Title: Constrained Generalized Additive Model
Description: A constrained generalized additive model is fitted by the cgam routine. Given a set of predictors, each of which may have a shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The ShapeSelect routine chooses a subset of predictor variables and describes the component relationships with the response. For each predictor, the user needs only specify a set of possible shape or order restrictions. A model selection method chooses the shapes and orderings of the relationships as well as the variables. The cone information criterion (CIC) is used to select the best combination of variables and shapes. A genetic algorithm may be used when the set of possible models is large. In addition, the cgam routine implements a two-dimensional isotonic regression using warped-plane splines without additivity assumptions. It can also fit a convex or concave regression surface with [...truncated...]
Author: Mary Meyer [aut],
Xiyue Liao [aut, cre]
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between cgam versions 1.33 dated 2026-10-20 and 1.34 dated 2026-11-15
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Title: Exploratory Subgroup Identification in Survival and GLM Outcomes
Description: Implements statistical methods for exploratory subgroup
identification in clinical trials. Provides tools for identifying patient
subgroups with differential treatment effects using machine learning
approaches including Generalized Random Forests (GRF), LASSO
regularization, and exhaustive combinatorial search algorithms. Supports
survival endpoints (Cox proportional hazards), binary outcomes (log odds
ratio, log relative risk, risk difference), continuous outcomes (mean
difference), and count / rate outcomes (log incidence rate ratio via
Poisson, quasi-Poisson, or negative-binomial GLMs with optional
person-time offset). Features bootstrap bias correction using
infinitesimal jackknife methods to address selection bias in post-hoc
analyses. Designed for clinical researchers conducting exploratory
subgroup analyses in randomized controlled trials, particularly for
multi-regional clinical trials (MRCT) requiring regional consistency
evaluation. Methods are described in Leon et al. (2024) [...truncated...]
Author: Larry Leon [aut, cre]
Maintainer: Larry Leon <larry.leon.05@post.harvard.edu>
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Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and
regression models.
Author: Max Kuhn [aut, cre] ,
Jed Wing [ctb],
Steve Weston [ctb],
Andre Williams [ctb],
Chris Keefer [ctb],
Allan Engelhardt [ctb],
Tony Cooper [ctb],
Zachary Mayer [ctb],
Brenton Kenkel [ctb],
R Core Team [ctb],
Michael Benesty [ctb],
Reynald Lescarbeau [ct [...truncated...]
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between caret versions 7.0-1 dated 2024-12-09 and 7.1-0 dated 2026-11-15
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caret-7.0-1/caret/tests/testthat/test_models_bagEarth.R |only caret-7.0-1/caret/tests/testthat/test_multiclassSummary.R |only caret-7.0-1/caret/tests/testthat/test_nearZeroVar.R |only caret-7.0-1/caret/tests/testthat/test_preProcess.R |only caret-7.0-1/caret/tests/testthat/test_preProcess_internals.R |only caret-7.0-1/caret/tests/testthat/test_preProcess_methods.R |only caret-7.0-1/caret/tests/testthat/test_ptypes.R |only caret-7.0-1/caret/tests/testthat/test_recipe_fs.R |only caret-7.0-1/caret/tests/testthat/test_recipe_upsample.R |only caret-7.0-1/caret/tests/testthat/test_resamples.R |only caret-7.0-1/caret/tests/testthat/test_safs.R |only caret-7.0-1/caret/tests/testthat/test_sampling_options.R |only caret-7.0-1/caret/tests/testthat/test_sparse_Matrix.R |only caret-7.0-1/caret/tests/testthat/test_spatialSign.R |only caret-7.0-1/caret/tests/testthat/test_tibble.R |only caret-7.0-1/caret/tests/testthat/test_twoClassSummary.R |only caret-7.0-1/caret/tests/testthat/test_updates.R |only caret-7.0-1/caret/tests/testthat/test_varImp.R |only caret-7.0-1/caret/tests/testthat/trim.R |only caret-7.0-1/caret/tests/testthat/trim_C5.R |only caret-7.0-1/caret/tests/testthat/trim_bayesglm.R |only caret-7.0-1/caret/tests/testthat/trim_glm.R |only caret-7.0-1/caret/tests/testthat/trim_glmnet.R |only caret-7.0-1/caret/tests/testthat/trim_rpart.R |only caret-7.0-1/caret/tests/testthat/trim_train.R |only caret-7.0-1/caret/tests/testthat/trim_treebag.R |only caret-7.1-0/caret/DESCRIPTION | 33 caret-7.1-0/caret/MD5 | 604 +- caret-7.1-0/caret/NAMESPACE | 154 caret-7.1-0/caret/NEWS.md |only caret-7.1-0/caret/R/BoxCoxTrans.R | 140 caret-7.1-0/caret/R/aaa.R | 236 caret-7.1-0/caret/R/adaptive.R | 1897 ++++--- caret-7.1-0/caret/R/avNNet.R | 423 - caret-7.1-0/caret/R/bag.R | 1020 ++-- caret-7.1-0/caret/R/bagEarth.R | 429 - caret-7.1-0/caret/R/bagFDA.R | 409 - caret-7.1-0/caret/R/basic2x2Stats.R | 23 caret-7.1-0/caret/R/calibration.R | 379 - caret-7.1-0/caret/R/caret-package.R | 279 - caret-7.1-0/caret/R/caretTheme.R | 5 caret-7.1-0/caret/R/classDist.R | 258 - caret-7.1-0/caret/R/classLevels.R | 71 caret-7.1-0/caret/R/common_code.R | 107 caret-7.1-0/caret/R/confusionMatrix.R | 922 ++- caret-7.1-0/caret/R/createDataPartition.R | 344 - caret-7.1-0/caret/R/createModel.R | 82 caret-7.1-0/caret/R/createResample.R | 12 caret-7.1-0/caret/R/diag.R | 4 caret-7.1-0/caret/R/dotplot.varImp.train.R | 104 caret-7.1-0/caret/R/dummyVar.R | 350 - caret-7.1-0/caret/R/expoTrans.R | 144 caret-7.1-0/caret/R/extractPrediction.R | 317 - caret-7.1-0/caret/R/extractProb.R | 154 caret-7.1-0/caret/R/featurePlot.R | 167 caret-7.1-0/caret/R/filterVarImp.R | 171 caret-7.1-0/caret/R/findCorrelation.R | 177 caret-7.1-0/caret/R/findLinearCombos.R | 170 caret-7.1-0/caret/R/format.bagEarth.R | 82 caret-7.1-0/caret/R/gafs.R | 2200 +++++--- caret-7.1-0/caret/R/getTrainPerf.R | 1 caret-7.1-0/caret/R/ggplot.R | 431 + caret-7.1-0/caret/R/heldout.R | 232 caret-7.1-0/caret/R/icr.R | 265 - caret-7.1-0/caret/R/knn3.R | 410 - caret-7.1-0/caret/R/knnreg.R | 221 caret-7.1-0/caret/R/lattice.train.R | 505 +- caret-7.1-0/caret/R/learning_curve.R | 172 caret-7.1-0/caret/R/lift.R | 593 +- caret-7.1-0/caret/R/maxDissim.R | 273 - caret-7.1-0/caret/R/misc.R | 1053 ++-- caret-7.1-0/caret/R/modelLookup.R | 240 caret-7.1-0/caret/R/nearZeroVar.R | 230 caret-7.1-0/caret/R/negPredValue.R | 87 caret-7.1-0/caret/R/panel.needle.R | 102 caret-7.1-0/caret/R/pcaNNet.R | 341 - caret-7.1-0/caret/R/plot.train.R | 539 +- caret-7.1-0/caret/R/plot.varImp.train.R | 147 caret-7.1-0/caret/R/plotClassProbs.R | 212 caret-7.1-0/caret/R/plotObsVsPred.R | 242 caret-7.1-0/caret/R/plsda.R | 408 - caret-7.1-0/caret/R/posPredValue.R | 82 caret-7.1-0/caret/R/postResample.R | 418 - caret-7.1-0/caret/R/preProcess.R | 1478 +++-- caret-7.1-0/caret/R/prec_rec.R | 267 - caret-7.1-0/caret/R/predict.train.R | 239 caret-7.1-0/caret/R/predictionFunction.R | 26 caret-7.1-0/caret/R/predictors.R | 138 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|only caret-7.1-0/caret/tests/testthat/test-plot.varImp.train.R |only caret-7.1-0/caret/tests/testthat/test-plsda.R |only caret-7.1-0/caret/tests/testthat/test-postResample.R |only caret-7.1-0/caret/tests/testthat/test-preProcess-internals.R |only caret-7.1-0/caret/tests/testthat/test-preProcess-methods.R |only caret-7.1-0/caret/tests/testthat/test-preProcess.R |only caret-7.1-0/caret/tests/testthat/test-prec_rec.R |only caret-7.1-0/caret/tests/testthat/test-predict.train.R |only caret-7.1-0/caret/tests/testthat/test-predictors.R |only caret-7.1-0/caret/tests/testthat/test-print.train.R |only caret-7.1-0/caret/tests/testthat/test-probFunction.R |only caret-7.1-0/caret/tests/testthat/test-recipe-fs.R |only caret-7.1-0/caret/tests/testthat/test-reg_sims.R |only caret-7.1-0/caret/tests/testthat/test-resampleHist.R |only caret-7.1-0/caret/tests/testthat/test-resampleSummary.R |only caret-7.1-0/caret/tests/testthat/test-resamples.R |only caret-7.1-0/caret/tests/testthat/test-rfe.R |only caret-7.1-0/caret/tests/testthat/test-safs.R |only caret-7.1-0/caret/tests/testthat/test-sampling.R |only caret-7.1-0/caret/tests/testthat/test-selectByFilter.R |only caret-7.1-0/caret/tests/testthat/test-selection.R |only caret-7.1-0/caret/tests/testthat/test-sensitivity.R |only caret-7.1-0/caret/tests/testthat/test-spatialSign.R |only caret-7.1-0/caret/tests/testthat/test-splsda.R |only caret-7.1-0/caret/tests/testthat/test-suggestions.R |only caret-7.1-0/caret/tests/testthat/test-thresholder.R |only caret-7.1-0/caret/tests/testthat/test-train.default-ptypes.R |only caret-7.1-0/caret/tests/testthat/test-train.default-sparse.R |only caret-7.1-0/caret/tests/testthat/test-train.default-tibble.R |only caret-7.1-0/caret/tests/testthat/test-train.default-validation.R |only caret-7.1-0/caret/tests/testthat/test-train.default.R |only caret-7.1-0/caret/tests/testthat/test-trainControl.R |only caret-7.1-0/caret/tests/testthat/test-train_recipes.R |only caret-7.1-0/caret/tests/testthat/test-trim.R |only caret-7.1-0/caret/tests/testthat/test-twoClassSim.R |only caret-7.1-0/caret/tests/testthat/test-updates.R |only caret-7.1-0/caret/tests/testthat/test-varImp.R |only caret-7.1-0/caret/tests/testthat/test-varImp.train.R |only caret-7.1-0/caret/tests/testthat/test-workflows.R |only caret-7.1-0/caret/tests/testthat/test-yardstick.R |only caret-7.1-0/caret/vignettes/caret.Rmd | 30 355 files changed, 26581 insertions(+), 19896 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-03 0.2.24
2021-01-12 0.2.21
2020-11-19 0.2.1
2020-06-03 0.2.0
2020-01-09 0.1.19
2019-06-28 0.1.17