Title: Sea Currents to Connectivity Transformation
Description: Transformation of sea currents to connectivity data. Two files of
horizontal and vertical currents flows are transformed into connectivity data
in the form of 'sfnetwork', shapefile, edge list and adjacency matrix. An
application example is shown at Nagkoulis et al. (2025)
<doi:10.1016/j.dib.2024.111268>.
Author: Nikolaos Nagkoulis [aut] ,
Christos Adam [aut, cre] ,
Ioannis G. Mamoutos [aut] ,
Antonios D. Mazaris [aut] ,
Stelios Katsanevakis [aut]
Maintainer: Christos Adam <econp266@econ.soc.uoc.gr>
Diff between SeaGraphs versions 0.1.3 dated 2025-08-22 and 0.1.4 dated 2026-11-01
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 7 +++++++ README.md | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Introduction.Rmd | 5 +++-- inst/doc/Introduction.html | 7 +++---- vignettes/Introduction.Rmd | 5 +++-- 9 files changed, 28 insertions(+), 20 deletions(-)
Title: Constrained Delaunay Triangulation Meshes for Spatial 'SPDE'
Models
Description: Generate constrained Delaunay triangulation meshes for use with
stochastic partial differential equation (SPDE) spatial models
(Lindgren, Rue and Lindstroem 2011 <doi:10.1111/j.1467-9868.2011.00777.x>).
Provides automatic mesh generation from point coordinates with boundary
constraints, Ruppert refinement for mesh quality, finite element method
(FEM) matrix assembly (mass, stiffness, projection), barrier models,
spherical meshes via icosahedral subdivision, and metric graph meshes for
network geometries. Built on the 'CDT' header-only C++ library
(Amirkhanov 2024 <https://github.com/artem-ogre/CDT>). Designed as the
mesh backend for the 'tulpa' Bayesian hierarchical modelling engine but
usable standalone for any spatial triangulation task.
Author: Gilles Colling [aut, cre, cph] ,
Artem Amirkhanov [ctb, cph] ),
William C. Lenthe [ctb, cph] )
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between tulpaMesh versions 0.1.3 dated 2026-06-15 and 0.1.4 dated 2026-11-01
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Title: Nonlinear Longitudinal Process in Structural Equation Modeling
Description: Provides computational tools for nonlinear longitudinal models, in particular the intrinsically nonlinear models, in four scenarios: (1) univariate longitudinal processes with growth factors, with or without covariates including time-invariant covariates (TICs) and time-varying covariates (TVCs); (2) multivariate longitudinal processes that facilitate the assessment of associations and directional relationships between multiple longitudinal variables; (3) multiple-group models for scenarios (1) and (2) to evaluate differences among manifested groups, and (4) longitudinal mixture models for scenarios (1) and (2), with an assumption that trajectories are from multiple latent classes. Data can also be simulated from these models with the generating parameter values attached. The methods implemented are introduced in Liu (2025) <doi:10.3758/s13428-025-02596-4>.
Author: Jin Liu [aut, cre]
Maintainer: Jin Liu <Veronica.Liu0206@gmail.com>
Diff between nlpsem versions 0.4 dated 2026-03-31 and 1.0.0 dated 2026-11-01
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nlpsem-1.0.0/nlpsem/MD5 | 287 nlpsem-1.0.0/nlpsem/NAMESPACE | 18 nlpsem-1.0.0/nlpsem/NEWS.md | 486 + nlpsem-1.0.0/nlpsem/R/ClassSpecific.output_helper.R |only nlpsem-1.0.0/nlpsem/R/FitFig_helper.R | 1189 +- nlpsem-1.0.0/nlpsem/R/LCSM.mxModel_helper.R | 895 + nlpsem-1.0.0/nlpsem/R/LCSM.output_helper.R | 85 nlpsem-1.0.0/nlpsem/R/LGCM.mxModel_helper.R | 1223 +- nlpsem-1.0.0/nlpsem/R/LGCM.output_helper.R | 29 nlpsem-1.0.0/nlpsem/R/MED.Initial_helper.R | 151 nlpsem-1.0.0/nlpsem/R/MED.loading_helper.R | 199 nlpsem-1.0.0/nlpsem/R/MED.mxModel_helper.R | 893 + nlpsem-1.0.0/nlpsem/R/MED.output_helper.R | 87 nlpsem-1.0.0/nlpsem/R/MGM.mxModel_helper.R | 1955 ++-- nlpsem-1.0.0/nlpsem/R/MGM.output_helper.R | 70 nlpsem-1.0.0/nlpsem/R/MGroup.mxModel_helper.R | 22 nlpsem-1.0.0/nlpsem/R/MIX.initial_helper.R | 21 nlpsem-1.0.0/nlpsem/R/MIX.mxModel_helper.R | 21 nlpsem-1.0.0/nlpsem/R/MULTI.addpara_helper.R | 398 nlpsem-1.0.0/nlpsem/R/MULTI.initial_helper.R | 31 nlpsem-1.0.0/nlpsem/R/MULTI.loading_helper.R 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Title: Eclipse Plot: A Graphical Visualization for Risk of Bias
Assessments with ROBUST
Description: Provides a novel visualization tool for the ROBUST framework,
displaying both factual evaluation (Step 1) and judgment (Step 2).
Author: Pedro Rodrigues Vidor [aut, cre],
Yohan Casiraghi [ctb],
Sofia Simoni Rossi Fermo [ctb],
Adolfo Moraes de Souza [ctb],
Maicon Falavigna [ctb],
Patricia Klarmann Ziegelmann [ctb]
Maintainer: Pedro Rodrigues Vidor <pedro.vidor@ufrgs.br>
Diff between eclipseplot versions 0.9.7 dated 2026-05-10 and 0.9.9 dated 2026-11-01
DESCRIPTION | 23 - MD5 | 25 - NAMESPACE | 76 ++-- R/data.R | 55 +-- R/eclipseplot.R | 705 ++++++++++++++++++++++++++++++---------------- R/input.R |only man/check_eclipse_data.Rd |only man/eclipsedf.Rd | 54 ++- man/eclipseplot.Rd | 251 ++++++++-------- man/from_xlsx.Rd | 5 man/get_eclipse_data.Rd | 7 man/read_eclipse.Rd |only man/sample_brief.Rd | 8 man/sample_long.Rd | 7 man/save_eclipseplot.Rd | 10 15 files changed, 757 insertions(+), 469 deletions(-)
Title: Processing and Analyzing Dendrometer and Sap Flux Data
Description: Data management and cleaning for dendrometer and sap flux data, including gap detection, NA identification, missing value interpolation, and date conversion. The package also calculates multiple growth metrics of tree radial change data, including the cumulative growth over the entire observation period, daily cumulative growth, and growth changes between adjacent time intervals. Various approaches can be applied to calculate the night delta-Tmax required for sap flow (Peters et al., 2018, <doi:10.1111/nph.15241>) and subsequently estimate sap flow density (Granier, 1987, <doi:10.1093/treephys/3.4.309>). In addition, it supports the creation of simple time‑series point plots to visually display the dynamic changes in tree growth status or sap flow density during that period.
Author: Shuo Wen [aut, cre],
Xiaoyan Shang [ctb],
Wenjian Zhou [ctb],
Zhongjie Shi [ths],
Xiao Zhang [ths]
Maintainer: Shuo Wen <shuowen@caf.ac.cn>
Diff between DendroFlux versions 1.0.3 dated 2026-08-05 and 1.0.4 dated 2026-11-01
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NAMESPACE | 29 ++++++++++++++++++----------- NEWS.md | 7 +++++++ R/check.na.R | 4 ++-- R/readfile.R | 6 +++--- R/zzz.R | 2 +- 7 files changed, 43 insertions(+), 29 deletions(-)
Title: Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing
Data
Description: Implements a method for identifying and removing
the cell-cycle effect from scRNA-Seq data. The description of the
method is in Barron M. and Li J. (2016) <doi:10.1038/srep33892>. Identifying and removing
the cell-cycle effect from single-cell RNA-Sequencing data. Submitted.
Different from previous methods, ccRemover implements a mechanism that
formally tests whether a component is cell-cycle related or not, and thus
while it often thoroughly removes the cell-cycle effect, it preserves
other features/signals of interest in the data.
Author: Jun Li [aut, cre],
Martin Barron [aut]
Maintainer: Jun Li <jun.li@nd.edu>
Diff between ccRemover versions 1.0.4 dated 2017-08-19 and 1.0.5 dated 2026-11-01
DESCRIPTION | 6 MD5 | 13 NEWS.md |only build/vignette.rds |binary inst/doc/ccRemover_tutorial.R | 96 +-- inst/doc/ccRemover_tutorial.Rmd | 7 inst/doc/ccRemover_tutorial.html | 940 ++++++++++++++++++++++++++++----------- vignettes/ccRemover_tutorial.Rmd | 7 8 files changed, 755 insertions(+), 314 deletions(-)
Title: Sparse Vectors for Use in Data Frames
Description: Provides sparse vectors powered by ALTREP (Alternative
Representations for R Objects) that behave like regular vectors, and
can thus be used in data frames. Also provides tools to convert
between sparse matrices and data frames with sparse columns and
functions to interact with sparse vectors.
Author: Emil Hvitfeldt [aut, cre] ,
Davis Vaughan [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between sparsevctrs versions 0.3.6 dated 2026-01-27 and 0.4.0 dated 2026-11-01
sparsevctrs-0.3.6/sparsevctrs/R/arithmatic.R |only sparsevctrs-0.3.6/sparsevctrs/man/sparse-arithmatic-scalar.Rd |only sparsevctrs-0.3.6/sparsevctrs/man/sparse-arithmatic.Rd |only sparsevctrs-0.3.6/sparsevctrs/src/sparse-arithmatic.c |only sparsevctrs-0.3.6/sparsevctrs/src/sparse-arithmatic.h |only sparsevctrs-0.3.6/sparsevctrs/tests/testthat/test-arithmatic.R |only sparsevctrs-0.4.0/sparsevctrs/DESCRIPTION | 8 sparsevctrs-0.4.0/sparsevctrs/MD5 | 219 ++- sparsevctrs-0.4.0/sparsevctrs/NEWS.md | 78 + sparsevctrs-0.4.0/sparsevctrs/R/arithmetic.R |only sparsevctrs-0.4.0/sparsevctrs/R/coerce.R | 112 + sparsevctrs-0.4.0/sparsevctrs/R/extractors.R | 6 sparsevctrs-0.4.0/sparsevctrs/R/sparse_character.R | 10 sparsevctrs-0.4.0/sparsevctrs/R/sparse_double.R | 8 sparsevctrs-0.4.0/sparsevctrs/R/sparse_dummy.R | 19 sparsevctrs-0.4.0/sparsevctrs/R/sparse_integer.R | 4 sparsevctrs-0.4.0/sparsevctrs/R/sparse_lag.R | 4 sparsevctrs-0.4.0/sparsevctrs/R/sparse_logical.R | 4 sparsevctrs-0.4.0/sparsevctrs/R/sparse_mean.R | 17 sparsevctrs-0.4.0/sparsevctrs/R/sparse_median.R | 4 sparsevctrs-0.4.0/sparsevctrs/R/sparse_replace_na.R | 7 sparsevctrs-0.4.0/sparsevctrs/R/sparse_var.R | 39 sparsevctrs-0.4.0/sparsevctrs/R/type-predicates.R | 14 sparsevctrs-0.4.0/sparsevctrs/R/zzz.R |only sparsevctrs-0.4.0/sparsevctrs/build/vignette.rds |binary sparsevctrs-0.4.0/sparsevctrs/man/coerce_to_sparse_data_frame.Rd | 21 sparsevctrs-0.4.0/sparsevctrs/man/coerce_to_sparse_tibble.Rd | 1 sparsevctrs-0.4.0/sparsevctrs/man/sparse-arithmetic-scalar.Rd |only sparsevctrs-0.4.0/sparsevctrs/man/sparse-arithmetic.Rd |only sparsevctrs-0.4.0/sparsevctrs/man/sparse_character.Rd | 6 sparsevctrs-0.4.0/sparsevctrs/man/sparse_double.Rd | 2 sparsevctrs-0.4.0/sparsevctrs/man/sparse_dummy.Rd | 2 sparsevctrs-0.4.0/sparsevctrs/man/sparse_lag.Rd | 3 sparsevctrs-0.4.0/sparsevctrs/man/sparse_mean.Rd | 6 sparsevctrs-0.4.0/sparsevctrs/man/sparse_var.Rd | 8 sparsevctrs-0.4.0/sparsevctrs/man/sparsevctrs-package.Rd | 5 sparsevctrs-0.4.0/sparsevctrs/src/Makevars |only sparsevctrs-0.4.0/sparsevctrs/src/altrep-sparse-common.c |only sparsevctrs-0.4.0/sparsevctrs/src/altrep-sparse-common.h |only sparsevctrs-0.4.0/sparsevctrs/src/altrep-sparse-double.c | 531 +++------ sparsevctrs-0.4.0/sparsevctrs/src/altrep-sparse-double.h | 6 sparsevctrs-0.4.0/sparsevctrs/src/altrep-sparse-integer.c | 582 +++------- sparsevctrs-0.4.0/sparsevctrs/src/altrep-sparse-integer.h | 6 sparsevctrs-0.4.0/sparsevctrs/src/altrep-sparse-logical.c | 459 ++----- sparsevctrs-0.4.0/sparsevctrs/src/altrep-sparse-logical.h |only sparsevctrs-0.4.0/sparsevctrs/src/altrep-sparse-string.c | 387 ++---- sparsevctrs-0.4.0/sparsevctrs/src/altrep-sparse-string.h |only sparsevctrs-0.4.0/sparsevctrs/src/decl |only sparsevctrs-0.4.0/sparsevctrs/src/init.c | 144 +- sparsevctrs-0.4.0/sparsevctrs/src/rlang |only sparsevctrs-0.4.0/sparsevctrs/src/rlang.c |only sparsevctrs-0.4.0/sparsevctrs/src/sparse-arithmetic-scalar.c |only sparsevctrs-0.4.0/sparsevctrs/src/sparse-arithmetic-scalar.h |only sparsevctrs-0.4.0/sparsevctrs/src/sparse-arithmetic.c |only sparsevctrs-0.4.0/sparsevctrs/src/sparse-arithmetic.h |only sparsevctrs-0.4.0/sparsevctrs/src/sparse-coerce.c |only sparsevctrs-0.4.0/sparsevctrs/src/sparse-dummy.c | 413 +++---- sparsevctrs-0.4.0/sparsevctrs/src/sparse-dummy.h | 6 sparsevctrs-0.4.0/sparsevctrs/src/sparse-extractors.c | 17 sparsevctrs-0.4.0/sparsevctrs/src/sparse-extractors.h | 8 sparsevctrs-0.4.0/sparsevctrs/src/sparse-utils.c | 303 +++-- sparsevctrs-0.4.0/sparsevctrs/src/sparse-utils.h | 52 sparsevctrs-0.4.0/sparsevctrs/src/sparsevctrs-core.h |only sparsevctrs-0.4.0/sparsevctrs/tests/testthat/_snaps/arithmetic.md |only sparsevctrs-0.4.0/sparsevctrs/tests/testthat/_snaps/coerce.md | 64 + sparsevctrs-0.4.0/sparsevctrs/tests/testthat/_snaps/sparse_double.md | 40 sparsevctrs-0.4.0/sparsevctrs/tests/testthat/_snaps/sparse_integer.md | 16 sparsevctrs-0.4.0/sparsevctrs/tests/testthat/_snaps/sparse_lag.md |only sparsevctrs-0.4.0/sparsevctrs/tests/testthat/_snaps/sparse_sqrt.md |only sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-arithmetic.R |only sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-coerce.R | 174 ++ sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-extractors.R | 23 sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-sparse_character.R | 66 + sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-sparse_double.R | 381 ++++++ sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-sparse_dummy.R | 129 ++ sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-sparse_integer.R | 251 ++++ sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-sparse_lag.R | 7 sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-sparse_logical.R | 82 + sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-sparse_mean.R | 39 sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-sparse_median.R | 6 sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-sparse_replace_na.R | 33 sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-sparse_sqrt.R | 10 sparsevctrs-0.4.0/sparsevctrs/tests/testthat/test-sparse_var.R | 25 83 files changed, 3067 insertions(+), 1800 deletions(-)
Title: Flexible Multidimensional Scaling and 'smacof' Extensions
Description: Flexible multidimensional scaling (MDS) methods and extensions to the package 'smacof' as described in Rusch, De Leeuw, Mair & Hornik (2026) <doi:10.18637/jss.v117.i07>. This package contains various functions, wrappers, methods and classes for fitting, plotting and displaying a large number of different flexible MDS models. These are: Torgerson scaling (Torgerson, 1958, ISBN:978-0471879459) with powers, Sammon mapping (Sammon, 1969, <doi:10.1109/T-C.1969.222678>) with ratio and interval optimal scaling, Multiscale MDS (Ramsay, 1977, <doi:10.1007/BF02294052>) with ratio and interval optimal scaling, s-stress MDS (ALSCAL; Takane, Young & De Leeuw, 1977, <doi:10.1007/BF02293745>) with ratio and interval optimal scaling, elastic scaling (McGee, 1966, <doi:10.1111/j.2044-8317.1966.tb00367.x>) with ratio and interval optimal scaling, r-stress MDS (De Leeuw, Groenen & Mair, 2016, <https://rpubs.com/deleeuw/142619>) with ratio, interval, splines [...truncated...]
Author: Thomas Rusch [aut, cre] ,
Jan de Leeuw [aut],
Lisha Chen [aut],
Patrick Mair [aut]
Maintainer: Thomas Rusch <thomas.rusch@wu.ac.at>
Diff between smacofx versions 1.22-0 dated 2025-09-18 and 1.26-0 dated 2026-11-01
smacofx-1.22-0/smacofx/man/doubleCenter.Rd |only smacofx-1.22-0/smacofx/man/enorm.Rd |only smacofx-1.22-0/smacofx/man/mkBmat.Rd |only smacofx-1.22-0/smacofx/man/mkPower.Rd |only smacofx-1.22-0/smacofx/man/pdist.Rd |only smacofx-1.22-0/smacofx/man/procruster.Rd |only smacofx-1.22-0/smacofx/man/secularEq.Rd |only smacofx-1.22-0/smacofx/man/smacofxDeleteOne.Rd |only smacofx-1.22-0/smacofx/man/sqdist.Rd |only smacofx-1.26-0/smacofx/DESCRIPTION | 10 smacofx-1.26-0/smacofx/MD5 | 181 ++++++++--------- smacofx-1.26-0/smacofx/NAMESPACE | 82 ++++--- smacofx-1.26-0/smacofx/NEWS | 16 + smacofx-1.26-0/smacofx/R/BankingCrisesDistances-data.R | 2 smacofx-1.26-0/smacofx/R/alignplot.R | 7 smacofx-1.26-0/smacofx/R/alscal.R | 2 smacofx-1.26-0/smacofx/R/apStressMin.R | 4 smacofx-1.26-0/smacofx/R/bcmds.R | 18 + smacofx-1.26-0/smacofx/R/bcsdistance.R | 2 smacofx-1.26-0/smacofx/R/biplotmds.bcmds.R | 2 smacofx-1.26-0/smacofx/R/biplotmds.lmds.R | 2 smacofx-1.26-0/smacofx/R/biplotmds.smacofP.R | 2 smacofx-1.26-0/smacofx/R/clca.R | 2 smacofx-1.26-0/smacofx/R/clda.R | 2 smacofx-1.26-0/smacofx/R/cmdscale.R | 6 smacofx-1.26-0/smacofx/R/conf_adjust.R | 2 smacofx-1.26-0/smacofx/R/corpsepaint-data.R | 2 smacofx-1.26-0/smacofx/R/doubleCenter.R | 1 smacofx-1.26-0/smacofx/R/elscal.R | 6 smacofx-1.26-0/smacofx/R/enorm.R | 4 smacofx-1.26-0/smacofx/R/koller-data.R | 2 smacofx-1.26-0/smacofx/R/lmds.R | 30 +- smacofx-1.26-0/smacofx/R/mkBmat.R | 1 smacofx-1.26-0/smacofx/R/mkPower.R | 1 smacofx-1.26-0/smacofx/R/multiscale.R | 18 + smacofx-1.26-0/smacofx/R/opmds.R | 4 smacofx-1.26-0/smacofx/R/pdist.R | 1 smacofx-1.26-0/smacofx/R/plot.cmdscalex.R | 3 smacofx-1.26-0/smacofx/R/plot.smacofP.R | 4 smacofx-1.26-0/smacofx/R/powerStressFast.R | 4 smacofx-1.26-0/smacofx/R/powerStressMin.R | 7 smacofx-1.26-0/smacofx/R/print.cmdscalex.R | 12 - smacofx-1.26-0/smacofx/R/print.sammon.R | 12 - smacofx-1.26-0/smacofx/R/print.smacofP.R | 12 - smacofx-1.26-0/smacofx/R/procruster.R | 1 smacofx-1.26-0/smacofx/R/rStressMin.R | 4 smacofx-1.26-0/smacofx/R/ringdat.R | 2 smacofx-1.26-0/smacofx/R/rpowerStressMin.R | 2 smacofx-1.26-0/smacofx/R/sammon.R | 8 smacofx-1.26-0/smacofx/R/sammonmap.R | 4 smacofx-1.26-0/smacofx/R/scale_adjust.R | 3 smacofx-1.26-0/smacofx/R/secularEq.R | 1 smacofx-1.26-0/smacofx/R/smacofx-package.R | 12 - smacofx-1.26-0/smacofx/R/smacofxDeleteOne.R | 1 smacofx-1.26-0/smacofx/R/spheredat.R | 2 smacofx-1.26-0/smacofx/R/spmdda.R | 55 +++-- smacofx-1.26-0/smacofx/R/spmds.R | 107 +++++----- smacofx-1.26-0/smacofx/R/sqdist.R | 2 smacofx-1.26-0/smacofx/R/summary.cmdscalex.R | 15 + smacofx-1.26-0/smacofx/R/summary.sammon.R | 14 + smacofx-1.26-0/smacofx/R/summary.smacofP.R | 14 - smacofx-1.26-0/smacofx/R/udat.R | 4 smacofx-1.26-0/smacofx/inst |only smacofx-1.26-0/smacofx/man/BankingCrisesDistances.Rd | 2 smacofx-1.26-0/smacofx/man/alignplot.Rd | 4 smacofx-1.26-0/smacofx/man/alscal.Rd | 2 smacofx-1.26-0/smacofx/man/apStressMin.Rd | 4 smacofx-1.26-0/smacofx/man/bcmds.Rd | 12 - smacofx-1.26-0/smacofx/man/bcsdistance.Rd | 2 smacofx-1.26-0/smacofx/man/biplotmds.bcmds.Rd | 4 smacofx-1.26-0/smacofx/man/biplotmds.lmds.Rd | 4 smacofx-1.26-0/smacofx/man/biplotmds.smacofP.Rd | 4 smacofx-1.26-0/smacofx/man/clca.Rd | 2 smacofx-1.26-0/smacofx/man/clda.Rd | 2 smacofx-1.26-0/smacofx/man/cmdscale.Rd | 8 smacofx-1.26-0/smacofx/man/conf_adjust.Rd | 4 smacofx-1.26-0/smacofx/man/corpsepaint.Rd | 2 smacofx-1.26-0/smacofx/man/elscal.Rd | 15 + smacofx-1.26-0/smacofx/man/koller.Rd | 2 smacofx-1.26-0/smacofx/man/lmds.Rd | 12 - smacofx-1.26-0/smacofx/man/multiscale.Rd | 32 ++- smacofx-1.26-0/smacofx/man/opmds.Rd | 4 smacofx-1.26-0/smacofx/man/plot.smacofP.Rd | 2 smacofx-1.26-0/smacofx/man/powerStressFast.Rd | 4 smacofx-1.26-0/smacofx/man/powerStressMin.Rd | 4 smacofx-1.26-0/smacofx/man/print.cmdscalex.Rd |only smacofx-1.26-0/smacofx/man/print.sammon.Rd |only smacofx-1.26-0/smacofx/man/print.smacofP.Rd |only smacofx-1.26-0/smacofx/man/rStressMin.Rd | 4 smacofx-1.26-0/smacofx/man/ringdat.Rd | 2 smacofx-1.26-0/smacofx/man/rpowerStressMin.Rd | 2 smacofx-1.26-0/smacofx/man/sammon.Rd | 10 smacofx-1.26-0/smacofx/man/sammonmap.Rd | 4 smacofx-1.26-0/smacofx/man/smacofx-package.Rd | 13 - smacofx-1.26-0/smacofx/man/spheredat.Rd | 2 smacofx-1.26-0/smacofx/man/spmdda.Rd | 30 +- smacofx-1.26-0/smacofx/man/spmds.Rd | 39 +-- smacofx-1.26-0/smacofx/man/udat.Rd | 2 98 files changed, 561 insertions(+), 395 deletions(-)
Title: Liquid Glass Design Themes for 'shiny' Applications
Description: Provides drop-in Liquid Glass themes for 'shiny'. Call
glass_theme() and pass the result as theme = to fluidPage(),
navbarPage(), or any 'bslib'-aware page function to get
translucent surfaces, backdrop blur, and system typography on
'Bootstrap' components. Includes light and dark presets with
runtime switching and an OS-following 'auto' mode, an iOS-style
intensity control from Ultra Clear to Tinted, optional
persistence of the look, named wallpaper scenes, helpers to
match 'ggplot2', 'plotly', 'gt', and 'DT' output to the glass pack,
a flatten mode for print and screenshots, and documented CSS tokens.
Author: Eric Anderson [aut, cre, cph],
The Inter Project Authors [ctb, cph]
Maintainer: Eric Anderson <eric.ray.anderson@gmail.com>
Diff between shinyglass versions 0.5.0 dated 2026-10-11 and 0.6.0 dated 2026-11-01
DESCRIPTION | 14 - MD5 | 75 ++++---- NEWS.md | 76 ++++++++ R/glass-theme.R | 124 ++++++++++++- R/shinyglass-package.R | 25 +- README.md | 141 +++++++-------- build/vignette.rds |binary inst/COPYRIGHTS |only inst/WORDLIST | 8 inst/doc/compatibility.Rmd | 2 inst/doc/compatibility.html | 4 inst/doc/migrating.Rmd | 2 inst/doc/migrating.html | 2 inst/doc/playground.Rmd | 4 inst/doc/playground.html | 4 inst/doc/shinychat.Rmd | 2 inst/doc/shinychat.html | 2 inst/doc/shinyglass.R | 6 inst/doc/shinyglass.Rmd | 16 - inst/doc/shinyglass.html | 20 -- inst/examples/_shared/phone-preview.R | 2 inst/examples/bslib-dashboard.R | 25 ++ inst/examples/inputs-gallery.R | 21 ++ inst/examples/shinychat-glass/app.R | 18 + inst/fonts |only inst/js/glass-ios27.js | 140 +++++++++++++++ inst/js/shiny-glass.js | 80 ++++++++ inst/scss/glass.scss | 289 ++++++++++++++++++++++++++++++-- man/glass_theme.Rd | 35 +++ man/shinyglass-package.Rd | 29 +-- man/update_glass_theme.Rd | 12 + tests/testthat/test-deploy-core5.R | 25 ++ tests/testthat/test-motion-style-font.R |only tests/testthat/test-phone-preview.R | 2 vignettes/compatibility.Rmd | 2 vignettes/migrating.Rmd | 2 vignettes/playground.Rmd | 4 vignettes/shinychat.Rmd | 2 vignettes/shinyglass.Rmd | 16 - 39 files changed, 1010 insertions(+), 221 deletions(-)
Title: Read Paradox Database Files
Description: Provides a simple and efficient way to read data from Paradox
database files (.db) directly into R as modern 'tibble' data frames.
It uses the underlying 'pxlib' C library to handle the low-level file format
details and provides a clean, user-friendly R interface.
Author: Daniil Popov [aut, cre]
Maintainer: Daniil Popov <popov.daniil@gmail.com>
Diff between Rparadox versions 0.3.0 dated 2026-07-09 and 0.3.1 dated 2026-11-01
DESCRIPTION | 8 MD5 | 26 +- NAMESPACE | 6 NEWS.md | 49 +++++ build/vignette.rds |binary inst/doc/Rparadox.html | 4 src/gregor.c | 5 src/paradox.c | 335 ++++++++++++++++++++++++++--------- src/paradox.h | 13 + src/px_io.c | 142 ++++++++++++++ src/px_io.h | 2 src/px_misc.c | 25 +- src/pxversion.h | 2 tests/testthat/helper-long-fixture.R |only tests/testthat/test-long-fields.R |only 15 files changed, 505 insertions(+), 112 deletions(-)
Title: Regression Modeling Strategies
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. 'rms' is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families and types of censoring
with optional random effects, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. 'rms' works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression.
Author: Frank E Harrell Jr [aut, cre]
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between rms versions 8.2-0 dated 2026-10-29 and 8.2-1 dated 2026-11-01
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- NEWS | 3 +++ src/Makevars |only 4 files changed, 10 insertions(+), 6 deletions(-)
Title: Matched-Null Tests for Cluster-Count Claims
Description: Builds matched nulls for cluster-count claims: synthetic twins of a
dataset that preserve every marginal distribution exactly and the
correlation matrix approximately, while containing no cluster structure by
construction. A reported number of clusters or "types" can then be tested
against what the data's own margins and covariance already produce, using
any clustering pipeline. A t-copula option is a sensitivity check that adds
tail dependence to the reference, so an apparent excess of clusters can be
rerun against a heavier-tailed reference; neither outcome of that rerun
establishes that types exist. Implements the matched-null procedure of Meng (2026) "Types
Without Taxa" <doi:10.17605/OSF.IO/2EKCG>.
Author: Miura Meng [aut, cre]
Maintainer: Miura Meng <haomeng797@gmail.com>
Diff between matchednull versions 0.2.1 dated 2026-08-21 and 0.2.2 dated 2026-11-01
DESCRIPTION | 23 ++-- MD5 | 26 ++--- NEWS.md | 46 ++++++++ R/copula_null.R | 67 ++++++++---- R/matched_null_test.R | 145 +++++++++++++++++++--------- README.md | 49 +++++---- inst/CITATION | 4 inst/doc/matchednull.R | 2 inst/doc/matchednull.Rmd | 69 +++++++------ inst/doc/matchednull.html | 103 +++++++++++-------- man/copula_null.Rd | 67 ++++++++---- man/matched_null_test.Rd | 92 ++++++++++++----- tests/testthat/test-matched_null_test.R | 165 +++++++++++++++++++++++++++++++- vignettes/matchednull.Rmd | 69 +++++++------ 14 files changed, 658 insertions(+), 269 deletions(-)
Title: Grab Longitudinal Employer-Household Dynamics (LEHD) Flat Files
Description: Designed to query Longitudinal Employer-Household Dynamics
(LEHD) workplace/residential association and origin-destination flat
files and optionally aggregate Census block-level data to block group,
tract, county, or state. Also provides analytical functions for commute
flow statistics, longitudinal change, and earnings tier distributions.
Data comes from the LODES FTP server
<https://lehd.ces.census.gov/data/lodes/LODES8/>.
Author: Jamaal Green [cre, aut] ,
Liming Wang [aut],
Dillon Mahmoudi [aut] ,
Matthew Rogers [ctb],
Kyle Walker [ctb],
Eli Pousson [ctb]
Maintainer: Jamaal Green <jamaal.green@gmail.com>
Diff between lehdr versions 1.2.0 dated 2026-08-22 and 1.2.1 dated 2026-11-01
DESCRIPTION | 8 ++++---- LICENSE | 4 ++-- MD5 | 27 ++++++++++++++------------- NAMESPACE | 4 ++-- NEWS.md |only R/lehdr.R | 4 ++-- R/zzz.R | 2 +- README.md | 8 ++++---- build/vignette.rds |binary inst/CITATION | 2 +- inst/doc/getting_started.Rmd | 9 +++++---- inst/doc/getting_started.html | 10 +++++----- man/grab_lodes.Rd | 2 +- tests/testthat/test-lehdr.R | 34 ++++++++++++++++++++++++++++++++-- vignettes/getting_started.Rmd | 9 +++++---- 15 files changed, 78 insertions(+), 45 deletions(-)
Title: Multilevel Latent Profile, Class and Transition Models
Description: Fits single-level and multilevel latent profile and class models,
latent transition models, and mixture regression and growth models for
studying unobserved heterogeneity. Supported measurement models accommodate
continuous, categorical, ordinal, count and mixed indicators. Provides
model comparison, parameter inference, classification diagnostics and
graphical summaries, with additional methods for membership covariates,
staged estimation and analyses of external variables that account for
classification error. Observed-data likelihood methods are available for
incomplete indicators, and supported transition models can be represented
as networks using the 'tna' package. The multilevel latent class
formulation follows Vermunt
(2003) <doi:10.1111/j.0081-1750.2003.t01-1-00131.x>.
Author: Mohammed Saqr [aut, cre, cph] ,
Sonsoles Lopez-Pernas [aut]
Maintainer: Mohammed Saqr <saqr@saqr.me>
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insertions(+), 11041 deletions(-)
Title: Estimate Inverse Probability Weights
Description: Functions to estimate the probability to receive the observed treatment, based on
individual characteristics. The inverse of these probabilities can be used as weights when
estimating causal effects from observational data via marginal structural models. Both point
treatment situations and longitudinal studies can be analysed. The same functions can be used to
correct for informative censoring.
Author: Hung Thai Tran [aut, cre],
Willem M. van der Wal [aut],
Ronald B. Geskus [aut]
Maintainer: Hung Thai Tran <hungtt@oucru.org>
Diff between ipw versions 1.3.1 dated 2026-10-30 and 1.3.2 dated 2026-11-01
ipw-1.3.1/ipw/man/figures/README-pressure-1.png |only ipw-1.3.2/ipw/DESCRIPTION | 24 ipw-1.3.2/ipw/MD5 | 29 ipw-1.3.2/ipw/NAMESPACE | 7 ipw-1.3.2/ipw/NEWS.md | 50 ipw-1.3.2/ipw/R/ipwpoint.R | 504 +++----- ipw-1.3.2/ipw/R/ipwtm.R | 1291 +++++++++++------------ ipw-1.3.2/ipw/R/utils.R |only ipw-1.3.2/ipw/README.md | 4 ipw-1.3.2/ipw/man/ipwpoint.Rd | 5 ipw-1.3.2/ipw/man/ipwtm.Rd | 8 ipw-1.3.2/ipw/tests/testthat/fixtures |only ipw-1.3.2/ipw/tests/testthat/helper-regression.R |only ipw-1.3.2/ipw/tests/testthat/test-ipwplot.R | 125 +- ipw-1.3.2/ipw/tests/testthat/test-ipwpoint.R | 406 ++++--- ipw-1.3.2/ipw/tests/testthat/test-ipwtm.R | 396 ++++--- ipw-1.3.2/ipw/tests/testthat/test-regression.R |only ipw-1.3.2/ipw/tests/testthat/test-tstartfun.R | 137 +- 18 files changed, 1537 insertions(+), 1449 deletions(-)
Title: Heteroscedasticity Diagnostics for Linear Models
Description: Provides a unified set of heteroscedasticity diagnostics for
linear-model workflows. It implements classical auxiliary-regression
tests, including those of White (1980) <doi:10.2307/1912934>, Breusch
and Pagan (1979) <doi:10.2307/1911963>, Koenker (1981)
<doi:10.1016/0304-4076(81)90062-2>, Goldfeld and Quandt (1965)
<doi:10.1080/01621459.1965.10480811> and Harvey (1976)
<doi:10.2307/1913974>; the score test of Cook and Weisberg (1983)
<doi:10.1093/biomet/70.1.1>; the ARCH test of Engle (1982)
<doi:10.2307/1912773>; and group-wise tests of equal variance, including
those of Bartlett (1937) <doi:10.1098/rspa.1937.0109>, Brown and Forsythe
(1974) <doi:10.1080/01621459.1974.10482955> and Hartley (1950)
<doi:10.2307/2332383>. Resampling and scalable variants, simulation
utilities, diagnostic visualisation and remediation helpers share a
consistent interface designed for reproducible statistical workflows and
integration with common [...truncated...]
Author: Diogo Ribeiro [aut, cre]
Maintainer: Diogo Ribeiro <dfr@esmad.ipp.pt>
Diff between heteroTests versions 0.16.0 dated 2026-10-29 and 0.17.0 dated 2026-11-01
DESCRIPTION | 8 MD5 | 233 +- NEWS.md | 1145 ++++++++++ R/additional_tests.R | 334 +- R/advancedDiagnostics.R | 4 R/advancedRemediation.R | 13 R/bootstrap_methods.R | 594 +++-- R/ecosystem_integration.R | 765 ++++++ R/error_handling.R | 2 R/fitRobust.R | 50 R/fitWLS.R | 50 R/intelligent_recommendations.R | 39 R/interface.R | 341 --- R/model_context.R | 653 ++++- R/modern_diagnostics.R | 117 - R/performArchLMTest.R | 3 R/performBPRandomEffectsTest.R | 4 R/performDavidianCarrollTest.R | 15 R/performGQTest.R | 13 R/performHarrisonMcCabeTest.R | 35 R/performHarveyTest.R | 5 R/performInfluenceDiagnostics.R | 7 R/performMcLeodLiTest.R | 3 R/performNCVTest.R | 5 R/performPesaranTest.R | 21 R/performRESETTest.R | 8 R/performScatterDiagnostic.R | 4 R/performSpearmanTest.R | 6 R/performSpreadLevelTest.R | 7 R/performVIFDiagnostic.R | 5 R/performVarianceFormTest.R | 14 R/performWhiteTest.R | 136 - R/performance.R | 396 +-- R/plotDiagnostics.R | 37 R/quantile_regression_joint.R | 13 R/robust_implementations.R | 167 - R/runDiagnostics.R | 5 R/runHeteroTests.R | 84 R/utils.R | 56 R/validation.R | 16 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 8 inst/doc/bibliography.html | 2 inst/doc/comprehensive_guide.html | 4 inst/doc/real_world_case_studies.html | 2 inst/doc/statistical_theory_and_implementation.html | 2 inst/doc/using_heteroTests.html | 2 man/autoCompareRemediations.Rd | 4 man/fitRobust.Rd | 21 man/fitWLS.Rd | 29 man/generateHeteroRecommendations.Rd | 17 man/performBPTestRobust.Rd | 35 man/performBPTestStreaming.Rd | 20 man/performBartlettTest.Rd | 8 man/performBrownForsytheTest.Rd | 8 man/performFlignerKilleenTest.Rd | 8 man/performGQTest.Rd | 9 man/performGlejserTest.Rd | 8 man/performHarrisonMcCabeTest.Rd | 20 man/performHartleyFmaxTest.Rd | 8 man/performKoenkerTestStreaming.Rd | 17 man/performLeveneTest.Rd | 8 man/performOBrienTest.Rd | 8 man/performParkTest.Rd | 8 man/performPesaranTest.Rd | 9 man/performQuantileRegressionTest.Rd | 9 man/performRESETTest.Rd | 10 man/performSpatialHeteroTest.Rd | 6 man/performStudentizedBPTest.Rd | 9 man/performSzroeterTest.Rd | 21 man/performVarianceFormTest.Rd | 10 man/performWhiteTest.Rd | 6 man/performWhiteTestBootstrap.Rd | 68 man/performWhiteTestRobust.Rd | 33 man/performWhiteTestStreaming.Rd | 64 man/performWildBootstrapTest.Rd | 38 man/rbootstrap_test_statistic.Rd | 89 man/runHeteroTests.Rd | 33 man/rvalidateModelInputs.Rd | 6 man/test_results.Rd | 75 man/tidy.hetero_test.Rd | 26 tests/testthat/helper-model-context.R | 679 +++++ tests/testthat/helper-numbers.R |only tests/testthat/test-additional-tests.R | 31 tests/testthat/test-boxm.R | 11 tests/testthat/test-cache-contract.R | 90 tests/testthat/test-cook-weisberg-entry.R | 8 tests/testthat/test-data-alignment-guard.R | 88 tests/testthat/test-deprecated-names.R | 2 tests/testthat/test-ecosystem-integration.R | 10 tests/testthat/test-enhanced-merge.R | 2 tests/testthat/test-fitwls-reestimation.R | 46 tests/testthat/test-fixed-effects-warning.R | 13 tests/testthat/test-fligner-killeen-ties.R | 20 tests/testthat/test-glejser-robust.R | 12 tests/testthat/test-grouped-fits.R | 2 tests/testthat/test-harrison-mccabe.R | 7 tests/testthat/test-input-validation.R | 10 tests/testthat/test-koenker-studentized.R | 2 tests/testthat/test-model-context.R | 2267 ++++++++++++++++++-- tests/testthat/test-model-data-convention.R | 30 tests/testthat/test-model-eligibility.R | 35 tests/testthat/test-pass-a-reference.R | 4 tests/testthat/test-performWhiteTest.R | 90 tests/testthat/test-property-based.R | 14 tests/testthat/test-quantile-joint-reference.R | 6 tests/testthat/test-r-prefixed-and-test.R | 8 tests/testthat/test-registry-systems.R | 2 tests/testthat/test-resampling-refits.R | 76 tests/testthat/test-robust-methods.R | 15 tests/testthat/test-simulation-names.R | 5 tests/testthat/test-streaming.R | 216 + tests/testthat/test-suite-summary.R | 4 tests/testthat/test-survey-designs.R | 4 tests/testthat/test-szroeter-registry.R | 18 tests/testthat/test-validation.R | 2 tests/testthat/test-variance-form.R | 4 118 files changed, 7908 insertions(+), 2106 deletions(-)
Title: Calculate Heat Stress Indices
Description: Calculates heat-stress indices from meteorological observations
using shared psychrometric calculations and consistent method-specific
input handling. Methods include the physically based outdoor wet-bulb
globe temperature model described by Liljegren et al. (2008)
<doi:10.1080/15459620802310770>, wet-bulb temperature and heat-index
calculations, and established closed-form heat-stress indices. Provides
row-level diagnostics, configurable physical controls, vectorized batch
processing, and optional parallel execution for the Liljegren method.
It is an independently maintained fork of 'HeatStress'; its Liljegren
implementation is not a bitwise-compatible port of the original program.
Author: Yifei Zheng [aut, cre] ,
Ana Casanueva [ctb]
Maintainer: Yifei Zheng <zyf0717@gmail.com>
Diff between HeatStressR versions 2.4.0 dated 2026-09-18 and 3.0.0 dated 2026-11-01
HeatStressR-2.4.0/HeatStressR/R/apparentTemp.R |only HeatStressR-2.4.0/HeatStressR/R/calZenith.R |only HeatStressR-2.4.0/HeatStressR/R/dewp2hurs.R |only HeatStressR-2.4.0/HeatStressR/R/discomInd.R |only HeatStressR-2.4.0/HeatStressR/R/effectiveTemp.R |only HeatStressR-2.4.0/HeatStressR/R/esat.R |only HeatStressR-2.4.0/HeatStressR/R/hi.R |only HeatStressR-2.4.0/HeatStressR/R/humidex.R |only HeatStressR-2.4.0/HeatStressR/R/indexShow.R |only HeatStressR-2.4.0/HeatStressR/R/is.leapyear.R |only HeatStressR-2.4.0/HeatStressR/R/rhooks.R |only HeatStressR-2.4.0/HeatStressR/R/swbgt.R |only HeatStressR-2.4.0/HeatStressR/R/tashurs2dewp.R |only HeatStressR-2.4.0/HeatStressR/R/tashurs2vap.pres.R |only HeatStressR-2.4.0/HeatStressR/R/wbgt.Bernard.R |only HeatStressR-2.4.0/HeatStressR/R/wbgt.Liljegren.R |only HeatStressR-2.4.0/HeatStressR/R/wbt.Stull.R |only HeatStressR-2.4.0/HeatStressR/inst/master |only HeatStressR-2.4.0/HeatStressR/man/apparentTemp.Rd |only HeatStressR-2.4.0/HeatStressR/man/calZenith.Rd |only HeatStressR-2.4.0/HeatStressR/man/dewp2hurs.Rd |only HeatStressR-2.4.0/HeatStressR/man/discomInd.Rd |only HeatStressR-2.4.0/HeatStressR/man/effectiveTemp.Rd |only HeatStressR-2.4.0/HeatStressR/man/esat.Rd |only HeatStressR-2.4.0/HeatStressR/man/fTg.Rd |only HeatStressR-2.4.0/HeatStressR/man/fTnwb.Rd |only HeatStressR-2.4.0/HeatStressR/man/hi.Rd |only HeatStressR-2.4.0/HeatStressR/man/humidex.Rd |only HeatStressR-2.4.0/HeatStressR/man/indexShow.Rd |only HeatStressR-2.4.0/HeatStressR/man/is.leapyear.Rd |only HeatStressR-2.4.0/HeatStressR/man/swbgt.Rd |only HeatStressR-2.4.0/HeatStressR/man/tashurs2vap.pres.Rd |only HeatStressR-2.4.0/HeatStressR/man/wbgt.Bernard.Rd |only HeatStressR-2.4.0/HeatStressR/man/wbgt.Liljegren.Rd |only HeatStressR-2.4.0/HeatStressR/man/wbt.Stull.Rd |only HeatStressR-2.4.0/HeatStressR/tests/testthat/test.public-api-compatibility.R |only HeatStressR-3.0.0/HeatStressR/DESCRIPTION | 46 +- HeatStressR-3.0.0/HeatStressR/MD5 | 141 +++--- HeatStressR-3.0.0/HeatStressR/NAMESPACE | 17 HeatStressR-3.0.0/HeatStressR/NEWS | 29 + HeatStressR-3.0.0/HeatStressR/R/HeatStressR.R | 94 +--- HeatStressR-3.0.0/HeatStressR/R/bernard-kernel.R |only HeatStressR-3.0.0/HeatStressR/R/compat-v2.R |only HeatStressR-3.0.0/HeatStressR/R/conversions.R |only HeatStressR-3.0.0/HeatStressR/R/deprecation.R |only HeatStressR-3.0.0/HeatStressR/R/fTg.R | 29 - HeatStressR-3.0.0/HeatStressR/R/fTnwb.R | 26 - HeatStressR-3.0.0/HeatStressR/R/heat_indices.R | 162 ++++--- HeatStressR-3.0.0/HeatStressR/R/index-kernels.R | 34 - HeatStressR-3.0.0/HeatStressR/R/indices.R |only HeatStressR-3.0.0/HeatStressR/R/input-contract.R |only HeatStressR-3.0.0/HeatStressR/R/method-registry.R |only HeatStressR-3.0.0/HeatStressR/R/method-results.R |only HeatStressR-3.0.0/HeatStressR/R/psychrometrics.R |only HeatStressR-3.0.0/HeatStressR/R/solar-geometry.R |only HeatStressR-3.0.0/HeatStressR/R/wbgt-api.R |only HeatStressR-3.0.0/HeatStressR/R/wbgt-core.R |only HeatStressR-3.0.0/HeatStressR/R/wbgt-parallel.R | 85 +-- HeatStressR-3.0.0/HeatStressR/R/wbgt-tolerances.R | 4 HeatStressR-3.0.0/HeatStressR/README.md | 230 ++++------ HeatStressR-3.0.0/HeatStressR/build |only HeatStressR-3.0.0/HeatStressR/inst/CITATION | 34 - HeatStressR-3.0.0/HeatStressR/inst/DEPRECATIONS.md |only HeatStressR-3.0.0/HeatStressR/inst/doc/README.md | 14 HeatStressR-3.0.0/HeatStressR/inst/doc/benchmarking.md | 42 - HeatStressR-3.0.0/HeatStressR/inst/doc/liljegren-inputs.md | 121 +---- HeatStressR-3.0.0/HeatStressR/inst/doc/migration-v3.md |only HeatStressR-3.0.0/HeatStressR/inst/doc/non-liljegren-indices.md | 69 +-- HeatStressR-3.0.0/HeatStressR/inst/doc/original-c-differences.md | 2 HeatStressR-3.0.0/HeatStressR/inst/doc/parallelism.md | 91 --- HeatStressR-3.0.0/HeatStressR/inst/doc/validation-and-diagnostics.md |only HeatStressR-3.0.0/HeatStressR/man/HeatStressR-deprecated.Rd |only HeatStressR-3.0.0/HeatStressR/man/HeatStressR.Rd | 99 +--- HeatStressR-3.0.0/HeatStressR/man/heat-stress-indices.Rd |only HeatStressR-3.0.0/HeatStressR/man/heat_indices.Rd | 89 ++- HeatStressR-3.0.0/HeatStressR/man/heat_methods.Rd |only HeatStressR-3.0.0/HeatStressR/man/humidity-conversions.Rd |only HeatStressR-3.0.0/HeatStressR/man/quote-data_obs-quote.Rd | 18 HeatStressR-3.0.0/HeatStressR/man/quote-data_wbgt.Bernard-quote.Rd | 4 HeatStressR-3.0.0/HeatStressR/man/quote-data_wbgt.Liljegren-quote.Rd | 4 HeatStressR-3.0.0/HeatStressR/man/quote-data_wbt.Stull-quote.Rd | 2 HeatStressR-3.0.0/HeatStressR/man/solar_zenith.Rd |only HeatStressR-3.0.0/HeatStressR/man/wbgt_bernard.Rd |only HeatStressR-3.0.0/HeatStressR/man/wbgt_liljegren.Rd |only HeatStressR-3.0.0/HeatStressR/tests/testthat/fixtures |only HeatStressR-3.0.0/HeatStressR/tests/testthat/helper-reference-calZenith.R | 10 HeatStressR-3.0.0/HeatStressR/tests/testthat/helper-reference-wbgt.Liljegren.R | 22 HeatStressR-3.0.0/HeatStressR/tests/testthat/test.calZenith.R | 26 + HeatStressR-3.0.0/HeatStressR/tests/testthat/test.compat-v2.R |only HeatStressR-3.0.0/HeatStressR/tests/testthat/test.core-independence.R |only HeatStressR-3.0.0/HeatStressR/tests/testthat/test.heat-indices.R |only HeatStressR-3.0.0/HeatStressR/tests/testthat/test.hi.R | 51 -- HeatStressR-3.0.0/HeatStressR/tests/testthat/test.modern-reference.R |only HeatStressR-3.0.0/HeatStressR/tests/testthat/test.non-liljegren-kernels.R | 108 +--- HeatStressR-3.0.0/HeatStressR/tests/testthat/test.v3-contracts.R |only HeatStressR-3.0.0/HeatStressR/tests/testthat/test.wbgt-diagnostics.R | 15 HeatStressR-3.0.0/HeatStressR/tests/testthat/test.wbgt-input-contracts.R | 12 HeatStressR-3.0.0/HeatStressR/tests/testthat/test.wbgt-liljegren-tolerances.R | 10 HeatStressR-3.0.0/HeatStressR/tests/testthat/test.wbgt-parallel.R | 14 HeatStressR-3.0.0/HeatStressR/tests/testthat/test.wbgt-preprocessing.R | 91 +-- HeatStressR-3.0.0/HeatStressR/tests/testthat/test.wbgt-v3.R |only HeatStressR-3.0.0/HeatStressR/tests/testthat/test.wbgt.Bernard.R | 38 - HeatStressR-3.0.0/HeatStressR/tests/testthat/test.wbt.Stull.R | 2 103 files changed, 783 insertions(+), 1102 deletions(-)
Title: Generalizability Theory for LLM Subjective Tasks
Description: Studies the reliability and generalizability of subjective
judgments produced by large language models (LLMs), including annotation,
rating, and structured LLM-as-a-judge tasks. Specifies evaluator, prompt,
generation, and repeated-run facets through crossed or explicitly nested
random sources with configurable item interactions. Fits univariate models,
joint Gaussian models, and joint discrete models for binary, ordinal, and
unordered categorical outcomes, with source-specific covariance. Gaussian
models use exact balanced likelihood, with a bounded observed-row route
for incomplete univariate panels. Discrete models use dense or sparse
first-order Laplace approximation with Gaussian latent random effects.
Supported balanced decision studies compare evaluator, prompt, and
replication allocations using observed Gaussian or explicitly requested
latent binary and ordinal reliability, with random or fixed facets after
Brennan (2001). 'OpenMx' Gaussian fits report asymptotic Wald standard [...truncated...]
Author: Jin Liu [aut, cre, cph]
Maintainer: Jin Liu <Veronica.Liu0206@gmail.com>
Diff between Gtheory4LLM versions 0.5.0 dated 2026-10-10 and 1.0.0 dated 2026-11-01
DESCRIPTION | 49 - MD5 | 180 +++-- NAMESPACE | 24 NEWS.md | 577 ++++++++++++++++ R/batch.R | 21 R/bootstrap.R |only R/categorical_targets.R |only R/design.R | 157 ++++ R/diagnostics_stages.R | 4 R/discrete.R | 703 +++++++++++++++++-- R/discrete_boundary_escape.R |only R/discrete_check.R |only R/discrete_dense.R | 2 R/discrete_gradient.R |only R/discrete_information.R |only R/discrete_mode.R | 60 + R/discrete_response.R | 389 +++++++++- R/discrete_simulation.R |only R/discrete_sparse.R | 191 ++++- R/discrete_sparse_envelope.R |only R/discrete_sparse_mode.R | 176 ++++ R/examples.R | 39 - R/family.R | 27 R/fit.R | 172 ++++ R/gaussian.R | 97 ++ R/gaussian_engine.R | 384 ++++++---- R/gaussian_initializer.R |only R/gaussian_lme4.R |only R/gaussian_observed.R |only R/gaussian_retry.R | 74 +- R/methods.R | 133 +++ R/planning.R | 187 +++++ R/preflight.R | 151 +++- R/reliability.R | 275 ++++++- R/report.R | 71 + R/selected_inverse.R |only R/simulation.R | 335 ++++++++- README.md | 307 +++++++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/LLM-workflow.R | 16 inst/doc/LLM-workflow.Rmd | 90 ++ inst/doc/LLM-workflow.html | 926 +++++++++++++++----------- inst/doc/study-planning.R | 8 inst/doc/study-planning.Rmd | 14 inst/doc/study-planning.html | 47 - inst/examples/native_1_0_reference.R |only inst/examples/native_1_0_workflow.R |only man/Gtheory4LLM-package.Rd | 49 - man/gaussian_observed.Rd |only man/gt_batch.Rd | 12 man/gt_bootstrap.Rd |only man/gt_categorical_target.Rd |only man/gt_control.Rd | 272 +++++++ man/gt_design.Rd | 19 man/gt_diagnostics.Rd | 62 + man/gt_dstudy.Rd | 23 man/gt_example.Rd | 18 man/gt_family.Rd | 13 man/gt_fit.Rd | 141 +++ man/gt_fit_methods.Rd | 32 man/gt_laplace_check.Rd |only man/gt_pilot_plan.Rd | 235 +++++- man/gt_plan.Rd | 110 ++- man/gt_preflight.Rd | 68 + man/gt_reliability.Rd | 101 ++ man/gt_report.Rd | 20 man/gt_score.Rd | 6 man/gt_simulate.Rd | 88 +- man/gtheory_datasets.Rd | 2 man/gtheory_drug_review.Rd | 2 man/gtheory_hate_speech.Rd | 8 man/gtheory_mental_health.Rd | 2 man/plot.gt_reliability.Rd | 25 src |only tests/fixtures |only tests/package-batch.R | 178 ++-- tests/package-binary-probabilities.R | 26 tests/package-bootstrap.R |only tests/package-categorical-target-moments.R |only tests/package-categorical-target-numerics.R |only tests/package-characterization.R | 22 tests/package-development.R |only tests/package-discrete-boundary-escape.R |only tests/package-discrete-domain.R |only tests/package-discrete-gradient-fit.R |only tests/package-discrete-gradient-information.R |only tests/package-discrete-gradient.R |only tests/package-discrete-information.R |only tests/package-discrete-safety.R | 67 + tests/package-discrete-scaling.R |only tests/package-engines.R |only tests/package-formula-interface.R |only tests/package-gaussian-initialization.R |only tests/package-laplace-check.R |only tests/package-native-workflow.R |only tests/package-nominal-reliability.R |only tests/package-nominal-tails.R |only tests/package-ordinal-tail.R |only tests/package-preflight.R | 23 tests/package-reporting.R | 2 tests/package-response-third.R |only tests/package-retry-behavior.R | 7 tests/package-selected-inverse.R |only tests/package-simulation.R | 5 tests/package-smoke.R | 29 tests/package-sparse-envelope.R |only tests/package-sparse-estimated.R |only tests/package-sparse-resources.R |only tests/package-standard-methods.R | 13 tests/package-user-interface.R | 35 vignettes/LLM-workflow.Rmd | 90 ++ vignettes/study-planning.Rmd | 14 113 files changed, 6270 insertions(+), 1435 deletions(-)
Title: Fourier CUSUM Cointegration Test
Description: Implements a Fourier CUSUM test for the null hypothesis of
cointegration in the presence of smooth structural change. The
cointegrating regression is estimated by dynamic OLS with a Fourier pair
at a fractional or integer frequency, and the residual CUSUM statistic
of Xiao and Phillips (2002) <doi:10.1016/S0304-4076(01)00103-8> is
scaled by a Bartlett long-run variance estimate. A sup-F pre-test
decides whether the Fourier terms are needed, and bootstrap critical
values that replicate the frequency search give correct size when a
break is present.
Author: Taha Zaghdoudi [aut, cre]
Maintainer: Taha Zaghdoudi <zedtaha@gmail.com>
Diff between FCUSUM versions 1.0.0 dated 2025-11-12 and 1.1.0 dated 2026-11-01
FCUSUM-1.0.0/FCUSUM/R/aicc.R |only FCUSUM-1.1.0/FCUSUM/DESCRIPTION | 33 +- FCUSUM-1.1.0/FCUSUM/MD5 | 26 + FCUSUM-1.1.0/FCUSUM/NAMESPACE | 14 FCUSUM-1.1.0/FCUSUM/NEWS.md |only FCUSUM-1.1.0/FCUSUM/R/critical_values.R | 178 ++++++------ FCUSUM-1.1.0/FCUSUM/R/fcum.R | 449 +++++++++++++++++++++----------- FCUSUM-1.1.0/FCUSUM/R/internal.R |only FCUSUM-1.1.0/FCUSUM/R/lrv.R |only FCUSUM-1.1.0/FCUSUM/R/methods.R | 164 +++++++---- FCUSUM-1.1.0/FCUSUM/R/simulate.R |only FCUSUM-1.1.0/FCUSUM/R/sysdata.rda |only FCUSUM-1.1.0/FCUSUM/man/fcum.Rd | 194 ++++++++++--- FCUSUM-1.1.0/FCUSUM/man/fcum_cv_sim.Rd |only FCUSUM-1.1.0/FCUSUM/man/plot.fcum.Rd |only FCUSUM-1.1.0/FCUSUM/man/print.fcum.Rd | 10 FCUSUM-1.1.0/FCUSUM/man/summary.fcum.Rd | 12 FCUSUM-1.1.0/FCUSUM/tests |only 18 files changed, 705 insertions(+), 375 deletions(-)
Title: Download and Tidy Australian Clean Energy Regulator Data
Description: Fetch Australian Clean Energy Regulator data on carbon
credits, safeguard mechanism facilities, renewable energy
certificates, and greenhouse gas reporting. Provides tidy access
to the Australian Carbon Credit Unit (ACCU) Scheme project
register, Safeguard Mechanism baselines and covered emissions,
Large-scale Renewable Energy Target (LRET) power station
accreditations, Small-scale Renewable Energy Scheme (SRES)
installation data, the National Greenhouse and Energy Reporting
(NGER) scheme, and Quarterly Carbon Market Reports
<https://cer.gov.au/markets/reports-and-data>. Includes a
post-Chubb ACCU integrity layer (Chubb 2022 Independent Review),
Safeguard reform handling (declining industry baselines from
July 2023), National Greenhouse and Energy Reporting scope
discipline (Scope 1 / Scope 2 market vs location / Climate
Active), reconciliation against the Quarterly Carbon Market
Report, and reproducibility helpers (snapshot pinning,
SHA-256 cache integrity, session manifest, opt [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between cer versions 0.1.0 dated 2026-04-28 and 0.2.0 dated 2026-11-01
DESCRIPTION | 16 MD5 | 130 ++-- NEWS.md | 92 +++ R/accu.R | 2 R/accu_integrity.R | 61 +- R/http.R | 8 R/interop.R | 2 R/reconcile.R | 21 R/safeguard.R | 39 + R/safeguard_reform.R | 166 +++-- R/utils.R | 69 ++ inst/doc/methodology.R | 4 inst/doc/methodology.Rmd | 36 - inst/doc/methodology.html | 68 +- inst/doc/offsets-integrity-primer.R | 4 inst/doc/offsets-integrity-primer.Rmd | 4 inst/doc/offsets-integrity-primer.html | 6 inst/doc/ret-compliance-primer.R | 9 inst/doc/ret-compliance-primer.Rmd | 14 inst/doc/ret-compliance-primer.html | 20 inst/doc/safeguard-reform.R | 10 inst/doc/safeguard-reform.Rmd | 22 inst/doc/safeguard-reform.html | 21 inst/extdata/accu_method_integrity.csv | 40 - inst/extdata/qcmr_headline_totals.csv | 739 +++++++++++++++++++++++++- inst/extdata/safeguard_industry_baselines.csv | 103 ++- inst/extdata/safeguard_teba_facilities.csv | 39 - man/cer-package.Rd | 5 man/cer_accu_aggregate.Rd | 32 - man/cer_accu_contracts.Rd | 16 man/cer_accu_issuances.Rd | 18 man/cer_accu_methods.Rd | 16 man/cer_accu_projects.Rd | 16 man/cer_accu_relinquishments.Rd | 16 man/cer_cache_info.Rd | 4 man/cer_cite.Rd | 16 man/cer_clear_cache.Rd | 4 man/cer_deposit_zenodo.Rd | 16 man/cer_international_comparator.Rd | 4 man/cer_legislative_instrument.Rd | 16 man/cer_manifest.Rd | 16 man/cer_manifest_clear.Rd | 16 man/cer_manifest_write.Rd | 16 man/cer_method_determination.Rd | 16 man/cer_method_integrity.Rd | 24 man/cer_nger_climate_active.Rd | 8 man/cer_nger_corporate.Rd | 8 man/cer_nger_electricity.Rd | 8 man/cer_nger_scope.Rd | 8 man/cer_qcmr_reference.Rd | 16 man/cer_reconcile.Rd | 10 man/cer_safeguard_baseline_trajectory.Rd | 55 + man/cer_safeguard_facilities.Rd | 8 man/cer_safeguard_industry_baselines.Rd | 23 man/cer_safeguard_teba_facilities.Rd | 31 - man/cer_sha256.Rd | 16 man/cer_snapshot.Rd | 16 man/cer_to_carbondata.Rd | 4 tests/testthat/fixtures |only tests/testthat/test-accu-integrity.R | 46 + tests/testthat/test-parsing-robustness.R |only tests/testthat/test-reconcile.R | 13 tests/testthat/test-safeguard-reform.R | 54 + vignettes/methodology.Rmd | 36 - vignettes/offsets-integrity-primer.Rmd | 4 vignettes/ret-compliance-primer.Rmd | 14 vignettes/safeguard-reform.Rmd | 22 67 files changed, 1803 insertions(+), 609 deletions(-)
Title: (Bifactor) ESEM with Continuous (MLR) or Ordinal (WLSMV) Data
Description: Fits bifactor exploratory structural equation models (B-ESEM),
together with standard exploratory structural equation modeling (ESEM)
and confirmatory factor analysis (CFA), for continuous and
ordinal data. Continuous models use 'lavaan' native efa()
blocks with robust maximum likelihood (MLR) estimation.
Ordinal ESEM defaults to the 'lavaan' weighted least squares
mean- and variance-adjusted (WLSMV) estimator; ordinal B-ESEM uses a
custom diagonally weighted least squares (DWLS) path with polychoric
correlations from 'lavaan', rotation-delta standard errors via 'numDeriv',
and a mean- and variance-adjusted chi-square. Target, geomin, and oblimin
rotations use 'GPArotation'; the bifactor ESEM approach follows Morin,
Arens and Marsh (2016) <doi:10.1080/10705511.2014.961800>. Additional
features include multi-group measurement invariance (configural through
strict, with partial invariance), ESEM-within-CFA conversion, McDonald's
omega reliability suite, and the Mehrvarz and Rouder [...truncated...]
Author: Leon T. De Beer [aut, cre]
Maintainer: Leon T. De Beer <leondb@gmail.com>
Diff between bifactory versions 0.6.1 dated 2026-10-27 and 0.6.2 dated 2026-11-01
DESCRIPTION | 6 - MD5 | 32 +++++---- NEWS.md | 51 +++++++++++++++ R/bifactor.R | 7 +- R/esem.R | 6 + R/invariance.R | 82 ++++++++++++++++++++---- R/ordered_esem.R | 63 ++++++++----------- R/utils.R | 102 +++++++++++++++++++++++++++++++ inst/VALIDATION.md | 23 ++++++ man/besem.Rd | 5 + man/besem_ordered.Rd | 4 - man/esem.Rd | 4 - man/esem_invariance.Rd | 33 ++++++++++ man/esem_ordered.Rd | 9 ++ tests/testthat/test-dwls_communalities.R |only tests/testthat/test-fit_retry.R | 34 ++++++++++ tests/testthat/test-mg_rotation.R |only tests/testthat/test-parallel_starts.R | 15 ++-- 18 files changed, 389 insertions(+), 87 deletions(-)
Title: Statistical Inference for Weighted Data
Description: Analyzes and models data subject to sampling biases.
Provides functions to estimate the density and cumulative distribution
functions from biased samples of continuous distributions. Includes
the estimators proposed by Bhattacharyya et al. (1988)
<doi:10.1080/03610928808829825> and Jones (1991) <doi:10.2307/2337020>
for density, and by Cox (2005, ISBN:052184939X) and Bose and Dutta
(2022) <doi:10.1007/s00184-021-00824-3> for distribution, with
different bandwidth selectors. Also includes a real length-biased
dataset on shrub width from Muttlak (1988)
<https://www.proquest.com/openview/3dd74592e623cdbcfa6176e85bd3d390/1?cbl=18750&diss=y&pq-origsite=gscholar>.
Author: Sanchez Martinez Noelia [cre, aut] ,
Borrajo Garcia Maria Isabel [aut] ,
Conde Amboage Mercedes [aut]
Maintainer: Sanchez Martinez Noelia <noeliaschzmrt@gmail.com>
Diff between WData versions 0.1.1 dated 2025-12-21 and 0.1.2 dated 2026-11-01
DESCRIPTION | 15 +++--- MD5 | 38 ++++++++--------- NAMESPACE | 1 R/rbiased.R | 43 ++----------------- R/utils.R | 111 ++++++++++++++++++++++++++++++++++++++++++++++++++ build/partial.rdb |binary man/WData-package.Rd | 3 - man/bw.F.BD.Rd | 2 man/bw.F.SBC.cv.Rd | 2 man/bw.F.SBC.pi.Rd | 2 man/bw.F.SBC.rt.Rd | 2 man/bw.f.BGM.boot1.Rd | 4 - man/bw.f.BGM.boot2.Rd | 4 - man/bw.f.BGM.cv.Rd | 2 man/bw.f.BGM.rt.Rd | 2 man/cdf.bd.Rd | 4 - man/cdf.cox.Rd | 2 man/df.bhatta.Rd | 2 man/df.jones.Rd | 6 +- man/rbiased.Rd | 40 +++++++++--------- 20 files changed, 181 insertions(+), 104 deletions(-)
Title: Synthetic Data Generation with Copulas, Evaluation and
Multi-Format I/O
Description: Generates synthetic versions of numeric, categorical, mixed-type
and time-series data. Marginal distributions are modelled with
interpolated empirical quantile functions and dependence with Gaussian or
Student-t copulas (Sklar, 1959). Discrete and categorical variables enter
the copula through the distributional transform (Ruschendorf, 2009,
<doi:10.1016/j.jspi.2009.05.030>), and their latent correlations are
estimated by maximum likelihood as polychoric (Olsson, 1979,
<doi:10.1007/BF02296207>) and polyserial (Olsson, Drasgow and Dorans,
1982, <doi:10.1007/BF02294164>) correlations. Unordered categories are
placed on their latent coordinate in an order estimated from their
association with the other variables. Missing values are
modelled by missingness indicators inside the copula, so that
missingness may depend on other variables. Supports stratified models,
a closeness parameter with calibration to a target distance or
disclosure-risk level, chunked generation of ve [...truncated...]
Author: Bogdan Oancea [aut, cre, cph]
Maintainer: Bogdan Oancea <bogdan.oancea@gmail.com>
Diff between SynthesizerPlus versions 0.2.9 dated 2026-10-16 and 0.4.0 dated 2026-11-01
DESCRIPTION | 24 - MD5 | 79 ++-- NEWS.md | 199 +++++++++++ R/SynthesizerPlus-package.R | 4 R/copula.R | 45 +- R/io.R | 16 R/marginals.R | 93 +++++ R/nominal.R |only R/nonlinear.R |only R/synthesizer.R | 451 ++++++++++++++++++++++++++- README.md | 55 +++ build/vignette.rds |binary inst/doc/getting-started.R | 14 inst/doc/getting-started.Rmd | 44 ++ inst/doc/getting-started.html | 185 +++++++---- inst/doc/hybrid-nonlinear.R |only inst/doc/hybrid-nonlinear.Rmd |only inst/doc/hybrid-nonlinear.html |only inst/doc/multivariate-distributions.html | 14 inst/doc/nominal-synthesis.R |only inst/doc/nominal-synthesis.Rmd |only inst/doc/nominal-synthesis.html |only inst/doc/privacy.html | 44 +- inst/examples/hybrid_nonlinear_benchmark.R |only man/SynthesizerPlus-package.Rd | 6 man/fit_synthesizer.Rd | 216 ++++++++++++ man/generate.Rd | 9 tests/testthat/helper.R | 8 tests/testthat/test-augment.R | 2 tests/testthat/test-closeness.R | 4 tests/testthat/test-conditional-fixes.R |only tests/testthat/test-consistency.R | 6 tests/testthat/test-edge-cases.R | 2 tests/testthat/test-hybrid-ablation.R |only tests/testthat/test-hybrid-auto-robustness.R |only tests/testthat/test-hybrid-auto.R |only tests/testthat/test-hybrid-gam.R |only tests/testthat/test-hybrid-nonlinear.R |only tests/testthat/test-io.R | 7 tests/testthat/test-metrics.R | 2 tests/testthat/test-mvdist.R | 2 tests/testthat/test-nominal-conditional.R |only tests/testthat/test-nominal-factor-order.R |only tests/testthat/test-regressions.R | 14 tests/testthat/test-synthesizer.R | 8 tests/testthat/test-timeseries.R | 2 tests/testthat/test-validation.R | 33 + vignettes/getting-started.Rmd | 44 ++ vignettes/hybrid-nonlinear.Rmd |only vignettes/nominal-synthesis.Rmd |only 50 files changed, 1441 insertions(+), 191 deletions(-)
More information about SynthesizerPlus at CRAN
Permanent link
Title: Reparameterized Regression Models
Description: Provides estimation and data generation tools for several new regression models,
including the gamma, beta, inverse gamma, beta prime, log-normal and log-logistic
distributions. These models can be parameterized based on the mean, median, mode,
geometric mean and harmonic mean, except for the log-logistic model which is based
on alternative parametrizations.
For details, see Bourguignon and Gallardo (2025a) <doi:10.1016/j.chemolab.2025.105382> and
Bourguignon and Gallardo (2025b) <doi:10.1111/stan.70007>.
The package also implements higher-order likelihood inference through Skovgaard-adjusted
likelihood ratio statistics and predictive shrinkage estimators reparameterized
beta regression models.
Author: Diego Gallardo [aut, cre],
Marcelo Bourguignon [aut],
Marcia Brandao [aut],
Tiago Magalhaes [ctb],
Rafael Izbicki [ctb],
Yolanda Gomez [ctb]
Maintainer: Diego Gallardo <dgallardo@ubiobio.cl>
Diff between rregm versions 1.4 dated 2026-09-04 and 1.5 dated 2026-11-01
DESCRIPTION | 12 +++++++----- MD5 | 22 +++++++++++----------- NEWS.md | 6 +++++- R/LL.R | 2 +- R/LL5.R | 29 ++++++----------------------- R/dLL5.R | 31 ++++++++----------------------- R/fit.RLL.cens.R | 5 ++++- R/pLL5.R | 26 ++++++++------------------ R/qLL5.R | 30 ++++++++---------------------- R/qRLL.R | 22 +++++++++------------- R/summary.rregm.R | 2 +- man/RLL.Rd | 2 +- 12 files changed, 69 insertions(+), 120 deletions(-)
Title: Quantile Peer Effect Models
Description: Simulating and estimating peer effect models including the quantile-based specification (Houndetoungan, 2025 <doi:10.48550/arXiv.2506.12920>), and the models with Constant Elasticity of Substitution (CES)-based social norm (Boucher et al., 2024 <doi:10.3982/ECTA21048>).
Author: Aristide Houndetoungan [cre, aut] ,
Eyo I. Herstad [aut],
Myungkou Shin [aut]
Maintainer: Aristide Houndetoungan <ahoundetoungan@ecn.ulaval.ca>
Diff between QuantilePeer versions 0.0.1 dated 2025-06-19 and 1.0.1 dated 2026-11-01
DESCRIPTION | 30 MD5 | 79 - NAMESPACE | 14 NEWS.md | 12 R/RcppExports.R | 126 +- R/auxfunc.R | 211 +-- R/demean.R | 72 - R/estimator.R | 69 - R/instruments.R | 233 +++ R/peer.ces.R | 298 ++-- R/peer.gen.R | 163 +- R/peer.lin.R | 256 ++-- R/peer.q.R | 600 +++++---- R/qpeer.cfit.R |only README.md | 32 build/partial.rdb |binary build/vignette.rds |binary inst/doc/introduction_to_QuantilePeer.R | 108 - inst/doc/introduction_to_QuantilePeer.Rmd | 130 +- inst/doc/introduction_to_QuantilePeer.pdf |binary man/QuantilePeer-package.Rd | 8 man/cespeer.Rd | 50 man/cespeer.data.Rd | 4 man/cespeer.sim.Rd | 26 man/demean.Rd | 4 man/linpeer.sim.Rd | 25 man/qpeer.Rd | 106 - man/qpeer.cfit.Rd |only man/qpeer.instruments.Rd | 43 man/qpeer.optimal.instruments.Rd |only man/qpeer.sim.Rd | 44 man/qpeer.test.Rd | 40 man/summary.qpeer.Rd | 15 src/CES.cpp | 188 +-- src/Equilibrium.cpp | 1791 ++++++++++++++++++++++++----- src/Jive.cpp | 124 +- src/Makevars | 3 src/RcppExports.cpp | 668 ++++++---- src/auxfunc.cpp | 312 ----- src/gmm.cpp | 926 ++++++++------ src/gmm.test.cpp | 1074 +++++++++-------- vignettes/introduction_to_QuantilePeer.Rmd | 130 +- 42 files changed, 4915 insertions(+), 3099 deletions(-)
Title: Goodness-of-Fit and Calibration Tests for Logistic Regression
Description: Provides a unified battery of goodness-of-fit and calibration
tests for binary logistic regression, runnable in a single call via
'run.all.gof()'. Around twenty-five tests spanning five decades of
literature are aggregated and grouped by the departure each is built to
detect: global and standardized statistics, partition tests such as
Hosmer-Lemeshow, directed and covariate-space tests, smoothing and
resampling tests, and calibration tests. Each is obtained from its own
package where installed and attributed to its authors. The package also
implements the author's own procedures for sparse data, where the
Hosmer-Lemeshow test loses power: the omnibus Ebrahim-Farrington test
'ef.gof()', the directed 'edge.gof()' and its covariate-space variant
'cdef.gof()', the Cauchy-combination ensemble 'edges.gof()', 'DeepGOF-1'
(a pretrained convolutional statistic whose level comes from the analyst's
own parametric bootstrap rather than from the network), and 'legoft()'
(a frozen-weight combination [...truncated...]
Author: Ebrahim Khaled Ebrahim [aut, cre] ,
Jiawei Zhang [ctb, cph] ,
Jie Ding [ctb, cph] ,
Yuhong Yang [ctb, cph]
Maintainer: Ebrahim Khaled Ebrahim <ebrahimkhaled@alexu.edu.eg>
Diff between ebrahim.gof versions 2.10.0 dated 2026-10-11 and 3.0.0 dated 2026-11-01
DESCRIPTION | 10 MD5 | 50 +- NAMESPACE | 4 NEWS.md | 37 + R/cavity_gof.R |only R/deepgof.R | 161 +++++++ R/legoft.R | 574 +++++++++++++++------------- inst/doc/ebrahim-farrington-intro.html | 4 man/cavity.gof.Rd |only man/deepgof1.Rd | 10 man/legoft.Rd | 39 + man/pairscore.gof.Rd |only tests/testthat/test-bagoft-fast.R | 185 ++++----- tests/testthat/test-cavity-gof.R |only tests/testthat/test-deepgof1.R | 626 +++++++++++++++---------------- tests/testthat/test-def-ensemble-gof.R | 100 ++-- tests/testthat/test-def-external.R | 264 ++++++------- tests/testthat/test-def-gof.R | 6 tests/testthat/test-ebrahim-farrington.R | 2 tests/testthat/test-edge-belt.R | 6 tests/testthat/test-edge-plot.R | 4 tests/testthat/test-ef-method.R | 2 tests/testthat/test-ef-paper.R | 4 tests/testthat/test-gof_certificate.R | 2 tests/testthat/test-legoft-panels.R |only tests/testthat/test-localize.R | 516 ++++++++++++------------- tests/testthat/test-pairscore.R |only tests/testthat/test-parallel.R | 106 ++--- tests/testthat/test-proj-gof.R | 200 ++++----- 29 files changed, 1612 insertions(+), 1300 deletions(-)
Title: NanoString Quality Control Dashboard
Description: NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
<doi:10.1038/nbt1385>). Each barcode is assigned a
messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
target can be counted. As a result each count of a specific barcode
represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString
quality Control dasHbOard) is able to analyse the exported NanoString
nCounter data and facilitates the user in performing a quality
control. 'NACHO' does this by visualising quality control metrics,
expression of control genes, principal components and sample specific
size factors in an interactive web application.
Author: Mickael Canouil [aut, cre] ,
Roderick Slieker [aut] ,
Gerard Bouland [aut]
Maintainer: Mickael Canouil <pro@mickael.canouil.dev>
Diff between NACHO versions 2.0.8 dated 2026-10-01 and 3.0.0 dated 2026-11-01
NACHO-2.0.8/NACHO/R/check_outliers.R |only NACHO-2.0.8/NACHO/R/factor_calculation.R |only NACHO-2.0.8/NACHO/R/find_housekeeping.R |only NACHO-2.0.8/NACHO/R/format_counts.R |only NACHO-2.0.8/NACHO/R/format_tag_content.R |only NACHO-2.0.8/NACHO/R/geometric_housekeeping.R |only NACHO-2.0.8/NACHO/R/geometric_mean.R |only NACHO-2.0.8/NACHO/R/geometric_probes.R |only NACHO-2.0.8/NACHO/R/norm_geo.R |only NACHO-2.0.8/NACHO/R/norm_glm.R |only NACHO-2.0.8/NACHO/R/normalise_counts.R |only NACHO-2.0.8/NACHO/R/print.R |only NACHO-2.0.8/NACHO/R/probe_exclusion.R |only NACHO-2.0.8/NACHO/R/qc_features.R |only NACHO-2.0.8/NACHO/R/qc_imaging.R |only NACHO-2.0.8/NACHO/R/qc_limit_detection.R |only NACHO-2.0.8/NACHO/R/qc_pca.R |only NACHO-2.0.8/NACHO/R/qc_positive_control.R |only NACHO-2.0.8/NACHO/R/qc_rcc.R |only NACHO-2.0.8/NACHO/R/read_tags.R |only NACHO-2.0.8/NACHO/inst/WORDLIST |only NACHO-2.0.8/NACHO/inst/app/utils.R |only NACHO-2.0.8/NACHO/inst/app/www |only NACHO-2.0.8/NACHO/inst/doc/NACHO-analysis.R |only NACHO-2.0.8/NACHO/inst/doc/NACHO-analysis.Rmd |only NACHO-2.0.8/NACHO/inst/doc/NACHO-analysis.html |only NACHO-2.0.8/NACHO/man/check_outliers.Rd |only NACHO-2.0.8/NACHO/man/figures/README-app.png |only NACHO-2.0.8/NACHO/man/figures/README-visualise.png |only NACHO-2.0.8/NACHO/man/figures/app_screenshot.R |only NACHO-2.0.8/NACHO/man/print.nacho.Rd |only NACHO-2.0.8/NACHO/tests/testthat/test-check_outliers.R |only NACHO-2.0.8/NACHO/tests/testthat/test-geometric_housekeeping.R |only NACHO-2.0.8/NACHO/tests/testthat/test-print.R |only NACHO-2.0.8/NACHO/vignettes/NACHO-analysis.Rmd |only NACHO-2.0.8/NACHO/vignettes/README-visualise.png |only NACHO-3.0.0/NACHO/DESCRIPTION | 41 NACHO-3.0.0/NACHO/MD5 | 301 + NACHO-3.0.0/NACHO/NAMESPACE | 36 NACHO-3.0.0/NACHO/NEWS.md | 232 + NACHO-3.0.0/NACHO/R/GSE74821.R | 2 NACHO-3.0.0/NACHO/R/NACHO-package.R | 10 NACHO-3.0.0/NACHO/R/accessors.R |only NACHO-3.0.0/NACHO/R/app.R |only NACHO-3.0.0/NACHO/R/autoplot.R | 1948 +++++----- NACHO-3.0.0/NACHO/R/batch.R |only NACHO-3.0.0/NACHO/R/brand.R |only NACHO-3.0.0/NACHO/R/conditions.R |only NACHO-3.0.0/NACHO/R/daemon.R |only NACHO-3.0.0/NACHO/R/deploy.R | 21 NACHO-3.0.0/NACHO/R/detection.R |only NACHO-3.0.0/NACHO/R/interop.R |only NACHO-3.0.0/NACHO/R/load_rcc.R | 620 ++- NACHO-3.0.0/NACHO/R/methods.R |only NACHO-3.0.0/NACHO/R/mirna.R |only NACHO-3.0.0/NACHO/R/mod_batch.R |only NACHO-3.0.0/NACHO/R/mod_data.R |only NACHO-3.0.0/NACHO/R/mod_export.R |only NACHO-3.0.0/NACHO/R/mod_outliers.R |only NACHO-3.0.0/NACHO/R/mod_overview.R |only NACHO-3.0.0/NACHO/R/mod_qc_plot.R |only NACHO-3.0.0/NACHO/R/mod_thresholds.R |only NACHO-3.0.0/NACHO/R/nacho-class.R |only NACHO-3.0.0/NACHO/R/normalise.R | 410 -- NACHO-3.0.0/NACHO/R/plot_worker.R |only NACHO-3.0.0/NACHO/R/qc-table.R |only NACHO-3.0.0/NACHO/R/qc.R |only NACHO-3.0.0/NACHO/R/read_nacho.R |only NACHO-3.0.0/NACHO/R/read_rcc.R | 275 - NACHO-3.0.0/NACHO/R/render.R | 376 + NACHO-3.0.0/NACHO/R/report.R |only NACHO-3.0.0/NACHO/R/ruv.R |only NACHO-3.0.0/NACHO/R/stability.R |only NACHO-3.0.0/NACHO/R/thresholds.R |only NACHO-3.0.0/NACHO/R/tour.R |only NACHO-3.0.0/NACHO/R/utils.R | 26 NACHO-3.0.0/NACHO/R/visualise.R | 84 NACHO-3.0.0/NACHO/R/zzz.R |only NACHO-3.0.0/NACHO/README.md | 169 NACHO-3.0.0/NACHO/build/partial.rdb |binary NACHO-3.0.0/NACHO/build/vignette.rds |binary NACHO-3.0.0/NACHO/data/GSE74821.rda |binary NACHO-3.0.0/NACHO/inst/CITATION | 1 NACHO-3.0.0/NACHO/inst/COPYRIGHTS |only NACHO-3.0.0/NACHO/inst/about |only NACHO-3.0.0/NACHO/inst/app/app.R | 667 --- NACHO-3.0.0/NACHO/inst/brand |only NACHO-3.0.0/NACHO/inst/doc/NACHO.R | 196 - NACHO-3.0.0/NACHO/inst/doc/NACHO.Rmd | 462 +- NACHO-3.0.0/NACHO/inst/doc/NACHO.html | 1247 ++---- NACHO-3.0.0/NACHO/inst/extdata |only NACHO-3.0.0/NACHO/inst/report |only NACHO-3.0.0/NACHO/inst/tour |only NACHO-3.0.0/NACHO/man/GSE74821.Rd | 2 NACHO-3.0.0/NACHO/man/as_summarized_experiment.Rd |only NACHO-3.0.0/NACHO/man/autoplot.nacho.Rd | 124 NACHO-3.0.0/NACHO/man/batch_diagnostics.Rd |only NACHO-3.0.0/NACHO/man/deploy.Rd | 15 NACHO-3.0.0/NACHO/man/exclude_outliers.Rd |only NACHO-3.0.0/NACHO/man/figures/README-quick-start-plot-1.png |only NACHO-3.0.0/NACHO/man/filter_detected.Rd |only NACHO-3.0.0/NACHO/man/housekeeping_stability.Rd |only NACHO-3.0.0/NACHO/man/load_rcc.Rd | 88 NACHO-3.0.0/NACHO/man/nacho-accessors.Rd |only NACHO-3.0.0/NACHO/man/nacho-methods.Rd |only NACHO-3.0.0/NACHO/man/nacho_app.Rd |only NACHO-3.0.0/NACHO/man/nacho_thresholds.Rd |only NACHO-3.0.0/NACHO/man/normalise.Rd | 189 NACHO-3.0.0/NACHO/man/read_nacho.Rd |only NACHO-3.0.0/NACHO/man/render.Rd | 88 NACHO-3.0.0/NACHO/man/suggest_ruv_k.Rd |only NACHO-3.0.0/NACHO/man/upgrade_nacho.Rd |only NACHO-3.0.0/NACHO/man/visualise.Rd | 37 NACHO-3.0.0/NACHO/man/write_thresholds.Rd |only NACHO-3.0.0/NACHO/tests/testthat/_snaps |only NACHO-3.0.0/NACHO/tests/testthat/fixtures |only NACHO-3.0.0/NACHO/tests/testthat/helper-browser.R |only NACHO-3.0.0/NACHO/tests/testthat/helper-fixtures.R | 3 NACHO-3.0.0/NACHO/tests/testthat/helper-geo-fixtures.R |only NACHO-3.0.0/NACHO/tests/testthat/helper-nacho.R |only NACHO-3.0.0/NACHO/tests/testthat/helper-values.R | 15 NACHO-3.0.0/NACHO/tests/testthat/setup.R |only NACHO-3.0.0/NACHO/tests/testthat/test-accessors.R |only NACHO-3.0.0/NACHO/tests/testthat/test-app-accessibility.R |only NACHO-3.0.0/NACHO/tests/testthat/test-app-smoke.R |only NACHO-3.0.0/NACHO/tests/testthat/test-app.R | 676 ++- NACHO-3.0.0/NACHO/tests/testthat/test-autoplot-snapshots.R |only NACHO-3.0.0/NACHO/tests/testthat/test-autoplot.R | 858 ++++ NACHO-3.0.0/NACHO/tests/testthat/test-background.R |only NACHO-3.0.0/NACHO/tests/testthat/test-batch.R |only NACHO-3.0.0/NACHO/tests/testthat/test-brand.R |only NACHO-3.0.0/NACHO/tests/testthat/test-conditions.R |only NACHO-3.0.0/NACHO/tests/testthat/test-daemon.R |only NACHO-3.0.0/NACHO/tests/testthat/test-deploy.R | 18 NACHO-3.0.0/NACHO/tests/testthat/test-detection.R |only NACHO-3.0.0/NACHO/tests/testthat/test-geo-fixtures.R |only NACHO-3.0.0/NACHO/tests/testthat/test-glm.R |only NACHO-3.0.0/NACHO/tests/testthat/test-gse74821.R |only NACHO-3.0.0/NACHO/tests/testthat/test-interop.R |only NACHO-3.0.0/NACHO/tests/testthat/test-load_rcc.R | 758 ++- NACHO-3.0.0/NACHO/tests/testthat/test-methods.R |only NACHO-3.0.0/NACHO/tests/testthat/test-mirna.R |only NACHO-3.0.0/NACHO/tests/testthat/test-mod_batch.R |only NACHO-3.0.0/NACHO/tests/testthat/test-mod_data.R |only NACHO-3.0.0/NACHO/tests/testthat/test-mod_export.R |only NACHO-3.0.0/NACHO/tests/testthat/test-mod_outliers.R |only NACHO-3.0.0/NACHO/tests/testthat/test-mod_overview.R |only NACHO-3.0.0/NACHO/tests/testthat/test-mod_qc_plot.R |only NACHO-3.0.0/NACHO/tests/testthat/test-mod_thresholds.R |only NACHO-3.0.0/NACHO/tests/testthat/test-nacho-class.R |only NACHO-3.0.0/NACHO/tests/testthat/test-normalise.R | 747 ++- NACHO-3.0.0/NACHO/tests/testthat/test-parity.R |only NACHO-3.0.0/NACHO/tests/testthat/test-plot_worker.R |only NACHO-3.0.0/NACHO/tests/testthat/test-qc-table.R |only NACHO-3.0.0/NACHO/tests/testthat/test-qc.R |only NACHO-3.0.0/NACHO/tests/testthat/test-read_nacho.R |only NACHO-3.0.0/NACHO/tests/testthat/test-read_rcc.R |only NACHO-3.0.0/NACHO/tests/testthat/test-render.R | 765 +++ NACHO-3.0.0/NACHO/tests/testthat/test-report.R |only NACHO-3.0.0/NACHO/tests/testthat/test-ruv.R |only NACHO-3.0.0/NACHO/tests/testthat/test-stability.R |only NACHO-3.0.0/NACHO/tests/testthat/test-thresholds.R |only NACHO-3.0.0/NACHO/tests/testthat/test-tour.R |only NACHO-3.0.0/NACHO/tests/testthat/test-utils.R | 2 NACHO-3.0.0/NACHO/tests/testthat/test-values.R | 57 NACHO-3.0.0/NACHO/tests/testthat/test-visualise.R | 65 NACHO-3.0.0/NACHO/vignettes/NACHO.Rmd | 462 +- NACHO-3.0.0/NACHO/vignettes/README-app.png |binary 168 files changed, 7160 insertions(+), 4933 deletions(-)
Title: Simulating and Analyzing Time to Event Data in the Presence of
Population Mortality
Description: Implements two methods: a nonparametric risk adjustment and a
data imputation method that use general population mortality tables to allow a
correct analysis of time to disease recurrence. Also includes a powerful set of
object oriented survival data simulation functions.
Author: Tomaz Stupnik [aut, cre],
Maja Pohar Perme [ctb]
Maintainer: Tomaz Stupnik <tomaz.stupnik@guest.arnes.si>
Diff between missDeaths versions 2.8 dated 2024-09-23 and 2.9 dated 2026-11-01
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NAMESPACE | 2 +- NEWS |only R/package.R | 3 ++- 5 files changed, 11 insertions(+), 9 deletions(-)
Title: Determine Thermal Vegetation Periods
Description: Collection of common methods to determine growing season length in
a simple manner. Start and end dates of the vegetation periods are calculated
solely based on daily mean temperatures and the day of the year.
Author: Robert Nuske [aut, cre] ,
Nordwestdeutsche Forstliche Versuchsanstalt [cph, fnd]
Maintainer: Robert Nuske <robert.nuske@mailbox.org>
Diff between vegperiod versions 0.4.0 dated 2022-11-01 and 0.4.1 dated 2026-11-01
DESCRIPTION | 11 ++++++----- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/veg_starts.R | 7 ++++++- R/vegperiod.R | 9 +++++++-- README.md | 9 ++++++++- build/partial.rdb |binary inst/CITATION | 20 +++++++++++++------- man/vegperiod.Rd | 5 +++-- 9 files changed, 55 insertions(+), 26 deletions(-)
Title: Reconstruct and Visualize Transit Vehicle Trajectories
Description: Today's public transit vehicles produce a large amount of automatic
vehicle location (AVL) data. This data is very useful for planning and
performance studies, but can be noisy, error-prone, and sparse. This package
provides tools for cleaning AVL point data and turning it into continuous,
differentiable, monotonic, and invertible vehicle trajectory functions,
based on the work of Robbennolt et al. (2025)
<doi:10.48550/arXiv.2509.00119> and
Huang et al. (2023) <doi:10.1109/ITSC57777.2023.10422524>.
Author: Benjamin O'Brien [aut, cre, cph],
Lewis Lehe [aut]
Maintainer: Benjamin O'Brien <obrienbenjaminj@gmail.com>
Diff between transittraj versions 1.1.0 dated 2026-09-02 and 1.1.1 dated 2026-11-01
DESCRIPTION | 14 +-- MD5 | 17 ++-- NEWS.md | 9 ++ R/avl_cleaning.R | 139 +++++++++---------------------------- R/utils.R | 45 ++++++++++- README.md | 14 +-- inst/doc/intro-trajectories.html | 2 man/correct_dists_fun.Rd |only tests/testthat/test-avl_cleaning.R | 119 +++++++++++++------------------ tests/testthat/test-utils.R | 47 ++++++++++-- 10 files changed, 199 insertions(+), 207 deletions(-)
Title: Bayesian Graphical Models using MCMC
Description: Interface to the JAGS MCMC library.
Author: Martyn Plummer [aut, cre],
Alexey Stukalov [ctb],
Matt Denwood [aut]
Maintainer: Martyn Plummer <martyn.plummer@gmail.com>
Diff between rjags versions 4-17 dated 2025-03-24 and 4-18 dated 2026-11-01
DESCRIPTION | 14 INSTALL | 127 -- MD5 | 34 NAMESPACE | 8 R/flags.R |only R/jags.R | 22 R/unix/zzz.R.in | 48 R/utilities.R | 8 R/windows/zzz.R | 55 configure | 2941 ++++++++--------------------------------------- configure.ac | 201 +-- man/jags.module.Rd | 19 man/pkg.compile.flags.Rd |only src/Makevars.in | 7 src/Makevars.ucrt | 13 src/Makevars.win | 12 src/flags.c |only src/init.c | 4 src/init.h | 4 tests |only 20 files changed, 837 insertions(+), 2680 deletions(-)
Title: Categorize Injury Diagnosis Codes
Description: Functions read a dataframe containing one or more International Classification of Diseases Tenth Revision codes per subject.
They return original data with injury categorizations and severity scores added.
Author: David Clark [aut, cre],
Adam Black [aut]
Maintainer: David Clark <david.clark@tufts.edu>
Diff between icdpicr2 versions 2.1.0 dated 2025-09-08 and 2.1.2 dated 2026-11-01
icdpicr2-2.1.0/icdpicr2/inst/doc/implementation.R |only icdpicr2-2.1.0/icdpicr2/inst/doc/preliminary.R |only icdpicr2-2.1.0/icdpicr2/inst/doc/preliminary.Rmd |only icdpicr2-2.1.0/icdpicr2/inst/doc/preliminary.html |only icdpicr2-2.1.0/icdpicr2/vignettes/preliminary.Rmd |only icdpicr2-2.1.2/icdpicr2/DESCRIPTION | 10 icdpicr2-2.1.2/icdpicr2/MD5 | 34 +- icdpicr2-2.1.2/icdpicr2/R/data.R | 6 icdpicr2-2.1.2/icdpicr2/R/framework.R | 2 icdpicr2-2.1.2/icdpicr2/README.md | 72 ++--- icdpicr2-2.1.2/icdpicr2/build/vignette.rds |binary icdpicr2-2.1.2/icdpicr2/data/i10_map_iciss.rda |binary icdpicr2-2.1.2/icdpicr2/data/testdata.rda |binary icdpicr2-2.1.2/icdpicr2/inst/doc/implementation.Rmd | 86 +++--- icdpicr2-2.1.2/icdpicr2/inst/doc/implementation.html | 251 ++++++------------- icdpicr2-2.1.2/icdpicr2/inst/doc/response.Rmd |only icdpicr2-2.1.2/icdpicr2/inst/doc/response.html |only icdpicr2-2.1.2/icdpicr2/man/i10_map_iciss.Rd | 2 icdpicr2-2.1.2/icdpicr2/man/i10_map_sev.Rd | 2 icdpicr2-2.1.2/icdpicr2/man/testdata.Rd | 2 icdpicr2-2.1.2/icdpicr2/vignettes/implementation.Rmd | 86 +++--- icdpicr2-2.1.2/icdpicr2/vignettes/response.Rmd |only 22 files changed, 223 insertions(+), 330 deletions(-)
Title: Extracts Risk Neutral Densities of Prices, Money Market Rates
and Government Bond Yields from Interest Rates Futures Options
Prices
Description: Provides with parametric Risk Neutral Densities (RNDs) and cumulative densities of futures prices on fixed-income products, relying on options on Short Term Interest Rate futures or options on government bond futures. It models the futures price at options' maturity as a mixture of lognormal densities. Leveraging on this, the package provides with the RNDs and cumulative densities of the money market rate or the government bond yield inferred from the futures price, using the RND of the futures price. The package also extracts from options prices on bond futures in one go the RND of the cheapest-to-deliver (ctd) bond repo rate from options' to futures' maturity and the RND of the ctd bond yield at options' maturity. The package also provides with the probability attached to each bond in the delivery basket of a government bond futures to be the cheapest at options' maturity from an examination of either the implied repo rate or the net basis of bonds in the delivery basket, as well as [...truncated...]
Author: William Arrata [aut, cre]
Maintainer: William Arrata <william.arrata@gmail.com>
Diff between yrnd versions 0.1.7 dated 2026-09-30 and 0.1.8 dated 2026-11-01
DESCRIPTION | 8 MD5 | 48 - NAMESPACE | 1 R/bond_fut_irr_ytm.R | 1059 +++++++++++++++++++++--------------------- R/bond_future_charac_bbg.R | 9 R/bond_future_price.R | 1 R/bond_yield_spread.R | 2 R/ctd_bond_yield.R | 1 R/deliv_bonds_charac_bbg.R | 114 ++-- R/globals.R | 2 R/option_prices_bbg.R | 23 R/proba_ctd.R | 46 - R/proba_ctd_irr.R | 735 ++++++++++++++--------------- R/proba_ctd_opt.R | 315 ++++++++---- R/sc_repo_spread.R |only R/stir_future_charac_bbg.R | 1 inst/doc/yrnd-functions.R | 3 inst/doc/yrnd-functions.Rmd | 10 inst/doc/yrnd-functions.html | 57 +- man/bond_fut_irr_ytm.Rd | 6 man/bond_future_charac_bbg.Rd | 2 man/bond_yield_spread.Rd | 2 man/proba_ctd_irr.Rd | 6 man/proba_ctd_opt.Rd | 14 man/sc_repo_spread.Rd |only vignettes/yrnd-functions.Rmd | 10 26 files changed, 1316 insertions(+), 1159 deletions(-)
Title: BioAcoustic eveNT classifiER
Description: Create a hierarchical acoustic event species classifier out of
multiple call type detectors as described in
Rankin et al (2017) <doi:10.1111/mms.12381>.
Author: Eric Archer [aut, cre],
Shannon Rankin [aut]
Maintainer: Eric Archer <eric.ivan.archer@gmail.com>
Diff between banter versions 0.9.8 dated 2025-06-11 and 0.9.81 dated 2026-11-01
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/summary.R | 3 ++- README.md | 6 +++++- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: An R Interface to the 'ROPTLIB' Library for Riemannian Manifold
Optimization
Description: An R interface to version 0.3 of the 'ROPTLIB' optimization library
(see <https://www.math.fsu.edu/~whuang2/> for more information). Optimize
real-valued functions over manifolds such as Stiefel, Grassmann, and
symmetric positive definite matrices. For details see Martin et al. (2020)
<doi:10.18637/jss.v093.i01>. Note that the optional 'ldr' package used in
some of this package's examples can be obtained from either the article
<doi:10.18637/jss.v061.i03> or from the 'ldr' package
<https://cran.r-project.org/package=ldr>.
Author: Kofi P. Adragni [aut, cph],
Sean R. Martin [aut, cre, cph],
Andrew M. Raim [aut, cph],
Wen Huang [aut, cph]
Maintainer: Sean R. Martin <sean.martin@jhuapl.edu>
Diff between ManifoldOptim versions 1.0.2 dated 2026-07-12 and 1.0.3 dated 2026-11-01
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- src/Manifolds/Euclidean/Euclidean.cpp | 2 +- src/Manifolds/Grassmann/Grassmann.cpp | 2 +- src/Manifolds/L2Sphere/L2Sphere.cpp | 2 +- src/Manifolds/PreShapeCurves/PreShapeCurves.cpp | 2 +- src/Manifolds/SPDManifold.cpp | 2 +- src/Manifolds/Stiefel/Stiefel.cpp | 2 +- 8 files changed, 16 insertions(+), 16 deletions(-)
Title: (Un)Conditional Forecast Dominance
Description: A unified toolkit for out-of-sample forecast dominance testing.
Covers unconditional and conditional equal and superior predictive
ability, encompassing, and nested-model comparison. Implements the
Diebold-Mariano test with the Harvey, Leybourne, and Newbold (1997)
<doi:10.1016/S0169-2070(96)00719-4> small-sample correction; the
Clark-West mean squared forecast error (MSFE) adjusted statistic
(Clark and West, 2007)
<doi:10.1016/j.jeconom.2006.05.023>; the ENC-NEW encompassing test of
Clark and McCracken (2001) <doi:10.1016/S0304-4076(01)00071-9>; the
Giacomini-White conditional equal predictive ability test (Giacomini
and White, 2006) <doi:10.1111/j.1468-0262.2006.00718.x>; Hansen's
superior predictive ability (SPA) test (Hansen, 2005)
<doi:10.1198/073500105000000063>; the conditional superior predictive
ability test of Li, Liao, and Quaedvlieg (2022)
<doi:10.1093/restud/rdab039>; and the uniform and average multi-horizon
SPA tests of Quaedvlieg (202 [...truncated...]
Author: Gabriel Cabrera [aut, cre]
Maintainer: Gabriel Cabrera <gabriel.cabrera.guz@gmail.com>
Diff between forecastdom versions 0.1.0 dated 2026-07-24 and 0.1.1 dated 2026-11-01
forecastdom-0.1.0/forecastdom/R/aspa_mh_test.R |only forecastdom-0.1.0/forecastdom/R/cspa_test.R |only forecastdom-0.1.0/forecastdom/R/cspa_test_plot.R |only forecastdom-0.1.0/forecastdom/R/cw_test.R |only forecastdom-0.1.0/forecastdom/R/dm_test.R |only forecastdom-0.1.0/forecastdom/R/do_prewhiten.R |only forecastdom-0.1.0/forecastdom/R/do_sim.R |only forecastdom-0.1.0/forecastdom/R/enc_new.R |only forecastdom-0.1.0/forecastdom/R/get_legendre.R |only forecastdom-0.1.0/forecastdom/R/gw_test.R |only forecastdom-0.1.0/forecastdom/R/ivx_wald.R |only forecastdom-0.1.0/forecastdom/R/llq2022_jnj-data.R |only forecastdom-0.1.0/forecastdom/R/llq2022_uv_cspa-data.R |only forecastdom-0.1.0/forecastdom/R/mh_helpers.R |only forecastdom-0.1.0/forecastdom/R/mse_f_test.R |only forecastdom-0.1.0/forecastdom/R/qll_hat.R |only forecastdom-0.1.0/forecastdom/R/spa_test.R |only forecastdom-0.1.0/forecastdom/R/uspa_mh_test.R |only forecastdom-0.1.1/forecastdom/DESCRIPTION | 13 - forecastdom-0.1.1/forecastdom/MD5 | 102 +++++------ forecastdom-0.1.1/forecastdom/NEWS.md | 18 + forecastdom-0.1.1/forecastdom/R/RcppExports.R | 10 + forecastdom-0.1.1/forecastdom/R/aspa-mh-test.R |only forecastdom-0.1.1/forecastdom/R/covnw.R | 2 forecastdom-0.1.1/forecastdom/R/cspa-test-plot.R |only forecastdom-0.1.1/forecastdom/R/cspa-test.R |only forecastdom-0.1.1/forecastdom/R/cw-test.R |only forecastdom-0.1.1/forecastdom/R/dm-test.R |only forecastdom-0.1.1/forecastdom/R/do-prewhiten.R |only forecastdom-0.1.1/forecastdom/R/do-sim.R |only forecastdom-0.1.1/forecastdom/R/enc-new.R |only forecastdom-0.1.1/forecastdom/R/get-legendre.R |only forecastdom-0.1.1/forecastdom/R/gw-test.R |only forecastdom-0.1.1/forecastdom/R/ivx-wald.R |only forecastdom-0.1.1/forecastdom/R/llq2022-jnj-data.R |only forecastdom-0.1.1/forecastdom/R/llq2022-uv-cspa-data.R |only forecastdom-0.1.1/forecastdom/R/mh-helpers.R |only forecastdom-0.1.1/forecastdom/R/mse-f-test.R |only forecastdom-0.1.1/forecastdom/R/qll-hat.R |only forecastdom-0.1.1/forecastdom/R/spa-test.R |only forecastdom-0.1.1/forecastdom/R/uspa-mh-test.R |only forecastdom-0.1.1/forecastdom/README.md | 9 forecastdom-0.1.1/forecastdom/inst/WORDLIST | 2 forecastdom-0.1.1/forecastdom/inst/doc/forecastdom.html | 6 forecastdom-0.1.1/forecastdom/inst/doc/hl2005-spa-garch.Rmd | 9 forecastdom-0.1.1/forecastdom/inst/doc/hl2005-spa-garch.html | 64 +++--- forecastdom-0.1.1/forecastdom/inst/doc/llq2022-cspa-rv.html | 10 - forecastdom-0.1.1/forecastdom/man/aspa_mh_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/cspa_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/cspa_test_plot.Rd | 2 forecastdom-0.1.1/forecastdom/man/cw_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/dm_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/do_prewhiten.Rd | 2 forecastdom-0.1.1/forecastdom/man/do_sim.Rd | 2 forecastdom-0.1.1/forecastdom/man/enc_new.Rd | 2 forecastdom-0.1.1/forecastdom/man/forecastdom-package.Rd | 4 forecastdom-0.1.1/forecastdom/man/get_legendre.Rd | 2 forecastdom-0.1.1/forecastdom/man/gw_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/ivx_wald.Rd | 2 forecastdom-0.1.1/forecastdom/man/llq2022_jnj.Rd | 2 forecastdom-0.1.1/forecastdom/man/llq2022_uv_cspa.Rd | 2 forecastdom-0.1.1/forecastdom/man/mse_f_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/print.cspa_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/qll_hat.Rd | 2 forecastdom-0.1.1/forecastdom/man/spa_test.Rd | 18 + forecastdom-0.1.1/forecastdom/man/summary.cspa_test.Rd | 2 forecastdom-0.1.1/forecastdom/man/uspa_mh_test.Rd | 2 forecastdom-0.1.1/forecastdom/src/cspa_cpp.cpp | 15 - forecastdom-0.1.1/forecastdom/tests/testthat/test-cspa.R |only forecastdom-0.1.1/forecastdom/tests/testthat/test-spa_test.R |only forecastdom-0.1.1/forecastdom/vignettes/hl2005-spa-garch.Rmd | 9 71 files changed, 186 insertions(+), 141 deletions(-)
Title: Access International Monetary Fund Data via the 'SDMX' 3.0 API
Description: Download macroeconomic and financial statistics from the
International Monetary Fund data portal (<https://data.imf.org>), served
through an 'SDMX' 3.0 REST API. Provides a tidy interface to the Fund's
flagship databases, beginning with the World Economic Outlook, and reads
the compact 'SDMX-CSV' representation of each query for fast,
dependency-light parsing.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between readimf versions 0.1.0 dated 2026-06-15 and 0.1.1 dated 2026-11-01
DESCRIPTION | 8 ++--- MD5 | 50 ++++++++++++++++++------------------- NEWS.md | 17 ++++++++++++ R/databases.R | 26 +++++++++++++------ R/ifs.R | 6 ++-- R/imf_weo.R | 4 ++ R/request.R | 19 ++++++++++++-- R/structure.R | 28 ++++++++++++++------ README.md | 54 +++++++++++++++++++++------------------- inst/CITATION | 2 - man/imf_codelist.Rd | 4 ++ man/imf_cofer.Rd | 6 ++-- man/imf_commodity.Rd | 6 ++-- man/imf_countries.Rd | 4 ++ man/imf_cpi.Rd | 4 ++ man/imf_data.Rd | 4 ++ man/imf_dataflows.Rd | 6 ++-- man/imf_dimensions.Rd | 4 ++ man/imf_dots.Rd | 6 ++-- man/imf_gfs.Rd | 4 ++ man/imf_ifs.Rd | 6 ++-- man/imf_search.Rd | 6 ++-- man/imf_weo.Rd | 4 ++ man/readimf-package.Rd | 5 +++ tests/testthat/test-imf_weo.R | 9 ++++++ tests/testthat/test-internals.R | 8 +++++ 26 files changed, 205 insertions(+), 95 deletions(-)
Title: Download Data from the 'Office for National Statistics'
Description: Provides functions to download and tidy statistical data
published by the 'Office for National Statistics'
<https://www.ons.gov.uk>. Covers GDP, inflation (CPI, CPIH, RPI),
unemployment, employment, wages, trade, retail sales, house prices,
productivity, population, and public sector finances. Most series are
fetched from the 'ONS' website using its CSV time series endpoint.
House price data is sourced from 'HM Land Registry'
<https://www.gov.uk/government/organisations/land-registry>.
Data is cached locally between sessions.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between ons versions 0.1.4 dated 2026-09-09 and 0.1.5 dated 2026-11-01
DESCRIPTION | 8 +- MD5 | 49 ++++++++-------- NEWS.md | 23 +++++++ R/ons_gdp.R | 13 ++-- R/ons_wages.R | 2 R/utils.R | 60 +++++++++++++++++--- README.md | 118 ++++++++++++++++++++-------------------- man/clear_cache.Rd | 6 +- man/ons-package.Rd | 5 + man/ons_cpi.Rd | 10 +-- man/ons_employment.Rd | 8 +- man/ons_gdp.Rd | 19 +++--- man/ons_get.Rd | 6 +- man/ons_house_prices.Rd | 6 +- man/ons_inactivity.Rd | 8 +- man/ons_monthly_gdp.Rd | 10 +-- man/ons_population.Rd | 10 +-- man/ons_productivity.Rd | 10 +-- man/ons_retail_sales.Rd | 6 +- man/ons_search.Rd | 6 +- man/ons_trade.Rd | 6 +- man/ons_unemployment.Rd | 8 +- man/ons_wages.Rd | 8 +- tests/testthat/test-ons_gdp.R | 9 +++ tests/testthat/test-ons_wages.R | 7 ++ tests/testthat/test-utils.R |only 26 files changed, 258 insertions(+), 163 deletions(-)
Title: Inflation Decomposition, Core Measures, and Trend Estimation
Description: Tools for analysing inflation dynamics. Computes weighted
contributions of price index components, core inflation measures
(trimmed mean, weighted median, exclusion-based) following Bryan and
Cecchetti (1994), inflation
persistence via sum-of-AR-coefficients, diffusion indices, Phillips
curve estimation, breakeven inflation, and trend inflation using the
Beveridge-Nelson decomposition and Hodrick-Prescott filter. All
functions are pure computation and work with price data from any
source.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between inflationkit versions 0.1.0 dated 2026-03-26 and 0.1.1 dated 2026-11-01
inflationkit-0.1.0/inflationkit/build |only inflationkit-0.1.1/inflationkit/DESCRIPTION | 13 - inflationkit-0.1.1/inflationkit/MD5 | 16 - inflationkit-0.1.1/inflationkit/NAMESPACE | 106 +++++----- inflationkit-0.1.1/inflationkit/NEWS.md | 11 + inflationkit-0.1.1/inflationkit/R/sample_data.R | 8 inflationkit-0.1.1/inflationkit/R/utils.R | 25 ++ inflationkit-0.1.1/inflationkit/man/inflationkit-package.Rd | 8 inflationkit-0.1.1/inflationkit/tests/testthat/Rplots.pdf |only inflationkit-0.1.1/inflationkit/tests/testthat/test-sample_data.R | 19 + 10 files changed, 136 insertions(+), 70 deletions(-)
Title: Inflation Adjustment for Historical Currency Values
Description: Convert historical monetary values into their present-day equivalents
using bundled CPI (Consumer Price Index) and GDP deflator data sourced from the
World Bank Development Indicators. Supports British pounds (GBP), Australian
dollars (AUD), US dollars (USD), Euro (EUR), Canadian dollars (CAD), Japanese
yen (JPY), Chinese yuan (CNY), Swiss francs (CHF), New Zealand dollars (NZD),
Indian rupees (INR), South Korean won (KRW), Brazilian reais (BRL), and
Norwegian krone (NOK). Currency codes and country names are both accepted as
input.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between inflateR versions 0.2.0 dated 2026-09-09 and 0.2.1 dated 2026-11-01
DESCRIPTION | 8 ++++---- MD5 | 25 +++++++++++++------------ NEWS.md | 21 +++++++++++++++++++++ R/data.R | 15 ++++++++++++--- README.md | 36 ++++++++++++++++++------------------ data/nok_cpi.rda |binary data/usd_cpi.rda |binary man/adjust_inflation.Rd | 4 ++-- man/adjust_real.Rd | 4 ++-- man/historical_real.Rd | 4 ++-- man/historical_value.Rd | 4 ++-- man/inflateR-package.Rd | 5 +++++ man/usd_cpi.Rd | 16 +++++++++++++--- tests/testthat/test-data.R |only 14 files changed, 94 insertions(+), 48 deletions(-)
Title: Inequality Measurement, Decomposition, and Poverty Analysis
Description: Tools for measuring income and wealth inequality. Computes the
Gini coefficient with bootstrap or asymptotic confidence intervals
following Davidson (2009) <doi:10.1016/j.jeconom.2008.11.004>, the
extended S-Gini family, Theil T and L indices (generalised entropy
family), the Atkinson index, the Kolm absolute inequality index, Palma
ratio, Hoover index, percentile ratios, and Lorenz curves. Supports
between-within group decomposition following Bourguignon (1979)
<doi:10.2307/1914138>, income share tabulation, concentration indices
for health inequality with Erreygers (2009) correction, Kakwani tax
progressivity and Reynolds-Smolensky redistribution indices,
Foster-Greer-Thorbecke poverty measures including the Sen index, growth
incidence curves following Ravallion and Chen (2003)
<doi:10.1016/S0165-1765(02)00205-7>, and Wolfson polarisation. All
functions accept optional survey weights and work with data from any
source.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between inequality versions 0.2.0 dated 2026-09-08 and 0.2.1 dated 2026-11-01
DESCRIPTION | 8 +++--- MD5 | 16 ++++++------- NAMESPACE | 54 +++++++++++++++++++++++++--------------------- NEWS.md | 16 +++++++++++++ R/sample_data.R | 10 +++++++- R/utils.R | 26 ++++++++++++++++++++++ man/inequality-package.Rd | 5 ++++ man/iq_sample_data.Rd | 6 +++++ tests/testthat/Rplots.pdf |binary 9 files changed, 104 insertions(+), 37 deletions(-)
Title: Unified Climate Indices for Temperature, Precipitation, and
Drought
Description: Compute the standard suite of climate indices from daily
weather observations. Provides the canonical 'ETCCDI' 27 (Expert
Team on Climate Change Detection and Indices), the 'ET-SCI'
heatwave and cold-wave families plus the Excess Heat Factor of
Nairn and Fawcett (2013), and agroclimatic, drought, and
human-comfort families. Drought indices ('SPI', 'SPEI') accept a
choice of distribution (gamma or Pearson III for SPI; log-logistic
or generalised extreme value for SPEI). Reference
evapotranspiration is available via Hargreaves and the FAO-56
Penman-Monteith method (Allen et al. 1998). Percentile-based
indices support the Zhang (2005) in-base bootstrap. Daily inputs
are numeric vectors plus a 'Date' vector; outputs are tidy data
frames. Optional gridded support via 'terra' applies any index
over a 'SpatRaster' and reads 'netCDF' input. No external API
calls; pairs with data packages such as 'readnoaa'. References:
Alexander et al. (2006) <doi:10.1029/2005JD006290>; Zhang et al.
(201 [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between climatekit versions 0.2.2 dated 2026-09-09 and 0.2.3 dated 2026-11-01
DESCRIPTION | 8 +-- MD5 | 16 +++---- NAMESPACE | 6 +- NEWS.md | 16 +++++++ R/drought.R | 52 ++++++++++--------------- README.md | 68 +++++++++++++++++++-------------- man/climatekit-package.Rd | 5 ++ tests/testthat/test-drought.R | 15 +++++-- tests/testthat/test-v022-regressions.R | 34 ++++++++++++++++ 9 files changed, 143 insertions(+), 77 deletions(-)
Title: Access Carbon Market Data from Emissions Trading Systems and
Voluntary Registries
Description: Unified access to carbon market data from compliance
emissions trading systems ('EU ETS', 'UK ETS', 'RGGI', California
Cap-and-Trade) and voluntary carbon markets (Verra, Gold Standard,
American Carbon Registry, Climate Action Reserve, via the Berkeley
Voluntary Registry Offsets Database and the 'CarbonPlan' 'OffsetsDB'
API). Includes cross-market price data from the 'International
Carbon Action Partnership' ('ICAP') Allowance Price Explorer
<https://icapcarbonaction.com/en/ets-prices>, global carbon pricing
from the World Bank Carbon Pricing Dashboard
<https://carbonpricingdashboard.worldbank.org/>, and the historical
'RFF' World Carbon Pricing Database following Dolphin, Pollitt and
Newbery (2020) <doi:10.1038/s41597-022-01659-x>. Data is downloaded
from public sources on first use and cached locally.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between carbondata versions 0.2.0 dated 2026-09-09 and 0.2.1 dated 2026-11-01
DESCRIPTION | 8 ++--- MD5 | 56 +++++++++++++++++++-------------------- NAMESPACE | 14 ++++++--- NEWS.md | 11 +++++++ R/compliance.R | 53 ++++++++++++++++++++++++++++++++++-- man/carbondata-package.Rd | 5 +++ man/co2_cache_info.Rd | 4 +- man/co2_cad_trust.Rd | 6 ++-- man/co2_california_caps.Rd | 12 ++++---- man/co2_california_prices.Rd | 12 ++++---- man/co2_clear_cache.Rd | 4 +- man/co2_ecp_prices.Rd | 10 +++--- man/co2_euets_allocations.Rd | 12 ++++---- man/co2_euets_emissions.Rd | 12 ++++---- man/co2_euets_files.Rd | 12 ++++---- man/co2_euets_installations.Rd | 12 ++++---- man/co2_euets_price.Rd | 12 ++++---- man/co2_euets_surrendered.Rd | 12 ++++---- man/co2_icap_prices.Rd | 10 +++--- man/co2_icap_systems.Rd | 10 +++--- man/co2_offsets_db.Rd | 6 ++-- man/co2_rff_pricing.Rd | 10 +++--- man/co2_rggi_allowances.Rd | 18 +++++++----- man/co2_rggi_state_proceeds.Rd | 12 ++++---- man/co2_ukets.Rd | 12 ++++---- man/co2_ukets_allocations.Rd | 12 ++++---- man/co2_vrod.Rd | 6 ++-- man/co2_world_bank.Rd | 10 +++--- tests/testthat/test-compliance.R | 14 +++++++++ 29 files changed, 236 insertions(+), 151 deletions(-)
Title: Download and Tidy Australian Taxation Office Data
Description: Fetch Australian Taxation Office (ATO) Taxation
Statistics and related datasets via the data.gov.au Comprehensive
Knowledge Archive Network ('CKAN') API
<https://data.gov.au/data/api/3/>. Provides tidy access to
individual, company, superannuation, goods and services tax
(GST), fringe benefits tax (FBT), Voluntary Tax Transparency
Code (VTTC), Pay As You Go (PAYG) withholding, charity,
excise, and Corporate Tax Transparency data, plus Petroleum
Resource Rent Tax, Medicare Levy Surcharge, and fuel tax
credit aggregates.
Includes reproducibility helpers (snapshot pinning, SHA-256
cache integrity, session manifest, optional 'Zenodo' deposit),
classification crosswalks (ANZSIC 2006 to 2020, ANZSCO 2013
to 2021), panel harmonisation, reconciliation against Final
Budget Outcome totals, and real-terms and per-capita helpers
backed by bundled Australian Bureau of Statistics (ABS)
Consumer Price Index and Estimated Resident Population series.
Bridges to the 'taxstats' 2 per cent microdata [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between ato versions 0.1.1 dated 2026-09-08 and 0.1.2 dated 2026-11-01
DESCRIPTION | 8 - MD5 | 128 +++++++++++++++---------------- NEWS.md | 53 ++++++++++++ R/deflate.R | 2 R/reconcile.R | 14 +-- R/utils.R | 38 ++++++++- inst/doc/methodology.R | 4 inst/doc/methodology.Rmd | 23 ++--- inst/doc/methodology.html | 61 +++++++------- inst/extdata/abs_cpi_annual.csv | 62 +++++++-------- inst/extdata/abs_erp_annual.csv | 63 +++++++-------- inst/extdata/budget_reference_totals.csv | 76 +++++++++++++----- man/ato-package.Rd | 5 + man/ato_cache_info.Rd | 6 - man/ato_catalog.Rd | 28 +++--- man/ato_charities.Rd | 28 +++--- man/ato_cite.Rd | 28 +++--- man/ato_clear_cache.Rd | 6 - man/ato_compliance.Rd | 20 ++-- man/ato_crosswalk.Rd | 14 +-- man/ato_deflate.Rd | 14 +-- man/ato_deposit_zenodo.Rd | 12 +- man/ato_division293.Rd | 20 ++-- man/ato_download.Rd | 28 +++--- man/ato_excise.Rd | 28 +++--- man/ato_fbt.Rd | 28 +++--- man/ato_fuel_tax_credits.Rd | 20 ++-- man/ato_gst.Rd | 4 man/ato_harmonise.Rd | 14 +-- man/ato_help.Rd | 28 +++--- man/ato_individuals.Rd | 12 +- man/ato_individuals_age.Rd | 12 +- man/ato_individuals_occupation.Rd | 12 +- man/ato_individuals_postcode.Rd | 12 +- man/ato_individuals_sex.Rd | 12 +- man/ato_individuals_state.Rd | 12 +- man/ato_industry.Rd | 4 man/ato_international.Rd | 20 ++-- man/ato_irpd.Rd | 28 +++--- man/ato_manifest.Rd | 12 +- man/ato_manifest_clear.Rd | 12 +- man/ato_manifest_write.Rd | 12 +- man/ato_medicare_levy.Rd | 20 ++-- man/ato_meta.Rd | 6 - man/ato_payg.Rd | 28 +++--- man/ato_per_capita.Rd | 16 +-- man/ato_prrt.Rd | 20 ++-- man/ato_rba.Rd | 20 ++-- man/ato_rdti.Rd | 28 +++--- man/ato_reconcile.Rd | 24 +++-- man/ato_schema_map.Rd | 14 +-- man/ato_sha256.Rd | 12 +- man/ato_sme_benchmarks.Rd | 28 +++--- man/ato_snapshot.Rd | 12 +- man/ato_state_tax.Rd | 20 ++-- man/ato_tax_expenditures.Rd | 20 ++-- man/ato_tax_gaps.Rd | 28 +++--- man/ato_to_taxstats.Rd | 14 +-- man/ato_top_taxpayers.Rd | 28 +++--- man/ato_vttc.Rd | 28 +++--- man/ato_whm.Rd | 20 ++-- tests/testthat/test-deflate.R | 4 tests/testthat/test-reconcile.R | 17 +++- tests/testthat/test-utils.R | 18 ++++ vignettes/methodology.Rmd | 23 ++--- 65 files changed, 818 insertions(+), 653 deletions(-)
Title: Download and Tidy Data from the 'OECD'
Description: Provides clean, tidy access to key economic indicators published
by the 'Organisation for Economic Co-operation and Development' ('OECD'),
covering GDP, CPI inflation, unemployment, tax revenue, government deficit,
health expenditure, education expenditure, income inequality, labour
productivity, and current account balance across all
38 'OECD' member countries. Data is downloaded from the 'OECD Data Explorer'
API <https://data-explorer.oecd.org> on first use and cached locally for
subsequent calls. Returns tidy long-format data frames ready for analysis
and visualisation.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between readoecd versions 0.3.4 dated 2026-09-09 and 0.3.5 dated 2026-11-01
DESCRIPTION | 8 ++--- MD5 | 58 ++++++++++++++++++++-------------------- NEWS.md | 28 +++++++++++++++++++ R/cpi.R | 2 - R/deficit.R | 2 - R/education.R | 2 - R/gdp.R | 2 - R/health.R | 2 - R/inequality.R | 2 - R/labour.R | 2 - R/productivity.R | 2 - R/tax.R | 2 - R/trade.R | 2 - R/utils.R | 30 ++++++++++++++++++++ inst/CITATION | 2 - man/check_oecd_api.Rd | 6 ++-- man/clear_oecd_cache.Rd | 10 ++++-- man/get_oecd_cpi.Rd | 6 ++-- man/get_oecd_current_account.Rd | 4 +- man/get_oecd_deficit.Rd | 4 +- man/get_oecd_education.Rd | 6 ++-- man/get_oecd_gdp.Rd | 6 ++-- man/get_oecd_health.Rd | 6 ++-- man/get_oecd_inequality.Rd | 6 ++-- man/get_oecd_productivity.Rd | 4 +- man/get_oecd_tax.Rd | 4 +- man/get_oecd_unemployment.Rd | 6 ++-- man/list_oecd_countries.Rd | 6 ++-- man/readoecd-package.Rd | 5 +++ tests/testthat/test-utils.R | 27 ++++++++++++++++++ 30 files changed, 172 insertions(+), 80 deletions(-)
Title: Access 'NOAA' Climate and Weather Data
Description: Provides clean, tidy access to climate and weather data from the
'National Oceanic and Atmospheric Administration' ('NOAA') via the 'National
Centers for Environmental Information' ('NCEI') Data Service API
<https://www.ncei.noaa.gov/support/access-data-service-api-user-documentation>. Covers daily weather
observations, monthly and annual summaries, and 30-year climate normals from
over 100,000 stations across 180 countries. No API key is required.
Dedicated functions handle the most common datasets, while a generic fetcher
provides access to all 'NCEI' datasets. Station discovery functions help
users find stations by location or name. Data is downloaded on first use
and cached locally for subsequent calls. This package is not endorsed or
certified by 'NOAA'.
Author: Charles Coverdale [aut, cre, cph]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between readnoaa versions 0.2.1 dated 2026-09-09 and 0.2.2 dated 2026-11-01
DESCRIPTION | 8 +- MD5 | 40 ++++++------ NEWS.md | 26 +++++++ R/get.R | 10 ++- R/normals.R | 14 +++- README.md | 137 +++++++++++++++++++++++------------------- inst/CITATION | 2 man/cache_info.Rd | 10 +-- man/clear_cache.Rd | 10 +-- man/list_datasets.Rd | 10 +-- man/list_datatypes.Rd | 10 +-- man/noaa_annual.Rd | 8 +- man/noaa_coverage.Rd | 6 - man/noaa_daily.Rd | 8 +- man/noaa_get.Rd | 16 ++-- man/noaa_monthly.Rd | 8 +- man/noaa_nearby.Rd | 6 - man/noaa_normals.Rd | 18 +++-- man/noaa_stations.Rd | 6 - man/readnoaa-package.Rd | 5 + tests/testthat/test-normals.R | 27 ++++++++ 21 files changed, 240 insertions(+), 145 deletions(-)
Title: Access 'European Central Bank' Data
Description: Provides clean, tidy access to statistical data published by the
'European Central Bank' ('ECB') via the 'ECB Data Portal' API
<https://data.ecb.europa.eu>. Covers policy interest rates, 'EURIBOR',
euro exchange rates, harmonised consumer price inflation ('HICP'), euro area
yield curves, the euro short-term rate ('ESTR'), monetary aggregates (M1,
M2, M3), mortgage and lending rates, GDP, unemployment, and government
debt-to-GDP. Each dataset has a dedicated function that abstracts away the
underlying 'SDMX' key structure, so users do not need to know series codes.
A generic fetcher is also provided for direct access to any of the 'ECB'
100-plus dataflows. Data is downloaded on first use and cached locally for
subsequent calls.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between readecb versions 0.1.4 dated 2026-09-09 and 0.1.5 dated 2026-11-01
DESCRIPTION | 8 ++--- MD5 | 60 ++++++++++++++++++++--------------------- NEWS.md | 41 ++++++++++++++++++++++++++++ R/ecb_gdp.R | 2 - R/ecb_government_debt.R | 2 - R/ecb_hicp.R | 52 ++++++++++++++++++++++++++++------- R/ecb_unemployment.R | 2 - R/list_helpers.R | 10 ++++++ R/utils.R | 25 +++++++++++++++-- README.md | 31 ++++++++++----------- inst/CITATION | 2 - man/clear_cache.Rd | 8 ++--- man/ecb_estr.Rd | 6 ++-- man/ecb_euribor.Rd | 6 ++-- man/ecb_exchange_rate.Rd | 4 +- man/ecb_gdp.Rd | 6 ++-- man/ecb_get.Rd | 8 ++--- man/ecb_government_debt.Rd | 6 ++-- man/ecb_hicp.Rd | 16 ++++++++-- man/ecb_lending_rates.Rd | 6 ++-- man/ecb_money_supply.Rd | 6 ++-- man/ecb_mortgage_rates.Rd | 6 ++-- man/ecb_policy_rates.Rd | 6 ++-- man/ecb_unemployment.Rd | 6 ++-- man/ecb_yield_curve.Rd | 8 ++--- man/list_ecb_dataflows.Rd | 8 ++--- man/list_exchange_rates.Rd | 4 +- man/readecb-package.Rd | 5 +++ tests/testthat/test-cache.R | 22 +++++++++++++++ tests/testthat/test-ecb_gdp.R | 10 ++++++ tests/testthat/test-ecb_hicp.R | 33 ++++++++++++++++++++++ 31 files changed, 299 insertions(+), 116 deletions(-)
Title: Access 'Office for Budget Responsibility' Data
Description: Provides clean, tidy access to data published by the 'Office for
Budget Responsibility' ('OBR'), the UK's independent fiscal watchdog. Covers
the Public Finances Databank (outturn for PSNB, PSND, receipts, and
expenditure since 1946), the Historical Official Forecasts Database (every
'OBR' forecast since 2010), the Economic and Fiscal Outlook detailed forecast
tables (five-year projections from the latest Budget), the monthly
profiles for the public finances (the 'OBR' forecast apportioned across
the months of the fiscal year), and the Welfare Trends Report
(incapacity benefit spending and caseloads). All returned
objects carry provenance metadata recording the source URL, publication
vintage, retrieval time, and file fingerprint, so analyses can be audited
and reproduced. Data is downloaded from the 'OBR' on first use and cached
locally for subsequent calls. Data is sourced from the 'OBR' website
<https://obr.uk>.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between obr versions 0.6.2 dated 2026-08-24 and 0.6.3 dated 2026-11-01
DESCRIPTION | 10 - MD5 | 106 ++++++------ NAMESPACE | 6 NEWS.md | 93 +++++++++++ R/efo.R | 4 R/efo_catalogue.R | 10 - R/efo_dispatcher.R | 83 +++------ R/forecasts.R | 26 ++- R/policy_measures.R | 10 - R/public_finances.R | 32 +++ R/tbl.R | 13 + R/utils.R | 84 ++++++--- R/vintages.R | 4 R/welfare.R | 51 ++++-- README.md | 286 ++++++++++++++++++++++------------ inst/doc/vintages.html | 14 - man/clear_cache.Rd | 8 man/get_efo_economy.Rd | 12 - man/get_efo_fiscal.Rd | 12 - man/get_efo_table.Rd | 19 +- man/get_expenditure.Rd | 10 - man/get_forecast_revisions.Rd | 12 - man/get_forecasts.Rd | 12 - man/get_incapacity_caseloads.Rd | 6 man/get_incapacity_spending.Rd | 9 - man/get_monthly_profiles.Rd | 12 - man/get_policy_measures.Rd | 4 man/get_psnb.Rd | 10 - man/get_psnd.Rd | 10 - man/get_public_finances.Rd | 10 - man/get_receipts.Rd | 10 - man/get_welfare_spending.Rd | 12 - man/list_efo_economy_measures.Rd | 12 - man/list_forecast_series.Rd | 12 - man/obr-package.Rd | 5 man/obr_actual_vs_forecast.Rd | 12 - man/obr_as_of.Rd | 10 - man/obr_compare_vintages.Rd | 12 - man/obr_efo_catalogue.Rd | 17 +- man/obr_efo_vintages.Rd | 10 - man/obr_fiscal_rules.Rd | 4 man/obr_forecast_panel.Rd | 12 - man/obr_headroom.Rd | 4 man/obr_pin.Rd | 10 - man/obr_pinned.Rd | 10 - man/obr_unpin.Rd | 10 - man/policy_measures_summary.Rd | 4 tests/testthat/test-efo-table.R | 29 ++- tests/testthat/test-forecasts.R | 19 ++ tests/testthat/test-public-finances.R | 6 tests/testthat/test-tbl.R | 11 + tests/testthat/test-utils.R | 41 ++++ tests/testthat/test-vintages.R | 4 tests/testthat/test-welfare.R | 12 + 54 files changed, 816 insertions(+), 450 deletions(-)
Title: Download and Tidy 'HMRC' Statistical Data
Description: Provides functions to download, parse, and tidy statistical
data published by 'HM Revenue and Customs' ('HMRC') on 'GOV.UK'.
Returns annotated 'hmrc_tbl' data frames with provenance metadata
(source URL, publication date, fetch time, cell methods) for
reproducible fiscal research. Covers monthly tax receipts (42 series),
'VAT' (from 1973), fuel duties (from 1990), tobacco duties (from 1991),
'Corporation Tax' receipts, stamp duty, research and development tax
credits (from 2000), tax gap estimates (from 2005), 'Income Tax'
liabilities by income range, Capital Gains Tax, Inheritance Tax, the
Patent Box, creative industries reliefs, and monthly property
transaction counts. File URLs are resolved at runtime via the 'GOV.UK'
Content API <https://www.gov.uk/api/content>, so data is always current
without hardcoded URLs. Files are cached locally between sessions.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between hmrc versions 0.4.0 dated 2026-04-26 and 0.4.1 dated 2026-11-01
DESCRIPTION | 26 - MD5 | 145 +++---- NEWS.md | 110 +++++ R/data.R | 11 R/deprec.R | 2 R/hmrc-package.R | 40 - R/hmrc-tbl.R | 25 - R/hmrc_cache_info.R | 2 R/hmrc_capital_gains.R | 145 +++---- R/hmrc_clear_cache.R | 6 R/hmrc_corporation_tax.R | 41 + R/hmrc_creative_industries.R | 161 ++++--- R/hmrc_fuel_duties.R | 124 ++---- R/hmrc_income_tax_stats.R | 114 +++-- R/hmrc_inheritance_tax.R | 52 +- R/hmrc_list_tax_heads.R | 4 R/hmrc_patent_box.R | 62 +-- R/hmrc_property_transactions.R | 65 +-- R/hmrc_rd_credits.R | 128 +++--- R/hmrc_stamp_duty.R | 89 ++-- R/hmrc_tax_gap.R | 174 +++++--- R/hmrc_tax_receipts.R | 102 +++- R/hmrc_tobacco_duties.R | 102 +--- R/hmrc_vat.R | 87 +--- R/utils-dates.R | 2 R/utils-govuk-api.R | 102 +++- R/utils-parse.R |only README.md | 475 ++++++++++++----------- data/catalogue.rda |binary data/tax_heads.rda |binary inst/WORDLIST | 138 +++--- inst/doc/uk-tax-receipts.R | 33 - inst/doc/uk-tax-receipts.Rmd | 73 +-- inst/doc/uk-tax-receipts.html | 80 +-- man/hmrc-package.Rd | 45 +- man/hmrc_cache_info.Rd | 14 man/hmrc_capital_gains.Rd | 51 +- man/hmrc_clear_cache.Rd | 16 man/hmrc_corporation_tax.Rd | 35 - man/hmrc_creative_industries.Rd | 54 +- man/hmrc_fuel_duties.Rd | 44 +- man/hmrc_income_tax_stats.Rd | 46 +- man/hmrc_inheritance_tax.Rd | 41 + man/hmrc_list_tax_heads.Rd | 16 man/hmrc_meta.Rd | 25 - man/hmrc_patent_box.Rd | 37 - man/hmrc_property_transactions.Rd | 41 + man/hmrc_publications.Rd | 12 man/hmrc_rd_credits.Rd | 59 +- man/hmrc_search.Rd | 12 man/hmrc_stamp_duty.Rd | 45 +- man/hmrc_tax_gap.Rd | 80 ++- man/hmrc_tax_receipts.Rd | 51 +- man/hmrc_tobacco_duties.Rd | 42 +- man/hmrc_vat.Rd | 36 - man/tax_heads.Rd | 11 tests/testthat/setup.R |only tests/testthat/test-hmrc_capital_gains.R | 17 tests/testthat/test-hmrc_clear_cache.R | 2 tests/testthat/test-hmrc_corporation_tax.R | 12 tests/testthat/test-hmrc_creative_industries.R | 61 ++ tests/testthat/test-hmrc_fuel_duties.R | 22 + tests/testthat/test-hmrc_income_tax_stats.R | 14 tests/testthat/test-hmrc_inheritance_tax.R | 14 tests/testthat/test-hmrc_list_tax_heads.R | 1 tests/testthat/test-hmrc_patent_box.R | 4 tests/testthat/test-hmrc_property_transactions.R | 12 tests/testthat/test-hmrc_rd_credits.R | 33 + tests/testthat/test-hmrc_stamp_duty.R | 17 tests/testthat/test-hmrc_tax_gap.R | 32 + tests/testthat/test-hmrc_tax_receipts.R | 15 tests/testthat/test-hmrc_tobacco_duties.R | 16 tests/testthat/test-hmrc_vat.R | 15 tests/testthat/test-utils-parse.R |only vignettes/uk-tax-receipts.Rmd | 73 +-- 75 files changed, 2249 insertions(+), 1644 deletions(-)
Title: Identify and Correct Invalid HGNC Human Gene Symbols and MGI
Mouse Gene Symbols
Description: Contains functions for
identifying and correcting HGNC human gene symbols and MGI mouse gene symbols
which have been converted to date format by Excel, withdrawn, or aliased.
Also contains functions for reversibly converting between HGNC
symbols and valid R names.
Author: Sehyun Oh [aut],
Ayush Aggarwal [aut],
Markus Riester [aut],
Levi Waldron [aut, cre]
Maintainer: Levi Waldron <lwaldron.research@gmail.com>
Diff between HGNChelper versions 0.8.15 dated 2024-11-16 and 0.8.16 dated 2026-11-01
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- NEWS | 5 +++++ R/data.R | 2 +- build/vignette.rds |binary data/hgnc.table.rda |binary data/mouse.table.rda |binary inst/doc/index.R | 2 +- inst/doc/index.html | 22 +++++++++++----------- inst/extdata/date_of_last_update.txt | 2 +- man/HGNChelper-package.Rd | 1 + man/hgnc.table.Rd | 4 ++-- man/mouse.table.Rd | 6 +++--- tests/testthat/test_checkGeneSymbols.R | 4 ++-- 14 files changed, 45 insertions(+), 39 deletions(-)
Title: HM Treasury Green Book Cost-Benefit Analysis Primitives
Description: Implements cost-benefit analysis primitives from HM
Treasury Green Book guidance (HM Treasury, 2026): the kinked
Social Time Preference Rate (STPR) as revised in October 2026,
with the earlier schedule retained for reproducibility, discount factors,
net present value (NPV), equivalent annual cost, and real-terms
rebasing using the GDP deflator. Designed for UK central government
appraisal and evaluation. Bundled parameter tables carry vintage
metadata for reproducibility.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between greenbook versions 0.1.1 dated 2026-08-24 and 0.2.0 dated 2026-11-01
DESCRIPTION | 13 +-- MD5 | 126 +++++++++++++++++------------------ NAMESPACE | 12 +-- NEWS.md | 56 +++++++++++++++ R/appraise.R | 13 ++- R/carbon.R | 7 + R/deflator.R | 15 +++- R/discounting.R | 35 ++++++--- R/distributional.R | 27 ++++--- R/lookups.R | 13 ++- R/reporting.R | 3 R/stpr.R | 121 +++++++++++++++++++++++++-------- R/validate.R | 7 + README.md | 23 +++++- inst/CITATION | 2 inst/doc/carbon-and-environment.html | 52 +++++++------- inst/doc/greenbook.R | 8 +- inst/doc/greenbook.Rmd | 24 ++++-- inst/doc/greenbook.html | 109 ++++++++++++++++-------------- inst/extdata/data_versions.csv | 12 +-- inst/extdata/gdp_deflator.csv | 79 +++++++++++---------- inst/extdata/stpr_schedule.csv | 17 ++-- man/gb_apply_ob.Rd | 6 - man/gb_appraise.Rd | 22 +++--- man/gb_carbon_npv.Rd | 10 +- man/gb_carbon_value.Rd | 4 - man/gb_categories.Rd | 6 - man/gb_compare.Rd | 16 ++-- man/gb_cost_per_unit.Rd | 10 +- man/gb_data_versions.Rd | 4 - man/gb_deflator.Rd | 22 ++++-- man/gb_discount.Rd | 20 +++-- man/gb_discount_factor.Rd | 21 ++++- man/gb_dist_weight.Rd | 22 +++--- man/gb_dist_weighted_npv.Rd | 13 +-- man/gb_eanc.Rd | 16 ++-- man/gb_economic_case.Rd | 16 ++-- man/gb_headline.Rd | 10 +- man/gb_npv.Rd | 18 ++--- man/gb_optimism_bias.Rd | 6 - man/gb_place_based.Rd | 16 ++-- man/gb_progression.Rd | 16 ++-- man/gb_qaly.Rd | 6 - man/gb_real.Rd | 6 - man/gb_rebase.Rd | 6 - man/gb_risk_register.Rd | 16 ++-- man/gb_schedule_table.Rd | 14 ++- man/gb_sensitivity_ob.Rd | 16 ++-- man/gb_stpr.Rd | 82 +++++++++++++--------- man/gb_to_excel.Rd | 10 +- man/gb_to_latex.Rd | 10 +- man/gb_to_word.Rd | 10 +- man/gb_validate.Rd | 16 ++-- man/gb_vpf.Rd | 6 - man/gb_wellby.Rd | 6 - man/greenbook-package.Rd | 5 + tests/testthat/test-appraise.R | 6 + tests/testthat/test-discounting.R | 27 ++++--- tests/testthat/test-distributional.R | 8 +- tests/testthat/test-invariants.R | 25 ++++-- tests/testthat/test-lookups.R | 7 + tests/testthat/test-stpr.R | 96 +++++++++++++++----------- tests/testthat/test-validate.R | 5 + vignettes/greenbook.Rmd | 24 ++++-- 64 files changed, 892 insertions(+), 563 deletions(-)
Title: Access 'Federal Reserve Economic Data'
Description: Provides clean, tidy access to economic data from the 'Federal
Reserve Economic Data' ('FRED') API <https://fred.stlouisfed.org/docs/api/fred/>.
'FRED' is maintained by the 'Federal Reserve Bank of St. Louis' and contains over
800,000 time series from 118 sources covering GDP, employment, inflation,
interest rates, trade, and more. Dedicated functions fetch series observations,
search for series, browse categories, releases, and tags, and retrieve series
metadata. Multiple series can be fetched in a single call, in long or wide
format. Server-side unit transformations (percent change, log, etc.) and
frequency aggregation are supported, with readable transform aliases such as
'yoy_pct' and 'log_diff'. Real-time and vintage helpers (built on 'ALFRED')
return a series as it appeared on a given date, the first-release version,
every revision, or a panel of selected vintages. An offline curated catalogue
of around fifty popular series, NBER recession reference dates, and FOMC
meeting [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between fred versions 0.3.1 dated 2026-09-09 and 0.3.2 dated 2026-11-01
DESCRIPTION | 8 MD5 | 95 - NEWS.md | 29 R/cache.R | 2 R/manifest.R | 3 R/request.R | 14 R/series.R | 23 R/vintages.R | 6 inst/doc/inflation-revisions.html | 12 inst/doc/multi-series-workflows.html | 1783 +++++++++++++++++------------------ inst/doc/nowcasting-with-fred.html | 36 man/clear_cache.Rd | 10 man/fred-package.Rd | 5 man/fred_aggregate.Rd | 6 man/fred_all_vintages.Rd | 11 man/fred_as_of.Rd | 11 man/fred_browse.Rd | 4 man/fred_cache_info.Rd | 10 man/fred_catalogue.Rd | 4 man/fred_category.Rd | 6 man/fred_category_children.Rd | 6 man/fred_category_series.Rd | 6 man/fred_cite_series.Rd | 6 man/fred_event_window.Rd | 6 man/fred_first_release.Rd | 11 man/fred_fomc_dates.Rd | 4 man/fred_get_key.Rd | 10 man/fred_info.Rd | 10 man/fred_interpolate.Rd | 6 man/fred_manifest.Rd | 6 man/fred_real_time_panel.Rd | 11 man/fred_recession_dates.Rd | 4 man/fred_related_tags.Rd | 4 man/fred_release_dates.Rd | 6 man/fred_release_series.Rd | 6 man/fred_releases.Rd | 6 man/fred_request.Rd | 10 man/fred_search.Rd | 10 man/fred_series.Rd | 16 man/fred_set_key.Rd | 10 man/fred_source_releases.Rd | 4 man/fred_sources.Rd | 4 man/fred_tags.Rd | 4 man/fred_updates.Rd | 10 man/fred_vintage_revisions.Rd | 9 man/fred_vintages.Rd | 10 man/plot.fred_tbl.Rd | 2 tests/testthat/test-cache.R | 38 tests/testthat/test-request.R |only 49 files changed, 1217 insertions(+), 1096 deletions(-)
Title: Debt Sustainability Analysis and Fiscal Risk Assessment
Description: Analyses government debt sustainability using the standard debt
dynamics framework from Blanchard (1990) <doi:10.1787/435618162862>
and the IMF Debt Sustainability Analysis methodology (IMF, 2013) and the
Sovereign Risk and Debt Sustainability Framework (IMF, 2022). Projects
debt-to-GDP paths, decomposes historical debt changes into interest,
growth, and primary balance contributions, and estimates fiscal reaction
functions following Bohn (1998) <doi:10.1162/003355398555793>. Produces stochastic
fan charts via Monte Carlo simulation, standardised stress tests, and IMF-
style heat map risk assessments. Computes S1/S2 sustainability gap
indicators used by the European Commission. All methods are pure
computation with no external dependencies beyond base R; works with fiscal
data from any source.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between debtkit versions 0.1.3 dated 2026-09-08 and 0.1.4 dated 2026-11-01
DESCRIPTION | 10 +-- MD5 | 35 ++++++------ NAMESPACE | 82 +++++++++++++++------------- NEWS.md | 51 +++++++++++++++++ R/bohn.R | 4 + R/decompose.R | 2 R/fan_chart.R | 9 +++ R/project.R | 2 R/rg.R | 2 R/sustainability_gap.R | 39 ++++--------- README.md | 88 +++++++++++++++++++------------ man/debtkit-package.Rd | 7 ++ man/dk_decompose.Rd | 2 man/dk_fan_chart.Rd | 10 +++ man/dk_project.Rd | 2 man/dk_rg.Rd | 2 man/dk_sustainability_gap.Rd | 6 +- tests/testthat/Rplots.pdf |only tests/testthat/test-sustainability_gap.R | 21 +++++++ 19 files changed, 247 insertions(+), 127 deletions(-)
Title: Download Australian Energy Market Operator Data
Description: Fetch Australian Energy Market Operator (AEMO)
public data from 'NEMweb' <http://nemweb.com.au> and the
Market Management System Data Model (MMSDM) historical
archive. Provides tidy access to 5-minute and 30-minute
wholesale electricity prices, regional demand, dispatch-unit
output, interconnector flows, rooftop photovoltaic generation,
generator bids, predispatch forecasts, frequency control
ancillary services markets, and gas market data across the
National Electricity Market (NEM) regions. Data is published
by AEMO under its Copyright Permissions Notice
<https://www.aemo.com.au/privacy-and-legal-notices/copyright-permissions>.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between aemo versions 0.4.2 dated 2026-09-09 and 0.4.3 dated 2026-11-01
DESCRIPTION | 8 - MD5 | 110 ++++++++++---------- NEWS.md | 93 ++++++++++++++++ R/aemo-package.R | 2 R/aemo_tbl.R | 4 R/bids.R | 35 ++---- R/constraints.R | 2 R/csv_parse.R | 54 +++++++-- R/demand.R | 2 R/dispatch.R | 6 - R/forecasts.R | 4 R/gas.R | 2 R/http.R | 14 ++ R/interconnector.R | 2 R/loss_factors.R | 111 ++++++++++++-------- R/nemweb.R | 9 + R/price.R | 15 +- R/reference.R | 6 - R/rooftop_pv.R | 2 R/snapshot.R | 2 R/utils.R | 197 ++++++++++++++++++++++-------------- man/aemo-package.Rd | 7 + man/aemo_bids.Rd | 20 +-- man/aemo_cache_info.Rd | 6 - man/aemo_clear_cache.Rd | 6 - man/aemo_constraints.Rd | 20 +-- man/aemo_dispatch_units.Rd | 20 +-- man/aemo_dlf.Rd | 18 +-- man/aemo_fcas.Rd | 4 man/aemo_fcas_enablement.Rd | 20 +-- man/aemo_gencon.Rd | 20 +-- man/aemo_interconnector.Rd | 20 +-- man/aemo_interconnectors.Rd | 18 +-- man/aemo_market_notices.Rd | 20 +-- man/aemo_mlf.Rd | 48 ++++---- man/aemo_nemweb_download.Rd | 4 man/aemo_nemweb_ls.Rd | 6 - man/aemo_outages.Rd | 20 +-- man/aemo_participants.Rd | 18 +-- man/aemo_pasa.Rd | 4 man/aemo_predispatch.Rd | 4 man/aemo_price.Rd | 17 +-- man/aemo_price_caps.Rd | 18 +-- man/aemo_regions.Rd | 18 +-- man/aemo_rooftop_pv.Rd | 20 +-- man/aemo_settlement.Rd | 18 +-- man/aemo_snapshot.Rd | 20 +-- man/aemo_spd_constraints.Rd | 20 +-- man/aemo_throttle.Rd | 6 - man/aemo_units.Rd | 18 +-- man/print.aemo_tbl.Rd | 2 tests/testthat/test-demand.R | 4 tests/testthat/test-loss-factors.R | 29 +++++ tests/testthat/test-pinned-values.R | 100 +++++++++++------- tests/testthat/test-price.R | 4 tests/testthat/test-utils.R | 41 +++++++ 56 files changed, 824 insertions(+), 494 deletions(-)
Title: Fit Log-Ratio Lasso Regression for Compositional Data
Description: Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.
Author: Teng Fei [aut, cre, cph] ,
Tyler Funnell [aut] ,
Nicholas Waters [aut] ,
Sandeep Raj [aut]
Maintainer: Teng Fei <feit1@mskcc.org>
Diff between FLORAL versions 0.7.0 dated 2026-02-07 and 0.7.1 dated 2026-11-01
DESCRIPTION | 8 MD5 | 26 - NEWS.md | 4 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/Using-FLORAL-for-Microbiome-Analysis.Rmd | 4 inst/doc/Using-FLORAL-for-Microbiome-Analysis.html | 139 +++++----- inst/doc/Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd | 4 inst/doc/Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.html | 27 - inst/doc/Using-FLORAL-with-phyloseq.Rmd | 4 inst/doc/Using-FLORAL-with-phyloseq.html | 5 vignettes/Using-FLORAL-for-Microbiome-Analysis.Rmd | 4 vignettes/Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd | 4 vignettes/Using-FLORAL-with-phyloseq.Rmd | 4 14 files changed, 120 insertions(+), 114 deletions(-)
Title: Nonparametric Preprocessing for Parametric Causal Inference
Description: Selects matched samples of the original treated and
control groups with similar covariate distributions -- can be
used to match exactly on covariates, to match on propensity
scores, or perform a variety of other matching procedures. The
package also implements a series of recommendations offered in
Ho, Imai, King, and Stuart (2007) <DOI:10.1093/pan/mpl013>. (The
'gurobi' package, which is not on CRAN, is optional and comes with
an installation of the Gurobi Optimizer, available at
<https://www.gurobi.com>.)
Author: Daniel Ho [aut] ,
Kosuke Imai [aut] ,
Gary King [aut] ,
Elizabeth Stuart [aut] ,
Alex Whitworth [ctb],
Noah Greifer [cre, aut]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between MatchIt versions 4.8.1 dated 2026-09-26 and 4.8.2 dated 2026-11-01
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 6 ++++++ R/plot.matchit.R | 7 ++++--- build/stage23.rdb |binary inst/doc/MatchIt.html | 10 +++++----- inst/doc/assessing-balance.html | 26 +++++++++++++------------- inst/doc/estimating-effects.html | 4 ++-- inst/doc/matching-methods.html | 4 ++-- inst/doc/sampling-weights.html | 4 ++-- tests/testthat/test-method_null.R | 6 ++++-- tests/testthat/test-method_optimal.R | 6 +++++- tests/testthat/test-plot.R | 12 ++++++++++++ 13 files changed, 70 insertions(+), 45 deletions(-)
Title: Conconi Estimate of Anaerobic Threshold from a TCX File
Description: Analyzes data from a Conconi et al. (1996) <doi:10.1055/s-2007-972887>
treadmill fitness test where speed is augmented by a constant amount every
set number of seconds to estimate the anaerobic (lactate) threshold speed
and heart rate. It reads a TCX file, allows optional removal observations
from before and after the actual test, fits a change-point linear model
where the change-point is the estimate of the lactate threshold, and plots
the data points and fit model. Details of administering the fitness test are
provided in the package vignette. Functions work by default for Garmin
Connect TCX exports but may require additional data preparation for heart
rate, time, and speed data from other sources.
Author: Levi Waldron [aut, cre]
Maintainer: Levi Waldron <lwaldron.research@gmail.com>
Diff between ConconiAnaerobicThresholdTest versions 1.0.0 dated 2024-01-22 and 1.1.0 dated 2026-11-01
DESCRIPTION | 8 +++--- MD5 | 12 +++++----- NEWS.md |only build/vignette.rds |binary inst/doc/usage.Rmd | 15 ++++++++++++ inst/doc/usage.html | 62 +++++++++++++++++++++++++++++++++------------------- inst/scripts |only vignettes/usage.Rmd | 15 ++++++++++++ 8 files changed, 81 insertions(+), 31 deletions(-)
More information about ConconiAnaerobicThresholdTest at CRAN
Permanent link
Title: Publication-Ready Tables for Descriptive Statistics and
Regression Models
Description: Provides publication-ready tables for descriptive statistics
and regression models: frequency tables and cross-tabulations with
association measures (Cramér's V, Kendall's Tau-b, and others),
categorical and continuous summary tables, by group or from a complex
survey design, and regression tables for one or more models side by
side, across more than thirty model classes from mixed-effects to
survival and Bayesian, with robust standard errors, average marginal
effects, and univariable screening. Tables follow APA conventions by
default, can switch to named journal styles such as JAMA, NEJM, or
The Lancet, and render identically in the console and in 'gt',
'tinytable', 'flextable', 'Word', 'Excel', or the clipboard. Declared
missing values in labelled data are honored and disclosed throughout
the descriptive tables. Helpers cover codebooks, variable inspection,
and row-wise summaries.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.14.0 dated 2026-10-31 and 0.14.1 dated 2026-11-01
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ inst/doc/spicy.html | 2 +- tests/testthat/test-table_categorical_svy.R | 2 +- tests/testthat/test-table_continuous_svy.R | 2 +- tests/testthat/test-table_multiresponse.R | 2 +- 7 files changed, 19 insertions(+), 13 deletions(-)
Title: Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Description: Fast OpenMP parallel computing of Breiman's random forests for univariate, multivariate, unsupervised, survival, competing risks, class imbalanced classification and quantile regression. New Mahalanobis splitting for correlated outcomes. Extreme random forests and randomized splitting. Suite of imputation methods for missing data. Fast random forests using subsampling. Confidence regions and standard errors for variable importance. New improved holdout importance. Case-specific importance. Minimal depth variable importance. Visualize trees on your Safari or Google Chrome browser. Anonymous random forests for data privacy.
Author: Hemant Ishwaran [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 3.9.0 dated 2026-09-22 and 3.10.0 dated 2026-11-01
DESCRIPTION | 8 MD5 | 68 ++-- NAMESPACE | 1 NEWS.md | 123 ++++++++ R/generic.predict.rfsrc.R | 31 +- R/imbalanced.rfsrc.R | 4 R/impute.learn.rfsrc.R | 136 +++++++-- R/impute.rfsrc.R | 39 ++ R/partial.rfsrc.R | 3 R/print.rfsrc.R | 28 + R/rfsrc.R | 71 ++++ R/rfsrc.RNGversion.R |only R/sidClustering.rfsrc.R | 43 ++ R/utilities.R | 13 R/utilities_data.R | 71 ++++ R/utilities_impute_learn.R | 575 +++++++++++++++++++++++++++++++++++---- R/utilities_saveload.R | 102 +++++- man/fast.saveload.Rd | 34 ++ man/imbalanced.rfsrc.Rd | 173 ++++++++++- man/impute.learn.rfsrc.Rd | 207 +++++++++++--- man/impute.rfsrc.Rd | 355 ++++++++++++++---------- man/nutrigenomic.Rd | 19 - man/plot.quantreg.rfsrc.Rd | 240 ++++++---------- man/predict.rfsrc.Rd | 49 ++- man/quantreg.rfsrc.Rd | 632 +++++++++++++++++++++---------------------- man/rfsrc.RNGversion.Rd |only man/rfsrc.Rd | 94 ++++-- man/sidClustering.rfsrc.Rd | 12 src/R_init_randomForestSRC.c | 8 src/entry.c | 15 + src/entry.h | 2 src/external.h | 1 src/internal.c | 1 src/random.c | 31 ++ src/random.h | 4 src/rfsrc.c | 68 +--- 36 files changed, 2327 insertions(+), 934 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Fast and Friendly Access to OECD Data
Description: Discover, describe, compare and import statistical datasets from
the Organisation for Economic Co-operation and Development (OECD) via its
public Statistical Data and Metadata eXchange (SDMX) Representational
State Transfer (REST) API <https://sdmx.oecd.org/public/>. Adapts the
discovery workflow of 'eurodata' to OECD-native names, catalogue-resolved
short codes and dataset-scoped metadata. Uses SDMX REST version 2 by
default, streamed downloads, native 'data.table' parsing, defensive
bulk C XML extraction, indexed structural metadata resolution, caching
and bounded HTTP retries. Includes an
explicit version 1 transport for interoperability.
Author: Alek Rutkowski [aut, cre, cph]
Maintainer: Alek Rutkowski <alek.rutkowski@gmail.com>
Diff between OECDdata versions 0.2.5 dated 2026-10-30 and 0.3.4 dated 2026-11-01
OECDdata-0.2.5/OECDdata/inst/VALIDATION.md |only OECDdata-0.2.5/OECDdata/inst/benchmarks |only OECDdata-0.2.5/OECDdata/inst/validation |only OECDdata-0.3.4/OECDdata/DESCRIPTION | 20 OECDdata-0.3.4/OECDdata/MD5 | 52 OECDdata-0.3.4/OECDdata/NAMESPACE | 1 OECDdata-0.3.4/OECDdata/NEWS.md |only OECDdata-0.3.4/OECDdata/R/http.R | 4 OECDdata-0.3.4/OECDdata/R/import.R | 2 OECDdata-0.3.4/OECDdata/R/options.R | 2 OECDdata-0.3.4/OECDdata/R/structure.R | 4 OECDdata-0.3.4/OECDdata/R/xml.R | 108 OECDdata-0.3.4/OECDdata/README.md | 956 -------- OECDdata-0.3.4/OECDdata/build/vignette.rds |binary OECDdata-0.3.4/OECDdata/cleanup |only OECDdata-0.3.4/OECDdata/cleanup.win |only OECDdata-0.3.4/OECDdata/configure |only OECDdata-0.3.4/OECDdata/configure.win |only OECDdata-0.3.4/OECDdata/inst/ATTRIBUTION.md | 11 OECDdata-0.3.4/OECDdata/inst/SOURCES.md | 34 OECDdata-0.3.4/OECDdata/inst/doc/getting-started.R | 174 - OECDdata-0.3.4/OECDdata/inst/doc/getting-started.html | 1157 ++++------ OECDdata-0.3.4/OECDdata/man/OECDdata-package.Rd | 4 OECDdata-0.3.4/OECDdata/src |only OECDdata-0.3.4/OECDdata/tests/testthat.R | 14 OECDdata-0.3.4/OECDdata/tests/testthat/helper-fixtures.R | 12 OECDdata-0.3.4/OECDdata/tests/testthat/test-native-error-handlers.R |only OECDdata-0.3.4/OECDdata/tests/testthat/test-native-xml.R |only OECDdata-0.3.4/OECDdata/tests/testthat/test-regressions.R | 8 OECDdata-0.3.4/OECDdata/tests/testthat/test-search-options.R | 45 OECDdata-0.3.4/OECDdata/tests/testthat/test-xml.R | 6 31 files changed, 901 insertions(+), 1713 deletions(-)
Title: Uncertainty Analysis in Dynamic Site and Slope Response
Description: Estimates the seismic response of sites and slopes from the
results of a seismic hazard analysis. For a site, it computes the
fundamental period of the soil profile and the amplification of
spectral acceleration. For a slope, it computes the fundamental
period, the earthquake-induced displacement, and the pseudostatic
coefficient that keeps a selected quantile of the displacement
within a given limit. Uncertainty in the soil profile and in the
ground motion is represented by Monte Carlo samples. Every result is
reported with its representative value, its applicable quantiles or
dispersion, and the population or conditioning to which it refers.
Author: Alejandro Verri Kozlowski [aut, cre, cph]
Maintainer: Alejandro Verri Kozlowski <averri@fi.uba.ar>
Diff between newmark versions 1.9.0 dated 2026-10-24 and 1.10.0 dated 2026-11-01
newmark-1.10.0/newmark/DESCRIPTION | 6 newmark-1.10.0/newmark/MD5 | 142 +++++----- newmark-1.10.0/newmark/NAMESPACE | 2 newmark-1.10.0/newmark/NEWS.md | 89 ++++++ newmark-1.10.0/newmark/R/assembleDnTables.R | 8 newmark-1.10.0/newmark/R/assembleKmaxTables.R | 4 newmark-1.10.0/newmark/R/buildDnTables.R | 45 ++- newmark-1.10.0/newmark/R/buildKmaxTable.R | 33 -- newmark-1.10.0/newmark/R/buildPGATable.R | 2 newmark-1.10.0/newmark/R/buildQuantileSpline.R | 4 newmark-1.10.0/newmark/R/conditions.R |only newmark-1.10.0/newmark/R/convertAEP.R | 2 newmark-1.10.0/newmark/R/correlateResiduals.R | 4 newmark-1.10.0/newmark/R/data.R | 19 + newmark-1.10.0/newmark/R/describeModule.R | 68 ++++ newmark-1.10.0/newmark/R/estimateAI.R | 12 newmark-1.10.0/newmark/R/estimatePGV.R | 12 newmark-1.10.0/newmark/R/estimateRayleighPeriod.R | 4 newmark-1.10.0/newmark/R/estimateVS30.R | 7 newmark-1.10.0/newmark/R/evaluateSiteFactor.R | 4 newmark-1.10.0/newmark/R/evaluateSiteSa.R | 4 newmark-1.10.0/newmark/R/evaluateSoilLayers.R | 6 newmark-1.10.0/newmark/R/evaluateUniformHazard.R | 6 newmark-1.10.0/newmark/R/integrateDnHazard.R |only newmark-1.10.0/newmark/R/integrateSiteMixture.R | 6 newmark-1.10.0/newmark/R/integrateSiteSpectrum.R | 10 newmark-1.10.0/newmark/R/interpolateSpectrum.R | 4 newmark-1.10.0/newmark/R/listDisplacementFamilies.R |only newmark-1.10.0/newmark/R/listProjectTables.R | 2 newmark-1.10.0/newmark/R/newmark-package.R | 55 ++- newmark-1.10.0/newmark/R/processProject.R | 55 ++- newmark-1.10.0/newmark/R/queryProjectTable.R | 2 newmark-1.10.0/newmark/R/readHazardWorkbook.R | 2 newmark-1.10.0/newmark/R/sampleSoilLayers.R | 17 + newmark-1.10.0/newmark/R/sampleSpectra.R | 17 - newmark-1.10.0/newmark/R/selectDisplacementModels.R | 4 newmark-1.10.0/newmark/R/summarizeProfiles.R | 2 newmark-1.10.0/newmark/data/VancouverSpectra.rda |only newmark-1.10.0/newmark/inst/api/operations.json | 9 newmark-1.10.0/newmark/man/VancouverSpectra.Rd |only newmark-1.10.0/newmark/man/buildDnTables.Rd | 3 newmark-1.10.0/newmark/man/convertAEP.Rd | 2 newmark-1.10.0/newmark/man/describeModule.Rd | 20 + newmark-1.10.0/newmark/man/estimateAI.Rd | 11 newmark-1.10.0/newmark/man/estimatePGV.Rd | 11 newmark-1.10.0/newmark/man/evaluateSiteSa.Rd | 4 newmark-1.10.0/newmark/man/evaluateUniformHazard.Rd | 4 newmark-1.10.0/newmark/man/integrateDnHazard.Rd |only newmark-1.10.0/newmark/man/listDisplacementFamilies.Rd |only newmark-1.10.0/newmark/man/newmark-package.Rd | 56 ++- newmark-1.10.0/newmark/man/processProject.Rd | 4 newmark-1.10.0/newmark/man/sampleSoilLayers.Rd | 7 newmark-1.10.0/newmark/tests/testthat/test-assembleKmaxTables.R | 8 newmark-1.10.0/newmark/tests/testthat/test-buildKmaxTable.R |only newmark-1.10.0/newmark/tests/testthat/test-buildPGATable.R |only newmark-1.10.0/newmark/tests/testthat/test-buildShearTable.R | 1 newmark-1.10.0/newmark/tests/testthat/test-conditions.R |only newmark-1.10.0/newmark/tests/testthat/test-convertAEP.R |only newmark-1.10.0/newmark/tests/testthat/test-displacementModels.R |only newmark-1.10.0/newmark/tests/testthat/test-displacementSampling.R |only newmark-1.10.0/newmark/tests/testthat/test-displacementTables.R |only newmark-1.10.0/newmark/tests/testthat/test-evaluateUniformHazard.R |only newmark-1.10.0/newmark/tests/testthat/test-integrateDnHazard.R |only newmark-1.10.0/newmark/tests/testthat/test-listDisplacementFamilies.R |only newmark-1.10.0/newmark/tests/testthat/test-operations.R | 45 +++ newmark-1.10.0/newmark/tests/testthat/test-processProject.R | 90 +++++- newmark-1.10.0/newmark/tests/testthat/test-profile.R | 10 newmark-1.10.0/newmark/tests/testthat/test-profilePeriods.R |only newmark-1.10.0/newmark/tests/testthat/test-rootModel.R |only newmark-1.10.0/newmark/tests/testthat/test-siteFactor.R |only newmark-1.10.0/newmark/tests/testthat/test-siteMixture.R |only newmark-1.10.0/newmark/tests/testthat/test-siteSpectrum.R |only newmark-1.10.0/newmark/tests/testthat/test-soilRealizations.R |only newmark-1.10.0/newmark/tests/testthat/test-solveColumnPeriod.R |only newmark-1.10.0/newmark/tests/testthat/test-solveKmax.R |only newmark-1.10.0/newmark/tests/testthat/test-solveWedgePeriod.R |only newmark-1.10.0/newmark/tests/testthat/test-summarizeKmax.R |only newmark-1.9.0/newmark/tests/testthat/test-dn-models.R |only newmark-1.9.0/newmark/tests/testthat/test-dn-products.R |only newmark-1.9.0/newmark/tests/testthat/test-dn-sampling.R |only newmark-1.9.0/newmark/tests/testthat/test-hazard-calculations.R |only newmark-1.9.0/newmark/tests/testthat/test-hazard-readers.R |only newmark-1.9.0/newmark/tests/testthat/test-kmax-solve.R |only newmark-1.9.0/newmark/tests/testthat/test-kmax-summary.R |only newmark-1.9.0/newmark/tests/testthat/test-kmax-table.R |only newmark-1.9.0/newmark/tests/testthat/test-period-column.R |only newmark-1.9.0/newmark/tests/testthat/test-period-properties.R |only newmark-1.9.0/newmark/tests/testthat/test-period-wedge.R |only newmark-1.9.0/newmark/tests/testthat/test-realizations.R |only newmark-1.9.0/newmark/tests/testthat/test-roots.R |only newmark-1.9.0/newmark/tests/testthat/test-siteResponse-factor.R |only newmark-1.9.0/newmark/tests/testthat/test-siteResponse-mixture.R |only newmark-1.9.0/newmark/tests/testthat/test-siteResponse-products.R |only newmark-1.9.0/newmark/tests/testthat/test-siteResponse-spectrum.R |only 94 files changed, 693 insertions(+), 251 deletions(-)
Title: Additional Documentation and Regression Tests for
'stats::free1way()'
Description: Function 'stats::free1way()' implements semiparametrically
efficient population- and permutation-based inference in
distribution-free stratified K-sample oneway layouts. This package
provides additional documentation, including a detailed description
of the implementation, and serves as a home for extensive regression tests.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Frank E Harrell Jr [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between free1way.docreg versions 1.0-3 dated 2026-09-08 and 1.1-0 dated 2026-11-01
DESCRIPTION | 11 MD5 | 79 - NAMESPACE | 16 R |only build/partial.rdb |only build/vignette.rds |binary cleanup | 13 inst/NEWS.Rd | 40 inst/REFERENCES.bib | 87 + inst/doc/Wilcoxon.R |only inst/doc/Wilcoxon.Rnw |only inst/doc/Wilcoxon.pdf |only inst/doc/free1way.R | 707 +++++++----- inst/doc/free1way.Rnw | 2337 ++++++++++++++++++++++++++-------------- inst/doc/free1way.pdf |binary inst/nuweb/free1way.w | 750 ++++++++++-- man |only tests/Jeffreys.R |only tests/Jeffreys.Rout.save |only tests/KM.R | 2 tests/bugfixes.R | 15 tests/confint.R | 2 tests/confint.Rout.save | 6 tests/csep.R | 3 tests/edges.R | 3 tests/empirical.R | 14 tests/empirical.Rout.save | 20 tests/exact.R | 2 tests/exact.Rout.save | 6 tests/free1way-Ex.R | 2 tests/free1way-Ex.Rout.save | 9 tests/glm.R | 2 tests/glm.Rout.save | 6 tests/jobsatisfaction.R | 2 tests/jobsatisfaction.Rout.save | 6 tests/logrank.R | 2 tests/logrank.Rout.save | 6 tests/polr.R | 2 tests/polr.Rout.save | 6 tests/power.R | 2 tests/power.Rout.save | 6 tests/speed.R | 6 vignettes/WMW.bib |only vignettes/Wilcoxon.Rnw |only vignettes/free1way.Rnw | 2337 ++++++++++++++++++++++++++-------------- 45 files changed, 4395 insertions(+), 2112 deletions(-)
More information about free1way.docreg at CRAN
Permanent link
Title: Questionnaire Analysis for Epidemiology and One Health Research
Description: Provides tools for the analysis of questionnaire and survey
data in epidemiological and One Health research. The package supports
data preparation, reliability assessment, exploratory factor analysis,
Kaiser-Meyer-Olkin assessment, parallel analysis, visualization,
reporting, and export of results using a consistent analysis workflow.
The methods are based on established approaches to psychometric and
multivariate analysis; see Kaiser (1974) <doi:10.1007/BF02291575>,
Horn (1965) <doi:10.1007/BF02289447>, and
Tabachnick and Fidell (2019, ISBN:9780134790541).
Author: Vinodh Kumar Obli Rajendran [aut, cre] ,
Keerthi Aaradhana [aut]
Maintainer: Vinodh Kumar Obli Rajendran <vinodhkumar.rajendran@gmail.com>
Diff between EpiQuestionR versions 0.1.1 dated 2026-09-10 and 0.1.2 dated 2026-11-01
DESCRIPTION | 6 - MD5 | 76 ++++++++++---------- NEWS.md | 7 + man/as.data.frame.epi_map.Rd | 6 - man/as_tibble.epi_kaiser.Rd | 4 - man/augment.epi_parallel.Rd | 2 man/autoplot.epi_map.Rd | 22 ++--- man/autoplot.epi_parallel.Rd | 6 - man/coef.epi_map.Rd | 2 man/coef.epi_parallel.Rd | 2 man/efa.Rd | 14 +-- man/export_map.Rd | 6 - man/export_map_csv.Rd | 8 +- man/export_map_excel.Rd | 6 - man/export_map_report.Rd | 8 +- man/export_parallel_tables.Rd | 2 man/glance.epi_map.Rd | 8 +- man/map_analysis_example.Rd | 8 +- man/map_eigenvalue_table.Rd | 8 +- man/map_interpretation.Rd | 4 - man/map_report_table.Rd | 2 man/map_table.Rd | 6 - man/map_test.Rd | 45 ++++++----- man/parallel_interpret.Rd | 20 ++--- man/parallel_report.Rd | 20 ++--- man/plot.epi_map.Rd | 18 ++-- man/print.epi_map.Rd | 4 - man/print.summary.epi_map.Rd | 6 - man/questionnaire_data.Rd | 10 +- man/report_map.Rd | 8 +- man/save_loading_heatmap.Rd | 4 - man/scree_plot.Rd | 2 man/sensitivity_analysis.Rd | 2 man/summary.epi_map.Rd | 12 +-- man/summary.epi_parallel.Rd | 16 ++-- man/tidy.epi_map.Rd | 6 - man/tidy.epi_parallel.Rd | 16 ++-- man/tidy.summary.epi_map.Rd | 4 - tests/testthat/test-parallel-statistical-validity.R | 9 +- 39 files changed, 213 insertions(+), 202 deletions(-)
Title: Simply Beautiful PDF Letters from Markdown
Description: Write beautiful yet customizable letters in R Markdown and
directly obtain the finished PDF. Smooth generation of PDFs is realized by
'rmarkdown', the 'pandoc-letter' template and the 'KOMA-Script' letter class.
'KOMA-Script' provides enhanced replacements for the standard 'LaTeX' classes
with emphasis on typography and versatility. 'KOMA-Script' is particularly
useful for international writers as it handles various paper formats well,
provides layouts for many common window envelope types (e.g. German, US,
French, Japanese) and lets you define your own layouts. The package comes
with a default letter layout based on 'DIN 5008B'.
Author: Robert Nuske [aut, cre] ,
Dirk Eddelbuettel [aut] ,
Aaron Wolen [aut]
Maintainer: Robert Nuske <robert.nuske@mailbox.org>
Diff between komaletter versions 0.5.0 dated 2023-02-26 and 0.5.1 dated 2026-11-01
DESCRIPTION | 16 MD5 | 44 NEWS.md | 4 R/komaletter.R | 8 README.md | 14 build/vignette.rds |binary inst/doc/intro.Rmd | 6 inst/doc/intro.html | 205 +++- inst/doc/letter_example0.pdf |binary inst/doc/letter_example1.Rmd | 2 inst/doc/letter_example1.pdf |binary inst/doc/letter_example2.pdf |binary inst/doc/letter_example3.pdf |binary inst/doc/letter_example4.pdf |binary inst/doc/parameterized_letter.R | 246 ++--- inst/doc/parameterized_letter.Rmd | 7 inst/doc/parameterized_letter.html | 458 +++++----- inst/rmarkdown/templates/pdf/resources/maintainersDelight.lco | 34 inst/rmarkdown/templates/pdf/resources/template.tex | 26 man/komaletter.Rd | 8 vignettes/intro.Rmd | 6 vignettes/letter_example1.Rmd | 2 vignettes/parameterized_letter.Rmd | 7 23 files changed, 625 insertions(+), 468 deletions(-)
Title: Health Geography Toolbox for Model-Based Analysis of Infections
Panel Data
Description: Within epidemic outbreaks, infections grow and decline differently between regions, and the velocity of spatial spread differs between countries. The swash library offers a set of model-based analyses for these topics. Spread velocity may be analysed with the Swash-Backwash Model of the Single Epidemic Wave by Cliff and Haggett (2006) <doi:10.1007/s10109-006-0027-8> and corresponding functions for bootstrap confidence intervals, country comparison, and visualization of results. Differences in epidemic growth between regions may be analysed using logistic growth models, exponential growth models, Hawkes processes and breakpoint analyses. Cluster and hotspot analyses can be conducted using neighborhood matrices. See Wieland (2020) <doi:10.18335/region.v7i2.324> for an application of some of the mentioned analysis methods. All functionalities are accessed by the class "infpan" for infections panel data defined in this package, which is built from a data.frame provided by the u [...truncated...]
Author: Thomas Wieland [aut, cre]
Maintainer: Thomas Wieland <geowieland@googlemail.com>
Diff between swash versions 3.0.2 dated 2026-10-18 and 3.0.3 dated 2026-11-01
DESCRIPTION | 10 MD5 | 60 +- NAMESPACE | 1 NEWS.md | 53 + R/config.R | 8 R/growthmodels.R | 983 +++++++++++++++++++---------------- R/helper.R | 737 +++++++++++++++++++++----- R/infpan.R | 114 ++-- R/stathelp.R | 45 + R/swash.R | 121 +++- build/partial.rdb |binary data/C19dNUTSdata.rda |binary data/COVID19Cases_geoRegion.rda |binary data/Infections.rda |binary data/K4kant20260101gf_ch2007Poly.rda |binary data/Oesterreich_Faelle.rda |binary data/RKI_Corona_counties.rda |binary data/did_fatalities_splm_coef.rda |binary inst/examples/swash_test.R | 10 man/C19dNUTSdata.Rd | 2 man/as_balanced.Rd | 10 man/binary_metrics.Rd | 6 man/breaks_growth.Rd | 6 man/exponential_growth.Rd | 8 man/hawkes_growth.Rd | 8 man/is_balanced.Rd | 11 man/logistic_growth.Rd | 8 man/swash-package.Rd | 4 man/swash.Rd | 4 man/swash_backwash.Rd | 4 tests/testthat/test-swash.R | 19 31 files changed, 1488 insertions(+), 744 deletions(-)
Title: Create Volcano Plots for Differential Gene Expression Data
Description: Creates customizable volcano plots for differential gene
expression results from RNA-seq analyses. Accepts result objects or tables
from 'DESeq2', 'edgeR', and 'limma' directly, with automatic column
detection. Labels the most significant or chosen genes, colors gene sets,
compares several contrasts side by side, offers colorblind-safe color
presets, and can produce interactive plots with 'ggiraph'. Gene tables are
rendered with 'gt' and composed with 'patchwork'.
Author: Loukas Theodosiou [aut, cre]
Maintainer: Loukas Theodosiou <theodosiou@evolbio.mpg.de>
Diff between ggvolc versions 0.1.0 dated 2026-01-16 and 0.4.0 dated 2026-11-01
DESCRIPTION | 31 +- MD5 | 41 ++- NAMESPACE | 2 NEWS.md | 117 ++++++++ R/datasets.R | 56 ++++ R/de_objects.R |only R/gene_table.R | 250 +++++++++++++++--- R/ggvolc.R | 573 ++++++++++++++++++++++++++++++++++++------ R/palettes.R |only R/utils.R |only R/zzz.R | 2 build |only data/edger_genes.RData |only data/stress_timecourse.rda |only inst |only man/de_table.Rd |only man/detect_de_source.Rd |only man/edger_genes.Rd |only man/genes_table.Rd | 82 ++++-- man/ggvolc.Rd | 199 +++++++++++++- man/ggvolc_palettes.Rd |only man/neglog10_cap.Rd |only man/select_top_genes.Rd |only man/standardize_de_columns.Rd |only man/stress_timecourse.Rd |only tests |only vignettes |only 27 files changed, 1194 insertions(+), 159 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-15 0.8.2
2024-12-04 0.8.1
2024-11-16 0.8.0
2024-09-18 0.7.0
2024-06-04 0.6.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-06-16 0.8.2
2026-02-10 0.8
2025-06-19 0.7.11
2024-02-12 0.7.8
2023-03-22 0.7.6
2023-01-06 0.7.4
2022-03-15 0.6.21
2022-01-04 0.6.18
2021-09-02 0.6.9
2021-05-11 0.6.4
2020-02-28 0.4.0
2020-01-08 0.3.0
2019-10-29 0.2.0
2019-08-01 0.1.0
Title: A Toolbox for Public Health and Epidemiology
Description: A toolbox for making R functions and capabilities more
accessible to students and professionals from Epidemiology and
Public Health related disciplines. Includes a function to report
coefficients and confidence intervals from models using robust
standard errors (when available), functions that expand 'ggplot2'
plots and functions relevant for introductory papers in Epidemiology
or Public Health. Please note that use of the
provided data sets is for educational purposes only.
Author: Josie Athens [aut, cre],
Frank Harell [ctb],
John Fox [ctb],
R-Core [ctb]
Maintainer: Josie Athens <josie.athens@gmail.com>
Diff between pubh versions 3.0.0 dated 2025-10-21 and 3.0.1 dated 2026-11-01
DESCRIPTION | 14 ++-- MD5 | 24 +++--- NAMESPACE | 1 R/display_functions.R | 51 +++++++------- R/epi_functions.R | 57 ++++------------ R/plot_functions.R | 23 +++--- build/vignette.rds |binary inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 156 +++++++++++++++++++++++++++++---------------- man/bmj.Rd | 5 - man/mhor.Rd | 18 ----- man/odds_trend.Rd | 20 +---- vignettes/introduction.Rmd | 2 13 files changed, 184 insertions(+), 189 deletions(-)
Title: Text to Speech Conversion
Description: Converts text into speech using various text-to-speech (TTS) engines and provides an unified interface for accessing their functionality.
With this package, users can easily generate audio files of spoken words, phrases, or sentences from plain text data. The package supports multiple TTS engines,
including Google's 'Cloud Text-to-Speech API', 'Amazon Polly', Microsoft's 'Cognitive Services Text to Speech REST API', the 'Speechify Text-to-Speech API', and a free TTS engine called 'Coqui TTS'.
Author: Howard Baek [aut] ,
John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between text2speech versions 1.2.0 dated 2026-09-30 and 1.2.1 dated 2026-11-01
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/tts.R | 7 ++++--- README.md | 22 +++++++++++++++------- inst/doc/coqui-tts.html | 2 +- man/tts.Rd | 7 ++++--- tests/testthat/test-tts.R | 24 ++++++++++++++++++++++++ 8 files changed, 63 insertions(+), 24 deletions(-)