 and 0.25.0 dated 2026-10-24
DESCRIPTION | 14 MD5 | 40 - NAMESPACE | 64 +- NEWS.md | 7 R/contrast.lm.R | 24 R/gets.R | 7 R/misc.R | 16 R/model.frames.R | 2 R/testStatistic.R | 10 README.md | 4 build/vignette.rds |binary inst/doc/contrast.Rmd | 18 inst/doc/contrast.html | 1390 ++++++++++++++++++-------------------------- man/contrast.lm.Rd | 4 man/reexports.Rd | 2 tests/testthat/test-geese.R | 5 tests/testthat/test-glm.R | 15 tests/testthat/test-gls.R | 13 tests/testthat/test-lm.R | 84 ++ tests/testthat/test-lme.R | 8 vignettes/contrast.Rmd | 18 21 files changed, 866 insertions(+), 879 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Bryce Mecum [aut],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb], [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 25.0.1 dated 2026-08-23 and 26.0.0 dated 2026-10-24
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arrow-26.0.0/arrow/R/dplyr-summarize.R | 2 arrow-26.0.0/arrow/R/extension.R | 8 arrow-26.0.0/arrow/R/feather.R | 245 - arrow-26.0.0/arrow/R/filesystem.R | 121 arrow-26.0.0/arrow/R/ipc-stream.R | 42 arrow-26.0.0/arrow/R/parquet.R | 2 arrow-26.0.0/arrow/R/record-batch-reader.R | 4 arrow-26.0.0/arrow/R/record-batch-writer.R | 4 arrow-26.0.0/arrow/R/type.R | 4 arrow-26.0.0/arrow/R/udf.R | 36 arrow-26.0.0/arrow/R/util.R | 4 arrow-26.0.0/arrow/README.md | 4 arrow-26.0.0/arrow/configure | 10 arrow-26.0.0/arrow/configure.win | 35 arrow-26.0.0/arrow/inst/build_arrow_static.sh | 99 arrow-26.0.0/arrow/man/CsvReadOptions.Rd | 14 arrow-26.0.0/arrow/man/FileFormat.Rd | 4 arrow-26.0.0/arrow/man/FileSystem.Rd | 35 arrow-26.0.0/arrow/man/RecordBatchReader.Rd | 4 arrow-26.0.0/arrow/man/RecordBatchWriter.Rd | 4 arrow-26.0.0/arrow/man/acero.Rd | 4 arrow-26.0.0/arrow/man/add_filename.Rd | 38 arrow-26.0.0/arrow/man/arrow_info.Rd | 3 arrow-26.0.0/arrow/man/az_container.Rd |only 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arrow-26.0.0/arrow/tools/cpp/src/parquet/level_conversion.cc | 11 arrow-26.0.0/arrow/tools/cpp/src/parquet/level_conversion.h | 25 arrow-26.0.0/arrow/tools/cpp/src/parquet/meson.build | 4 arrow-26.0.0/arrow/tools/cpp/src/parquet/metadata.cc | 129 arrow-26.0.0/arrow/tools/cpp/src/parquet/metadata.h | 33 arrow-26.0.0/arrow/tools/cpp/src/parquet/page_index.cc | 8 arrow-26.0.0/arrow/tools/cpp/src/parquet/page_index.h | 4 arrow-26.0.0/arrow/tools/cpp/src/parquet/parquet.thrift | 58 arrow-26.0.0/arrow/tools/cpp/src/parquet/printer.cc | 215 - arrow-26.0.0/arrow/tools/cpp/src/parquet/properties.h | 45 arrow-26.0.0/arrow/tools/cpp/src/parquet/schema.cc | 78 arrow-26.0.0/arrow/tools/cpp/src/parquet/schema_internal.h | 10 arrow-26.0.0/arrow/tools/cpp/src/parquet/size_statistics.cc | 2 arrow-26.0.0/arrow/tools/cpp/src/parquet/statistics.cc | 59 arrow-26.0.0/arrow/tools/cpp/src/parquet/statistics.h | 2 arrow-26.0.0/arrow/tools/cpp/src/parquet/test_util.h | 69 arrow-26.0.0/arrow/tools/cpp/src/parquet/thrift_internal.h | 88 arrow-26.0.0/arrow/tools/cpp/src/parquet/types.cc | 135 arrow-26.0.0/arrow/tools/cpp/subprojects/boost.wrap | 8 arrow-26.0.0/arrow/tools/cpp/subprojects/bzip2.wrap | 11 arrow-26.0.0/arrow/tools/cpp/subprojects/simdjson.wrap |only arrow-26.0.0/arrow/tools/cpp/subprojects/uriparser.wrap |only arrow-26.0.0/arrow/tools/cpp/thirdparty/download_dependencies.sh | 4 arrow-26.0.0/arrow/tools/cpp/thirdparty/versions.txt | 14 arrow-26.0.0/arrow/tools/cpp/tools/parquet/parquet_dump_footer.cc | 4 arrow-26.0.0/arrow/tools/cpp/vcpkg.json | 4 arrow-26.0.0/arrow/tools/dotenv | 15 arrow-26.0.0/arrow/tools/download_dependencies_R.sh | 6 arrow-26.0.0/arrow/tools/nixlibs.R | 42 407 files changed, 13135 insertions(+), 7162 deletions(-)
Title: Access the 'Windsor.ai' API
Description: Collect multichannel marketing data from sources such as Google analytics, Facebook Ads, and many others using the 'Windsor.ai' API <https://windsor.ai/api-documentation/>.
Author: Octavian Corlade [aut, cre],
Novica Nakov [aut],
Windsor.ai [cph]
Maintainer: Octavian Corlade <octavian.corlade@gmail.com>
Diff between windsoraiR versions 0.1.2 dated 2021-05-10 and 0.1.3 dated 2026-10-24
DESCRIPTION | 27 +- MD5 | 24 +- NEWS.md | 5 R/data.R | 4 R/windsor_fetch.R | 14 - README.md | 6 build/vignette.rds |binary inst/doc/basics.R | 30 +- inst/doc/basics.Rmd | 2 inst/doc/basics.html | 523 ++++++++++++++++++++++++++++++++++++--------------- man/my_data.Rd | 4 man/windsor_fetch.Rd | 6 vignettes/basics.Rmd | 2 13 files changed, 445 insertions(+), 202 deletions(-)
Title: 'Copernicus' HR-VPP Vegetation Time-Series Processing
Description: Provides tools for acquiring, extracting, quality-assessing, and
analysing vegetation time series derived from 'Copernicus' High Resolution
Vegetation Phenology and Productivity (HR-VPP) products. Supports Seasonal
Trajectories (ST) and Vegetation Phenology and Productivity (VPP) products
through native R access to 'WEkEO', geospatial processing, product-quality
assessment, temporal completeness analysis, missingness modelling, and
integrated graphical workflows. Selected functions from 'TSGenerator' 1.x are
retained to support migration and legacy workflows.
Author: Alexey Valero-Jorge [aut, cre] ,
M. Auxiliadora Casterad Seral [aut] ,
Jose-Tomas Alcala Nalvaiz [aut]
Maintainer: Alexey Valero-Jorge <avalero@cita-aragon.es>
Diff between TSGenerator versions 2.0.0 dated 2026-10-21 and 2.0.1 dated 2026-10-24
DESCRIPTION | 8 LICENSE | 4 MD5 | 283 ++--- NAMESPACE | 160 +- NEWS.md | 6 R/Download.HRVPP.R | 62 - R/Download.STPPI.R | 66 - R/GAM.missing.R | 58 - R/GAM.plot.R | 42 R/TSGenerator-package.R | 54 R/TsImpute.R | 80 - R/acquisition-robustness.R | 166 +-- R/count.NA.R | 24 R/count_missing.R | 30 R/download-st.R | 726 ++++++------- R/download-vpp.R | 762 ++++++------- R/extract-ts.R | 284 ++--- R/extract-vpp.R | 27 R/extract_dates_from_tiff_files.R | 22 R/general.Quality.R | 34 R/geospatial-core.R | 294 ++--- R/get.Series.VPP.R | 28 R/get.Series.mean.R | 34 R/get.Series.median.R | 36 R/globals.R | 2 R/hda-backend.R | 298 ++--- R/imports.R | 22 R/impute-ts.R | 308 ++--- R/legacy-api.R | 22 R/legacy-download-vi.R | 20 R/legacy-get-clean-vi.R | 12 R/legacy-get-stack.R | 12 R/legacy-qflag2-mask.R | 12 R/legacy-rename-vi.R | 12 R/missingness-model.R | 182 +-- R/quality-core.R | 346 +++--- R/quality.Series.R | 28 R/renames.image.VPP.R | 18 R/runTSapp.R | 116 +- R/temporal-core.R | 202 +-- R/temporal-quality.R | 346 +++--- R/utils-dates.R | 36 R/wekeo-integration.R | 220 +-- README.md | 579 +++++----- build/vignette.rds |binary inst/CITATION | 31 inst/app/DownloadSTPPI/global.R | 8 inst/app/DownloadSTPPI/server.R | 52 inst/app/DownloadSTPPI/ui.R | 36 inst/app/DownloadVPP/global.R | 8 inst/app/DownloadVPP/server.R | 52 inst/app/DownloadVPP/ui.R | 40 inst/app/TSGenerator2/R/mod_acquisition.R | 452 ++++---- inst/app/TSGenerator2/R/mod_dashboard.R | 242 ++-- inst/app/TSGenerator2/R/mod_export.R | 236 ++-- inst/app/TSGenerator2/R/mod_quality.R | 128 +- inst/app/TSGenerator2/R/mod_spatial.R | 70 + inst/app/TSGenerator2/R/mod_temporal.R | 120 +- inst/app/TSGenerator2/app.R | 22 inst/app/TSGenerator2/www/tsgenerator.css | 50 inst/doc/getting-started.R | 158 +- inst/doc/getting-started.Rmd | 298 ++--- inst/doc/getting-started.html | 1102 +++++++++----------- inst/doc/migration-1x-to-2x.R | 74 - inst/doc/migration-1x-to-2x.Rmd | 242 ++-- inst/doc/migration-1x-to-2x.html | 1091 +++++++++---------- inst/doc/st-vpp-workflows.R | 206 +-- inst/doc/st-vpp-workflows.Rmd | 334 +++--- inst/doc/st-vpp-workflows.html | 1095 +++++++++---------- man/Download.HRVPP.Rd | 40 man/Download.STPPI.Rd | 40 man/Download.VI.Rd | 10 man/GAM.missing.Rd | 78 - man/GAM.plot.Rd | 98 - man/QFLAG2.Mask.Rd | 44 man/TSGenerator-package.Rd | 66 - man/TsImpute.Rd | 68 - man/assess_ts_quality.Rd | 58 - man/check_wekeo.Rd | 4 man/check_wekeo_integration.Rd | 70 - man/classify_quality.Rd | 4 man/count.NA.Rd | 38 man/count_missing.Rd | 24 man/download_st.Rd | 52 man/download_vpp.Rd | 52 man/extract_dates_from_tiff_files.Rd | 60 - man/extract_ts.Rd | 46 man/extract_vpp.Rd | 42 man/general.Quality.Rd | 42 man/geospatial_plan.Rd | 14 man/get.Clean.IV.Rd | 44 man/get.Series.VPP.Rd | 20 man/get.Series.mean.Rd | 14 man/get.Series.median.Rd | 14 man/get.Stack.Rd | 44 man/hda_auth_check.Rd | 4 man/hda_client.Rd | 4 man/hda_datasets.Rd | 4 man/hda_download.Rd | 14 man/hda_query_template.Rd | 4 man/hda_search.Rd | 4 man/impute_ts.Rd | 46 man/mask_quality.Rd | 42 man/model_missingness.Rd | 24 man/plot_missingness.Rd | 14 man/quality.Series.Rd | 46 man/quality_info.Rd | 4 man/renames.image.IV.Rd | 44 man/renames.image.VPP.Rd | 44 man/runTSapp.Rd | 64 - man/summarize_missingness.Rd | 52 man/summarize_quality.Rd | 4 man/temporal_plan.Rd | 14 tests/testthat.R | 10 tests/testthat/test-acquisition-robustness.R | 60 - tests/testthat/test-core-utils.R | 36 tests/testthat/test-download-st.R | 72 - tests/testthat/test-download-vi.R | 20 tests/testthat/test-download-vpp.R | 98 - tests/testthat/test-extract-ts.R | 120 +- tests/testthat/test-extract-vpp.R | 56 - tests/testthat/test-geospatial-core.R | 58 - tests/testthat/test-hda-backend.R | 28 tests/testthat/test-impute-ts.R | 70 - tests/testthat/test-installed-api-smoke.R | 38 tests/testthat/test-missingness-model.R | 48 tests/testthat/test-package-engineering.R | 30 tests/testthat/test-phase2-5-native.R | 26 tests/testthat/test-phase3-5-legacy-geospatial.R | 32 tests/testthat/test-phase4-5-consolidation.R | 38 tests/testthat/test-phase5-7-1-shiny-shell.R | 38 tests/testthat/test-phase5-7-2-acquisition-app.R | 28 tests/testthat/test-phase5-7-6-shiny-integration.R | 36 tests/testthat/test-quality-core.R | 90 - tests/testthat/test-rc2-release-engineering.R | 18 tests/testthat/test-shiny-spatial-module.R | 18 tests/testthat/test-temporal-core.R | 44 tests/testthat/test-temporal-quality.R | 68 - tests/testthat/test-vpp-scale-metadata-regression.R |only tests/testthat/test-wekeo-integration.R | 48 vignettes/getting-started.Rmd | 298 ++--- vignettes/migration-1x-to-2x.Rmd | 242 ++-- vignettes/st-vpp-workflows.Rmd | 334 +++--- 143 files changed, 7982 insertions(+), 7868 deletions(-)
Title: 'DuckDB' High Throughput Sequencing File Formats Reader
Extension
Description: Bundles the 'duckhts' 'DuckDB' extension for reading High Throughput
Sequencing file formats with 'DuckDB'. The 'DuckDB' C extension API
<https://duckdb.org/docs/stable/clients/c/api> and its 'htslib' dependency are
compiled from vendored sources during package installation. James K Bonfield and co-authors (2021) <doi:10.1093/gigascience/giab007>. VariantKey / RegionKey support follows Nicola Asuni (2018) <doi:10.1101/473744>.
Author: Sounkou Mahamane Toure [aut, cre],
Ryan Ward [aut] ,
Nurture Bio [cph] ,
James K Bonfield, John Marshall,Petr Danecek ,Heng Li , Valeriu Ohan,
Andrew Whitwham,Thomas Keane , Robert M Davies [ctb] ,
DuckHTS Contributors [cph] ),
RBCFTools Authors [cph [...truncated...]
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>
Diff between Rduckhts versions 2.0.0.0.1.9 dated 2026-10-20 and 2.0.1.0.1.0 dated 2026-10-24
Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/geno_format_case.bcf.csi |only Rduckhts-2.0.0.0.1.9/Rduckhts/inst/extdata/geno_format_case.vcf.gz.tbi |only Rduckhts-2.0.1.0.1.0/Rduckhts/DESCRIPTION | 6 Rduckhts-2.0.1.0.1.0/Rduckhts/MD5 | 41 +- Rduckhts-2.0.1.0.1.0/Rduckhts/NEWS.md | 31 ++ Rduckhts-2.0.1.0.1.0/Rduckhts/R/duckhts.R | 18 + Rduckhts-2.0.1.0.1.0/Rduckhts/R/roh.R | 18 - Rduckhts-2.0.1.0.1.0/Rduckhts/R/sql_helpers.R | 8 Rduckhts-2.0.1.0.1.0/Rduckhts/inst/duckhts_extension/bgzip.c | 142 +++++----- Rduckhts-2.0.1.0.1.0/Rduckhts/inst/duckhts_extension/cgranges_api.c | 44 +++ Rduckhts-2.0.1.0.1.0/Rduckhts/inst/duckhts_extension/count_mixture_sql.c | 6 Rduckhts-2.0.1.0.1.0/Rduckhts/inst/function_catalog/functions.yaml | 10 Rduckhts-2.0.1.0.1.0/Rduckhts/inst/function_catalog/reference.md | 12 Rduckhts-2.0.1.0.1.0/Rduckhts/inst/tinytest/bcf_snapshot_query.R |only Rduckhts-2.0.1.0.1.0/Rduckhts/inst/tinytest/test_bcf.R | 73 +++-- Rduckhts-2.0.1.0.1.0/Rduckhts/inst/tinytest/test_bcftools_norm.R | 10 Rduckhts-2.0.1.0.1.0/Rduckhts/inst/tinytest/test_cgranges_api.R | 36 ++ Rduckhts-2.0.1.0.1.0/Rduckhts/inst/tinytest/test_convert_parquet.R | 9 Rduckhts-2.0.1.0.1.0/Rduckhts/inst/tinytest/test_count_mixture_lowpass.R | 12 Rduckhts-2.0.1.0.1.0/Rduckhts/inst/tinytest/test_geno_sites.R | 3 Rduckhts-2.0.1.0.1.0/Rduckhts/inst/tinytest/test_indexes_bgzip.R | 48 +++ Rduckhts-2.0.1.0.1.0/Rduckhts/inst/tinytest/test_roh.R | 3 Rduckhts-2.0.1.0.1.0/Rduckhts/man/rduckhts_bed.Rd | 18 + 23 files changed, 427 insertions(+), 121 deletions(-)
Title: Automated Psychometric Workflows and Reporting Tools
Description: Automates common psychometric workflows for applied researchers,
including item descriptives, inter-item correlations, exploratory and
confirmatory factor analysis, exploratory structural equation measurement
models, reliability, psychometric network analysis, multi-group measurement
invariance, and alignment optimization. Decision heuristics are informed by
procedures such as parallel analysis (Horn, 1965,
<doi:10.1007/BF02289447>), multivariate normality diagnostics (Mardia,
1970, <doi:10.1093/biomet/57.3.519>), measurement-invariance fit-change
rules (Chen, 2007, <doi:10.1080/10705510701301834>), and alignment
optimization (Asparouhov and Muthen, 2014,
<doi:10.1080/10705511.2014.919210>), among others. Results can be returned as structured
R objects and exported as bilingual reports for transparent analytical
documentation.
Author: Jose Gamarra-Moncayo [aut, cre]
Maintainer: Jose Gamarra-Moncayo <gamarramoncayoj@gmail.com>
Diff between PsychoMatic versions 1.0.0 dated 2026-10-23 and 1.0.1 dated 2026-10-24
DESCRIPTION | 6 MD5 | 18 NEWS.md | 12 README.md | 515 +------------------------ tests/testthat/helper-report-paths.R |only tests/testthat/test-invariance-partial.R | 2 tests/testthat/test-report-default-directory.R | 18 tests/testthat/test-report-path-identity.R |only tests/testthat/test-reporting-audit.R | 2 tests/testthat/test-reporting-regressions.R | 2 tests/testthat/test-scoring-correlations.R | 6 11 files changed, 79 insertions(+), 502 deletions(-)
Title: Uncertainty Analysis in Dynamic Site and Slope Response
Description: Estimates the seismic response of sites and slopes from the
results of a seismic hazard analysis. For a site, it computes the
fundamental period of the soil profile and the amplification of
spectral acceleration. For a slope, it computes the fundamental
period, the earthquake-induced displacement, and the pseudostatic
coefficient that keeps a selected quantile of the displacement
within a given limit. Uncertainty in the soil profile and in the
ground motion is represented by Monte Carlo samples. Every result is
reported with its representative value, its applicable quantiles or
dispersion, and the population or conditioning to which it refers.
Author: Alejandro Verri Kozlowski [aut, cre, cph]
Maintainer: Alejandro Verri Kozlowski <averri@fi.uba.ar>
Diff between newmark versions 1.3.0 dated 2026-07-16 and 1.9.0 dated 2026-10-24
newmark-1.3.0/newmark/R/CylinderRoots.R |only newmark-1.3.0/newmark/R/Dn_models.R |only newmark-1.3.0/newmark/R/F_models.R |only newmark-1.3.0/newmark/R/SIDtoVs30.R |only newmark-1.3.0/newmark/R/ShearModelParameters.R |only newmark-1.3.0/newmark/R/SiteClass.R |only newmark-1.3.0/newmark/R/SiteTable.R |only newmark-1.3.0/newmark/R/Vs30toSID.R |only newmark-1.3.0/newmark/R/approx.spline.R |only newmark-1.3.0/newmark/R/buildGMDP.R |only newmark-1.3.0/newmark/R/buildQSpline.R |only newmark-1.3.0/newmark/R/checkUHS.R |only newmark-1.3.0/newmark/R/designUHS.R |only newmark-1.3.0/newmark/R/dsra_utils.R |only newmark-1.3.0/newmark/R/fitDnCurve.R |only newmark-1.3.0/newmark/R/fitDnModel.R |only newmark-1.3.0/newmark/R/fitModel.Ts.R |only newmark-1.3.0/newmark/R/fitSaF.R |only newmark-1.3.0/newmark/R/fitSaFMixture.R |only newmark-1.3.0/newmark/R/fitScenarios.R |only newmark-1.3.0/newmark/R/geSiteTable.R |only newmark-1.3.0/newmark/R/getCylinderRoots.R |only newmark-1.3.0/newmark/R/getDnKy.R |only newmark-1.3.0/newmark/R/getKyLimits.R |only newmark-1.3.0/newmark/R/getSiteProperties.R |only newmark-1.3.0/newmark/R/interpolateSaTable.R |only newmark-1.3.0/newmark/R/invertDnDraws.R |only newmark-1.3.0/newmark/R/local_vars.R |only newmark-1.3.0/newmark/R/probabilityTransforms.R |only newmark-1.3.0/newmark/R/rhoBJ.R |only newmark-1.3.0/newmark/R/sampleSaCorr.R |only newmark-1.3.0/newmark/build/vignette.rds |only newmark-1.3.0/newmark/data/SiteTable.rda |only newmark-1.3.0/newmark/inst/CITATION |only newmark-1.3.0/newmark/inst/WORDLIST |only newmark-1.3.0/newmark/inst/doc |only newmark-1.3.0/newmark/inst/extdata/uhs.csv |only newmark-1.3.0/newmark/man/Dn_AM88.Rd |only newmark-1.3.0/newmark/man/Dn_BM17.Rd |only newmark-1.3.0/newmark/man/Dn_BM19.Rd |only newmark-1.3.0/newmark/man/Dn_BT07.Rd |only newmark-1.3.0/newmark/man/Dn_JB07.Rd |only newmark-1.3.0/newmark/man/Dn_SR08.Rd |only newmark-1.3.0/newmark/man/F_ST17.Rd |only newmark-1.3.0/newmark/man/F_ST20.Rd |only newmark-1.3.0/newmark/man/SIDtoVs30.Rd |only newmark-1.3.0/newmark/man/SaF_ST17.Rd |only newmark-1.3.0/newmark/man/SiteTable.Rd |only newmark-1.3.0/newmark/man/Vs30toSID.Rd |only newmark-1.3.0/newmark/man/approx.spline.Rd |only newmark-1.3.0/newmark/man/buildGMDP.Rd |only newmark-1.3.0/newmark/man/buildQSpline.Rd |only newmark-1.3.0/newmark/man/checkUHS.Rd |only newmark-1.3.0/newmark/man/designUHS.Rd |only newmark-1.3.0/newmark/man/fitDnCurve.Rd |only newmark-1.3.0/newmark/man/fitDnModel.Rd |only newmark-1.3.0/newmark/man/fitDnScenario.Rd |only newmark-1.3.0/newmark/man/fitDnScenarios.Rd |only newmark-1.3.0/newmark/man/fitKmaxScenario.Rd |only newmark-1.3.0/newmark/man/fitKmaxScenarios.Rd |only newmark-1.3.0/newmark/man/fitModel.Ts.Rd |only newmark-1.3.0/newmark/man/fitSaF.Rd |only newmark-1.3.0/newmark/man/fitSaFMixture.Rd |only newmark-1.3.0/newmark/man/geSiteTable.Rd |only newmark-1.3.0/newmark/man/getCylinderRoots.Rd |only newmark-1.3.0/newmark/man/getDnKy.Rd |only newmark-1.3.0/newmark/man/getKyLimits.Rd |only newmark-1.3.0/newmark/man/getSiteProperties.Rd |only newmark-1.3.0/newmark/man/interpolateSaTable.Rd |only newmark-1.3.0/newmark/man/invertDnDraws.Rd |only newmark-1.3.0/newmark/man/rhoBJ.Rd |only newmark-1.3.0/newmark/man/sampleSaCorr.Rd |only newmark-1.3.0/newmark/vignettes |only newmark-1.9.0/newmark/DESCRIPTION | 50 - newmark-1.9.0/newmark/LICENSE | 2 newmark-1.9.0/newmark/MD5 | 259 ++++++--- newmark-1.9.0/newmark/NAMESPACE | 114 ++-- newmark-1.9.0/newmark/NEWS.md | 312 ++---------- newmark-1.9.0/newmark/R/assembleDnTables.R |only newmark-1.9.0/newmark/R/assembleKmaxTables.R |only newmark-1.9.0/newmark/R/buildDnTables.R |only newmark-1.9.0/newmark/R/buildGeometry.R |only newmark-1.9.0/newmark/R/buildKmaxTable.R |only newmark-1.9.0/newmark/R/buildKyGrid.R |only newmark-1.9.0/newmark/R/buildKyLimits.R |only newmark-1.9.0/newmark/R/buildPGATable.R |only newmark-1.9.0/newmark/R/buildQuantileSpline.R |only newmark-1.9.0/newmark/R/buildRootModel.R |only newmark-1.9.0/newmark/R/buildShearTable.R |only newmark-1.9.0/newmark/R/characterizeProfile.R |only newmark-1.9.0/newmark/R/classifySite.R |only newmark-1.9.0/newmark/R/convertAEP.R |only newmark-1.9.0/newmark/R/correlateResiduals.R |only newmark-1.9.0/newmark/R/data.R |only newmark-1.9.0/newmark/R/describeModule.R |only newmark-1.9.0/newmark/R/estimateAI.R |only newmark-1.9.0/newmark/R/estimatePGV.R |only newmark-1.9.0/newmark/R/estimateRayleighPeriod.R |only newmark-1.9.0/newmark/R/estimateVS30.R |only newmark-1.9.0/newmark/R/estimateWeightedRayleighPeriod.R |only newmark-1.9.0/newmark/R/evaluateBeamPeriod.R |only newmark-1.9.0/newmark/R/evaluateDisplacements.R |only newmark-1.9.0/newmark/R/evaluateFlexibleDisplacement.R |only newmark-1.9.0/newmark/R/evaluateRigidDisplacement.R |only newmark-1.9.0/newmark/R/evaluateRoot.R |only newmark-1.9.0/newmark/R/evaluateSiteFactor.R |only newmark-1.9.0/newmark/R/evaluateSiteSa.R |only newmark-1.9.0/newmark/R/evaluateSoilLayers.R |only newmark-1.9.0/newmark/R/evaluateUniformHazard.R |only newmark-1.9.0/newmark/R/integrateSiteMixture.R |only newmark-1.9.0/newmark/R/integrateSiteSpectrum.R |only newmark-1.9.0/newmark/R/interpolateSpectrum.R |only newmark-1.9.0/newmark/R/listProjectTables.R |only newmark-1.9.0/newmark/R/newmark-package.R |only newmark-1.9.0/newmark/R/processProject.R |only newmark-1.9.0/newmark/R/propagateBeamPeriod.R |only newmark-1.9.0/newmark/R/propagateSitePeriod.R |only newmark-1.9.0/newmark/R/queryProjectTable.R |only newmark-1.9.0/newmark/R/readHazardWorkbook.R |only newmark-1.9.0/newmark/R/refineSiteMixture.R |only newmark-1.9.0/newmark/R/refineSiteSpectrum.R |only newmark-1.9.0/newmark/R/sampleIntensities.R |only newmark-1.9.0/newmark/R/sampleSoilLayers.R |only newmark-1.9.0/newmark/R/sampleSpectra.R |only newmark-1.9.0/newmark/R/selectDisplacementModels.R |only newmark-1.9.0/newmark/R/simulateSiteSpectrum.R |only newmark-1.9.0/newmark/R/simulateSoilProfiles.R |only newmark-1.9.0/newmark/R/solveColumnPeriod.R |only newmark-1.9.0/newmark/R/solveKmax.R |only newmark-1.9.0/newmark/R/solveProfilePeriods.R |only newmark-1.9.0/newmark/R/solveShearBeam.R |only newmark-1.9.0/newmark/R/solveWedgePeriod.R |only newmark-1.9.0/newmark/R/summarizeDisplacements.R |only newmark-1.9.0/newmark/R/summarizeEnsemble.R |only newmark-1.9.0/newmark/R/summarizeKmax.R |only newmark-1.9.0/newmark/R/summarizeMixture.R |only newmark-1.9.0/newmark/R/summarizeProfiles.R |only newmark-1.9.0/newmark/R/weightedQuantile.R |only newmark-1.9.0/newmark/README.md | 125 +--- newmark-1.9.0/newmark/build/partial.rdb |only newmark-1.9.0/newmark/data/CylinderRoots.rda |binary newmark-1.9.0/newmark/inst/api |only newmark-1.9.0/newmark/inst/extdata/hazardWorkbook.xlsx |only newmark-1.9.0/newmark/man/CylinderRoots.Rd | 33 - 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Title: Retention Time Prediction in Liquid Chromatography
Description: A framework for predicting retention times in liquid
chromatography. Users can train custom models for specific
chromatography columns, predict retention times using existing models,
or adjust existing models to account for altered experimental
conditions. The provided functionalities can be accessed either via
the R console or via a graphical user interface. For details see
Fadil et al. (2026) <doi:10.1021/acs.jcim.6c01344>. Related work:
Bonini et al. (2020) <doi:10.1021/acs.analchem.9b05765>.
Author: Tobias Schmidt [aut, cre, cph] ,
Christian Amesoeder [aut, cph] ,
Marian Schoen [aut, cph],
Fadi Fadil [aut, cph] ,
Katja Dettmer [aut, cph] ,
Peter Oefner [ths, cph]
Maintainer: Tobias Schmidt <tobias.schmidt331@gmail.com>
Diff between FastRet versions 1.3.0 dated 2025-12-17 and 1.5.2 dated 2026-10-24
FastRet-1.3.0/FastRet/inst/cachedata/CDs.rds |only FastRet-1.3.0/FastRet/inst/extdata/Measurements_v8.xlsx |only FastRet-1.5.2/FastRet/DESCRIPTION | 35 FastRet-1.5.2/FastRet/MD5 | 72 - FastRet-1.5.2/FastRet/NEWS.md | 333 ++++++- FastRet-1.5.2/FastRet/R/app.R | 14 FastRet-1.5.2/FastRet/R/benchmark.R |only FastRet-1.5.2/FastRet/R/data.R | 26 FastRet-1.5.2/FastRet/R/getcds.R | 253 ++++- FastRet-1.5.2/FastRet/R/prepro.R | 8 FastRet-1.5.2/FastRet/R/server.R | 191 +++- FastRet-1.5.2/FastRet/R/sm.R | 69 - FastRet-1.5.2/FastRet/R/train.R | 475 +++++++--- FastRet-1.5.2/FastRet/R/ui.R | 507 ++++++----- FastRet-1.5.2/FastRet/README.md | 31 FastRet-1.5.2/FastRet/data/RP.rda |binary FastRet-1.5.2/FastRet/inst/CITATION |only FastRet-1.5.2/FastRet/inst/WORDLIST | 22 FastRet-1.5.2/FastRet/inst/cachedata/CDs.sqlite |only FastRet-1.5.2/FastRet/inst/extdata/RP.xlsx |binary FastRet-1.5.2/FastRet/inst/extdata/RP_adj.xlsx |binary FastRet-1.5.2/FastRet/inst/extdata/RP_lasso_model.rds |binary FastRet-1.5.2/FastRet/man/RP.Rd | 5 FastRet-1.5.2/FastRet/man/adjust_frm.Rd | 33 FastRet-1.5.2/FastRet/man/getCDs.Rd | 9 FastRet-1.5.2/FastRet/man/predict.frm.Rd | 4 FastRet-1.5.2/FastRet/man/preprocess_data.Rd | 6 FastRet-1.5.2/FastRet/man/read_rp_xlsx.Rd | 2 FastRet-1.5.2/FastRet/man/read_rpadj_xlsx.Rd | 10 FastRet-1.5.2/FastRet/man/selective_measuring.Rd | 14 FastRet-1.5.2/FastRet/man/train_frm.Rd | 17 FastRet-1.5.2/FastRet/tests/testthat/Rplots.pdf |only FastRet-1.5.2/FastRet/tests/testthat/apps |only FastRet-1.5.2/FastRet/tests/testthat/setup.R |only FastRet-1.5.2/FastRet/tests/testthat/test-adjust_frm.R | 82 + FastRet-1.5.2/FastRet/tests/testthat/test-getCDs.R | 69 - FastRet-1.5.2/FastRet/tests/testthat/test-get_param_grid.R | 17 FastRet-1.5.2/FastRet/tests/testthat/test-gui-e2e.R |only FastRet-1.5.2/FastRet/tests/testthat/test-predict_frm.R | 35 FastRet-1.5.2/FastRet/tests/testthat/test-read_input_xlsx.R |only FastRet-1.5.2/FastRet/tests/testthat/test-read_rpadj_xlsx.R | 7 FastRet-1.5.2/FastRet/tests/testthat/test-train_frm-gbtree.R | 28 42 files changed, 1723 insertions(+), 651 deletions(-)
Title: Explicitly Qualifying Namespaces by Automatically Adding 'pkg::'
to Functions
Description: Automatically adding 'pkg::' to a function, i.e. mutate()
becomes dplyr::mutate(). It is up to the user to determine which
packages should be used explicitly, whether to include base R packages
or use the functionality on selected text, a file, or a complete
directory. User friendly logging is provided in the 'RStudio' Markers
pane. Lives in the spirit of 'lintr' and 'styler'. Can also be used
for checking which packages are actually used in a project.
Author: Matthias Braun FKA Nistler [aut, cre]
Maintainer: Matthias Braun FKA Nistler <m_nistler@web.de>
Diff between origin versions 1.2.1 dated 2026-01-18 and 1.2.2 dated 2026-10-24
DESCRIPTION | 8 +-- MD5 | 14 +++--- NAMESPACE | 36 +++++++++------- NEWS.md | 6 ++ build/vignette.rds |binary man/origin-package.Rd | 5 ++ tests/testthat/test-originize_wrap.R | 62 ++++++++++++++--------------- tests/testthat/test-revert_parse_data.R | 68 +++++++++++++++++++++++++++++--- 8 files changed, 135 insertions(+), 64 deletions(-)
Title: Tightens an Observational Block Design by Balanced Subset
Matching
Description: Tightens an observational block design into a smaller design with either smaller or fewer blocks while controlling for covariates (Rosenbaum 2025 <doi:10.1080/00031305.2024.2393630>). The method uses fine balance, optimal subset matching (Rosenbaum, 2012 <doi:10.1198/jcgs.2011.09219>) and two-criteria matching (Zhang et al 2023 <doi:10.1080/01621459.2021.1981337>). The main function is tighten(). The suggested 'rrelaxiv' package for solving minimum cost flow problems: (i) derives from Bertsekas and Tseng (1988) <doi:10.1007/BF02288322>, (ii) is not available on CRAN due to its academic license, (iii) may be downloaded from GitHub at <https://github.com/josherrickson/rrelaxiv/>, (iv) is not essential to use the package.
Author: Paul Rosenbaum [aut, cre]
Maintainer: Paul Rosenbaum <rosenbaum@wharton.upenn.edu>
Diff between tightenBlock versions 0.1.7 dated 2023-12-15 and 0.1.8 dated 2026-10-24
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/partial.rdb |binary man/aHDLt.Rd | 6 +++--- man/makematch.Rd | 8 ++++---- man/makenetwork.Rd | 8 ++++---- man/tighten.Rd | 4 ++-- man/tightenBlock-package.Rd | 4 ++-- 8 files changed, 26 insertions(+), 26 deletions(-)
Title: Forensic STR Map and Allele Frequencies
Description: A marker map for 51 forensic short tandem repeat (STR) markers,
and allele frequency databases for Norway and several broader regional
populations: Europe, Africa, South America, West Asia, Middle Asia,
and East Asia. Developed and maintained for use at the Department of
Forensic Sciences, Oslo, Norway.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between norSTR versions 0.2.1 dated 2025-05-05 and 0.3.1 dated 2026-10-24
norSTR-0.2.1/norSTR/R/map50.R |only norSTR-0.2.1/norSTR/man/map50.Rd |only norSTR-0.3.1/norSTR/DESCRIPTION | 14 - norSTR-0.3.1/norSTR/MD5 | 56 ++++--- norSTR-0.3.1/norSTR/NAMESPACE | 1 norSTR-0.3.1/norSTR/NEWS.md | 17 ++ norSTR-0.3.1/norSTR/R/data.R | 82 +++++++---- norSTR-0.3.1/norSTR/R/maps.R |only norSTR-0.3.1/norSTR/R/markerSets.R | 20 +- norSTR-0.3.1/norSTR/R/utils.R |only norSTR-0.3.1/norSTR/README.md | 208 ++++++++++++++++++---------- norSTR-0.3.1/norSTR/build |only norSTR-0.3.1/norSTR/data/africaDB.rda |binary norSTR-0.3.1/norSTR/data/eastAsiaDB.rda |binary norSTR-0.3.1/norSTR/data/europeDB.rda |binary norSTR-0.3.1/norSTR/data/map50.rda |binary norSTR-0.3.1/norSTR/data/map51.rda |only norSTR-0.3.1/norSTR/data/markerSets.rda |binary norSTR-0.3.1/norSTR/data/midAsiaDB.rda |binary norSTR-0.3.1/norSTR/data/norwayDB.rda |binary norSTR-0.3.1/norSTR/data/southAmericaDB.rda |binary norSTR-0.3.1/norSTR/data/westAsiaDB.rda |binary norSTR-0.3.1/norSTR/man/africaDB.Rd | 12 + norSTR-0.3.1/norSTR/man/eastAsiaDB.Rd | 14 + norSTR-0.3.1/norSTR/man/europeDB.Rd | 13 + norSTR-0.3.1/norSTR/man/legacyAPO.Rd |only norSTR-0.3.1/norSTR/man/maps.Rd |only norSTR-0.3.1/norSTR/man/markerSets.Rd | 20 +- norSTR-0.3.1/norSTR/man/midAsiaDB.Rd | 12 + norSTR-0.3.1/norSTR/man/norSTR-package.Rd | 9 - norSTR-0.3.1/norSTR/man/norwayDB.Rd | 12 + norSTR-0.3.1/norSTR/man/southAmericaDB.Rd | 14 + norSTR-0.3.1/norSTR/man/westAsiaDB.Rd | 12 + 33 files changed, 334 insertions(+), 182 deletions(-)
Title: Graph Release with Assured Node Differential Privacy
Description: Implements a novel method for privatizing network data using differential privacy. Provides functions for generating synthetic networks based on LSM (Latent Space Model), applying differential privacy to network latent positions to achieve overall network privatization, and evaluating the utility of privatized networks through various network statistics. The privatize and evaluate functions support both LSM and RDPG (Random Dot Product Graph). For generating RDPG networks, users are encouraged to use the 'randnet' package <https://CRAN.R-project.org/package=randnet>. For more details, see the "proposed method" section of Liu, Bi, and Li (2025) <doi:10.48550/arXiv.2507.00402>.
Author: Suqing Liu [aut, cre],
Xuan Bi [aut],
Tianxi Li [aut]
Maintainer: Suqing Liu <liusuqing0123@uchicago.edu>
Diff between GRANDpriv versions 0.1.3 dated 2025-08-22 and 0.2.0 dated 2026-10-24
DESCRIPTION | 10 +- MD5 | 18 ++-- NAMESPACE | 52 ++++++-------- R/DIP.R | 8 +- R/GRAND.R | 16 ++-- README.md | 7 + build/partial.rdb |binary man/GRAND.evaluate.Rd | 124 ++++++++++++++++----------------- man/GRAND.privatize.Rd | 182 ++++++++++++++++++++++++------------------------- man/LSM.Gen.Rd | 132 +++++++++++++++++------------------ 10 files changed, 276 insertions(+), 273 deletions(-)
Title: Analysis of Semi-Competing Risks Data Using Copula-Based Models
Description: Simulate and analyze Semi-competing Risks Data using
copula-based models. The Semi-competing Risks Data consist of a
terminal event time and single or multiple intermediate event times.
The marginal survival functions of these event times are estimated
without parametric assumptions. The association parameters measuring dependency
among these event times involving the copula model are yielded from
solving a concordance estimating equations or maximizing a
pseudo-likelihood function. Details can be found in the article by
Tonghui Yu and Liming Xiang (2026) <doi:10.1093/biomtc/ujag087>.
Author: Tonghui Yu [aut, cre] ,
Binhui Zhang [aut]
Maintainer: Tonghui Yu <tonghui_yu@126.com>
Diff between CopulaSCR versions 1.0.2 dated 2026-08-21 and 1.0.4 dated 2026-10-24
CopulaSCR-1.0.2/CopulaSCR/man/association_estimates.Rd |only CopulaSCR-1.0.4/CopulaSCR/DESCRIPTION | 27 CopulaSCR-1.0.4/CopulaSCR/MD5 | 75 +- CopulaSCR-1.0.4/CopulaSCR/NAMESPACE | 11 CopulaSCR-1.0.4/CopulaSCR/R/CopulaSCR-package.R | 20 CopulaSCR-1.0.4/CopulaSCR/R/accessors.R | 340 +++++++++- CopulaSCR-1.0.4/CopulaSCR/R/data-doc.R | 12 CopulaSCR-1.0.4/CopulaSCR/R/methods.R |only CopulaSCR-1.0.4/CopulaSCR/R/plot.R | 186 +++++ CopulaSCR-1.0.4/CopulaSCR/R/plotBS.R | 8 CopulaSCR-1.0.4/CopulaSCR/R/predict.R | 14 CopulaSCR-1.0.4/CopulaSCR/R/predictscr.R | 3 CopulaSCR-1.0.4/CopulaSCR/R/print.R | 101 ++ CopulaSCR-1.0.4/CopulaSCR/R/run_app.R |only CopulaSCR-1.0.4/CopulaSCR/R/scrasso.R | 4 CopulaSCR-1.0.4/CopulaSCR/R/scrsurv.R | 12 CopulaSCR-1.0.4/CopulaSCR/R/summary.R | 217 +++++- CopulaSCR-1.0.4/CopulaSCR/README.md | 12 CopulaSCR-1.0.4/CopulaSCR/data/mSCRdata.rda |binary CopulaSCR-1.0.4/CopulaSCR/inst |only CopulaSCR-1.0.4/CopulaSCR/man/CopulaSCR-package.Rd | 9 CopulaSCR-1.0.4/CopulaSCR/man/as.data.frame.summary.scrsurv.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/association_estimates.mscr.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/association_estimates.scrassonp.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/coef.scrassonp.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/confint.scrassonp.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/dyBS.Rd | 8 CopulaSCR-1.0.4/CopulaSCR/man/logLik.mscr.Rd | 7 CopulaSCR-1.0.4/CopulaSCR/man/mSCRdata.Rd | 11 CopulaSCR-1.0.4/CopulaSCR/man/mimiv_demo.Rd | 62 - CopulaSCR-1.0.4/CopulaSCR/man/model.frame.scrassonp.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/mscr-methods.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/nobs.scrassonp.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/plot.mscr.Rd | 17 CopulaSCR-1.0.4/CopulaSCR/man/predict.mscr.Rd | 4 CopulaSCR-1.0.4/CopulaSCR/man/predict.scrsurv.Rd | 3 CopulaSCR-1.0.4/CopulaSCR/man/predictscr.Rd | 3 CopulaSCR-1.0.4/CopulaSCR/man/print.predmscr.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/print.summary.mscr.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/print.summary.scrsurv.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/run_app.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/scrassonp-methods.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/scrsurv-methods.Rd |only CopulaSCR-1.0.4/CopulaSCR/man/scrsurv.Rd | 3 CopulaSCR-1.0.4/CopulaSCR/man/vcov.scrassonp.Rd |only 45 files changed, 948 insertions(+), 221 deletions(-)
Title: Seamless AWS Cloud Bursting for Parallel R Workloads
Description: A 'future' backend that enables seamless execution of parallel R
workloads on 'Amazon Web Services' ('AWS', <https://aws.amazon.com>),
including 'EC2' and 'Fargate'. 'staRburst' handles environment
synchronization, data transfer, quota management, and worker orchestration
automatically, allowing users to scale from local execution to 100+ cloud
workers with a single line of code change.
Author: Scott Friedman [aut, cre]
Maintainer: Scott Friedman <help@starburst.ing>
Diff between starburst versions 0.3.9 dated 2026-07-22 and 0.3.10 dated 2026-10-24
DESCRIPTION | 6 ++-- MD5 | 38 +++++++++++++++--------------- NEWS.md | 16 ++++++++++++ README.md | 9 +++++-- inst/doc/detached-sessions.html | 3 -- inst/doc/example-api-calls.html | 3 -- inst/doc/example-bootstrap.html | 3 -- inst/doc/example-feature-engineering.html | 3 -- inst/doc/example-geospatial.html | 3 -- inst/doc/example-grid-search.html | 3 -- inst/doc/example-monte-carlo.html | 3 -- inst/doc/example-reports.html | 3 -- inst/doc/example-risk-modeling.html | 3 -- inst/doc/getting-started.html | 3 -- inst/doc/performance.html | 3 -- inst/doc/security.html | 3 -- inst/doc/troubleshooting.html | 3 -- inst/doc/workload-shapes.html | 3 -- inst/templates/Dockerfile.base | 20 ++++++++++++--- tests/testthat/test-detached-sessions.R | 5 +++ 20 files changed, 80 insertions(+), 56 deletions(-)
Title: Bayesian Error Propagation and Forecast Uncertainty
Decomposition
Description: Provides a full pipeline from regularized or standard regression
models (elastic net, linear models, generalized linear models, random
forests) to informed Bayesian priors, structured forecast uncertainty
decomposition (parameter / environmental / residual, plus a temporal
component when the model carries an autocorrelation term), and forecast
shelf life analysis (the quantification of when a forecast becomes
uninformative). Designed for ecological and genomic forecasting with
climate or environmental covariates. Methods build on Bürkner (2017)
<doi:10.18637/jss.v080.i01> for Bayesian regression via 'Stan',
Friedman, Hastie, and Tibshirani (2010) <doi:10.18637/jss.v033.i01>
for elastic net regularization, Wright and Ziegler (2017)
<doi:10.18637/jss.v077.i01> for random forests, and Vehtari, Gelman,
and Gabry (2017) <doi:10.1007/s11222-016-9696-4> for leave-one-out
cross-validation.
Author: Luis Javier Madrigal-Roca [aut, cre],
John Kelly [aut]
Maintainer: Luis Javier Madrigal-Roca <madrigalrocalj@yahoo.com>
Diff between ErrorTracer versions 1.3.1 dated 2026-08-19 and 1.4.0 dated 2026-10-24
DESCRIPTION | 10 MD5 | 40 +- NEWS.md | 159 ++++++++ R/decompose.R | 62 ++- R/plot.R | 52 ++ R/predict.R | 473 ++++++++++++++++++++----- R/sensitivity.R | 5 R/shelf_life.R | 11 inst/doc/introduction.html | 14 inst/doc/worked_example.html | 14 man/decompose_uncertainty.Rd | 59 ++- man/et_plot_decomposition.Rd | 10 man/et_predict.Rd | 48 +- man/et_sensitivity_profile.Rd | 5 tests/testthat/helper.R | 50 ++ tests/testthat/test-decompose-families-truth.R | 95 ++++- tests/testthat/test-decompose-hierarchical.R | 16 tests/testthat/test-decompose.R | 49 ++ tests/testthat/test-draw-pairing.R |only tests/testthat/test-family-predictive.R |only tests/testthat/test-integration.R | 16 tests/testthat/test-shelf_life.R | 12 22 files changed, 984 insertions(+), 216 deletions(-)
More information about SurveySolutionsAPIv2 at CRAN
Permanent link
Title: GPU Drop-Ins for Statistics on Wide Data
Description: GPU versions of base R statistics for data with many
variables, using the NVIDIA 'CUDA' toolkit: correlation matrices
(Pearson, Spearman and Kendall) and their tests, the strongest
correlated pairs among tens of thousands of variables without forming
the matrix, association scans with covariates as in expression
quantitative trait loci studies (Shabalin 2012
<doi:10.1093/bioinformatics/bts163>), permutation tests with
Westfall-Young maxT adjustment, distance matrices, hierarchical and
k-means clustering, Granger causality tests, B-spline mutual
information, principal components, and least-squares fits. Results
agree with the base R functions they replace. Without 'CUDA' the
package installs, and its functions explain how to get a 'CUDA' build.
Described in Buckner et al. (2010) <doi:10.1093/bioinformatics/btp608>.
Author: Josh Buckner [aut, cre],
Mark Seligman [aut],
Fan Meng [aut],
Justin Wilson [ctb]
Maintainer: Josh Buckner <nullsatz@gmail.com>
This is a re-admission after prior archival of version 1.1 dated 2016-10-26
Diff between gputools versions 1.1 dated 2016-10-26 and 2.1.0 dated 2026-10-24
gputools-1.1/gputools/NEWS |only gputools-1.1/gputools/R/hooks.R |only gputools-1.1/gputools/src/Makefile.in |only gputools-1.1/gputools/src/correlation.cu |only gputools-1.1/gputools/src/cuseful.cu |only gputools-1.1/gputools/src/distance.cu |only gputools-1.1/gputools/src/granger.cu |only gputools-1.1/gputools/src/hcluster.cu |only gputools-1.1/gputools/src/kendall.cu |only gputools-1.1/gputools/src/lsfit.cu |only gputools-1.1/gputools/src/matmult.cu |only gputools-1.1/gputools/src/mi.cu |only gputools-1.1/gputools/src/qrdecomp.cu |only gputools-1.1/gputools/src/rinterface.cu |only gputools-1.1/gputools/src/sort.cu |only gputools-1.1/gputools/src/sort.h |only gputools-1.1/gputools/tools |only gputools-2.1.0/gputools/DESCRIPTION | 40 gputools-2.1.0/gputools/INSTALL | 51 gputools-2.1.0/gputools/MD5 | 207 - gputools-2.1.0/gputools/NAMESPACE | 12 gputools-2.1.0/gputools/NEWS.md |only gputools-2.1.0/gputools/R/chooseGpu.R | 3 gputools-2.1.0/gputools/R/getGpuId.R | 4 gputools-2.1.0/gputools/R/globals.R |only gputools-2.1.0/gputools/R/gpuAssoc.R |only gputools-2.1.0/gputools/R/gpuAvailable.R |only gputools-2.1.0/gputools/R/gpuCor.R | 360 -- gputools-2.1.0/gputools/R/gpuCorPairs.R |only gputools-2.1.0/gputools/R/gpuCorPerm.R |only gputools-2.1.0/gputools/R/gpuGranger.R | 66 gputools-2.1.0/gputools/R/gpuHclust.R | 214 - gputools-2.1.0/gputools/R/gpuKmeans.R |only gputools-2.1.0/gputools/R/gpuLm.R | 111 gputools-2.1.0/gputools/R/gpuMatMult.R | 8 gputools-2.1.0/gputools/R/gpuMi.R | 16 gputools-2.1.0/gputools/R/gpuQr.R | 19 gputools-2.1.0/gputools/R/gpuRowTtest.R |only gputools-2.1.0/gputools/R/gpuSolve.R | 47 gputools-2.1.0/gputools/R/gpuSvd.R |only gputools-2.1.0/gputools/R/precision.R |only gputools-2.1.0/gputools/R/zzz.R |only gputools-2.1.0/gputools/README.md |only gputools-2.1.0/gputools/build |only gputools-2.1.0/gputools/cleanup | 4 gputools-2.1.0/gputools/configure | 4027 ++++++++++++----------- gputools-2.1.0/gputools/configure.ac | 281 - gputools-2.1.0/gputools/inst/CITATION |only gputools-2.1.0/gputools/inst/cuda/correlation.cu |only gputools-2.1.0/gputools/inst/cuda/distance.cu |only gputools-2.1.0/gputools/inst/cuda/granger.cu |only gputools-2.1.0/gputools/inst/cuda/hcluster.cu |only gputools-2.1.0/gputools/inst/cuda/kendall.cu | 162 gputools-2.1.0/gputools/inst/cuda/kmeans.cu |only gputools-2.1.0/gputools/inst/cuda/mi.cu |only gputools-2.1.0/gputools/inst/cuda/pairs.cu |only gputools-2.1.0/gputools/inst/cuda/perm.cu |only gputools-2.1.0/gputools/inst/cuda/qrdecomp.cu |only gputools-2.1.0/gputools/inst/cuda/rank.cu |only gputools-2.1.0/gputools/inst/cuda/rowtest.cu |only gputools-2.1.0/gputools/inst/doc |only gputools-2.1.0/gputools/man/getGpuId.Rd | 2 gputools-2.1.0/gputools/man/gpuAssoc.Rd |only gputools-2.1.0/gputools/man/gpuAvailable.Rd |only gputools-2.1.0/gputools/man/gpuCor.Rd | 81 gputools-2.1.0/gputools/man/gpuCorPairs.Rd |only gputools-2.1.0/gputools/man/gpuCorPerm.Rd |only gputools-2.1.0/gputools/man/gpuCrossprod.Rd | 2 gputools-2.1.0/gputools/man/gpuDist.Rd | 9 gputools-2.1.0/gputools/man/gpuDistClust.Rd | 30 gputools-2.1.0/gputools/man/gpuGlm.Rd | 14 gputools-2.1.0/gputools/man/gpuGranger.Rd | 19 gputools-2.1.0/gputools/man/gpuHclust.Rd | 29 gputools-2.1.0/gputools/man/gpuKmeans.Rd |only gputools-2.1.0/gputools/man/gpuLm.Rd | 12 gputools-2.1.0/gputools/man/gpuLm.fit.Rd | 12 gputools-2.1.0/gputools/man/gpuLsfit.Rd | 10 gputools-2.1.0/gputools/man/gpuMatMult.Rd | 2 gputools-2.1.0/gputools/man/gpuMi.Rd | 11 gputools-2.1.0/gputools/man/gpuPrcomp.Rd |only gputools-2.1.0/gputools/man/gpuQr.Rd | 9 gputools-2.1.0/gputools/man/gpuRowTtest.Rd |only gputools-2.1.0/gputools/man/gpuSolve.Rd | 36 gputools-2.1.0/gputools/man/gpuSvd.Rd |only gputools-2.1.0/gputools/man/gpuTcrossprod.Rd | 2 gputools-2.1.0/gputools/man/gpuTtest.Rd | 9 gputools-2.1.0/gputools/src/Makevars.in |only gputools-2.1.0/gputools/src/Makevars.win |only gputools-2.1.0/gputools/src/correlation.cpp |only gputools-2.1.0/gputools/src/correlation.h | 43 gputools-2.1.0/gputools/src/cudaUtils.cpp |only gputools-2.1.0/gputools/src/cudaUtils.h |only gputools-2.1.0/gputools/src/cuseful.cpp |only gputools-2.1.0/gputools/src/cuseful.h | 8 gputools-2.1.0/gputools/src/distance.cpp |only gputools-2.1.0/gputools/src/distance.h | 35 gputools-2.1.0/gputools/src/gpublas.h |only gputools-2.1.0/gputools/src/gpusolver.h |only gputools-2.1.0/gputools/src/granger.cpp |only gputools-2.1.0/gputools/src/granger.h | 20 gputools-2.1.0/gputools/src/hcluster.cpp |only gputools-2.1.0/gputools/src/hcluster.h | 30 gputools-2.1.0/gputools/src/kendall.cpp |only gputools-2.1.0/gputools/src/kendall.h | 16 gputools-2.1.0/gputools/src/kmeans.cpp |only gputools-2.1.0/gputools/src/kmeans.h |only gputools-2.1.0/gputools/src/lsfit.cpp |only gputools-2.1.0/gputools/src/lsfit.h | 21 gputools-2.1.0/gputools/src/matmult.cpp |only gputools-2.1.0/gputools/src/mi.cpp |only gputools-2.1.0/gputools/src/mi.h | 12 gputools-2.1.0/gputools/src/nocuda-reason.h.in |only gputools-2.1.0/gputools/src/nocuda.cpp |only gputools-2.1.0/gputools/src/pairs.cpp |only gputools-2.1.0/gputools/src/pairs.h |only gputools-2.1.0/gputools/src/perm.cpp |only gputools-2.1.0/gputools/src/perm.h |only gputools-2.1.0/gputools/src/qrdecomp.cpp |only gputools-2.1.0/gputools/src/qrdecomp.h | 23 gputools-2.1.0/gputools/src/rank.cpp |only gputools-2.1.0/gputools/src/rank.h |only gputools-2.1.0/gputools/src/rinterface.cpp |only gputools-2.1.0/gputools/src/rinterface.h | 105 gputools-2.1.0/gputools/src/routines.h |only gputools-2.1.0/gputools/src/rowtest.cpp |only gputools-2.1.0/gputools/src/rowtest.h |only gputools-2.1.0/gputools/src/solve.cpp |only gputools-2.1.0/gputools/src/solve.h |only gputools-2.1.0/gputools/tests |only gputools-2.1.0/gputools/vignettes |only 130 files changed, 3420 insertions(+), 2814 deletions(-)
Title: Deconvolution, Alignment and Model Fitting of 1d NMR Spectra
Description: An integrated framework for deconvolution, alignment and
postprocessing of 1-dimensional (1d) nuclear magnetic resonance (NMR)
spectra, extended with end-to-end model fitting that turns the resulting
matrix of aligned signal integrals into classification models. The
deconvolution part uses the algorithm described in Koh et al. (2009)
<doi:10.1016/j.jmr.2009.09.003>. The alignment part is based on functions
from the 'speaq' package, described in Beirnaert et al. (2018)
<doi:10.1371/journal.pcbi.1006018> and Vu et al. (2011)
<doi:10.1186/1471-2105-12-405>. A detailed description and evaluation of an
early version of the package can be found in Haeckl
et al. (2021) <doi:10.3390/metabo11070452>. The current package, including
the model fitting workflow, is described in Schmidt et al. (2026)
<doi:10.3390/metabo16090604>. 'metabodeconplus' is the
actively developed successor to the 'metabodecon' package and introduces
backwards-incompatible API changes.
Author: Tobias Schmidt [aut, cre, cph],
Martina Haeckl [aut, cph],
Yanren Linda Hu [ctb],
Wolfram Gronwald [aut, cph]
Maintainer: Tobias Schmidt <tobias.schmidt331@gmail.com>
Diff between metabodeconplus versions 0.22.0 dated 2026-08-09 and 0.22.4 dated 2026-10-24
DESCRIPTION | 10 ++++--- MD5 | 47 ++++++++++++++++++------------------ NEWS.md | 41 +++++++++++++++++++++++++++++++ R/align.R | 5 +++ R/class.R | 4 +-- R/decon.R | 53 +++++++++++++++++++++++++++-------------- R/experimental.R | 26 ++++++++++++++++++++ R/mdm.R | 20 ++++++++++----- R/test.R | 3 -- R/util.R | 4 +-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/WORDLIST | 23 +++++++++++++++++ inst/doc/Get_Started.Rmd | 4 +-- inst/doc/Get_Started.html | 14 +++++----- inst/doc/MDM.Rmd | 4 +-- inst/doc/MDM.html | 23 +++++++++-------- man/aaa_Get_Started.Rd | 4 +-- man/mdm.Rd | 2 - man/metabodeconplus-classes.Rd | 4 +-- man/metabodeconplus-package.Rd | 2 - tests/testthat/test-mdm.R | 19 ++++++++++++-- vignettes/Get_Started.Rmd | 4 +-- vignettes/MDM.Rmd | 4 +-- 25 files changed, 226 insertions(+), 94 deletions(-)
More information about metabodeconplus at CRAN
Permanent link
Title: G-means Clustering
Description: Gaussian-means (G-means) clustering is a clustering algorithm
that extends the k-means algorithm by automatically determining the
number of clusters.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between gmeans versions 0.2.0 dated 2026-09-11 and 0.3.0 dated 2026-10-24
DESCRIPTION | 12 - MD5 | 38 +++-- NAMESPACE | 5 NEWS.md | 14 + R/gmeans.R | 253 ++++++++++++++++++---------------- R/summary.R |only R/tidiers.R |only README.md | 51 ++---- inst/doc/introduction.R | 38 ----- inst/doc/introduction.Rmd | 66 +++------ inst/doc/introduction.html | 286 +++++++++++++++------------------------ man/ad.test.Rd | 30 +--- man/compute_wss.Rd | 16 -- man/gmeans.Rd | 57 ++++--- man/gmeans_tidiers.Rd |only man/predict.gmeans.Rd | 21 +- man/summary.gmeans.Rd |only tests/testthat/_snaps/gmeans.md | 32 ++++ tests/testthat/_snaps/summary.md |only tests/testthat/_snaps/tidiers.md |only tests/testthat/test-gmeans.R | 104 +++++++++++++- tests/testthat/test-summary.R |only tests/testthat/test-tidiers.R |only vignettes/introduction.Rmd | 66 +++------ 24 files changed, 560 insertions(+), 529 deletions(-)
Title: Exploratory Data Analysis, Group Comparison Tools, and Other
Procedures
Description: Provides a comprehensive set of tools for descriptive statistics,
graphical data exploration, outlier detection, homoscedasticity testing, and
multiple comparison procedures. Includes manual implementations of Levene's test,
Bartlett's test, and the Fligner-Killeen test, as well as post hoc comparison
methods such as Tukey, Scheffé, Games-Howell, Brunner-Munzel, and others.
This version introduces two new procedures: the Jonckheere-Terpstra trend test
and the Jarque-Bera test with Glinskiy's (2024) correction. Designed for use in
teaching, applied statistical analysis, and reproducible research.
Additionally you can find a post hoc Test Planner, which helps you to make a
decision on which procedure is most suitable.
Author: Carlos Jimenez-Gallardo [aut, cre]
Maintainer: Carlos Jimenez-Gallardo <carlos.jimenez@ufrontera.cl>
Diff between Analitica versions 2.2.0 dated 2025-12-03 and 2.3.0 dated 2026-10-24
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/BonferroniNPTest.R | 1 + R/descripYG.R | 3 +-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Analitica-intro.html | 4 ++-- 7 files changed, 14 insertions(+), 14 deletions(-)
Title: Non-Parametric Trend Tests and Change-Point Detection
Description: The analysis of environmental data often requires
the detection of trends and change-points.
This package includes tests for trend detection
(Cox-Stuart Trend Test, Mann-Kendall Trend Test,
(correlated) Hirsch-Slack Test,
partial Mann-Kendall Trend Test, multivariate (multisite)
Mann-Kendall Trend Test, (Seasonal) Sen's slope,
partial Pearson and Spearman correlation trend test),
change-point detection (Lanzante's test procedures,
Pettitt's test, Buishand Range Test,
Buishand U Test, Standard Normal Homogeinity Test),
detection of non-randomness (Wallis-Moore Phase Frequency Test,
Bartels rank von Neumann's ratio test, Wald-Wolfowitz Test)
and the two sample Robust Rank-Order Distributional Test.
Author: Thorsten Pohlert [aut, cre]
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between trend versions 1.1.9 dated 2026-10-12 and 1.1.10 dated 2026-10-24
DESCRIPTION | 8 +++--- MD5 | 14 +++++------ NAMESPACE | 1 R/itam.R | 66 +++++++++++++++++++++++++++++++++++------------------ inst/NEWS.Rd | 10 +++++++- inst/doc/trend.pdf |binary man/itam.Rd | 32 ++++++++++++++++++++----- man/plot.itam.Rd | 14 +++++++++++ 8 files changed, 105 insertions(+), 40 deletions(-)
Title: Gaussian Mixture Proxies for Densities and Characteristic
Functions
Description: Fits multivariate Gaussian-mixture proxies to target
distributions on real Euclidean space, given by a density, by samples,
or by a characteristic function. Four fitting regimes are unified under one verb:
(i) closed-form moment matching for a single component,
(ii) classical expectation-maximisation when independent samples are
available, (iii) importance-sampled expectation-maximisation that
minimises the Kullback-Leibler divergence when the target can be
evaluated point-wise but not (cheaply) sampled, and (iv) a least-squares
fit to the characteristic function when only that is known, with
numerical bounds on the Kolmogorov distance along one-dimensional
projections. Closed-form
Gaussian-mixture operators (density, sampling, marginalisation,
conditioning, divergence) round out the toolkit. The conditioning
operator drives multiple imputation of data missing at random,
covering the multimodal and heteroscedastic cases a single-Gaussian
model cannot represent. Implements the
regime hi [...truncated...]
Author: Max Moldovan [aut, cre] ,
John van der Hoek [aut]
Maintainer: Max Moldovan <max.moldovan@gmail.com>
Diff between proxymix versions 0.16.0 dated 2026-10-08 and 0.17.0 dated 2026-10-24
DESCRIPTION | 26 +-- MD5 | 238 ++++++++++++++++--------------- NAMESPACE | 8 + NEWS.md | 114 ++++++++++++++ R/accessors.R | 16 +- R/algebra.R | 4 R/cf_target.R |only R/diagnostics.R | 13 + R/fit_em_samples.R | 77 ++++++++-- R/fit_mppca_samples.R |only R/fit_proxymix.R | 44 ++++- R/from_cf.R |only R/from_cf_structured.R |only R/from_fb_posterior.R | 34 ++-- R/from_kde.R | 39 +++-- R/from_objective.R | 2 R/identification.R | 7 R/impute.R | 9 + R/impute_selection.R | 29 +++ R/init.R | 16 +- R/intervene.R | 113 +++++++------- R/proxymix-classes.R | 47 ++++-- R/select_n.R | 19 ++ R/stubs.R | 2 R/utils-internal.R | 17 +- R/zzz.R | 4 README.md | 94 ++++++++++-- build/vignette.rds |binary inst/CITATION | 2 inst/WORDLIST | 236 ++++++++++++++++++++++++++++++ inst/doc/calibration.html | 4 inst/doc/cf_targets.R |only inst/doc/cf_targets.Rmd |only inst/doc/cf_targets.html |only inst/doc/density_shapes.html | 30 ++- inst/doc/end_of_sample.html | 40 ++--- inst/doc/entropy.html | 38 ++-- inst/doc/from_kde.Rmd | 13 + inst/doc/from_kde.html | 79 +++++----- inst/doc/many_methods.html | 30 +-- inst/doc/missing_data.html | 46 ++--- inst/doc/missing_data_mnar.html | 46 ++--- inst/doc/operator_calculus.html | 60 +++---- inst/doc/posterior_proxy.html | 74 ++++----- inst/doc/quickstart.R | 9 - inst/doc/quickstart.Rmd | 20 +- inst/doc/quickstart.html | 77 +++++----- inst/doc/three_regimes.html | 54 +++---- inst/validation/contract-conformance.R | 18 -- man/banana_target.Rd | 1 man/bic_aic.Rd | 1 man/cf_target.Rd |only man/dgmm.Rd | 1 man/donut_target.Rd | 1 man/epanechnikov_target.Rd | 1 man/ess_summary.Rd | 1 man/ess_trace.Rd | 1 man/figures |only man/fit_em_samples.Rd | 14 + man/fit_kld_em.Rd | 4 man/fit_moment_match.Rd | 4 man/fit_mppca_samples.Rd |only man/fit_proxymix.Rd | 22 ++ man/from_cf.Rd |only man/from_cf_elliptical.Rd |only man/from_cf_sources.Rd |only man/from_kde.Rd | 22 ++ man/from_objective.Rd | 6 man/glance.gmm_fit.Rd | 10 + man/gmm_anneal_path.Rd | 1 man/gmm_canonicalise.Rd | 1 man/gmm_cf.Rd |only man/gmm_cf_distance.Rd |only man/gmm_cf_mean.Rd | 5 man/gmm_cf_tail_prob.Rd | 23 +- man/gmm_cf_variance.Rd | 26 +-- man/gmm_conditional_entropy.Rd | 1 man/gmm_conditionalise.Rd | 1 man/gmm_counterfactual.Rd | 13 + man/gmm_counterfactual_law.Rd | 12 - man/gmm_divergence.Rd | 1 man/gmm_entropy.Rd | 1 man/gmm_evidence.Rd | 1 man/gmm_fit.Rd | 2 man/gmm_fit_ensemble.Rd | 1 man/gmm_fit_quality.Rd | 14 + man/gmm_independence_graph.Rd | 1 man/gmm_kld.Rd | 1 man/gmm_marginalise.Rd | 1 man/gmm_mean.Rd | 1 man/gmm_modes.Rd | 1 man/gmm_mutual_information.Rd | 1 man/gmm_target.Rd | 18 +- man/gmm_target_from_samples.Rd | 1 man/hellinger_mc.Rd | 1 man/kld_trace.Rd | 1 man/maxent_target.Rd | 1 man/mixture_target.Rd | 1 man/pgmm.Rd | 1 man/proxy_functional_ci.Rd | 1 man/proxy_retrospective_uplift.Rd | 5 man/proxymix-package.Rd | 6 man/rgmm.Rd | 1 man/select_N.Rd | 7 tests/testthat.R | 4 tests/testthat/setup.R | 11 + tests/testthat/test-cf-target.R |only tests/testthat/test-fit-em-samples.R | 54 +++++++ tests/testthat/test-fit-mppca-samples.R |only tests/testthat/test-from-cf-structured.R |only tests/testthat/test-from-cf.R |only tests/testthat/test-from-kde.R | 23 ++ tests/testthat/test-impute-tails.R |only tests/testthat/test-init.R | 16 ++ tests/testthat/test-intervene.R | 44 ++++- tests/testthat/test-print-dispatch.R |only tests/testthat/test-reduce.R | 6 tests/testthat/test-uplift-audit.R | 8 - tests/testthat/test-uplift-coverage.R | 4 vignettes/cf_targets.Rmd |only vignettes/from_kde.Rmd | 13 + vignettes/quickstart.Rmd | 20 +- vignettes/results/end_of_sample.rds |binary vignettes/results/entropy.rds |binary vignettes/results/from_kde.rds |binary vignettes/results/missing_data.rds |binary vignettes/results/missing_data_mnar.rds |binary vignettes/results/operator_calculus.rds |binary vignettes/results/posterior_proxy.rds |binary vignettes/results/quickstart.rds |binary vignettes/results/three_regimes.rds |binary 131 files changed, 1639 insertions(+), 654 deletions(-)
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