Title: Automated Statistical Analysis and Table Generation for
Biomedical Research
Description: Generates publication-ready summary tables for clinical research,
supporting descriptive summaries and comparisons across two or three groups.
The package streamlines the analytical workflow by detecting variable types
and applying appropriate statistical tests (Welch t-test, Wilcoxon rank-sum,
Welch ANOVA, Kruskal-Wallis, Chi-squared, or Fisher's exact test). Results are
formatted as 'tibble' objects and can be exported to 'Word' or 'Excel' using
the 'officer', 'flextable', and 'writexl' packages. Optional pairwise
post-hoc testing for three-group comparisons (Games-Howell and Dunn's
test) is available via the 'rstatix' package. Example data are derived
from the landmark adjuvant colon cancer trial described in
Moertel et al. (1990) <doi:10.1056/NEJM199002083220602>.
Author: Joshua D. Preston [aut, cre] ,
Helen Abadiotakis [aut] ,
Ailin Tang [aut] ,
Clayton J. Rust [aut] ,
John W. O'Neill [aut] ,
Michael E. Halkos [aut] ,
Mani A. Daneshmand [aut] ,
Joshua L. Chan [aut]
Maintainer: Joshua D. Preston <joshua.preston@emory.edu>
Diff between TernTables versions 1.7.2 dated 2026-06-04 and 1.8.0 dated 2026-11-03
DESCRIPTION | 18 +- MD5 | 46 +++-- NAMESPACE | 124 ++++++++------ NEWS.md | 110 ++++++++++++ R/export_to_word.R | 188 +++++++++++++++++++++- R/imports.R | 2 R/ternB.R | 2 R/ternD.R | 135 ++++++++++++++- R/ternG.R | 357 +++++++++++++++++++++++++++++++++++------- R/ternStyle.R | 57 ++++++ R/utils_odds_ratio.R |only R/utils_stats_tidy.R |only README.md | 46 +++++ inst/doc/getting-started.R | 43 ++++- inst/doc/getting-started.Rmd | 49 +++++ inst/doc/getting-started.html | 53 +++++- man/TernTables-package.Rd | 2 man/ternD.Rd | 23 ++ man/ternG.Rd | 21 ++ man/ternStyle.Rd | 53 ++++++ man/tern_estimates.Rd |only man/tern_stats.Rd |only man/word_export.Rd | 34 +++- tests |only vignettes/getting-started.Rmd | 49 +++++ 25 files changed, 1239 insertions(+), 173 deletions(-)
Title: An Interface to the Computer Algebra System 'REDUCE'
Description: 'REDUCE' is a portable general-purpose computer algebra system supporting scalar, vector, matrix and tensor algebra, symbolic differential and integral calculus, arbitrary precision numerical calculations and output in 'LaTeX' format. 'REDUCE' is based on 'Lisp' and is available on the two dialects 'Portable Standard Lisp' ('PSL') and 'Codemist Standard Lisp' ('CSL'). The 'redcas' package provides an interface for executing arbitrary 'REDUCE' code interactively from 'R', returning output as character vectors. 'R' code and 'REDUCE' code can be interspersed. It also provides specialized functions for calling 'REDUCE' functions, for example, solving simultaneous or differential equations, differentiation and factorization of polynomials and integers returning the output as an appropriate 'R' object. A further specialized function uses 'REDUCE' features to generate 'LaTeX' output and post-processes this for direct use in 'LaTeX' documents using, e.g., 'Sweave'.
Author: Martin Gregory [aut, cre]
Maintainer: Martin Gregory <mairtin.macghreagoir@gmail.com>
Diff between redcas versions 0.1.1 dated 2024-11-08 and 0.2.1 dated 2026-11-03
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Title: ARMA-GARCH/APARCH Models with Stable, GEV and GAt Innovations
Description: Simulation, estimation and forecasting of autoregressive moving
average (ARMA) models with generalized autoregressive conditional
heteroskedasticity (GARCH) or asymmetric power ARCH (APARCH, with ARCH the
autoregressive conditional heteroskedasticity model) errors, with stable
(S0 parametrization), generalized extreme value (GEV) and generalized
asymmetric t (GAt) innovations. The innovation distribution is a pluggable
object, so user defined densities get the same fitting, simulation,
stationarity and forecasting machinery.
Author: Thiago do Rego Sousa [aut, cre],
Cira Otiniano [ctb],
Silvia Lopes [ctb],
Diethelm Wuertz [ctb, cph]
Maintainer: Thiago do Rego Sousa <thiagodoregosousa@gmail.com>
This is a re-admission after prior archival of version 1.1 dated 2015-08-20
Diff between GEVStableGarch versions 1.1 dated 2015-08-20 and 2.0.0 dated 2026-11-03
GEVStableGarch-1.1/GEVStableGarch/ChangeLog |only GEVStableGarch-1.1/GEVStableGarch/R/GEVStableGarch-armaGarchDist.R |only GEVStableGarch-1.1/GEVStableGarch/R/GEVStableGarch-filter.R |only GEVStableGarch-1.1/GEVStableGarch/R/GEVStableGarch-fit.R |only GEVStableGarch-1.1/GEVStableGarch/R/GEVStableGarch-getFormula.R |only GEVStableGarch-1.1/GEVStableGarch/R/GEVStableGarch-getOrder.R |only GEVStableGarch-1.1/GEVStableGarch/R/GEVStableGarch-getStart.R |only GEVStableGarch-1.1/GEVStableGarch/R/GEVStableGarch-onAttach.R |only GEVStableGarch-1.1/GEVStableGarch/R/GEVStableGarch-select.R |only GEVStableGarch-1.1/GEVStableGarch/R/GEVStableGarch-sim.R |only GEVStableGarch-1.1/GEVStableGarch/R/GEVStableGarch-stationarityAparch.R |only GEVStableGarch-1.1/GEVStableGarch/R/class-GEVSTABLEGARCH.R |only GEVStableGarch-1.1/GEVStableGarch/R/class-GEVSTABLEGARCHSPEC.R |only GEVStableGarch-1.1/GEVStableGarch/R/dist-gat.R |only GEVStableGarch-1.1/GEVStableGarch/R/dist-skstd.R |only GEVStableGarch-1.1/GEVStableGarch/R/gevStableGarch-spec.R |only GEVStableGarch-1.1/GEVStableGarch/R/methods-show.R |only GEVStableGarch-1.1/GEVStableGarch/data |only GEVStableGarch-1.1/GEVStableGarch/inst/doc/bibliography.txt |only GEVStableGarch-1.1/GEVStableGarch/man/class-GEVSTABLEGARCH.Rd |only GEVStableGarch-1.1/GEVStableGarch/man/class-GEVSTABLEGARCHSPEC.Rd |only GEVStableGarch-1.1/GEVStableGarch/man/data.Rd |only GEVStableGarch-1.1/GEVStableGarch/man/dist-gat.Rd |only GEVStableGarch-1.1/GEVStableGarch/man/dist-skstd.Rd |only GEVStableGarch-1.1/GEVStableGarch/man/gsFit.Rd |only GEVStableGarch-1.1/GEVStableGarch/man/gsMomentAparch.Rd |only GEVStableGarch-1.1/GEVStableGarch/man/gsSelect.Rd |only GEVStableGarch-1.1/GEVStableGarch/man/gsSim.Rd |only GEVStableGarch-1.1/GEVStableGarch/man/gsSpec.Rd |only GEVStableGarch-1.1/GEVStableGarch/man/show-methods.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/DESCRIPTION | 50 ++- GEVStableGarch-2.0.0/GEVStableGarch/MD5 | 101 ++++-- GEVStableGarch-2.0.0/GEVStableGarch/NAMESPACE | 123 ++------ GEVStableGarch-2.0.0/GEVStableGarch/NEWS.md |only GEVStableGarch-2.0.0/GEVStableGarch/R/GEVStableGarch-package.R | 32 -- GEVStableGarch-2.0.0/GEVStableGarch/R/bootstrap.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/dist.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/dist_gat.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/dist_gev.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/dist_norm.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/dist_stable.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/filter.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/fit.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/forecast.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/likelihood.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/methods.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/moments.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/params.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/sim.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/spec.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/start.R |only GEVStableGarch-2.0.0/GEVStableGarch/R/stationarity.R |only GEVStableGarch-2.0.0/GEVStableGarch/build |only GEVStableGarch-2.0.0/GEVStableGarch/inst/CITATION | 24 - GEVStableGarch-2.0.0/GEVStableGarch/inst/doc/GEVStableGarch.R |only GEVStableGarch-2.0.0/GEVStableGarch/inst/doc/GEVStableGarch.Rmd |only GEVStableGarch-2.0.0/GEVStableGarch/inst/doc/GEVStableGarch.html |only GEVStableGarch-2.0.0/GEVStableGarch/inst/doc/bgev.R |only GEVStableGarch-2.0.0/GEVStableGarch/inst/doc/bgev.Rmd |only GEVStableGarch-2.0.0/GEVStableGarch/inst/doc/bgev.html |only GEVStableGarch-2.0.0/GEVStableGarch/inst/doc/simulation-study.R |only GEVStableGarch-2.0.0/GEVStableGarch/inst/doc/simulation-study.Rmd |only GEVStableGarch-2.0.0/GEVStableGarch/inst/doc/simulation-study.html |only GEVStableGarch-2.0.0/GEVStableGarch/man/GAT.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/GEVStableGarch-package.Rd | 149 ++-------- GEVStableGarch-2.0.0/GEVStableGarch/man/gs_aparch_moment.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_bootstrap.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_check_dist.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_dist.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_fit-methods.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_fit.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_gat.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_gev.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_model.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_sim.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_spec.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_stable.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/gs_stationarity.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/man/predict.gs_fit.Rd |only GEVStableGarch-2.0.0/GEVStableGarch/tests |only GEVStableGarch-2.0.0/GEVStableGarch/vignettes |only 81 files changed, 201 insertions(+), 278 deletions(-)
More information about GEVStableGarch at CRAN
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More information about CompositionalLASSO at CRAN
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Title: Utilities for the Forest Research Institute of the State
Baden-Wuerttemberg
Description: Miscellaneous utilities, tools and helper
functions for finding and searching files on disk, searching for and
removing R objects from the workspace.
Does not import or depend on any third party package, but on core R
only (i.e. it may depend on packages with priority 'base').
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between fritools versions 4.6.0 dated 2026-02-18 and 4.7.0 dated 2026-11-03
DESCRIPTION | 8 MD5 | 232 +++++++++--------- NAMESPACE | 1 NEWS.md | 8 R/columns2numeric.R |only R/convert_umlauts_to_ascii.R | 3 R/fromto.R | 13 - R/grep_file.R | 67 +++-- R/is_convertible2numeric.R | 1 R/powers_of_ten.R | 4 R/split_code_file.R | 173 +++++++++---- R/string2words.R | 2 build/vignette.rds |binary inst/NEWS.rd | 10 inst/doc/Not_an_Introduction_to_fritools.R | 2 inst/doc/Not_an_Introduction_to_fritools.pdf |binary inst/tinytest/test_grep_file.R | 2 inst/vignettes_code/Not_an_Introduction_to_fritools.R | 2 man/bulk_read_csv.Rd | 8 man/bulk_write_csv.Rd | 8 man/call_conditionally.Rd | 4 man/call_safe.Rd | 4 man/char2factor.Rd | 6 man/check_ascii_file.Rd | 8 man/clipboard_path.Rd | 64 ++-- man/column_sums.Rd | 12 man/columns2numeric.Rd |only man/compare_vectors.Rd | 22 - man/convert_umlauts_to_ascii.Rd | 8 man/convert_umlauts_to_tex.Rd | 8 man/convert_umlauts_to_utf8.Rd | 8 man/count_groups.Rd | 12 man/csv.Rd | 10 man/csv2csv.Rd | 8 man/delete_trailing_blank_lines.Rd | 38 +- man/delete_trailing_whitespace.Rd | 38 +- man/develop_test.Rd | 56 ++-- man/escape_non_ascii.Rd | 6 man/file_copy.Rd | 64 ++-- man/file_modified_last.Rd | 56 ++-- man/file_save.Rd | 64 ++-- man/file_string.Rd | 44 +-- man/find_files.Rd | 56 ++-- man/fritools-package.Rd | 5 man/fromto.Rd | 18 - man/get_boolean_envvar.Rd | 44 +-- man/get_german_umlauts.Rd | 8 man/get_lines_between_tags.Rd | 38 +- man/get_mtime.Rd | 38 +- man/get_options.Rd | 6 man/get_package_version.Rd | 18 - man/get_r_cmd_batch_script_path.Rd | 8 man/get_rscript_script_path.Rd | 8 man/get_run_r_tests.Rd | 83 +++--- man/get_script_name.Rd | 8 man/get_script_path.Rd | 8 man/get_session_string.Rd | 8 man/get_unique_string.Rd | 38 +- man/golden_ratio.Rd | 22 - man/grep_file.Rd | 56 ++-- man/index_groups.Rd | 4 man/is_batch.Rd | 39 +-- man/is_cran.Rd | 57 ++-- man/is_difftime_less.Rd | 22 - man/is_false.Rd | 39 +-- man/is_files_current.Rd | 38 +- man/is_force.Rd | 45 +-- man/is_installed.Rd | 65 ++--- man/is_not_false.Rd | 39 +-- man/is_null_or_true.Rd | 39 +-- man/is_of_length_zero.Rd | 39 +-- man/is_path.Rd | 38 +- man/is_r_cmd_check.Rd | 57 ++-- man/is_r_package_installed.Rd | 83 +++--- man/is_running_on_fvafrcu_machines.Rd | 57 ++-- man/is_running_on_gitlab_com.Rd | 57 ++-- man/is_scalar.Rd | 39 +-- man/is_scalar_convertible2numeric.Rd | 40 +-- man/is_success.Rd | 65 ++--- man/is_true.Rd | 39 +-- man/is_valid_primary_key.Rd | 22 - man/is_version_sufficient.Rd | 57 ++-- man/is_windows.Rd | 65 ++--- man/load_internal_functions.Rd | 10 man/memory_hogs.Rd | 6 man/missing_docs.Rd | 20 - man/paths.Rd | 40 +-- man/pause.Rd | 22 - man/powers_of_ten.Rd | 45 +-- man/r_cmd_install.Rd | 22 - man/relative_difference.Rd | 16 - man/rename_package.Rd | 10 man/round_half_away_from_zero.Rd | 12 man/rownames2col.Rd | 22 - man/run_r_tests_for_known_hosts.Rd | 18 - man/runsed.Rd | 56 ++-- man/search_files.Rd | 56 ++-- man/search_rows.Rd | 18 - man/set_hash.Rd | 4 man/set_options.Rd | 6 man/set_run_r_tests.Rd | 18 - man/sloboda.Rd | 12 man/split_code_file.Rd | 38 +- man/str2num.Rd | 22 - man/string2words.Rd | 24 - man/strip_off_attributes.Rd | 22 - man/subset_sizes.Rd | 4 man/summary.filesearch.Rd | 18 - man/tapply.Rd | 22 - man/throw.Rd | 22 - man/touch.Rd | 38 +- man/un_hash.Rd | 4 man/view.Rd | 26 +- man/vim.Rd | 26 +- man/weighted_variance.Rd | 12 man/wipe_clean.Rd | 6 man/wipe_tempdir.Rd | 32 +- man/with_dir.Rd | 26 +- 118 files changed, 1745 insertions(+), 1609 deletions(-)
Title: Maximum Likelihood Estimation of Various Univariate and
Multivariate Distributions
Description: Several functions for maximum likelihood estimation of various univariate and multivariate distributions. The list includes more than 100 functions for univariate continuous and discrete distributions, distributions that lie on the real line, the positive line, interval restricted, circular distributions. Further, multivariate continuous and discrete distributions, distributions for compositional and directional data, etc. Some references include Johnson N. L., Kotz S. and Balakrishnan N. (1994). "Continuous Univariate Distributions, Volume 1" <ISBN:978-0-471-58495-7>, Johnson, Norman L. Kemp, Adrianne W. Kotz, Samuel (2005). "Univariate Discrete Distributions". <ISBN:978-0-471-71580-1> and Mardia, K. V. and Jupp, P. E. (2000). "Directional Statistics". <ISBN:978-0-471-95333-3>.
Author: Michail Tsagris [aut, cre],
Sofia Piperaki [aut],
Muhammad Imran [ctb],
Rafail Vargiakakis [aut],
Nikolaos Kontemeniotis [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between MLE versions 1.9 dated 2026-08-25 and 2.0 dated 2026-11-03
DESCRIPTION | 13 +++-- MD5 | 36 ++++++++-------- NAMESPACE | 6 ++ R/bell.mle.R | 2 R/comp.mle.R | 4 + R/hspher.mle.R | 10 ++++ man/MLE-package.Rd | 4 - man/bell.mle.Rd | 43 ++++++++++++++----- man/cens.mle.Rd | 25 ++++++++--- man/colpositive.mle.Rd | 57 +++++++++++++++---------- man/colreal.mle.Rd | 27 ++++++++---- man/comp.mle.Rd | 44 +++++++++++++------ man/disc.mle.Rd | 2 man/hspher.mle.Rd | 109 +++++++++++++++++++++++++++++-------------------- man/matrix.mle.Rd | 17 ++++--- man/mv.mle.Rd | 24 ++++++---- man/mvdisc.mle.Rd | 16 ++++--- man/positive.mle.Rd | 88 ++++++++++++++++++++++++--------------- man/truncmle.Rd | 16 ++++--- 19 files changed, 346 insertions(+), 197 deletions(-)
Title: Analyzing the Orientation of Maximum Horizontal Stress
Description: Models the direction of the maximum horizontal stress using
relative plate motion parameters. Statistical algorithms to evaluate
the modeling results compared with the observed data. Provides plots
to visualize the results. Methods described in Stephan et al. (2023)
<doi:10.1038/s41598-023-42433-2> and Wdowinski (1998)
<doi:10.1016/S0079-1946(98)00091-3>.
Author: Tobias Stephan [aut, cre]
Maintainer: Tobias Stephan <tobias.stephan1@yahoo.com>
Diff between tectonicr versions 0.4.9 dated 2026-08-29 and 0.4.10 dated 2026-11-03
DESCRIPTION | 13 MD5 | 244 ++--- NAMESPACE | 501 +++++----- NEWS.md | 64 + R/nuvel1_plates.R | 42 R/plates.R | 88 - R/rose.R | 520 +++++++--- R/stat_tests.R | 1662 ++++++++++++++++++++++++----------- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/datasets.R | 412 ++++---- inst/doc/datasets.Rmd | 772 ++++++++-------- inst/doc/datasets.html | 1450 +++++++++++++++--------------- inst/doc/interpolation.R | 146 +-- inst/doc/interpolation.html | 960 ++++++++++---------- inst/doc/spatial.R | 286 +++--- inst/doc/spatial.Rmd | 454 ++++----- inst/doc/spatial.html | 1166 ++++++++++++------------ inst/doc/statistics.R | 196 ++-- inst/doc/statistics.html | 1498 +++++++++++++++---------------- inst/doc/stress_trajectories.R | 300 +++--- inst/doc/stress_trajectories.html | 1182 ++++++++++++------------ inst/doc/tectonicr.R | 98 +- inst/doc/tectonicr.html | 1164 ++++++++++++------------ man/PoR2Geo_azimuth.Rd | 88 - man/PoR_crs.Rd | 64 - man/PoR_map.Rd | 110 +- man/PoR_stress2grid.Rd | 188 +-- man/PositionCenterSpoke.Rd | 36 man/abs_vel.Rd | 58 - man/angle-conversion.Rd | 56 - man/angle_vectors.Rd | 46 man/ar_test.Rd | 29 man/axes.Rd | 88 - man/circle_stats.Rd | 200 ++-- man/circular_plot.Rd | 38 man/circular_qqplot.Rd | 128 +- man/circular_sd_error.Rd | 124 +- man/confidence.Rd | 148 +-- man/coordinate_mod.Rd | 52 - man/coordinates.Rd | 76 - man/coordinates2.Rd | 76 - man/cpm_models.Rd | 162 +-- man/cunif.Rd | 5 man/deviation_norm.Rd | 58 - man/deviation_shmax.Rd | 124 +- man/dispersion.Rd | 160 +-- man/dist_greatcircle.Rd | 130 +- man/distance_binned_stats.Rd | 2 man/distance_from_pb.Rd | 140 +- man/distance_mod.Rd | 38 man/dummy.Rd | 64 - man/earth_radius.Rd | 28 man/equal_kappa_test.Rd |only man/equivalent_rotation.Rd | 84 - man/euler_pole.Rd | 68 - man/geom_azimuth.Rd | 184 +-- man/geom_azimuthpoint.Rd | 196 ++-- man/get_azimuth.Rd | 80 - man/get_distance.Rd | 44 man/get_projected_pb_strike.Rd | 44 man/get_relrot.Rd | 44 man/hodges_ajne_test.Rd |only man/import_WSM.Rd | 2 man/is.euler.Rd | 48 - man/kuiper_test.Rd | 163 +-- man/line_azimuth.Rd | 82 - man/mean_SC.Rd | 58 - man/mean_resultant_length.Rd | 80 - man/model_shmax.Rd | 126 +- man/norm_chisq.Rd | 144 +-- man/nuvel1.Rd | 68 - man/nuvel1_plates.Rd | 52 - man/ort-eigen.Rd | 164 +-- man/ortensor2d.Rd | 104 +- man/pb2002.Rd | 66 - man/plates.Rd | 52 - man/plot_density.Rd | 281 ++--- man/plot_points.Rd | 184 +-- man/por_transformation_df.Rd | 62 - man/por_transformation_quat.Rd | 46 man/por_transformation_sf.Rd | 64 - man/prd_err.Rd | 76 - man/projected_pb_strike.Rd | 108 +- man/quick_plot.Rd | 142 +- man/rao_spacing_test.Rd |only man/raster_transformation.Rd | 52 - man/rayleigh-test.Rd | 44 man/relative_rotation.Rd | 76 - man/rolling_test.Rd | 327 +++--- man/rolling_test_dist.Rd | 272 ++--- man/rose.Rd | 274 ++--- man/rose_bw.Rd | 55 - man/rose_geom.Rd | 97 +- man/rose_stats.Rd | 168 +-- man/rotate_lines.Rd | 44 man/shortest_distance_to_line.Rd | 2 man/spec_atan.Rd | 52 - man/spherical_angle.Rd | 118 +- man/stress2grid.Rd | 380 ++++---- man/stress_analysis.Rd | 144 +-- man/stress_colors.Rd | 34 man/stress_data.Rd | 150 +-- man/stress_paths.Rd | 142 +- man/superimposed_shmax.Rd | 96 +- man/tectonicr.Rd | 78 - man/tectonicr.colors.Rd | 92 - man/trigon.Rd | 86 - man/uniform_scores_test.Rd |only man/vcross.Rd | 40 man/vm_qqplot.Rd | 138 +- man/vonmises.Rd | 130 +- man/walraff_test.Rd |only man/watson_test.Rd | 205 ++-- man/watson_two_sample.Rd | 57 - man/watson_wheeler_test_perm.Rd | 46 man/watson_williams_test.Rd |only man/wcauchy.Rd | 2 man/weighted-rayleigh-test.Rd | 54 - man/wnorm.Rd | 2 vignettes/children/chunk_options.txt | 104 +- vignettes/datasets.Rmd | 772 ++++++++-------- vignettes/install_extras | 2 vignettes/spatial.Rmd | 454 ++++----- vignettes/tectonicr_references.bib | 152 +-- 126 files changed, 12258 insertions(+), 11335 deletions(-)
Title: Actuarial Functions for Non-Life Insurance Modelling
Description: Assists actuaries and other insurance modellers in pricing,
reserving and capital modelling for non-life insurance and
reinsurance modelling. Provides functions that help model
excess levels, capping and pure Incurred but not reported
claims (pure IBNR).
Includes capped mean, exposure curves and increased limit
factor curves (ILFs) for LogNormal, Gamma, Pareto, Sliced
LogNormal-Pareto and Sliced Gamma-Pareto distributions.
Includes mean, probability density function (pdf), cumulative
probability function (cdf) and inverse cumulative probability
function for Sliced LogNormal-Pareto and Sliced Gamma-Pareto
distributions.
Includes calculating pure IBNR exposure with LogNormal and
Gamma distribution for reporting delay.
Includes three 'shiny' tools: a claims simulator with reinsurance
structures, a generalised linear model fitting tool, and a claims
frequency and severity distribution fitting tool.
Methods used in the package refer to
Free for All by Yiannis Parizas (2023) <https://www. [...truncated...]
Author: Yiannis Parizas [aut, cre]
Maintainer: Yiannis Parizas <yiannis.parizas@gmail.com>
Diff between NetSimR versions 0.3.2 dated 2026-09-30 and 0.3.3 dated 2026-11-03
DESCRIPTION | 8 MD5 | 27 - NEWS | 13 R/ShinySimulatorUI.R | 552 +++++++++++++++---------------- R/distribution_fitting_tool_UI.R | 622 +++++++++++++++++------------------ build/vignette.rds |binary inst/WORDLIST | 10 inst/doc/CappedMean.html | 8 inst/doc/PureIBNR.html | 10 inst/doc/SimulateClaims.html | 4 inst/doc/SlicedDistributions.html | 22 - man/distribution_fitting_tool_UI.Rd | 14 man/shiny_simulator_ui.Rd | 10 tests/testthat/test-ui-portability.R |only tests/testthat/test-validation.R | 2 15 files changed, 671 insertions(+), 631 deletions(-)
Title: Various Methods for the Goodness-of-Fit Problem in D>1
Dimensions
Description: Provides multivariate goodness-of-fit testing with a common
interface for several test statistics. Null models may be simple or include
parameter estimation, with p-values obtained by parametric bootstrap
simulation. The function gof_test_adjusted_pvalue() combines several tests
and computes a p-value adjusted for simultaneous inference. The function
gof_power() estimates test power. The functions hybrid_test() and
hybrid_power() use Monte Carlo samples under the null together with
two-sample procedures. The function run.studies() supports systematic power
comparisons of user-supplied and included methods across case studies. See
the included vignettes for method details and references.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between MDgof versions 1.2.1 dated 2026-10-14 and 1.3.0 dated 2026-11-03
MDgof-1.2.1/MDgof/inst/legacy-tests |only MDgof-1.3.0/MDgof/DESCRIPTION | 8 MDgof-1.3.0/MDgof/MD5 | 80 - MDgof-1.3.0/MDgof/NEWS.md | 5 MDgof-1.3.0/MDgof/R/RcppExports.R | 13 MDgof-1.3.0/MDgof/R/case.studies.cont.D5.R | 23 MDgof-1.3.0/MDgof/R/case.studies.cont.R | 21 MDgof-1.3.0/MDgof/R/case.studies.disc.R | 38 MDgof-1.3.0/MDgof/R/case.studies.est.R | 7 MDgof-1.3.0/MDgof/R/chisq2D_test.R | 618 ++++++---- MDgof-1.3.0/MDgof/R/gof_power.R | 15 MDgof-1.3.0/MDgof/R/gof_test.R | 3 MDgof-1.3.0/MDgof/R/gof_test_adjusted_pvalue.R | 26 MDgof-1.3.0/MDgof/R/hybrid_power.R | 45 MDgof-1.3.0/MDgof/R/run.studies.R | 47 MDgof-1.3.0/MDgof/data/power_studies_cont_D5_hybrid_results.rda |binary MDgof-1.3.0/MDgof/data/power_studies_cont_D5_results.rda |binary MDgof-1.3.0/MDgof/data/power_studies_cont_est_results.rda |binary MDgof-1.3.0/MDgof/data/power_studies_cont_hybrid_results.rda |binary MDgof-1.3.0/MDgof/data/power_studies_cont_nMC5_D5_hybrid_results.rda |binary MDgof-1.3.0/MDgof/data/power_studies_cont_nMC5_hybrid_results.rda |binary MDgof-1.3.0/MDgof/data/power_studies_cont_results.rda |binary MDgof-1.3.0/MDgof/data/power_studies_disc_est_results.rda |binary MDgof-1.3.0/MDgof/data/power_studies_disc_hybrid_results.rda |binary MDgof-1.3.0/MDgof/data/power_studies_disc_nMC5_hybrid_results.rda |binary MDgof-1.3.0/MDgof/data/power_studies_disc_results.rda |binary MDgof-1.3.0/MDgof/inst/doc/MDgof-Case-Studies.html | 46 MDgof-1.3.0/MDgof/inst/doc/MDgof-Methods.Rmd | 17 MDgof-1.3.0/MDgof/inst/doc/MDgof-Methods.html | 54 MDgof-1.3.0/MDgof/man/chi_cont_test.Rd | 17 MDgof-1.3.0/MDgof/man/chi_disc_test.Rd | 13 MDgof-1.3.0/MDgof/man/hybrid_power.Rd | 6 MDgof-1.3.0/MDgof/man/perm_pvalue.Rd |only MDgof-1.3.0/MDgof/man/rosenblattC.Rd | 15 MDgof-1.3.0/MDgof/man/run.studies.Rd | 10 MDgof-1.3.0/MDgof/src/ksd.cpp | 6 MDgof-1.3.0/MDgof/src/powerC.cpp | 42 MDgof-1.3.0/MDgof/src/rosenblattC.cpp | 181 +- MDgof-1.3.0/MDgof/src/testC.cpp | 12 MDgof-1.3.0/MDgof/tests/testthat/test-minimum-chisquare.R |only MDgof-1.3.0/MDgof/vignettes/MDgof-Methods.Rmd | 17 41 files changed, 899 insertions(+), 486 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-28 0.12
2018-11-19 0.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-16 0.4.1
2023-09-07 0.3.1
2023-03-01 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-06 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-11 1.1
2016-09-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-15 1.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-31 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-18 0.4.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-19 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-31 1.6.3
2020-01-08 1.6.1
2017-01-05 1.4
2016-09-21 1.3
2015-06-22 1.2
2015-02-03 1.1
2014-12-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-17 0.9.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-09-01 1.5.8
2022-08-25 1.5.5
2022-06-06 1.5.4
2021-09-21 1.5.2
2021-02-23 1.5.1
2021-01-08 1.5.0
2020-09-03 1.4.9
2020-07-26 1.4.8
2020-05-06 1.4.7
2020-04-05 1.4.6
2019-12-06 1.4.5
2019-06-19 1.4.4
2019-05-27 1.4.3
2019-01-15 1.4.2
2018-11-23 1.4.1
2018-09-19 1.4.0
2018-08-27 1.3.9
2018-07-29 1.3.8
2018-07-26 1.3.7
2018-06-25 1.3.5
2018-05-24 1.3.4
2018-03-30 1.3.3
2018-02-13 1.3.2
2017-11-30 1.3.1
2017-11-16 1.3.0
2017-11-15 1.2.5
2017-10-10 1.2
2017-10-09 1.1.5
2017-10-07 1.1.1
2017-10-06 1.1
2017-09-04 1.0.0
2017-03-26 0.9.9
2017-02-20 0.9.8
2016-12-20 0.9.7
2016-11-02 0.9.5
2016-08-05 0.9.4
2016-07-10 0.9.3
2016-07-05 0.9.2
2016-06-13 0.8.8
2016-05-23 0.8.7
2016-04-26 0.8.5
2016-03-22 0.8
2016-03-04 0.7
2015-09-29 0.5
2015-07-28 0.4.3
2015-07-27 0.4.2
2015-07-09 0.4.1
2015-07-01 0.4
2015-05-25 0.3.1
2015-02-12 0.3
2014-08-04 0.2.1
2014-08-01 0.2
2014-05-12 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-08 0.2.2
2018-12-27 0.2.1
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2020-10-22 0.1.0
Title: Joint Longitudinal and Survival Model for Big Data
Description: Provides analysis tools for big data where the sample size is very large. It offers
a suite of functions for fitting and predicting joint models, which allow for the simultaneous
analysis of longitudinal and time-to-event data. This statistical methodology is particularly
useful in medical research where there is often interest in understanding the relationship
between a longitudinal biomarker and a clinical outcome, such as survival or disease progression.
This can be particularly useful in a clinical setting where it is important to be able to predict
how a patient's health status may change over time. Overall, this package provides a
comprehensive set of tools for joint modeling of BIG data obtained as survival and
longitudinal outcomes with both Bayesian and non-Bayesian approaches. Its versatility
and flexibility make it a valuable resource for researchers in many different fields,
particularly in the medical and health sciences.
Author: Atanu Bhattacharjee [aut, cre, ctb],
Bhrigu Kumar Rajbongshi [aut, ctb],
Gajendra K Vishwakarma [aut, ctb]
Maintainer: Atanu Bhattacharjee <atanustat@gmail.com>
Diff between jmBIG versions 0.1.3 dated 2025-01-19 and 0.1.4 dated 2026-11-03
DESCRIPTION | 11 MD5 | 8 NAMESPACE | 2 R/prediction.R | 930 ++++++++++++++++++++++++++--------------------------- man/survfitJMCS.Rd | 2 5 files changed, 477 insertions(+), 476 deletions(-)
Title: 'rOpenSci' Software Review 'Roclets'
Description: Companion package to 'rOpenSci' statistical software review
project ('rOpenSci' authors, 2021; <doi:10.5281/zenodo.5556756>), to
facilitate documenting software compliance with statistical standards
using 'Roxygen2' 'roclets'.
Author: Maelle Salmon [cre, aut]
Maintainer: Maelle Salmon <reviewtools@ropensci.org>
Diff between srr versions 1.0.0 dated 2026-06-23 and 1.1.0 dated 2026-11-03
srr-1.0.0/srr/inst/doc/review-tools.Rmd |only srr-1.0.0/srr/inst/doc/review-tools.html |only srr-1.0.0/srr/vignettes/review-tools.Rmd |only srr-1.0.0/srr/vignettes/review-tools.md |only srr-1.0.0/srr/vignettes/srr-stats.md |only srr-1.1.0/srr/DESCRIPTION | 24 +++--- srr-1.1.0/srr/MD5 | 34 +++----- srr-1.1.0/srr/NEWS.md |only srr-1.1.0/srr/R/categories.R | 7 + srr-1.1.0/srr/R/checklist.R | 8 +- srr-1.1.0/srr/R/dl-standards.R | 51 ++++++++++++- srr-1.1.0/srr/R/pre-submit.R | 2 srr-1.1.0/srr/R/report.R | 9 +- srr-1.1.0/srr/R/roclet.R | 6 - srr-1.1.0/srr/R/utils.R | 33 ++++++++ srr-1.1.0/srr/README.md | 96 +++++++++++++++++-------- srr-1.1.0/srr/build/partial.rdb |binary srr-1.1.0/srr/build/vignette.rds |binary srr-1.1.0/srr/inst/doc/srr-stats.html | 8 +- srr-1.1.0/srr/tests/testthat/test-categories.R | 35 +++++++++ srr-1.1.0/srr/tests/testthat/test-report.R | 17 ++++ 21 files changed, 248 insertions(+), 82 deletions(-)
Title: Wrapper for 'MUMPS' Library
Description: Some basic features of 'MUMPS' (Multifrontal Massively Parallel
sparse direct Solver) are wrapped in a class whose methods can be used
for sequentially solving a sparse linear system (symmetric or not)
with one or many right hand sides (dense or sparse).
There is a possibility to do separately symbolic analysis,
LU (or LDL^t) factorization and system solving.
The ordering libraries 'PORD' and 'METIS' are included.
'MUMPS' method was first described in Amestoy et al. (2001) <doi:10.1137/S0895479899358194>
and Amestoy et al. (2006) <doi:10.1016/j.parco.2005.07.004>.
Author: Serguei Sokol [aut],
Balasubramanian Narasimhan [ctb, cph, cre] ,
Emmanuel Agullo [ctb] ,
Patrick Amestoy [ctb, cph] ,
Maurice Bremond [ctb] ,
Alfredo Buttari [ctb] ,
Philippe Combes [ctb] ,
Marie Durand [ctb] ,
Aurelia Fevre [ctb] ,
Matthieu Gerest [...truncated...]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between rmumps versions 5.2.1-43 dated 2026-05-28 and 5.9.1-1 dated 2026-11-03
rmumps-5.2.1-43/rmumps/R/inc_os.R |only rmumps-5.2.1-43/rmumps/inst/include/dmumps_c.h |only rmumps-5.2.1-43/rmumps/inst/include/dmumps_root.h |only rmumps-5.2.1-43/rmumps/inst/include/dmumps_struc.h |only rmumps-5.2.1-43/rmumps/inst/include/mumps_c_types.h |only rmumps-5.2.1-43/rmumps/inst/include/mumps_compat.h |only rmumps-5.2.1-43/rmumps/inst/include/rcpp_errwarn.h |only rmumps-5.2.1-43/rmumps/src/Makevars.omp |only rmumps-5.2.1-43/rmumps/src/Makevars.seq |only rmumps-5.2.1-43/rmumps/src/init.c |only rmumps-5.2.1-43/rmumps/src/lib |only rmumps-5.2.1-43/rmumps/src/wrap_r.c |only rmumps-5.9.1-1/rmumps/DESCRIPTION | 228 +- rmumps-5.9.1-1/rmumps/MD5 | 1400 +++------------- rmumps-5.9.1-1/rmumps/NAMESPACE | 2 rmumps-5.9.1-1/rmumps/NEWS | 81 rmumps-5.9.1-1/rmumps/R/RcppExports.R | 136 + rmumps-5.9.1-1/rmumps/R/methods.R | 30 rmumps-5.9.1-1/rmumps/README.md | 4 rmumps-5.9.1-1/rmumps/cleanup | 14 rmumps-5.9.1-1/rmumps/inst/COPYRIGHTS | 119 - rmumps-5.9.1-1/rmumps/inst/include/rmumps |only rmumps-5.9.1-1/rmumps/inst/include/rmumps.h | 96 - rmumps-5.9.1-1/rmumps/inst/include/rmumps_RcppExports.h | 309 +++ rmumps-5.9.1-1/rmumps/man/Rmumps.Rd | 11 rmumps-5.9.1-1/rmumps/man/Rmumps__del_ptr.Rd | 4 rmumps-5.9.1-1/rmumps/man/Rmumps__pointer_api.Rd |only rmumps-5.9.1-1/rmumps/man/Rmumps__set_mat_ptr.Rd | 4 rmumps-5.9.1-1/rmumps/man/Rmumps__set_permutation.Rd | 4 rmumps-5.9.1-1/rmumps/man/Rmumps__solveptr.Rd | 4 rmumps-5.9.1-1/rmumps/man/rmumps-package.Rd | 13 rmumps-5.9.1-1/rmumps/man/solvet.Rd |only rmumps-5.9.1-1/rmumps/src/Makevars | 44 rmumps-5.9.1-1/rmumps/src/Makevars.vendor |only rmumps-5.9.1-1/rmumps/src/RcppExports.cpp | 590 ++++++ rmumps-5.9.1-1/rmumps/src/get_cnst.cpp | 3 rmumps-5.9.1-1/rmumps/src/rmumps-win.def |only rmumps-5.9.1-1/rmumps/src/rmumps_abi_adapter.h |only rmumps-5.9.1-1/rmumps/src/rmumps_abi_adapters.c |only rmumps-5.9.1-1/rmumps/src/rmumps_api.c |only rmumps-5.9.1-1/rmumps/src/rmumps_internal.h |only rmumps-5.9.1-1/rmumps/src/rmumps_module.cpp | 352 +++- rmumps-5.9.1-1/rmumps/src/rmumps_testhook.cpp |only rmumps-5.9.1-1/rmumps/src/shim |only rmumps-5.9.1-1/rmumps/src/vendor |only rmumps-5.9.1-1/rmumps/tests/testthat/fixtures |only rmumps-5.9.1-1/rmumps/tests/testthat/test_api.R |only rmumps-5.9.1-1/rmumps/tests/testthat/test_golden.R |only 48 files changed, 2071 insertions(+), 1377 deletions(-)
Title: Regression Sensitivity Analysis for Omitted Variable Bias
Description: Sensitivity analysis for linear regression coefficients in the
presence of omitted variables. Implements the identified-set and
breakdown-point analyses of Diegert, Masten and Poirier (2026)
<doi:10.48550/arXiv.2206.02303>, Oster (2019)
<doi:10.1080/07350015.2016.1227711> and Masten and Poirier (2026)
<doi:10.1257/aer.20230242>. Provides bounds on regression
coefficients under relaxations of the no-omitted-variables
assumption indexed by interpretable sensitivity parameters, the
breakdown point of a hypothesis about the long-regression
coefficient, and plotting helpers.
Author: Mike Nguyen [aut, cre, cph]
Maintainer: Mike Nguyen <nguyennghia1301@gmail.com>
Diff between regsensitivity versions 0.2.0 dated 2026-10-20 and 0.3.0 dated 2026-11-03
DESCRIPTION | 6 MD5 | 83 ++++----- NAMESPACE | 25 ++ NEWS.md | 62 ++++++ R/accessors.R |only R/api.R | 43 ++++ R/bootstrap.R | 209 +++++++++++++++++++++-- R/dgp.R | 57 ++++-- R/display.R | 265 ++++++++++++++++++++++++----- R/multi.R | 85 +++++++++ R/plot.R | 32 +++ R/zzz.R | 4 README.md | 2 inst/casestudies/case2_simulation.R | 2 inst/doc/dmp2022-replication.R | 24 +- inst/doc/dmp2022-replication.Rmd | 26 +- inst/doc/dmp2022-replication.html | 24 +- inst/doc/interpreting-results.R | 36 ++-- inst/doc/interpreting-results.Rmd | 62 +++--- inst/doc/interpreting-results.html | 98 +++++----- inst/doc/mp2022-stylized.R | 14 - inst/doc/mp2022-stylized.Rmd | 24 +- inst/doc/mp2022-stylized.html | 18 +- inst/doc/regsensitivity.R | 8 inst/doc/regsensitivity.Rmd | 8 inst/doc/regsensitivity.html | 324 +++++++++++++++--------------------- inst/doc/stata-migration.R | 20 +- inst/doc/stata-migration.Rmd | 20 +- inst/doc/stata-migration.html | 180 ++++++++------------ inst/replication/dmp2022.R | 4 man/regsen_boot-methods.Rd |only man/regsen_multi.Rd | 26 ++ man/regsen_summary.Rd | 27 ++- man/regsensitivity-accessors.Rd |only man/regsensitivity-display.Rd |only man/regsensitivity-package.Rd | 2 man/regsensitivity.Rd | 17 + tests/testthat/test-api.R | 27 ++- tests/testthat/test-methods.R |only tests/testthat/test-parallel.R | 29 ++- vignettes/dmp2022-replication.Rmd | 26 +- vignettes/interpreting-results.Rmd | 62 +++--- vignettes/mp2022-stylized.Rmd | 24 +- vignettes/regsensitivity.Rmd | 8 vignettes/stata-migration.Rmd | 20 +- 45 files changed, 1343 insertions(+), 690 deletions(-)
More information about regsensitivity at CRAN
Permanent link
Title: Data Visualisation on 'Lifemap' Tree
Description: Allow to visualise data on the NCBI phylogenetic tree as presented in Lifemap <https://lifemap.cnrs.fr/>. It takes as input a dataframe with at least a "taxid" column containing NCBI format TaxIds and allows to draw multiple layers with different visualisation tools.
Author: Cassandra Bompard [aut],
Damien M. de Vienne [aut] ,
Julien Barnier [aut] ,
Aurelie Siberchicot [ctb, cre]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between LifemapR versions 1.1.6 dated 2025-08-27 and 1.1.7 dated 2026-11-03
DESCRIPTION |only MD5 | 10 +- NAMESPACE | 95 +++++++++++--------- R/display_map.R | 209 +++++++++++++++++++++++++++++++++++++++++----- README.md |only build |only inst/WORDLIST |only inst/doc/runLifemapR.html | 15 +-- man |only 9 files changed, 253 insertions(+), 76 deletions(-)
Title: Functional Programming with Parallelism and Progress Tracking
Description: Provides functional tools such as fmap(), fwalk(), and fapply()
to iterate over vectors, data frames, or grouped data with optional parallelism
and real-time progress tracking. Progress updates reflect completed tasks
across sequential, multicore, and cluster-backed execution. A uniform error
policy keeps a run going when individual tasks fail, and optional per-task
L'Ecuyer-CMRG random-number streams make parallel Monte Carlo work
reproducible regardless of the number of cores. Designed for readable and
reproducible workflows, including simulation and benchmarking.
Author: Imad El Badisy [aut, cre]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
Diff between functionals versions 0.5.1 dated 2026-08-21 and 0.6.0 dated 2026-11-03
DESCRIPTION | 23 +++-- MD5 | 66 +++++++++------ NEWS.md | 34 +++++++ R/fapply.R | 46 ++++++++++ R/fcv.R | 15 +++ R/floop.R | 42 +++++---- R/fmap.R | 11 ++ R/fmapc.R | 10 +- R/fmapg.R | 10 +- R/fmapn.R | 11 ++ R/fmapr.R | 10 +- R/frepeat.R | 20 +++- R/fwalk.R | 12 ++ R/helpers.R | 163 ++++++++++++++++++++++++++++++++++++++ README.md | 66 ++++++++------- build |only inst |only man/fapply.Rd | 28 ++++++ man/fcv.Rd | 24 +++++ man/floop.Rd | 22 ++--- man/fmap.Rd | 19 ++++ man/fmapc.Rd | 18 +++- man/fmapg.Rd | 19 ++++ man/fmapn.Rd | 18 +++- man/fmapr.Rd | 18 +++- man/frepeat.Rd | 12 ++ man/functionals-package.Rd | 2 man/fwalk.Rd | 20 ++++ tests/testthat/test-floop.R | 12 ++ tests/testthat/test-norm-ncores.R |only tests/testthat/test-on-error.R |only tests/testthat/test-seed.R |only vignettes |only 33 files changed, 628 insertions(+), 123 deletions(-)
Title: Fast Histogram Gradient Boosting for Regression, Classification,
and Survival Analysis
Description: A fast gradient boosting machine covering four task types with
one interface: regression (squared error), binary and multiclass
classification (logistic and one-vs-rest), and right-censored survival
analysis via Cox (Breslow ties), accelerated failure time (normal
location-scale), or piecewise-exponential objectives, and competing
risks via Fine-Gray subdistribution hazards, cause-specific hazards, or
coupled cause-specific hazards, following 'CoxBoost' (Binder et al.
2009) <doi:10.1093/bioinformatics/btp088>. Provides
native missing-value routing, baseline-hazard estimation and
survival-probability prediction for the survival objectives, and
deterministic multi-threaded training via 'RcppParallel'. Methods are
described in Friedman (2001) <doi:10.1214/aos/1013203451>.
Author: Imad El Badisy [aut, cre]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
Diff between fastgbm versions 0.6.1 dated 2026-09-01 and 0.7.0 dated 2026-11-03
DESCRIPTION | 15 MD5 | 36 - NAMESPACE | 2 NEWS.md | 47 + R/comrisk.R |only R/fastgbm.R | 39 + R/importance.R | 2 R/utils.R | 5 README.md | 62 ++ inst/benchmarks/comrisk-benchmark-results.csv |only inst/benchmarks/comrisk-benchmark-summary.csv |only inst/benchmarks/comrisk-session-info.txt |only inst/benchmarks/run-benchmark-comrisk.R |only inst/doc/getting-started.html | 24 inst/doc/regression.html | 6 inst/doc/survival.html | 26 man/fastgbm-package.Rd | 2 man/fastgbm.Rd | 18 man/predict.fastgbm_comrisk.Rd |only man/print.fastgbm_comrisk.Rd |only src/fastgbm.cpp | 691 ++++++++++++++++++++++++-- src/init.c | 18 tests/testthat/test-comrisk.R |only 23 files changed, 890 insertions(+), 103 deletions(-)
Title: Machine Learning Model Explainer
Description: It enables detailed interpretation of complex classification and regression models through Shapley analysis including data-driven characterization of subgroups of individuals. Furthermore, it facilitates multi-measure model evaluation, model fairness, and decision curve analysis. Additionally, it offers enhanced visualizations with interactive elements.
Author: Ramtin Zargari Marandi [aut, cre]
Maintainer: Ramtin Zargari Marandi <ramtin.zargari@gmail.com>
Diff between explainer versions 1.0.2 dated 2024-09-30 and 1.0.3 dated 2026-11-03
explainer-1.0.2/explainer/man/ShapPartialPlot.Rd |only explainer-1.0.2/explainer/man/ePerformance.Rd |only explainer-1.0.3/explainer/DESCRIPTION | 18 explainer-1.0.3/explainer/MD5 | 43 explainer-1.0.3/explainer/NEWS.md |only explainer-1.0.3/explainer/R/SHAPclust.R | 557 ++++---- explainer-1.0.3/explainer/R/ShapFeaturePlot.R | 164 +- explainer-1.0.3/explainer/R/eCM_plot.R | 256 +-- explainer-1.0.3/explainer/R/eDecisionCurve.R | 306 ++-- explainer-1.0.3/explainer/R/eFairness.R | 312 ++-- explainer-1.0.3/explainer/R/eROC_plot.R | 306 ++-- explainer-1.0.3/explainer/R/eSHAP_plot.R | 526 +++---- explainer-1.0.3/explainer/R/eSHAP_plot_reg.R | 426 +++--- explainer-1.0.3/explainer/R/eperformance.R | 600 ++++---- explainer-1.0.3/explainer/R/shapPartialPlot.R | 164 +- explainer-1.0.3/explainer/README.md | 2 explainer-1.0.3/explainer/build/vignette.rds |binary explainer-1.0.3/explainer/inst/doc/explainer-vignette.R | 18 explainer-1.0.3/explainer/inst/doc/explainer-vignette.Rmd | 20 explainer-1.0.3/explainer/inst/doc/explainer-vignette.html | 894 ++++++------- explainer-1.0.3/explainer/man/eCM_plot.Rd | 4 explainer-1.0.3/explainer/man/eperformance.Rd |only explainer-1.0.3/explainer/man/explainer-package.Rd | 2 explainer-1.0.3/explainer/man/shapPartialPlot.Rd |only explainer-1.0.3/explainer/vignettes/explainer-vignette.Rmd | 20 25 files changed, 2355 insertions(+), 2283 deletions(-)
Title: Access UK Housing Data from Land Registry, Planning, and 'ONS'
Description: Fetch UK housing data from official sources. Access the UK House
Price Index and Price Paid Data from 'HM Land Registry'
<https://landregistry.data.gov.uk/>, planning application, brownfield
land, and local plan data from 'planning.data.gov.uk'
<https://www.planning.data.gov.uk/>, and the Price Index of Private Rents
from the 'Office for National Statistics'. Data covers all 441 UK local
authorities from 1995 to the present. Functions accept flexible filters
(postcode, local authority, property type, date range) and return tidy
data frames. Downloaded data is cached locally for subsequent calls.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between ukhousing versions 0.1.0 dated 2026-04-21 and 0.2.0 dated 2026-11-03
ukhousing-0.1.0/ukhousing/man/ukh_epc_bulk.Rd |only ukhousing-0.1.0/ukhousing/man/ukh_epc_certificate.Rd |only ukhousing-0.1.0/ukhousing/man/ukh_epc_recommendations_summary.Rd |only ukhousing-0.1.0/ukhousing/man/ukh_epc_search.Rd |only ukhousing-0.1.0/ukhousing/man/ukh_epc_set_key.Rd |only ukhousing-0.1.0/ukhousing/man/ukh_epc_summary.Rd |only ukhousing-0.1.0/ukhousing/tests/testthat/test-epc-types.R |only ukhousing-0.2.0/ukhousing/DESCRIPTION | 22 ukhousing-0.2.0/ukhousing/MD5 | 76 - ukhousing-0.2.0/ukhousing/NAMESPACE | 22 ukhousing-0.2.0/ukhousing/NEWS.md | 78 + ukhousing-0.2.0/ukhousing/R/cache.R | 8 ukhousing-0.2.0/ukhousing/R/epc.R | 521 ---------- ukhousing-0.2.0/ukhousing/R/hpi.R | 53 - ukhousing-0.2.0/ukhousing/R/pipr.R | 177 ++- ukhousing-0.2.0/ukhousing/R/planning.R | 12 ukhousing-0.2.0/ukhousing/R/ppd.R | 75 + ukhousing-0.2.0/ukhousing/R/sparql.R | 50 ukhousing-0.2.0/ukhousing/R/utils.R | 19 ukhousing-0.2.0/ukhousing/man/ukh_cache_info.Rd | 9 ukhousing-0.2.0/ukhousing/man/ukh_clear_cache.Rd | 9 ukhousing-0.2.0/ukhousing/man/ukh_hpi.Rd | 22 ukhousing-0.2.0/ukhousing/man/ukh_hpi_compare.Rd | 22 ukhousing-0.2.0/ukhousing/man/ukh_pipr.Rd | 44 ukhousing-0.2.0/ukhousing/man/ukh_planning.Rd | 10 ukhousing-0.2.0/ukhousing/man/ukh_planning_datasets.Rd | 10 ukhousing-0.2.0/ukhousing/man/ukh_ppd.Rd | 29 ukhousing-0.2.0/ukhousing/man/ukh_ppd_address.Rd | 18 ukhousing-0.2.0/ukhousing/man/ukh_ppd_bulk.Rd | 16 ukhousing-0.2.0/ukhousing/man/ukh_ppd_summary.Rd | 20 ukhousing-0.2.0/ukhousing/man/ukh_ppd_transaction.Rd | 18 ukhousing-0.2.0/ukhousing/man/ukh_ppd_years.Rd | 20 ukhousing-0.2.0/ukhousing/man/ukh_regions.Rd | 4 ukhousing-0.2.0/ukhousing/man/ukh_sparql.Rd | 44 ukhousing-0.2.0/ukhousing/man/ukh_transactions.Rd | 12 ukhousing-0.2.0/ukhousing/man/ukhousing-defunct.Rd |only ukhousing-0.2.0/ukhousing/man/ukhousing-package.Rd | 10 ukhousing-0.2.0/ukhousing/tests/testthat/test-cache.R | 17 ukhousing-0.2.0/ukhousing/tests/testthat/test-epc.R | 64 - ukhousing-0.2.0/ukhousing/tests/testthat/test-hpi.R | 11 ukhousing-0.2.0/ukhousing/tests/testthat/test-pipr.R | 38 ukhousing-0.2.0/ukhousing/tests/testthat/test-ppd.R | 12 ukhousing-0.2.0/ukhousing/tests/testthat/test-sparql.R | 5 43 files changed, 696 insertions(+), 881 deletions(-)
Title: Survey-Weighted Analysis of Self-Reported Health Indicators
Description: Design-based analysis of population health survey data from the
World Health Organization (WHO) Stepwise Approach to Non-Communicable
Disease (NCD) Risk Factor Surveillance (STEPS), Demographic and Health
Surveys (DHS), Multiple Indicator Cluster Surveys (MICS) and similar
complex sample surveys, where chronic conditions are self-reported rather
than coded with the International Classification of Diseases (ICD).
Provides survey design constructors for DHS, MICS and STEPS microdata;
design-based prevalence for any binary indicators and groupings; a
self-reported multimorbidity count based on the Functional Comorbidity
Index (FCI) of Groll et al. (2005) <doi:10.1016/j.jclinepi.2004.10.018>,
with condition-pattern analysis, sensitivity bounds for missing answers,
and direct age standardisation to the WHO World Standard Population;
standard, generalized, Erreygers and Wagstaff concentration indices with
design-based standard errors following Kakwani, Wagstaff and van
Doorslaer (1997) [...truncated...]
Author: Sujon Mia [aut, cre] ,
Md. Atiqul Islam [ctb]
Maintainer: Sujon Mia <sujonsgc@gmail.com>
Diff between SurveyNCD versions 0.1.0 dated 2026-09-28 and 0.2.0 dated 2026-11-03
DESCRIPTION | 55 +++-- MD5 | 88 ++++++-- NAMESPACE | 19 + NEWS.md | 58 +++++ R/SurveyNCD-package.R | 33 +-- R/autoplot.R |only R/data.R |only R/design_helpers.R |only R/fci_items.R | 78 +++---- R/globals.R | 2 R/inequality_extras.R |only R/mm_bounds.R |only R/mm_patterns.R |only R/mm_prevalence.R | 181 ++++++++---------- R/mm_standardize.R |only R/multimorbidity_index.R | 35 ++- R/ncd_table.R |only R/plot_shap_summary.R | 29 +- R/recode_binary.R | 84 ++++---- R/survey_concentration_index.R | 229 +++++++++++++---------- R/survey_map_indicator.R | 3 R/survey_prevalence.R |only R/survey_shap.R | 29 +- R/survey_xgboost.R | 27 +- R/utils-internal.R |only README.md | 226 +++++++++++++++------- build/vignette.rds |binary data |only inst/WORDLIST |only inst/doc/calculating-health-inequality.html | 4 inst/doc/full-workflow.R |only inst/doc/full-workflow.Rmd |only inst/doc/full-workflow.html |only inst/doc/real-data-nhanes.R |only inst/doc/real-data-nhanes.Rmd |only inst/doc/real-data-nhanes.html |only man/SurveyNCD.Rd | 129 ++++++------ man/autoplot.surveyncd.Rd |only man/child_anthro.Rd |only man/design_helpers.Rd |only man/mm_bounds.Rd |only man/mm_patterns.Rd |only man/mm_prevalence.Rd | 64 +++--- man/mm_standardize.Rd |only man/multimorbidity_index.Rd | 14 + man/ncd_survey.Rd |only man/ncd_table.Rd |only man/plot_shap_summary.Rd | 28 +- man/survey_concentration_curve.Rd |only man/survey_concentration_index.Rd | 100 +++++++--- man/survey_map_indicator.Rd | 2 man/survey_prevalence.Rd |only man/survey_shap.Rd | 28 +- man/survey_slope_index.Rd |only man/survey_xgboost.Rd | 26 +- man/who_standard_population.Rd |only tests/testthat/test-datasets.R |only tests/testthat/test-survey_concentration_index.R | 28 ++ tests/testthat/test-survey_map_indicator.R |only tests/testthat/test-v020-api.R |only vignettes/full-workflow.Rmd |only vignettes/real-data-nhanes.Rmd |only 62 files changed, 957 insertions(+), 642 deletions(-)
Title: Core Survey Analysis Infrastructure
Description: A modern, 'S7'-based foundation for survey analysis
spanning both probability and non-probability samples. Probability
sample designs include Taylor series linearization, replicate
weights (BRR, Fay, jackknife, bootstrap), and two-phase
estimation, following 'Lumley' (2004) <doi:10.18637/jss.v009.i08>.
Non-probability sample designs support bootstrap and jackknife
variance estimation for opt-in panels and convenience samples.
Provides a unified estimator interface for means, frequencies,
totals, quantiles, ratios, correlations, regression, and t-tests,
with weighted 'polychoric' and 'polyserial' correlation following
'Mannan' (2025) <doi:10.2139/ssrn.6580480>. A metadata system
preserves 'haven'-style variable labels, value labels, and
question-preface attributes through all operations, alongside
dataset-level metadata that records the survey name, the fielding
vendor, and the field period. Uses a 'tidyselect' interface
throughout.
Author: Jacob Dennen [aut, cre, cph] ,
Thomas Lumley [ctb, cph]
Maintainer: Jacob Dennen <jdenn0514@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2026-06-08
Diff between surveycore versions 1.0.0 dated 2026-06-08 and 1.2.0 dated 2026-11-03
surveycore-1.0.0/surveycore/R/srr-stats-standards.R |only surveycore-1.0.0/surveycore/tests/testthat/test-srr-compliance.R |only surveycore-1.2.0/surveycore/DESCRIPTION | 21 surveycore-1.2.0/surveycore/MD5 | 456 surveycore-1.2.0/surveycore/NAMESPACE | 191 surveycore-1.2.0/surveycore/NEWS.md | 1384 - surveycore-1.2.0/surveycore/R/analysis-corr-helpers.R | 474 surveycore-1.2.0/surveycore/R/analysis-corr-latent.R | 3737 ++- surveycore-1.2.0/surveycore/R/analysis-corr.R | 1743 - surveycore-1.2.0/surveycore/R/analysis-covariance-helpers.R | 1322 - surveycore-1.2.0/surveycore/R/analysis-covariance.R | 1278 - surveycore-1.2.0/surveycore/R/analysis-diffs-helpers.R | 1448 - surveycore-1.2.0/surveycore/R/analysis-diffs.R | 1214 - surveycore-1.2.0/surveycore/R/analysis-effective-n.R | 771 surveycore-1.2.0/surveycore/R/analysis-freqs-helpers.R | 719 surveycore-1.2.0/surveycore/R/analysis-freqs.R | 1016 - surveycore-1.2.0/surveycore/R/analysis-helpers.R | 2379 +- 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deletions(-)
Title: Estimate Pollinator Body Size and Co-Varying Ecological Traits
Description: Tools to estimate pollinator body size and co-varying traits. This package contains
Bayesian predictive models of pollinator body size (for bees and hoverflies) and
bee foraging range, as well as preexisting predictive models for pollinator body size
(currently implemented for ants, bees, butterflies, flies, moths and wasps), bee tongue
length, foraging range, total field nectar loads and wing loading. An additional GitHub
repository <https://github.com/liamkendall/pollimetrydata> provides model objects to use
the bodysize and foraging.range functions internally. The Bayesian models are described in Kendall
et al. (2019) <doi:10.1002/ece3.4835> & Kendall et al. (2022) <doi:10.1002/ecy.3809>.
Author: Liam Kendall [aut, cre],
Ignasi Bartomeus [aut]
Maintainer: Liam Kendall <liam.k.kendall@gmail.com>
This is a re-admission after prior archival of version 1.0.1 dated 2018-11-19
Diff between pollimetry versions 1.0.1 dated 2018-11-19 and 1.1.1 dated 2026-11-03
DESCRIPTION | 33 +++-- MD5 | 59 ++++++--- NAMESPACE | 8 - NEWS.md |only R/bodysize.R | 250 ++++++++---------------------------------- R/equation_validation.R |only R/forage_dataset.R |only R/foragedist.R | 34 +++-- R/foraging.range.R |only R/headwidthsize.R | 82 +++++++------ R/imports.R |only R/lengthsize.R | 109 ++++++++---------- R/lengthwidthsize.R | 58 ++++----- R/nectarload.R | 14 +- R/pollimetry_dataset.R | 42 ++++++- R/prediction_helpers.R |only R/tongue_dataset.R |only R/tonguelength.R | 90 +++++++-------- R/wingloading.R | 17 +- README.md | 57 +++++---- build |only data/forage_dataset.rdata |only data/pollimetry_dataset.rdata |binary data/tongue_dataset.rdata |only inst/CITATION | 110 +++++++++++++----- man/bodysize.Rd | 39 ++---- man/forage_dataset.Rd |only man/foragedist.Rd | 31 +++-- man/foraging.range.Rd |only man/headwidthsize.Rd | 15 +- man/lengthsize.Rd | 68 ++++++----- man/lengthwidthsize.Rd | 24 ++-- man/nectarload.Rd | 13 +- man/pollimetry_dataset.Rd | 43 ++++++- man/tongue_dataset.Rd |only man/tonguelength.Rd | 24 ++-- man/wingloading.Rd | 15 +- 37 files changed, 628 insertions(+), 607 deletions(-)
Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains little R code or documentation. The main reference is the vignette. There is a shared object containing part of the 'CVODES' library, but its functionality is not accessible from R. 'StanHeaders' is primarily useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The [...truncated...]
Author: Ben Goodrich [cre, aut],
Joshua Pritikin [ctb],
Andrew Gelman [aut],
Bob Carpenter [aut],
Matt Hoffman [aut],
Daniel Lee [aut],
Michael Betancourt [aut],
Marcus Brubaker [aut],
Jiqiang Guo [aut],
Peter Li [aut],
Allen Riddell [aut],
Marco Inacio [aut [...truncated...]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between StanHeaders versions 2.39.1 dated 2026-09-02 and 2.39.1.1 dated 2026-11-03
DESCRIPTION | 7 ++++--- MD5 | 4 ++-- inst/include/stan/math/rev/core/Eigen_NumTraits.hpp | 7 ++++++- 3 files changed, 12 insertions(+), 6 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-09-15 1.6
2014-01-02 1.4
2013-04-18 1.3
2012-02-21 1.2
2011-11-14 1.1
2011-11-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-10-10 1.8
2023-12-05 1.7
2023-08-11 1.6
2020-07-01 1.5
2020-06-04 1.4
2020-05-29 1.3
2020-02-11 1.2
2019-11-27 1.1.0
2019-08-23 0.1.0
Title: Processing DAS Data Files
Description: Process and summarize DAS data files.
These files are typically, but do not have to be
DAS <https://repository.library.noaa.gov/view/noaa/3174> data
produced by the Southwest Fisheries Science Center (SWFSC) program 'WinCruz'.
This package standardizes and streamlines basic DAS data processing,
and includes a PDF with the DAS data format requirements expected by the package.
Author: Sam Woodman [aut, cre]
Maintainer: Sam Woodman <sam.woodman@noaa.gov>
Diff between swfscDAS versions 0.6.4 dated 2025-06-10 and 0.7.0 dated 2026-11-03
swfscDAS-0.6.4/swfscDAS/inst/Ship_sample.dat |only swfscDAS-0.6.4/swfscDAS/inst/SpCodes_sample.dat |only swfscDAS-0.6.4/swfscDAS/inst/das_sample.das |only swfscDAS-0.6.4/swfscDAS/inst/das_sample_randpicks.csv |only swfscDAS-0.6.4/swfscDAS/inst/das_sample_stratum.csv |only swfscDAS-0.7.0/swfscDAS/DESCRIPTION | 16 swfscDAS-0.7.0/swfscDAS/MD5 | 137 ++- swfscDAS-0.7.0/swfscDAS/NAMESPACE | 155 ++-- swfscDAS-0.7.0/swfscDAS/NEWS.md | 29 swfscDAS-0.7.0/swfscDAS/R/as_das_df.R | 2 swfscDAS-0.7.0/swfscDAS/R/das_check.R | 80 +- swfscDAS-0.7.0/swfscDAS/R/das_chop_condition.R | 22 swfscDAS-0.7.0/swfscDAS/R/das_chop_equallength.R | 10 swfscDAS-0.7.0/swfscDAS/R/das_chop_section.R | 12 swfscDAS-0.7.0/swfscDAS/R/das_class.R | 2 swfscDAS-0.7.0/swfscDAS/R/das_comments.R | 4 swfscDAS-0.7.0/swfscDAS/R/das_effort.R | 226 +++--- swfscDAS-0.7.0/swfscDAS/R/das_effort_sight.R | 20 swfscDAS-0.7.0/swfscDAS/R/das_effort_strata.R | 67 - swfscDAS-0.7.0/swfscDAS/R/das_format_pdf.R | 28 swfscDAS-0.7.0/swfscDAS/R/das_intersects_strata.R | 66 - swfscDAS-0.7.0/swfscDAS/R/das_process.R | 92 +- swfscDAS-0.7.0/swfscDAS/R/das_read.R | 50 - swfscDAS-0.7.0/swfscDAS/R/das_segdata.R | 116 +-- swfscDAS-0.7.0/swfscDAS/R/das_sight.R | 319 ++++----- swfscDAS-0.7.0/swfscDAS/R/das_spcodes.R |only swfscDAS-0.7.0/swfscDAS/R/distance_greatcircle.R | 2 swfscDAS-0.7.0/swfscDAS/R/randpicks_convert.R | 37 - swfscDAS-0.7.0/swfscDAS/R/subsetting.R | 23 swfscDAS-0.7.0/swfscDAS/R/swfscDAS-internal.R | 10 swfscDAS-0.7.0/swfscDAS/R/swfscDAS-package.R | 10 swfscDAS-0.7.0/swfscDAS/README.md | 7 swfscDAS-0.7.0/swfscDAS/build/vignette.rds |binary swfscDAS-0.7.0/swfscDAS/inst/doc/DAS_data_join.R | 12 swfscDAS-0.7.0/swfscDAS/inst/doc/DAS_data_join.Rmd | 12 swfscDAS-0.7.0/swfscDAS/inst/doc/DAS_data_join.html | 17 swfscDAS-0.7.0/swfscDAS/inst/doc/swfscDAS.R | 27 swfscDAS-0.7.0/swfscDAS/inst/doc/swfscDAS.Rmd | 29 swfscDAS-0.7.0/swfscDAS/inst/doc/swfscDAS.html | 329 +++++---- swfscDAS-0.7.0/swfscDAS/inst/extdata |only swfscDAS-0.7.0/swfscDAS/man/as_das_df.Rd | 8 swfscDAS-0.7.0/swfscDAS/man/as_das_dfr.Rd | 8 swfscDAS-0.7.0/swfscDAS/man/das_check.Rd | 126 +-- swfscDAS-0.7.0/swfscDAS/man/das_chop_condition.Rd | 90 +- swfscDAS-0.7.0/swfscDAS/man/das_chop_equallength.Rd | 120 +-- swfscDAS-0.7.0/swfscDAS/man/das_chop_section.Rd | 18 swfscDAS-0.7.0/swfscDAS/man/das_comments.Rd | 8 swfscDAS-0.7.0/swfscDAS/man/das_df-class.Rd | 110 +-- swfscDAS-0.7.0/swfscDAS/man/das_dfr-class.Rd | 70 +- swfscDAS-0.7.0/swfscDAS/man/das_effort.Rd | 174 ++-- swfscDAS-0.7.0/swfscDAS/man/das_effort_sight.Rd | 46 - swfscDAS-0.7.0/swfscDAS/man/das_effort_strata.Rd | 47 - swfscDAS-0.7.0/swfscDAS/man/das_format_pdf.Rd | 22 swfscDAS-0.7.0/swfscDAS/man/das_intersects_strata.Rd | 52 - swfscDAS-0.7.0/swfscDAS/man/das_process.Rd | 175 ++--- swfscDAS-0.7.0/swfscDAS/man/das_read.Rd | 112 +-- swfscDAS-0.7.0/swfscDAS/man/das_segdata.Rd | 71 +- swfscDAS-0.7.0/swfscDAS/man/das_sight.Rd | 349 +++++----- swfscDAS-0.7.0/swfscDAS/man/das_spcodes.Rd |only swfscDAS-0.7.0/swfscDAS/man/randpicks_convert.Rd | 15 swfscDAS-0.7.0/swfscDAS/man/subsetting.Rd | 23 swfscDAS-0.7.0/swfscDAS/man/swfscAirDAS-internals.Rd | 5 swfscDAS-0.7.0/swfscDAS/tests/testthat/test-class.R | 4 swfscDAS-0.7.0/swfscDAS/tests/testthat/test-das_check.R | 6 swfscDAS-0.7.0/swfscDAS/tests/testthat/test-effort_strata.R | 6 swfscDAS-0.7.0/swfscDAS/tests/testthat/test-output.R | 10 swfscDAS-0.7.0/swfscDAS/tests/testthat/test-process.R | 2 swfscDAS-0.7.0/swfscDAS/tests/testthat/test-subsetting.R | 2 swfscDAS-0.7.0/swfscDAS/tests/testthat/test-zero_sighting_events.R | 14 swfscDAS-0.7.0/swfscDAS/vignettes/DAS_data_join.Rmd | 12 swfscDAS-0.7.0/swfscDAS/vignettes/swfscDAS.Rmd | 29 71 files changed, 1969 insertions(+), 1733 deletions(-)
Title: Calculate the Standardized Difference for Numeric, Binary and
Category Variables in Apache Spark
Description: Provides functions to compute standardized differences for numeric, binary,
and categorical variables on Apache Spark DataFrames using 'sparklyr'.
The implementation mirrors the methods used in the 'stddiff' package but
operates on distributed data. See Zhicheng Du, Yuantao Hao (2022)
<doi:10.32614/CRAN.package.stddiff> for reference.
Author: Alicja Januszkiewicz [aut, cre, cph]
Maintainer: Alicja Januszkiewicz <cran.alicja.januszkiewicz@gmail.com>
Diff between stddiff.spark versions 1.0 dated 2026-01-15 and 1.1.0 dated 2026-11-03
stddiff.spark-1.0/stddiff.spark/man/check_binary_group.Rd |only stddiff.spark-1.0/stddiff.spark/man/spark_to_r_type.Rd |only stddiff.spark-1.1.0/stddiff.spark/DESCRIPTION | 12 stddiff.spark-1.1.0/stddiff.spark/MD5 | 20 stddiff.spark-1.1.0/stddiff.spark/NEWS.md | 86 stddiff.spark-1.1.0/stddiff.spark/R/stddiff_spark.R | 1192 +++++----- stddiff.spark-1.1.0/stddiff.spark/README.md | 42 stddiff.spark-1.1.0/stddiff.spark/man/stddiff.binary.Rd | 36 stddiff.spark-1.1.0/stddiff.spark/man/stddiff.category.Rd | 30 stddiff.spark-1.1.0/stddiff.spark/man/stddiff.numeric.Rd | 19 stddiff.spark-1.1.0/stddiff.spark/man/validate_stddiff_inputs.Rd | 2 stddiff.spark-1.1.0/stddiff.spark/tests/testthat/test_stddiff_spark.R | 1007 ++++++-- 12 files changed, 1593 insertions(+), 853 deletions(-)
Title: Bayesian Additive Regression Trees with Stan-Sampled Parametric
Extensions
Description: Fits semiparametric linear and multilevel models with non-parametric additive Bayesian additive regression tree (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) components and Stan (Stan Development Team (2021) <https://mc-stan.org/>) sampled parametric ones. Multilevel models can be expressed using 'lme4' syntax (Bates, Maechler, Bolker, and Walker (2015) <doi:10.18637/jss.v067.i01>).
Author: Vincent Dorie [aut, cre] ,
Ben Goodrich [ctb] ,
Jonah Gabry [ctb] ,
Imad Ali [ctb] ,
Sam Brilleman [ctb] ,
Paul-Christian Burkner [ctb] ,
Joshua Pritikin [ctb] ,
Andrew Gelman [ctb] ,
Bob Carpenter [ctb] ,
Matt Hoffman [ctb] ,
Daniel Lee [ctb] ,
Mich [...truncated...]
Maintainer: Vincent Dorie <vdorie@gmail.com>
Diff between stan4bart versions 0.0-13 dated 2026-08-21 and 0.0-13.1 dated 2026-11-03
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/NEWS.Rd | 10 ++++++++++ src/include/stan/math/prim/eigen_plugins.h | 3 +++ src/include/stan/math/rev/core/Eigen_NumTraits.hpp | 6 +++++- 5 files changed, 26 insertions(+), 9 deletions(-)
Title: Bayesian Inference of Boolean Genetic Networks
Description: Implements a fully Bayesian Markov chain Monte Carlo (MCMC) approach for inferring the topology and Boolean logic transition functions of gene regulatory networks from noisy, binary time-series expression data. Network structure and Boolean rules are sampled jointly from their posterior distribution, providing principled uncertainty quantification rather than a single point estimate. Method described in Han et al. (2014) <doi:10.1371/journal.pone.0115806>.
Author: Anson Li [aut, cre],
Shengtong Han [aut]
Maintainer: Anson Li <liyuanrui618@gmail.com>
Diff between BBNI versions 0.2.2 dated 2026-08-19 and 0.2.3 dated 2026-11-03
DESCRIPTION | 10 - MD5 | 39 +++-- NAMESPACE | 3 NEWS.md | 8 + R/bbni.r | 80 +++++++--- R/methods.R |only R/simulate.R | 23 ++ R/visualize.R | 37 ++++ README.md | 2 inst/doc/Introduction_to_BBNI.Rmd | 55 +++++-- inst/doc/Introduction_to_BBNI.html | 280 ++++++++++++++++++++---------------- man/bbni_class.Rd |only man/plot.bbni.Rd |only man/print.bbni.Rd |only man/run_bbni.Rd | 1 man/summary.bbni.Rd |only tests/testthat/test-bbni.R |only tests/testthat/test-methods.R |only tests/testthat/test-proposals.R |only tests/testthat/test-simulate.R |only tests/testthat/test-utils.R | 41 ++++- tests/testthat/test-validation.R |only tests/testthat/test-visualize.R |only vignettes/Introduction_to_BBNI.Rmd | 55 +++++-- vignettes/figures/trace-plot-1.png |binary vignettes/figures/yeast-trace-1.png |binary 26 files changed, 447 insertions(+), 187 deletions(-)