Title: An Implementation of the PREVENT and Pooled Cohort Equations
Description: Implements the American Heart Association Predicting
Risk of cardiovascular disease EVENTs (PREVENT) equations from Khan
SS, Matsushita K, Sang Y, and colleagues (2023)
<doi:10.1161/CIRCULATIONAHA.123.067626>, with optional comparison
with their de facto predecessor, the Pooled Cohort Equations from the
American Heart Association and American College of Cardiology (2013)
<doi:10.1161/01.cir.0000437741.48606.98> and the revision to the Pooled
Cohort Equations from Yadlowsky and colleagues (2018)
<doi:10.7326/M17-3011>.
Author: Martin Mayer [aut, cre, cph]
Maintainer: Martin Mayer <mmayer@ebsco.com>
Diff between preventr versions 0.12.1 dated 2026-10-17 and 0.12.2 dated 2026-10-31
DESCRIPTION | 8 MD5 | 22 NEWS.md | 309 +- R/estimate_risk.R | 45 R/helpers.R | 38 R/sysdata.rda |binary README.md | 6 inst/doc/using-data-frame.html | 3406 ++++++++++++++++++--------------- man/estimate_risk.Rd | 45 tests/testthat/_snaps/estimate_risk.md | 28 tests/testthat/test-estimate_risk.R | 436 +++- tests/testthat/test-helpers.R | 12 12 files changed, 2492 insertions(+), 1863 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is 'parallel::makeCluster(type = "RPSOCK")', which is backward compatible with 'parallel::makeCluster()' while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph] ,
Mike Cheng [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.48.0 dated 2026-06-29 and 1.50.0 dated 2026-10-31
parallelly-1.48.0/parallelly/inst/test-data/cgroups1 |only parallelly-1.48.0/parallelly/inst/test-data/cgroups2 |only parallelly-1.48.0/parallelly/inst/test-data/mixed-cgroups |only parallelly-1.48.0/parallelly/inst/test-data/no-cgroups |only parallelly-1.50.0/parallelly/DESCRIPTION | 10 parallelly-1.50.0/parallelly/MD5 | 199 ++-- parallelly-1.50.0/parallelly/NAMESPACE | 36 parallelly-1.50.0/parallelly/NEWS.md | 185 ++++ parallelly-1.50.0/parallelly/R/000.import.R | 2 parallelly-1.50.0/parallelly/R/010.cli.R | 2 parallelly-1.50.0/parallelly/R/RichSOCKcluster.R | 3 parallelly-1.50.0/parallelly/R/as.cluster.R | 4 parallelly-1.50.0/parallelly/R/availableCores.R | 370 +++++++- parallelly-1.50.0/parallelly/R/availableWorkers.R | 115 ++ parallelly-1.50.0/parallelly/R/cgroups.R | 176 +++- parallelly-1.50.0/parallelly/R/isNodeAlive.R | 66 - parallelly-1.50.0/parallelly/R/killNode.R | 88 -- parallelly-1.50.0/parallelly/R/launchNodePSOCK.R | 8 parallelly-1.50.0/parallelly/R/makeClusterPSOCK.R | 70 + parallelly-1.50.0/parallelly/R/makeClusterSequential.R | 2 parallelly-1.50.0/parallelly/R/makeNodePSOCK.R | 73 + parallelly-1.50.0/parallelly/R/options.R | 21 parallelly-1.50.0/parallelly/R/ports.R | 16 parallelly-1.50.0/parallelly/R/stealth_sample.R | 2 parallelly-1.50.0/parallelly/R/supportsMulticore.R | 3 parallelly-1.50.0/parallelly/R/utils,cluster.R | 185 ++++ parallelly-1.50.0/parallelly/R/utils.R | 60 + parallelly-1.50.0/parallelly/R/workRPSOCK.R | 19 parallelly-1.50.0/parallelly/build/vignette.rds |binary parallelly-1.50.0/parallelly/inst/doc/parallelly-01-intro.html | 2 parallelly-1.50.0/parallelly/inst/doc/parallelly-01-intro.md | 2 parallelly-1.50.0/parallelly/inst/doc/parallelly-10-local-workers.html | 8 parallelly-1.50.0/parallelly/inst/doc/parallelly-10-local-workers.md | 8 parallelly-1.50.0/parallelly/inst/doc/parallelly-12-remote-workers.html | 36 parallelly-1.50.0/parallelly/inst/doc/parallelly-12-remote-workers.md | 36 parallelly-1.50.0/parallelly/inst/doc/parallelly-17-hpc-workers.html | 432 +++++++++- parallelly-1.50.0/parallelly/inst/doc/parallelly-17-hpc-workers.md | 273 ++++++ parallelly-1.50.0/parallelly/inst/doc/parallelly-21-container-workers.html | 30 parallelly-1.50.0/parallelly/inst/doc/parallelly-21-container-workers.md | 30 parallelly-1.50.0/parallelly/inst/doc/parallelly-22-wine-workers.html | 16 parallelly-1.50.0/parallelly/inst/doc/parallelly-22-wine-workers.md | 16 parallelly-1.50.0/parallelly/inst/doc/parallelly-25-sandbox-workers.html | 4 parallelly-1.50.0/parallelly/inst/doc/parallelly-25-sandbox-workers.md | 4 parallelly-1.50.0/parallelly/inst/test-data/cgroups |only parallelly-1.50.0/parallelly/inst/test-data/htcondor |only parallelly-1.50.0/parallelly/inst/test-data/sge |only parallelly-1.50.0/parallelly/inst/test-data/slurm |only parallelly-1.50.0/parallelly/inst/testme/_epilogue/999.detritus.R | 2 parallelly-1.50.0/parallelly/inst/testme/test-availableCores.R | 414 +++++++++ parallelly-1.50.0/parallelly/inst/testme/test-availableWorkers.R | 259 +++++ parallelly-1.50.0/parallelly/inst/testme/test-cgroups.R | 8 parallelly-1.50.0/parallelly/inst/testme/test-cli.R | 22 parallelly-1.50.0/parallelly/inst/testme/test-isNodeAlive.R | 20 parallelly-1.50.0/parallelly/inst/testme/test-killNode.R | 25 parallelly-1.50.0/parallelly/inst/testme/test-makeClusterPSOCK.R | 42 parallelly-1.50.0/parallelly/inst/testme/test-makeNodePSOCK.R | 151 +++ parallelly-1.50.0/parallelly/inst/testme/test-serializedSize.R | 8 parallelly-1.50.0/parallelly/inst/testme/test-utils.R | 20 parallelly-1.50.0/parallelly/inst/testme/test-workRPSOCK.R |only parallelly-1.50.0/parallelly/man/availableCores.Rd | 63 + parallelly-1.50.0/parallelly/man/availableWorkers.Rd | 44 - parallelly-1.50.0/parallelly/man/find_rshcmd.Rd | 6 parallelly-1.50.0/parallelly/man/freePort.Rd | 6 parallelly-1.50.0/parallelly/man/isConnectionValid.Rd | 8 parallelly-1.50.0/parallelly/man/isNodeAlive.Rd | 2 parallelly-1.50.0/parallelly/man/killNode.Rd | 2 parallelly-1.50.0/parallelly/man/makeClusterPSOCK.Rd | 68 + parallelly-1.50.0/parallelly/man/makeClusterSequential.Rd | 2 parallelly-1.50.0/parallelly/man/supportsMulticore.Rd | 2 parallelly-1.50.0/parallelly/man/workRPSOCK.Rd | 2 parallelly-1.50.0/parallelly/man/zzz-parallelly.options.Rd | 15 parallelly-1.50.0/parallelly/src/calc-serialized-size.c | 10 parallelly-1.50.0/parallelly/tests/test-workRPSOCK.R |only parallelly-1.50.0/parallelly/vignettes/parallelly-01-intro.md | 2 parallelly-1.50.0/parallelly/vignettes/parallelly-10-local-workers.md | 8 parallelly-1.50.0/parallelly/vignettes/parallelly-12-remote-workers.md | 36 parallelly-1.50.0/parallelly/vignettes/parallelly-17-hpc-workers.md | 273 ++++++ parallelly-1.50.0/parallelly/vignettes/parallelly-21-container-workers.md | 30 parallelly-1.50.0/parallelly/vignettes/parallelly-22-wine-workers.md | 16 parallelly-1.50.0/parallelly/vignettes/parallelly-25-sandbox-workers.md | 4 80 files changed, 3546 insertions(+), 636 deletions(-)
Title: A Tidyverse-Native Client for the 'BrAPI' v2 (Breeding API)
Specification
Description: Provides pipe-friendly, stateless read access to the Breeding
API ('BrAPI') v2.1 specification, an open community standard for plant
breeding data interchange maintained by the BrAPI project
<https://brapi.org>. Wraps 32 of the 37 'BrAPI' v2.1 entities across all
four modules, Core, Germplasm, Phenotyping, and Genotyping, covering 49
of the specification's 138 retrieval ('GET' and search) endpoints and
returning tidy tibbles ready for analysis. Write and update endpoints
are out of scope by design. Features include automatic pagination, async
search handling, response caching, parallel batch fetching, and
convenience functions for genomic selection workflows (e.g. dosage
matrix extraction). Designed for plant breeders and bioinformaticians
who need programmatic access to plant breeding databases that
implement the 'BrAPI' v2 specification.
Author: Joash Joshua Ayo [aut, cre, cph] ,
David Waring [rev] for rOpenSci,
see <https://github.com/ropensci/software-review/issues/792>),
Jenna Hershberger [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/792>)
Maintainer: Joash Joshua Ayo <joashjoshua789@gmail.com>
Diff between brapiR2 versions 0.2.0 dated 2026-10-05 and 0.2.1 dated 2026-10-31
DESCRIPTION | 10 MD5 | 101 +- NAMESPACE | 23 NEWS.md | 753 +++++++++----- R/auth.R | 326 +++--- R/brapiR2-package.R | 190 +-- R/cache.R | 332 +++--- R/connection.R | 362 +++---- R/core.R | 845 ++++++++-------- R/coverage.R | 176 +-- R/genome_maps.R | 397 ++++--- R/genotyping.R | 1357 ++++++++++++++------------- R/germplasm.R | 1007 ++++++++++---------- R/phenotyping.R | 1051 ++++++++++---------- R/request.R | 1082 ++++++++++++--------- R/utils.R | 459 +++++---- README.md | 473 ++++----- inst/WORDLIST | 9 inst/doc/brapiR2.R | 14 inst/doc/brapiR2.Rmd | 924 +++++++++--------- inst/doc/brapiR2.html | 93 - man/brapi_allele_matrix.Rd | 5 man/brapi_cache_clear.Rd | 6 man/brapi_cache_enable.Rd | 10 man/brapi_coverage.Rd | 6 man/brapi_endpoints.Rd | 4 man/brapi_fetch_parallel.Rd | 6 man/brapi_germplasm_pedigree.Rd | 4 man/brapi_germplasm_progeny.Rd | 4 man/brapi_get.Rd | 2 man/brapi_get_dosage_matrix.Rd | 26 man/brapi_get_marker_map.Rd | 11 man/brapi_login.Rd | 8 man/brapi_login_oauth2.Rd | 46 man/brapi_pedigree.Rd | 9 man/brapi_ping.Rd | 13 man/brapi_post_search.Rd | 3 man/brapi_search_marker_positions.Rd | 5 man/brapi_server_info.Rd | 4 man/brapi_study_data.Rd | 35 tests/testthat/helper-live-server.R |only tests/testthat/test-auth-mocked.R | 128 ++ tests/testthat/test-cache-integration.R | 17 tests/testthat/test-cache-mocked.R | 212 +++- tests/testthat/test-genotyping-mocked.R | 339 ++++++ tests/testthat/test-germplasm-mocked.R | 67 + tests/testthat/test-integration.R | 72 - tests/testthat/test-live-server-guard.R |only tests/testthat/test-phenotyping-mocked.R | 471 +++++---- tests/testthat/test-request-mocked.R | 1457 +++++++++++++++++++---------- tests/testthat/test-thin-wrappers-mocked.R | 1089 ++++++++++++--------- tests/testthat/test-validation-mocked.R |only vignettes/brapiR2.Rmd | 924 +++++++++--------- 53 files changed, 8571 insertions(+), 6396 deletions(-)
Title: Bivariate Within- and Between-Cluster Correlations
Description: Separates supplied variables into within- and
between-cluster components and calculates bivariate correlations for
each level separately. For Pearson correlations, the centered-score
decomposition corresponds to commonly used between- and within-cluster
correlations reviewed by Tu et al. (2025) <doi:10.1002/sim.10326>.
The package's descriptive Spearman option is distinct from the clustered
rank parameters introduced in that paper. The package is also
motivated by the distinction between within- and between-person
variation described by Curran and Bauer (2011)
<doi:10.1146/annurev.psych.093008.100356> and by Hamaker (2024)
<doi:10.1080/00273171.2022.2155930>.
The package is intended for longitudinal or otherwise clustered data
where researchers need transparent correlation matrices before fitting
more complex multilevel models.
Author: Pascal Kueng [aut, cre, cph]
Maintainer: Pascal Kueng <pascal.kueng@psychologie.uzh.ch>
Diff between wbCorr versions 0.3.2 dated 2026-07-23 and 0.4.0 dated 2026-10-31
wbCorr-0.3.2/wbCorr/R/02_cor_04_method_03_jackknife.R |only wbCorr-0.3.2/wbCorr/R/04_post_00_matrix_diagnostics.R |only wbCorr-0.3.2/wbCorr/build |only wbCorr-0.3.2/wbCorr/inst/doc |only wbCorr-0.3.2/wbCorr/man/get_matrix_diagnostics.Rd |only wbCorr-0.3.2/wbCorr/tests/testthat/test-excel-export.R |only wbCorr-0.3.2/wbCorr/tests/testthat/test-input-validation.R |only wbCorr-0.3.2/wbCorr/tests/testthat/test-matrix-diagnostics.R |only wbCorr-0.3.2/wbCorr/tests/testthat/test-numeric-accessors.R |only wbCorr-0.3.2/wbCorr/tests/testthat/test-pair-diagnostics.R |only wbCorr-0.3.2/wbCorr/tests/testthat/test-plot-parity.R |only wbCorr-0.3.2/wbCorr/tests/testthat/test-print.R |only wbCorr-0.3.2/wbCorr/tests/testthat/test-spearman.R |only wbCorr-0.3.2/wbCorr/vignettes |only wbCorr-0.4.0/wbCorr/DESCRIPTION | 9 wbCorr-0.4.0/wbCorr/MD5 | 93 - wbCorr-0.4.0/wbCorr/NAMESPACE | 6 wbCorr-0.4.0/wbCorr/NEWS.md | 40 wbCorr-0.4.0/wbCorr/R/01_pre_00_input_validation_and_prep.R | 189 --- wbCorr-0.4.0/wbCorr/R/01_pre_01_centering_wb.R | 7 wbCorr-0.4.0/wbCorr/R/01_pre_02_assumption_checks.R | 55 wbCorr-0.4.0/wbCorr/R/02_cor_01_main_base.R | 684 +---------- wbCorr-0.4.0/wbCorr/R/02_cor_02_initializing.R | 17 wbCorr-0.4.0/wbCorr/R/02_cor_03_calculating_statistics.R | 69 - wbCorr-0.4.0/wbCorr/R/02_cor_04_method_01_pearson.R | 90 - wbCorr-0.4.0/wbCorr/R/02_cor_04_method_02_spearman.R | 44 wbCorr-0.4.0/wbCorr/R/02_cor_05_bootstrap.R | 33 wbCorr-0.4.0/wbCorr/R/03_ICC_compute_ICC1.R | 79 - wbCorr-0.4.0/wbCorr/R/04_post_01_formatting_results_table.R | 45 wbCorr-0.4.0/wbCorr/R/04_post_01_formatting_summarizing.R | 3 wbCorr-0.4.0/wbCorr/R/04_post_02_accessor_functions.R | 142 -- wbCorr-0.4.0/wbCorr/R/05_viz_00_apply_types.R | 59 wbCorr-0.4.0/wbCorr/R/05_viz_01_plot_lower_panel.R | 59 wbCorr-0.4.0/wbCorr/R/05_viz_01_plot_upper_panel.R | 35 wbCorr-0.4.0/wbCorr/R/05_viz_02_plot_all.R | 396 +----- wbCorr-0.4.0/wbCorr/R/06_export_to_excel.R | 92 - wbCorr-0.4.0/wbCorr/R/wbCorr.R | 524 +------- wbCorr-0.4.0/wbCorr/README.md | 298 ++-- wbCorr-0.4.0/wbCorr/inst/CITATION | 6 wbCorr-0.4.0/wbCorr/inst/WORDLIST | 25 wbCorr-0.4.0/wbCorr/man/figures |only wbCorr-0.4.0/wbCorr/man/get_ICC.Rd | 28 wbCorr-0.4.0/wbCorr/man/get_matrix.Rd | 42 wbCorr-0.4.0/wbCorr/man/get_table.Rd | 5 wbCorr-0.4.0/wbCorr/man/plot-wbCorr-method.Rd | 29 wbCorr-0.4.0/wbCorr/man/print.wbCorr.Rd | 3 wbCorr-0.4.0/wbCorr/man/show.wbCorr.Rd | 2 wbCorr-0.4.0/wbCorr/man/to_excel.Rd | 25 wbCorr-0.4.0/wbCorr/man/wbCorr.Rd | 278 ---- wbCorr-0.4.0/wbCorr/tests/testthat/test-estimands.R | 133 -- wbCorr-0.4.0/wbCorr/tests/testthat/test-icc-pearson.R | 152 -- wbCorr-0.4.0/wbCorr/tests/testthat/test-statsby.R | 33 wbCorr-0.4.0/wbCorr/tests/testthat/test-wbCorr.R | 245 +-- 53 files changed, 1061 insertions(+), 3013 deletions(-)
Title: Results Tables to Bridge the Rift Between Epidemiologists and
Their Data
Description: Presentation-ready results tables for epidemiologists in an
automated, reproducible fashion. The user provides the final analytical
dataset and specifies the design of the table, with rows and/or columns
defined by exposure(s), effect modifier(s), and estimands as desired,
allowing to show descriptors and inferential estimates in one table --
bridging the rift between epidemiologists and their data, one table at a
time. See Rothman (2017) <doi:10.1007/s10654-017-0314-3>.
Author: Konrad H. Stopsack [aut, cre, cph]
Maintainer: Konrad H. Stopsack <stopsack@post.harvard.edu>
Diff between rifttable versions 0.7.2 dated 2026-01-18 and 0.7.3 dated 2026-10-31
rifttable-0.7.2/rifttable/R/input_checks.R |only rifttable-0.7.2/rifttable/R/utils_trim.R |only rifttable-0.7.3/rifttable/DESCRIPTION | 8 rifttable-0.7.3/rifttable/MD5 | 75 ++-- rifttable-0.7.3/rifttable/NAMESPACE | 6 rifttable-0.7.3/rifttable/NEWS.md | 25 + rifttable-0.7.3/rifttable/R/check_event_time.R |only rifttable-0.7.3/rifttable/R/check_outcome.R |only rifttable-0.7.3/rifttable/R/estimate_event_time.R | 26 + rifttable-0.7.3/rifttable/R/estimate_survdiff.R | 24 - rifttable-0.7.3/rifttable/R/fill_cells.R | 9 rifttable-0.7.3/rifttable/R/find_argument.R |only rifttable-0.7.3/rifttable/R/find_rounding_digits.R |only rifttable-0.7.3/rifttable/R/format_round.R |only rifttable-0.7.3/rifttable/R/rifttable.R | 77 +++- rifttable-0.7.3/rifttable/R/survdiff_ci.R | 12 rifttable-0.7.3/rifttable/R/table1_design.R | 17 rifttable-0.7.3/rifttable/README.md | 9 rifttable-0.7.3/rifttable/build/partial.rdb |binary rifttable-0.7.3/rifttable/build/vignette.rds |binary rifttable-0.7.3/rifttable/inst/doc/estimators_continuous.R | 2 rifttable-0.7.3/rifttable/inst/doc/estimators_continuous.Rmd | 2 rifttable-0.7.3/rifttable/inst/doc/estimators_continuous.html | 4 rifttable-0.7.3/rifttable/inst/doc/estimators_survival.R | 4 rifttable-0.7.3/rifttable/inst/doc/estimators_survival.Rmd | 16 rifttable-0.7.3/rifttable/inst/doc/estimators_survival.html | 38 +- rifttable-0.7.3/rifttable/inst/doc/faq.R | 16 rifttable-0.7.3/rifttable/inst/doc/faq.Rmd | 113 +++--- rifttable-0.7.3/rifttable/inst/doc/faq.html | 40 +- rifttable-0.7.3/rifttable/man/rifttable.Rd | 27 + rifttable-0.7.3/rifttable/man/survdiff_ci.Rd | 2 rifttable-0.7.3/rifttable/tests/testthat/test-competing.R | 6 rifttable-0.7.3/rifttable/tests/testthat/test-estimators-survival.R | 179 +++++++++- rifttable-0.7.3/rifttable/tests/testthat/test-input-checks.R | 63 +++ rifttable-0.7.3/rifttable/tests/testthat/test-joint_model.R | 9 rifttable-0.7.3/rifttable/tests/testthat/test-layout-cols.R | 111 ++++++ rifttable-0.7.3/rifttable/tests/testthat/test-rt_gt.R | 9 rifttable-0.7.3/rifttable/tests/testthat/test-table1_design.R | 69 +++ rifttable-0.7.3/rifttable/tests/testthat/test-time2.R | 6 rifttable-0.7.3/rifttable/vignettes/estimators_continuous.Rmd | 2 rifttable-0.7.3/rifttable/vignettes/estimators_survival.Rmd | 16 rifttable-0.7.3/rifttable/vignettes/faq.Rmd | 113 +++--- 42 files changed, 865 insertions(+), 270 deletions(-)
Title: OIDC Authentication and OAuth Authorization for 'shiny'
Applications
Description: Provides a simple, configurable framework for 'OpenID Connect'
(OIDC) authentication and 'OAuth 2.0' authorization in 'shiny' applications
using 'S7' classes. Defines providers, clients, and tokens, as well
as various supporting functions and a 'shiny' module. Features include
cross-site request forgery (CSRF) protection, state encryption,
'Proof Key for Code Exchange' (PKCE) handling, validation of OIDC identity
tokens (nonces, signatures, claims), automatic user info retrieval for OIDC
and supported 'OAuth' providers, asynchronous flows,
and hooks for audit logging.
Author: Luka Koning [aut, cre, cph]
Maintainer: Luka Koning <koningluka@gmail.com>
Diff between shinyOAuth versions 0.6.1 dated 2026-09-18 and 0.7.0 dated 2026-10-31
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Title: Access 'Hugging Face' Models and Datasets
Description: Access models and datasets hosted on the 'Hugging Face' Hub
through its Inference Application Programming Interface (API). Run text
classification, embeddings, chat, translation, image, audio, and other
tasks from tidy 'R' workflows without installing 'Python' by default.
Results are returned as data frames or simple 'R' objects so they can be
composed with 'dplyr', 'tidyr', and related tooling. Helpers also support
Hub search, file download, provider discovery, and guarded uploads for
authenticated workflows. Optional local embeddings and text classification
use 'Python' through 'reticulate'.
Author: Alex Farach [aut, cre, cph],
Sam Terfa [aut, cph],
Jack Penzer [aut, cph]
Maintainer: Alex Farach <alexfarach@gmail.com>
Diff between huggingfaceR versions 2.3.0 dated 2026-09-18 and 2.4.0 dated 2026-10-31
DESCRIPTION | 16 - MD5 | 39 ++- NEWS.md | 51 +++++ R/batch.R | 20 ++ R/classify-batch.R | 326 +++++++++++++++++---------------- R/datasets_api.R | 80 ++++---- R/embeddings-batch.R | 191 +++++++++++-------- R/embeddings.R | 152 +++++++++++---- R/hub.R | 76 +++++-- R/tidymodels.R | 14 - R/tidytext.R | 14 - man/hf_embed_batch.Rd | 7 man/hf_nearest_neighbors.Rd | 3 man/hf_similarity.Rd | 7 tests/testthat/helper.R | 25 ++ tests/testthat/test-classify-batch.R | 71 +++++++ tests/testthat/test-dataset-rows.R | 71 +++++++ tests/testthat/test-embeddings-batch.R | 130 +++++++++++++ tests/testthat/test-embeddings.R | 98 +++++++++ tests/testthat/test-hub.R | 117 +++++++++++ tests/testthat/test-tidymodels.R |only 21 files changed, 1127 insertions(+), 381 deletions(-)
Title: Reproducible Data Capsules with Provenance and Fallback
Description: For analyzing published and unpublished tables, from open-data
portals and statistical agencies to a researcher's own data, so that a
result can be traced to the exact data behind it and checked again
afterwards. A 'capsule' records where each source came from, its Secure
Hash Algorithm 256 ('SHA-256') hash, the schema it should have and an
archived copy in the Internet Archive 'Wayback Machine'
('web.archive.org'); sources are found through the Comprehensive
Knowledge Archive Network ('CKAN', 'ckan.org'). Run again, a capsule
says whether each source still matches and, if it does not, how its
distribution moved (Kolmogorov-Smirnov, chi-square, population stability
index and 'Benford' first-digit screens), and when a source cannot be
reached it runs on schema-driven synthetic data that is marked as such.
Capsules can be signed with keyed hashes ('HMAC-SHA-256', RFC 2104) or
with the post-quantum signature standards 'ML-DSA' (FIPS 204), 'SLH-DSA'
(FIPS 205) and 'XMSS' (RFC 8391), implem [...truncated...]
Author: Vansh Singh Ruhela [aut, cre]
Maintainer: Vansh Singh Ruhela <vsruhela@proton.me>
Diff between rmoriebricklayer versions 1.0.3 dated 2026-10-30 and 1.0.4 dated 2026-10-31
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rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnormlpdf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnormpdf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnscwb.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnsprof.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnsstd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cnttrnd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/co2fp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/co2int.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cohtrnd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/commidx.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/concentration.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/connassoc.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cortbl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsatst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsbndl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpschk.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsdrft.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsfals.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsplant.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpspwr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsrfrsh.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsrpt.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsseal.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpssign.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsspec.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsvrf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cpsxvrf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cramerv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/crank.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/crfpm25.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/crmdens.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/crob.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/csha256.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/csha512.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cspread.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cstat.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ctrm.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cunif.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cwbscr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/cwtd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/deccodes.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/declbld.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dgstobj.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dispmix.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dldata.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dlogin.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dlogout.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dmnf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drbggen.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drbgnew.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drbgrsd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drftapp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drftcal.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drftchisq.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drfthomog.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drfthtml.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drftks.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drftpsi.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/drvkey.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dstfit.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dstn.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dstntst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dtctloc.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/dualcont.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/duprows.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ebrates.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/envdiff.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/evlrr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/evstudy.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/expbands.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/expcnts.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/expconcidx.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/explerr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/exprspplr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/exptrnd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/falsfam.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fdl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fetchvrf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/filedgst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipskey.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipskg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipsmkg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipsmod.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipsmu.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fipssz.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fnllim.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fpeqv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/freqtbl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/frmaud.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fromjs.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/fylbl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/genexpo.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ghann.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/grdbin.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/grdlvls.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/grdrcd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/healchg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hilltlidx.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/holbal.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hotpers.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hqccmpkey.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hqcdecap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hqcencap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hqckg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hqcsz.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/hurwzeta.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/idcrd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/indgap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/indiex.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/indtabs.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/infsch.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/inlhist.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/instcli.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/jsgz.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/jsserdoc.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/justice-data.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/kemdecap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/kemencap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/kemkg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/kemsz.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/keyeddgst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/knoxtst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ldgrread.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/lifetbl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/limfrom.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmask.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmcfg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmchat.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmmdls.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmprvd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmrte.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/llmstat.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/loadprov.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/loounit.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ltrlrng.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mahaoutl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mcartst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mhcont.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/missgrid.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/misspat.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/missruns.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/misssmry.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mkbndl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mkbndlchk.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mkbndlproj.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mkmnf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mkset.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mksyncol.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mksyncsv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mnfcanon.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mnfdiff.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mnfrcmp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mnfrecseed.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/morani.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mortdisp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mrk.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/mtchdid.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/onl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/optsqr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/oqskg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/orchk.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ordcmp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/perdays.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/perminf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/pgsig.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/piperate.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plmfld.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plndid.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plndml.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plnpois.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plnpwr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plot-methods.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plot.rmbl_dstfit.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plotevgrid.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plothwk.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plotlrnz.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plotmore.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plotseries.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/plrcf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/polbrdarea.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/polbrdn.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/polex.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/pqcbknd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/pqckg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/printmeth.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/profcols.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/profshr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/prrgdecl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/prsbands.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/pubbnd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/qltyrcd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ralloc.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rallocvrf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/raplok.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/ratechg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rategap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rcdmnf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/recevid.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/recrd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/relbl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rgncov.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rgnmapalt.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rgnmapcmp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rgnmapintg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rgnmappts.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rlblfrns.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rmbl-aliases.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rmbl-compat.Rd | 278 ------- rmoriebricklayer-1.0.4/rmoriebricklayer/man/rmblapp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rmbldemo.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rndbytes.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rptanl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rptmd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rslvarc.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rslvckan.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rslvckns.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rslvsoc.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rsv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rtcalc.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rul.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rulelib.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/rvkfetch.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/scanadj.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/scests.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/schemapath.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/schval.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/sctidy.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/sevidx.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/sha256file.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/shrs.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/signpubkey.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/siudate.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/siufetch.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/siufprs.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/siuprs.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/siusch.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/siuso.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/siutxt.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/sprd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/srchfig.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/staysmry.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/stdinc.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/stdprev.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/stepchg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/stgatt.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/stkflow.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/stpdnpv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/svcs.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/svycmp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/svydes.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/svyest.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/swtdid.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/synctl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/syndid.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/toascii.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/tojs.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/topcors.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/trccmpl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/trchlthgap.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/trcind.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/trcprog.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/trndtst.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/tse.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/tsstmp.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/tsvrf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/usecpstmpl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/valrules.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/valsch.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/vrfcps.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/vrfmrg.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/vrfpol.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/vrfrcd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/vrfsha256.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/wbrtry.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/wbsave.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/wbsnpnat.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/wbsnpurl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/wcb.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/welprof.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/wrmnfjs.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/wrrcdmnf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/wrsmrytxt.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/wrtxtfb.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/xfrvrf.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/xmssadv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/xmssidxseen.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/yoy.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/yoybnd.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/yoydelim.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/yoylbl.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/yoypals.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/yoypv.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/yoyren.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/yoysmry.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/man/yoywr.Rd |only rmoriebricklayer-1.0.4/rmoriebricklayer/tests/testthat.R | 8 360 files changed, 408 insertions(+), 296 deletions(-)
More information about rmoriebricklayer at CRAN
Permanent link
Title: A Simple Interface for Interacting with 'WebDAV' Servers
Description: An easy-to-use interface for interacting with 'WebDAV' servers,
including 'OwnCloud'. It simplifies the use of 'WebDAV' methods such as COPY, MOVE, DELETE and others.
With built-in authentication and request handling, it allows for easy
management of files and directories over the 'WebDAV' protocol.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Julia Nascimento Barreto [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between webdav versions 0.2.0 dated 2026-04-07 and 0.3.0 dated 2026-10-31
DESCRIPTION | 48 +++-- MD5 | 40 ++-- NAMESPACE | 11 - NEWS.md | 50 +++++ R/utils.R | 4 R/webdav.R | 374 +++++++++++++++++++++++++++++------------ README.md | 59 ++++++ build/vignette.rds |binary inst/doc/env_variables.html | 45 ++-- inst/doc/webdav.Rmd | 65 +++++-- inst/doc/webdav.html | 234 ++++++++++++++----------- man/webdav_copy_file.Rd | 22 ++ man/webdav_create_directory.Rd | 4 man/webdav_create_request.Rd | 2 man/webdav_delete_resource.Rd | 4 man/webdav_download_file.Rd | 4 man/webdav_list_files.Rd | 2 man/webdav_move_file.Rd |only man/webdav_upload_file.Rd | 4 tests |only vignettes/webdav.Rmd | 65 +++++-- 21 files changed, 725 insertions(+), 312 deletions(-)
Title: Statistical Matching Using Latent Class Models
Description: Provides a revised framework for statistical matching of categorical data based on latent class models, including multiple imputation, predictive modeling, nearest-neighbour hot-deck matching, and probabilistic assignment of categorical target variables. It allows researchers to perform data integration when no unique identifiers are available by modeling the joint distribution of variables through latent categorical structures. The package supports estimation of latent class models, probabilistic matching between donor and recipient data sets, and generation of synthetic linked data under uncertainty. It is particularly useful in survey research and data fusion applications where combining information from multiple sources is required while preserving statistical properties and accounting for measurement error and missing data mechanisms.
The latent class matching methods are described by Lewaa, Hafez and Ismail (2023) <doi:10.18576/jsap/120123>.
(2.0->2.1): in smc2_step2() G [...truncated...]
Author: Alicja Wolny-Dominiak [aut, cre],
Israa Lewaaelhamd [aut],
Mohammed Ali Ismail [aut]
Maintainer: Alicja Wolny-Dominiak <woali@ue.katowice.pl>
Diff between statMatchLCM versions 2.0 dated 2026-10-13 and 2.1 dated 2026-10-31
DESCRIPTION | 10 ++++++---- MD5 | 4 ++-- R/statMatchLCM.R | 4 ++-- 3 files changed, 10 insertions(+), 8 deletions(-)
Title: Geocode with the OpenCage API
Description: Geocode with the OpenCage API, either from place name to
longitude and latitude (forward geocoding) or from longitude and
latitude to the name and address of a location (reverse geocoding),
see <https://opencagedata.com>.
Author: Daniel Possenriede [aut, cre] ,
Jesse Sadler [aut] ,
Maelle Salmon [aut] ,
Noam Ross [ctb],
Jake Russ [ctb],
Julia Silge [rev] for
rOpenSci, see <https://github.com/ropensci/onboarding/issues/36>.)
Maintainer: Daniel Possenriede <possenriede+r@gmail.com>
Diff between opencage versions 0.2.2 dated 2021-02-19 and 0.3.0 dated 2026-10-31
opencage-0.2.2/opencage/R/data_doc.R |only opencage-0.2.2/opencage/R/utils.R |only opencage-0.2.2/opencage/data/countrycodes.RData |only opencage-0.2.2/opencage/inst/extdata |only opencage-0.2.2/opencage/man/opencage.Rd |only opencage-0.3.0/opencage/DESCRIPTION | 56 opencage-0.3.0/opencage/MD5 | 101 opencage-0.3.0/opencage/NEWS.md | 139 opencage-0.3.0/opencage/R/countrycodes.R |only opencage-0.3.0/opencage/R/deprecated.R | 101 opencage-0.3.0/opencage/R/oc_bbox.R | 59 opencage-0.3.0/opencage/R/oc_check_query.R | 127 opencage-0.3.0/opencage/R/oc_config.R | 8 opencage-0.3.0/opencage/R/oc_forward.R | 330 +- opencage-0.3.0/opencage/R/oc_key.R | 7 opencage-0.3.0/opencage/R/oc_points.R | 27 opencage-0.3.0/opencage/R/oc_process.R | 262 + opencage-0.3.0/opencage/R/oc_progress.R |only opencage-0.3.0/opencage/R/oc_reverse.R | 224 - opencage-0.3.0/opencage/R/opencage-package.R | 11 opencage-0.3.0/opencage/R/zzz.R | 20 opencage-0.3.0/opencage/build/vignette.rds |binary opencage-0.3.0/opencage/data/countrycodes.rda |only opencage-0.3.0/opencage/inst/doc/customise_query.Rmd | 375 +- opencage-0.3.0/opencage/inst/doc/customise_query.html | 1423 ++++++++-- opencage-0.3.0/opencage/inst/doc/opencage.Rmd | 104 opencage-0.3.0/opencage/inst/doc/opencage.html | 960 +++++- opencage-0.3.0/opencage/inst/doc/output_options.Rmd | 249 - opencage-0.3.0/opencage/inst/doc/output_options.html | 1026 ++++--- opencage-0.3.0/opencage/man/countrycodes.Rd | 2 opencage-0.3.0/opencage/man/oc_clear_cache.Rd | 2 opencage-0.3.0/opencage/man/oc_forward.Rd | 54 opencage-0.3.0/opencage/man/oc_forward_df.Rd | 63 opencage-0.3.0/opencage/man/oc_reverse.Rd | 27 opencage-0.3.0/opencage/man/oc_reverse_df.Rd | 51 opencage-0.3.0/opencage/man/opencage-package.Rd |only opencage-0.3.0/opencage/man/opencage_forward.Rd | 14 opencage-0.3.0/opencage/man/opencage_key.Rd | 4 opencage-0.3.0/opencage/man/opencage_reverse.Rd | 18 opencage-0.3.0/opencage/tests/testthat/_snaps |only opencage-0.3.0/opencage/tests/testthat/helper-opencage.R | 74 opencage-0.3.0/opencage/tests/testthat/test-deprecated.R | 183 - opencage-0.3.0/opencage/tests/testthat/test-oc_bbox.R | 10 opencage-0.3.0/opencage/tests/testthat/test-oc_build_url.R | 2 opencage-0.3.0/opencage/tests/testthat/test-oc_check_query.R | 87 opencage-0.3.0/opencage/tests/testthat/test-oc_check_status.R | 7 opencage-0.3.0/opencage/tests/testthat/test-oc_config.R | 34 opencage-0.3.0/opencage/tests/testthat/test-oc_forward.R | 284 + opencage-0.3.0/opencage/tests/testthat/test-oc_get.R | 2 opencage-0.3.0/opencage/tests/testthat/test-oc_key.R | 4 opencage-0.3.0/opencage/tests/testthat/test-oc_points.R | 18 opencage-0.3.0/opencage/tests/testthat/test-oc_process.R | 56 opencage-0.3.0/opencage/tests/testthat/test-oc_reverse.R | 295 +- opencage-0.3.0/opencage/vignettes/customise_query.Rmd | 375 +- opencage-0.3.0/opencage/vignettes/opencage.Rmd | 104 opencage-0.3.0/opencage/vignettes/output_options.Rmd | 249 - 56 files changed, 4899 insertions(+), 2729 deletions(-)
Title: Distributions Compatible with Automatic Differentiation by
'RTMB'
Description: Extends the functionality of the 'RTMB' <https://kaskr.r-universe.dev/RTMB> package by providing a collection of non-standard probability distributions compatible with automatic differentiation (AD). While 'RTMB' enables flexible and efficient modelling, including random effects, its built-in support is limited to standard distributions. The package adds additional AD-compatible distributions, broadening the range of models that can be implemented and estimated using 'RTMB'. Automatic differentiation and Laplace approximation are described in Kristensen et al. (2016) <doi:10.18637/jss.v070.i05>.
Author: Jan-Ole Fischer [aut, cre]
Maintainer: Jan-Ole Fischer <jan-ole.fischer@mailbox.org>
Diff between RTMBdist versions 1.1.0 dated 2026-09-06 and 1.2.0 dated 2026-10-31
DESCRIPTION | 12 MD5 | 302 ++++++++----- NAMESPACE | 114 ++++- NEWS.md | 56 ++ R/aaa_utils.R | 81 +++ R/ad-dispatch.R |only R/atomic.R |only R/bccg.R | 2 R/bcpe.R | 5 R/beta2.R | 4 R/betabinom.R | 31 + R/betaprime.R | 4 R/bisa.R |only R/bnbinom.R |only R/bnbinom2.R |only R/card.R |only R/circcopulas.R |only R/combinom.R | 12 R/copulas.R | 27 - R/discrete_cdf.R |only R/exgauss.R | 2 R/foldnorm.R | 13 R/frechet.R |only R/gamma2.R | 2 R/gb2.R |only R/genpois.R | 29 - R/geom-ad.R |only R/gev.R |only R/gpd.R |only R/gumbel.R | 2 R/halfcauchy.R |only R/halft.R |only R/hbetabinom.R |only R/hbinom.R |only R/hgeom.R |only R/hnbinom.R |only R/hnbinom2.R |only R/hpois.R |only R/invgamma.R | 18 R/nbinom2.R | 2 R/numerical_cdf.R |only R/oibeta.R | 4 R/pareto.R | 2 R/pbeta-workaround.R |only R/pig.R |only R/powerexp.R | 57 ++ R/sichel.R |only R/skellam.R | 85 +++ R/skewnorm.R | 47 +- R/skewnorm2.R | 1 R/skewt.R | 69 ++- R/skewt2.R | 6 R/t2.R | 42 + R/truncnorm.R | 16 R/trunct.R | 10 R/trunct2.R | 16 R/vm.R | 57 ++ R/waring.R |only R/wrpcauchy.R | 158 ++++++- R/wrpnorm.R |only R/yules.R |only R/zibeta.R | 10 R/zibeta2.R | 6 R/zibetabinom.R |only R/zibinom.R | 5 R/zigamma.R | 10 R/zigamma2.R | 6 R/zigeom.R |only R/ziinvgauss.R | 8 R/zilnorm.R | 17 R/zinbinom.R | 4 R/zipois.R | 4 R/ziweibull.R | 8 R/zoibeta.R | 4 R/ztbetabinom.R |only R/ztbinom.R | 8 R/ztgeom.R |only R/ztnbinom.R | 12 inst/doc/Examples.R | 262 +++++++++++ inst/doc/Examples.Rmd | 357 +++++++++++++++- inst/doc/Examples.html | 544 ++++++++++++++++++++---- inst/doc/adding-a-distribution.Rmd | 512 +++++++++++++---------- inst/doc/adding-a-distribution.html | 732 ++++++++++++++++++++------------- inst/doc/distlist.Rmd | 65 ++ inst/doc/distlist.html | 111 ++++- inst/extdata |only man/betabinom.Rd | 20 man/bisa.Rd |only man/bnbinom.Rd |only man/bnbinom2.Rd |only man/card.Rd |only man/cfold.Rd |only man/cfrank.Rd | 2 man/cgumbel.Rd | 6 man/cjw.Rd |only man/dcopula.Rd | 7 man/foldnorm.Rd | 6 man/frechet.Rd |only man/gb2.Rd |only man/geom.ad.Rd |only man/gev.Rd |only man/gpd.Rd |only man/gumbel.Rd | 3 man/halfcauchy.Rd |only man/halft.Rd |only man/hbetabinom.Rd |only man/hbinom.Rd |only man/hgeom.Rd |only man/hnbinom.Rd |only man/hnbinom2.Rd |only man/hpois.Rd |only man/invgamma.Rd | 2 man/pareto.Rd | 2 man/pig.Rd |only man/sichel.Rd |only man/skellam.Rd | 26 + man/skewnorm.Rd | 1 man/skewnorm2.Rd | 1 man/skewt.Rd | 4 man/skewt2.Rd | 6 man/t2.Rd | 8 man/vm.Rd | 33 + man/waring.Rd |only man/wrpcauchy.Rd | 77 +++ man/wrpnorm.Rd |only man/yules.Rd |only man/zibeta.Rd | 6 man/zibeta2.Rd | 6 man/zibetabinom.Rd |only man/zigamma.Rd | 6 man/zigamma2.Rd | 6 man/zigeom.Rd |only man/ziinvgauss.Rd | 6 man/zilnorm.Rd | 14 man/ziweibull.Rd | 6 man/ztbetabinom.Rd |only man/ztgeom.Rd |only tests/testthat/helper-distcheck.R | 171 +++++++ tests/testthat/test-atomic.R |only tests/testthat/test-bcpe.R | 30 + tests/testthat/test-betabinom-zero.R |only tests/testthat/test-betabinom.R | 35 + tests/testthat/test-bisa.R |only tests/testthat/test-bnbinom.R |only tests/testthat/test-bnbinom2.R |only tests/testthat/test-card.R |only tests/testthat/test-circcopulas.R |only tests/testthat/test-combinom.R | 8 tests/testthat/test-copulas.R |only tests/testthat/test-exgauss.R | 18 tests/testthat/test-foldnorm.R | 6 tests/testthat/test-frechet.R |only tests/testthat/test-gamma2.R | 8 tests/testthat/test-gb2.R |only tests/testthat/test-gengamma.R | 7 tests/testthat/test-genpois.R | 15 tests/testthat/test-geom-zero.R |only tests/testthat/test-gev.R |only tests/testthat/test-gpd.R |only tests/testthat/test-halfcauchy.R |only tests/testthat/test-halft.R |only tests/testthat/test-hbinom.R |only tests/testthat/test-hnbinom.R |only tests/testthat/test-hnbinom2.R |only tests/testthat/test-hpois.R |only tests/testthat/test-invchisq.R | 7 tests/testthat/test-invgamma.R | 35 + tests/testthat/test-pbeta-workaround.R |only tests/testthat/test-pig.R |only tests/testthat/test-powerexp.R | 29 + tests/testthat/test-recycling.R | 22 tests/testthat/test-sichel.R |only tests/testthat/test-skellam.R | 121 +++++ tests/testthat/test-skewnorm.R | 111 +++++ tests/testthat/test-skewnorm2.R | 9 tests/testthat/test-skewt.R | 78 +++ tests/testthat/test-skewt2.R | 9 tests/testthat/test-t2.R | 23 + tests/testthat/test-truncnorm.R | 21 tests/testthat/test-trunct.R | 16 tests/testthat/test-trunct2.R | 25 + tests/testthat/test-vm.R | 56 ++ tests/testthat/test-waring.R |only tests/testthat/test-wrpcauchy.R | 198 ++++++++ tests/testthat/test-wrpnorm.R |only tests/testthat/test-yules.R |only tests/testthat/test-zibinom.R | 8 tests/testthat/test-zigamma.R | 16 tests/testthat/test-zigamma2.R | 7 tests/testthat/test-ztbinom.R | 14 tests/testthat/test-ztnbinom.R | 13 tests/testthat/test-ztnbinom2.R | 13 vignettes/Examples.Rmd | 357 +++++++++++++++- vignettes/adding-a-distribution.Rmd | 512 +++++++++++++---------- vignettes/distlist.Rmd | 65 ++ 195 files changed, 5118 insertions(+), 1172 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: Jose Pinheiro [aut] ,
Douglas Bates [aut] ,
Saikat DebRoy [ctb] ,
Deepayan Sarkar [ctb] ,
EISPACK authors [ctb] ,
Siem Heisterkamp [ctb] ,
Bert Van Willigen [ctb] ,
Johannes Ranke [ctb] ),
R Core Team [aut, cre]
Maintainer: R Core Team <R-core@R-project.org>
Diff between nlme versions 3.1-171 dated 2026-09-01 and 3.1-172 dated 2026-10-31
ChangeLog | 8 +++++++- DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- tests/deparse.R | 6 +++++- tests/nlme.R | 6 ++++-- tests/predict.lme.R | 6 +++--- 6 files changed, 28 insertions(+), 16 deletions(-)
Title: Connecting Stream Mining Components Using Sockets and Web
Services
Description: Adds functionality to connect stream mining components from the stream package using sockets and Web services. The package can be used to create distributed workflows and plumber-based Web services that can be deployed on most common cloud services.
Author: Michael Hahsler [aut, cre, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between streamConnect versions 0.1.1 dated 2026-10-29 and 0.1.2 dated 2026-10-31
streamConnect-0.1.1/streamConnect/R/has_localhost_server.R |only streamConnect-0.1.1/streamConnect/man/has_localhost_server.Rd |only streamConnect-0.1.2/streamConnect/DESCRIPTION | 8 streamConnect-0.1.2/streamConnect/MD5 | 53 +-- streamConnect-0.1.2/streamConnect/NAMESPACE | 1 streamConnect-0.1.2/streamConnect/NEWS.md | 14 streamConnect-0.1.2/streamConnect/R/DSC_WebService.R | 15 streamConnect-0.1.2/streamConnect/R/DSD_ReadSocket.R | 16 streamConnect-0.1.2/streamConnect/R/DSD_ReadWebService.R | 15 streamConnect-0.1.2/streamConnect/R/plumber.R | 2 streamConnect-0.1.2/streamConnect/R/publish_DSC_via_WebService.R | 17 streamConnect-0.1.2/streamConnect/R/publish_DSD_via_Socket.R | 13 streamConnect-0.1.2/streamConnect/R/publish_DSD_via_WebService.R | 23 - streamConnect-0.1.2/streamConnect/R/retry.R | 1 streamConnect-0.1.2/streamConnect/inst/doc/streamConnect.R | 46 +- streamConnect-0.1.2/streamConnect/inst/doc/streamConnect.Rmd | 51 +- streamConnect-0.1.2/streamConnect/inst/doc/streamConnect.html | 176 +++++----- streamConnect-0.1.2/streamConnect/man/DSC_WebService.Rd | 16 streamConnect-0.1.2/streamConnect/man/DSD_ReadSocket.Rd | 16 streamConnect-0.1.2/streamConnect/man/DSD_ReadWebService.Rd | 16 streamConnect-0.1.2/streamConnect/man/publish_DSC_via_WebService.Rd | 17 streamConnect-0.1.2/streamConnect/man/publish_DSD_via_Socket.Rd | 13 streamConnect-0.1.2/streamConnect/man/publish_DSD_via_WebService.Rd | 23 - streamConnect-0.1.2/streamConnect/tests/testthat.R | 2 streamConnect-0.1.2/streamConnect/tests/testthat/test-port-examples.R |only streamConnect-0.1.2/streamConnect/tests/testthat/test-retry.R | 30 + streamConnect-0.1.2/streamConnect/tests/testthat/test-socket-localhost.R |only streamConnect-0.1.2/streamConnect/tests/testthat/test-webservice-helpers.R | 98 +++++ streamConnect-0.1.2/streamConnect/tests/testthat/test-webservice-localhost.R |only streamConnect-0.1.2/streamConnect/vignettes/streamConnect.Rmd | 51 +- 30 files changed, 462 insertions(+), 271 deletions(-)
Title: Statistical Tools Designed for End Users
Description: The statistical tools in this package do one of four things:
1) Enhance basic statistical functions with more
flexible inputs, smarter defaults, and richer, clearer, and ready-to-use
output (e.g., t.test2())
2) Produce publication-ready commonly needed figures with one line of code (e.g., plot_cdf())
3) Implement novel analytical tools developed by the authors (e.g., twolines())
4) Deliver niche functions of high value to the authors that are not easily
available elsewhere (e.g., clear(), convert_to_sql(), resize_images()).
Author: Uri Simonsohn [aut, cre]
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between statuser versions 0.4.0 dated 2026-10-09 and 0.4.1 dated 2026-10-31
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Title: Publication-Ready Tables for Descriptive Statistics and
Regression Models
Description: Provides publication-ready tables for descriptive statistics
and regression models: frequency tables and cross-tabulations with
association measures (Cramér's V, Kendall's Tau-b, and others),
categorical and continuous summary tables, by group or from a complex
survey design, and regression tables for one or more models side by
side, across more than thirty model classes from mixed-effects to
survival and Bayesian, with robust standard errors, average marginal
effects, and univariable screening. Tables follow APA conventions by
default, can switch to named journal styles such as JAMA, NEJM, or
The Lancet, and render identically in the console and in 'gt',
'tinytable', 'flextable', 'Word', 'Excel', or the clipboard. Declared
missing values in labelled data are honored and disclosed throughout
the descriptive tables. Helpers cover codebooks, variable inspection,
and row-wise summaries.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.13.0 dated 2026-10-01 and 0.14.0 dated 2026-10-31
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Title: Splitting Conic Solver
Description: Solves convex cone programs via operator splitting. Can solve:
linear programs ('LPs'), second-order cone programs ('SOCPs'), semidefinite programs
('SDPs'), exponential cone programs ('ECPs'), and power cone programs ('PCPs'), or
problems with any combination of those cones. 'SCS' uses 'AMD' (a set of routines for permuting sparse matrices prior to factorization) and 'LDL' (a sparse 'LDL' factorization and solve package) from 'SuiteSparse' (<https://people.engr.tamu.edu/davis/suitesparse.html>).
Author: Florian Schwendinger [aut, cre],
Brendan O'Donoghue [aut, cph],
Balasubramanian Narasimhan [aut],
Timothy A. Davis [cph],
Patrick R. Amestoy [cph],
Iain S. Duff [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between scs versions 3.2.7 dated 2025-04-14 and 3.3.1 dated 2026-10-31
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scs-3.3.1/scs/inst/tinytest/problem_results/test_aa_regularization_sweep2.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_aa_regularization_sweep3.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_aa_relaxation_sweep1.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_aa_relaxation_sweep2.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_aa_relaxation_sweep3.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_adaptive_scale.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_box_cone_lp.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_dual_exp_cone.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_dual_power_cone.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_infeasible_inaccurate.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_invalid_aa_regularization_rejected1.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_invalid_aa_regularization_rejected2.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_invalid_aa_regularization_rejected3.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_invalid_aa_relaxation_rejected.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_max_iters_1.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_mixed_cones.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_multi_power.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_multi_soc.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_negative_lookback_rejected.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_no_acceleration.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_normalize_off1.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_normalize_off2.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_pinned_negative_regularization_solves.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_power_cone1.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_power_cone2.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_power_cone_infeasible.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_power_cone_p09.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_psd_n1.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_soc_size1.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_soc_size2.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_soc_size3.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_soc_size5.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_solved_inaccurate.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_type2_acceleration.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_unbounded_inaccurate.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation1.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation10.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation11.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation12.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation15.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation2.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation22.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation3.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation4.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation5.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation6.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation7.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation8.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_validation9.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_warm_start1.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/test_zero_cone.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/unbounded_lp.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/unbounded_socp.RDS |only scs-3.3.1/scs/inst/tinytest/problem_results/unbounded_tiny_qp.RDS |binary scs-3.3.1/scs/inst/tinytest/test_cone_fields.R |only scs-3.3.1/scs/inst/tinytest/test_empty_matrix.R |only scs-3.3.1/scs/inst/tinytest/test_problems.R | 351 +- scs-3.3.1/scs/inst/tinytest/test_socp.R | 2 scs-3.3.1/scs/inst/tinytest/test_sparse_utils.R | 26 scs-3.3.1/scs/man/scs.Rd | 63 scs-3.3.1/scs/man/scs_control.Rd | 34 scs-3.3.1/scs/man/scs_version.Rd |only scs-3.3.1/scs/src/Makevars | 30 scs-3.3.1/scs/src/Makevars.win | 17 scs-3.3.1/scs/src/init.c | 9 scs-3.3.1/scs/src/scs/Makefile | 181 - scs-3.3.1/scs/src/scs/include/aa.h | 70 scs-3.3.1/scs/src/scs/include/aa_stats.h |only scs-3.3.1/scs/src/scs/include/cones.h | 70 scs-3.3.1/scs/src/scs/include/glbopts.h | 161 scs-3.3.1/scs/src/scs/include/linalg.h | 6 scs-3.3.1/scs/src/scs/include/linsys.h | 3 scs-3.3.1/scs/src/scs/include/normalize.h | 8 scs-3.3.1/scs/src/scs/include/rw.h | 12 scs-3.3.1/scs/src/scs/include/scs.h | 47 scs-3.3.1/scs/src/scs/include/scs_blas.h | 12 scs-3.3.1/scs/src/scs/include/scs_types.h | 4 scs-3.3.1/scs/src/scs/include/scs_work.h | 23 scs-3.3.1/scs/src/scs/include/util.h | 8 scs-3.3.1/scs/src/scs/include/util_spectral_cones.h |only scs-3.3.1/scs/src/scs/linsys/cpu/direct/private.c | 136 scs-3.3.1/scs/src/scs/linsys/cpu/direct/private.h | 3 scs-3.3.1/scs/src/scs/linsys/csparse.c | 14 scs-3.3.1/scs/src/scs/linsys/csparse.h | 6 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_1.c | 2 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_2.c | 88 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_aat.c | 10 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_dump.c | 24 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_post_tree.c | 6 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_postorder.c | 16 scs-3.3.1/scs/src/scs/linsys/external/amd/amd_valid.c | 10 scs-3.3.1/scs/src/scs/linsys/external/qdldl/qdldl_types.h | 2 scs-3.3.1/scs/src/scs/linsys/scs_matrix.c | 456 +- scs-3.3.1/scs/src/scs/linsys/scs_matrix.h | 16 scs-3.3.1/scs/src/scs/scs.mk | 67 scs-3.3.1/scs/src/scs/src/aa.c | 839 +++- scs-3.3.1/scs/src/scs/src/cones.c | 1688 +++++++--- scs-3.3.1/scs/src/scs/src/ctrlc.c | 75 scs-3.3.1/scs/src/scs/src/exp_cone.c | 296 + scs-3.3.1/scs/src/scs/src/linalg.c | 29 scs-3.3.1/scs/src/scs/src/normalize.c | 50 scs-3.3.1/scs/src/scs/src/rw.c | 736 +++- scs-3.3.1/scs/src/scs/src/scs.c | 1375 +++++--- scs-3.3.1/scs/src/scs/src/util.c | 44 scs-3.3.1/scs/src/scs_mods/README.md | 33 scs-3.3.1/scs/src/scs_mods/cones.c |only scs-3.3.1/scs/src/scs_mods/scs.mk | 69 scs-3.3.1/scs/src/scsr.c | 616 +-- 158 files changed, 6140 insertions(+), 2391 deletions(-)
Title: 'SCS' Plug-in for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the 'SCS' solver for solving convex cone problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.scs versions 1.1-2 dated 2023-07-07 and 1.1-4 dated 2026-10-31
ROI.plugin.scs-1.1-2/ROI.plugin.scs/tests/test_scs.R |only ROI.plugin.scs-1.1-4/ROI.plugin.scs/DESCRIPTION | 11 ++++++----- ROI.plugin.scs-1.1-4/ROI.plugin.scs/MD5 | 11 +++++++---- ROI.plugin.scs-1.1-4/ROI.plugin.scs/R/plugin.R | 14 +++++++------- ROI.plugin.scs-1.1-4/ROI.plugin.scs/man/Example_03.Rd | 4 ++-- ROI.plugin.scs-1.1-4/ROI.plugin.scs/tests/tinytest |only ROI.plugin.scs-1.1-4/ROI.plugin.scs/tests/tinytest.R |only 7 files changed, 22 insertions(+), 18 deletions(-)
More information about ROI.plugin.scs at CRAN
Permanent link
Title: Thread-Safe C++ Trust Region Optimizers
Description: Thread-safe C++ trust region optimizers, each exposed
both as an R function and as a C-callable entry point (with function
pointers registered for other packages to call without linking
against this package's shared library) so they can be used from
parallel C++ code such as in 'nlmixr2est'. Includes a port of the
two-derivative trust region algorithm in the 'trust' package by
Charles J. Geyer; a port of the Steihaug truncated conjugate-gradient
trust region method from the 'basin' Rust crate (Steihaug (1983)
<doi:10.1137/0720042>); and ports of M. J. D. Powell's
derivative-free BOBYQA (Powell (2009), Report DAMTP 2009/NA06) and
NEWUOA (Powell (2006) <doi:10.1007/0-387-30065-1_16>) Fortran 77
code <https://github.com/libprima/prima/tree/main/fortran/original>,
as modified and distributed in the 'minqa' package, whose R
interface is reproduced.
Author: Charles J. Geyer [aut, cph] ,
Matthew Fidler [aut, cre] ,
Michael J. D. Powell [aut] ,
Douglas Bates [ctb, cph] ,
Katharine M. Mullen [ctb, cph] ,
John C. Nash [ctb, cph] ,
Ravi Varadhan [ctb, cph] ,
Johan Larsson [ctb, cph]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between RcppTrust versions 0.2.0 dated 2026-10-27 and 0.2.1 dated 2026-10-31
DESCRIPTION | 6 +- MD5 | 23 +++++---- NEWS.md | 21 ++++++++ inst/doc/RcppTrust.R | 66 ++++++++++++++-------------- inst/doc/RcppTrust.html | 29 ++++++++---- src/minqa_r_interface.cpp | 14 ++--- src/r_callback_error.h |only src/solver_test_objfuns.cpp | 3 - src/steihaug_r_interface.cpp | 14 ++--- src/trust_test_objfuns.cpp | 5 +- tests/testthat/test-c-objfun-threadsafety.R | 6 ++ tests/testthat/test-minqa.R | 66 ++++++++++++++++++++-------- tests/testthat/test-steihaug.R | 12 +++++ 13 files changed, 175 insertions(+), 90 deletions(-)
Title: Calculation of Slope-Dependant Accumulated Cost Surface,
Least-Cost Paths, Least-Cost Corridors, Least-Cost Networks
Related to Human Movement Across the Landscape
Description: Provides the facility to calculate non-isotropic accumulated cost surfaces, least-cost paths, least-cost corridors, least-cost networks, ranked alternative paths, cost allocation and cost boundaries, using a number of human-movement-related cost functions that can be selected by the user. The terrain factor can be set as a single value or vary across the landscape via a raster of terrain factors or terrain classes. The package is built around a compute-once design: a single cost surface object is created first and then reused by every analysis function, avoiding redundant computation. Visualisation is fully decoupled from computation and is provided through 'ggplot2' methods that can be invoked, customised, and re-invoked at any time without re-running any analysis. It just requires a Digital Terrain Model, a start location and (optionally) destination locations. See Alberti (2019) <doi:10.1016/j.softx.2019.100331>.
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Diff between movecost versions 3.1.0 dated 2026-10-29 and 3.1.1 dated 2026-10-31
DESCRIPTION | 6 MD5 | 29 +- NEWS.md | 92 +++++++++ R/cost_functions.R | 419 +++++++++++++++++++++++++----------------- R/mc_accum.R | 9 R/mc_surface.R | 25 ++ README.md | 8 inst/doc/movecost.Rmd | 5 inst/doc/movecost.html | 56 ++--- inst/validation/README.md | 7 inst/validation/compare_v23.R | 14 + man/mc_accum.Rd | 9 man/mc_cost_functions.Rd | 206 ++++++++++++++------ tests/testthat/helper-grids.R | 4 tests/testthat/test-sources.R |only vignettes/movecost.Rmd | 5 16 files changed, 610 insertions(+), 284 deletions(-)
Title: Parsing Glycan Structure Text Representations
Description: Provides functions to parse glycan structure text representations
into 'glyrepr' glycan structures. Currently, it supports StrucGP-style,
pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, IUPAC-compact,
WURCS, LINUCS, Linear Code, GlycoCT, KCF, and GlycoWorkbench formats. It
also provides an automatic parser to detect the format and parse the
structure string.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glyparse versions 1.0.0 dated 2026-10-30 and 1.0.1 dated 2026-10-31
DESCRIPTION | 6 MD5 | 10 NEWS.md | 9 inst/doc/glyparse.html | 464 +++++++++++++++++++++++-------------------- src/native-api.cpp | 4 tests/testthat/test-native.R | 38 +++ 6 files changed, 304 insertions(+), 227 deletions(-)
Title: Generalized Additive Latent and Mixed Models
Description: Estimates generalized additive latent and
mixed models using maximum marginal likelihood,
as defined in Sorensen et al. (2023)
<doi:10.1007/s11336-023-09910-z>, which is an extension of Rabe-Hesketh and
Skrondal (2004)'s unifying framework for multilevel latent variable
modeling <doi:10.1007/BF02295939>. Efficient computation is done using sparse
matrix methods, Laplace approximation, and automatic differentiation. The
framework includes generalized multilevel models with heteroscedastic
residuals, mixed response types, factor loadings, smoothing splines,
crossed random effects, and combinations thereof. Syntax for model
formulation is close to 'lme4' (Bates et al. (2015)
<doi:10.18637/jss.v067.i01>) and 'PLmixed' (Rockwood and Jeon (2019)
<doi:10.1080/00273171.2018.1516541>).
Author: Oeystein Soerensen [aut, cre] ,
Douglas Bates [ctb],
Ben Bolker [ctb],
Martin Maechler [ctb],
Allan Leal [ctb],
Fabian Scheipl [ctb],
Steven Walker [ctb],
Simon Wood [ctb]
Maintainer: Oeystein Soerensen <oystein.sorensen@psykologi.uio.no>
Diff between galamm versions 0.4.1 dated 2026-08-31 and 0.4.2 dated 2026-10-31
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS.md | 5 +++++ R/data.R | 4 ++-- README.md | 2 +- build/partial.rdb |binary inst/doc/galamm.Rmd | 2 +- inst/doc/galamm.html | 7 +++---- inst/include/autodiff/common/eigen.hpp | 22 +++++++++++++++++++++- inst/include/autodiff/common/meta.hpp | 2 +- man/diet.Rd | 2 +- man/epilep.Rd | 2 +- src/RcppExports.cpp | 6 +++--- src/compute_galamm.cpp | 4 ++-- vignettes/galamm.Rmd | 2 +- 15 files changed, 60 insertions(+), 36 deletions(-)
Title: Structured Data Science Project Scaffolding
Description: Project scaffolding and workflow tools for reproducible data science.
Manages packages, tracks data integrity, handles database connections,
generates notebooks, and publishes to S3-compatible storage.
More information at <https://framework.table1.org>.
Author: Erik Westlund [aut, cre, cph]
Maintainer: Erik Westlund <erik@framework.pub>
Diff between framework versions 1.1.0 dated 2026-10-28 and 1.1.1 dated 2026-10-31
DESCRIPTION | 15 ++++---- MD5 | 34 +++++++++--------- NEWS.md | 25 +++++++++++++ R/data_write.R | 22 ++++++++++-- R/new_project.R | 11 ++---- R/project_create.R | 62 ++++++++++++++++++++++++++++++++-- R/renv.R | 4 +- R/scaffold.R | 31 ++++++++--------- R/security_audit.R | 57 +++++++++++++++++++++++++++++-- README.md | 2 - inst/gui/docs.db |binary inst/templates/test.R | 2 - man/dot-check_secrets_exposure.Rd |only man/framework-package.Rd | 8 ++-- man/git_security_audit.Rd | 2 + man/new_project.Rd | 2 - tests/testthat/test-data.R | 17 +++++++++ tests/testthat/test-scaffold.R | 17 +++++++++ tests/testthat/test-secrets-ignored.R |only 19 files changed, 251 insertions(+), 60 deletions(-)
Title: Extinction Date Estimation from Sighting Records
Description: Infers the extinction of a species from a time-ordered record of
sightings, collecting methods from the sighting-record and
stratigraphic-range literature under one interface. Includes endpoint
estimators (Robson & Whitlock, 1964; Strauss & Sadler, 1989; Roberts &
Solow, 2003), frequentist persistence tests (Solow, 1993a, 1993b; Burgman,
Grimson & Ferson, 1995; Solow & Roberts, 2003; Solow, 2005; McInerny,
Roberts, Davy & Cribb, 2006; Jarić & Ebenhard, 2010), Bayesian models
(Rout, Salomon & McCarthy, 2009; Caley & Barry, 2014), methods for
sightings of uncertain reliability (Thompson et al., 2013; Jarić &
Roberts, 2014; Lee et al., 2014; Brook, Buettel & Jarić, 2019; Kodikara
et al., 2020, 2021), models combining records and
surveys (Thompson et al., 2017, 2019), and confidence intervals on the
end-points of fossil ranges (Marshall, 1994, 1997; Weiss & Marshall,
1999). Every method is tested against the published examples of its
source p [...truncated...]
Author: Rodrigo Fonseca Villa [aut, cre]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>
Diff between EDE versions 0.2.0 dated 2026-09-21 and 0.3.0 dated 2026-10-31
DESCRIPTION | 41 ++-- MD5 | 147 ++++++++++----- NAMESPACE | 21 ++ NEWS.md | 113 +++++++++++ R/brook2019.R |only R/burgman1995.R | 222 +++++++++++++++++------ R/caley-barry2014.R |only R/compare.R |only R/data.R |only R/ede-estimate.R | 87 +++++++-- R/jaric-roberts2014.R | 58 ++++-- R/jaric2010.R | 56 +++-- R/kodikara2020.R |only R/kodikara2021.R |only R/lee2014.R |only R/marshall1994.R |only R/marshall1997.R |only R/mcinerny2006.R | 91 ++++----- R/ole.R | 35 ++- R/robson1964.R | 17 + R/rout2009.R |only R/solow-roberts2003.R | 40 +--- R/solow1993.R | 237 +++++++++++++++++------- R/solow1993b.R | 159 ++++++++++++---- R/solow2005.R | 46 ++-- R/solow2012.R |only R/strauss1989.R | 167 ++++++++++++++++- R/thompson2013.R |only R/thompson2017.R |only R/thompson2019.R |only R/weiss-marshall1999.R |only README.md | 182 ++++++++++++++----- data |only inst/doc/EDE.R | 12 + inst/doc/EDE.Rmd | 151 +++++++++++++-- inst/doc/EDE.html | 263 +++++++++++++++++++++------ man/brook2019.Rd |only man/burgman1995.Rd | 96 ++++++++-- man/caley_barry2014.Rd |only man/dodo.Rd |only man/ede_compare.Rd |only man/ede_estimate.Rd | 15 + man/extinct_birds.Rd |only man/ferret.Rd |only man/jaric2010.Rd | 45 +++- man/jaric_roberts2014.Rd | 47 +++- man/kodikara2020.Rd |only man/kodikara2021.Rd |only man/lee2014.Rd |only man/marshall1994.Rd |only man/marshall1994_trend.Rd |only man/marshall1997.Rd |only man/mcinerny2006.Rd | 45 ++-- man/monk_seal.Rd |only man/ole.Rd | 27 ++ man/orchid.Rd |only man/robson1964.Rd | 18 + man/rout2009.Rd |only man/rout2009_absences.Rd |only man/solow1993.Rd | 40 +++- man/solow1993_bayes.Rd |only man/solow1993b.Rd | 62 +++++- man/solow2005.Rd | 37 ++- man/solow_roberts2003.Rd | 28 +- man/strauss1989.Rd | 16 + man/strauss1989_bayes.Rd |only man/strauss1989_curve.Rd | 12 - man/thompson2013.Rd |only man/thompson2017.Rd |only man/thompson2019.Rd |only man/weiss_marshall1999.Rd |only man/weiss_marshall1999_prior.Rd |only tests/testthat/test-brook2019.R |only tests/testthat/test-burgman1995.R | 261 ++++++++++++++++++++------- tests/testthat/test-caley-barry2014.R |only tests/testthat/test-compare.R |only tests/testthat/test-edge-cases.R |only tests/testthat/test-jaric-roberts2014.R | 34 +++ tests/testthat/test-jaric2010.R | 112 +++++++---- tests/testthat/test-kodikara2020.R |only tests/testthat/test-kodikara2021.R |only tests/testthat/test-lee2014.R |only tests/testthat/test-marshall1994.R |only tests/testthat/test-marshall1997.R |only tests/testthat/test-mcinerny2006.R | 44 +++- tests/testthat/test-ole.R | 27 +- tests/testthat/test-print.R | 9 tests/testthat/test-rout2009.R |only tests/testthat/test-sighting-data.R | 2 tests/testthat/test-solow-roberts2003.R | 92 +++++---- tests/testthat/test-solow.R | 296 ++++++++++++++++++------------- tests/testthat/test-solow1993-bayes.R |only tests/testthat/test-solow1993b.R | 217 +++++++++++++++------- tests/testthat/test-solow2012.R |only tests/testthat/test-strauss1989.R | 111 +++++++++++ tests/testthat/test-thompson2013.R |only tests/testthat/test-thompson2017.R |only tests/testthat/test-thompson2019.R |only tests/testthat/test-weiss-marshall1999.R |only vignettes/EDE.Rmd | 151 +++++++++++++-- 100 files changed, 2969 insertions(+), 1020 deletions(-)
Title: Backward Joint Model for the Dynamic Prediction of Both
Time-to-Event and Longitudinal Outcomes
Description: Provides tools to fit joint models of multivariate longitudinal data and time-to-event data for dynamic prediction. It allows the joint prediction of both future time-to-event outcomes and future longitudinal outcomes conditional on survival. The models accommodate irregularly measured longitudinal data and competing risks outcomes. The use of the backward joint model enables fast and efficient computation, especially for applications with large sample sizes and many longitudinal variables. Methods without competing risks are described in Shen and Li (2021) <doi:10.1002/sim.9037>, and their extension to competing risks is described in Li et al. (2026) <doi:10.1007/s10985-026-09725-x>.
Author: Wenhao Li [aut, cre],
Liang Li [aut]
Maintainer: Wenhao Li <wenhaoli.jlu@gmail.com>
Diff between BJM versions 0.2.0 dated 2026-09-24 and 0.3.0 dated 2026-10-31
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Title: Beta-Binomial Models for Immune Cell Frequencies and Power
Calculations
Description: Provides tools to model overdispersed immune cell frequencies using Beta-Binomial generalized linear models.
Originally designed for memory B cells, the framework generalizes to evaluate rare
cellular immune responses across vaccinology, immuno-oncology, and related fields. Includes
method-of-moments dispersion estimation, likelihood ratio testing
across experimental arms, and Monte Carlo simulation to
calculate statistical power and Type I error rates. The methodologies
are directly motivated by the analysis of immunology data in
"Vaccination with mRNA-encoded membrane-anchored HIV envelope trimers
elicited tier 2 neutralizing antibodies in a phase 1 clinical trial"
(Parks et al. 2025) <doi:10.1126/scitranslmed.ady6831>.
Author: Andrew Shin [aut, cre]
Maintainer: Andrew Shin <ashin2@uw.edu>
Diff between BBMBC versions 0.1.0 dated 2026-10-07 and 1.0.1 dated 2026-10-31
DESCRIPTION | 22 +++++++++++----------- MD5 | 3 ++- NEWS.md |only 3 files changed, 13 insertions(+), 12 deletions(-)
Title: Bayesian Quantitative Decision-Making Framework for Binary,
Continuous and Time-to-Event Endpoints
Description: Bayesian quantitative decision-making for proof-of-concept
clinical trials with Go, NoGo and Gray decisions. A study is specified by
its sample sizes, conjugate prior distributions, external data borrowed
through power priors, a concurrent, external, hypothetical or fixed
control group, and a decision criterion based on the posterior or
posterior predictive probability of the treatment effect. The package
computes the decision for observed data, the operating characteristics
of a design under scenarios for the true parameters, the decision
thresholds that control the probabilities of false Go and false NoGo
decisions, and the observed data that lead to each decision. One
or two binary endpoints (Beta-binomial and Dirichlet-multinomial
models), one or two continuous endpoints (Normal-Inverse-chi-squared and
Normal-Inverse-Wishart models) and one time-to-event endpoint evaluated
by the milestone survival probability or the hazard ratio (exponential
model with Gamma priors) are supported, [...truncated...]
Author: Gosuke Homma [aut, cre],
Yusuke Yamaguchi [aut]
Maintainer: Gosuke Homma <my.name.is.gosuke@gmail.com>
Diff between BayesianQDM versions 1.0.0 dated 2026-10-30 and 1.0.1 dated 2026-10-31
DESCRIPTION | 6 MD5 | 124 +++++----- NEWS.md | 6 inst/validation/results/summary.md | 2 man/BayesianQDM-package.Rd | 74 +++--- man/borrow.Rd | 60 ++-- man/cellprob_binary2.Rd | 100 ++++---- man/conduct_tte.Rd | 156 ++++++------ man/criterion_posterior.Rd | 288 +++++++++++------------ man/criterion_predictive.Rd | 222 +++++++++--------- man/data_binary.Rd | 66 ++--- man/data_binary2.Rd | 78 +++--- man/data_continuous.Rd | 70 ++--- man/data_continuous2.Rd | 74 +++--- man/data_tte.Rd | 84 +++--- man/design_binary.Rd | 270 +++++++++++----------- man/design_binary2.Rd | 280 +++++++++++------------ man/design_continuous.Rd | 362 ++++++++++++++--------------- man/design_continuous2.Rd | 330 +++++++++++++-------------- man/design_tte.Rd | 450 ++++++++++++++++++------------------- man/format.qdm_borrow.Rd | 50 ++-- man/format.qdm_boundary.Rd | 82 +++--- man/format.qdm_calibration.Rd | 66 ++--- man/format.qdm_conduct.Rd | 48 +-- man/format.qdm_criterion.Rd | 50 ++-- man/format.qdm_data.Rd | 48 +-- man/format.qdm_decision.Rd | 60 ++-- man/format.qdm_design.Rd | 60 ++-- man/format.qdm_hypothetical.Rd | 48 +-- man/format.qdm_prior.Rd | 48 +-- man/hypothetical.Rd | 114 ++++----- man/pbetabinomdiff.Rd | 120 ++++----- man/pbetadiff.Rd | 126 +++++----- man/phazardratio.Rd | 116 ++++----- man/plot.qdm_boundary.Rd | 158 ++++++------ man/plot.qdm_calibration.Rd | 124 +++++----- man/plot.qdm_oc.Rd | 292 ++++++++++++------------ man/print.qdm_borrow.Rd | 44 +-- man/print.qdm_boundary.Rd | 90 +++---- man/print.qdm_calibration.Rd | 66 ++--- man/print.qdm_conduct.Rd | 44 +-- man/print.qdm_criterion.Rd | 46 +-- man/print.qdm_data.Rd | 44 +-- man/print.qdm_decision.Rd | 56 ++-- man/print.qdm_design.Rd | 58 ++-- man/print.qdm_hypothetical.Rd | 44 +-- man/print.qdm_oc.Rd | 60 ++-- man/print.qdm_prior.Rd | 44 +-- man/prior_beta.Rd | 64 ++--- man/prior_dirichlet.Rd | 82 +++--- man/prior_gamma.Rd | 80 +++--- man/prior_niw.Rd | 82 +++--- man/prior_nix.Rd | 84 +++--- man/prior_vague.Rd | 64 ++--- man/psurvdiff.Rd | 140 +++++------ man/ptdiff.Rd | 192 +++++++-------- man/qdm_boundary.Rd | 372 +++++++++++++++--------------- man/qdm_calibrate.Rd | 210 ++++++++--------- man/qdm_decide.Rd | 206 ++++++++-------- man/qdm_oc.Rd | 318 +++++++++++++------------- man/qdm_regions.Rd | 96 +++---- man/rdirichlet.Rd | 74 +++--- src/regions_continuous2.cpp | 7 63 files changed, 3695 insertions(+), 3684 deletions(-)
Title: Stress-Test a Pre-Specified Mixed Model for Repeated Measures
Description: Refits one pre-specified mixed model for repeated measures (MMRM)
under families of data and analytic perturbations (covariance structure,
degrees-of-freedom method and variance estimator, covariate set, analysis
population, alternative analysis data sets, leave-one-out deletions, crossed
specification grids, re-randomisation tests, delta-adjusted and
reference-based multiple imputation, and alternative estimators) and judges
every refit against the pre-specified estimate, confidence interval and
p-value. Classifies the result as robust, sensitive or fragile, with a
separate flag for marginal significance, and estimates by simulation the
probability that a planned design gives a significant and robust result.
Fitting uses 'mmrm' (Sabanes Bove et al., 2024,
<https://openpharma.github.io/mmrm/>) with 'SAS' 'PROC MIXED' conventions
for the least-squares-mean contrast,
Kenward-Roger adjustment and the corrected Akaike criterion. Reference-based
multiple imputation follows Carpenter, [...truncated...]
Author: Adam Sullivan [aut, cre, cph] ,
Nathan Hogan [ctb] ,
Capricor Therapeutics [fnd]
Maintainer: Adam Sullivan <asullivan@capricor.com>
Diff between ballast versions 0.6.1 dated 2026-10-30 and 0.7.4 dated 2026-10-31
DESCRIPTION | 9 +-- MD5 | 104 +++++++++++++++++++++----------------- NAMESPACE | 6 ++ NEWS.md | 52 +++++++++++++++++++ R/calibrate.R | 9 ++- R/census.R | 80 +++++++++++++++++++---------- R/deliverables.R | 6 +- R/design.R | 9 +-- R/direction.R |only R/display.R |only R/estimator.R | 19 +++++- R/families.R | 2 R/fit.R | 22 +++++--- R/fragility.R | 67 ++++++++++++++++-------- R/html.R | 1 R/mi.R | 6 +- R/path.R |only R/plan.R | 29 ++++++---- R/plot.R | 12 ++-- R/plots.R | 92 ++++++++++++++++++++++++--------- R/reference.R | 55 +++++++++++++++----- R/sap.R | 4 - R/simulate_rare.R |only R/standard.R | 10 ++- R/swarm.R | 34 +----------- README.md | 23 ++++++-- inst/CITATION | 4 - inst/doc/interpreting.Rmd | 8 +- inst/doc/interpreting.html | 13 ++-- inst/doc/missing-data.html | 12 ++-- inst/doc/quickstart.html | 71 +++++++++++++------------ inst/templates/sap_stress_test.md | 10 ++- man/path_changes.Rd |only man/plot.stress_census.Rd | 2 man/plot_forest.Rd |only man/plot_pcdf.Rd | 2 man/plot_pcurve.Rd | 19 +++++- man/plot_pstrip.Rd | 25 ++++++++- man/plot_swarm.Rd | 70 ++++++++++++++++--------- man/simulate_rare_trial.Rd |only man/standard_plan.Rd | 8 +- man/stress_calibrate.Rd | 5 + man/stress_census.Rd | 5 + man/stress_design.Rd | 5 + man/stress_direction.Rd |only man/stress_estimator.Rd | 9 ++- man/stress_fit.Rd | 3 - man/stress_fragility.Rd | 32 ++++++++--- man/stress_path.Rd |only man/stress_plan.Rd | 6 +- man/stress_reference.Rd | 13 ++++ man/stress_tipping.Rd | 4 + man/stress_verdict.Rd | 32 ++++++++--- man/summary.stress_census.Rd | 6 +- tests/testthat/test-plots.R | 36 +++++++++++++ tests/testthat/test-v07.R |only tests/testthat/test-v073.R |only tests/testthat/test-v074.R |only vignettes/interpreting.Rmd | 8 +- 59 files changed, 718 insertions(+), 341 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-10-28 1.0.6
2025-10-17 1.0.5
2025-09-17 1.0.4
2025-07-11 0.1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-20 1.1.5
2021-06-25 1.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-26 1.0.2
Title: Command Line Optional and Positional Argument Parser
Description: A command line parser to
be used with 'Rscript' to write "#!" shebang scripts that gracefully
accept positional and optional arguments and automatically generate usage.
Author: Trevor L. Davis [aut, cre] ,
Allen Day [ctb] ,
Python Software Foundation [ctb] ,
Paul Newell [ctb]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between argparse versions 2.3.1 dated 2025-10-08 and 2.3.3 dated 2026-10-31
DESCRIPTION | 8 - MD5 | 19 +- NEWS.md | 9 + R/argparse.R | 319 +++++++++++++++++++++++++++++++++++------ build/vignette.rds |binary inst/doc/argparse.html | 60 +++++-- man/ArgumentGroup.Rd |only man/ArgumentParser.Rd | 13 + man/Group.Rd |only man/MutuallyExclusiveGroup.Rd |only man/Parser.Rd |only man/Subparsers.Rd |only tests/testthat/test-argparse.R | 56 +++++++ 13 files changed, 411 insertions(+), 73 deletions(-)
Title: Panel Quantile Autoregressive Distributed Lag Model
Description: Estimation of Panel Quantile Autoregressive Distributed Lag
(PQARDL) models that combine panel ARDL methodology with quantile
regression. Supports Pooled Mean Group (PMG), Mean Group (MG), and
Dynamic Fixed Effects (DFE) estimators across multiple quantiles.
Computes long-run cointegrating parameters, error correction term speed
of adjustment, half-life of adjustment, and performs Wald tests for
parameter equality across quantiles. Based on the econometric frameworks
of Pesaran, Shin, and Smith (1999) <doi:10.1080/01621459.1999.10474156>,
Cho, Kim, and Shin (2015) <doi:10.1016/j.jeconom.2015.05.003>, and
Bildirici and Kayikci (2022).
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between xtpqardl versions 1.0.3 dated 2026-09-28 and 1.0.5 dated 2026-10-31
DESCRIPTION | 10 MD5 | 30 - NAMESPACE | 32 - NEWS.md | 34 + R/methods.R | 42 + R/wald_test.R | 313 ++++++++--- R/xtpqardl-package.R | 4 R/xtpqardl.R | 912 +++++++++++++++++++++++++++------- build/partial.rdb |binary inst/CITATION | 2 inst/validation |only man/compute_irf.Rd | 7 man/wald_test.Rd | 82 ++- man/xtpqardl-package.Rd | 4 man/xtpqardl.Rd | 257 +++++++-- tests/testthat/test-fixes-1-0-5.R |only tests/testthat/test-wald-pmg-inputs.R |only 17 files changed, 1387 insertions(+), 342 deletions(-)
Title: Durbin-Hausman Panel Cointegration Tests
Description: Implements the Durbin-Hausman panel cointegration tests of
Westerlund (2008) <doi:10.1002/jae.967>. The tests are robust to
cross-sectional dependence through common factor extraction using
principal components. Provides both group-mean (DHg) and panel (DHp)
test statistics with automatic factor number selection via information
criteria.
Author: Muhammad Alkhalaf [aut, cre, cph] ,
Joakim Westerlund [ctb]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between xtdhcoint versions 1.0.3 dated 2026-10-01 and 1.0.5 dated 2026-10-31
DESCRIPTION | 8 MD5 | 26 +- NAMESPACE | 3 NEWS.md | 33 ++ R/methods.R | 11 R/xtdhcoint-package.R | 7 R/xtdhcoint.R | 572 ++++++++++++++++++++++++++++++----------------- README.md | 12 build/partial.rdb |binary inst/CITATION | 4 inst/validation |only man/xtdhcoint-package.Rd | 4 man/xtdhcoint.Rd | 147 +++++++++--- tests |only 14 files changed, 578 insertions(+), 249 deletions(-)
Title: Panel Data Pre-Testing and Diagnostic Suite
Description: Pre-testing and diagnostic tools for panel data analysis.
Researchers should run these tests before any panel regression to
verify modelling assumptions. The package implements: (1) the Hsiao
(2014, <ISBN:978-1-107-65763-2>) homogeneity F-tests (F1/F2/F3),
Swamy (1970) <doi:10.2307/1913012> parameter heterogeneity test, and
Pesaran (2004) <doi:10.2139/ssrn.572504> cross-sectional dependence
test via xtpretest(); (2) missing-data detection, mechanism testing,
and imputation for unbalanced panels via xtmispanel(); (3)
quantile-regression cross-sectional dependence tests (T_tau and
T-tilde_tau statistics) of Demetrescu, Hosseinkouchack and Rodrigues
(2023) via xtcsdq(); and (4) the
panel quantile-regression slope homogeneity S-hat and D-hat
statistics of Galvao, Juhl, Montes-Rojas and Olmo (2017)
<doi:10.1093/jjfinec/nbx016> via xtqsh(). Together these
tests address three fundamental pre-testing questions: (i) are
slopes homogeneous? (ii) is there cross-sectional d [...truncated...]
Author: Muhammad Abdullah Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Abdullah Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between paneltests versions 1.0.6 dated 2026-09-28 and 1.0.8 dated 2026-10-31
DESCRIPTION | 9 MD5 | 31 +- NAMESPACE | 4 NEWS.md | 39 +++ R/xtcsdq.R | 2 R/xtkao.R |only R/xtpedroni.R |only R/xtpretest.R | 360 +++++++++++++++++++++++++-------- R/xtqsh.R | 4 build/partial.rdb |binary inst/CITATION | 2 inst/validation |only man/xtkao.Rd |only man/xtpedroni.Rd |only man/xtpretest.Rd | 111 ++++++++-- tests/testthat/test-xtmispanel.R | 2 tests/testthat/test-xtpedroni-xtkao.R |only tests/testthat/test-xtpretest-robust.R |only tests/testthat/test-xtpretest.R | 85 +++++++ 19 files changed, 525 insertions(+), 124 deletions(-)
Title: Unconstrained Numerical Optimization Algorithms
Description: Optimization algorithms implemented in R, including
conjugate gradient (CG), Broyden-Fletcher-Goldfarb-Shanno (BFGS) and the
limited memory BFGS (L-BFGS) methods. Most internal parameters can be set
through the call interface. The solvers hold up quite well for
higher-dimensional problems.
Author: James Melville [aut, cre]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between mize versions 0.2.5 dated 2026-02-09 and 0.3.0 dated 2026-10-31
mize-0.2.5/mize/tests/testthat/test_minfunc_armijo.R |only mize-0.2.5/mize/tests/testthat/test_minfunc_wolfe.R |only mize-0.2.5/mize/tests/testthat/test_mizer.R |only mize-0.2.5/mize/tests/testthat/test_polation.R |only mize-0.3.0/mize/DESCRIPTION | 19 mize-0.3.0/mize/MD5 | 163 mize-0.3.0/mize/NAMESPACE | 1 mize-0.3.0/mize/NEWS.md | 97 mize-0.3.0/mize/R/adaptive_restart.R | 38 mize-0.3.0/mize/R/bracket_zoom.R |only mize-0.3.0/mize/R/convergence.R | 137 mize-0.3.0/mize/R/gradient.R | 1094 ---- mize-0.3.0/mize/R/gradient_cg.R |only mize-0.3.0/mize/R/gradient_check.R |only mize-0.3.0/mize/R/gradient_newton.R |only mize-0.3.0/mize/R/gradient_quasi_newton.R |only mize-0.3.0/mize/R/gradient_requirements.R |only mize-0.3.0/mize/R/hager_zhang.R | 1363 +++--- mize-0.3.0/mize/R/learning_rate.R | 59 mize-0.3.0/mize/R/life_cycle.R | 130 mize-0.3.0/mize/R/line_search.R |only mize-0.3.0/mize/R/mize.R | 2230 ++-------- mize-0.3.0/mize/R/mize_convergence.R |only mize-0.3.0/mize/R/mize_factory.R |only mize-0.3.0/mize/R/mize_state.R |only mize-0.3.0/mize/R/momentum.R | 58 mize-0.3.0/mize/R/more_thuente.R | 1468 ++---- mize-0.3.0/mize/R/nesterov.R | 45 mize-0.3.0/mize/R/optimize.R | 549 +- mize-0.3.0/mize/R/polation.R | 257 - mize-0.3.0/mize/R/rasmussen.R | 516 +- mize-0.3.0/mize/R/schmidt.R | 1463 ++---- mize-0.3.0/mize/R/step_size.R | 288 - mize-0.3.0/mize/R/util.R | 70 mize-0.3.0/mize/R/validate.R | 6 mize-0.3.0/mize/R/wolfe.R | 1290 ++--- mize-0.3.0/mize/build/vignette.rds |binary mize-0.3.0/mize/inst/doc/convergence.R | 380 + mize-0.3.0/mize/inst/doc/convergence.Rmd | 738 ++- mize-0.3.0/mize/inst/doc/convergence.html | 822 ++- mize-0.3.0/mize/inst/doc/methods.R |only mize-0.3.0/mize/inst/doc/methods.Rmd |only mize-0.3.0/mize/inst/doc/methods.html |only mize-0.3.0/mize/inst/doc/mize.R | 363 - mize-0.3.0/mize/inst/doc/mize.Rmd | 1093 +--- mize-0.3.0/mize/inst/doc/mize.html | 1107 +--- mize-0.3.0/mize/inst/doc/mmds.R | 512 +- mize-0.3.0/mize/inst/doc/mmds.Rmd | 763 ++- mize-0.3.0/mize/inst/doc/mmds.html | 642 +- mize-0.3.0/mize/inst/doc/stateful.R | 585 ++ mize-0.3.0/mize/inst/doc/stateful.Rmd | 940 ++-- mize-0.3.0/mize/inst/doc/stateful.html | 1173 +++-- mize-0.3.0/mize/inst/extdata |only mize-0.3.0/mize/man/check_mize_convergence.Rd | 122 mize-0.3.0/mize/man/check_mize_gradient.Rd |only mize-0.3.0/mize/man/make_mize.Rd | 569 +- mize-0.3.0/mize/man/mize.Rd | 1709 ++++--- mize-0.3.0/mize/man/mize_init.Rd | 242 - mize-0.3.0/mize/man/mize_step.Rd | 213 mize-0.3.0/mize/man/mize_step_summary.Rd | 200 mize-0.3.0/mize/tests/testthat/helper_util.R | 84 mize-0.3.0/mize/tests/testthat/test_api.R | 735 ++- mize-0.3.0/mize/tests/testthat/test_bold_driver_diagnostics.R |only mize-0.3.0/mize/tests/testthat/test_bracket_zoom.R |only mize-0.3.0/mize/tests/testthat/test_budgets.R |only mize-0.3.0/mize/tests/testthat/test_cg.R | 354 - mize-0.3.0/mize/tests/testthat/test_cg_arithmetic.R |only mize-0.3.0/mize/tests/testthat/test_curvature_counts.R |only mize-0.3.0/mize/tests/testthat/test_diagnostics.R |only mize-0.3.0/mize/tests/testthat/test_gradient_check.R |only mize-0.3.0/mize/tests/testthat/test_hager_zhang.R | 865 +++ mize-0.3.0/mize/tests/testthat/test_hz_safeguard.R |only mize-0.3.0/mize/tests/testthat/test_line_search.R |only mize-0.3.0/mize/tests/testthat/test_line_search_conditions.R |only mize-0.3.0/mize/tests/testthat/test_line_search_traces.R |only mize-0.3.0/mize/tests/testthat/test_loop_api.R | 403 + mize-0.3.0/mize/tests/testthat/test_mize.R |only mize-0.3.0/mize/tests/testthat/test_mmds.R | 57 mize-0.3.0/mize/tests/testthat/test_momentum.R | 4 mize-0.3.0/mize/tests/testthat/test_more_thuente.R | 826 +++ mize-0.3.0/mize/tests/testthat/test_nesterov.R | 183 mize-0.3.0/mize/tests/testthat/test_newton.R | 192 mize-0.3.0/mize/tests/testthat/test_optimizer_diagnostics.R |only mize-0.3.0/mize/tests/testthat/test_optimizer_invariants.R |only mize-0.3.0/mize/tests/testthat/test_progress_storage.R |only mize-0.3.0/mize/tests/testthat/test_quadposdef.R | 21 mize-0.3.0/mize/tests/testthat/test_rasmussen.R | 440 + mize-0.3.0/mize/tests/testthat/test_rasmussen_cg.R | 229 - mize-0.3.0/mize/tests/testthat/test_regressions.R |only mize-0.3.0/mize/tests/testthat/test_scalar_inverse_hessian.R |only mize-0.3.0/mize/tests/testthat/test_schmidt_armijo.R |only mize-0.3.0/mize/tests/testthat/test_schmidt_wolfe.R |only mize-0.3.0/mize/tests/testthat/test_stable_norms.R |only mize-0.3.0/mize/tests/testthat/test_state_hooks.R |only mize-0.3.0/mize/tests/testthat/test_tn.R | 213 mize-0.3.0/mize/tests/testthat/test_validation.R |only mize-0.3.0/mize/tests/testthat/test_zero_momentum.R |only mize-0.3.0/mize/vignettes/articles |only mize-0.3.0/mize/vignettes/convergence.Rmd | 738 ++- mize-0.3.0/mize/vignettes/methods.Rmd |only mize-0.3.0/mize/vignettes/mize.Rmd | 1093 +--- mize-0.3.0/mize/vignettes/mmds.Rmd | 763 ++- mize-0.3.0/mize/vignettes/stateful.Rmd | 940 ++-- 103 files changed, 17003 insertions(+), 14651 deletions(-)
Title: Multiple Granger Causality Tests for Time Series and Panel Data
Description: Comprehensive suite of Granger causality tests for time series
and panel data. For time series: Toda-Yamamoto (1995)
<doi:10.1016/0304-4076(94)01616-8>, Fourier-based tests with single
frequency (Enders and Jones, 2016) <doi:10.1515/snde-2014-0101> and
cumulative frequencies (Nazlioglu et al., 2019)
<doi:10.1080/1540496X.2018.1434072>, quantile causality tests (Cai et al.,
2023) <doi:10.1016/j.frl.2023.104327>, and Bootstrap Fourier Granger
Causality in Quantiles (Cheng et al., 2021)
<doi:10.1007/s12076-020-00263-0>. For panel data: Panel Fourier
Toda-Yamamoto (Yilanci and Gorus, 2020)
<doi:10.1007/s11356-020-10092-9> and Panel Quantile Causality tests
(Wang and Nguyen, 2022) <doi:10.1080/1331677X.2021.1948436>, as well as
Group-Mean and Pooled Fully Modified OLS estimators for panel
cointegrating polynomial regressions (Wagner and Reichold, 2023)
<doi:10.1080/07474938.2023.2178141>. All tests include bootstrap
inference for robust p-valu [...truncated...]
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between caustests versions 1.1.4 dated 2026-09-30 and 1.1.7 dated 2026-10-31
DESCRIPTION | 7 MD5 | 35 - NEWS.md | 36 + R/caustests-package.R | 16 R/caustests.R | 102 ++- R/data.R | 2 R/xtpcaus.R | 747 ++++++++++++++++------ R/xtpcmg.R | 6 README.md | 14 build/partial.rdb |binary inst/CITATION | 2 inst/validation |only man/caustests-package.Rd | 16 man/caustests.Rd | 22 man/caustests_data.Rd | 2 man/xtpcaus.Rd | 173 ++++- man/xtpcmg.Rd | 2 tests/testthat/test-caustests-quantreg-warnings.R |only tests/testthat/test-xtpcaus-dh.R |only 19 files changed, 911 insertions(+), 271 deletions(-)
Title: Comprehensive ARDL: Panel, Bootstrap and Fourier Methods
Description: A unified framework for Autoregressive Distributed Lag (ARDL) modeling
and cointegration analysis. Implements Panel ARDL with Pooled Mean Group (PMG),
Mean Group (MG), and Dynamic Fixed Effects (DFE) estimators following
Pesaran, Shin and Smith (1999) <doi:10.1080/01621459.1999.10474156>.
Provides the bounds test of Pesaran, Shin and Smith (2001)
<doi:10.1002/jae.616> with the critical values of Kripfganz and Schneider
(2020) <doi:10.1111/obes.12377> and with recursive bootstrap critical
values following Bertelli, Vacca and Zoia (2022)
<doi:10.1016/j.econmod.2022.105987> and McNown, Sam and Goh (2018)
<doi:10.1080/00036846.2017.1366643>. Includes Quantile Nonlinear ARDL
(QNARDL) combining distributional and asymmetric effects based on Shin, Yu
and Greenwood-Nimmo (2014) <doi:10.1007/978-1-4899-8008-3_9>, Fourier ARDL
for modeling smooth structural breaks following Enders and Lee (2012)
<doi:10.1016/j.econlet.2012.04.081>, and Fourier (bootstrap [...truncated...]
Author: Muhammad Abdullah Alkhalaf [aut, cre] ,
Yeleazar Levchenko [ctb] )
Maintainer: Muhammad Abdullah Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between ardlverse versions 2.1.0 dated 2026-10-10 and 2.1.2 dated 2026-10-31
DESCRIPTION | 8 - MD5 | 13 + NEWS.md | 18 ++ R/panel_ardl.R | 273 ++++++++++++++++++++++++++++++++++----- README.md | 12 + inst/validation |only man/hausman_test.Rd | 128 +++++++++++++++++- tests/testthat/test-panel_ardl.R | 212 +++++++++++++++++++++++++++++- 8 files changed, 611 insertions(+), 53 deletions(-)
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol
for R. The Language Server protocol is used by an editor client to
integrate features like auto completion. See
<https://microsoft.github.io/language-server-protocol/> for details.
Author: Randy Lai [aut, cre],
Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.3.20 dated 2026-09-24 and 0.3.21 dated 2026-10-31
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R/selection.R | 22 R/semantic.R | 25 R/settings.R | 5 R/signature.R | 120 +- R/symbol.R | 94 + R/task.R | 231 +++ R/text-document-content.R |only R/type_hierarchy.R | 328 +---- R/utils.R | 139 ++ R/workspace.R | 673 ++++++++++- R/zzz.R | 7 README.md | 260 ++++ inst/benchmarks/README.md | 151 ++ inst/benchmarks/member-budget.R |only inst/benchmarks/member-metadata.R |only inst/benchmarks/package-cache.R |only inst/benchmarks/s3-dispatch.R |only inst/benchmarks/workspace-loading.py |only inst/examples |only src/completion.c | 150 ++ src/completion.h | 5 src/fsm.c | 10 src/json.c | 4 src/languageserver.c | 32 src/member.c |only src/member.h |only src/message_buffer.c |only src/message_buffer.h |only src/navigation.c | 403 ++++++ src/navigation.h | 5 src/parse_xml.c |only src/parse_xml.h |only src/provider_index.c | 144 +- src/search.c | 167 ++ src/search.h | 4 src/semantic.h | 4 src/signature.c | 669 ++++++++++- src/signature.h | 6 src/stdin.c |only src/stdin.h |only src/token.c | 85 + src/token.h | 2 tests/testthat.R | 34 tests/testthat/helper-provider.R | 10 tests/testthat/helper-utils.R | 46 tests/testthat/test-analysis-cache.R |only tests/testthat/test-backends-cli.R |only tests/testthat/test-backends.R |only tests/testthat/test-cache.R | 93 + tests/testthat/test-class-scope-completion.R |only tests/testthat/test-code-action-documentation.R |only tests/testthat/test-code-action.R | 48 tests/testthat/test-code-lens.R | 5 tests/testthat/test-color.R | 18 tests/testthat/test-completion-arguments.R |only tests/testthat/test-completion-member-context.R |only tests/testthat/test-completion-metadata.R |only tests/testthat/test-completion-resolve.R |only tests/testthat/test-completion.R | 1226 --------------------- tests/testthat/test-definition.R | 11 tests/testthat/test-diagnostics-configuration.R | 84 + tests/testthat/test-document-core.R | 152 ++ tests/testthat/test-formatting-background.R | 73 - 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More information about languageserver at CRAN
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Title: Tidy Access to Mongolian Official Statistics and Metadata
Description: A 'tidyverse'-friendly client for the public statistical services of
the National Statistics Office of Mongolia <https://data.1212.mn/>. Discover
tables and their dimensions, and fetch statistical data as 'tibble' data frames with
English or Mongolian labels. Periods are reported by their labels and
can be selected in any of the office's period formats, tables that have
moved within the catalogue are found automatically, and large requests
are split to stay within the server's limits. Source provenance and raw
observation symbols support reproducible exports. Experimental clients
provide access to the public data and metadata portals, including official
definitions, collection forms, classifications, and reviewed indicator
queries. Maps and joins by
statistical code are provided by the companion package 'mongolmaps'.
Author: Temuulen Enebish [aut, cre, cph],
National Statistics Office of Mongolia [cph]
Maintainer: Temuulen Enebish <temuulen@gmail.com>
Diff between mongolstats versions 0.2.0 dated 2026-07-09 and 0.4.0 dated 2026-10-31
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mongolstats-0.4.0/mongolstats/man/nso_options.Rd | 71 mongolstats-0.4.0/mongolstats/man/nso_package.Rd | 93 mongolstats-0.4.0/mongolstats/man/nso_period_date.Rd |only mongolstats-0.4.0/mongolstats/man/nso_period_seq.Rd | 10 mongolstats-0.4.0/mongolstats/man/nso_portal_data.Rd |only mongolstats-0.4.0/mongolstats/man/nso_portal_datamarts.Rd |only mongolstats-0.4.0/mongolstats/man/nso_provenance.Rd |only mongolstats-0.4.0/mongolstats/man/nso_rebuild_px_index.Rd | 72 mongolstats-0.4.0/mongolstats/man/nso_related.Rd |only mongolstats-0.4.0/mongolstats/man/nso_search.Rd | 73 mongolstats-0.4.0/mongolstats/man/nso_sectors.Rd | 46 mongolstats-0.4.0/mongolstats/man/nso_subsectors.Rd | 54 mongolstats-0.4.0/mongolstats/man/nso_table_info.Rd |only mongolstats-0.4.0/mongolstats/man/nso_table_meta.Rd | 6 mongolstats-0.4.0/mongolstats/man/nso_table_periods.Rd | 25 mongolstats-0.4.0/mongolstats/man/nso_tables.Rd |only mongolstats-0.4.0/mongolstats/man/nso_value_status.Rd |only 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|only mongolstats-0.4.0/mongolstats/tests/testthat/_snaps/validate.md |only mongolstats-0.4.0/mongolstats/tests/testthat/fixtures |only mongolstats-0.4.0/mongolstats/tests/testthat/helper-httptest2.R | 54 mongolstats-0.4.0/mongolstats/tests/testthat/px_data |only mongolstats-0.4.0/mongolstats/tests/testthat/px_dims |only mongolstats-0.4.0/mongolstats/tests/testthat/px_meta |only mongolstats-0.4.0/mongolstats/tests/testthat/px_sectors/px |only mongolstats-0.4.0/mongolstats/tests/testthat/test-cache.R | 101 mongolstats-0.4.0/mongolstats/tests/testthat/test-catalogue.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-config.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-data.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-deprecated.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-endpoints.R | 187 + mongolstats-0.4.0/mongolstats/tests/testthat/test-geography.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-helpers.R | 93 mongolstats-0.4.0/mongolstats/tests/testthat/test-http.R | 240 ++ mongolstats-0.4.0/mongolstats/tests/testthat/test-indicators.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-integration.R | 72 mongolstats-0.4.0/mongolstats/tests/testthat/test-joins.R | 155 + mongolstats-0.4.0/mongolstats/tests/testthat/test-labels.R | 208 - mongolstats-0.4.0/mongolstats/tests/testthat/test-map-selections.R | 13 mongolstats-0.4.0/mongolstats/tests/testthat/test-metadata.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-observations.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-offline.R | 37 mongolstats-0.4.0/mongolstats/tests/testthat/test-options.R | 102 mongolstats-0.4.0/mongolstats/tests/testthat/test-periods.R | 8 mongolstats-0.4.0/mongolstats/tests/testthat/test-portal.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-provenance.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-px-helpers.R | 56 mongolstats-0.4.0/mongolstats/tests/testthat/test-px-locate.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-px-meta.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-quality.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-query.R | 26 mongolstats-0.4.0/mongolstats/tests/testthat/test-recorded-http.R | 25 mongolstats-0.4.0/mongolstats/tests/testthat/test-recorded-search.R | 70 mongolstats-0.4.0/mongolstats/tests/testthat/test-response-json.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-services.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-time.R |only mongolstats-0.4.0/mongolstats/tests/testthat/test-validate.R | 20 mongolstats-0.4.0/mongolstats/vignettes/data-provenance.Rmd |only mongolstats-0.4.0/mongolstats/vignettes/discovery.Rmd | 743 +++--- mongolstats-0.4.0/mongolstats/vignettes/environmental-surveillance.Rmd | 1062 ++++------ mongolstats-0.4.0/mongolstats/vignettes/getting-started.Rmd | 646 ++---- mongolstats-0.4.0/mongolstats/vignettes/mapping.Rmd | 586 +++-- mongolstats-0.4.0/mongolstats/vignettes/ub-health-environment.Rmd | 631 ++--- 178 files changed, 10337 insertions(+), 8391 deletions(-)
Title: Multilevel Mediation Analysis
Description: Do multilevel mediation analysis with generalized additive multilevel models. The analysis method is described in Yu and Li (2020), "Third-Variable Effect Analysis with Multilevel Additive Models", PLoS ONE 15(10): e0241072.
Author: Qingzhao Yu [aut, cre],
Bin Li [aut]
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>
Diff between mlma versions 6.3-1 dated 2023-08-29 and 6.4-1 dated 2026-10-31
DESCRIPTION | 29 MD5 | 12 NAMESPACE | 45 R/mlma.r | 7468 +++++++++++++++++++++------------------------ build/vignette.rds |binary inst/doc/MLMAvignette.R | 156 inst/doc/MLMAvignette.html | 1443 ++++---- 7 files changed, 4499 insertions(+), 4654 deletions(-)