Title: Two-Stage Difference-in-Differences Following Gardner (2021)
Description: Estimates Two-way Fixed Effects difference-in-differences/event-study models using the approach proposed by Gardner (2021) <doi:10.48550/arXiv.2207.05943>. To avoid the problems caused by OLS estimation of the Two-way Fixed Effects model, this function first estimates the fixed effects and covariates using untreated observations and then in a second stage, estimates the treatment effects.
Author: Kyle Butts [aut, cre] ,
John Gardner [aut] ,
Grant McDermott [ctb] ,
Laurent Berge [ctb]
Maintainer: Kyle Butts <buttskyle96@gmail.com>
Diff between did2s versions 1.2.0 dated 2025-09-19 and 1.2.1 dated 2026-03-04
DESCRIPTION | 6 ++--- MD5 | 24 +++++++++++----------- R/data.R | 3 +- R/did2s.R | 9 +++++--- build/vignette.rds |binary data/castle.rda |binary data/df_het.rda |binary data/df_hom.rda |binary inst/doc/Two-Stage-Difference-in-Differences.html | 8 +++---- man/castle.Rd | 3 +- man/did2s.Rd | 7 +++--- tests/testthat/test-did2s.R | 12 +++-------- tests/testthat/test-event-study.R | 3 -- 13 files changed, 38 insertions(+), 37 deletions(-)
Title: Interface to Download Meteorological (and Hydrological) Datasets
Description: Automatize downloading of meteorological and hydrological data from publicly available repositories:
OGIMET (<http://ogimet.com/index.phtml.en>),
University of Wyoming - atmospheric vertical profiling data (<http://weather.uwyo.edu/upperair/>),
Polish Institute of Meteorology and Water Management - National Research Institute (<https://danepubliczne.imgw.pl>),
and National Oceanic & Atmospheric Administration (NOAA).
This package also allows for searching geographical coordinates for each observation and calculate distances to the nearest stations.
Author: Bartosz Czernecki [aut, cre] ,
Arkadiusz Glogowski [aut] ,
Jakub Nowosad [aut] ,
IMGW-PIB [ctb]
Maintainer: Bartosz Czernecki <nwp@amu.edu.pl>
Diff between climate versions 1.2.9 dated 2026-02-03 and 1.3.0 dated 2026-03-04
climate-1.2.9/climate/inst/parser.R |only climate-1.3.0/climate/DESCRIPTION | 6 climate-1.3.0/climate/MD5 | 36 +- climate-1.3.0/climate/NAMESPACE | 1 climate-1.3.0/climate/NEWS.md | 13 climate-1.3.0/climate/R/clean_metadata_hydro.R | 24 - climate-1.3.0/climate/R/hydro_imgw_daily.R | 40 -- climate-1.3.0/climate/R/hydro_imgw_monthly.R | 20 - climate-1.3.0/climate/R/hydro_metadata_imgw.R | 6 climate-1.3.0/climate/R/match_imgw_wmoid_inds.R | 2 climate-1.3.0/climate/R/meteo_imgw.R | 7 climate-1.3.0/climate/R/meteo_imgw_daily.R | 1 climate-1.3.0/climate/R/meteo_imgw_hourly.R | 4 climate-1.3.0/climate/R/meteo_imgw_monthly.R | 27 - climate-1.3.0/climate/R/utils.R | 33 ++ climate-1.3.0/climate/inst/doc/getstarted.html | 329 +++----------------- climate-1.3.0/climate/man/find_all_station_names.Rd |only climate-1.3.0/climate/man/meteo_imgw.Rd | 7 climate-1.3.0/climate/man/meteo_imgw_hourly.Rd | 3 climate-1.3.0/climate/man/meteo_imgw_monthly.Rd | 4 20 files changed, 188 insertions(+), 375 deletions(-)
Title: A Collection of Large Language Model Assistants
Description: Provides a collection of ergonomic large language model assistants
designed to help you complete repetitive, hard-to-automate tasks quickly.
After selecting some code, press the keyboard shortcut you've chosen to
trigger the package app, select an assistant, and watch your chore be
carried out. While the package ships with a number of chore helpers for R
package development, users can create custom helpers just by writing some
instructions in a markdown file.
Author: Simon Couch [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between chores versions 0.3.0 dated 2025-12-09 and 0.3.1 dated 2026-03-04
DESCRIPTION | 6 - MD5 | 56 +++++++------- NEWS.md | 11 ++ R/doc-helper-cli.R | 10 +- R/doc-helper-roxygen.R | 12 +-- R/doc-helper-testthat.R | 10 +- R/helper-class.R | 2 R/init-helper.R | 26 ++++-- R/prompt.R | 22 ++++- README.md | 6 - inst/doc/chores.Rmd | 19 ++++ inst/doc/chores.html | 71 +++++++++++------- inst/doc/gallery.html | 114 ++++++++++++++--------------- man/cli_helper.Rd | 10 +- man/dot-init_helper.Rd | 26 ++++-- man/prompt.Rd | 5 + man/roxygen_helper.Rd | 12 +-- man/testthat_helper.Rd | 10 +- tests/testthat/_snaps/helper-add-remove.md | 4 - tests/testthat/_snaps/helper-class.md | 2 tests/testthat/_snaps/helper-init.md | 8 +- tests/testthat/_snaps/prompt.md | 18 ++++ tests/testthat/_snaps/utils.md | 6 - tests/testthat/test-helper-add-remove.R | 29 +++---- tests/testthat/test-helper-class.R | 14 ++- tests/testthat/test-helper-init.R | 8 +- tests/testthat/test-prompt.R | 19 ++++ tests/testthat/test-utils.R | 5 - vignettes/chores.Rmd | 19 ++++ 29 files changed, 348 insertions(+), 212 deletions(-)
Title: Bayesian Benefit Risk Analysis
Description: Quantitative methods for benefit-risk analysis help to condense
complex decisions into a univariate metric describing the overall benefit
relative to risk. One approach is to use the multi-criteria decision
analysis framework (MCDA), as in Mussen, Salek, and Walker
(2007) <doi:10.1002/pds.1435>. Bayesian benefit-risk
analysis incorporates uncertainty through posterior distributions which are
inputs to the benefit-risk framework. The brisk package provides functions
to assist with Bayesian benefit-risk analyses, such as MCDA.
Users input posterior samples, utility functions, weights, and the package
outputs quantitative benefit-risk scores. The posterior of the benefit-risk
scores for each group can be compared. Some plotting capabilities are also
included.
Author: Richard Payne [aut, cre],
Sai Dharmarajan [rev],
Eli Lilly and Company [cph]
Maintainer: Richard Payne <paynestatistics@gmail.com>
Diff between brisk versions 0.1.0 dated 2022-08-31 and 0.1.1 dated 2026-03-04
DESCRIPTION | 12 MD5 | 48 - NAMESPACE | 2 NEWS.md |only R/benefit_risk.R | 14 R/imports.R | 2 R/plot.R | 8 README.md | 24 build/vignette.rds |binary inst/doc/random_weights.R | 2 inst/doc/random_weights.html | 502 +++++++++++----- inst/hex-brisk.png |only man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-11-2.png |binary man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-12-2.png |binary man/figures/README-unnamed-chunk-12-3.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary tests/testthat/_snaps/plot/plot-ref.png |binary tests/testthat/_snaps/plot/plot-utility-ref.png |binary tests/testthat/_snaps/plot/plot-utility-stacked-ref.png |binary tests/testthat/_snaps/plot/plot-utility-stacked.png |binary tests/testthat/_snaps/plot/plot-utility.png |binary tests/testthat/_snaps/plot/plot.png |binary tests/testthat/test-summary.R | 2 26 files changed, 417 insertions(+), 199 deletions(-)
Title: A Magical Framework for Collaborative & Reproducible Data
Analysis
Description: A comprehensive data analysis framework for NIH-funded research that streamlines workflows for both data cleaning and preparing NIH Data Archive ('NDA') submission templates. Provides unified access to multiple data sources ('REDCap', 'MongoDB', 'Qualtrics', 'SQL', 'ORACLE') through interfaces to their APIs, with specialized functions for data cleaning, filtering, merging, and parsing. Features automatic validation, field harmonization, and memory-aware processing to enhance reproducibility in multi-site collaborative research as described in Mittal et al. (2021) <doi:10.20900/jpbs.20210011>.
Author: Joshua G. Kenney [aut, cre],
Trevor F. Williams [aut],
Minerva K. Pappu [aut],
Michael J. Spilka [aut],
Danielle N. Pratt [ctb],
Victor J. Pokorny [ctb],
Santiago Castiello de Obeso [ctb],
Praveen Suthaharan [ctb],
Christian R. Horgan [ctb]
Maintainer: Joshua G. Kenney <joshua.kenney@yale.edu>
Diff between wizaRdry versions 0.6.4 dated 2026-02-03 and 0.6.5 dated 2026-03-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/NdaClasses.R | 3 +++ R/getMongo.R | 4 +++- man/wizaRdry-package.Rd | 2 +- 5 files changed, 15 insertions(+), 10 deletions(-)
Title: Efficient Implementation of K-Means++ Algorithm
Description: Efficient implementation of K-Means++ algorithm. For more
information see (1) "kmeans++ the advantages of the k-means++
algorithm" by David Arthur and Sergei Vassilvitskii (2007),
Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete
algorithms, Society for Industrial and Applied Mathematics,
Philadelphia, PA, USA, pp. 1027-1035, and (2) "The Effectiveness of
Lloyd-Type Methods for the k-Means Problem" by Rafail Ostrovsky, Yuval
Rabani, Leonard J. Schulman and Chaitanya Swamy
<doi:10.1145/2395116.2395117>.
Author: Aviezer Lifshitz [aut, cre],
Amos Tanay [aut],
Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between tglkmeans versions 0.5.8 dated 2026-01-14 and 0.6.1 dated 2026-03-04
DESCRIPTION | 19 ++-- MD5 | 92 +++++++++++--------- NAMESPACE | 16 --- NEWS.md | 14 +++ R/TGL_kmeans.R | 163 ++++++++++++++++++++++++++++++++----- R/intra_clustering.R | 7 - R/misc.R | 2 R/tests.R | 26 +++++ R/tglkmeans-package.R | 9 -- R/utils-pipe.R | 1 R/zzz.R | 4 inst/doc/usage.R | 8 - inst/doc/usage.Rmd | 10 +- inst/doc/usage.html | 26 ++--- man/TGL_kmeans.Rd | 9 +- man/TGL_kmeans_tidy.Rd | 9 +- man/match_clusters.Rd |only man/pipe.Rd | 3 man/predict_tgl_kmeans.Rd |only man/test_clustering.Rd |only man/tglkmeans.set_parallel.Rd | 2 src/AParamStat.cpp | 2 src/AParamStat.h | 20 ++-- src/AddCoreWorker.h |only src/DownsampleWorker.cpp | 8 - src/IndirectSort.h | 5 - src/KMeans.cpp | 137 +++++++++++++++++++++++-------- src/KMeans.h | 26 ++--- src/KMeansCenterBase.cpp | 2 src/KMeansCenterBase.h | 18 ++-- src/KMeansCenterMean.cpp | 2 src/KMeansCenterMean.h | 18 ++-- src/KMeansCenterMeanEuclid.cpp | 4 src/KMeansCenterMeanEuclid.h | 2 src/KMeansCenterMeanPearson.cpp | 13 ++ src/KMeansCenterMeanPearson.h | 4 src/KMeansCenterMeanSpearman.cpp | 27 +++++- src/KMeansCenterMeanSpearman.h | 15 ++- src/Ranking.cpp | 4 src/Ranking.h | 5 - src/ReassignWorker.cpp | 34 +++++++ src/ReassignWorker.h | 14 ++- src/TGLkmeans.cpp | 14 ++- src/UpdateMinDistanceWorker.cpp | 39 +++----- src/UpdateMinDistanceWorker.h | 22 +--- tests/testthat.R | 1 tests/testthat/helper-regression.R |only tests/testthat/test-clustering.R | 72 ++++++++++++++++ tests/testthat/test-regression.R |only vignettes/usage.Rmd | 10 +- 50 files changed, 653 insertions(+), 285 deletions(-)
Title: A Graph-Based Cross-Fitting Engine in R
Description: Provides a general cross-fitting engine for semiparametric estimation
(e.g., double/debiased machine learning). Supports user-defined target
functionals and directed acyclic graphs of nuisance learners with per-node
training fold widths, target-specific evaluation windows, and
fold-allocation modes ("overlap", "disjoint", "independence"). Returns
either numeric estimates (mode = "estimate") or cross-fitted prediction
functions (mode = "predict"), with configurable aggregation over panels
and repetitions, reuse-aware caching, and failure isolation, making it
well-suited for simulation studies and large benchmarks.
Author: Etienne Peyrot [aut, cre]
Maintainer: Etienne Peyrot <etienne.peyrot@inserm.fr>
Diff between crossfit versions 0.1.1 dated 2026-02-19 and 0.1.3 dated 2026-03-04
DESCRIPTION | 29 - MD5 | 12 NEWS.md | 14 R/engine.R | 1350 ++++++++++++++++++++++++++--------------------------- README.md | 40 + build/vignette.rds |binary man/crossfit.Rd | 2 7 files changed, 732 insertions(+), 715 deletions(-)
Title: Functions to Calculate Optimal Fourth Down Decisions in the
National Football League
Description: A set of functions to estimate outcomes of fourth down plays
in the National Football League and obtain fourth down plays from
<https://www.nfl.com/> and <https://www.espn.com/>.
Author: Ben Baldwin [aut, cre, cph],
Sebastian Carl [ctb]
Maintainer: Ben Baldwin <bbaldwin206@gmail.com>
Diff between nfl4th versions 1.0.6 dated 2026-02-17 and 1.0.7 dated 2026-03-04
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NEWS.md | 4 ++++ R/cache.R | 17 +++++++++++------ R/get_game_data.R | 2 ++ R/sysdata.rda |binary R/table_functions.R | 6 ++++-- R/wrapper.R | 6 ++++-- R/zzz.R | 8 ++++---- man/add_2pt_probs.Rd | 3 ++- man/add_4th_probs.Rd | 3 ++- man/get_4th_plays.Rd | 2 ++ man/make_2pt_table_data.Rd | 3 ++- man/make_table_data.Rd | 3 ++- 14 files changed, 55 insertions(+), 34 deletions(-)
Title: Simulate Impact of Different Urban Policies Through a General
Equilibrium Model
Description: Develops a General Equilibrium (GE) Model, which estimates key variables such as wages, the number of residents and workers, the prices of the floor space, and its distribution between commercial and residential use, as in Ahlfeldt et al., (2015) <doi:10.3982/ECTA10876>. By doing so, the model allows understanding the economic influence of different urban policies.
Author: David Zarruk [aut],
Roman Zarate [aut, cre]
Maintainer: Roman Zarate <rd.zarate40@gmail.com>
Diff between IGC.CSM versions 0.3.0 dated 2026-02-12 and 0.3.1 dated 2026-03-04
DESCRIPTION | 8 MD5 | 31 +- R/NoPricesInversionModel.R | 331 ++++++++++++------------- R/PricesInversionModel.R | 8 R/av_income_simple.R | 22 - R/commuting_matrix.R | 18 - R/density_development.R | 60 ++-- R/density_development_noprices.R |only R/inversionModel.R | 366 ++++++++++++++-------------- R/living_amenities_simple.R | 82 +++--- R/productivity.R | 64 ++-- R/solveModel.R | 504 ++++++++++++++++++--------------------- R/wages_inversion.R | 152 +++++------ README.md | 83 +++++- man/PricesInversionModel.Rd | 22 - man/inversionModel.Rd | 6 man/solveModel.Rd | 12 17 files changed, 902 insertions(+), 867 deletions(-)
Title: Techniques to Build Better Balance
Description: Build better balance in causal inference models. 'halfmoon'
helps you assess propensity score models for balance between groups
using metrics like standardized mean differences and visualization
techniques like mirrored histograms. 'halfmoon' supports both
weighting and matching techniques.
Author: Malcolm Barrett [aut, cre, cph]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between halfmoon versions 0.1.0 dated 2023-05-30 and 0.2.0 dated 2026-03-04
DESCRIPTION | 20 MD5 | 318 ++++++- NAMESPACE | 71 + NEWS.md |only R/add_ess_header.R |only R/autoplot-methods.R |only R/bal_ess.R |only R/bal_model_auc.R |only R/bal_model_roc_curve.R |only R/bal_prognostic_score.R |only R/bal_qq.R |only R/check_balance.R |only R/check_ess.R |only R/check_model_auc.R |only R/check_qq.R |only R/compute_balance.R |only R/compute_balance_categorical.R |only R/data.R | 30 R/ess.R |only R/geom_calibration.R |only R/geom_ecdf.R | 49 + R/geom_mirrored_density.R |only R/geom_mirrored_histogram.R | 126 ++ R/geom_qq2.R |only R/geom_roc.R |only R/plot_balance.R |only R/plot_calibration.R |only R/plot_ess.R |only R/plot_mirror_distributions.R |only R/plot_qq.R |only R/plot_roc.R |only R/plot_stratified_residuals.R |only R/tidysmd-rexports.R | 1 R/utils-ci.R |only R/utils-documentation.R |only R/utils-group.R |only R/utils-validation.R |only R/utils.R | 292 ++++++ R/zzz.R |only README.md | 135 ++- build |only data/nhefs_weights.rda |binary man/add_ess_header.Rd |only man/autoplot-halfmoon.Rd |only man/bal_corr.Rd |only man/bal_energy.Rd |only man/bal_ess.Rd |only man/bal_ks.Rd |only man/bal_model_auc.Rd |only man/bal_model_roc_curve.Rd |only man/bal_prognostic_score.Rd |only man/bal_qq.Rd |only man/bal_smd.Rd |only man/bal_vr.Rd |only man/balance_params.Rd |only man/calculate_normal_ci.Rd |only man/calculate_prop_ci.Rd |only man/check_balance.Rd |only man/check_ess.Rd |only man/check_model_auc.Rd |only man/check_model_calibration.Rd |only man/check_model_roc_curve.Rd |only man/check_params.Rd |only man/check_qq.Rd |only man/ess.Rd |only man/figures/README-balance-example-1.png |only man/figures/README-calibration-example-1.png |only man/figures/README-example-1.png |binary man/figures/README-example-2.png |binary man/figures/README-example-3.png |binary man/figures/README-qq-example-1.png |only man/figures/README-roc-example-1.png |only man/figures/README-roc-example-2.png |only man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/geom_calibration.Rd |only man/geom_ecdf.Rd | 105 ++ man/geom_mirror_density.Rd |only man/geom_mirror_histogram.Rd | 71 + man/geom_qq2.Rd |only man/geom_roc.Rd |only man/get_z_score.Rd |only man/ggplot2_params.Rd |only man/nhefs_weights.Rd | 30 man/plot-halfmoon.Rd |only man/plot_balance.Rd |only man/plot_ess.Rd |only man/plot_mirror_distributions.Rd |only man/plot_model_auc.Rd |only man/plot_model_calibration.Rd |only man/plot_model_roc_curve.Rd |only man/plot_qq.Rd |only man/plot_stratified_residuals.Rd |only man/stat_qq2.Rd |only man/stat_roc.Rd |only man/treatment_param.Rd |only man/weighted_quantile.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/add_ess_header.md |only tests/testthat/_snaps/autoplot-methods |only tests/testthat/_snaps/bal_model_auc.md |only tests/testthat/_snaps/bal_model_roc_curve.md |only tests/testthat/_snaps/bal_prognostic_score.md |only tests/testthat/_snaps/bal_qq.md |only tests/testthat/_snaps/check_balance.md |only tests/testthat/_snaps/check_ess.md |only tests/testthat/_snaps/check_model_auc.md |only tests/testthat/_snaps/compute_balance.md |only tests/testthat/_snaps/compute_balance_categorical.md |only tests/testthat/_snaps/compute_qq.md |only tests/testthat/_snaps/error-messages.md |only tests/testthat/_snaps/geom_calibration |only tests/testthat/_snaps/geom_calibration.md |only tests/testthat/_snaps/geom_mirrored_density |only tests/testthat/_snaps/geom_mirrored_density.md |only tests/testthat/_snaps/geom_mirrored_histogram.md | 12 tests/testthat/_snaps/geom_mirrored_histogram/layered-weighted-and-unweighted.svg | 438 ++++------ tests/testthat/_snaps/geom_qq2 |only tests/testthat/_snaps/geom_roc |only tests/testthat/_snaps/plot_balance |only tests/testthat/_snaps/plot_balance.md |only tests/testthat/_snaps/plot_calibration |only tests/testthat/_snaps/plot_ess |only tests/testthat/_snaps/plot_mirror_distributions |only tests/testthat/_snaps/plot_mirror_distributions.md |only tests/testthat/_snaps/plot_qq |only tests/testthat/_snaps/plot_qq.md |only tests/testthat/_snaps/plot_roc |only tests/testthat/_snaps/plot_roc.md |only tests/testthat/_snaps/plot_stratified_residuals |only tests/testthat/_snaps/plot_stratified_residuals.md |only tests/testthat/helper-snapshot.R |only tests/testthat/helper-suppress-warnings.R |only tests/testthat/helper-vdiffr.R | 4 tests/testthat/test-add_ess_header.R |only tests/testthat/test-autoplot-methods.R |only tests/testthat/test-bal_ess.R |only tests/testthat/test-bal_model_auc.R |only tests/testthat/test-bal_model_roc_curve.R |only tests/testthat/test-bal_prognostic_score.R |only tests/testthat/test-bal_qq.R |only tests/testthat/test-check_balance.R |only tests/testthat/test-check_balance_interactions.R |only tests/testthat/test-check_ess.R |only tests/testthat/test-check_model_auc.R |only tests/testthat/test-compute_balance.R |only tests/testthat/test-compute_balance_categorical.R |only tests/testthat/test-compute_qq.R |only tests/testthat/test-error-messages.R |only tests/testthat/test-ess.R |only tests/testthat/test-extract_weight_data.R |only tests/testthat/test-geom_calibration.R |only tests/testthat/test-geom_ecdf.R | 2 tests/testthat/test-geom_mirrored_density.R |only tests/testthat/test-geom_mirrored_histogram.R | 12 tests/testthat/test-geom_qq2.R |only tests/testthat/test-geom_roc.R |only tests/testthat/test-numeric-psw-equivalence.R |only tests/testthat/test-plot_balance.R |only tests/testthat/test-plot_calibration.R |only tests/testthat/test-plot_ess.R |only tests/testthat/test-plot_mirror_distributions.R |only tests/testthat/test-plot_qq.R |only tests/testthat/test-plot_roc.R |only tests/testthat/test-plot_stratified_residuals.R |only tests/testthat/test-utils-ci.R |only 167 files changed, 1343 insertions(+), 373 deletions(-)
Title: Confirmatory Adaptive Clinical Trial Design and Analysis
Description: Design and analysis of confirmatory adaptive clinical trials with continuous, binary, and survival endpoints according to the methods described in the monograph by Wassmer and Brannath (2025) <doi:10.1007/978-3-031-89669-9>. This includes classical group sequential as well as multi-stage adaptive hypotheses tests that are based on the combination testing principle.
Author: Gernot Wassmer [aut] ,
Friedrich Pahlke [aut, cre] ,
Till Jensen [ctb],
Daniel Sabanes Bove [ctb] ,
Stephen Schueuerhuis [ctb] ,
Tobias Muetze [ctb] ,
RPACT GmbH [cph, fnd]
Maintainer: Friedrich Pahlke <friedrich.pahlke@rpact.com>
Diff between rpact versions 4.3.0 dated 2025-12-16 and 4.4.0 dated 2026-03-04
DESCRIPTION | 24 MD5 | 161 +++--- NAMESPACE | 8 NEWS.md | 39 + R/RcppExports.R | 632 ++++++++++++++++++++++++++ R/class_analysis_dataset.R | 253 +++++----- R/class_analysis_results.R | 207 ++++---- R/class_analysis_stage_results.R | 141 ++--- R/class_core_parameter_set.R | 478 ++++++++++--------- R/class_core_plot_settings.R | 27 - R/class_design.R | 73 +-- R/class_design_plan.R | 100 +--- R/class_design_power_and_asn.R | 19 R/class_design_set.R | 215 ++++---- R/class_dictionary.R | 14 R/class_event_probabilities.R | 88 +-- R/class_simulation_results.R | 64 +- R/class_summary.R | 71 +- R/class_time.R | 331 +++++++------ R/f_analysis_base.R | 101 +--- R/f_analysis_base_means.R | 91 +-- R/f_analysis_base_rates.R | 131 +---- R/f_analysis_base_survival.R | 77 +-- R/f_analysis_boundary_recalculation.R | 30 - R/f_analysis_enrichment.R | 52 +- R/f_analysis_enrichment_means.R | 365 +++++++-------- R/f_analysis_enrichment_rates.R | 443 ++++++++++-------- R/f_analysis_enrichment_survival.R | 384 ++++++++------- R/f_analysis_multiarm.R | 16 R/f_analysis_multiarm_means.R | 294 ++++++------ R/f_analysis_multiarm_rates.R | 55 +- R/f_analysis_multiarm_survival.R | 25 - R/f_analysis_utilities.R | 78 +-- R/f_as251.R | 4 R/f_core_assertions.R | 459 +++++++++++-------- R/f_core_constants.R | 14 R/f_core_output_formats.R | 118 ++-- R/f_core_plot.R | 299 ++++++------ R/f_core_utilities.R | 111 +--- R/f_design_fisher_combination_test.R | 109 ++-- R/f_design_futility_bounds.R | 4 R/f_design_general_utilities.R | 144 +++++ R/f_design_group_sequential.R | 200 ++++---- R/f_design_plan_counts.R | 104 ++-- R/f_design_plan_means.R | 35 - R/f_design_plan_plot.R | 258 +++++----- R/f_design_plan_rates.R | 74 +-- R/f_design_plan_survival.R | 227 +++++---- R/f_design_plan_utilities.R | 6 R/f_io_utilities.R |only R/f_logger.R | 4 R/f_object_r_code.R | 36 - R/f_parameter_set_utilities.R | 17 R/f_quality_assurance.R | 409 +++++++++++----- R/f_simulation_base_counts.R | 22 R/f_simulation_base_means.R | 39 - R/f_simulation_base_rates.R | 54 +- R/f_simulation_base_survival.R | 64 +- R/f_simulation_calc_subjects_function.R | 16 R/f_simulation_enrichment.R | 157 +++--- R/f_simulation_enrichment_means.R | 151 +++--- R/f_simulation_enrichment_rates.R | 150 +++--- R/f_simulation_enrichment_survival.R | 135 ++--- R/f_simulation_multiarm.R | 190 ++++--- R/f_simulation_multiarm_means.R | 11 R/f_simulation_multiarm_rates.R | 25 - R/f_simulation_multiarm_survival.R | 26 - R/f_simulation_performance_score.R | 9 R/f_simulation_plot.R | 100 ++-- R/f_simulation_utilities.R | 96 ++- R/parameter_descriptions.R | 38 - R/pkgname.R | 29 - inst/CITATION | 63 +- inst/WORDLIST | 174 ++++--- inst/doc/rpact_getting_started.html | 4 inst/tests/META | 2 man/fetch.ParameterSet.Rd | 2 man/readKeyValueFile.Rd |only man/rpact.Rd | 2 man/testPackage.Rd | 15 man/utilitiesForSurvivalTrials.Rd | 27 - man/writeKeyValueFile.Rd |only src/f_design_group_sequential.cpp | 770 ++++++++++++++++++++++++++++---- 83 files changed, 6042 insertions(+), 4048 deletions(-)
Title: Accessing the Official 'Google Knowledge Graph' API
Description: A simple way to interact with and extract data from
the official 'Google Knowledge Graph' API <https://developers.google.com/knowledge-graph/>.
Author: Ricardo Correia [aut, cre]
Maintainer: Ricardo Correia <rahc85@gmail.com>
Diff between gkgraphR versions 1.0.2 dated 2021-03-01 and 1.0.3 dated 2026-03-04
DESCRIPTION | 11 MD5 | 12 NEWS.md | 20 - README.md | 101 +++--- build/vignette.rds |binary inst/doc/gkgraphR.R | 76 ++-- inst/doc/gkgraphR.html | 808 ++++++++++++++++++++++++++----------------------- 7 files changed, 539 insertions(+), 489 deletions(-)
Title: Read 'CEP' and Legacy 'CANOCO' Files
Description: Read Condensed Cornell Ecology Program ('CEP') and legacy
'CANOCO' files into R data frames.
Author: Jari Oksanen [aut, cre] ,
Gavin L. Simpson [aut]
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between cepreader versions 1.2-2 dated 2023-06-25 and 1.3-0 dated 2026-03-04
DESCRIPTION | 11 ++++---- MD5 | 15 ++++++------ R/readCEP.R | 42 ++++++++++++++++++++++------------ inst/NEWS.md | 10 ++++++++ inst/README.md |only man/readCEP.Rd | 33 +++++++++++++++++--------- src/Makefile | 1 src/Makefile.win | 3 -- tests/Examples/cepreader-Ex.Rout.save | 19 +++++++++++---- 9 files changed, 90 insertions(+), 44 deletions(-)
Title: Tidy and Streamlined Metabolomics Data Workflows
Description: Facilitate tasks typically encountered during metabolomics data analysis including data import, filtering, missing value imputation (Stacklies et al. (2007) <doi:10.1093/bioinformatics/btm069>, Stekhoven et al. (2012) <doi:10.1093/bioinformatics/btr597>, Tibshirani et al. (2017) <doi:10.18129/B9.BIOC.IMPUTE>, Troyanskaya et al. (2001) <doi:10.1093/bioinformatics/17.6.520>), normalization (Bolstad et al. (2003) <doi:10.1093/bioinformatics/19.2.185>, Dieterle et al. (2006) <doi:10.1021/ac051632c>, Zhao et al. (2020) <doi:10.1038/s41598-020-72664-6>) transformation, centering and scaling (Van Den Berg et al. (2006) <doi:10.1186/1471-2164-7-142>) as well as statistical tests and plotting. 'metamorphr' introduces a tidy (Wickham et al. (2019) <doi:10.21105/joss.01686>) format for metabolomics data and is designed to make it easier to build elaborate analysis workflows and to integrate them with 'tidyverse' packages including 'dplyr' and [...truncated...]
Author: Yannik Schermer [aut, cre, cph]
Maintainer: Yannik Schermer <yannik.schermer@chem.rptu.de>
Diff between metamorphr versions 0.2.0 dated 2025-10-09 and 0.3.0 dated 2026-03-04
DESCRIPTION | 18 ++++----- MD5 | 57 +++++++++++++++++------------- NAMESPACE | 3 + NEWS.md | 12 +++++- R/internal_functions.R | 14 ++++++- R/io.R | 7 ++- R/metamorphr-package.R | 1 R/misc.R | 33 ----------------- R/msn.R |only R/normalize.R | 2 - R/sysdata.rda |binary README.md | 6 +-- inst/doc/conjugate-screening.R | 2 - inst/doc/conjugate-screening.Rmd | 4 +- inst/doc/conjugate-screening.html | 10 ++--- inst/doc/metamorphr.html | 2 - man/calc_neutral_loss.Rd | 6 ++- man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/figures/logo.png |binary man/metamorphr-package.Rd | 1 man/msn_calc_nl.Rd |only man/msn_scale.Rd |only man/normalize_pqn.Rd | 2 - man/read_mgf.Rd | 7 ++- tests/testthat/data/test_read_mgf_tab.mgf |only tests/testthat/test-calc_neutral_loss.R | 14 +++++-- tests/testthat/test-filter_neutral_loss.R | 12 +++--- tests/testthat/test-msn_scale.R |only tests/testthat/test-normalize_pqn.R | 41 +++++++++------------ tests/testthat/test-read_mgf.R | 7 +++ vignettes/conjugate-screening.Rmd | 4 +- 34 files changed, 141 insertions(+), 124 deletions(-)
Title: Credential Chain for Seamless 'OAuth 2.0' Authentication to
'Azure Services'
Description: Implements a credential chain for 'Azure OAuth 2.0' authentication
based on the package 'httr2''s 'OAuth' framework. Sequentially attempts authentication
methods until one succeeds. During development allows interactive
browser-based flows ('Device Code' and 'Auth Code' flows) and non-interactive
flow ('Client Secret') in batch mode.
Author: Pedro Baltazar [aut, cre]
Maintainer: Pedro Baltazar <pedrobtz@gmail.com>
Diff between azr versions 0.3.0 dated 2026-02-17 and 0.3.1 dated 2026-03-04
DESCRIPTION | 6 MD5 | 38 ++-- NEWS.md | 4 R/credential-azure-cli.R | 199 +++++++++++------------ R/credential-interactive.R | 339 +++++++++++++++++++++++++--------------- R/credential.R | 10 - R/default-credential.R | 6 R/defaults.R | 4 R/zzz.R | 2 man/AuthCodeCredential.Rd | 51 ------ man/AzureCLICredential.Rd | 22 ++ man/DeviceCodeCredential.Rd | 51 ------ man/InteractiveCredential.Rd | 112 +++++++++++++ man/az_cli_account_show.Rd | 13 - man/az_cli_get_cached_token.Rd | 15 - man/az_cli_get_token.Rd | 18 -- man/az_cli_is_login.Rd | 11 - man/az_cli_login.Rd | 13 - man/az_cli_logout.Rd | 7 man/default_credential_chain.Rd | 2 20 files changed, 499 insertions(+), 424 deletions(-)
Title: Access Data from the 'Kolada' Database
Description: Methods for downloading and processing data and metadata from 'Kolada', the official Swedish regions and municipalities database <https://www.kolada.se/>.
Author: Love Hansson [aut, cre, cph]
Maintainer: Love Hansson <love.hansson@gmail.com>
Diff between rKolada versions 0.2.3 dated 2024-05-14 and 0.3.0 dated 2026-03-04
DESCRIPTION | 19 MD5 | 123 +- NAMESPACE | 72 - NEWS.md | 109 +- R/aaa_utils.R | 196 ++-- R/available.R | 66 - R/data.R | 705 ++++++++------- R/glue.R | 126 +- R/higher_order_metadata.R | 48 - R/kpi.R | 476 ++++------ R/kpi_groups.R | 288 +++--- R/metadata.R | 611 +++++++------ R/municipality.R | 364 +++----- R/municipality_grp.R | 284 +++--- R/ou.R | 90 - R/rKolada.R | 26 R/table_specs.R | 10 README.md | 80 - build/vignette.rds |binary inst/doc/a-quickstart-rkolada.R | 142 +-- inst/doc/a-quickstart-rkolada.Rmd | 288 +++--- inst/doc/a-quickstart-rkolada.html | 1088 ++++++++++++------------ inst/doc/introduction-to-rkolada.R | 228 ++--- inst/doc/introduction-to-rkolada.Rmd | 448 ++++----- inst/doc/introduction-to-rkolada.html | 1536 +++++++++++++++++----------------- man/allowed_entities.Rd | 30 man/compose_data_query.Rd | 98 +- man/compose_metadata_query.Rd | 87 + man/generate_kpi_metadata.Rd | 34 man/get_kpi.Rd | 194 ++-- man/get_metadata.Rd | 131 +- man/get_values.Rd | 156 +-- man/kolada_available.Rd | 24 man/kpi_bind_keywords.Rd | 64 - man/kpi_describe.Rd | 72 - man/kpi_extract_ids.Rd | 80 - man/kpi_grp_describe.Rd | 72 - man/kpi_grp_extract_ids.Rd | 40 man/kpi_grp_search.Rd | 80 - man/kpi_grp_unnest.Rd | 76 - man/kpi_minimize.Rd | 55 - man/kpi_search.Rd | 88 - man/municipality_extract_ids.Rd | 62 - man/municipality_grp_describe.Rd | 74 - man/municipality_grp_extract_ids.Rd | 40 man/municipality_grp_search.Rd | 50 - man/municipality_grp_unnest.Rd | 80 - man/municipality_id_to_name.Rd | 76 - man/municipality_name_to_id.Rd | 78 - man/municipality_search.Rd | 86 - man/ou_search.Rd | 86 - man/pipe.Rd | 26 man/values_legend.Rd | 48 - man/values_minimize.Rd | 64 - tests/testthat.R | 8 tests/testthat/test-api-live.R |only tests/testthat/test-api-mocked.R |only tests/testthat/test-data-helpers.R |only tests/testthat/test-groups.R |only tests/testthat/test-kpi.R |only tests/testthat/test-municipality.R |only tests/testthat/test-query-composers.R |only tests/testthat/test-search.R |only tests/testthat/test-utils.R |only tests/testthat/test_api.R | 12 vignettes/a-quickstart-rkolada.Rmd | 288 +++--- vignettes/introduction-to-rkolada.Rmd | 448 ++++----- 67 files changed, 5240 insertions(+), 5090 deletions(-)
Title: Holistic Multimodel Domain Analysis for Exploratory Machine
Learning
Description: Holistic Multimodel Domain Analysis (HMDA) is a robust and transparent framework designed for exploratory machine learning research, aiming to enhance the process of feature assessment and selection. HMDA addresses key limitations of traditional machine learning methods by evaluating the consistency across multiple high-performing models within a fine-tuned modeling grid, thereby improving the interpretability and reliability of feature importance assessments. Specifically, it computes Weighted Mean SHapley Additive exPlanations (WMSHAP), which aggregate feature contributions from multiple models based on weighted performance metrics. HMDA also provides confidence intervals to demonstrate the stability of these feature importance estimates. This framework is particularly beneficial for analyzing complex, multidimensional datasets common in health research, supporting reliable exploration of mental health outcomes such as suicidal ideation, suicide attempts, and other psychological cond [...truncated...]
Author: E. F. Haghish [aut, cre, cph]
Maintainer: E. F. Haghish <haghish@hotmail.com>
Diff between HMDA versions 0.2.0 dated 2026-02-16 and 0.3.0 dated 2026-03-04
DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++---------- NAMESPACE | 2 ++ R/hmda.best.models.R | 10 +++++----- R/hmda.domain.R | 7 +++---- R/hmda.grid.R | 2 ++ R/hmda.plot.R | 16 ++++++++-------- R/hmda.plot.metrics.R | 44 +++++++++++++++++++++++--------------------- R/hmda.row.plot.R |only man/hmda.best.models.Rd | 10 +++++----- man/hmda.domain.Rd | 7 +++---- man/hmda.plot.metrics.Rd | 31 +++++++++++++++++-------------- man/hmda.row.plot.Rd |only 13 files changed, 84 insertions(+), 75 deletions(-)
Title: Interface for the 'Finnish Biodiversity Information Facility'
API
Description: A programmatic interface to the 'Finnish Biodiversity Information
Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates
Finnish biodiversity data from multiple sources in a single open access
portal for researchers, citizen scientists, industry and government.
'FinBIF' allows users of biodiversity information to find, access, combine
and visualise data on Finnish plants, animals and microorganisms. The
'finbif' package makes the publicly available data in 'FinBIF' easily
accessible to programmers. Biodiversity information is available on taxonomy
and taxon occurrence. Occurrence data can be filtered by taxon, time,
location and other variables. The data accessed are conveniently
preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph] ,
Finnish Biodiversity Information Facility [cph] ,
William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>
Diff between finbif versions 0.9.12 dated 2026-01-27 and 0.9.13 dated 2026-03-04
DESCRIPTION | 8 MD5 | 86 NAMESPACE | 15 NEWS.md | 22 R/api_get.R | 123 R/finbif-package.R | 2 R/finbif_check_taxa.R | 4 R/finbif_collections.R | 14 R/finbif_occurrence.R | 10 R/finbif_occurrence_load.R | 37 R/finbif_records.R | 2 R/finbif_request_token.R | 58 R/finbif_taxa.R | 2 R/sysdata.R | 13 R/utils.R | 23 R/zzz.R | 2 README.md | 2 man/finbif-package.Rd | 2 tests/fixtures/finbif_cache_db_timeout.yml | 100 tests/fixtures/finbif_cache_file_timeout.yml | 100 tests/fixtures/finbif_cache_timeout.yml | 100 tests/fixtures/finbif_check_taxa.yml | 36 tests/fixtures/finbif_collections.yml | 2987 +++++-- tests/fixtures/finbif_informal_groups.yml | 6 tests/fixtures/finbif_last_mod1.yml | 8 tests/fixtures/finbif_last_mod2.yml | 8 tests/fixtures/finbif_last_mod3.yml | 8 tests/fixtures/finbif_metadata.yml | 482 - tests/fixtures/finbif_occurrence.yml | 3884 ++++++---- tests/fixtures/finbif_occurrence_aggregate.yml | 101 tests/fixtures/finbif_occurrence_api_error.yml | 16 tests/fixtures/finbif_occurrence_compute_var_from_id_zero_rows.yml | 3027 +++++-- tests/fixtures/finbif_occurrence_dates.yml | 217 tests/fixtures/finbif_occurrence_load.yml | 392 - tests/fixtures/finbif_occurrence_print.yml | 24 tests/fixtures/finbif_occurrence_select_local_area.yml | 8 tests/fixtures/finbif_taxa.yml | 40 tests/testthat/_snaps/caching.md | 93 tests/testthat/_snaps/finbif_collections.md | 546 - tests/testthat/_snaps/finbif_metadata.md | 1 tests/testthat/_snaps/finbif_occurrence.md | 110 tests/testthat/_snaps/finbif_occurrence_load.md | 6 tests/testthat/test-finbif_request_token.R | 29 tests/testthat/test-finbif_taxa.R | 6 44 files changed, 8493 insertions(+), 4267 deletions(-)
Title: Optimal Histogram Binning Using Shimazaki-Shinomoto Method
Description: Implements the Shimazaki-Shinomoto method for optimizing the
bin width of a histogram. This method minimizes the mean integrated
squared error (MISE) and features a 'C++' backend for high performance
and shift-averaging to remove edge-position bias. Ideally suits for
time-dependent rate estimation and identifying intrinsic data
structures. Supports both 1D and 2D data distributions. For more
details see Shimazaki and Shinomoto (2007) "A Method for Selecting the
Bin Size of a Time Histogram" <doi:10.1162/neco.2007.19.6.1503>.
Author: Daniil Popov [aut, cre]
Maintainer: Daniil Popov <popov.daniil@gmail.com>
Diff between sshist versions 0.1.2 dated 2026-02-13 and 0.1.3 dated 2026-03-04
DESCRIPTION | 21 +++++++++++---------- MD5 | 14 +++++++------- NEWS.md | 15 +++++++++++++++ R/sshist.R | 18 +++++++++--------- README.md | 14 +++++++++++--- inst/doc/introduction.html | 12 ++++++------ man/figures/README-example-1d-1.png |binary man/figures/README-example-1d-ggplot-1.png |binary 8 files changed, 59 insertions(+), 35 deletions(-)
Title: A 'HTTP' Server Graphics Device
Description: A graphics device for R that is accessible via network protocols.
This package was created to make it easier to embed live R graphics in
integrated development environments and other applications.
The included 'HTML/JavaScript' client (plot viewer) aims to provide a better overall user experience when dealing with R graphics.
The device asynchronously serves graphics via 'HTTP' and 'WebSockets'.
Author: Florian Rupprecht [aut, cre] ,
Kun Ren [ctb],
Jeroen Ooms [ctb]
Maintainer: Florian Rupprecht <floruppr@gmail.com>
This is a re-admission after prior archival of version 2.0.4 dated 2025-03-15
Diff between httpgd versions 2.0.4 dated 2025-03-15 and 2.1.4 dated 2026-03-04
httpgd-2.0.4/httpgd/cleanup |only httpgd-2.0.4/httpgd/configure |only httpgd-2.0.4/httpgd/configure.win |only httpgd-2.0.4/httpgd/inst/licenses/belle-MIT.txt |only httpgd-2.0.4/httpgd/inst/licenses/material-design-icons-Apache-2-0.txt |only httpgd-2.0.4/httpgd/inst/www/18c7a89e30a180cb.svg |only httpgd-2.0.4/httpgd/inst/www/199bb9cab408c177.png |only httpgd-2.0.4/httpgd/inst/www/e13eb9df618a2fbe.png |only httpgd-2.0.4/httpgd/inst/www/style.css |only httpgd-2.0.4/httpgd/src/Makevars.in |only httpgd-2.0.4/httpgd/src/Makevars.ucrt |only httpgd-2.0.4/httpgd/tools |only httpgd-2.1.4/httpgd/DESCRIPTION | 21 httpgd-2.1.4/httpgd/LICENSE.note | 13 httpgd-2.1.4/httpgd/MD5 | 183 - httpgd-2.1.4/httpgd/NAMESPACE | 42 httpgd-2.1.4/httpgd/NEWS.md | 194 - httpgd-2.1.4/httpgd/R/httpgd-package.R | 34 httpgd-2.1.4/httpgd/R/httpgd.R | 926 ++--- httpgd-2.1.4/httpgd/README.md | 146 httpgd-2.1.4/httpgd/build/vignette.rds |binary httpgd-2.1.4/httpgd/inst/doc/a00_installation.Rmd | 55 httpgd-2.1.4/httpgd/inst/doc/a00_installation.html | 749 ++-- httpgd-2.1.4/httpgd/inst/doc/a01_how-to-get-started.Rmd | 113 httpgd-2.1.4/httpgd/inst/doc/a01_how-to-get-started.html | 869 ++--- httpgd-2.1.4/httpgd/inst/doc/b01_vscode.Rmd | 28 httpgd-2.1.4/httpgd/inst/doc/b01_vscode.html | 533 +-- httpgd-2.1.4/httpgd/inst/doc/b02_rstudio.Rmd | 109 httpgd-2.1.4/httpgd/inst/doc/b02_rstudio.html | 790 ++-- httpgd-2.1.4/httpgd/inst/doc/b03_docker.Rmd | 164 httpgd-2.1.4/httpgd/inst/doc/b03_docker.html | 847 ++-- httpgd-2.1.4/httpgd/inst/doc/c01_httpgd-api.R | 20 httpgd-2.1.4/httpgd/inst/doc/c01_httpgd-api.Rmd | 413 +- httpgd-2.1.4/httpgd/inst/doc/c01_httpgd-api.html | 1703 ++++------ httpgd-2.1.4/httpgd/inst/licenses/CrowCpp-BSD-3-Clause.txt | 64 httpgd-2.1.4/httpgd/inst/www/bundle.js | 15 httpgd-2.1.4/httpgd/inst/www/favicon-16x16.png |only httpgd-2.1.4/httpgd/inst/www/favicon-32x32.png |only httpgd-2.1.4/httpgd/inst/www/favicon.svg |only httpgd-2.1.4/httpgd/inst/www/index.css |only httpgd-2.1.4/httpgd/inst/www/index.html | 18 httpgd-2.1.4/httpgd/man/figures/httpgd_icon.svg | 666 +-- httpgd-2.1.4/httpgd/man/figures/httpgd_logo.svg | 1046 +++--- httpgd-2.1.4/httpgd/man/figures/httpgd_structure.svg | 1340 +++---- httpgd-2.1.4/httpgd/man/hgd.Rd | 194 - 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Title: Tools to Use and Explore the 'BioTIME' Database
Description: The 'BioTIME' database was first published in
2018 and inspired ideas, questions, project and research
article. To make it even more accessible, an R package
was created.
The 'BioTIMEr' package provides tools designed to interact with the
'BioTIME' database. The functions provided include the 'BioTIME' recommended
methods for preparing (gridding and rarefaction) time series data, a
selection of standard biodiversity metrics (including species richness,
numerical abundance and exponential Shannon) alongside examples on how to
display change over time. It also includes a sample subset of both the query
and meta data, the full versions of which are freely available on the 'BioTIME'
website <https://biotime.st-andrews.ac.uk/home.php>.
Author: Alban Sagouis [aut, cre] ,
Faye Moyes [aut] ,
Ines S. Martins [aut, rev] ,
Shane A. Blowes [ctb] ,
Viviana Brambilla [ctb] ,
Cher F. Y. Chow [ctb] ,
Ada Fontrodona-Eslava [ctb] ,
Laura Antao [ctb, rev] ,
Jonathan M. Chase [fnd] ,
Maria Dornelas [fnd, [...truncated...]
Maintainer: Alban Sagouis <alban.sagouis@idiv.de>
Diff between BioTIMEr versions 0.3.1 dated 2026-02-10 and 0.3.2 dated 2026-03-04
DESCRIPTION | 9 - MD5 | 18 +- NEWS.md | 8 - R/data.R | 2 data/BTsubset_data.RData |binary data/BTsubset_meta.RData |binary inst/doc/introduction.html | 244 +++++++++++++++++++++++++++------ man/BTsubset_meta.Rd | 2 tests/testthat/testdata/data-meta.rds |binary tests/testthat/testdata/data-query.rds |binary 10 files changed, 224 insertions(+), 59 deletions(-)
Title: Regression Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as linear regression, penalized regression, k-nearest neighbors, decision trees, ada boosting, extreme gradient boosting, random forest, neural networks, deep learning and support vector machines.
Author: Oldemar Rodriguez [aut, cre],
Andres Navarro D. [ctb, prg],
Diego Jimenez A. [ctb, prg],
Ariel Arroyo S. [ctb, prg],
Joseline Quiros M. [ctb, prg],
Alejandro Vargas V. [ctb, prg],
Jennifer Lobo V. [ctb, prg]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
This is a re-admission after prior archival of version 4.0.7 dated 2025-12-22
Diff between regressoR versions 4.0.7 dated 2025-12-22 and 4.0.8 dated 2026-03-04
DESCRIPTION | 6 MD5 | 16 R/mod_ind_nuevos.R | 1684 +++++++++++++++++++++++------------------------ R/mod_ind_nuevos_utils.R | 114 +-- R/mod_information_page.R | 76 +- R/mod_model_boost_fct.R | 240 +++--- R/mod_model_rndf_fct.R | 308 ++++---- R/regressoR.R | 4 man/regressoR.Rd | 4 9 files changed, 1226 insertions(+), 1226 deletions(-)
Title: Predictive Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as K-Nearest Neighbors, Decision Trees, ADA Boosting, Extreme Gradient Boosting, Random Forest, Neural Networks, Deep Learning, Support Vector Machines and Bayesian Methods.
Author: Oldemar Rodriguez [aut, cre],
Diego Jimenez [ctb, prg],
Andres Navarro [ctb, prg],
Jennifer Lobo [ctb, prg]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
This is a re-admission after prior archival of version 4.1.6 dated 2025-12-22
Diff between predictoR versions 4.1.6 dated 2025-12-22 and 4.1.7 dated 2026-03-04
DESCRIPTION | 6 MD5 | 8 R/mod_models_utils.R | 1124 +++++++++++++++++++++++++-------------------------- R/predictoR.R | 4 man/predictoR.Rd | 4 5 files changed, 573 insertions(+), 573 deletions(-)
Title: Nonparametric Methods for Generating High Quality Comparative
Effectiveness Evidence
Description: Implements novel nonparametric approaches to address
biases and confounding when comparing treatments or exposures in
observational studies of outcomes. While designed and appropriate for use
in studies involving medicine and the life sciences, the package can be
used in other situations involving outcomes with multiple confounders.
The package implements a family of methods for non-parametric bias correction
when comparing treatments in observational studies, including survival
analysis settings, where competing risks and/or censoring may be present.
The approach extends to bias-corrected personalized predictions of treatment
outcome differences, and analysis of heterogeneity of treatment effect-sizes
across patient subgroups. For further details, please see:
Lauve NR, Nelson SJ, Young SS, Obenchain RL, Lambert CG. LocalControl:
An R Package for Comparative Safety and Effectiveness Research.
Journal of Statistical Software. 2020. p. 1–32. Available from <doi:10.18637/jss.v096.i04&g [...truncated...]
Author: Nicolas R. Lauve [aut] ,
Stuart J. Nelson [aut] ,
S. Stanley Young [aut] ,
Robert L. Obenchain [aut] ,
Melania Pintilie [ctb],
Martin Kutz [ctb],
Christophe G. Lambert [aut, cre]
Maintainer: Christophe G. Lambert <cglambert@salud.unm.edu>
Diff between LocalControl versions 1.1.4 dated 2024-09-04 and 1.1.7 dated 2026-03-04
LocalControl-1.1.4/LocalControl/inst/doc/LocalControl-jss-2020.R |only LocalControl-1.1.4/LocalControl/inst/doc/LocalControl-jss-2020.Rnw |only LocalControl-1.1.4/LocalControl/vignettes/LocalControl-jss-2020.Rnw |only LocalControl-1.1.4/LocalControl/vignettes/LocalControl.bib |only LocalControl-1.1.4/LocalControl/vignettes/calcs |only LocalControl-1.1.7/LocalControl/DESCRIPTION | 25 ++-- LocalControl-1.1.7/LocalControl/MD5 | 61 +++++----- LocalControl-1.1.7/LocalControl/NEWS.md | 24 +++ LocalControl-1.1.7/LocalControl/build/vignette.rds |binary LocalControl-1.1.7/LocalControl/inst/doc/LocalControl-jss-2020.pdf |binary LocalControl-1.1.7/LocalControl/inst/doc/LocalControl-jss-2020.pdf.asis |only LocalControl-1.1.7/LocalControl/inst/vignette-source |only LocalControl-1.1.7/LocalControl/src/LocalControl.cpp | 5 LocalControl-1.1.7/LocalControl/vignettes/LocalControl-jss-2020.pdf.asis |only 14 files changed, 71 insertions(+), 44 deletions(-)
Title: Inflation Adjustment for Historical Currency Values
Description: Convert historical monetary values into their present-day equivalents
using bundled CPI (Consumer Price Index) and GDP deflator data sourced from the
World Bank Development Indicators. Supports British pounds (GBP), Australian
dollars (AUD), US dollars (USD), Euro (EUR), Canadian dollars (CAD), Japanese
yen (JPY), Chinese yuan (CNY), Swiss francs (CHF), New Zealand dollars (NZD),
Indian rupees (INR), South Korean won (KRW), Brazilian reais (BRL), and
Norwegian krone (NOK). Currency codes and country names are both accepted as
input.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between inflateR versions 0.1.1 dated 2026-03-03 and 0.1.3 dated 2026-03-04
DESCRIPTION | 20 +-- MD5 | 58 ++++++++- NAMESPACE | 2 NEWS.md | 12 ++ R/adjust.R | 22 ++- R/adjust_real.R |only R/data.R | 254 +++++++++++++++++++++++++++++++++++++++++++ R/globals.R | 6 - R/historical_real.R |only R/historical_value.R | 17 ++ README.md | 281 ++++++++++++++++++++---------------------------- data/aud_gdp_def.rda |only data/brl_cpi.rda |only data/brl_gdp_def.rda |only data/cad_gdp_def.rda |only data/chf_gdp_def.rda |only data/cny_gdp_def.rda |only data/eur_gdp_def.rda |only data/inr_cpi.rda |only data/inr_gdp_def.rda |only data/jpy_gdp_def.rda |only data/krw_cpi.rda |only data/krw_gdp_def.rda |only data/nok_cpi.rda |only data/nok_gdp_def.rda |only data/nzd_cpi.rda |only data/nzd_gdp_def.rda |only data/uk_gdp_def.rda |only data/usd_gdp_def.rda |only man/adjust_inflation.Rd | 5 man/adjust_real.Rd |only man/aud_gdp_def.Rd |only man/brl_cpi.Rd |only man/brl_gdp_def.Rd |only man/cad_gdp_def.Rd |only man/chf_gdp_def.Rd |only man/cny_gdp_def.Rd |only man/eur_gdp_def.Rd |only man/historical_real.Rd |only man/inr_cpi.Rd |only man/inr_gdp_def.Rd |only man/jpy_gdp_def.Rd |only man/krw_cpi.Rd |only man/krw_gdp_def.Rd |only man/nok_cpi.Rd |only man/nok_gdp_def.Rd |only man/nzd_cpi.Rd |only man/nzd_gdp_def.Rd |only man/uk_gdp_def.Rd |only man/usd_gdp_def.Rd |only 50 files changed, 485 insertions(+), 192 deletions(-)
Title: Aggregated Latent Space Index for Binary, Ordinal, and
Continuous Data
Description: Provides three stability-validated pipelines for computing an
Aggregated Latent Space Index (ALSI): a binary MCA pipeline
(alsi_workflow()), an ordinal pipeline using homals alternating least
squares optimal scaling (alsi_workflow_ordinal()), and a continuous
ipsatized SVD pipeline (calsi_workflow()). All three pipelines share
a common bootstrap dual-criterion stability framework (principal angles
and Tucker congruence phi) for determining the number of dimensions
to retain before index construction. The package is designed to
complement Segmented Profile Analysis (SEPA) and is intended for
psychometric scale construction and dimensional reduction in survey
and clinical research.
Author: Se-Kang Kim [aut, cre]
Maintainer: Se-Kang Kim <se-kang.kim@bcm.edu>
Diff between alsi versions 0.1.3 dated 2026-02-19 and 0.2.0 dated 2026-03-04
alsi-0.1.3/alsi/NEWS.md |only alsi-0.1.3/alsi/R/alsi.R |only alsi-0.1.3/alsi/README.md |only alsi-0.1.3/alsi/man/dot-read_xlsx.Rd |only alsi-0.1.3/alsi/man/make_disjunctive.Rd |only alsi-0.1.3/alsi/man/mca_indicator.Rd |only alsi-0.1.3/alsi/man/summarise_matrix.Rd |only alsi-0.1.3/alsi/man/to01.Rd |only alsi-0.2.0/alsi/DESCRIPTION | 48 ++++++++++------- alsi-0.2.0/alsi/LICENSE |only alsi-0.2.0/alsi/MD5 | 54 ++++++++++++------- alsi-0.2.0/alsi/NAMESPACE | 25 ++++++++ alsi-0.2.0/alsi/R/binary.R |only alsi-0.2.0/alsi/R/continuous.R |only alsi-0.2.0/alsi/R/data.R | 53 ++++++++---------- alsi-0.2.0/alsi/R/ordinal.R |only alsi-0.2.0/alsi/R/utils.R |only alsi-0.2.0/alsi/inst |only alsi-0.2.0/alsi/man/ANR2.Rd | 56 ++++++++------------ alsi-0.2.0/alsi/man/alsi.Rd | 2 alsi-0.2.0/alsi/man/alsi_workflow.Rd | 2 alsi-0.2.0/alsi/man/alsi_workflow_ordinal.Rd |only alsi-0.2.0/alsi/man/calsi.Rd |only alsi-0.2.0/alsi/man/calsi_vs_sepa_demo.Rd |only alsi-0.2.0/alsi/man/calsi_workflow.Rd |only alsi-0.2.0/alsi/man/compare_sepa_calsi.Rd |only alsi-0.2.0/alsi/man/dot-alsi_fit_homals.Rd |only alsi-0.2.0/alsi/man/dot-alsi_make_disjunctive.Rd |only alsi-0.2.0/alsi/man/dot-alsi_mca_indicator.Rd |only alsi-0.2.0/alsi/man/dot-alsi_read_xlsx.Rd |only alsi-0.2.0/alsi/man/dot-alsi_summarise_matrix.Rd |only alsi-0.2.0/alsi/man/dot-alsi_svd_ipsatized.Rd |only alsi-0.2.0/alsi/man/dot-alsi_to01.Rd |only alsi-0.2.0/alsi/man/mca_align.Rd | 2 alsi-0.2.0/alsi/man/mca_bootstrap.Rd | 2 alsi-0.2.0/alsi/man/mca_pa.Rd | 2 alsi-0.2.0/alsi/man/plot_category_projections.Rd | 2 alsi-0.2.0/alsi/man/plot_domain_loadings.Rd |only alsi-0.2.0/alsi/man/plot_subspace_stability.Rd | 2 alsi-0.2.0/alsi/man/plot_subspace_stability_cont.Rd |only alsi-0.2.0/alsi/man/svd_align.Rd |only alsi-0.2.0/alsi/man/svd_bootstrap.Rd |only alsi-0.2.0/alsi/man/svd_pa.Rd |only alsi-0.2.0/alsi/tests |only 44 files changed, 144 insertions(+), 106 deletions(-)
Title: Interface to Swiss Parliament Web Services and the
'OpenParlData' API
Description: Provides machine-readable access to parliamentary data of the
Swiss Federal Assembly via the 'OData' interface (<https://ws.parlament.ch/odata.svc/>)
and the 'OpenParlData' REST API (<https://api.openparldata.ch>), which also
offers harmonized data for selected cantonal and municipal parliaments.
Author: David Zumbach [aut, cre],
Benjamin Gfoehler [ctb]
Maintainer: David Zumbach <david.zumbach@gfzb.ch>
Diff between swissparl versions 0.2.2 dated 2021-11-02 and 0.3.0 dated 2026-03-04
swissparl-0.2.2/swissparl/man/swissparl.Rd |only swissparl-0.3.0/swissparl/DESCRIPTION | 25 +- swissparl-0.3.0/swissparl/LICENSE |only swissparl-0.3.0/swissparl/MD5 | 46 ++-- swissparl-0.3.0/swissparl/NAMESPACE | 10 + swissparl-0.3.0/swissparl/R/get_data.R | 185 +++++++++++++++++++ swissparl-0.3.0/swissparl/R/get_glimpse.R | 36 +++ swissparl-0.3.0/swissparl/R/get_overview.R | 59 +++++- swissparl-0.3.0/swissparl/R/get_tables.R | 39 +++- swissparl-0.3.0/swissparl/R/get_variables.R | 66 +++++- swissparl-0.3.0/swissparl/R/swissparl.R | 9 swissparl-0.3.0/swissparl/R/utils_check.R | 19 + swissparl-0.3.0/swissparl/R/utils_get_data.R | 145 ++++++++++++++ swissparl-0.3.0/swissparl/man/clean_text.Rd | 52 ++--- swissparl-0.3.0/swissparl/man/get_data.Rd | 162 ++++++++-------- swissparl-0.3.0/swissparl/man/get_data2.Rd |only swissparl-0.3.0/swissparl/man/get_glimpse.Rd | 56 ++--- swissparl-0.3.0/swissparl/man/get_glimpse2.Rd |only swissparl-0.3.0/swissparl/man/get_overview.Rd | 46 ++-- swissparl-0.3.0/swissparl/man/get_overview2.Rd |only swissparl-0.3.0/swissparl/man/get_related_data2.Rd |only swissparl-0.3.0/swissparl/man/get_related_tables2.Rd |only swissparl-0.3.0/swissparl/man/get_tables.Rd | 2 swissparl-0.3.0/swissparl/man/get_tables2.Rd |only swissparl-0.3.0/swissparl/man/get_variables.Rd | 57 +++-- swissparl-0.3.0/swissparl/man/get_variables2.Rd |only swissparl-0.3.0/swissparl/man/ggswissparl.Rd | 126 ++++++------ swissparl-0.3.0/swissparl/man/seating_plan.Rd | 56 ++--- swissparl-0.3.0/swissparl/man/swissparl-package.Rd |only 29 files changed, 873 insertions(+), 323 deletions(-)
Title: Multivariate Regression Association Measure
Description: Implementations of an estimator for the multivariate regression association measure (MRAM) proposed in Shih and Chen (2026) <doi:10.1016/j.csda.2025.108288> and its associated variable selection algorithm. The MRAM quantifies the predictability of a random vector Y from a random vector X given a random vector Z. It takes the maximum value 1 if and only if Y is almost surely a measurable function of X and Z, and the minimum value of 0 if Y is conditionally independent of X given Z. The MRAM generalizes the Kendall's tau copula correlation ratio proposed in Shih and Emura (2021) <doi:10.1016/j.jmva.2020.104708> by employing the spatial sign function. The estimator is based on the nearest neighbor method, and the associated variable selection algorithm is adapted from the feature ordering by conditional independence (FOCI) algorithm of Azadkia and Chatterjee (2021) <doi:10.1214/21-AOS2073>. For further details, see the paper Shih and Chen (2026) <doi:10.1016/j.csda.20 [...truncated...]
Author: Jia-Han Shih [aut, cre],
Yi-Hau Chen [aut]
Maintainer: Jia-Han Shih <jhshih@math.nsysu.edu.tw>
Diff between MRAM versions 1.0.0 dated 2026-01-07 and 1.0.1 dated 2026-03-04
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/mram.R | 4 +++- R/vs_mram.R | 2 +- man/mram.Rd | 2 +- man/vs_mram.Rd | 2 +- 6 files changed, 14 insertions(+), 12 deletions(-)
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Author: Jari Oksanen [aut, cre],
Gavin L. Simpson [aut],
F. Guillaume Blanchet [aut],
Roeland Kindt [aut],
Pierre Legendre [aut],
Peter R. Minchin [aut],
R.B. O'Hara [aut],
Peter Solymos [aut],
M. Henry H. Stevens [aut],
Eduard Szoecs [aut],
Helene Wagner [a [...truncated...]
Maintainer: Jari Oksanen <jhoksane@gmail.com>
Diff between vegan versions 2.7-2 dated 2025-10-08 and 2.7-3 dated 2026-03-04
vegan-2.7-2/vegan/man/ordixyplot.Rd |only vegan-2.7-3/vegan/DESCRIPTION | 6 vegan-2.7-3/vegan/MD5 | 75 +-- vegan-2.7-3/vegan/NEWS.md | 55 ++ vegan-2.7-3/vegan/R/decostand.R | 37 - vegan-2.7-3/vegan/R/metaMDS.R | 7 vegan-2.7-3/vegan/R/metaMDSdist.R | 4 vegan-2.7-3/vegan/R/optspace.R | 81 ++-- vegan-2.7-3/vegan/R/ordixyplot.R | 1 vegan-2.7-3/vegan/R/permustats.R | 4 vegan-2.7-3/vegan/R/plot.poolaccum.R | 1 vegan-2.7-3/vegan/R/plot.renyi.R | 3 vegan-2.7-3/vegan/R/plot.renyiaccum.R | 3 vegan-2.7-3/vegan/R/vegdist.R | 16 vegan-2.7-3/vegan/R/wisconsin.R | 6 vegan-2.7-3/vegan/build/partial.rdb |binary vegan-2.7-3/vegan/build/vignette.rds |binary vegan-2.7-3/vegan/inst/doc/FAQ-vegan.html | 6 vegan-2.7-3/vegan/inst/doc/decision-vegan.pdf |binary vegan-2.7-3/vegan/inst/doc/diversity-vegan.pdf |binary vegan-2.7-3/vegan/inst/doc/intro-vegan.Rnw | 4 vegan-2.7-3/vegan/inst/doc/intro-vegan.pdf |binary vegan-2.7-3/vegan/inst/doc/partitioning.pdf |binary vegan-2.7-3/vegan/man/MOStest.Rd | 3 vegan-2.7-3/vegan/man/SSarrhenius.Rd | 15 vegan-2.7-3/vegan/man/decostand.Rd | 4 vegan-2.7-3/vegan/man/oecosimu.Rd | 9 vegan-2.7-3/vegan/man/optspace.Rd | 19 vegan-2.7-3/vegan/man/ordipointlabel.Rd | 12 vegan-2.7-3/vegan/man/permustats.Rd | 54 -- vegan-2.7-3/vegan/man/permutest.betadisper.Rd | 5 vegan-2.7-3/vegan/man/renyi.Rd | 35 - vegan-2.7-3/vegan/man/specpool.Rd | 16 vegan-2.7-3/vegan/man/tsallis.Rd | 13 vegan-2.7-3/vegan/man/vegan-deprecated-lattice.Rd | 106 ++++- vegan-2.7-3/vegan/man/vegdist.Rd | 8 vegan-2.7-3/vegan/src/vegdist.c | 25 - vegan-2.7-3/vegan/tests/decostand-tests.Rout.save | 438 ++++++++++------------ vegan-2.7-3/vegan/vignettes/intro-vegan.Rnw | 4 39 files changed, 586 insertions(+), 489 deletions(-)
Title: Tidy Standardized Mean Differences
Description: Tidy standardized mean differences ('SMDs'). 'tidysmd' uses
the 'smd' package to calculate standardized mean differences for
variables in a data frame, returning the results in a tidy format.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between tidysmd versions 0.2.0 dated 2023-05-26 and 0.2.1 dated 2026-03-04
DESCRIPTION | 19 - MD5 | 38 +-- NAMESPACE | 1 NEWS.md | 2 R/geom_love.R | 37 ++- R/matches.R | 3 R/tidysmd.R | 139 +++++++++-- README.md | 27 +- data/nhefs_weights.rda |binary inst/WORDLIST | 1 man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/geom_love.Rd | 16 + man/tidy_smd.Rd | 8 tests/spelling.R | 9 tests/testthat/_snaps/geom_love/geom-love-works.svg | 16 - tests/testthat/_snaps/geom_love/love-plot-works.svg | 16 - tests/testthat/test-tidysmd.R | 242 ++++++++++++++++---- 20 files changed, 444 insertions(+), 130 deletions(-)
Title: Tidy C++ Header-Only Definitions for Parts of the C API of R
Description: Core parts of the C API of R are wrapped in a C++ namespace via a set
of inline functions giving a tidier representation of the underlying data structures
and functionality using a header-only implementation without additional dependencies.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between tidyCpp versions 0.0.8 dated 2025-11-26 and 0.0.9 dated 2026-03-04
ChangeLog | 53 ++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 8 +++--- MD5 | 23 +++++++++--------- README.md | 3 +- build/partial.rdb |binary inst/NEWS.Rd | 18 +++++++++++++- inst/doc/motivation.html | 21 ++++++++-------- inst/doc/motivation.md | 16 ++++++------ inst/include/tidy/defines.h | 6 +++- inst/include/tidy/internals.h | 24 ++++++++++++------- inst/include/tidy/math.h | 2 - vignettes/motivation.md | 16 ++++++------ vignettes/update_vignette.sh |only 13 files changed, 136 insertions(+), 54 deletions(-)
Title: Interface to the 'SymEngine' Library
Description: Provides an R interface to 'SymEngine' <https://github.com/symengine/>,
a standalone 'C++' library for fast symbolic manipulation. The package has functionalities
for symbolic computation like calculating exact mathematical expressions, solving
systems of linear equations and code generation.
Author: Jialin Ma [cre, aut],
Isuru Fernando [aut],
Xin Chen [aut]
Maintainer: Jialin Ma <marlin@inventati.org>
Diff between symengine versions 0.2.10 dated 2025-04-04 and 0.2.11 dated 2026-03-04
DESCRIPTION | 6 +- MD5 | 10 ++-- build/vignette.rds |binary src/upstream.tar |binary tools/bundle_symengine_source.sh | 3 - tools/symengine_patch.diff | 94 ++++++++++++++++----------------------- 6 files changed, 48 insertions(+), 65 deletions(-)
Title: Weighted Mean SHAP and CI for Robust Feature Assessment in ML
Grid
Description: This R package introduces Weighted Mean SHapley Additive exPlanations (WMSHAP), an innovative method for calculating SHAP values for a grid of fine-tuned base-learner machine learning models as well as stacked ensembles, a method not previously available due to the common reliance on single best-performing models. By integrating the weighted mean SHAP values from individual base-learners comprising the ensemble or individual base-learners in a tuning grid search, the package weights SHAP contributions according to each model's performance, assessed by multiple either R squared (for both regression and classification models). alternatively, this software also offers weighting SHAP values based on the area under the precision-recall curve (AUCPR), the area under the curve (AUC), and F2 measures for binary classifiers. It further extends this framework to implement weighted confidence intervals for weighted mean SHAP values, offering a more comprehensive and robust feature importance eval [...truncated...]
Author: E. F. Haghish [aut, cre, cph]
Maintainer: E. F. Haghish <haghish@hotmail.com>
Diff between shapley versions 0.6.0 dated 2026-02-13 and 0.7.0 dated 2026-03-04
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/shapley.domain.R | 6 +++--- R/shapley.domain.test.R | 2 +- R/shapley.feature.test.R | 2 +- R/shapley.row.plot.R | 30 ++++++++++++++++++++++++++++-- man/shapley.row.plot.Rd | 15 ++++++++++++++- 7 files changed, 56 insertions(+), 17 deletions(-)
Title: Generalized Random Forests
Description: Forest-based statistical estimation and inference.
GRF provides non-parametric methods for heterogeneous treatment effects estimation
(optionally using right-censored outcomes, multiple treatment arms or outcomes, or instrumental variables),
as well as least-squares regression, quantile regression, and survival regression,
all with support for missing covariates.
Author: Julie Tibshirani [aut],
Susan Athey [aut],
Rina Friedberg [ctb],
Vitor Hadad [ctb],
David Hirshberg [ctb],
Luke Miner [ctb],
Erik Sverdrup [aut, cre],
Stefan Wager [aut],
Marvin Wright [ctb]
Maintainer: Erik Sverdrup <erik.sverdrup@monash.edu>
Diff between grf versions 2.6.0 dated 2026-03-03 and 2.6.1 dated 2026-03-04
DESCRIPTION | 6 ++--- MD5 | 12 +++++----- inst/doc/grf_guide.pdf |binary src/src/forest/ForestTrainer.cpp | 2 - src/src/prediction/collector/DefaultPredictionCollector.cpp | 2 - src/src/prediction/collector/OptimizedPredictionCollector.cpp | 2 - src/src/prediction/collector/TreeTraverser.cpp | 2 - 7 files changed, 13 insertions(+), 13 deletions(-)
Title: Access to 'GeographicLib'
Description: Bindings to the 'GeographicLib' C++ library
<https://geographiclib.sourceforge.io/> for precise geodetic calculations
including geodesic computations (distance, bearing, paths, intersections),
map projections (UTM/UPS, Transverse Mercator, Lambert Conformal Conic,
and more), grid reference systems (MGRS, Geohash, GARS, Georef),
coordinate conversions (geocentric, local Cartesian), and polygon area
on the WGS84 ellipsoid. All functions are fully vectorized.
Author: Michael Sumner [cre, aut],
Charles Karney [cph, aut] ,
Mark Borgerding [cph] )
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between geographiclib versions 0.4.1 dated 2026-02-27 and 0.4.2 dated 2026-03-04
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ inst/doc/geographiclib-overview.html | 6 +++--- tests/testthat/test-cassini.R | 18 +++++++++--------- 5 files changed, 24 insertions(+), 19 deletions(-)
Title: Advanced Forest Plot Using 'grid' Graphics
Description: Allows the creation of forest plots with advanced features, such as
multiple confidence intervals per row, customizable fonts for individual text
elements, and flexible confidence interval drawing. It also supports mixing
text with mathematical expressions. The package extends the application of
forest plots beyond traditional meta-analyses, offering a more general version
of the original 'rmeta' package’s forestplot() function. It relies heavily on
the 'grid' package for rendering the plots.
Author: Max Gordon [aut, cre],
Thomas Lumley [aut, ctb]
Maintainer: Max Gordon <max@gforge.se>
Diff between forestplot versions 3.1.7 dated 2025-06-12 and 3.2.0 dated 2026-03-04
forestplot-3.1.7/forestplot/R/data-HRQoL.R |only forestplot-3.2.0/forestplot/DESCRIPTION | 21 forestplot-3.2.0/forestplot/MD5 | 279 - forestplot-3.2.0/forestplot/NAMESPACE | 116 forestplot-3.2.0/forestplot/NEWS.md | 327 - forestplot-3.2.0/forestplot/R/assertAndRetrieveTidyValue.R | 86 forestplot-3.2.0/forestplot/R/data-descriptions.R |only forestplot-3.2.0/forestplot/R/drawForestplotObject.R | 422 + forestplot-3.2.0/forestplot/R/forestplot-package.R | 60 forestplot-3.2.0/forestplot/R/forestplot.R | 352 - forestplot-3.2.0/forestplot/R/forestplot.data.frame.R | 122 forestplot-3.2.0/forestplot/R/forestplot.default.R | 425 - forestplot-3.2.0/forestplot/R/forestplot.grouped_df.R | 434 + forestplot-3.2.0/forestplot/R/forestplot_helpers.R | 2268 +++++----- forestplot-3.2.0/forestplot/R/fp_add_lines.R | 172 forestplot-3.2.0/forestplot/R/fp_decorate_graph.R | 385 + forestplot-3.2.0/forestplot/R/fp_extract_labeltext.R |only forestplot-3.2.0/forestplot/R/fp_insert_row.R | 571 +- forestplot-3.2.0/forestplot/R/fp_set_style.R | 110 forestplot-3.2.0/forestplot/R/fp_set_zebra_style.R | 156 forestplot-3.2.0/forestplot/R/getTicks.R | 194 forestplot-3.2.0/forestplot/R/grid_helpers.R | 42 forestplot-3.2.0/forestplot/R/plotConfidenceInterval.R | 306 - forestplot-3.2.0/forestplot/R/prFpDrawLegend.R | 398 - forestplot-3.2.0/forestplot/R/prFpGetGraphTicksAndClips.R | 508 +- forestplot-3.2.0/forestplot/R/prepGridMargins.R | 40 forestplot-3.2.0/forestplot/R/private.R | 1835 ++++---- forestplot-3.2.0/forestplot/R/private_buildLegend.R | 348 - forestplot-3.2.0/forestplot/R/private_createEstimateArray.R | 207 forestplot-3.2.0/forestplot/R/private_drawLines.R | 184 forestplot-3.2.0/forestplot/R/private_getColWidths.R | 160 forestplot-3.2.0/forestplot/R/private_plot.forestplot_legend.R | 220 forestplot-3.2.0/forestplot/R/private_plot.forestplot_xaxis.R | 284 - forestplot-3.2.0/forestplot/R/private_prGetLabelsList.R | 364 - forestplot-3.2.0/forestplot/R/private_prepAlign.R | 68 forestplot-3.2.0/forestplot/R/private_prepBoxSize.R | 89 forestplot-3.2.0/forestplot/R/private_prepGraphPositions.R | 68 forestplot-3.2.0/forestplot/R/private_prepLabelText.R | 277 - forestplot-3.2.0/forestplot/R/private_prepLines.R | 598 +- forestplot-3.2.0/forestplot/R/safeLoadPackage.R | 22 forestplot-3.2.0/forestplot/R/text_styling.R | 588 ++ forestplot-3.2.0/forestplot/README.md | 28 forestplot-3.2.0/forestplot/build/vignette.rds |binary forestplot-3.2.0/forestplot/data/inventors_vs_mello.rda |only forestplot-3.2.0/forestplot/inst/doc/forestplot.R | 920 ++-- forestplot-3.2.0/forestplot/inst/doc/forestplot.Rmd | 1270 +++-- forestplot-3.2.0/forestplot/inst/doc/forestplot.html | 2023 ++++---- forestplot-3.2.0/forestplot/inst/examples/forestplot_alt_ci_example.R | 228 - forestplot-3.2.0/forestplot/inst/examples/forestplot_example.R | 335 - forestplot-3.2.0/forestplot/inst/examples/fpColors_example.R | 52 forestplot-3.2.0/forestplot/inst/examples/fpLegend_example.R | 70 forestplot-3.2.0/forestplot/inst/examples/fpShapesGp_example.R | 56 forestplot-3.2.0/forestplot/inst/examples/fp_add_lines_example.R | 78 forestplot-3.2.0/forestplot/inst/examples/fp_decorate_graph_example.R | 52 forestplot-3.2.0/forestplot/inst/examples/fp_insert_row_example.R | 46 forestplot-3.2.0/forestplot/inst/examples/fp_set_favors_example.R |only forestplot-3.2.0/forestplot/inst/examples/fp_set_style_example.R | 42 forestplot-3.2.0/forestplot/inst/examples/fp_set_zebra_example.R | 42 forestplot-3.2.0/forestplot/inst/examples/getTicks_example.R | 66 forestplot-3.2.0/forestplot/man/HRQoL.Rd | 61 forestplot-3.2.0/forestplot/man/assertAndRetrieveTidyValue.Rd | 58 forestplot-3.2.0/forestplot/man/dfHRQoL.Rd | 65 forestplot-3.2.0/forestplot/man/drawHorizontalLines.Rd | 42 forestplot-3.2.0/forestplot/man/forestplot-package.Rd | 104 forestplot-3.2.0/forestplot/man/forestplot.Rd | 938 ++-- forestplot-3.2.0/forestplot/man/fpColors.Rd | 211 forestplot-3.2.0/forestplot/man/fpDrawCI.Rd | 607 +- forestplot-3.2.0/forestplot/man/fpLegend.Rd | 125 forestplot-3.2.0/forestplot/man/fpShapesGp.Rd | 301 - forestplot-3.2.0/forestplot/man/fpTxtGp.Rd | 100 forestplot-3.2.0/forestplot/man/fp_add_lines.Rd | 192 forestplot-3.2.0/forestplot/man/fp_align_where.Rd |only forestplot-3.2.0/forestplot/man/fp_decorate_graph.Rd | 206 forestplot-3.2.0/forestplot/man/fp_extract_labels.Rd |only forestplot-3.2.0/forestplot/man/fp_extract_labeltext.Rd |only forestplot-3.2.0/forestplot/man/fp_set_favors.Rd |only forestplot-3.2.0/forestplot/man/fp_set_summary.Rd |only forestplot-3.2.0/forestplot/man/fp_set_zebra_style.Rd | 132 forestplot-3.2.0/forestplot/man/fp_span_where.Rd |only forestplot-3.2.0/forestplot/man/fp_txt_where.Rd |only forestplot-3.2.0/forestplot/man/getTicks.Rd | 136 forestplot-3.2.0/forestplot/man/heightDetails.xaxis.Rd | 50 forestplot-3.2.0/forestplot/man/inventors_vs_mello.Rd |only forestplot-3.2.0/forestplot/man/prDefaultGp.Rd | 44 forestplot-3.2.0/forestplot/man/prFpConvertMultidimArray.Rd | 36 forestplot-3.2.0/forestplot/man/prFpDrawLine.Rd | 132 forestplot-3.2.0/forestplot/man/prFpFetchRowLabel.Rd | 73 forestplot-3.2.0/forestplot/man/prFpFindWidestGrob.Rd | 42 forestplot-3.2.0/forestplot/man/prFpGetConfintFnList.Rd | 74 forestplot-3.2.0/forestplot/man/prFpGetLayoutVP.Rd | 60 forestplot-3.2.0/forestplot/man/prFpGetLegendBoxPosition.Rd | 56 forestplot-3.2.0/forestplot/man/prFpPrepareLegendMarker.Rd | 48 forestplot-3.2.0/forestplot/man/prFpPrintLabels.Rd | 54 forestplot-3.2.0/forestplot/man/prFpValidateLabelList.Rd | 38 forestplot-3.2.0/forestplot/man/prFpXrange.Rd | 88 forestplot-3.2.0/forestplot/man/prGetLabelsList.Rd | 64 forestplot-3.2.0/forestplot/man/prGetShapeGp.Rd | 88 forestplot-3.2.0/forestplot/man/prGetTextGrobCex.Rd | 36 forestplot-3.2.0/forestplot/man/prGparMerge.Rd | 40 forestplot-3.2.0/forestplot/man/prGridPlotTitle.Rd | 42 forestplot-3.2.0/forestplot/man/prListRep.Rd | 44 forestplot-3.2.0/forestplot/man/prMergeGp.Rd | 40 forestplot-3.2.0/forestplot/man/prPopulateList.Rd | 72 forestplot-3.2.0/forestplot/man/prPushMarginViewport.Rd | 56 forestplot-3.2.0/forestplot/man/prepAlign.Rd | 42 forestplot-3.2.0/forestplot/man/prepGraphPositions.Rd | 42 forestplot-3.2.0/forestplot/man/prepGridMargins.Rd | 46 forestplot-3.2.0/forestplot/man/prepLabelText.Rd | 90 forestplot-3.2.0/forestplot/man/prepLines.Rd | 56 forestplot-3.2.0/forestplot/man/row_manipulation.Rd | 190 forestplot-3.2.0/forestplot/man/safeLoadPackage.Rd | 28 forestplot-3.2.0/forestplot/man/style_manipulation.Rd | 238 - forestplot-3.2.0/forestplot/man/text_styling.Rd | 96 forestplot-3.2.0/forestplot/tests/data_generator.R |only forestplot-3.2.0/forestplot/tests/forestplot2_vtests.R | 834 +-- forestplot-3.2.0/forestplot/tests/test_visual_w_cochrane_mdata.R | 252 - forestplot-3.2.0/forestplot/tests/test_visual_with_Greg.R | 68 forestplot-3.2.0/forestplot/tests/testthat.R | 6 forestplot-3.2.0/forestplot/tests/testthat/Rplots.pdf |binary forestplot-3.2.0/forestplot/tests/testthat/test-extract-labeltext.R |only forestplot-3.2.0/forestplot/tests/testthat/test-forestplot.group_df.R | 158 forestplot-3.2.0/forestplot/tests/testthat/test-forestplot_1_compatibility.R | 38 forestplot-3.2.0/forestplot/tests/testthat/test-fpShapesGp.R | 78 forestplot-3.2.0/forestplot/tests/testthat/test-fpTxtGp.R | 116 forestplot-3.2.0/forestplot/tests/testthat/test-fp_add_favors.R |only forestplot-3.2.0/forestplot/tests/testthat/test-getLines.R | 352 - forestplot-3.2.0/forestplot/tests/testthat/test-getTicks.R | 46 forestplot-3.2.0/forestplot/tests/testthat/test-graph-pos.R | 82 forestplot-3.2.0/forestplot/tests/testthat/test-inputs.R | 135 forestplot-3.2.0/forestplot/tests/testthat/test-insert_row.R | 318 + forestplot-3.2.0/forestplot/tests/testthat/test-prFpConvertMultidimArray.R | 114 forestplot-3.2.0/forestplot/tests/testthat/test-prGparMerge.R | 58 forestplot-3.2.0/forestplot/tests/testthat/test-selector-styling.R |only forestplot-3.2.0/forestplot/tests/testthat/test-span.R |only forestplot-3.2.0/forestplot/tests/vtest_from_vignette.R | 596 +- forestplot-3.2.0/forestplot/vignettes/forestplot.Rmd | 1270 +++-- forestplot-3.2.0/forestplot/vignettes/forestplot_files |only 137 files changed, 15254 insertions(+), 13064 deletions(-)
Title: Example Data Sets for Use with Discrete Statistical Tests
Description: Provides several data sets for use with discrete statistical tests
and discrete multiple testing procedures.
Author: Christina Kihn [aut],
Sebastian Doehler [aut] ,
Florian Junge [aut, cre] ,
Lukas Klein [ctb] ,
Iqraa Meah [ctb]
Maintainer: Florian Junge <diso.fbmn@h-da.de>
Diff between DiscreteDatasets versions 0.1.2 dated 2025-01-24 and 0.2.0 dated 2026-03-04
DiscreteDatasets-0.1.2/DiscreteDatasets/data/airway_treat.rda |only DiscreteDatasets-0.2.0/DiscreteDatasets/DESCRIPTION | 38 DiscreteDatasets-0.2.0/DiscreteDatasets/MD5 | 50 - DiscreteDatasets-0.2.0/DiscreteDatasets/NEWS.md | 39 DiscreteDatasets-0.2.0/DiscreteDatasets/R/DiscreteDatasets.R | 20 DiscreteDatasets-0.2.0/DiscreteDatasets/R/airway.R | 174 +-- DiscreteDatasets-0.2.0/DiscreteDatasets/R/amnesia.R | 157 +-- DiscreteDatasets-0.2.0/DiscreteDatasets/R/disorderdetection.R | 86 - DiscreteDatasets-0.2.0/DiscreteDatasets/R/federalist.R | 136 +- DiscreteDatasets-0.2.0/DiscreteDatasets/R/hiv.R | 140 +- DiscreteDatasets-0.2.0/DiscreteDatasets/R/impc.R |only DiscreteDatasets-0.2.0/DiscreteDatasets/R/listerdata.R | 146 +- DiscreteDatasets-0.2.0/DiscreteDatasets/R/reconstruct.R | 488 ++++------ DiscreteDatasets-0.2.0/DiscreteDatasets/build/partial.rdb |binary DiscreteDatasets-0.2.0/DiscreteDatasets/data/airway.rda |binary DiscreteDatasets-0.2.0/DiscreteDatasets/data/airway_four_columns.rda |binary DiscreteDatasets-0.2.0/DiscreteDatasets/data/disorderdetection.rda |binary DiscreteDatasets-0.2.0/DiscreteDatasets/data/impc2015_excerpt.rda |only DiscreteDatasets-0.2.0/DiscreteDatasets/man/DiscreteDatasets-package.Rd | 71 - DiscreteDatasets-0.2.0/DiscreteDatasets/man/airway.Rd | 83 - DiscreteDatasets-0.2.0/DiscreteDatasets/man/amnesia.Rd | 152 +-- DiscreteDatasets-0.2.0/DiscreteDatasets/man/disorderdetection.Rd | 28 DiscreteDatasets-0.2.0/DiscreteDatasets/man/federalist.Rd | 137 +- DiscreteDatasets-0.2.0/DiscreteDatasets/man/hiv.Rd | 50 - DiscreteDatasets-0.2.0/DiscreteDatasets/man/impc2015_excerpt.Rd |only DiscreteDatasets-0.2.0/DiscreteDatasets/man/listerdata.Rd | 62 - DiscreteDatasets-0.2.0/DiscreteDatasets/man/reconstruct_four.Rd | 25 DiscreteDatasets-0.2.0/DiscreteDatasets/man/reconstruct_two.Rd | 58 - 28 files changed, 1103 insertions(+), 1037 deletions(-)
More information about DiscreteDatasets at CRAN
Permanent link
Title: A Basic Set of Functions for Compositional Data Analysis
Description: A minimum set of functions to perform compositional data analysis
using the log-ratio approach introduced by John Aitchison (1982). Main functions
have been implemented in c++ for better performance.
Author: Marc Comas-Cufi [aut, cre]
Maintainer: Marc Comas-Cufi <mcomas@imae.udg.edu>
Diff between coda.base versions 1.0.3 dated 2025-07-02 and 1.0.5 dated 2026-03-04
coda.base-1.0.3/coda.base/R/dendrogram_adapted.R |only coda.base-1.0.5/coda.base/DESCRIPTION | 8 coda.base-1.0.5/coda.base/MD5 | 126 - coda.base-1.0.5/coda.base/NAMESPACE | 4 coda.base-1.0.5/coda.base/NEWS | 5 coda.base-1.0.5/coda.base/R/RcppExports.R | 44 coda.base-1.0.5/coda.base/R/basis.R | 1002 +++++----- coda.base-1.0.5/coda.base/R/coordinates.R | 411 ++-- coda.base-1.0.5/coda.base/R/data.R | 505 ++--- coda.base-1.0.5/coda.base/R/dendrogram.R | 258 ++ coda.base-1.0.5/coda.base/R/imputation-functions.R | 68 coda.base-1.0.5/coda.base/R/pb_basis_constrained.R | 101 - coda.base-1.0.5/coda.base/R/utils.R | 511 +++-- coda.base-1.0.5/coda.base/R/zero_replacement_imputation.R | 580 +++-- coda.base-1.0.5/coda.base/inst/doc/coordinates.Rmd | 2 coda.base-1.0.5/coda.base/inst/doc/coordinates.html | 15 coda.base-1.0.5/coda.base/inst/doc/features.html | 9 coda.base-1.0.5/coda.base/inst/doc/principal_balances.html | 15 coda.base-1.0.5/coda.base/man/alimentation.Rd | 33 coda.base-1.0.5/coda.base/man/alr_basis.Rd | 25 coda.base-1.0.5/coda.base/man/arctic_lake.Rd | 4 coda.base-1.0.5/coda.base/man/blood_mn.Rd | 31 coda.base-1.0.5/coda.base/man/bmi_activity.Rd | 31 coda.base-1.0.5/coda.base/man/cc_basis.Rd | 13 coda.base-1.0.5/coda.base/man/cdp_basis.Rd |only coda.base-1.0.5/coda.base/man/clr_basis.Rd | 26 coda.base-1.0.5/coda.base/man/coda_replacement.Rd | 52 coda.base-1.0.5/coda.base/man/composition.Rd | 17 coda.base-1.0.5/coda.base/man/conditional_obasis.Rd |only coda.base-1.0.5/coda.base/man/constrained_pb.Rd |only coda.base-1.0.5/coda.base/man/coordinates.Rd | 56 coda.base-1.0.5/coda.base/man/dist.Rd | 30 coda.base-1.0.5/coda.base/man/eurostat_employment.Rd | 60 coda.base-1.0.5/coda.base/man/foraminiferals.Rd | 16 coda.base-1.0.5/coda.base/man/gen_coda_with_zeros_and_missings.Rd |only coda.base-1.0.5/coda.base/man/house_expend.Rd | 16 coda.base-1.0.5/coda.base/man/household_budget.Rd | 17 coda.base-1.0.5/coda.base/man/ilr_basis.Rd | 52 coda.base-1.0.5/coda.base/man/kilauea_iki.Rd | 35 coda.base-1.0.5/coda.base/man/mammals_milk.Rd | 10 coda.base-1.0.5/coda.base/man/milk_cows.Rd | 19 coda.base-1.0.5/coda.base/man/montana.Rd | 26 coda.base-1.0.5/coda.base/man/pairwise_basis.Rd | 11 coda.base-1.0.5/coda.base/man/parliament2017.Rd | 25 coda.base-1.0.5/coda.base/man/pb_basis.Rd | 72 coda.base-1.0.5/coda.base/man/pb_subcomposition.Rd |only coda.base-1.0.5/coda.base/man/pc_basis.Rd | 10 coda.base-1.0.5/coda.base/man/petrafm.Rd | 12 coda.base-1.0.5/coda.base/man/plot_balance.Rd | 42 coda.base-1.0.5/coda.base/man/pollen.Rd | 6 coda.base-1.0.5/coda.base/man/pottery.Rd | 11 coda.base-1.0.5/coda.base/man/sbp_basis.Rd | 101 - coda.base-1.0.5/coda.base/man/serprot.Rd | 13 coda.base-1.0.5/coda.base/man/statistitian_time.Rd | 27 coda.base-1.0.5/coda.base/man/variation_array.Rd | 4 coda.base-1.0.5/coda.base/man/waste.Rd | 49 coda.base-1.0.5/coda.base/man/weibo_hotels.Rd | 16 coda.base-1.0.5/coda.base/man/zero_na_conditional_obasis.Rd |only coda.base-1.0.5/coda.base/src/RcppExports.cpp | 177 - coda.base-1.0.5/coda.base/src/balance.h | 253 +- coda.base-1.0.5/coda.base/src/balance_evaluate.h | 122 - coda.base-1.0.5/coda.base/src/balance_optimal.h | 134 - coda.base-1.0.5/coda.base/src/coda.cpp | 255 +- coda.base-1.0.5/coda.base/src/coda.h | 26 coda.base-1.0.5/coda.base/src/coda_replacement.cpp |only coda.base-1.0.5/coda.base/src/conditional_obasis.cpp | 239 +- coda.base-1.0.5/coda.base/src/principal_balances.cpp | 430 ---- coda.base-1.0.5/coda.base/vignettes/coordinates.Rmd | 2 68 files changed, 3524 insertions(+), 2746 deletions(-)
Title: R-ArcGIS Bridge Utility Functions
Description: Developer oriented utility functions designed to be used as
the building blocks of R packages that work with ArcGIS Location
Services. It provides functionality for authorization, Esri JSON
construction and parsing, as well as other utilities pertaining to
geometry and Esri type conversions. To support 'ArcGIS Pro' users,
authorization can be done via 'arcgisbinding'. Installation
instructions for 'arcgisbinding' can be found at
<https://developers.arcgis.com/r-bridge/installation/>.
Author: Josiah Parry [aut, cre] ,
Kenneth Vernon [ctb] ,
Martha Bass [ctb] ,
Eli Pousson [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcgisutils versions 0.4.0 dated 2025-09-18 and 0.5.0 dated 2026-03-04
DESCRIPTION | 10 - MD5 | 54 ++++--- NAMESPACE | 6 NEWS.md | 8 - R/arc-token.R | 9 - R/auth-shiny.R |only R/esri-features-list.R | 9 - R/esri-features-string.R | 15 + R/esri-featureset-string.R | 15 + R/esri-field-mapping.R | 24 ++- R/esri-geometry.R | 3 R/geoprocessing-class.R | 74 ++++++++- R/geoprocessing-types.R | 22 ++ R/import-standalone-obj-type.R | 27 +-- R/import-standalone-types-check.R | 274 +++++++++++++++++++----------------- R/portal-group-user-list.R |only R/portal-users.R | 10 + R/utils-crs.R | 13 + R/utils-envelope.R |only R/utils-geometry.R | 4 R/zzz.R | 2 inst |only man/arc_form_params.Rd | 2 man/arc_group_users.Rd |only man/arc_job_status.Rd | 1 man/auth_shiny.Rd |only man/gp_job.Rd | 9 + man/gp_job_from_url.Rd |only man/gp_params.Rd | 26 +++ src/rust/src/to/mod.rs | 3 tests/testthat/test-envelope.R |only tests/testthat/test-field-mapping.R |only 32 files changed, 402 insertions(+), 218 deletions(-)
Title: Harness ArcGIS Data Services
Description: Enables users of 'ArcGIS Enterprise', 'ArcGIS Online', or
'ArcGIS Platform' to read, write, publish, or manage vector and raster
data via ArcGIS location services REST API endpoints
<https://developers.arcgis.com/rest/>.
Author: Josiah Parry [aut, cre] ,
Eli Pousson [ctb] ,
Kenneth Vernon [ctb] ,
Martha Bass [ctb] ,
Antony Barja [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between arcgislayers versions 0.5.2 dated 2025-10-28 and 0.6.0 dated 2026-03-04
arcgislayers-0.5.2/arcgislayers/man/update_attachments.Rd |only arcgislayers-0.6.0/arcgislayers/DESCRIPTION | 6 arcgislayers-0.6.0/arcgislayers/MD5 | 21 - arcgislayers-0.6.0/arcgislayers/NAMESPACE | 1 arcgislayers-0.6.0/arcgislayers/NEWS.md | 15 + arcgislayers-0.6.0/arcgislayers/R/add-attachment.R |only arcgislayers-0.6.0/arcgislayers/R/arc-select.R | 2 arcgislayers-0.6.0/arcgislayers/R/update-attachments.R | 13 - arcgislayers-0.6.0/arcgislayers/man/attachments.Rd | 130 +++++++++- arcgislayers-0.6.0/arcgislayers/tests/testthat/test-arc_open.R | 14 - arcgislayers-0.6.0/arcgislayers/tests/testthat/test-arc_raster.R | 2 arcgislayers-0.6.0/arcgislayers/tests/testthat/test-arc_read.R | 2 arcgislayers-0.6.0/arcgislayers/tests/testthat/test-empty-services.R |only 13 files changed, 181 insertions(+), 25 deletions(-)
Title: Open Perimetry Interface
Description: Implementation of the Open Perimetry Interface (OPI) for simulating and controlling visual field machines using R. The OPI is a standard for interfacing with visual field testing machines (perimeters) first started as an open source project with support of Haag-Streit in 2010. It specifies basic functions that allow many visual field tests to be constructed. As of February 2022 it is fully implemented on the Haag-Streit Octopus 900 and 'CrewT ImoVifa' ('Topcon Tempo') with partial implementations on the Centervue Compass, Kowa AP 7000 and Android phones. It also has a cousin: the R package 'visualFields', which has tools for analysing and manipulating visual field data.
Author: Andrew Turpin [cre, aut, cph] ,
David Lawson [ctb, cph],
Ivan Marin-Franch [ctb, cph],
Matthias Muller [ctb],
Jonathan Denniss [ctb, cph],
Astrid Zeman [ctb],
Giovanni Montesano [ctb]
Maintainer: Andrew Turpin <andrew.turpin@lei.org.au>
Diff between OPI versions 3.0.6 dated 2026-01-14 and 3.1.0 dated 2026-03-03
DESCRIPTION | 12 +++++----- MD5 | 44 +++++++++++++++++++++---------------- NEWS.md | 8 +++++- R/Compass.r | 21 +++++++++++------ R/Envision.r |only R/MAIA.r | 4 +-- R/SimHenson.r | 12 +++++++--- R/opi.r | 11 +++++---- man/dot-opi_env.Rd | 2 - man/opiClose.Rd | 2 - man/opiClose_for_Compass.Rd | 8 ++++++ man/opiClose_for_Envision.Rd |only man/opiInitialise.Rd | 1 man/opiInitialise_for_Compass.Rd | 4 +-- man/opiInitialise_for_Envision.Rd |only man/opiInitialise_for_MAIA.Rd | 2 - man/opiInitialise_for_SimHenson.Rd | 2 + man/opiPresent.Rd | 2 - man/opiPresent_for_Envision.Rd |only man/opiQueryDevice.Rd | 2 - man/opiQueryDevice_for_Compass.Rd | 2 - man/opiQueryDevice_for_Envision.Rd |only man/opiQueryDevice_for_MAIA.Rd | 2 - man/opiSetup.Rd | 2 - man/opiSetup_for_Envision.Rd |only tests/testthat/test-opiPresent.r | 14 +++++++++++ 26 files changed, 105 insertions(+), 52 deletions(-)
Title: Access the 'City of Vancouver' Open Data API
Description: Wrapper around the 'City of Vancouver' Open Data API <https://opendata.vancouver.ca/api/v2/console> to simplify and standardize access to 'City of Vancouver' open data.
Functionality to list the data catalogue and access data and geographic records.
Author: Jens von Bergmann [aut, cre]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between VancouvR versions 0.1.8 dated 2024-04-18 and 0.1.9 dated 2026-03-03
DESCRIPTION | 17 ++- MD5 | 39 ++++--- NEWS.md | 7 + R/datasets.R | 225 +++++++++++++++++++++++++++++++-------------- README.md | 7 + build/vignette.rds |binary inst/doc/Demo.R | 39 ++++--- inst/doc/Demo.Rmd | 43 ++++---- inst/doc/Demo.html | 92 +++++++++--------- inst/doc/Isolines.R | 14 ++ inst/doc/Isolines.Rmd | 22 +++- inst/doc/Isolines.html | 42 +++++--- man/aggregate_cov_data.Rd | 44 ++++++-- man/get_cov_data.Rd | 57 ++++++++--- man/get_cov_metadata.Rd | 29 ++++- man/list_cov_datasets.Rd | 19 ++- man/search_cov_datasets.Rd | 26 +++-- tests |only vignettes/Demo.Rmd | 43 ++++---- vignettes/Isolines.Rmd | 22 +++- 20 files changed, 519 insertions(+), 268 deletions(-)
Title: Changepoint Additive Models for Time Series Omics Data
Description: Provides a comprehensive framework for time series omics analysis,
integrating changepoint detection, smooth and shape-constrained trends,
and uncertainty quantification. It supports gene- and transcript-level inferences,
p-value aggregation for improved power, and both case-only and case-control designs.
It includes an interactive 'shiny' interface. The methods are described in Yates et al. (2024) <doi:10.1101/2024.12.22.630003>.
Author: Luke Yates [aut, cre, cph] ,
Michael Charleston [aut],
Jazmine Humphreys [aut],
Steven Smith [aut]
Maintainer: Luke Yates <luke.yates@utas.edu.au>
Diff between cpam versions 0.1.3 dated 2025-03-13 and 0.2.0 dated 2026-03-03
cpam-0.1.3/cpam/vignettes/cpam_cache/html/clusters-1_8883dd44465b101e6cd05ff73e9ec829.RData |only cpam-0.1.3/cpam/vignettes/cpam_cache/html/clusters-1_8883dd44465b101e6cd05ff73e9ec829.rdb |only cpam-0.1.3/cpam/vignettes/cpam_cache/html/clusters-1_8883dd44465b101e6cd05ff73e9ec829.rdx |only cpam-0.1.3/cpam/vignettes/cpam_cache/html/clusters-2_7dd4df92554ca4b23d80d948cb33317b.RData |only cpam-0.1.3/cpam/vignettes/cpam_cache/html/clusters-2_7dd4df92554ca4b23d80d948cb33317b.rdb |only cpam-0.1.3/cpam/vignettes/cpam_cache/html/clusters-2_7dd4df92554ca4b23d80d948cb33317b.rdx |only cpam-0.2.0/cpam/DESCRIPTION | 9 cpam-0.2.0/cpam/MD5 | 47 ++-- cpam-0.2.0/cpam/NAMESPACE | 2 cpam-0.2.0/cpam/NEWS.md | 8 cpam-0.2.0/cpam/R/acat.R |only cpam-0.2.0/cpam/R/app.R | 2 cpam-0.2.0/cpam/R/compute_p_values.R | 115 ++++++---- cpam-0.2.0/cpam/R/estimate_changepoint.R | 102 +++++--- cpam-0.2.0/cpam/R/prepare_cpam.R | 2 cpam-0.2.0/cpam/R/results.R | 2 cpam-0.2.0/cpam/R/select_shape.R | 18 - cpam-0.2.0/cpam/README.md | 9 cpam-0.2.0/cpam/build/partial.rdb |binary cpam-0.2.0/cpam/build/vignette.rds |binary cpam-0.2.0/cpam/inst/doc/cpam.html | 48 ++-- cpam-0.2.0/cpam/man/acat.Rd |only cpam-0.2.0/cpam/man/compute_p_values.Rd | 4 cpam-0.2.0/cpam/man/estimate_changepoint.Rd | 14 - cpam-0.2.0/cpam/tests/testthat/_snaps |only cpam-0.2.0/cpam/tests/testthat/test-acat.R |only cpam-0.2.0/cpam/tests/testthat/test-pipeline.R |only cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-1_70430fbb23ba930c48d14d686cdcad61.RData |only cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-1_70430fbb23ba930c48d14d686cdcad61.rdb |only cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-1_70430fbb23ba930c48d14d686cdcad61.rdx |only cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-2_9a0a18756a1afaf6860cd029d4db4dda.RData |only cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-2_9a0a18756a1afaf6860cd029d4db4dda.rdb |only cpam-0.2.0/cpam/vignettes/cpam_cache/html/clusters-2_9a0a18756a1afaf6860cd029d4db4dda.rdx |only 33 files changed, 241 insertions(+), 141 deletions(-)
Title: Interface to 'Rangeland Analysis Platform' (RAP) Products
Description: Provides access to 'Rangeland Analysis Platform' (RAP) products <https://rangelands.app/products> for arbitrary extents via 'GDAL' virtual file system.
Author: Andrew Brown [aut, cre] ,
Georgia Harrison [ctb] ,
Scott Appleby [ctb]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Diff between rapr versions 1.1.2 dated 2026-01-30 and 1.1.3 dated 2026-03-03
rapr-1.1.2/rapr/R/get_rap_16day.R |only rapr-1.1.2/rapr/man/get_rap_production16day_table.Rd |only rapr-1.1.3/rapr/DESCRIPTION | 14 +-- rapr-1.1.3/rapr/MD5 | 36 ++++---- rapr-1.1.3/rapr/NAMESPACE | 1 rapr-1.1.3/rapr/NEWS.md | 12 ++ rapr-1.1.3/rapr/R/get_rap.R | 8 - rapr-1.1.3/rapr/R/get_rap_internal.R | 6 - rapr-1.1.3/rapr/R/get_rap_legacy.R | 2 rapr-1.1.3/rapr/R/get_rap_table.R |only rapr-1.1.3/rapr/README.md | 85 +++++++++++++++---- rapr-1.1.3/rapr/inst/doc/demo.R | 14 +++ rapr-1.1.3/rapr/inst/doc/demo.Rmd | 29 ++++++ rapr-1.1.3/rapr/inst/doc/demo.html | 19 ++++ rapr-1.1.3/rapr/inst/tinytest/test_rapr.R | 2 rapr-1.1.3/rapr/man/figures/README-example-1.png |binary rapr-1.1.3/rapr/man/get_rap.Rd | 10 +- rapr-1.1.3/rapr/man/get_rap_table.Rd |only rapr-1.1.3/rapr/man/rap_projection.Rd | 2 rapr-1.1.3/rapr/man/rapr-package.Rd | 1 rapr-1.1.3/rapr/vignettes/demo.Rmd | 29 ++++++ 21 files changed, 213 insertions(+), 57 deletions(-)
Title: Processing Agro-Environmental Data
Description: A set of tools for processing and analyzing data developed in the
context of the "Who Has Eaten the Planet" (WHEP) project, funded by the
European Research Council (ERC). For more details on multi-regional
input–output model "Food and Agriculture Biomass Input–Output" (FABIO) see
Bruckner et al. (2019) <doi:10.1021/acs.est.9b03554>.
Author: Catalin Covaci [aut, cre] ,
Eduardo Aguilera [aut, cph] ,
Alice Beckmann [aut] ,
Juan Infante [aut] ,
Justin Morgan [aut] ,
Joao Serra [ctb] ,
European Research Council [fnd]
Maintainer: Catalin Covaci <catalin.covaci@csic.es>
Diff between whep versions 0.2.0 dated 2025-10-15 and 0.3.0 dated 2026-03-03
whep-0.2.0/whep/inst/extdata/examples/bilateral_trade |only whep-0.2.0/whep/inst/extdata/examples/commodity_balance_sheet |only whep-0.2.0/whep/inst/extdata/examples/crop_residues |only whep-0.2.0/whep/inst/extdata/examples/feed_intake |only whep-0.2.0/whep/inst/extdata/examples/primary_prod |only whep-0.2.0/whep/inst/extdata/examples/processing_coefs |only whep-0.2.0/whep/man/linear_fill.Rd |only whep-0.2.0/whep/man/proxy_fill.Rd |only whep-0.2.0/whep/man/sum_fill.Rd |only whep-0.3.0/whep/DESCRIPTION | 21 whep-0.3.0/whep/MD5 | 113 whep-0.3.0/whep/NAMESPACE | 17 whep-0.3.0/whep/NEWS.md | 10 whep-0.3.0/whep/R/bilateral_trade.R | 168 - whep-0.3.0/whep/R/calculate_lmdi.R |only whep-0.3.0/whep/R/commodity_balance_sheet.R | 30 whep-0.3.0/whep/R/gapfilling.R | 1352 +++++++++- whep-0.3.0/whep/R/harmonize.R |only whep-0.3.0/whep/R/input_files.R | 102 whep-0.3.0/whep/R/livestock.R | 15 whep-0.3.0/whep/R/n_prov_destiny.R |only whep-0.3.0/whep/R/n_soil_inputs_nue.R |only whep-0.3.0/whep/R/production.R | 30 whep-0.3.0/whep/R/scrape_faostat.R | 2 whep-0.3.0/whep/R/supply_use.R | 42 whep-0.3.0/whep/R/toy_examples.R |only whep-0.3.0/whep/R/utils.R | 300 ++ whep-0.3.0/whep/R/whep-package.R | 1 whep-0.3.0/whep/build/partial.rdb |binary whep-0.3.0/whep/build/vignette.rds |binary whep-0.3.0/whep/data/whep_inputs.rda |binary whep-0.3.0/whep/inst/DESCRIPTION |only whep-0.3.0/whep/inst/doc/harmonization_function.R |only whep-0.3.0/whep/inst/doc/harmonization_function.Rmd |only whep-0.3.0/whep/inst/doc/harmonization_function.html |only whep-0.3.0/whep/inst/extdata/examples/_pins.yaml | 12 whep-0.3.0/whep/inst/extdata/whep_inputs.csv | 18 whep-0.3.0/whep/inst/scripts/prepare_upload.R | 28 whep-0.3.0/whep/man/build_supply_use.Rd | 32 whep-0.3.0/whep/man/calculate_lmdi.Rd |only whep-0.3.0/whep/man/calculate_nue_crops.Rd |only whep-0.3.0/whep/man/calculate_nue_livestock.Rd |only whep-0.3.0/whep/man/calculate_system_nue.Rd |only whep-0.3.0/whep/man/create_n_nat_destiny.Rd |only whep-0.3.0/whep/man/create_n_production.Rd |only whep-0.3.0/whep/man/create_n_prov_destiny.Rd |only whep-0.3.0/whep/man/create_n_soil_inputs.Rd |only whep-0.3.0/whep/man/fill_linear.Rd |only whep-0.3.0/whep/man/fill_proxy_growth.Rd |only whep-0.3.0/whep/man/fill_sum.Rd |only whep-0.3.0/whep/man/get_bilateral_trade.Rd | 18 whep-0.3.0/whep/man/get_faostat_data.Rd | 2 whep-0.3.0/whep/man/get_feed_intake.Rd | 9 whep-0.3.0/whep/man/get_primary_production.Rd | 9 whep-0.3.0/whep/man/get_primary_residues.Rd | 9 whep-0.3.0/whep/man/get_processing_coefs.Rd | 9 whep-0.3.0/whep/man/get_wide_cbs.Rd | 9 whep-0.3.0/whep/man/harmonize_interpolate.Rd |only whep-0.3.0/whep/man/harmonize_simple.Rd |only whep-0.3.0/whep/man/whep-package.Rd | 3 whep-0.3.0/whep/tests/testthat/_snaps |only whep-0.3.0/whep/tests/testthat/test_bilateral_trade.R | 47 whep-0.3.0/whep/tests/testthat/test_calculate_lmdi.R |only whep-0.3.0/whep/tests/testthat/test_commodity_balance_sheet.R | 6 whep-0.3.0/whep/tests/testthat/test_gapfilling.R | 775 +++++ whep-0.3.0/whep/tests/testthat/test_harmonize.R |only whep-0.3.0/whep/tests/testthat/test_input_files.R | 113 whep-0.3.0/whep/tests/testthat/test_n_prov_destiny.R |only whep-0.3.0/whep/tests/testthat/test_n_soil_inputs_nue.R |only whep-0.3.0/whep/vignettes/harmonization_function.Rmd |only 70 files changed, 2737 insertions(+), 565 deletions(-)
Title: Statistical Methods for Microbiome Compositional Data
Description: A suite of methods for powerful and robust microbiome data analysis addressing zero-inflation, phylogenetic structure and compositional effects. Includes the LinDA method for differential abundance analysis (Zhou et al. (2022)<doi:10.1186/s13059-022-02655-5>), the BMDD (Bimodal Dirichlet Distribution) method for accurate modeling and imputation of zero-inflated microbiome sequencing data (Zhou et al. (2025)<doi:10.1371/journal.pcbi.1013124>) and compositional sparse CCA methods for microbiome multi-omics data integration (Deng et al. (2024) <doi: 10.3389/fgene.2024.1489694>).
Author: Xianyang Zhang [aut],
Jun Chen [aut, cre],
Huijuan Zhou [ctb],
Linsui Deng [ctb]
Maintainer: Jun Chen <chen.jun2@mayo.edu>
Diff between MicrobiomeStat versions 1.3 dated 2026-01-08 and 1.4 dated 2026-03-03
DESCRIPTION | 14 MD5 | 20 NAMESPACE | 17 R/CCA_algorithm.R | 1561 ++++++++++++++++++++++++++--------------------------- R/bmdd_R.R | 4 cleanup | 3 configure | 71 +- data/smokers.rda |binary man/bmdd.Rd | 8 man/cscca.CV.Rd | 5 src/bmdd_nlopt.cpp | 3 11 files changed, 867 insertions(+), 839 deletions(-)
More information about MicrobiomeStat at CRAN
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Title: Printing Floating Point Numbers in a Human-Friendly Format
Description: Print vectors (and data frames) of floating point numbers
using a non-scientific format optimized for human readers. Vectors of
numbers are rounded using significant digits, aligned at the decimal
point, and all zeros trailing the decimal point are dropped. See:
Wright (2016). Lucid: An R Package for Pretty-Printing Floating Point
Numbers. In JSM Proceedings, Statistical Computing Section.
Alexandria, VA: American Statistical Association. 2270-2279.
Author: Kevin Wright [aut, cre, cph]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between lucid versions 1.9 dated 2025-04-03 and 1.11 dated 2026-03-03
DESCRIPTION | 11 +-- LICENSE | 2 MD5 | 18 ++--- NEWS.md | 18 +++-- build/vignette.rds |binary inst/doc/lucid_examples.R | 8 -- inst/doc/lucid_examples.Rmd | 15 ---- inst/doc/lucid_examples.html | 154 ++++++++++++------------------------------- tests/testthat/test_vc.r | 23 +++--- vignettes/lucid_examples.Rmd | 15 ---- 10 files changed, 86 insertions(+), 178 deletions(-)
Title: Fit Interpretable Machine Learning Models
Description: Package for training interpretable machine learning models. Historically, the most interpretable machine learning models were not very accurate, and the most accurate models were not very interpretable. Microsoft Research has developed an algorithm called the Explainable Boosting Machine (EBM) which has both high accuracy and interpretable characteristics. EBM uses machine learning techniques like bagging and boosting to breathe new life into traditional GAMs (Generalized Additive Models). This makes them as accurate as random forests and gradient boosted trees, and also enhances their intelligibility and editability. Details on the EBM algorithm can be found in the paper by Rich Caruana, Yin Lou, Johannes Gehrke, Paul Koch, Marc Sturm, and Noemie Elhadad (2015, <doi:10.1145/2783258.2788613>).
Author: Samuel Jenkins [aut],
Harsha Nori [aut],
Paul Koch [aut],
Rich Caruana [aut, cre],
The InterpretML Contributors [cph]
Maintainer: Rich Caruana <interpretml@outlook.com>
This is a re-admission after prior archival of version 0.1.34 dated 2024-11-28
Diff between interpret versions 0.1.34 dated 2024-11-28 and 0.1.35 dated 2026-03-03
interpret-0.1.34/interpret/src/libebm/InnerBag.cpp |only interpret-0.1.34/interpret/src/libebm/InnerBag.hpp |only interpret-0.1.34/interpret/src/libebm/PartitionTwoDimensionalBoosting.cpp |only interpret-0.1.34/interpret/src/libebm/PartitionTwoDimensionalInteraction.cpp |only interpret-0.1.35/interpret/DESCRIPTION | 8 interpret-0.1.35/interpret/MD5 | 119 interpret-0.1.35/interpret/R/dataset.R | 20 interpret-0.1.35/interpret/R/ebm.R | 4 interpret-0.1.35/interpret/src/Makevars | 9 interpret-0.1.35/interpret/src/interpret_R.cpp | 22 interpret-0.1.35/interpret/src/libebm/ApplyTermUpdate.cpp | 384 +- interpret-0.1.35/interpret/src/libebm/BoosterCore.cpp | 513 ++- interpret-0.1.35/interpret/src/libebm/BoosterCore.hpp | 5 interpret-0.1.35/interpret/src/libebm/BoosterShell.cpp | 18 interpret-0.1.35/interpret/src/libebm/BoosterShell.hpp | 1 interpret-0.1.35/interpret/src/libebm/CalcInteractionStrength.cpp | 338 +- interpret-0.1.35/interpret/src/libebm/DataSetBoosting.cpp | 459 +-- interpret-0.1.35/interpret/src/libebm/DataSetBoosting.hpp | 47 interpret-0.1.35/interpret/src/libebm/DataSetInnerBag.cpp |only interpret-0.1.35/interpret/src/libebm/DataSetInnerBag.hpp |only interpret-0.1.35/interpret/src/libebm/DataSetInteraction.cpp | 4 interpret-0.1.35/interpret/src/libebm/DetermineLinkFunction.cpp | 102 interpret-0.1.35/interpret/src/libebm/Feature.hpp | 16 interpret-0.1.35/interpret/src/libebm/GenerateTermUpdate.cpp | 743 +++-- interpret-0.1.35/interpret/src/libebm/InitializeGradientsAndHessians.cpp | 11 interpret-0.1.35/interpret/src/libebm/InteractionCore.cpp | 24 interpret-0.1.35/interpret/src/libebm/InteractionCore.hpp | 3 interpret-0.1.35/interpret/src/libebm/InteractionShell.cpp | 7 interpret-0.1.35/interpret/src/libebm/PartitionMultiDimensionalCorner.cpp |only interpret-0.1.35/interpret/src/libebm/PartitionMultiDimensionalFull.cpp |only interpret-0.1.35/interpret/src/libebm/PartitionMultiDimensionalStraight.cpp |only interpret-0.1.35/interpret/src/libebm/PartitionMultiDimensionalTree.cpp |only interpret-0.1.35/interpret/src/libebm/PartitionOneDimensionalBoosting.cpp | 1290 +++++++--- interpret-0.1.35/interpret/src/libebm/PartitionRandomBoosting.cpp | 30 interpret-0.1.35/interpret/src/libebm/Purify.cpp | 358 ++ interpret-0.1.35/interpret/src/libebm/SplitPosition.hpp | 28 interpret-0.1.35/interpret/src/libebm/SubsetInnerBag.cpp |only interpret-0.1.35/interpret/src/libebm/SubsetInnerBag.hpp |only interpret-0.1.35/interpret/src/libebm/TensorTotalsBuild.cpp | 4 interpret-0.1.35/interpret/src/libebm/TermInnerBag.cpp | 143 - interpret-0.1.35/interpret/src/libebm/TermInnerBag.hpp | 37 interpret-0.1.35/interpret/src/libebm/Transpose.hpp | 14 interpret-0.1.35/interpret/src/libebm/TreeNode.hpp | 323 +- interpret-0.1.35/interpret/src/libebm/TreeNodeMulti.hpp |only interpret-0.1.35/interpret/src/libebm/bridge/bridge.h | 9 interpret-0.1.35/interpret/src/libebm/bridge/common.hpp | 9 interpret-0.1.35/interpret/src/libebm/compute/Objective.hpp | 39 interpret-0.1.35/interpret/src/libebm/compute/Registration.hpp | 119 interpret-0.1.35/interpret/src/libebm/compute/cpu_ebm/cpu_64.cpp | 22 interpret-0.1.35/interpret/src/libebm/compute/objectives/ExampleRegressionObjective.hpp | 2 interpret-0.1.35/interpret/src/libebm/compute/objectives/GammaDevianceRegressionObjective.hpp | 2 interpret-0.1.35/interpret/src/libebm/compute/objectives/LogLossBinaryObjective.hpp | 3 interpret-0.1.35/interpret/src/libebm/compute/objectives/LogLossMulticlassObjective.hpp | 1 interpret-0.1.35/interpret/src/libebm/compute/objectives/PoissonDevianceRegressionObjective.hpp | 2 interpret-0.1.35/interpret/src/libebm/compute/objectives/PseudoHuberRegressionObjective.hpp | 2 interpret-0.1.35/interpret/src/libebm/compute/objectives/RmseLogLinkRegressionObjective.hpp | 2 interpret-0.1.35/interpret/src/libebm/compute/objectives/RmseRegressionObjective.hpp | 3 interpret-0.1.35/interpret/src/libebm/compute/objectives/TweedieDevianceRegressionObjective.hpp | 2 interpret-0.1.35/interpret/src/libebm/dataset_shared.cpp | 50 interpret-0.1.35/interpret/src/libebm/dataset_shared.hpp | 2 interpret-0.1.35/interpret/src/libebm/debug_ebm.cpp | 22 interpret-0.1.35/interpret/src/libebm/ebm_internal.hpp | 7 interpret-0.1.35/interpret/src/libebm/ebm_stats.hpp | 3 interpret-0.1.35/interpret/src/libebm/inc/libebm.h | 77 interpret-0.1.35/interpret/src/libebm/interpretable_numerics.cpp | 179 + interpret-0.1.35/interpret/src/libebm/sampling.cpp | 8 interpret-0.1.35/interpret/src/libebm/unzoned/unzoned.h | 3 67 files changed, 3562 insertions(+), 2090 deletions(-)
Title: The Nonparametric Classification Methods for Cognitive Diagnosis
Description: Statistical tools for analyzing cognitive diagnosis (CD) data collected from small settings using the nonparametric classification (NPCD) framework. The core methods of the NPCD framework includes the nonparametric classification (NPC) method developed by Chiu and Douglas (2013) <DOI:10.1007/s00357-013-9132-9> and the general NPC (GNPC) method developed by Chiu, Sun, and Bian (2018) <DOI:10.1007/s11336-017-9595-4> and Chiu and Köhn (2019) <DOI:10.1007/s11336-019-09660-x>. An extension of the NPCD framework included in the package is the nonparametric method for multiple-choice items (MC-NPC) developed by Wang, Chiu, and Koehn (2023) <DOI:10.3102/10769986221133088>. Functions associated with various extensions concerning the evaluation, validation, and feasibility of the CD analysis are also provided. These topics include the completeness of Q-matrix, Q-matrix refinement method, as well as Q-matrix estimation.
Author: Chia-Yi Chiu [aut, cph],
Weixuan Xiao [aut, cre],
Hans Friedrich Koehn [aut],
Yu Wang [aut],
Xiran Wen [aut]
Maintainer: Weixuan Xiao <wx2299@tc.columbia.edu>
Diff between NPCDTools versions 1.0 dated 2024-09-23 and 1.1.0 dated 2026-03-03
NPCDTools-1.0/NPCDTools/R/AlphaPermute.R |only NPCDTools-1.0/NPCDTools/R/Q_generate.R |only NPCDTools-1.1.0/NPCDTools/DESCRIPTION | 24 NPCDTools-1.1.0/NPCDTools/MD5 | 77 +- NPCDTools-1.1.0/NPCDTools/NAMESPACE | 20 NPCDTools-1.1.0/NPCDTools/NEWS.md |only NPCDTools-1.1.0/NPCDTools/R/AAR.R | 5 NPCDTools-1.1.0/NPCDTools/R/GNPC.R | 449 +++++++++++----- NPCDTools-1.1.0/NPCDTools/R/NPC.R | 360 ++++++------ NPCDTools-1.1.0/NPCDTools/R/PAR.R | 4 NPCDTools-1.1.0/NPCDTools/R/Q.completeness.R |only NPCDTools-1.1.0/NPCDTools/R/Q.generate.R |only NPCDTools-1.1.0/NPCDTools/R/Q.implausible.R |only NPCDTools-1.1.0/NPCDTools/R/Q.improper.R |only NPCDTools-1.1.0/NPCDTools/R/QR.R | 150 +++-- NPCDTools-1.1.0/NPCDTools/R/RR.R | 14 NPCDTools-1.1.0/NPCDTools/R/TSQE.R | 154 ++--- NPCDTools-1.1.0/NPCDTools/R/bestQperm.R | 27 NPCDTools-1.1.0/NPCDTools/R/correction_rate.R | 9 NPCDTools-1.1.0/NPCDTools/R/data.R |only NPCDTools-1.1.0/NPCDTools/R/distractor.check.R |only NPCDTools-1.1.0/NPCDTools/R/internal_functions.R | 354 ++++++------ NPCDTools-1.1.0/NPCDTools/R/plot.R |only NPCDTools-1.1.0/NPCDTools/R/retention_rate.R | 4 NPCDTools-1.1.0/NPCDTools/R/run_gnpc_app.R |only NPCDTools-1.1.0/NPCDTools/build |only NPCDTools-1.1.0/NPCDTools/data |only NPCDTools-1.1.0/NPCDTools/inst |only NPCDTools-1.1.0/NPCDTools/man/AAR.Rd | 7 NPCDTools-1.1.0/NPCDTools/man/GNPC.Rd | 138 +++- NPCDTools-1.1.0/NPCDTools/man/NPC.Rd | 200 ++----- NPCDTools-1.1.0/NPCDTools/man/PAR.Rd | 6 NPCDTools-1.1.0/NPCDTools/man/Q.completeness.Rd |only NPCDTools-1.1.0/NPCDTools/man/Q.generate.Rd | 30 - NPCDTools-1.1.0/NPCDTools/man/Q.implausible.Rd |only NPCDTools-1.1.0/NPCDTools/man/Q.improper.Rd |only NPCDTools-1.1.0/NPCDTools/man/QR.Rd | 101 ++- NPCDTools-1.1.0/NPCDTools/man/Q_Ozaki.Rd |only NPCDTools-1.1.0/NPCDTools/man/RR.Rd | 15 NPCDTools-1.1.0/NPCDTools/man/TSQE.Rd | 176 ++---- NPCDTools-1.1.0/NPCDTools/man/bestQperm.Rd | 19 NPCDTools-1.1.0/NPCDTools/man/correction.rate.Rd | 9 NPCDTools-1.1.0/NPCDTools/man/distractor.check.Rd |only NPCDTools-1.1.0/NPCDTools/man/plot.GNPC.Rd |only NPCDTools-1.1.0/NPCDTools/man/print.GNPC.Rd |only NPCDTools-1.1.0/NPCDTools/man/print.NPC.Rd |only NPCDTools-1.1.0/NPCDTools/man/print.Q.completeness.Rd |only NPCDTools-1.1.0/NPCDTools/man/print.Qrefine.Rd |only NPCDTools-1.1.0/NPCDTools/man/print.distractor.check.Rd |only NPCDTools-1.1.0/NPCDTools/man/retention.rate.Rd | 5 NPCDTools-1.1.0/NPCDTools/man/run_gnpc_app.Rd |only 51 files changed, 1397 insertions(+), 960 deletions(-)
Title: Maximizing Polyclonal Selection Gains Using Integer Programming
Description: Implements an Integer Programming-based method for optimising genetic gain in polyclonal selection, where the goal is to select a group of genotypes that jointly meet multi-trait selection criteria. The method uses predictors of genotypic effects obtained from the fitting of mixed models. Its application is demonstrated with grapevine data, but is applicable to other species and breeding contexts. For more details see Surgy et al. (2025) <doi:10.1007/s00122-025-04885-0>.
Author: Sonia Surgy [aut, cre],
Jorge Cadima [aut],
Elsa Goncalves [aut]
Maintainer: Sonia Surgy <soniasurgy@isa.ulisboa.pt>
Diff between maxRgain versions 1.0.2 dated 2025-08-18 and 1.1.0 dated 2026-03-03
DESCRIPTION | 14 - MD5 | 18 - NAMESPACE | 1 NEWS.md |only R/Main.R | 472 ++++++++++++++++++----------------- R/output.R | 68 ++++- inst/doc/maxRgain.Rmd | 628 +++++++++++++++++++++++------------------------ inst/doc/maxRgain.html | 244 +++++++++--------- man/maxRgain-package.Rd | 2 man/update.polyresult.Rd |only vignettes/maxRgain.Rmd | 628 +++++++++++++++++++++++------------------------ 11 files changed, 1083 insertions(+), 992 deletions(-)
Title: Data Source Catalogues Online for Southern Ocean Ecosystem
Research
Description: Obtains lists of files of remote sensing collections for Southern Ocean surface
properties. Commonly used data sources of sea surface temperature, sea ice concentration, and
altimetry products such as sea surface height and sea surface currents are cached in object storage
on the Pawsey Supercomputing Research Centre facility. Patterns of working to retrieve data from these object storage
catalogues are described. The catalogues include complete collections of datasets Reynolds et al. (2008)
"NOAA Optimum Interpolation Sea Surface Temperature (OISST) Analysis, Version 2.1" <doi:10.7289/V5SQ8XB5>,
Spreen et al. (2008) "Artist Advanced Microwave Scanning Radiometer for Earth Observing System (AMSR-E)
sea ice concentration" <doi:10.1029/2005JC003384>. In future releases helpers will be added to identify
particular data collections and target specific dates for earth observation data for reading, as well as
helpers to retrieve data set citation and provenance details. This wor [...truncated...]
Author: Michael D. Sumner [aut, cre],
Aleks Terauds [cph, ctb] ')
Maintainer: Michael D. Sumner <michael.sumner@aad.gov.au>
Diff between sooty versions 0.5.0 dated 2025-05-22 and 0.6.0 dated 2026-03-03
DESCRIPTION | 13 +++++++------ MD5 | 25 ++++++++++++++----------- NAMESPACE | 4 +++- NEWS.md | 12 +++++++++++- R/000-cache.R |only R/datasource.R | 20 +++++++++----------- R/objects.R | 38 ++++++++++++-------------------------- R/sysdata.rda |only R/utils.R | 4 ++-- R/zzz.R | 2 -- man/available_datasets.Rd | 2 ++ man/datasource.Rd | 8 +++++--- man/sooty_cache_info.Rd |only man/sooty_files.Rd | 12 +++++------- tests/testthat/test-files.R | 2 +- 15 files changed, 71 insertions(+), 71 deletions(-)
Title: Clustering-Informed Shared-Structure VAE for Imputation
Description: Implements the Clustering-Informed Shared-Structure Variational Autoencoder ('CISS-VAE'), a deep learning framework for missing data imputation introduced in Khadem Charvadeh et al. (2025) <doi:10.1002/sim.70335>. The model accommodates all three types of missing data mechanisms: Missing Completely At Random (MCAR), Missing At Random (MAR), and Missing Not At Random (MNAR). While it is particularly well-suited to MNAR scenarios, where missingness patterns carry informative signals, 'CISS-VAE' also functions effectively under MAR assumptions.
Author: Yasin Khadem Charvadeh [aut],
Kenneth Seier [aut],
Katherine S. Panageas [aut],
Danielle Vaithilingam [aut, cre],
Mithat Goenen [aut],
Yuan Chen [aut]
Maintainer: Danielle Vaithilingam <vaithid1@mskcc.org>
Diff between rCISSVAE versions 0.0.4 dated 2026-01-23 and 0.0.5 dated 2026-03-03
DESCRIPTION | 8 MD5 | 71 ++--- NAMESPACE | 5 R/autotune_cissvae.R | 22 - R/cluster_fun.R | 18 - R/performance.R | 408 ++++++++++++++++++++--------- R/run_cissvae.R | 20 - R/save_load_models.R |only build/vignette.rds |binary inst/doc/binary_variables_tutorial.html | 4 inst/doc/do_not_impute_matrix.html | 4 inst/doc/do_not_impute_matrix.rmd | 2 inst/doc/impute_with_saved_model.R | 54 --- inst/doc/impute_with_saved_model.html | 100 +++---- inst/doc/impute_with_saved_model.rmd | 88 ++---- inst/doc/optunadb.html | 4 inst/doc/summary_functions.html | 46 --- inst/doc/vignette.html | 4 inst/doc/virtual_environment_tutorial.html | 4 man/autotune_cissvae.Rd | 9 man/check_devices.Rd | 46 +-- man/cluster_on_missing.Rd | 5 man/cluster_on_missing_prop.Rd | 194 ++++++------- man/cluster_summary.Rd | 136 ++++----- man/clusters.Rd | 56 +-- man/create_cissvae_env.Rd | 84 ++--- man/create_missingness_prop_matrix.Rd | 136 ++++----- man/df_missing.Rd | 64 ++-- man/dni.Rd | 50 +-- man/impute_with_cissvae.Rd |only man/load_cissvae_model.Rd |only man/mock_surv.Rd | 50 +-- man/performance_by_cluster.Rd | 140 +++++---- man/plot_vae_architecture.Rd | 180 ++++++------ man/run_cissvae.Rd | 11 man/save_cissvae_model.Rd |only tests/testthat/test-save_load.R |only vignettes/do_not_impute_matrix.rmd | 2 vignettes/impute_with_saved_model.rmd | 88 ++---- 39 files changed, 1122 insertions(+), 991 deletions(-)
Title: Model Agnostic Prediction Intervals
Description: Provides tools for estimating model-agnostic prediction intervals using conformal prediction, bootstrapping, and parametric prediction intervals. The package is designed for ease of use, offering intuitive functions for both binned and full conformal prediction methods, as well as parametric interval estimation with diagnostic checks. Currently only working for continuous predictions. For details on the conformal and bin-conditional conformal prediction methods, see Randahl, Williams, and Hegre (2026) <DOI:10.1017/pan.2025.10010>.
Author: David Randahl [aut, cre],
Jonathan P. Williams [ctb],
Anders Hjort [ctb]
Maintainer: David Randahl <david.randahl@pcr.uu.se>
Diff between pintervals versions 1.0.1 dated 2026-01-11 and 1.1.1 dated 2026-03-03
pintervals-1.0.1/pintervals/inst/doc/main.pdf |only pintervals-1.0.1/pintervals/inst/doc/main.pdf.asis |only pintervals-1.0.1/pintervals/vignettes/main.pdf.asis |only pintervals-1.1.1/pintervals/DESCRIPTION | 12 pintervals-1.1.1/pintervals/MD5 | 131 +-- pintervals-1.1.1/pintervals/R/data.R | 4 pintervals-1.1.1/pintervals/R/helpers.R | 378 ++++++++-- pintervals-1.1.1/pintervals/R/metrics.R | 132 +++ pintervals-1.1.1/pintervals/R/pinterval_bccp.R | 199 +++-- pintervals-1.1.1/pintervals/R/pinterval_bootstrap.R | 158 ++-- pintervals-1.1.1/pintervals/R/pinterval_ccp.R | 260 ++++-- pintervals-1.1.1/pintervals/R/pinterval_conformal.R | 176 ++-- pintervals-1.1.1/pintervals/R/pinterval_mondrian.R | 196 ++--- pintervals-1.1.1/pintervals/R/pinterval_parametric.R | 132 ++- pintervals-1.1.1/pintervals/build/vignette.rds |binary pintervals-1.1.1/pintervals/inst/doc/pintervals.R |only pintervals-1.1.1/pintervals/inst/doc/pintervals.Rmd |only pintervals-1.1.1/pintervals/inst/doc/pintervals.html |only pintervals-1.1.1/pintervals/man/Dm_finder.Rd | 5 pintervals-1.1.1/pintervals/man/abs_error.Rd | 1 pintervals-1.1.1/pintervals/man/bcss_compute.Rd | 5 pintervals-1.1.1/pintervals/man/bin_chopper.Rd | 5 pintervals-1.1.1/pintervals/man/bindividual_alpha.Rd | 5 pintervals-1.1.1/pintervals/man/bootstrap_inner.Rd | 15 pintervals-1.1.1/pintervals/man/cauchy_kern.Rd | 1 pintervals-1.1.1/pintervals/man/ch_index.Rd | 5 pintervals-1.1.1/pintervals/man/class_to_clusters.Rd | 5 pintervals-1.1.1/pintervals/man/clusterer.Rd | 5 pintervals-1.1.1/pintervals/man/contiguize_intervals.Rd | 5 pintervals-1.1.1/pintervals/man/county_turnout.Rd | 2 pintervals-1.1.1/pintervals/man/coverage_gap_finder.Rd | 5 pintervals-1.1.1/pintervals/man/dm_to_prob.Rd | 5 pintervals-1.1.1/pintervals/man/elections.Rd | 2 pintervals-1.1.1/pintervals/man/flatten_cp_bin_intervals.Rd | 5 pintervals-1.1.1/pintervals/man/gauss_kern.Rd | 1 pintervals-1.1.1/pintervals/man/grid_finder.Rd | 5 pintervals-1.1.1/pintervals/man/grid_inner.Rd | 5 pintervals-1.1.1/pintervals/man/heterogeneous_error.Rd | 1 pintervals-1.1.1/pintervals/man/interval_coverage.Rd | 2 pintervals-1.1.1/pintervals/man/interval_miscoverage.Rd | 2 pintervals-1.1.1/pintervals/man/interval_score.Rd | 2 pintervals-1.1.1/pintervals/man/interval_width.Rd | 2 pintervals-1.1.1/pintervals/man/kmeans_cluster_qecdf.Rd | 5 pintervals-1.1.1/pintervals/man/ks_cluster.Rd | 5 pintervals-1.1.1/pintervals/man/ks_cluster_assignment_step.Rd | 5 pintervals-1.1.1/pintervals/man/ks_cluster_init_step.Rd | 5 pintervals-1.1.1/pintervals/man/logistic_kern.Rd | 1 pintervals-1.1.1/pintervals/man/minq_to_alpha.Rd | 5 pintervals-1.1.1/pintervals/man/ncs_compute.Rd | 3 pintervals-1.1.1/pintervals/man/optimize_clusters.Rd | 5 pintervals-1.1.1/pintervals/man/pinterval_bccp.Rd | 4 pintervals-1.1.1/pintervals/man/pinterval_bootstrap.Rd | 4 pintervals-1.1.1/pintervals/man/pinterval_ccp.Rd | 10 pintervals-1.1.1/pintervals/man/pinterval_mondrian.Rd | 4 pintervals-1.1.1/pintervals/man/pinterval_parametric.Rd | 2 pintervals-1.1.1/pintervals/man/pintervals-package.Rd | 2 pintervals-1.1.1/pintervals/man/raw_error.Rd | 1 pintervals-1.1.1/pintervals/man/reciprocal_linear_kern.Rd | 1 pintervals-1.1.1/pintervals/man/rel_error.Rd | 5 pintervals-1.1.1/pintervals/man/resolve_weight_function.Rd |only pintervals-1.1.1/pintervals/man/validate_distance_inputs.Rd |only pintervals-1.1.1/pintervals/man/wcss_compute.Rd | 5 pintervals-1.1.1/pintervals/man/za_rel_error.Rd | 5 pintervals-1.1.1/pintervals/src/cpp_dists.cpp | 7 pintervals-1.1.1/pintervals/tests |only pintervals-1.1.1/pintervals/vignettes/pintervals.Rmd |only pintervals-1.1.1/pintervals/vignettes/pintervals.bib |only 67 files changed, 1307 insertions(+), 651 deletions(-)
Title: Component-Wise Gradient Boosting after Multiple Imputation
Description: Component-wise gradient boosting for analysis of multiply
imputed datasets. Implements the algorithm Boosting after Multiple
Imputation (MIBoost), which enforces uniform variable selection across
imputations and provides utilities for pooling. Includes a cross-validation
workflow that first splits the data into training and validation sets and
then performs imputation on the training data, applying the learned
imputation models to the validation data to avoid information leakage.
Supports Gaussian and logistic loss. Methods relate to gradient boosting
and multiple imputation as in Buehlmann and Hothorn (2007) <doi:10.1214/07-STS242>,
Friedman (2001) <doi:10.1214/aos/1013203451>, and van Buuren (2018, ISBN:9781138588318)
and Groothuis-Oudshoorn (2011) <doi:10.18637/jss.v045.i03>; see also Kuchen (2025)
<doi:10.48550/arXiv.2507.21807>.
Author: Robert Kuchen [aut, cre]
Maintainer: Robert Kuchen <rokuchen@uni-mainz.de>
Diff between booami versions 0.1.2 dated 2026-02-19 and 0.1.3 dated 2026-03-03
DESCRIPTION | 6 +++--- LICENSE | 2 +- MD5 | 10 +++++----- R/cv_boost.R | 10 ++++++++-- man/cv_boost_imputed.Rd | 10 ++++++++-- man/cv_boost_raw.Rd | 4 ++-- 6 files changed, 27 insertions(+), 15 deletions(-)
Title: Signal Detection Analysis
Description: Exploring time series for signal detection. It is specifically designed
to detect possible outbreaks using infectious disease surveillance data
at the European Union / European Economic Area or country level.
Automatic detection tools used are presented in the paper
"Monitoring count time series in R: aberration detection in public health surveillance",
by Salmon (2016) <doi:10.18637/jss.v070.i10>.
The package includes:
- Signal Detection tool, an interactive 'shiny' application
in which the user can import external data and perform basic signal detection analyses;
- An automated report in HTML format, presenting the results of the time series analysis in tables and graphs.
This report can also be stratified by population characteristics (see 'Population' variable).
This project was funded by the European Centre for Disease Prevention and Control.
Author: Lore Merdrignac [aut, ctr, cre] ,
Joana Gomes Dias [aut, fnd] ,
Esther Kissling [aut, ctr],
Tommi Karki [aut, fnd],
Margot Einoder-Moreno [ctb, fnd]
Maintainer: Lore Merdrignac <l.merdrignac@epiconcept.fr>
Diff between EpiSignalDetection versions 0.1.2 dated 2021-11-30 and 0.1.3 dated 2026-03-03
EpiSignalDetection-0.1.2/EpiSignalDetection/inst/SignalDetectionApp/www/desktop.ini |only EpiSignalDetection-0.1.3/EpiSignalDetection/DESCRIPTION | 10 EpiSignalDetection-0.1.3/EpiSignalDetection/MD5 | 39 EpiSignalDetection-0.1.3/EpiSignalDetection/NEWS.md | 19 EpiSignalDetection-0.1.3/EpiSignalDetection/R/data.R | 2 EpiSignalDetection-0.1.3/EpiSignalDetection/R/internal_functions.R | 6 EpiSignalDetection-0.1.3/EpiSignalDetection/R/runEpiSDApp.R | 2 EpiSignalDetection-0.1.3/EpiSignalDetection/R/runEpiSDReport.R | 2 EpiSignalDetection-0.1.3/EpiSignalDetection/build/vignette.rds |binary EpiSignalDetection-0.1.3/EpiSignalDetection/inst/StratifiedSignalDetectionReport_HTML/StratifiedSignalDetectionReport.Rmd | 4 EpiSignalDetection-0.1.3/EpiSignalDetection/inst/doc/EpiSignalDetection_Vignette.R | 128 - EpiSignalDetection-0.1.3/EpiSignalDetection/inst/doc/EpiSignalDetection_Vignette.Rmd | 4 EpiSignalDetection-0.1.3/EpiSignalDetection/inst/doc/EpiSignalDetection_Vignette.html | 874 +++++++--- EpiSignalDetection-0.1.3/EpiSignalDetection/man/SignalData.Rd | 2 EpiSignalDetection-0.1.3/EpiSignalDetection/man/cleanAtlasExport.Rd | 2 EpiSignalDetection-0.1.3/EpiSignalDetection/man/importAtlasExport.Rd | 2 EpiSignalDetection-0.1.3/EpiSignalDetection/man/runEpiSDApp.Rd | 2 EpiSignalDetection-0.1.3/EpiSignalDetection/man/runEpiSDReport.Rd | 2 EpiSignalDetection-0.1.3/EpiSignalDetection/vignettes/EpiSignalDetection_Vignette.Rmd | 4 EpiSignalDetection-0.1.3/EpiSignalDetection/vignettes/plots/plot_time_series.png |binary EpiSignalDetection-0.1.3/EpiSignalDetection/vignettes/plots/plot_time_series_external.png |binary 21 files changed, 751 insertions(+), 353 deletions(-)
More information about EpiSignalDetection at CRAN
Permanent link
Title: Extract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format
Images
Description: Extracts colors from various image types, returns customized reports and plots treemaps
and 3D scatterplots of image compositions. Color palettes can also be created.
Author: David Zumbach [aut, cre]
Maintainer: David Zumbach <david.zumbach@gfzb.ch>
Diff between colorfindr versions 0.1.5 dated 2025-04-29 and 0.1.6 dated 2026-03-03
DESCRIPTION | 8 ++++---- LICENSE |only MD5 | 11 ++++++----- NAMESPACE | 2 +- NEWS | 6 ++++++ R/plot_colors_3D.R | 4 ++-- R/utils.R | 12 ++++++------ 7 files changed, 25 insertions(+), 18 deletions(-)
Title: Cohort Generation for the OMOP Common Data Model
Description: Generate cohorts and subsets using an Observational
Medical Outcomes Partnership (OMOP) Common Data Model (CDM) Database.
Cohorts are defined using 'CIRCE' (<https://github.com/ohdsi/circe-be>) or
SQL compatible with 'SqlRender' (<https://github.com/OHDSI/SqlRender>).
Author: Anthony Sena [aut, cre],
Jamie Gilbert [aut],
Gowtham Rao [aut],
Freddy Avila Cruz [aut],
Martijn Schuemie [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Anthony Sena <sena@ohdsi.org>
Diff between CohortGenerator versions 1.0.2 dated 2026-02-10 and 1.1.0 dated 2026-03-03
DESCRIPTION | 8 MD5 | 45 +- NAMESPACE | 2 NEWS.md | 7 R/CohortConstruction.R | 1 R/CohortStats.R | 204 +++++++++++- R/CohortTables.R | 5 R/Export.R | 117 ++++++ R/RunCohortGeneration.R | 12 R/SubsetDefinitions.R | 27 + inst/csv/resultsDataModelSpecification.csv | 21 + inst/doc/CreatingCohortSubsetDefinitions.html | 4 inst/doc/GeneratingCohorts.pdf |binary inst/doc/SamplingCohorts.pdf |binary inst/doc/UsingTemplateCohorts.html | 9 inst/sql/sql_server/CreateCohortTables.sql | 16 inst/sql/sql_server/migrations/Migration_4-v1.1.0.sql |only inst/sql/sql_server/subsets/CohortSubsetAttritionInsert.sql |only inst/testdata/Results_Eunomia.zip |binary man/computeCohortAttrition.Rd |only man/exportCohortSubsetStatsTables.Rd |only man/getCohortStats.Rd | 13 man/getCohortTableNames.Rd | 3 tests/testthat/test-CohortStats.R |only tests/testthat/test-CohortTables.R | 5 tests/testthat/test-Export.R | 78 ++++ 26 files changed, 527 insertions(+), 50 deletions(-)
More information about CohortGenerator at CRAN
Permanent link
Title: Cumulative History Analysis for Bistable Perception Time Series
Description: Estimates cumulative history for time-series for continuously
viewed bistable perceptual rivalry displays. Computes cumulative history
via a homogeneous first order differential process. I.e., it assumes
exponential growth/decay of the history as a function time and perceptually
dominant state, Pastukhov & Braun (2011) <doi:10.1167/11.10.12>.
Supports Gamma, log normal, and normal distribution families.
Provides a method to compute history directly and example of using the
computation on a custom Stan code.
Author: Alexander Pastukhov [aut, cre]
Maintainer: Alexander Pastukhov <pastukhov.alexander@gmail.com>
Diff between bistablehistory versions 1.1.3 dated 2025-10-11 and 1.1.4 dated 2026-03-03
DESCRIPTION | 9 MD5 | 44 +-- NAMESPACE | 3 NEWS.md | 43 +-- R/bayes_R2.R | 100 +++---- R/bistablehistory-package.R | 2 R/coef.R | 90 +++--- R/fit_cumhist.R | 544 +++++++++++++++++++-------------------- R/fixef.R | 173 ++++++------ R/history_parameter.R | 348 ++++++++++++------------ R/historyef.R | 136 ++++----- R/loo.R | 48 +-- R/preprocess_data.R | 386 +++++++++++++-------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/cumulative-history.R | 13 inst/doc/cumulative-history.Rmd | 189 ++++++------- inst/doc/cumulative-history.html | 10 inst/doc/usage-examples.R | 1 inst/doc/usage-examples.Rmd | 411 ++++++++++++++--------------- inst/doc/usage-examples.html | 21 - vignettes/cumulative-history.Rmd | 189 ++++++------- vignettes/usage-examples.Rmd | 411 ++++++++++++++--------------- 23 files changed, 1581 insertions(+), 1590 deletions(-)
More information about bistablehistory at CRAN
Permanent link
Title: Simulation-Based Calculation of Basket Trial Operating
Characteristics
Description: Provides a unified syntax for the simulation-based comparison of
different single-stage basket trial designs with a binary endpoint and equal
sample sizes in all baskets. Methods include the designs by
Baumann et al. (2025) <doi:10.1080/19466315.2024.2402275>,
Schmitt and Baumann (2025) <doi:10.1080/19466315.2025.2486231>,
Fujikawa et al. (2020) <doi:10.1002/bimj.201800404>,
Berry et al. (2020) <doi:10.1177/1740774513497539>, and
Neuenschwander et al. (2016) <doi:10.1002/pst.1730>. For the
latter two designs, the functions are mostly
wrappers for functions provided by the package 'bhmbasket'.
Author: Lukas Baumann [aut, cre] ,
Lukas D Sauer [aut] ,
Sabrina Schmitt [aut]
Maintainer: Lukas Baumann <baumann@imbi.uni-heidelberg.de>
Diff between basksim versions 2.0.2 dated 2026-02-20 and 2.1.0 dated 2026-03-03
DESCRIPTION | 10 ++++----- MD5 | 10 ++++----- R/get_details.R | 21 +++++++++--------- R/get_evaluation.R | 5 +--- tests/testthat/test-adjust_lambda.R | 40 ++++++++++++++++++------------------ tests/testthat/test-get_details.R | 16 +++++++------- 6 files changed, 50 insertions(+), 52 deletions(-)
Title: Computational Test for Conditional Independence
Description: Tool for performing computational testing for conditional independence between variables in a dataset. 'CCI' implements permutation in combination with Monte Carlo Cross-Validation in generating null distributions and test statistics. For more details see Computational Test for Conditional Independence (2024) <doi:10.3390/a17080323>.
Author: Christian Thorjussen [aut, cre] ,
Kristian Hovde Liland [aut]
Maintainer: Christian Thorjussen <christianbern@gmail.com>
Diff between CCI versions 0.3.6 dated 2026-01-21 and 0.3.6.1 dated 2026-03-03
DESCRIPTION | 8 - MD5 | 24 ++-- NAMESPACE | 1 R/test.gen.R | 59 ++++++----- R/utils.R | 169 ++++++++++++++++++++++------------ R/wrappers.R | 2 inst/doc/Testing-CI-with-CCI.html | 8 - man/is_categorical_Z_any.Rd | 7 + man/make_strata_from_categorical_Z.Rd | 15 ++- man/permute_within_strata.Rd | 8 + man/test.gen.Rd | 1 man/unclean_formula.Rd | 4 tests/testthat/dev.R | 80 ++++++++++++---- 13 files changed, 255 insertions(+), 131 deletions(-)
Title: Create Interactive Gantt Charts with Work Breakdown Structure
Description: Create Primavera-style interactive Gantt charts with Work Breakdown
Structure (WBS) hierarchy and activities. Features include color-coded WBS
items, indented labels, scrollable views for large projects, dynamic date
formatting, and the ability to dim past activities. Built on top of 'plotly'
for interactive visualizations.
Author: Ahmed Aredah [aut, cre]
Maintainer: Ahmed Aredah <Ahmed.Aredah@gmail.com>
Diff between ganttify versions 0.2.2 dated 2026-02-25 and 0.2.5 dated 2026-03-03
DESCRIPTION | 6 +- MD5 | 14 ++-- NEWS.md | 40 +++++++++++++ R/Ganttify.R | 151 ++++++++++++++++++++++++++++++++++++---------------- R/data.R | 8 +- README.md | 3 - man/Ganttify.Rd | 33 ++++++----- man/test_project.Rd | 8 +- 8 files changed, 183 insertions(+), 80 deletions(-)
Title: Extract and Visualize the Results of Multivariate Data Analyses
Description: Provides easy-to-use functions to extract and visualize the output
of multivariate data analyses, including 'PCA' (Principal Component Analysis),
'CA' (Correspondence Analysis), 'MCA' (Multiple Correspondence Analysis),
'FAMD' (Factor Analysis of Mixed Data), 'MFA' (Multiple Factor Analysis),
and 'HMFA' (Hierarchical Multiple Factor Analysis) from different R packages.
It also includes helpers for simplifying clustering analysis workflows and
provides 'ggplot2'-based data visualization.
Author: Alboukadel Kassambara [aut, cre] ,
Fabian Mundt [aut],
Laszlo Erdey [ctb]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between factoextra versions 1.0.7 dated 2020-04-01 and 2.0.0 dated 2026-03-03
DESCRIPTION | 56 MD5 | 167 +- NAMESPACE | 3 NEWS.md | 64 + R/deprecated.R | 129 +- R/dist.R | 20 R/eclust.R | 12 R/eigenvalue.R | 140 +- R/facto_summarize.R | 111 + R/fviz.R | 133 +- R/fviz_add.R | 31 R/fviz_ca.R | 17 R/fviz_cluster.R | 121 +- R/fviz_contrib.R | 10 R/fviz_cos2.R | 3 R/fviz_dend.R | 80 - R/fviz_ellipses.R | 2 R/fviz_famd.R | 11 R/fviz_hmfa.R | 25 R/fviz_mca.R | 16 R/fviz_mclust.R | 33 R/fviz_mfa.R | 73 - R/fviz_nbclust.R | 168 +- R/fviz_pca.R | 105 + R/fviz_silhouette.R | 27 R/get_ca.R | 106 - R/get_clust_tendency.R | 163 ++ R/get_famd.R | 4 R/get_hmfa.R | 12 R/get_mca.R | 39 R/get_mfa.R | 12 R/get_pca.R | 150 +- R/hcut.R | 20 R/hkmeans.R | 14 R/print.factoextra.R | 2 R/utilities.R | 576 +++++++-- R/zzz.R | 95 + README.md | 604 +++++----- inst |only man/clean_lock_files.Rd |only man/deprecated.Rd | 32 man/dist.Rd | 2 man/eclust.Rd | 2 man/eigenvalue.Rd | 46 man/facto_summarize.Rd | 2 man/factominer_category_map.Rd |only man/fviz.Rd | 9 man/fviz_add.Rd | 7 man/fviz_ca.Rd | 15 man/fviz_cluster.Rd | 5 man/fviz_contrib.Rd | 9 man/fviz_cos2.Rd | 5 man/fviz_ellipses.Rd | 4 man/fviz_famd.Rd | 11 man/fviz_hmfa.Rd | 19 man/fviz_mca.Rd | 13 man/fviz_mclust.Rd | 15 man/fviz_mfa.Rd | 23 man/fviz_nbclust.Rd | 40 man/fviz_pca.Rd | 54 man/fviz_silhouette.Rd | 10 man/get_ca.Rd | 2 man/get_clust_tendency.Rd | 36 man/get_mca.Rd | 2 man/get_pca.Rd | 2 man/hcut.Rd | 7 man/hkmeans.Rd | 5 man/map_factominer_legacy_names.Rd |only tests |only tools/README-correspondence-analysis-biplot-1.png |binary tools/README-determine-the-number-of-clusters-gap-statistics-1.png |binary tools/README-hierarchical-clustering-1.png |binary tools/README-individuals-factor-map-color-by-groups-1.png |binary tools/README-mca-biplot-1.png |binary tools/README-mca-graph-of-individuals-1.png |binary tools/README-mca-graph-variables-1.png |binary tools/README-partitioning-clustering-1.png |binary tools/README-pca-eigenvalue-1.png |binary tools/README-pca-variable-colors-by-contributions-1.png |binary tools/README-pca-variable-contributions-1.png |binary tools/README-pca-variable-contributions-2.png |binary tools/README-pca-variables-1.png |binary tools/README-principal-component-analysis-data-mining-1.png |binary tools/README-principal-component-analysis-data-mining-2.png |binary 84 files changed, 2398 insertions(+), 1333 deletions(-)
Title: Optimal Pairing and Matching via Linear Assignment
Description: Solves optimal pairing and matching problems using linear assignment
algorithms. Provides implementations of the Hungarian method (Kuhn 1955)
<doi:10.1002/nav.3800020109>, Jonker-Volgenant shortest path algorithm
(Jonker and Volgenant 1987) <doi:10.1007/BF02278710>, Auction algorithm
(Bertsekas 1988) <doi:10.1007/BF02186476>, cost-scaling
(Goldberg and Kennedy 1995) <doi:10.1007/BF01585996>, scaling algorithms
(Gabow and Tarjan 1989) <doi:10.1137/0218069>, push-relabel (Goldberg and
Tarjan 1988) <doi:10.1145/48014.61051>, and Sinkhorn entropy-regularized
transport (Cuturi 2013) <doi:10.48550/arxiv.1306.0895>. Designed for
matching plots, sites, samples, or any pairwise optimization problem.
Supports rectangular matrices, forbidden assignments, data frame inputs,
batch solving, k-best solutions, and pixel-level image morphing for
visualization. Includes automatic preprocessing with variable health
checks, multiple scaling methods (standardized, [...truncated...]
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between couplr versions 1.0.8 dated 2026-01-21 and 1.1.0 dated 2026-03-03
couplr-1.0.8/couplr/man/pipe.Rd |only couplr-1.1.0/couplr/DESCRIPTION | 15 couplr-1.1.0/couplr/MD5 | 125 couplr-1.1.0/couplr/NAMESPACE | 12 couplr-1.1.0/couplr/R/couplr-package.R | 15 couplr-1.1.0/couplr/R/matching_cardinality.R |only couplr-1.1.0/couplr/R/matching_core.R | 1377 +++++----- couplr-1.1.0/couplr/R/matching_parallel.R | 196 - couplr-1.1.0/couplr/R/matching_plots.R |only couplr-1.1.0/couplr/R/matching_propensity.R |only couplr-1.1.0/couplr/R/matching_sensitivity.R |only couplr-1.1.0/couplr/R/morph_utils.R | 6 couplr-1.1.0/couplr/README.md | 4 couplr-1.1.0/couplr/inst/CITATION | 2 couplr-1.1.0/couplr/inst/WORDLIST |only couplr-1.1.0/couplr/inst/doc/algorithms.R | 30 couplr-1.1.0/couplr/inst/doc/algorithms.Rmd | 62 couplr-1.1.0/couplr/inst/doc/algorithms.html | 78 couplr-1.1.0/couplr/inst/doc/comparison.R | 24 couplr-1.1.0/couplr/inst/doc/comparison.Rmd | 49 couplr-1.1.0/couplr/inst/doc/comparison.html | 453 +-- couplr-1.1.0/couplr/inst/doc/getting-started.R | 2 couplr-1.1.0/couplr/inst/doc/getting-started.Rmd | 2 couplr-1.1.0/couplr/inst/doc/getting-started.html | 25 couplr-1.1.0/couplr/inst/doc/matching-workflows.R | 42 couplr-1.1.0/couplr/inst/doc/matching-workflows.Rmd | 58 couplr-1.1.0/couplr/inst/doc/matching-workflows.html | 74 couplr-1.1.0/couplr/inst/doc/pixel-morphing.Rmd | 172 - couplr-1.1.0/couplr/inst/doc/pixel-morphing.html | 174 - couplr-1.1.0/couplr/inst/doc/troubleshooting.R | 25 couplr-1.1.0/couplr/inst/doc/troubleshooting.Rmd | 27 couplr-1.1.0/couplr/inst/doc/troubleshooting.html | 189 - couplr-1.1.0/couplr/man/autoplot.balance_diagnostics.Rd |only couplr-1.1.0/couplr/man/autoplot.matching_result.Rd |only couplr-1.1.0/couplr/man/autoplot.sensitivity_analysis.Rd |only couplr-1.1.0/couplr/man/cardinality_match.Rd |only couplr-1.1.0/couplr/man/couplr-package.Rd | 2 couplr-1.1.0/couplr/man/dot-autoplot_hist.Rd |only couplr-1.1.0/couplr/man/dot-autoplot_love.Rd |only couplr-1.1.0/couplr/man/dot-autoplot_variance.Rd |only couplr-1.1.0/couplr/man/dot-blocks_parallel.Rd |only couplr-1.1.0/couplr/man/dot-compute_pair_balance.Rd |only couplr-1.1.0/couplr/man/dot-couples_blocked.Rd |only couplr-1.1.0/couplr/man/dot-couples_from_distance.Rd |only couplr-1.1.0/couplr/man/dot-couples_ratio.Rd |only couplr-1.1.0/couplr/man/dot-couples_replace.Rd |only couplr-1.1.0/couplr/man/dot-couples_single.Rd |only couplr-1.1.0/couplr/man/dot-pair_var_diffs.Rd |only couplr-1.1.0/couplr/man/dot-rosenbaum_bounds.Rd |only couplr-1.1.0/couplr/man/greedy_couples.Rd | 8 couplr-1.1.0/couplr/man/greedy_couples_blocked.Rd | 4 couplr-1.1.0/couplr/man/greedy_couples_single.Rd | 4 couplr-1.1.0/couplr/man/match_couples.Rd | 8 couplr-1.1.0/couplr/man/match_couples_blocked.Rd | 4 couplr-1.1.0/couplr/man/match_couples_single.Rd | 4 couplr-1.1.0/couplr/man/plot.sensitivity_analysis.Rd |only couplr-1.1.0/couplr/man/print.sensitivity_analysis.Rd |only couplr-1.1.0/couplr/man/ps_match.Rd |only couplr-1.1.0/couplr/man/sensitivity_analysis.Rd |only couplr-1.1.0/couplr/man/summary.sensitivity_analysis.Rd |only couplr-1.1.0/couplr/src/solvers/solve_auction.cpp | 50 couplr-1.1.0/couplr/src/solvers/solve_auction_rcpp.cpp | 27 couplr-1.1.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleH.R | 54 couplr-1.1.0/couplr/tests/testthat/helper-gabow_tarjan.R |only couplr-1.1.0/couplr/tests/testthat/test-autoplot.R |only couplr-1.1.0/couplr/tests/testthat/test-cardinality.R |only couplr-1.1.0/couplr/tests/testthat/test-coverage-95.R | 5 couplr-1.1.0/couplr/tests/testthat/test-gabow_tarjan_solver.R | 49 couplr-1.1.0/couplr/tests/testthat/test-matching-ratio.R |only couplr-1.1.0/couplr/tests/testthat/test-matching-replace.R |only couplr-1.1.0/couplr/tests/testthat/test-morph-coverage-boost.R | 13 couplr-1.1.0/couplr/tests/testthat/test-morph-final-push.R | 13 couplr-1.1.0/couplr/tests/testthat/test-propensity.R |only couplr-1.1.0/couplr/tests/testthat/test-sensitivity.R |only couplr-1.1.0/couplr/tests/testthat/test-summary-enhanced.R |only couplr-1.1.0/couplr/vignettes/algorithms.Rmd | 62 couplr-1.1.0/couplr/vignettes/comparison.Rmd | 49 couplr-1.1.0/couplr/vignettes/getting-started.Rmd | 2 couplr-1.1.0/couplr/vignettes/matching-workflows.Rmd | 58 couplr-1.1.0/couplr/vignettes/pixel-morphing.Rmd | 172 - couplr-1.1.0/couplr/vignettes/troubleshooting.Rmd | 27 81 files changed, 1942 insertions(+), 1911 deletions(-)
Title: Dropout Analysis by Condition
Description: Analysis and visualization of dropout between conditions in surveys and (online) experiments. Features include computation of dropout statistics, comparing dropout between conditions (e.g. Chi squared), analyzing survival (e.g. Kaplan-Meier estimation), comparing conditions with the most different rates of dropout (Kolmogorov-Smirnov) and visualizing the result of each in designated plotting functions. Article published in _Behavior Research Methods_ on 'dropR' by the authors: Dropout analysis: A method for data from Internet-based research and 'dropR', an R-based web app and package to analyze and visualize dropout. (2025) <doi:10.3758/s13428-025-02730-2>. Sources: Andrea Frick, Marie-Terese Baechtiger & Ulf-Dietrich Reips (2001) <doi:10.5167/uzh-19758>; Ulf-Dietrich Reips (2002) <doi:10.1026//1618-3169.49.4.243>.
Author: Annika Tave Overlander [aut, cre] ,
Matthias Bannert [aut],
Ulf-Dietrich Reips [aut]
Maintainer: Annika Tave Overlander <annika-tave.overlander@uni.kn>
Diff between dropR versions 1.0.3 dated 2024-07-03 and 1.0.6 dated 2026-03-03
dropR-1.0.3/dropR/R/compute_odds.R |only dropR-1.0.3/dropR/R/do_steps.R |only dropR-1.0.3/dropR/R/get_steps_by_cond.R |only dropR-1.0.3/dropR/inst/sandbox.R |only dropR-1.0.6/dropR/DESCRIPTION | 28 +- dropR-1.0.6/dropR/MD5 | 76 +++---- dropR-1.0.6/dropR/NAMESPACE | 5 dropR-1.0.6/dropR/NEWS.md | 9 dropR-1.0.6/dropR/R/add_dropout_idx.R | 28 +- dropR-1.0.6/dropR/R/compute_stats.R | 41 ++- dropR-1.0.6/dropR/R/do_chisq.R | 24 +- dropR-1.0.6/dropR/R/do_curve.R | 7 dropR-1.0.6/dropR/R/do_kpm.R | 18 + dropR-1.0.6/dropR/R/do_ks.R | 7 dropR-1.0.6/dropR/R/do_print.R |only dropR-1.0.6/dropR/R/utils.R |only dropR-1.0.6/dropR/README.md | 25 -- dropR-1.0.6/dropR/build/partial.rdb |binary dropR-1.0.6/dropR/build/vignette.rds |binary dropR-1.0.6/dropR/inst/app/rsconnect/shinyapps.io/iscience-kn/dropR.dcf | 3 dropR-1.0.6/dropR/inst/app/server.R | 65 ++++-- dropR-1.0.6/dropR/inst/app/ui.R | 95 +++++--- dropR-1.0.6/dropR/inst/app/www/decrease_white.svg |only dropR-1.0.6/dropR/inst/doc/interactive.R | 13 - dropR-1.0.6/dropR/inst/doc/interactive.Rmd | 30 ++ dropR-1.0.6/dropR/inst/doc/interactive.html | 86 +++++-- dropR-1.0.6/dropR/inst/doc/tests.Rmd | 2 dropR-1.0.6/dropR/inst/doc/tests.html | 108 +++++----- dropR-1.0.6/dropR/man/add_dropout_idx.Rd | 6 dropR-1.0.6/dropR/man/compute_stats.Rd | 5 dropR-1.0.6/dropR/man/do_chisq.Rd | 9 dropR-1.0.6/dropR/man/do_or_table.Rd | 68 +++--- dropR-1.0.6/dropR/man/do_print.Rd |only dropR-1.0.6/dropR/man/do_steps.Rd | 2 dropR-1.0.6/dropR/man/dropR-package.Rd | 10 dropR-1.0.6/dropR/man/figures/README-do_plot_ex-1.png |binary dropR-1.0.6/dropR/man/get_odds.Rd | 2 dropR-1.0.6/dropR/man/get_odds_ratio.Rd | 2 dropR-1.0.6/dropR/man/get_steps_by_cond.Rd | 2 dropR-1.0.6/dropR/man/get_survdiff.Rd | 60 ++--- dropR-1.0.6/dropR/tests |only dropR-1.0.6/dropR/vignettes/interactive.Rmd | 30 ++ dropR-1.0.6/dropR/vignettes/tests.Rmd | 2 43 files changed, 535 insertions(+), 333 deletions(-)
Title: Optimal Confidence Intervals for Visual Testing
Description: Identifies the optimal confidence level to represent the results of a set of pairwise tests as suggested by Armstrong and Poirier (2025) <doi:10.1017/pan.2024.24>.
Author: Dave Armstrong [aut, cre] ,
William Poirier [aut]
Maintainer: Dave Armstrong <davearmstrong.ps@gmail.com>
Diff between VizTest versions 0.6 dated 2025-12-04 and 0.7 dated 2026-03-03
VizTest-0.6/VizTest/inst/doc/viztest_intro_v2.R |only VizTest-0.6/VizTest/inst/doc/viztest_intro_v2.Rmd |only VizTest-0.6/VizTest/inst/doc/viztest_intro_v2.html |only VizTest-0.6/VizTest/vignettes/viztest_intro_v2.Rmd |only VizTest-0.7/VizTest/DESCRIPTION | 6 VizTest-0.7/VizTest/MD5 | 30 VizTest-0.7/VizTest/NAMESPACE | 43 VizTest-0.7/VizTest/R/functions.R | 1059 +++++++++++++- VizTest-0.7/VizTest/build/vignette.rds |binary VizTest-0.7/VizTest/inst/doc/compact_letter_displays.html | 12 VizTest-0.7/VizTest/inst/doc/creating_forest_plots.R |only VizTest-0.7/VizTest/inst/doc/creating_forest_plots.Rmd |only VizTest-0.7/VizTest/inst/doc/creating_forest_plots.html |only VizTest-0.7/VizTest/inst/doc/heatmaps.html | 24 VizTest-0.7/VizTest/inst/doc/significance_brackets.html | 4 VizTest-0.7/VizTest/man/geom_forestpoint.Rd |only VizTest-0.7/VizTest/man/geom_foreststripe.Rd |only VizTest-0.7/VizTest/man/geom_foresttable.Rd |only VizTest-0.7/VizTest/man/get_viztest_levels.Rd |only VizTest-0.7/VizTest/man/gg_forest.Rd |only VizTest-0.7/VizTest/man/plot.gg_forest.Rd |only VizTest-0.7/VizTest/man/reorder_forest.Rd |only VizTest-0.7/VizTest/man/scale_x_foresttable.Rd |only VizTest-0.7/VizTest/vignettes/creating_forest_plots.Rmd |only 24 files changed, 1141 insertions(+), 37 deletions(-)
Title: Textual Data Analysis Package Used by the TXM Software
Description: Statistical exploration of textual corpora using several methods
from French 'Textometrie' (new name of 'Lexicometrie') and French 'Data Analysis' schools.
It includes methods for exploring irregularity of distribution of lexicon features across
text sets or parts of texts (Specificity analysis); multi-dimensional exploration (Factorial analysis), etc.
Those methods are used in the TXM software.
Author: Sylvain Loiseau [aut],
Matthieu Decorde [aut, cre],
Serge Heiden [aut],
Lise Vaudor [aut]
Maintainer: Matthieu Decorde <matthieu.decorde@ens-lyon.fr>
Diff between textometry versions 0.1.6 dated 2022-05-17 and 0.1.7 dated 2026-03-03
textometry-0.1.6/textometry/NEWS.md |only textometry-0.1.7/textometry/DESCRIPTION | 26 ++++++++++++++---- textometry-0.1.7/textometry/MD5 | 13 ++++----- textometry-0.1.7/textometry/data/bfm.rda |binary textometry-0.1.7/textometry/data/robespierre.rda |binary textometry-0.1.7/textometry/inst/CITATION | 4 +- textometry-0.1.7/textometry/man/bfm.Rd | 4 +- textometry-0.1.7/textometry/man/textometry-package.Rd | 2 - 8 files changed, 32 insertions(+), 17 deletions(-)
Title: Collection of Correlation and Association Estimators
Description: Compute correlation and other association matrices from
small to high-dimensional datasets with relative simple functions and
sensible defaults. Includes options for shrinkage and robustness to improve
results in noisy or high-dimensional settings (p >= n), plus convenient
print/plot methods for inspection. Implemented with optimised C++ backends
using BLAS/OpenMP and memory-aware symmetric updates. Works with base
matrices and data frames, returning standard R objects via a consistent S3
interface. Useful across genomics, agriculture, and machine-learning
workflows. Supports Pearson, Spearman, Kendall, distance correlation,
partial correlation, and robust biweight mid-correlation; Bland–Altman
analyses and Lin's concordance correlation coefficient (including
repeated-measures extensions). Methods based on Ledoit and Wolf (2004)
<doi:10.1016/S0047-259X(03)00096-4>; Schäfer and Strimmer (2005)
<doi:10.2202/1544-6115.1175>; Lin (1989) <doi:10.2307/2532051>.
Author: Thiago de Paula Oliveira [aut, cre]
Maintainer: Thiago de Paula Oliveira <thiago.paula.oliveira@gmail.com>
Diff between matrixCorr versions 0.8.3 dated 2025-12-22 and 0.8.4 dated 2026-03-03
DESCRIPTION | 6 MD5 | 104 +- R/distance_corr.R | 9 README.md | 16 inst/WORDLIST | 10 man/abort_bad_arg.Rd | 24 man/abort_internal.Rd | 24 man/biweight_mid_corr.Rd | 520 ++++++------ man/bland_altman.Rd | 286 +++--- man/bland_altman_repeated.Rd | 1122 +++++++++++++------------- man/build_LDZ.Rd | 48 - man/ccc.Rd | 348 ++++---- man/ccc_lmm_reml.Rd | 1588 ++++++++++++++++++------------------- man/ccc_lmm_reml_pairwise.Rd | 90 +- man/ccc_pairwise_u_stat.Rd | 410 ++++----- man/check_ar1_rho.Rd | 24 man/check_bool.Rd | 24 man/check_inherits.Rd | 24 man/check_matrix_dims.Rd | 34 man/check_prob_scalar.Rd | 24 man/check_required_cols.Rd | 24 man/check_same_length.Rd | 34 man/check_scalar_character.Rd | 32 man/check_scalar_int_pos.Rd | 24 man/check_scalar_nonneg.Rd | 24 man/check_scalar_numeric.Rd | 42 man/check_symmetric_matrix.Rd | 32 man/check_weights.Rd | 24 man/compute_ci_from_se.Rd | 24 man/distance_corr.Rd | 303 +++---- man/dot-align_weights_to_levels.Rd | 24 man/dot-ba_rep_two_methods.Rd | 48 - man/dot-vc_message.Rd | 46 - man/estimate_rho.Rd | 62 - man/inform_if_verbose.Rd | 24 man/kendall_tau.Rd | 340 +++---- man/match_arg.Rd | 24 man/matrixCorr-internal.Rd | 122 +- man/num_or_na.Rd | 24 man/num_or_na_vec.Rd | 24 man/partial_correlation.Rd | 558 ++++++------- man/pearson_corr.Rd | 342 +++---- man/print.ccc_ci.Rd | 32 man/print.matrixCorr_ccc.Rd | 44 - man/print.matrixCorr_ccc_ci.Rd | 32 man/run_cpp.Rd | 62 - man/schafer_corr.Rd | 304 +++---- man/spearman_rho.Rd | 424 ++++----- man/summary.ccc_lmm_reml.Rd | 74 - man/view_corr_shiny.Rd | 100 +- src/distance_correlation.cpp | 388 ++++++++- tests/testthat.R | 8 tests/testthat/test-utils.R | 102 +- 53 files changed, 4412 insertions(+), 4094 deletions(-)
Title: Bindings to the Calcite Design System 'JavaScript' Component
Library
Description: Provides access to the 'Calcite Design System' 'javascript'
components via integration with the 'htmltools' and 'shiny' packages.
Pre-built and interactive components can be used to generate either
static html or interactive web applications. Learn more about the
'Calcite Design System' at
<https://developers.arcgis.com/calcite-design-system/>.
Author: Josiah Parry [aut, cre]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between calcite versions 0.1.1 dated 2025-12-03 and 1.0.0 dated 2026-03-03
calcite-0.1.1/calcite/man/calcite_input.Rd |only calcite-0.1.1/calcite/man/calcite_table_cell.Rd |only calcite-0.1.1/calcite/man/calcite_table_row.Rd |only calcite-0.1.1/calcite/man/calcite_tile_select.Rd |only calcite-0.1.1/calcite/man/calcite_tile_select_group.Rd |only calcite-1.0.0/calcite/DESCRIPTION | 14 calcite-1.0.0/calcite/MD5 | 168 calcite-1.0.0/calcite/NAMESPACE | 18 calcite-1.0.0/calcite/NEWS.md | 25 calcite-1.0.0/calcite/R/accordion-item.R |only calcite-1.0.0/calcite/R/accordion.R |only calcite-1.0.0/calcite/R/action-bar.R |only calcite-1.0.0/calcite/R/action-group.R |only calcite-1.0.0/calcite/R/action.R |only calcite-1.0.0/calcite/R/alert.R |only calcite-1.0.0/calcite/R/block.R |only calcite-1.0.0/calcite/R/button.R |only calcite-1.0.0/calcite/R/calcite-package.R |only calcite-1.0.0/calcite/R/checkbox.R |only calcite-1.0.0/calcite/R/components-generated.R | 2265 ---------- calcite-1.0.0/calcite/R/date-picker.R |only calcite-1.0.0/calcite/R/input-file.R |only calcite-1.0.0/calcite/R/input-message.R |only calcite-1.0.0/calcite/R/input-number.R |only calcite-1.0.0/calcite/R/input-text.R |only calcite-1.0.0/calcite/R/label.R |only calcite-1.0.0/calcite/R/link.R |only calcite-1.0.0/calcite/R/notice.R |only calcite-1.0.0/calcite/R/option.R |only calcite-1.0.0/calcite/R/panel.R |only calcite-1.0.0/calcite/R/scrim.R |only calcite-1.0.0/calcite/R/segmented-control.R |only calcite-1.0.0/calcite/R/select.R |only calcite-1.0.0/calcite/R/shell-panel.R |only calcite-1.0.0/calcite/R/shell.R |only calcite-1.0.0/calcite/R/slider.R |only calcite-1.0.0/calcite/R/switch.R |only calcite-1.0.0/calcite/R/table.R |only calcite-1.0.0/calcite/R/tile-group.R |only calcite-1.0.0/calcite/R/tile.R |only calcite-1.0.0/calcite/R/utils.R | 113 calcite-1.0.0/calcite/inst/examples/calcite-accordion.R |only calcite-1.0.0/calcite/inst/examples/calcite-action-button.R |only calcite-1.0.0/calcite/inst/examples/calcite-alert.R |only calcite-1.0.0/calcite/inst/examples/calcite-block.R |only calcite-1.0.0/calcite/inst/examples/calcite-button.R |only calcite-1.0.0/calcite/inst/examples/calcite-checkbox.R |only calcite-1.0.0/calcite/inst/examples/calcite-date-picker.R |only calcite-1.0.0/calcite/inst/examples/calcite-input-file.R |only calcite-1.0.0/calcite/inst/examples/calcite-input-message.R |only calcite-1.0.0/calcite/inst/examples/calcite-input-number.R |only calcite-1.0.0/calcite/inst/examples/calcite-input-text.R |only calcite-1.0.0/calcite/inst/examples/calcite-label.R |only calcite-1.0.0/calcite/inst/examples/calcite-link.R |only calcite-1.0.0/calcite/inst/examples/calcite-notice.R |only calcite-1.0.0/calcite/inst/examples/calcite-panel.R |only calcite-1.0.0/calcite/inst/examples/calcite-scrim.R |only calcite-1.0.0/calcite/inst/examples/calcite-segmented-control.R |only calcite-1.0.0/calcite/inst/examples/calcite-select.R |only calcite-1.0.0/calcite/inst/examples/calcite-shell-panel.R |only calcite-1.0.0/calcite/inst/examples/calcite-slider.R |only calcite-1.0.0/calcite/inst/examples/calcite-switch.R |only calcite-1.0.0/calcite/inst/examples/calcite-table.R |only calcite-1.0.0/calcite/inst/examples/calcite-tile-group.R |only calcite-1.0.0/calcite/inst/examples/page-actionbar.R |only calcite-1.0.0/calcite/inst/examples/page-sidebar-penguins.R |only calcite-1.0.0/calcite/inst/www/calcite-accordion-item.js |only calcite-1.0.0/calcite/inst/www/calcite-accordion.js |only calcite-1.0.0/calcite/inst/www/calcite-action-bar.js |only calcite-1.0.0/calcite/inst/www/calcite-action.js |only calcite-1.0.0/calcite/inst/www/calcite-alert.js |only calcite-1.0.0/calcite/inst/www/calcite-bindings.js | 1336 +++++ calcite-1.0.0/calcite/inst/www/calcite-block.js |only calcite-1.0.0/calcite/inst/www/calcite-button.js |only calcite-1.0.0/calcite/inst/www/calcite-checkbox.js |only calcite-1.0.0/calcite/inst/www/calcite-date-picker.js |only calcite-1.0.0/calcite/inst/www/calcite-input-file.js |only calcite-1.0.0/calcite/inst/www/calcite-input-message.js |only calcite-1.0.0/calcite/inst/www/calcite-input-number.js |only calcite-1.0.0/calcite/inst/www/calcite-input-text.js |only calcite-1.0.0/calcite/inst/www/calcite-notice.js |only calcite-1.0.0/calcite/inst/www/calcite-option.js |only calcite-1.0.0/calcite/inst/www/calcite-panel.js |only calcite-1.0.0/calcite/inst/www/calcite-scrim.js |only calcite-1.0.0/calcite/inst/www/calcite-segmented-control.js |only calcite-1.0.0/calcite/inst/www/calcite-select.js |only calcite-1.0.0/calcite/inst/www/calcite-slider.js |only calcite-1.0.0/calcite/inst/www/calcite-switch.js |only calcite-1.0.0/calcite/inst/www/calcite-table.js |only calcite-1.0.0/calcite/inst/www/calcite-tile-group.js |only calcite-1.0.0/calcite/inst/www/calcite-tile.js |only calcite-1.0.0/calcite/man/calcite-package.Rd |only calcite-1.0.0/calcite/man/calcite_accordion.Rd | 102 calcite-1.0.0/calcite/man/calcite_accordion_item.Rd | 102 calcite-1.0.0/calcite/man/calcite_action.Rd | 157 calcite-1.0.0/calcite/man/calcite_action_bar.Rd | 92 calcite-1.0.0/calcite/man/calcite_action_group.Rd | 87 calcite-1.0.0/calcite/man/calcite_alert.Rd | 249 - calcite-1.0.0/calcite/man/calcite_block.Rd | 169 calcite-1.0.0/calcite/man/calcite_button.Rd | 199 calcite-1.0.0/calcite/man/calcite_checkbox.Rd | 98 calcite-1.0.0/calcite/man/calcite_date_picker.Rd | 138 calcite-1.0.0/calcite/man/calcite_input_file.Rd |only calcite-1.0.0/calcite/man/calcite_input_message.Rd | 83 calcite-1.0.0/calcite/man/calcite_input_number.Rd | 224 calcite-1.0.0/calcite/man/calcite_input_text.Rd | 197 calcite-1.0.0/calcite/man/calcite_label.Rd | 81 calcite-1.0.0/calcite/man/calcite_link.Rd | 111 calcite-1.0.0/calcite/man/calcite_list.Rd | 3 calcite-1.0.0/calcite/man/calcite_notice.Rd | 203 calcite-1.0.0/calcite/man/calcite_option.Rd | 64 calcite-1.0.0/calcite/man/calcite_panel.Rd | 216 calcite-1.0.0/calcite/man/calcite_scrim.Rd | 41 calcite-1.0.0/calcite/man/calcite_segmented_control.Rd | 160 calcite-1.0.0/calcite/man/calcite_segmented_control_item.Rd | 60 calcite-1.0.0/calcite/man/calcite_select.Rd | 159 calcite-1.0.0/calcite/man/calcite_shell.Rd | 101 calcite-1.0.0/calcite/man/calcite_shell_panel.Rd | 92 calcite-1.0.0/calcite/man/calcite_slider.Rd | 254 - calcite-1.0.0/calcite/man/calcite_switch.Rd | 136 calcite-1.0.0/calcite/man/calcite_tab_title.Rd | 3 calcite-1.0.0/calcite/man/calcite_table.Rd | 131 calcite-1.0.0/calcite/man/calcite_table_header.Rd | 39 calcite-1.0.0/calcite/man/calcite_tile.Rd | 137 calcite-1.0.0/calcite/man/calcite_tile_group.Rd | 123 calcite-1.0.0/calcite/man/examples.Rd |only calcite-1.0.0/calcite/man/page_actionbar.Rd |only calcite-1.0.0/calcite/man/page_navbar.Rd |only calcite-1.0.0/calcite/man/page_sidebar.Rd |only calcite-1.0.0/calcite/src |only 130 files changed, 4607 insertions(+), 3343 deletions(-)
Title: Predictive (Classification and Regression) Models Homologator
Description: Methods to unify the different ways of creating predictive models and their different predictive formats for classification and regression. It includes methods such as K-Nearest Neighbors Schliep, K. P. (2004) <doi:10.5282/ubm/epub.1769>, Decision Trees Leo Breiman, Jerome H. Friedman, Richard A. Olshen, Charles J. Stone (2017) <doi:10.1201/9781315139470>, ADA Boosting Esteban Alfaro, Matias Gamez, Noelia GarcÃa (2013) <doi:10.18637/jss.v054.i02>, Extreme Gradient Boosting Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>, Random Forest Breiman (2001) <doi:10.1023/A:1010933404324>, Neural Networks Venables, W. N., & Ripley, B. D. (2002) <ISBN:0-387-95457-0>, Support Vector Machines Bennett, K. P. & Campbell, C. (2000) <doi:10.1145/380995.380999>, Bayesian Methods Gelman, A., Carlin, J. B., Stern, H. S., & Rubin, D. B. (1995) <doi:10.1201/9780429258411>, Linear Discriminant Analysis Venables, W. N., & Ripley, B. [...truncated...]
Author: Oldemar Rodriguez R. [aut, cre],
Andres Navarro D. [aut],
Ariel Arroyo S. [aut],
Diego Jimenez A. [aut],
Jennifer Lobo V. [aut]
Maintainer: Oldemar Rodriguez R. <oldemar.rodriguez@ucr.ac.cr>
This is a re-admission after prior archival of version 2.2.11 dated 2026-01-27
Diff between traineR versions 2.2.11 dated 2026-01-27 and 2.2.12 dated 2026-03-03
DESCRIPTION | 11 +- MD5 | 8 - NAMESPACE | 1 R/variables.R | 220 +++++++++++++++++++++++++++++++------------------ man/importance.plot.Rd | 2 5 files changed, 152 insertions(+), 90 deletions(-)
Title: A Comprehensive Toolkit for Working with Encrypted Parquet Files
Description: Utilities for reading, writing, and managing RCDF files, including encryption and decryption support. It offers a flexible interface for handling data stored in encrypted Parquet format, along with metadata extraction, key management, and secure operations using AES and RSA encryptions.
Author: Bhas Abdulsamad [aut, cre, cph]
Maintainer: Bhas Abdulsamad <aeabdulsamad@gmail.com>
This is a re-admission after prior archival of version 0.1.3 dated 2026-02-12
Diff between rcdf versions 0.1.3 dated 2026-02-12 and 0.1.4 dated 2026-03-03
rcdf-0.1.3/rcdf/inst/extdata/mtcars-pw.rcdf |only rcdf-0.1.3/rcdf/man/get_data_dictionary.Rd |only rcdf-0.1.4/rcdf/DESCRIPTION | 10 rcdf-0.1.4/rcdf/MD5 | 98 +++-- rcdf-0.1.4/rcdf/NAMESPACE | 6 rcdf-0.1.4/rcdf/NEWS.md | 16 rcdf-0.1.4/rcdf/R/helpers.R | 66 --- rcdf-0.1.4/rcdf/R/merge_rcdf.R | 12 rcdf-0.1.4/rcdf/R/metadata.R | 66 +-- rcdf-0.1.4/rcdf/R/rcdf-package.R |only rcdf-0.1.4/rcdf/R/read_dot_env.R |only rcdf-0.1.4/rcdf/R/read_parquet.R | 107 ++++- rcdf-0.1.4/rcdf/R/read_rcdf.R | 314 ++--------------- rcdf-0.1.4/rcdf/R/read_rcdf_helpers.R |only rcdf-0.1.4/rcdf/R/utils.R | 142 +++++-- rcdf-0.1.4/rcdf/R/write_parquet.R | 32 - rcdf-0.1.4/rcdf/R/write_rcdf.R | 9 rcdf-0.1.4/rcdf/R/write_rcdf_as.R | 36 + rcdf-0.1.4/rcdf/build/vignette.rds |binary rcdf-0.1.4/rcdf/inst/doc/merging-rcdf.R |only rcdf-0.1.4/rcdf/inst/doc/merging-rcdf.Rmd |only rcdf-0.1.4/rcdf/inst/doc/merging-rcdf.html |only rcdf-0.1.4/rcdf/inst/extdata/mtcars-encrypted.parquet |binary rcdf-0.1.4/rcdf/inst/extdata/mtcars.parquet |binary rcdf-0.1.4/rcdf/inst/extdata/mtcars.rcdf |binary rcdf-0.1.4/rcdf/man/add_metadata.Rd | 14 rcdf-0.1.4/rcdf/man/collect.Rd |only rcdf-0.1.4/rcdf/man/figures/lifecycle-deprecated.svg |only rcdf-0.1.4/rcdf/man/figures/lifecycle-experimental.svg |only rcdf-0.1.4/rcdf/man/figures/lifecycle-stable.svg |only rcdf-0.1.4/rcdf/man/figures/lifecycle-superseded.svg |only rcdf-0.1.4/rcdf/man/generate_pw.Rd | 2 rcdf-0.1.4/rcdf/man/get_attr.Rd |only rcdf-0.1.4/rcdf/man/get_rcdf_metadata.Rd | 2 rcdf-0.1.4/rcdf/man/merge_rcdf.Rd | 12 rcdf-0.1.4/rcdf/man/rcdf-package.Rd |only rcdf-0.1.4/rcdf/man/read_dot_env.Rd |only rcdf-0.1.4/rcdf/man/read_env.Rd | 7 rcdf-0.1.4/rcdf/man/read_parquet.Rd | 27 - rcdf-0.1.4/rcdf/man/read_parquet_tbl.Rd |only rcdf-0.1.4/rcdf/man/read_rcdf.Rd | 29 - rcdf-0.1.4/rcdf/man/write_parquet.Rd | 10 rcdf-0.1.4/rcdf/man/write_rcdf.Rd | 2 rcdf-0.1.4/rcdf/man/write_rcdf_as.Rd | 6 rcdf-0.1.4/rcdf/man/write_rcdf_csv.Rd | 4 rcdf-0.1.4/rcdf/man/write_rcdf_dta.Rd | 4 rcdf-0.1.4/rcdf/man/write_rcdf_json.Rd | 4 rcdf-0.1.4/rcdf/man/write_rcdf_parquet.Rd | 4 rcdf-0.1.4/rcdf/man/write_rcdf_sav.Rd | 4 rcdf-0.1.4/rcdf/man/write_rcdf_sqlite.Rd | 6 rcdf-0.1.4/rcdf/man/write_rcdf_tsv.Rd | 4 rcdf-0.1.4/rcdf/man/write_rcdf_xlsx.Rd | 4 rcdf-0.1.4/rcdf/tests/testthat/test-read_env.R | 42 +- rcdf-0.1.4/rcdf/tests/testthat/test-read_parquet.R | 97 ++++- rcdf-0.1.4/rcdf/tests/testthat/test-utils.R | 13 rcdf-0.1.4/rcdf/tests/testthat/test-write_parquet.R | 33 + rcdf-0.1.4/rcdf/tests/testthat/test-write_rcdf.R | 9 rcdf-0.1.4/rcdf/tests/testthat/test-write_rcdf_as.R | 38 +- rcdf-0.1.4/rcdf/vignettes/merging-rcdf.Rmd |only 59 files changed, 628 insertions(+), 663 deletions(-)
Title: Calculate Phenotype Risk Scores
Description: Use phenotype risk scores based on linked clinical and genetic data
to study Mendelian disease and rare genetic variants. See Bastarache et al.
2018 <doi:10.1126/science.aal4043>.
Author: Jake Hughey [aut, cre],
Layla Aref [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>
This is a re-admission after prior archival of version 1.0.2 dated 2023-03-26
Diff between phers versions 1.0.2 dated 2023-03-26 and 1.0.5 dated 2026-03-03
phers-1.0.2/phers/tests/testthat/data/get_genetic_associations_additive_output.qs |only phers-1.0.2/phers/tests/testthat/data/get_residual_scores_output.qs |only phers-1.0.2/phers/tests/testthat/data/get_weights_cox_negative_output.qs |only phers-1.0.2/phers/tests/testthat/data/get_weights_cox_output.qs |only phers-1.0.2/phers/tests/testthat/data/get_weights_logistic_negative_output.qs |only phers-1.0.2/phers/tests/testthat/data/get_weights_logistic_output.qs |only phers-1.0.2/phers/tests/testthat/data/get_weights_loglinear_output.qs |only phers-1.0.2/phers/tests/testthat/data/get_weights_prevalence_negative_output.qs |only phers-1.0.2/phers/tests/testthat/data/get_weights_prevalence_output.qs |only phers-1.0.2/phers/tests/testthat/data/get_weights_prevalence_precalc_output.qs |only phers-1.0.2/phers/tests/testthat/data/run_linear_additive_output.qs |only phers-1.0.2/phers/tests/testthat/data/run_linear_dominant_output.qs |only phers-1.0.2/phers/tests/testthat/data/run_linear_genotypic_output.qs |only phers-1.0.2/phers/tests/testthat/data/run_linear_recessive_output.qs |only phers-1.0.5/phers/DESCRIPTION | 11 - phers-1.0.5/phers/MD5 | 60 +++++----- phers-1.0.5/phers/NEWS.md | 9 + phers-1.0.5/phers/R/examples.R | 5 phers-1.0.5/phers/R/map.R | 2 phers-1.0.5/phers/man/diseaseHpoMap.Rd | 2 phers-1.0.5/phers/man/getDxStatus.Rd | 2 phers-1.0.5/phers/man/getGeneticAssociations.Rd | 1 phers-1.0.5/phers/man/getPhecodeOccurrences.Rd | 1 phers-1.0.5/phers/man/getResidualScores.Rd | 1 phers-1.0.5/phers/man/getScores.Rd | 1 phers-1.0.5/phers/man/getWeights.Rd | 1 phers-1.0.5/phers/man/mapDiseaseToPhecode.Rd | 1 phers-1.0.5/phers/tests/testthat/data/get_genetic_associations_additive_output.rds |only phers-1.0.5/phers/tests/testthat/data/get_residual_scores_output.rds |only phers-1.0.5/phers/tests/testthat/data/get_weights_cox_negative_output.rds |only phers-1.0.5/phers/tests/testthat/data/get_weights_cox_output.rds |only phers-1.0.5/phers/tests/testthat/data/get_weights_logistic_negative_output.rds |only phers-1.0.5/phers/tests/testthat/data/get_weights_logistic_output.rds |only phers-1.0.5/phers/tests/testthat/data/get_weights_loglinear_output.rds |only phers-1.0.5/phers/tests/testthat/data/get_weights_prevalence_negative_output.rds |only phers-1.0.5/phers/tests/testthat/data/get_weights_prevalence_output.rds |only phers-1.0.5/phers/tests/testthat/data/get_weights_prevalence_precalc_output.rds |only phers-1.0.5/phers/tests/testthat/data/run_linear_additive_output.rds |only phers-1.0.5/phers/tests/testthat/data/run_linear_dominant_output.rds |only phers-1.0.5/phers/tests/testthat/data/run_linear_genotypic_output.rds |only phers-1.0.5/phers/tests/testthat/data/run_linear_recessive_output.rds |only phers-1.0.5/phers/tests/testthat/setup.R | 8 - phers-1.0.5/phers/tests/testthat/test_genetic_association.R | 10 - phers-1.0.5/phers/tests/testthat/test_phers.R | 2 phers-1.0.5/phers/tests/testthat/test_weights.R | 16 +- 45 files changed, 76 insertions(+), 57 deletions(-)
Title: GWR, Mixed GWR with Spatial Autocorrelation and Multiscale
GWR/GTWR (Top-Down Scale Approaches)
Description: Provides methods for Geographically Weighted Regression with spatial autocorrelation (Geniaux and Martinetti 2017) <doi:10.1016/j.regsciurbeco.2017.04.001>. Implements Multiscale Geographically Weighted Regression with Top-Down Scale approaches (Geniaux 2026) <doi:10.1007/s10109-025-00481-4>.
Author: Ghislain Geniaux [aut, cre],
Davide Martinetti [aut],
Cesar Martinez [aut]
Maintainer: Ghislain Geniaux <ghislain.geniaux@inrae.fr>
Diff between mgwrsar versions 1.3.1 dated 2026-01-21 and 1.3.2 dated 2026-03-03
DESCRIPTION | 12 MD5 | 169 - NAMESPACE | 1 NEWS.md | 18 R/BP_pred_MGWRSAR.R | 2 R/INST_C.R | 5 R/MGWR.R | 10 R/MGWRSAR.R | 29 R/PhWY_C.R | 5 R/Proj_C.R | 5 R/QRcpp2_C.R | 5 R/RcppExports.R |only R/Sl_C.R | 5 R/TDS_MGWR.R | 1070 +++-------- R/Tf.R | 47 R/aic_model.R | 12 R/aicc_f.R | 17 R/atds_gwr.R | 37 R/compute_Rk.R | 44 R/compute_ts.R | 24 R/find_TP.R | 3 R/format_and_diagno.R | 17 R/golden_search_2d_bandwidth.R | 2 R/golden_search_bandwidth.R | 27 R/gwr_beta.R | 28 R/gwr_beta_glmboost.R | 2 R/gwr_beta_pivotal_qrp_cpp.R | 14 R/gwr_beta_pivotal_qrp_full.R | 3 R/gwr_beta_univar_cpp.R | 19 R/indice_aggreg.R | 2 R/int_prems.R | 13 R/internal_criteria_full.R |only R/kernel_matW.R | 23 R/methods.R | 357 ++- R/mgwr_beta_pivotal_qrp_mixed_cpp.R | 18 R/mgwrsar_bootstrap_test.R | 42 R/mgwrsar_bootstrap_test_all.R | 3 R/multiscale_gwr.R | 22 R/normW.R | 12 R/plot_effect.R | 2 R/plot_mgwrsar.R | 58 R/predict_mgwrsar.R | 219 +- R/prep_d.R | 428 +--- R/prep_var.R | 13 R/prep_w.R | 12 R/reord_M_R.R | 6 R/rmse.R | 10 R/search_bandwidths.R | 68 R/simu_multiscale.R | 112 - R/summary_Matrix.R | 19 R/update_opt.R | 288 +- R/update_opt_known.R | 21 R/update_opt_st.R | 55 inst/doc/GWR-and-Mixed-GWR-with-spatial-autocorrelation.html | 4 inst/doc/GWR-with-Space-Time-Kernels.html | 2 inst/doc/Intro_french_data.html | 2 inst/doc/Multiscale-GWR-using-top-down-scale-approach.Rmd | 21 inst/doc/Multiscale-GWR-using-top-down-scale-approach.html | 12 inst/doc/Speeding_up_GWR_like_models.html | 2 man/MGWRSAR.Rd | 4 man/TDS_MGWR.Rd | 5 man/int_prems.Rd | 12 man/internal_functions.Rd | 7 man/kernel_matW.Rd | 12 man/mgwrsar-class.Rd | 6 man/mgwrsar_bootstrap_test.Rd | 2 man/normW.Rd | 11 man/plot_effect.Rd | 3 man/predict.mgwrsar.Rd | 2 man/simu_multiscale.Rd | 2 man/summary_Matrix.Rd | 14 src/RcppExports.cpp |only src/RcppExports_arma.cpp | 8 src/gwr_core.cpp | 424 ++-- src/init.c | 4 src/knn_stable_sort.cpp | 2 src/mgwrsar.cpp | 84 tests |only tools |only vignettes/Multiscale-GWR-using-top-down-scale-approach.Rmd | 21 80 files changed, 2104 insertions(+), 1997 deletions(-)
Title: Estimate and Simulate from Location Dependent Marked Point
Processes
Description: A suite of tools for estimating, assessing model fit, simulating from, and visualizing location dependent marked point processes characterized by regularity in the pattern.
You provide a reference marked point process, a set of raster images containing location specific covariates, and select the estimation algorithm and type of mark model.
'ldmppr' estimates the process and mark models and allows you to check the appropriateness of the model using a variety of diagnostic tools.
Once a satisfactory model fit is obtained, you can simulate from the model and visualize the results.
Documentation for the package 'ldmppr' is available in the form of a vignette.
Author: Lane Drew [aut, cre, cph] ,
Andee Kaplan [aut]
Maintainer: Lane Drew <lanetdrew@gmail.com>
Diff between ldmppr versions 1.1.2 dated 2026-03-01 and 1.1.3 dated 2026-03-03
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ inst/doc/ldmppr_howto.html | 14 +++++++------- src/self_correcting_model.cpp | 9 +++++++-- 5 files changed, 27 insertions(+), 16 deletions(-)
Title: Implementation of Fast Hierarchical Clustering
Description: A fast implementation of hierarchical clustering that incorporates original code from Fionn Murtagh.
Author: Fionn Murtagh [aut],
R development team [aut],
Peter Langfelder [com, cre]
Maintainer: Peter Langfelder <Peter.Langfelder@gmail.com>
Diff between flashClust versions 1.01-2 dated 2012-08-21 and 1.1-4 dated 2026-03-03
Changelog | 5 +++++ DESCRIPTION | 28 ++++++++++++++++++++-------- MD5 | 15 ++++++++------- NAMESPACE | 2 +- R/murtagh.R | 9 ++++----- inst/CITATION | 8 ++++---- man/flashClust.Rd | 6 +++--- src/hc.f | 4 +++- src/registerRoutines.c |only 9 files changed, 48 insertions(+), 29 deletions(-)
Title: Learning Principal Graphs with DDRTree
Description: Provides an implementation of the framework of reversed graph embedding (RGE) which projects data into a reduced dimensional space while constructs a principal tree which passes through the middle of the data simultaneously. DDRTree shows superiority to alternatives (Wishbone, DPT) for inferring the ordering as well as the intrinsic structure of the single cell genomics data. In general, it could be used to reconstruct the temporal progression as well as bifurcation structure of any datatype.
Author: Xiaojie Qiu [aut],
Cole Trapnell [aut],
Qi Mao [aut],
Li Wang [aut],
Brent Ewing [cre]
Maintainer: Brent Ewing <bge@uw.edu>
Diff between DDRTree versions 0.1.5 dated 2017-04-30 and 0.1.6 dated 2026-03-03
DDRTree-0.1.5/DDRTree/NEWS |only DDRTree-0.1.6/DDRTree/DESCRIPTION | 22 +++++++++++++++------- DDRTree-0.1.6/DDRTree/MD5 | 6 +++--- DDRTree-0.1.6/DDRTree/NEWS.md |only DDRTree-0.1.6/DDRTree/man/DDRTree.Rd | 2 +- 5 files changed, 19 insertions(+), 11 deletions(-)
Title: Analysis of R Code for Reproducible Research and Code
Comprehension
Description: Tools for analyzing R expressions
or blocks of code and determining the dependencies between them.
It focuses on R scripts, but can be used on the bodies of functions.
There are many facilities including the ability to summarize or get a high-level
view of code, determining dependencies between variables, code improvement
suggestions.
Author: Duncan Temple Lang [aut],
Roger Peng [aut],
Deborah Nolan [aut],
Gabriel Becker [aut, cre]
Maintainer: Gabriel Becker <gabembecker@gmail.com>
This is a re-admission after prior archival of version 0.6.6 dated 2024-04-07
Diff between CodeDepends versions 0.6.6 dated 2024-04-07 and 0.6.7 dated 2026-03-03
DESCRIPTION | 27 +++++++++-- MD5 | 46 +++++++++---------- NAMESPACE | 3 - R/callGraph.R | 104 +++++++++++++++++++++++-------------------- R/codeDepends.R | 5 +- R/frags.R | 4 - R/functionHandlers.R | 6 +- R/graph.R | 25 +++++----- R/highlightCode.R | 4 - R/sectionDepends.R | 2 R/sweave.R | 2 build/vignette.rds |binary inst/doc/intro.R | 10 ++-- inst/doc/intro.Rmd | 2 inst/doc/intro.html | 56 ++++++++++++++--------- inst/samples/results-multi.R | 2 inst/samples/sitepairs.R | 2 man/getDetailedTimelines.Rd | 4 + man/getVariables.Rd | 4 - man/highlightCode.Rd | 3 - man/makeTaskGraph.Rd | 2 man/sourceVariable.Rd | 4 + tests/draw.R | 32 +++++++------ vignettes/intro.Rmd | 2 24 files changed, 200 insertions(+), 151 deletions(-)
Title: Automatic Codebooks from Metadata Encoded in Dataset Attributes
Description: Easily automate the following tasks to describe data frames:
Summarise the distributions, and labelled missings of variables graphically
and using descriptive statistics.
For surveys, compute and summarise reliabilities (internal consistencies,
retest, multilevel) for psychological scales.
Combine this information with metadata (such as item labels and labelled
values) that is derived from R attributes.
To do so, the package relies on 'rmarkdown' partials, so you can generate
HTML, PDF, and Word documents.
Codebooks are also available as tables (CSV, Excel, etc.) and in JSON-LD, so
that search engines can find your data and index the metadata.
The metadata are also available at your fingertips via RStudio Addins.
Author: Ruben Arslan [aut, cre]
Maintainer: Ruben Arslan <ruben.arslan@gmail.com>
Diff between codebook versions 0.10.0 dated 2026-02-26 and 0.10.1 dated 2026-03-03
DESCRIPTION | 8 MD5 | 27 NEWS.md | 4 inst/doc/codebook.html | 8 inst/doc/codebook_qualtrics.html | 4 inst/doc/codebook_sav.R | 18 inst/doc/codebook_sav.Rmd | 19 inst/doc/codebook_sav.html | 35 inst/doc/codebook_tutorial.R | 31 inst/doc/codebook_tutorial.Rmd | 33 inst/doc/codebook_tutorial.html | 1545 ++++++++++++++++++------------------- inst/extdata/bfi_dict_tutorial.rds |only inst/extdata/bfi_tutorial.rds |only inst/extdata/darktriad.sav |only vignettes/codebook_sav.Rmd | 19 vignettes/codebook_tutorial.Rmd | 33 16 files changed, 863 insertions(+), 921 deletions(-)
Title: Cluster Ordinal Data via Proportional Odds or Ordered Stereotype
Description: Biclustering, row clustering and column clustering using the proportional odds model (POM), ordered stereotype model (OSM) or binary model for ordinal categorical data. Fernández, D., Arnold, R., Pledger, S., Liu, I., & Costilla, R. (2019) <doi:10.1007/s11634-018-0324-3>.
Author: Louise McMillan [aut, cre, cph] ,
Daniel Fernandez Martinez [aut] ,
Ying Cui [aut],
Eleni Matechou [aut] ,
W. N. Venables [ctb, cph] ,
B. D. Ripley [ctb, cph]
Maintainer: Louise McMillan <louise.mcmillan@vuw.ac.nz>
Diff between clustord versions 2.0.0 dated 2026-03-01 and 2.0.1 dated 2026-03-03
DESCRIPTION | 8 - MD5 | 26 ++-- R/osm.R | 8 - inst/doc/RegressionwithOSM.pdf |binary inst/doc/clustordAdvSettings.pdf |binary inst/doc/clustordConvergence.pdf |binary inst/doc/clustordOrdinalModels.pdf |binary inst/doc/clustordStructureSummary.pdf |binary inst/doc/clustordTutorial.pdf |binary inst/scripts/clustord_runs_for_reorder_tests.R |only tests/testthat/reorder_models_bi.Rdata |only tests/testthat/reorder_models_col.Rdata |only tests/testthat/reorder_models_row.Rdata |only tests/testthat/test_reorder_bi.R | 67 +--------- tests/testthat/test_reorder_col.R | 154 +++--------------------- tests/testthat/test_reorder_row.R | 156 +++---------------------- 16 files changed, 81 insertions(+), 338 deletions(-)
Title: A Package for Biometrics and Modelling
Description: A system of functions and datasets to carry out quantitative analyses in the biological
sciences. The package facilitates data management, exploratory analyses, and model assessment.
Although it currently focuses on forest ecology, silviculture and decision-making, most of
the package functions are applicable across several disciplines, including economics,
environmental science, and healthcare.
Author: Christian Salas-Eljatib [aut, cre] ,
Nicolas Campos [ctb] ,
Marcos Marivil [ctb]
Maintainer: Christian Salas-Eljatib <cseljatib@gmail.com>
Diff between biometrics versions 1.0.2 dated 2025-08-20 and 1.0.3 dated 2026-03-03
biometrics-1.0.2/biometrics/R/dg.r |only biometrics-1.0.2/biometrics/R/powerfx.r |only biometrics-1.0.2/biometrics/man/dg.Rd |only biometrics-1.0.2/biometrics/man/kozak.Rd |only biometrics-1.0.2/biometrics/man/kozaklast.Rd |only biometrics-1.0.2/biometrics/man/kozakln.Rd |only biometrics-1.0.2/biometrics/man/powerfx.Rd |only biometrics-1.0.3/biometrics/DESCRIPTION | 44 ++- biometrics-1.0.3/biometrics/MD5 | 237 ++++++++++++++----- biometrics-1.0.3/biometrics/NAMESPACE | 45 +++ biometrics-1.0.3/biometrics/R/assignspp.r |only biometrics-1.0.3/biometrics/R/asymregfx.r |only biometrics-1.0.3/biometrics/R/backup.r |only biometrics-1.0.3/biometrics/R/bankfit.r |only biometrics-1.0.3/biometrics/R/bankpred.r |only biometrics-1.0.3/biometrics/R/bertarich.r |only biometrics-1.0.3/biometrics/R/biging.r |only biometrics-1.0.3/biometrics/R/compcorrefx.r |only biometrics-1.0.3/biometrics/R/creaincrdata.r |only biometrics-1.0.3/biometrics/R/cubica.r |only biometrics-1.0.3/biometrics/R/curtis.r |only biometrics-1.0.3/biometrics/R/curtisori.r |only biometrics-1.0.3/biometrics/R/data-cwd.r |only biometrics-1.0.3/biometrics/R/data-cwd2.r |only biometrics-1.0.3/biometrics/R/data-densidadcanelo2.r |only biometrics-1.0.3/biometrics/R/data-eucaplot.r |only biometrics-1.0.3/biometrics/R/data-eucaplot2.r |only biometrics-1.0.3/biometrics/R/data-eucaplotr.r |only biometrics-1.0.3/biometrics/R/data-eucaplotr2.r |only biometrics-1.0.3/biometrics/R/data-radiatapl.r |only biometrics-1.0.3/biometrics/R/data-radiatapl2.r |only biometrics-1.0.3/biometrics/R/data-spplist.r |only biometrics-1.0.3/biometrics/R/data-standtabCoihue.r |only biometrics-1.0.3/biometrics/R/data-standtabCoihue2.r |only biometrics-1.0.3/biometrics/R/data-standtabRauli.r | 18 - 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Title: Behavioral Economic Easy Demand
Description: Facilitates many of the analyses performed in studies of
behavioral economic demand. The package supports commonly-used options for
modeling operant demand including (1) data screening proposed by Stein,
Koffarnus, Snider, Quisenberry, & Bickel (2015; <doi:10.1037/pha0000020>),
(2) fitting models of demand such as linear (Hursh, Raslear, Bauman,
& Black, 1989, <doi:10.1007/978-94-009-2470-3_22>), exponential (Hursh & Silberberg, 2008,
<doi:10.1037/0033-295X.115.1.186>) and modified exponential (Koffarnus,
Franck, Stein, & Bickel, 2015, <doi:10.1037/pha0000045>), and (3) calculating
numerous measures relevant to applied behavioral economists (Intensity,
Pmax, Omax). Also supports plotting and comparing data.
Author: Brent Kaplan [aut, cre, cph] ,
Shawn Gilroy [ctb]
Maintainer: Brent Kaplan <bkaplan.ku@gmail.com>
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beezdemand-0.2.0/beezdemand/vignettes/mixed-demand-advanced.Rmd |only beezdemand-0.2.0/beezdemand/vignettes/mixed-demand.Rmd |only beezdemand-0.2.0/beezdemand/vignettes/model-selection.Rmd |only 311 files changed, 5575 insertions(+), 4178 deletions(-)
Title: Generalized Random Forests
Description: Forest-based statistical estimation and inference.
GRF provides non-parametric methods for heterogeneous treatment effects estimation
(optionally using right-censored outcomes, multiple treatment arms or outcomes, or instrumental variables),
as well as least-squares regression, quantile regression, and survival regression,
all with support for missing covariates.
Author: Julie Tibshirani [aut],
Susan Athey [aut],
Rina Friedberg [ctb],
Vitor Hadad [ctb],
David Hirshberg [ctb],
Luke Miner [ctb],
Erik Sverdrup [aut, cre],
Stefan Wager [aut],
Marvin Wright [ctb]
Maintainer: Erik Sverdrup <erik.sverdrup@monash.edu>
Diff between grf versions 2.5.0 dated 2025-10-09 and 2.6.0 dated 2026-03-03
grf-2.5.0/grf/src/optional |only grf-2.6.0/grf/DESCRIPTION | 16 grf-2.6.0/grf/MD5 | 123 ++- grf-2.6.0/grf/R/RcppExports.R | 136 ++-- grf-2.6.0/grf/R/analysis_tools.R | 3 grf-2.6.0/grf/R/causal_forest.R | 6 grf-2.6.0/grf/R/causal_survival_forest.R | 12 grf-2.6.0/grf/R/data.R |only grf-2.6.0/grf/R/grf_options.R | 16 grf-2.6.0/grf/R/input_utilities.R | 9 grf-2.6.0/grf/R/instrumental_forest.R | 6 grf-2.6.0/grf/R/ll_regression_forest.R | 6 grf-2.6.0/grf/R/lm_forest.R | 6 grf-2.6.0/grf/R/multi_arm_causal_forest.R | 6 grf-2.6.0/grf/R/multi_regression_forest.R | 6 grf-2.6.0/grf/R/probability_forest.R | 6 grf-2.6.0/grf/R/quantile_forest.R | 6 grf-2.6.0/grf/R/regression_forest.R | 6 grf-2.6.0/grf/R/survival_forest.R | 6 grf-2.6.0/grf/R/tune_forest.R | 2 grf-2.6.0/grf/R/tune_ll_causal_forest.R | 3 grf-2.6.0/grf/R/tune_ll_regression_forest.R | 3 grf-2.6.0/grf/build |only grf-2.6.0/grf/data |only grf-2.6.0/grf/inst |only grf-2.6.0/grf/man/attentionrct.Rd |only grf-2.6.0/grf/man/grf_options.Rd | 15 grf-2.6.0/grf/man/schoolrct.Rd |only grf-2.6.0/grf/src/AnalysisToolsBindings.cpp | 24 grf-2.6.0/grf/src/CausalForestBindings.cpp | 22 grf-2.6.0/grf/src/CausalSurvivalForestBindings.cpp | 14 grf-2.6.0/grf/src/InstrumentalForestBindings.cpp | 14 grf-2.6.0/grf/src/MultiCausalForestBindings.cpp | 14 grf-2.6.0/grf/src/MultiRegressionForestBindings.cpp | 14 grf-2.6.0/grf/src/ProbabilityForestBindings.cpp | 14 grf-2.6.0/grf/src/QuantileForestBindings.cpp | 14 grf-2.6.0/grf/src/RcppExports.cpp | 308 +++++----- grf-2.6.0/grf/src/RcppUtilities.cpp | 5 grf-2.6.0/grf/src/RegressionForestBindings.cpp | 27 grf-2.6.0/grf/src/SurvivalForestBindings.cpp | 14 grf-2.6.0/grf/src/src/RuntimeContext.cpp |only grf-2.6.0/grf/src/src/RuntimeContext.h |only grf-2.6.0/grf/src/src/commons/Data.h | 16 grf-2.6.0/grf/src/src/commons/ProgressBar.cpp |only grf-2.6.0/grf/src/src/commons/ProgressBar.h |only grf-2.6.0/grf/src/src/forest/ForestTrainer.cpp | 50 + grf-2.6.0/grf/src/src/forest/ForestTrainer.h | 6 grf-2.6.0/grf/src/src/prediction/DefaultPredictionStrategy.h | 9 grf-2.6.0/grf/src/src/prediction/LLCausalPredictionStrategy.cpp | 24 grf-2.6.0/grf/src/src/prediction/LLCausalPredictionStrategy.h | 5 grf-2.6.0/grf/src/src/prediction/LocalLinearPredictionStrategy.cpp | 24 grf-2.6.0/grf/src/src/prediction/LocalLinearPredictionStrategy.h | 5 grf-2.6.0/grf/src/src/prediction/QuantilePredictionStrategy.cpp | 44 - grf-2.6.0/grf/src/src/prediction/QuantilePredictionStrategy.h | 9 grf-2.6.0/grf/src/src/prediction/SurvivalPredictionStrategy.cpp | 10 grf-2.6.0/grf/src/src/prediction/SurvivalPredictionStrategy.h | 9 grf-2.6.0/grf/src/src/prediction/collector/DefaultPredictionCollector.cpp | 55 + grf-2.6.0/grf/src/src/prediction/collector/DefaultPredictionCollector.h | 8 grf-2.6.0/grf/src/src/prediction/collector/OptimizedPredictionCollector.cpp | 47 + grf-2.6.0/grf/src/src/prediction/collector/OptimizedPredictionCollector.h | 6 grf-2.6.0/grf/src/src/prediction/collector/SampleWeightComputer.cpp | 35 - grf-2.6.0/grf/src/src/prediction/collector/SampleWeightComputer.h | 17 grf-2.6.0/grf/src/src/prediction/collector/TreeTraverser.cpp | 47 + grf-2.6.0/grf/src/src/prediction/collector/TreeTraverser.h | 7 grf-2.6.0/grf/src/tqdm |only grf-2.6.0/grf/vignettes |only 66 files changed, 860 insertions(+), 455 deletions(-)
Title: Antarctic Spatial Data Manipulation
Description: Loads and creates spatial data, including layers and tools that are relevant
to the activities of the Commission for the Conservation of Antarctic Marine Living
Resources. Provides two categories of functions: load functions and create functions.
Load functions are used to import existing spatial layers from the online CCAMLR GIS
such as the ASD boundaries. Create functions are used to create layers from user data
such as polygons and grids.
Author: Stephane Thanassekos [aut, cre],
Keith Reid [aut],
Lucy Robinson [aut],
Michael D. Sumner [ctb],
Roger Bivand [ctb]
Maintainer: Stephane Thanassekos <stephane.thanassekos@ccamlr.org>
Diff between CCAMLRGIS versions 4.2.1 dated 2025-02-16 and 4.3.1 dated 2026-03-03
DESCRIPTION | 12 - MD5 | 46 ++--- NEWS.md | 7 R/DensifyData.R | 216 +++++++++++++----------- R/add_Cscale.R | 2 R/add_col.R | 5 R/add_labels.R | 3 R/assign_areas.R | 10 - R/cGrid.R | 392 +++++++++++++++++++++----------------------- R/cLines.R | 4 R/cPolys.R | 4 R/create.R | 63 ++++--- R/create_CircularArrow.R | 51 ----- README.md | 125 ++++++-------- build/vignette.rds |binary inst/doc/CCAMLRGIS.html | 4 inst/extdata/SmallBathy.tif |binary man/add_Cscale.Rd | 2 man/add_col.Rd | 5 man/add_labels.Rd | 3 man/create_CircularArrow.Rd | 51 ----- man/create_Lines.Rd | 8 man/create_PolyGrids.Rd | 26 ++ man/create_Polys.Rd | 8 24 files changed, 500 insertions(+), 547 deletions(-)
Title: Higher-Level Interface of 'torch' Package to Auto-Train Neural
Networks
Description: Provides a higher-level interface to the 'torch' package for defining,
training, and fine-tuning neural networks, including its depth, powered by code generation.
This package supports few to several architectures, including feedforward (multi-layer perceptron)
and recurrent neural networks (Recurrent Neural Networks (RNN), Long Short-Term Memory (LSTM), Gated Recurrent Unit (GRU)),
while also reduces boilerplate 'torch' code while enabling seamless integration with 'torch'. The model methods
to train neural networks from this package also bridges to titanic ML frameworks in R, namely
'tidymodels' ecosystem, which enables the 'parsnip' model specifications, workflows, recipes,
and tuning tools.
Author: Joshua Marie [aut, cre],
Antoine Soetewey [aut]
Maintainer: Joshua Marie <joshua.marie.k@gmail.com>
Diff between kindling versions 0.2.0 dated 2026-02-04 and 0.3.0 dated 2026-03-03
kindling-0.2.0/kindling/R/act_fun.R |only kindling-0.2.0/kindling/R/print_nn_exec.R |only kindling-0.2.0/kindling/R/torch_nn_generator.R |only kindling-0.2.0/kindling/R/variable_imp.R |only kindling-0.3.0/kindling/DESCRIPTION | 23 kindling-0.3.0/kindling/MD5 | 136 ++- kindling-0.3.0/kindling/NAMESPACE | 40 kindling-0.3.0/kindling/NEWS.md | 60 + kindling-0.3.0/kindling/R/act-fun.R |only kindling-0.3.0/kindling/R/act-funnew.R |only kindling-0.3.0/kindling/R/early_stop.R |only kindling-0.3.0/kindling/R/gen-train-nn-parsnip.R |only kindling-0.3.0/kindling/R/generalized-nn-fit.R |only kindling-0.3.0/kindling/R/generalized-nn-fitds.R |only kindling-0.3.0/kindling/R/loss-nn-validator.R |only kindling-0.3.0/kindling/R/mlp.R | 6 kindling-0.3.0/kindling/R/mlp_kindling.R | 241 +++-- kindling-0.3.0/kindling/R/nn_arch.R |only kindling-0.3.0/kindling/R/parsnip-helpers.R | 16 kindling-0.3.0/kindling/R/print-gen-nn.R |only kindling-0.3.0/kindling/R/print-nn-exec.R |only kindling-0.3.0/kindling/R/register-parsnip.R | 405 ++++++---- kindling-0.3.0/kindling/R/rnn.R | 4 kindling-0.3.0/kindling/R/rnn_kindling.R | 182 ++-- kindling-0.3.0/kindling/R/torch-code-gen.R |only kindling-0.3.0/kindling/R/torch-nn-generator.R |only kindling-0.3.0/kindling/R/utils.R | 3 kindling-0.3.0/kindling/R/variable-imp.R |only kindling-0.3.0/kindling/README.md | 78 - kindling-0.3.0/kindling/build/vignette.rds |binary kindling-0.3.0/kindling/inst/doc/custom-act-fn.R |only kindling-0.3.0/kindling/inst/doc/custom-act-fn.Rmd |only kindling-0.3.0/kindling/inst/doc/custom-act-fn.html |only kindling-0.3.0/kindling/inst/doc/kindling.html | 7 kindling-0.3.0/kindling/inst/doc/special-cases.R |only kindling-0.3.0/kindling/inst/doc/special-cases.Rmd |only kindling-0.3.0/kindling/inst/doc/special-cases.html |only kindling-0.3.0/kindling/inst/doc/tuning-capabilities.R |only kindling-0.3.0/kindling/inst/doc/tuning-capabilities.Rmd |only kindling-0.3.0/kindling/inst/doc/tuning-capabilities.html |only kindling-0.3.0/kindling/inst/examples/custom_model.R |only kindling-0.3.0/kindling/inst/examples/gen_nn_module.R |only kindling-0.3.0/kindling/inst/examples/tuning2.R |only kindling-0.3.0/kindling/man/act_funs.Rd | 4 kindling-0.3.0/kindling/man/args.Rd | 7 kindling-0.3.0/kindling/man/dot-train_nn_tab_impl.Rd |only kindling-0.3.0/kindling/man/early_stop.Rd |only kindling-0.3.0/kindling/man/eval_act_funs.Rd |only kindling-0.3.0/kindling/man/extract_depth_param.Rd | 44 - kindling-0.3.0/kindling/man/ffnn_impl.Rd | 62 - kindling-0.3.0/kindling/man/figures/README-example-1.png |binary kindling-0.3.0/kindling/man/figures/lifecycle-deprecated.svg |only kindling-0.3.0/kindling/man/figures/lifecycle-experimental.svg |only kindling-0.3.0/kindling/man/figures/lifecycle-stable.svg |only kindling-0.3.0/kindling/man/figures/lifecycle-superseded.svg |only kindling-0.3.0/kindling/man/formula_to_expr_transformer.Rd |only kindling-0.3.0/kindling/man/formula_to_function.Rd |only kindling-0.3.0/kindling/man/gen-nn-predict.Rd |only kindling-0.3.0/kindling/man/gen-nn-train.Rd |only kindling-0.3.0/kindling/man/kindling-basemodels.Rd | 3 kindling-0.3.0/kindling/man/kindling-nn-wrappers.Rd | 28 kindling-0.3.0/kindling/man/kindling-varimp.Rd | 2 kindling-0.3.0/kindling/man/kindling.Rd | 5 kindling-0.3.0/kindling/man/layer-attributes.Rd |only kindling-0.3.0/kindling/man/layer_prs.Rd |only kindling-0.3.0/kindling/man/make_kindling.Rd | 4 kindling-0.3.0/kindling/man/mlp_kindling.Rd | 63 - kindling-0.3.0/kindling/man/new_act_fn.Rd |only kindling-0.3.0/kindling/man/nn_arch.Rd |only kindling-0.3.0/kindling/man/nn_gens.Rd | 5 kindling-0.3.0/kindling/man/nn_module_generator.Rd |only kindling-0.3.0/kindling/man/ordinal_gen.Rd | 2 kindling-0.3.0/kindling/man/predict-basemodel.Rd | 88 +- kindling-0.3.0/kindling/man/print-layer_pronoun.Rd |only kindling-0.3.0/kindling/man/print.ffnn_fit.Rd | 2 kindling-0.3.0/kindling/man/print.nn_arch.Rd |only kindling-0.3.0/kindling/man/print.nn_fit.Rd |only kindling-0.3.0/kindling/man/print.rnn_fit.Rd | 2 kindling-0.3.0/kindling/man/reexports.Rd | 2 kindling-0.3.0/kindling/man/rnn_impl.Rd | 68 - kindling-0.3.0/kindling/man/rnn_kindling.Rd | 38 kindling-0.3.0/kindling/man/safe_sample.Rd | 40 kindling-0.3.0/kindling/man/substitute_dot.Rd |only kindling-0.3.0/kindling/man/train_nn_impl.Rd |only kindling-0.3.0/kindling/man/train_nn_impl_dataset.Rd |only kindling-0.3.0/kindling/man/train_nnsnip.Rd |only kindling-0.3.0/kindling/tests/testthat/test-act_funs.R |only kindling-0.3.0/kindling/tests/testthat/test-basemodel.R | 10 kindling-0.3.0/kindling/tests/testthat/test-dataset-method.R |only kindling-0.3.0/kindling/tests/testthat/test-grid-nn-more.R |only kindling-0.3.0/kindling/tests/testthat/test-grid_depth-more.R |only kindling-0.3.0/kindling/tests/testthat/test-prints.R |only kindling-0.3.0/kindling/tests/testthat/test-torch-code-gen.R |only kindling-0.3.0/kindling/tests/testthat/test-train-nn-ds.R |only kindling-0.3.0/kindling/tests/testthat/test-train-nn.R |only kindling-0.3.0/kindling/tests/testthat/test-train_nnsnip.R |only kindling-0.3.0/kindling/tests/testthat/test-tune-workflows.R | 4 kindling-0.3.0/kindling/tests/testthat/test-variable-imp.R | 76 + kindling-0.3.0/kindling/vignettes/custom-act-fn.Rmd |only kindling-0.3.0/kindling/vignettes/special-cases.Rmd |only kindling-0.3.0/kindling/vignettes/tuning-capabilities.Rmd |only 101 files changed, 1108 insertions(+), 652 deletions(-)
Title: Hierarchical Runtime Configuration Management
Description: Provides tools for managing nested, multi-level configuration systems with
runtime mutability, type validation, and default value management. Supports creating
hierarchical options managers with customizable validators for scalar and vector types
(numeric, character, logical), enumerated values, bounded ranges, and complex structures
like XY pairs. Options can be dynamically modified at runtime while maintaining type
safety through validator functions, and easily reset to their default values when needed.
Author: Bangou Zheng [aut, cre]
Maintainer: Bangou Zheng <zheng.bangyou@gmail.com>
Diff between optree versions 0.1.0 dated 2026-02-16 and 0.1.1 dated 2026-03-02
DESCRIPTION | 6 +-- MD5 | 20 +++++------ R/validator.R | 29 ++++++++++++++++- README.md | 24 ++++++++++---- build/vignette.rds |binary inst/doc/validators.R | 11 ++++++ inst/doc/validators.Rmd | 24 +++++++++++++- inst/doc/validators.html | 36 +++++++++++++++++---- man/v_xypair.Rd | 6 ++- tests/testthat/test-validator.R | 68 ++++++++++++++++++++++++++++++++++++++++ vignettes/validators.Rmd | 24 +++++++++++++- 11 files changed, 218 insertions(+), 30 deletions(-)
Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <https://glottolog.org/> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <https://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://docs.ropensci.org/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching. In addition, package provides an ability to download data from typological databases such as WALS, AUTOTYP and some others and to create your own database website.
Author: George Moroz [aut, cre] ,
Kirill Koncha [ctb] ,
Mikhail Leonov [ctb],
Anna Smirnova [ctb],
Ekaterina Zalivina [ctb]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between lingtypology versions 1.1.24 dated 2025-09-28 and 1.1.25 dated 2026-03-02
DESCRIPTION | 6 ++-- MD5 | 32 ++++++++++++------------- NEWS | 3 ++ R/glottolog.R | 12 ++++----- R/zzz.r | 2 - data/glottolog.RData |binary inst/CITATION | 2 + inst/doc/lingtypology_creating_maps.html | 4 +-- inst/doc/lingtypology_db_API.html | 4 +-- inst/doc/lingtypology_dplyr.html | 6 ++-- inst/doc/lingtypology_glottolog_functions.Rmd | 2 - inst/doc/lingtypology_glottolog_functions.html | 6 ++-- inst/doc/lingtypology_intro.Rmd | 2 - inst/doc/lingtypology_intro.html | 11 ++++---- man/glottolog.Rd | 12 ++++----- vignettes/lingtypology_glottolog_functions.Rmd | 2 - vignettes/lingtypology_intro.Rmd | 2 - 17 files changed, 57 insertions(+), 51 deletions(-)
Title: Actuarial Functions and Heavy Tailed Distributions
Description: Functions and data sets for actuarial science:
modeling of loss distributions; risk theory and ruin theory;
simulation of compound models, discrete mixtures and compound
hierarchical models; credibility theory. Support for many additional
probability distributions to model insurance loss size and
frequency: 23 continuous heavy tailed distributions; the
Poisson-inverse Gaussian discrete distribution; zero-truncated and
zero-modified extensions of the standard discrete distributions.
Support for phase-type distributions commonly used to compute ruin
probabilities. Main reference: <doi:10.18637/jss.v025.i07>.
Implementation of the Feller-Pareto family of distributions:
<doi:10.18637/jss.v103.i06>.
Author: Vincent Goulet [cre, aut] ,
Sebastien Auclair [ctb],
Jeremy Deraspe [ctb],
Christophe Dutang [aut] ,
Walter Garcia-Fontes [ctb],
Nicholas Langevin [ctb],
Xavier Milhaud [ctb],
Tommy Ouellet [ctb],
Alexandre Parent [ctb],
Mathieu Pigeon [aut],
Louis-P [...truncated...]
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between actuar versions 3.3-6 dated 2025-07-08 and 3.3-7 dated 2026-03-02
DESCRIPTION | 10 - MD5 | 72 +++---- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 37 +++- inst/doc/actuar.pdf |binary inst/doc/coverage.pdf |binary inst/doc/credibility.pdf |binary inst/doc/distributions.Rnw | 235 +++++++++++++++++-------- inst/doc/distributions.pdf |binary inst/doc/modeling.pdf |binary inst/doc/risk.pdf |binary inst/doc/simulation.R | 33 +-- inst/doc/simulation.Rnw | 16 + inst/doc/simulation.pdf |binary man/InverseGaussian.Rd | 5 man/rcompound.Rd | 2 src/dpq.h | 30 ++- src/invgauss.c | 6 src/logarithmic.c | 32 --- src/poisinvgauss.c | 2 src/qDiscrete_search.h | 6 src/zmbinom.c | 62 ++---- src/zmgeom.c | 66 ++----- src/zmlogarithmic.c | 105 +++++------ src/zmnbinom.c | 83 +++------ src/zmpois.c | 71 ++----- src/ztbinom.c | 61 ++---- src/ztgeom.c | 63 ++---- src/ztnbinom.c | 80 +++----- src/ztpois.c | 65 ++----- tests/dpqr-tests.R | 392 ++++++++++++++++++++++++++++++++++++------- vignettes/Makefile | 2 vignettes/actuar.bib | 44 ++-- vignettes/distributions.Rnw | 235 +++++++++++++++++-------- vignettes/share/preamble.tex | 6 vignettes/simulation.Rnw | 16 + 37 files changed, 1073 insertions(+), 764 deletions(-)
Title: Manage 'OAuth' Credentials from 'Posit Connect'
Description: A toolkit for making use of credentials mediated by 'Posit
Connect'. It handles the details of communicating with the Connect API
correctly, 'OAuth' token caching, and refresh behaviour.
Author: Aaron Jacobs [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Aaron Jacobs <aaron.jacobs@posit.co>
Diff between connectcreds versions 0.1.0 dated 2025-01-31 and 0.2.0 dated 2026-03-02
DESCRIPTION | 6 ++-- MD5 | 21 ++++++++++------- NAMESPACE | 4 +++ NEWS.md | 12 +++++++++ R/mocking.R | 9 ++++++- R/service-accounts.R |only R/viewer-based-credentials.R | 19 +++++++++++++-- man/connect_service_account_token.Rd |only man/connect_workload_token.Rd |only man/with_mocked_connect_responses.Rd | 7 ++++- tests/testthat/_snaps/service-accounts.md |only tests/testthat/_snaps/viewer-based-credentials.md | 27 +++++++++++++++------- tests/testthat/test-service-accounts.R |only tests/testthat/test-viewer-based-credentials.R | 6 ++++ 14 files changed, 88 insertions(+), 23 deletions(-)
Title: Difference-in-Differences with Unpoolable Data
Description: A framework for estimating difference-in-differences with
unpoolable data, based on Karim, Webb, Austin, and Strumpf (2025)
<doi:10.48550/arXiv.2403.15910>. Supports common or staggered adoption, multiple
groups, and the inclusion of covariates. Also computes p-values for the
aggregate average treatment effect on the treated via the
randomization inference procedure described in MacKinnon and Webb (2020)
<doi:10.1016/j.jeconom.2020.04.024>.
Author: Eric Jamieson [aut, cre, cph]
Maintainer: Eric Jamieson <ericbrucejamieson@gmail.com>
Diff between undidR versions 3.0.1 dated 2026-02-16 and 3.0.2 dated 2026-03-02
DESCRIPTION | 6 +-- MD5 | 16 ++++----- NEWS.md | 5 ++ R/undid_stage_three.r | 21 ++++++++++-- R/utils.R | 6 +-- README.md | 28 ++++++++-------- inst/doc/undidR.html | 56 ++++++++++++++++---------------- man/undid_stage_three.Rd | 4 +- tests/testthat/test-undid_stage_three.r | 29 ++++++++++++++++ 9 files changed, 109 insertions(+), 62 deletions(-)
Title: Robust Multi-Model Subset Selection
Description: Efficient algorithms for generating ensembles of robust, sparse and diverse models via robust
multi-model subset selection (RMSS). The robust ensembles are generated by minimizing the sum of
the least trimmed square loss of the models in the ensembles under constraints for the size of
the models and the sharing of the predictors. Tuning parameters for the robustness, sparsity and
diversity of the robust ensemble are selected by cross-validation.
Author: Anthony Christidis [aut, cre],
Gabriela Cohen-Freue [aut]
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between RMSS versions 1.2.3 dated 2025-12-17 and 1.2.4 dated 2026-03-02
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NEWS | 5 ++++- R/RMSS.R | 6 +++--- R/cv.RMSS.R | 6 +++--- 5 files changed, 21 insertions(+), 17 deletions(-)
Title: Interface to the 'JWSACruncher' of 'JDemetra+'
Description: 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>) is the seasonal adjustment software officially recommended
to the members of the European Statistical System and the European System of Central Banks. Seasonal adjustment models performed
with 'JDemetra+' can be stored into workspaces. 'JWSACruncher' (<https://github.com/jdemetra/jwsacruncher/releases> for v2 and <https://github.com/jdemetra/jdplus-main/releases> for v3) is a console tool that
re-estimates all the multi-processing defined in a workspace and to export the result. 'rjwsacruncher' allows to launch easily the 'JWSACruncher'.
Author: Alain Quartier-la-Tente [aut, cre] ,
Institut national de la statistique et des etudes economiques [cph]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between rjwsacruncher versions 0.2.2 dated 2025-07-18 and 0.2.3 dated 2026-03-02
DESCRIPTION | 8 +- MD5 | 24 ++++--- NAMESPACE | 2 NEWS.md | 14 ++++ R/Cruncher.R | 10 ++- R/ckeck_config.R |only R/download_cruncher.R | 110 ++++++++++++++++++++++++++++++++++-- R/onLoad.R | 10 ++- R/param_file.R | 10 ++- inst/doc/run_jwsacruncher.html | 4 - man/check_cruncher_configuration.Rd |only man/create_param_file.Rd | 2 man/default_param_file.Rd | 2 man/download_cruncher.Rd | 23 +++++-- 14 files changed, 183 insertions(+), 36 deletions(-)
Title: Export Domain Logic from Shiny using Meta-Programming
Description: Provides tools for capturing logic in a Shiny app and
exposing it as code that can be run outside of Shiny (e.g., from an R
console). It also provides tools for bundling both the code and
results to the end user.
Author: Joe Cheng [aut],
Carson Sievert [cre, aut] ,
RStudio [cph]
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between shinymeta versions 0.2.1 dated 2025-04-11 and 0.2.2 dated 2026-03-02
DESCRIPTION | 37 +++++++----- LICENSE |only MD5 | 19 +++--- NEWS.md | 16 +++-- R/utils.R | 29 ++++++++-- README.md | 4 - tests/testthat/_snaps/format.md | 16 ++--- tests/testthat/_snaps/metareactive.md | 4 - tests/testthat/_snaps/render.md | 2 tests/testthat/test-report.R | 2 tests/testthat/test-utils.R | 98 ++++++++++++++++++++++++++++++++++ 11 files changed, 178 insertions(+), 49 deletions(-)
Title: Database Interface and 'MySQL' Driver for R
Description: Legacy 'DBI' interface to 'MySQL' / 'MariaDB' based on old code
ported from S-PLUS. A modern 'MySQL' client written in 'C++' is available
from the 'RMariaDB' package.
Author: Jeroen Ooms [aut, cre] ,
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between RMySQL versions 0.11.1 dated 2025-04-01 and 0.11.2 dated 2026-03-02
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ configure | 4 ---- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Evaluates R expressions asynchronously and in parallel,
locally or distributed across networks. An official parallel cluster
type for R. Built on 'nanonext' and 'NNG', its non-polling,
event-driven architecture scales from a laptop to thousands of
processes across high-performance computing clusters and cloud
platforms. Features FIFO scheduling with task cancellation, promises
for reactive programming, 'OpenTelemetry' distributed tracing, and
custom serialization for cross-language data types.
Author: Charlie Gao [aut, cre] ,
Joe Cheng [ctb],
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between mirai versions 2.6.0 dated 2026-02-13 and 2.6.1 dated 2026-03-02
DESCRIPTION | 8 +- MD5 | 22 +++--- NAMESPACE | 2 NEWS.md | 8 ++ R/daemons.R | 114 +++++++++++++------------------- R/launchers.R | 156 ++++++++++++++++++++++++++------------------- R/mirai-package.R | 10 +- inst/doc/v02-promises.Rmd | 34 ++++----- inst/doc/v02-promises.html | 34 ++++----- man/daemons.Rd | 4 - tests/tests.R | 70 ++++++++++++++++---- vignettes/v02-promises.Rmd | 34 ++++----- 12 files changed, 279 insertions(+), 217 deletions(-)
Title: Rule- And Instance-Based Regression Modeling
Description: Regression modeling using rules with added instance-based
corrections.
Author: Max Kuhn [aut, cre],
Steve Weston [ctb],
Chris Keefer [ctb],
Nathan Coulter [ctb],
Ross Quinlan [aut] ,
Rulequest Research Pty Ltd. [cph]
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between Cubist versions 0.5.1 dated 2025-10-25 and 0.6.0 dated 2026-03-02
DESCRIPTION | 10 MD5 | 82 ++- NEWS.md | 10 R/QuinlanAttributes.R | 34 - R/cubist.R | 303 +++++++++----- R/exportCubistFiles.R | 39 - R/formatAttributes.R | 4 R/lattice.R | 126 +++-- R/makeDataFile.R | 27 - R/makeNamesFile.R | 47 -- R/parseCubistModel.R | 648 ++++++++++++++---------------- R/predict.cubist.R | 61 +- R/varUsage.R | 28 - build/vignette.rds |binary inst/doc/cubist.html | 23 - man/cubist.default.Rd | 16 man/cubistControl.Rd | 8 man/dotplot.cubist.Rd | 8 src/contin.c | 2 src/defns.h | 2 src/formrules.c | 25 - src/getnames.c | 2 src/instance.c | 17 src/modelfiles.c | 2 src/rules.c | 4 src/sample.c | 15 src/strbuf.c | 2 src/trees.c | 2 tests/testthat/_snaps/basic-execution.md | 39 + tests/testthat/_snaps/committees.md |only tests/testthat/_snaps/cubist.md |only tests/testthat/_snaps/edge-cases.md |only tests/testthat/_snaps/lattice.md |only tests/testthat/_snaps/parseCubistModel.md |only tests/testthat/_snaps/predict.cubist.md |only tests/testthat/_snaps/varUsage.md |only tests/testthat/helper-data.R |only tests/testthat/test-QuinlanAttributes.R |only tests/testthat/test-basic-execution.R | 54 ++ tests/testthat/test-committees.R |only tests/testthat/test-cubist.R |only tests/testthat/test-edge-cases.R |only tests/testthat/test-exportCubistFiles.R |only tests/testthat/test-lattice.R |only tests/testthat/test-parseCubistModel.R |only tests/testthat/test-predict.cubist.R |only tests/testthat/test-summary.R |only tests/testthat/test-varUsage.R |only tests/testthat/test_data |only tests/testthat/test_model.data |only tests/testthat/test_model.model |only tests/testthat/test_model.names |only 52 files changed, 961 insertions(+), 679 deletions(-)
Title: High Dimensional Locally-Linear Mapping
Description: Provides a tool for non linear mapping (non linear regression) using a mixture of regression model and an inverse regression strategy. The methods include the GLLiM model (see Deleforge et al (2015) <DOI:10.1007/s11222-014-9461-5>) based on Gaussian mixtures and a robust version of GLLiM, named SLLiM (see Perthame et al (2016) <DOI:10.1016/j.jmva.2017.09.009>) based on a mixture of Generalized Student distributions. The methods also include BLLiM (see Blein--Nicolas et al (2024) <DOI:10.1093/jrsssc/qlae012>) which is an extension of GLLiM with a sparse block diagonal structure for large covariance matrices (particularly interesting for transcriptomic data).
Author: Emeline Perthame [aut, cre] ,
Florence Forbes [aut] ,
Antoine Deleforge [aut] ,
Emilie Devijver [aut] ,
Melina Gallopin [aut]
Maintainer: Emeline Perthame <emeline.perthame@pasteur.fr>
Diff between xLLiM versions 2.3 dated 2023-10-27 and 2.3.1 dated 2026-03-02
DESCRIPTION | 36 ++++++++++++++++++++++++++++++------ MD5 | 7 ++++--- build |only man/bllim.Rd | 4 ++-- man/xLLiM-package.Rd | 8 ++++---- 5 files changed, 40 insertions(+), 15 deletions(-)
Title: High-Performance Matrix Market File Operations
Description: An interface to the 'fast_matrix_market' 'C++' library, this package offers efficient read and write operations for Matrix Market files in R. It supports both sparse and dense matrix formats. Peer-reviewed at 'rOpenSci' (<https://github.com/ropensci/software-review/issues/606>).
Author: Rohit Goswami [aut, cre] ,
Ildiko Czeller [rev] ,
Adam Lugowski [ctb]
Maintainer: Rohit Goswami <rgoswami@ieee.org>
Diff between fastMatMR versions 1.2.7 dated 2026-03-02 and 1.2.8 dated 2026-03-02
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 7 +++++++ inst/doc/fastMatMR.R | 20 ++++++++++---------- src/fast_matrix_market/PATCHES |only src/fast_matrix_market/read_body_threads.hpp | 2 +- 6 files changed, 26 insertions(+), 18 deletions(-)
Title: Soil Physical Analysis
Description: Basic and model-based soil physical analyses.
Author: Anderson Rodrigo da Silva [aut, cre] ,
Renato Paiva de Lima [aut]
Maintainer: Anderson Rodrigo da Silva <anderson.agro@hotmail.com>
Diff between soilphysics versions 5.0 dated 2022-06-07 and 5.1 dated 2026-03-02
DESCRIPTION | 15 - MD5 | 16 - NEWS | 23 +- build/vignette.rds |binary inst/CITATION | 76 +++----- inst/doc/vignette.R | 10 - inst/doc/vignette.html | 398 ++++++++++++++++++++++++++++++++++----------- man/llwrPTF.Rd | 40 ++-- man/soilphysics-package.Rd | 38 ++-- 9 files changed, 416 insertions(+), 200 deletions(-)
Title: Artificial Intelligence for Education
Description: In social and educational settings, the use of Artificial
Intelligence (AI) is a challenging task. Relevant data is often only
available in handwritten forms, or the use of data is restricted by
privacy policies. This often leads to small data sets. Furthermore, in
the educational and social sciences, data is often unbalanced in terms
of frequencies. To support educators as well as educational and social
researchers in using the potentials of AI for their work, this package
provides a unified interface for neural nets in 'PyTorch' to deal with
natural language problems. In addition, the package ships with a shiny
app, providing a graphical user interface. This allows the usage of
AI for people without skills in writing python/R scripts. The tools
integrate existing mathematical and statistical methods for dealing
with small data sets via pseudo-labeling (e.g. Cascante-Bonilla et al.
(2020) <doi:10.48550/arXiv.2001.06001>) and imbalanced data via the
creation of synthetic cases [...truncated...]
Author: Berding Florian [aut, cre] ,
Tykhonova Yuliia [aut] ,
Pargmann Julia [ctb] ,
Leube Anna [ctb] ,
Riebenbauer Elisabeth [ctb] ,
Rebmann Karin [ctb],
Slopinski Andreas [ctb]
Maintainer: Berding Florian <florian.berding@uni-hamburg.de>
Diff between aifeducation versions 1.1.3 dated 2025-11-19 and 1.1.4 dated 2026-03-02
DESCRIPTION | 6 MD5 | 175 +++---- NAMESPACE | 3 NEWS.md | 30 + R/Studio_ExtendedTasks.R | 13 R/Studio_ProgressModal.R | 10 R/def_ParameterDefinitions.R | 53 +- R/install_and_config.R | 61 +- R/obj_BaseModelCore.R | 75 ++- R/obj_ClassifiersBasedOnTextEmbeddings.R | 48 +- R/obj_DataManager.R | 38 - R/obj_FeatureExtractor.R | 24 - R/obj_LargeDataSetBase.R | 30 + R/obj_ModelsBasedOnTextEmbeddings.R | 12 R/obj_TEClassifierProtoNet.R | 2 R/obj_TEClassifiersBasedOnProtoNet.R | 12 R/obj_TEClassifiersBasedOnRegular.R | 4 R/obj_TextEmbeddingModel.R | 4 R/onLoad.R | 4 R/utils_Studio.R | 5 R/utils_general.R | 8 R/utils_log.R | 20 R/utils_plot.R | 8 R/utils_python_data_management.R | 115 ++++ R/utils_transformer_creation.R | 2 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/aifeducation.html | 14 inst/python/FillMaskForMPLM.py | 24 - inst/python/pytorch_autoencoder.py | 48 +- inst/python/pytorch_classifier_models.py | 56 +- inst/python/pytorch_cls_training_loops.py | 78 +-- inst/python/pytorch_layers.py | 171 ++----- inst/python/pytorch_layers_normalization.py | 331 +++++++++++++- inst/python/pytorch_old_scripts.py | 43 - inst/python/pytorch_optimizer_scheduler.py |only inst/python/pytorch_predict_batch.py | 1 inst/python/pytorch_stack_layers.py | 67 -- man/BaseModelCore.Rd | 6 man/BaseModelMPNet.Rd | 4 man/LargeDataSetBase.Rd | 29 + man/LargeDataSetForText.Rd | 1 man/LargeDataSetForTextEmbeddings.Rd | 1 man/TEClassifierParallel.Rd | 12 man/TEClassifierParallelPrototype.Rd | 12 man/TEClassifierSequential.Rd | 10 man/TEClassifierSequentialPrototype.Rd | 10 man/TEClassifiersBasedOnProtoNet.Rd | 12 man/TEClassifiersBasedOnRegular.Rd | 12 man/TEFeatureExtractor.Rd | 24 - man/TextEmbeddingModel.Rd | 2 man/WordPieceTokenizer.Rd | 2 man/class_vector_to_py_dataset.Rd | 2 man/create_py_dataset_cache_file_path.Rd |only man/data.frame_to_py_dataset.Rd | 2 man/doc_formula.Rd | 68 +- man/extract_column_from_py_dataset.Rd |only man/get_batches_index.Rd | 2 man/inspect_tmp_dir.Rd | 34 - man/install_aifeducation.Rd | 2 man/install_py_modules.Rd | 16 man/prepare_r_array_for_dataset.Rd | 2 man/prepare_session.Rd | 11 man/py_dataset_to_embeddings.Rd | 2 man/reduce_to_unique.Rd | 2 man/tensor_list_to_numpy.Rd | 2 man/tensor_to_numpy.Rd | 2 man/update_aifeducation.Rd | 2 tests/testthat/test-00_02_setup_Classifiers.R | 1 tests/testthat/test-01_01_install_and_config.R | 6 tests/testthat/test-01_04_R_and_Python_utils.R | 6 tests/testthat/test-01_05_KNNOR.R | 2 tests/testthat/test-01_06_logging.R | 2 tests/testthat/test-01_07_DataCollator.R | 1 tests/testthat/test-02_01_pytorch_loss_fcts.R | 1 tests/testthat/test-02_02_pytorch_layers.R | 304 ++++++++---- tests/testthat/test-02_03_pytorch_stack_layers.R | 67 -- tests/testthat/test-02_05_tokenizer.R | 1 tests/testthat/test-02_06_BaseModels.R | 1 tests/testthat/test-03_01_LargeDataSetForTexts.R | 127 ++--- tests/testthat/test-03_02_LargeDataSetForTextEmbeddings.R | 22 tests/testthat/test-03_03_EmbeddedText.R | 1 tests/testthat/test-03_04_DataManager.R | 19 tests/testthat/test-03_05_FeatureExtractor.R | 15 tests/testthat/test-03_06_TextEmbeddingModels.R | 1 tests/testthat/test-03_08_TEClassifiers_core.R | 30 - tests/testthat/test-03_09_TEClassifiersProtoNet_old.R | 1 tests/testthat/test-03_09_TEClassifiersPrototype.R | 1 tests/testthat/test-04_01_LoadOldModels.R | 5 90 files changed, 1624 insertions(+), 873 deletions(-)
Title: Modular Monte Carlo Risk Analysis
Description: Framework for building modular Monte Carlo risk analysis models. It extends the capabilities of 'mc2d' to facilitate working with multiple risk pathways, variates and scenarios. It provides tools to organize risk analysis in independent flexible modules, perform multivariate Monte Carlo node operations, automate the creation of Monte Carlo nodes and visualise risk analysis models. For more details see Ciria (2025) <https://nataliaciria.com/mcmodule/>.
Author: Natalia Ciria [aut, cre, cph] ,
Alberto Allepuz [ths] ,
Giovanna Ciaravino [ths]
Maintainer: Natalia Ciria <nataliaciria@hotmail.com>
Diff between mcmodule versions 1.1.1 dated 2025-11-25 and 1.2.0 dated 2026-03-02
mcmodule-1.1.1/mcmodule/man/mc_summary_keys.Rd |only mcmodule-1.1.1/mcmodule/man/node_list_summary.Rd |only mcmodule-1.2.0/mcmodule/DESCRIPTION | 14 mcmodule-1.2.0/mcmodule/MD5 | 165 - mcmodule-1.2.0/mcmodule/NAMESPACE | 9 mcmodule-1.2.0/mcmodule/NEWS.md | 171 + mcmodule-1.2.0/mcmodule/R/add_prefix.R | 114 - mcmodule-1.2.0/mcmodule/R/animal_imports.R | 2 mcmodule-1.2.0/mcmodule/R/combine_modules.R | 29 mcmodule-1.2.0/mcmodule/R/create_mcnodes.R | 222 +- mcmodule-1.2.0/mcmodule/R/dim_match.R | 102 mcmodule-1.2.0/mcmodule/R/eval_module.R | 325 ++- mcmodule-1.2.0/mcmodule/R/get_node_list.R | 213 + mcmodule-1.2.0/mcmodule/R/imports_data.R | 48 mcmodule-1.2.0/mcmodule/R/imports_exp.R | 2 mcmodule-1.2.0/mcmodule/R/imports_mcmodule.R | 16 mcmodule-1.2.0/mcmodule/R/imports_mctable.R | 37 mcmodule-1.2.0/mcmodule/R/mc_analysis.R |only mcmodule-1.2.0/mcmodule/R/mc_filter.R |only mcmodule-1.2.0/mcmodule/R/mc_network.R | 386 ++- mcmodule-1.2.0/mcmodule/R/mc_plot.R |only mcmodule-1.2.0/mcmodule/R/mc_summary.R | 140 - mcmodule-1.2.0/mcmodule/R/mcmodule_info.R |only mcmodule-1.2.0/mcmodule/R/mcnode_na_rm.R | 2 mcmodule-1.2.0/mcmodule/R/prevalence_region.R | 36 mcmodule-1.2.0/mcmodule/R/set_data_keys.R | 49 mcmodule-1.2.0/mcmodule/R/set_mctable.R | 106 mcmodule-1.2.0/mcmodule/R/test_sensitivity.R | 4 mcmodule-1.2.0/mcmodule/R/totals.R | 154 - mcmodule-1.2.0/mcmodule/R/utils.R | 23 mcmodule-1.2.0/mcmodule/R/which_mcnode.R |only mcmodule-1.2.0/mcmodule/README.md | 14 mcmodule-1.2.0/mcmodule/data/imports_mcmodule.rda |binary mcmodule-1.2.0/mcmodule/data/imports_mctable.rda |binary mcmodule-1.2.0/mcmodule/inst/CITATION | 2 mcmodule-1.2.0/mcmodule/inst/doc/mcmodule.R | 94 mcmodule-1.2.0/mcmodule/inst/doc/mcmodule.Rmd | 164 + mcmodule-1.2.0/mcmodule/inst/doc/mcmodule.html | 1077 +++++----- mcmodule-1.2.0/mcmodule/inst/doc/multivariate_operations.html | 22 mcmodule-1.2.0/mcmodule/man/add_group_id.Rd | 15 mcmodule-1.2.0/mcmodule/man/add_prefix.Rd | 16 mcmodule-1.2.0/mcmodule/man/agg_totals.Rd | 35 mcmodule-1.2.0/mcmodule/man/animal_imports.Rd | 2 mcmodule-1.2.0/mcmodule/man/at_least_one.Rd | 24 mcmodule-1.2.0/mcmodule/man/check_mctable.Rd | 17 mcmodule-1.2.0/mcmodule/man/combine_modules.Rd | 11 mcmodule-1.2.0/mcmodule/man/create_mcnodes.Rd | 27 mcmodule-1.2.0/mcmodule/man/eval_module.Rd | 98 mcmodule-1.2.0/mcmodule/man/get_edge_table.Rd | 15 mcmodule-1.2.0/mcmodule/man/get_node_table.Rd | 15 mcmodule-1.2.0/mcmodule/man/imports_data.Rd | 2 mcmodule-1.2.0/mcmodule/man/imports_exp.Rd | 2 mcmodule-1.2.0/mcmodule/man/imports_mcmodule.Rd | 16 mcmodule-1.2.0/mcmodule/man/imports_mctable.Rd | 5 mcmodule-1.2.0/mcmodule/man/keys_match.Rd | 6 mcmodule-1.2.0/mcmodule/man/mc_filter.Rd |only mcmodule-1.2.0/mcmodule/man/mc_keys.Rd | 13 mcmodule-1.2.0/mcmodule/man/mc_match.Rd | 25 mcmodule-1.2.0/mcmodule/man/mc_match_data.Rd | 26 mcmodule-1.2.0/mcmodule/man/mc_network.Rd | 33 mcmodule-1.2.0/mcmodule/man/mc_plot.Rd |only mcmodule-1.2.0/mcmodule/man/mc_summary.Rd | 40 mcmodule-1.2.0/mcmodule/man/mcmodule_converg.Rd |only mcmodule-1.2.0/mcmodule/man/mcmodule_corr.Rd |only mcmodule-1.2.0/mcmodule/man/mcmodule_dim_check.Rd |only mcmodule-1.2.0/mcmodule/man/mcmodule_info.Rd |only mcmodule-1.2.0/mcmodule/man/mcmodule_to_matrices.Rd |only mcmodule-1.2.0/mcmodule/man/mcmodule_to_mc.Rd |only mcmodule-1.2.0/mcmodule/man/mcnode_na_rm.Rd | 3 mcmodule-1.2.0/mcmodule/man/prevalence_region.Rd | 4 mcmodule-1.2.0/mcmodule/man/reset_data_keys.Rd | 7 mcmodule-1.2.0/mcmodule/man/reset_mctable.Rd | 6 mcmodule-1.2.0/mcmodule/man/set_data_keys.Rd | 18 mcmodule-1.2.0/mcmodule/man/set_mctable.Rd | 30 mcmodule-1.2.0/mcmodule/man/test_sensitivity.Rd | 4 mcmodule-1.2.0/mcmodule/man/tidy_mcnode.Rd |only mcmodule-1.2.0/mcmodule/man/trial_totals.Rd | 47 mcmodule-1.2.0/mcmodule/man/visNetwork_edges.Rd | 11 mcmodule-1.2.0/mcmodule/man/visNetwork_nodes.Rd | 28 mcmodule-1.2.0/mcmodule/man/which_mcnode.Rd |only mcmodule-1.2.0/mcmodule/man/which_mcnode_inf.Rd |only mcmodule-1.2.0/mcmodule/man/which_mcnode_na.Rd |only mcmodule-1.2.0/mcmodule/man/wif_match.Rd | 19 mcmodule-1.2.0/mcmodule/tests/testthat/test-add_prefix.R | 178 + mcmodule-1.2.0/mcmodule/tests/testthat/test-combine_modules.R | 169 + mcmodule-1.2.0/mcmodule/tests/testthat/test-create_mcnodes.R | 38 mcmodule-1.2.0/mcmodule/tests/testthat/test-eval_module.R | 194 + mcmodule-1.2.0/mcmodule/tests/testthat/test-get_node_list.R | 94 mcmodule-1.2.0/mcmodule/tests/testthat/test-mc_analysis.R |only mcmodule-1.2.0/mcmodule/tests/testthat/test-mc_filter.R |only mcmodule-1.2.0/mcmodule/tests/testthat/test-mc_network.R | 160 + mcmodule-1.2.0/mcmodule/tests/testthat/test-mc_plot.R |only mcmodule-1.2.0/mcmodule/tests/testthat/test-set_mctable.R | 59 mcmodule-1.2.0/mcmodule/tests/testthat/test-which_mcnode.R |only mcmodule-1.2.0/mcmodule/vignettes/mcmodule.Rmd | 164 + 95 files changed, 3794 insertions(+), 1624 deletions(-)
Title: Additional Predictor with Maximum Effect Size
Description: Methods of selecting one from many numeric predictors for a regression model, to ensure that the additional predictor has the maximum effect size.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between maxEff versions 0.2.2 dated 2026-02-01 and 0.2.3 dated 2026-03-02
maxEff-0.2.2/maxEff/build |only maxEff-0.2.2/maxEff/inst |only maxEff-0.2.2/maxEff/vignettes |only maxEff-0.2.3/maxEff/DESCRIPTION | 16 +++--- maxEff-0.2.3/maxEff/MD5 | 58 +++++++++++-------------- maxEff-0.2.3/maxEff/NAMESPACE | 6 -- maxEff-0.2.3/maxEff/R/0PACKAGE.R | 7 --- maxEff-0.2.3/maxEff/R/add_S3.R | 4 - maxEff-0.2.3/maxEff/R/add_dummy.R | 16 +++--- maxEff-0.2.3/maxEff/R/add_dummy_partition.R | 8 +-- maxEff-0.2.3/maxEff/R/add_numeric.R | 11 +--- maxEff-0.2.3/maxEff/R/node1.R | 19 ++++++-- maxEff-0.2.3/maxEff/R/prepare_add.R | 1 maxEff-0.2.3/maxEff/R/statusPartition.R | 7 ++- maxEff-0.2.3/maxEff/man/add_dummy.Rd | 2 maxEff-0.2.3/maxEff/man/add_dummy_partition.Rd | 2 maxEff-0.2.3/maxEff/man/add_numeric.Rd | 4 - maxEff-0.2.3/maxEff/man/get_cutoff.Rd | 2 maxEff-0.2.3/maxEff/man/labels.add_dummy.Rd | 2 maxEff-0.2.3/maxEff/man/labels.add_numeric.Rd | 2 maxEff-0.2.3/maxEff/man/labels.node1.Rd | 2 maxEff-0.2.3/maxEff/man/maxEff-package.Rd | 8 --- maxEff-0.2.3/maxEff/man/node1.Rd | 14 +++++- maxEff-0.2.3/maxEff/man/predict_add_dummy.Rd | 4 - maxEff-0.2.3/maxEff/man/predict_add_numeric.Rd | 2 maxEff-0.2.3/maxEff/man/print.add_dummy.Rd | 2 maxEff-0.2.3/maxEff/man/sort_by.add_.Rd | 4 - maxEff-0.2.3/maxEff/man/splitd.Rd | 4 - maxEff-0.2.3/maxEff/man/statusPartition.Rd | 7 ++- maxEff-0.2.3/maxEff/man/subset.add_dummy.Rd | 4 - 30 files changed, 109 insertions(+), 109 deletions(-)
Title: Generalized Additive Models with Hyper Column
Description: Generalized additive models with a numeric hyper column. Sign-adjustment based on the correlation of model prediction and a selected slice of the hyper column. Visualization of the integrand surface over the hyper column.
Author: Tingting Zhan [aut, cre] ,
Erjia Cui [ctb]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between hyper.gam versions 0.2.2 dated 2026-02-05 and 0.2.3 dated 2026-03-02
hyper.gam-0.2.2/hyper.gam/build/vignette.rds |only hyper.gam-0.2.2/hyper.gam/inst/doc |only hyper.gam-0.2.2/hyper.gam/vignettes |only hyper.gam-0.2.3/hyper.gam/DESCRIPTION | 18 ++--- hyper.gam-0.2.3/hyper.gam/MD5 | 50 +++++++--------- hyper.gam-0.2.3/hyper.gam/NAMESPACE | 8 -- hyper.gam-0.2.3/hyper.gam/R/0PACKAGE.R | 9 +- hyper.gam-0.2.3/hyper.gam/R/cor_xy.R | 3 hyper.gam-0.2.3/hyper.gam/R/graphics.R | 6 - hyper.gam-0.2.3/hyper.gam/R/hyper_gam.R | 5 - hyper.gam-0.2.3/hyper.gam/R/integrandSurface.R | 5 - hyper.gam-0.2.3/hyper.gam/R/kfoldPredict.R | 4 - hyper.gam-0.2.3/hyper.gam/R/predict.hyper_gam.R | 5 - hyper.gam-0.2.3/hyper.gam/R/scale_do.R | 4 - hyper.gam-0.2.3/hyper.gam/R/sign_adjust.R | 2 hyper.gam-0.2.3/hyper.gam/R/update.R | 3 hyper.gam-0.2.3/hyper.gam/man/cor_xy.Rd | 2 hyper.gam-0.2.3/hyper.gam/man/hyper.gam-package.Rd | 6 - hyper.gam-0.2.3/hyper.gam/man/hyper_gam.Rd | 4 - hyper.gam-0.2.3/hyper.gam/man/hyper_gam_graphics.Rd | 4 - hyper.gam-0.2.3/hyper.gam/man/integrandSurface.Rd | 4 - hyper.gam-0.2.3/hyper.gam/man/kfoldPredict.hyper_gam.Rd | 2 hyper.gam-0.2.3/hyper.gam/man/predict.hyper_gam.Rd | 4 - hyper.gam-0.2.3/hyper.gam/man/scale_do.Rd | 4 - hyper.gam-0.2.3/hyper.gam/man/sign_adjust.Rd | 2 hyper.gam-0.2.3/hyper.gam/man/update.hyper_gam.Rd | 2 26 files changed, 67 insertions(+), 89 deletions(-)
Title: Simulated Grouped Hyper Data Frame
Description: An intuitive interface to simulate (1) superimposed (marked) point patterns with vectorized parameterization of random point pattern and distribution of marks; and (2) grouped hyper data frame based on population parameters and subject-specific random effects.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between groupedHyperframe.random versions 0.2.2 dated 2026-02-01 and 0.2.3 dated 2026-03-02
groupedHyperframe.random-0.2.2/groupedHyperframe.random/build |only groupedHyperframe.random-0.2.2/groupedHyperframe.random/inst |only groupedHyperframe.random-0.2.2/groupedHyperframe.random/vignettes |only groupedHyperframe.random-0.2.3/groupedHyperframe.random/DESCRIPTION | 11 +-- groupedHyperframe.random-0.2.3/groupedHyperframe.random/MD5 | 26 +++----- groupedHyperframe.random-0.2.3/groupedHyperframe.random/R/grouped_rppp.R | 31 ++++++---- groupedHyperframe.random-0.2.3/groupedHyperframe.random/R/mvrnorm2.R | 13 ++-- groupedHyperframe.random-0.2.3/groupedHyperframe.random/R/rfactor.R | 10 +-- groupedHyperframe.random-0.2.3/groupedHyperframe.random/R/rppp.R | 11 ++- groupedHyperframe.random-0.2.3/groupedHyperframe.random/man/dot-rppp.Rd | 9 +- groupedHyperframe.random-0.2.3/groupedHyperframe.random/man/groupedHyperframe.random-package.Rd | 1 groupedHyperframe.random-0.2.3/groupedHyperframe.random/man/grouped_rppp.Rd | 13 ++-- groupedHyperframe.random-0.2.3/groupedHyperframe.random/man/mvrnorm2.Rd | 11 ++- groupedHyperframe.random-0.2.3/groupedHyperframe.random/man/rfactor.Rd | 8 +- 14 files changed, 81 insertions(+), 63 deletions(-)
More information about groupedHyperframe.random at CRAN
Permanent link
Title: Access Finnish Geospatial Data
Description: Designed to simplify geospatial data access from the Statistics Finland Web Feature Service API <https://geo.stat.fi/geoserver/index.html>, the geofi package offers researchers and analysts a set of tools to obtain and harmonize administrative spatial data for a wide range of applications, from urban planning to environmental research. The package contains annually updated time series of municipality key datasets that can be used for data aggregation and language translations.
Author: Markus Kainu [aut, cre] ,
Joona Lehtomaki [aut] ,
Juuso Parkkinen [ctb] ,
Jani Miettinen [ctb],
Pyry Kantanen [ctb],
Sampo Vesanen [ctb],
Leo Lahti [aut]
Maintainer: Markus Kainu <markus.kainu@kapsi.fi>
Diff between geofi versions 1.1.0 dated 2025-04-29 and 1.2.0 dated 2026-03-02
DESCRIPTION | 19 +- MD5 | 106 ++++++------ NEWS.md | 5 R/check_api_access.R | 2 R/data.R | 240 ++++++++++++++++++++--------- R/get_municipalities.R | 6 R/get_municipality_pop.R | 2 R/get_population_grid.R | 2 R/get_statistical_grid.R | 4 R/get_zipcodes.R | 2 R/wfs_api.R | 28 +-- README.md | 14 - build/vignette.rds |binary data/municipality_key.rda |binary data/municipality_key_2013.rda |binary data/municipality_key_2014.rda |binary data/municipality_key_2015.rda |binary data/municipality_key_2016.rda |binary data/municipality_key_2017.rda |binary data/municipality_key_2018.rda |binary data/municipality_key_2019.rda |binary data/municipality_key_2020.rda |binary data/municipality_key_2021.rda |binary data/municipality_key_2022.rda |binary data/municipality_key_2023.rda |binary data/municipality_key_2024.rda |binary data/municipality_key_2025.rda |binary data/municipality_key_2026.rda |only inst/doc/geofi_datasets.Rmd | 8 inst/doc/geofi_datasets.html | 80 ++++----- inst/doc/geofi_geocoding.html | 5 inst/doc/geofi_joining_attribute_data.html | 9 - inst/doc/geofi_making_maps.html | 41 ++-- inst/doc/geofi_nls_ogc.Rmd | 4 inst/doc/geofi_nls_ogc.html | 14 - inst/doc/geofi_spatial_analysis.html | 35 ++-- inst/doc/geofi_statfi_ogc.R | 57 +++--- inst/doc/geofi_statfi_ogc.Rmd | 77 +++++---- inst/doc/geofi_statfi_ogc.html | 104 ++++++------ man/figures/readme_map-1.png |binary man/get_municipalities.Rd | 6 man/get_municipality_pop.Rd | 2 man/get_population_grid.Rd | 4 man/get_statistical_grid.Rd | 2 man/get_zipcodes.Rd | 2 man/municipality_key.Rd | 12 + man/municipality_key_2020.Rd | 6 man/municipality_key_2022.Rd | 4 man/municipality_key_2025.Rd | 14 - man/municipality_key_2026.Rd |only man/wfs_api.Rd | 8 tests/testthat/test-01-wfs.R | 2 vignettes/geofi_datasets.Rmd | 8 vignettes/geofi_nls_ogc.Rmd | 4 vignettes/geofi_statfi_ogc.Rmd | 77 +++++---- 55 files changed, 592 insertions(+), 423 deletions(-)
Title: Visualization and Analysis of Statistical Measures of Confidence
Description: Enables: (1) plotting two-dimensional confidence regions, (2) coverage analysis
of confidence region simulations, (3) calculating confidence intervals and the associated
actual coverage for binomial proportions, (4) calculating the support values and the
probability mass function of the Kaplan-Meier product-limit estimator, and (5) plotting
the actual coverage function associated with a confidence interval for the survivor
function from a randomly right-censored data set. Each is given in greater detail next.
(1) Plots the two-dimensional confidence region for probability distribution parameters
(supported distribution suffixes: cauchy, gamma, invgauss, logis, llogis, lnorm, norm, unif,
weibull) corresponding to a user-given complete or right-censored dataset and level of
significance. The crplot() algorithm plots more points in areas of greater curvature to
ensure a smooth appearance throughout the confidence region boundary. An alternative
heuristic plots a specified number of poin [...truncated...]
Author: Christopher Weld [aut, cre] ,
Kexin Feng [aut],
Hayeon Park [aut],
Yuxin Qin [aut],
Xingyu Wang [aut],
Heather Krehbiel [aut],
Lawrence Leemis [aut],
Yuan Chang [ctb],
Brock Crook [ctb],
Chris Kuebler [ctb],
Andrew Loh [ctb],
Xin Zhang [ctb]
Maintainer: Christopher Weld <ceweld241@gmail.com>
Diff between conf versions 1.9.2 dated 2025-08-27 and 1.9.3 dated 2026-03-02
DESCRIPTION | 10 +++++----- MD5 | 34 +++++++++++++++++----------------- R/conf-package.R | 2 +- inst/CITATION | 4 ++-- inst/doc/coversim.html | 4 ++-- inst/doc/crplot.html | 4 ++-- inst/doc/crplot_advanced.html | 4 ++-- inst/doc/km.outcomes.html | 4 ++-- inst/doc/km.pmf.html | 4 ++-- inst/doc/km.support.html | 4 ++-- inst/doc/km.surv.html | 4 ++-- man/binomTestMSE.Rd | 2 +- man/conf.Rd | 2 +- man/km.coverage.Rd | 2 +- man/km.outcomes.Rd | 2 +- man/km.pmf.Rd | 2 +- man/km.support.Rd | 2 +- man/km.surv.Rd | 2 +- 18 files changed, 46 insertions(+), 46 deletions(-)
Title: Model and Analyse Interval Data
Description: Implements methodologies for modelling interval data by Normal
and Skew-Normal distributions, considering appropriate parameterizations of
the variance-covariance matrix that takes into account the intrinsic nature of
interval data, and lead to four different possible configuration structures.
The Skew-Normal parameters can be estimated by maximum likelihood, while Normal
parameters may be estimated by maximum likelihood or robust trimmed maximum
likelihood methods.
Author: Pedro Duarte Silva [aut, cre],
Paula Brito [aut]
Maintainer: Pedro Duarte Silva <psilva@ucp.pt>
Diff between MAINT.Data versions 2.7.4 dated 2026-01-14 and 2.8.0 dated 2026-03-02
CHANGELOG | 18 DESCRIPTION | 8 MD5 | 24 - R/AgrMcDt.R | 6 R/ClasGenMetDef.R | 7 R/IData.R | 844 ++++++++++++++++++++++++---------------------- data/Abalone.RData |binary data/nycflights.RData |binary man/AgrMcDt.Rd | 6 man/IData-class.Rd | 1 man/IData.Rd | 20 - man/MAINT.Data-package.Rd | 4 src/msnCP_dev.h | 2 13 files changed, 517 insertions(+), 423 deletions(-)
Title: Dynamic Programming Based Gaussian Mixture Modelling Tool for 1D
and 2D Data
Description: Gaussian mixture modeling of one- and two-dimensional data, provided in original or binned form, with an option to estimate the number of model components. The method uses Gaussian Mixture Models (GMM) with initial parameters determined by a dynamic programming algorithm, leading to stable and reproducible model fitting. For more details see Zyla, J., Szumala, K., Polanski, A., Polanska, J., & Marczyk, M. (2026) <doi:10.1016/j.jocs.2026.102811>.
Author: Michal Marczyk [aut, ctb],
Kamila Szumala [aut, cre],
Joanna Zyla [aut, ctb]
Maintainer: Kamila Szumala <kamila.szumala@polsl.pl>
Diff between dpGMM versions 0.2.2 dated 2026-01-15 and 1.0.0 dated 2026-03-02
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design for MTA
Description: Phase I/II adaptive dose-finding design for single-agent
Molecularly Targeted Agent (MTA), according to the paper "Phase
I/II Dose-Finding Design for Molecularly Targeted Agent: Plateau
Determination using Adaptive Randomization", Riviere Marie-Karelle et
al. (2016) <doi:10.1177/0962280216631763>.
Author: Marie-Karelle Riviere [aut],
Jacques-Henri Jourdan [aut, cre]
Maintainer: Jacques-Henri Jourdan <jacques-henri.jourdan@cnrs.fr>
Diff between dfmta versions 1.7-6 dated 2024-09-30 and 1.7-8 dated 2026-03-02
DESCRIPTION | 8 MD5 | 8 build/partial.rdb |binary configure | 451 ++++++++++++++++++++++++++++-------------------------- src/dfmta.cpp | 126 +++++++-------- 5 files changed, 302 insertions(+), 291 deletions(-)
Title: Risk Assessments for Ecosystems or Ecosystem Components
Description: Implementation of a modular framework for ecosystem risk assessments,
combining existing risk assessment approaches tailored to semi-quantitative and
quantitative analyses.
Author: Helene Gutte [aut, cre, cph] ,
Saskia A. Otto [aut]
Maintainer: Helene Gutte <helenegutte96@gmail.com>
Diff between ecorisk versions 0.2.1 dated 2025-11-07 and 0.3.1 dated 2026-03-02
DESCRIPTION | 19 MD5 | 31 + NAMESPACE | 1 NEWS.md | 11 R/ecorisk-package.R |only R/model_sensitivity.R | 5 R/plot_diagnostic_sensitivity.R |only R/plot_heatmap.R | 26 + R/plot_radar.R | 23 - inst/doc/ecorisk.R | 8 inst/doc/ecorisk.Rmd | 15 inst/doc/ecorisk.html | 593 ++++++++++++++++--------------- man/ecorisk-package.Rd |only man/model_sensitivity.Rd | 3 man/plot_diagnostic_sensitivity.Rd |only tests/testthat/Rplots.pdf |only tests/testthat/_snaps |only tests/testthat/test-plotting_functions.R |only vignettes/ecorisk.Rmd | 15 19 files changed, 440 insertions(+), 310 deletions(-)
Title: Toolkit for Regression Analysis of Kazakhstan Banking Sector
Data
Description: Tool is created for regression, prediction and forecast analysis of macroeconomic and credit data.
The package includes functions from existing R packages adapted for banking sector of Kazakhstan.
The purpose of the package is to optimize statistical functions for easier interpretation for bank analysts and non-statisticians.
Author: Timur Abilkassymov [aut],
Shyngys Shuneyev [aut],
Alua Makhmetova [aut],
Sultan Zhaparov [aut, cre]
Maintainer: Sultan Zhaparov <saldau.sultan@gmail.com>
This is a re-admission after prior archival of version 0.3.7 dated 2025-08-28
Diff between AFR versions 0.3.7 dated 2025-08-28 and 0.3.8 dated 2026-03-02
DESCRIPTION | 15 +++++++-------- MD5 | 2 +- 2 files changed, 8 insertions(+), 9 deletions(-)
Title: Fast, Robust, and Outlier Resistant Hierarchical Clustering
Description: Implements a basic version of the hierarchical clustering algorithm
'Genie' which links two point groups in such a way that
an inequity measure (namely, the Gini index) of the cluster sizes
does not significantly increase above a given threshold.
This method most often outperforms many other data segmentation approaches
in terms of clustering quality as tested on a wide range of benchmark
datasets. At the same time, Genie retains the high speed of the single
linkage approach, therefore it is also suitable for analysing larger data sets.
For more details see (Gagolewski et al. 2016 <DOI:10.1016/j.ins.2016.05.003>).
For a faster and more feature-rich implementation, see the 'genieclust' package
(Gagolewski, 2021 <DOI:10.1016/j.softx.2021.100722>).
Author: Marek Gagolewski [aut, cre, cph] ,
Maciej Bartoszuk [aut] ,
Anna Cena [aut]
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between genie versions 1.0.6 dated 2025-12-01 and 1.0.7 dated 2026-03-02
genie-1.0.6/genie/src/hclust2_nnbased_gini.h |only genie-1.0.6/genie/src/hclust2_nnbased_single.cpp |only genie-1.0.6/genie/src/hclust2_nnbased_single.h |only genie-1.0.6/genie/src/hclust2_vptree_gini.h |only genie-1.0.6/genie/src/hclust2_vptree_single.cpp |only genie-1.0.6/genie/src/hclust2_vptree_single.h |only genie-1.0.6/genie/src/init.cpp |only genie-1.0.6/genie/tests |only genie-1.0.7/genie/DESCRIPTION | 18 ++++++++---------- genie-1.0.7/genie/MD5 | 23 +++++++---------------- genie-1.0.7/genie/NEWS | 5 +++++ genie-1.0.7/genie/src/defs.h | 4 ++-- genie-1.0.7/genie/src/hclust2_common.cpp | 22 +++++++++++----------- genie-1.0.7/genie/src/hclust2_common.h | 4 ++-- genie-1.0.7/genie/src/hclust2_mstbased_gini.cpp | 21 ++------------------- genie-1.0.7/genie/src/hclust2_rcpp_gini.cpp | 1 - 16 files changed, 37 insertions(+), 61 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design for Combination Studies
Description: Phase I/II adaptive dose-finding design for combination
studies where toxicity rates are supposed to increase with both agents.
Author: Marie-Karelle Riviere [aut],
Jacques-Henri Jourdan [aut, cre]
Maintainer: Jacques-Henri Jourdan <jacques-henri.jourdan@cnrs.fr>
Diff between dfcomb versions 3.1-4 dated 2024-09-30 and 3.1-5 dated 2026-03-02
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- build/partial.rdb |binary src/logistic.cpp | 18 +++++++----------- 4 files changed, 14 insertions(+), 18 deletions(-)
Title: Compute, Handle and Plot Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise
incidence from dated events for a defined time interval. Dates can be
provided in various standard formats. The class 'incidence2' is used to store
computed incidence and can be easily manipulated, subsetted, and plotted.
Author: Tim Taylor [aut, cre] ,
Thibaut Jombart [ctb]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between incidence2 versions 2.6.3 dated 2025-06-04 and 2.6.4 dated 2026-03-02
incidence2-2.6.3/incidence2/README.md |only incidence2-2.6.4/incidence2/DESCRIPTION | 8 incidence2-2.6.4/incidence2/MD5 | 58 +++--- incidence2-2.6.4/incidence2/NEWS.md | 4 incidence2-2.6.4/incidence2/R/defunct.R | 2 incidence2-2.6.4/incidence2/R/dplyr.R | 2 incidence2-2.6.4/incidence2/R/estimate_peak.R | 3 incidence2-2.6.4/incidence2/R/incidence.R | 57 +++--- incidence2-2.6.4/incidence2/R/plot.R | 20 -- incidence2-2.6.4/incidence2/R/regroup.R | 6 incidence2-2.6.4/incidence2/R/split.R | 4 incidence2-2.6.4/incidence2/R/summary.R | 2 incidence2-2.6.4/incidence2/R/utils.R | 9 - incidence2-2.6.4/incidence2/build/vignette.rds |binary incidence2-2.6.4/incidence2/inst/doc/incidence2.R | 30 +-- incidence2-2.6.4/incidence2/inst/doc/incidence2.Rmd | 43 ++--- incidence2-2.6.4/incidence2/inst/doc/incidence2.html | 84 ++++++---- incidence2-2.6.4/incidence2/man/as.Rd | 2 incidence2-2.6.4/incidence2/man/dplyr-verbs.Rd | 2 incidence2-2.6.4/incidence2/man/split.incidence2.Rd | 3 incidence2-2.6.4/incidence2/tests/testthat/_snaps/plot/influenza_plot.png |binary incidence2-2.6.4/incidence2/tests/testthat/test-bootstrap.R | 4 incidence2-2.6.4/incidence2/tests/testthat/test-complete_dates.R | 8 incidence2-2.6.4/incidence2/tests/testthat/test-cumulate.R | 5 incidence2-2.6.4/incidence2/tests/testthat/test-incidence.R | 49 ++--- incidence2-2.6.4/incidence2/tests/testthat/test-incidence_.R | 44 ++--- incidence2-2.6.4/incidence2/tests/testthat/test-keep.R | 5 incidence2-2.6.4/incidence2/tests/testthat/test-plot.R | 2 incidence2-2.6.4/incidence2/tests/testthat/test-subsetting_and_dplyr.R | 19 -- incidence2-2.6.4/incidence2/vignettes/assets |only incidence2-2.6.4/incidence2/vignettes/incidence2.Rmd | 43 ++--- 31 files changed, 264 insertions(+), 254 deletions(-)
Title: Bayesian Networks
Description: Probability propagation in Bayesian networks, also known as graphical independence networks. Documentation
of the package is provided in vignettes included in the package and in
the paper by Højsgaard (2012, <doi:10.18637/jss.v046.i10>).
See 'citation("gRain")' for details.
Author: Soeren Hoejsgaard [aut, cre]
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between gRain versions 1.4.5 dated 2024-10-17 and 1.4.6 dated 2026-03-02
gRain-1.4.5/gRain/inst/doc/grain.pdf |only gRain-1.4.5/gRain/vignettes/grain.html |only gRain-1.4.6/gRain/DESCRIPTION | 12 +- gRain-1.4.6/gRain/MD5 | 41 ++++------ gRain-1.4.6/gRain/NAMESPACE | 2 gRain-1.4.6/gRain/NEWS | 6 + gRain-1.4.6/gRain/R/cpt_pot_gather.R | 3 gRain-1.4.6/gRain/R/repeat_pattern.R | 27 ------ gRain-1.4.6/gRain/build/vignette.rds |binary gRain-1.4.6/gRain/demo/asia.R | 14 ++- gRain-1.4.6/gRain/inst/doc/grain.html |only gRain-1.4.6/gRain/inst/doc/grain.rmd | 1 gRain-1.4.6/gRain/src/Makevars | 4 gRain-1.4.6/gRain/src/Makevars.win | 3 gRain-1.4.6/gRain/vignettes/figures/grain-bn1-1.png |binary gRain-1.4.6/gRain/vignettes/figures/grain-bn2-1.png |binary gRain-1.4.6/gRain/vignettes/figures/grain-chest-LS-1.png |binary gRain-1.4.6/gRain/vignettes/figures/grain-unnamed-chunk-35-1.png |binary gRain-1.4.6/gRain/vignettes/figures/grain-unnamed-chunk-36-1.png |binary gRain-1.4.6/gRain/vignettes/figures/grain-unnamed-chunk-39-1.png |binary gRain-1.4.6/gRain/vignettes/figures/grain-unnamed-chunk-53-1.png |binary gRain-1.4.6/gRain/vignettes/grain.bib | 4 gRain-1.4.6/gRain/vignettes/grain.rmd | 1 23 files changed, 54 insertions(+), 64 deletions(-)
Title: Bayesian Estimation of (Sparse) Latent Factor Stochastic
Volatility Models
Description: Markov chain Monte Carlo (MCMC) sampler for fully Bayesian estimation of latent factor stochastic volatility models with interweaving <doi:10.1080/10618600.2017.1322091>. Sparsity can be achieved through the usage of Normal-Gamma priors on the factor loading matrix <doi:10.1016/j.jeconom.2018.11.007>.
Author: Gregor Kastner [aut, cre] ,
Darjus Hosszejni [ctb] ,
Luis Gruber [ctb]
Maintainer: Gregor Kastner <gregor.kastner@aau.at>
Diff between factorstochvol versions 1.1.0 dated 2023-11-24 and 1.1.1 dated 2026-03-02
DESCRIPTION | 16 - MD5 | 64 +++--- NEWS | 7 R/factorstochvol-package.R | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/paper.Rtex | 28 +- inst/doc/paper.pdf |binary man/factorstochvol-package.Rd | 1 man/predcond.Rd | 2 man/predcor.Rd | 2 man/predcov.Rd | 2 man/predh.Rd | 2 man/predprecWB.Rd | 4 src/sampler.cpp | 12 - src/update_fsv.cpp | 12 - vignettes/Figures/jss3813-comtimeplot-1.pdf |binary vignettes/Figures/jss3813-corimageplot-1.pdf |binary vignettes/Figures/jss3813-cortimeplot-1.pdf | 282 +++++++++++++-------------- vignettes/Figures/jss3813-evdiag-1.pdf |binary vignettes/Figures/jss3813-fsvprepdata-1.pdf |binary vignettes/Figures/jss3813-loadplot2-1.pdf |binary vignettes/Figures/jss3813-loadplot2-2.pdf |binary vignettes/Figures/jss3813-logdetcovn-1.pdf |binary vignettes/Figures/jss3813-plotsvlpred-1.pdf |binary vignettes/Figures/jss3813-preddist-1.pdf |binary vignettes/Figures/jss3813-svlbetaplot-1.pdf |binary vignettes/Figures/jss3813-svlplot-1.pdf |binary vignettes/Figures/jss3813-varplot-1.pdf | 237 +++++++++++----------- vignettes/Figures/jss3813-varplot2-1.pdf |binary vignettes/Figures/jss3813-voltimeplot-1.pdf |binary vignettes/paper.Rtex | 28 +- vignettes/ref.bib | 6 33 files changed, 355 insertions(+), 353 deletions(-)
More information about factorstochvol at CRAN
Permanent link
Title: Tracer from R
Description: 'BEAST2' (<https://www.beast2.org>) is a widely used
Bayesian phylogenetic tool, that uses DNA/RNA/protein data
and many model priors to create a posterior of jointly estimated
phylogenies and parameters.
'Tracer' (<https://github.com/beast-dev/tracer/>) is a GUI tool
to parse and analyze the files generated by 'BEAST2'.
This package provides a way to parse and analyze 'BEAST2' input
files without active user input, but using
R function calls instead.
Author: Richel J.C. Bilderbeek [aut, cre] ,
Joelle Barido-Sottani [rev] ,
Roberto Villegas-Diaz [ctb],
David Winter [rev]
Maintainer: Richel J.C. Bilderbeek <rjcbilderbeek@gmail.com>
Diff between tracerer versions 2.2.3 dated 2023-09-27 and 2.2.4 dated 2026-03-02
DESCRIPTION | 26 +++---- MD5 | 130 ++++++++++++++++++------------------- R/calc_act.R | 4 - R/calc_ess.R | 1 R/calc_esses.R | 7 + R/calc_geom_mean.R | 1 R/calc_hpd_interval.R | 1 R/calc_mode.R | 1 R/calc_stderr_mean.R | 1 R/calc_summary_stats.R | 33 +++++---- R/check_trace.R | 1 R/count_trees_in_file.R | 7 + R/cs_std_dev.R | 3 R/default_params_doc.R | 5 + R/extract_operators_lines.R | 9 +- R/get_path.R | 1 R/get_paths.R | 1 R/is_posterior.R | 3 R/is_trees_file.R | 19 ++--- R/is_trees_posterior.R | 1 R/parse_beast_log.R | 1 R/parse_beast_output_files.R | 10 +- R/parse_beast_posterior.R | 10 +- R/parse_beast_state.R | 5 - R/parse_beast_tracelog_file.R | 1 R/parse_beast_trees.R | 26 +++---- R/remove_burn_in.R | 1 R/remove_burn_ins.R | 1 R/save_beast_estimates.R | 5 - R/save_beast_trees.R | 8 +- R/tracerer-package.R | 18 ++--- build/vignette.rds |binary inst/CITATION | 2 inst/doc/demo.html | 12 +-- man/calc_act.Rd | 1 man/calc_act_r.Rd | 1 man/calc_ess.Rd | 1 man/calc_esses.Rd | 1 man/calc_geom_mean.Rd | 1 man/calc_hpd_interval.Rd | 1 man/calc_mode.Rd | 1 man/calc_stderr_mean.Rd | 1 man/calc_summary_stats.Rd | 29 ++++---- man/calc_summary_stats_trace.Rd | 5 - man/calc_summary_stats_traces.Rd | 5 - man/check_trace.Rd | 1 man/count_trees_in_file.Rd | 1 man/cs_std_dev.Rd | 5 - man/default_params_doc.Rd | 6 - man/extract_operators_lines.Rd | 1 man/get_tracerer_path.Rd | 1 man/get_tracerer_paths.Rd | 1 man/is_posterior.Rd | 1 man/is_trees_file.Rd | 1 man/is_trees_posterior.Rd | 1 man/parse_beast_log.Rd | 1 man/parse_beast_output_files.Rd | 10 +- man/parse_beast_posterior.Rd | 6 - man/parse_beast_state_operators.Rd | 1 man/parse_beast_tracelog_file.Rd | 1 man/parse_beast_trees.Rd | 1 man/remove_burn_in.Rd | 1 man/remove_burn_ins.Rd | 1 man/save_beast_estimates.Rd | 5 - man/save_beast_trees.Rd | 5 - man/tracerer-package.Rd | 18 ++--- 66 files changed, 264 insertions(+), 207 deletions(-)
Title: Calculation of IBD Probabilities
Description: For biparental, three and four-way crosses Identity by Descent
(IBD) probabilities can be calculated using Hidden Markov Models and
inheritance vectors following Lander and Green
(<https://www.jstor.org/stable/29713>) and Huang
(<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic
packages for streamlining the analysis of typical plant breeding experiments
developed by Biometris.
Author: Martin Boer [aut] ,
Bart-Jan van Rossum [aut, cre] ,
Wenhao Li [ctb] ,
Johannes Kruisselbrink [ctb]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenIBD versions 1.0.9 dated 2025-07-01 and 1.0.10 dated 2026-03-02
DESCRIPTION | 10 +- MD5 | 16 +-- NEWS.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/IBDCalculations.html | 11 +- inst/doc/IBDFileFormat.html | 9 + man/calcIBD.Rd | 210 +++++++++++++++++++++--------------------- src/calcIBD.cpp | 2 9 files changed, 134 insertions(+), 128 deletions(-)
Title: Tile Grid Maps for East Caucasian Languages
Description: Generates tile maps for the East Caucasian language family, inspired by the Typological Atlas of the Languages of Daghestan (TALD, <https://lingconlab.ru/tald/>). It leverages 'ggplot2' to create visually informative maps, displaying rectangles for each language and allowing for color-coding based on linguistic features. The package includes a built-in dataset of 56 languages and the template for their distribution and provides flexibility to customize the tile map's appearance. The default template can be modified via the ability to hide or rename languages. It's designed to be used with external data tables containing language information and features, offering a tool for visualizing the geographic distribution and linguistic characteristics of East Caucasian languages.
Author: George Moroz [aut, cre]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between RCaucTile versions 1.0.3 dated 2026-01-16 and 1.0.4 dated 2026-03-02
DESCRIPTION | 8 +++++--- MD5 | 12 ++++++------ NEWS | 5 +++++ R/ec_tile_map.R | 19 ++++++++++--------- README.md | 18 ++++++++++++++++++ data/ec_languages.rda |binary inst/CITATION | 4 +++- 7 files changed, 47 insertions(+), 19 deletions(-)
Title: Create and Maintain a Relational Database of Data from
PubMed/MEDLINE
Description: Provides a simple interface for extracting various elements from
the publicly available PubMed XML files, incorporating PubMed's regular
updates, and combining the data with the NIH Open Citation Collection. See
Schoenbachler and Hughey (2021) <doi:10.7717/peerj.11071>.
Author: Jake Hughey [aut, cre],
Josh Schoenbachler [aut],
Elliot Outland [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>
Diff between pmparser versions 1.0.24 dated 2026-02-05 and 1.0.25 dated 2026-03-02
pmparser-1.0.24/pmparser/tests/testthat/pubmed_sample/open_citation_collection.csv |only pmparser-1.0.25/pmparser/DESCRIPTION | 6 ++--- pmparser-1.0.25/pmparser/MD5 | 12 +++++----- pmparser-1.0.25/pmparser/NEWS.md | 3 ++ pmparser-1.0.25/pmparser/R/get_citation.R | 4 +-- pmparser-1.0.25/pmparser/man/getCitation.Rd | 2 - pmparser-1.0.25/pmparser/tests/testthat/pubmed_sample/open_citation_collection.zip |only pmparser-1.0.25/pmparser/tests/testthat/test_get_citation.R | 6 +++-- 8 files changed, 19 insertions(+), 14 deletions(-)
Title: High-Performance Matrix Market File Operations
Description: An interface to the 'fast_matrix_market' 'C++' library, this package offers efficient read and write operations for Matrix Market files in R. It supports both sparse and dense matrix formats. Peer-reviewed at 'rOpenSci' (<https://github.com/ropensci/software-review/issues/606>).
Author: Rohit Goswami [aut, cre] ,
Ildiko Czeller [rev] ,
Adam Lugowski [ctb]
Maintainer: Rohit Goswami <rgoswami@ieee.org>
This is a re-admission after prior archival of version 1.2.5 dated 2023-11-03
Diff between fastMatMR versions 1.2.5 dated 2023-11-03 and 1.2.7 dated 2026-03-02
fastMatMR-1.2.5/fastMatMR/inst/doc/fmm_read_bench.R |only fastMatMR-1.2.5/fastMatMR/inst/doc/fmm_write_bench.R |only fastMatMR-1.2.5/fastMatMR/inst/include |only fastMatMR-1.2.7/fastMatMR/DESCRIPTION | 22 - fastMatMR-1.2.7/fastMatMR/MD5 | 68 ++--- fastMatMR-1.2.7/fastMatMR/NAMESPACE | 4 fastMatMR-1.2.7/fastMatMR/NEWS.md | 23 + fastMatMR-1.2.7/fastMatMR/R/fastMatMR-package.R | 174 ++++++++++++- fastMatMR-1.2.7/fastMatMR/README.md | 52 +++- fastMatMR-1.2.7/fastMatMR/build/vignette.rds |binary fastMatMR-1.2.7/fastMatMR/inst/doc/fastMatMR.R | 20 - fastMatMR-1.2.7/fastMatMR/inst/doc/fastMatMR.html | 7 fastMatMR-1.2.7/fastMatMR/inst/doc/fmm_read_bench.html | 7 fastMatMR-1.2.7/fastMatMR/inst/doc/fmm_write_bench.html | 7 fastMatMR-1.2.7/fastMatMR/man/SparseM_to_fmm.Rd |only fastMatMR-1.2.7/fastMatMR/man/fmm_to_SparseM.Rd |only fastMatMR-1.2.7/fastMatMR/man/fmm_to_spam.Rd |only fastMatMR-1.2.7/fastMatMR/man/spam_to_fmm.Rd |only fastMatMR-1.2.7/fastMatMR/src/Makevars | 2 fastMatMR-1.2.7/fastMatMR/src/fast_matrix_market |only fastMatMR-1.2.7/fastMatMR/src/from_file.cpp | 12 fastMatMR-1.2.7/fastMatMR/src/to_file.cpp | 10 fastMatMR-1.2.7/fastMatMR/tests/testthat/test-read_fmm.R | 151 +++++++++++ fastMatMR-1.2.7/fastMatMR/tests/testthat/test-write_fmm.R | 180 ++++++++++++++ 24 files changed, 648 insertions(+), 91 deletions(-)
Title: Bayesian Ammi Model for Continuous Data with or without Additive
and Dominance Effect
Description: Flexible multi-environment trials analysis via MCMC method for Additive Main Effects and Multiplicative Interaction Model (AMMI) for continuous data.
Biplot with the averages and regions of confidence can be generated. The chains run in parallel on Linux systems and run serially on Windows.
Author: Fabio M. Correa [aut, cre] ,
Luciano A. Oliveira [aut],
Carlos P. Silva [aut],
Cristian T. E. Mendes [aut],
Alessandra Q. Silva [aut],
Joel J. Nuvunga [aut],
Larissa C. V. Boas [aut],
Marcio Balestre [ths],
Julio S. S. Bueno-Filho [ths]
Maintainer: Fabio M. Correa <fmcron@protonmail.com>
Diff between ammiBayes versions 1.0-3 dated 2025-04-19 and 2.1-1 dated 2026-03-02
ammiBayes-1.0-3/ammiBayes/R/sysdata.rda |only ammiBayes-2.1-1/ammiBayes/ChangeLog | 16 ammiBayes-2.1-1/ammiBayes/DESCRIPTION | 28 ammiBayes-2.1-1/ammiBayes/MD5 | 30 ammiBayes-2.1-1/ammiBayes/NAMESPACE | 5 ammiBayes-2.1-1/ammiBayes/R/graphics.R | 111 + ammiBayes-2.1-1/ammiBayes/R/interaction.R |only ammiBayes-2.1-1/ammiBayes/R/main.R | 1108 ++++++++++++++++++- ammiBayes-2.1-1/ammiBayes/R/output.R | 8 ammiBayes-2.1-1/ammiBayes/build/vignette.rds |binary ammiBayes-2.1-1/ammiBayes/data/ammiDominance.RData |only ammiBayes-2.1-1/ammiBayes/inst/CITATION | 3 ammiBayes-2.1-1/ammiBayes/inst/doc/vignette.pdf |binary ammiBayes-2.1-1/ammiBayes/man/AMMI.Rd |only ammiBayes-2.1-1/ammiBayes/man/AMMIGBlup.Rd |only ammiBayes-2.1-1/ammiBayes/man/AMMIGBlupD.Rd |only ammiBayes-2.1-1/ammiBayes/man/ammiBayes.Rd | 15 ammiBayes-2.1-1/ammiBayes/man/ammiBayes.conf.plot.Rd | 9 ammiBayes-2.1-1/ammiBayes/man/ammiDominance.Rd |only ammiBayes-2.1-1/ammiBayes/man/detect.interaction.Rd |only 20 files changed, 1244 insertions(+), 89 deletions(-)
Title: Treatment Effect Estimation for Time-to-Event Data with
Intercurrent Events
Description: Analysis of treatment effects in clinical trials with time-to-event outcomes is complicated by intercurrent events. This package implements methods for estimating and inferring the cumulative incidence functions for time-to-event (TTE) outcomes with intercurrent events (ICE) under the five strategies outlined in the ICH E9 (R1) addendum, see Deng (2025) <doi:10.1002/sim.70091>. This package can be used for analyzing data from both randomized controlled trials and observational studies. In general, the data involve a primary outcome event and, potentially, an intercurrent event. Two data structures are allowed: competing risks, where only the time to the first event is recorded, and semicompeting risks, where the times to both the primary outcome event and intercurrent event (or censoring) are recorded. For estimation methods, users can choose nonparametric estimation (which does not use covariates) and semiparametrically efficient estimation.
Author: Yuhao Deng [aut],
Yi Zhou [cre]
Maintainer: Yi Zhou <yzhou@pku.edu.cn>
Diff between tteICE versions 1.1.2 dated 2026-02-28 and 1.1.3 dated 2026-03-02
tteICE-1.1.2/tteICE/R/basehaz_tteICE.R |only tteICE-1.1.2/tteICE/man/basehaz.tteICE.Rd |only tteICE-1.1.3/tteICE/DESCRIPTION | 6 +++--- tteICE-1.1.3/tteICE/MD5 | 6 ++---- tteICE-1.1.3/tteICE/inst/tteICE.pdf |binary 5 files changed, 5 insertions(+), 7 deletions(-)
Title: Conduct Response Item Network (ResIN) Analysis with Social
Response Data
Description: Contains various tools to perform and visualize Response Item Networks ('ResIN's'). 'ResIN' dummy-codes ordered and qualitative response choices from (survey) data, calculates pairwise associations and maps the location of each item response as a node in a force-directed network. Please refer to <https://www.resinmethod.net/> for more details.
Author: Philip Warncke [cre, aut],
Dino Carpentras [aut],
Adrian Lueders [aut]
Maintainer: Philip Warncke <philip.warncke@ul.ie>
Diff between ResIN versions 2.2.1 dated 2025-07-30 and 2.3.0 dated 2026-03-02
ResIN-2.2.1/ResIN/man/autoplot.ResIN.Rd |only ResIN-2.3.0/ResIN/DESCRIPTION | 26 ResIN-2.3.0/ResIN/MD5 | 73 - ResIN-2.3.0/ResIN/NAMESPACE | 68 + ResIN-2.3.0/ResIN/NEWS.md |only ResIN-2.3.0/ResIN/R/Boostrap_example.R | 4 ResIN-2.3.0/ResIN/R/ResIN.R | 770 +++++++++++++--- ResIN-2.3.0/ResIN/R/ResIN_boots_draws.R |only ResIN-2.3.0/ResIN/R/ResIN_boots_execute.R | 189 +++- ResIN-2.3.0/ResIN/R/ResIN_boots_executed.R |only ResIN-2.3.0/ResIN/R/ResIN_boots_extract.R | 294 +++++- ResIN-2.3.0/ResIN/R/ResIN_boots_prepare.R | 111 +- ResIN-2.3.0/ResIN/R/ResIN_boots_prepped.R |only ResIN-2.3.0/ResIN/R/ResIN_to_gephi.R | 79 - ResIN-2.3.0/ResIN/R/ResIN_to_igraph.R | 28 ResIN-2.3.0/ResIN/R/ResIN_to_qgraph.R | 44 ResIN-2.3.0/ResIN/R/coercion-generics.R |only ResIN-2.3.0/ResIN/R/lik_data.R | 2 ResIN-2.3.0/ResIN/R/methods-ResIN.R | 1080 ++++++++++++++++++++++- ResIN-2.3.0/ResIN/R/reexports.R |only ResIN-2.3.0/ResIN/build/vignette.rds |binary ResIN-2.3.0/ResIN/inst/doc/ResIN-VIGNETTE.R | 7 ResIN-2.3.0/ResIN/inst/doc/ResIN-VIGNETTE.Rmd | 23 ResIN-2.3.0/ResIN/inst/doc/ResIN-VIGNETTE.html | 100 +- ResIN-2.3.0/ResIN/man/Bootstrap_example.Rd | 6 ResIN-2.3.0/ResIN/man/ResIN-coercion-generics.Rd |only ResIN-2.3.0/ResIN/man/ResIN-reexports.Rd |only ResIN-2.3.0/ResIN/man/ResIN.Rd | 58 - ResIN-2.3.0/ResIN/man/ResIN_boots_draws.Rd |only ResIN-2.3.0/ResIN/man/ResIN_boots_execute.Rd | 30 ResIN-2.3.0/ResIN/man/ResIN_boots_executed.Rd |only ResIN-2.3.0/ResIN/man/ResIN_boots_extract.Rd | 34 ResIN-2.3.0/ResIN/man/ResIN_boots_prepare.Rd | 17 ResIN-2.3.0/ResIN/man/ResIN_boots_prepped.Rd |only ResIN-2.3.0/ResIN/man/ResIN_to_gephi.Rd | 41 ResIN-2.3.0/ResIN/man/ResIN_to_igraph.Rd | 14 ResIN-2.3.0/ResIN/man/ResIN_to_qgraph.Rd | 16 ResIN-2.3.0/ResIN/man/as.gephi.ResIN.Rd |only ResIN-2.3.0/ResIN/man/as.graphsjl.Rd |only ResIN-2.3.0/ResIN/man/as.graphsjl.ResIN.Rd |only ResIN-2.3.0/ResIN/man/as.igraph.ResIN.Rd |only ResIN-2.3.0/ResIN/man/as.network.ResIN.Rd |only ResIN-2.3.0/ResIN/man/as.networkx.Rd |only ResIN-2.3.0/ResIN/man/as.networkx.ResIN.Rd |only ResIN-2.3.0/ResIN/man/as.qgraph.ResIN.Rd |only ResIN-2.3.0/ResIN/man/as.tidygraph.ResIN.Rd |only ResIN-2.3.0/ResIN/man/lik_data.Rd | 2 ResIN-2.3.0/ResIN/vignettes/ResIN-VIGNETTE.Rmd | 23 48 files changed, 2580 insertions(+), 559 deletions(-)
Title: Location and Scale Invariant Power Transformations
Description: Location- and scale-invariant Box-Cox and Yeo-Johnson power transformations
allow for transforming variables with distributions distant from 0 to
normality. Transformers are implemented as S4 objects. These allow for
transforming new instances to normality after optimising fitting parameters
on other data. A test for central normality allows for rejecting
transformations that fail to produce a suitably normal distribution,
independent of sample number.
Author: Alex Zwanenburg [aut, cre] ,
Steffen Loeck [aut],
German Cancer Research Center [cph]
Maintainer: Alex Zwanenburg <alexander.zwanenburg@nct-dresden.de>
Diff between power.transform versions 1.0.3 dated 2026-01-15 and 1.0.4 dated 2026-03-02
DESCRIPTION | 6 MD5 | 9 NEWS.md | 8 R/FindParameters.R | 662 +++++++++++++++++----------------- inst |only tests/testthat/test-goodness-of-fit.R | 618 +++++++++++++++---------------- 6 files changed, 656 insertions(+), 647 deletions(-)
More information about power.transform at CRAN
Permanent link
Title: Fit, Simulate and Diagnose Exponential-Family Random Graph
Models to Egocentrically Sampled Network Data
Description: Utilities for managing egocentrically sampled network data and a wrapper around the 'ergm' package to facilitate ERGM inference and simulation from such data. See Krivitsky and Morris (2017) <doi:10.1214/16-AOAS1010>.
Author: Pavel N. Krivitsky [aut, cre] ,
Steven M. Goodreau [ctb],
Martina Morris [ctb],
Kirk Li [ctb],
Emily N. Beylerian [ctb],
Michal Bojanowski [ctb] ,
Chad Klumb [ctb]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm.ego versions 1.1.3 dated 2025-06-10 and 1.1.4 dated 2026-03-02
DESCRIPTION | 21 ++++--- LICENSE | 2 MD5 | 89 +++++++++++++++++---------------- NAMESPACE | 1 R/EgoStat.R | 2 R/EgoStat.duration.R | 2 R/EgoStat.node.attr.R | 30 ----------- R/InitErgmTerm.R | 2 R/control.ergm.ego.R | 12 +--- R/control.simulate.ergm.ego.R | 2 R/degreedist.R | 2 R/egor.R | 13 ++-- R/ergm.ego.R | 19 ++----- R/fmhfit.R | 2 R/gof.ergm.ego.R | 4 - R/predict.ergm.ego.R | 2 R/reweight.egor.R | 2 R/simulate.ergm.ego.R | 10 +-- R/summary.ergm.ego.R | 2 R/summary.statistics.egor.R | 14 ++--- R/zzz.R | 4 + build/partial.rdb |only build/stage23.rdb |binary inst/CITATION | 12 ++-- inst/NEWS.Rd | 34 ++++++++++++ inst/REFERENCES.bib |only man/control.ergm.ego.Rd | 10 +-- man/ergm.ego.Rd | 10 +-- man/gof.ergm.ego.Rd | 4 - man/simulate.ergm.ego.Rd | 12 +--- man/summary_formula.egor.Rd | 11 +--- src/changestats.c | 2 src/include_stubs.c | 2 src/init.c | 2 tests/testthat.R | 2 tests/testthat/Rprof.out |only tests/testthat/test-EgoStat.R | 4 - tests/testthat/test-attrmismatch.R | 2 tests/testthat/test-boot_jack.R | 2 tests/testthat/test-coef_recovery.R | 2 tests/testthat/test-degreedist.R | 15 ++--- tests/testthat/test-drop.R | 2 tests/testthat/test-gof.ergm.ego.R | 37 +++++-------- tests/testthat/test-mixingmatrix.R | 8 +- tests/testthat/test-netsize.adj.R | 2 tests/testthat/test-predict.ergm.ego.R | 10 +-- tests/testthat/test-table_ppop.R | 4 - 47 files changed, 204 insertions(+), 222 deletions(-)
Title: Package Documentation Websites with 'Quarto', 'Docsify',
'Docute', or 'MkDocs'
Description: This is a simple and powerful package to create, render, preview,
and deploy documentation websites for 'R' packages. It is a lightweight and
flexible alternative to 'pkgdown', with support for many documentation
generators, including 'Quarto', 'Docute', 'Docsify', and 'MkDocs'.
Author: Etienne Bacher [aut, cre, cph],
Vincent Arel-Bundock [aut]
Maintainer: Etienne Bacher <etienne.bacher@protonmail.com>
This is a re-admission after prior archival of version 0.7.1 dated 2026-02-17
Diff between altdoc versions 0.7.1 dated 2026-02-17 and 0.7.2 dated 2026-03-02
DESCRIPTION | 6 MD5 | 56 NEWS.md | 4 build/vignette.rds |binary tests/testthat/_snaps/docsify/render_docs.md | 898 +++++----- tests/testthat/_snaps/docsify/render_docs/index.html | 2 tests/testthat/_snaps/docute/render_docs.md | 878 ++++----- tests/testthat/_snaps/mkdocs/render_docs.md | 498 ++--- tests/testthat/_snaps/rd2qmd/long_title.qmd | 30 tests/testthat/examples/examples-man/between.Rd | 36 tests/testthat/examples/examples-man/between.md | 80 tests/testthat/examples/examples-man/is-internal.Rd | 36 tests/testthat/examples/examples-man/should-fail.Rd | 34 tests/testthat/examples/examples-qmd/with-preamble.qmd | 26 tests/testthat/examples/examples-qmd/without-preamble.qmd | 16 tests/testthat/examples/examples-vignettes/several-outputs.Rmd | 48 tests/testthat/examples/examples-vignettes/with-figure.Rmd | 50 tests/testthat/examples/examples-yaml/basic.Rmd | 20 tests/testthat/examples/examples-yaml/options.Rmd | 28 tests/testthat/examples/examples-yaml/several-outputs.Rmd | 32 tests/testthat/examples/testpkg.altdoc/NEWS.md | 18 tests/testthat/examples/testpkg.altdoc/README.Rmd | 82 tests/testthat/examples/testpkg.altdoc/README.md | 72 tests/testthat/examples/testpkg.altdoc/man/examplesIf_false.Rd | 44 tests/testthat/examples/testpkg.altdoc/man/examplesIf_true.Rd | 44 tests/testthat/examples/testpkg.altdoc/man/hello_base.Rd | 74 tests/testthat/examples/testpkg.altdoc/man/hello_r6.Rd | 178 - tests/testthat/examples/testpkg.altdoc/vignettes/test.Rmd | 42 tests/testthat/test-render_docs.R | 3 29 files changed, 1671 insertions(+), 1664 deletions(-)
Title: Congruence Class Models for Networks
Description: Provides an implementation of Congruence Class Models for
generating networks. It facilitates sampling networks based
on specific topological properties and attribute mixing patterns using
a Markov Chain Monte Carlo framework. The implementation builds upon code
from the 'ergm' package; see Handcock et al. (2008) <doi:10.18637/jss.v024.i01>.
Author: Ravi Goyal [aut, cre],
Statnet Development Team [ctb, cph]
Maintainer: Ravi Goyal <ravi.j.goyal@gmail.com>
Diff between CCMnet versions 0.1.6 dated 2026-02-18 and 1.0.0 dated 2026-03-02
CCMnet-0.1.6/CCMnet/R/CCMnet_diagnostics_traceplot.R |only CCMnet-0.1.6/CCMnet/man/CCM_theoretical_check.Rd |only CCMnet-0.1.6/CCMnet/man/CCM_traceplot.Rd |only CCMnet-1.0.0/CCMnet/DESCRIPTION | 6 CCMnet-1.0.0/CCMnet/MD5 | 69 +- CCMnet-1.0.0/CCMnet/NAMESPACE | 9 CCMnet-1.0.0/CCMnet/R/CCMnet_MissingInf_Update_Prob_Distr_Params.R | 14 CCMnet-1.0.0/CCMnet/R/CCMnet_MissingInf_generate_partial_network.R | 4 CCMnet-1.0.0/CCMnet/R/CCMnet_Sample.R | 87 +- CCMnet-1.0.0/CCMnet/R/CCMnet_Sample_methods.R | 205 ++++-- CCMnet-1.0.0/CCMnet/R/CCMnet_StructAssess_plot_network.R | 2 CCMnet-1.0.0/CCMnet/R/CCMnet_constr_bi.R | 42 - CCMnet-1.0.0/CCMnet/R/CCMnet_constr_uni.R | 44 - CCMnet-1.0.0/CCMnet/R/CCMnet_constr_uni_initalstat.R | 16 CCMnet-1.0.0/CCMnet/R/CCMnet_constr_uni_obs_stats.R | 28 CCMnet-1.0.0/CCMnet/R/CCMnet_constr_uni_verifyinput.R | 107 +-- CCMnet-1.0.0/CCMnet/R/CCMnet_constr_uni_verifyinput_degdist.R | 97 +-- CCMnet-1.0.0/CCMnet/R/CCMnet_constr_uni_verifyinput_degmxing.R | 2 CCMnet-1.0.0/CCMnet/R/CCMnet_constr_uni_verifyinput_degmxing_clustering.R | 4 CCMnet-1.0.0/CCMnet/R/CCMnet_constr_uni_verifyinput_edges.R | 215 ++---- CCMnet-1.0.0/CCMnet/R/CCMnet_constr_uni_verifyinput_mixing.R | 2 CCMnet-1.0.0/CCMnet/R/CCMnet_constr_uni_verifyinput_mixing_degdist.R | 6 CCMnet-1.0.0/CCMnet/R/CCMnet_tests_degree.R | 2 CCMnet-1.0.0/CCMnet/R/CCMnet_theoretical_check.R | 68 +- CCMnet-1.0.0/CCMnet/R/CCMnet_theoretical_check_degmix.R | 4 CCMnet-1.0.0/CCMnet/R/CCMnet_theoretical_check_degmixclustering.R | 6 CCMnet-1.0.0/CCMnet/R/CCMnet_theoretical_check_degree.R | 4 CCMnet-1.0.0/CCMnet/R/CCMnet_theoretical_check_degree_mixing.R | 6 CCMnet-1.0.0/CCMnet/R/CCMnet_theoretical_check_density.R | 8 CCMnet-1.0.0/CCMnet/R/CCMnet_theoretical_check_mixing.R | 8 CCMnet-1.0.0/CCMnet/R/CCMnet_utils.R | 88 ++ CCMnet-1.0.0/CCMnet/inst/doc/CCMnet_introduction.R | 83 +- CCMnet-1.0.0/CCMnet/inst/doc/CCMnet_introduction.Rmd | 83 +- CCMnet-1.0.0/CCMnet/inst/doc/CCMnet_introduction.html | 312 +++++----- CCMnet-1.0.0/CCMnet/man/plot.ccm_sample.Rd |only CCMnet-1.0.0/CCMnet/man/sample_ccm.Rd | 82 +- CCMnet-1.0.0/CCMnet/man/sample_theoretical.Rd |only CCMnet-1.0.0/CCMnet/vignettes/CCMnet_introduction.Rmd | 83 +- 38 files changed, 1059 insertions(+), 737 deletions(-)
Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population)
models from 'NONMEM' <https://www.iconplc.com/solutions/technologies/nonmem/>.
'xpose' facilitates data import, creation of numerical run summary
and provide 'ggplot2'-based graphics for data exploration and model
diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph],
Andrew C. Hooker [aut, cph],
Sebastian Ueckert [aut, cph],
Mike K. Smith [ctb],
Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>
Diff between xpose versions 0.4.22 dated 2025-11-24 and 0.4.23 dated 2026-03-02
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 5 ++++- R/vpc_data.R | 12 ++++++------ R/zzz.R | 4 ++-- build/vignette.rds |binary inst/doc/access_xpdb_data.html | 2 +- inst/doc/customize_plots.html | 34 +++++++++++++++++----------------- inst/doc/import_model_outputs.html | 2 +- inst/doc/introduction.html | 10 +++++----- inst/doc/multiple_pages.html | 14 +++++++------- inst/doc/vpc.html | 8 ++++---- tests/testthat/test-vpc.R | 18 +++++++++++++++--- 13 files changed, 77 insertions(+), 62 deletions(-)
Title: Fast and Scalable Cellwise-Robust Ensemble
Description: Functions to perform robust variable selection and regression using the Fast and Scalable
Cellwise-Robust Ensemble (FSCRE) algorithm. The approach establishes a robust foundation
using the Detect Deviating Cells (DDC) algorithm and robust correlation estimates. It then
employs a competitive ensemble architecture where a robust Least Angle Regression (LARS)
engine proposes candidate variables and cross-validation arbitrates their assignment. A final
robust MM-estimator is applied to the selected predictors.
Author: Anthony Christidis [aut, cre],
Gabriela Cohen-Freue [aut]
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between srlars versions 1.0.1 dated 2023-07-16 and 2.0.0 dated 2026-03-02
srlars-1.0.1/srlars/R/Coefficients.R |only srlars-1.0.1/srlars/R/DataCheck.R |only srlars-1.0.1/srlars/R/Predictions.R |only srlars-1.0.1/srlars/R/add_optimal_predictor.R |only srlars-1.0.1/srlars/R/find_optimal.R |only srlars-1.0.1/srlars/R/initialize_ensembles.R |only srlars-1.0.1/srlars/R/remove_optimal_predictor.R |only srlars-1.0.1/srlars/tests/testthat/test_srlars.R |only srlars-2.0.0/srlars/DESCRIPTION | 27 - srlars-2.0.0/srlars/MD5 | 39 +- srlars-2.0.0/srlars/NAMESPACE | 10 srlars-2.0.0/srlars/NEWS.md | 3 srlars-2.0.0/srlars/R/checkInputData.R |only srlars-2.0.0/srlars/R/coef.srlars.R |only srlars-2.0.0/srlars/R/computeCVError.R |only srlars-2.0.0/srlars/R/computeFinalFit.R |only srlars-2.0.0/srlars/R/computeRobustFoundation.R |only srlars-2.0.0/srlars/R/getLarsProposal.R |only srlars-2.0.0/srlars/R/performSelectionLoop.R |only srlars-2.0.0/srlars/R/predict.srlars.R |only srlars-2.0.0/srlars/R/srlars.R | 306 ++++++--------------- srlars-2.0.0/srlars/README.md | 4 srlars-2.0.0/srlars/man/checkInputData.Rd |only srlars-2.0.0/srlars/man/coef.srlars.Rd | 85 ++--- srlars-2.0.0/srlars/man/computeCVError.Rd |only srlars-2.0.0/srlars/man/computeFinalFit.Rd |only srlars-2.0.0/srlars/man/computeRobustFoundation.Rd |only srlars-2.0.0/srlars/man/getLarsProposal.Rd |only srlars-2.0.0/srlars/man/performSelectionLoop.Rd |only srlars-2.0.0/srlars/man/predict.srlars.Rd | 75 ++--- srlars-2.0.0/srlars/man/srlars.Rd | 92 ++---- srlars-2.0.0/srlars/tests/testthat/test-srlars.R |only 32 files changed, 242 insertions(+), 399 deletions(-)
Title: Create Standalone and Composite Plots in 'ggplot2' for
Publications
Description: Provides functions for creating and annotating a composite plot in 'ggplot2'. Offers background themes and shortcut plotting functions that produce figures that are appropriate for the format of scientific journals. Some methods are described in Min and Zhou (2021) <doi:10.3389/fgene.2021.802894>.
Author: Seung Hyun Min [aut, cre]
Maintainer: Seung Hyun Min <seung.min@mail.mcgill.ca>
Diff between smplot2 versions 0.2.5 dated 2025-01-26 and 0.2.6 dated 2026-03-02
DESCRIPTION | 6 +-- MD5 | 94 ++++++++++++++++++++++++------------------------ R/sm_hgrid.R | 8 ++-- R/sm_hvgrid.R | 8 ++-- R/sm_vgrid.R | 8 ++-- R/sm_violin.R | 2 - README.md | 4 +- man/figures/logo.png |binary man/sm_add_legend.Rd | 30 +++++++++------ man/sm_add_point.Rd | 14 ++++--- man/sm_add_text.Rd | 15 ++++--- man/sm_auc.Rd | 10 ++--- man/sm_auc_all.Rd | 19 +++++---- man/sm_bar.Rd | 14 +++---- man/sm_bland_altman.Rd | 2 - man/sm_boxplot.Rd | 18 ++++----- man/sm_ci.Rd | 4 +- man/sm_classic.Rd | 4 +- man/sm_color.Rd | 4 +- man/sm_common_axis.Rd | 17 ++++---- man/sm_common_legend.Rd | 14 ++++--- man/sm_common_title.Rd | 2 - man/sm_common_xlabel.Rd | 2 - man/sm_common_ylabel.Rd | 2 - man/sm_corr_avgErr.Rd | 8 ++-- man/sm_effsize.Rd | 4 +- man/sm_forest.Rd | 22 ++++++----- man/sm_forest_annot.Rd | 20 +++++----- man/sm_hgrid.Rd | 4 +- man/sm_hist.Rd | 27 +++++++------ man/sm_hvgrid.Rd | 4 +- man/sm_hvgrid_minor.Rd | 4 +- man/sm_minimal.Rd | 4 +- man/sm_panel_label.Rd | 16 +++++--- man/sm_plot_clean.Rd | 10 +++-- man/sm_pointplot.Rd | 2 - man/sm_power.Rd | 4 +- man/sm_put_together.Rd | 30 +++++++++------ man/sm_raincloud.Rd | 23 +++++------ man/sm_slope.Rd | 16 ++++---- man/sm_slope_all.Rd | 20 +++++----- man/sm_slope_mean.Rd | 18 +++++---- man/sm_slope_theme.Rd | 4 +- man/sm_statBlandAlt.Rd | 2 - man/sm_statCorr.Rd | 10 ++--- man/sm_stdErr.Rd | 4 -- man/sm_vgrid.Rd | 4 +- man/sm_violin.Rd | 10 ++--- 48 files changed, 302 insertions(+), 269 deletions(-)
Title: Instrumental-Variables Regression by '2SLS', '2SM', or '2SMM',
with Diagnostics
Description: Instrumental variable estimation for linear models by two-stage least-squares (2SLS) regression or by robust-regression via M-estimation (2SM) or MM-estimation (2SMM). The main ivreg() model-fitting function is designed to provide a workflow as similar as possible to standard lm() regression. A wide range of methods is provided for fitted ivreg model objects, including extensive functionality for computing and graphing regression diagnostics in addition to other standard model tools.
Author: John Fox [aut] ,
Christian Kleiber [aut] ,
Achim Zeileis [aut, cre] ,
Nikolas Kuschnig [ctb] ,
R Core Team [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between ivreg versions 0.6-6 dated 2026-02-09 and 0.6-7 dated 2026-03-02
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 3 +++ NEWS.md | 10 ++++++++++ R/ivregDiagnostics.R | 12 ++++++++++++ tests/testthat/test-case-deletion.R | 4 ++-- 6 files changed, 36 insertions(+), 11 deletions(-)
Title: Grouped Hyper Data Frame
Description: An S3 class 'groupedHyperframe' that inherits from
the hyper data frame class from the 'spatstat' packages.
Batch process and aggregation of the hyper column(s)
over a nested grouping structure.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between groupedHyperframe versions 0.3.4 dated 2026-02-01 and 0.3.5 dated 2026-03-02
groupedHyperframe-0.3.4/groupedHyperframe/build |only groupedHyperframe-0.3.4/groupedHyperframe/inst/doc |only groupedHyperframe-0.3.4/groupedHyperframe/vignettes |only groupedHyperframe-0.3.5/groupedHyperframe/DESCRIPTION | 17 groupedHyperframe-0.3.5/groupedHyperframe/MD5 | 216 ++++------ groupedHyperframe-0.3.5/groupedHyperframe/NAMESPACE | 18 groupedHyperframe-0.3.5/groupedHyperframe/R/0PACKAGE.R | 12 groupedHyperframe-0.3.5/groupedHyperframe/R/Defunct.R | 2 groupedHyperframe-0.3.5/groupedHyperframe/R/Math.R | 41 + groupedHyperframe-0.3.5/groupedHyperframe/R/Surv.R | 2 groupedHyperframe-0.3.5/groupedHyperframe/R/aggregate.R | 15 groupedHyperframe-0.3.5/groupedHyperframe/R/aggregate_marks.R | 24 - groupedHyperframe-0.3.5/groupedHyperframe/R/append_marks.R | 3 groupedHyperframe-0.3.5/groupedHyperframe/R/as.groupedHyperframe.R | 5 groupedHyperframe-0.3.5/groupedHyperframe/R/attr_.R | 11 groupedHyperframe-0.3.5/groupedHyperframe/R/cash_set.R | 7 groupedHyperframe-0.3.5/groupedHyperframe/R/cbind.groupedHyperframe.R | 5 groupedHyperframe-0.3.5/groupedHyperframe/R/cor_spatial.R | 7 groupedHyperframe-0.3.5/groupedHyperframe/R/density_marks.R | 12 groupedHyperframe-0.3.5/groupedHyperframe/R/fvlist.R | 7 groupedHyperframe-0.3.5/groupedHyperframe/R/groupedHyperframe.R | 8 groupedHyperframe-0.3.5/groupedHyperframe/R/grouped_ppp.R | 6 groupedHyperframe-0.3.5/groupedHyperframe/R/hyperframe_S3.R | 3 groupedHyperframe-0.3.5/groupedHyperframe/R/interpolation.fv.R | 7 groupedHyperframe-0.3.5/groupedHyperframe/R/kerndens.R | 13 groupedHyperframe-0.3.5/groupedHyperframe/R/key1val.R | 7 groupedHyperframe-0.3.5/groupedHyperframe/R/kmeans.R | 10 groupedHyperframe-0.3.5/groupedHyperframe/R/kmeans_S3.R | 11 groupedHyperframe-0.3.5/groupedHyperframe/R/ksmooth.fv.R | 3 groupedHyperframe-0.3.5/groupedHyperframe/R/lastLegal.R | 3 groupedHyperframe-0.3.5/groupedHyperframe/R/loess.fv.R | 6 groupedHyperframe-0.3.5/groupedHyperframe/R/mc_identical_by.R | 166 +++---- groupedHyperframe-0.3.5/groupedHyperframe/R/nncross.R | 11 groupedHyperframe-0.3.5/groupedHyperframe/R/op_hyperframe.R | 9 groupedHyperframe-0.3.5/groupedHyperframe/R/op_ppp.R | 9 groupedHyperframe-0.3.5/groupedHyperframe/R/op_ppplist.R | 9 groupedHyperframe-0.3.5/groupedHyperframe/R/pmean.R | 7 groupedHyperframe-0.3.5/groupedHyperframe/R/ppp_S3.R | 9 groupedHyperframe-0.3.5/groupedHyperframe/R/quantile.R | 18 groupedHyperframe-0.3.5/groupedHyperframe/R/rlabelRes.R | 7 groupedHyperframe-0.3.5/groupedHyperframe/R/rmax.R | 3 groupedHyperframe-0.3.5/groupedHyperframe/R/smooth.spline.fv.R | 6 groupedHyperframe-0.3.5/groupedHyperframe/R/subset_ppp_tzh.R | 2 groupedHyperframe-0.3.5/groupedHyperframe/R/superimpose.hyperframe.R | 5 groupedHyperframe-0.3.5/groupedHyperframe/R/vectorlist.R | 10 groupedHyperframe-0.3.5/groupedHyperframe/R/vignette.R | 6 groupedHyperframe-0.3.5/groupedHyperframe/R/vtrapz.R | 21 groupedHyperframe-0.3.5/groupedHyperframe/man/aggregate.hyperframe.Rd | 15 groupedHyperframe-0.3.5/groupedHyperframe/man/aggregate_marks.Rd | 21 groupedHyperframe-0.3.5/groupedHyperframe/man/append_marks_set.Rd | 3 groupedHyperframe-0.3.5/groupedHyperframe/man/as.fvlist.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/as.groupedHyperframe.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/as.matrix.pairwise_cor_spatial.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/as.vectorlist.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/attr_.Rd | 9 groupedHyperframe-0.3.5/groupedHyperframe/man/batch.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/cash-set-.groupedHyperframe.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/cbind.groupedHyperframe.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/cumvtrapz.Rd | 11 groupedHyperframe-0.3.5/groupedHyperframe/man/defunct.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/density_marks.Rd | 11 groupedHyperframe-0.3.5/groupedHyperframe/man/dot-nncross.Rd | 11 groupedHyperframe-0.3.5/groupedHyperframe/man/global_envelope_test_.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/groupGeneric_fvlist.Rd | 7 groupedHyperframe-0.3.5/groupedHyperframe/man/groupGeneric_ppp.Rd | 8 groupedHyperframe-0.3.5/groupedHyperframe/man/groupGeneric_ppplist.Rd | 7 groupedHyperframe-0.3.5/groupedHyperframe/man/groupGeneric_psp.Rd | 11 groupedHyperframe-0.3.5/groupedHyperframe/man/groupGeneric_tess.Rd | 8 groupedHyperframe-0.3.5/groupedHyperframe/man/groupedHyperframe-package.Rd | 9 groupedHyperframe-0.3.5/groupedHyperframe/man/grouped_ppp.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/interpolation_fv.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/is.fvlist.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/kerndens.Rd | 11 groupedHyperframe-0.3.5/groupedHyperframe/man/keyval.Rd | 7 groupedHyperframe-0.3.5/groupedHyperframe/man/kmeans_etc.Rd | 9 groupedHyperframe-0.3.5/groupedHyperframe/man/ksmooth.fv.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/lastLegal.Rd | 3 groupedHyperframe-0.3.5/groupedHyperframe/man/length.hyperframe.Rd | 3 groupedHyperframe-0.3.5/groupedHyperframe/man/loess.fv.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/mc_identical_by.Rd | 6 groupedHyperframe-0.3.5/groupedHyperframe/man/methods2kable.Rd | 4 groupedHyperframe-0.3.5/groupedHyperframe/man/na_fail_ppp.Rd | 7 groupedHyperframe-0.3.5/groupedHyperframe/man/op_hyperframe.Rd | 4 groupedHyperframe-0.3.5/groupedHyperframe/man/op_ppplist.Rd | 9 groupedHyperframe-0.3.5/groupedHyperframe/man/pairwise_cor_spatial.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/plot.pppkm.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/pmean.Rd | 7 groupedHyperframe-0.3.5/groupedHyperframe/man/ppp2..Rd | 9 groupedHyperframe-0.3.5/groupedHyperframe/man/print.groupedHyperframe.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/print.pppkm.Rd | 3 groupedHyperframe-0.3.5/groupedHyperframe/man/print.summary.groupedHyperframe.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/quantile.anylist.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/quantile.hyperframe.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/quantile.ppp.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/quantile.ppplist.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/rlabelRes.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/rmax.Rd | 3 groupedHyperframe-0.3.5/groupedHyperframe/man/smooth.spline.fv.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/split.hyperframekm.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/split.pppkm.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/split.pppkmlist.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/sub-.groupedHyperframe.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/sub-.ppp_tzh.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/summary.Surv.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/summary.groupedHyperframe.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/superimpose.hyperframe.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/t.vectorlist.Rd | 5 groupedHyperframe-0.3.5/groupedHyperframe/man/visualize_vtrapz.Rd | 2 groupedHyperframe-0.3.5/groupedHyperframe/man/vtrapz.Rd | 4 109 files changed, 650 insertions(+), 462 deletions(-)
More information about groupedHyperframe at CRAN
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Title: Spherical Trigonometry
Description: Spherical trigonometry for geographic applications. That is, compute distances and related measures for angular (longitude/latitude) locations.
Author: Robert J. Hijmans [cre, aut],
Charles Karney [ctb] ,
Ed Williams [ctb],
Chris Vennes [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between geosphere versions 1.5-20 dated 2024-10-04 and 1.6-5 dated 2026-03-02
geosphere-1.5-20/geosphere/src/AlbersEqualArea.cpp |only geosphere-1.5-20/geosphere/src/AlbersEqualArea.h |only geosphere-1.5-20/geosphere/src/AzimuthalEquidistant.cpp |only geosphere-1.5-20/geosphere/src/AzimuthalEquidistant.h |only geosphere-1.5-20/geosphere/src/CassiniSoldner.cpp |only geosphere-1.5-20/geosphere/src/CassiniSoldner.h |only geosphere-1.5-20/geosphere/src/CircularEngine.cpp |only geosphere-1.5-20/geosphere/src/CircularEngine.h |only geosphere-1.5-20/geosphere/src/DMS.cpp |only geosphere-1.5-20/geosphere/src/DMS.h |only geosphere-1.5-20/geosphere/src/Ellipsoid.cpp |only geosphere-1.5-20/geosphere/src/Ellipsoid.h |only geosphere-1.5-20/geosphere/src/GARS.cpp |only geosphere-1.5-20/geosphere/src/GARS.h |only geosphere-1.5-20/geosphere/src/GeoCoords.cpp |only geosphere-1.5-20/geosphere/src/GeoCoords.h |only geosphere-1.5-20/geosphere/src/Geocentric.cpp |only geosphere-1.5-20/geosphere/src/Geocentric.h |only geosphere-1.5-20/geosphere/src/GeodesicExactC4.cpp |only geosphere-1.5-20/geosphere/src/Geohash.cpp |only geosphere-1.5-20/geosphere/src/Geohash.h |only geosphere-1.5-20/geosphere/src/Geoid.cpp |only geosphere-1.5-20/geosphere/src/Geoid.h |only geosphere-1.5-20/geosphere/src/Georef.cpp |only geosphere-1.5-20/geosphere/src/Georef.h |only geosphere-1.5-20/geosphere/src/Gnomonic.cpp |only geosphere-1.5-20/geosphere/src/Gnomonic.h |only geosphere-1.5-20/geosphere/src/GravityCircle.cpp |only geosphere-1.5-20/geosphere/src/GravityCircle.h |only geosphere-1.5-20/geosphere/src/GravityModel.cpp |only geosphere-1.5-20/geosphere/src/GravityModel.h |only geosphere-1.5-20/geosphere/src/LambertConformalConic.cpp |only geosphere-1.5-20/geosphere/src/LambertConformalConic.h |only geosphere-1.5-20/geosphere/src/LocalCartesian.cpp |only geosphere-1.5-20/geosphere/src/LocalCartesian.h |only geosphere-1.5-20/geosphere/src/MGRS.cpp |only geosphere-1.5-20/geosphere/src/MGRS.h |only geosphere-1.5-20/geosphere/src/MagneticCircle.cpp |only geosphere-1.5-20/geosphere/src/MagneticCircle.h |only geosphere-1.5-20/geosphere/src/MagneticModel.cpp |only geosphere-1.5-20/geosphere/src/MagneticModel.h |only geosphere-1.5-20/geosphere/src/NearestNeighbor.h |only geosphere-1.5-20/geosphere/src/NormalGravity.cpp |only geosphere-1.5-20/geosphere/src/NormalGravity.h |only geosphere-1.5-20/geosphere/src/PolarStereographic.cpp |only geosphere-1.5-20/geosphere/src/PolarStereographic.h |only geosphere-1.5-20/geosphere/src/SphericalEngine.cpp |only geosphere-1.5-20/geosphere/src/SphericalEngine.h |only geosphere-1.5-20/geosphere/src/SphericalHarmonic.h |only geosphere-1.5-20/geosphere/src/SphericalHarmonic1.h |only geosphere-1.5-20/geosphere/src/SphericalHarmonic2.h |only geosphere-1.5-20/geosphere/src/UTMUPS.cpp |only geosphere-1.5-20/geosphere/src/UTMUPS.h |only geosphere-1.5-20/geosphere/src/intersect.cpp |only geosphere-1.6-5/geosphere/DESCRIPTION | 10 geosphere-1.6-5/geosphere/MD5 | 172 +--- geosphere-1.6-5/geosphere/R/alongTrack.R | 80 +- geosphere-1.6-5/geosphere/R/areaPolygon.R | 48 + geosphere-1.6-5/geosphere/R/centroid.R | 4 geosphere-1.6-5/geosphere/R/dist2Line.R | 6 geosphere-1.6-5/geosphere/R/distHaversine.R | 2 geosphere-1.6-5/geosphere/R/gcIntermediate.R | 57 + geosphere-1.6-5/geosphere/R/geomedian.R | 5 geosphere-1.6-5/geosphere/R/greatCircle.R | 6 geosphere-1.6-5/geosphere/R/lengthLine.R | 14 geosphere-1.6-5/geosphere/R/makePoly.R | 32 geosphere-1.6-5/geosphere/R/plotPoly.R | 2 geosphere-1.6-5/geosphere/R/pointsToMatrix.R | 5 geosphere-1.6-5/geosphere/R/sampleAlong.R | 35 geosphere-1.6-5/geosphere/R/span.R | 31 geosphere-1.6-5/geosphere/build/partial.rdb |binary geosphere-1.6-5/geosphere/build/vignette.rds |binary geosphere-1.6-5/geosphere/inst/doc/geosphere.R | 2 geosphere-1.6-5/geosphere/inst/doc/geosphere.Rnw | 8 geosphere-1.6-5/geosphere/inst/doc/geosphere.pdf |binary geosphere-1.6-5/geosphere/man/area.Rd | 4 geosphere-1.6-5/geosphere/man/intermediate.Rd | 12 geosphere-1.6-5/geosphere/man/span.Rd | 6 geosphere-1.6-5/geosphere/src/Accumulator.cpp | 2 geosphere-1.6-5/geosphere/src/Accumulator.h | 2 geosphere-1.6-5/geosphere/src/AuxAngle.cpp |only geosphere-1.6-5/geosphere/src/AuxAngle.h |only geosphere-1.6-5/geosphere/src/AuxLatitude.cpp |only geosphere-1.6-5/geosphere/src/AuxLatitude.h |only geosphere-1.6-5/geosphere/src/Config.h | 6 geosphere-1.6-5/geosphere/src/Constants.h | 92 +- geosphere-1.6-5/geosphere/src/DAuxLatitude.cpp |only geosphere-1.6-5/geosphere/src/DAuxLatitude.h |only geosphere-1.6-5/geosphere/src/DST.cpp | 102 +- geosphere-1.6-5/geosphere/src/DST.h | 44 - geosphere-1.6-5/geosphere/src/EllipticFunction.cpp | 106 ++ geosphere-1.6-5/geosphere/src/EllipticFunction.h | 25 geosphere-1.6-5/geosphere/src/Geodesic.cpp | 56 - geosphere-1.6-5/geosphere/src/Geodesic.h | 60 + geosphere-1.6-5/geosphere/src/GeodesicExact.cpp | 32 geosphere-1.6-5/geosphere/src/GeodesicExact.h | 50 - geosphere-1.6-5/geosphere/src/GeodesicLine.cpp | 19 geosphere-1.6-5/geosphere/src/GeodesicLine.h | 54 - geosphere-1.6-5/geosphere/src/GeodesicLineExact.cpp | 7 geosphere-1.6-5/geosphere/src/GeodesicLineExact.h | 151 +-- geosphere-1.6-5/geosphere/src/Intersect.cpp |only geosphere-1.6-5/geosphere/src/Intersect.h |only geosphere-1.6-5/geosphere/src/Math.cpp | 165 ++-- geosphere-1.6-5/geosphere/src/Math.h | 100 +- geosphere-1.6-5/geosphere/src/OSGB.cpp | 8 geosphere-1.6-5/geosphere/src/OSGB.h | 52 - geosphere-1.6-5/geosphere/src/PolygonArea.cpp | 28 geosphere-1.6-5/geosphere/src/PolygonArea.h | 19 geosphere-1.6-5/geosphere/src/Rhumb.cpp | 543 ++++++-------- geosphere-1.6-5/geosphere/src/Rhumb.h | 188 +--- geosphere-1.6-5/geosphere/src/TransverseMercator.cpp | 22 geosphere-1.6-5/geosphere/src/TransverseMercator.h | 32 geosphere-1.6-5/geosphere/src/TransverseMercatorExact.cpp | 37 geosphere-1.6-5/geosphere/src/TransverseMercatorExact.h | 8 geosphere-1.6-5/geosphere/src/Utility.cpp | 6 geosphere-1.6-5/geosphere/src/Utility.h | 130 ++- geosphere-1.6-5/geosphere/src/kissfft.h | 53 + geosphere-1.6-5/geosphere/vignettes/geosphere.Rnw | 8 118 files changed, 1529 insertions(+), 1219 deletions(-)
Title: A Fast and Flexible Pipeline for Text Classification
Description: A high-level pipeline that simplifies text classification into three streamlined steps:
preprocessing, model training, and standardized prediction.
It unifies the interface for multiple algorithms (including 'glmnet', 'ranger',
'xgboost', and 'naivebayes') and memory-efficient sparse matrix vectorization
methods (Bag-of-Words, Term Frequency, TF-IDF, and Binary). Users can go from
raw text to a fully evaluated sentiment model, complete with ROC-optimized
thresholds, in just a few function calls. The resulting model artifact
automatically aligns the vocabulary of new datasets during the prediction phase,
safely appending predicted classes and probability matrices directly to the
user's original dataframe to preserve metadata.
Author: Alabhya Dahal [aut, cre]
Maintainer: Alabhya Dahal <alabhya.dahal@gmail.com>
Diff between quickSentiment versions 0.2.0 dated 2026-02-15 and 0.3.1 dated 2026-03-01
quickSentiment-0.2.0/quickSentiment/man/prediction.Rd |only quickSentiment-0.3.1/quickSentiment/DESCRIPTION | 29 - quickSentiment-0.3.1/quickSentiment/MD5 | 50 +- quickSentiment-0.3.1/quickSentiment/NAMESPACE | 12 quickSentiment-0.3.1/quickSentiment/NEWS.md |only quickSentiment-0.3.1/quickSentiment/R/BOW.R | 6 quickSentiment-0.3.1/quickSentiment/R/evaluation.R |only quickSentiment-0.3.1/quickSentiment/R/logit.R | 91 +++-- quickSentiment-0.3.1/quickSentiment/R/nb.R | 144 +++++--- quickSentiment-0.3.1/quickSentiment/R/pipeline.R | 173 ++++++---- quickSentiment-0.3.1/quickSentiment/R/pre_process.R | 61 +++ quickSentiment-0.3.1/quickSentiment/R/prediction.R | 106 ++---- quickSentiment-0.3.1/quickSentiment/R/rf.R | 154 ++++++-- quickSentiment-0.3.1/quickSentiment/R/route_prediction.R |only quickSentiment-0.3.1/quickSentiment/R/xgb.R | 92 +++-- quickSentiment-0.3.1/quickSentiment/README.md | 8 quickSentiment-0.3.1/quickSentiment/inst/CITATION |only quickSentiment-0.3.1/quickSentiment/inst/doc/introduction-to-quickSentiment.R | 19 - quickSentiment-0.3.1/quickSentiment/inst/doc/introduction-to-quickSentiment.Rmd | 33 - quickSentiment-0.3.1/quickSentiment/inst/doc/introduction-to-quickSentiment.html | 130 ++++--- quickSentiment-0.3.1/quickSentiment/man/evaluate_metrics.Rd |only quickSentiment-0.3.1/quickSentiment/man/logit_model.Rd | 19 - quickSentiment-0.3.1/quickSentiment/man/nb_model.Rd | 33 + quickSentiment-0.3.1/quickSentiment/man/pipeline.Rd | 21 - quickSentiment-0.3.1/quickSentiment/man/pre_process.Rd | 13 quickSentiment-0.3.1/quickSentiment/man/predict_sentiment.Rd |only quickSentiment-0.3.1/quickSentiment/man/qs_negations.Rd |only quickSentiment-0.3.1/quickSentiment/man/rf_model.Rd | 27 - quickSentiment-0.3.1/quickSentiment/man/xgb_model.Rd | 21 - quickSentiment-0.3.1/quickSentiment/vignettes/introduction-to-quickSentiment.Rmd | 33 - 30 files changed, 802 insertions(+), 473 deletions(-)
More information about quickSentiment at CRAN
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Title: Cluster Ordinal Data via Proportional Odds or Ordered Stereotype
Description: Biclustering, row clustering and column clustering using the proportional odds model (POM), ordered stereotype model (OSM) or binary model for ordinal categorical data. Fernández, D., Arnold, R., Pledger, S., Liu, I., & Costilla, R. (2019) <doi:10.1007/s11634-018-0324-3>.
Author: Louise McMillan [aut, cre, cph] ,
Daniel Fernandez Martinez [aut] ,
Ying Cui [aut],
Eleni Matechou [aut] ,
W. N. Venables [ctb, cph] ,
B. D. Ripley [ctb, cph]
Maintainer: Louise McMillan <louise.mcmillan@vuw.ac.nz>
Diff between clustord versions 1.3.4 dated 2025-05-29 and 2.0.0 dated 2026-03-01
clustord-1.3.4/clustord/inst/doc/intro.R |only clustord-1.3.4/clustord/inst/doc/intro.Rmd |only clustord-1.3.4/clustord/inst/doc/intro.html |only clustord-1.3.4/clustord/man/calc.SE.bicluster.Rd |only clustord-1.3.4/clustord/man/calc.cluster.comparisons.Rd |only clustord-1.3.4/clustord/man/mat2df.Rd |only clustord-1.3.4/clustord/src/rcpparma_hello_world.cpp |only clustord-1.3.4/clustord/vignettes/intro.Rmd |only clustord-1.3.4/clustord/vignettes/versions_phdcomics.png |only clustord-2.0.0/clustord/DESCRIPTION | 10 clustord-2.0.0/clustord/MD5 | 118 - clustord-2.0.0/clustord/NAMESPACE | 10 clustord-2.0.0/clustord/R/RcppExports.R | 16 clustord-2.0.0/clustord/R/clustering.R | 667 +++-- clustord-2.0.0/clustord/R/clustord-package.R | 10 clustord-2.0.0/clustord/R/em_algorithm.R | 600 ++--- clustord-2.0.0/clustord/R/generatestart.R | 749 +++--- clustord-2.0.0/clustord/R/input_validation.R | 224 + clustord-2.0.0/clustord/R/ordinalmodels.R | 195 - clustord-2.0.0/clustord/R/osm.R | 10 clustord-2.0.0/clustord/R/output_tidying.R | 501 ++++ clustord-2.0.0/clustord/R/utils.R | 112 clustord-2.0.0/clustord/README.md | 75 clustord-2.0.0/clustord/build/vignette.rds |binary clustord-2.0.0/clustord/inst/doc/RegressionwithOSM.R | 4 clustord-2.0.0/clustord/inst/doc/RegressionwithOSM.Rmd | 8 clustord-2.0.0/clustord/inst/doc/RegressionwithOSM.pdf |binary clustord-2.0.0/clustord/inst/doc/clustordAdvSettings.R | 8 clustord-2.0.0/clustord/inst/doc/clustordAdvSettings.Rmd | 26 clustord-2.0.0/clustord/inst/doc/clustordAdvSettings.pdf |binary clustord-2.0.0/clustord/inst/doc/clustordConvergence.R | 14 clustord-2.0.0/clustord/inst/doc/clustordConvergence.Rmd | 27 clustord-2.0.0/clustord/inst/doc/clustordConvergence.pdf |binary clustord-2.0.0/clustord/inst/doc/clustordOrdinalModels.pdf |binary clustord-2.0.0/clustord/inst/doc/clustordStructureSummary.Rmd | 10 clustord-2.0.0/clustord/inst/doc/clustordStructureSummary.pdf |binary clustord-2.0.0/clustord/inst/doc/clustordTutorial.R | 174 - clustord-2.0.0/clustord/inst/doc/clustordTutorial.Rmd | 246 +- clustord-2.0.0/clustord/inst/doc/clustordTutorial.pdf |binary clustord-2.0.0/clustord/inst/scripts/example_biclustering.R | 80 clustord-2.0.0/clustord/inst/scripts/example_clustering_quick.R |only clustord-2.0.0/clustord/inst/scripts/example_rowclustering.R | 88 clustord-2.0.0/clustord/inst/scripts/test_binary.R | 100 clustord-2.0.0/clustord/man/calc_SE_bicluster.Rd |only clustord-2.0.0/clustord/man/calc_cluster_comparisons.Rd |only clustord-2.0.0/clustord/man/clustord-package.Rd | 10 clustord-2.0.0/clustord/man/clustord.Rd | 356 +-- clustord-2.0.0/clustord/man/mat_to_df.Rd |only clustord-2.0.0/clustord/man/osm.Rd | 424 +-- clustord-2.0.0/clustord/man/reorder.clustord.Rd |only clustord-2.0.0/clustord/man/rerun.Rd | 38 clustord-2.0.0/clustord/src/RcppExports.cpp | 32 clustord-2.0.0/clustord/src/rcpp_likelihoods.cpp | 134 - clustord-2.0.0/clustord/tests/testthat/test_calc_likelihoods.R | 80 clustord-2.0.0/clustord/tests/testthat/test_mat2df.R | 14 clustord-2.0.0/clustord/tests/testthat/test_reorder_bi.R |only clustord-2.0.0/clustord/tests/testthat/test_reorder_col.R |only clustord-2.0.0/clustord/tests/testthat/test_reorder_row.R |only clustord-2.0.0/clustord/tests/testthat/test_system.R | 1146 +++++----- clustord-2.0.0/clustord/tests/testthat/test_system_other_constraint.R |only clustord-2.0.0/clustord/tests/testthat/test_unpack_parvec.R | 6 clustord-2.0.0/clustord/tests/testthat/test_validate_formula.R | 135 - clustord-2.0.0/clustord/tests/testthat/test_validate_inputs.R | 646 ++--- clustord-2.0.0/clustord/vignettes/RegressionwithOSM.Rmd | 8 clustord-2.0.0/clustord/vignettes/clustordAdvSettings.Rmd | 26 clustord-2.0.0/clustord/vignettes/clustordConvergence.Rmd | 27 clustord-2.0.0/clustord/vignettes/clustordStructureSummary.Rmd | 10 clustord-2.0.0/clustord/vignettes/clustordTutorial.Rmd | 246 +- clustord-2.0.0/clustord/vignettes/tutorial_fits.Rdata |binary 69 files changed, 4033 insertions(+), 3387 deletions(-)
Title: Climate Window Analysis
Description: Contains functions to detect and visualise periods of climate
sensitivity (climate windows) for a given biological response.
Please see van de Pol et al. (2016) <doi:10.1111/2041-210X.12590>
and Bailey and van de Pol (2016) <doi:10.1371/journal.pone.0167980> for details.
Author: Liam D. Bailey [aut, cre],
Martijn van de Pol [aut]
Maintainer: Liam D. Bailey <liam.bailey@liamdbailey.com>
Diff between climwin versions 1.2.32 dated 2025-08-25 and 1.2.33 dated 2026-03-01
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 18 +++++++++++++++++- build/vignette.rds |binary inst/doc/advanced_climwin.html | 9 +++++---- inst/doc/climwin.html | 9 +++++---- tests/testthat/testpvalue.R | 2 +- 7 files changed, 37 insertions(+), 19 deletions(-)
Title: Simply Caching R Objects
Description: Provides intuitive functions for caching R objects, encouraging
reproducible, restartable, and distributed R analysis. The user selects a
location to store caches, and then provides nothing more than a cache name
and instructions (R code) for how to produce the R object. Also
provides some advanced options like environment assignments, recreating or
reloading caches, and cluster compute bindings (using the 'batchtools'
package) making it flexible enough for use in large-scale data analysis
projects.
Author: VP Nagraj [aut],
Nathan Sheffield [aut, cre]
Maintainer: Nathan Sheffield <nathan@code.databio.org>
Diff between simpleCache versions 0.4.3 dated 2026-02-26 and 0.5.0 dated 2026-03-01
DESCRIPTION | 8 +- MD5 | 30 +++++----- NEWS.md | 7 ++ R/deleteCache.R | 3 - R/listCaches.R | 3 - R/simpleCache.R | 8 +- R/storeCache.R | 5 + R/utility.R | 33 ++++++++++- inst/doc/clusterCaches.Rmd | 6 +- inst/doc/clusterCaches.html | 16 ++++- inst/doc/sharingCaches.html | 6 +- inst/doc/simpleCacheIntroduction.Rmd | 26 ++++++++ inst/doc/simpleCacheIntroduction.html | 100 ++++++++++++++++++++++------------ inst/examples |only tests/testthat/test_custom_backend.R |only vignettes/clusterCaches.Rmd | 6 +- vignettes/simpleCacheIntroduction.Rmd | 26 ++++++++ 17 files changed, 214 insertions(+), 69 deletions(-)
Title: Causal Generalized Linear Models
Description: An implementation of methods for causal discovery in a structural causal model where the conditional distribution of the target node is described by a generalized linear model conditional on its causal parents.
Author: Veronica Vinciotti [aut, cre],
Ernst C. Wit [aut]
Maintainer: Veronica Vinciotti <veronica.vinciotti@unitn.it>
Diff between causalreg versions 0.1.1 dated 2026-02-27 and 0.1.2 dated 2026-03-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/cgam.R | 5 ++++- R/cglm.R | 5 ++++- man/cgam.Rd | 6 +++++- man/cglm.Rd | 6 +++++- 6 files changed, 26 insertions(+), 12 deletions(-)
Title: Autoregressive Cokriging Models for Multifidelity Codes
Description: For emulating multifidelity computer models. The major methods include univariate autoregressive cokriging and multivariate autoregressive cokriging. The autoregressive cokriging methods are implemented for both hierarchically nested design and non-nested design. For hierarchically nested design, the model parameters are estimated via standard optimization algorithms; For non-nested design, the model parameters are estimated via Monte Carlo expectation-maximization (MCEM) algorithms. In both cases, the priors are chosen such that the posterior distributions are proper. Notice that the uniform priors on range parameters in the correlation function lead to improper posteriors. This should be avoided when Bayesian analysis is adopted. The development of objective priors for autoregressive cokriging models can be found in Pulong Ma (2020) <DOI:10.1137/19M1289893>. The development of the multivariate autoregressive cokriging models with possibly non-nested design can be found in Pulon [...truncated...]
Author: Pulong Ma [aut, cre]
Maintainer: Pulong Ma <mpulong@gmail.com>
This is a re-admission after prior archival of version 0.1.2 dated 2021-12-02
Diff between ARCokrig versions 0.1.2 dated 2021-12-02 and 0.1.3 dated 2026-03-01
ARCokrig-0.1.2/ARCokrig/R/startup.R |only ARCokrig-0.1.2/ARCokrig/inst/NEWS.Rd |only ARCokrig-0.1.3/ARCokrig/DESCRIPTION | 15 +++++++-------- ARCokrig-0.1.3/ARCokrig/MD5 | 11 +++++------ ARCokrig-0.1.3/ARCokrig/inst/CITATION | 6 +++--- ARCokrig-0.1.3/ARCokrig/inst/NEWS.md |only ARCokrig-0.1.3/ARCokrig/src/Makevars | 13 ++----------- ARCokrig-0.1.3/ARCokrig/src/Makevars.win | 4 ++-- 8 files changed, 19 insertions(+), 30 deletions(-)
Title: Estimate and Simulate from Location Dependent Marked Point
Processes
Description: A suite of tools for estimating, assessing model fit, simulating from, and visualizing location dependent marked point processes characterized by regularity in the pattern.
You provide a reference marked point process, a set of raster images containing location specific covariates, and select the estimation algorithm and type of mark model.
'ldmppr' estimates the process and mark models and allows you to check the appropriateness of the model using a variety of diagnostic tools.
Once a satisfactory model fit is obtained, you can simulate from the model and visualize the results.
Documentation for the package 'ldmppr' is available in the form of a vignette.
Author: Lane Drew [aut, cre, cph] ,
Andee Kaplan [aut]
Maintainer: Lane Drew <lanetdrew@gmail.com>
Diff between ldmppr versions 1.1.1 dated 2026-01-13 and 1.1.2 dated 2026-03-01
ldmppr-1.1.1/ldmppr/man/interaction_st.Rd |only ldmppr-1.1.2/ldmppr/DESCRIPTION | 20 ldmppr-1.1.2/ldmppr/MD5 | 116 - ldmppr-1.1.2/ldmppr/NAMESPACE | 27 ldmppr-1.1.2/ldmppr/NEWS.md | 10 ldmppr-1.1.2/ldmppr/R/RcppExports.R | 87 ldmppr-1.1.2/ldmppr/R/calc_toroidal_dist.R | 2 ldmppr-1.1.2/ldmppr/R/check_model_fit.R | 562 ++++-- ldmppr-1.1.2/ldmppr/R/estimate_helpers.R | 703 +++++-- ldmppr-1.1.2/ldmppr/R/estimate_process_parameters.R | 899 +++++++--- ldmppr-1.1.2/ldmppr/R/extra.R | 1 ldmppr-1.1.2/ldmppr/R/generate_mpp.R | 29 ldmppr-1.1.2/ldmppr/R/internal_helpers.R | 361 +++- ldmppr-1.1.2/ldmppr/R/ldmppr_budgets.R |only ldmppr-1.1.2/ldmppr/R/ldmppr_budgets_S3.R |only ldmppr-1.1.2/ldmppr/R/ldmppr_grids.R |only ldmppr-1.1.2/ldmppr/R/ldmppr_grids_S3.R |only ldmppr-1.1.2/ldmppr/R/mark_model_s3.R | 125 + ldmppr-1.1.2/ldmppr/R/model_check_s3.R | 54 ldmppr-1.1.2/ldmppr/R/plot_mpp.R | 5 ldmppr-1.1.2/ldmppr/R/power_law_mapping.R | 7 ldmppr-1.1.2/ldmppr/R/predict_marks.R | 234 +- ldmppr-1.1.2/ldmppr/R/process_fit_s3.R | 136 + ldmppr-1.1.2/ldmppr/R/sim_s3.R | 60 ldmppr-1.1.2/ldmppr/R/simulate_mpp.R | 289 ++- ldmppr-1.1.2/ldmppr/R/simulate_sc.R | 45 ldmppr-1.1.2/ldmppr/R/train_mark_model.R | 472 ++++- ldmppr-1.1.2/ldmppr/R/zzz.R | 13 ldmppr-1.1.2/ldmppr/data/medium_example_data.rda |binary ldmppr-1.1.2/ldmppr/inst/doc/ldmppr_howto.R | 67 ldmppr-1.1.2/ldmppr/inst/doc/ldmppr_howto.Rmd | 74 ldmppr-1.1.2/ldmppr/inst/doc/ldmppr_howto.html | 325 ++- ldmppr-1.1.2/ldmppr/inst/extdata/Snodgrass_DEM_1m_med.tif |binary ldmppr-1.1.2/ldmppr/inst/extdata/Snodgrass_aspect_southness_1m_med.tif |binary ldmppr-1.1.2/ldmppr/inst/extdata/Snodgrass_slope_1m_med.tif |binary ldmppr-1.1.2/ldmppr/inst/extdata/Snodgrass_wetness_index_1m_med.tif |binary ldmppr-1.1.2/ldmppr/man/check_model_fit.Rd | 56 ldmppr-1.1.2/ldmppr/man/estimate_process_parameters.Rd | 225 +- ldmppr-1.1.2/ldmppr/man/full_sc_lhood.Rd | 22 ldmppr-1.1.2/ldmppr/man/full_sc_lhood_fast.Rd | 22 ldmppr-1.1.2/ldmppr/man/generate_mpp.Rd | 3 ldmppr-1.1.2/ldmppr/man/interaction_st_fast.Rd |only ldmppr-1.1.2/ldmppr/man/ldmppr-internal.Rd | 79 ldmppr-1.1.2/ldmppr/man/ldmppr-package.Rd | 1 ldmppr-1.1.2/ldmppr/man/ldmppr_budgets-class.Rd |only ldmppr-1.1.2/ldmppr/man/ldmppr_budgets.Rd |only ldmppr-1.1.2/ldmppr/man/ldmppr_fit.Rd | 10 ldmppr-1.1.2/ldmppr/man/ldmppr_grids-class.Rd |only ldmppr-1.1.2/ldmppr/man/ldmppr_grids.Rd |only ldmppr-1.1.2/ldmppr/man/ldmppr_mark_model.Rd | 52 ldmppr-1.1.2/ldmppr/man/ldmppr_sim.Rd | 11 ldmppr-1.1.2/ldmppr/man/plot_mpp.Rd | 4 ldmppr-1.1.2/ldmppr/man/predict_marks.Rd | 61 ldmppr-1.1.2/ldmppr/man/sim_spatial_sc.Rd | 10 ldmppr-1.1.2/ldmppr/man/simulate_mpp.Rd | 38 ldmppr-1.1.2/ldmppr/man/simulate_sc.Rd | 4 ldmppr-1.1.2/ldmppr/man/spat_interaction.Rd | 8 ldmppr-1.1.2/ldmppr/man/thin_st_fast.Rd |only ldmppr-1.1.2/ldmppr/man/toroidal_dist_matrix_optimized.Rd | 2 ldmppr-1.1.2/ldmppr/man/train_mark_model.Rd | 18 ldmppr-1.1.2/ldmppr/src/RcppExports.cpp | 51 ldmppr-1.1.2/ldmppr/src/self_correcting_model.cpp | 754 +++++--- ldmppr-1.1.2/ldmppr/tests/testthat/test-likelihood_parity.R |only ldmppr-1.1.2/ldmppr/tests/testthat/test-mark_model_io.R | 16 ldmppr-1.1.2/ldmppr/vignettes/ldmppr_howto.Rmd | 74 65 files changed, 4595 insertions(+), 1649 deletions(-)
Title: Database Queries Using 'data.table' Syntax
Description: Query database tables over a 'DBI' connection using 'data.table' syntax.
Attach database schemas to the search path. Automatically merge using foreign
key constraints.
Author: Kjell P. Konis [aut, cre],
Luis Rocha [ctb]
Maintainer: Kjell P. Konis <kjellk@gmail.com>
Diff between dbi.table versions 1.0.6 dated 2026-01-11 and 1.0.7 dated 2026-03-01
dbi.table-1.0.6/dbi.table/R/onLoad.R |only dbi.table-1.0.7/dbi.table/DESCRIPTION | 6 dbi.table-1.0.7/dbi.table/MD5 | 34 +-- dbi.table-1.0.7/dbi.table/NAMESPACE | 1 dbi.table-1.0.7/dbi.table/NEWS.md | 9 dbi.table-1.0.7/dbi.table/R/calls.R | 17 - dbi.table-1.0.7/dbi.table/R/catalog.R | 3 dbi.table-1.0.7/dbi.table/R/cte.R | 35 --- dbi.table-1.0.7/dbi.table/R/dbi.table.R | 8 dbi.table-1.0.7/dbi.table/R/extract.R | 8 dbi.table-1.0.7/dbi.table/R/merge.R | 6 dbi.table-1.0.7/dbi.table/R/s3_methods_sql_server.R | 2 dbi.table-1.0.7/dbi.table/R/session.R |only dbi.table-1.0.7/dbi.table/R/specials.R | 113 ++++++---- dbi.table-1.0.7/dbi.table/R/sql.join.R | 21 + dbi.table-1.0.7/dbi.table/R/write_sql.R | 2 dbi.table-1.0.7/dbi.table/inst/doc/introduction_to_dbi_table.html | 3 dbi.table-1.0.7/dbi.table/tests/testthat/test-assumptions.R | 13 - dbi.table-1.0.7/dbi.table/tests/testthat/test-regression.R | 28 ++ 19 files changed, 175 insertions(+), 134 deletions(-)
Title: Empirical Bayes Estimation and Inference
Description: Kiefer-Wolfowitz maximum likelihood estimation for mixture models
and some other density estimation and regression methods based on convex
optimization. See Koenker and Gu (2017) REBayes: An R Package for Empirical
Bayes Mixture Methods, Journal of Statistical Software, 82, 1--26,
<DOI:10.18637/jss.v082.i08>.
Author: Roger Koenker [aut, cre],
Jiaying Gu [ctb],
Ivan Mizera [ctb]
Maintainer: Roger Koenker <rkoenker@uiuc.edu>
Diff between REBayes versions 2.59 dated 2025-12-03 and 2.60 dated 2026-03-01
DESCRIPTION | 12 ++++++------ MD5 | 28 ++++++++++++++-------------- R/HodgesLehmann.R | 42 ++++++++++++++++++++++++++++++++---------- demo/HL1.R | 24 ++++++++++-------------- demo/Shakespeare.R | 4 +++- inst/ChangeLog | 6 ++++++ inst/doc/Bdecon.Rnw | 2 +- inst/doc/Bdecon.pdf |binary inst/doc/medde.pdf |binary inst/doc/rebayes.pdf |binary man/HodgesLehmann.Rd | 21 +++++++++++++++++---- vignettes/Bdecon.Rnw | 2 +- vignettes/Bdecon.bib | 22 +++++++++++----------- vignettes/medde.bib | 24 ++++++++++++------------ vignettes/rebayes.bib | 2 +- 15 files changed, 114 insertions(+), 75 deletions(-)
Title: Model-Robust Standardization for Longitudinal Cluster-Randomized
Trials
Description: Provides estimation and leave-one-cluster-out jackknife standard errors
for four longitudinal cluster-randomized trial estimands: horizontal individual
average treatment effect (h-iATE), horizontal cluster average treatment effect
(h-cATE), vertical individual average treatment effect (v-iATE), and vertical
cluster-period average treatment effect (v-cATE), using unadjusted and augmented
(model-robust standardization) estimators. The working model may be fit using
linear mixed models for continuous outcomes or generalized estimating equations
and generalized linear mixed models for binary outcomes. Period inclusion for
aggregation is determined automatically: only periods with both treated and
control clusters are included in the construction of the marginal means and
treatment effect contrasts. See Fang et al. (2025) <doi:10.48550/arXiv.2507.17190>.
Author: Xi Fang [aut, cre],
Fan Li [aut]
Maintainer: Xi Fang <x.fang@yale.edu>
Diff between MRStdLCRT versions 0.1.0 dated 2026-01-15 and 0.1.1 dated 2026-03-01
MRStdLCRT-0.1.0/MRStdLCRT/inst |only MRStdLCRT-0.1.1/MRStdLCRT/DESCRIPTION | 8 MRStdLCRT-0.1.1/MRStdLCRT/LICENSE | 2 MRStdLCRT-0.1.1/MRStdLCRT/MD5 | 23 MRStdLCRT-0.1.1/MRStdLCRT/NAMESPACE | 1 MRStdLCRT-0.1.1/MRStdLCRT/R/mrstdlcrt.R | 2180 +++++++++++++++---------- MRStdLCRT-0.1.1/MRStdLCRT/R/sw_b.R | 44 MRStdLCRT-0.1.1/MRStdLCRT/R/sw_c.R | 44 MRStdLCRT-0.1.1/MRStdLCRT/R/xo_b.R | 42 MRStdLCRT-0.1.1/MRStdLCRT/R/xo_c.R | 42 MRStdLCRT-0.1.1/MRStdLCRT/man/mrstdlcrt_fit.Rd | 117 + MRStdLCRT-0.1.1/MRStdLCRT/man/plot.mrs.Rd | 24 MRStdLCRT-0.1.1/MRStdLCRT/man/summary.mrs.Rd | 39 13 files changed, 1578 insertions(+), 988 deletions(-)
Title: Latin Hypercube Samples
Description: Provides a number of methods for creating and augmenting Latin Hypercube Samples and Orthogonal Array Latin Hypercube Samples.
Author: Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between lhs versions 1.2.0 dated 2024-06-30 and 1.2.1 dated 2026-03-01
ChangeLog | 2 DESCRIPTION | 8 MD5 | 138 +++---- NEWS | 272 +++++++------- R/augmentLHS.R | 196 +++++----- R/correlatedLHS.R | 244 ++++++------ R/createOA.R | 556 ++++++++++++++--------------- R/create_oalhs.R | 44 +- R/geneticLHS.R | 142 +++---- R/get_library_versions.R | 30 - R/improvedLHS.r | 120 +++--- R/lhs.R | 12 R/maximinLHS.R | 356 +++++++++--------- R/oa_to_oalhs.R | 62 +-- R/optAugmentLHS.R | 238 ++++++------ R/optSeededLHS.R | 118 +++--- R/optimumLHS.R | 122 +++--- R/quantile_transforms.R | 202 +++++----- R/randomLHS.r | 50 +- R/runifint.r | 38 - build/vignette.rds |binary inst/doc/augment_lhs.Rmd | 330 ++++++++--------- inst/doc/augment_lhs.html | 15 inst/doc/correlated_lhs.Rmd | 332 ++++++++--------- inst/doc/correlated_lhs.html | 115 +++-- inst/doc/lhs_basics.Rmd | 444 +++++++++++------------ inst/doc/lhs_basics.html | 17 inst/doc/lhs_faq.Rmd | 444 +++++++++++------------ inst/doc/lhs_faq.html | 259 ++++++------- man/augmentLHS.Rd | 124 +++--- man/createAddelKemp.Rd | 90 ++-- man/createAddelKemp3.Rd | 94 ++-- man/createAddelKempN.Rd | 88 ++-- man/createBose.Rd | 90 ++-- man/createBoseBush.Rd | 90 ++-- man/createBoseBushl.Rd | 96 ++--- man/createBush.Rd | 90 ++-- man/createBusht.Rd | 98 ++--- man/create_oalhs.Rd | 56 +- man/geneticLHS.Rd | 182 ++++----- man/improvedLHS.Rd | 126 +++--- man/lhs-package.Rd | 46 +- man/maximinLHS.Rd | 182 ++++----- man/oa_to_oalhs.Rd | 50 +- man/optAugmentLHS.Rd | 92 ++-- man/optSeededLHS.Rd | 96 ++--- man/optimumLHS.Rd | 134 +++--- man/randomLHS.Rd | 60 +-- src/oa_r.cpp | 2 tests/testthat/helper-lhs.R | 102 ++--- tests/testthat/test-augmentlhs.R | 94 ++-- tests/testthat/test-correlatedLHS.R | 202 +++++----- tests/testthat/test-create_oalhs.R | 92 ++-- tests/testthat/test-createoa.R | 420 ++++++++++----------- tests/testthat/test-galois_field.R | 398 ++++++++++---------- tests/testthat/test-geneticlhs.R | 94 ++-- tests/testthat/test-get_library_versions.R | 20 - tests/testthat/test-improvedlhs.r | 84 ++-- tests/testthat/test-maximinlhs.R | 136 +++---- tests/testthat/test-oa_to_oalhs.R | 158 ++++---- tests/testthat/test-optaugmentlhs.R | 66 +-- tests/testthat/test-optimumlhs.R | 150 +++---- tests/testthat/test-optseededlhs.R | 80 ++-- tests/testthat/test-quantile_transforms.R | 142 +++---- tests/testthat/test-randomlhs.r | 172 ++++---- vignettes/VignetteCommonCode.R | 294 +++++++-------- vignettes/augment_lhs.Rmd | 330 ++++++++--------- vignettes/correlated_lhs.Rmd | 332 ++++++++--------- vignettes/lhs_basics.Rmd | 444 +++++++++++------------ vignettes/lhs_faq.Rmd | 444 +++++++++++------------ 70 files changed, 5527 insertions(+), 5519 deletions(-)
Title: Model BIC Posterior Probability
Description: Fits the neighboring models of a fitted
structural equation model and assesses the model
uncertainty of the fitted model based on BIC posterior
probabilities (BPP), using the method presented in
Wu, Cheung, and Leung (2020)
<doi:10.1080/00273171.2019.1574546>. See
Pesigan, Cheung, Wu, Chang, and Leung (2026)
<doi:10.3758/s13428-025-02921-x> for an introduction to
the package.
Author: Shu Fai Cheung [aut, cre] ,
Huiping Wu [aut],
Shing On Leung [aut] ,
Ivan Jacob Agaloos Pesigan [ctb]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between modelbpp versions 0.1.6 dated 2025-09-24 and 0.2.0 dated 2026-03-01
DESCRIPTION | 13 +- MD5 | 53 +++++---- NEWS.md | 50 ++++++++ R/get_add.R | 158 +++++++++++++++++++++++---- R/get_drop.R | 50 +++++++- R/helpers1.R | 88 ++++++++++++++- R/indicator_helpers.R |only R/model_set.R | 79 ++++++++----- R/print.model_set.R | 7 - README.md | 32 +++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/doc/modelbpp.Rmd | 4 inst/doc/modelbpp.html | 14 +- inst/tinytest/test_cross_add.R |only inst/tinytest/test_cross_drop.R |only inst/tinytest/test_exclude_xy_indicators.R |only inst/tinytest/test_must_not_add.R |only inst/tinytest/test_must_not_add_lav_xy_cov.R |only inst/tinytest/test_no_convergence.R | 1 inst/tinytest/test_post_check_failed.R | 1 man/get_add.Rd | 32 +++++ man/get_drop.Rd | 14 ++ man/model_set.Rd | 59 +++++++++- man/modelbpp-package.Rd | 2 vignettes/graph1-1.png |binary vignettes/graph1_df2-1.png |binary vignettes/modelbpp.Rmd | 4 vignettes/out1_no_m1_x-1.png |binary vignettes/out1_prior-1.png |binary 31 files changed, 545 insertions(+), 116 deletions(-)
Title: Cluster Extension for 'mlr3'
Description: Extends the 'mlr3' package with cluster analysis.
Author: Maximilian Muecke [aut, cre] ,
Damir Pulatov [aut],
Michel Lang [aut] ,
Marc Becker [ctb]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between mlr3cluster versions 0.2.0 dated 2026-02-04 and 0.3.0 dated 2026-03-01
mlr3cluster-0.2.0/mlr3cluster/tests/testthat/helper_mlr3.R |only mlr3cluster-0.3.0/mlr3cluster/DESCRIPTION | 38 +- mlr3cluster-0.3.0/mlr3cluster/MD5 | 174 +++++----- mlr3cluster-0.3.0/mlr3cluster/NAMESPACE | 3 mlr3cluster-0.3.0/mlr3cluster/NEWS.md | 12 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClust.R | 2 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustAffinityPropagation.R | 4 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustAgnes.R | 3 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustCLARA.R |only mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustDBSCANfpc.R | 2 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustDiana.R | 3 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustFanny.R | 2 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustFarthestFirst.R | 2 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustHclust.R | 7 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustKKMeans.R | 25 - mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustKProto.R |only mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustMeanShift.R | 4 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustPAM.R | 4 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustProtoclust.R | 10 mlr3cluster-0.3.0/mlr3cluster/R/LearnerClustSpectral.R |only mlr3cluster-0.3.0/mlr3cluster/R/MeasureClustInternal.R | 2 mlr3cluster-0.3.0/mlr3cluster/R/PredictionClust.R | 10 mlr3cluster-0.3.0/mlr3cluster/R/as_prediction_clust.R | 47 +- mlr3cluster-0.3.0/mlr3cluster/R/bibentries.R | 17 mlr3cluster-0.3.0/mlr3cluster/README.md | 3 mlr3cluster-0.3.0/mlr3cluster/man/LearnerClust.Rd | 2 mlr3cluster-0.3.0/mlr3cluster/man/MeasureClust.Rd | 2 mlr3cluster-0.3.0/mlr3cluster/man/PredictionClust.Rd | 8 mlr3cluster-0.3.0/mlr3cluster/man/as_prediction_clust.Rd | 37 +- mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.MBatchKMeans.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.SimpleKMeans.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.agnes.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.ap.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.bico.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.birch.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.clara.Rd |only mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.cmeans.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.cobweb.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.dbscan.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.dbscan_fpc.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.diana.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.em.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.fanny.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.featureless.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.ff.Rd | 17 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.hclust.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.hdbscan.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.kkmeans.Rd | 7 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.kmeans.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.kproto.Rd |only mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.mclust.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.meanshift.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.optics.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.pam.Rd | 3 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.protoclust.Rd | 6 mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.specc.Rd |only mlr3cluster-0.3.0/mlr3cluster/man/mlr_learners_clust.xmeans.Rd | 5 mlr3cluster-0.3.0/mlr3cluster/man/mlr_measures_clust.ch.Rd | 4 mlr3cluster-0.3.0/mlr3cluster/man/mlr_measures_clust.dunn.Rd | 4 mlr3cluster-0.3.0/mlr3cluster/man/mlr_measures_clust.silhouette.Rd | 6 mlr3cluster-0.3.0/mlr3cluster/man/mlr_measures_clust.wss.Rd | 4 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/helper.R | 20 - mlr3cluster-0.3.0/mlr3cluster/tests/testthat/helper_expectations.R | 18 - mlr3cluster-0.3.0/mlr3cluster/tests/testthat/setup.R |only mlr3cluster-0.3.0/mlr3cluster/tests/testthat/teardown.R |only mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_LearnerClust.R | 2 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_agnes.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_ap.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_bico.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_birch.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_clara.R |only mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_cmeans.R | 12 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_cobweb.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_dbscan.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_dbscan_fpc.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_diana.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_em.R | 12 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_fanny.R | 12 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_featureless.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_ff.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_hclust.R | 12 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_hdbscan.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_kkmeans.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_kmeans.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_kproto.R |only mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_mbatchkmeans.R | 17 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_mclust.R | 12 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_meanshift.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_optics.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_pam.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_protoclust.R | 14 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_simplekmeans.R | 9 mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_spectral.R |only mlr3cluster-0.3.0/mlr3cluster/tests/testthat/test_mlr_learners_clust_xmeans.R | 9 94 files changed, 398 insertions(+), 434 deletions(-)
Title: Tools for Managing Imaging FlowCytobot (IFCB) Data
Description: A comprehensive suite of tools for managing, processing, and
analyzing data from the IFCB. I R FlowCytobot ('iRfcb') supports
quality control, geospatial analysis, and preparation of IFCB data for
publication in databases like <https://www.gbif.org>,
<https://www.obis.org>, <https://emodnet.ec.europa.eu/en>,
<https://shark.smhi.se/en/>, and <https://www.ecotaxa.org>. The package
integrates with the MATLAB 'ifcb-analysis' tool, which is described in
Sosik and Olson (2007) <doi:10.4319/lom.2007.5.204>, and provides
features for working with raw, manually classified, and machine
learning–classified image datasets. Key functionalities include image
extraction, particle size distribution analysis, taxonomic data
handling, and biomass concentration calculations, essential for
plankton research.
Author: Anders Torstensson [aut, cre] ,
Kendra Hayashi [ctb] ,
Jamie Enslein [ctb],
Raphael Kudela [ctb] ,
Alle Lie [ctb] ,
Jayme Smith [ctb] ,
DTO-BioFlow [fnd] ,
SBDI [fnd]
Maintainer: Anders Torstensson <anders.torstensson@smhi.se>
Diff between iRfcb versions 0.8.0 dated 2026-02-27 and 0.8.1 dated 2026-03-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/ifcb_helper_functions.R | 25 +++++++++++++++---------- inst/CITATION | 4 ++-- inst/doc/introduction.html | 4 ++-- 6 files changed, 33 insertions(+), 22 deletions(-)
Title: Utilities for Fude Polygon
Description: Provides utilities to facilitate handling of Fude Polygon data
downloadable from the Ministry of Agriculture, Forestry and Fisheries
website <https://open.fude.maff.go.jp>.
Author: Takeshi Nishimura [aut, cph, cre]
Maintainer: Takeshi Nishimura <takenishi@gmail.com>
Diff between fude versions 0.3.7 dated 2024-12-22 and 0.4.0 dated 2026-03-01
fude-0.3.7/fude/data/community_code_table.rda |only fude-0.3.7/fude/man/community_code_table.Rd |only fude-0.4.0/fude/DESCRIPTION | 18 fude-0.4.0/fude/MD5 | 68 +- fude-0.4.0/fude/NAMESPACE | 1 fude-0.4.0/fude/NEWS.md | 9 fude-0.4.0/fude/R/bind_fude.R | 86 +- fude-0.4.0/fude/R/cite_fude.R | 77 +- fude-0.4.0/fude/R/combine_fude.R | 147 ++-- fude-0.4.0/fude/R/data.R | 63 +- fude-0.4.0/fude/R/extract_boundary.R | 400 +++++++------ fude-0.4.0/fude/R/extract_fude.R | 154 +++-- fude-0.4.0/fude/R/get_boundary.R | 299 +++++++-- fude-0.4.0/fude/R/ls_fude.R | 62 +- fude-0.4.0/fude/R/read_fude.R | 217 ++++--- fude-0.4.0/fude/R/read_ikasudb.R |only fude-0.4.0/fude/R/rename_fude.R | 34 - fude-0.4.0/fude/R/shiny_fude.R | 169 +++-- fude-0.4.0/fude/README.md | 184 +++-- fude-0.4.0/fude/data/city_code_table.rda |only fude-0.4.0/fude/data/kcity_code_table.rda |only fude-0.4.0/fude/data/rcom_code_table.rda |only fude-0.4.0/fude/inst/extdata/castle.zip |binary fude-0.4.0/fude/man/bind_fude.Rd | 4 fude-0.4.0/fude/man/cite_fude.Rd | 7 fude-0.4.0/fude/man/city_code_table.Rd |only fude-0.4.0/fude/man/combine_fude.Rd | 28 fude-0.4.0/fude/man/extract_boundary.Rd | 29 fude-0.4.0/fude/man/extract_fude.Rd | 30 fude-0.4.0/fude/man/figures/README-gogoshima-1.png |binary fude-0.4.0/fude/man/figures/README-gogoshimafgb-1.png |binary fude-0.4.0/fude/man/figures/README-nosplit_gogoshima-1.png |binary fude-0.4.0/fude/man/get_boundary.Rd | 31 - fude-0.4.0/fude/man/kcity_code_table.Rd |only fude-0.4.0/fude/man/ls_fude.Rd | 6 fude-0.4.0/fude/man/rcom_code_table.Rd |only fude-0.4.0/fude/man/read_fude.Rd | 39 - fude-0.4.0/fude/man/read_ikasudb.Rd |only fude-0.4.0/fude/man/rename_fude.Rd | 8 fude-0.4.0/fude/man/shiny_fude.Rd | 8 40 files changed, 1352 insertions(+), 826 deletions(-)
Title: Cayley Graph Analysis for Permutation Puzzles
Description: Implements algorithms for analyzing Cayley graphs of permutation groups,
with a focus on the TopSpin puzzle and similar permutation-based combinatorial
puzzles. Provides methods for cycle detection, state space exploration,
bidirectional BFS pathfinding, and finding optimal operation sequences
in permutation groups generated by shift and reverse operations.
Includes C++ implementations of core operations via 'Rcpp' for performance.
Optional GPU acceleration via 'ggmlR' Vulkan backend for batch distance
calculations and parallel state transformations.
Author: Yuri Baramykov [aut, cre]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between cayleyR versions 0.1.0 dated 2025-11-25 and 0.2.1 dated 2026-03-01
cayleyR-0.1.0/cayleyR/R/apply_operations.R |only cayleyR-0.1.0/cayleyR/R/reverse_prefix.R |only cayleyR-0.1.0/cayleyR/R/shift_left.R |only cayleyR-0.1.0/cayleyR/R/shift_right.R |only cayleyR-0.1.0/cayleyR/build |only cayleyR-0.1.0/cayleyR/inst/doc |only cayleyR-0.1.0/cayleyR/vignettes |only cayleyR-0.2.1/cayleyR/DESCRIPTION | 26 - cayleyR-0.2.1/cayleyR/MD5 | 128 +++++- cayleyR-0.2.1/cayleyR/NAMESPACE | 37 + cayleyR-0.2.1/cayleyR/NEWS.md | 38 ++ cayleyR-0.2.1/cayleyR/R/RcppExports.R |only cayleyR-0.2.1/cayleyR/R/analyze_combinations.R |only cayleyR-0.2.1/cayleyR/R/basic_ops_doc.R |only cayleyR-0.2.1/cayleyR/R/bidirectional_bfs.R |only cayleyR-0.2.1/cayleyR/R/cayleyR-package.R | 78 ++-- cayleyR-0.2.1/cayleyR/R/celestial.R |only cayleyR-0.2.1/cayleyR/R/find_best_random_combinations.R | 101 +---- cayleyR-0.2.1/cayleyR/R/find_combination_in_states.R |only cayleyR-0.2.1/cayleyR/R/find_path_bfs.R |only cayleyR-0.2.1/cayleyR/R/find_path_iterative.R |only cayleyR-0.2.1/cayleyR/R/get_reachable_states.R | 104 +++-- cayleyR-0.2.1/cayleyR/R/get_reachable_states_light.R | 45 -- cayleyR-0.2.1/cayleyR/R/gpu.R |only cayleyR-0.2.1/cayleyR/R/path_utils.R |only cayleyR-0.2.1/cayleyR/R/reconstruct_path.R |only cayleyR-0.2.1/cayleyR/R/short_path_bfs.R |only cayleyR-0.2.1/cayleyR/R/sparse_bfs.R |only cayleyR-0.2.1/cayleyR/R/state_indexing.R |only cayleyR-0.2.1/cayleyR/R/state_processing.R |only cayleyR-0.2.1/cayleyR/R/state_utils.R |only cayleyR-0.2.1/cayleyR/README.md | 186 ++++++---- cayleyR-0.2.1/cayleyR/inst/examples |only cayleyR-0.2.1/cayleyR/man/add_state_keys.Rd |only cayleyR-0.2.1/cayleyR/man/analyze_top_combinations.Rd |only cayleyR-0.2.1/cayleyR/man/apply_operations.Rd | 39 -- cayleyR-0.2.1/cayleyR/man/apply_operations_batch_gpu.Rd |only cayleyR-0.2.1/cayleyR/man/bidirectional_bfs.Rd |only cayleyR-0.2.1/cayleyR/man/breakpoint_distance.Rd |only cayleyR-0.2.1/cayleyR/man/build_permutation_matrix.Rd |only cayleyR-0.2.1/cayleyR/man/calculate_angular_distance_z.Rd |only cayleyR-0.2.1/cayleyR/man/calculate_differences.Rd |only cayleyR-0.2.1/cayleyR/man/calculate_differences_gpu.Rd |only cayleyR-0.2.1/cayleyR/man/calculate_midpoint_z.Rd |only cayleyR-0.2.1/cayleyR/man/cayleyR-package.Rd | 67 +-- cayleyR-0.2.1/cayleyR/man/cayley_gpu_available.Rd |only cayleyR-0.2.1/cayleyR/man/cayley_gpu_free.Rd |only cayleyR-0.2.1/cayleyR/man/cayley_gpu_init.Rd |only cayleyR-0.2.1/cayleyR/man/cayley_gpu_status.Rd |only cayleyR-0.2.1/cayleyR/man/check_duplicates.Rd |only cayleyR-0.2.1/cayleyR/man/compose_permutation_matrix.Rd |only cayleyR-0.2.1/cayleyR/man/convert_LRX_to_celestial.Rd |only cayleyR-0.2.1/cayleyR/man/convert_digits.Rd |only cayleyR-0.2.1/cayleyR/man/create_hash_index.Rd |only cayleyR-0.2.1/cayleyR/man/dot-manhattan_distance_matrix_gpu_batch.Rd |only cayleyR-0.2.1/cayleyR/man/dot-setup_gpu.Rd |only cayleyR-0.2.1/cayleyR/man/filter_middle_states.Rd |only cayleyR-0.2.1/cayleyR/man/find_best_match_state.Rd |only cayleyR-0.2.1/cayleyR/man/find_best_random_combinations.Rd | 34 - cayleyR-0.2.1/cayleyR/man/find_closest_to_coords.Rd |only cayleyR-0.2.1/cayleyR/man/find_combination_in_states.Rd |only cayleyR-0.2.1/cayleyR/man/find_path_bfs.Rd |only cayleyR-0.2.1/cayleyR/man/find_path_iterative.Rd |only cayleyR-0.2.1/cayleyR/man/generate_state.Rd |only cayleyR-0.2.1/cayleyR/man/generate_unique_states_df.Rd |only cayleyR-0.2.1/cayleyR/man/get_reachable_states.Rd | 23 - cayleyR-0.2.1/cayleyR/man/get_reachable_states_light.Rd | 11 cayleyR-0.2.1/cayleyR/man/invert_path.Rd |only cayleyR-0.2.1/cayleyR/man/manhattan_distance.Rd |only cayleyR-0.2.1/cayleyR/man/manhattan_distance_matrix_gpu.Rd |only cayleyR-0.2.1/cayleyR/man/process_final_intersection.Rd |only cayleyR-0.2.1/cayleyR/man/process_intermediate_intersection.Rd |only cayleyR-0.2.1/cayleyR/man/process_start_intersection.Rd |only cayleyR-0.2.1/cayleyR/man/reconstruct_bfs_path.Rd |only cayleyR-0.2.1/cayleyR/man/reconstruct_full_path.Rd |only cayleyR-0.2.1/cayleyR/man/reverse_prefix.Rd | 31 - cayleyR-0.2.1/cayleyR/man/reverse_prefix_simple.Rd |only cayleyR-0.2.1/cayleyR/man/save_bridge_states.Rd |only cayleyR-0.2.1/cayleyR/man/select_new_state.Rd |only cayleyR-0.2.1/cayleyR/man/select_unique.Rd |only cayleyR-0.2.1/cayleyR/man/shift_left.Rd | 29 - cayleyR-0.2.1/cayleyR/man/shift_left_simple.Rd |only cayleyR-0.2.1/cayleyR/man/shift_right.Rd | 25 - cayleyR-0.2.1/cayleyR/man/shift_right_simple.Rd |only cayleyR-0.2.1/cayleyR/man/short_path_bfs.Rd |only cayleyR-0.2.1/cayleyR/man/short_position.Rd |only cayleyR-0.2.1/cayleyR/man/sparse_bfs.Rd |only cayleyR-0.2.1/cayleyR/man/validate_and_simplify_path.Rd |only cayleyR-0.2.1/cayleyR/src |only cayleyR-0.2.1/cayleyR/tests |only 90 files changed, 565 insertions(+), 437 deletions(-)
Title: Digitization of Phytosociological Relevés
Description: Simple and fast tool for transforming phytosociological
vegetation data into digital form for the following analysis.
Danihelka, Chrtek, and Kaplan (2012, ISSN:00327786).
Hennekens, and Schaminée (2001) <doi:10.2307/3237010>.
Tichý (2002) <doi:10.1111/j.1654-1103.2002.tb02069.x>.
Wickham, François, Henry, Müller (2022) <https://CRAN.R-project.org/package=dplyr>.
Author: Premysl Kral [aut, cre] ,
Jan Douda [aut]
Maintainer: Premysl Kral <kralp@fzp.czu.cz>
Diff between Rveg versions 0.1.6 dated 2024-11-22 and 0.1.8 dated 2026-03-01
Rveg-0.1.6/Rveg/R/RvegMERGE.r |only Rveg-0.1.6/Rveg/R/createTABLE.R |only Rveg-0.1.6/Rveg/inst/extdata/DANIHELKA2012rko.txt |only Rveg-0.1.6/Rveg/inst/extdata/example_dbHEAD.csv |only Rveg-0.1.6/Rveg/inst/extdata/example_dbREL.csv |only Rveg-0.1.6/Rveg/inst/extdata/tvexport.csv |only Rveg-0.1.8/Rveg/DESCRIPTION | 15 Rveg-0.1.8/Rveg/MD5 | 65 Rveg-0.1.8/Rveg/NAMESPACE | 10 Rveg-0.1.8/Rveg/NEWS.md |only Rveg-0.1.8/Rveg/R/CreateChecklist.R | 469 Rveg-0.1.8/Rveg/R/Rveg-package.R | 9 Rveg-0.1.8/Rveg/R/RvegCheck.R | 153 Rveg-0.1.8/Rveg/R/RvegCombine.R | 91 Rveg-0.1.8/Rveg/R/RvegLoad.R | 95 Rveg-0.1.8/Rveg/R/RvegMerge.r |only Rveg-0.1.8/Rveg/R/RvegToJuice.R | 829 - Rveg-0.1.8/Rveg/R/RvegUtils.R |only Rveg-0.1.8/Rveg/R/addReleve.R | 793 - Rveg-0.1.8/Rveg/build/vignette.rds |binary Rveg-0.1.8/Rveg/inst/doc/Rveg.pdf |binary Rveg-0.1.8/Rveg/inst/extdata/ExampleDB |only Rveg-0.1.8/Rveg/inst/extdata/RvChecklist |only Rveg-0.1.8/Rveg/inst/extdata/SpeciesList.txt |11133 ++++++++++++++++++++- Rveg-0.1.8/Rveg/inst/extdata/SpeciesListKaplan.txt |only Rveg-0.1.8/Rveg/inst/extdata/TvChecklist |only Rveg-0.1.8/Rveg/man/CreateChecklist.Rd | 54 Rveg-0.1.8/Rveg/man/Rveg-package.Rd | 4 Rveg-0.1.8/Rveg/man/RvegCheck.Rd | 52 Rveg-0.1.8/Rveg/man/RvegCombine.Rd | 40 Rveg-0.1.8/Rveg/man/RvegLoad.Rd | 40 Rveg-0.1.8/Rveg/man/RvegMerge.Rd | 51 Rveg-0.1.8/Rveg/man/RvegToJuice.Rd | 45 Rveg-0.1.8/Rveg/man/RvegToTv.Rd | 49 Rveg-0.1.8/Rveg/man/TvToRveg.Rd | 46 Rveg-0.1.8/Rveg/man/addReleve.Rd | 49 36 files changed, 12810 insertions(+), 1282 deletions(-)
Title: Tools for 2D and 3D Plots of Single and Multi-Objective
Linear/Integer Programming Models
Description: Make 2D and 3D plots of linear programming (LP),
integer linear programming (ILP), or mixed integer linear programming (MILP) models
with up to three objectives. Plots of both the solution and criterion space are possible.
For instance the non-dominated (Pareto) set for bi-objective LP/ILP/MILP programming models
(see vignettes for an overview). The package also contains an function for checking if a point
is inside the convex hull.
Author: Lars Relund Nielsen [aut, cre]
Maintainer: Lars Relund Nielsen <lars@relund.dk>
Diff between gMOIP versions 1.5.5 dated 2025-06-25 and 1.5.6 dated 2026-03-01
DESCRIPTION | 10 +++--- MD5 | 20 ++++++------- NEWS.md | 4 ++ R/package_doc.R | 3 ++ build/vignette.rds |binary inst/doc/bi-objective_2x.html | 39 +++++++++++++------------- inst/doc/bi-objective_3x_ex1.html | 57 +++++++++++++++++++------------------- inst/doc/intro.html | 49 ++++++++++++++++---------------- inst/doc/polytope_2d.html | 17 ++++++----- inst/doc/polytope_3d_ex1.html | 53 ++++++++++++++++++----------------- inst/doc/tri-objective.html | 33 +++++++++++----------- 11 files changed, 149 insertions(+), 136 deletions(-)
Title: Quadratic Programming Solver using the 'OSQP' Library
Description: Provides bindings to the 'OSQP' solver. The 'OSQP' solver is a numerical optimization package for solving convex quadratic programs written in 'C' and based on the alternating direction method of multipliers. See <doi:10.48550/arXiv.1711.08013> for details.
Author: Bartolomeo Stellato [aut, ctb, cph],
Goran Banjac [aut, ctb, cph],
Paul Goulart [aut, ctb, cph],
Stephen Boyd [aut, ctb, cph],
Eric Anderson [ctb],
Vineet Bansal [aut, ctb],
Balasubramanian Narasimhan [cre, aut]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between osqp versions 0.6.3.3 dated 2024-06-08 and 1.0.0 dated 2026-03-01
osqp-0.6.3.3/osqp/src/Makevars.win |only osqp-0.6.3.3/osqp/src/osqp_sources/ROADMAP.md |only osqp-0.6.3.3/osqp/src/osqp_sources/configure/cmake/FindPythonModule.cmake |only osqp-0.6.3.3/osqp/src/osqp_sources/include/auxil.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/constants.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/cs.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/ctrlc.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/error.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/glob_opts.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/kkt.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/lin_alg.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/lin_sys.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/osqp.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/polish.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/proj.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/scaling.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/types.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/util.h |only osqp-0.6.3.3/osqp/src/osqp_sources/include/version.h |only osqp-0.6.3.3/osqp/src/osqp_sources/lin_sys |only osqp-0.6.3.3/osqp/src/osqp_sources/src/cs.c |only osqp-0.6.3.3/osqp/src/osqp_sources/src/ctrlc.c |only osqp-0.6.3.3/osqp/src/osqp_sources/src/kkt.c |only osqp-0.6.3.3/osqp/src/osqp_sources/src/lin_alg.c |only osqp-0.6.3.3/osqp/src/osqp_sources/src/lin_sys.c |only osqp-0.6.3.3/osqp/src/osqp_sources/src/osqp.c |only osqp-0.6.3.3/osqp/src/osqp_sources/src/proj.c |only osqp-1.0.0/osqp/DESCRIPTION | 23 osqp-1.0.0/osqp/MD5 | 276 +- osqp-1.0.0/osqp/NAMESPACE | 7 osqp-1.0.0/osqp/NEWS.md | 26 osqp-1.0.0/osqp/R/RcppExports.R | 4 osqp-1.0.0/osqp/R/osqp-package.R | 1 osqp-1.0.0/osqp/R/osqp.R | 254 + osqp-1.0.0/osqp/R/params.R | 70 osqp-1.0.0/osqp/R/solve.R | 2 osqp-1.0.0/osqp/README.md | 2 osqp-1.0.0/osqp/build |only osqp-1.0.0/osqp/cleanup |only osqp-1.0.0/osqp/configure |only osqp-1.0.0/osqp/inst/doc |only osqp-1.0.0/osqp/man/OSQP_Model.Rd |only osqp-1.0.0/osqp/man/figures |only osqp-1.0.0/osqp/man/osqp.Rd | 31 osqp-1.0.0/osqp/man/osqpSettings.Rd | 51 osqp-1.0.0/osqp/src/Makevars | 18 osqp-1.0.0/osqp/src/RcppExports.cpp | 11 osqp-1.0.0/osqp/src/osqp/Makefile | 145 - osqp-1.0.0/osqp/src/osqp_configure_R.h | 57 osqp-1.0.0/osqp/src/osqp_solve_interface.cpp | 613 ++-- osqp-1.0.0/osqp/src/osqp_sources/CHANGELOG.md | 26 osqp-1.0.0/osqp/src/osqp_sources/CMakeLists.txt | 913 +++--- osqp-1.0.0/osqp/src/osqp_sources/CMakePresets.json |only osqp-1.0.0/osqp/src/osqp_sources/README.md | 3 osqp-1.0.0/osqp/src/osqp_sources/algebra |only osqp-1.0.0/osqp/src/osqp_sources/configure/Makefile.emosqp |only osqp-1.0.0/osqp/src/osqp_sources/configure/cmake/FindITTAPI.cmake |only osqp-1.0.0/osqp/src/osqp_sources/configure/cmake/FindR.cmake | 2 osqp-1.0.0/osqp/src/osqp_sources/configure/cmake/FindROCTX.cmake |only osqp-1.0.0/osqp/src/osqp_sources/configure/cmake/Utils.cmake | 93 osqp-1.0.0/osqp/src/osqp_sources/configure/cmake/osqp-config.cmake.in |only osqp-1.0.0/osqp/src/osqp_sources/configure/osqp_configure.h.in | 59 osqp-1.0.0/osqp/src/osqp_sources/examples/osqp_codegen_demo.c |only osqp-1.0.0/osqp/src/osqp_sources/examples/osqp_demo.c | 250 + osqp-1.0.0/osqp/src/osqp_sources/examples/osqp_simple_demo.c |only osqp-1.0.0/osqp/src/osqp_sources/examples/problems |only osqp-1.0.0/osqp/src/osqp_sources/include/CMakeLists.txt | 123 osqp-1.0.0/osqp/src/osqp_sources/include/private |only osqp-1.0.0/osqp/src/osqp_sources/include/public |only osqp-1.0.0/osqp/src/osqp_sources/src/CMakeLists.txt | 141 - osqp-1.0.0/osqp/src/osqp_sources/src/auxil.c | 1338 +++++----- osqp-1.0.0/osqp/src/osqp_sources/src/codegen.c |only osqp-1.0.0/osqp/src/osqp_sources/src/derivative.c |only osqp-1.0.0/osqp/src/osqp_sources/src/error.c | 38 osqp-1.0.0/osqp/src/osqp_sources/src/interrupt_unix.c |only osqp-1.0.0/osqp/src/osqp_sources/src/interrupt_windows.c |only osqp-1.0.0/osqp/src/osqp_sources/src/osqp_api.c |only osqp-1.0.0/osqp/src/osqp_sources/src/polish.c | 583 ++-- osqp-1.0.0/osqp/src/osqp_sources/src/profilers.c |only osqp-1.0.0/osqp/src/osqp_sources/src/profilers_impl.c |only osqp-1.0.0/osqp/src/osqp_sources/src/profilers_itt.c |only osqp-1.0.0/osqp/src/osqp_sources/src/profilers_nvtx.c |only osqp-1.0.0/osqp/src/osqp_sources/src/profilers_omnitrace.c |only osqp-1.0.0/osqp/src/osqp_sources/src/profilers_roctx.c |only osqp-1.0.0/osqp/src/osqp_sources/src/profilers_terminal.c |only osqp-1.0.0/osqp/src/osqp_sources/src/scaling.c | 166 - osqp-1.0.0/osqp/src/osqp_sources/src/timing_linux.c |only osqp-1.0.0/osqp/src/osqp_sources/src/timing_macos.c |only osqp-1.0.0/osqp/src/osqp_sources/src/timing_windows.c |only osqp-1.0.0/osqp/src/osqp_sources/src/util.c | 425 +-- osqp-1.0.0/osqp/src/printing_R.h |only osqp-1.0.0/osqp/src/qdldl_sources |only osqp-1.0.0/osqp/src/qdldl_types_R.h | 8 osqp-1.0.0/osqp/tests/testthat/test-dollar-deprecation.R |only osqp-1.0.0/osqp/tests/testthat/test-solve-basic-qp.R | 14 osqp-1.0.0/osqp/tests/testthat/test-update-matrices.R | 6 osqp-1.0.0/osqp/tests/testthat/test-warm-start.R |only osqp-1.0.0/osqp/vignettes |only 98 files changed, 3513 insertions(+), 2266 deletions(-)
Title: Automatically Runs 18 Individual and 14 Ensembles of Models
Description: Automatically runs 18 individual models and 14 ensembles on numeric data, for a total of 32 models. The package automatically returns complete results on all 32 models,
25 charts and six tables. The user simply provides the tidy data, and answers a few questions (for example, how many times would you like to resample the data).
From there the package randomly splits the data into train, test and validation sets as the user requests (for example, train = 0.60, test = 0.20, validation = 0.20),
fits each of models on the training data, makes predictions on the test and validation sets, measures root mean squared error (RMSE), removes features above a user-set level of Variance Inflation Factor, and has several optional features including scaling
all numeric data, four different ways to handle strings in the data. Perhaps the most significant feature is the package's ability to make predictions
using the 32 pre trained models on totally new (untrained) data if the user selects that feature [...truncated...]
Author: Russ Conte [aut, cre, cph]
Maintainer: Russ Conte <russconte@mac.com>
Diff between NumericEnsembles versions 1.0.3 dated 2026-02-26 and 1.0.5 dated 2026-03-01
DESCRIPTION | 6 +-- MD5 | 7 ++- NEWS.md | 5 ++ R/NumericEnsembles.R | 51 ++++++++++++++++++++++++--- vignettes/images/ensemble_cubist_summary.jpg |only 5 files changed, 59 insertions(+), 10 deletions(-)
More information about NumericEnsembles at CRAN
Permanent link
Title: Conditional Logistic Regression
Description: Performs inference for Bayesian conditional logistic regression with informative priors built from the concordant pair data. We include many options to build the priors. And we include many options during the inference step for estimation, testing and confidence set creation. For details, see Kapelner and Tennenbaum (2026) "Improved Conditional Logistic Regression using Information in Concordant Pairs with Software" <doi:10.48550/arXiv.2602.08212>.
Author: Adam Kapelner [aut, cre] ,
Jacob Tennenbaum [aut]
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between bclogit versions 1.0 dated 2026-02-25 and 1.1 dated 2026-03-01
CHANGELOG |only DESCRIPTION | 8 ++--- MD5 | 53 +++++++++++++++++---------------- R/bclogit.formula.R | 5 +-- R/bclogit_S3.R | 64 ++++++++++++++++++++++++++++++++++++++++ R/clogit.default.R | 13 ++++++++ R/clogit_S3.R | 11 +++++-- R/coef.bclogit.R | 10 +++++- R/confint.bclogit.R | 1 R/default.bclogit.R | 55 +++++++++++++++++++++++++++++++---- R/formula.bclogit.R | 11 ++++++- R/print.summary.bclogit.R | 8 +++++ R/summary.bclogit.R | 2 + R/summary.clogit_bclogit.R | 12 +++++++ R/vcov.bclogit.R | 11 ++++++- R/vcov.clogit_bclogit.R | 14 ++++++++ man/bclogit-package.Rd | 1 man/bclogit.Rd | 66 ++++++++++++++++++++++++++++++++++++++++++ man/clogit.Rd | 7 +++- man/coef.bclogit.Rd | 13 +++++++- man/confint.bclogit.Rd | 3 + man/formula.bclogit.Rd | 14 ++++++++ man/print.summary.bclogit.Rd | 11 +++++++ man/summary.bclogit.Rd | 4 ++ man/summary.clogit_bclogit.Rd | 15 +++++++++ man/vcov.bclogit.Rd | 14 ++++++++ man/vcov.clogit_bclogit.Rd | 17 ++++++++++ src/Makevars.win | 2 - 28 files changed, 394 insertions(+), 51 deletions(-)
Title: Retrieve 'AirNow' Air Quality Observations and Forecasts
Description: Retrieve air quality data via the 'AirNow'
<https://www.airnow.gov/> API.
Author: Brian Connelly [aut, cre, cph]
Maintainer: Brian Connelly <bdc@bconnelly.net>
This is a re-admission after prior archival of version 0.1.0 dated 2022-10-31
Diff between airnow versions 0.1.0 dated 2022-10-31 and 0.1.1 dated 2026-03-01
DESCRIPTION | 15 ++++++++------- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/get_airnow_area.R | 2 +- README.md | 18 +++++------------- man/airnow-package.Rd | 1 + man/get_airnow_area.Rd | 2 +- 7 files changed, 26 insertions(+), 28 deletions(-)
Title: Judd, McClelland, & Ryan Formatting for ANOVA Output
Description: Produces ANOVA tables in the format used by Judd, McClelland,
and Ryan (2017, ISBN: 978-1138819832) in their introductory textbook,
Data Analysis. This includes proportional reduction in error and
formatting to improve ease the transition between the book and R.
Author: Adam Blake [cre, aut] ,
Jeff Chrabaszcz [aut],
Ji Son [aut] ,
Jim Stigler [aut]
Maintainer: Adam Blake <adam@coursekata.org>
Diff between supernova versions 3.0.1 dated 2025-12-05 and 3.0.2 dated 2026-03-01
DESCRIPTION | 8 - MD5 | 10 +- NEWS.md | 6 + R/generate_models.R | 117 ++++++++++++++++++++++-- R/supernova.R | 246 +++++++++++++++++++++++++++++++++++++++++++++------- R/utils.R | 3 6 files changed, 342 insertions(+), 48 deletions(-)
Title: Interface to 'pomdp-solve' for Partially Observable Markov
Decision Processes
Description: Installs an updated version of 'pomdp-solve' and provides a low-level interface. Pomdp-solve is a program to solve Partially Observable Markov Decision Processes (POMDPs) using a variety of exact and approximate value iteration algorithms. A convenient R infrastructure is provided in the separate package pomdp. Hahsler and Cassandra <doi:10.32614/RJ-2024-021>.
Author: Michael Hahsler [aut, cph, cre] ,
Anthony R. Cassandra [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between pomdpSolve versions 1.0.4 dated 2023-08-31 and 1.0.6 dated 2026-03-01
DESCRIPTION | 16 ++++++++-------- MD5 | 27 ++++++++++++++------------- NEWS.md | 8 +++++++- R/AAA_pomdpSolve-package.R | 3 +++ R/find_pomdp_solve.R | 5 ++++- R/pomdp_solve.R | 8 ++++++-- R/read_write.R | 2 +- README.md | 18 ++++++++++-------- build/partial.rdb |binary inst/CITATION |only man/find_pomdp_solve.Rd | 5 ++++- man/pomdpSolve-package.Rd | 13 +++++++++++++ man/pomdp_solve.Rd | 7 +++++-- man/read_write.Rd | 2 +- src/Makevars | 6 +++++- 15 files changed, 81 insertions(+), 39 deletions(-)
Title: Bayesian Optimization and Model-Based Optimization of Expensive
Black-Box Functions
Description: Flexible and comprehensive R toolbox for model-based
optimization ('MBO'), also known as Bayesian optimization. It
implements the Efficient Global Optimization Algorithm and is designed
for both single- and multi- objective optimization with mixed
continuous, categorical and conditional parameters. The machine
learning toolbox 'mlr' provide dozens of regression learners to model
the performance of the target algorithm with respect to the parameter
settings. It provides many different infill criteria to guide the
search process. Additional features include multi-point batch
proposal, parallel execution as well as visualization and
sophisticated logging mechanisms, which is especially useful for
teaching and understanding of algorithm behavior. 'mlrMBO' is
implemented in a modular fashion, such that single components can be
easily replaced or adapted by the user for specific use cases.
Author: Bernd Bischl [aut] ,
Jakob Richter [aut] ,
Jakob Bossek [aut] ,
Daniel Horn [aut],
Michel Lang [aut] ,
Janek Thomas [aut] ,
Martin Binder [cre]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlrMBO versions 1.1.5.1 dated 2022-07-04 and 1.1.6 dated 2026-03-01
mlrMBO-1.1.5.1/mlrMBO/tests/testthat/Rplots.pdf |only mlrMBO-1.1.6/mlrMBO/DESCRIPTION | 79 +++-- mlrMBO-1.1.6/mlrMBO/MD5 | 47 +-- mlrMBO-1.1.6/mlrMBO/NEWS.md | 8 mlrMBO-1.1.6/mlrMBO/R/MBOResult.R | 18 - mlrMBO-1.1.6/mlrMBO/R/doc_error_handling.R | 2 mlrMBO-1.1.6/mlrMBO/R/doc_mbo_parallel.R | 6 mlrMBO-1.1.6/mlrMBO/R/makeMBOTrafoFunction.R | 6 mlrMBO-1.1.6/mlrMBO/R/plot_OptState.R | 6 mlrMBO-1.1.6/mlrMBO/R/renderExampleRunPlotMultiObj.R | 2 mlrMBO-1.1.6/mlrMBO/R/setMBOControlInfill.R | 2 mlrMBO-1.1.6/mlrMBO/R/setMBOControlMultiObj.R | 4 mlrMBO-1.1.6/mlrMBO/README.md | 4 mlrMBO-1.1.6/mlrMBO/build/vignette.rds |binary mlrMBO-1.1.6/mlrMBO/inst/doc/mlrMBO.html | 144 ++++------ mlrMBO-1.1.6/mlrMBO/man/MBOMultiObjResult.Rd | 8 mlrMBO-1.1.6/mlrMBO/man/MBOSingleObjResult.Rd | 10 mlrMBO-1.1.6/mlrMBO/man/error_handling.Rd | 2 mlrMBO-1.1.6/mlrMBO/man/mbo_parallel.Rd | 6 mlrMBO-1.1.6/mlrMBO/man/setMBOControlInfill.Rd | 2 mlrMBO-1.1.6/mlrMBO/man/setMBOControlMultiObj.Rd | 4 mlrMBO-1.1.6/mlrMBO/man/trafos.Rd | 6 mlrMBO-1.1.6/mlrMBO/tests/testthat/test_makeMBOLearner.R | 80 ++--- mlrMBO-1.1.6/mlrMBO/tests/testthat/test_plot_MBOResult.R | 7 mlrMBO-1.1.6/mlrMBO/vignettes/supplementary/parallelization.Rmd | 2 25 files changed, 236 insertions(+), 219 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] ,
Lennart Schneider [aut] ,
Bernd Bischl [aut] ,
Michel Lang [aut] ,
Sebastian Fischer [aut] ,
Susanne Dandl [aut],
Keno Mersmann [ctb],
Maximilian Muecke [ctb] ,
Lona Koers [ctb],
Alexander Winterstet [...truncated...]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.10.0 dated 2025-11-07 and 0.11.0 dated 2026-03-01
DESCRIPTION | 41 +-- MD5 | 272 ++++++++++++------------- NAMESPACE | 2 NEWS.md | 13 + R/FilterEnsemble.R | 84 ++++++- R/GraphLearner.R | 25 ++ R/LearnerAvg.R | 2 R/PipeOpClassWeights.R | 70 +++--- R/PipeOpClassWeightsEx.R |only R/PipeOpEncode.R | 4 R/PipeOpFilter.R | 2 R/PipeOpImpute.R | 4 R/PipeOpImputeConstant.R | 5 R/PipeOpImputeHist.R | 24 +- R/PipeOpImputeLearner.R | 8 R/PipeOpImputeMean.R | 10 R/PipeOpImputeMedian.R | 10 R/PipeOpImputeMode.R | 4 R/PipeOpImputeOOR.R | 17 - R/PipeOpImputeSample.R | 6 R/PipeOpLearnerCV.R | 108 ++++----- R/PipeOpRenameColumns.R | 57 +++-- R/PipeOpSplines.R |only R/PipeOpTaskPreproc.R | 2 R/PipeOpTextVectorizer.R | 2 R/PipeOpTuneThreshold.R | 2 R/operators.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/extending.html | 9 man/PipeOp.Rd | 2 man/PipeOpEncodePL.Rd | 2 man/PipeOpEnsemble.Rd | 2 man/PipeOpImpute.Rd | 2 man/PipeOpTargetTrafo.Rd | 2 man/PipeOpTaskPreproc.Rd | 2 man/PipeOpTaskPreprocSimple.Rd | 2 man/grapes-greater-than-greater-than-grapes.Rd | 2 man/mlr3pipelines-package.Rd | 1 man/mlr_filters_ensemble.Rd | 52 ++++ man/mlr_learners_graph.Rd | 11 + man/mlr_pipeops.Rd | 2 man/mlr_pipeops_adas.Rd | 2 man/mlr_pipeops_blsmote.Rd | 2 man/mlr_pipeops_boxcox.Rd | 2 man/mlr_pipeops_branch.Rd | 2 man/mlr_pipeops_chunk.Rd | 2 man/mlr_pipeops_classbalancing.Rd | 2 man/mlr_pipeops_classifavg.Rd | 2 man/mlr_pipeops_classweights.Rd | 42 ++- man/mlr_pipeops_classweightsex.Rd |only man/mlr_pipeops_colapply.Rd | 2 man/mlr_pipeops_collapsefactors.Rd | 2 man/mlr_pipeops_colroles.Rd | 2 man/mlr_pipeops_copy.Rd | 2 man/mlr_pipeops_datefeatures.Rd | 2 man/mlr_pipeops_decode.Rd | 2 man/mlr_pipeops_encode.Rd | 6 man/mlr_pipeops_encodeimpact.Rd | 2 man/mlr_pipeops_encodelmer.Rd | 2 man/mlr_pipeops_encodeplquantiles.Rd | 2 man/mlr_pipeops_encodepltree.Rd | 2 man/mlr_pipeops_featureunion.Rd | 2 man/mlr_pipeops_filter.Rd | 2 man/mlr_pipeops_fixfactors.Rd | 2 man/mlr_pipeops_histbin.Rd | 2 man/mlr_pipeops_ica.Rd | 2 man/mlr_pipeops_imputeconstant.Rd | 2 man/mlr_pipeops_imputehist.Rd | 8 man/mlr_pipeops_imputelearner.Rd | 4 man/mlr_pipeops_imputemean.Rd | 10 man/mlr_pipeops_imputemedian.Rd | 10 man/mlr_pipeops_imputemode.Rd | 4 man/mlr_pipeops_imputeoor.Rd | 12 - man/mlr_pipeops_imputesample.Rd | 6 man/mlr_pipeops_info.Rd | 2 man/mlr_pipeops_isomap.Rd | 2 man/mlr_pipeops_kernelpca.Rd | 2 man/mlr_pipeops_learner.Rd | 2 man/mlr_pipeops_learner_cv.Rd | 2 man/mlr_pipeops_learner_pi_cvplus.Rd | 2 man/mlr_pipeops_learner_quantiles.Rd | 2 man/mlr_pipeops_missind.Rd | 2 man/mlr_pipeops_modelmatrix.Rd | 2 man/mlr_pipeops_multiplicityexply.Rd | 2 man/mlr_pipeops_multiplicityimply.Rd | 2 man/mlr_pipeops_mutate.Rd | 2 man/mlr_pipeops_nearmiss.Rd | 2 man/mlr_pipeops_nmf.Rd | 2 man/mlr_pipeops_nop.Rd | 2 man/mlr_pipeops_ovrsplit.Rd | 2 man/mlr_pipeops_ovrunite.Rd | 2 man/mlr_pipeops_pca.Rd | 2 man/mlr_pipeops_proxy.Rd | 2 man/mlr_pipeops_quantilebin.Rd | 2 man/mlr_pipeops_randomprojection.Rd | 2 man/mlr_pipeops_randomresponse.Rd | 2 man/mlr_pipeops_regravg.Rd | 2 man/mlr_pipeops_removeconstants.Rd | 2 man/mlr_pipeops_renamecolumns.Rd | 22 +- man/mlr_pipeops_replicate.Rd | 2 man/mlr_pipeops_rowapply.Rd | 2 man/mlr_pipeops_scale.Rd | 2 man/mlr_pipeops_scalemaxabs.Rd | 2 man/mlr_pipeops_scalerange.Rd | 2 man/mlr_pipeops_select.Rd | 2 man/mlr_pipeops_smote.Rd | 2 man/mlr_pipeops_smotenc.Rd | 2 man/mlr_pipeops_spatialsign.Rd | 2 man/mlr_pipeops_splines.Rd |only man/mlr_pipeops_subsample.Rd | 2 man/mlr_pipeops_targetinvert.Rd | 2 man/mlr_pipeops_targetmutate.Rd | 2 man/mlr_pipeops_targettrafoscalerange.Rd | 2 man/mlr_pipeops_textvectorizer.Rd | 2 man/mlr_pipeops_threshold.Rd | 2 man/mlr_pipeops_tomek.Rd | 2 man/mlr_pipeops_tunethreshold.Rd | 2 man/mlr_pipeops_unbranch.Rd | 2 man/mlr_pipeops_updatetarget.Rd | 2 man/mlr_pipeops_vtreat.Rd | 2 man/mlr_pipeops_yeojohnson.Rd | 2 tests/testthat/test_GraphLearner.R | 49 ++++ tests/testthat/test_doublearrow.R | 2 tests/testthat/test_filter_ensemble.R | 141 +++++++++++- tests/testthat/test_gunion.R | 2 tests/testthat/test_pipeop_classweights.R | 35 ++- tests/testthat/test_pipeop_classweightsex.R |only tests/testthat/test_pipeop_ensemble.R | 4 tests/testthat/test_pipeop_filter.R | 4 tests/testthat/test_pipeop_impute.R | 137 ++++++++---- tests/testthat/test_pipeop_info.R | 2 tests/testthat/test_pipeop_learnercv.R | 151 ++++++++++++- tests/testthat/test_pipeop_learnerpicvplus.R | 2 tests/testthat/test_pipeop_proxy.R | 2 tests/testthat/test_pipeop_renamecolumns.R | 20 + tests/testthat/test_pipeop_spatialsign.R | 2 tests/testthat/test_pipeop_splines.R |only tests/testthat/test_pipeop_updatetarget.R | 4 tests/testthat/test_ppl.R | 1 140 files changed, 1231 insertions(+), 454 deletions(-)
Title: Interior Point Conic Optimization Solver
Description: A versatile interior point solver that solves linear programs (LPs), quadratic programs (QPs), second-order cone programs (SOCPs), semidefinite programs (SDPs), and problems with exponential and power cone constraints (<https://clarabel.org/stable/>). For quadratic objectives, unlike interior point solvers based on the standard homogeneous self-dual embedding (HSDE) model, Clarabel handles quadratic objective without requiring any epigraphical reformulation of its objective function. It can therefore be significantly faster than other HSDE-based solvers for problems with quadratic objective functions. Infeasible problems are detected using using a homogeneous embedding technique.
Author: Balasubramanian Narasimhan [aut, cre],
Paul Goulart [aut, cph],
Yuwen Chen [aut],
Hiroaki Yutani [ctb] ,
David Zimmermann-Kollenda [ctb] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between clarabel versions 0.11.1 dated 2025-09-24 and 0.11.2 dated 2026-03-01
DESCRIPTION | 8 MD5 | 73 +++-- NAMESPACE | 7 NEWS.md | 16 + R/000-wrappers.R | 66 +++++ R/clarabel.R | 236 ++++++++++++++++-- R/sparse.R | 4 build/vignette.rds |binary cleanup | 4 configure | 20 + inst/doc/clarabel.R | 36 ++ inst/doc/clarabel.Rmd | 69 +++++ inst/doc/clarabel.html | 91 ++++++- inst/doc/warm-starts-cvxr.md |only inst/tinytest/test_api_dimension.R | 3 inst/tinytest/test_basic_eq_constrained.R | 4 inst/tinytest/test_basic_expcone.R | 4 inst/tinytest/test_basic_genpowcone.R | 4 inst/tinytest/test_basic_powcone.R | 4 inst/tinytest/test_basic_psd.R | 4 inst/tinytest/test_basic_socp.R | 4 inst/tinytest/test_basic_unconstrained.R | 4 inst/tinytest/test_empty_conespec.R |only inst/tinytest/test_mixed_conic.R | 4 inst/tinytest/test_presolve.R | 4 inst/tinytest/test_sdp_chordal.R | 3 man/ClarabelSolver.Rd |only man/clarabel_control.Rd | 9 man/clarabel_solver.Rd |only man/solver_is_update_allowed.Rd |only man/solver_solve.Rd |only man/solver_update.Rd |only src/Makevars.in | 12 src/Makevars.win | 1 src/init.c | 35 ++ src/rust/Cargo.lock | 175 ++++++------- src/rust/Cargo.toml | 4 src/rust/api.h | 8 src/rust/src/lib.rs | 380 ++++++++++++++++++------------ src/rust/vendor.tar.xz |binary vignettes/clarabel.Rmd | 69 +++++ 41 files changed, 1035 insertions(+), 330 deletions(-)
Title: Black Box Optimization and Exploration of Parameter Space
Description: Performs prediction of a response function from simulated response values, allowing black-box optimization of functions estimated with some error. Includes a simple user interface for such applications, as well as more specialized functions designed to be called by the Migraine software (Rousset and Leblois, 2012 <doi:10.1093/molbev/MSR262>; Leblois et al., 2014 <doi:10.1093/molbev/msu212>; and see URL). The latter functions are used for prediction of likelihood surfaces and implied likelihood ratio confidence intervals, and for exploration of predictor space of the surface. Prediction of the response is based on ordinary Kriging (with residual error) of the input. Estimation of smoothing parameters is performed by generalized cross-validation.
Author: Francois Rousset [aut, cre, cph] ,
Raphael Leblois [ctb]
Maintainer: Francois Rousset <francois.rousset@umontpellier.fr>
Diff between blackbox versions 1.1.46 dated 2023-12-07 and 1.1.54 dated 2026-03-01
blackbox-1.1.46/blackbox/src/Makevars |only blackbox-1.1.54/blackbox/DESCRIPTION | 17 +++++---- blackbox-1.1.54/blackbox/MD5 | 39 ++++++++++------------ blackbox-1.1.54/blackbox/R/blackbox.R | 8 ++-- blackbox-1.1.54/blackbox/inst/NEWS.Rd | 6 +++ blackbox-1.1.54/blackbox/man/bboptim.Rd | 8 ++-- blackbox-1.1.54/blackbox/man/blackbox.Rd | 6 +-- blackbox-1.1.54/blackbox/man/buildFONKgpointls.Rd | 2 - blackbox-1.1.54/blackbox/man/calc1Dprofiles.Rd | 4 +- blackbox-1.1.54/blackbox/man/calcGCV.Rd | 2 - blackbox-1.1.54/blackbox/man/init_grid.Rd | 2 - blackbox-1.1.54/blackbox/man/options.Rd | 4 +- blackbox-1.1.54/blackbox/man/writeFinalInfo.Rd | 2 - blackbox-1.1.54/blackbox/src/Bessel_nr.h | 14 ------- blackbox-1.1.54/blackbox/src/Krigmain.cpp | 10 +++-- blackbox-1.1.54/blackbox/src/pointls.cpp | 8 ++-- blackbox-1.1.54/blackbox/src/qr.h | 16 ++++----- blackbox-1.1.54/blackbox/src/smooth.cpp | 12 +++--- blackbox-1.1.54/blackbox/src/smooth.h | 6 +-- blackbox-1.1.54/blackbox/src/smoothFriends.h | 13 ++----- blackbox-1.1.54/blackbox/tests/test-all.R | 2 - 21 files changed, 89 insertions(+), 92 deletions(-)
Title: Automatic Plotting and Theming of Many Graphs
Description: Visual exploration and presentation of networks should not be difficult.
This package includes functions for plotting networks and network-related metrics with sensible and pretty defaults.
It includes 'ggplot2'-based plot methods for many popular network package classes.
It also includes some novel layout algorithms, and options for straightforward, consistent themes.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between autograph versions 0.5.0 dated 2025-11-19 and 0.6.0 dated 2026-03-01
autograph-0.5.0/autograph/R/theme_scales.R |only autograph-0.5.0/autograph/man/theme_scales.Rd |only autograph-0.5.0/autograph/tests/testthat/test-theme_scales.R |only autograph-0.6.0/autograph/DESCRIPTION | 16 autograph-0.6.0/autograph/MD5 | 49 +- autograph-0.6.0/autograph/NAMESPACE | 30 - autograph-0.6.0/autograph/NEWS.md | 40 ++ autograph-0.6.0/autograph/R/autograph_utilities.R | 11 autograph-0.6.0/autograph/R/graph_edges.R | 6 autograph-0.6.0/autograph/R/graph_labels.R | 17 autograph-0.6.0/autograph/R/graph_layout.R | 45 ++ autograph-0.6.0/autograph/R/graph_legends.R |only autograph-0.6.0/autograph/R/graph_nodes.R | 72 ++-- autograph-0.6.0/autograph/R/graphr.R | 64 +++ autograph-0.6.0/autograph/R/graphs.R | 1 autograph-0.6.0/autograph/R/grapht.R | 12 autograph-0.6.0/autograph/R/layout_partition.R | 174 ++++++++-- autograph-0.6.0/autograph/R/plot_gof.R | 58 ++- autograph-0.6.0/autograph/R/theme_palettes.R | 1 autograph-0.6.0/autograph/R/zzz.R | 2 autograph-0.6.0/autograph/build/partial.rdb |binary autograph-0.6.0/autograph/man/figures/logo-old.png |only autograph-0.6.0/autograph/man/figures/logo.png |binary autograph-0.6.0/autograph/man/layout_partition.Rd | 5 autograph-0.6.0/autograph/man/plot_gof.Rd | 8 autograph-0.6.0/autograph/man/plot_graphr.Rd | 19 - autograph-0.6.0/autograph/tests/testthat/test-graphr.R | 79 +++- autograph-0.6.0/autograph/tests/testthat/test-layout_partition.R | 61 +++ 28 files changed, 572 insertions(+), 198 deletions(-)
Title: Treatment Effect Estimation for Time-to-Event Data with
Intercurrent Events
Description: Analysis of treatment effects in clinical trials with time-to-event outcomes is complicated by intercurrent events. This package implements methods for estimating and inferring the cumulative incidence functions for time-to-event (TTE) outcomes with intercurrent events (ICE) under the five strategies outlined in the ICH E9 (R1) addendum, see Deng (2025) <doi:10.1002/sim.70091>. This package can be used for analyzing data from both randomized controlled trials and observational studies. In general, the data involve a primary outcome event and, potentially, an intercurrent event. Two data structures are allowed: competing risks, where only the time to the first event is recorded, and semicompeting risks, where the times to both the primary outcome event and intercurrent event (or censoring) are recorded. For estimation methods, users can choose nonparametric estimation (which does not use covariates) and semiparametrically efficient estimation.
Author: Yuhao Deng [aut],
Yi Zhou [cre]
Maintainer: Yi Zhou <yzhou@pku.edu.cn>
Diff between tteICE versions 1.1.1 dated 2026-02-04 and 1.1.2 dated 2026-02-28
DESCRIPTION | 12 MD5 | 174 ++++++----- NAMESPACE | 33 -- R/basehaz_tteICE.R |only R/basic.R | 4 R/bmt.R | 76 ++-- R/bshaz.R |only R/bshaz_tteICE.R |only R/coef_tteICE.R |only R/plot_ate.R | 38 -- R/plot_inc.R | 38 -- R/plot_tteICE.R | 12 R/print_summary_tteICE.R |only R/print_tteICE.R | 2 R/scr_composite.R | 118 +++---- R/scr_composite_eff.R | 124 ++++---- R/scr_natural.R | 402 +++++++++++++------------- R/scr_natural_eff.R | 503 +++++++++++++++++---------------- R/scr_principal.R | 118 +++---- R/scr_principal_eff.R | 130 ++++---- R/scr_removed.R | 128 ++++---- R/scr_removed_eff.R | 136 ++++---- R/scr_treatment.R | 130 ++++---- R/scr_treatment_eff.R | 136 ++++---- R/scr_tteICE.R | 5 R/scr_whileon.R | 132 ++++---- R/scr_whileon_eff.R | 140 ++++----- R/summary_tteICE.R | 2 R/surv_HR.R | 184 ++++++------ R/surv_boot.R | 19 - R/surv_composite.R | 145 ++++----- R/surv_composite_eff.R | 216 +++++++------- R/surv_natural.R | 200 ++++++------- R/surv_natural_eff.R | 291 ++++++++++--------- R/surv_principal.R | 231 +++++++-------- R/surv_principal_eff.R | 300 ++++++++++--------- R/surv_removed.R | 154 +++++----- R/surv_removed_eff.R | 246 ++++++++-------- R/surv_treatment.R | 161 +++++----- R/surv_treatment_eff.R | 234 ++++++++------- R/surv_tteICE.R | 34 +- R/surv_whileon.R | 207 ++++++------- R/surv_whileon_eff.R | 282 +++++++++--------- R/tteICE-package.R | 27 + R/tteICE.R | 13 R/tteICEShiny.R | 52 +-- R/zph.R |only R/zph_tteICE.R |only inst/WORDLIST | 15 inst/tteICE.pdf |binary man/basehaz.tteICE.Rd |only man/bmt.Rd | 96 +++--- man/bshaz.Rd |only man/bshaz.tteICE.Rd |only man/coef.tteICE.Rd |only man/figures/lifecycle-deprecated.svg | 42 +- man/figures/lifecycle-experimental.svg | 42 +- man/figures/lifecycle-stable.svg | 58 +-- man/figures/lifecycle-superseded.svg | 42 +- man/plot.tteICE.Rd | 158 +++++----- man/plot_ate.Rd | 38 -- man/plot_inc.Rd | 38 -- man/print.summary.tteICE.Rd |only man/print.tteICE.Rd | 92 +++--- man/scr.composite.Rd | 131 ++++---- man/scr.composite.eff.Rd | 123 ++++---- man/scr.natural.Rd | 138 ++++----- man/scr.natural.eff.Rd | 144 ++++----- man/scr.principal.Rd | 131 ++++---- man/scr.principal.eff.Rd | 123 ++++---- man/scr.removed.Rd | 127 ++++---- man/scr.removed.eff.Rd | 135 ++++---- man/scr.treatment.Rd | 149 ++++----- man/scr.treatment.eff.Rd | 141 ++++----- man/scr.tteICE.Rd | 247 ++++++++-------- man/scr.whileon.Rd | 131 ++++---- man/scr.whileon.eff.Rd | 139 ++++----- man/surv.boot.Rd | 1 man/surv.composite.Rd | 112 +++---- man/surv.composite.eff.Rd | 116 +++---- man/surv.natural.Rd | 130 ++++---- man/surv.natural.eff.Rd | 136 ++++---- man/surv.principal.Rd | 110 +++---- man/surv.principal.eff.Rd | 116 +++---- man/surv.removed.Rd | 120 ++++--- man/surv.removed.eff.Rd | 126 ++++---- man/surv.treatment.Rd | 128 ++++---- man/surv.treatment.eff.Rd | 134 ++++---- man/surv.tteICE.Rd | 232 +++++++-------- man/surv.whileon.Rd | 124 ++++---- man/surv.whileon.eff.Rd | 132 ++++---- man/tteICE-package.Rd | 12 man/tteICE.Rd | 2 man/zph.Rd |only man/zph.tteICE.Rd |only 95 files changed, 4928 insertions(+), 4872 deletions(-)
Title: Modified Poisson Regression for Binary Outcome and Related
Methods
Description: Modified Poisson, logistic and least-squares regression analyses for binary outcomes of Zou (2004) <doi:10.1093/aje/kwh090>, Noma (2026)<doi:10.1016/j.spl.2026.110698>, and Cheung (2007) <doi:10.1093/aje/kwm223> have been standard multivariate analysis methods to estimate risk ratio and risk difference in clinical and epidemiological studies. This R package involves an easy-to-handle function to implement these analyses by simple commands. Missing data analysis tools (multiple imputation) are also involved. In addition, recent studies have shown the ordinary robust variance estimator possibly has serious bias under small or moderate sample size situations for these methods. This package also provides computational tools to calculate alternative accurate confidence intervals.
Author: Hisashi Noma [aut, cre]
Maintainer: Hisashi Noma <noma@ism.ac.jp>
Diff between rqlm versions 4.3-1 dated 2026-01-28 and 4.3-2 dated 2026-02-28
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ man/qlogist.Rd | 2 +- man/rqlm-package.Rd | 2 +- 5 files changed, 15 insertions(+), 11 deletions(-)
Title: Projected Spatial Gaussian Process Methods
Description: Implements projected sparse Gaussian process Kriging ('Ingram et. al.', 2008, <doi:10.1007/s00477-007-0163-9>) as an additional method for the 'intamap' package. More details on implementation ('Barillec et. al.', 2010, <doi:10.1016/j.cageo.2010.05.008>).
Author: Ben Ingram [aut, cre] ,
Remi Barillec [aut],
Jon Olav Skoien [aut]
Maintainer: Ben Ingram <ingrambr.work@gmail.com>
Diff between psgp versions 0.3-25 dated 2025-09-29 and 0.3-26 dated 2026-02-28
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/PSGP.cpp | 14 +++++++------- src/RInterface.cpp | 12 ++++++------ 5 files changed, 24 insertions(+), 21 deletions(-)
Title: Dataset of the 'Contoso' Company
Description: A collection of synthetic datasets simulating sales transactions from a fictional company. The dataset includes various related tables that contain essential business and operational data, useful for analyzing sales performance and other business insights. Key tables included in the package are:
- "sales": Contains data on individual sales transactions, including order details, pricing, quantities, and customer information.
- "customer": Stores customer-specific details such as demographics, geographic location, occupation, and birthday.
- "store": Provides information about stores, including location, size, status, and operational dates.
- "orders": Contains details about customer orders, including order and delivery dates, store, and customer data.
- "product": Contains data on products, including attributes such as product name, category, price, cost, and weight.
- "calendar": A time-based table that includes date-related attributes like year, month, quarter, day, and working day in [...truncated...]
Author: Alejandro Hagan [aut, cre]
Maintainer: Alejandro Hagan <alejandro.hagan@outlook.com>
Diff between contoso versions 2.0.0 dated 2026-02-03 and 2.1.0 dated 2026-02-28
contoso-2.0.0/contoso/man/figures/contoso_water_color.jpg |only contoso-2.1.0/contoso/DESCRIPTION | 17 ++-- contoso-2.1.0/contoso/MD5 | 37 +++++----- contoso-2.1.0/contoso/NEWS.md | 9 ++ contoso-2.1.0/contoso/R/data.R | 50 +++++++------- contoso-2.1.0/contoso/R/database.R | 43 +++--------- contoso-2.1.0/contoso/README.md | 18 +++-- contoso-2.1.0/contoso/data/calendar.rda |binary contoso-2.1.0/contoso/data/customer.rda |binary contoso-2.1.0/contoso/data/sales.rda |binary contoso-2.1.0/contoso/man/calendar.Rd | 10 +- contoso-2.1.0/contoso/man/create_contoso_duckdb.Rd | 2 contoso-2.1.0/contoso/man/customer.Rd | 10 +- contoso-2.1.0/contoso/man/figures/logo.png |binary contoso-2.1.0/contoso/man/fx.Rd | 2 contoso-2.1.0/contoso/man/orderrows.Rd | 4 - contoso-2.1.0/contoso/man/orders.Rd | 4 - contoso-2.1.0/contoso/man/product.Rd | 4 - contoso-2.1.0/contoso/man/sales.Rd | 12 +-- contoso-2.1.0/contoso/man/store.Rd | 4 - 20 files changed, 110 insertions(+), 116 deletions(-)
Title: High-Performance Geocoding using 'photon'
Description: Features unstructured, structured and reverse geocoding using the
'photon' geocoding API <https://photon.komoot.io/>.
Facilitates the setup of local 'photon' instances to enable offline
geocoding.
Author: Jonas Lieth [aut, cre, cph]
Maintainer: Jonas Lieth <jslth@outlook.com>
Diff between photon versions 0.7.4-1 dated 2026-01-17 and 1.0.0 dated 2026-02-28
photon-0.7.4-1/photon/man/download_searchindex.Rd |only photon-1.0.0/photon/DESCRIPTION | 10 photon-1.0.0/photon/MD5 | 70 ++-- photon-1.0.0/photon/NAMESPACE | 3 photon-1.0.0/photon/NEWS.md | 29 + photon-1.0.0/photon/R/assert.R | 8 photon-1.0.0/photon/R/download-db.R | 263 +++++++++-------- photon-1.0.0/photon/R/download-photon.R | 2 photon-1.0.0/photon/R/geocode.R | 30 +- photon-1.0.0/photon/R/new_photon.R | 52 --- photon-1.0.0/photon/R/photon-package.R | 2 photon-1.0.0/photon/R/photon_local.R | 309 +++++++++++---------- photon-1.0.0/photon/R/query_photon.R | 13 photon-1.0.0/photon/R/reverse.R | 20 + photon-1.0.0/photon/R/run_photon.R | 80 ++++- photon-1.0.0/photon/R/structured.R | 50 +-- photon-1.0.0/photon/R/utils.R | 20 + photon-1.0.0/photon/README.md | 64 +++- photon-1.0.0/photon/inst/doc/nominatim-import.R | 63 +--- photon-1.0.0/photon/inst/doc/nominatim-import.Rmd | 81 ++--- photon-1.0.0/photon/inst/doc/nominatim-import.html | 114 +++---- photon-1.0.0/photon/inst/doc/photon.R | 105 ++----- photon-1.0.0/photon/inst/doc/photon.Rmd | 123 +++----- photon-1.0.0/photon/inst/doc/photon.html | 208 ++++++-------- photon-1.0.0/photon/man/download_database.Rd |only photon-1.0.0/photon/man/download_photon.Rd | 2 photon-1.0.0/photon/man/geocode.Rd | 15 + photon-1.0.0/photon/man/new_photon.Rd | 65 +--- photon-1.0.0/photon/man/photon-package.Rd | 2 photon-1.0.0/photon/man/photon_local.Rd | 200 +++++++------ photon-1.0.0/photon/man/reverse.Rd | 15 + photon-1.0.0/photon/man/structured.Rd | 40 +- photon-1.0.0/photon/tests/testthat/test-geocode.R | 30 -- photon-1.0.0/photon/tests/testthat/test-setup.R | 45 +-- photon-1.0.0/photon/tests/testthat/test-utils.R | 3 photon-1.0.0/photon/vignettes/nominatim-import.Rmd | 81 ++--- photon-1.0.0/photon/vignettes/photon.Rmd | 123 +++----- 37 files changed, 1207 insertions(+), 1133 deletions(-)
Title: Generate Publication-Ready Statistical Tables
Description: A collection of functions for generating frequency tables and cross-tabulations of categorical variables. The resulting tables can be exported to various formats (Excel, PDF, HTML, etc.) with extensive formatting and layout customization options.
Author: Bhas Abdulsamad [aut, cre, cph]
Maintainer: Bhas Abdulsamad <aeabdulsamad@gmail.com>
Diff between tsg versions 0.1.2 dated 2026-02-22 and 0.1.3 dated 2026-02-28
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/generate_crosstab.R | 8 +++----- R/helpers.R | 22 ++++++++++++++++------ R/utils.R | 23 +++++++++++++++++++++++ tests/testthat/test-generate_crosstab.R | 26 ++++++++++++++++++++++++++ tests/testthat/test-generate_frequency.R | 16 ++++++++++++++++ 8 files changed, 100 insertions(+), 21 deletions(-)
Title: Analysis of Selection Index in Plant Breeding
Description: Provides tools for the simultaneous improvement of multiple traits in plant breeding. Building upon the classical selection index (Smith 1937 <doi:10.1111/j.1469-1809.1936.tb02143.x>) and modern quantitative genetics (Kang 2020 <doi:10.1007/978-3-319-91223-3>), this package calculates classical phenotypic, genomic, marker-assisted, restricted/constrained, and eigen selection indices. It also incorporates multi-stage selection evaluation and stochastic simulations to estimate genetic advance based on economic weights, heritability, and genetic correlations.
Author: Zankrut Goyani [aut, cre, cph]
Maintainer: Zankrut Goyani <zankrut20@gmail.com>
Diff between selection.index versions 1.2.1 dated 2026-01-26 and 2.0.0 dated 2026-02-28
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selection.index-2.0.0/selection.index/tests/testthat/test-constrained_genomic_indices.R |only selection.index-2.0.0/selection.index/tests/testthat/test-constrained_indices.R |only selection.index-2.0.0/selection.index/tests/testthat/test-cpp_math_primitives.R |only selection.index-2.0.0/selection.index/tests/testthat/test-cpp_wrappers.R |only selection.index-2.0.0/selection.index/tests/testthat/test-design_stats.R |only selection.index-2.0.0/selection.index/tests/testthat/test-eigen_indices.R |only selection.index-2.0.0/selection.index/tests/testthat/test-gen_advance.R |only selection.index-2.0.0/selection.index/tests/testthat/test-genomic_eigen_indices.R |only selection.index-2.0.0/selection.index/tests/testthat/test-genomic_indices.R |only selection.index-2.0.0/selection.index/tests/testthat/test-genomic_varcov.R |only selection.index-2.0.0/selection.index/tests/testthat/test-genphen.R | 179 +++++++- selection.index-2.0.0/selection.index/tests/testthat/test-helpers_validation.R |only selection.index-2.0.0/selection.index/tests/testthat/test-lpsi.R |only selection.index-2.0.0/selection.index/tests/testthat/test-marker_indices.R |only selection.index-2.0.0/selection.index/tests/testthat/test-mean_performance.R |only selection.index-2.0.0/selection.index/tests/testthat/test-missing_value.R |only selection.index-2.0.0/selection.index/tests/testthat/test-missing_value_estimation.R |only selection.index-2.0.0/selection.index/tests/testthat/test-multistage_genomic_indices.R |only selection.index-2.0.0/selection.index/tests/testthat/test-multistage_phenotypic_indices.R |only selection.index-2.0.0/selection.index/tests/testthat/test-phenotypic_indices.R |only selection.index-2.0.0/selection.index/tests/testthat/test-predict_selection_score.R |only selection.index-2.0.0/selection.index/tests/testthat/test-stochastic_simulation.R |only selection.index-2.0.0/selection.index/tests/testthat/test-weight_mat.R |only selection.index-2.0.0/selection.index/vignettes/constrained-linear-genomic-selection-indices.Rmd |only selection.index-2.0.0/selection.index/vignettes/constrained-linear-phenotypic-selection-indices.Rmd |only selection.index-2.0.0/selection.index/vignettes/getting-started.Rmd |only selection.index-2.0.0/selection.index/vignettes/linear-genomic-eigen-selection-index-methods.Rmd |only selection.index-2.0.0/selection.index/vignettes/linear-genomic-selection-indices.Rmd |only selection.index-2.0.0/selection.index/vignettes/linear-marker-selection-indices.Rmd |only selection.index-2.0.0/selection.index/vignettes/linear-phenotypic-eigen-selection-index-methods.Rmd |only selection.index-2.0.0/selection.index/vignettes/linear-phenotypic-selection-index.Rmd |only selection.index-2.0.0/selection.index/vignettes/multistage-linear-selection-indices.Rmd |only selection.index-2.0.0/selection.index/vignettes/stochastic-simulation-linear-phenotypic-indices.Rmd |only 212 files changed, 624 insertions(+), 191 deletions(-)
More information about selection.index at CRAN
Permanent link
Title: Reading Portable Encapsulated Projects
Description: A PEP, or Portable Encapsulated Project, is a dataset that
subscribes to the PEP structure for organizing metadata. It is written using
a simple YAML + CSV format, it is your one-stop solution to metadata
management across data analysis environments. This package reads this
standardized project configuration structure into R.
Described in Sheffield et al. (2021) <doi:10.1093/gigascience/giab077>.
Author: Nathan Sheffield [aut, cph, cre],
Michal Stolarczyk [aut]
Maintainer: Nathan Sheffield <nathan@code.databio.org>
This is a re-admission after prior archival of version 0.5.0 dated 2023-11-21
Diff between pepr versions 0.5.0 dated 2023-11-21 and 0.6.0 dated 2026-02-28
DESCRIPTION | 25 MD5 | 76 +- NAMESPACE | 5 NEWS.md | 27 R/config.R | 15 R/constants.R | 3 R/pepr.R | 2 R/project.R | 803 +++++++++++++----------- R/utils.R | 174 +++++ README.md | 4 build/vignette.rds |binary inst/doc/feature1_constantAttributes.Rmd | 2 inst/doc/feature1_constantAttributes.html | 44 - inst/doc/feature2_impliedAttributes.Rmd | 4 inst/doc/feature2_impliedAttributes.html | 109 +-- inst/doc/feature3_derivedAttributes.Rmd | 2 inst/doc/feature3_derivedAttributes.html | 73 +- inst/doc/feature4_derivedImpliedAttributes.html | 79 +- inst/doc/feature5_sampleSubtable.Rmd | 4 inst/doc/feature5_sampleSubtable.html | 90 +- inst/doc/feature6_amendments.Rmd | 4 inst/doc/feature6_amendments.html | 112 +-- inst/doc/gettingStarted.R | 10 inst/doc/gettingStarted.Rmd | 23 inst/doc/gettingStarted.html | 71 +- man/dot-listOfListToListOfDT.Rd |only man/dot-loadSubsampleAnnotation.Rd | 4 man/dot-mergeAttrs.Rd | 2 man/dot-modifySamplesFetched.Rd |only man/fetchPEP.Rd |only man/pepr.Rd | 8 man/pullProject.Rd |only man/saveJWT.Rd |only man/saveProject.Rd |only tests/testthat/test_project.R | 51 + tests/testthat/test_utils.R | 8 vignettes/feature1_constantAttributes.Rmd | 2 vignettes/feature2_impliedAttributes.Rmd | 4 vignettes/feature3_derivedAttributes.Rmd | 2 vignettes/feature5_sampleSubtable.Rmd | 4 vignettes/feature6_amendments.Rmd | 4 vignettes/gettingStarted.Rmd | 23 42 files changed, 1151 insertions(+), 722 deletions(-)
Title: Visualize, Summarize and Simulate Data from Pedigrees
Description: Sensitivity and power analysis,
for calculating statistics describing pedigrees from wild populations,
and for visualizing pedigrees. This is a reboot of the methods developed by Morrissey and Wilson (2010) <doi: 10.1111/j.1755-0998.2009.02817.x>.
Author: Julien Martin [aut, cre] ,
Matthew Wolak [aut] ,
Susan Johnston [aut] ,
Joel Pick [aut] ,
Michael Morrissey [aut]
Maintainer: Julien Martin <julien.martin@uottawa.ca>
Diff between pedtricks versions 0.4.2 dated 2024-09-09 and 0.5.0 dated 2026-02-28
DESCRIPTION | 23 ++-- MD5 | 27 ++--- NAMESPACE | 2 NEWS.md | 17 +++ R/h2_samp_var.R |only R/micro_sim.R | 3 R/ped_stats.R | 240 ++++++++++++++++++++++++++++++++++------------- R/ped_stats_summary.R | 109 ++++++++++++--------- R/pedtricks-package.R | 2 R/utils.R | 198 ++++++++++++++++++++++++++++++++++++-- README.md | 2 build |only inst/WORDLIST | 1 man/h2_samp_var.Rd |only man/pedtricks-package.Rd | 3 man/summary.ped_stats.Rd | 4 16 files changed, 480 insertions(+), 151 deletions(-)
Title: Data Wrangling for Antimicrobial Resistance Studies
Description: Designed for analyzing the Medical Information Mart for Intensive Care(MIMIC) dataset,
a repository of freely accessible electronic health records. MIMER(MIMIC-enabled Research) package, offers
a suite of data wrangling functions tailored specifically for preparing the dataset for research purposes,
particularly in antimicrobial resistance(AMR) studies. It simplifies complex data manipulation tasks, allowing
researchers to focus on their primary inquiries without being bogged down by wrangling complexities.
Author: Anoop Velluva [aut, cre] ,
Alessandro Gerada [ctb] ,
Alexander Howard [ctb]
Maintainer: Anoop Velluva <anoop.velluva@liverpool.ac.uk>
This is a re-admission after prior archival of version 1.0.4 dated 2025-06-24
Diff between MIMER versions 1.0.4 dated 2025-06-24 and 1.0.5 dated 2026-02-28
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NEWS.md | 2 ++ 3 files changed, 8 insertions(+), 6 deletions(-)
Title: Invariance Partial Pruning Test
Description: An implementation of the Invariance Partial Pruning (IVPP) approach
described in Du, X., Johnson, S. U., Epskamp, S. (2025) The Invariance Partial
Pruning Approach to The Network Comparison in Longitudinal Data. IVPP is a
two-step method that first test for global network structural difference with
invariance test and then inspect specific edge difference with partial pruning.
The package also allows you to compute centrality measures and use radar chart to
plot. Analysis of bridge centralities by community pairs is also possible (e.g.,
the bridge strength from depression to anxiety, and from depression to panic disorder).
Author: Xinkai Du [aut, cre, cph]
Maintainer: Xinkai Du <xinkai.du.xd@gmail.com>
Diff between IVPP versions 1.1.1 dated 2025-05-26 and 1.1.2 dated 2026-02-28
DESCRIPTION | 12 ++-- MD5 | 23 +++++--- NAMESPACE | 9 +++ NEWS.md | 4 + R/IVPP.R | 122 ++++++++++++++++++++++++++++++++++++++++++++- R/aux_funs.R |only R/centrality.r |only R/mod_gen.R | 31 +++++++---- README.md | 13 ++++ man/IVPP-package.Rd | 2 man/bridge_by_community.Rd |only man/centrality.Rd |only man/centrality_radar.Rd |only man/gen_panelGVAR.Rd | 5 + man/gen_tsGVAR.Rd | 10 +++ 15 files changed, 200 insertions(+), 31 deletions(-)
Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit
conversion and formatting of Global Surface Summary of the Day
('GSOD') weather data from the from the USA National Centers for
Environmental Information ('NCEI'). The data were retired on
2025-08-29 and are no longer updated. Units are converted from from
United States Customary System ('USCS') units to International System
of Units ('SI'). Stations may be individually checked for number of
missing days defined by the user, where stations with too many missing
observations are omitted. Only stations with valid reported latitude
and longitude values are permitted in the final data. Additional
useful elements, saturation vapour pressure ('es'), actual vapour
pressure ('ea') and relative humidity ('RH') are calculated from the
original data using the improved August-Roche-Magnus approximation
(Alduchov & Eskridge 1996) and included in the final data set. The
resulting metadata include station identification information,
cou [...truncated...]
Author: Adam H. Sparks [aut, cre] ,
Tomislav Hengl [aut] ,
Andrew Nelson [aut] ,
Hugh Parsonage [cph, ctb] ,
Taras Kaduk [ctb] ,
Gwenael Giboire [ctb] ,
Lukasz Pawlik [ctb] ,
Ross Darnell [ctb] ,
Tyler Widdison [ctb] ` did not
return stations in order of nea [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 5.0.0 dated 2025-11-15 and 5.0.1 dated 2026-02-28
GSODR-5.0.0/GSODR/R/get_inventory.R |only GSODR-5.0.0/GSODR/R/update_station_list.R |only GSODR-5.0.0/GSODR/man/get_inventory.Rd |only GSODR-5.0.0/GSODR/man/update_station_list.Rd |only GSODR-5.0.1/GSODR/DESCRIPTION | 29 ++++++++++++--------------- GSODR-5.0.1/GSODR/MD5 | 22 ++++++++------------ GSODR-5.0.1/GSODR/NAMESPACE | 1 GSODR-5.0.1/GSODR/NEWS.md | 8 +++++++ GSODR-5.0.1/GSODR/R/GSODR-package.R | 1 GSODR-5.0.1/GSODR/R/get_GSOD.R | 3 -- GSODR-5.0.1/GSODR/R/zzz.R | 8 +++++++ GSODR-5.0.1/GSODR/README.md | 16 +++++--------- GSODR-5.0.1/GSODR/man/GSODR-package.Rd | 7 ++---- GSODR-5.0.1/GSODR/man/get_GSOD.Rd | 3 -- 14 files changed, 47 insertions(+), 51 deletions(-)
Title: Generate SVG Information Cards with Embedded Fonts and Badges
Description: Create self-contained SVG information cards with embedded 'Google
Fonts', shields-style badges, and custom logos. Cards are fully
portable SVG files ideal for dashboards, reports, and web applications.
Includes functions to export cards to PNG format and display them in
'R Markdown' and 'Quarto' documents.
Author: Andre Leite [aut, cre],
Hugo Vasconcelos [aut],
Diogo Bezerra [aut]
Maintainer: Andre Leite <leite@castlab.org>
This is a re-admission after prior archival of version 0.2.1 dated 2026-02-05
Diff between cardargus versions 0.2.1 dated 2026-02-05 and 0.2.2 dated 2026-02-28
DESCRIPTION | 9 MD5 | 17 - NAMESPACE | 2 R/chrome.R | 480 ++++++++++++++++++++++++++++++-------- man/batch_svg_to_base64_chrome.Rd |only man/batch_svg_to_png_chrome.Rd |only man/cleanup_chromote_session.Rd |only man/convert_svg_with_session.Rd |only man/ensure_chrome.Rd | 2 man/start_chrome_session.Rd |only man/svg_to_pdf_chrome.Rd | 6 man/svg_to_png_chrome.Rd | 8 12 files changed, 417 insertions(+), 107 deletions(-)
Title: Calendrical Calculations
Description: An R implementation of the algorithms described in Reingold and
Dershowitz (4th ed., Cambridge University Press, 2018) <doi:10.1017/9781107415058>,
allowing conversion between many different calendar systems. Cultural and religious holidays
from several calendars can be calculated.
Author: Rob Hyndman [aut, cre, cph] ,
Edward Reingold [cph, ctb] ,
Nachum Dershowitz [cph, ctb]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between calcal versions 1.0.3 dated 2026-02-25 and 1.0.4 dated 2026-02-28
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 3 +++ inst/doc/new_calendar.html | 4 ++-- tests/testthat/test-common.R | 32 ++++++++++++++------------------ 5 files changed, 26 insertions(+), 27 deletions(-)
Title: Equal-Area Hex Grids on the 'Snyder' 'ISEA' 'Icosahedron'
Description: Provides functions to build and use hexagonal discrete global grids
using the 'Snyder' 'ISEA' projection ('Snyder' 1992
<doi:10.3138/27H7-8K88-4882-1752>) and the 'H3' hierarchical hexagonal system
('Uber' Technologies). Implements the 'ISEA' discrete global grid system
('Sahr', 'White' and 'Kimerling' 2003 <doi:10.1559/152304003100011090>).
Includes a fast 'C++' core for 'ISEA' projection and aperture quantization,
an included 'H3' v4.4.1 C library for native 'H3' grid operations, and
'sf'/'terra'-compatible R wrappers for grid generation and coordinate assignment.
Output is compatible with 'dggridR' for interoperability.
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between hexify versions 0.3.9 dated 2026-02-04 and 0.6.5 dated 2026-02-28
DESCRIPTION | 19 +- MD5 | 142 ++++++++++++----- NAMESPACE | 2 NEWS.md | 76 +++++++++ R/RcppExports.R | 32 ++++ R/classes.R | 162 +++++++++++++++----- R/constants.R | 69 ++++++++ R/constructors.R | 99 ++++++++++-- R/crosswalk.R |only R/grid_helpers.R | 296 +++++++++++++++++++++++++++++++++++-- R/hexify-package.R | 7 R/hexify.R | 7 R/hexify_cell_to_sf.R | 32 +++- R/hexify_stats.R | 105 ++++++++++++- R/plot_globe.R | 120 ++++++++++----- R/plot_methods.R | 7 README.md | 28 +-- build/vignette.rds |binary cleanup |only inst/COPYRIGHTS |only inst/doc/h3.R |only inst/doc/h3.Rmd |only inst/doc/h3.html |only inst/doc/quickstart.html | 4 inst/doc/visualization.R | 14 - inst/doc/visualization.Rmd | 14 - inst/doc/visualization.html | 56 ++----- inst/doc/workflows.R | 11 - inst/doc/workflows.Rmd | 16 -- inst/doc/workflows.html | 46 ++--- man/HexData-class.Rd | 3 man/HexGridInfo-class.Rd | 6 man/cell_area.Rd |only man/cell_to_sf.Rd | 6 man/grid_clip.Rd | 6 man/grid_global.Rd | 6 man/grid_rect.Rd | 2 man/h3_crosswalk.Rd |only man/hex_grid.Rd | 24 ++- man/hexify_cell_to_sf.Rd | 7 man/hexify_compare_resolutions.Rd | 11 + man/plot_globe.Rd | 4 src/Makevars |only src/Makevars.win |only src/RcppExports.cpp | 103 ++++++++++++ src/h3 |only src/rcpp_cell.cpp | 16 ++ src/rcpp_h3.cpp |only tests/testthat/Rplots.pdf |binary tests/testthat/test-cell-area.R |only tests/testthat/test-crosswalk.R |only tests/testthat/test-grid-helpers.R | 47 +++++ tests/testthat/test-h3-native.R |only tests/testthat/test-h3.R |only vignettes/h3.Rmd |only vignettes/visualization.Rmd | 14 - vignettes/workflows.Rmd | 16 -- 57 files changed, 1313 insertions(+), 322 deletions(-)
Title: Grid Search Algorithm with a Zoom
Description: Implements a grid search algorithm with an adaptive zooming strategy
for global optimisation problems with multiple local optima.
The method recursively refines the search region around promising grid points,
providing reliable initial values for subsequent optimisation procedures.
The algorithm is computationally efficient in moderate- to high-dimensional settings.
Author: Yukai Yang [aut, cre]
Maintainer: Yukai Yang <yukai.yang@statistik.uu.se>
This is a re-admission after prior archival of version 1.0.0 dated 2019-01-03
Diff between zoomgrid versions 1.0.0 dated 2019-01-03 and 1.1.0 dated 2026-02-28
zoomgrid-1.0.0/zoomgrid/man/zoomgrid.Rd |only zoomgrid-1.1.0/zoomgrid/DESCRIPTION | 28 zoomgrid-1.1.0/zoomgrid/MD5 | 36 zoomgrid-1.1.0/zoomgrid/NAMESPACE | 2 zoomgrid-1.1.0/zoomgrid/NEWS.md | 40 zoomgrid-1.1.0/zoomgrid/R/algorithms.R | 676 +++++++++------- zoomgrid-1.1.0/zoomgrid/R/utils.R | 105 +- zoomgrid-1.1.0/zoomgrid/R/zoomgrid.R | 93 +- zoomgrid-1.1.0/zoomgrid/README.md |only zoomgrid-1.1.0/zoomgrid/build/vignette.rds |binary zoomgrid-1.1.0/zoomgrid/inst/CITATION |only zoomgrid-1.1.0/zoomgrid/inst/doc/zoomgrid-vignette.R | 52 - zoomgrid-1.1.0/zoomgrid/inst/doc/zoomgrid-vignette.Rmd | 50 - zoomgrid-1.1.0/zoomgrid/inst/doc/zoomgrid-vignette.html | 555 ++++++++++--- zoomgrid-1.1.0/zoomgrid/man/build_grid.Rd | 7 zoomgrid-1.1.0/zoomgrid/man/figures |only zoomgrid-1.1.0/zoomgrid/man/grid_search.Rd | 164 +-- zoomgrid-1.1.0/zoomgrid/man/grid_search_check.Rd | 93 +- zoomgrid-1.1.0/zoomgrid/man/zoomgrid-package.Rd |only zoomgrid-1.1.0/zoomgrid/vignettes/figures |only zoomgrid-1.1.0/zoomgrid/vignettes/zoomgrid-vignette.Rmd | 50 - 21 files changed, 1225 insertions(+), 726 deletions(-)
Title: Fast Likelihood Calculation for Phylogenetic Comparative Models
Description: Provides a C++ backend for multivariate phylogenetic comparative
models implemented in the R-package 'PCMBase'. Can be used in combination
with 'PCMBase' to enable fast and parallel likelihood calculation. Implements
the pruning likelihood calculation algorithm described in Mitov et al. (2020)
<doi:10.1016/j.tpb.2019.11.005>. Uses the 'SPLITT' C++ library for parallel tree traversal
described in Mitov and Stadler (2018) <doi:10.1111/2041-210X.13136>.
Author: Venelin Mitov [aut, cre, cph]
Maintainer: Venelin Mitov <vmitov@gmail.com>
Diff between PCMBaseCpp versions 0.1.11 dated 2025-05-04 and 0.1.12 dated 2026-02-28
DESCRIPTION | 8 MD5 | 20 NEWS.md | 3 R/BenchmarkRvsCpp.R | 648 ++--- R/Generic.R | 550 ++--- build/vignette.rds |binary inst/doc/PCMBaseCpp.R | 2 inst/doc/PCMBaseCpp.html | 20 src/Makevars | 1 src/QuadraticPoly.h | 4 src/SPLITT.h | 5109 +++++++++++++++++++++++------------------------ 11 files changed, 3194 insertions(+), 3171 deletions(-)
Title: Forensic Authorship Analysis
Description: Carry out comparative authorship analysis of disputed and undisputed texts within the Likelihood Ratio Framework for expressing evidence in forensic science. This package contains implementations of well-known algorithms for comparative authorship analysis, such as Smith and Aldridge's (2011) Cosine Delta <doi:10.1080/09296174.2011.533591> or Koppel and Winter's (2014) Impostors Method <doi:10.1002/asi.22954>, as well as functions to measure their performance and to calibrate their outputs into Log-Likelihood Ratios.
Author: Andrea Nini [aut, cre, cph] ,
David van Leeuwen [cph]
Maintainer: Andrea Nini <andrea.nini@manchester.ac.uk>
Diff between idiolect versions 1.1.1 dated 2025-12-03 and 1.2.0 dated 2026-02-28
DESCRIPTION | 8 MD5 | 56 +-- NEWS.md | 12 R/concordance.R | 71 +-- R/contentmask.R | 157 ++++---- R/create_corpus.R | 26 + R/enron.sample.R | 2 R/globals.R | 2 R/performance.R | 140 +++---- README.md | 1 data/enron.sample.rda |binary inst/doc/idiolect.R | 39 +- inst/doc/idiolect.Rmd | 106 +++-- inst/doc/idiolect.html | 638 ++++++++++++++++++----------------- man/concordance.Rd | 6 man/contentmask.Rd | 12 man/create_corpus.Rd | 6 man/enron.sample.Rd | 2 man/performance.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/concordance.md | 378 ++++++++++---------- tests/testthat/_snaps/contentmask.md | 39 +- tests/testthat/data/wrong_texts |only tests/testthat/test-concordance.R | 12 tests/testthat/test-contentmask.R | 18 tests/testthat/test-create_corpus.R | 10 tests/testthat/test-performance.R | 22 - vignettes/idiolect.Rmd | 106 +++-- vignettes/references.bib | 67 +-- 29 files changed, 1025 insertions(+), 913 deletions(-)
Title: A Lightweight Interface Between 'igraph' and 'ggplot2' Graphics
Description: Interface to integrate 'igraph' and 'ggplot2' graphics in a normalized coordinate system. 'RGraphSpace' implements new geometric objects using 'ggplot2' prototypes, customized for side-by-side visualization of multiple graphs. By scaling shapes and graph elements, 'RGraphSpace' helps to create layered visualizations that stay coherent across multiple graphs.
Author: Victor Apolonio [ctb],
Vinicius Chagas [ctb],
Mauro Castro [aut, cre]
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Diff between RGraphSpace versions 1.1.0 dated 2025-11-06 and 1.1.1 dated 2026-02-28
RGraphSpace-1.1.0/RGraphSpace/R/gspacePlots.R |only RGraphSpace-1.1.1/RGraphSpace/DESCRIPTION | 17 RGraphSpace-1.1.1/RGraphSpace/MD5 | 36 RGraphSpace-1.1.1/RGraphSpace/NAMESPACE | 36 RGraphSpace-1.1.1/RGraphSpace/R/gspaceChecks.R | 19 RGraphSpace-1.1.1/RGraphSpace/R/gspaceConstructor.R |only RGraphSpace-1.1.1/RGraphSpace/R/gspaceGenerics.R | 10 RGraphSpace-1.1.1/RGraphSpace/R/gspaceGeom.R |only RGraphSpace-1.1.1/RGraphSpace/R/gspaceMethods.R | 168 +-- RGraphSpace-1.1.1/RGraphSpace/R/gspaceMisc.R | 366 +++++++ RGraphSpace-1.1.1/RGraphSpace/R/gspaceSupplements.R | 606 +++--------- RGraphSpace-1.1.1/RGraphSpace/R/gspaceValidation.R | 218 ++-- RGraphSpace-1.1.1/RGraphSpace/inst/doc/RGraphSpace.R | 8 RGraphSpace-1.1.1/RGraphSpace/inst/doc/RGraphSpace.Rmd | 10 RGraphSpace-1.1.1/RGraphSpace/inst/doc/RGraphSpace.html | 51 - RGraphSpace-1.1.1/RGraphSpace/man/GeomEdgeSpace.Rd |only RGraphSpace-1.1.1/RGraphSpace/man/GeomNodeSpace.Rd |only RGraphSpace-1.1.1/RGraphSpace/man/GraphSpace-accessors.Rd | 30 RGraphSpace-1.1.1/RGraphSpace/man/geom_edgespace.Rd |only RGraphSpace-1.1.1/RGraphSpace/man/geom_nodespace.Rd |only RGraphSpace-1.1.1/RGraphSpace/man/legend-accessors.Rd |only RGraphSpace-1.1.1/RGraphSpace/man/plotGraphSpace-methods.Rd | 13 RGraphSpace-1.1.1/RGraphSpace/vignettes/RGraphSpace.Rmd | 10 23 files changed, 875 insertions(+), 723 deletions(-)
Title: Automated Construction of R Data Packages from REDCap Projects
Description: Export all data, including metadata, from a REDCap (Research
Electronic Data Capture) Project via the REDCap API
<https://projectredcap.org/wp-content/resources/REDCapTechnicalOverview.pdf>.
The exported (meta)data will be processed and formatted into a stand alone R
data package which can be installed and shared between researchers. Several
default reports are generated as vignettes in the resulting package.
Author: Peter DeWitt [aut, cre]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>
Diff between REDCapExporter versions 0.3.2 dated 2025-07-29 and 0.3.3 dated 2026-02-28
DESCRIPTION | 8 +- MD5 | 48 +++++++------- NEWS.md | 12 +++ R/build_r_data_package.R | 7 -- R/export_redcap_project.R | 4 - R/keyring.R | 7 -- build/vignette.rds |binary data/avs_raw_core.rda |binary data/avs_raw_core_json.rda |binary data/avs_raw_metadata.rda |binary data/avs_raw_metadata_json.rda |binary data/avs_raw_project.rda |binary data/avs_raw_project_json.rda |binary data/avs_raw_record.rda |binary data/avs_raw_record_json.rda |binary data/avs_raw_user.rda |binary data/avs_raw_user_json.rda |binary inst/doc/api.html | 4 - inst/doc/redcap2package.html | 40 ++++++------ man/REDCapExporter_keyring.Rd | 4 - man/build_r_data_package.Rd | 2 man/export_content.Rd | 2 man/export_core.Rd | 2 tests/test-export.R | 132 ++++++++++++++++++++++++++--------------- tests/test-keyring.R | 3 25 files changed, 161 insertions(+), 114 deletions(-)
More information about REDCapExporter at CRAN
Permanent link
Title: Quick Wraps 2
Description: A collection of (wrapper) functions the creator found useful
for quickly placing data summaries and formatted regression results into
'.Rnw' or '.Rmd' files. Functions for generating commonly used graphics,
such as receiver operating curves or Bland-Altman plots, are also provided
by 'qwraps2'. 'qwraps2' is an updated version of a package 'qwraps'. The
original version 'qwraps' was never submitted to CRAN but can be found at
<https://github.com/dewittpe/qwraps/>. The implementation and limited scope
of the functions within 'qwraps2' <https://github.com/dewittpe/qwraps2/> is
fundamentally different from 'qwraps'.
Author: Peter DeWitt [aut, cre] ,
Tell Bennett [ctb]
Maintainer: Peter DeWitt <dewittpe@gmail.com>
Diff between qwraps2 versions 0.6.1 dated 2024-10-15 and 0.6.2 dated 2026-02-28
DESCRIPTION | 17 ++++---- MD5 | 24 ++++++------ NEWS.md | 6 +++ R/qwraps2-package.R | 2 - build/vignette.rds |binary inst/doc/qwraps2-data-sets.html | 35 +++++++++-------- inst/doc/qwraps2-formatted-summary-statistics.R | 2 - inst/doc/qwraps2-formatted-summary-statistics.html | 26 +++++++------ inst/doc/qwraps2-graphics.html | 42 ++++++++++----------- inst/doc/qwraps2-summary-table.html | 40 ++++++++++---------- man/qwraps2-package.Rd | 4 +- man/stat_stepribbon.Rd | 6 ++- src/traprule.cpp | 4 +- 13 files changed, 110 insertions(+), 98 deletions(-)
Title: Spatial Projection of Network Signals along Geodesic Paths
Description: For a given graph containing vertices, edges, and a signal associated with the vertices, the 'PathwaySpace' package performs a convolution operation, which involves a weighted combination of neighboring vertices and their associated signals. The package then uses a decay function to project these signals, creating geodesic paths on a 2D-image space. 'PathwaySpace' could have various applications, such as visualizing network data in a graphical format that highlights the relationships and signal strengths between vertices. It can be particularly useful for understanding the influence of signals through complex networks. By combining graph theory, signal processing, and visualization, the 'PathwaySpace' package provides a novel way of representing graph data.
Author: Victor Apolonio [ctb],
Vinicius Chagas [ctb],
Sysbiolab and Collaborators [fnd],
Mauro Castro [aut, cre]
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Diff between PathwaySpace versions 1.1.0 dated 2025-11-06 and 1.1.1 dated 2026-02-28
DESCRIPTION | 8 +- MD5 | 19 ++--- NAMESPACE | 3 R/pspaceChecks.R | 17 ---- R/pspaceMisc.R | 141 ++++++++++++++++++++++++++++++++++++++-- R/pspacePlots.R | 87 +++++++----------------- R/pspaceSupplements.R | 52 +++++++++----- inst/doc/PathwaySpace.html | 37 ++++++---- man/plotPathwaySpace-methods.Rd | 12 --- man/pspace.cols.Rd | 8 +- man/pspace.pals.Rd |only 11 files changed, 246 insertions(+), 138 deletions(-)
Title: Bayesian Longitudinal Regularized Quantile Mixed Model
Description: With high-dimensional omics features, repeated measure ANOVA leads to longitudinal gene-environment interaction studies that have intra-cluster correlations, outlying observations and structured sparsity arising from the ANOVA design. In this package, we have developed robust sparse Bayesian mixed effect models tailored for the above studies (Fan et al. (2025) <doi:10.1093/jrsssc/qlaf027>). An efficient Gibbs sampler has been developed to facilitate fast computation. The Markov chain Monte Carlo algorithms of the proposed and alternative methods are efficiently implemented in 'C++'. The development of this software package and the associated statistical methods have been partially supported by an Innovative Research Award from Johnson Cancer Research Center, Kansas State University.
Author: Kun Fan [aut, cre],
Shejuty Devnath [aut],
Cen Wu [aut]
Maintainer: Kun Fan <kfan@ksu.edu>
Diff between mixedBayes versions 0.2.0 dated 2026-01-13 and 0.2.1 dated 2026-02-28
DESCRIPTION | 9 +++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/mixedBayes-package.R | 2 +- R/reformat.R | 34 ++++++++++++++++++---------------- README.md | 2 +- man/mixedBayes-package.Rd | 2 +- man/reformat.Rd | 8 ++++---- 8 files changed, 41 insertions(+), 34 deletions(-)
Title: Marshall-Olkin Shock Models with Semi-Independent Time
Description: Provides tools for analyzing Marshall-Olkin shock models semi-independent time.
It includes interactive 'shiny' applications for exploring copula-based dependence
structures, along with functions for modeling and visualization. The methods are
based on Mijanovic and Popovic (2024, submitted) "An R package for Marshall-Olkin
shock models with semi-independent times."
Author: Andjela Mijanovic [aut, cre],
Bozidar Popovic [aut]
Maintainer: Andjela Mijanovic <andjela.m@ucg.ac.me>
Diff between MOsemiind versions 0.1.0 dated 2025-02-04 and 0.1.2 dated 2026-02-28
DESCRIPTION | 6 MD5 | 4 inst/app/app.R | 876 ++++++++++++++++++++++++++++++--------------------------- 3 files changed, 480 insertions(+), 406 deletions(-)
Title: Advanced Graphics and Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment. Also includes
a graphics device for creating drawing onto images using pixel coordinates.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between magick versions 2.9.0 dated 2025-09-08 and 2.9.1 dated 2026-02-28
DESCRIPTION | 8 ++-- MD5 | 20 +++++------ NEWS | 3 + R/color.R | 2 - R/ggplot2.R | 6 +-- build/vignette.rds |binary inst/doc/intro.Rmd | 2 - inst/doc/intro.html | 91 ++++++++++++++++++++++++++-------------------------- man/color.Rd | 2 - man/image_ggplot.Rd | 4 +- vignettes/intro.Rmd | 2 - 11 files changed, 72 insertions(+), 68 deletions(-)
Title: Basic Functions in Knowledge Space Theory Using Matrix
Representation
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstMatrix' package
provides basic functionalities to generate, handle, and manipulate
knowledge structures and knowledge spaces. Opposed to the 'kst'
package, 'kstMatrix' uses matrix representations for knowledge
structures. Furthermore, 'kstMatrix' contains several knowledge spaces
developed by the research group around Cornelia Dowling through
querying experts.
Author: Cord Hockemeyer [aut, cre],
Peter Steiner [aut],
Wai Wong [aut]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstMatrix versions 2.2-1 dated 2026-01-23 and 2.3-0 dated 2026-02-28
kstMatrix-2.2-1/kstMatrix/man/kmbasis.kmsurmisefunction.Rd |only kstMatrix-2.2-1/kstMatrix/man/kmbasis.kmsurmiserelation.Rd |only kstMatrix-2.2-1/kstMatrix/man/kmbasis.matrix.Rd |only kstMatrix-2.3-0/kstMatrix/Changelog | 8 + kstMatrix-2.3-0/kstMatrix/DESCRIPTION | 8 - kstMatrix-2.3-0/kstMatrix/MD5 | 56 +++---- kstMatrix-2.3-0/kstMatrix/NAMESPACE | 3 kstMatrix-2.3-0/kstMatrix/R/kmbasis.R | 29 ++- kstMatrix-2.3-0/kstMatrix/R/kmbasis.kmsurmisefunction.R | 35 ++-- kstMatrix-2.3-0/kstMatrix/R/kmbasis.kmsurmiserelation.R | 4 kstMatrix-2.3-0/kstMatrix/R/kmbasis.matrix.R | 97 ++++++------- kstMatrix-2.3-0/kstMatrix/R/kmfamset.R | 8 - kstMatrix-2.3-0/kstMatrix/R/kmspace.R | 2 kstMatrix-2.3-0/kstMatrix/R/kmsrvalidate.R | 2 kstMatrix-2.3-0/kstMatrix/R/kmstructure.R | 4 kstMatrix-2.3-0/kstMatrix/R/kmtrivial.R | 2 kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.R | 25 --- kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.kmdata.R |only kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.kmfamset.R |only kstMatrix-2.3-0/kstMatrix/R/kmunionclosure.kmstructure.R |only kstMatrix-2.3-0/kstMatrix/R/plot.R | 3 kstMatrix-2.3-0/kstMatrix/inst/doc/kstMatrix.html | 28 +-- kstMatrix-2.3-0/kstMatrix/man/kmSF2basis.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmSR2basis.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmSRvalidate.Rd | 2 kstMatrix-2.3-0/kstMatrix/man/kmbasis.Rd | 77 +++++++++- kstMatrix-2.3-0/kstMatrix/man/kmspace.Rd | 2 kstMatrix-2.3-0/kstMatrix/man/kmstructure.Rd | 2 kstMatrix-2.3-0/kstMatrix/man/kmsurmisefunction.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmsurmiserelation.Rd | 4 kstMatrix-2.3-0/kstMatrix/man/kmunionclosure.Rd | 16 +- kstMatrix-2.3-0/kstMatrix/man/plot.Rd | 3 32 files changed, 248 insertions(+), 184 deletions(-)
Title: Consistent API for Hypothesis Testing
Description: Provides a consistent API for hypothesis testing built on
principles from 'Structure and Interpretation of Computer Programs':
data abstraction, closure (combining tests yields tests), and
higher-order functions (transforming tests). Implements z-tests,
Wald tests, likelihood ratio tests, Fisher's method for combining
p-values, and multiple testing corrections. Designed for use by
other packages that want to wrap their hypothesis tests in a
consistent interface.
Author: Alexander Towell [aut, cre]
Maintainer: Alexander Towell <lex@metafunctor.com>
Diff between hypothesize versions 0.10.0 dated 2025-12-11 and 0.11.0 dated 2026-02-28
hypothesize-0.10.0/hypothesize/man/dof.hypothesis_test.Rd |only hypothesize-0.10.0/hypothesize/man/is_significant_at.hypothesis_test.Rd |only hypothesize-0.10.0/hypothesize/man/pval.hypothesis_test.Rd |only hypothesize-0.10.0/hypothesize/man/test_stat.hypothesis_test.Rd |only hypothesize-0.11.0/hypothesize/DESCRIPTION | 12 hypothesize-0.11.0/hypothesize/MD5 | 53 hypothesize-0.11.0/hypothesize/NAMESPACE | 12 hypothesize-0.11.0/hypothesize/NEWS.md | 24 hypothesize-0.11.0/hypothesize/R/hypothesize.R | 618 ++++++++-- hypothesize-0.11.0/hypothesize/README.md | 22 hypothesize-0.11.0/hypothesize/build/vignette.rds |binary hypothesize-0.11.0/hypothesize/inst/doc/boolean-algebra.R |only hypothesize-0.11.0/hypothesize/inst/doc/boolean-algebra.Rmd |only hypothesize-0.11.0/hypothesize/inst/doc/boolean-algebra.html |only hypothesize-0.11.0/hypothesize/inst/doc/introduction.R | 6 hypothesize-0.11.0/hypothesize/inst/doc/introduction.Rmd | 16 hypothesize-0.11.0/hypothesize/inst/doc/introduction.html | 97 - hypothesize-0.11.0/hypothesize/man/adjust_pval.Rd | 8 hypothesize-0.11.0/hypothesize/man/complement_test.Rd |only hypothesize-0.11.0/hypothesize/man/dof.Rd | 13 hypothesize-0.11.0/hypothesize/man/hypothesize-package.Rd |only hypothesize-0.11.0/hypothesize/man/intersection_test.Rd |only hypothesize-0.11.0/hypothesize/man/invert_test.Rd |only hypothesize-0.11.0/hypothesize/man/is_significant_at.Rd | 17 hypothesize-0.11.0/hypothesize/man/lower.Rd |only hypothesize-0.11.0/hypothesize/man/print.confidence_set.Rd |only hypothesize-0.11.0/hypothesize/man/print.hypothesis_test.Rd | 6 hypothesize-0.11.0/hypothesize/man/pval.Rd | 13 hypothesize-0.11.0/hypothesize/man/score_test.Rd |only hypothesize-0.11.0/hypothesize/man/test_stat.Rd | 13 hypothesize-0.11.0/hypothesize/man/union_test.Rd |only hypothesize-0.11.0/hypothesize/man/upper.Rd |only hypothesize-0.11.0/hypothesize/man/wald_test.Rd | 54 hypothesize-0.11.0/hypothesize/tests/testthat/test-hypothesis-tests.R | 427 ++++++ hypothesize-0.11.0/hypothesize/vignettes/boolean-algebra.Rmd |only hypothesize-0.11.0/hypothesize/vignettes/introduction.Rmd | 16 36 files changed, 1223 insertions(+), 204 deletions(-)
Title: Compute Analytic Hierarchy Process
Description: Compute a tree level hierarchy, judgment matrix, consistency index and ratio, priority vectors, hierarchic synthesis and rank. Based on the book entitled "Models, Methods, Concepts and Applications of the Analytic Hierarchy Process" by Saaty and Vargas (2012, ISBN 978-1-4614-3597-6).
Author: Luciane Ferreira Alcoforado [aut, cre],
Lyncoln Sousa [aut],
Orlando Celso Longo [aut],
Alessandra Simao [ctb],
Steven Dutt Ross [ctb],
Leonardo Filgueira [ctb]
Maintainer: Luciane Ferreira Alcoforado <lucianea@id.uff.br>
Diff between AHPWR versions 0.1.0 dated 2022-12-06 and 0.1.2 dated 2026-02-28
AHPWR-0.1.0/AHPWR/tests |only AHPWR-0.1.2/AHPWR/DESCRIPTION | 12 AHPWR-0.1.2/AHPWR/MD5 | 51 AHPWR-0.1.2/AHPWR/NAMESPACE | 6 AHPWR-0.1.2/AHPWR/R/ahp_s.R | 2 AHPWR-0.1.2/AHPWR/R/flow_chart-OLD.R |only AHPWR-0.1.2/AHPWR/R/flow_chart.R | 175 +-- AHPWR-0.1.2/AHPWR/R/hello.R |only AHPWR-0.1.2/AHPWR/R/ler.R | 58 - AHPWR-0.1.2/AHPWR/R/matrix_ahp-OLD.R |only AHPWR-0.1.2/AHPWR/R/matrix_ahp.R | 70 - AHPWR-0.1.2/AHPWR/R/xlsx_ahp.R | 67 - AHPWR-0.1.2/AHPWR/build/vignette.rds |binary AHPWR-0.1.2/AHPWR/inst/doc/Intro_to_AHP.R | 4 AHPWR-0.1.2/AHPWR/inst/doc/Intro_to_AHP.Rmd | 2 AHPWR-0.1.2/AHPWR/inst/doc/Intro_to_AHP.html | 1378 ++++++++++++--------------- AHPWR-0.1.2/AHPWR/man/ahp_s.Rd | 2 AHPWR-0.1.2/AHPWR/man/autoVetor.Rd | 52 - AHPWR-0.1.2/AHPWR/man/calcula_prioridades.Rd | 40 AHPWR-0.1.2/AHPWR/man/flow_chart.Rd | 82 - AHPWR-0.1.2/AHPWR/man/formata_tabela.Rd | 44 AHPWR-0.1.2/AHPWR/man/ler.Rd | 57 - AHPWR-0.1.2/AHPWR/man/matrix_ahp.Rd | 72 - AHPWR-0.1.2/AHPWR/man/matriz_julgamento.Rd | 48 AHPWR-0.1.2/AHPWR/man/normaliza.Rd | 50 AHPWR-0.1.2/AHPWR/man/transforma_tabela.Rd | 50 AHPWR-0.1.2/AHPWR/man/xlsx_ahp.Rd | 70 - AHPWR-0.1.2/AHPWR/vignettes/Intro_to_AHP.Rmd | 2 28 files changed, 1160 insertions(+), 1234 deletions(-)
Title: Inferring Age-Dependent Disease Topic from Diagnosis Data
Description: We propose an age-dependent topic modelling (ATM) model,
providing a low-rank representation of longitudinal records of
hundreds of distinct diseases in large electronic health record data sets. The model
assigns to each individual topic weights for several disease topics;
each disease topic reflects a set of diseases that tend to co-occur as
a function of age, quantified by age-dependent topic loadings for each
disease. The model assumes that for each disease diagnosis, a topic is
sampled based on the individual’s topic weights (which sum to 1 across
topics, for a given individual), and a disease is sampled based on the
individual’s age and the age-dependent topic loadings (which sum to 1
across diseases, for a given topic at a given age). The model
generalises the Latent Dirichlet Allocation (LDA) model by allowing
topic loadings for each topic to vary with age.
References: Jiang (2023) <doi:10.1038/s41588-023-01522-8>.
Author: Xilin Jiang [aut, cre]
Maintainer: Xilin Jiang <jiangxilin1@gmail.com>
Diff between AgeTopicModels versions 0.1.0 dated 2025-10-21 and 0.3.0 dated 2026-02-28
DESCRIPTION | 11 - MD5 | 14 - NEWS.md | 7 R/ATM_inference.R | 329 ++++++++++++++++++++++++---------------- README.md | 10 - data/HES_age_example.rda |binary data/HES_icd10_example.rda |binary tests/testthat/test-inference.R | 34 ++++ 8 files changed, 263 insertions(+), 142 deletions(-)
More information about AgeTopicModels at CRAN
Permanent link
Title: Multivariate Random Forest with Compositional Responses
Description: Multivariate random forests with compositional responses and Euclidean predictors is performed. The compositional data are first transformed using the additive log-ratio transformation, or the alpha-transformation of Tsagris, Preston and Wood (2011), <doi:10.48550/arXiv.1106.1451>, and then the multivariate random forest of Rahman R., Otridge J. and Pal R. (2017), <doi:10.1093/bioinformatics/btw765>, is applied.
Author: Michail Tsagris [aut, cre],
Christos Adam [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between CompositionalRF versions 1.4 dated 2025-09-07 and 1.6 dated 2026-02-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/alfa.comp.rf.R | 2 +- R/cv.alfacomprf.R | 6 +++--- man/CompositionalRF-package.Rd | 4 ++-- src/mrf.cpp | 4 ++-- 6 files changed, 17 insertions(+), 17 deletions(-)
More information about CompositionalRF at CRAN
Permanent link
Title: Sumerian Cuneiform Text Analysis
Description: Provides functions for converting transliterated Sumerian texts to sign names and cuneiform characters,
creating and querying dictionaries, analyzing the structure of
Sumerian words, and creating translations. Includes a built-in dictionary and supports both
forward lookup (Sumerian to English) and reverse lookup (English to
Sumerian).
Author: Robin Wellmann [aut, cre]
Maintainer: Robin Wellmann <ro.wellmann@gmail.com>
Diff between sumer versions 1.1.0 dated 2026-02-18 and 1.2.0 dated 2026-02-28
sumer-1.1.0/sumer/man/sumer-package.Rd |only sumer-1.2.0/sumer/DESCRIPTION | 16 - sumer-1.2.0/sumer/MD5 | 56 +++-- sumer-1.2.0/sumer/NAMESPACE | 5 sumer-1.2.0/sumer/R/extract_skeleton_entries.R |only sumer-1.2.0/sumer/R/guess_substr_info.R |only sumer-1.2.0/sumer/R/init_substr_info.R |only sumer-1.2.0/sumer/R/look_up.R | 15 + sumer-1.2.0/sumer/R/mark_ngrams.R | 4 sumer-1.2.0/sumer/R/mark_skeleton_entries.R |only sumer-1.2.0/sumer/R/ngram_frequencies.R | 118 +----------- sumer-1.2.0/sumer/R/plot_sign_grammar.R | 32 ++- sumer-1.2.0/sumer/R/sign_grammar.R | 11 - sumer-1.2.0/sumer/R/skeleton.R | 215 ++++++++-------------- sumer-1.2.0/sumer/R/substr_position.R |only sumer-1.2.0/sumer/R/translate.R |only sumer-1.2.0/sumer/R/zzz.R | 2 sumer-1.2.0/sumer/build |only sumer-1.2.0/sumer/inst/doc |only sumer-1.2.0/sumer/man/extract_skeleton_entries.Rd |only sumer-1.2.0/sumer/man/guess_substr_info.Rd |only sumer-1.2.0/sumer/man/init_substr_info.Rd |only sumer-1.2.0/sumer/man/look_up.Rd | 3 sumer-1.2.0/sumer/man/make_dictionary.Rd | 2 sumer-1.2.0/sumer/man/mark_ngrams.Rd | 4 sumer-1.2.0/sumer/man/mark_skeleton_entries.Rd |only sumer-1.2.0/sumer/man/ngram_frequencies.Rd | 8 sumer-1.2.0/sumer/man/plot_sign_grammar.Rd | 5 sumer-1.2.0/sumer/man/sign_grammar.Rd | 4 sumer-1.2.0/sumer/man/skeleton.Rd | 75 +++---- sumer-1.2.0/sumer/man/substr_position.Rd |only sumer-1.2.0/sumer/man/translate.Rd |only sumer-1.2.0/sumer/src |only sumer-1.2.0/sumer/vignettes |only 34 files changed, 261 insertions(+), 314 deletions(-)
Title: Data Base Backend for 'mlr3'
Description: Extends the 'mlr3' package with a backend to transparently
work with databases such as 'SQLite', 'DuckDB', 'MySQL', 'MariaDB', or
'PostgreSQL'. The package provides three additional backends:
'DataBackendDplyr' relies on the abstraction of package 'dbplyr' to
interact with most DBMS. 'DataBackendDuckDB' operates on 'DuckDB' data
bases and also on Apache Parquet files. 'DataBackendPolars' operates on
'Polars' data frames.
Author: Michel Lang [aut] ,
Lona Koers [aut],
Marc Becker [cre, aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3db versions 0.7.0 dated 2025-10-06 and 0.7.1 dated 2026-02-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ tests/testthat/test_train_predict_dplyr.R | 2 +- tests/testthat/test_train_predict_duckdb.R | 2 +- tests/testthat/test_train_predict_polars.R | 2 +- 6 files changed, 16 insertions(+), 12 deletions(-)
Title: Tools to Manage a Parametric Function that Describes Phenology
and More
Description: Functions used to fit and test the phenology of species based on counts. Based on Girondot, M. (2010) <doi:10.3354/esr00292> for the phenology function, Girondot, M. (2017) <doi:10.1016/j.ecolind.2017.05.063> for the convolution of negative binomial, Girondot, M. and Rizzo, A. (2015) <doi:10.2993/etbi-35-02-337-353.1> for Bayesian estimate, Pfaller JB, ..., Girondot M (2019) <doi:10.1007/s00227-019-3545-x> for tag-loss estimate, Hancock J, ..., Girondot M (2019) <doi:10.1016/j.ecolmodel.2019.04.013> for nesting history, Laloe J-O, ..., Girondot M, Hays GC (2020) <doi:10.1007/s00227-020-03686-x> for aggregating several seasons.
Author: Marc Girondot [aut, cre]
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between phenology versions 2025.11.12 dated 2025-11-12 and 2026.2.28 dated 2026-02-28
DESCRIPTION | 8 ++-- MD5 | 22 +++++------ NEWS | 5 ++ R/add_phenology.R | 2 + R/phenology-package.R | 8 ++-- R/phenology_MHmcmc.R | 5 ++ R/plot.phenology.R | 92 ++++++++++++++++++++++++++++++++--------------- R/summary.phenology.R | 24 ++++++++++-- man/figures/imgfile.png |binary man/phenology-package.Rd | 8 ++-- man/phenology_MHmcmc.Rd | 5 ++ man/plot.phenology.Rd | 7 ++- 12 files changed, 124 insertions(+), 62 deletions(-)
Title: Tools for Various R Functions Helpers
Description: Contains miscellaneous functions useful for managing 'NetCDF' files (see <https://en.wikipedia.org/wiki/NetCDF>), get moon phase and time for sun rise and fall, tide level, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot [aut, cre]
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between HelpersMG versions 2025.12.22 dated 2025-12-23 and 2026.2.28 dated 2026-02-28
DESCRIPTION | 8 +++---- MD5 | 38 +++++++++++++++++++------------------ NAMESPACE | 1 NEWS | 3 +- R/HelpersMG-package.R | 4 +-- R/Probability_Best_Model_WAIC.R |only R/extractAIC.R | 2 + R/fitdistrquantiles.R | 2 + R/flexit.R | 2 + R/sysdata.rda |binary inst/shiny/cutter/ui.R | 2 - man/ExtractAIC.glm.Rd | 3 ++ man/FormatCompareAIC.Rd | 1 man/HelpersMG-package.Rd | 4 +-- man/Probability_Best_Model_WAIC.Rd |only man/compare_AIC.Rd | 1 man/compare_AICc.Rd | 1 man/compare_BIC.Rd | 1 man/figures/TB.png |binary man/fitdistrquantiles.Rd | 2 + man/flexit.Rd | 2 + 21 files changed, 49 insertions(+), 28 deletions(-)
Title: 'Rcpp' Integration for Numerical Computing Libraries
Description: A collection of open source libraries for numerical computing
(numerical integration, optimization, etc.) and their integration with
'Rcpp'.
Author: Yixuan Qiu [aut, cre],
Ralf Stubner [ctb] ,
Sreekumar Balan [aut] ,
Matt Beall [aut] ,
Mark Sauder [aut] ,
Naoaki Okazaki [aut] ,
Thomas Hahn [aut]
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between RcppNumerical versions 0.6-0 dated 2023-09-06 and 0.7-0 dated 2026-02-28
DESCRIPTION | 11 MD5 | 54 README.md | 287 +++ build/vignette.rds |binary inst/AUTHORS | 2 inst/NEWS.Rd | 25 inst/doc/introduction.R | 21 inst/doc/introduction.Rmd | 289 +++- inst/doc/introduction.html | 867 +++++++----- inst/include/Func.h | 6 inst/include/RcppNumerical.h | 5 inst/include/integration/wrapper.h | 115 + inst/include/optimization/LBFGS.h | 12 inst/include/optimization/LBFGSB.h | 2 inst/include/optimization/LBFGSpp/BFGSMat.h | 138 + inst/include/optimization/LBFGSpp/BKLDLT.h | 2 inst/include/optimization/LBFGSpp/Cauchy.h | 2 inst/include/optimization/LBFGSpp/LineSearchBacktracking.h | 3 inst/include/optimization/LBFGSpp/LineSearchBracketing.h | 11 inst/include/optimization/LBFGSpp/LineSearchMoreThuente.h | 429 ++++- inst/include/optimization/LBFGSpp/LineSearchNocedalWright.h | 11 inst/include/optimization/LBFGSpp/Param.h | 2 inst/include/optimization/LBFGSpp/SubspaceMin.h | 2 inst/include/optimization/wrapper.h | 44 src/cuhre/rcpp_stop.h |only src/cuhre/stddecl.h | 6 src/fastLR.cpp | 4 src/rcpp_stop.cpp |only vignettes/introduction.Rmd | 289 +++- 29 files changed, 1955 insertions(+), 684 deletions(-)
Title: Fast, Compact Iterators and Tools
Description: A fresh take on iterators in R. Designed to be cross-compatible with the 'iterators' package, but using the 'nextOr' method will offer better performance as well as more compact code. With batteries included: includes a collection of iterator constructors and combinators ported and refined from the 'iterators', 'itertools', and 'itertools2' packages.
Author: Peter Meilstrup [cre, aut, cph],
Folashade Daniel [aut],
Revolution Analytics [aut, cph],
Steve Weston [aut, cph],
John A. Ramey [aut, cph],
Kayla Schaefer [aut],
Hadley Wickham [aut]
Maintainer: Peter Meilstrup <peter.meilstrup@gmail.com>
Diff between iterors versions 1.0 dated 2023-05-18 and 1.0.1 dated 2026-02-28
iterors-1.0.1/iterors/DESCRIPTION | 10 iterors-1.0.1/iterors/MD5 | 102 +- iterors-1.0.1/iterors/NAMESPACE | 16 iterors-1.0.1/iterors/NEWS.md | 9 iterors-1.0.1/iterors/R/iRNGStream.R | 20 iterors-1.0.1/iterors/R/icombinations.R | 6 iterors-1.0.1/iterors/R/icount.R | 30 iterors-1.0.1/iterors/R/ienumerate.R | 12 iterors-1.0.1/iterors/R/igrid.R | 5 iterors-1.0.1/iterors/R/ipermutations.R | 5 iterors-1.0.1/iterors/R/ireadBin.R | 8 iterors-1.0.1/iterors/R/ireadLines.R | 15 iterors-1.0.1/iterors/R/ireaddf.R | 8 iterors-1.0.1/iterors/R/irecord.R | 12 iterors-1.0.1/iterors/R/iseq.R | 16 iterors-1.0.1/iterors/R/itabulate.R | 6 iterors-1.0.1/iterors/R/iunique.R | 13 iterors-1.0.1/iterors/R/rng.R | 61 + iterors-1.0.1/iterors/README.md | 32 iterors-1.0.1/iterors/build/vignette.rds |binary iterors-1.0.1/iterors/inst/doc/README.R | 26 iterors-1.0.1/iterors/inst/doc/README.Rmd | 4 iterors-1.0.1/iterors/inst/doc/README.html | 255 ++++--- iterors-1.0.1/iterors/inst/doc/categories.Rmd | 41 - iterors-1.0.1/iterors/inst/doc/categories.html | 278 +++++--- iterors-1.0.1/iterors/inst/doc/cross-reference.Rmd | 2 iterors-1.0.1/iterors/inst/doc/cross-reference.html | 49 - iterors-1.0.1/iterors/inst/doc/iterors.html | 287 ++++---- iterors-1.0.1/iterors/inst/doc/writing.html | 695 +++++++++++++------- iterors-1.0.1/iterors/man/i_RNGStream.Rd |only iterors-1.0.1/iterors/man/i_combinations.Rd |only iterors-1.0.1/iterors/man/i_count.Rd |only iterors-1.0.1/iterors/man/i_dedup.Rd |only iterors-1.0.1/iterors/man/i_div.Rd |only iterors-1.0.1/iterors/man/i_enumerate.Rd | 11 iterors-1.0.1/iterors/man/i_grid.Rd |only iterors-1.0.1/iterors/man/i_permutations.Rd |only iterors-1.0.1/iterors/man/i_read.table.Rd |only iterors-1.0.1/iterors/man/i_readBin.Rd |only iterors-1.0.1/iterors/man/i_readLines.Rd |only iterors-1.0.1/iterors/man/i_readdf.Rd |only iterors-1.0.1/iterors/man/i_rle.Rd | 2 iterors-1.0.1/iterors/man/i_seq.Rd |only iterors-1.0.1/iterors/man/i_tabulate.Rd |only iterors-1.0.1/iterors/man/i_unique.Rd | 2 iterors-1.0.1/iterors/man/makeIwrapper.Rd | 22 iterors-1.0.1/iterors/man/r_to_py.iteror.Rd | 2 iterors-1.0.1/iterors/man/record.Rd | 5 iterors-1.0.1/iterors/man/rng.Rd | 123 +++ iterors-1.0.1/iterors/vignettes/README.Rmd | 4 iterors-1.0.1/iterors/vignettes/categories.Rmd | 41 - iterors-1.0.1/iterors/vignettes/cross-reference.Rmd | 2 iterors-1.0/iterors/man/iRNGStream.Rd |only iterors-1.0/iterors/man/icombinations.Rd |only iterors-1.0/iterors/man/icount.Rd |only iterors-1.0/iterors/man/idedup.Rd |only iterors-1.0/iterors/man/idiv.Rd |only iterors-1.0/iterors/man/igrid.Rd |only iterors-1.0/iterors/man/ipermutations.Rd |only iterors-1.0/iterors/man/iread.table.Rd |only iterors-1.0/iterors/man/ireadBin.Rd |only iterors-1.0/iterors/man/ireadLines.Rd |only iterors-1.0/iterors/man/ireaddf.Rd |only iterors-1.0/iterors/man/iseq.Rd |only iterors-1.0/iterors/man/itabulate.Rd |only 65 files changed, 1470 insertions(+), 767 deletions(-)
Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Ross Bennett [ctb],
Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between xts versions 0.14.1 dated 2024-10-15 and 0.14.2 dated 2026-02-28
xts-0.14.1/xts/src/subset.old.c |only xts-0.14.1/xts/src/xts.c |only xts-0.14.2/xts/DESCRIPTION | 6 xts-0.14.2/xts/MD5 | 45 +++--- xts-0.14.2/xts/NEWS.md | 22 +++ xts-0.14.2/xts/R/plot.R | 21 +-- xts-0.14.2/xts/R/rollapply.xts.R | 17 ++ xts-0.14.2/xts/README.md | 6 xts-0.14.2/xts/build/vignette.rds |binary xts-0.14.2/xts/inst/doc/xts-faq.pdf |binary xts-0.14.2/xts/inst/doc/xts.pdf |binary xts-0.14.2/xts/inst/include/xts.h | 7 - xts-0.14.2/xts/inst/tinytest/test-endpoints.R | 3 xts-0.14.2/xts/inst/tinytest/test-rollapply.R |only xts-0.14.2/xts/src/attr.c | 182 ++++++++++---------------- xts-0.14.2/xts/src/endpoints.c | 145 ++++++++++---------- xts-0.14.2/xts/src/extract_col.c | 4 xts-0.14.2/xts/src/init.c | 1 xts-0.14.2/xts/src/isXts.c | 22 +-- xts-0.14.2/xts/src/merge.c | 8 - xts-0.14.2/xts/src/na.c | 2 xts-0.14.2/xts/src/rbind.c | 6 xts-0.14.2/xts/src/startofyear.c | 20 +- xts-0.14.2/xts/src/subset.c | 16 +- xts-0.14.2/xts/src/unique.time.c | 6 25 files changed, 263 insertions(+), 276 deletions(-)
Title: Wrapper for MUMPS Library
Description: Some basic features of 'MUMPS' (Multifrontal Massively Parallel
sparse direct Solver) are wrapped in a class whose methods can be used
for sequentially solving a sparse linear system (symmetric or not)
with one or many right hand sides (dense or sparse).
There is a possibility to do separately symbolic analysis,
LU (or LDL^t) factorization and system solving.
Third part ordering libraries are included and can be used: 'PORD', 'METIS', 'SCOTCH'.
'MUMPS' method was first described in Amestoy et al. (2001) <doi:10.1137/S0895479899358194>
and Amestoy et al. (2006) <doi:10.1016/j.parco.2005.07.004>.
Author: Serguei Sokol [aut, cre],
Emmanuel Agullo [ctb],
Patrick Amestoy [ctb, cph],
Maurice Bremond [ctb],
Alfredo Buttari [ctb],
Philippe Combes [ctb],
Marie Durand [ctb],
Aurelia Fevre [ctb],
Abdou Guermouche [ctb],
Guillaume Joslin [ctb],
Jacko Koster [c [...truncated...]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between rmumps versions 5.2.1-36 dated 2025-12-12 and 5.2.1-37 dated 2026-02-28
DESCRIPTION | 9 MD5 | 155 ++++++------- NEWS | 114 +++++---- inst/COPYRIGHTS | 2 inst/include/dmumps_c.h | 23 + inst/include/rcpp_errwarn.h |only inst/include/rmumps.h | 2 man/rmumps-package.Rd | 2 src/Makevars | 3 src/Makevars.seq | 3 src/RcppExports.cpp | 14 - src/lib/MUMPS_5.2.1/PORD/include/macros.h | 11 src/lib/MUMPS_5.2.1/PORD/lib/bucket.c | 10 src/lib/MUMPS_5.2.1/PORD/lib/ddbisect.c | 40 +-- src/lib/MUMPS_5.2.1/PORD/lib/ddcreate.c | 28 +- src/lib/MUMPS_5.2.1/PORD/lib/gbipart.c | 12 - src/lib/MUMPS_5.2.1/PORD/lib/gbisect.c | 40 +-- src/lib/MUMPS_5.2.1/PORD/lib/gelim.c | 90 +++---- src/lib/MUMPS_5.2.1/PORD/lib/graph.c | 14 - src/lib/MUMPS_5.2.1/PORD/lib/interface.c | 36 +-- src/lib/MUMPS_5.2.1/PORD/lib/minpriority.c | 26 +- src/lib/MUMPS_5.2.1/PORD/lib/multisector.c | 8 src/lib/MUMPS_5.2.1/PORD/lib/nestdiss.c | 8 src/lib/MUMPS_5.2.1/PORD/lib/symbfac.c | 16 - src/lib/MUMPS_5.2.1/PORD/lib/tree.c | 20 - src/lib/MUMPS_5.2.1/src/mumps_common.h | 3 src/lib/MUMPS_5.2.1/src/mumps_io.c | 16 - src/lib/MUMPS_5.2.1/src/mumps_io_thread.c | 2 src/lib/MUMPS_5.2.1/src/mumps_metis64.c | 2 src/lib/metis-5.1.0/GKlib/b64.c | 2 src/lib/metis-5.1.0/GKlib/csr.c | 8 src/lib/metis-5.1.0/GKlib/error.c | 8 src/lib/metis-5.1.0/GKlib/fkvkselect.c | 8 src/lib/metis-5.1.0/GKlib/getopt.c | 26 +- src/lib/metis-5.1.0/GKlib/gk_macros.h | 19 - src/lib/metis-5.1.0/GKlib/gkregex.c | 2 src/lib/metis-5.1.0/GKlib/graph.c | 18 - src/lib/metis-5.1.0/GKlib/mcore.c | 16 - src/lib/metis-5.1.0/GKlib/memory.c | 8 src/lib/metis-5.1.0/GKlib/pdb.c | 24 +- src/lib/metis-5.1.0/libmetis/balance.c | 30 +- src/lib/metis-5.1.0/libmetis/checkgraph.c | 18 - src/lib/metis-5.1.0/libmetis/coarsen.c | 18 - src/lib/metis-5.1.0/libmetis/compress.c | 6 src/lib/metis-5.1.0/libmetis/contig.c | 18 - src/lib/metis-5.1.0/libmetis/debug.c | 8 src/lib/metis-5.1.0/libmetis/fm.c | 28 +- src/lib/metis-5.1.0/libmetis/initpart.c | 20 - src/lib/metis-5.1.0/libmetis/kmetis.c | 2 src/lib/metis-5.1.0/libmetis/kwayfm.c | 56 ++-- src/lib/metis-5.1.0/libmetis/mesh.c | 2 src/lib/metis-5.1.0/libmetis/metislib.h | 3 src/lib/metis-5.1.0/libmetis/minconn.c | 28 +- src/lib/metis-5.1.0/libmetis/mincover.c | 6 src/lib/metis-5.1.0/libmetis/ometis.c | 6 src/lib/metis-5.1.0/libmetis/options.c | 178 +++++++-------- src/lib/metis-5.1.0/libmetis/parmetis.c | 14 - src/lib/metis-5.1.0/libmetis/pmetis.c | 2 src/lib/metis-5.1.0/libmetis/separator.c | 4 src/lib/metis-5.1.0/libmetis/sfm.c | 18 - src/lib/metis-5.1.0/libmetis/stat.c | 16 - src/lib/metis-5.1.0/libmetis/timing.c | 28 +- src/lib/metis-5.1.0/libmetis/wspace.c | 2 src/lib/scotch_6.0.9/src/libscotch/common.h | 3 src/lib/scotch_6.0.9/src/libscotch/common_error.c | 4 src/lib/scotch_6.0.9/src/libscotch/dummysizes.c | 16 - src/lib/scotch_6.0.9/src/libscotch/library_errcom.c | 4 src/lib/scotch_6.0.9/src/libscotch/library_error.c | 4 src/lib/scotch_6.0.9/src/libscotch/library_error_exit.c | 4 src/lib/scotch_6.0.9/src/libscotch/mesh_coarsen.c | 12 - src/lib/scotch_6.0.9/src/libscotch/parser_ll.c | 2 src/lib/scotch_6.0.9/src/libscotch/parser_yy.c | 26 +- src/lib/scotch_6.0.9/src/libscotch/vdgraph_separate_df.c | 2 src/lib/scotch_6.0.9/src/libscotch/vmesh_separate_fm.c | 6 src/lib/scotch_6.0.9/src/libscotch/wgraph_part_gg.c | 4 src/lib/scotch_6.0.9/src/libscotch/wgraph_part_gp.c | 4 src/rmumps_module.cpp | 20 + tests/testthat.R | 4 tests/testthat/test_rmumps.R | 2 79 files changed, 760 insertions(+), 716 deletions(-)
Title: Partial Least Squares Regression for Cox Models and Related
Techniques
Description: Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings <doi:10.1093/bioinformatics/btu660>, Bastien, P., Bertrand, F., Meyer N., Maumy-Bertrand, M. (2015), Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data, Bioinformatics, 31(3):397-404. Cross validation criteria were studied in <doi:10.48550/arXiv.1810.02962>, Bertrand, F., Bastien, Ph. and Maumy-Bertrand, M. (2018), Cross validating extensions of kernel, sparse or regular partial least squares regression models to censored data.
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between plsRcox versions 1.8.0 dated 2025-09-14 and 1.8.1 dated 2026-02-28
DESCRIPTION | 12 ++-- MD5 | 12 ++-- NAMESPACE | 5 + R/plsRcox-package.R | 5 - README.md | 140 +++++++++++++++++++------------------------------ build/partial.rdb |binary man/plsRcox-package.Rd | 4 - 7 files changed, 74 insertions(+), 104 deletions(-)