Title: Dynamic Relational Event Analysis and Modeling
Description: A set of tools for relational and event analysis, including two- and one-mode network brokerage and structural measures, and helper functions optimized for relational event analysis with large datasets, including creating relational risk sets, computing network statistics, estimating relational event models, and simulating relational event sequences. For more information on relational event models, see Butts (2008) <doi:10.1111/j.1467-9531.2008.00203.x>, Lerner and Lomi (2020) <doi:10.1017/nws.2019.57>, Bianchi et al. (2024) <doi:10.1146/annurev-statistics-040722-060248>, and Butts et al. (2023) <doi:10.1017/nws.2023.9>. In terms of the structural measures in this package, see Leal (2025) <doi:10.1177/00491241251322517>, Burchard and Cornwell (2018) <doi:10.1016/j.socnet.2018.04.001>, and Fujimoto et al. (2018) <doi:10.1017/nws.2018.11>. This package was developed with support from the National Science Foundation’s (NSF) Human Networks and Data [...truncated...]
Author: Kevin A. Carson [aut, cre] ,
Diego F. Leal [aut]
Maintainer: Kevin A. Carson <kacarson@arizona.edu>
Diff between dream versions 1.0.1 dated 2026-02-07 and 1.1.1 dated 2026-03-25
dream-1.0.1/dream/R/npaths_deprecatedV100.R |only dream-1.0.1/dream/R/onemode_Constraint_deprecatedV100.R |only dream-1.0.1/dream/R/onemode_EffectiveSize_deprecatedV100.R |only dream-1.0.1/dream/R/onemode_PIB_deprecatedV100.R |only dream-1.0.1/dream/R/rem_dyadiccutoffhelp_deprecatedV100.R |only dream-1.0.1/dream/R/rem_exp_weights_deprecated.R |only dream-1.0.1/dream/R/rem_fourcyles_deprecatedV100.R |only dream-1.0.1/dream/R/rem_incomingsharedpartners_deprecatedV100.R |only dream-1.0.1/dream/R/rem_incomingtwopaths_deprecatedV100.R |only dream-1.0.1/dream/R/rem_logit_deprecatedV100.R |only dream-1.0.1/dream/R/rem_onemoderiskset_deprecatedV100.R |only dream-1.0.1/dream/R/rem_outgoingsharedpartners_deprecatedV100.R |only dream-1.0.1/dream/R/rem_outgoingtwopaths_deprecatedV100.R |only dream-1.0.1/dream/R/rem_reciprocity_deprecatedV100.R |only dream-1.0.1/dream/R/rem_repetition_deprecatedV100.R |only dream-1.0.1/dream/R/rem_senderindegree_deprecatedV100.R |only dream-1.0.1/dream/R/rem_senderoutdegree_deprecatedV100.R |only dream-1.0.1/dream/R/rem_simulate_deprecatedV100.R |only dream-1.0.1/dream/R/rem_stat_persistence_deprecatedV100.R |only dream-1.0.1/dream/R/rem_stat_preferential_attachment_deprecatedV100.R |only dream-1.0.1/dream/R/rem_stat_recency_deprecatedV100.R |only dream-1.0.1/dream/R/rem_targetindegree_deprecatedV100.R |only dream-1.0.1/dream/R/rem_targetoutdegree_deprecatedV100.R |only dream-1.0.1/dream/R/rem_triadic_deprecatedV100.R |only dream-1.0.1/dream/R/rem_twomoderiskset_deprecatedV100.R |only dream-1.0.1/dream/R/tm_EgoDisHomophily_deprecatedV100.R |only dream-1.0.1/dream/R/twomode_Constraint_deprecatedV100.R |only dream-1.0.1/dream/R/twomode_Degree_deprecatedV100.R |only dream-1.0.1/dream/R/twomode_Density_deprecatedV100.R |only dream-1.0.1/dream/R/twomode_EffectiveSize_deprecatedV100.R |only dream-1.0.1/dream/R/twomode_Redunancy_deprecatedV100.R |only dream-1.0.1/dream/R/twomode_homophilous4Cycles_deprecatedV100.R |only dream-1.0.1/dream/man/computeBCConstraint.Rd |only dream-1.0.1/dream/man/computeBCES.Rd |only dream-1.0.1/dream/man/computeBCRedund.Rd |only dream-1.0.1/dream/man/computeBurtsConstraint.Rd |only dream-1.0.1/dream/man/computeBurtsES.Rd |only dream-1.0.1/dream/man/computeFourCycles.Rd |only dream-1.0.1/dream/man/computeHomFourCycles.Rd |only dream-1.0.1/dream/man/computeISP.Rd |only dream-1.0.1/dream/man/computeITP.Rd |only dream-1.0.1/dream/man/computeLealBrokerage.Rd |only dream-1.0.1/dream/man/computeNPaths.Rd |only dream-1.0.1/dream/man/computeOSP.Rd |only dream-1.0.1/dream/man/computeOTP.Rd |only dream-1.0.1/dream/man/computePersistence.Rd |only dream-1.0.1/dream/man/computePrefAttach.Rd |only dream-1.0.1/dream/man/computeReceiverIndegree.Rd |only dream-1.0.1/dream/man/computeReceiverOutdegree.Rd |only dream-1.0.1/dream/man/computeRecency.Rd |only dream-1.0.1/dream/man/computeReciprocity.Rd |only dream-1.0.1/dream/man/computeRemDyadCut.Rd |only dream-1.0.1/dream/man/computeRepetition.Rd |only dream-1.0.1/dream/man/computeSenderIndegree.Rd |only dream-1.0.1/dream/man/computeSenderOutdegree.Rd |only dream-1.0.1/dream/man/computeTMDegree.Rd |only dream-1.0.1/dream/man/computeTMDens.Rd |only dream-1.0.1/dream/man/computeTMEgoDis.Rd |only dream-1.0.1/dream/man/computeTriads.Rd |only dream-1.0.1/dream/man/estimateREM.Rd |only dream-1.0.1/dream/man/processOMEventSeq.Rd |only dream-1.0.1/dream/man/processTMEventSeq.Rd |only dream-1.0.1/dream/man/remExpWeights.Rd |only dream-1.0.1/dream/man/simulateRESeq.Rd |only dream-1.1.1/dream/DESCRIPTION | 8 dream-1.1.1/dream/MD5 | 124 --- dream-1.1.1/dream/NAMESPACE | 48 - dream-1.1.1/dream/NEWS.md | 11 dream-1.1.1/dream/R/createriskset.R | 227 +++++ dream-1.1.1/dream/R/degreestatrem.R | 397 +++++++++ dream-1.1.1/dream/R/dream.R | 6 dream-1.1.1/dream/R/rem_dyadiccutoffhelp.R | 130 +++ dream-1.1.1/dream/R/rem_fourcyles.R | 265 ++++++ dream-1.1.1/dream/R/rem_reciprocity.R | 228 +++++ dream-1.1.1/dream/R/rem_repetition.R | 222 +++++ dream-1.1.1/dream/R/rem_stat_persistence.R | 177 ++++ dream-1.1.1/dream/R/rem_stat_preferential_attachment.R | 147 +++ dream-1.1.1/dream/R/rem_stat_recency.R | 220 +++++ dream-1.1.1/dream/R/remtriadicformations.R | 406 +++++++++- dream-1.1.1/dream/man/create_riskset.Rd | 4 dream-1.1.1/dream/man/create_riskset_constant.Rd |only dream-1.1.1/dream/man/dream.Rd | 6 dream-1.1.1/dream/man/dreamstats_degree.Rd |only dream-1.1.1/dream/man/dreamstats_dyadcut.Rd |only dream-1.1.1/dream/man/dreamstats_fourcycles.Rd |only dream-1.1.1/dream/man/dreamstats_persistence.Rd |only dream-1.1.1/dream/man/dreamstats_prefattachment.Rd |only dream-1.1.1/dream/man/dreamstats_recency.Rd |only dream-1.1.1/dream/man/dreamstats_reciprocity.Rd |only dream-1.1.1/dream/man/dreamstats_repetition.Rd |only dream-1.1.1/dream/man/dreamstats_triads.Rd |only dream-1.1.1/dream/man/remstats_degree.Rd | 6 dream-1.1.1/dream/man/remstats_dyadcut.Rd | 4 dream-1.1.1/dream/man/remstats_fourcycles.Rd | 6 dream-1.1.1/dream/man/remstats_persistence.Rd | 6 dream-1.1.1/dream/man/remstats_prefattachment.Rd | 6 dream-1.1.1/dream/man/remstats_recency.Rd | 6 dream-1.1.1/dream/man/remstats_reciprocity.Rd | 4 dream-1.1.1/dream/man/remstats_repetition.Rd | 6 dream-1.1.1/dream/man/remstats_triads.Rd | 6 100 files changed, 2505 insertions(+), 171 deletions(-)
Title: Client for the YouTube API
Description: Get comments posted on YouTube videos, information on how
many times a video has been liked, search for videos with particular
content, and much more. You can also scrape captions from a few
videos. To learn more about the YouTube API, see
<https://developers.google.com/youtube/v3/>.
Author: Gaurav Sood [aut, cre],
Kate Lyons [ctb],
John Muschelli [ctb]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between tuber versions 1.1.0 dated 2025-08-24 and 1.4.0 dated 2026-03-24
tuber-1.1.0/tuber/tests/testthat/test-get-all-comments.R |only tuber-1.1.0/tuber/tests/testthat/test-get-comment-threads.R |only tuber-1.1.0/tuber/tests/testthat/test-get-details.R |only tuber-1.1.0/tuber/tests/testthat/test-get-playlist-items.R |only tuber-1.1.0/tuber/tests/testthat/test-get-playlists.R |only tuber-1.1.0/tuber/tests/testthat/test-yt-search.R |only tuber-1.4.0/tuber/DESCRIPTION | 22 tuber-1.4.0/tuber/LICENSE | 2 tuber-1.4.0/tuber/MD5 | 295 +++-- tuber-1.4.0/tuber/NAMESPACE | 84 + tuber-1.4.0/tuber/NEWS.md | 128 ++ tuber-1.4.0/tuber/R/add_video_to_playlist.R | 10 tuber-1.4.0/tuber/R/caching.R |only tuber-1.4.0/tuber/R/change_playlist_title.R | 30 tuber-1.4.0/tuber/R/comments_write.R |only tuber-1.4.0/tuber/R/create_playlist.R | 7 tuber-1.4.0/tuber/R/delete_captions.R | 5 tuber-1.4.0/tuber/R/delete_channel_sections.R | 5 tuber-1.4.0/tuber/R/delete_comments.R | 5 tuber-1.4.0/tuber/R/delete_playlist_items.R | 5 tuber-1.4.0/tuber/R/delete_playlists.R | 5 tuber-1.4.0/tuber/R/delete_videos.R | 5 tuber-1.4.0/tuber/R/error_handling.R |only tuber-1.4.0/tuber/R/extended_endpoints.R |only tuber-1.4.0/tuber/R/get_all_channel_video_stats.R | 246 ++-- tuber-1.4.0/tuber/R/get_all_comments.R | 198 +-- tuber-1.4.0/tuber/R/get_captions.R | 36 tuber-1.4.0/tuber/R/get_channel_stats.R | 332 +++++- tuber-1.4.0/tuber/R/get_comment_threads.R | 157 ++- tuber-1.4.0/tuber/R/get_comments.R | 33 tuber-1.4.0/tuber/R/get_live_chat_messages.R |only tuber-1.4.0/tuber/R/get_playlist_item_ids.R | 20 tuber-1.4.0/tuber/R/get_playlist_item_videoids.R | 18 tuber-1.4.0/tuber/R/get_playlist_items.R | 141 ++ tuber-1.4.0/tuber/R/get_playlists.R | 29 tuber-1.4.0/tuber/R/get_related_videos.R | 64 - tuber-1.4.0/tuber/R/get_stats.R | 90 + tuber-1.4.0/tuber/R/get_subscriptions.R | 21 tuber-1.4.0/tuber/R/get_super_chat_events.R |only tuber-1.4.0/tuber/R/get_video_details.R | 318 ++++-- tuber-1.4.0/tuber/R/helper_functions.R |only tuber-1.4.0/tuber/R/insert_channel_banner.R |only tuber-1.4.0/tuber/R/list_abuse_report_reasons.R | 10 tuber-1.4.0/tuber/R/list_caption_tracks.R | 24 tuber-1.4.0/tuber/R/list_captions.R | 35 tuber-1.4.0/tuber/R/list_channel_activities.R | 47 tuber-1.4.0/tuber/R/list_channel_members.R |only tuber-1.4.0/tuber/R/list_channel_resources.R | 120 +- tuber-1.4.0/tuber/R/list_channel_sections.R | 10 tuber-1.4.0/tuber/R/list_channel_videos.R | 72 + tuber-1.4.0/tuber/R/list_guidecats.R | 14 tuber-1.4.0/tuber/R/list_langs.R | 5 tuber-1.4.0/tuber/R/list_my_videos.R | 1 tuber-1.4.0/tuber/R/list_regions.R | 7 tuber-1.4.0/tuber/R/list_videocats.R | 11 tuber-1.4.0/tuber/R/list_videos.R | 17 tuber-1.4.0/tuber/R/quota_management.R | 102 + tuber-1.4.0/tuber/R/read_sbv.R | 16 tuber-1.4.0/tuber/R/set_video_thumbnail.R |only tuber-1.4.0/tuber/R/tuber.R | 522 ++++++++-- tuber-1.4.0/tuber/R/unicode_utils.R | 229 +++- tuber-1.4.0/tuber/R/update_video_metadata.R | 34 tuber-1.4.0/tuber/R/upload_caption.R | 54 - tuber-1.4.0/tuber/R/upload_video.R | 34 tuber-1.4.0/tuber/R/utils.R |only tuber-1.4.0/tuber/R/yt_oauth.R | 47 tuber-1.4.0/tuber/R/yt_search.R | 93 + tuber-1.4.0/tuber/R/yt_topic_search.R | 3 tuber-1.4.0/tuber/README.md | 6 tuber-1.4.0/tuber/build/vignette.rds |binary tuber-1.4.0/tuber/inst/CITATION | 24 tuber-1.4.0/tuber/inst/doc/batch-processing-quota.R |only tuber-1.4.0/tuber/inst/doc/batch-processing-quota.Rmd |only tuber-1.4.0/tuber/inst/doc/batch-processing-quota.html |only tuber-1.4.0/tuber/inst/doc/emoji-analysis.R |only tuber-1.4.0/tuber/inst/doc/emoji-analysis.Rmd |only tuber-1.4.0/tuber/inst/doc/emoji-analysis.html |only tuber-1.4.0/tuber/inst/doc/emoji-handling.R |only tuber-1.4.0/tuber/inst/doc/emoji-handling.Rmd |only tuber-1.4.0/tuber/inst/doc/emoji-handling.html |only tuber-1.4.0/tuber/inst/doc/troubleshooting.R |only tuber-1.4.0/tuber/inst/doc/troubleshooting.Rmd |only tuber-1.4.0/tuber/inst/doc/troubleshooting.html |only tuber-1.4.0/tuber/inst/doc/tuber-ex.R | 16 tuber-1.4.0/tuber/inst/doc/tuber-ex.Rmd | 22 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tuber-1.4.0/tuber/man/get_cached_response.Rd |only tuber-1.4.0/tuber/man/get_captions.Rd | 3 tuber-1.4.0/tuber/man/get_channel_info_cached.Rd |only tuber-1.4.0/tuber/man/get_channel_sections.Rd |only tuber-1.4.0/tuber/man/get_channel_stats.Rd | 68 + tuber-1.4.0/tuber/man/get_comment_threads.Rd | 10 tuber-1.4.0/tuber/man/get_live_chat_messages.Rd |only tuber-1.4.0/tuber/man/get_live_streams.Rd |only tuber-1.4.0/tuber/man/get_playlist_items.Rd | 2 tuber-1.4.0/tuber/man/get_playlists.Rd | 3 tuber-1.4.0/tuber/man/get_premiere_info.Rd |only tuber-1.4.0/tuber/man/get_related_videos.Rd | 9 tuber-1.4.0/tuber/man/get_stats.Rd | 42 tuber-1.4.0/tuber/man/get_super_chat_events.Rd |only tuber-1.4.0/tuber/man/get_video_details.Rd | 83 + tuber-1.4.0/tuber/man/get_video_thumbnails.Rd |only tuber-1.4.0/tuber/man/handle_api_error.Rd |only tuber-1.4.0/tuber/man/handle_http_response.Rd |only tuber-1.4.0/tuber/man/handle_network_error.Rd |only tuber-1.4.0/tuber/man/has_emoji.Rd |only 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tuber-1.4.0/tuber/man/upload_video.Rd | 2 tuber-1.4.0/tuber/man/utils.Rd |only tuber-1.4.0/tuber/man/validate_channel_id.Rd |only tuber-1.4.0/tuber/man/validate_filter.Rd |only tuber-1.4.0/tuber/man/validate_language_code.Rd |only tuber-1.4.0/tuber/man/validate_max_results.Rd |only tuber-1.4.0/tuber/man/validate_part_parameter.Rd |only tuber-1.4.0/tuber/man/validate_playlist_id.Rd |only tuber-1.4.0/tuber/man/validate_region_code.Rd |only tuber-1.4.0/tuber/man/validate_rfc3339_date.Rd |only tuber-1.4.0/tuber/man/validate_video_id.Rd |only tuber-1.4.0/tuber/man/validate_youtube_params.Rd |only tuber-1.4.0/tuber/man/warn_deprecated.Rd |only tuber-1.4.0/tuber/man/with_retry.Rd |only tuber-1.4.0/tuber/tests/_covrpage.Rmd | 92 - tuber-1.4.0/tuber/tests/testthat/test-auth.R |only tuber-1.4.0/tuber/tests/testthat/test-basic-functionality.R | 18 tuber-1.4.0/tuber/tests/testthat/test-captions.R | 6 tuber-1.4.0/tuber/tests/testthat/test-channel-members.R |only tuber-1.4.0/tuber/tests/testthat/test-channels.R |only tuber-1.4.0/tuber/tests/testthat/test-comment-threads.R |only tuber-1.4.0/tuber/tests/testthat/test-comments-write.R |only tuber-1.4.0/tuber/tests/testthat/test-comments.R |only tuber-1.4.0/tuber/tests/testthat/test-emoji.R |only tuber-1.4.0/tuber/tests/testthat/test-get-related-videos.R | 6 tuber-1.4.0/tuber/tests/testthat/test-integration-ready.R | 335 ++++-- tuber-1.4.0/tuber/tests/testthat/test-list-channel-activities.R | 6 tuber-1.4.0/tuber/tests/testthat/test-list-channel-sections.R | 12 tuber-1.4.0/tuber/tests/testthat/test-live-chat.R |only tuber-1.4.0/tuber/tests/testthat/test-pagination-mocks.R | 34 tuber-1.4.0/tuber/tests/testthat/test-playlist-items.R |only tuber-1.4.0/tuber/tests/testthat/test-playlists.R |only tuber-1.4.0/tuber/tests/testthat/test-search.R |only tuber-1.4.0/tuber/tests/testthat/test-super-chat.R |only tuber-1.4.0/tuber/tests/testthat/test-thumbnails.R |only tuber-1.4.0/tuber/tests/testthat/test-videos.R |only tuber-1.4.0/tuber/tests/testthat/test-write-operations.R |only tuber-1.4.0/tuber/vignettes/batch-processing-quota.Rmd |only tuber-1.4.0/tuber/vignettes/emoji-analysis.Rmd |only tuber-1.4.0/tuber/vignettes/emoji-handling.Rmd |only tuber-1.4.0/tuber/vignettes/troubleshooting.Rmd |only tuber-1.4.0/tuber/vignettes/tuber-ex.Rmd | 22 208 files changed, 3364 insertions(+), 1371 deletions(-)
Title: Learning with Data on Riemannian Manifolds
Description: We provide a variety of algorithms for manifold-valued data, including Fréchet summaries, hypothesis testing, clustering, visualization, and other learning tasks. See Bhattacharya and Bhattacharya (2012) <doi:10.1017/CBO9781139094764> for general exposition to statistics on manifolds.
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between Riemann versions 0.1.6 dated 2025-09-26 and 0.1.7 dated 2026-03-24
DESCRIPTION | 11 +++++----- MD5 | 16 +++++++------- NAMESPACE | 6 ----- NEWS.md | 4 +++ R/auxiliary_ported.R | 52 ------------------------------------------------ R/basic_wasserstein.R | 5 +--- R/inference_test2wass.R | 6 ++--- R/package-Riemann.R | 2 - build/partial.rdb |binary 9 files changed, 25 insertions(+), 77 deletions(-)
Title: Principal Component Analysis for 'bigmemory' Matrices
Description: High performance principal component analysis routines
that operate directly on bigmemory::big.matrix() objects. The
package avoids materialising large matrices in memory by
streaming data through 'BLAS' and 'LAPACK' kernels and provides
helpers to derive scores, loadings, correlations, and
contribution diagnostics, including utilities that stream
results into 'bigmemory'-backed matrices for file-based
workflows. Additional interfaces expose 'scalable' singular value
decomposition, robust PCA, and robust SVD algorithms so that
users can explore large matrices while tempering the influence
of outliers. 'Scalable' principal component analysis is also implemented,
Elgamal, Yabandeh, Aboulnaga, Mustafa, and Hefeeda (2015)
<doi:10.1145/2723372.2751520>.
Author: Frederic Bertrand [aut, cre]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between bigPCAcpp versions 0.9.0 dated 2025-10-20 and 0.9.1 dated 2026-03-24
DESCRIPTION | 17 +- MD5 | 20 +- NEWS.md | 4 README.md | 52 ++++--- build/vignette.rds |binary inst/CITATION | 7 inst/doc/bigPCA-benchmarks.R | 24 +++ inst/doc/bigPCA-benchmarks.Rmd | 36 ++++- inst/doc/bigPCA-benchmarks.html | 284 +++++++++++++++++++++++----------------- inst/doc/bigPCAcpp.html | 10 - vignettes/bigPCA-benchmarks.Rmd | 36 ++++- 11 files changed, 314 insertions(+), 176 deletions(-)
Title: Partial Least Squares Regression for Beta Regression Models
Description: Provides Partial least squares Regression for (weighted) beta regression models (Bertrand 2013, <https://ojs-test.apps.ocp.math.cnrs.fr/index.php/J-SFdS/article/view/215>) and k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between plsRbeta versions 0.3.2 dated 2025-09-20 and 0.3.3 dated 2026-03-24
DESCRIPTION | 12 ++--- MD5 | 21 +++++----- NAMESPACE | 2 R/PLS_beta.R | 8 +-- R/PLS_beta_formula.R | 8 +-- R/PLS_beta_wvc.R | 6 +- R/predict.plsRbetamodel.R |only README.md | 87 ++++++++++++++---------------------------- build/vignette.rds |binary inst/doc/tn_Insights.html | 15 +++---- man/plsRbeta-package.Rd | 4 - man/predict.plsRbetamodel.Rd |only tests/testthat/test-predict.R |only 13 files changed, 72 insertions(+), 91 deletions(-)
Title: Stratified Medicine
Description: A toolkit for stratified medicine, subgroup identification, and precision medicine.
Current tools include (1) filtering models (reduce covariate space), (2) patient-level estimate
models (counterfactual patient-level quantities, such as the conditional average treatment effect),
(3) subgroup identification models (find subsets of patients with similar treatment effects),
and (4) treatment effect estimation and inference (for the overall population and discovered
subgroups). These tools can be customized and are directly used in PRISM
(patient response identifiers for stratified medicine; Jemielita and Mehrotra 2019
<doi:10.48550/arXiv.1912.03337>).
Author: Thomas Jemielita [aut, cre]
Maintainer: Thomas Jemielita <thomasjemielita@gmail.com>
Diff between StratifiedMedicine versions 1.0.5 dated 2022-03-29 and 1.0.7 dated 2026-03-24
DESCRIPTION | 19 MD5 | 129 +- NAMESPACE | 176 +- NEWS.md | 65 - R/PRISM.R | 1162 +++++++++--------- R/PRISM_train.R | 330 ++--- R/filter_train.R | 225 +-- R/generate_subgrp_data.R | 176 +- R/learners.R | 1709 +++++++++++++-------------- R/meta_learners.R | 834 ++++++------- R/param_combine.R | 268 ++-- R/param_est.R | 220 +-- R/ple_train.R | 460 +++---- R/plot.R | 379 +++--- R/plot_dependence.R | 411 +++--- R/plot_forest.R | 119 + R/plot_importance.R | 76 - R/plot_ple.R | 216 +-- R/plot_resample.R | 74 - R/plot_tree.R | 973 ++++++++------- R/pooler.R | 430 +++--- R/resampler_general.R | 626 +++++----- R/subgrp_stability.R | 196 +-- R/submod_train.R | 824 ++++++------- R/utils.R | 1288 ++++++++++---------- README.md | 314 ++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/SM_PRISM.R | 332 ++--- inst/doc/SM_PRISM.Rmd | 586 ++++----- inst/doc/SM_PRISM.html | 1799 ++++++++++++++++++----------- inst/doc/SM_User_Models.R | 345 ++--- inst/doc/SM_User_Models.Rmd | 449 +++---- inst/doc/SM_User_Models.html | 984 +++++++++------ man/PRISM.Rd | 724 +++++------ man/filter_train.Rd | 249 ++-- man/generate_subgrp_data.Rd | 52 man/param_combine.Rd | 54 man/param_est.Rd | 192 +-- man/ple_train.Rd | 290 ++-- man/plot.PRISM.Rd | 162 +- man/plot_dependence.Rd | 114 - man/plot_importance.Rd | 70 - man/plot_ple.Rd | 82 - man/plot_tree.Rd | 118 - man/predict.PRISM.Rd | 96 - man/predict.ple_train.Rd | 86 - man/predict.submod_train.Rd | 84 - man/submod_train.Rd | 476 +++---- man/summary.PRISM.Rd | 56 man/summary.submod_train.Rd | 52 tests/testthat.R | 8 tests/testthat/test-bootstrap_resampling.R |only tests/testthat/test-param_est.R | 200 +-- tests/testthat/test-ple_waterfall.R | 106 - tests/testthat/test-plot_ggparty.R | 698 +++++------ tests/testthat/test-plot_ggparty_pool.R | 318 ++--- tests/testthat/test-resampling.R | 100 - tests/testthat/test-submod_train.R | 568 ++++----- tests/testthat/test-submod_train_pool.R | 758 ++++++------ tests/testthat/test-submod_train_summary.R | 412 +++--- tests/testthat/test_filter_train.R | 160 +- tests/testthat/test_ple_train.R | 206 +-- tests/testthat/test_ple_train_A3.R | 270 ++-- vignettes/SM_PRISM.Rmd | 586 ++++----- vignettes/SM_User_Models.Rmd | 449 +++---- 66 files changed, 12480 insertions(+), 11510 deletions(-)
More information about StratifiedMedicine at CRAN
Permanent link
Title: Spatial Analysis with Misaligned Data Using Atom-Based
Regression Models
Description: Implements atom-based regression models (ABRM) for analyzing spatially
misaligned data. Provides functions for simulating misaligned spatial data,
preparing NIMBLE model inputs, running MCMC diagnostics, and providing results. All main functions return
S3 objects with print(), summary(), and plot() methods for intuitive result exploration.
Methods originally described in Mugglin et al. (2000) <doi:10.1080/01621459.2000.10474279>,
further investigated in Trevisani & Gelfand (2013), and applied in Nethery et al. (2023)
<doi:10.1101/2023.01.10.23284410>.
Author: Yunzhe Qian [aut, cre],
Rachel Nethery [aut],
Nancy Krieger [ctb] ,
Nykesha Johnson [ctb]
Maintainer: Yunzhe Qian <qyzanemos@gmail.com>
Diff between spatialAtomizeR versions 0.2.7 dated 2026-03-08 and 0.2.8 dated 2026-03-24
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 6 +++++- R/simulation.R | 11 ++--------- inst/doc/getting-started.R | 10 ++++++---- inst/doc/getting-started.Rmd | 10 ++++++---- inst/doc/getting-started.html | 14 ++++++++------ inst/extdata/abrm_vignette_results.rds |binary vignettes/getting-started.Rmd | 10 ++++++---- 9 files changed, 45 insertions(+), 40 deletions(-)
More information about spatialAtomizeR at CRAN
Permanent link
Title: Extended Inference for Lasso and Elastic-Net Regularized Cox and
Generalized Linear Models
Description: The c060 package provides additional functions to perform stability selection, model validation and parameter tuning for glmnet models.
Author: Martin Sill [aut],
Thomas Hielscher [aut],
Manuela Zucknick [aut],
Natalia Becker [aut],
Frederic Bertrand [cre]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between c060 versions 0.4-0 dated 2025-09-19 and 0.5-0 dated 2026-03-24
DESCRIPTION | 13 MD5 | 16 NEWS.md | 6 R/EPSGO.R | 14 R/peperr_glmnet.R | 69 ++ R/stabilityselection.R | 31 - README.md | 918 +---------------------------------- tests/testthat/test-glmnet-and-cox.R | 39 + tests/testthat/test-stability.R | 18 9 files changed, 197 insertions(+), 927 deletions(-)
Title: Generalized Multivariate Functional Additive Models
Description: Supply implementation to model generalized multivariate functional
data using Bayesian additive mixed models of R package 'bamlss' via a latent
Gaussian process (see Umlauf, Klein, Zeileis (2018)
<doi:10.1080/10618600.2017.1407325>).
Author: Nikolaus Umlauf [aut] ,
Alexander Volkmann [aut, cre]
Maintainer: Alexander Volkmann <alexandervolkmann8@gmail.com>
Diff between gmfamm versions 0.1.0 dated 2024-06-18 and 0.1.1 dated 2026-03-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 10 insertions(+), 6 deletions(-)
Title: Income Tax Calculations (UK)
Description: Income tax calculations for England, Northern Ireland and Wales. Estimate annual income tax within the different taxation bands at specified levels of both taxable income and the Personal Allowance, emulating the results obtained at <https://www.gov.uk/estimate-income-tax>. Calculate the standard Personal Allowance at various levels of taxable income. Estimate the personal allowance required to recoup a specified amount of income tax.
Author: Mark Eisler [aut, cre, cph]
Maintainer: Mark Eisler <mark@markeisler.com>
Diff between Fiscal versions 1.0.0 dated 2026-03-16 and 1.0.1 dated 2026-03-24
DESCRIPTION | 10 +- MD5 | 28 +++++--- NEWS.md |only R/allowance.R | 7 +- R/incometax.R | 16 ++-- R/tax_opts.R | 2 README.md | 8 ++ build/partial.rdb |binary build/vignette.rds |only inst |only man/Fiscal-package.Rd | 5 + man/allowance.Rd | 145 +++++++++++++++--------------------------- man/incometax.Rd | 170 ++++++++++++++++++++++++-------------------------- man/pers_allow.Rd | 35 ++++------ man/tax_opts.Rd | 14 ++-- vignettes |only 16 files changed, 201 insertions(+), 239 deletions(-)
Title: Bayesian Post-Estimation on the Mean Scale
Description: Computes Bayesian posterior distributions of predictions, marginal effects, and differences of marginal effects for various generalized linear models. Importantly, the posteriors are on the mean (response) scale, allowing for more natural interpretation than summaries on the link scale. Also, predictions and marginal effects of the count probabilities for Poisson and negative binomial models can be computed.
Author: David M. Dalenberg [aut, cre]
Maintainer: David M. Dalenberg <dalenbe2@gmail.com>
Diff between bayesMeanScale versions 0.2.1 dated 2025-01-08 and 0.2.2 dated 2026-03-24
DESCRIPTION | 6 MD5 | 40 ++--- NAMESPACE | 2 NEWS.md | 4 R/bayes-marg-effects.R | 120 ++++++++++++++- R/marg-model-data-continuous.R | 67 ++++++++ R/marg-model-data.R | 71 ++++++++ R/mean-pred.R | 106 +++++++++++++ build/vignette.rds |binary inst/doc/introduction.R | 8 - inst/doc/introduction.Rmd | 8 - inst/doc/introduction.html | 159 ++++++++++---------- man/bayesCountMargEffF.Rd | 2 man/bayesCountPredsF.Rd | 2 man/bayesMargEffF.Rd | 44 +++++ tests/testthat/test-bayes-count-marg-effects.R | 2 tests/testthat/test-bayes-count-preds.R | 2 tests/testthat/test-count-marg-effect-error-check.R | 2 tests/testthat/test-count-preds-error-check.R | 2 tests/testthat/test-marg-compare.R | 2 vignettes/introduction.Rmd | 8 - 21 files changed, 544 insertions(+), 113 deletions(-)
More information about bayesMeanScale at CRAN
Permanent link
Title: Degrees of Freedom and Statistical Inference for Partial Least
Squares Regression
Description: The plsdof package provides Degrees of Freedom estimates
for Partial Least Squares (PLS) Regression. Model selection for
PLS is based on various information criteria (aic, bic, gmdl)
or on cross-validation. Estimates for the mean and covariance
of the PLS regression coefficients are available. They allow
the construction of approximate confidence intervals and the
application of test procedures (Kramer and Sugiyama
2012 <doi:10.1198/jasa.2011.tm10107>).
Further, cross-validation procedures for Ridge Regression and
Principal Components Regression are available.
Author: Nicole Kraemer [aut],
Mikio L. Braun [aut],
Frederic Bertrand [aut, cre]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between plsdof versions 0.4-0 dated 2025-09-13 and 0.5-0 dated 2026-03-24
DESCRIPTION | 12 - MD5 | 14 - NEWS.md | 5 R/pls.model.R | 10 README.md | 326 ++++++++++++----------------- build/partial.rdb |binary man/pls.model.Rd | 5 tests/testthat/test-kernel-and-edgecases.R | 13 + 8 files changed, 181 insertions(+), 204 deletions(-)
Title: RFSI & STRK Interpolation for Meteo and Environmental Variables
Description: Random Forest Spatial Interpolation (RFSI, Sekulić et al. (2020) <doi:10.3390/rs12101687>) and spatio-temporal geostatistical (spatio-temporal regression Kriging (STRK)) interpolation for meteorological (Kilibarda et al. (2014) <doi:10.1002/2013JD020803>, Sekulić et al. (2020) <doi:10.1007/s00704-019-03077-3>) and other environmental variables. Contains global spatio-temporal models calculated using publicly available data.
Author: Milan Kilibarda [aut] ,
Aleksandar Sekulic [aut, cre] ,
Tomislav Hengl [ctb],
Edzer Pebesma [ctb],
Benedikt Graeler [ctb]
Maintainer: Aleksandar Sekulic <asekulic@grf.bg.ac.rs>
Diff between meteo versions 2.0-3 dated 2024-04-18 and 2.0-4 dated 2026-03-24
DESCRIPTION | 14 +++-- MD5 | 10 +-- R/get_coordinates.R | 14 +++-- R/get_meteo.R | 136 ++++++++++++++++------------------------------------ data/NLpol.rda |binary man/get_meteo.Rd | 12 ++-- 6 files changed, 72 insertions(+), 114 deletions(-)
Title: Download Map Data from 'geoBoundaries'
Description: Tools to download data from 'geoBoundaries'
<https://www.geoboundaries.org/>. Several administration levels
available. See Runfola, D. et al. (2020) geoBoundaries: A global
database of political administrative boundaries. PLOS ONE 15(4): 1-9.
<doi:10.1371/journal.pone.0231866>.
Author: Diego Hernangomez [aut, cre, cph] ,
William and Mary geoLab [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between geobounds versions 0.1.0 dated 2026-02-11 and 0.1.1 dated 2026-03-24
geobounds-0.1.0/geobounds/inst/doc/geobounds.Rmd |only geobounds-0.1.0/geobounds/vignettes/geobounds.Rmd |only geobounds-0.1.1/geobounds/DESCRIPTION | 20 geobounds-0.1.1/geobounds/MD5 | 50 geobounds-0.1.1/geobounds/NEWS.md | 55 geobounds-0.1.1/geobounds/R/gb-cache.R | 4 geobounds-0.1.1/geobounds/R/gb-get-metadata.R | 2 geobounds-0.1.1/geobounds/R/gb-get.R | 4 geobounds-0.1.1/geobounds/R/utils.R | 2 geobounds-0.1.1/geobounds/README.md | 60 - geobounds-0.1.1/geobounds/build/partial.rdb |binary geobounds-0.1.1/geobounds/build/vignette.rds |binary geobounds-0.1.1/geobounds/inst/CITATION | 114 +- geobounds-0.1.1/geobounds/inst/COPYRIGHTS | 4 geobounds-0.1.1/geobounds/inst/WORDLIST | 9 geobounds-0.1.1/geobounds/inst/doc/geobounds.html | 560 +++------- geobounds-0.1.1/geobounds/inst/doc/geobounds.qmd |only geobounds-0.1.1/geobounds/inst/schemaorg.json | 12 geobounds-0.1.1/geobounds/man/figures/README-map-coverage-1.png |binary geobounds-0.1.1/geobounds/man/figures/README-simple_plot-1.png |binary geobounds-0.1.1/geobounds/man/gb_get.Rd | 4 geobounds-0.1.1/geobounds/man/gb_get_adm.Rd | 4 geobounds-0.1.1/geobounds/man/gb_get_max_adm_lvl.Rd | 4 geobounds-0.1.1/geobounds/man/gb_get_metadata.Rd | 6 geobounds-0.1.1/geobounds/man/gb_get_world.Rd | 4 geobounds-0.1.1/geobounds/man/geobounds-package.Rd | 2 geobounds-0.1.1/geobounds/tests/testthat/test-gb-cache.R | 2 geobounds-0.1.1/geobounds/vignettes/geobounds.qmd |only 28 files changed, 365 insertions(+), 557 deletions(-)
Title: Modified Iterative Cumulative Sum of Squares Algorithm
Description: Companion package of Carrion-i-Silvestre & Sansó (2026):
"Testing for Constant Unconditional Variance in Heavy-Tailed Time Series". It implements the Modified
Iterative Cumulative Sum of Squares Algorithm, which is an extension of
the Iterative Cumulative Sum of Squares (ICSS) Algorithm of Inclan and Tiao (1994), and it checks for changes in the
unconditional variance of a time series controlling for the tail index of
the underlying distribution. The fourth order moment is estimated non-parametrically
to avoid the size problems when the innovations are non-Gaussian (see, Sansó et al., 2004).
Critical values and p-values are generated using a Generalized Extreme Value distribution approach.
References
Carrion-i-Silvestre J.J & Sansó A (2026) <doi:10.1080/03610918.2026.2615207>.
Inclan C & Tiao G.C (1994) <doi:10.1080/01621459.1994.10476824>,
Sansó A & Aragó V & Carrion-i-Silvestre J.L (2004) <https://dspace.uib.es/xmlui/bitstream/handle/11201/152078/52 [...truncated...]
Author: Josep Lluis Carrion-i-Silvestre [aut],
Andreu Sanso [aut, cre]
Maintainer: Andreu Sanso <andreu.sanso@uib.eu>
Diff between micss versions 0.3.0 dated 2026-03-17 and 0.3.1 dated 2026-03-24
DESCRIPTION | 9 ++++----- MD5 | 4 ++-- NEWS.md | 11 +++++++++++ 3 files changed, 17 insertions(+), 7 deletions(-)
Title: Generating Cluster Masks for Single-Cell Dimensional Reduction
Plots
Description: Implements a procedure to automatically generate 2D masks
for clusters on dimensional reduction plots from methods like
t-SNE (t-distributed stochastic neighbor embedding) or
UMAP (uniform manifold approximation and projection),
with a focus on single-cell RNA-sequencing data.
Author: Alexey Sergushichev [aut, cre]
Maintainer: Alexey Sergushichev <alsergbox@gmail.com>
Diff between mascarade versions 0.3.2 dated 2026-03-06 and 0.3.3 dated 2026-03-24
DESCRIPTION | 6 +- MD5 | 37 ++++++++-------- NEWS.md | 4 + R/fancyMask.R | 50 ++++++++++++++++++---- R/generateMask.R | 44 ++++++++++++++++++- R/ggforce_mark_label.R | 7 ++- R/mark_label.R | 69 +++++++++++++++++++++++++++++- R/mark_shape.R | 22 +++++++-- R/zzz.R | 2 build/vignette.rds |binary inst/doc/mascarade-gallery.html | 32 +++++++------- inst/doc/mascarade-tutorial.html | 76 +++++++++++++++++----------------- man/fancyMask.Rd | 18 +++++++- man/generateMask.Rd | 2 man/geom_mark_shape.Rd | 8 +++ tests/testthat/test-emptyMask.R | 8 +++ tests/testthat/test-fancyMask.R | 43 +++++++++++++++++-- tests/testthat/test-generateMask.R | 60 ++++++++++++++++++++++++++ tests/testthat/test-geom_mark_shape.R | 27 ++++++++++++ tests/testthat/test-simplify_outer.R |only 20 files changed, 412 insertions(+), 103 deletions(-)
Title: Boosting Functional Regression Models
Description: Regression models for functional data, i.e.,
scalar-on-function, function-on-scalar and function-on-function
regression models, are fitted by a component-wise gradient boosting
algorithm. For a manual on how to use 'FDboost', see Brockhaus,
Ruegamer, Greven (2017) <doi:10.18637/jss.v094.i10>.
Author: Sarah Brockhaus [aut] ,
David Ruegamer [aut, cre] ,
Almond Stoecker [aut] ,
Torsten Hothorn [ctb] ,
with contributions by many others [ctb]
Maintainer: David Ruegamer <david.ruegamer@gmail.com>
Diff between FDboost versions 1.1-3 dated 2025-08-23 and 1.1-4 dated 2026-03-24
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS.md | 7 +++++++ R/baselearners.R | 5 ++--- R/baselearnersX.R | 4 ++-- R/bootstrapCIs.R | 2 +- build/vignette.rds |binary inst/doc/FLAM_canada.pdf |binary inst/doc/FLAM_fuel.pdf |binary inst/doc/FLAM_viscosity.pdf |binary inst/doc/density-on-scalar_birth.pdf |binary man/bhistx.Rd | 4 ++-- man/bootstrapCI.Rd | 2 +- man/bsignal.Rd | 4 ++-- tests/general_tests.R | 7 +++++-- 15 files changed, 40 insertions(+), 31 deletions(-)
Title: Threshold Selection and Uncertainty for Extreme Value Analysis
Description: Provides functions for the selection of thresholds for use in
extreme value models, based mainly on the methodology in
Northrop, Attalides and Jonathan (2017) <doi:10.1111/rssc.12159>.
It also performs predictive inferences about future extreme values,
based either on a single threshold or on a weighted average of inferences
from multiple thresholds, using the 'revdbayes' package
<https://cran.r-project.org/package=revdbayes>.
At the moment only the case where the data can be treated as
independent identically distributed observations is considered.
Author: Paul J. Northrop [aut, cre, cph],
Nicolas Attalides [aut]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between threshr versions 1.0.7 dated 2025-10-08 and 1.0.8 dated 2026-03-24
threshr-1.0.7/threshr/R/gp_mle.R |only threshr-1.0.8/threshr/DESCRIPTION | 8 - threshr-1.0.8/threshr/MD5 | 28 ++-- threshr-1.0.8/threshr/NEWS.md | 6 + threshr-1.0.8/threshr/R/parameter_stability.R | 9 + threshr-1.0.8/threshr/R/threshr-internal.R | 110 +++++++++++++++++++ threshr-1.0.8/threshr/README.md | 4 threshr-1.0.8/threshr/build/partial.rdb |binary threshr-1.0.8/threshr/build/vignette.rds |binary threshr-1.0.8/threshr/inst/doc/threshr-vignette.R | 8 - threshr-1.0.8/threshr/inst/doc/threshr-vignette.Rmd | 8 - threshr-1.0.8/threshr/inst/doc/threshr-vignette.html | 12 +- threshr-1.0.8/threshr/man/figures |only threshr-1.0.8/threshr/man/stability.Rd | 7 - threshr-1.0.8/threshr/man/threshr-internal.Rd | 3 threshr-1.0.8/threshr/vignettes/threshr-vignette.Rmd | 8 - 16 files changed, 166 insertions(+), 45 deletions(-)
Title: Simplicially Constrained Regression Models for Proportions
Description: Simplicially constrained regression models for proportions in both sides. The constraint is always that the betas are non-negative and sum to 1. References: Iverson S.J.., Field C., Bowen W.D. and Blanchard W. (2004) "Quantitative Fatty Acid Signature Analysis: A New Method of Estimating Predator Diets". Ecological Monographs, 74(2): 211-235. <doi:10.1890/02-4105>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between scpropreg versions 1.0 dated 2025-11-20 and 1.1 dated 2026-03-24
DESCRIPTION | 10 ++-- MD5 | 16 +++---- NAMESPACE | 2 R/kld.R | 107 ++++++++++++++++++++++++++++++++++++++++++----- R/lr.R | 48 +++++++++++++++++++-- R/mlr.R | 49 ++++++++++++++++++++- R/mpcls.R | 43 +++++++++++++----- R/pcls.R | 36 ++++++++++----- man/scpropreg-package.Rd | 8 +-- 9 files changed, 261 insertions(+), 58 deletions(-)
Title: Robust Matrix-Variate Parameter Estimation
Description: Robust covariance estimation for matrix-valued data and data with Kronecker-covariance structure using the Matrix Minimum Covariance Determinant (MMCD) estimators and outlier explanation using and Shapley values.
Author: Marcus Mayrhofer [aut, cre],
Una Radojicic [aut],
Peter Filzmoser [aut]
Maintainer: Marcus Mayrhofer <marcus.mayrhofer@tuwien.ac.at>
Diff between robustmatrix versions 0.1.4 dated 2025-05-14 and 0.1.5 dated 2026-03-24
DESCRIPTION | 10 - MD5 | 24 ++-- R/RcppExports.R | 27 ++--- R/rmatnorm.R | 17 ++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/MMCD_examples.html | 21 +--- man/cstep.Rd | 10 + man/mmcd.Rd | 15 ++ man/mmle.Rd | 10 + man/rmatnorm.Rd | 5 src/RcppExports.cpp | 49 +++++---- src/functions.cpp | 226 ++++++++++++++++++++++++++++++++++---------- 13 files changed, 292 insertions(+), 122 deletions(-)
Title: Multivariate Birth-Death Processes
Description: Computationally efficient functions to provide direct likelihood-based
inference for partially-observed multivariate birth-death processes. Such processes
range from a simple Yule model to the complex susceptible-infectious-removed model
in disease dynamics. Efficient likelihood evaluation facilitates maximum likelihood
estimation and Bayesian inference.
Author: Lam S.T. Ho [aut],
Marc A. Suchard [aut, cre],
Forrest W. Crawford [aut],
Jason Xu [ctb],
Vladimir N. Minin [ctb]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between MultiBD versions 1.0.1 dated 2026-02-12 and 1.0.2 dated 2026-03-24
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 5 +++++ inst/doc/SIR-MCMC.pdf |binary inst/doc/SIRtrans.pdf |binary src/Makevars | 3 +-- src/Makevars.win | 4 +--- src/bbd.h | 2 +- 8 files changed, 19 insertions(+), 17 deletions(-)
Title: 'Open Scoring' API Client
Description: Creativity research involves the need to score open-ended problems.
Usually done by humans, automatic scoring using AI becomes more
and more accurate. This package provides a simple interface to
the 'Open Scoring' API <https://openscoring.du.edu/docs>, leading creativity scoring technology by
Organiscak et al. (2023) <doi:10.1016/j.tsc.2023.101356>. With it,
you can score your own data directly from an R script.
Author: Jakub Jedrusiak [aut, cre, cph] ,
Peter Organisciak [ctb] ,
Selcuk Acar [ctb] ,
Denis Dumas [ctb] ,
Pier-Luc de Chantal [ctb] ,
Kelly Berthiaume [ctb]
Maintainer: Jakub Jedrusiak <jakub.jedrusiak2@uwr.edu.pl>
Diff between openscoring versions 1.0.6 dated 2026-02-11 and 1.1.0 dated 2026-03-24
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/ocsai.R | 18 ++++++++++++------ README.md | 28 ++++++++++++++++++---------- man/ocsai.Rd | 14 ++++++++------ 6 files changed, 52 insertions(+), 31 deletions(-)
Title: Thresholded Ordered Sparse CCA
Description: Performs Thresholded Ordered Sparse Canonical Correlation Analysis (CCA). For more details see Senar, N. (2024) <doi:10.1093/bioadv/vbae021> and Senar, N. et al. (2025) <doi:10.48550/arXiv.2503.15140>.
Author: Nuria Senar [aut, cre]
Maintainer: Nuria Senar <n.senarvilladeamigo@amsterdamumc.nl>
Diff between toscca versions 0.1.0 dated 2025-11-07 and 0.1.1 dated 2026-03-24
DESCRIPTION | 8 MD5 | 27 +- NAMESPACE | 5 R/basic.R | 168 +++++++++++++---- R/main.R | 414 +++++++++++++++++++++++++++--------------- inst/doc/toscca-vignette.R | 17 - inst/doc/toscca-vignette.Rmd | 17 - inst/doc/toscca-vignette.html | 26 -- man/plt.selstab.Rd | 7 man/summary.toscca_object.Rd |only man/toscamm.perm.Rd | 2 man/toscca.Rd | 20 +- man/toscca.perm.Rd | 6 man/tosccamm.Rd | 69 ------- vignettes/toscca-vignette.Rmd | 17 - 15 files changed, 477 insertions(+), 326 deletions(-)
Title: Quantile G-Computation
Description: G-computation for a set of time-fixed exposures with
quantile-based basis functions, possibly under linearity and
homogeneity assumptions. This approach estimates a regression line
corresponding to the expected change in the outcome (on the link
basis) given a simultaneous increase in the quantile-based category
for all exposures. Works with continuous, binary, and right-censored
time-to-event outcomes. Reference: Alexander P. Keil, Jessie P.
Buckley, Katie M. OBrien, Kelly K. Ferguson, Shanshan Zhao, and
Alexandra J. White (2019) A quantile-based g-computation approach to
addressing the effects of exposure mixtures; <doi:10.1289/EHP5838>.
Author: Alexander Keil [aut, cre]
Maintainer: Alexander Keil <alex.keil@nih.gov>
Diff between qgcomp versions 2.18.7 dated 2025-08-20 and 2.18.10 dated 2026-03-24
DESCRIPTION | 10 - MD5 | 26 +-- NAMESPACE | 1 NEWS.md | 12 + R/base_extensions.R | 12 - R/base_generics.R | 9 + R/base_surv.R | 16 + README.md | 2 build/vignette.rds |binary inst/doc/qgcomp-advanced-vignette.html | 245 +++++++++++++----------------- inst/doc/qgcomp-basic-vignette.html | 266 ++++++++++++++------------------- inst/doc/qgcomp-vignette.html | 187 +++++++++-------------- man/mice.impute.leftcenslognorm.Rd | 12 - man/qgcomp.cox.noboot.Rd | 10 + 14 files changed, 385 insertions(+), 423 deletions(-)
Title: Multi-Omic Differentially Expressed Gene-Gene Pairs
Description: Performs multi-omic differential network
analysis by revealing differential interactions between molecular entities
(genes, proteins, transcription factors, or other biomolecules) across the
omic datasets provided.
For each omic dataset, a differential network is constructed where
links represent statistically significant differential interactions between
entities. These networks are then integrated into a comprehensive visualization
using distinct colors to distinguish interactions from different omic layers.
This unified display allows interactive exploration of cross-omic
patterns, such as differential interactions present at both transcript and
protein levels. For each link, users can access differential statistical
significance metrics (p values or adjusted p values, calculated via robust or
traditional linear regression with interaction term) and differential regression
plots.
The methods implemented in this package are described in Sciacca et al. (2023)
<doi:10.1093/bioinform [...truncated...]
Author: Elisabetta Sciacca [aut, cre, cph] ,
Myles Lewis [ctb]
Maintainer: Elisabetta Sciacca <e.sciacca@qmul.ac.uk>
Diff between multiDEGGs versions 1.1.3 dated 2026-02-02 and 1.2.0 dated 2026-03-24
multiDEGGs-1.1.3/multiDEGGs/inst/doc/Differential_Network_Analisis.R |only multiDEGGs-1.1.3/multiDEGGs/inst/doc/Differential_Network_Analisis.Rmd |only multiDEGGs-1.1.3/multiDEGGs/inst/doc/Differential_Network_Analisis.html |only multiDEGGs-1.1.3/multiDEGGs/vignettes/1_Differential_Network_Analisis.html |only multiDEGGs-1.1.3/multiDEGGs/vignettes/2_Feature_Selection.html |only multiDEGGs-1.1.3/multiDEGGs/vignettes/Differential_Network_Analisis.Rmd |only multiDEGGs-1.1.3/multiDEGGs/vignettes/multiDEGGs_vignette.html |only multiDEGGs-1.2.0/multiDEGGs/DESCRIPTION | 6 - multiDEGGs-1.2.0/multiDEGGs/MD5 | 25 ++-- multiDEGGs-1.2.0/multiDEGGs/NEWS.md | 9 + multiDEGGs-1.2.0/multiDEGGs/R/core_functions.R | 2 multiDEGGs-1.2.0/multiDEGGs/R/sysdata.rda |binary multiDEGGs-1.2.0/multiDEGGs/build/vignette.rds |binary multiDEGGs-1.2.0/multiDEGGs/inst/CITATION | 17 +-- multiDEGGs-1.2.0/multiDEGGs/inst/doc/Differential_Network_Analysis.R |only multiDEGGs-1.2.0/multiDEGGs/inst/doc/Differential_Network_Analysis.Rmd |only multiDEGGs-1.2.0/multiDEGGs/inst/doc/Differential_Network_Analysis.html |only multiDEGGs-1.2.0/multiDEGGs/inst/doc/Feature_Selection.html | 51 +++++----- multiDEGGs-1.2.0/multiDEGGs/vignettes/Differential_Network_Analysis.Rmd |only 19 files changed, 60 insertions(+), 50 deletions(-)
Title: Constrained Ordinary Least Squares
Description: Constrained ordinary least squares is performed. One constraint is that all beta coefficients (including the constant) cannot be negative. They can be either 0 or strictly positive. Another constraint is that the sum of the beta coefficients equals a constant. References: Hansen, B. E. (2022). Econometrics, Princeton University Press. <ISBN:9780691235899>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between cols versions 1.5 dated 2024-12-20 and 1.6 dated 2026-03-24
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 1 + R/mpcls.R | 41 +++++++++++++++++++++++++++++------------ R/mpls.R | 42 ++++++++++++++++++++++++++++++------------ R/pcls.R | 35 +++++++++++++++++++++++------------ R/pls.R | 36 ++++++++++++++++++++++++------------ man/cols-package.Rd | 4 ++-- man/pcls.Rd | 2 +- man/pls.Rd | 2 +- 10 files changed, 125 insertions(+), 66 deletions(-)
Title: Pipeline Audit Trails and Data Diagnostics for 'tidyverse'
Workflows
Description: Provides pipeline audit trails and data diagnostics for
'tidyverse' workflows. The audit trail system captures lightweight
metadata snapshots at each step of a pipeline, building a structured
record without storing the data itself. Operation-aware taps enrich
snapshots with join match rates and filter drop statistics.
Trails can be serialized to 'JSON' or 'RDS' and exported as
self-contained 'HTML' visualizations. Also includes diagnostic
functions for interactive data analysis including frequency tables,
string quality auditing, and data comparison.
Author: Fernando Cordeiro [aut, cre, cph]
Maintainer: Fernando Cordeiro <fernandolpcordeiro@gmail.com>
Diff between tidyaudit versions 0.1.0 dated 2026-02-27 and 0.2.0 dated 2026-03-24
DESCRIPTION | 25 - MD5 | 108 ++-- NAMESPACE | 11 NEWS.md | 36 + R/audit-diff.R | 32 - R/audit-export.R |only R/audit-report.R | 38 + R/audit-snap.R | 145 ++++-- R/audit-tap.R | 54 +- R/audit-trail.R | 138 +++++- R/audit-transform.R |only R/compare-tables.R | 740 +++++++++++++++++++++++++++++---- R/data-summary.R | 13 R/filter-tap.R | 35 + R/join-tap.R | 135 ++++-- R/string-cleaning.R | 125 ----- R/tab-tap.R |only R/tabulation.R |only R/tidyaudit-package.R | 1 README.md | 160 ++++--- inst/WORDLIST |only inst/doc/diagnostics.R | 44 + inst/doc/diagnostics.Rmd | 168 ++++++- inst/doc/diagnostics.html | 606 ++++++++++++++++++++------- inst/doc/tidyaudit.R | 72 +++ inst/doc/tidyaudit.Rmd | 244 ++++++++--- inst/doc/tidyaudit.html | 518 ++++++++++++++++------- inst/templates |only man/audit_diff.Rd | 3 man/audit_export.Rd |only man/audit_report.Rd | 10 man/audit_tap.Rd | 26 + man/audit_trail.Rd | 10 man/audit_transform.Rd | 58 +- man/compare_tables.Rd | 84 +++ man/diagnose_nas.Rd | 3 man/diagnose_strings.Rd | 3 man/figures |only man/filter_tap.Rd | 21 man/get_summary_table.Rd | 3 man/join_tap.Rd | 97 +++- man/read_trail.Rd |only man/summarize_column.Rd | 8 man/tab.Rd |only man/tab_tap.Rd |only man/tidyaudit-package.Rd | 3 man/trail_to_df.Rd |only man/trail_to_list.Rd |only man/write_trail.Rd |only tests/testthat/test-audit-export.R |only tests/testthat/test-audit-report.R | 21 tests/testthat/test-audit-snap.R | 137 ++++++ tests/testthat/test-audit-tap.R | 72 +++ tests/testthat/test-audit-trail.R | 105 ++++ tests/testthat/test-audit-transform.R |only tests/testthat/test-compare-tables.R | 749 +++++++++++++++++++++++++++++++++- tests/testthat/test-data-summary.R | 2 tests/testthat/test-filter-tap.R | 19 tests/testthat/test-join-tap.R | 35 + tests/testthat/test-string-cleaning.R | 96 ---- tests/testthat/test-tab-tap.R |only tests/testthat/test-tabulation.R |only vignettes/diagnostics.Rmd | 168 ++++++- vignettes/tidyaudit.Rmd | 244 ++++++++--- 64 files changed, 4289 insertions(+), 1136 deletions(-)
Title: Partial Least Squares Regression for Cox Models and Related
Techniques
Description: Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings <doi:10.1093/bioinformatics/btu660>, Bastien, P., Bertrand, F., Meyer N., Maumy-Bertrand, M. (2015), Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data, Bioinformatics, 31(3):397-404. Cross validation criteria were studied in <doi:10.48550/arXiv.1810.02962>, Bertrand, F., Bastien, Ph. and Maumy-Bertrand, M. (2018), Cross validating extensions of kernel, sparse or regular partial least squares regression models to censored data.
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between plsRcox versions 1.8.1 dated 2026-02-28 and 1.8.2 dated 2026-03-24
DESCRIPTION | 8 - MD5 | 28 ++-- NAMESPACE | 3 R/coxDKsplsDR.default.R | 9 + R/coxDKsplsDR.formula.R | 1 R/coxplsDR.default.R | 7 + R/coxplsDR.formula.R | 1 R/coxsplsDR.default.R | 9 + R/coxsplsDR.formula.R | 1 R/plsRcoxmodel.default.R | 3 R/predict.coxDRmodels.R |only R/predict.plsRcoxmodel.R | 172 +++++++++++++++++++++++------ README.md | 1 man/predict.coxDRmodel.Rd |only man/predict.plsRcoxmodel.Rd | 28 +++- tests/testthat/test-predict-coxdrmodels.R |only tests/testthat/test-predict-plsRcoxmodel.R |only 17 files changed, 210 insertions(+), 61 deletions(-)
Title: Handling and Analysing EQ-5d Data
Description: The EQ-5D is a widely-used standarized instrument for measuring Health Related Quality Of Life (HRQOL),
developed by the EuroQol group <https://euroqol.org/>. It assesses five dimensions; mobility, self-care,
usual activities, pain/discomfort, and anxiety/depression, using either a three-level (EQ-5D-3L) or five-level (EQ-5D-5L) scale.
Scores from these dimensions are commonly converted into a single utility index using country-specific value sets,
which are critical in clinical and economic evaluations of healthcare and in population health surveys.
The eq5dsuite package enables users to calculate utility index values for the EQ-5D instruments,
including crosswalk utilities using the original crosswalk developed by van Hout et al. (2012) <doi:10.1016/j.jval.2012.02.008>
(mapping EQ-5D-5L responses to EQ-5D-3L index values), or the recently developed reverse crosswalk
by van Hout et al. (2021) <doi:10.1016/j.jval.2021.03.009> (mapping EQ-5D-3L responses
to EQ-5D-5L in [...truncated...]
Author: Kim Rand [aut, cre] ,
Oliver Rivero-Arias [aut] ,
Iryna Schlackow [aut] ,
Anabel Estevez-Carrillo [aut]
Maintainer: Kim Rand <krand@mathsinhealth.com>
Diff between eq5dsuite versions 1.0.1 dated 2025-06-24 and 1.0.2 dated 2026-03-24
DESCRIPTION | 18 MD5 | 51 + NAMESPACE | 7 NEWS.md | 6 R/EQ_functions.R | 312 +++++++-- R/dependencies.R | 6 R/eq5d_aux.R | 718 ++++++++++++---------- R/eq5d_devlin.R | 1621 ++++++++++++++++++++++++-------------------------- R/eqxw.R | 2 R/run_app.R |only R/shiny_helpers.R |only R/sysdata.rda |binary data/example_data.rda |binary inst |only man/dot-freqtab.Rd | 5 man/dot-pchctab.Rd | 8 man/eq5d3l.Rd | 47 + man/eq5d5l.Rd | 50 + man/eq5dy3l.Rd | 51 + man/figure_1_2_3.Rd | 5 man/run_app.Rd |only man/toEQ5Dindex.Rd | 41 - 22 files changed, 1645 insertions(+), 1303 deletions(-)
Title: 'BLAS' and 'LAPACK' Routines for Native R Matrices and
'big.matrix' Objects
Description: Provides arithmetic functions for R matrix and 'big.matrix' objects as well as functions for QR factorization, Cholesky factorization, General eigenvalue, and Singular value decomposition (SVD). A method matrix multiplication and an arithmetic method -for matrix addition, matrix difference- allows for mixed type operation -a matrix class object and a big.matrix class object- and pure type operation for two big.matrix class objects.
Author: Frederic Bertrand [cre, aut] ,
Michael J. Kane [aut],
Bryan Lewis [aut],
John W. Emerson [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between bigalgebra versions 3.0.0 dated 2025-10-05 and 3.1.0 dated 2026-03-24
DESCRIPTION | 12 +-- MD5 | 22 ++--- NEWS.md | 4 + README.md | 10 +- build/vignette.rds |binary inst/CITATION | 3 inst/doc/big-matrix-workflows.html | 39 +++++----- inst/doc/level-1-blas-style-helpers.html | 9 +- inst/doc/matrix-wrapper-helpers.html | 13 +-- inst/doc/z_lapack-decompositions.html | 22 ++--- src/bigalgebra.cpp | 119 ++++++++++++++++--------------- tests/testthat/test-wrappers.R | 25 ++++++ 12 files changed, 158 insertions(+), 120 deletions(-)
Title: Estimates and Plots Single-Level and Multilevel Latent Class
Models
Description: Efficiently estimates single- and multilevel latent class models with covariates, allowing for output visualization in all specifications. For more technical details, see Lyrvall et al. (2025) <doi:10.1080/00273171.2025.2473935>.
Author: Roberto Di Mari [aut, cre],
Johan Lyrvall [aut],
Zsuzsa Bakk [ctb],
Jennifer Oser [ctb],
Jouni Kuha [ctb]
Maintainer: Roberto Di Mari <roberto.dimari@unict.it>
Diff between multilevLCA versions 2.1.2 dated 2025-11-06 and 2.1.4 dated 2026-03-24
DESCRIPTION | 8 - MD5 | 18 +-- R/MLCAfunctions.R | 38 ++++--- build/partial.rdb |binary data/dataIEA.rda |binary data/dataTOY.rda |binary src/LCAfit.cpp | 48 +++++---- src/SafeFunctions.cpp | 79 ++++++++++------ src/SafeFunctions.h | 1 src/multilevLC_EM.cpp | 242 +++++++++++++++++++++++++++++++++++++++----------- 10 files changed, 308 insertions(+), 126 deletions(-)
Title: Residual Prediction Tests for Well-Specification of Instrumental
Variable Models
Description: Two tests for the well-specification of the linear instrumental
variable model. The first test is based on trying to predict the residuals of a
two-stage least-squares regression using a random forest. The second test is robust
to weak-identification and based on trying to predict the residuals for a particular
candidate parameter and can also be used to construct confidence sets with an
Anderson-Rubin-type inversion. Details can be found in Scheidegger, Londschien
and Bühlmann (2025) "Machine-learning-powered specification testing in linear
instrumental variable models" <doi:10.48550/arXiv.2506.12771>.
Author: Cyrill Scheidegger [aut, cre, cph]
Maintainer: Cyrill Scheidegger <cyrill.scheidegger@stat.math.ethz.ch>
Diff between RPIV versions 1.0.0 dated 2025-10-19 and 1.1.0 dated 2026-03-24
DESCRIPTION | 22 +- MD5 | 19 +- NAMESPACE | 1 NEWS.md | 5 R/RPIV_test.R | 380 ++++++++++++++++++++++++++++++++-------- R/utils.R |only README.md | 247 ++++++++++++++++++++------ man/RPIV_test.Rd | 2 man/figures |only man/weak_RPIV_test.Rd |only tests/testthat/test-RPIV_test.R | 224 +++++++++++++++++++++++ 11 files changed, 762 insertions(+), 138 deletions(-)
Title: Resource Resolver
Description: A resource represents some data or a computation unit. It is
described by a URL and credentials. This package proposes a Resource model
with "resolver" and "client" classes to facilitate the access and the usage of the
resources.
Author: Yannick Marcon [aut, cre] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between resourcer versions 1.5.0 dated 2026-02-06 and 1.5.1 dated 2026-03-24
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ build/vignette.rds |binary tests/testthat/test-RDSFileResource.R | 6 ++++++ tests/testthat/test-ShellResource.R | 5 +++++ tests/testthat/test-SshResource.R | 3 +++ tests/testthat/test-TidyFileResource.R | 7 +++++++ 7 files changed, 30 insertions(+), 9 deletions(-)
Title: An Alternative 'Rcpp' Wrapper of 'MeCab'
Description: A plain 'Rcpp' wrapper for 'MeCab' that can segment Chinese,
Japanese, and Korean text into tokens. The main goal of this package
is to provide an alternative to 'tidytext' using morphological
analysis.
Author: Akiru Kato [aut, cre],
Shogo Ichinose [aut],
Taku Kudo [aut],
Jorge Nocedal [ctb],
Nippon Telegraph and Telephone Corporation [cph]
Maintainer: Akiru Kato <paithiov909@gmail.com>
Diff between gibasa versions 1.1.2 dated 2025-02-16 and 1.1.3 dated 2026-03-24
DESCRIPTION | 14 +++---- LICENSE.note | 37 +++++++++++++++++++ MD5 | 42 +++++++++++----------- NAMESPACE | 1 NEWS.md | 4 ++ R/bind_lr.R | 18 ++++----- R/bind_tf_idf2.R | 2 - R/build_dict.R | 16 ++------ R/collapse_tokens.R | 14 +++---- R/gibasa-package.R | 1 R/pack.R | 18 ++++----- R/prettify.R | 4 +- R/tokenize.R | 26 ++++++------- R/utils.R | 8 ++-- README.md | 93 +++++++++++++++++++++++++++----------------------- build/partial.rdb |binary man/build_sys_dic.Rd | 6 --- man/build_user_dic.Rd | 6 --- man/gibasa-package.Rd | 2 - src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 12 +++--- 22 files changed, 178 insertions(+), 148 deletions(-)
Title: Fit, Simulate, and Diagnose Hierarchical Exponential-Family
Models for Big Networks
Description: A toolbox for analyzing and simulating large networks based on hierarchical exponential-family random graph models (HERGMs).'bigergm' implements the estimation for large networks efficiently building on the 'lighthergm' and 'hergm' packages. Moreover, the package contains tools for simulating networks with local dependence to assess the goodness-of-fit.
Author: Cornelius Fritz [aut, cre],
Michael Schweinberger [aut],
Shota Komatsu [aut],
Juan Nelson Martinez Dahbura [aut],
Takanori Nishida [aut],
Angelo Mele [aut]
Maintainer: Cornelius Fritz <corneliusfritz2010@gmail.com>
Diff between bigergm versions 1.2.5 dated 2025-10-05 and 1.2.6 dated 2026-03-24
DESCRIPTION | 6 ++--- MD5 | 22 ++++++++++---------- NAMESPACE | 1 R/bigergm.R | 2 - R/est_between.R | 3 +- R/est_within.R | 7 ++++++ R/helper.R | 31 +++++++++++++++++++---------- R/preprocess.R | 6 ++--- R/simulate_bigergm.R | 40 ++++++++++++++++++++++++------------- build/vignette.rds |binary tests/testthat/test-cache.R | 1 vignettes/bigergm.html | 47 +++++++++++++++++++++----------------------- 12 files changed, 99 insertions(+), 67 deletions(-)
Title: Custom Legends with Statistical Comparison Brackets
Description: Add publication-quality custom legends with vertical brackets. Designed for displaying statistical comparisons between groups,
commonly used in scientific publications for showing significance levels.
Features include adaptive positioning, automatic bracket spacing for overlapping
comparisons, font family inheritance, and support for asterisks, p-values,
or custom labels. Compatible with 'ggplot2' graphics.
Author: Yoshiaki Sato [aut, cre]
Maintainer: Yoshiaki Sato <h20gg702@outlook.jp>
Diff between vbracket versions 1.3.0 dated 2026-03-16 and 1.3.2 dated 2026-03-24
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/annotation_grob.R | 37 ++++++++++++++++++++----------------- 3 files changed, 27 insertions(+), 24 deletions(-)
Title: Testlet Item Response Theory
Description: Implementation of Testlet and Item Response Theory.
A light-version yet comprehensive and streamlined framework for psychometric analysis using
unidimensional and multidimensional Item Response Theory
(IRT; Baker & Kim (2004) <doi:10.1201/9781482276725>) and Testlet Response Theory
(TRT; Wainer et al., (2007) <doi:10.1017/CBO9780511618765>).
Designed for researchers, this package supports the estimation of item and person
parameters for a wide variety of models, including binary (i.e., Rasch, 2-Parameter Logistic, 3-Parameter Logistic)
and polytomous (Partial Credit Model, Generalized Partial Credit Model, Graded Response Model) formats. It also supports the estimation of Testlet models (Rasch Testlet, 2-Parameter Logistic Testlet, 3-Parameter Logistic Testlet, Bifactor, Partial Credit Model Testlet, Graded Response), allowing users to account for local item dependence in bundled items. A key feature is the specialized support for combination use and joint estimation of [...truncated...]
Author: Jiawei Xiong [aut, cre],
Cheng Tang [ctb],
Qidi Liu [ctb]
Maintainer: Jiawei Xiong <jiawei.xiong@uga.edu>
Diff between tirt versions 0.3.0 dated 2026-03-18 and 0.3.1 dated 2026-03-24
DESCRIPTION | 12 ++-- MD5 | 6 +- R/mbinary.R | 155 +++++++++++++++++++++++++++++------------------------ man/mirt_binary.Rd | 6 +- 4 files changed, 99 insertions(+), 80 deletions(-)
Title: Runs Monte Carlo Markov Chain - With Either 'JAGS', 'nimble' or
'greta' - While Adjusting Burn-in and Thinning Parameters
Description: The function runMCMC_btadjust() returns a mcmc.list object which is the output of a
Markov Chain Monte Carlo obtained - from either 'JAGS', 'nimble' or 'greta' -
after adjusting burn-in and thinning parameters to meet pre-specified criteria
in terms of convergence & effective sample size. Used with 'nimble', runMCMC_btadjust()
allows extra calculations (e.g. information criteria for model comparison and goodness-of-fit
p-values for model diagnosis).
Author: Frederic Gosselin [cre, aut] ,
Institut national de recherche pour l'agriculture, l'alimentation et
l'environnement [cph]
Maintainer: Frederic Gosselin <frederic.gosselin@inrae.fr>
This is a re-admission after prior archival of version 1.1.2 dated 2024-08-28
Diff between runMCMCbtadjust versions 1.1.2 dated 2024-08-28 and 1.1.3 dated 2026-03-24
runMCMCbtadjust-1.1.2/runMCMCbtadjust/inst/doc/runMCMCbtadjust_Pres.Rmd |only runMCMCbtadjust-1.1.2/runMCMCbtadjust/inst/doc/runMCMCbtadjust_Pres.html |only runMCMCbtadjust-1.1.2/runMCMCbtadjust/vignettes/runMCMCbtadjust_Pres.Rmd |only runMCMCbtadjust-1.1.2/runMCMCbtadjust/vignettes/runMCMCbtadjust_Pres.Rmd.orig |only runMCMCbtadjust-1.1.3/runMCMCbtadjust/DESCRIPTION | 15 runMCMCbtadjust-1.1.3/runMCMCbtadjust/MD5 | 62 runMCMCbtadjust-1.1.3/runMCMCbtadjust/NAMESPACE | 27 runMCMCbtadjust-1.1.3/runMCMCbtadjust/NEWS.md | 24 runMCMCbtadjust-1.1.3/runMCMCbtadjust/R/findMCMC_strong_corrs.R | 4 runMCMCbtadjust-1.1.3/runMCMCbtadjust/R/runMCMC_btadjust.r | 98 runMCMCbtadjust-1.1.3/runMCMCbtadjust/build/vignette.rds |binary runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/ecology.csl |only runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/references.bib |only runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/runMCMCbtadjust_Nimble_variations.Rmd | 356 + runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/runMCMCbtadjust_Nimble_variations.Rmd.orig |only runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/runMCMCbtadjust_Nimble_variations.html | 1934 +++++--- runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/runMCMCbtadjust_Presentation.Rmd |only runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/runMCMCbtadjust_Presentation.Rmd.orig |only runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/runMCMCbtadjust_Presentation.html |only runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/runMCMCbtadjust_extraCalculations.Rmd | 53 runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/runMCMCbtadjust_extraCalculations.Rmd.orig |only runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/runMCMCbtadjust_extraCalculations.html | 2395 ++++++---- runMCMCbtadjust-1.1.3/runMCMCbtadjust/inst/doc/vignette.rds |only runMCMCbtadjust-1.1.3/runMCMCbtadjust/man/findMCMC_strong_corrs.Rd | 5 runMCMCbtadjust-1.1.3/runMCMCbtadjust/man/fragments/Nimble1_alone_fragment.Rmd | 4 runMCMCbtadjust-1.1.3/runMCMCbtadjust/man/fragments/Nimble_and_Jags2_fragment.rmd | 5 runMCMCbtadjust-1.1.3/runMCMCbtadjust/man/fragments/Nimble_extraCalculations_DIC_parallel_fragment.Rmd | 4 runMCMCbtadjust-1.1.3/runMCMCbtadjust/man/fragments/Nimble_extraCalculations_GOF_parallel_fragment.Rmd | 4 runMCMCbtadjust-1.1.3/runMCMCbtadjust/man/fragments/Nimble_samplers1_fragment.Rmd | 8 runMCMCbtadjust-1.1.3/runMCMCbtadjust/man/fragments/Nimble_samplers_APT_fragment.Rmd | 4 runMCMCbtadjust-1.1.3/runMCMCbtadjust/man/fragments/Nimble_samplers_HMC_fragment.Rmd | 2 runMCMCbtadjust-1.1.3/runMCMCbtadjust/man/runMCMC_btadjust.Rd | 30 runMCMCbtadjust-1.1.3/runMCMCbtadjust/tests/testthat/test-runMCMC_btadjust.R | 2 runMCMCbtadjust-1.1.3/runMCMCbtadjust/vignettes/runMCMCbtadjust_Nimble_variations.Rmd | 356 + runMCMCbtadjust-1.1.3/runMCMCbtadjust/vignettes/runMCMCbtadjust_Nimble_variations.Rmd.orig | 2 runMCMCbtadjust-1.1.3/runMCMCbtadjust/vignettes/runMCMCbtadjust_Presentation.Rmd |only runMCMCbtadjust-1.1.3/runMCMCbtadjust/vignettes/runMCMCbtadjust_Presentation.Rmd.orig |only runMCMCbtadjust-1.1.3/runMCMCbtadjust/vignettes/runMCMCbtadjust_extraCalculations.Rmd | 53 runMCMCbtadjust-1.1.3/runMCMCbtadjust/vignettes/runMCMCbtadjust_extraCalculations.Rmd.orig | 2 39 files changed, 3553 insertions(+), 1896 deletions(-)
More information about runMCMCbtadjust at CRAN
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Title: Event/Timeline Prediction Model Based on Piecewise Exponential
Description: Efficient algorithm for estimating piecewise exponential hazard models for right-censored data, and is useful for reliable power calculation, study design, and event/timeline prediction for study monitoring.
Author: Tianchen Xu [aut, cre]
Maintainer: Tianchen Xu <zjph602xutianchen@gmail.com>
Diff between PwePred versions 1.1.0 dated 2026-03-21 and 1.1.1 dated 2026-03-24
DESCRIPTION | 9 +++++---- MD5 | 14 ++++++++++---- NAMESPACE | 5 +++++ R/acc.R | 3 +-- data |only inst/NEWS.Rd | 15 +++++++++++---- man/pwe_data.Rd |only man/pwe_data_robust_tail.Rd |only man/ruppert_ipd.Rd |only 9 files changed, 32 insertions(+), 14 deletions(-)
Title: Partial Least Squares (PLS) Data Analysis Methods
Description: Different methods for PLS analysis of one or two data tables such as Tucker's Inter-Battery, NIPALS, SIMPLS, SIMPLS-CA, PLS Regression, and PLS Canonical Analysis. The main reference for this software is the awesome book (in French) 'La Regression PLS: Theorie et Pratique' by Michel Tenenhaus.
Author: Frederic Bertrand [cre] ,
Gaston Sanchez [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between plsdepot versions 0.3.0 dated 2025-09-26 and 0.3.1 dated 2026-03-24
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- R/plot.plsreg1.R | 6 ++++-- R/plsreg1.R | 27 ++++++++++++++++----------- man/plsreg1.Rd | 8 +++----- tests/testthat/test-plsreg-behavior.R | 24 ++++++++++++++++++++++++ 6 files changed, 58 insertions(+), 29 deletions(-)
Title: Download Sea Ice Concentration Data from the NSIDC Climate Data
Record
Description: Programmatic access to NSIDC's sea ice concentration CDR versions 4 and 5 <https://nsidc.org/data/g02135/versions/4> via its ERDAPP server and Sea Ice index <https://nsidc.org/data/g02135/versions/4>. Supports caching results and optional fixes for some inconsistencies of the raw files.
Author: Elio Campitelli [cre, aut, cph]
Maintainer: Elio Campitelli <eliocampitelli@gmail.com>
Diff between icecdr versions 1.0.0 dated 2026-03-16 and 1.1.0 dated 2026-03-24
DESCRIPTION | 11 ++++++----- MD5 | 29 ++++++++++++++++++----------- NAMESPACE | 1 + NEWS.md | 11 ++++++++--- R/cdr.R | 21 +++------------------ R/sea_ice_index.R |only R/utils.R |only README.md | 27 ++++++++++++++++++--------- man/cdr.Rd | 2 +- man/convenience.Rd | 8 ++++---- man/figures/README-unnamed-chunk-3-1.png |binary man/icecdr-package.Rd | 3 ++- man/sea_ice_index.Rd |only tests/testthat/_vcr/sea_ice_index.yml |only tests/testthat/_vcr/sea_index_daily.yml |only tests/testthat/_vcr/sea_index_monthly.yml |only tests/testthat/test-cdr.R | 11 +++++++---- tests/testthat/test-fix.R | 20 +++----------------- tests/testthat/test-sea_ice_index.R |only 19 files changed, 71 insertions(+), 73 deletions(-)
Title: Access Men's Basketball Play by Play Data
Description: A utility to quickly obtain clean and tidy men's
basketball play by play data. Provides functions to access
live play by play and box score data from ESPN<https://www.espn.com> with shot locations
when available. It is also a full NBA Stats API<https://www.nba.com/stats/> wrapper.
It is also a scraping and aggregating interface for Ken Pomeroy's
men's college basketball statistics website<https://kenpom.com>. It provides users with an
active subscription the capability to scrape the website tables and
analyze the data for themselves.
Author: Saiem Gilani [aut, cre] ,
Jason Lee [ctb],
Billy Fryer [ctb],
Ross Drucker [ctb],
Vladislav Shufinskiy [ctb]
Maintainer: Saiem Gilani <saiem.gilani@gmail.com>
Diff between hoopR versions 2.1.0 dated 2023-11-25 and 3.0.0 dated 2026-03-24
DESCRIPTION | 31 MD5 | 892 ++-- NAMESPACE | 31 NEWS.md | 206 + R/espn_mbb_data.R | 969 +++-- R/espn_mbb_wp.R | 67 R/espn_nba_data.R | 2263 ++++++++---- R/espn_nba_wp.R | 24 R/kp_box_tables.R | 260 - R/kp_historical_tables.R | 30 R/kp_misc_stats.R | 260 - R/kp_ratings_tables.R | 726 ++- R/kp_team_tables.R | 63 R/load_mbb.R | 217 - R/load_nba.R | 96 R/nba_data_pbp.R | 60 R/nba_stats_boxscore.R | 86 R/nba_stats_boxscore_v3.R | 726 +++ R/nba_stats_cume.R | 8 R/nba_stats_draft.R | 81 R/nba_stats_franchise.R | 8 R/nba_stats_hustle.R | 9 R/nba_stats_leaders.R | 301 + R/nba_stats_league.R | 141 R/nba_stats_league_dash.R | 26 R/nba_stats_lineups.R | 13 R/nba_stats_pbp.R | 1157 +++++- R/nba_stats_player.R | 505 +- R/nba_stats_player_dash.R | 26 R/nba_stats_roster.R | 73 R/nba_stats_scoreboard.R | 322 + R/nba_stats_shotchart.R | 7 R/nba_stats_team.R | 1056 +++-- R/nba_stats_team_dash.R | 24 R/nba_stats_video.R | 80 R/nbagl_pbp.R | 805 +++- R/nbagl_players.R | 124 R/nbagl_schedule.R | 146 R/nbagl_standings.R | 100 R/ncaa_mbb_data.R | 82 R/utils.R | 290 - R/utils_nba_stats.R | 443 +- README.md | 48 data/teams_links.rda |binary man/check_status.Rd | 2 man/csv_from_url.Rd | 16 man/dot-build_player_roster.Rd |only man/dot-kp_get_page.Rd |only man/dot-kp_headers_list.Rd |only man/dot-kp_request.Rd |only man/dot-players_on_court.Rd | 4 man/dot-players_on_court_v3.Rd |only man/dot-resp_text.Rd |only man/dot-retry_request.Rd |only man/dot-v3_to_v2_format.Rd |only man/espn_mbb_betting.Rd | 3 man/espn_mbb_conferences.Rd | 3 man/espn_mbb_game_all.Rd | 3 man/espn_mbb_game_rosters.Rd | 3 man/espn_mbb_pbp.Rd | 3 man/espn_mbb_player_box.Rd | 3 man/espn_mbb_player_stats.Rd | 3 man/espn_mbb_rankings.Rd | 3 man/espn_mbb_scoreboard.Rd | 3 man/espn_mbb_standings.Rd | 3 man/espn_mbb_team_box.Rd | 3 man/espn_mbb_team_current_roster.Rd |only man/espn_mbb_team_stats.Rd | 3 man/espn_mbb_teams.Rd | 3 man/espn_mbb_wp.Rd | 3 man/espn_nba_betting.Rd | 3 man/espn_nba_game_all.Rd | 3 man/espn_nba_game_rosters.Rd | 3 man/espn_nba_pbp.Rd | 3 man/espn_nba_player_box.Rd | 3 man/espn_nba_player_stats.Rd | 3 man/espn_nba_scoreboard.Rd | 3 man/espn_nba_standings.Rd | 3 man/espn_nba_team_box.Rd | 3 man/espn_nba_team_current_roster.Rd |only man/espn_nba_team_stats.Rd | 3 man/espn_nba_teams.Rd | 3 man/espn_nba_wp.Rd | 3 man/hoopR-package.Rd | 2 man/kp_arenas.Rd | 2 man/kp_box.Rd | 2 man/kp_coach_history.Rd | 2 man/kp_confhistory.Rd | 2 man/kp_confstats.Rd | 2 man/kp_efficiency.Rd | 2 man/kp_fanmatch.Rd | 2 man/kp_foul_trouble.Rd | 2 man/kp_fourfactors.Rd | 2 man/kp_game_attrs.Rd | 2 man/kp_hca.Rd | 2 man/kp_height.Rd | 2 man/kp_kpoy.Rd | 2 man/kp_officials.Rd | 2 man/kp_playerstats.Rd | 2 man/kp_pointdist.Rd | 2 man/kp_pomeroy_archive_ratings.Rd | 2 man/kp_pomeroy_ratings.Rd | 2 man/kp_program_ratings.Rd | 2 man/kp_referee.Rd | 2 man/kp_team_history.Rd | 2 man/kp_team_players.Rd | 2 man/kp_teamstats.Rd | 2 man/kp_trends.Rd | 2 man/kp_user_pw.Rd | 3 man/kp_winprob.Rd | 2 man/load_nba_pbp.Rd | 2 man/load_nba_player_box.Rd | 2 man/load_nba_schedule.Rd | 2 man/load_nba_team_box.Rd | 2 man/nba_alltimeleadersgrids.Rd | 2 man/nba_assistleaders.Rd | 2 man/nba_assisttracker.Rd | 2 man/nba_boxscoreadvancedv3.Rd | 443 +- man/nba_boxscoredefensivev2.Rd | 315 - man/nba_boxscorefourfactorsv2.Rd | 6 man/nba_boxscorefourfactorsv3.Rd | 329 - man/nba_boxscorehustlev2.Rd | 357 - man/nba_boxscorematchupsv3.Rd | 329 - man/nba_boxscoremiscv2.Rd | 6 man/nba_boxscoremiscv3.Rd | 359 - man/nba_boxscoreplayertrackv2.Rd | 6 man/nba_boxscoreplayertrackv3.Rd | 419 +- man/nba_boxscorescoringv2.Rd | 6 man/nba_boxscorescoringv3.Rd | 383 +- man/nba_boxscoresummaryv3.Rd |only man/nba_boxscoretraditionalv3.Rd | 675 +-- man/nba_boxscoreusagev2.Rd | 6 man/nba_boxscoreusagev3.Rd | 407 +- man/nba_commonallplayers.Rd | 3 man/nba_commonplayerinfo.Rd | 3 man/nba_commonteamroster.Rd | 3 man/nba_commonteamyears.Rd |only man/nba_cumestatsplayer.Rd | 4 man/nba_cumestatsplayergames.Rd | 4 man/nba_cumestatsteam.Rd | 2 man/nba_cumestatsteamgames.Rd | 2 man/nba_data_pbp.Rd | 3 man/nba_defensehub.Rd | 2 man/nba_dunkscoreleaders.Rd |only man/nba_fantasywidget.Rd | 4 man/nba_franchisehistory.Rd | 2 man/nba_franchiseplayers.Rd | 4 man/nba_gravityleaders.Rd |only man/nba_homepageleaders.Rd | 8 man/nba_homepagev2.Rd | 8 man/nba_hustlestatsboxscore.Rd | 6 man/nba_infographicfanduelplayer.Rd | 220 - man/nba_iststandings.Rd |only man/nba_leaderstiles.Rd | 8 man/nba_leaguedashlineups.Rd | 3 man/nba_leaguedashoppptshot.Rd | 3 man/nba_leaguedashplayerbiostats.Rd | 9 man/nba_leaguedashplayerclutch.Rd | 9 man/nba_leaguedashplayerptshot.Rd | 3 man/nba_leaguedashplayershotlocations.Rd | 9 man/nba_leaguedashplayerstats.Rd | 9 man/nba_leaguedashptdefend.Rd | 3 man/nba_leaguedashptstats.Rd | 3 man/nba_leaguedashptteamdefend.Rd | 3 man/nba_leaguedashteamclutch.Rd | 3 man/nba_leaguedashteamptshot.Rd | 3 man/nba_leaguedashteamshotlocations.Rd | 3 man/nba_leaguedashteamstats.Rd | 6 man/nba_leaguegamefinder.Rd | 3 man/nba_leaguegamelog.Rd | 3 man/nba_leaguehustlestatsplayer.Rd | 4 man/nba_leaguehustlestatsplayerleaders.Rd | 4 man/nba_leaguehustlestatsteam.Rd | 2 man/nba_leaguehustlestatsteamleaders.Rd | 2 man/nba_leagueleaders.Rd | 2 man/nba_leaguelineupviz.Rd | 3 man/nba_leagueplayerondetails.Rd | 9 man/nba_leagueseasonmatchups.Rd | 9 man/nba_leaguestandings.Rd | 1 man/nba_leaguestandingsv3.Rd | 1 man/nba_live_pbp.Rd | 3 man/nba_matchupsrollup.Rd | 9 man/nba_pbp.Rd | 26 man/nba_pbps.Rd | 18 man/nba_playbyplayv3.Rd |only man/nba_playerawards.Rd | 6 man/nba_playercareerbycollege.Rd | 8 man/nba_playercareerbycollegerollup.Rd | 4 man/nba_playercareerstats.Rd | 6 man/nba_playercompare.Rd | 6 man/nba_playerdashboardbyclutch.Rd | 6 man/nba_playerdashboardbygamesplits.Rd | 6 man/nba_playerdashboardbygeneralsplits.Rd | 6 man/nba_playerdashboardbylastngames.Rd | 6 man/nba_playerdashboardbyopponent.Rd | 6 man/nba_playerdashboardbyshootingsplits.Rd | 6 man/nba_playerdashboardbyteamperformance.Rd | 6 man/nba_playerdashboardbyyearoveryear.Rd | 6 man/nba_playerdashptpass.Rd | 6 man/nba_playerdashptreb.Rd | 6 man/nba_playerdashptshotdefend.Rd | 6 man/nba_playerdashptshots.Rd | 6 man/nba_playerestimatedmetrics.Rd | 6 man/nba_playerfantasyprofile.Rd | 4 man/nba_playerfantasyprofilebargraph.Rd | 4 man/nba_playergamelog.Rd | 4 man/nba_playergamelogs.Rd | 4 man/nba_playergamestreakfinder.Rd | 6 man/nba_playerheadshot.Rd | 6 man/nba_playerindex.Rd | 6 man/nba_playernextngames.Rd | 10 man/nba_playerprofilev2.Rd | 6 man/nba_playervsplayer.Rd | 6 man/nba_playoffpicture.Rd | 3 man/nba_schedule.Rd | 3 man/nba_scheduleleaguev2int.Rd |only man/nba_scoreboard.Rd | 5 man/nba_scoreboardv2.Rd | 7 man/nba_scoreboardv3.Rd | 241 - man/nba_shotchartleaguewide.Rd | 3 man/nba_teamandplayersvsplayers.Rd |only man/nba_teamdashboardbyclutch.Rd | 3 man/nba_teamdashboardbygamesplits.Rd | 3 man/nba_teamdashboardbygeneralsplits.Rd | 3 man/nba_teamdashboardbylastngames.Rd | 3 man/nba_teamdashboardbyopponent.Rd | 3 man/nba_teamdashboardbyshootingsplits.Rd | 3 man/nba_teamdashboardbyteamperformance.Rd | 3 man/nba_teamdashboardbyyearoveryear.Rd | 3 man/nba_teamdashlineups.Rd | 3 man/nba_teamdashptpass.Rd | 3 man/nba_teamdashptreb.Rd | 3 man/nba_teamdashptshots.Rd | 3 man/nba_teamdetails.Rd | 3 man/nba_teamestimatedmetrics.Rd | 3 man/nba_teamgamelog.Rd | 1 man/nba_teamgamelogs.Rd | 1 man/nba_teamgamestreakfinder.Rd | 9 man/nba_teamhistoricalleaders.Rd | 9 man/nba_teaminfocommon.Rd | 3 man/nba_teamplayerdashboard.Rd | 3 man/nba_teamplayeronoffdetails.Rd | 3 man/nba_teamplayeronoffsummary.Rd | 3 man/nba_teams.Rd | 3 man/nba_teamvsplayer.Rd | 3 man/nba_teamyearbyyearstats.Rd | 3 man/nba_todays_scoreboard.Rd | 199 - man/nba_videodetails.Rd | 7 man/nba_videodetailsasset.Rd | 1 man/nba_videoevents.Rd | 3 man/nba_videoeventsasset.Rd |only man/nba_videostatus.Rd | 5 man/nba_winprobabilitypbp.Rd | 9 man/nbagl_live_boxscore.Rd |only man/nbagl_live_pbp.Rd |only man/nbagl_pbp.Rd | 66 man/nbagl_players.Rd | 101 man/nbagl_schedule.Rd | 71 man/nbagl_standings.Rd | 69 man/ncaa_mbb_NET_rankings.Rd | 2 man/request_with_proxy.Rd | 4 tests/testthat.R | 2 tests/testthat/helper-skip.R | 40 tests/testthat/test-espn_mbb_betting.R | 2 tests/testthat/test-espn_mbb_conferences.R | 5 tests/testthat/test-espn_mbb_game_rosters.R | 4 tests/testthat/test-espn_mbb_pbp.R | 6 tests/testthat/test-espn_mbb_pbp_all.R | 28 tests/testthat/test-espn_mbb_player_box.R | 5 tests/testthat/test-espn_mbb_player_stats.R | 4 tests/testthat/test-espn_mbb_rankings.R | 4 tests/testthat/test-espn_mbb_scoreboard.R | 4 tests/testthat/test-espn_mbb_standings.R | 4 tests/testthat/test-espn_mbb_team_box.R | 4 tests/testthat/test-espn_mbb_team_stats.R | 4 tests/testthat/test-espn_mbb_teams.R | 4 tests/testthat/test-espn_mbb_wp.R | 4 tests/testthat/test-espn_nba_betting.R | 113 tests/testthat/test-espn_nba_game_rosters.R | 4 tests/testthat/test-espn_nba_pbp.R | 4 tests/testthat/test-espn_nba_pbp_all.R | 8 tests/testthat/test-espn_nba_player_box.R | 4 tests/testthat/test-espn_nba_player_stats.R | 4 tests/testthat/test-espn_nba_scoreboard.R | 4 tests/testthat/test-espn_nba_standings.R | 4 tests/testthat/test-espn_nba_team_box.R | 4 tests/testthat/test-espn_nba_team_stats.R | 4 tests/testthat/test-espn_nba_teams.R | 8 tests/testthat/test-espn_nba_wp.R | 4 tests/testthat/test-load_mbb_pbp.R | 5 tests/testthat/test-load_mbb_player_box.R | 4 tests/testthat/test-load_mbb_schedule.R | 5 tests/testthat/test-load_mbb_team_box.R | 4 tests/testthat/test-load_nba_pbp.R | 4 tests/testthat/test-load_nba_player_box.R | 4 tests/testthat/test-load_nba_schedule.R | 5 tests/testthat/test-load_nba_team_box.R | 4 tests/testthat/test-nba_alltimeleadersgrids.R | 41 tests/testthat/test-nba_assistleaders.R | 5 tests/testthat/test-nba_assisttracker.R | 5 tests/testthat/test-nba_boxscoreadvancedv2.R | 34 tests/testthat/test-nba_boxscoreadvancedv3.R | 11 tests/testthat/test-nba_boxscoredefensive.R | 6 tests/testthat/test-nba_boxscoredefensivev2.R | 11 tests/testthat/test-nba_boxscorefourfactorsv2.R | 9 tests/testthat/test-nba_boxscorefourfactorsv3.R | 11 tests/testthat/test-nba_boxscorehustlev2.R | 12 tests/testthat/test-nba_boxscorematchups.R | 6 tests/testthat/test-nba_boxscorematchupsv3.R | 7 tests/testthat/test-nba_boxscoremiscv2.R | 9 tests/testthat/test-nba_boxscoremiscv3.R | 11 tests/testthat/test-nba_boxscoreplayertrackv2.R | 9 tests/testthat/test-nba_boxscoreplayertrackv3.R | 11 tests/testthat/test-nba_boxscorescoringv2.R | 9 tests/testthat/test-nba_boxscorescoringv3.R | 11 tests/testthat/test-nba_boxscoresimilarityscore.R | 6 tests/testthat/test-nba_boxscoresummaryv2.R | 22 tests/testthat/test-nba_boxscoresummaryv3.R |only tests/testthat/test-nba_boxscoretraditionalv2.R | 10 tests/testthat/test-nba_boxscoretraditionalv3.R | 19 tests/testthat/test-nba_boxscoreusagev2.R | 9 tests/testthat/test-nba_boxscoreusagev3.R | 11 tests/testthat/test-nba_commonallplayers.R | 5 tests/testthat/test-nba_commonplayerinfo.R | 9 tests/testthat/test-nba_commonplayoffseries.R | 5 tests/testthat/test-nba_commonteamroster.R | 7 tests/testthat/test-nba_commonteamyears.R |only tests/testthat/test-nba_cumestatsplayer.R | 7 tests/testthat/test-nba_cumestatsplayergames.R | 5 tests/testthat/test-nba_cumestatsteam.R | 7 tests/testthat/test-nba_cumestatsteamgames.R | 5 tests/testthat/test-nba_data_pbp.R | 40 tests/testthat/test-nba_defensehub.R | 18 tests/testthat/test-nba_draftboard.R | 9 tests/testthat/test-nba_draftcombinedrillresults.R | 5 tests/testthat/test-nba_draftcombinenonstationaryshooting.R | 5 tests/testthat/test-nba_draftcombineplayeranthro.R | 5 tests/testthat/test-nba_draftcombinespotshooting.R | 5 tests/testthat/test-nba_draftcombinestats.R | 5 tests/testthat/test-nba_drafthistory.R | 5 tests/testthat/test-nba_dunkscoreleaders.R |only tests/testthat/test-nba_fantasywidget.R | 5 tests/testthat/test-nba_franchisehistory.R | 7 tests/testthat/test-nba_franchiseleaders.R | 5 tests/testthat/test-nba_franchiseleaderswrank.R | 5 tests/testthat/test-nba_franchiseplayers.R | 5 tests/testthat/test-nba_gamerotation.R | 8 tests/testthat/test-nba_glalumboxscoresimilarityscore.R | 6 tests/testthat/test-nba_gravityleaders.R |only tests/testthat/test-nba_homepageleaders.R | 10 tests/testthat/test-nba_homepagev2.R | 20 tests/testthat/test-nba_hustlestatsboxscore.R | 10 tests/testthat/test-nba_infographicfanduelplayer.R | 5 tests/testthat/test-nba_iststandings.R |only tests/testthat/test-nba_leaderstiles.R | 12 tests/testthat/test-nba_leaguedashlineups.R | 9 tests/testthat/test-nba_leaguedashoppptshot.R | 5 tests/testthat/test-nba_leaguedashplayerbiostats.R | 5 tests/testthat/test-nba_leaguedashplayerclutch.R | 5 tests/testthat/test-nba_leaguedashplayerptshot.R | 5 tests/testthat/test-nba_leaguedashplayershotlocations.R | 5 tests/testthat/test-nba_leaguedashplayerstats.R | 5 tests/testthat/test-nba_leaguedashptdefend.R | 4 tests/testthat/test-nba_leaguedashptstats.R | 4 tests/testthat/test-nba_leaguedashptteamdefend.R | 4 tests/testthat/test-nba_leaguedashteamclutch.R | 4 tests/testthat/test-nba_leaguedashteamptshot.R | 4 tests/testthat/test-nba_leaguedashteamshotlocations.R | 4 tests/testthat/test-nba_leaguedashteamstats.R | 4 tests/testthat/test-nba_leaguegamefinder.R | 4 tests/testthat/test-nba_leaguegamelog.R | 4 tests/testthat/test-nba_leaguehustlestatsplayer.R | 4 tests/testthat/test-nba_leaguehustlestatsplayerleaders.R | 14 tests/testthat/test-nba_leaguehustlestatsteam.R | 4 tests/testthat/test-nba_leaguehustlestatsteamleaders.R | 16 tests/testthat/test-nba_leagueleaders.R | 4 tests/testthat/test-nba_leaguelineupviz.R | 4 tests/testthat/test-nba_leagueplayerondetails.R | 4 tests/testthat/test-nba_leagueseasonmatchups.R | 4 tests/testthat/test-nba_leaguestandings.R | 4 tests/testthat/test-nba_leaguestandingsv3.R | 2 tests/testthat/test-nba_live_boxscore.R | 20 tests/testthat/test-nba_live_pbp.R | 4 tests/testthat/test-nba_matchupsrollup.R | 4 tests/testthat/test-nba_pbp.R | 6 tests/testthat/test-nba_pbps.R | 6 tests/testthat/test-nba_playbyplayv3.R |only tests/testthat/test-nba_playerawards.R | 4 tests/testthat/test-nba_playercareerbycollege.R | 5 tests/testthat/test-nba_playercareerbycollegerollup.R | 10 tests/testthat/test-nba_playercareerstats.R | 32 tests/testthat/test-nba_playercompare.R | 6 tests/testthat/test-nba_playerdashboardbyclutch.R | 24 tests/testthat/test-nba_playerdashboardbygamesplits.R | 12 tests/testthat/test-nba_playerdashboardbygeneralsplits.R | 16 tests/testthat/test-nba_playerdashboardbylastngames.R | 14 tests/testthat/test-nba_playerdashboardbyopponent.R | 10 tests/testthat/test-nba_playerdashboardbyshootingsplits.R | 18 tests/testthat/test-nba_playerdashboardbyteamperformance.R | 10 tests/testthat/test-nba_playerdashboardbyyearoveryear.R | 6 tests/testthat/test-nba_playerdashptpass.R | 5 tests/testthat/test-nba_playerdashptshotdefend.R | 5 tests/testthat/test-nba_playerdashptshots.R | 15 tests/testthat/test-nba_playerestimatedmetrics.R | 3 tests/testthat/test-nba_playerfantasyprofile.R | 11 tests/testthat/test-nba_playerfantasyprofilebargraph.R | 5 tests/testthat/test-nba_playergamelog.R | 3 tests/testthat/test-nba_playergamelogs.R | 1 tests/testthat/test-nba_playergamestreakfinder.R | 3 tests/testthat/test-nba_playerindex.R | 3 tests/testthat/test-nba_playernextngames.R | 4 tests/testthat/test-nba_playerprofilev2.R | 41 tests/testthat/test-nba_playervsplayer.R | 21 tests/testthat/test-nba_playoffpicture.R | 13 tests/testthat/test-nba_schedule.R | 3 tests/testthat/test-nba_scheduleleaguev2int.R |only tests/testthat/test-nba_scoreboard.R | 16 tests/testthat/test-nba_scoreboardv2.R | 22 tests/testthat/test-nba_scoreboardv3.R | 3 tests/testthat/test-nba_shotchartdetail.R | 5 tests/testthat/test-nba_shotchartleaguewide.R | 3 tests/testthat/test-nba_shotchartlineupdetail.R | 5 tests/testthat/test-nba_synergyplaytypes.R | 3 tests/testthat/test-nba_teamandplayersvsplayers.R |only tests/testthat/test-nba_teamdashboardbyclutch.R | 23 tests/testthat/test-nba_teamdashboardbygamesplits.R | 11 tests/testthat/test-nba_teamdashboardbygeneralsplits.R | 13 tests/testthat/test-nba_teamdashboardbylastngames.R | 13 tests/testthat/test-nba_teamdashboardbyopponent.R | 9 tests/testthat/test-nba_teamdashboardbyshootingsplits.R | 15 tests/testthat/test-nba_teamdashboardbyteamperformance.R | 9 tests/testthat/test-nba_teamdashboardbyyearoveryear.R | 5 tests/testthat/test-nba_teamdashlineups.R | 9 tests/testthat/test-nba_teamdashptpass.R | 5 tests/testthat/test-nba_teamdashptreb.R | 11 tests/testthat/test-nba_teamdashptshots.R | 13 tests/testthat/test-nba_teamdetails.R | 17 tests/testthat/test-nba_teamestimatedmetrics.R | 3 tests/testthat/test-nba_teamgamelog.R | 3 tests/testthat/test-nba_teamgamelogs.R | 1 tests/testthat/test-nba_teamgamestreakfinder.R | 4 tests/testthat/test-nba_teamhistoricalleaders.R | 4 tests/testthat/test-nba_teaminfocommon.R | 7 tests/testthat/test-nba_teamplayerdashboard.R | 5 tests/testthat/test-nba_teamplayeronoffdetails.R | 7 tests/testthat/test-nba_teamplayeronoffsummary.R | 7 tests/testthat/test-nba_teams.R | 3 tests/testthat/test-nba_teamvsplayer.R | 19 tests/testthat/test-nba_teamyearbyyearstats.R | 3 tests/testthat/test-nba_todays_scoreboard.R | 3 tests/testthat/test-nba_videodetails.R | 6 tests/testthat/test-nba_videodetailsasset.R | 5 tests/testthat/test-nba_videoevents.R | 4 tests/testthat/test-nba_videoeventsasset.R |only tests/testthat/test-nba_videostatus.R | 2 tests/testthat/test-nba_winprobabilitypbp.R | 6 tests/testthat/test-nbagl_pbp.R | 62 tests/testthat/test-nbagl_players.R | 57 tests/testthat/test-nbagl_schedule.R | 61 tests/testthat/test-nbagl_standings.R | 57 tests/testthat/test-ncaa_mbb_NET_rankings.R | 2 tests/testthat/test-ncaa_mbb_teams.R | 9 462 files changed, 13105 insertions(+), 7384 deletions(-)
Title: Evaluation Platform in Chronic Obstructive Pulmonary Disease
Description: Evaluation Platform in Chronic Obstructive Pulmonary Disease (EPIC) is a Discrete Event Simulation (DES) model that simulates health outcomes of patients with Chronic Obstructive Pulmonary Disease (COPD) based on demographics and individual-level risk factors, based on the model published in Sadatsafavi et al. (2019) <doi:10.1177/0272989X18824098>.
Author: Mohsen Sadatsafavi [aut, cph],
Amin Adibi [aut, cre],
Kate Johnson [aut]
Maintainer: Amin Adibi <adibi@alumni.ubc.ca>
This is a re-admission after prior archival of version 1.0.0 dated 2026-03-10
Diff between epicR versions 1.0.0 dated 2026-03-10 and 1.0.1 dated 2026-03-24
DESCRIPTION | 6 - MD5 | 12 +- build/vignette.rds |binary inst/doc/InputsOutputsStructure.html | 189 +++++++++++++++++------------------ src/epic_model.h | 1 src/model.cpp | 2 src/model_events.cpp | 28 ++--- 7 files changed, 122 insertions(+), 116 deletions(-)
Title: Clustering of Datasets
Description: Hierarchical and partitioning algorithms to cluster blocks of variables. The partitioning algorithm includes an option called noise cluster to set aside atypical blocks of variables. Different thresholds per cluster can be sets. The CLUSTATIS method (for quantitative blocks) (Llobell, Cariou, Vigneau, Labenne & Qannari (2020) <doi:10.1016/j.foodqual.2018.05.013>, Llobell, Vigneau & Qannari (2019) <doi:10.1016/j.foodqual.2019.02.017>) and the CLUSCATA method (for Check-All-That-Apply data) (Llobell, Cariou, Vigneau, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2018.09.006>, Llobell, Giacalone, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2019.05.017>) are the core of this package. The CATATIS methods allows to compute some indices and tests to control the quality of CATA data (Llobell, Bonnet & Giacalone (2024) <doi:10.1111/joss.12941>) . Multivariate analysis and clustering of subjects for quantitative multiblock data, CATA, RA [...truncated...]
Author: Fabien Llobell [aut, cre] ,
Evelyne Vigneau [ctb] ,
Veronique Cariou [ctb] ,
El Mostafa Qannari [ctb]
Maintainer: Fabien Llobell <fabienllobellresearch@gmail.com>
Diff between ClustBlock versions 4.1.1 dated 2025-06-11 and 5.0.0 dated 2026-03-24
DESCRIPTION | 14 +++++----- MD5 | 56 +++++++++++++++++++++++++++-------------- NAMESPACE | 5 +++ NEWS | 4 +- R/ClusMB.R | 4 ++ R/cata_ryebread.R |only R/cluscata.R | 6 +--- R/cluscata_kmeans_liking.R |only R/cluscata_liking.R |only R/clustatis.R | 2 + R/clustatis_FreeSort.R | 1 R/combinCATALiking.R |only R/crit_cataMean.R |only R/liking_ryebread.R |only R/plot.cluscata.R | 4 -- R/plot.cluscata_liking.R |only R/plot.clusrows.R | 2 + R/preprocess_FreeSort.R | 2 - R/print.cluscata_liking.R |only R/straw.R | 2 - R/summary.cluscata_liking.R |only data/cata_ryebread.rda |only data/liking_ryebread.rda |only inst/CITATION | 6 ++-- man/ClusMB.Rd | 2 + man/ClustBlock-package.Rd | 17 ++++++++++-- man/cata_ryebread.Rd |only man/cluscata.Rd | 2 - man/cluscata_liking.Rd |only man/clustatis.Rd | 2 + man/clustatis_FreeSort.Rd | 1 man/combinCATALiking.Rd |only man/liking_ryebread.Rd |only man/plot.clusRows.Rd | 2 + man/plot.cluscata_liking.Rd |only man/print.cluscata_liking.Rd |only man/straw.Rd | 2 - man/summary.cluscata_liking.Rd |only 38 files changed, 88 insertions(+), 48 deletions(-)
Title: Reliability Analysis Methods for Structural Engineering
Description: Calculate the failure probability of civil engineering problems with Level I up to Level III Methods. Have fun and enjoy. References: Spaethe (1991, ISBN:3-211-82348-4) "Die Sicherheit tragender Baukonstruktionen", AU,BECK (2001) "Estimation of small failure probabilities in high dimensions by subset simulation." <doi:10.1016/S0266-8920(01)00019-4>, Breitung (1989) "Asymptotic approximations for probability integrals." <doi:10.1016/0266-8920(89)90024-6>.
Author: Konstantin Nille-Hauf [aut],
Tania Feiri [aut],
Marcus Ricker [aut],
Til Lux [aut, cre]
Maintainer: Til Lux <til.lux@tu-dortmund.de>
Diff between TesiproV versions 0.9.2 dated 2022-03-25 and 0.9.5 dated 2026-03-24
TesiproV-0.9.2/TesiproV/R/MCIS.R |only TesiproV-0.9.2/TesiproV/R/MCSUS.R |only TesiproV-0.9.2/TesiproV/R/MVSOFM.R |only TesiproV-0.9.2/TesiproV/man/TesiproV.Rd |only TesiproV-0.9.2/TesiproV/man/dlt.Rd |only TesiproV-0.9.2/TesiproV/man/plt.Rd |only TesiproV-0.9.2/TesiproV/man/qlt.Rd |only TesiproV-0.9.2/TesiproV/man/rlt.Rd |only TesiproV-0.9.2/TesiproV/tests/testthat/test_methods.R |only TesiproV-0.9.5/TesiproV/DESCRIPTION | 37 TesiproV-0.9.5/TesiproV/LICENSE | 4 TesiproV-0.9.5/TesiproV/MD5 | 113 TesiproV-0.9.5/TesiproV/NAMESPACE | 98 TesiproV-0.9.5/TesiproV/NEWS.md | 63 TesiproV-0.9.5/TesiproV/R/FORM.R | 446 +- TesiproV-0.9.5/TesiproV/R/MCIS_helpers.R |only TesiproV-0.9.5/TesiproV/R/MC_CRUDE.R | 456 +- TesiproV-0.9.5/TesiproV/R/MC_IS.R |only TesiproV-0.9.5/TesiproV/R/MC_SubSam.R |only TesiproV-0.9.5/TesiproV/R/MVFOSM.R |only TesiproV-0.9.5/TesiproV/R/SORM.R | 79 TesiproV-0.9.5/TesiproV/R/StudentT.R |only TesiproV-0.9.5/TesiproV/R/TesiproV.R | 8 TesiproV-0.9.5/TesiproV/R/clsModelContainer.R | 2059 +++++++--- TesiproV-0.9.5/TesiproV/R/clsParam.R | 864 ++-- TesiproV-0.9.5/TesiproV/R/helper_debugPrint.R | 140 TesiproV-0.9.5/TesiproV/R/logStudentT.R | 200 TesiproV-0.9.5/TesiproV/R/zzz.R |only TesiproV-0.9.5/TesiproV/README.md | 133 TesiproV-0.9.5/TesiproV/build/vignette.rds |binary TesiproV-0.9.5/TesiproV/inst/doc/TesiproV-Vignette.R | 380 + TesiproV-0.9.5/TesiproV/inst/doc/TesiproV-Vignette.Rmd | 720 ++- TesiproV-0.9.5/TesiproV/inst/doc/TesiproV-Vignette.html | 1618 +++++-- TesiproV-0.9.5/TesiproV/man/FORM.Rd | 64 TesiproV-0.9.5/TesiproV/man/Internal-helper-functions-for-MC_IS-open-paren-close-paren.Rd |only TesiproV-0.9.5/TesiproV/man/LogStudentT.Rd |only TesiproV-0.9.5/TesiproV/man/MC_CRUDE.Rd | 131 TesiproV-0.9.5/TesiproV/man/MC_IS.Rd | 324 + TesiproV-0.9.5/TesiproV/man/MC_IS_single.Rd |only TesiproV-0.9.5/TesiproV/man/MC_IS_system.Rd |only TesiproV-0.9.5/TesiproV/man/MC_SubSam.Rd | 64 TesiproV-0.9.5/TesiproV/man/MVFOSM.Rd | 32 TesiproV-0.9.5/TesiproV/man/PARAM_BASEVAR-class.Rd | 68 TesiproV-0.9.5/TesiproV/man/PARAM_DETVAR-class.Rd | 55 TesiproV-0.9.5/TesiproV/man/PARAM_LSF-class.Rd | 31 TesiproV-0.9.5/TesiproV/man/PROB_BASEVAR-class.Rd | 61 TesiproV-0.9.5/TesiproV/man/PROB_DETVAR-class.Rd | 73 TesiproV-0.9.5/TesiproV/man/PROB_MACHINE-class.Rd | 40 TesiproV-0.9.5/TesiproV/man/SORM.Rd | 78 TesiproV-0.9.5/TesiproV/man/SYS_LSF-class.Rd | 86 TesiproV-0.9.5/TesiproV/man/SYS_PARAM-class.Rd | 106 TesiproV-0.9.5/TesiproV/man/SYS_PROB-class.Rd | 136 TesiproV-0.9.5/TesiproV/man/StudentT.Rd |only TesiproV-0.9.5/TesiproV/man/TesiproV-package.Rd |only TesiproV-0.9.5/TesiproV/man/as_record_df.Rd |only TesiproV-0.9.5/TesiproV/man/compute_weight_update.Rd |only TesiproV-0.9.5/TesiproV/man/debug.print.Rd | 19 TesiproV-0.9.5/TesiproV/man/dot-onLoad.Rd |only TesiproV-0.9.5/TesiproV/man/ensure_pkg.Rd |only TesiproV-0.9.5/TesiproV/man/init_rng_master.Rd |only TesiproV-0.9.5/TesiproV/man/is_empty.Rd |only TesiproV-0.9.5/TesiproV/man/is_missing.Rd |only TesiproV-0.9.5/TesiproV/man/make_ready_cluster.Rd |only TesiproV-0.9.5/TesiproV/man/make_recorders.Rd |only TesiproV-0.9.5/TesiproV/man/parallel_dispatch.Rd |only TesiproV-0.9.5/TesiproV/man/record_step.Rd |only TesiproV-0.9.5/TesiproV/man/resolve_future_seed.Rd |only TesiproV-0.9.5/TesiproV/man/set_cluster_rng.Rd |only TesiproV-0.9.5/TesiproV/tests/testthat/long_test_empdist.R |only TesiproV-0.9.5/TesiproV/tests/testthat/setup.R |only TesiproV-0.9.5/TesiproV/tests/testthat/startup.Rs |only TesiproV-0.9.5/TesiproV/tests/testthat/test_MCIS_system.R |only TesiproV-0.9.5/TesiproV/tests/testthat/test_Methods.R |only TesiproV-0.9.5/TesiproV/tests/testthat/test_Methods_addDist.R |only TesiproV-0.9.5/TesiproV/tests/testthat/test_Methods_lnorm_x0.R |only TesiproV-0.9.5/TesiproV/tests/testthat/test_basevars.R | 850 ++++ TesiproV-0.9.5/TesiproV/tests/testthat/test_methods_extra.R |only TesiproV-0.9.5/TesiproV/tests/testthat/test_seed.R |only TesiproV-0.9.5/TesiproV/vignettes/TesiproV-Vignette.Rmd | 720 ++- 79 files changed, 7457 insertions(+), 2899 deletions(-)
Title: Efficient Bayesian Inference for Dynamic Survival Models with
Shrinkage
Description: Efficient Markov chain Monte Carlo (MCMC) algorithms for fully
Bayesian estimation of dynamic survival models with shrinkage priors.
Details on the algorithms used are provided in Wagner (2011) <doi:10.1007/s11222-009-9164-5>,
Bitto and Frühwirth-Schnatter (2019) <doi:10.1016/j.jeconom.2018.11.006> and
Cadonna et al. (2020) <doi:10.3390/econometrics8020020>.
Author: Daniel Winkler [aut, cre],
Peter Knaus [aut]
Maintainer: Daniel Winkler <daniel.winkler@unsw.edu.au>
Diff between shrinkDSM versions 1.0.0 dated 2025-04-11 and 1.0.2 dated 2026-03-24
shrinkDSM-1.0.0/shrinkDSM/tests/testthat/Rplots.pdf |only shrinkDSM-1.0.2/shrinkDSM/DESCRIPTION | 14 +++++++------- shrinkDSM-1.0.2/shrinkDSM/MD5 | 15 +++++++-------- shrinkDSM-1.0.2/shrinkDSM/R/predict_shrinkDSM.R | 2 +- shrinkDSM-1.0.2/shrinkDSM/R/shrinkDSM.R | 13 ++++++++----- shrinkDSM-1.0.2/shrinkDSM/R/utilities_shrinkDSM.R | 2 +- shrinkDSM-1.0.2/shrinkDSM/man/plot.shrinkDSM_pred.Rd | 2 +- shrinkDSM-1.0.2/shrinkDSM/man/prep_tvinput.Rd | 2 +- shrinkDSM-1.0.2/shrinkDSM/man/shrinkDSM.Rd | 13 ++++++++----- 9 files changed, 34 insertions(+), 29 deletions(-)
Title: Data for the 'hglm' Package
Description: This data-only package was created for distributing data used in the examples of the 'hglm' package.
Author: Xia Shen [aut],
Lars Ronnegard [aut, cre],
Moudud Alam [aut]
Maintainer: Lars Ronnegard <lars.ronnegard@slu.se>
Diff between hglm.data versions 1.0-1 dated 2019-04-04 and 1.0-2 dated 2026-03-24
hglm.data-1.0-1/hglm.data/man/hglm.data-package.Rd |only hglm.data-1.0-2/hglm.data/DESCRIPTION | 18 ++++++++++++------ hglm.data-1.0-2/hglm.data/MD5 | 5 ++--- hglm.data-1.0-2/hglm.data/man/ohio.Rd | 14 +++++++------- 4 files changed, 21 insertions(+), 16 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative pipelines for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible pipelines concisely and compactly.
The methods in this package were influenced by the 'targets' R package.
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre] ,
Rudolf Siegel [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between tarchetypes versions 0.14.0 dated 2026-02-09 and 0.14.1 dated 2026-03-24
tarchetypes-0.14.0/tarchetypes/man/tar_quarto_files_get_source_files.Rd |only tarchetypes-0.14.1/tarchetypes/DESCRIPTION | 8 - tarchetypes-0.14.1/tarchetypes/MD5 | 9 -- tarchetypes-0.14.1/tarchetypes/NEWS.md | 4 tarchetypes-0.14.1/tarchetypes/R/tar_quarto_files.R | 45 ++++++++-- tarchetypes-0.14.1/tarchetypes/tests/testthat/helper-utils.R | 6 - 6 files changed, 54 insertions(+), 18 deletions(-)
Title: Multiscale Change-Point Inference
Description: Allows fitting of step-functions to univariate serial data where neither the number of jumps nor their positions is known by implementing the multiscale regression estimators SMUCE, simulataneous multiscale changepoint estimator, (K. Frick, A. Munk and H. Sieling, 2014) <doi:10.1111/rssb.12047> and HSMUCE, heterogeneous SMUCE, (F. Pein, H. Sieling and A. Munk, 2017) <doi:10.1111/rssb.12202>. In addition, confidence intervals for the change-point locations and bands for the unknown signal can be obtained.
Author: Pein Florian [aut, cre],
Thomas Hotz [aut],
Hannes Sieling [aut],
Timo Aspelmeier [ctb]
Maintainer: Pein Florian <f.pein@lancaster.ac.uk>
Diff between stepR versions 2.1-10 dated 2024-10-18 and 2.1-11 dated 2026-03-24
ChangeLog | 9 +++++++++ DESCRIPTION | 6 +++--- MD5 | 44 ++++++++++++++++++++++---------------------- inst/doc/StepR.Rnw | 2 +- inst/doc/StepR.pdf |binary man/computeBounds.Rd | 2 +- man/critVal.Rd | 2 +- man/stepFit.Rd | 2 +- man/stepR-package.Rd | 2 +- src/BinTree.h | 19 ++++++++++++------- src/Bounds.cpp | 18 +++++++++++------- src/Jump.h | 4 +++- src/Step.cpp | 30 ++++++++++++++++-------------- src/Step.h | 4 +++- src/StepBinom.cpp | 24 +++++++++++++----------- src/StepGauss.cpp | 30 ++++++++++++++++-------------- src/StepGaussCut.cpp | 30 ++++++++++++++++-------------- src/StepGaussInhibit.cpp | 18 ++++++++++-------- src/StepGaussVar.cpp | 24 +++++++++++++----------- src/StepPoisson.cpp | 24 +++++++++++++----------- src/TriArray.h | 32 +++++++++++++++++--------------- src/init.c | 4 +++- vignettes/StepR.Rnw | 2 +- 23 files changed, 186 insertions(+), 146 deletions(-)
Title: Encrypt and Decrypt Strings, R Objects and Files
Description: A consistent interface to encrypt and decrypt strings, R objects and files using symmetric and asymmetric key encryption.
Author: Komala Sheshachala Srikanth [aut, cre]
Maintainer: Komala Sheshachala Srikanth <sri.teach@gmail.com>
Diff between safer versions 0.2.1 dated 2018-07-24 and 0.2.2 dated 2026-03-24
DESCRIPTION | 20 ++++++++++---------- MD5 | 12 ++++++------ NEWS.md | 22 +++++++++++++++++----- R/string.R | 43 ++++++++++++++++++++++++++++++++++++------- README.md | 19 +++++++++++-------- man/decrypt_string.Rd | 5 ++++- man/encrypt_string.Rd | 5 ++++- 7 files changed, 88 insertions(+), 38 deletions(-)
Title: 'PLINK' 2 Binary (.pgen) Reader
Description: A thin wrapper over 'PLINK' 2's core libraries which provides an R
interface for reading .pgen files. A minimal .pvar loader is also
included. Chang et al. (2015) <doi:10.1186/s13742-015-0047-8>.
Author: Christopher Chang [aut, cre],
Eric Biggers [ctb, cph] ,
Yann Collet [ctb] ,
Meta Platforms, Inc. [cph] ,
Evan Nemerson [ctb, cph] ,
Przemyslaw Skibinski [ctb] ,
Nick Terrell [ctb]
Maintainer: Christopher Chang <chrchang@alumni.caltech.edu>
Diff between pgenlibr versions 0.5.5 dated 2026-03-11 and 0.6.0 dated 2026-03-24
pgenlibr-0.5.5/pgenlibr/inst/include |only pgenlibr-0.6.0/pgenlibr/DESCRIPTION | 8 pgenlibr-0.6.0/pgenlibr/MD5 | 943 +++++++++++++++---------------- pgenlibr-0.6.0/pgenlibr/NEWS.md | 10 pgenlibr-0.6.0/pgenlibr/configure | 22 pgenlibr-0.6.0/pgenlibr/configure.ac | 6 pgenlibr-0.6.0/pgenlibr/src/Makevars.in | 2 pgenlibr-0.6.0/pgenlibr/src/Makevars.win | 2 pgenlibr-0.6.0/pgenlibr/tools/include |only 9 files changed, 501 insertions(+), 492 deletions(-)
Title: L-Moments
Description: Functions related to L-moments: computation of L-moments
and trimmed L-moments of distributions and data samples; parameter
estimation; L-moment ratio diagram; plot vs. quantiles of an
extreme-value distribution.
Author: J. R. M. Hosking [aut, cre]
Maintainer: J. R. M. Hosking <jrmhosking@gmail.com>
Diff between lmom versions 3.2 dated 2024-09-30 and 3.3 dated 2026-03-24
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 5 +++++ inst/lmom-manual.pdf |binary man/lmom-package.Rd | 2 +- man/pelp.Rd | 2 +- src/lmomc.c | 11 +++++++++-- 7 files changed, 26 insertions(+), 14 deletions(-)
Title: Power Analyses for Interaction Effects in Cross-Sectional
Regressions
Description: Power analysis for regression models which test the interaction of
two or three independent variables on a single dependent variable. Includes options
for correlated interacting variables and specifying variable reliability.
Two-way interactions can include continuous, binary, or ordinal variables.
Power analyses can be done either analytically or via simulation. Includes
tools for simulating single data sets and visualizing power analysis results.
The primary functions are power_interaction_r2() and power_interaction() for two-way
interactions, and power_interaction_3way_r2() for three-way interactions. The function
run_pos_power_search() provides a stability analysis for two-way interactions.
Please cite as: Baranger DAA, Finsaas MC, Goldstein BL, Vize CE, Lynam DR,
Olino TM (2023). "Tutorial: Power analyses for interaction effects in
cross-sectional regressions." <doi:10.1177/25152459231187531>.
If you use the stability analyses, please cite: Castillo A, Miller JD, Vize C,
Ba [...truncated...]
Author: David Baranger [aut, cre],
Andrew Castillo [aut],
Brandon Goldstein [ctb],
Megan Finsaas [ctb],
Thomas Olino [ctb],
Colin Vize [ctb],
Don Lynam [ctb]
Maintainer: David Baranger <dbaranger@gmail.com>
Diff between InteractionPoweR versions 0.2.2 dated 2024-07-09 and 0.2.4 dated 2026-03-24
DESCRIPTION | 26 ++++++++----- MD5 | 16 ++++---- NAMESPACE | 1 NEWS.md | 10 +++++ R/power_interaction_3way_r2.R | 4 +- R/run_pos_power_search.R |only README.md | 76 +++++++++++++++++++++++++-------------- inst/CITATION | 15 ++++++- man/power_interaction_3way_r2.Rd | 4 +- man/run_pos_power_search.Rd |only 10 files changed, 103 insertions(+), 49 deletions(-)
More information about InteractionPoweR at CRAN
Permanent link
Title: Lightweight and Feature Complete Unit Testing Framework
Description: Provides a lightweight (zero-dependency) and easy to use
unit testing framework. Main features: install tests with
the package. Test results are treated as data that can be stored and
manipulated. Test files are R scripts interspersed with test commands, that
can be programmed over. Fully automated build-install-test sequence for
packages. Skip tests when not run locally (e.g. on CRAN). Flexible and
configurable output printing. Compare computed output with output stored
with the package. Run tests in parallel. Extensible by other packages.
Report side effects.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between tinytest versions 1.4.1 dated 2023-02-21 and 1.4.3 dated 2026-03-24
DESCRIPTION | 11 +++--- MD5 | 41 ++++++++++++----------- NEWS | 14 ++++++++ R/expectations.R | 26 +++++++-------- R/init.R | 8 +++- R/methods.R | 4 +- R/setup.R | 57 ++++++++++++++++----------------- R/tinytest.R | 5 +- build/vignette.rds |binary inst/CITATION | 8 ++-- inst/doc/tinytest_examples.Rnw | 2 - inst/doc/tinytest_examples.pdf |binary inst/doc/using_tinytest.pdf |binary inst/tinytest/runs/test_exit_if_not2.R |only inst/tinytest/test_file.R | 3 + inst/tinytest/test_init.R | 9 ++++- man/expect_length.Rd | 2 - man/expect_match.Rd | 2 - man/ignore.Rd | 2 - man/run_test_dir.Rd | 2 - man/tinytests.Rd | 4 +- vignettes/tinytest_examples.Rnw | 2 - 22 files changed, 118 insertions(+), 84 deletions(-)
Title: The R Interface to 'SyncroSim'
Description: 'SyncroSim' is a generalized framework for managing scenario-based
datasets (<https://syncrosim.com/>). 'rsyncrosim' provides an interface to
'SyncroSim'. Simulation models can be added to 'SyncroSim' in order to
transform these datasets, taking advantage of general features such as
defining scenarios of model inputs, running Monte Carlo simulations, and
summarizing model outputs. 'rsyncrosim' requires 'SyncroSim' 2.3.5 or higher
(API documentation: <https://docs.syncrosim.com/>).
Author: Colin Daniel [aut],
Josie Hughes [aut],
Valentin Lucet [aut],
Alex Embrey [aut],
Katie Birchard [aut],
Leonardo Frid [aut, cre],
Tabitha Kennedy [aut],
Shreeram Senthivasan [aut],
Vicki Zhang [aut],
Hannah Adams [aut],
ApexRMS [cph]
Maintainer: Leonardo Frid <rsyncrosim@syncrosim.com>
Diff between rsyncrosim versions 2.1.9 dated 2025-10-14 and 2.1.13 dated 2026-03-24
DESCRIPTION | 42 MD5 | 279 +++-- NAMESPACE | 1 NEWS.md | 36 R/AAAClassDefinitions.R | 18 R/addPackage.R | 4 R/addRow.R | 206 ++-- R/backup.R | 6 R/chart.R | 6 R/chartCriteria.R | 4 R/chartData.R | 6 R/chartDisagg.R | 6 R/chartErrorBar.R | 6 R/chartId.R | 4 R/chartInclude.R | 6 R/chartOptionsFont.R | 6 R/chartOptionsFormat.R | 6 R/chartOptionsLegend.R | 6 R/chartOptionsXAxis.R | 6 R/chartOptionsYAxis.R | 6 R/command.R | 2 R/compact.R | 4 R/condaFilepath.R | 2 R/createCondaEnv.R | 2 R/datasheet.R | 2067 +++++++++++++++++++++++++++---------------- R/datasheetSpatRaster.R | 826 ++++++++++------- R/dateModified.R | 8 R/delete.R | 14 R/deleteLibrary.R | 2 R/dependency.R | 6 R/description.R | 8 R/filepath.R | 18 R/folder.R | 6 R/folderId.R | 12 R/ignoreDependencies.R | 4 R/info.R | 2 R/installConda.R | 2 R/installPackage.R | 4 R/internalHelpers.R | 2122 ++++++++++++++++++++++----------------------- R/internalWrappers.R | 125 +- R/mergeDependencies.R | 4 R/name.R | 8 R/owner.R | 8 R/packages.R | 8 R/parentId.R | 2 R/print.R | 194 ++-- R/printCmd.R | 2 R/project.R | 14 R/projectId.R | 8 R/readOnly.R | 10 R/removePackage.R | 4 R/restore.R | 120 +- R/rsyncrosim-package.R |only R/rsyncrosim.R | 46 R/run.R | 6 R/runLog.R | 2 R/saveDatasheet.R | 16 R/scenario.R | 12 R/scenarioId.R | 4 R/session.R | 8 R/signin.R | 2 R/signout.R | 2 R/silent.R | 4 R/ssimLibrary.R | 12 R/uninstallPackage.R | 2 R/useConda.R | 6 R/version.R | 2 R/viewProfile.R | 2 README.md | 2 man/Chart-class.Rd | 2 man/Folder-class.Rd | 2 man/Project-class.Rd | 6 man/Scenario-class.Rd | 2 man/Session-class.Rd | 2 man/SsimLibrary-class.Rd | 2 man/addPackage.Rd | 4 man/addRow.Rd | 92 - man/backup.Rd | 6 man/chart.Rd | 6 man/chartCriteria.Rd | 4 man/chartData.Rd | 6 man/chartDisagg.Rd | 6 man/chartErrorBar.Rd | 6 man/chartId.Rd | 4 man/chartInclude.Rd | 6 man/chartOptionsFont.Rd | 6 man/chartOptionsFormat.Rd | 6 man/chartOptionsLegend.Rd | 6 man/chartOptionsXAxis.Rd | 6 man/chartOptionsYAxis.Rd | 6 man/command.Rd | 2 man/compact.Rd | 4 man/condaFilepath.Rd | 2 man/createCondaEnv.Rd | 2 man/datasheet.Rd | 53 - man/datasheetSpatRaster.Rd | 24 man/dateModified.Rd | 8 man/delete.Rd | 14 man/deleteLibrary.Rd | 150 +-- man/dependency.Rd | 6 man/description.Rd | 8 man/figures |only man/filepath.Rd | 10 man/folder.Rd | 6 man/folderId.Rd | 12 man/ignoreDependencies.Rd | 4 man/info.Rd | 2 man/installConda.Rd | 2 man/installPackage.Rd | 4 man/mergeDependencies.Rd | 4 man/name.Rd | 8 man/owner.Rd | 8 man/packages.Rd | 8 man/parentId.Rd | 2 man/printCmd.Rd | 2 man/progressBar.Rd | 114 +- man/project.Rd | 14 man/projectId.Rd | 8 man/readOnly.Rd | 10 man/removePackage.Rd | 4 man/rsyncrosim-package.Rd |only man/rsyncrosim.Rd | 95 +- man/run.Rd | 6 man/runLog.Rd | 2 man/runtimeTempFolder.Rd | 50 - man/saveDatasheet.Rd | 8 man/scenario.Rd | 12 man/scenarioId.Rd | 4 man/session.Rd | 8 man/signIn.Rd | 2 man/signOut.Rd | 2 man/silent.Rd | 4 man/ssimEnvironment.Rd | 52 - man/ssimLibrary.Rd | 12 man/tempfilepath.Rd | 8 man/uninstallPackage.Rd | 2 man/updateRunLog.Rd | 68 - man/useConda.Rd | 6 man/version.Rd | 2 man/viewProfile.Rd | 2 140 files changed, 4076 insertions(+), 3356 deletions(-)
Title: Versatile R Server
Description: Rserve is a versatile, scalable server enabling the
efficient use of R from other applications through
variety of protocols including QAP, WebSockets, HTTP
and HTTPS. It acts as a server (TCP/IP or local sockets)
which allows binary requests to be sent to R. Every
connection has a separate workspace and working
directory. Client-side implementations are available
for many popular languages allowing applications
to use facilities of R without the need of linking to
the R binary. Rserve supports remote connections,
user authentication and file transfer. A simple R client
is included in this package as well. It also supports
OCAP mode for secure remote procedure calls,
including support for full event loop, asynchronous
results/graphics and console I/O.
Author: Simon Urbanek [aut, cre, cph]
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between Rserve versions 1.8-18 dated 2026-03-20 and 1.8-19 dated 2026-03-24
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS | 4 ++++ inst/java/REngine.jar |binary inst/java/Rserve.jar |binary src/Rserv.c | 1 - src/Rsrv.h | 2 +- src/client/cxx/Rsrv.h | 2 +- src/client/java/Rserve/Rserve.jar |binary src/oc.c | 2 ++ src/rcompat.h | 6 ++++-- 11 files changed, 25 insertions(+), 18 deletions(-)
Title: 'rcpp' Wrapper for 'mecab' Library
Description: R package based on 'Rcpp' for 'MeCab': Yet Another Part-of-Speech and Morphological Analyzer.
The purpose of this package is providing a seamless developing and analyzing environment for CJK texts.
This package utilizes parallel programming for providing highly efficient text preprocessing 'posParallel()' function.
For installation, please refer to README.md file.
Author: Junhewk Kim [aut, cre],
Taku Kudo [aut],
Akiru Kato [ctb],
Patrick Schratz [ctb]
Maintainer: Junhewk Kim <junhewk.kim@gmail.com>
Diff between RcppMeCab versions 0.0.1.2 dated 2018-07-04 and 0.0.1.5 dated 2026-03-24
RcppMeCab-0.0.1.2/RcppMeCab/src/Makevars |only RcppMeCab-0.0.1.2/RcppMeCab/src/mecab.h |only RcppMeCab-0.0.1.2/RcppMeCab/src/posLoopRcpp.cpp |only RcppMeCab-0.0.1.5/RcppMeCab/DESCRIPTION | 33 RcppMeCab-0.0.1.5/RcppMeCab/MD5 | 57 + RcppMeCab-0.0.1.5/RcppMeCab/NAMESPACE | 7 RcppMeCab-0.0.1.5/RcppMeCab/NEWS.md | 4 RcppMeCab-0.0.1.5/RcppMeCab/R/RcppExports.R | 38 - RcppMeCab-0.0.1.5/RcppMeCab/R/RcppMeCab-package.r | 10 RcppMeCab-0.0.1.5/RcppMeCab/R/dic.R |only RcppMeCab-0.0.1.5/RcppMeCab/R/dict.R |only RcppMeCab-0.0.1.5/RcppMeCab/R/pos.r | 26 RcppMeCab-0.0.1.5/RcppMeCab/R/posParallel.R | 28 RcppMeCab-0.0.1.5/RcppMeCab/R/zzz.R |only RcppMeCab-0.0.1.5/RcppMeCab/README.md | 174 +++-- RcppMeCab-0.0.1.5/RcppMeCab/cleanup |only RcppMeCab-0.0.1.5/RcppMeCab/configure |only RcppMeCab-0.0.1.5/RcppMeCab/inst/WORDLIST |only RcppMeCab-0.0.1.5/RcppMeCab/inst/include/RcppMeCab.h |only RcppMeCab-0.0.1.5/RcppMeCab/inst/include/RcppMeCab_RcppExports.h |only RcppMeCab-0.0.1.5/RcppMeCab/inst/include/mecab.h | 2 RcppMeCab-0.0.1.5/RcppMeCab/man/RcppMeCab.Rd | 11 RcppMeCab-0.0.1.5/RcppMeCab/man/dict_index.Rd |only RcppMeCab-0.0.1.5/RcppMeCab/man/download_dic.Rd |only RcppMeCab-0.0.1.5/RcppMeCab/man/list_dic.Rd |only RcppMeCab-0.0.1.5/RcppMeCab/man/pos.Rd | 29 RcppMeCab-0.0.1.5/RcppMeCab/man/posParallel.Rd | 29 RcppMeCab-0.0.1.5/RcppMeCab/man/set_dic.Rd |only RcppMeCab-0.0.1.5/RcppMeCab/src/Makevars.in |only RcppMeCab-0.0.1.5/RcppMeCab/src/Makevars.win | 68 - RcppMeCab-0.0.1.5/RcppMeCab/src/RcppExports.cpp | 341 ++++++++-- RcppMeCab-0.0.1.5/RcppMeCab/src/dictRcpp.cpp |only RcppMeCab-0.0.1.5/RcppMeCab/src/posParallelRcpp.cpp | 243 ++----- RcppMeCab-0.0.1.5/RcppMeCab/src/posRcpp.cpp | 130 +-- RcppMeCab-0.0.1.5/RcppMeCab/src/posloopRcpp.cpp |only RcppMeCab-0.0.1.5/RcppMeCab/tests |only RcppMeCab-0.0.1.5/RcppMeCab/tools |only 37 files changed, 755 insertions(+), 475 deletions(-)
Title: Power Analysis for Moderation and Mediation
Description: Power analysis and sample size determination
for moderation, mediation, and moderated mediation in models
fitted by structural equation modelling using the 'lavaan'
package by Rosseel (2012) <doi:10.18637/jss.v048.i02> or
by multiple regression. The package 'manymome' by
Cheung and Cheung (2024) <doi:10.3758/s13428-023-02224-z>
is used to specify the indirect paths or conditional
indirect paths to be tested.
Author: Shu Fai Cheung [aut, cre] ,
Sing-Hang Cheung [aut] ,
Wendie Yang [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between power4mome versions 0.2.0 dated 2026-03-17 and 0.2.1 dated 2026-03-24
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NEWS.md | 6 +++++- README.md | 2 +- tests/testthat/test-test_indirect.R | 4 +++- tests/testthat/test-test_indirects.R | 8 +++++--- tests/testthat/test-test_indirects_lm.R |only 7 files changed, 23 insertions(+), 14 deletions(-)
Title: Cross-Platform File System Operations Based on 'libuv'
Description: A cross-platform interface to file system operations, built
on top of the 'libuv' C library.
Author: Jim Hester [aut],
Hadley Wickham [aut],
Gabor Csardi [aut],
Jeroen Ooms [cre],
libuv project contributors [cph] ,
Joyent, Inc. and other Node contributors [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between fs versions 2.0.0 dated 2026-03-22 and 2.0.1 dated 2026-03-24
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ cleanup | 2 +- configure | 11 ++++++++--- inst/doc/function-comparisons.Rmd | 2 +- inst/doc/function-comparisons.html | 2 +- vignettes/function-comparisons.Rmd | 2 +- 8 files changed, 28 insertions(+), 17 deletions(-)
Title: Pediatric Blood Pressure
Description: Data and utilities for estimating pediatric blood pressure
percentiles by sex, age, and optionally height (stature) as described in
Martin et al. (2022) <doi:10.1001/jamanetworkopen.2022.36918>.
Blood pressure percentiles for children under one year of age come from Gemelli
et al. (1990) <doi:10.1007/BF02171556>. Estimates of blood pressure
percentiles for children at least one year of age are informed by
data from the National Heart, Lung, and Blood Institute (NHLBI) and the
Centers for Disease Control and Prevention (CDC)
<doi:10.1542/peds.2009-2107C> or from Lo et al. (2013)
<doi:10.1542/peds.2012-1292>. The source-selection flowchart comes from Martin et al. (2022)
<doi:10.1542/hpeds.2021-005998>.
Author: Peter DeWitt [aut, cre] ,
Blake Martin [ctb] ,
David Albers [ctb] ,
Tell Bennett [ctb]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>
Diff between pedbp versions 2.0.3 dated 2025-06-12 and 2.1.0 dated 2026-03-23
pedbp-2.0.3/pedbp/build/partial.rdb |only pedbp-2.1.0/pedbp/DESCRIPTION | 17 - pedbp-2.1.0/pedbp/MD5 | 98 +++--- pedbp-2.1.0/pedbp/NEWS.md | 17 + pedbp-2.1.0/pedbp/R/RcppExports.R | 3 pedbp-2.1.0/pedbp/R/bp_cdf_plot.R | 9 pedbp-2.1.0/pedbp/R/bp_charts.R | 2 pedbp-2.1.0/pedbp/R/bp_distribution.R | 68 +++- pedbp-2.1.0/pedbp/R/datasets.R | 5 pedbp-2.1.0/pedbp/R/growth-standards.R | 7 pedbp-2.1.0/pedbp/R/pedbp-package.R | 12 pedbp-2.1.0/pedbp/R/sysdata.rda |binary pedbp-2.1.0/pedbp/R/weight_for_stature.R | 2 pedbp-2.1.0/pedbp/README.md | 13 pedbp-2.1.0/pedbp/build/vignette.rds |binary pedbp-2.1.0/pedbp/data/bp_parameters.rda |binary pedbp-2.1.0/pedbp/data/flynn2017.rda |binary pedbp-2.1.0/pedbp/data/gemelli1990.rda |binary pedbp-2.1.0/pedbp/data/lo2013.rda |binary pedbp-2.1.0/pedbp/data/nhlbi_bp_norms.rda |binary pedbp-2.1.0/pedbp/inst/doc/bp-distributions.R | 11 pedbp-2.1.0/pedbp/inst/doc/bp-distributions.Rmd | 16 - pedbp-2.1.0/pedbp/inst/doc/bp-distributions.html | 88 +++-- pedbp-2.1.0/pedbp/inst/doc/growth-standards.R | 7 pedbp-2.1.0/pedbp/inst/doc/growth-standards.Rmd | 13 pedbp-2.1.0/pedbp/inst/doc/growth-standards.html | 7 pedbp-2.1.0/pedbp/inst/shinyapps/pedbp/server.R | 151 ++++++---- pedbp-2.1.0/pedbp/inst/shinyapps/pedbp/ui.R | 9 pedbp-2.1.0/pedbp/man/bmi_for_age.Rd | 9 pedbp-2.1.0/pedbp/man/bp_cdf.Rd | 4 pedbp-2.1.0/pedbp/man/bp_chart.Rd | 2 pedbp-2.1.0/pedbp/man/bp_distribution.Rd | 42 +- pedbp-2.1.0/pedbp/man/bpdata.Rd | 4 pedbp-2.1.0/pedbp/man/cppBP.Rd | 3 pedbp-2.1.0/pedbp/man/growth-standards.Rd | 9 pedbp-2.1.0/pedbp/man/gs_chart.Rd | 7 pedbp-2.1.0/pedbp/man/head_circumference_for_age.Rd | 9 pedbp-2.1.0/pedbp/man/pedbp-package.Rd | 13 pedbp-2.1.0/pedbp/man/stature_for_age.Rd | 9 pedbp-2.1.0/pedbp/man/weight_for_age.Rd | 9 pedbp-2.1.0/pedbp/man/weight_for_stature.Rd | 11 pedbp-2.1.0/pedbp/src/blood_pressure.cpp | 33 +- pedbp-2.1.0/pedbp/src/growth_standards.cpp | 26 - pedbp-2.1.0/pedbp/src/utilities.cpp | 2 pedbp-2.1.0/pedbp/tests/test-bp-by-source.R | 48 --- pedbp-2.1.0/pedbp/tests/test-bp-percentile-consistency-regressions.R |only pedbp-2.1.0/pedbp/tests/test-bp_cdf.R | 2 pedbp-2.1.0/pedbp/tests/test-bp_distributions.R | 30 - pedbp-2.1.0/pedbp/tests/test-cppBP.R | 4 pedbp-2.1.0/pedbp/vignettes/bp-distributions.Rmd | 16 - pedbp-2.1.0/pedbp/vignettes/growth-standards.Rmd | 13 51 files changed, 491 insertions(+), 369 deletions(-)
Title: National Institutes of Health Brain Development Cohorts Data Hub
Tools
Description: A suite of functions to work with data from the National Institutes
of Health Brain Development Cohorts Data Hub. The package provides tools to
create, clean, process, and filter datasets and associated metadata. These
utilities are intended to simplify reproducible data-preparation for
future research.
Author: Le Zhang [aut, cre] ,
Janosch Linkersdoerfer [aut]
Maintainer: Le Zhang <dairc.service@gmail.com>
Diff between NBDCtools versions 1.0.2 dated 2025-10-05 and 1.1.0 dated 2026-03-23
NBDCtools-1.0.2/NBDCtools/man/create_bids_sidecar.Rd |only NBDCtools-1.1.0/NBDCtools/DESCRIPTION | 10 NBDCtools-1.1.0/NBDCtools/MD5 | 46 - NBDCtools-1.1.0/NBDCtools/NAMESPACE | 12 NBDCtools-1.1.0/NBDCtools/NEWS.md | 26 NBDCtools-1.1.0/NBDCtools/R/NBDCtools-package.R | 1 NBDCtools-1.1.0/NBDCtools/R/dataset.R | 12 NBDCtools-1.1.0/NBDCtools/R/globals.R | 3 NBDCtools-1.1.0/NBDCtools/R/join.R | 122 ++ NBDCtools-1.1.0/NBDCtools/R/metadata.R | 199 +++- NBDCtools-1.1.0/NBDCtools/R/shadow.R | 8 NBDCtools-1.1.0/NBDCtools/R/transform.R | 22 NBDCtools-1.1.0/NBDCtools/R/utils.R | 270 +++++- NBDCtools-1.1.0/NBDCtools/README.md | 23 NBDCtools-1.1.0/NBDCtools/build/vignette.rds |binary NBDCtools-1.1.0/NBDCtools/inst/doc/NBDCtools.R | 2 NBDCtools-1.1.0/NBDCtools/inst/doc/NBDCtools.Rmd | 2 NBDCtools-1.1.0/NBDCtools/inst/doc/NBDCtools.html | 443 ++++++---- NBDCtools-1.1.0/NBDCtools/inst/extdata/meta_internal/lst_session_latest.rds |only NBDCtools-1.1.0/NBDCtools/man/NBDCtools-package.Rd | 4 NBDCtools-1.1.0/NBDCtools/man/add_custom_metadata.Rd |only NBDCtools-1.1.0/NBDCtools/man/create_bids_sidecar_data.Rd |only NBDCtools-1.1.0/NBDCtools/man/create_bids_sidecar_metadata.Rd |only NBDCtools-1.1.0/NBDCtools/man/create_dataset.Rd | 14 NBDCtools-1.1.0/NBDCtools/man/get_releases.Rd |only NBDCtools-1.1.0/NBDCtools/man/join_tabulated.Rd | 16 NBDCtools-1.1.0/NBDCtools/vignettes/NBDCtools.Rmd | 2 27 files changed, 983 insertions(+), 254 deletions(-)
Title: Multi-Visit Closed Population Mark-Recapture Estimates
Description: Compute bootstrap confidence intervals for the adjusted Schnabel and Schumacher-Eschmeyer multi-visit mark-recapture estimators based on Dettloff (2023) <doi:10.1016/j.fishres.2023.106756>.
Author: Kyle Dettloff [aut, cre, cph]
Maintainer: Kyle Dettloff <kyle.dettloff@noaa.gov>
Diff between mRc versions 0.1.0 dated 2023-08-28 and 0.1.1 dated 2026-03-23
DESCRIPTION | 9 ++- MD5 | 10 ++-- NAMESPACE | 4 + NEWS.md |only R/mrc_boot_CI.R | 137 ++++++++++++++++++++++++++++++++++++++------------------ build |only man/closedCI.Rd | 24 +++++---- 7 files changed, 123 insertions(+), 61 deletions(-)
Title: Light Daily Alcohol and Longevity
Description: Contains data from an observational study concerning possible effects of light daily alcohol consumption on survival and on HDL cholesterol. It also replicates various simple analyses in Rosenbaum (2025) <doi:10.1080/09332480.2025.2473291>. Finally, it includes new R code in wgtRankCef() that implements and replicates a new method for constructing evidence factors in observational block designs in Rosenbaum (2026) <doi:10.1080/01621459.2026.2624858>).
Author: Paul Rosenbaum [aut, cre]
Maintainer: Paul Rosenbaum <rosenbaum@wharton.upenn.edu>
Diff between alcoholSurv versions 0.7.0 dated 2025-05-27 and 0.7.2 dated 2026-03-23
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/wgtRankCef.R | 2 -- build/partial.rdb |binary man/alcoholSurv-package.Rd | 5 ++--- man/alcoholSurv.Rd | 4 +++- man/wgtRankCef.Rd | 17 ++++++++++------- 7 files changed, 25 insertions(+), 23 deletions(-)
Title: Multivariate Spatio-Temporal Models using Structural Equations
Description: Fits a wide variety of multivariate spatio-temporal models
with simultaneous and lagged interactions among variables (including
vector autoregressive spatio-temporal ('VAST') dynamics)
for areal, continuous, or network spatial domains.
It includes time-variable, space-variable, and space-time-variable
interactions using dynamic structural equation models ('DSEM')
as expressive interface, and the 'mgcv' package to specify splines
via the formula interface. See Thorson et al. (2025)
<doi:10.1111/geb.70035> for more details.
Author: James T. Thorson [aut, cre] ,
Sean C. Anderson [aut]
Maintainer: James T. Thorson <James.Thorson@noaa.gov>
Diff between tinyVAST versions 1.4.0 dated 2025-12-20 and 1.5.0 dated 2026-03-23
DESCRIPTION | 11 MD5 | 48 - NAMESPACE | 11 NEWS.md | 8 R/fit.R | 75 +- R/internal.R | 56 + R/methods.R | 8 R/predict.R | 10 R/project.R | 13 R/sanity.R |only R/utility.R | 30 build/partial.rdb |binary build/vignette.rds |binary inst/doc/dsem.html | 109 +-- inst/doc/mgcv.html | 2 inst/doc/multiple_data.html | 2 inst/doc/spatial.html | 14 inst/doc/spatial_factor_analysis.html | 77 +- man/atlantic_yellowtail.Rd | 30 man/predict.tinyVAST.Rd | 10 man/project.Rd | 10 man/sanity.Rd |only man/tinyVAST.Rd | 5 tests/testthat/test-deviance-residuals.R | 7 tests/testthat/test-smooths.R | 36 - vignettes/tinyVAST_vignettes.bib | 1062 +++++++++++++++---------------- 26 files changed, 914 insertions(+), 720 deletions(-)
Title: Download Data from Bank of Spain
Description: Tools to download data series from 'Banco de España' ('BdE')
on 'tibble' format. 'Banco de España' is the national central bank
and, within the framework of the Single Supervisory Mechanism ('SSM'),
the supervisor of the Spanish banking system along with the European
Central Bank. This package is in no way sponsored endorsed or
administered by 'Banco de España'.
Author: Diego H. Herrero [aut, cre, cph]
Maintainer: Diego H. Herrero <dev.dieghernan@gmail.com>
Diff between tidyBdE versions 0.5.0 dated 2026-01-13 and 0.6.0 dated 2026-03-23
tidyBdE-0.5.0/tidyBdE/inst/doc/tidyBdE.Rmd |only tidyBdE-0.5.0/tidyBdE/vignettes/tidyBdE.Rmd |only tidyBdE-0.6.0/tidyBdE/DESCRIPTION | 10 tidyBdE-0.6.0/tidyBdE/MD5 | 74 tidyBdE-0.6.0/tidyBdE/NEWS.md | 5 tidyBdE-0.6.0/tidyBdE/R/bde_check_access.R | 122 - tidyBdE-0.6.0/tidyBdE/R/bde_tidy_palettes.R | 1 tidyBdE-0.6.0/tidyBdE/R/catalogs.R | 796 ++++---- tidyBdE-0.6.0/tidyBdE/R/data.R | 76 tidyBdE-0.6.0/tidyBdE/R/indicators.R | 378 ++-- tidyBdE-0.6.0/tidyBdE/R/scales.R | 1 tidyBdE-0.6.0/tidyBdE/R/series.R | 923 ++++------ tidyBdE-0.6.0/tidyBdE/R/superseded.R | 108 - tidyBdE-0.6.0/tidyBdE/R/tidyBdE-package.R | 18 tidyBdE-0.6.0/tidyBdE/R/utils.R | 597 +++--- tidyBdE-0.6.0/tidyBdE/README.md | 77 tidyBdE-0.6.0/tidyBdE/build/vignette.rds |binary tidyBdE-0.6.0/tidyBdE/data/bde_ind_db.rda |binary tidyBdE-0.6.0/tidyBdE/inst/CITATION | 2 tidyBdE-0.6.0/tidyBdE/inst/COPYRIGHTS | 8 tidyBdE-0.6.0/tidyBdE/inst/doc/tidyBdE.html | 420 +--- tidyBdE-0.6.0/tidyBdE/inst/doc/tidyBdE.qmd |only tidyBdE-0.6.0/tidyBdE/inst/schemaorg.json | 4 tidyBdE-0.6.0/tidyBdE/man/bde_catalog_load.Rd | 14 tidyBdE-0.6.0/tidyBdE/man/bde_catalog_search.Rd | 10 tidyBdE-0.6.0/tidyBdE/man/bde_catalog_update.Rd | 6 tidyBdE-0.6.0/tidyBdE/man/bde_check_access.Rd | 2 tidyBdE-0.6.0/tidyBdE/man/bde_ind_db.Rd | 18 tidyBdE-0.6.0/tidyBdE/man/bde_indicators.Rd | 6 tidyBdE-0.6.0/tidyBdE/man/bde_parse_dates.Rd | 7 tidyBdE-0.6.0/tidyBdE/man/bde_series_full_load.Rd | 12 tidyBdE-0.6.0/tidyBdE/man/bde_series_load.Rd | 15 tidyBdE-0.6.0/tidyBdE/man/chunks/bde_ind_db_meta.Rmd | 3 tidyBdE-0.6.0/tidyBdE/man/scales_bde.Rd | 1 tidyBdE-0.6.0/tidyBdE/tests/testthat.R | 24 tidyBdE-0.6.0/tidyBdE/tests/testthat/_snaps/bde_tidy_palettes.md | 30 tidyBdE-0.6.0/tidyBdE/tests/testthat/_snaps/superseded.md | 36 tidyBdE-0.6.0/tidyBdE/tests/testthat/test-bde_tidy_palettes.R | 1 tidyBdE-0.6.0/tidyBdE/tests/testthat/test-scales.R | 1 tidyBdE-0.6.0/tidyBdE/vignettes/tidyBdE.qmd |only 40 files changed, 1839 insertions(+), 1967 deletions(-)
Title: Cross-Sectional Dependence Models
Description: Provides estimators and utilities for large panel-data models with cross-sectional dependence, including mean group (MG), common correlated effects (CCE) and dynamic CCE (DCCE) estimators, and cross-sectionally augmented ARDL (CS-ARDL) specifications, plus related inference and diagnostics.
Author: Joao Claudio Macosso [aut, cre]
Maintainer: Joao Claudio Macosso <joaoclaudiomacosso@gmail.com>
Diff between csdm versions 1.0.0 dated 2026-02-20 and 1.0.1 dated 2026-03-23
DESCRIPTION | 17 - MD5 | 36 +- NAMESPACE | 1 NEWS.md | 39 +- R/csdm.R | 166 ++++++++---- R/data.R | 6 R/utils_cd.R | 16 - R/zzz_imports.R | 1 README.md | 183 ++++++++++--- build/partial.rdb |only inst/REFERENCES.bib |only inst/WORDLIST | 4 inst/apa.csl |only inst/doc/introduction_to_csdm.R | 3 inst/doc/introduction_to_csdm.Rmd | 210 ++++++++++++--- inst/doc/introduction_to_csdm.html | 509 +++++++++++++++++++++++++++---------- man/PWT_60_07.Rd | 6 man/cd_test.Rd | 16 - man/csdm.Rd | 164 ++++++++--- man/figures |only vignettes/introduction_to_csdm.Rmd | 210 ++++++++++++--- 21 files changed, 1157 insertions(+), 430 deletions(-)
Title: Convert from One Colour Space to Another, Print a Ready-to-Paste
Modern 'CSS' Syntax
Description: Provides a comprehensive 'API' for colour conversion between popular
colour spaces ('RGB', 'HSL', 'OKLab', 'OKLch', 'hex', and named colours) along with
clean, modern 'CSS' Color Level 4 syntax output. Integrates seamlessly into
'Shiny' and 'Quarto' workflows. Includes nearest colour name lookup powered by
a curated database of over 30,000 colour names.
'OKLab'/'OKLCh' colour spaces are described in Ottosson (2020)
<https://bottosson.github.io/posts/oklab/>. 'CSS' Color Level 4 syntax follows
the W3C specification <https://www.w3.org/TR/css-color-4/>.
Author: Yann Cohen [aut, cre]
Maintainer: Yann Cohen <yannco5@gmail.com>
Diff between colourspace versions 0.0.1 dated 2026-03-04 and 0.1.1 dated 2026-03-23
DESCRIPTION | 19 MD5 | 37 - NEWS.md |only R/convert.R | 29 - R/css.R | 436 +++++++-------- R/fallback.R | 173 +++-- R/from_css.R | 408 +++++++------- R/wrappers.R | 25 README.md | 24 inst |only man/convert_colourspace.Rd | 103 +-- man/from_css.Rd | 140 ++-- man/hex_to_name.Rd | 64 +- man/to_css.Rd | 109 +-- tests/testthat/test-css-accuracy.R |only tests/testthat/test-css-internals.R | 110 ++- tests/testthat/test-fallback-no-match.R | 105 +-- tests/testthat/test-fallback.R | 72 +- tests/testthat/test-from_css.R | 924 ++++++++++++++++---------------- tests/testthat/test-hex_to_name.R | 24 tests/testthat/test-to_css.R | 112 +-- 21 files changed, 1476 insertions(+), 1438 deletions(-)
Title: Climate AEMET Tools
Description: Tools to download the climatic data of the Spanish
Meteorological Agency (AEMET) directly from R using their API and
create scientific graphs (climate charts, trend analysis of climate
time series, temperature and precipitation anomalies maps, warming
stripes graphics, climatograms, etc.).
Author: Manuel Pizarro [aut, cph] ,
Diego Hernangomez [aut, cre] ,
Gema Fernandez-Aviles [aut] ,
AEMET [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between climaemet versions 1.5.0 dated 2026-01-11 and 1.5.1 dated 2026-03-23
climaemet-1.5.0/climaemet/inst/doc/climaemet.Rmd |only climaemet-1.5.0/climaemet/inst/doc/extending-climaemet.Rmd |only climaemet-1.5.0/climaemet/vignettes/climaemet.Rmd |only climaemet-1.5.0/climaemet/vignettes/extending-climaemet.Rmd |only climaemet-1.5.1/climaemet/DESCRIPTION | 15 climaemet-1.5.1/climaemet/MD5 | 184 - climaemet-1.5.1/climaemet/NEWS.md | 22 climaemet-1.5.1/climaemet/R/aemet-alert-zones.R | 228 - climaemet-1.5.1/climaemet/R/aemet-alerts.R | 17 climaemet-1.5.1/climaemet/R/aemet-api-key.R | 389 +- climaemet-1.5.1/climaemet/R/aemet-api-query.R | 8 climaemet-1.5.1/climaemet/R/aemet-beaches.R | 217 - climaemet-1.5.1/climaemet/R/aemet-daily.R | 16 climaemet-1.5.1/climaemet/R/aemet-extremes.R | 8 climaemet-1.5.1/climaemet/R/aemet-forecast-beach.R | 7 climaemet-1.5.1/climaemet/R/aemet-forecast-daily.R | 5 climaemet-1.5.1/climaemet/R/aemet-forecast-fires.R | 2 climaemet-1.5.1/climaemet/R/aemet-forecast-hourly.R | 18 climaemet-1.5.1/climaemet/R/aemet-forecast-utils.R | 33 climaemet-1.5.1/climaemet/R/aemet-last-obs.R | 6 climaemet-1.5.1/climaemet/R/aemet-monthly.R | 844 ++--- climaemet-1.5.1/climaemet/R/aemet-normal.R | 361 +- climaemet-1.5.1/climaemet/R/aemet-stations.R | 4 climaemet-1.5.1/climaemet/R/climaemet-news.R | 46 climaemet-1.5.1/climaemet/R/climatogram.R | 1596 ++++------ climaemet-1.5.1/climaemet/R/data.R | 11 climaemet-1.5.1/climaemet/R/helpers-api.R | 4 climaemet-1.5.1/climaemet/R/helpers.R | 225 - climaemet-1.5.1/climaemet/R/stripes.R | 914 ++--- climaemet-1.5.1/climaemet/R/utils.R | 151 climaemet-1.5.1/climaemet/R/windrose.R | 16 climaemet-1.5.1/climaemet/README.md | 125 climaemet-1.5.1/climaemet/build/vignette.rds |binary climaemet-1.5.1/climaemet/data/aemet_munic.rda |binary climaemet-1.5.1/climaemet/data/climaemet_9434_climatogram.rda |binary climaemet-1.5.1/climaemet/data/climaemet_9434_temp.rda |binary climaemet-1.5.1/climaemet/data/climaemet_9434_wind.rda |binary climaemet-1.5.1/climaemet/inst/CITATION | 42 climaemet-1.5.1/climaemet/inst/COPYRIGHTS | 19 climaemet-1.5.1/climaemet/inst/REFERENCES.bib | 5 climaemet-1.5.1/climaemet/inst/doc/climaemet.html | 399 -- climaemet-1.5.1/climaemet/inst/doc/climaemet.qmd |only climaemet-1.5.1/climaemet/inst/doc/extending-climaemet.html | 404 -- climaemet-1.5.1/climaemet/inst/doc/extending-climaemet.qmd |only climaemet-1.5.1/climaemet/inst/schemaorg.json | 4 climaemet-1.5.1/climaemet/man/aemet_alert_zones.Rd | 14 climaemet-1.5.1/climaemet/man/aemet_alerts.Rd | 14 climaemet-1.5.1/climaemet/man/aemet_api_key.Rd | 28 climaemet-1.5.1/climaemet/man/aemet_beaches.Rd | 8 climaemet-1.5.1/climaemet/man/aemet_daily.Rd | 10 climaemet-1.5.1/climaemet/man/aemet_detect_api_key.Rd | 14 climaemet-1.5.1/climaemet/man/aemet_extremes_clim.Rd | 8 climaemet-1.5.1/climaemet/man/aemet_forecast.Rd | 13 climaemet-1.5.1/climaemet/man/aemet_forecast_beaches.Rd | 6 climaemet-1.5.1/climaemet/man/aemet_forecast_fires.Rd | 4 climaemet-1.5.1/climaemet/man/aemet_forecast_utils.Rd | 5 climaemet-1.5.1/climaemet/man/aemet_last_obs.Rd | 6 climaemet-1.5.1/climaemet/man/aemet_monthly.Rd | 6 climaemet-1.5.1/climaemet/man/aemet_munic.Rd | 4 climaemet-1.5.1/climaemet/man/aemet_normal.Rd | 6 climaemet-1.5.1/climaemet/man/aemet_stations.Rd | 6 climaemet-1.5.1/climaemet/man/climaemet_9434_temp.Rd | 2 climaemet-1.5.1/climaemet/man/climaemet_9434_wind.Rd | 2 climaemet-1.5.1/climaemet/man/figures/README-spatial-1.png |binary climaemet-1.5.1/climaemet/man/get_data_aemet.Rd | 5 climaemet-1.5.1/climaemet/man/ggclimat_walter_lieth.Rd | 2 climaemet-1.5.1/climaemet/man/ggwindrose.Rd | 8 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-extremes.md | 2 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-forecast-fires.md | 16 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-forecast-hourly.md | 68 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-last-obs.md | 48 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-monthly.md | 176 - climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-normal.md | 48 climaemet-1.5.1/climaemet/tests/testthat/_snaps/aemet-stations.md | 32 climaemet-1.5.1/climaemet/tests/testthat/_snaps/climatogram.md | 54 climaemet-1.5.1/climaemet/tests/testthat/_snaps/helpers.md | 196 - climaemet-1.5.1/climaemet/tests/testthat/_snaps/stripes.md | 64 climaemet-1.5.1/climaemet/tests/testthat/_snaps/utils.md | 44 climaemet-1.5.1/climaemet/tests/testthat/_snaps/windrose.md | 222 - climaemet-1.5.1/climaemet/tests/testthat/test-aemet-alert-zones.R | 1 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-alerts.R | 170 - climaemet-1.5.1/climaemet/tests/testthat/test-aemet-api-key.R | 3 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-api-query.R | 223 - climaemet-1.5.1/climaemet/tests/testthat/test-aemet-beaches.R | 1 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-extremes.R | 105 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-forecast-daily.R | 88 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-forecast-fires.R | 1 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-forecast-hourly.R | 2 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-monthly.R | 1 climaemet-1.5.1/climaemet/tests/testthat/test-aemet-stations.R | 73 climaemet-1.5.1/climaemet/tests/testthat/test-climatogram.R | 162 - climaemet-1.5.1/climaemet/tests/testthat/test-helpers.R | 1 climaemet-1.5.1/climaemet/tests/testthat/test-windrose.R | 238 - climaemet-1.5.1/climaemet/vignettes/climaemet.qmd |only climaemet-1.5.1/climaemet/vignettes/example-gif.gif |binary climaemet-1.5.1/climaemet/vignettes/extending-climaemet.qmd |only climaemet-1.5.1/climaemet/vignettes/spatial-1.png |binary 97 files changed, 4068 insertions(+), 4487 deletions(-)
Title: A Shiny Dashboard Template Modular System with Chat Bot Support
Description: A template dashboard system with AI agent integrated.
Comes with default themes that can be customized.
Developers can upload modified templates on 'Github', and users can
easily download templates with 'RStudio' project wizard.
The key features of the default template include light and dark theme
switcher, resizing graphs, synchronizing inputs across sessions,
new notification system, fancy progress bars, and card-like flip
panels with back sides, as well as various of 'HTML' tool widgets.
Author: Zhengjia Wang [cph, aut, cre] ,
ColorlibHQ [cph] ,
Bootstrap contributors [ctb] ,
Twitter, Inc [cph] ,
Ivan Sagalaev [ctb, cph] ,
Rene Haas [ctb, cph] ,
Zeno Rocha [ctb, cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between shidashi versions 0.1.6 dated 2024-02-16 and 0.1.8 dated 2026-03-23
DESCRIPTION | 30 - MD5 | 150 ++++++-- NAMESPACE | 17 NEWS.md | 42 ++ R/aaa.R | 27 + R/barebone.R | 467 ++++++++++++++++++++++--- R/card-tabset.R | 42 +- R/card-tool.R | 1 R/chat-helpers.R |only R/chatbot.R |only R/drawer.R |only R/ellmer-helpers.R |only R/globals.R |only R/info-box.R | 3 R/mcp-handler.R |only R/mcp-wrapper.R |only R/menu-item.R | 9 R/modules.R | 226 ++++++++++-- R/progress.R | 2 R/render.R | 57 ++- R/rstudio.R | 53 +- R/settings.R | 9 R/shared-session.R | 21 - R/skill-parse.R |only R/skill-runner.R |only R/skill-wrapper.R |only R/ui-adminlte.R | 4 R/widgets.R | 84 +++- R/zzz.R | 1 inst/builtin-templates/AdminLTE3-bare/R |only inst/builtin-templates/AdminLTE3-bare/server.R |only inst/builtin-templates/AdminLTE3-bare/ui.R |only inst/builtin-templates/bslib-bare |only inst/global.R |only inst/mcp-proxy |only inst/rstudio/templates/project/shidashi.dcf | 2 man/back_top_button.Rd | 25 + man/bslib_dependency.Rd |only man/chatbot_server.Rd |only man/chatbot_ui.Rd |only man/drawer.Rd |only man/init_app.Rd |only man/init_chat.Rd |only man/mcp_wrapper.Rd |only man/module_drawer.Rd |only man/module_info.Rd | 47 ++ man/open_url.Rd |only man/progressOutput.Rd | 2 man/register_io.Rd |only man/skill_wrapper.Rd |only man/use_template.Rd | 7 tests |only 52 files changed, 1111 insertions(+), 217 deletions(-)
Title: Econometric Production Analysis with Ray-Based Distance
Functions
Description: Econometric analysis of multiple-input-multiple-output
production technologies with ray-based input distance functions as suggested
by Price and Henningsen (2023): "A Ray-Based Input Distance Function to Model
Zero-Valued Output Quantities: Derivation and an Empirical Application",
Journal of Productivity Analysis 60, p. 179-188,
<doi:10.1007/s11123-023-00684-1>.
Author: Arne Henningsen [aut, cre],
Juan Jose Price [aut]
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>
Diff between micEconDistRay versions 0.1-2 dated 2023-05-12 and 0.1-4 dated 2026-03-23
DESCRIPTION | 13 ++++--- MD5 | 14 ++++---- R/zzz.R | 8 ++-- inst/CITATION | 20 ++++++----- inst/NEWS.Rd | 7 ++++ tests/MuseumsDk_test.R | 4 +- tests/MuseumsDk_test.Rout.save | 62 ++++++++++++++++++------------------- tests/appleProdFr86_test.Rout.save | 10 ++--- 8 files changed, 74 insertions(+), 64 deletions(-)
More information about micEconDistRay at CRAN
Permanent link
Title: Multi-Reader Multi-Case Analysis of Binary Diagnostic Tests
Description: Implements methods for comparing sensitivities and specificities in balanced (or fully crossed) multi-reader multi-case (MRMC) studies with binary diagnostic test results. It implements conditional logistic regression and provides score tests equivalent to Cochran's Q test (which corresponds to McNemar's test when comparing two modalities only). The methodology is based on Lee et al. (2026) <doi:10.1002/sim.70471>.
Author: Seungjae Lee [aut, cre] ,
Woojoo Lee [aut]
Maintainer: Seungjae Lee <seungjae2525@gmail.com>
Diff between MRMCbinary versions 1.0.5 dated 2025-02-20 and 1.0.6 dated 2026-03-23
DESCRIPTION | 13 ++-- MD5 | 37 +++++++------ NEWS.md | 7 ++ R/MRMCbinary-package.R | 4 - R/MRMCbinary.R | 122 ++++++++++++++++++++++++++++------------------ R/SensSpec.R | 48 +++++++++--------- R/VanDyke.R | 29 ++++++---- R/print.MRMCbinary.R | 14 +++-- R/print.SensSpec.R | 8 +-- R/printf_MRMC.R | 36 +++++++++++-- R/summary.MRMCbinary.R | 17 ++++-- R/summaryf_MRMC.R | 25 +++++++-- build |only man/MRMCbinary-package.Rd | 4 - man/MRMCbinary.Rd | 118 +++++++++++++++++++++++++++----------------- man/SensSpec.Rd | 36 +++++++------ man/VanDyke.Rd | 29 ++++++---- man/print.MRMCbinary.Rd | 14 +++-- man/print.SensSpec.Rd | 8 +-- man/summary.MRMCbinary.Rd | 17 ++++-- 20 files changed, 361 insertions(+), 225 deletions(-)
Title: Lipid Annotation for LC-MS/MS DDA or DIA Data
Description: Lipid annotation in untargeted LC-MS lipidomics based on fragmentation rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) <doi:10.1021/acs.analchem.8b03409>.
Author: M Isabel Alcoriza-Balaguer [aut, cre],
Celia Regal-Marques [aut]
Maintainer: M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
Diff between LipidMS versions 3.1.2 dated 2025-12-18 and 3.1.3 dated 2026-03-23
LipidMS-3.1.2/LipidMS/data/carnitinesdb.rda |only LipidMS-3.1.2/LipidMS/man/carnitinesdb.Rd |only LipidMS-3.1.3/LipidMS/DESCRIPTION | 6 LipidMS-3.1.3/LipidMS/MD5 | 32 - LipidMS-3.1.3/LipidMS/R/LipidMS.R | 2 LipidMS-3.1.3/LipidMS/R/additionalFunctions.R | 2 LipidMS-3.1.3/LipidMS/R/dataProcessing.R | 538 ------------------- LipidMS-3.1.3/LipidMS/R/idFunctionsPos.R | 8 LipidMS-3.1.3/LipidMS/R/internaldbs.R | 2 LipidMS-3.1.3/LipidMS/R/msbatchAnnotationFunctions.R | 4 LipidMS-3.1.3/LipidMS/build/vignette.rds |binary LipidMS-3.1.3/LipidMS/data/carnitinedb.rda |only LipidMS-3.1.3/LipidMS/inst/LipidMSapp/app.R | 2 LipidMS-3.1.3/LipidMS/man/alignmsbatch.Rd | 4 LipidMS-3.1.3/LipidMS/man/annotatemsbatch.Rd | 4 LipidMS-3.1.3/LipidMS/man/batchdataProcessing.Rd | 4 LipidMS-3.1.3/LipidMS/man/carnitinedb.Rd |only LipidMS-3.1.3/LipidMS/man/groupmsbatch.Rd | 4 LipidMS-3.1.3/LipidMS/man/idPOS.Rd | 2 19 files changed, 44 insertions(+), 570 deletions(-)
Title: R Client for 'Customer Journey Analytics' ('CJA') API
Description: Connect and pull data from the 'CJA' API, which powers 'CJA Workspace' <https://github.com/AdobeDocs/cja-apis>.
The package was developed with the analyst in mind and will
continue to be developed with the guiding principles of iterative,
repeatable, timely analysis. New features are actively being
developed and we value your feedback and contribution to the process.
Author: Ben Woodard [aut, cre],
Charles Gallagher [ctb],
Braxton Butcher [ctb]
Maintainer: Ben Woodard <benrwoodard@gmail.com>
Diff between cjar versions 0.2.0 dated 2025-01-16 and 0.2.1 dated 2026-03-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 8 ++++++-- R/globals.R | 3 ++- README.md | 7 +++++-- 5 files changed, 21 insertions(+), 13 deletions(-)
Title: Get Spanish Origin-Destination Data
Description: Gain seamless access to origin-destination (OD) data from the
Spanish Ministry of Transport, hosted at
<https://www.transportes.gob.es/ministerio/proyectos-singulares/estudios-de-movilidad-con-big-data/opendata-movilidad>.
This package simplifies the management of these large datasets by
providing tools to download zone boundaries, handle associated
origin-destination data, and process it efficiently with the 'duckdb'
database interface. Local caching minimizes repeated downloads,
streamlining workflows for researchers and analysts. Methods
described in Kotov et al. (2026) <doi:10.1177/23998083251415040>.
Extensive documentation is available at
<https://ropenspain.github.io/spanishoddata/index.html>, offering
guides on creating static and dynamic mobility flow visualizations and
transforming large datasets into analysis-ready formats.
Author: Egor Kotov [aut, cre] ,
Robin Lovelace [aut] ,
Eugeni Vidal-Tortosa [ctb]
Maintainer: Egor Kotov <kotov.egor@gmail.com>
Diff between spanishoddata versions 0.2.2 dated 2026-02-24 and 0.2.3 dated 2026-03-23
DESCRIPTION | 6 MD5 | 24 +-- NEWS.md | 6 R/get-zones.R | 10 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/convert.html | 147 ++++++++++++++++++++- inst/doc/quick-get.html | 144 ++++++++++++++++++++ inst/doc/v1-2020-2021-mitma-data-codebook.html | 147 ++++++++++++++++++++- inst/doc/v2-2022-onwards-mitma-data-codebook.html | 151 +++++++++++++++++++++- inst/doc/v2-2022-onwards-mitma-data-codebook.qmd | 4 inst/schemaorg.json | 4 vignettes/v2-2022-onwards-mitma-data-codebook.qmd | 4 13 files changed, 607 insertions(+), 40 deletions(-)
Title: Statistical Inference in High Dimensional Regression
Description: The goal of SIHR is to provide inference procedures in the high-dimensional generalized linear regression setting for:
(1) linear functionals <doi:10.48550/arXiv.1904.12891> <doi:10.48550/arXiv.2012.07133>,
(2) conditional average treatment effects,
(3) quadratic functionals <doi:10.48550/arXiv.1909.01503>,
(4) inner product,
(5) distance.
Author: Zhenyu Wang [aut],
Prabrisha Rakshit [aut],
Tony Cai [aut],
Zijian Guo [aut, cre]
Maintainer: Zijian Guo <zijguo@stat.rutgers.edu>
Diff between SIHR versions 2.1.0 dated 2024-04-24 and 2.1.1 dated 2026-03-23
DESCRIPTION | 23 +++++++++-------- MD5 | 13 +++++---- NEWS.md |only R/helpers.R | 70 +++++++++++++++++++++++++++++++++++++++-------------- README.md | 11 +++++++- build/vignette.rds |binary inst/CITATION | 14 ++++++++-- inst/doc/SIHR.html | 55 +++++++++++++++++++++++------------------ 8 files changed, 123 insertions(+), 63 deletions(-)
Title: Fitting Linear Models with Endogenous Regressors using Latent
Instrumental Variables
Description: Fits linear models with endogenous regressor using latent instrumental variable approaches.
The methods included in the package are Lewbel's (1997) <doi:10.2307/2171884> higher moments approach as well as
Lewbel's (2012) <doi:10.1080/07350015.2012.643126> heteroscedasticity approach, Park and Gupta's (2012) <doi:10.1287/mksc.1120.0718> joint estimation method
that uses Gaussian copula and Kim and Frees's (2007) <doi:10.1007/s11336-007-9008-1> multilevel generalized
method of moment approach that deals with endogeneity in a multilevel setting.
These are statistical techniques to address the endogeneity problem where no external instrumental variables are needed.
See the publication related to this package in the Journal of Statistical Software for more details: <doi:10.18637/jss.v107.i03>.
Note that with version 2.0.0 sweeping changes were introduced which greatly improve functionality and usability but break backwards compatibility.
Author: Raluca Gui [cre, aut],
Markus Meierer [aut],
Rene Algesheimer [aut],
Patrik Schilter [aut]
Maintainer: Raluca Gui <raluca.gui@gmail.com>
Diff between REndo versions 2.4.10 dated 2024-07-02 and 2.4.11 dated 2026-03-23
DESCRIPTION | 15 ++++++++------- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- NEWS.md | 7 +++++++ R/f_checkinput_multilevel.R | 10 ++++++++-- R/f_multilevelIV.R | 2 +- README.md | 2 +- build/partial.rdb |binary build/vignette.rds |binary 9 files changed, 34 insertions(+), 20 deletions(-)
Title: Interface to 'REDCap'
Description: Access data stored in 'REDCap' databases using the Application
Programming Interface (API). 'REDCap' (Research Electronic Data CAPture;
<https://projectredcap.org>, Harris, et al. (2009) <doi:10.1016/j.jbi.2008.08.010>,
Harris, et al. (2019) <doi:10.1016/j.jbi.2019.103208>) is
a web application for building and managing online surveys and databases
developed at Vanderbilt University. The API allows users to access data
and project meta data (such as the data dictionary) from the web
programmatically. The 'redcapAPI' package facilitates the process of
accessing data with options to prepare an analysis-ready data set
consistent with the definitions in a database's data dictionary.
Author: Benjamin Nutter [ctb, aut],
Shawn Garbett [cre, ctb] ,
Savannah Obregon [ctb],
Thomas Obadia [ctb],
Marcus Lehr [ctb],
Brian High [ctb],
Stephen Lane [ctb],
Will Beasley [ctb],
Will Gray [ctb],
Nick Kennedy [ctb],
Tan Hsi-Nien [ctb],
Jeffrey Horner [ [...truncated...]
Maintainer: Shawn Garbett <shawn.garbett@vumc.org>
Diff between redcapAPI versions 2.11.5 dated 2025-12-09 and 2.12.0 dated 2026-03-23
redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-best-practices.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-casting-data.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-data-validation.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-faq.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-getting-started-connecting.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-missing-data-detection.Rnw |only redcapAPI-2.11.5/redcapAPI/inst/doc/redcapAPI-offline-connection.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-best-practices.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-casting-data.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-data-validation.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-faq.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-getting-started-connecting.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-missing-data-detection.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/precompiled-offline-connection.pdf |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-best-practices.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-casting-data.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-data-validation.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-faq.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-getting-started-connecting.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-missing-data-detection.Rnw |only redcapAPI-2.11.5/redcapAPI/vignettes/redcapAPI-offline-connection.Rnw |only redcapAPI-2.12.0/redcapAPI/DESCRIPTION | 18 - redcapAPI-2.12.0/redcapAPI/MD5 | 149 ++++---- redcapAPI-2.12.0/redcapAPI/NEWS.md | 118 ++++--- redcapAPI-2.12.0/redcapAPI/R/constants.R | 58 +-- redcapAPI-2.12.0/redcapAPI/R/createFileRepositoryFolder.R | 2 redcapAPI-2.12.0/redcapAPI/R/deleteFileRepository.R | 4 redcapAPI-2.12.0/redcapAPI/R/docsRecordsTypedMethods.R | 2 redcapAPI-2.12.0/redcapAPI/R/exportArms.R | 22 - redcapAPI-2.12.0/redcapAPI/R/exportDags.R | 23 - redcapAPI-2.12.0/redcapAPI/R/exportEvents.R | 40 +- redcapAPI-2.12.0/redcapAPI/R/exportExternalCoding.R | 168 +++++----- redcapAPI-2.12.0/redcapAPI/R/exportFieldNames.R | 88 ++--- redcapAPI-2.12.0/redcapAPI/R/exportFileRepository.R | 2 redcapAPI-2.12.0/redcapAPI/R/exportFileRepositoryListing.R | 132 +++---- redcapAPI-2.12.0/redcapAPI/R/exportInstruments.R | 28 - redcapAPI-2.12.0/redcapAPI/R/exportLogging.R | 137 ++++---- redcapAPI-2.12.0/redcapAPI/R/exportMappings.R | 38 +- redcapAPI-2.12.0/redcapAPI/R/exportMetaData.R | 41 +- redcapAPI-2.12.0/redcapAPI/R/exportProjectInformation.R | 5 redcapAPI-2.12.0/redcapAPI/R/exportRecordsTyped.R | 7 redcapAPI-2.12.0/redcapAPI/R/exportRepeatingInstrumentsEvents.R | 26 - redcapAPI-2.12.0/redcapAPI/R/exportReportsTyped.R | 2 redcapAPI-2.12.0/redcapAPI/R/exportSurveyParticipants.R | 58 +-- redcapAPI-2.12.0/redcapAPI/R/exportUserDagAssignments.R | 24 - redcapAPI-2.12.0/redcapAPI/R/exportUserRoleAssignments.R | 2 redcapAPI-2.12.0/redcapAPI/R/exportUserRoles.R | 95 ++--- redcapAPI-2.12.0/redcapAPI/R/exportUsers.R | 2 redcapAPI-2.12.0/redcapAPI/R/importDags.R | 2 redcapAPI-2.12.0/redcapAPI/R/importMetaData.R | 2 redcapAPI-2.12.0/redcapAPI/R/importRecords.R | 2 redcapAPI-2.12.0/redcapAPI/R/importUserDagAssignments.R | 1 redcapAPI-2.12.0/redcapAPI/R/importUsers.R | 25 + redcapAPI-2.12.0/redcapAPI/R/prepUserImportData.R | 21 - redcapAPI-2.12.0/redcapAPI/R/redcapConnection.R | 29 + redcapAPI-2.12.0/redcapAPI/R/redcapDataStructure.R | 33 + redcapAPI-2.12.0/redcapAPI/R/writeDataForImport.R | 17 - redcapAPI-2.12.0/redcapAPI/build/vignette.rds |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-best-practices.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-best-practices.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-casting-data.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-casting-data.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-data-validation.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-data-validation.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-faq.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-faq.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-getting-started-connecting.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-getting-started-connecting.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-missing-data-detection.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-missing-data-detection.pdf.asis |only redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-offline-connection.pdf |binary redcapAPI-2.12.0/redcapAPI/inst/doc/redcapAPI-offline-connection.pdf.asis |only redcapAPI-2.12.0/redcapAPI/man/exportExternalCoding.Rd | 10 redcapAPI-2.12.0/redcapAPI/man/exportFieldNames.Rd | 8 redcapAPI-2.12.0/redcapAPI/man/exportFileRepositoryListing.Rd | 14 redcapAPI-2.12.0/redcapAPI/man/exportInstruments.Rd | 8 redcapAPI-2.12.0/redcapAPI/man/exportLogging.Rd | 18 - redcapAPI-2.12.0/redcapAPI/man/recordsTypedMethods.Rd | 4 redcapAPI-2.12.0/redcapAPI/man/redcapAPI.Rd | 1 redcapAPI-2.12.0/redcapAPI/man/redcapConnection.Rd | 6 redcapAPI-2.12.0/redcapAPI/man/writeDataForImport.Rd | 5 redcapAPI-2.12.0/redcapAPI/tests/testthat/test-020-redcapConnection-ArgumentValidation.R | 46 ++ redcapAPI-2.12.0/redcapAPI/tests/testthat/test-101-userMethods-Functionality.R | 69 +++- redcapAPI-2.12.0/redcapAPI/tests/testthat/test-102-userRoleMethods-ArgumentValidation.R | 23 + redcapAPI-2.12.0/redcapAPI/tests/testthat/test-304-fileRepository-BulkFileMethods-Functionality.R | 7 redcapAPI-2.12.0/redcapAPI/tests/testthat/test-305-exportFileRepositoryListing.R | 5 redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-best-practices.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-casting-data.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-data-validation.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-faq.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-getting-started-connecting.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-missing-data-detection.pdf.asis |only redcapAPI-2.12.0/redcapAPI/vignettes/redcapAPI-offline-connection.pdf.asis |only 93 files changed, 933 insertions(+), 714 deletions(-)
Title: Analysis of Adaptive Immune Receptor Repertoire Germ Line
Statistics
Description: Multiple tools are now available for inferring the personalised
germ line set from an adaptive immune receptor repertoire.
Output from these tools is converted to
a single format and supplemented with rich data such as usage and
characterisation of 'novel' germ line alleles. This data can be
particularly useful when considering the validity of novel inferences. Use
of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.
Author: William Lees [aut, cre]
Maintainer: William Lees <william@lees.org.uk>
Diff between ogrdbstats versions 0.5.4 dated 2025-07-07 and 0.5.5 dated 2026-03-23
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NEWS.md | 7 ++++++- R/sequence_stats.R | 2 +- inst/doc/Using_ogrdbstats.html | 6 +++--- 5 files changed, 21 insertions(+), 15 deletions(-)
Title: Data Analysis for Censored Environmental Data
Description: Contains methods described by Dennis Helsel in
his book "Statistics for Censored Environmental Data
using Minitab and R" (2011) and courses and videos at
<https://practicalstats.com>. This package incorporates functions
of NADA and adds new functionality.
Author: Paul Julian [aut, cre],
Dennis Helsel [aut, cph],
Lopaka Lee [aut, cph]
Maintainer: Paul Julian <pauljulianphd@gmail.com>
Diff between NADA2 versions 2.0.1 dated 2025-09-30 and 2.0.2 dated 2026-03-23
DESCRIPTION | 14 +++++++------- MD5 | 18 +++++++++--------- R/NADA_icmle.R | 4 ++-- R/NADA_ros.R | 4 ++-- R/NADA_summary.R | 46 +++++++++++++++++++++++++++++++++++++--------- build/partial.rdb |binary man/MLEintvl.Rd | 2 +- man/Macmat.Rd | 2 +- man/hc_ppoints_cen.Rd | 2 +- man/hc_ppoints_uncen.Rd | 2 +- 10 files changed, 61 insertions(+), 33 deletions(-)
Title: Ordination and Multivariate Analysis for Ecology
Description: A variety of ordination and community analyses
useful in analysis of data sets in community ecology.
Includes many of the common ordination methods, with
graphical routines to facilitate their interpretation,
as well as several novel analyses.
Author: David W. Roberts [aut, cre]
Maintainer: David W. Roberts <droberts@montana.edu>
Diff between labdsv versions 2.1-2 dated 2025-07-31 and 2.3-0 dated 2026-03-23
DESCRIPTION | 6 +++--- MD5 | 17 +++++++++-------- NAMESPACE | 1 - R/as.dsvord.R | 32 ++++++++++++++++---------------- R/calibrate.R | 2 +- R/indval.R | 12 ------------ inst/ChangeLog | 5 +++++ man/indval.Rd | 15 ++------------- man/isamic.Rd | 8 +++----- src/init.c |only 10 files changed, 39 insertions(+), 59 deletions(-)
Title: Time Series Analysis Library
Description: The library allows to perform a multivariate time series
classification based on the use of Discrete Wavelet Transform for
feature extraction, a step wise discriminant to select the most
relevant features and finally, the use of a linear or quadratic
discriminant for classification. Note that all these steps can be done
separately which allows to implement new steps. Velasco, I., Sipols,
A., de Blas, C. S., Pastor, L., & Bayona, S. (2023)
<doi:10.1186/S12938-023-01079-X>. Percival, D. B., & Walden, A. T.
(2000,ISBN:0521640687). Maharaj, E. A., & Alonso, A. M. (2014)
<doi:10.1016/j.csda.2013.09.006>.
Author: Ivan Velasco [aut, cre, cph]
Maintainer: Ivan Velasco <ivan.velasco@urjc.es>
Diff between TSEAL versions 0.1.4 dated 2026-03-16 and 0.1.5 dated 2026-03-23
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/Discriminant.R | 25 +++++++++++++++++-------- 3 files changed, 22 insertions(+), 13 deletions(-)
Title: Test, Document, Containerise, and Deploy R Packages
Description: Reproducibility is essential to the progress of research,
yet achieving it remains elusive even in computational fields.
Continuous Integration (CI) platforms offer a powerful way to launch automated workflows
to check and document code, but often require considerable time, effort,
and technical expertise to setup. We therefore developed the rworkflows suite
to make robust CI workflows easy and freely accessible to all R package developers.
rworkflows consists of 1) a CRAN/Bioconductor-compatible R package template,
2) an R package to quickly implement a standardised workflow, and
3) a centrally maintained GitHub Action.
Author: Brian Schilder [aut] ,
Alan Murphy [aut, ctb] ,
Hiranyamaya Dash [ctb, cre] ,
Nathan Skene [aut]
Maintainer: Hiranyamaya (Hiru) Dash <hdash.work@gmail.com>
This is a re-admission after prior archival of version 1.0.8 dated 2026-01-08
Diff between rworkflows versions 1.0.8 dated 2026-01-08 and 1.0.10 dated 2026-03-23
DESCRIPTION | 19 +--- MD5 | 42 ++++---- NAMESPACE | 1 NEWS.md | 17 +++ R/construct_authors.R | 2 R/get_description.R | 4 R/get_description_manual.R | 4 R/gha_python_versions.R | 4 README.md | 39 ++++---- build/vignette.rds |binary inst/doc/bioconductor.html | 54 +++++------ inst/doc/depgraph.html | 99 ++++++++++----------- inst/doc/docker.html | 49 +++++----- inst/doc/repos.html | 49 +++++----- inst/doc/rworkflows.html | 150 +++++++++++++++----------------- inst/templates/bug_report.yml | 1 inst/templates/config.yml | 2 man/construct_authors.Rd | 2 man/get_description.Rd | 2 man/get_description_repo.Rd | 6 - man/gha_python_versions.Rd | 2 tests/testthat/test-construct_authors.R | 4 22 files changed, 281 insertions(+), 271 deletions(-)
Title: DicePlot Visualization for 'ggplot2'
Description: Provides 'ggplot2' extensions for creating dice-based visualizations
where each dot position represents a specific categorical variable. The package
includes geom_dice() for displaying presence/absence of categorical variables
using traditional dice patterns. Each dice position (1-6) represents a different
category, with dots shown only when that category is present. This allows
intuitive visualization of up to 6 categorical variables simultaneously.
Author: Matthias Flotho [aut, cre]
Maintainer: Matthias Flotho <matthias.flotho@ccb.uni-saarland.de>
Diff between ggdiceplot versions 1.0.1 dated 2025-12-08 and 1.1.0 dated 2026-03-23
ggdiceplot-1.0.1/ggdiceplot/R/sample_datasets.R |only ggdiceplot-1.1.0/ggdiceplot/DESCRIPTION | 14 ggdiceplot-1.1.0/ggdiceplot/LICENSE | 4 ggdiceplot-1.1.0/ggdiceplot/MD5 | 36 +- ggdiceplot-1.1.0/ggdiceplot/NAMESPACE | 3 ggdiceplot-1.1.0/ggdiceplot/NEWS.md |only ggdiceplot-1.1.0/ggdiceplot/R/geom-dice-ggprotto.R | 182 +++++++++-- ggdiceplot-1.1.0/ggdiceplot/R/geom-dice.R | 18 - ggdiceplot-1.1.0/ggdiceplot/R/ggdiceplot-package.R | 2 ggdiceplot-1.1.0/ggdiceplot/R/sample_dice_data1.R |only ggdiceplot-1.1.0/ggdiceplot/R/sample_dice_data2.R |only ggdiceplot-1.1.0/ggdiceplot/R/sample_dice_large.R |only ggdiceplot-1.1.0/ggdiceplot/R/sample_dice_miRNA.R |only ggdiceplot-1.1.0/ggdiceplot/R/utils.R | 2 ggdiceplot-1.1.0/ggdiceplot/README.md | 270 ++++++----------- ggdiceplot-1.1.0/ggdiceplot/data/sample_dice_data1.rda |binary ggdiceplot-1.1.0/ggdiceplot/data/sample_dice_data2.rda |binary ggdiceplot-1.1.0/ggdiceplot/man/geom_dice.Rd | 14 ggdiceplot-1.1.0/ggdiceplot/man/sample_dice_data1.Rd | 25 - ggdiceplot-1.1.0/ggdiceplot/man/sample_dice_data2.Rd | 22 + ggdiceplot-1.1.0/ggdiceplot/man/sample_dice_large.Rd | 22 + ggdiceplot-1.1.0/ggdiceplot/man/sample_dice_miRNA.Rd | 24 - 22 files changed, 378 insertions(+), 260 deletions(-)
Title: Nonlinear Time Series Analysis
Description: Functions for nonlinear time series analysis. This package permits
the computation of the most-used nonlinear statistics/algorithms
including generalized correlation dimension, information dimension,
largest Lyapunov exponent, sample entropy and Recurrence
Quantification Analysis (RQA), among others. Basic routines
for surrogate data testing are also included. Part of this work
was based on the book "Nonlinear time series analysis" by
Holger Kantz and Thomas Schreiber (ISBN: 9780521529020).
Author: Constantino A. Garcia [aut, cre],
Gunther Sawitzki [ctb]
Maintainer: Constantino A. Garcia <constantino.garciama@ceu.es>
Diff between nonlinearTseries versions 0.3.1 dated 2024-09-23 and 0.3.2 dated 2026-03-23
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/nonlinearTseries_quickstart.html | 19 ++++++++++--------- src/ANN.cpp | 4 ++-- tests/testthat/test_neighbour_search.R | 22 ++++++++++++++++++++++ 6 files changed, 44 insertions(+), 21 deletions(-)
More information about nonlinearTseries at CRAN
Permanent link
Title: Data Wrangling for Antimicrobial Resistance Studies
Description: Designed for analyzing the Medical Information Mart for Intensive Care(MIMIC) dataset,
a repository of freely accessible electronic health records. MIMER(MIMIC-enabled Research) package, offers
a suite of data wrangling functions tailored specifically for preparing the dataset for research purposes,
particularly in antimicrobial resistance(AMR) studies. It simplifies complex data manipulation tasks, allowing
researchers to focus on their primary inquiries without being bogged down by wrangling complexities.
Author: Anoop Velluva [aut] ,
Alessandro Gerada [cre, ctb] ,
Alexander Howard [ctb]
Maintainer: Alessandro Gerada <alessandro.gerada@liverpool.ac.uk>
Diff between MIMER versions 1.0.5 dated 2026-02-28 and 1.0.6 dated 2026-03-23
DESCRIPTION | 17 ++++++++--------- MD5 | 4 ++-- NEWS.md | 2 ++ 3 files changed, 12 insertions(+), 11 deletions(-)
Title: DRESS - A Continuous Framework for Structural Graph Refinement
Description: DRESS is a deterministic, parameter-free framework that
iteratively refines the structural similarity of edges in a graph to
produce a canonical fingerprint: a real-valued edge vector, obtained by
converging a non-linear dynamical system to its unique fixed point. The
fingerprint is isomorphism-invariant by construction, guaranteed
bitwise-equal across any vertex labeling, numerically stable
(no overflow, no error amplification, no undefined behavior), fast and embarrassingly parallel to compute:
DRESS total runtime is O(I * m * d_max) for I iterations to convergence,
and convergence is guaranteed by Birkhoff contraction.
Author: Eduar Castrillo Velilla [aut, cre]
Maintainer: Eduar Castrillo Velilla <velicast@outlook.com>
Diff between dress.graph versions 0.1.2 dated 2026-02-25 and 0.6.2 dated 2026-03-23
dress.graph-0.1.2/dress.graph/src/Makevars |only dress.graph-0.6.2/dress.graph/DESCRIPTION | 34 +- dress.graph-0.6.2/dress.graph/MD5 | 37 +- dress.graph-0.6.2/dress.graph/NAMESPACE | 4 dress.graph-0.6.2/dress.graph/R/cuda.R |only dress.graph-0.6.2/dress.graph/R/dress.R | 186 +++++++++++ dress.graph-0.6.2/dress.graph/R/mpi.R |only dress.graph-0.6.2/dress.graph/README.md |only dress.graph-0.6.2/dress.graph/configure |only dress.graph-0.6.2/dress.graph/inst |only dress.graph-0.6.2/dress.graph/man/DRESS.Rd |only dress.graph-0.6.2/dress.graph/man/cuda.Rd |only dress.graph-0.6.2/dress.graph/man/delta_dress_fit.Rd |only dress.graph-0.6.2/dress.graph/man/mpi.Rd |only dress.graph-0.6.2/dress.graph/src/Makevars.in |only dress.graph-0.6.2/dress.graph/src/Makevars.win |only dress.graph-0.6.2/dress.graph/src/delta_dress.c |only dress.graph-0.6.2/dress.graph/src/delta_dress_cuda.c |only dress.graph-0.6.2/dress.graph/src/delta_dress_impl.c |only dress.graph-0.6.2/dress.graph/src/delta_dress_impl.h |only dress.graph-0.6.2/dress.graph/src/dress.c | 226 +++++++++++-- dress.graph-0.6.2/dress.graph/src/dress/cuda |only dress.graph-0.6.2/dress.graph/src/dress/delta_dress.h |only dress.graph-0.6.2/dress.graph/src/dress/dress.h | 98 +++++ dress.graph-0.6.2/dress.graph/src/dress/mpi |only dress.graph-0.6.2/dress.graph/src/dress_cuda.cu |only dress.graph-0.6.2/dress.graph/src/dress_cuda_r.c |only dress.graph-0.6.2/dress.graph/src/dress_mpi.c |only dress.graph-0.6.2/dress.graph/src/dress_mpi_r.c |only dress.graph-0.6.2/dress.graph/src/dress_r.c | 299 +++++++++++++++++- 30 files changed, 827 insertions(+), 57 deletions(-)
Title: Access Data from the 'Kolada' Database
Description: Methods for downloading and processing data and metadata from 'Kolada', the official Swedish regions and municipalities database <https://www.kolada.se/>.
Author: Love Hansson [aut, cre, cph]
Maintainer: Love Hansson <love.hansson@gmail.com>
Diff between rKolada versions 0.3.0 dated 2026-03-04 and 0.3.1 dated 2026-03-23
rKolada-0.3.0/rKolada/man/pipe.Rd |only rKolada-0.3.0/rKolada/tests/testthat/test_api.R |only rKolada-0.3.1/rKolada/DESCRIPTION | 10 rKolada-0.3.1/rKolada/MD5 | 106 +- rKolada-0.3.1/rKolada/NAMESPACE | 4 rKolada-0.3.1/rKolada/NEWS.md | 28 rKolada-0.3.1/rKolada/R/aaa_utils.R | 89 ++ rKolada-0.3.1/rKolada/R/available.R | 47 - rKolada-0.3.1/rKolada/R/data.R | 118 +-- rKolada-0.3.1/rKolada/R/glue.R | 131 +-- rKolada-0.3.1/rKolada/R/higher_order_metadata.R | 49 - rKolada-0.3.1/rKolada/R/kpi.R | 72 - rKolada-0.3.1/rKolada/R/kpi_groups.R | 54 - rKolada-0.3.1/rKolada/R/metadata.R | 112 +-- rKolada-0.3.1/rKolada/R/municipality.R | 56 - rKolada-0.3.1/rKolada/R/municipality_grp.R | 53 - rKolada-0.3.1/rKolada/R/ou.R | 12 rKolada-0.3.1/rKolada/R/rKolada.R | 17 rKolada-0.3.1/rKolada/R/sysdata.rda |binary rKolada-0.3.1/rKolada/R/table_specs.R | 10 rKolada-0.3.1/rKolada/README.md | 4 rKolada-0.3.1/rKolada/build/vignette.rds |binary rKolada-0.3.1/rKolada/inst/doc/a-quickstart-rkolada.R | 25 rKolada-0.3.1/rKolada/inst/doc/a-quickstart-rkolada.Rmd | 61 + rKolada-0.3.1/rKolada/inst/doc/a-quickstart-rkolada.html | 133 ++- rKolada-0.3.1/rKolada/inst/doc/introduction-to-rkolada.R | 60 - rKolada-0.3.1/rKolada/inst/doc/introduction-to-rkolada.Rmd | 108 +- rKolada-0.3.1/rKolada/inst/doc/introduction-to-rkolada.html | 440 ++++++------ rKolada-0.3.1/rKolada/man/allowed_entities.Rd | 2 rKolada-0.3.1/rKolada/man/compose_data_query.Rd | 2 rKolada-0.3.1/rKolada/man/compose_metadata_query.Rd | 4 rKolada-0.3.1/rKolada/man/generate_kpi_metadata.Rd | 1 rKolada-0.3.1/rKolada/man/get_kpi.Rd | 10 rKolada-0.3.1/rKolada/man/get_metadata.Rd | 14 rKolada-0.3.1/rKolada/man/get_values.Rd | 2 rKolada-0.3.1/rKolada/man/kolada_available.Rd | 7 rKolada-0.3.1/rKolada/man/kolada_cache_dir.Rd |only rKolada-0.3.1/rKolada/man/kolada_clear_cache.Rd |only rKolada-0.3.1/rKolada/man/kpi_bind_keywords.Rd | 4 rKolada-0.3.1/rKolada/man/kpi_extract_ids.Rd | 6 rKolada-0.3.1/rKolada/man/kpi_grp_extract_ids.Rd | 2 rKolada-0.3.1/rKolada/man/kpi_grp_search.Rd | 8 rKolada-0.3.1/rKolada/man/kpi_grp_unnest.Rd | 10 rKolada-0.3.1/rKolada/man/kpi_minimize.Rd | 2 rKolada-0.3.1/rKolada/man/kpi_search.Rd | 8 rKolada-0.3.1/rKolada/man/municipality_extract_ids.Rd | 4 rKolada-0.3.1/rKolada/man/municipality_grp_extract_ids.Rd | 2 rKolada-0.3.1/rKolada/man/municipality_grp_unnest.Rd | 10 rKolada-0.3.1/rKolada/man/municipality_id_to_name.Rd | 8 rKolada-0.3.1/rKolada/man/municipality_name_to_id.Rd | 10 rKolada-0.3.1/rKolada/man/municipality_search.Rd | 4 rKolada-0.3.1/rKolada/man/ou_search.Rd | 6 rKolada-0.3.1/rKolada/man/values_legend.Rd | 4 rKolada-0.3.1/rKolada/man/values_minimize.Rd | 4 rKolada-0.3.1/rKolada/vignettes/a-quickstart-rkolada.Rmd | 61 + rKolada-0.3.1/rKolada/vignettes/introduction-to-rkolada.Rmd | 108 +- 56 files changed, 1161 insertions(+), 941 deletions(-)
Title: Rocket-Fast Clinical Research Reporting
Description: Description of the tables, both grouped and not grouped, with some associated data management actions,
such as sorting the terms of the variables and deleting terms with zero numbers.
Author: USMR CHU de Bordeaux [aut, cre],
Valentine Renaudeau [aut],
Marion Kret [aut],
Matisse Decilap [aut],
Sahardid Mohamed Houssein [aut],
Thomas Ferte [aut]
Maintainer: USMR CHU de Bordeaux <astreinte.usmr@chu-bordeaux.fr>
Diff between RastaRocket versions 1.1.2 dated 2026-02-26 and 1.1.3 dated 2026-03-23
DESCRIPTION | 11 MD5 | 40 - NAMESPACE | 1 NEWS.md | 18 R/base_table.R | 6 R/desc_ei_per_grade.R | 54 + R/desc_ei_per_pt.R | 33 R/desc_var_function.R | 28 R/df_builder_ae.R | 10 R/prepare_table.R | 26 inst/doc/DescribeAE.html | 480 ++++++------ inst/doc/RastaRocketVignette.R | 46 - inst/doc/RastaRocketVignette.Rmd | 55 - inst/doc/RastaRocketVignette.html | 1440 +++++++++++++++++++++++++------------- inst/doc/SetupProject.html | 4 man/base_table.Rd | 5 man/desc_ei_per_grade.Rd | 5 man/desc_ei_per_grade_df_to_gt.Rd | 4 man/desc_var.Rd | 25 man/prepare_table.Rd | 3 vignettes/RastaRocketVignette.Rmd | 55 - 21 files changed, 1468 insertions(+), 881 deletions(-)
Title: Models for Non Linear Causality Detection in Time Series
Description: Models for non-linear time series analysis and causality detection. The main functionalities of this package consist of an implementation of the classical causality test (C.W.J.Granger 1980) <doi:10.1016/0165-1889(80)90069-X>, and a non-linear version of it based on feed-forward neural networks. This package contains also an implementation of the Transfer Entropy <doi:10.1103/PhysRevLett.85.461>, and the continuous Transfer Entropy using an approximation based on the k-nearest neighbors <doi:10.1103/PhysRevE.69.066138>. There are also some other useful tools, like the VARNN (Vector Auto-Regressive Neural Network) prediction model, the Augmented test of stationarity, and the discrete and continuous entropy and mutual information.
Author: Youssef Hmamouche [aut, cre]
Maintainer: Youssef Hmamouche <hmamoucheyussef@gmail.com>
Diff between NlinTS versions 1.4.6 dated 2025-12-16 and 1.4.7 dated 2026-03-23
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- R/modules.R | 42 +++++++++++++++++++++--------------------- build/partial.rdb |binary man/entropy_cont.Rd | 4 ++-- man/entropy_disc.Rd | 2 +- man/mi_cont.Rd | 2 +- man/mi_disc.Rd | 2 +- man/mi_disc_bi.Rd | 2 +- man/nlin_causality.test.Rd | 6 +++--- man/te_cont.Rd | 4 ++-- man/te_disc.Rd | 8 ++++---- man/varmlp.Rd | 12 ++++++------ src/nsEntropy.cpp | 23 +++++++++++------------ 14 files changed, 70 insertions(+), 71 deletions(-)
Title: Correlation-Based and Model-Based Predictor Pruning
Description: Provides functions for predictor pruning using association-based and model-based approaches. Includes corrPrune() for fast correlation-based pruning, modelPrune() for VIF-based regression pruning, and exact graph-theoretic algorithms (Eppstein–Löffler–Strash, Bron–Kerbosch) for exhaustive subset enumeration. Supports linear models, GLMs, and mixed models ('lme4', 'glmmTMB').
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between corrselect versions 3.1.0 dated 2026-01-08 and 3.2.1 dated 2026-03-23
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corrselect-3.2.1/corrselect/MD5 | 223 corrselect-3.2.1/corrselect/NAMESPACE | 13 corrselect-3.2.1/corrselect/NEWS.md | 18 corrselect-3.2.1/corrselect/R/CorrCombo.R | 427 - corrselect-3.2.1/corrselect/R/MatSelect.R | 9 corrselect-3.2.1/corrselect/R/assocSelect.R | 5 corrselect-3.2.1/corrselect/R/corrSelect.R | 3 corrselect-3.2.1/corrselect/R/corrSubset.R | 12 corrselect-3.2.1/corrselect/R/corrselect-package.R | 2 corrselect-3.2.1/corrselect/R/zzz.R |only corrselect-3.2.1/corrselect/README.md | 32 corrselect-3.2.1/corrselect/inst/doc/advanced.Rmd | 60 corrselect-3.2.1/corrselect/inst/doc/advanced.html | 350 corrselect-3.2.1/corrselect/inst/doc/comparison.R | 140 corrselect-3.2.1/corrselect/inst/doc/comparison.Rmd | 1211 +-- corrselect-3.2.1/corrselect/inst/doc/comparison.html | 209 corrselect-3.2.1/corrselect/inst/doc/quickstart.Rmd | 29 corrselect-3.2.1/corrselect/inst/doc/quickstart.html | 199 corrselect-3.2.1/corrselect/inst/doc/theory.Rmd | 3112 ++++--- corrselect-3.2.1/corrselect/inst/doc/theory.html | 772 - corrselect-3.2.1/corrselect/inst/doc/workflows.Rmd | 1771 ++-- corrselect-3.2.1/corrselect/inst/doc/workflows.html | 224 corrselect-3.2.1/corrselect/man/CorrCombo.Rd | 84 corrselect-3.2.1/corrselect/man/assocSelect.Rd | 2 corrselect-3.2.1/corrselect/man/corrSubset.Rd | 6 corrselect-3.2.1/corrselect/man/corrselect-package.Rd | 4 corrselect-3.2.1/corrselect/tests/testthat/test-CorrCombo.R | 990 +- corrselect-3.2.1/corrselect/tests/testthat/test-assocSelect.R | 2644 +++--- corrselect-3.2.1/corrselect/tests/testthat/test-corrMatSelect-bron-kerbosch.R | 12 corrselect-3.2.1/corrselect/tests/testthat/test-corrMatSelect-els.R | 16 corrselect-3.2.1/corrselect/tests/testthat/test-corrPrune.R | 3240 ++++---- corrselect-3.2.1/corrselect/tests/testthat/test-corrSelect.R | 1906 ++-- corrselect-3.2.1/corrselect/tests/testthat/test-corrSubset.R | 360 corrselect-3.2.1/corrselect/tests/testthat/test-modelPrune.R | 3910 +++++----- 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Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement
complex random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain
an efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [...truncated...]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.9.20 dated 2026-03-17 and 1.9.21 dated 2026-03-23
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS | 9 +++++++++ R/TMB.R | 2 ++ R/sdreport.R | 4 ++-- R/validation.R | 2 +- R/zzz.R | 5 ----- man/FreeADFun.Rd | 2 ++ man/oneStepPredict.Rd | 2 +- man/sdreport.Rd | 4 ++-- 10 files changed, 33 insertions(+), 25 deletions(-)
Title: Descriptive Statistics and Data Management Tools
Description: Provides tools for descriptive data analysis,
variable inspection, and quick tabulation workflows in 'R'. Summarizes
variable metadata, labels, classes, missing values, and representative
values, with support for readable frequency tables, cross-tabulations,
association measures for contingency tables (Cramer's V, Phi,
Goodman-Kruskal Gamma, Kendall's Tau-b, Somers' D, and others),
and APA-style reporting tables. Includes helpers for interactive
codebooks, variable label extraction, clipboard export, and row-wise
descriptive summaries. Designed to make descriptive analysis faster,
clearer, and easier to work with in practice.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.5.0 dated 2026-03-14 and 0.6.0 dated 2026-03-23
spicy-0.5.0/spicy/R/cramer_v.R |only spicy-0.6.0/spicy/DESCRIPTION | 18 spicy-0.6.0/spicy/MD5 | 113 +-- spicy-0.6.0/spicy/NAMESPACE | 15 spicy-0.6.0/spicy/NEWS.md | 40 + spicy-0.6.0/spicy/R/assoc.R |only spicy-0.6.0/spicy/R/code_book.R | 5 spicy-0.6.0/spicy/R/copy_clipboard.R | 13 spicy-0.6.0/spicy/R/count_n.R | 63 + spicy-0.6.0/spicy/R/cross_tab.R | 440 ++++++------ spicy-0.6.0/spicy/R/data.R |only spicy-0.6.0/spicy/R/freq.R | 74 +- spicy-0.6.0/spicy/R/freq_print.R | 12 spicy-0.6.0/spicy/R/globals.R | 3 spicy-0.6.0/spicy/R/label_from_names.R | 3 spicy-0.6.0/spicy/R/mean_n.R | 30 spicy-0.6.0/spicy/R/spicy-package.R | 1 spicy-0.6.0/spicy/R/sum_n.R | 30 spicy-0.6.0/spicy/R/table_apa.R | 543 ++++++++++++--- spicy-0.6.0/spicy/R/tables_ascii.R | 2 spicy-0.6.0/spicy/R/varlist.R | 58 - spicy-0.6.0/spicy/README.md | 439 ++++-------- spicy-0.6.0/spicy/build |only spicy-0.6.0/spicy/data |only spicy-0.6.0/spicy/inst/doc |only spicy-0.6.0/spicy/man/assoc_measures.Rd |only spicy-0.6.0/spicy/man/build_ascii_table.Rd | 2 spicy-0.6.0/spicy/man/code_book.Rd | 5 spicy-0.6.0/spicy/man/contingency_coef.Rd |only spicy-0.6.0/spicy/man/copy_clipboard.Rd | 8 spicy-0.6.0/spicy/man/cramer_v.Rd | 74 +- spicy-0.6.0/spicy/man/cross_tab.Rd | 48 - spicy-0.6.0/spicy/man/figures/animation_varlist.gif |only spicy-0.6.0/spicy/man/freq.Rd | 6 spicy-0.6.0/spicy/man/gamma_gk.Rd |only spicy-0.6.0/spicy/man/goodman_kruskal_tau.Rd |only spicy-0.6.0/spicy/man/kendall_tau_b.Rd |only spicy-0.6.0/spicy/man/kendall_tau_c.Rd |only spicy-0.6.0/spicy/man/lambda_gk.Rd |only spicy-0.6.0/spicy/man/phi.Rd |only spicy-0.6.0/spicy/man/print.spicy_assoc_detail.Rd |only spicy-0.6.0/spicy/man/print.spicy_assoc_table.Rd |only spicy-0.6.0/spicy/man/print.spicy_freq_table.Rd | 2 spicy-0.6.0/spicy/man/sochealth.Rd |only spicy-0.6.0/spicy/man/somers_d.Rd |only spicy-0.6.0/spicy/man/spicy-package.Rd | 2 spicy-0.6.0/spicy/man/table_apa.Rd | 86 +- spicy-0.6.0/spicy/man/uncertainty_coef.Rd |only spicy-0.6.0/spicy/man/varlist.Rd | 24 spicy-0.6.0/spicy/man/yule_q.Rd |only spicy-0.6.0/spicy/tests/testthat/test-assoc.R |only spicy-0.6.0/spicy/tests/testthat/test-code_book.R | 47 + spicy-0.6.0/spicy/tests/testthat/test-count_n.R | 38 + spicy-0.6.0/spicy/tests/testthat/test-cramer_v.R | 29 spicy-0.6.0/spicy/tests/testthat/test-cross_tab.R | 404 +++++++++++ spicy-0.6.0/spicy/tests/testthat/test-freq.R | 156 ++++ spicy-0.6.0/spicy/tests/testthat/test-freq_print.R | 8 spicy-0.6.0/spicy/tests/testthat/test-label_from_names.R | 8 spicy-0.6.0/spicy/tests/testthat/test-mean_n.R | 44 + spicy-0.6.0/spicy/tests/testthat/test-sum_n.R | 44 + spicy-0.6.0/spicy/tests/testthat/test-table_apa.R | 525 ++++++++++++++ spicy-0.6.0/spicy/tests/testthat/test-tables_ascii.R | 12 spicy-0.6.0/spicy/tests/testthat/test-varlist.R | 205 +++++ spicy-0.6.0/spicy/vignettes |only 64 files changed, 2855 insertions(+), 824 deletions(-)
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations
on them. Data types include point patterns, windows (domains),
pixel images, line segment patterns, tessellations and hyperframes.
Capabilities include creation and manipulation of data
(using command line or graphical interaction),
plotting, geometrical operations (rotation, shift, rescale,
affine transformation), convex hull, discretisation and
pixellation, Dirichlet tessellation, Delaunay triangulation,
pairwise distances, nearest-neighbour distances,
distance transform, morphological operations
(erosion, dilation, closing, opening), quadrat counting,
geometrical measurement, geometrical covariance,
colour maps, calculus on spatial domains,
Gaussian blur, level sets of images, transects of images,
intersections between objects, minimum distance matching.
(Excludes spatial data on a network, which are supported by
the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Warick Brown [ctb],
Tilman Davies [ctb],
Ute Hahn [ctb],
Martin Hazelton [ctb],
Abdollah Jalilian [ctb],
Greg McSwiggan [ctb, cph],
Sebastian Meyer [ctb, cph],
Jens Oeh [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 3.7-2 dated 2026-03-21 and 3.7-3 dated 2026-03-23
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ NEWS | 16 +++++++++++++++ inst/doc/packagesizes.txt | 2 - inst/info/packagesizes.txt | 2 - src/exactdist.c | 6 ++--- tests/testsNtoO.R | 47 +++++++++++++++++++++++++++++++++------------ 7 files changed, 66 insertions(+), 27 deletions(-)
Title: Election Vote Counting with Safety Features
Description: Fork of 'vote_2.3-2', Raftery et al. (2021)
<DOI:10.32614/RJ-2021-086>, with additional support
for stochastic experimentation.
Author: Clark Thomborson [cre, aut]
Maintainer: Clark Thomborson <c.thomborson@auckland.ac.nz>
Diff between SafeVote versions 1.0.1 dated 2024-10-05 and 1.0.2 dated 2026-03-23
SafeVote-1.0.1/SafeVote/NEWS.md |only SafeVote-1.0.1/SafeVote/man/view.Rd |only SafeVote-1.0.2/SafeVote/ChangeLog |only SafeVote-1.0.2/SafeVote/DESCRIPTION | 16 SafeVote-1.0.2/SafeVote/MD5 | 110 +++-- SafeVote-1.0.2/SafeVote/NAMESPACE | 106 ++--- SafeVote-1.0.2/SafeVote/R/check_votes.R | 22 + SafeVote-1.0.2/SafeVote/R/condorcet.R | 2 SafeVote-1.0.2/SafeVote/R/data.R | 156 ++++---- SafeVote-1.0.2/SafeVote/R/saferank.R | 34 - SafeVote-1.0.2/SafeVote/R/stv.R | 92 ++-- SafeVote-1.0.2/SafeVote/R/vote_by_sum.R | 2 SafeVote-1.0.2/SafeVote/README.md | 146 +++++-- SafeVote-1.0.2/SafeVote/build/partial.rdb |binary SafeVote-1.0.2/SafeVote/data/auckland2022.rda |only SafeVote-1.0.2/SafeVote/data/dublin_west_vote_count.rda |only SafeVote-1.0.2/SafeVote/data/dublin_west_vote_count_3seats.rda |only SafeVote-1.0.2/SafeVote/data/gisborne2022.rda |only SafeVote-1.0.2/SafeVote/data/gisborne2022analysis.rda |only SafeVote-1.0.2/SafeVote/data/hamilton2022.rda |only SafeVote-1.0.2/SafeVote/data/hamilton2022analysis.rda |only SafeVote-1.0.2/SafeVote/data/wellington2022analysis.rda |only SafeVote-1.0.2/SafeVote/man/SafeVote-package.Rd | 1 SafeVote-1.0.2/SafeVote/man/a3_hil.Rd | 60 +-- SafeVote-1.0.2/SafeVote/man/a4_hil.Rd | 52 +- SafeVote-1.0.2/SafeVote/man/a53_hil.Rd | 2 SafeVote-1.0.2/SafeVote/man/as.SafeRankExpt.Rd | 34 - SafeVote-1.0.2/SafeVote/man/auckland2022.Rd |only SafeVote-1.0.2/SafeVote/man/dublin_west.Rd | 2 SafeVote-1.0.2/SafeVote/man/dublin_west_vote_count.Rd |only SafeVote-1.0.2/SafeVote/man/dublin_west_vote_count_3seats.Rd |only SafeVote-1.0.2/SafeVote/man/extractMargins.Rd | 50 +- SafeVote-1.0.2/SafeVote/man/figures/README-yaleHare-1.png |only SafeVote-1.0.2/SafeVote/man/figures/README-yaleHare-2.png |only SafeVote-1.0.2/SafeVote/man/food_election.Rd | 2 SafeVote-1.0.2/SafeVote/man/gisborne2022.Rd |only SafeVote-1.0.2/SafeVote/man/gisborne2022analysis.Rd |only SafeVote-1.0.2/SafeVote/man/hamilton2022.Rd |only SafeVote-1.0.2/SafeVote/man/hamilton2022analysis.Rd |only SafeVote-1.0.2/SafeVote/man/ims_approval.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_election.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_plurality.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_score.Rd | 2 SafeVote-1.0.2/SafeVote/man/ims_stv.Rd | 2 SafeVote-1.0.2/SafeVote/man/invalid.votes.Rd | 40 +- SafeVote-1.0.2/SafeVote/man/is.SafeRankExpt.Rd | 34 - SafeVote-1.0.2/SafeVote/man/new_SafeRankExpt.Rd | 99 ++--- SafeVote-1.0.2/SafeVote/man/plot.SafeRankExpt.Rd | 190 +++++----- SafeVote-1.0.2/SafeVote/man/print.summary.SafeRankExpt.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/rbind_SafeRankExpt.Rd | 4 SafeVote-1.0.2/SafeVote/man/readHil.Rd | 64 +-- SafeVote-1.0.2/SafeVote/man/stv.Rd | 9 SafeVote-1.0.2/SafeVote/man/summary.SafeRankExpt.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/testAdditions.Rd | 12 SafeVote-1.0.2/SafeVote/man/testDeletions.Rd | 7 SafeVote-1.0.2/SafeVote/man/testFraction.Rd | 6 SafeVote-1.0.2/SafeVote/man/uk_labour_2010.Rd | 40 +- SafeVote-1.0.2/SafeVote/man/view.SafeVote.Rd |only SafeVote-1.0.2/SafeVote/man/view.SafeVote.approval.Rd | 34 - SafeVote-1.0.2/SafeVote/man/view.SafeVote.condorcet.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/view.SafeVote.plurality.Rd | 34 - SafeVote-1.0.2/SafeVote/man/view.SafeVote.score.Rd | 2 SafeVote-1.0.2/SafeVote/man/view.SafeVote.stv.Rd | 38 +- SafeVote-1.0.2/SafeVote/man/wellington2022analysis.Rd |only SafeVote-1.0.2/SafeVote/man/yale_ballots.Rd | 40 +- SafeVote-1.0.2/SafeVote/tests/testthat.R | 24 - SafeVote-1.0.2/SafeVote/tests/testthat/test-stv-regress.R | 23 - 67 files changed, 922 insertions(+), 791 deletions(-)
Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and
high-performance 2D drawing library. The 'ragg' package provides a set
of graphic devices based on AGG to use as alternative to the raster
devices provided through the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut] ,
Maxim Shemanarev [aut, cph] ,
Tony Juricic [ctb, cph] ,
Milan Marusinec [ctb, cph] ,
Spencer Garrett [ctb] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ragg versions 1.5.1 dated 2026-03-06 and 1.5.2 dated 2026-03-23
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ src/AggDevice.h | 1 + src/record_dev.cpp | 5 ----- 5 files changed, 12 insertions(+), 12 deletions(-)
Title: Creation of Mock Observational Medical Outcomes Partnership
Common Data Model
Description: Creates mock data for testing and package development for the
Observational Medical Outcomes Partnership common data model. The
package offers functions crafted with pipeline-friendly
implementation, enabling users to effortlessly include only the
necessary tables for their testing needs.
Author: Mike Du [aut, cre] ,
Marti Catala [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Mike Du <mike.du@ndorms.ox.ac.uk>
Diff between omock versions 0.6.1 dated 2026-02-03 and 0.6.2 dated 2026-03-23
DESCRIPTION | 6 MD5 | 46 ++-- NEWS.md | 118 ++++++----- R/mockDatasets.R | 5 README.md | 12 - build/vignette.rds |binary data/mockDatasets.rda |binary inst/doc/mock_from_tables.html | 49 ++-- inst/doc/synthetic_clinical_tables.Rmd | 2 inst/doc/synthetic_clinical_tables.html | 23 +- inst/doc/synthetic_cohorts.Rmd | 2 inst/doc/synthetic_cohorts.html | 9 inst/doc/synthetic_datasets.Rmd | 2 inst/doc/synthetic_datasets.html | 180 +++++++++--------- inst/doc/synthetic_vocabulary.Rmd | 2 inst/doc/synthetic_vocabulary.html | 10 - vignettes/a01_Creating_synthetic_clinical_tables.R |only vignettes/a01_Creating_synthetic_clinical_tables.html |only vignettes/a02_Creating_synthetic_cohorts.R |only vignettes/a02_Creating_synthetic_cohorts.html |only vignettes/a03_Creating_a_synthetic_vocabulary.R |only vignettes/a03_Creating_a_synthetic_vocabulary.html |only vignettes/a04_Building_a_bespoke_mock_cdm.R |only vignettes/a04_Building_a_bespoke_mock_cdm.html |only vignettes/synthetic_clinical_tables.Rmd | 2 vignettes/synthetic_cohorts.Rmd | 2 vignettes/synthetic_datasets.Rmd | 2 vignettes/synthetic_vocabulary.Rmd | 2 28 files changed, 251 insertions(+), 223 deletions(-)
Title: Synthesise and Correlate Likert Scale and Rating-Scale Data
Based on Summary Statistics
Description: Generate and correlate synthetic Likert and rating-scale
questionnaire responses with predefined means, standard deviations,
Cronbach's Alpha, Factor Loading table, coefficients, and other summary
statistics.
It can be used to simulate Likert data, construct multi-item scales,
generate correlation matrices, and create example survey datasets for
teaching statistics, psychometrics, and methodological research.
Worked examples and documentation are available in the package
articles, accessible via the package website,
<https://winzarh.github.io/LikertMakeR/>.
Author: Hume Winzar [cre, aut]
Maintainer: Hume Winzar <winzar@gmail.com>
Diff between LikertMakeR versions 1.4.0 dated 2026-02-11 and 2.0.0 dated 2026-03-23
LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.R |only LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.Rmd |only LikertMakeR-1.4.0/LikertMakeR/inst/doc/lfast_infographic.html |only LikertMakeR-1.4.0/LikertMakeR/inst/pkgdown |only LikertMakeR-1.4.0/LikertMakeR/vignettes/img/lfast_infographic_t.png |only LikertMakeR-1.4.0/LikertMakeR/vignettes/lfast_infographic.Rmd |only LikertMakeR-2.0.0/LikertMakeR/.Rinstignore | 2 LikertMakeR-2.0.0/LikertMakeR/DESCRIPTION | 28 LikertMakeR-2.0.0/LikertMakeR/MD5 | 82 LikertMakeR-2.0.0/LikertMakeR/NAMESPACE | 7 LikertMakeR-2.0.0/LikertMakeR/NEWS.md | 107 LikertMakeR-2.0.0/LikertMakeR/R/alpha.R | 30 LikertMakeR-2.0.0/LikertMakeR/R/alpha_sensitivity.R |only LikertMakeR-2.0.0/LikertMakeR/R/correlateScales.R | 2 LikertMakeR-2.0.0/LikertMakeR/R/makeCorrAlpha.R | 656 - LikertMakeR-2.0.0/LikertMakeR/R/makeCorrLoadings.R | 6 LikertMakeR-2.0.0/LikertMakeR/R/makeItemsScale.R | 323 LikertMakeR-2.0.0/LikertMakeR/R/makePaired.R | 9 LikertMakeR-2.0.0/LikertMakeR/R/makeRepeated.R | 4 LikertMakeR-2.0.0/LikertMakeR/R/makeScales.R | 5 LikertMakeR-2.0.0/LikertMakeR/R/makeScalesRegression.R | 1141 +- LikertMakeR-2.0.0/LikertMakeR/R/reliability.R | 2 LikertMakeR-2.0.0/LikertMakeR/README.md | 26 LikertMakeR-2.0.0/LikertMakeR/build/vignette.rds |binary LikertMakeR-2.0.0/LikertMakeR/inst/WORDLIST | 217 LikertMakeR-2.0.0/LikertMakeR/inst/doc/LikertMakeR_vignette.R | 53 LikertMakeR-2.0.0/LikertMakeR/inst/doc/LikertMakeR_vignette.Rmd | 3914 ++++------ LikertMakeR-2.0.0/LikertMakeR/inst/doc/LikertMakeR_vignette.html | 2598 ++---- LikertMakeR-2.0.0/LikertMakeR/inst/doc/reliability_measures.R | 7 LikertMakeR-2.0.0/LikertMakeR/inst/doc/reliability_measures.Rmd | 1435 +-- LikertMakeR-2.0.0/LikertMakeR/inst/doc/reliability_measures.html | 55 LikertMakeR-2.0.0/LikertMakeR/man/alpha.Rd | 3 LikertMakeR-2.0.0/LikertMakeR/man/alpha_sensitivity.Rd |only LikertMakeR-2.0.0/LikertMakeR/man/makeCorrAlpha.Rd | 145 LikertMakeR-2.0.0/LikertMakeR/man/makeItemsScale.Rd | 176 LikertMakeR-2.0.0/LikertMakeR/man/makePaired.Rd | 9 LikertMakeR-2.0.0/LikertMakeR/man/makeScales.Rd | 9 LikertMakeR-2.0.0/LikertMakeR/man/print.makeScalesRegression.Rd | 1 LikertMakeR-2.0.0/LikertMakeR/man/reliability.Rd | 2 LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-alpha_sensitivity.R |only LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-makeCorrAlpha.R | 41 LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-reliability-basic.R | 75 LikertMakeR-2.0.0/LikertMakeR/tests/testthat/test-reliability-options.R | 94 LikertMakeR-2.0.0/LikertMakeR/vignettes/LikertMakeR_vignette.Rmd | 3914 ++++------ LikertMakeR-2.0.0/LikertMakeR/vignettes/img/dwevedi_model.png |only LikertMakeR-2.0.0/LikertMakeR/vignettes/img/flow_makeItemsScale.png |only LikertMakeR-2.0.0/LikertMakeR/vignettes/img/flow_rearrangeRowValues.png |only LikertMakeR-2.0.0/LikertMakeR/vignettes/preamble.tex |only LikertMakeR-2.0.0/LikertMakeR/vignettes/reliability_measures.Rmd | 1435 +-- 49 files changed, 8063 insertions(+), 8550 deletions(-)
Title: Helper Functions for Species Delimitation Analysis
Description: Helpers functions to process, analyse, and visualize the output of
single locus species delimitation methods.
For full functionality, please install suggested software at
<https://legallab.github.io/delimtools/articles/install.html>.
Author: Pedro Bittencourt [aut, cre, cph] ,
Rupert Collins [aut, ctb, cph] ,
Tomas Hrbek [aut, ctb]
Maintainer: Pedro Bittencourt <pedro.sennabittencourt@gmail.com>
This is a re-admission after prior archival of version 0.2.1 dated 2025-09-29
Diff between delimtools versions 0.2.1 dated 2025-09-29 and 0.2.2 dated 2026-03-23
delimtools-0.2.1/delimtools/vignettes/geophagus.abgd.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.disthist.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Histo.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.HistoCum.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_1.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_1.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_10.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_10.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_2.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_2.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_3.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_3.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_4.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_4.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_5.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_5.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_6.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_6.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_7.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_7.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_8.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_8.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_9.csv |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.Partition_9.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.clado.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.curve.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.groups.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.spart |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.spart.xml |only delimtools-0.2.1/delimtools/vignettes/geophagus.fasta.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.1.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.2.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.3.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.4.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.5.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.6.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.7.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.part.8.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.1.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.2.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.3.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.4.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.5.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.6.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.7.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.partinit.8.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus.rank.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.multi.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.multi.txt |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.single.svg |only delimtools-0.2.1/delimtools/vignettes/geophagus_raxml.nwk.mptp.single.txt |only delimtools-0.2.2/delimtools/DESCRIPTION | 8 delimtools-0.2.2/delimtools/MD5 | 93 ++-------- delimtools-0.2.2/delimtools/NEWS.md | 4 delimtools-0.2.2/delimtools/R/abgd_tbl.R | 35 +++ delimtools-0.2.2/delimtools/R/asap_tbl.R | 29 ++- delimtools-0.2.2/delimtools/R/bgmyc_tbl.R | 8 delimtools-0.2.2/delimtools/R/clean_dna.R | 2 delimtools-0.2.2/delimtools/R/confidence_intervals.R | 11 - delimtools-0.2.2/delimtools/R/delim_join.R | 22 +- delimtools-0.2.2/delimtools/R/gmyc_tbl.R | 6 delimtools-0.2.2/delimtools/R/match_ratio.R | 2 delimtools-0.2.2/delimtools/R/mptp_tbl.R | 10 - delimtools-0.2.2/delimtools/README.md | 65 ++---- delimtools-0.2.2/delimtools/build/vignette.rds |binary delimtools-0.2.2/delimtools/man/abgd_tbl.Rd | 6 delimtools-0.2.2/delimtools/man/asap_tbl.Rd | 4 delimtools-0.2.2/delimtools/man/bgmyc_tbl.Rd | 8 delimtools-0.2.2/delimtools/man/confidence_intervals.Rd | 11 - delimtools-0.2.2/delimtools/man/delim_join.Rd | 22 +- delimtools-0.2.2/delimtools/man/figures/README-example-1.png |binary delimtools-0.2.2/delimtools/man/gmyc_tbl.Rd | 6 delimtools-0.2.2/delimtools/man/mptp_tbl.Rd | 10 - 73 files changed, 168 insertions(+), 194 deletions(-)
Title: A Toolkit for Connecting R and Large Language Models
Description: A complete toolkit for connecting 'R' environments with Large
Language Models (LLMs). Provides utilities for describing 'R' objects,
package documentation, and workspace state in plain text formats
optimized for LLM consumption. Supports multiple workflows:
interactive copy-paste to external chat interfaces, programmatic tool
registration with 'ellmer' chat clients, batteries-included chat
applications via 'shinychat', and exposure to external coding agents
through the Model Context Protocol. Project configuration files enable
stable, repeatable conversations with project-specific context and
preferred LLM settings.
Author: Garrick Aden-Buie [aut, cre] ,
Simon Couch [aut] ,
Joe Cheng [aut],
Posit Software, PBC [cph, fnd],
Google [cph] ,
Microsoft [cph] ,
Jamie Perkins [cph]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between btw versions 1.2.0 dated 2026-03-16 and 1.2.1 dated 2026-03-23
DESCRIPTION | 6 +- MD5 | 34 ++++++------- NEWS.md | 8 +++ R/edit_btw_md.R | 12 ++-- R/tool-files-edit.R | 93 +++++++++++++++++++++++++++++++++++- R/tool-files-read.R | 28 ++++++++++ R/tool-files-replace.R | 35 ++++++++++++- R/tool-skills.R | 57 ++++++++++++++++------ R/utils.R | 26 ++++++---- exec/btw.R | 5 - man/btw_skill_install_github.Rd | 5 + man/btw_skill_install_package.Rd | 5 + man/btw_tool_files_edit.Rd | 97 ++++++++++++++++++++++++++++++++++++-- man/btw_tool_files_read.Rd | 29 ++++++++++- man/btw_tool_files_replace.Rd | 37 ++++++++++++-- man/btw_tool_skill.Rd | 5 + man/use_btw_md.Rd | 12 ++-- tests/testthat/test-tool_skills.R | 34 +++++++++++++ 18 files changed, 445 insertions(+), 83 deletions(-)
Title: Access to the List of Bird Species of Peru
Description: Provides access to the species checklist published in
'List of the Birds of Peru' by Plenge, M. A. and Angulo, F.
(version 29-12-2025) <https://sites.google.com/site/boletinunop/checklist>.
The package exposes the current Peru bird checklist as an R dataset and
includes tools for species lookup, taxonomic reconciliation, and fuzzy
matching of scientific names. These features help streamline taxonomic
validation for researchers and conservationists.
Author: Paul E. Santos Andrade [aut, cre, cph]
Maintainer: Paul E. Santos Andrade <paulefrens@gmail.com>
Diff between avesperu versions 0.0.8 dated 2026-01-08 and 0.1.0 dated 2026-03-23
avesperu-0.0.8/avesperu/tests/testthat/test-test_search_avesperu.R |only avesperu-0.1.0/avesperu/DESCRIPTION | 22 avesperu-0.1.0/avesperu/MD5 | 41 + avesperu-0.1.0/avesperu/NAMESPACE | 2 avesperu-0.1.0/avesperu/R/aves_peru_2025_v5.R | 13 avesperu-0.1.0/avesperu/R/aves_peru_data.R | 3 avesperu-0.1.0/avesperu/R/get_avesperu.R | 96 ++- avesperu-0.1.0/avesperu/R/internals.R | 262 ++++++---- avesperu-0.1.0/avesperu/R/onload.R | 33 - avesperu-0.1.0/avesperu/R/shiny-app.R |only avesperu-0.1.0/avesperu/README.md | 31 + avesperu-0.1.0/avesperu/inst/extdata |only avesperu-0.1.0/avesperu/man/aves_peru_2025_v4.Rd | 3 avesperu-0.1.0/avesperu/man/aves_peru_2025_v5.Rd | 13 avesperu-0.1.0/avesperu/man/figures/README-unnamed-chunk-3-1.png |only avesperu-0.1.0/avesperu/man/figures/shiny_app.png |only avesperu-0.1.0/avesperu/man/parse_unop_date.Rd |only avesperu-0.1.0/avesperu/man/run_avesperu_app.Rd |only avesperu-0.1.0/avesperu/man/search_avesperu.Rd | 3 avesperu-0.1.0/avesperu/man/unop_check_update.Rd | 20 avesperu-0.1.0/avesperu/tests/testthat/helper-expectations.R |only avesperu-0.1.0/avesperu/tests/testthat/test-find-duplicates.R |only avesperu-0.1.0/avesperu/tests/testthat/test-parallel-processing.R |only avesperu-0.1.0/avesperu/tests/testthat/test-result-creators.R |only avesperu-0.1.0/avesperu/tests/testthat/test-search-avesperu.R |only avesperu-0.1.0/avesperu/tests/testthat/test-shiny-app-helpers.R |only avesperu-0.1.0/avesperu/tests/testthat/test-standardize-names.R |only avesperu-0.1.0/avesperu/tests/testthat/test-unop-check-update.R |only 28 files changed, 378 insertions(+), 164 deletions(-)
Title: 'AV1' Video Encoding for Biological Microscopy Data
Description: Converts legacy microscopy video formats (H.264/H.265, AVI/MJPEG,
TIFF stacks) to the modern 'AV1' codec with minimal quality loss. Typical
use cases include compressing large TIFF stacks from confocal microscopy and
time-lapse experiments from hundreds of gigabytes to manageable sizes,
re-encoding MP4 files exported from 'CellProfiler', 'ImageJ'/'Fiji', and
microscope software with approximately 2x better compression at the same
visual quality, and converting legacy AVI (MJPEG) and H.265 recordings to a
single patent-free format suited for long-term archival. Automatically selects
the best available backend: GPU hardware acceleration via 'Vulkan'
'VK_KHR_VIDEO_ENCODE_AV1' or 'VAAPI' (tested on AMD RDNA4; bundled headers,
builds with any 'Vulkan' SDK >= 1.3.275), with automatic fallback to CPU
encoding through 'FFmpeg' and 'SVT-AV1'. User controls quality via a single
CRF parameter; each backend adapts automatically (CPU and Vulkan use CRF
directly, VAAPI targets 55 percent of input [...truncated...]
Author: Yuri Baramykov [aut, cre]
Maintainer: Yuri Baramykov <lbsbmsu@mail.ru>
Diff between AV1R versions 0.1.2 dated 2026-03-05 and 0.1.3 dated 2026-03-23
DESCRIPTION | 20 + MD5 | 61 +++-- NEWS.md | 53 ++++ R/backend.R | 54 +++- R/batch.R | 239 ++++++++++++++++----- R/convert.R | 348 ++++++++++++++++++++++++++------ R/input.R | 2 R/options.R | 65 ++++- R/quality.R | 188 ++++++++++++++++- R/utils.R | 4 README.md | 101 ++++++++- inst/examples/batch_convert.R |only inst/examples/benchmark_backends.R |only inst/examples/calibrate_crf.R |only inst/examples/calibrate_raw.R |only inst/examples/calibrate_tiff_crf.R |only inst/examples/calibrate_vaapi_bitrate.R |only inst/examples/calibrate_vaapi_cqp.R |only inst/examples/encode_gpu.R | 8 inst/examples/tiff_scale.R |only man/AV1R-package.Rd | 2 man/av1r_options.Rd | 25 +- man/convert_folder.Rd | 27 ++ man/convert_to_av1.Rd | 5 man/detect_backend.Rd | 10 man/read_tiff_stack.Rd | 2 src/av1r_bindings.cpp | 1 src/av1r_encode_vulkan.cpp | 11 - src/av1r_vk_video_loader.h | 1 tests/testthat/test-backend.R | 39 +++ tests/testthat/test-batch.R | 2 tests/testthat/test-compute-size.R |only tests/testthat/test-encode.R |only tests/testthat/test-ffmpeg.R | 50 ++++ tests/testthat/test-options.R | 55 +++++ tests/testthat/test-quality-internal.R |only tests/testthat/test-tiff.R |only tests/testthat/test-utils.R |only 38 files changed, 1143 insertions(+), 230 deletions(-)
Title: Parse 'User-Agent' Strings
Description: Despite there being a section in RFC 7231
<https://datatracker.ietf.org/doc/html/rfc7231#section-5.5.3> defining a suggested
structure for 'User-Agent' headers this data is notoriously difficult
to parse consistently. Tools are provided that will take in user agent
strings and return structured R objects. This is a 'V8'-backed package
based on the 'ua-parser' project <https://github.com/ua-parser>.
Author: Bob Rudis [aut, cph],
Greg Hunt [aut, cre, cph],
Lindsey Simon [aut] ,
Tobie Langel [aut] ,
Colman Humphrey [ctb]
Maintainer: Greg Hunt <greg@firmansyah.com>
Diff between uaparserjs versions 0.3.5 dated 2020-05-11 and 0.3.6 dated 2026-03-23
DESCRIPTION | 22 +++++++++-------- LICENSE | 3 +- MD5 | 11 ++++---- NEWS.md | 12 ++++++--- README.md | 49 ++-------------------------------------- inst/js/newbuild |only inst/tinytest/test_uaparserjs.R | 9 ++++++- 7 files changed, 39 insertions(+), 67 deletions(-)
Title: University of Cincinnati Themes and Utilities for Econometrics
and Data Science
Description: Provides plotting helpers, table-formatting utilities, and
report templates for econometrics, model development, and applied data
analysis. Includes University of Cincinnati branded themes for
'ggplot2', 'modelsummary', 'flextable', 'rmarkdown', 'bookdown', and
'quarto'.
Author: Saannidhya Rawat [aut, cre]
Maintainer: Saannidhya Rawat <rawatsa@mail.uc.edu>
Diff between Rbearcat versions 0.2.1 dated 2026-03-21 and 0.2.2 dated 2026-03-23
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/aaa_uc_brand.R | 8 ++++---- inst/doc/formatting.html | 2 +- inst/rmarkdown/templates/bcat_beamer/skeleton/skeleton.Rmd | 2 +- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Develop Hybridization Probes
Description: Hybridization probes for target sequences can be made based on melting temperature value calculated by R package 'TmCalculator' <https://CRAN.R-project.org/package=TmCalculator> and methods extended from Beliveau, B. J.,(2018) <doi:10.1073/pnas.1714530115>, and those hybridization probes can be used to capture specific target regions in fluorescence in situ hybridization and next generation sequence experiments.
Author: Junhui Li [cre, aut]
Maintainer: Junhui Li <ljh.biostat@gmail.com>
Diff between ProbeDeveloper versions 1.1.0 dated 2022-01-30 and 1.1.1 dated 2026-03-23
DESCRIPTION | 20 - MD5 | 8 NAMESPACE | 7 R/ProbeMake.R | 802 ++++++++++++++++++++++++++++--------------------------- man/ProbeMake.Rd | 59 ++-- 5 files changed, 466 insertions(+), 430 deletions(-)
More information about ProbeDeveloper at CRAN
Permanent link
Title: Graph Prediction from a Graph Time Series
Description: Predicting the structure of a graph including new nodes and edges using
a time series of graphs. Flux balance analysis, a linear and integer programming
technique used in biochemistry is used with time series prediction methods to
predict the graph structure at a future time point
Kandanaarachchi (2025) <doi:10.48550/arXiv.2507.05806>.
Author: Sevvandi Kandanaarachchi [aut, cre] ,
Stefan Westerlund [aut]
Maintainer: Sevvandi Kandanaarachchi <sevvandik@gmail.com>
Diff between netseer versions 0.1.2 dated 2025-09-10 and 0.1.3 dated 2026-03-23
DESCRIPTION | 12 +++++++----- MD5 | 21 +++++++++++++++++---- NAMESPACE | 5 +++++ R/functions.R | 3 +++ R/measure_error.R |only R/read_graphs.R |only R/syngraphs-data.R |only data |only inst/doc/netseer.html | 12 ++++++------ inst/extdata |only man/load_graphs.Rd |only man/load_graphs_dir.Rd |only man/load_graphs_list.Rd |only man/measure_error.Rd |only man/save_graphs.Rd |only man/syngraphs.Rd |only 16 files changed, 38 insertions(+), 15 deletions(-)
Title: Models for Correlation Matrices Based on Graphs
Description: Implement some models for
correlation/covariance matrices including two approaches
to model correlation matrices from a graphical structure.
One use latent parent variables as proposed in
Sterrantino et. al. (2024) <doi:10.1007/s10260-025-00788-y>.
The other uses a graph to specify conditional
relations between the variables.
The graphical structure makes correlation matrices
interpretable and avoids the quadratic increase of
parameters as a function of the dimension.
In the first approach a natural sequence of simpler
models along with a complexity penalization is used.
The second penalizes deviations from a base model.
These can be used as prior for model parameters,
considering C code through the 'cgeneric' interface
for the 'INLA' package (<https://www.r-inla.org>).
This allows one to use these models as building
blocks combined and to other latent Gaussian models
in order to build complex data models.
Author: Elias Teixeira Krainski [cre, aut, cph] ,
Denis Rustand [aut, cph] ,
Anna Freni-Sterrantino [aut, cph] ,
Janet van Niekerk [aut, cph] ,
Haavard Rue’ [aut]
Maintainer: Elias Teixeira Krainski <eliaskrainski@gmail.com>
This is a re-admission after prior archival of version 0.1.15 dated 2026-01-15
Diff between graphpcor versions 0.1.15 dated 2026-01-15 and 0.1.24 dated 2026-03-23
graphpcor-0.1.15/graphpcor/R/aaa_classes.R |only graphpcor-0.1.15/graphpcor/R/aaa_methods.R |only graphpcor-0.1.15/graphpcor/R/cgeneric_pc_prec_correl.R |only graphpcor-0.1.15/graphpcor/inst/doc/treepcor.pdf |only graphpcor-0.1.15/graphpcor/man/KLD10.Rd |only graphpcor-0.1.15/graphpcor/man/Lprec0.Rd |only graphpcor-0.1.15/graphpcor/man/basecor-class.Rd |only graphpcor-0.1.15/graphpcor/man/basepcor-class.Rd |only graphpcor-0.1.15/graphpcor/man/cgeneric_pc_prec_correl.Rd |only graphpcor-0.1.15/graphpcor/man/fillLprec.Rd |only graphpcor-0.1.15/graphpcor/man/graphpcor-class.Rd |only graphpcor-0.1.15/graphpcor/man/hessian.graphpcor.Rd |only graphpcor-0.1.15/graphpcor/man/treepcor-class.Rd |only graphpcor-0.1.15/graphpcor/src |only graphpcor-0.1.24/graphpcor/DESCRIPTION | 13 graphpcor-0.1.24/graphpcor/MD5 | 102 +- graphpcor-0.1.24/graphpcor/NAMESPACE | 35 graphpcor-0.1.24/graphpcor/R/Laplacian.R |only graphpcor-0.1.24/graphpcor/R/aaa.R |only graphpcor-0.1.24/graphpcor/R/basecor.R | 119 +- graphpcor-0.1.24/graphpcor/R/basecor_utils.R | 160 --- graphpcor-0.1.24/graphpcor/R/basepcor.R | 172 +-- graphpcor-0.1.24/graphpcor/R/basepcor_utils.R | 68 - graphpcor-0.1.24/graphpcor/R/cgeneric_LKJ.R | 31 graphpcor-0.1.24/graphpcor/R/cgeneric_Wishart.R | 91 -- graphpcor-0.1.24/graphpcor/R/cgeneric_graphpcor.R | 340 ++++--- graphpcor-0.1.24/graphpcor/R/cgeneric_pc_correl.R | 336 ++++--- graphpcor-0.1.24/graphpcor/R/cgeneric_treepcor.R | 12 graphpcor-0.1.24/graphpcor/R/edges.R |only graphpcor-0.1.24/graphpcor/R/graphpcor.R | 408 ++++----- graphpcor-0.1.24/graphpcor/R/internal_utils.R |only graphpcor-0.1.24/graphpcor/R/numeric_utils.R |only graphpcor-0.1.24/graphpcor/R/stan.R |only graphpcor-0.1.24/graphpcor/R/treepcor.R | 274 +++--- graphpcor-0.1.24/graphpcor/build/vignette.rds |binary graphpcor-0.1.24/graphpcor/demo/00Index | 1 graphpcor-0.1.24/graphpcor/demo/basecor.R | 32 graphpcor-0.1.24/graphpcor/demo/basepcor.R | 63 + graphpcor-0.1.24/graphpcor/demo/graphpcor.R | 17 graphpcor-0.1.24/graphpcor/demo/minimal.R | 8 graphpcor-0.1.24/graphpcor/demo/pc_correl.R | 98 +- graphpcor-0.1.24/graphpcor/demo/stan.R |only graphpcor-0.1.24/graphpcor/demo/treepcor.R | 112 +- graphpcor-0.1.24/graphpcor/inst/doc/treepcor.R | 131 ++ graphpcor-0.1.24/graphpcor/inst/doc/treepcor.Rmd | 632 +++++++++++++- graphpcor-0.1.24/graphpcor/inst/doc/treepcor.html |only graphpcor-0.1.24/graphpcor/man/Laplacian.Rd | 7 graphpcor-0.1.24/graphpcor/man/basecor-utils.Rd | 43 graphpcor-0.1.24/graphpcor/man/basecor.Rd |only graphpcor-0.1.24/graphpcor/man/basepcor-utils.Rd |only graphpcor-0.1.24/graphpcor/man/basepcor.Rd |only graphpcor-0.1.24/graphpcor/man/cgeneric_LKJ.Rd | 31 graphpcor-0.1.24/graphpcor/man/cgeneric_Wishart.Rd | 15 graphpcor-0.1.24/graphpcor/man/cgeneric_graphpcor.Rd | 105 +- graphpcor-0.1.24/graphpcor/man/cgeneric_pc_correl.Rd | 120 +- graphpcor-0.1.24/graphpcor/man/edges.Rd |only graphpcor-0.1.24/graphpcor/man/graphpcor.Rd |only graphpcor-0.1.24/graphpcor/man/internal-utils.Rd |only graphpcor-0.1.24/graphpcor/man/numeric-utils.Rd |only graphpcor-0.1.24/graphpcor/man/stan_add.Rd |only graphpcor-0.1.24/graphpcor/man/treepcor.Rd |only graphpcor-0.1.24/graphpcor/vignettes/treepcor.Rmd | 632 +++++++++++++- 62 files changed, 2681 insertions(+), 1527 deletions(-)
Title: Infrastructure for the Traveling Salesperson Problem
Description: Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP).
The package provides some simple algorithms and
an interface to the Concorde TSP solver and its implementation of the
Chained-Lin-Kernighan heuristic. The code for Concorde
itself is not included in the package and has to be obtained separately.
Hahsler and Hornik (2007) <doi:10.18637/jss.v023.i02>.
Author: Michael Hahsler [aut, cre, cph] ,
Kurt Hornik [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between TSP versions 1.2.6 dated 2025-11-27 and 1.2.7 dated 2026-03-23
DESCRIPTION | 8 +- MD5 | 30 ++++----- NEWS.md | 5 + R/TSPLIB.R | 59 +++++++++++++++---- R/solve_TSP.R | 97 +++++++++++++++++++------------- R/tsp_SA.R | 6 + README.md | 65 +++++++++++---------- inst/README_files/unnamed-chunk-6-1.png |binary inst/doc/TSP.R | 34 +++++------ inst/doc/TSP.Rnw | 9 +- inst/doc/TSP.pdf |binary man/TSPLIB.Rd | 2 man/solve_TSP.Rd | 96 ++++++++++++++++++++----------- tests/testthat/test-TSPLIB.R | 65 +++++++++++++++++++++ vignettes/TSP.Rnw | 9 +- vignettes/TSP.bib | 6 - 16 files changed, 327 insertions(+), 164 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Statistics to locate and tag peaks and valleys and to label plots
with the equation of a fitted polynomial model by ordinary least squares,
major axis, quantile and robust and resistant regression approaches. Line
and model equation for Normal mixture models. Labels for P-value,
R^2 or adjusted R^2 or information criteria for fitted models; parametric
and non-parametric correlation; ANOVA table or summary table for fitted
models as plot insets; annotations for multiple pairwise
comparisons with adjusted P-values. Model fit classes for which suitable
methods are provided by package 'broom' and 'broom.mixed' are supported as
well as user-defined wrappers on model fit functions, allowing model
selection and conditional labelling. Scales and stats to
build volcano and quadrant plots based on
outcomes, fold changes, p-values and false discovery rates.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Samer Mouksassi [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.6.3 dated 2025-11-29 and 0.7.0 dated 2026-03-23
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293 files changed, 14948 insertions(+), 13474 deletions(-)
Title: File-Backed Array for Out-of-Memory Computation
Description: Stores large arrays in files to avoid occupying large
memories. Implemented with super fast gigabyte-level multi-threaded
reading/writing via 'OpenMP'. Supports multiple non-character data
types (double, float, complex, integer, logical, and raw).
Author: Zhengjia Wang [aut, cre, cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between filearray versions 0.2.0 dated 2025-04-01 and 0.2.1 dated 2026-03-23
DESCRIPTION | 8 +++--- MD5 | 24 ++++++++++--------- NEWS.md | 7 +++++ R/RcppExports.R | 4 +++ R/methods-subset.R | 13 ++++------ build/vignette.rds |binary inst/doc/performance.html | 5 ++-- src/RcppExports.cpp | 13 ++++++++++ src/collapse.cpp | 6 +++- src/common.h | 1 src/compat.h |only src/core.cpp | 2 - src/utils.cpp | 52 +++++++++++++++++++++++++++++++++++++------ tests/testthat/test-compat.R |only 14 files changed, 101 insertions(+), 34 deletions(-)
Title: An Extension of 'Tidymodels' Supporting Offset Terms
Description: Extend the 'tidymodels' ecosystem <https://www.tidymodels.org/> to
enable the creation of predictive models with offset terms. Models with
offsets are most useful when working with count data or when fitting an
adjustment model on top of an existing model with a prior expectation.
The former situation is common in insurance where data is often weighted by
exposures. The latter is common in life insurance where industry mortality
tables are often used as a starting point for setting assumptions.
Author: Matt Heaphy [aut, cre, cph]
Maintainer: Matt Heaphy <mattrmattrs@gmail.com>
Diff between offsetreg versions 1.1.1 dated 2025-03-02 and 1.2.0 dated 2026-03-22
DESCRIPTION | 13 MD5 | 48 +-- NEWS.md | 6 R/boost_tree_data.R | 20 - R/boost_tree_offset.R | 84 +++--- R/decision_tree_data.R | 10 R/decision_tree_exposure.R | 49 ++- R/glm.R | 187 +++++++------ R/glmnet.R | 156 ++++++----- R/poisson_reg_data.R | 29 +- R/poisson_reg_offset.R | 47 ++- R/rpart.R | 180 +++++++------ R/us_deaths.R | 50 +-- R/xgboost.R | 563 ++++++++++++++++++++++-------------------- build/vignette.rds |binary inst/doc/usage.html | 23 - man/glm_offset.Rd | 13 man/glmnet_offset.Rd | 5 man/rpart_exposure.Rd | 7 man/us_deaths.Rd | 68 ++--- man/xgb_train_offset.Rd | 13 tests/testthat.R | 26 - tests/testthat/test-poisson.R | 161 ++++++++---- tests/testthat/test-rpart.R | 125 +++++---- tests/testthat/test-xgboost.R | 190 ++++++++------ 25 files changed, 1165 insertions(+), 908 deletions(-)
Title: Tools and Statistical Procedures in Plant Science
Description: The 'inti' package is part of the 'inkaverse' project for developing
different procedures and tools used in plant science and experimental designs.
The mean aim of the package is to support researchers during the planning of
experiments and data collection (tarpuy()), data analysis and graphics (yupana())
, and scientific writing.
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] ,
Maria Belen Kistner [ctb] ,
QuipoLab [ctb],
Inkaverse [cph]
Maintainer: Flavio Lozano-Isla <flozanoisla@gmail.com>
Diff between inti versions 0.6.91 dated 2026-01-10 and 0.6.92 dated 2026-03-22
DESCRIPTION | 6 +- MD5 | 20 ++++--- NEWS.md | 10 +++ R/utils.R | 28 +++++++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/apps.html | 2 inst/extdata/_extensions/scihub/ReadMe.qmd | 70 +++------------------------ inst/extdata/_extensions/scihub/analysis.qmd | 5 - inst/extdata/_extensions/scihub/article.qmd | 16 ++++++ inst/extdata/_extensions/scihub/article.zp |only inst/extdata/_extensions/scihub/scihub.proj |only 12 files changed, 70 insertions(+), 87 deletions(-)
Title: Extended Two-Way Fixed Effects
Description: Convenience functions for implementing extended two-way
fixed effect regressions a la Wooldridge (2023, 2025)
<doi:10.1093/ectj/utad016>, <doi:10.1007/s00181-025-02807-z>.
Author: Grant McDermott [aut, cre] ,
Frederic Kluser [ctb],
Ulrich Morawetz [ctb]
Maintainer: Grant McDermott <contact@grantmcdermott.com>
Diff between etwfe versions 0.6.1 dated 2026-03-16 and 0.6.2 dated 2026-03-22
DESCRIPTION | 8 - MD5 | 8 - NEWS.md | 6 + inst/doc/etwfe.html | 242 ++++++++++++++++++++++----------------------- inst/tinytest/test_etwfe.R | 18 ++- 5 files changed, 149 insertions(+), 133 deletions(-)
Title: Interact with 'Condor' from R via SSH
Description: Interact with 'Condor' from R via SSH connection. Files are first
uploaded from user machine to submitter machine, and the job is then submitted
from the submitter machine to 'Condor'. Functions are provided to submit,
list, and download 'Condor' jobs from R. 'Condor' is an open source
high-throughput computing software framework for distributed parallelization
of computationally intensive tasks.
Author: Arni Magnusson [aut, cre],
Nan Yao [aut],
Jemery Day [ctb],
Thomas Teears [ctb]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between condor versions 3.0.1 dated 2025-09-22 and 3.0.2 dated 2026-03-22
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 8 ++++++++ R/condor_download.R | 8 ++++---- 4 files changed, 19 insertions(+), 11 deletions(-)
Title: Execute and View Data Quality Checks on OMOP CDM Database
Description: Assesses data quality in Observational Medical Outcomes Partnership Common Data Model (OMOP CDM) databases. Executes data quality checks and provides an R 'shiny' application to view the results.
Author: Katy Sadowski [aut, cre],
Clair Blacketer [aut],
Maxim Moinat [aut],
Ajit Londhe [aut],
Anthony Sena [aut],
Anthony Molinaro [aut],
Frank DeFalco [aut],
Pavel Grafkin [aut]
Maintainer: Katy Sadowski <sadowski@ohdsi.org>
Diff between DataQualityDashboard versions 2.8.6 dated 2026-01-28 and 2.8.7 dated 2026-03-22
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- NEWS.md | 4 ++++ R/calculateNotApplicableStatus.R | 23 +++++++++++++++++++++-- README.md | 8 +++++++- inst/csv/OMOP_CDMv5.2_Concept_Level.csv | 4 ++-- inst/csv/OMOP_CDMv5.3_Concept_Level.csv | 4 ++-- inst/csv/OMOP_CDMv5.4_Concept_Level.csv | 4 ++-- inst/doc/AddNewCheck.html | 2 +- inst/doc/CheckStatusDefinitions.html | 2 +- inst/doc/DataQualityDashboard.html | 6 +++++- inst/doc/DataQualityDashboard.rmd | 8 ++++++++ inst/doc/DqdForCohorts.html | 2 +- inst/doc/SqlOnly.html | 2 +- inst/doc/Thresholds.html | 2 +- vignettes/DataQualityDashboard.rmd | 8 ++++++++ 16 files changed, 84 insertions(+), 35 deletions(-)
More information about DataQualityDashboard at CRAN
Permanent link
Title: Parametric Time-to-Event Analysis with Variable Incubation
Phases
Description: Fit parametric models for time-to-event data that show an initial
'incubation period', i.e., a variable delay phase where no events occur.
The delayed Weibull distribution serves as the foundational data model.
For parameter estimation, different flavours of maximum likelihood
estimation ('MLE') and the method of maximum product of spacings estimation
('MPSE') are implemented. Bootstrap confidence intervals for parameters and
significance tests in a two group setting are provided.
Author: Matthias Kuhn [aut, cre, cph]
Maintainer: Matthias Kuhn <matthias.kuhn@tu-dresden.de>
Diff between incubate versions 1.3.0 dated 2024-08-16 and 1.4.0 dated 2026-03-22
incubate-1.3.0/incubate/data/publication_examples.rda |only incubate-1.3.0/incubate/inst/scripts/MLEw_weights.RData |only incubate-1.3.0/incubate/inst/scripts/simRes_test_2023-09-08-15h24m35s.rds |only incubate-1.3.0/incubate/inst/scripts/simRes_test_OUT.rds |only incubate-1.3.0/incubate/man/minObjFunPORT.Rd |only incubate-1.3.0/incubate/man/publication_examples.Rd |only incubate-1.4.0/incubate/DESCRIPTION | 43 incubate-1.4.0/incubate/MD5 | 120 incubate-1.4.0/incubate/NAMESPACE | 6 incubate-1.4.0/incubate/NEWS.md | 24 incubate-1.4.0/incubate/R/aaa.R |only incubate-1.4.0/incubate/R/cpp11.R |only incubate-1.4.0/incubate/R/data.R | 110 incubate-1.4.0/incubate/R/delay.R | 1631 +++- incubate-1.4.0/incubate/R/delay_estimation.R | 4062 +++++++--- incubate-1.4.0/incubate/R/delay_test.R | 2263 ++++- incubate-1.4.0/incubate/R/incubate-package.R | 5 incubate-1.4.0/incubate/R/integration.R |only incubate-1.4.0/incubate/R/sysdata.rda |binary incubate-1.4.0/incubate/R/utils.R | 461 + incubate-1.4.0/incubate/R/zzz.R |only incubate-1.4.0/incubate/README.md | 45 incubate-1.4.0/incubate/build |only incubate-1.4.0/incubate/data/fatigue.rda |binary incubate-1.4.0/incubate/data/graphite.rda |only incubate-1.4.0/incubate/data/long2017.rda |only incubate-1.4.0/incubate/data/measles_sailer.rda |only incubate-1.4.0/incubate/data/pollution.rda |binary incubate-1.4.0/incubate/data/rockette.rda |only incubate-1.4.0/incubate/data/rockette74.rda |only incubate-1.4.0/incubate/data/susquehanna.rda |binary incubate-1.4.0/incubate/inst/WORDLIST |only incubate-1.4.0/incubate/inst/doc |only incubate-1.4.0/incubate/inst/scripts/gather_results.R | 421 - incubate-1.4.0/incubate/inst/scripts/simul_MLEweights.R |only incubate-1.4.0/incubate/inst/scripts/simul_bootstrap.R | 134 incubate-1.4.0/incubate/inst/scripts/simul_confint.R | 664 + incubate-1.4.0/incubate/inst/scripts/simul_estim.R |only incubate-1.4.0/incubate/inst/scripts/simul_test.R | 845 +- incubate-1.4.0/incubate/inst/scripts/test_GOF_ad_pval.R |only incubate-1.4.0/incubate/man/DelayedExponential.Rd | 24 incubate-1.4.0/incubate/man/DelayedWeibull.Rd | 30 incubate-1.4.0/incubate/man/as_percent.Rd | 2 incubate-1.4.0/incubate/man/buildControl.Rd |only incubate-1.4.0/incubate/man/buildDist.Rd |only incubate-1.4.0/incubate/man/coef.incubate_fit.Rd | 8 incubate-1.4.0/incubate/man/delay_model.Rd | 64 incubate-1.4.0/incubate/man/estimRoundingError.Rd | 8 incubate-1.4.0/incubate/man/figures/README-example_fit-1.png |binary incubate-1.4.0/incubate/man/figures/README-example_inf-1.png |binary incubate-1.4.0/incubate/man/getDist.Rd | 12 incubate-1.4.0/incubate/man/lines.incubate_fit.Rd |only incubate-1.4.0/incubate/man/logLik.incubate_fit.Rd |only incubate-1.4.0/incubate/man/long2017.Rd |only incubate-1.4.0/incubate/man/measles_sailer.Rd |only incubate-1.4.0/incubate/man/minObjFunAlt.Rd |only incubate-1.4.0/incubate/man/near.Rd |only incubate-1.4.0/incubate/man/objFunFactory.Rd | 35 incubate-1.4.0/incubate/man/plot.incubate_fit.Rd |only incubate-1.4.0/incubate/man/power_diff.Rd | 132 incubate-1.4.0/incubate/man/prepResponseVar.Rd |only incubate-1.4.0/incubate/man/rockette74.Rd |only incubate-1.4.0/incubate/man/scalePars.Rd | 2 incubate-1.4.0/incubate/man/stankovic.Rd | 6 incubate-1.4.0/incubate/man/test_GOF.Rd | 24 incubate-1.4.0/incubate/man/test_diff.Rd | 69 incubate-1.4.0/incubate/man/transform.incubate_fit.Rd | 19 incubate-1.4.0/incubate/man/update.incubate_fit.Rd | 7 incubate-1.4.0/incubate/man/w1Fint.Rd |only incubate-1.4.0/incubate/man/w2Fint.Rd |only incubate-1.4.0/incubate/man/w3FFint.Rd |only incubate-1.4.0/incubate/src |only incubate-1.4.0/incubate/tests/spelling.R |only incubate-1.4.0/incubate/tests/testthat/test-delay.R | 1028 ++ incubate-1.4.0/incubate/tests/testthat/test-delay_estimation.R | 3296 ++++++-- incubate-1.4.0/incubate/tests/testthat/test-delay_test.R | 762 + incubate-1.4.0/incubate/tests/testthat/test-utils.R | 484 + incubate-1.4.0/incubate/vignettes |only 78 files changed, 13349 insertions(+), 3497 deletions(-)
Title: Assessment Tools for Regression Models with Discrete and
Semicontinuous Outcomes
Description: Provides assessment tools for regression models with discrete and semicontinuous outcomes proposed in Yang (2021) <doi:10.1080/10618600.2021.1910042>, Yang (2024) <doi:10.1080/10618600.2024.2303336>, Yang (2024) <doi:10.1093/biomtc/ujae007>, and Yang (2026) <doi:10.1002/cjs.70046>. It calculates the double probability integral transform (DPIT) residuals. It also constructs QQ plots of residuals the ordered curve for assessing mean structures, quasi-empirical distribution function for overall assessment, and a formal goodness-of-fit test.
Author: Lu Yang [aut],
Jeonghwan Lee [cre, aut]
Maintainer: Jeonghwan Lee <lee03938@umn.edu>
Diff between assessor versions 1.1.1 dated 2025-02-16 and 1.3.0 dated 2026-03-22
assessor-1.1.1/assessor/R/2pm.R |only assessor-1.1.1/assessor/R/Ordered_curve.R |only assessor-1.1.1/assessor/R/binom.R |only assessor-1.1.1/assessor/R/discrete_resid.R |only assessor-1.1.1/assessor/R/logistic.R |only assessor-1.1.1/assessor/R/nb.R |only assessor-1.1.1/assessor/R/pois.R |only assessor-1.1.1/assessor/R/qqplot.R |only assessor-1.1.1/assessor/R/semiconti.R |only assessor-1.1.1/assessor/R/zero_resid.R |only assessor-1.1.1/assessor/R/znb.R |only assessor-1.1.1/assessor/R/zpois.R |only assessor-1.1.1/assessor/man/qqresid.Rd |only assessor-1.1.1/assessor/man/resid_2pm.Rd |only assessor-1.1.1/assessor/man/resid_disc.Rd |only assessor-1.1.1/assessor/man/resid_quasi.Rd |only assessor-1.1.1/assessor/man/resid_semiconti.Rd |only assessor-1.1.1/assessor/man/resid_zeroinfl.Rd |only assessor-1.1.1/assessor/tests |only assessor-1.3.0/assessor/DESCRIPTION | 14 - assessor-1.3.0/assessor/MD5 | 68 ++++--- assessor-1.3.0/assessor/NAMESPACE | 71 ++++++- assessor-1.3.0/assessor/R/LGPIF.R |only assessor-1.3.0/assessor/R/bballHR.R | 3 assessor-1.3.0/assessor/R/dpit_2pm.R |only assessor-1.3.0/assessor/R/dpit_binomial.R |only assessor-1.3.0/assessor/R/dpit_glm.R |only assessor-1.3.0/assessor/R/dpit_helper.R |only assessor-1.3.0/assessor/R/dpit_main.R |only assessor-1.3.0/assessor/R/dpit_nb.R |only assessor-1.3.0/assessor/R/dpit_ordinal.R |only assessor-1.3.0/assessor/R/dpit_pois.R |only assessor-1.3.0/assessor/R/dpit_tobit.R |only assessor-1.3.0/assessor/R/dpit_tweedie.R |only assessor-1.3.0/assessor/R/dpit_zeroinfl.R |only assessor-1.3.0/assessor/R/dpit_znb.R |only assessor-1.3.0/assessor/R/dpit_zpois.R |only assessor-1.3.0/assessor/R/gof_calc.R |only assessor-1.3.0/assessor/R/gof_main.R |only assessor-1.3.0/assessor/R/ord_curve.R |only assessor-1.3.0/assessor/R/quasi.R | 171 ++++++++++++++---- assessor-1.3.0/assessor/R/quasi_func.R | 226 ++++++++++++++++++------- assessor-1.3.0/assessor/data/LGPIF.rda |only assessor-1.3.0/assessor/man/LGPIF.Rd |only assessor-1.3.0/assessor/man/bballHR.Rd | 3 assessor-1.3.0/assessor/man/dpit.Rd |only assessor-1.3.0/assessor/man/dpit_2pm.Rd |only assessor-1.3.0/assessor/man/dpit_bin.Rd |only assessor-1.3.0/assessor/man/dpit_nb.Rd |only assessor-1.3.0/assessor/man/dpit_ordi.Rd |only assessor-1.3.0/assessor/man/dpit_pois.Rd |only assessor-1.3.0/assessor/man/dpit_tobit.Rd |only assessor-1.3.0/assessor/man/dpit_tweedie.Rd |only assessor-1.3.0/assessor/man/dpit_znb.Rd |only assessor-1.3.0/assessor/man/dpit_zpois.Rd |only assessor-1.3.0/assessor/man/gof_disc.Rd |only assessor-1.3.0/assessor/man/ord_curve.Rd | 12 + assessor-1.3.0/assessor/man/quasi_plot.Rd |only 58 files changed, 422 insertions(+), 146 deletions(-)
Title: Just a Rather Bayesian Evidence Synthesis
Description: Provides a new class of Bayesian meta-analysis models that incorporates a model for internal and external validity bias. In this way, it is possible to combine studies of diverse quality and different types. For example, we can combine the results of randomized control trials (RCTs) with the results of observational studies (OS).
Author: Pablo Emilio Verde [aut, cre]
Maintainer: Pablo Emilio Verde <pabloemilio.verde@hhu.de>
Diff between jarbes versions 2.4.2 dated 2026-02-11 and 2.5.0 dated 2026-03-22
jarbes-2.4.2/jarbes/man/print.bmeta.Rd |only jarbes-2.5.0/jarbes/ChangeLog | 21 + jarbes-2.5.0/jarbes/DESCRIPTION | 8 jarbes-2.5.0/jarbes/MD5 | 89 +++--- jarbes-2.5.0/jarbes/R/b3lmeta.R | 6 jarbes-2.5.0/jarbes/R/bcbnp.R | 6 jarbes-2.5.0/jarbes/R/bcbnp_0.R | 6 jarbes-2.5.0/jarbes/R/bcdpmeta.R | 7 jarbes-2.5.0/jarbes/R/bcmeta.R | 98 ++++--- jarbes-2.5.0/jarbes/R/bcmixmeta.R | 87 +++++- jarbes-2.5.0/jarbes/R/bmeta.R | 365 +++++++++++++++------------ jarbes-2.5.0/jarbes/R/data-documentation.R | 104 +++++++ jarbes-2.5.0/jarbes/R/diagnostic.bcmeta.R | 212 ++++++--------- jarbes-2.5.0/jarbes/R/diagnostic.bmeta.R | 91 ++++-- jarbes-2.5.0/jarbes/R/dpmeta.R | 18 + jarbes-2.5.0/jarbes/R/dpmetareg.R | 6 jarbes-2.5.0/jarbes/R/dpmmeta.R | 6 jarbes-2.5.0/jarbes/R/jarbes-package.R | 6 jarbes-2.5.0/jarbes/R/plot.bcmeta.R | 252 +++++++++++++----- jarbes-2.5.0/jarbes/R/plot.bcmixmeta.R | 341 +++++++++++++------------ jarbes-2.5.0/jarbes/R/plot.bmeta.R | 58 ++-- jarbes-2.5.0/jarbes/R/plot.dpmeta.R | 208 +++++++++++++-- jarbes-2.5.0/jarbes/R/plot_data.R | 277 +++++++++++++++----- jarbes-2.5.0/jarbes/R/summary.bcbnp.R | 4 jarbes-2.5.0/jarbes/R/summary.bcmeta.R | 12 jarbes-2.5.0/jarbes/R/summary.bcmixmeta.R | 4 jarbes-2.5.0/jarbes/R/summary.bmeta.R | 70 +++-- jarbes-2.5.0/jarbes/R/summary.dpmeta.R | 319 +++++++++++++++++++---- jarbes-2.5.0/jarbes/R/summary.hmr.R | 3 jarbes-2.5.0/jarbes/R/summary.metarisk.R | 3 jarbes-2.5.0/jarbes/data/ganzfeld.rda |only jarbes-2.5.0/jarbes/data/stemcells.rda |binary jarbes-2.5.0/jarbes/data/tyge_2011.rda |only jarbes-2.5.0/jarbes/man/ai_distress.Rd | 4 jarbes-2.5.0/jarbes/man/bcmeta.Rd | 33 +- jarbes-2.5.0/jarbes/man/bcmixmeta.Rd | 24 + jarbes-2.5.0/jarbes/man/bmeta.Rd | 56 +--- jarbes-2.5.0/jarbes/man/diagnostic.bcmeta.Rd | 9 jarbes-2.5.0/jarbes/man/ganzfeld.Rd |only jarbes-2.5.0/jarbes/man/plot.bcmeta.Rd | 45 ++- jarbes-2.5.0/jarbes/man/plot.bcmixmeta.Rd | 48 ++- jarbes-2.5.0/jarbes/man/plot.bmeta.Rd | 4 jarbes-2.5.0/jarbes/man/plot.dpmeta.Rd | 32 ++ jarbes-2.5.0/jarbes/man/plot_data.Rd | 47 ++- jarbes-2.5.0/jarbes/man/stemcells.Rd | 4 jarbes-2.5.0/jarbes/man/summary.bcmeta.Rd | 4 jarbes-2.5.0/jarbes/man/summary.dpmeta.Rd | 21 + jarbes-2.5.0/jarbes/man/tyge_2011.Rd |only 48 files changed, 2078 insertions(+), 940 deletions(-)
Title: Use 'QGIS' Processing Algorithms
Description: Provides seamless access to the 'QGIS'
(<https://qgis.org>) processing toolbox using the standalone
'qgis_process' command-line utility. Both native and third-party
(plugin) processing providers are supported. Beside referring data
sources from file, also common objects from 'sf', 'terra' and 'stars'
are supported. The native processing algorithms are documented by QGIS.org
(2024) <https://docs.qgis.org/latest/en/docs/user_manual/processing_algs/>.
Author: Dewey Dunnington [aut] ,
Floris Vanderhaeghe [aut, cre] ),
Jan Caha [aut] ,
Jannes Muenchow [aut] ,
Antony Barja [ctb] ,
Robin Lovelace [ctb] ,
Jakub Nowosad [ctb] ,
Research Institute for Nature and Forest [cph, fnd]
Maintainer: Floris Vanderhaeghe <floris.vanderhaeghe@inbo.be>
Diff between qgisprocess versions 0.4.1 dated 2024-10-06 and 0.4.2 dated 2026-03-22
DESCRIPTION | 46 +- MD5 | 94 ++--- NEWS.md | 4 R/compat-terra.R | 2 R/qgis-algorithms.R | 64 ++- R/qgis-arguments.R | 9 R/qgis-cache.R | 9 R/qgis-configure.R | 9 R/qgis-function.R | 42 +- R/qgis-plugins.R | 25 - R/qgis-result.R | 4 R/qgis-state.R | 36 -- R/qgisprocess-deprecated.R | 1 README.md | 26 - build/vignette.rds |binary inst/CITATION | 4 inst/doc/options.html | 2 inst/doc/qgis_arguments.R | 4 inst/doc/qgis_arguments.html | 7 inst/doc/qgis_expressions.R | 16 inst/doc/qgis_expressions.html | 9 inst/doc/qgisprocess.R | 66 +-- inst/doc/qgisprocess.html | 526 +++++++++++++------------------ man/as_qgis_argument.Rd | 2 man/qgis_algorithms.Rd | 2 man/qgis_as_raster.Rd | 2 man/qgis_as_terra.Rd | 2 man/qgis_clean_result.Rd | 2 man/qgis_enable_plugins.Rd | 2 man/qgis_extract_output.Rd | 2 man/qgis_function.Rd | 2 man/qgis_path.Rd | 2 man/qgis_result_status.Rd | 2 man/qgis_run.Rd | 2 man/qgis_run_algorithm.Rd | 2 man/qgis_run_algorithm_p.Rd | 2 man/qgis_search_algorithms.Rd | 6 man/qgis_show_help.Rd | 2 man/qgis_using_json_input.Rd | 2 man/st_as_sf.Rd | 2 man/st_as_stars.Rd | 2 tests/testthat/test-compat-terra.R | 13 tests/testthat/test-qgis-algorithms.R | 44 ++ tests/testthat/test-qgis-arguments.R | 1 tests/testthat/test-qgis-configure.R | 5 tests/testthat/test-qgis-plugins.R | 7 tests/testthat/test-qgis-run-algorithm.R | 3 tests/testthat/test-qgis-state.R | 9 48 files changed, 520 insertions(+), 607 deletions(-)
Title: Patient-Reported Outcome Data Analysis with Stan
Description: Estimation for blinding bias in randomized controlled trials with
a latent continuous outcome, a binary response depending on treatment and the
latent outcome, and a noisy surrogate subject to possibly response-dependent
measurement error. Implements EM estimators in R backed by compiled C routines
for models with and without the restriction delta0 = 0, and Bayesian Stan
wrappers for the same two models. Functions were added for latent outcome
models with differential measurement error.
Author: Bin Wang [aut, cre]
Maintainer: Bin Wang <bwang831@gmail.com>
Diff between prome versions 3.1.0.1 dated 2026-02-06 and 4.0.0.3 dated 2026-03-22
prome-3.1.0.1/prome/LICENSE |only prome-3.1.0.1/prome/R/bate.R |only prome-3.1.0.1/prome/R/blindingCPE.R |only prome-3.1.0.1/prome/R/blindingTEST.R |only prome-3.1.0.1/prome/R/crossover2x2.R |only prome-3.1.0.1/prome/R/means.R |only prome-3.1.0.1/prome/R/prome-package.R |only prome-3.1.0.1/prome/R/proportions.R |only prome-3.1.0.1/prome/R/ratio.R |only prome-3.1.0.1/prome/R/stanmodels.R |only prome-3.1.0.1/prome/R/zzz.R |only prome-3.1.0.1/prome/configure |only prome-3.1.0.1/prome/configure.win |only prome-3.1.0.1/prome/data |only prome-3.1.0.1/prome/inst/extdata/ctest.rda |only prome-3.1.0.1/prome/inst/extdata/dtest.rda |only prome-3.1.0.1/prome/inst/extdata/etest.rda |only prome-3.1.0.1/prome/inst/include |only prome-3.1.0.1/prome/inst/stan/ate.stan |only prome-3.1.0.1/prome/inst/stan/ate2m.stan |only prome-3.1.0.1/prome/inst/stan/ate4m.stan |only prome-3.1.0.1/prome/inst/stan/blindlogit.stan |only prome-3.1.0.1/prome/inst/stan/cross0.stan |only prome-3.1.0.1/prome/inst/stan/cross1.stan |only prome-3.1.0.1/prome/inst/stan/hm2mean.stan |only prome-3.1.0.1/prome/inst/stan/hmmean.stan |only prome-3.1.0.1/prome/inst/stan/include |only prome-3.1.0.1/prome/inst/stan/proportion.stan |only prome-3.1.0.1/prome/inst/stan/proportions.stan |only prome-3.1.0.1/prome/inst/stan/zate.stan |only prome-3.1.0.1/prome/man/bate.Rd |only prome-3.1.0.1/prome/man/blindingBI.Rd |only prome-3.1.0.1/prome/man/blindingcpe.Rd |only prome-3.1.0.1/prome/man/blindingdata.Rd |only prome-3.1.0.1/prome/man/blindingtest.Rd |only prome-3.1.0.1/prome/man/data100x3.Rd |only prome-3.1.0.1/prome/man/meanHM.Rd |only prome-3.1.0.1/prome/man/prome-package.Rd |only prome-3.1.0.1/prome/man/propHM.Rd |only prome-3.1.0.1/prome/man/xover.Rd |only prome-3.1.0.1/prome/src/Makevars |only prome-3.1.0.1/prome/src/Makevars.win |only prome-3.1.0.1/prome/src/RcppExports.cpp |only prome-3.1.0.1/prome/src/stanExports_lm.cc |only prome-3.1.0.1/prome/src/stanExports_lm.h |only prome-4.0.0.3/prome/DESCRIPTION | 38 +++++---- prome-4.0.0.3/prome/MD5 | 71 ++++------------- prome-4.0.0.3/prome/NAMESPACE | 31 +------ prome-4.0.0.3/prome/PORTING |only prome-4.0.0.3/prome/R/em.R |only prome-4.0.0.3/prome/R/rctme-package.R |only prome-4.0.0.3/prome/R/stan.R |only prome-4.0.0.3/prome/R/utils.R |only prome-4.0.0.3/prome/inst/extdata/rctme_sim_small.csv |only prome-4.0.0.3/prome/inst/stan/rctme_delta0_fixed.stan |only prome-4.0.0.3/prome/inst/stan/rctme_delta_free.stan |only prome-4.0.0.3/prome/man/blindingMLE.Rd |only prome-4.0.0.3/prome/man/dot-validate_inputs.Rd |only prome-4.0.0.3/prome/man/fit_rctme_em.Rd |only prome-4.0.0.3/prome/man/fit_rctme_em_delta0_fixed.Rd |only prome-4.0.0.3/prome/man/fit_rctme_stan.Rd |only prome-4.0.0.3/prome/man/fit_rctme_stan_delta0_fixed.Rd |only prome-4.0.0.3/prome/man/prome.Rd |only prome-4.0.0.3/prome/man/rctme_stan_file.Rd |only prome-4.0.0.3/prome/man/simulate_rctme_data.Rd |only prome-4.0.0.3/prome/src/rctme_em.c |only 66 files changed, 49 insertions(+), 91 deletions(-)
Title: Model Diagnostics for Accelerated Failure Time Models
Description: A collection of model checking methods for semiparametric
accelerated failure time (AFT) models under the rank-based approach. For the
(computational) efficiency, Gehan's weight is used. It provides functions to
verify whether the observed data fit the specific model assumptions such as
a functional form of each covariate, a link function, and an omnibus test.
The p-value offered in this package is based on the Kolmogorov-type supremum
test and the variance of the proposed test statistics is estimated through
the re-sampling method. Furthermore, a graphical technique to compare the
shape of the observed residual to a number of the approximated realizations
is provided. See the following references; A general model-checking
procedure for semiparametric accelerated failure time models, Statistics and
Computing, 34 (3), 117 <doi:10.1007/s11222-024-10431-7>; Diagnostics for
semiparametric accelerated failure time models with R package 'afttest',
arXiv, <doi:10.48550/arXiv.2511.098 [...truncated...]
Author: Woojung Bae [aut, cre] ,
Dongrak Choi [aut] ,
Jun Yan [aut] ,
Sangwook Kang [aut]
Maintainer: Woojung Bae <matt.woojung@gmail.com>
Diff between afttest versions 4.5.2.2 dated 2026-02-24 and 4.5.3 dated 2026-03-22
afttest-4.5.2.2/afttest/man/export_Surv.Rd |only afttest-4.5.3/afttest/DESCRIPTION | 10 afttest-4.5.3/afttest/MD5 | 26 + afttest-4.5.3/afttest/NAMESPACE | 1 afttest-4.5.3/afttest/R/afttest-package.R |only afttest-4.5.3/afttest/R/afttest.R | 263 ++++++++++--------- afttest-4.5.3/afttest/R/generic.R | 66 ++-- afttest-4.5.3/afttest/inst/examples/ex_afttest.R | 113 +++----- afttest-4.5.3/afttest/man/afttest-package.Rd |only afttest-4.5.3/afttest/man/afttest.Rd | 266 +++++--------------- afttest-4.5.3/afttest/man/afttest.aftgee.Rd |only afttest-4.5.3/afttest/man/afttest.aftsrr.Rd |only afttest-4.5.3/afttest/man/afttest.formula.Rd |only afttest-4.5.3/afttest/man/plot.afttest.Rd | 139 ++++------ afttest-4.5.3/afttest/man/print.afttest.Rd | 125 +++------ afttest-4.5.3/afttest/man/summary.afttest.Rd | 125 +++------ afttest-4.5.3/afttest/tests/testthat/test-afttest.R | 26 - 17 files changed, 485 insertions(+), 675 deletions(-)
Title: Sumerian Cuneiform Text Analysis
Description: Provides functions for converting transliterated Sumerian texts to sign names and cuneiform characters,
creating and querying dictionaries, analyzing the structure of
Sumerian words, and creating translations. Includes a built-in dictionary and supports both
forward lookup (Sumerian to English) and reverse lookup (English to
Sumerian).
Author: Robin Wellmann [aut, cre]
Maintainer: Robin Wellmann <ro.wellmann@gmail.com>
Diff between sumer versions 1.3.0 dated 2026-03-11 and 1.4.0 dated 2026-03-22
sumer-1.3.0/sumer/inst/extdata/enki_and_the_world_order.txt |only sumer-1.4.0/sumer/DESCRIPTION | 6 sumer-1.4.0/sumer/MD5 | 113 sumer-1.4.0/sumer/NAMESPACE | 4 sumer-1.4.0/sumer/R/add_brackets.R | 18 sumer-1.4.0/sumer/R/as.cuneiform.R | 75 sumer-1.4.0/sumer/R/beautify_translations.R | 38 sumer-1.4.0/sumer/R/compose_skeleton_entry.R | 12 sumer-1.4.0/sumer/R/eval_operator.R | 321 + sumer-1.4.0/sumer/R/fill_substr_info.R |only sumer-1.4.0/sumer/R/grammatical_structure.R | 51 sumer-1.4.0/sumer/R/guess_substr_info.R | 11 sumer-1.4.0/sumer/R/info.R | 228 - sumer-1.4.0/sumer/R/merge_dictionaries.R |only sumer-1.4.0/sumer/R/read_translated_text.R | 151 sumer-1.4.0/sumer/R/sign_grammar.R | 227 - sumer-1.4.0/sumer/R/skeleton.R | 161 sumer-1.4.0/sumer/R/split_sumerian.R | 26 sumer-1.4.0/sumer/R/translate.R | 2143 ++++++------ sumer-1.4.0/sumer/R/translate_line.R |only sumer-1.4.0/sumer/R/translation_context.R |only sumer-1.4.0/sumer/inst/doc/getting-started.R | 120 sumer-1.4.0/sumer/inst/doc/getting-started.Rmd | 457 +- sumer-1.4.0/sumer/inst/doc/getting-started.html | 1006 ++++- sumer-1.4.0/sumer/inst/doc/translating-texts.R | 86 sumer-1.4.0/sumer/inst/doc/translating-texts.Rmd | 321 - sumer-1.4.0/sumer/inst/doc/translating-texts.html | 802 ++-- sumer-1.4.0/sumer/inst/extdata/grammatical_structure.png |only sumer-1.4.0/sumer/inst/extdata/project |only sumer-1.4.0/sumer/man/add_brackets.Rd | 131 sumer-1.4.0/sumer/man/as.cuneiform.Rd | 146 sumer-1.4.0/sumer/man/compose_skeleton_entry.Rd | 8 sumer-1.4.0/sumer/man/fill_substr_info.Rd |only sumer-1.4.0/sumer/man/grammatical_structure.Rd | 21 sumer-1.4.0/sumer/man/guess_substr_info.Rd | 123 sumer-1.4.0/sumer/man/info.Rd | 198 - sumer-1.4.0/sumer/man/make_dictionary.Rd | 184 - sumer-1.4.0/sumer/man/mark_ngrams.Rd | 135 sumer-1.4.0/sumer/man/merge_dictionaries.Rd |only sumer-1.4.0/sumer/man/ngram_frequencies.Rd | 160 sumer-1.4.0/sumer/man/plot_sign_grammar.Rd | 3 sumer-1.4.0/sumer/man/read_translated_text.Rd | 214 - sumer-1.4.0/sumer/man/split_sumerian.Rd | 8 sumer-1.4.0/sumer/man/translate.Rd | 174 sumer-1.4.0/sumer/man/translate_line.Rd |only sumer-1.4.0/sumer/vignettes/getting-started.Rmd | 457 +- sumer-1.4.0/sumer/vignettes/translating-texts.Rmd | 321 - 47 files changed, 5157 insertions(+), 3503 deletions(-)
Title: Efficient and Publishing-Oriented Workflow for Psychological
Science
Description: The main goal of the psycho package is to provide tools for psychologists, neuropsychologists and neuroscientists,
to facilitate and speed up the time spent on data analysis. It aims at supporting best practices and tools to format the output
of statistical methods to directly paste them into a manuscript, ensuring statistical reporting standardization and conformity.
Author: Dominique Makowski [aut, cre, cph] ,
Hugo Najberg [ctb],
Viliam Simko [ctb],
Sasha Epskamp [rev]
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between psycho versions 0.6.1 dated 2021-01-19 and 0.6.2 dated 2026-03-22
DESCRIPTION | 12 - MD5 | 52 +++--- R/crawford.test.R | 99 ++++++------ R/dprime.R | 69 +++++--- R/miscellaneous.R | 4 R/psychobject.R | 6 README.md | 4 build/vignette.rds |binary inst/doc/bayesian.html | 79 ++------- inst/doc/overview.R | 20 +- inst/doc/overview.Rmd | 2 inst/doc/overview.html | 311 ++++++++++++++++++++------------------ man/affective.Rd | 52 +++--- man/assess.Rd | 144 ++++++++--------- man/crawford.test.Rd | 144 ++++++++--------- man/crawford.test.freq.Rd | 58 +++---- man/crawford_dissociation.test.Rd | 90 +++++----- man/dprime.Rd | 152 +++++++++--------- man/emotion.Rd | 58 +++---- man/find_combinations.formula.Rd | 72 ++++---- man/find_matching_string.Rd | 58 +++---- man/find_season.Rd | 86 +++++----- man/is.standardized.Rd | 64 +++---- man/mellenbergh.test.Rd | 60 +++---- man/power_analysis.Rd | 126 +++++++-------- man/summary.psychobject.Rd | 42 ++--- vignettes/overview.Rmd | 2 27 files changed, 938 insertions(+), 928 deletions(-)
Title: Large Language Model (LLM) Tools for Psychological Text Analysis
Description: A collection of large language model (LLM) text analysis methods
designed with psychological data in mind. Currently, LLMing (aka "lemming")
includes a text anomaly detection method based on the angle-based subspace
approach described by Zhang, Lin, and Karim (2015) and a text generation method.
<doi:10.1016/j.ress.2015.05.025>.
Author: Lindley Slipetz [aut, cre],
Teague Henry [aut],
Siqi Sun [ctb]
Maintainer: Lindley Slipetz <ddj6tu@virginia.edu>
Diff between LLMing versions 1.1.0 dated 2026-01-08 and 1.2.0 dated 2026-03-22
DESCRIPTION | 12 - MD5 | 22 - NAMESPACE | 26 +- NEWS.md | 4 R/embed.R | 580 +++++++++++++++++++++++++++++++++++++++++++++++----- R/text_datagen.R | 32 +- R/textanomaly.R | 52 ++-- README.md | 53 ---- build/partial.rdb |binary man/embed.Rd | 100 ++++++-- man/text_datagen.Rd | 1 man/textanomaly.Rd | 5 12 files changed, 697 insertions(+), 190 deletions(-)
Title: Exploratory Data Analysis for the 'spatstat' Family
Description: Functionality for exploratory data analysis and nonparametric analysis of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Warick Brown [cph],
Achmad Choiruddin [ctb],
Ya-Mei Chang [ctb],
Jean-Francois Coeurjolly [ctb],
Lucia Cobo Sanchez [ctb, cph],
Ottma [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.explore versions 3.7-0 dated 2026-01-22 and 3.8-0 dated 2026-03-22
DESCRIPTION | 14 MD5 | 93 - NAMESPACE | 11 NEWS | 122 ++ R/Kmulti.inhom.R | 12 R/bw.pcf.R | 4 R/coxmap.R |only R/dclftest.R | 1 R/envelope.R | 2147 ++------------------------------------- R/envelope3.R | 131 +- R/envelopeClass.R |only R/envelopeEngine.R |only R/hopskel.R | 8 R/localKcross.R | 12 R/pcf.R | 597 ++++++---- R/pcfinhom.R | 429 ++----- R/pcfmulti.R | 283 +++-- R/pcfmulti.inhom.R | 287 +++-- R/quadrattest.R | 62 - R/resolve.lambda.R | 212 ++- build/partial.rdb |binary inst/doc/packagesizes.txt | 3 inst/info/packagesizes.txt | 3 man/Kcross.inhom.Rd | 62 - man/Kdot.inhom.Rd | 48 man/Kmulti.inhom.Rd | 130 +- man/Smooth.ppp.Rd | 4 man/Tstat.Rd | 3 man/bits.test.Rd | 32 man/coxmap.Rd |only man/dclf.test.Rd | 54 man/density.ppp.Rd | 6 man/dg.test.Rd | 32 man/envelope.Rd | 56 - man/envelope.pp3.Rd | 49 man/macros/defns.Rd | 5 man/markcorr.Rd | 7 man/markcrosscorr.Rd | 7 man/pcf.ppp.Rd | 83 + man/pcfcross.Rd | 84 - man/pcfcross.inhom.Rd | 71 - man/pcfdot.Rd | 84 - man/pcfdot.inhom.Rd | 77 - man/pcfinhom.Rd | 23 man/pcfmulti.Rd | 162 +- man/pcfmulti.inhom.Rd |only man/relrisk.ppp.Rd | 2 man/spatstat.explore-internal.Rd | 28 tests/testsGtoJ.R | 2 tests/testsK.R | 23 50 files changed, 2083 insertions(+), 3482 deletions(-)
More information about spatstat.explore at CRAN
Permanent link
Title: Random Generation Functionality for the 'spatstat' Family
Description: Functionality for random generation of spatial data in the 'spatstat' family of packages.
Generates random spatial patterns of points according to many simple rules (complete spatial randomness,
Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns
(thinning, random shift, jittering), simulated realisations of random point processes including
simple sequential inhibition, Matern inhibition models, Neyman-Scott cluster processes
(using direct, Brix-Kendall, or hybrid algorithms),
log-Gaussian Cox processes, product shot noise cluster processes
and Gibbs point processes (using Metropolis-Hastings birth-death-shift algorithm,
alternating Gibbs sampler, or coupling-from-the-past perfect simulation).
Also generates random spatial patterns of line segments,
random tessellations, and random images (random noise, random mosaics).
Excludes random generation on a linear network,
which is covered by the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Tilman Davies [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb, cph],
David Bryant [ctb, cph],
Ya-Mei Chang [ctb, cph],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Dominic Sc [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.random versions 3.4-4 dated 2026-01-21 and 3.4-5 dated 2026-03-22
DESCRIPTION | 10 +- MD5 | 44 +++++----- NAMESPACE | 18 ++-- NEWS | 59 ++++++++++++++ R/clusterprocess.R | 5 - R/kraever.R | 20 ++-- R/random.R | 149 ++--------------------------------- R/randomSSI.R |only R/randomfields.R | 2 R/randommk.R | 2 R/randompp3.R | 166 +++++++++++++++++++++++++++++++++++----- R/rmhmodel.R | 2 build/partial.rdb |binary inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/clusterprocess.Rd |only man/macros/defns.Rd | 5 - man/methods.clusterprocess.Rd |only man/rSSI.Rd | 39 ++++++--- man/rpoint3.Rd |only man/rpoispp3.Rd | 26 +++++- man/runifpoint3.Rd | 11 ++ man/spatstat.random-internal.Rd | 24 ++--- src/mhsnoop.c | 47 +++++++---- tests/Random.R | 32 +++++++ 25 files changed, 414 insertions(+), 249 deletions(-)
More information about spatstat.random at CRAN
Permanent link
Title: Minimal Interface of the C++ 'MixtComp' Library for Mixture
Models with Heterogeneous and (Partially) Missing Data
Description: Mixture Composer <https://github.com/modal-inria/MixtComp> is a project to build mixture models with
heterogeneous data sets and partially missing data management.
It includes models for real, categorical, counting, functional and ranking data.
This package contains the minimal R interface of the C++ 'MixtComp' library.
Author: Vincent Kubicki [aut],
Christophe Biernacki [aut],
Quentin Grimonprez [aut, cre],
Serge Iovleff [ctb],
Matthieu Marbac-Lourdelle [ctb],
Etienne Goffinet [ctb],
Patrick Wieschollek [ctb] ,
Tobias Wood [ctb] ,
Julien Vandaele [ctb]
Maintainer: Quentin Grimonprez <quentingrim@yahoo.fr>
Diff between RMixtCompIO versions 4.0.11 dated 2023-10-03 and 4.0.12 dated 2026-03-22
DESCRIPTION | 10 MD5 | 110 +++++----- NEWS | 13 - R/RMixtCompIO-package.R | 3 man/RMixtCompIO-package.Rd | 21 + src/Makevars | 2 src/lib/Composer/ClassDataStat.cpp | 2 src/lib/Composer/ClassDataStat.h | 4 src/lib/Composer/ClassSampler.cpp | 2 src/lib/Composer/ClassSampler.h | 6 src/lib/Data/AugmentedData.h | 11 - src/lib/Data/ConfIntDataStat.h | 2 src/lib/IO/IO.h | 3 src/lib/IO/MisValParser.h | 2 src/lib/LinAlg/ConstIterator.h | 6 src/lib/LinAlg/Iterator.h | 7 src/lib/Mixture/Functional/FuncCSComputation.cpp | 5 src/lib/Mixture/Functional/FunctionCS.h | 2 src/lib/Mixture/Functional/FunctionCSParser.cpp | 2 src/lib/Mixture/IMixture.h | 39 ++- src/lib/Mixture/Rank/RankISRIndividual.h | 8 src/lib/Mixture/Rank/RankISRParser.cpp | 6 src/lib/Mixture/Rank/RankISRStat.h | 4 src/lib/Mixture/Simple/Gaussian/Gaussian.cpp | 7 src/lib/Mixture/Simple/Gaussian/Gaussian.h | 7 src/lib/Mixture/Simple/Gaussian/GaussianLikelihood.cpp | 4 src/lib/Mixture/Simple/Gaussian/GaussianLikelihood.h | 4 src/lib/Mixture/Simple/Gaussian/GaussianSampler.h | 6 src/lib/Mixture/Simple/Multinomial/MultinomialDataStat.h | 2 src/lib/Mixture/Simple/Multinomial/MultinomialLikelihood.h | 4 src/lib/Mixture/Simple/Multinomial/MultinomialSampler.cpp | 2 src/lib/Mixture/Simple/Multinomial/MultinomialSampler.h | 6 src/lib/Mixture/Simple/NegativeBinomial/NegativeBinomial.h | 4 src/lib/Mixture/Simple/NegativeBinomial/NegativeBinomialLikelihood.cpp | 4 src/lib/Mixture/Simple/NegativeBinomial/NegativeBinomialLikelihood.h | 2 src/lib/Mixture/Simple/NegativeBinomial/NegativeBinomialSampler.h | 4 src/lib/Mixture/Simple/NegativeBinomial/NegativeBinomialStatistic.h | 4 src/lib/Mixture/Simple/Poisson/Poisson.cpp | 6 src/lib/Mixture/Simple/Poisson/Poisson.h | 4 src/lib/Mixture/Simple/Poisson/PoissonLikelihood.cpp | 4 src/lib/Mixture/Simple/Poisson/PoissonLikelihood.h | 4 src/lib/Mixture/Simple/Poisson/PoissonSampler.h | 4 src/lib/Mixture/Simple/Poisson/PoissonStatistic.h | 5 src/lib/Mixture/Simple/Weibull/Weibull.cpp | 6 src/lib/Mixture/Simple/Weibull/Weibull.h | 6 src/lib/Mixture/Simple/Weibull/WeibullStatistic.h | 3 src/lib/Run/Learn.h | 1 src/lib/Run/Predict.h | 3 src/lib/Statistic/ExponentialStatistic.h | 2 src/lib/Statistic/GaussianStatistic.h | 2 src/lib/Statistic/MultinomialStatistic.h | 7 src/lib/Statistic/UniformStatistic.h | 2 src/lib/Strategy/GibbsStrategy.h | 4 src/lib/Strategy/SEMStrategy.h | 5 src/lib/Various/Constants.h | 2 src/lib/Various/Various.cpp | 2 56 files changed, 239 insertions(+), 163 deletions(-)
Title: Download and Tidy Data from the Australian Prudential Regulation
Authority
Description: Download the latest data from the Australian Prudential Regulation
Authority <https://www.apra.gov.au/> and import it into R as a tidy data
frame.
Author: Jarrod van der Wal [aut, cre, cph]
Maintainer: Jarrod van der Wal <jarvanderwal@gmail.com>
Diff between readapra versions 0.2.1 dated 2025-02-22 and 0.2.2 dated 2026-03-22
DESCRIPTION | 13 +-- MD5 | 32 ++++---- NEWS.md | 4 + R/download_apra.R | 134 +++++++++++++++++++++--------------- R/read_adipops.R | 11 ++ R/read_madis.R | 8 ++ R/read_qadicp.R | 9 ++ R/readapra_package.R | 3 R/test_wrappers.R | 12 --- R/url_selector.R | 2 man/apra_stat_pubs.Rd | 44 +++++------ man/download_apra.Rd | 106 ++++++++++++++-------------- man/figures/README-plot_madis-1.png |binary man/read_apra.Rd | 110 ++++++++++++++--------------- man/read_apra_local.Rd | 98 +++++++++++++------------- man/readapra-package.Rd | 46 ++++++------ tests/testthat/test-download_apra.R | 61 ++-------------- 17 files changed, 351 insertions(+), 342 deletions(-)
Title: Analyzing and Visualizing Multidimensional Plant Traits
Description: Implements analytical methods for multidimensional plant traits, including Competitors-Stress tolerators-Ruderals strategy analysis using leaf traits, Leaf-Height-Seed strategy analysis, Niche Periodicity Table analysis, and Trait Network analysis. Provides functions for data analysis, visualization, and network metrics calculation. Methods are based on He et al. (2026) <doi:10.1002/ecog.08026>.
Author: Yan He [aut, cre],
Zhaogang Liu [aut],
Jiangshan Lai [aut],
Lingfeng Mao [aut]
Maintainer: Yan He <heyan@njfu.edu.cn>
Diff between MultiTraits versions 0.6.0 dated 2025-10-01 and 1.0.0 dated 2026-03-22
DESCRIPTION | 12 MD5 | 50 ++- NAMESPACE | 17 + NEWS.md | 14 R/LHS_strategy_scheme.R | 16 - R/NPT_discrete_plot.R | 4 R/PTMN.R |only R/PTMN_metrics.R |only R/PTMN_plot.R |only R/average_interlayer_clustering_coefficient.R |only R/average_interlayer_path_length.R |only R/cross_layer_groups.R |only R/crosslayer_module_assoc.R |only R/forest_invader_traits.R |only R/forest_invader_tree.R |only R/interlayer_closeness.R |only R/interlayer_clustering_coefficient.R |only R/interlayer_degree.R |only R/interlayer_edge_density.R |only README.md | 114 +++++-- build/partial.rdb |only data/forest_invader_traits.rda |only data/forest_invader_tree.rda |only inst/doc/MultiTraits_tutorial.R | 45 ++ inst/doc/MultiTraits_tutorial.Rmd | 99 ++++-- inst/doc/MultiTraits_tutorial.html | 355 ++++++++++++++++++----- man/PTMN.Rd |only man/PTMN_metrics.Rd |only man/PTMN_plot.Rd |only man/average_interlayer_clustering_coefficient.Rd |only man/average_interlayer_path_length.Rd |only man/cross_layer_groups.Rd |only man/crosslayer_module_assoc.Rd |only man/figures/6.jpg |only man/forest_invader_traits.Rd |only man/forest_invader_tree.Rd |only man/interlayer_closeness.Rd |only man/interlayer_clustering_coefficient.Rd |only man/interlayer_degree.Rd |only man/interlayer_edge_density.Rd |only vignettes/MultiTraits_tutorial.Rmd | 99 ++++-- 41 files changed, 661 insertions(+), 164 deletions(-)
Title: Cross-Platform File System Operations Based on 'libuv'
Description: A cross-platform interface to file system operations, built
on top of the 'libuv' C library.
Author: Jim Hester [aut],
Hadley Wickham [aut],
Gabor Csardi [aut],
Jeroen Ooms [cre],
libuv project contributors [cph] ,
Joyent, Inc. and other Node contributors [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between fs versions 1.6.7 dated 2026-03-06 and 2.0.0 dated 2026-03-22
fs-1.6.7/fs/src/Makevars |only fs-1.6.7/fs/src/libuv-1.44.2 |only fs-2.0.0/fs/DESCRIPTION | 11 - fs-2.0.0/fs/MD5 | 350 +------------------------------------ fs-2.0.0/fs/NEWS.md | 8 fs-2.0.0/fs/build/vignette.rds |binary fs-2.0.0/fs/cleanup | 5 fs-2.0.0/fs/configure |only fs-2.0.0/fs/src/Makevars.in |only fs-2.0.0/fs/src/Makevars.vendor |only fs-2.0.0/fs/src/Makevars.win | 38 +--- fs-2.0.0/fs/src/windows/getmode.cc | 1 fs-2.0.0/fs/tools |only 13 files changed, 39 insertions(+), 374 deletions(-)
Title: High Performance Container Data Types
Description: Provides high performance container data types such
as queues, stacks, deques, dicts and ordered dicts. Benchmarks
<https://randy3k.github.io/collections/articles/benchmark.html> have
shown that these containers are asymptotically more efficient than
those offered by other packages.
Author: Randy Lai [aut, cre],
Andrea Mazzoleni [cph] ,
Yann Collet [cph]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between collections versions 0.3.11 dated 2026-02-05 and 0.3.12 dated 2026-03-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/dict.c | 2 +- src/utils.c | 2 +- src/utils.h | 9 +++++++++ 5 files changed, 19 insertions(+), 10 deletions(-)
Title: Fast Generators and Iterators for Permutations, Combinations,
Integer Partitions and Compositions
Description: Fast generators and iterators for permutations, combinations,
integer partitions and compositions. The arrangements are in
lexicographical order and generated iteratively in a memory efficient manner.
It has been demonstrated that 'arrangements' outperforms most existing
packages of similar kind. Benchmarks could be found at
<https://randy3k.github.io/arrangements/articles/benchmark.html>.
Author: Randy Lai [aut, cre]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between arrangements versions 1.1.9 dated 2020-09-13 and 1.1.10 dated 2026-03-22
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- README.md | 6 +++--- man/arrangements-package.Rd | 2 +- src/macros.h | 25 ++++++++++++++++--------- src/utils.c | 17 ++++++++++++++--- 6 files changed, 45 insertions(+), 27 deletions(-)
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: Functions to accompany A. Gelman and J. Hill, Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge University Press, 2007.
Author: Andrew Gelman [aut],
Yu-Sung Su [aut, cre] ,
Masanao Yajima [ctb],
Jennifer Hill [ctb],
Maria Grazia Pittau [ctb],
Jouni Kerman [ctb],
Tian Zheng [ctb],
Vincent Dorie [ctb]
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>
Diff between arm versions 1.15-1 dated 2026-03-15 and 1.15-2 dated 2026-03-22
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/rescale.R | 15 +++------------ 4 files changed, 14 insertions(+), 19 deletions(-)
Title: Transport Modeling: Network Processing, Route Enumeration, and
Traffic Assignment
Description: High-performance tools for transport modeling - network processing, route
enumeration, and traffic assignment in R. The package implements the Path-Sized Logit
model for traffic assignment - Ben-Akiva and Bierlaire (1999) <doi:10.1007/978-1-4615-5203-1_2> -
an efficient route enumeration algorithm, and provides powerful utility functions for (multimodal)
network generation, consolidation/contraction, and/or simplification. The user is expected to provide
a transport network (either a graph or collection of linestrings) and an origin-destination (OD)
matrix of trade/traffic flows. Maintained by transport consultants at CPCS (cpcs.ca).
Author: Sebastian Krantz [aut, cre],
Kamol Roy [ctb]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between flownet versions 0.2.1 dated 2026-02-22 and 0.2.2 dated 2026-03-22
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NAMESPACE | 2 +- NEWS.md | 6 ++++++ R/assignment.R | 7 ++----- R/utils.R | 4 ++-- inst/doc/introduction.html | 4 ++-- 7 files changed, 22 insertions(+), 19 deletions(-)
Title: Event/Timeline Prediction Model Based on Piecewise Exponential
Description: Efficient algorithm for estimating piecewise exponential hazard models for right-censored data, and is useful for reliable power calculation, study design, and event/timeline prediction for study monitoring.
Author: Tianchen Xu [aut, cre]
Maintainer: Tianchen Xu <zjph602xutianchen@gmail.com>
Diff between PwePred versions 1.0.0 dated 2025-04-10 and 1.1.0 dated 2026-03-21
DESCRIPTION | 8 +-- MD5 | 29 +++++------ NAMESPACE | 13 ++++ R/acc.R | 116 ++++++++++++++++++++++++++++++++++++++++++++ R/fitting.R | 3 - R/plot_fun.R | 16 +++--- R/sim_followup_fun.R | 1 inst/NEWS.Rd | 12 ++++ inst/doc/Theory_Notes.html | 9 +-- man/boot_fit_pwexpm_surv.Rd | 3 - man/coef.Rd |only man/fit_pwexpm_surv.Rd | 4 - man/plot_event.Rd | 11 +++- man/plot_km.Rd | 13 +++- man/predict.Rd | 6 +- man/sim_followup.Rd | 32 ++++++------ 16 files changed, 219 insertions(+), 57 deletions(-)
Title: A Blazing Fast Implementation of Random Forest
Description: Yet another implementation of the Random Forest method by Breiman (2001) <doi:10.1023/A:1010933404324>, written in Rust and tailored towards stability, correctness, efficiency and scalability on modern multi-core machines.
Handles both classification and regression, as well as provides permutation feature importance via a novel, highly optimised algorithm.
Author: Miron Bartosz Kursa [aut, cre] ,
Krzysztof Piotr Piwonski [aut]
Maintainer: Miron Bartosz Kursa <m@mbq.me>
Diff between fru versions 0.0.3 dated 2026-02-05 and 0.0.4 dated 2026-03-21
DESCRIPTION | 6 - MD5 | 29 +++-- R/a.R | 1 inst |only src/Makevars.win | 3 src/fru/src/classification.rs | 43 ++++++++ src/fru/src/classification/impurity.rs | 141 ++++++++++++++++------------ src/fru/src/lib.rs | 3 src/fru/src/regression.rs | 47 ++++++++- src/fru/src/regression/impurity.rs | 99 +++++++++++++------ src/fru/src/regression/votes.rs | 8 - src/fru/src/tools.rs |only src/fru/vendor.tar.xz |only src/wrapper.c | 2 src/xrf/Cargo.lock | 2 src/xrf/Cargo.toml | 2 src/xrf/src/forest/importance_aggregator.rs | 21 +++- 17 files changed, 285 insertions(+), 122 deletions(-)
Title: Genotype Calling with Uncertainty from Sequencing Data in
Polyploids and Diploids
Description: Read depth data from genotyping-by-sequencing (GBS) or restriction
site-associated DNA sequencing (RAD-seq) are imported and used to make Bayesian
probability estimates of genotypes in polyploids or diploids. The genotype
probabilities, posterior mean genotypes, or most probable genotypes can then
be exported for downstream analysis. 'polyRAD' is described by Clark et al.
(2019) <doi:10.1534/g3.118.200913>, and the Hind/He statistic for marker
filtering is described by Clark et al. (2022) <doi:10.1186/s12859-022-04635-9>.
A variant calling pipeline for highly duplicated genomes is also included and
is described by Clark et al. (2020, Version 1) <doi:10.1101/2020.01.11.902890>.
Author: Lindsay V. Clark [aut, cre] ,
U.S. National Science Foundation [fnd]
Maintainer: Lindsay V. Clark <Lindsay.Clark@seattlechildrens.org>
Diff between polyRAD versions 2.0.0 dated 2022-11-06 and 2.0.1 dated 2026-03-21
DESCRIPTION | 13 MD5 | 36 +- NEWS.md | 9 R/classes_methods.R | 9 R/data_export.R | 2 R/data_import.R | 45 ++- R/overdispersion.R | 3 build/partial.rdb |binary build/vignette.rds |binary inst/doc/isolocus_sorting.R | 42 +- inst/doc/isolocus_sorting.html | 101 +++---- inst/doc/polyRADtutorial.R | 206 +++++++------- inst/doc/polyRADtutorial.Rmd | 2 inst/doc/polyRADtutorial.html | 577 ++++++++++++++++++++--------------------- inst/python/process_isoloci.py | 3 man/LocusInfo.Rd | 2 man/VCF2RADdata.Rd | 3 man/readStacks.Rd | 7 vignettes/polyRADtutorial.Rmd | 2 19 files changed, 549 insertions(+), 513 deletions(-)
Title: Inference for Maximin Effects in High-Dimensional Settings
Description: Implementation of the sampling and aggregation method for the covariate shift maximin effect, which was proposed in <doi:10.48550/arXiv.2011.07568>. It constructs the confidence interval for any linear combination of the high-dimensional maximin effect.
Author: Zhenyu Wang [aut, cre],
Zijian Guo [aut]
Maintainer: Zhenyu Wang <zw425@stat.rutgers.edu>
Diff between MaximinInfer versions 2.0.0 dated 2023-04-12 and 2.1.0 dated 2026-03-21
DESCRIPTION | 18 ++++++++++-------- MD5 | 4 ++-- R/utils.R | 9 ++++----- 3 files changed, 16 insertions(+), 15 deletions(-)
Title: R Bindings for 'ZeroMQ'
Description: Interface to the 'ZeroMQ' lightweight messaging kernel (see <https://zeromq.org/> for more information).
Author: Whit Armstrong [aut],
Michael Schubert [ctb],
Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between rzmq versions 0.9.15 dated 2024-12-16 and 0.9.16 dated 2026-03-21
DESCRIPTION | 9 ++++----- MD5 | 4 ++-- src/interface.cpp | 21 --------------------- 3 files changed, 6 insertions(+), 28 deletions(-)
Title: Visualization and Analysis of Nominal Variable Distributions
Description: Provides tools for visualizing and analyzing the shape of discrete nominal frequency distributions. The package introduces centered frequency plots, in which nominal categories are ordered from the most frequent category at the center toward less frequent categories on both sides, facilitating the detection of distributional patterns such as uniformity, dominance, symmetry, skewness, and long-tail behavior. In addition, the package supports Pareto charts for the study of dominance and cumulative frequency structure in nominal data. The package is designed for exploratory data analysis and statistical teaching, offering visualizations that emphasize distributional form rather than arbitrary category ordering.
Author: Norberto Asensio [aut, cre]
Maintainer: Norberto Asensio <norberto.asensio@ehu.eus>
Diff between nomiShape versions 1.0.1 dated 2026-02-24 and 1.0.2 dated 2026-03-21
nomiShape-1.0.1/nomiShape/R/sysdata.rda |only nomiShape-1.0.2/nomiShape/DESCRIPTION | 6 nomiShape-1.0.2/nomiShape/MD5 | 37 - nomiShape-1.0.2/nomiShape/NAMESPACE | 7 nomiShape-1.0.2/nomiShape/NEWS.md | 13 nomiShape-1.0.2/nomiShape/R/data.R | 45 + nomiShape-1.0.2/nomiShape/R/rare_plot.R |only nomiShape-1.0.2/nomiShape/R/zipf_rank_plot.R |only nomiShape-1.0.2/nomiShape/build/vignette.rds |binary nomiShape-1.0.2/nomiShape/data/alice.rda |only nomiShape-1.0.2/nomiShape/data/kafka.rda |only nomiShape-1.0.2/nomiShape/inst/doc/nominal_distribution_shapes.R | 75 +- nomiShape-1.0.2/nomiShape/inst/doc/nominal_distribution_shapes.Rmd | 128 ++- nomiShape-1.0.2/nomiShape/inst/doc/nominal_distribution_shapes.html | 326 ++++++---- nomiShape-1.0.2/nomiShape/inst/doc/rare_plot.R |only nomiShape-1.0.2/nomiShape/inst/doc/rare_plot.Rmd |only nomiShape-1.0.2/nomiShape/inst/doc/rare_plot.html |only nomiShape-1.0.2/nomiShape/inst/doc/zipf_rank_plot.R |only nomiShape-1.0.2/nomiShape/inst/doc/zipf_rank_plot.Rmd |only nomiShape-1.0.2/nomiShape/inst/doc/zipf_rank_plot.html |only nomiShape-1.0.2/nomiShape/man/alice.Rd |only nomiShape-1.0.2/nomiShape/man/kafka.Rd |only nomiShape-1.0.2/nomiShape/man/rare_plot.Rd |only nomiShape-1.0.2/nomiShape/man/ufo.Rd | 22 nomiShape-1.0.2/nomiShape/man/zipf_rank_plot.Rd |only nomiShape-1.0.2/nomiShape/vignettes/nominal_distribution_shapes.Rmd | 128 ++- nomiShape-1.0.2/nomiShape/vignettes/rare_plot.Rmd |only nomiShape-1.0.2/nomiShape/vignettes/zipf_rank_plot.Rmd |only 28 files changed, 548 insertions(+), 239 deletions(-)
Title: Vector Helpers
Description: Defines new notions of prototype and size that are used to
provide tools for consistent and well-founded type-coercion and
size-recycling, and are in turn connected to ideas of type- and
size-stability useful for analysing function interfaces.
Author: Hadley Wickham [aut],
Lionel Henry [aut],
Davis Vaughan [aut, cre],
data.table team [cph] and
their contribution to R's order),
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between vctrs versions 0.7.1 dated 2026-01-23 and 0.7.2 dated 2026-03-21
vctrs-0.7.1/vctrs/R/translate.R |only vctrs-0.7.1/vctrs/src/translate.c |only vctrs-0.7.1/vctrs/src/translate.h |only vctrs-0.7.1/vctrs/tests/testthat/test-translate.R |only vctrs-0.7.2/vctrs/DESCRIPTION | 6 vctrs-0.7.2/vctrs/MD5 | 177 +++---- vctrs-0.7.2/vctrs/NEWS.md | 36 + vctrs-0.7.2/vctrs/R/encoding.R |only vctrs-0.7.2/vctrs/R/equal.R | 8 vctrs-0.7.2/vctrs/inst/doc/stability.html | 4 vctrs-0.7.2/vctrs/inst/doc/type-size.html | 9 vctrs-0.7.2/vctrs/man/vec_equal.Rd | 5 vctrs-0.7.2/vctrs/src/altrep.c | 1 vctrs-0.7.2/vctrs/src/arg-counter.c | 6 vctrs-0.7.2/vctrs/src/assert.c | 16 vctrs-0.7.2/vctrs/src/bind.c | 19 vctrs-0.7.2/vctrs/src/cast-bare.c | 1 vctrs-0.7.2/vctrs/src/cast.c | 21 vctrs-0.7.2/vctrs/src/compare.c | 4 vctrs-0.7.2/vctrs/src/compare.h | 2 vctrs-0.7.2/vctrs/src/complete.c | 1 vctrs-0.7.2/vctrs/src/decl/encoding-decl.h |only vctrs-0.7.2/vctrs/src/decl/equal-decl.h |only vctrs-0.7.2/vctrs/src/decl/hash-decl.h | 3 vctrs-0.7.2/vctrs/src/decl/type-data-frame-decl.h | 3 vctrs-0.7.2/vctrs/src/dictionary.c | 20 vctrs-0.7.2/vctrs/src/dim.h | 2 vctrs-0.7.2/vctrs/src/encoding.c |only vctrs-0.7.2/vctrs/src/encoding.h |only vctrs-0.7.2/vctrs/src/equal.c | 364 +++++++++------- vctrs-0.7.2/vctrs/src/equal.h | 10 vctrs-0.7.2/vctrs/src/globals.h | 1 vctrs-0.7.2/vctrs/src/group.c | 6 vctrs-0.7.2/vctrs/src/hash.c | 23 - vctrs-0.7.2/vctrs/src/if-else.c | 6 vctrs-0.7.2/vctrs/src/init.c | 12 vctrs-0.7.2/vctrs/src/interval.c | 16 vctrs-0.7.2/vctrs/src/lazy.h | 1 vctrs-0.7.2/vctrs/src/list-combine.c | 10 vctrs-0.7.2/vctrs/src/match-compare.h | 1 vctrs-0.7.2/vctrs/src/match-joint.c | 4 vctrs-0.7.2/vctrs/src/names.c | 18 vctrs-0.7.2/vctrs/src/names.h | 2 vctrs-0.7.2/vctrs/src/order-collate.h | 4 vctrs-0.7.2/vctrs/src/order.c | 8 vctrs-0.7.2/vctrs/src/order.h | 1 vctrs-0.7.2/vctrs/src/proxy-restore.c | 173 ++++--- vctrs-0.7.2/vctrs/src/ptype.c | 6 vctrs-0.7.2/vctrs/src/ptype2-dispatch.c | 1 vctrs-0.7.2/vctrs/src/rep.h | 2 vctrs-0.7.2/vctrs/src/rlang/attrib.c | 125 ----- vctrs-0.7.2/vctrs/src/rlang/attrib.h | 56 +- vctrs-0.7.2/vctrs/src/rlang/cnd.c | 2 vctrs-0.7.2/vctrs/src/rlang/debug.c | 2 vctrs-0.7.2/vctrs/src/rlang/decl/env-binding-decl.h |only vctrs-0.7.2/vctrs/src/rlang/decl/env-decl.h | 7 vctrs-0.7.2/vctrs/src/rlang/decl/walk-decl.h | 2 vctrs-0.7.2/vctrs/src/rlang/dyn-array.c | 8 vctrs-0.7.2/vctrs/src/rlang/env-binding.c | 242 +++++++++- vctrs-0.7.2/vctrs/src/rlang/env-binding.h | 50 +- vctrs-0.7.2/vctrs/src/rlang/env.c | 112 ++-- vctrs-0.7.2/vctrs/src/rlang/env.h | 81 --- vctrs-0.7.2/vctrs/src/rlang/eval.c | 48 +- vctrs-0.7.2/vctrs/src/rlang/formula.c | 6 vctrs-0.7.2/vctrs/src/rlang/obj.c | 5 vctrs-0.7.2/vctrs/src/rlang/obj.h | 8 vctrs-0.7.2/vctrs/src/rlang/rlang-types.h | 71 +++ vctrs-0.7.2/vctrs/src/rlang/walk.c | 28 - vctrs-0.7.2/vctrs/src/runs.c | 2 vctrs-0.7.2/vctrs/src/set.c | 16 vctrs-0.7.2/vctrs/src/shape.c | 35 + vctrs-0.7.2/vctrs/src/size-common.c | 9 vctrs-0.7.2/vctrs/src/size.c | 26 - vctrs-0.7.2/vctrs/src/slice-assign.c | 4 vctrs-0.7.2/vctrs/src/slice-assign.h | 1 vctrs-0.7.2/vctrs/src/slice-chop.c | 8 vctrs-0.7.2/vctrs/src/slice.c | 25 - vctrs-0.7.2/vctrs/src/subscript-loc.h | 1 vctrs-0.7.2/vctrs/src/type-complex.h | 3 vctrs-0.7.2/vctrs/src/type-data-frame.c | 115 ++--- vctrs-0.7.2/vctrs/src/type-date-time.c | 8 vctrs-0.7.2/vctrs/src/type-factor.c | 4 vctrs-0.7.2/vctrs/src/type-factor.h | 1 vctrs-0.7.2/vctrs/src/type-tibble.h | 1 vctrs-0.7.2/vctrs/src/utils.c | 52 +- vctrs-0.7.2/vctrs/src/utils.h | 3 vctrs-0.7.2/vctrs/src/vctrs-core.h | 8 vctrs-0.7.2/vctrs/src/vctrs.h | 104 ++-- vctrs-0.7.2/vctrs/src/version.c | 2 vctrs-0.7.2/vctrs/tests/testthat/helper-encoding.R | 8 vctrs-0.7.2/vctrs/tests/testthat/test-encoding.R |only vctrs-0.7.2/vctrs/tests/testthat/test-equal.R | 81 +++ vctrs-0.7.2/vctrs/tests/testthat/test-hash.R | 21 vctrs-0.7.2/vctrs/tests/testthat/test-proxy-restore.R | 154 ++++++ vctrs-0.7.2/vctrs/tests/testthat/test-type-data-frame.R | 10 95 files changed, 1577 insertions(+), 991 deletions(-)
Title: Descriptive, Reliability, and Inferential Tables for
Psychometric Scales and Demographic Data
Description: Provides functions to format and summarise already computed outputs from commonly used statistical and psychometric functions into compact, single-row tables and simple graphs, with utilities to export results to CSV, Word, and Excel formats. The package does not implement new statistical methods or estimation procedures; instead, it organises and presents results obtained from existing functions such as psych::describe(), psych::alpha(), stats::t.test(), and gtsummary::tbl_summary() to streamline reporting workflows in clinical and psychological research.
Author: Darshankumar Dharaiya [aut, cre]
Maintainer: Darshankumar Dharaiya <dharaiya.darshan@gmail.com>
Diff between scaledescr versions 0.2.2 dated 2026-03-13 and 0.2.3 dated 2026-03-21
DESCRIPTION | 6 - MD5 | 32 +++++--- NAMESPACE | 6 + NEWS.md | 14 ++- R/compute_ICC.R |only R/make_alpha_table.R | 5 + R/make_alphanumeric_conversion.R |only R/make_chisq_test_table.R | 123 ++++++++++++++++++++++---------- R/make_independent_t_test_table.R | 2 R/make_one_sample_t_test_table.R |only R/make_reverse_score.R |only R/make_scale_description_table.R | 134 +++++++++++++++++------------------ R/make_scale_total.R |only inst/CITATION | 4 - man/compute_ICC.Rd |only man/make_alphanumeric_conversion.Rd |only man/make_chisq_test_table.Rd | 11 +- man/make_independent_t_test_table.Rd | 2 man/make_one_sample_t_test_table.Rd |only man/make_reverse_score.Rd |only man/make_scale_description_table.Rd | 42 ++++------ man/make_scale_total.Rd |only 22 files changed, 225 insertions(+), 156 deletions(-)
Title: Regression with Functional Data
Description: Methods for regression for functional
data, including function-on-scalar, scalar-on-function, and
function-on-function regression. Some of the functions are applicable to
image data.
Author: Jeff Goldsmith [aut],
Fabian Scheipl [aut],
Lei Huang [aut],
Julia Wrobel [aut, cre, cph],
Chongzhi Di [aut],
Jonathan Gellar [aut],
Jaroslaw Harezlak [aut],
Mathew W. McLean [aut],
Bruce Swihart [aut],
Luo Xiao [aut],
Ciprian Crainiceanu [aut],
Phil [...truncated...]
Maintainer: Julia Wrobel <julia.wrobel@emory.edu>
Diff between refund versions 0.1-38 dated 2025-11-17 and 0.1-40 dated 2026-03-21
DESCRIPTION | 45 MD5 | 198 ++ NAMESPACE | 12 R/GLS_CS.R | 169 +- R/Gibbs_CS_FPCA.R | 297 ++-- R/Gibbs_CS_Wish.R | 147 +- R/Gibbs_Mult_FPCA.R | 344 ++--- R/Gibbs_Mult_Wish.R | 226 ++- R/OLS_CS.R | 117 + R/VB_CS_FPCA.R | 424 ++++-- R/VB_CS_Wish.R | 272 ++- R/VB_Mult_FPCA.R | 366 +++-- R/VB_Mult_Wish.R | 314 +++- R/bayes_fosr.R | 106 - R/fosr.R | 584 ++++---- R/peer.R | 102 - R/pffr-core.R |only R/pffr-ff.R | 261 +-- R/pffr-ffpc.R | 310 ++-- R/pffr-formula.R |only R/pffr-methods.R | 1693 ++++++++++++++++++------ R/pffr-robust.R | 1811 +++++++++++++------------- R/pffr-sff.R | 160 +- R/pffr-simulate.R |only R/pffr-utilities.R | 2328 +++++++++++++++++++++++++++++----- R/pffr.R | 851 ++---------- R/re.R | 19 build |only man/apply_sandwich_correction.Rd |only man/assemble_cluster_sandwich.Rd |only man/bayes_fosr.Rd | 24 man/build_cl2_working_gaulss.Rd |only man/build_cl2_working_standard.Rd |only man/build_cluster_id.Rd |only man/build_coef_axes.Rd |only man/build_coef_linear_map.Rd |only man/build_limits_function.Rd |only man/build_mgcv_data.Rd |only man/build_mgcv_formula.Rd |only man/center_concurrent_covariate.Rd |only man/center_ff_beta.Rd |only man/center_functional_covariate.Rd |only man/center_smooth_effect.Rd |only man/coef.pffr.Rd | 62 man/coef_get_predictions.Rd |only man/coef_make_data_grid.Rd |only man/coef_safe_range.Rd |only man/coefboot.pffr.Rd | 19 man/compute_ci_critical.Rd |only man/compute_coef_se.Rd |only man/compute_concurrent_effect.Rd |only man/compute_const_effect.Rd |only man/compute_ff_effect.Rd |only man/compute_gaulss_scores.Rd |only man/compute_integration_weights.Rd |only man/compute_integration_windows.Rd |only man/compute_intercept.Rd |only man/compute_linear_effect.Rd |only man/compute_smooth_effect.Rd |only man/concurrent_presets.Rd |only man/const_presets.Rd |only man/create_shortlabels.Rd |only man/draw_coef_perturbations.Rd |only man/ensure_grid_axis_attributes.Rd |only man/eval_bs.Rd |only man/expand_windows_to_maxwidth.Rd |only man/ff_presets.Rd |only man/finalize_grid_by_var.Rd |only man/fosr.Rd | 2 man/gam_sandwich_cluster.Rd |only man/gam_sandwich_cluster_cl2.Rd |only man/gen_random_1d.Rd |only man/gen_random_2d.Rd |only man/generate_functional_covariate.Rd |only man/generate_scalar_covariate.Rd |only man/get_default_effect.Rd |only man/get_smooth_label_from_term.Rd |only man/gibbs_cs_fpca.Rd | 13 man/gibbs_cs_wish.Rd | 7 man/gibbs_mult_fpca.Rd | 14 man/gibbs_mult_wish.Rd | 7 man/gls_cs.Rd | 17 man/intercept_presets.Rd |only man/linear_presets.Rd |only man/make_bs_spec.Rd |only man/make_random_2d_fn.Rd |only man/make_random_truth_generator.Rd |only man/ols_cs.Rd | 16 man/parse_pffr_formula.Rd |only man/parse_pffr_model_formula.Rd |only man/parse_single_term.Rd |only man/peer.Rd | 4 man/pffr-core.Rd |only man/pffr-formula.Rd |only man/pffr.Rd | 46 man/pffr.check.Rd | 11 man/pffrGLS.Rd | 59 man/pffrSim.Rd | 93 - man/pffrSim_formula.Rd |only man/pffrSim_legacy.Rd |only man/pffr_attach_metadata.Rd |only man/pffr_build_ar_start.Rd |only man/pffr_build_call.Rd |only man/pffr_build_label_map.Rd |only man/pffr_build_metadata.Rd |only man/pffr_check.Rd |only man/pffr_coefboot.Rd |only man/pffr_configure_algorithm.Rd |only man/pffr_expand_variables.Rd |only man/pffr_get_dimensions.Rd |only man/pffr_gls.Rd |only man/pffr_prepare.Rd |only man/pffr_process_ff_terms.Rd |only man/pffr_process_ffpc_terms.Rd |only man/pffr_process_pcre_terms.Rd |only man/pffr_qq.Rd |only man/pffr_setup_response.Rd |only man/pffr_setup_yind_dense.Rd |only man/pffr_setup_yind_sparse.Rd |only man/pffr_simulate.Rd |only man/pffr_validate_dots.Rd |only man/pffr_validate_ydata.Rd |only man/qq.pffr.Rd | 11 man/re.Rd | 9 man/residuals.pffr.Rd | 17 man/resolve_effect.Rd |only man/resolve_eval_grid_for_term.Rd |only man/sample_pspline_coef_1d.Rd |only man/sample_pspline_coef_2d.Rd |only man/scenario_to_formula.Rd |only man/sff.Rd | 4 man/shift_and_shorten_matrix.Rd |only man/simplify_term_label.Rd |only man/simpson_weights.Rd |only man/simulate_from_family.Rd |only man/smooth_presets.Rd |only man/sym_inv_sqrt.Rd |only man/transform_c_term.Rd |only man/transform_intercept_term.Rd |only man/transform_par_term.Rd |only man/transform_smooth_term.Rd |only man/validate_and_expand_xind.Rd |only man/vb_cs_fpca.Rd | 14 man/vb_cs_wish.Rd | 19 man/vb_mult_fpca.Rd | 15 man/vb_mult_wish.Rd | 13 tests/testthat/Rplots.pdf |only tests/testthat/helper-pffr-fixtures.R |only tests/testthat/helper-pffrSim.R |only tests/testthat/test-pffr-ar.R |only tests/testthat/test-pffr.R | 2065 ++++++++++++++++++++++++++++-- tests/testthat/test-pffrSim.R |only 152 files changed, 9462 insertions(+), 4255 deletions(-)
Title: Protein Quantification in Mass Spectrometry-Based Proteomics
Description: An implementation of the MaxLFQ algorithm by
Cox et al. (2014) <doi:10.1074/mcp.M113.031591> in a comprehensive
pipeline for processing proteomics data in data-independent acquisition mode
(Pham et al. 2020 <doi:10.1093/bioinformatics/btz961>;
Pham et al. 2026 <doi:10.1021/acs.jproteome.5c01038>).
It offers additional options for protein quantification using
the N most intense fragment ions, using all fragment ions,
the median polish algorithm by Tukey (1977, ISBN:0201076160),
and a robust linear model. In general, the tool can be used to integrate
multiple proportional observations into a single quantitative value.
Author: Thang Pham [aut, cre, cph, ctb] ,
Alex Henneman [ctb]
Maintainer: Thang Pham <t.pham@amsterdamumc.nl>
Diff between iq versions 2.0.0 dated 2025-10-06 and 2.0.1 dated 2026-03-21
DESCRIPTION | 15 ++++++++------- LICENSE | 2 +- MD5 | 16 ++++++++-------- R/iq-fast.R | 2 +- R/iq.R | 2 ++ build/vignette.rds |binary inst/CITATION | 33 ++++++++++++++++++++++----------- inst/doc/iq-fast.html | 5 +++-- inst/doc/iq.html | 5 +++-- 9 files changed, 48 insertions(+), 32 deletions(-)
Title: Download and Process GIMMS NDVI3g Data
Description: This is a set of functions to retrieve information about GIMMS
NDVI3g files currently available online; download (and re-arrange, in the
case of NDVI3g.v0) the half-monthly data sets; import downloaded files from
ENVI binary (NDVI3g.v0) or NetCDF format (NDVI3g.v1) directly into R based
on the widespread 'raster' package; conduct quality control; and generate
monthly composites (e.g., maximum values) from the half-monthly input data.
As a special gimmick, a method is included to conveniently apply the
Mann-Kendall trend test upon 'Raster*' images, optionally featuring
trend-free pre-whitening to account for lag-1 autocorrelation.
Author: Florian Detsch [cre, aut]
Maintainer: Florian Detsch <fdetsch@web.de>
Diff between gimms versions 1.2.4 dated 2025-11-30 and 1.2.5 dated 2026-03-21
DESCRIPTION | 10 LICENSE | 4 MD5 | 69 +-- NAMESPACE | 42 +- NEWS | 206 +++++----- NEWS.md | 206 +++++----- R/downloadGimms.R | 510 ++++++++++++------------- R/gimms-package.R | 110 ++--- R/gimmsControls.R | 600 ++++++++++++++--------------- R/monthlyComposite.R | 288 +++++++------- R/monthlyIndices.R | 182 ++++----- R/oldNaming.R | 164 ++++---- R/qualityControl.R | 314 +++++++-------- R/rasterizeGimms.R | 496 ++++++++++++------------ R/rearrangeFiles.R | 132 +++--- R/significantTau.R | 424 ++++++++++----------- R/updateInventory.R | 722 ++++++++++++++++++------------------ README.md | 254 ++++++------ build/partial.rdb |binary inst/extdata/poles.html | 20 inst/tinytest/test-getPolesFTP.R | 178 ++++---- inst/tinytest/test-significantTau.R |only inst/tinytest/tests.R | 206 +++++----- man/bale3g.v1.Rd | 32 - man/downloadGimms.Rd | 266 ++++++------- man/gimms-package.Rd | 84 ++-- man/kili3g.v0.Rd | 32 - man/monthlyComposite.Rd | 156 +++---- man/monthlyIndices.Rd | 116 ++--- man/oldNaming.Rd | 98 ++-- man/qualityControl.Rd | 118 ++--- man/rasterizeGimms.Rd | 164 ++++---- man/rearrangeFiles.Rd | 82 ++-- man/significantTau.Rd | 244 ++++++------ man/updateInventory.Rd | 132 +++--- tests/tinytest.R | 10 36 files changed, 3338 insertions(+), 3333 deletions(-)
Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <https://curl.se/libcurl/>
Provides functions to allow one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Author: CRAN Team [ctb, cre] ,
Duncan Temple Lang [aut]
Maintainer: CRAN Team <CRAN@r-project.org>
Diff between RCurl versions 1.98-1.17 dated 2025-03-22 and 1.98-1.18 dated 2026-03-21
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- src/curl.c | 6 +++++- 3 files changed, 12 insertions(+), 7 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Description: A rich hierarchy of sparse and dense matrix classes,
including general, symmetric, triangular, and diagonal matrices
with numeric, logical, or pattern entries. Efficient methods for
operating on such matrices, often wrapping the 'BLAS', 'LAPACK',
and 'SuiteSparse' libraries.
Author: Douglas Bates [aut] ,
Martin Maechler [aut, cre] ,
Mikael Jagan [aut] ,
Timothy A. Davis [ctb] ,
pattern="License", full.names=TRUE, recursive=TRUE)),
George Karypis [ctb] ,
Jason Riedy [ctb] and onenormest, Copyright: Regents of the
University of C [...truncated...]
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
Diff between Matrix versions 1.7-4 dated 2025-08-28 and 1.7-5 dated 2026-03-21
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++++ inst/doc/Comparisons.pdf |binary inst/doc/Design-issues.pdf |binary inst/doc/Intro2Matrix.pdf |binary inst/doc/Introduction.pdf |binary inst/doc/sparseModels.pdf |binary inst/include/Matrix/version.h | 4 ++-- src/cholmod-common.c | 5 +++++ src/version.h | 4 ++-- 13 files changed, 34 insertions(+), 20 deletions(-)
Title: Client for US Treasury XML Feed and Published Data
Description: Download daily interest rates from the US Treasury XML feed.
Leveraging
<https://home.treasury.gov/treasury-daily-interest-rate-xml-feed>,
this package serves as a wrapper, facilitating the retrieval of daily
treasury rates across various categories, including par yield curves,
treasury bills, long-term rates, and real yield curves.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between treasury versions 0.4.0 dated 2025-08-26 and 0.5.0 dated 2026-03-21
DESCRIPTION | 8 ++++---- MD5 | 20 +++++++++++--------- NAMESPACE | 4 ++++ NEWS.md | 4 ++++ R/cache.R |only R/interest-rate.R | 14 ++++++++------ R/treasury-package.R | 6 ++++++ README.md | 18 ++++++++---------- man/figures/README-plot-1.png |binary man/tr_cache_dir.Rd |only tests/testthat/test-interest-rate.R | 6 +++--- tests/testthat/test-yield-curve.R | 18 +++++++++--------- 12 files changed, 57 insertions(+), 41 deletions(-)
Title: Signature Overrepresentation Analysis
Description: Pathway Analysis is statistically linking observations on
the molecular level to biological processes or pathways on
the systems(i.e., organism, organ, tissue, cell) level.
Traditionally, pathway analysis methods regard pathways
as collections of single genes and treat all genes in a pathway
as equally informative. However, this can lead to identifying
spurious pathways as statistically significant since components
are often shared amongst pathways. SIGORA seeks to avoid this
pitfall by focusing on genes or gene pairs that are (as a combination)
specific to a single pathway.
In relying on such pathway gene-pair signatures (Pathway-GPS),
SIGORA inherently uses the status of other genes in the
experimental context to identify the most relevant pathways.
The current version allows for pathway analysis of human
and mouse datasets. In addition, it contains pre-computed
Pathway-GPS data for pathways in the KEGG and Reactome
pathway repositories and mechanisms for extracting GPS
for user-sup [...truncated...]
Author: Amir Foroushani [aut] ,
Fiona Brinkman [aut],
David Lynn [aut],
Witold Wolski [cre]
Maintainer: Witold Wolski <witold.wolski@fgcz.uzh.ch>
Diff between sigora versions 3.1.1 dated 2021-11-30 and 3.2.0 dated 2026-03-21
DESCRIPTION | 21 MD5 | 68 +- NAMESPACE | 18 NEWS.md | 21 R/aa_package.R | 291 ++++----- R/genesFromRandomPathways.R | 112 +-- R/getGenes.R | 118 ++- R/getURL.R | 120 ++- R/load_data.R | 24 R/makeGPS.R | 407 ++++++------- R/ora.R | 189 +++--- R/sigora-package.R | 56 - R/sigora.R | 495 ++++++++-------- README.md | 122 ++-- build/vignette.rds |binary data/datalist | 12 inst/CITATION | 27 inst/doc/Sigora.R | 140 ++-- inst/doc/Sigora.Rmd | 348 +++++------ inst/doc/Sigora.html | 1247 +++++++++++++++++++++-------------------- man/genesFromRandomPathways.Rd | 115 +-- man/getGenes.Rd | 90 +- man/getURL.Rd | 83 +- man/idmap.Rd | 40 - man/kegH.Rd | 58 - man/kegM.Rd | 52 - man/load_data.Rd | 46 - man/makeGPS.Rd | 189 +++--- man/nciTable.Rd | 70 +- man/ora.Rd | 108 +-- man/reaH.Rd | 52 - man/reaM.Rd | 58 - man/sigora-package.Rd | 79 +- man/sigora.Rd | 211 +++--- vignettes/Sigora.Rmd | 348 +++++------ 35 files changed, 2807 insertions(+), 2628 deletions(-)
Title: Convert Digital Images into 'SpatRaster' Objects
Description: Generate 'SpatRaster' objects, as defined by the 'terra'
package, from digital images, using a specified spatial object as a
geographical reference.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between rasterpic versions 0.3.1 dated 2026-01-14 and 0.4.0 dated 2026-03-21
rasterpic-0.3.1/rasterpic/inst/doc/rasterpic.Rmd |only rasterpic-0.3.1/rasterpic/vignettes/rasterpic.Rmd |only rasterpic-0.4.0/rasterpic/DESCRIPTION | 10 rasterpic-0.4.0/rasterpic/MD5 | 32 rasterpic-0.4.0/rasterpic/NEWS.md | 4 rasterpic-0.4.0/rasterpic/R/asp_ratio.R | 6 rasterpic-0.4.0/rasterpic/R/rasterpic_img.R | 34 rasterpic-0.4.0/rasterpic/R/utils.R | 19 rasterpic-0.4.0/rasterpic/README.md | 38 - rasterpic-0.4.0/rasterpic/build/vignette.rds |binary rasterpic-0.4.0/rasterpic/inst/doc/rasterpic.R | 24 rasterpic-0.4.0/rasterpic/inst/doc/rasterpic.html | 365 +++------- rasterpic-0.4.0/rasterpic/inst/doc/rasterpic.qmd |only rasterpic-0.4.0/rasterpic/inst/schemaorg.json | 4 rasterpic-0.4.0/rasterpic/man/asp_ratio.Rd | 6 rasterpic-0.4.0/rasterpic/man/rasterpic_img.Rd | 20 rasterpic-0.4.0/rasterpic/tests/testthat/_snaps/errors_messages.md | 14 rasterpic-0.4.0/rasterpic/tests/testthat/_snaps/online.md | 2 rasterpic-0.4.0/rasterpic/vignettes/rasterpic.qmd |only 19 files changed, 246 insertions(+), 332 deletions(-)
Title: Client for Central Bank APIs
Description: A client for retrieving data and metadata from major central
bank APIs. It supports access to the 'Bundesbank SDMX Web Service API'
(<https://www.bundesbank.de/en/statistics/time-series-databases/help-for-sdmx-web-service/web-service-interface-data>),
the 'Swiss National Bank Data Portal' (<https://data.snb.ch/en>), the
'European Central Bank Data Portal API'
(<https://data.ecb.europa.eu/help/api/overview>), the 'Bank of England
Interactive Statistical Database'
(<https://www.bankofengland.co.uk/boeapps/database>), the 'Banco de
España API'
(<https://www.bde.es/webbe/en/estadisticas/recursos/api-estadisticas-bde.html>),
the 'Bank for International Settlements SDMX Web Service'
(<https://stats.bis.org/api-doc/v1/>),
the 'Banque de France Web Service'
(<https://webstat.banque-france.fr/en/pages/guide-migration-api/>),
the 'Norges Bank SDMX Web Service'
(<https://www.norges-bank.no/en/topics/Statistics/open-data/>),
the 'Oesterreichische Nat [...truncated...]
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between bbk versions 0.8.0 dated 2025-10-01 and 0.9.0 dated 2026-03-21
DESCRIPTION | 14 ++- MD5 | 120 ++++++++++++++++++----------- NAMESPACE | 18 ++++ NEWS.md | 20 ++++ R/assertions.R | 3 R/bbk-package.R | 9 +- R/bbk.R | 96 +++++++++++------------ R/bde.R | 62 ++++++++++++-- R/bdf.R | 40 ++++++--- R/bis.R |only R/boc.R | 34 ++++---- R/boe.R | 63 +++++++++------ R/cache.R |only R/ecb.R | 89 ++++++++++++--------- R/fx-rates.R | 5 - R/nob.R |only R/onb.R | 39 +++++---- R/purrr.R |only R/sdmx.R |only R/snb.R | 79 ++++++++++++++----- R/srb.R |only R/utils.R | 6 - README.md | 22 ++++- man/bbk-package.Rd | 2 man/bbk_data.Rd | 9 +- man/bbk_dimension.Rd |only man/bbk_metadata.Rd | 11 ++ man/bbk_series.Rd | 9 +- man/bde_data.Rd | 7 + man/bde_latest.Rd |only man/bdf_codelist.Rd | 12 ++ man/bdf_data.Rd | 11 ++ man/bdf_dataset.Rd | 12 ++ man/bis_data.Rd |only man/bis_dimension.Rd |only man/bis_metadata.Rd |only man/boc_data.Rd | 7 + man/boe_data.Rd | 17 +++- man/cache.Rd |only man/ecb_data.Rd | 16 +++ man/ecb_dimension.Rd |only man/ecb_metadata.Rd | 11 ++ man/figures/README-plotting-1.png |binary man/nob_data.Rd |only man/nob_dimension.Rd |only man/nob_metadata.Rd |only man/onb_data.Rd | 9 +- man/onb_dimension.Rd | 11 ++ man/onb_frequency.Rd | 19 +++- man/onb_hierarchy.Rd | 11 ++ man/onb_metadata.Rd | 11 ++ man/onb_toc.Rd | 11 ++ man/snb_data.Rd | 7 + man/snb_dimension.Rd |only man/srb_calendar.Rd |only man/srb_cross_rates.Rd |only man/srb_data.Rd |only man/srb_series.Rd |only tests/testthat/fixtures/bde-latest.rds |only tests/testthat/fixtures/bis-data.xml |only tests/testthat/fixtures/bis-metadata.xml |only tests/testthat/fixtures/nob-data.xml |only tests/testthat/fixtures/nob-metadata.xml |only tests/testthat/fixtures/snb-dimensions.rds |only tests/testthat/fixtures/srb-calendar.rds |only tests/testthat/fixtures/srb-crossrates.rds |only tests/testthat/fixtures/srb-data.json |only tests/testthat/fixtures/srb-groups.json |only tests/testthat/fixtures/srb-series.json |only tests/testthat/test-bbk.R | 15 ++- tests/testthat/test-bde.R | 20 ++++ tests/testthat/test-bis.R |only tests/testthat/test-boe.R | 12 +- tests/testthat/test-ecb.R | 11 ++ tests/testthat/test-exchange-rates.R | 2 tests/testthat/test-nob.R |only tests/testthat/test-sdmx.R |only tests/testthat/test-snb.R | 14 +++ tests/testthat/test-srb.R |only 79 files changed, 712 insertions(+), 284 deletions(-)
Title: Stack and Reshape Datasets After Splitting Concatenated Values
Description: Online data collection tools like Google Forms often export
multiple-response questions with data concatenated in cells. The
concat.split (cSplit) family of functions splits such data into separate
cells. The package also includes functions to stack groups of columns and
to reshape wide data, even when the data are "unbalanced"---something
which reshape (from base R) does not handle, and which melt and dcast from
reshape2 do not easily handle.
Author: Ananda Mahto [aut, cre]
Maintainer: Ananda Mahto <mrdwab@gmail.com>
Diff between splitstackshape versions 1.4.8 dated 2019-04-21 and 1.4.8.1 dated 2026-03-21
DESCRIPTION | 14 +++++++++----- MD5 | 6 +++--- NEWS.md | 2 +- data/concatenated.RData |binary 4 files changed, 13 insertions(+), 9 deletions(-)
More information about splitstackshape at CRAN
Permanent link
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations
on them. Data types include point patterns, windows (domains),
pixel images, line segment patterns, tessellations and hyperframes.
Capabilities include creation and manipulation of data
(using command line or graphical interaction),
plotting, geometrical operations (rotation, shift, rescale,
affine transformation), convex hull, discretisation and
pixellation, Dirichlet tessellation, Delaunay triangulation,
pairwise distances, nearest-neighbour distances,
distance transform, morphological operations
(erosion, dilation, closing, opening), quadrat counting,
geometrical measurement, geometrical covariance,
colour maps, calculus on spatial domains,
Gaussian blur, level sets of images, transects of images,
intersections between objects, minimum distance matching.
(Excludes spatial data on a network, which are supported by
the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Warick Brown [ctb],
Tilman Davies [ctb],
Ute Hahn [ctb],
Martin Hazelton [ctb],
Abdollah Jalilian [ctb],
Greg McSwiggan [ctb, cph],
Sebastian Meyer [ctb, cph],
Jens Oeh [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 3.7-0 dated 2026-01-20 and 3.7-2 dated 2026-03-21
DESCRIPTION | 14 +- MD5 | 132 ++++++++++++------------ NAMESPACE | 15 ++ NEWS | 101 ++++++++++++++++++ R/colourschemes.R | 2 R/connected.R | 2 R/convexdist.R | 2 R/diagram.R | 2 R/distfun.R | 2 R/distmap.R | 47 +++++--- R/eval.im.R | 12 +- R/exactdt.R | 32 +++-- R/funxy.R | 2 R/hyperframe.R | 2 R/hypersub.R | 2 R/images.R | 2 R/layered.R | 2 R/marks.R | 2 R/minkowski.R | 204 +++++++++++++++++++++++++++++++------ R/morphology.R | 97 +++++++++-------- R/nncross.R | 11 +- R/nndist.R | 107 +++++++++++++------ R/nnfun.R | 2 R/nnmap.R | 21 ++- R/options.R | 6 + R/plot.im.R | 2 R/pointweights.R | 27 +++- R/pp3.R | 2 R/psp.R | 27 +++- R/simplepanel.R | 2 R/split.ppp.R | 2 R/sptfun.R |only R/tess.R | 137 ++++++++++++++++++++++++- R/texture.R | 2 R/units.R | 16 ++ R/util.R | 74 ++++++++++--- R/window.R | 51 +++++---- R/wingeom.R | 31 ++++- inst/doc/packagesizes.txt | 3 inst/info/packagesizes.txt | 3 man/FeretBox.Rd |only man/FeretDiamFun.Rd |only man/SupportFun.Rd |only man/distmap.ppp.Rd | 15 ++ man/fillholes.owin.Rd | 4 man/intensity.ppp.Rd | 5 man/macros/defns.Rd | 5 man/mergeTiles.Rd |only man/nncross.Rd | 14 ++ man/nndist.Rd | 10 + man/nnmap.Rd | 15 +- man/polarbody.Rd |only man/spatstat.geom-internal.Rd | 12 +- man/tess.Rd | 3 src/exactdist.c | 27 ++-- src/init.c | 12 +- src/knnXdist.h | 14 ++ src/knndist.h | 14 ++ src/knndistance.c | 228 ++++++++++++++++++++++++++++++++++-------- src/knngrid.c | 66 ++++++++++-- src/knngrid.h | 11 +- src/nndist.h | 9 + src/nndistX.h | 12 +- src/nndistance.c | 214 ++++++++++++++++++++++++++++++++------- src/nngrid.c | 63 ++++++++++- src/nngrid.h | 11 +- src/proto.h | 12 +- tests/testsGtoJ.R | 24 ++++ tests/testsNtoO.R | 37 ++++++ tests/testsP2.R | 21 +++ 70 files changed, 1587 insertions(+), 473 deletions(-)
Title: Using Fonts More Easily in R Graphs
Description: Making it easy to use various types of fonts ('TrueType',
'OpenType', Type 1, web fonts, etc.) in R graphs, and supporting most output
formats of R graphics including PNG, PDF and SVG. Text glyphs will be converted
into polygons or raster images, hence after the plot has been created, it no
longer relies on the font files. No external software such as 'Ghostscript' is
needed to use this package.
Author: Yixuan Qiu [aut, cre],
Dave Raggett [ctb]
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between showtext versions 0.9-7 dated 2024-03-02 and 0.9-8 dated 2026-03-21
DESCRIPTION | 21 ++-- MD5 | 34 +++---- build/vignette.rds |binary inst/NEWS.Rd | 8 + inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 131 ++++++++++++++--------------- src/array.c | 38 ++++---- src/cairodev.c | 16 +-- src/cairodev.h | 33 ++++++- src/devfuns.c | 61 +++++++------ src/fonts.c | 201 +++++++++++++++++++++++++++++++++++---------- src/fonts.h | 2 src/outline.c | 54 ++++++------ src/raster.c | 76 ++++++++++------- src/showtext.c | 18 ++-- src/util.c | 8 + src/util.h | 1 vignettes/introduction.Rmd | 2 18 files changed, 451 insertions(+), 255 deletions(-)
Title: Visualizing Panel Data
Description: Visualizes panel data. It has three main functionalities: (1) it plots the treatment status and missing values in a panel dataset; (2) it visualizes the temporal dynamics of a main variable of interest; (3) it depicts the bivariate relationships between a treatment variable and an outcome variable either by unit or in aggregate. For details, see <doi:10.18637/jss.v107.i07>.
Author: Yiqing Xu [aut, cre] ,
Hongyu Mou [aut],
Licheng Liu [aut]
Maintainer: Yiqing Xu <yiqingxu@stanford.edu>
Diff between panelView versions 1.2.0 dated 2026-03-11 and 1.2.1 dated 2026-03-21
DESCRIPTION | 30 +++++++++++++++++------------- MD5 | 12 ++++++------ NAMESPACE | 2 +- R/panelView.R | 10 +++++----- R/plot-bivariate.R | 18 +++++++++--------- R/plot-outcome.R | 22 +++++++++++----------- R/plot-treat.R | 10 +++++----- 7 files changed, 54 insertions(+), 50 deletions(-)
Title: Graphical Multiple Comparison Procedures
Description: Multiple comparison procedures (MCPs) control the familywise error
rate in clinical trials. Graphical MCPs include many commonly used
procedures as special cases; see Bretz et al. (2011)
<doi:10.1002/bimj.201000239>, Lu (2016) <doi:10.1002/sim.6985>, and Xi et
al. (2017) <doi:10.1002/bimj.201600233>. This package is a low-dependency
implementation of graphical MCPs which allow mixed types of tests. It also
includes power simulations and visualization of graphical MCPs.
Author: Dong Xi [aut, cre],
Ethan Brockmann [aut],
Gilead Sciences, Inc. [cph, fnd]
Maintainer: Dong Xi <dong.xi1@gilead.com>
Diff between graphicalMCP versions 0.2.8 dated 2025-05-06 and 0.2.9 dated 2026-03-21
graphicalMCP-0.2.8/graphicalMCP/tests/testthat/Rplots.pdf |only graphicalMCP-0.2.9/graphicalMCP/DESCRIPTION | 8 +- graphicalMCP-0.2.9/graphicalMCP/MD5 | 19 ++--- graphicalMCP-0.2.9/graphicalMCP/NEWS.md | 5 + graphicalMCP-0.2.9/graphicalMCP/R/graph_test_closure.R | 11 ++ graphicalMCP-0.2.9/graphicalMCP/build/partial.rdb |binary graphicalMCP-0.2.9/graphicalMCP/inst/doc/closed-testing.html | 26 +++--- graphicalMCP-0.2.9/graphicalMCP/inst/doc/graph-examples.html | 38 +++++----- graphicalMCP-0.2.9/graphicalMCP/inst/doc/graphicalMCP.html | 14 +-- graphicalMCP-0.2.9/graphicalMCP/inst/doc/internal-validation.html | 14 +-- graphicalMCP-0.2.9/graphicalMCP/inst/doc/shortcut-testing.html | 26 +++--- 11 files changed, 85 insertions(+), 76 deletions(-)
Title: Utilities for Interacting with the 'Posit Connect' Server API
Description: Provides a helpful 'R6' class and methods for interacting with
the 'Posit Connect' Server API along with some meaningful utility functions
for regular tasks. API documentation varies by 'Posit Connect' installation
and version, but the latest documentation is also hosted publicly at
<https://docs.posit.co/connect/api/>.
Author: Kara Woo [aut, cre],
Toph Allen [aut],
Neal Richardson [aut],
Sean Lopp [aut],
Cole Arendt [aut],
Posit, PBC [cph, fnd]
Maintainer: Kara Woo <kara.woo@posit.co>
Diff between connectapi versions 0.11.0 dated 2026-02-25 and 0.11.1 dated 2026-03-21
DESCRIPTION | 6 ++--- MD5 | 22 ++++++++++----------- NEWS.md | 4 +++ R/get.R | 2 - R/parse.R | 8 +++++++ R/ptype.R | 2 - README.md | 3 -- inst/doc/customize-http.html | 4 +-- inst/doc/getting-started.html | 4 +-- man/get_usage.Rd | 2 - tests/testthat/test-get.R | 5 ++-- tests/testthat/test-parse.R | 43 ++++++++++++++++++++++++++++++++++++++++++ 12 files changed, 80 insertions(+), 25 deletions(-)
Title: Summarise and Visualise Characteristics of Patients in the OMOP
CDM
Description: Summarise and visualise the characteristics of patients in data
mapped to the Observational Medical Outcomes Partnership (OMOP) common data
model (CDM).
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [ctb] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Marta Alcalde [aut]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between CohortCharacteristics versions 1.1.1 dated 2026-01-28 and 1.1.2 dated 2026-03-21
DESCRIPTION | 6 MD5 | 244 NAMESPACE | 108 NEWS.md | 203 R/CohortCharacteristics-package.R | 56 R/benchmarkCohortCharacteristics.R | 528 R/checks.R | 252 R/documentationHelpers.R | 206 R/plot.R | 414 R/plotCharacteristics.R | 328 R/plotCohortAttrition.R | 840 - R/plotCohortCount.R | 158 R/plotCohortOverlap.R | 246 R/plotCohortTiming.R | 366 R/plotComparedLargeScaleCharacteristics.R | 318 R/plotLargeScaleCharacteristics.R | 154 R/reexports.R | 160 R/summariseCharacteristics.R | 1353 - R/summariseCohortAttrition.R | 246 R/summariseCohortCodelist.R | 350 R/summariseCohortCount.R | 112 R/summariseCohortOverlap.R | 508 R/summariseCohortTiming.R | 524 R/summariseLargeScaleCharacteristics.R | 1294 - R/table.R | 250 R/tableCharacteristics.R | 138 R/tableCohortAttrition.R | 120 R/tableCohortCount.R | 120 R/tableCohortOverlap.R | 136 R/tableCohortTiming.R | 180 R/tableLargeScaleCharacteristics.R | 532 R/utilities.R | 126 README.md | 624 build/vignette.rds |binary inst/WORDLIST | 124 inst/doc/summarise_characteristics.R | 322 inst/doc/summarise_characteristics.Rmd | 456 inst/doc/summarise_characteristics.html |12400 +++++++-------- inst/doc/summarise_cohort_overlap.R | 134 inst/doc/summarise_cohort_overlap.Rmd | 198 inst/doc/summarise_cohort_overlap.html | 3150 +-- inst/doc/summarise_cohort_timing.R | 164 inst/doc/summarise_cohort_timing.Rmd | 224 inst/doc/summarise_cohort_timing.html | 3184 +-- inst/doc/summarise_large_scale_characteristics.R | 134 inst/doc/summarise_large_scale_characteristics.Rmd | 224 inst/doc/summarise_large_scale_characteristics.html | 6179 +++---- man/CohortCharacteristics-package.Rd | 78 man/availablePlotColumns.Rd | 54 man/availableTableColumns.Rd | 58 man/benchmarkCohortCharacteristics.Rd | 86 man/cohortDoc.Rd | 24 man/cohortIdDoc.Rd | 26 man/figures/attrition.svg | 40 man/figures/lifecycle-archived.svg | 42 man/figures/lifecycle-defunct.svg | 42 man/figures/lifecycle-deprecated.svg | 42 man/figures/lifecycle-experimental.svg | 42 man/figures/lifecycle-maturing.svg | 42 man/figures/lifecycle-questioning.svg | 42 man/figures/lifecycle-soft-deprecated.svg | 42 man/figures/lifecycle-stable.svg | 58 man/figures/lifecycle-superseded.svg | 42 man/mockCohortCharacteristics.Rd | 90 man/plotCharacteristics.Rd | 176 man/plotCohortAttrition.Rd | 110 man/plotCohortCount.Rd | 126 man/plotCohortOverlap.Rd | 112 man/plotCohortTiming.Rd | 168 man/plotComparedLargeScaleCharacteristics.Rd | 148 man/plotDoc.Rd | 48 man/plotLargeScaleCharacteristics.Rd | 128 man/reexports.Rd | 50 man/resultDoc.Rd | 24 man/strataDoc.Rd | 26 man/summariseCharacteristics.Rd | 268 man/summariseCohortAttrition.Rd | 64 man/summariseCohortCodelist.Rd | 84 man/summariseCohortCount.Rd | 70 man/summariseCohortOverlap.Rd | 84 man/summariseCohortTiming.Rd | 102 man/summariseLargeScaleCharacteristics.Rd | 164 man/tableCharacteristics.Rd | 146 man/tableCohortAttrition.Rd | 146 man/tableCohortCodelist.Rd | 80 man/tableCohortCount.Rd | 146 man/tableCohortOverlap.Rd | 154 man/tableCohortTiming.Rd | 178 man/tableDoc.Rd | 90 man/tableLargeScaleCharacteristics.Rd | 138 man/tableTopLargeScaleCharacteristics.Rd | 146 man/timeScaleDoc.Rd | 24 man/uniqueCombinationsDoc.Rd | 26 tests/manual/test-sqltest.R | 188 tests/spelling.R | 10 tests/testthat.R | 24 tests/testthat/setup.R | 118 tests/testthat/test-benchmarkCohortCharacteristics.R | 44 tests/testthat/test-plotCharacteristics.R | 472 tests/testthat/test-plotCohortAttrition.R | 82 tests/testthat/test-plotCohortCount.R | 50 tests/testthat/test-plotCohortOverlap.R | 214 tests/testthat/test-plotCohortTiming.R | 508 tests/testthat/test-plotLargeScaleCharacteristics.R | 328 tests/testthat/test-summariseCharacteristics.R | 3406 ++-- tests/testthat/test-summariseCohortAttrition.R | 60 tests/testthat/test-summariseCohortCodelist.R | 130 tests/testthat/test-summariseCohortCount.R | 52 tests/testthat/test-summariseCohortOverlap.R | 594 tests/testthat/test-summariseCohortTiming.R | 320 tests/testthat/test-summariseLargeScaleCharacteristics.R | 930 - tests/testthat/test-table.R | 18 tests/testthat/test-tableCharacteristics.R | 258 tests/testthat/test-tableCohortAttrition.R | 24 tests/testthat/test-tableCohortCount.R | 32 tests/testthat/test-tableCohortOverlap.R | 152 tests/testthat/test-tableCohortTiming.R | 226 tests/testthat/test-tableLargeScaleCharacteristics.R | 380 tests/testthat/test-utilities.R | 52 vignettes/summarise_characteristics.Rmd | 456 vignettes/summarise_cohort_overlap.Rmd | 198 vignettes/summarise_cohort_timing.Rmd | 224 vignettes/summarise_large_scale_characteristics.Rmd | 224 123 files changed, 25976 insertions(+), 25967 deletions(-)
More information about CohortCharacteristics at CRAN
Permanent link
Title: Spatial Regression Analysis
Description: A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep'. These model fitting functions include maximum likelihood methods for cross-sectional models proposed by 'Cliff' and 'Ord' (1973, ISBN:0850860369) and (1981, ISBN:0850860814), fitting methods initially described by 'Ord' (1975) <doi:10.1080/01621459.1975.10480272>. The models are further described by 'Anselin' (1988) <doi:10.1007/978-94-015-7799-1>. Spatial two stage least squares and spatial general method of moment models initially proposed by 'Kelejian' and 'Prucha' (1998) <doi:10.1023/A:1007707430416> and (1999) <doi:10.1111/1468-2354.00027> are provided. Impact methods and MCMC fitting methods proposed by 'LeSage' and 'Pace' (2009) <doi:10.1201/9781420064254> are implemented for the family of cross-sectional spatial regression models. Methods for fitting the log determinant term in maximu [...truncated...]
Author: Roger Bivand [cre, aut] ,
Gianfranco Piras [aut],
Luc Anselin [ctb] ,
Andrew Bernat [ctb],
Eric Blankmeyer [ctb],
Yongwan Chun [ctb] ,
Virgilio Gomez-Rubio [ctb] ,
Daniel Griffith [ctb] ,
Martin Gubri [ctb] ,
Rein Halbersma [ctb],
James LeSage [ctb], [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spatialreg versions 1.4-2 dated 2025-09-06 and 1.4-3 dated 2026-03-20
DESCRIPTION | 47 +++++++++++---------- MD5 | 42 +++++++++---------- NAMESPACE | 7 ++- NEWS.md | 2 R/impacts.R | 15 ++++-- R/kpgm_new.R | 7 +-- R/mess.R | 6 -- R/s2sls.R | 7 +-- R/sarlm_functions.R | 15 ++++++ R/sarlm_tests.R | 7 +-- R/spBreg.R | 9 +--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/SpatialFiltering.html | 4 - inst/doc/nb_igraph.html | 8 +-- inst/doc/sids_models.html | 6 +- man/ML_models.Rd | 7 ++- man/gstsls.Rd | 4 - man/impacts.Rd | 8 +-- man/sarlm_tests.Rd | 6 -- man/stsls.Rd | 5 -- src/ml_sse.c | 88 ++++++++++++++++++++++++++++++++++++----- 22 files changed, 193 insertions(+), 107 deletions(-)
Title: Multivariate Multiscale Spatial Analysis
Description: Tools for the multiscale spatial analysis of multivariate data.
Several methods are based on the use of a spatial weighting matrix and its
eigenvector decomposition (Moran's Eigenvectors Maps, MEM).
Several approaches are described in the review Dray et al (2012)
<doi:10.1890/11-1183.1>.
Author: Stephane Dray [aut] ,
David Bauman [ctb],
Guillaume Blanchet [ctb],
Daniel Borcard [ctb],
Sylvie Clappe [ctb],
Guillaume Guenard [ctb] ,
Thibaut Jombart [ctb],
Guillaume Larocque [ctb],
Pierre Legendre [ctb] ,
Naima Madi [ctb],
Helene H Wagner [ctb], [...truncated...]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between adespatial versions 0.3-28 dated 2025-04-16 and 0.3-29 dated 2026-03-20
DESCRIPTION | 17 MD5 | 12 R/TBI.R | 15 build/partial.rdb |binary build/vignette.rds |binary inst/doc/tutorial.html | 1239 +++++++++++++++++++++++++++++++------------------ man/TBI.Rd | 10 7 files changed, 827 insertions(+), 466 deletions(-)
Title: Analysis of Ecological Data: Exploratory and Euclidean Methods
in Environmental Sciences
Description: Tools for multivariate data analysis. Several methods are provided for the analysis (i.e., ordination) of one-table (e.g., principal component analysis, correspondence analysis), two-table (e.g., coinertia analysis, redundancy analysis), three-table (e.g., RLQ analysis) and K-table (e.g., STATIS, multiple coinertia analysis). The philosophy of the package is described in Dray and Dufour (2007) <doi:10.18637/jss.v022.i04>.
Author: Stephane Dray [aut] ,
Anne-Beatrice Dufour [aut] ,
Jean Thioulouse [aut] ,
Daniel Chessel [ant],
Thibaut Jombart [ctb],
Sandrine Pavoine [ctb],
Jean R. Lobry [ctb],
Sebastien Ollier [ctb],
Daniel Borcard [ctb],
Pierre Legendre [ctb],
Stephanie Bougea [...truncated...]
Maintainer: Aurelie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between ade4 versions 1.7-23 dated 2025-02-14 and 1.7-24 dated 2026-03-20
DESCRIPTION | 17 +-- MD5 | 25 ++--- NAMESPACE | 6 + R/dpcaiv.R |only R/loocv.R | 2 R/pcaiv.R | 4 R/varipart.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/faq.html | 185 ++++++++++++++++++++------------------- man/dpcaiv.Rd |only man/loocv.bca.Rd | 3 man/pcaiv.Rd | 7 + man/varipart.Rd | 4 vignettes/ade4_with_ggplot2.html |only 15 files changed, 139 insertions(+), 116 deletions(-)
Title: Collection of Correlation and Association Estimators
Description: Compute correlation and other association matrices from
small to high-dimensional datasets with relative simple functions and
sensible defaults. Includes options for shrinkage and robustness to improve
results in noisy or high-dimensional settings (p >= n), plus convenient
print/plot methods for inspection. Implemented with optimised C++ backends
using BLAS/OpenMP and memory-aware symmetric updates. Works with base
matrices and data frames, returning standard R objects via a consistent S3
interface. Useful across genomics, agriculture, and machine-learning
workflows. Supports Pearson, Spearman, Kendall, distance correlation,
partial correlation, and robust biweight mid-correlation; Bland–Altman
analyses and Lin's concordance correlation coefficient (including
repeated-measures extensions). Methods based on Ledoit and Wolf (2004)
<doi:10.1016/S0047-259X(03)00096-4>; Schäfer and Strimmer (2005)
<doi:10.2202/1544-6115.1175>; Lin (1989) <doi:10.2307/2532051>.
Author: Thiago de Paula Oliveira [aut, cre]
Maintainer: Thiago de Paula Oliveira <thiago.paula.oliveira@gmail.com>
Diff between matrixCorr versions 0.8.4 dated 2026-03-03 and 0.8.5 dated 2026-03-20
DESCRIPTION | 6 - MD5 | 10 +- README.md | 12 ++- build/partial.rdb |binary src/kendall_corr.cpp | 185 +++++++++++++++++++++------------------------------ src/pearson.cpp | 114 +++++++++++++++---------------- 6 files changed, 153 insertions(+), 174 deletions(-)
Title: Management Strategy Evaluation for Salmon Species
Description: Simulation tools to evaluate the long-term effects of salmon management strategies, including a combination of habitat, harvest, and
habitat actions. The stochastic age-structured operating model accommodates complex life histories, including freshwater survival across
early life stages, juvenile survival and fishery exploitation in the marine life stage, partial maturity by age class, and fitness impacts of
hatchery programs on natural spawning populations. 'salmonMSE' also provides an age-structured conditioning model to develop operating models
fitted to data.
Author: Quang Huynh [aut, cre]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between salmonMSE versions 0.1.0 dated 2025-09-23 and 1.0.0 dated 2026-03-20
DESCRIPTION | 15 MD5 | 81 ++--- NAMESPACE | 33 ++ NEWS.md |only R/AHA.R | 4 R/CM.R | 652 ++++++++++++++++++++++--------------------- R/CM_int.R | 141 ++++++--- R/CMfun.R | 563 ++++++++++++++++++++++++++++++++----- R/Harvest_MMP.R | 2 R/MMSE2SMSE.R | 13 R/Rel.R | 81 +++-- R/SOM2MOM.R | 189 ++++-------- R/SOM2MOM_int.R | 232 +++++++-------- R/SRR.R | 1 R/compare.R | 65 +++- R/define-SOM.R | 37 -- R/hatchery.R | 62 +++- R/multiHist2SHist.R | 25 - R/plot-SOM.R | 8 R/plot-statevar.R | 160 ++++++++++ R/plot-table.R | 14 R/ref.R | 6 R/rmd_SMSE.R | 352 ++++++++++++++++++++++- R/salmonMSE.R | 85 +++++ data/glossary.rda |binary inst/include/CMreport.Rmd | 572 +++++++++++++++++++------------------ inst/include/SMSEcompare.Rmd |only man/Bio-class.Rd | 12 man/CM2SOM.Rd | 2 man/CMfigures.Rd |only man/Hatchery-class.Rd | 23 - man/Historical-class.Rd | 36 -- man/SHist-class.Rd | 4 man/SMSE-class.Rd | 2 man/SOM-class.Rd | 2 man/compare.Rd |only man/compare_statevar_ts.Rd |only man/fit_CM.Rd | 38 +- man/plot_decision_table.Rd | 80 +++-- man/plot_statevar_ts.Rd | 4 man/plot_tradeoff.Rd | 20 + man/report.Rd | 3 man/report_CM.Rd | 5 man/smolt_func.Rd | 8 44 files changed, 2416 insertions(+), 1216 deletions(-)
Title: Multi-Stock Assessment
Description: Implementation of a next-generation, multi-stock age-structured fisheries assessment model.
'multiSA' is intended for use in mixed fisheries where stock composition can not be readily identified in
fishery data alone, e.g., from catch and age/length composition. Models can be fitted to genetic data,
e.g., stock composition of catches and close-kin pairs, with seasonal stock availability and movement.
Author: Quang Huynh [aut, cre]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between multiSA versions 0.1.0 dated 2026-02-03 and 0.1.1 dated 2026-03-20
multiSA-0.1.0/multiSA/man/residuals.MSAassess.Rd |only multiSA-0.1.1/multiSA/DESCRIPTION | 10 multiSA-0.1.1/multiSA/MD5 | 43 multiSA-0.1.1/multiSA/NAMESPACE | 13 multiSA-0.1.1/multiSA/NEWS.md | 18 multiSA-0.1.1/multiSA/R/define-s4-class.R | 335 +++---- multiSA-0.1.1/multiSA/R/make-parameters.R | 38 multiSA-0.1.1/multiSA/R/misc.R | 7 multiSA-0.1.1/multiSA/R/model.R | 2 multiSA-0.1.1/multiSA/R/model_int.R | 5 multiSA-0.1.1/multiSA/R/profile.R | 507 +++++----- multiSA-0.1.1/multiSA/R/resid.R | 1064 +++++++++++------------ multiSA-0.1.1/multiSA/R/retrospective.R | 572 ++++++------ multiSA-0.1.1/multiSA/R/rtmb-methods.R | 31 multiSA-0.1.1/multiSA/R/simulate.R | 49 - multiSA-0.1.1/multiSA/README.md | 8 multiSA-0.1.1/multiSA/build/partial.rdb |binary multiSA-0.1.1/multiSA/man/MSAassess-class.Rd | 48 - multiSA-0.1.1/multiSA/man/profile.Rd | 6 multiSA-0.1.1/multiSA/man/report.Rd | 5 multiSA-0.1.1/multiSA/man/residuals.Rd |only multiSA-0.1.1/multiSA/man/retrospective.Rd | 6 multiSA-0.1.1/multiSA/man/simulate.Rd | 3 multiSA-0.1.1/multiSA/man/summary.Rd |only 24 files changed, 1417 insertions(+), 1353 deletions(-)
Title: Probabilistic Knowledge Structures
Description: Fitting and testing probabilistic knowledge structures,
especially the basic local independence model (BLIM, Doignon & Flamagne,
1999) and the simple learning model (SLM), using the minimum discrepancy
maximum likelihood (MDML) method (Heller & Wickelmaier, 2013
<doi:10.1016/j.endm.2013.05.145>).
Author: Florian Wickelmaier [aut, cre],
Juergen Heller [aut],
Julian Mollenhauer [aut],
Pasquale Anselmi [ctb],
Debora de Chiusole [ctb],
Andrea Brancaccio [ctb],
Luca Stefanutti [ctb],
Paul Doerrbecker [ctb]
Maintainer: Florian Wickelmaier <wickelmaier@web.de>
Diff between pks versions 0.6-1 dated 2024-09-16 and 0.7-0 dated 2026-03-20
ChangeLog | 10 ++++++ DESCRIPTION | 16 +++++----- MD5 | 36 ++++++++++++---------- NAMESPACE | 1 R/blim.R | 60 ++++++++++++++++++++++---------------- R/blim_predict.R |only R/conversion.R | 6 ++- R/slm.R | 34 ++++++++------------- build/partial.rdb |binary build/vignette.rds |binary data/DoignonFalmagne7.rda |binary data/Taagepera.rda |binary data/endm.rda |binary data/hsgeometry.rda |only inst/doc/EstimationStepByStep.pdf |binary man/blim.Rd | 5 +-- man/conversion.Rd | 2 - man/endm.Rd | 4 +- man/hsgeometry.Rd |only man/predict.blim.Rd |only man/slm.Rd | 2 - 21 files changed, 101 insertions(+), 75 deletions(-)
Title: A Dipping Sauce for Data Analysis and Visualizations
Description: Works as an "add-on" to packages like 'shiny', 'future', as well as
'rlang', and provides utility functions. Just like dipping sauce adding
flavors to potato chips or pita bread, 'dipsaus' for data analysis and
visualizations adds handy functions and enhancements to popular packages.
The goal is to provide simple solutions that are frequently asked for
online, such as how to synchronize 'shiny' inputs without freezing the app,
or how to get memory size on 'Linux' or 'MacOS' system. The enhancements
roughly fall into these four categories: 1. 'shiny' input widgets; 2.
high-performance computing using the 'future' package; 3.
modify R calls and convert among numbers, strings, and other objects. 4.
utility functions to get system information such like CPU chip-set, memory
limit, etc.
Author: Zhengjia Wang [aut, cre],
John Magnotti [ctb] ,
Xiang Zhang [ctb]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between dipsaus versions 0.3.3 dated 2026-01-09 and 0.3.4 dated 2026-03-20
DESCRIPTION | 6 - MD5 | 17 +-- NEWS.md | 8 + build/vignette.rds |binary inst/doc/r_expr_addons.html | 6 - inst/doc/shiny_customized_widgets.html | 14 +- inst/doc/utility_functions.html | 2 inst/shiny-addons/dipsaus/dipsaus-dipterix-lib.js | 14 +- src/utils.cpp | 108 ++++++++++++++++------ tests/testthat/test-missing-dots.R |only 10 files changed, 121 insertions(+), 54 deletions(-)
Title: Publication-Ready Summary Tables and Forest Plots
Description: A comprehensive framework for descriptive statistics and regression
analysis that produces publication-ready tables and forest plots. Provides a
unified interface from descriptive statistics through multivariable modeling,
with support for linear models, generalized linear models, Cox proportional
hazards, and mixed-effects models. Also includes univariable screening,
multivariate regression, model comparison, and export to multiple formats
including PDF, DOCX, PPTX, 'LaTeX', HTML, and RTF. Built on 'data.table'
for computational efficiency.
Author: Paul Hsin-ti McClelland [aut, cre, cph]
Maintainer: Paul Hsin-ti McClelland <PaulHMcClelland@protonmail.com>
Diff between summata versions 0.11.3 dated 2026-03-08 and 0.11.4 dated 2026-03-20
DESCRIPTION | 6 MD5 | 79 - NEWS.md | 10 R/coxforest.R | 2 R/fit.R | 136 ++ R/forest_utils.R | 33 R/fullfit.R | 65 + R/glmforest.R | 2 R/globals.R | 4 R/lmforest.R | 2 R/m2dt.R | 115 ++ R/multifit.R | 100 +- R/uniscreen.R | 34 README.md | 18 inst/doc/advanced_workflows.html | 130 +- inst/doc/installation_setup.Rmd | 4 inst/doc/installation_setup.html | 6 inst/doc/model_comparison.html | 4 inst/doc/multivariate_regression.html | 58 - inst/doc/regression_modeling.R | 86 + inst/doc/regression_modeling.Rmd | 136 +- inst/doc/regression_modeling.html | 1159 +++++++++++++------------ man/extract_predictor_effects.Rd | 3 man/figures/summata.png |binary man/figures/summata.svg | 40 man/fit.Rd | 103 +- man/fullfit.Rd | 36 man/get_cached_confint.Rd |only man/m2dt.Rd | 34 man/multifit.Rd | 20 man/uniscreen.Rd | 20 tests/benchmarks/benchmarks.R | 77 + tests/testthat/test_fit.R | 133 ++ tests/testthat/test_fullfit.R | 147 +++ tests/testthat/test_m2dt.R | 141 +++ tests/testthat/test_multivariate.R | 89 + vignettes/articles/benchmarks.Rmd | 209 ++-- vignettes/articles/feature_comparison.Rmd | 6 vignettes/articles/statistical_foundations.Rmd | 69 + vignettes/installation_setup.Rmd | 4 vignettes/regression_modeling.Rmd | 136 +- 41 files changed, 2407 insertions(+), 1049 deletions(-)
Title: Docorate (Decorate + Output) Displays
Description: A framework for creating production outputs. Users can frame a table, listing, or figure with headers and footers and save to an output file. Stores an intermediate 'docorator' object for reproducibility and rendering to multiple output types.
Author: Becca Krouse [aut, cre],
Shannon Haughton [aut],
Seongbin Hong [aut],
Dragoș Moldovan-Gruenfeld [aut],
GlaxoSmithKline Research & Development Limited [cph, fnd]
Maintainer: Becca Krouse <becca.z.krouse@gsk.com>
Diff between docorator versions 0.5.2 dated 2026-01-23 and 0.6.0 dated 2026-03-20
docorator-0.5.2/docorator/man/create_chunk.Rd |only docorator-0.6.0/docorator/DESCRIPTION | 9 docorator-0.6.0/docorator/MD5 | 48 - docorator-0.6.0/docorator/NAMESPACE | 7 docorator-0.6.0/docorator/NEWS.md | 10 docorator-0.6.0/docorator/R/docorate.R | 7 docorator-0.6.0/docorator/R/render.R | 8 docorator-0.6.0/docorator/R/utils.R | 44 - docorator-0.6.0/docorator/R/utils_fancyhdr.R | 119 ++ docorator-0.6.0/docorator/R/utils_gt.R | 4 docorator-0.6.0/docorator/README.md | 15 docorator-0.6.0/docorator/inst/doc/display_sizing.html | 440 +++++----- docorator-0.6.0/docorator/inst/doc/headers_footers.Rmd | 4 docorator-0.6.0/docorator/inst/doc/headers_footers.html | 7 docorator-0.6.0/docorator/inst/template/template.Rmd | 14 docorator-0.6.0/docorator/inst/template/template.qmd | 11 docorator-0.6.0/docorator/man/create_chunks_all.Rd |only docorator-0.6.0/docorator/man/render_pdf.Rd | 5 docorator-0.6.0/docorator/tests/testthat/_snaps/prep_obj_tex.md | 2 docorator-0.6.0/docorator/tests/testthat/_snaps/utils.md | 12 docorator-0.6.0/docorator/tests/testthat/_snaps/utils_fancyhdr.md | 10 docorator-0.6.0/docorator/tests/testthat/test-render.R | 41 docorator-0.6.0/docorator/tests/testthat/test-utils.R | 24 docorator-0.6.0/docorator/tests/testthat/test-utils_fancyhdr.R | 152 +++ docorator-0.6.0/docorator/tests/testthat/test_docorate.R | 24 docorator-0.6.0/docorator/vignettes/headers_footers.Rmd | 4 26 files changed, 692 insertions(+), 329 deletions(-)
Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] ,
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brueggemann [ctb] ,
Christophe Dervieux [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.56 dated 2026-01-18 and 0.57 dated 2026-03-20
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 2 ++ R/cran.R | 10 +++++++--- R/github.R | 14 ++++++++++++++ R/json.R | 11 +++++++---- R/markdown.R | 29 ++++++++++++++++++++++++----- R/record.R | 5 +++-- build/vignette.rds |binary inst/doc/xfun.Rmd | 2 +- inst/doc/xfun.html | 14 +++++++------- man/submit_cran.Rd | 9 ++++++--- man/tabset.Rd | 19 +++++++++++++++++-- man/tojson.Rd | 10 ++++++---- tests/test-cran/test-json.R | 3 +-- vignettes/xfun.Rmd | 2 +- 16 files changed, 114 insertions(+), 52 deletions(-)
Title: A Calculator for Melting Temperature of Nucleic Acid Sequences
Description: A comprehensive R package for calculating melting temperatures of nucleic acid sequences.
Implements three calculation methods:
1. Wallace rule (Thein & Wallace, 1986)
2. Empirical formulas based on GC content (Marmur, 1962; Schildkraut, 2010; Wetmur, 1991;
Untergasser, 2012; von Ahsen, 2001)
3. Nearest neighbor thermodynamics (Breslauer, 1986; Sugimoto, 1996; Allawi, 1998;
SantaLucia, 2004; Freier, 1986; Xia, 1998; Chen, 2012; Bommarito, 2000; Turner, 2010;
Sugimoto, 1995; Allawi, 1997; Santalucia, 2005)
Includes corrections for:
- Salt ions (SantaLucia, 1996, 1998; Owczarzy, 2004, 2008)
- Chemical compounds (dimethyl sulfoxide, formamide)
Supports both direct sequence input and FASTA file input.
Author: Junhui Li [cre, aut]
Maintainer: Junhui Li <ljh.biostat@gmail.com>
Diff between TmCalculator versions 1.0.3 dated 2022-02-20 and 1.0.4 dated 2026-03-20
TmCalculator-1.0.3/TmCalculator/R/GC.R |only TmCalculator-1.0.3/TmCalculator/R/Tm_GC.R |only TmCalculator-1.0.3/TmCalculator/R/Tm_NN.R |only TmCalculator-1.0.3/TmCalculator/R/Tm_Wallace.R |only TmCalculator-1.0.3/TmCalculator/R/c2s.R |only TmCalculator-1.0.3/TmCalculator/R/check_filter.R |only TmCalculator-1.0.3/TmCalculator/R/chem_correction.R |only TmCalculator-1.0.3/TmCalculator/R/complement.R |only TmCalculator-1.0.3/TmCalculator/R/s2c.R |only TmCalculator-1.0.3/TmCalculator/man/GC.Rd |only TmCalculator-1.0.3/TmCalculator/man/Tm_GC.Rd |only TmCalculator-1.0.3/TmCalculator/man/Tm_NN.Rd |only TmCalculator-1.0.3/TmCalculator/man/Tm_Wallace.Rd |only TmCalculator-1.0.3/TmCalculator/man/check_filter.Rd |only TmCalculator-1.0.3/TmCalculator/man/chem_correction.Rd |only TmCalculator-1.0.3/TmCalculator/man/complement.Rd |only TmCalculator-1.0.4/TmCalculator/DESCRIPTION | 45 + TmCalculator-1.0.4/TmCalculator/LICENSE |only TmCalculator-1.0.4/TmCalculator/MD5 | 82 ++ TmCalculator-1.0.4/TmCalculator/NAMESPACE | 83 ++- TmCalculator-1.0.4/TmCalculator/R/TmCalculator-package.R |only TmCalculator-1.0.4/TmCalculator/R/chem_correct.R |only TmCalculator-1.0.4/TmCalculator/R/gc.R |only TmCalculator-1.0.4/TmCalculator/R/generate_complement.R |only TmCalculator-1.0.4/TmCalculator/R/plot_tm_genome_tracks.R |only TmCalculator-1.0.4/TmCalculator/R/plot_tm_heatmap.R |only TmCalculator-1.0.4/TmCalculator/R/plot_tm_interactive.R |only TmCalculator-1.0.4/TmCalculator/R/plot_tm_karyotype.R |only TmCalculator-1.0.4/TmCalculator/R/print.TmCalculator.R | 2 TmCalculator-1.0.4/TmCalculator/R/salt_correction.R | 275 +++++----- TmCalculator-1.0.4/TmCalculator/R/thermodynamic_gc_params.R |only TmCalculator-1.0.4/TmCalculator/R/thermodynamic_nn_params.R |only TmCalculator-1.0.4/TmCalculator/R/tm_calculate.R |only TmCalculator-1.0.4/TmCalculator/R/tm_gc.R |only TmCalculator-1.0.4/TmCalculator/R/tm_nn.R |only TmCalculator-1.0.4/TmCalculator/R/tm_wallace.R |only TmCalculator-1.0.4/TmCalculator/R/to_genomic_ranges.R |only TmCalculator-1.0.4/TmCalculator/R/utils.R |only TmCalculator-1.0.4/TmCalculator/README.md |only TmCalculator-1.0.4/TmCalculator/build |only TmCalculator-1.0.4/TmCalculator/data |only TmCalculator-1.0.4/TmCalculator/inst |only TmCalculator-1.0.4/TmCalculator/man/TmCalculator-package.Rd |only TmCalculator-1.0.4/TmCalculator/man/c2s.Rd | 8 TmCalculator-1.0.4/TmCalculator/man/check_filter_seq.Rd |only TmCalculator-1.0.4/TmCalculator/man/chem_correct.Rd |only TmCalculator-1.0.4/TmCalculator/man/coor_to_genomic_ranges.Rd |only TmCalculator-1.0.4/TmCalculator/man/fa_to_genomic_ranges.Rd |only TmCalculator-1.0.4/TmCalculator/man/figures |only TmCalculator-1.0.4/TmCalculator/man/gc.Rd |only TmCalculator-1.0.4/TmCalculator/man/generate_complement.Rd |only TmCalculator-1.0.4/TmCalculator/man/plot_tm_genome_tracks.Rd |only TmCalculator-1.0.4/TmCalculator/man/plot_tm_heatmap.Rd |only TmCalculator-1.0.4/TmCalculator/man/plot_tm_interactive.Rd |only TmCalculator-1.0.4/TmCalculator/man/plot_tm_karyotype.Rd |only TmCalculator-1.0.4/TmCalculator/man/s2c.Rd | 8 TmCalculator-1.0.4/TmCalculator/man/salt_correction.Rd | 91 +-- TmCalculator-1.0.4/TmCalculator/man/thermodynamic_gc_params.Rd |only TmCalculator-1.0.4/TmCalculator/man/thermodynamic_nn_params.Rd |only TmCalculator-1.0.4/TmCalculator/man/tm_calculate.Rd |only TmCalculator-1.0.4/TmCalculator/man/tm_gc.Rd |only TmCalculator-1.0.4/TmCalculator/man/tm_nn.Rd |only TmCalculator-1.0.4/TmCalculator/man/tm_wallace.Rd |only TmCalculator-1.0.4/TmCalculator/man/to_genomic_ranges.Rd |only TmCalculator-1.0.4/TmCalculator/man/vec_to_genomic_ranges.Rd |only TmCalculator-1.0.4/TmCalculator/tests |only TmCalculator-1.0.4/TmCalculator/vignettes |only 67 files changed, 357 insertions(+), 237 deletions(-)
Title: 'R' Bindings for 'TMB'
Description: Native 'R' interface to 'TMB' (Template Model Builder) so models can be written entirely in 'R' rather than 'C++'. Automatic differentiation, to any order, is available for a rich subset of 'R' features, including linear algebra for dense and sparse matrices, complex arithmetic, Fast Fourier Transform, probability distributions and special functions. 'RTMB' provides easy access to model fitting and validation following the principles of Kristensen, K., Nielsen, A., Berg, C. W., Skaug, H., & Bell, B. M. (2016) <DOI:10.18637/jss.v070.i05> and Thygesen, U.H., Albertsen, C.M., Berg, C.W. et al. (2017) <DOI:10.1007/s10651-017-0372-4>.
Author: Kasper Kristensen [aut, cre]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between RTMB versions 1.8 dated 2025-10-14 and 1.9 dated 2026-03-20
DESCRIPTION | 11 - MD5 | 85 +++++++----- NAMESPACE | 10 + NEWS |only R/00roxygen.R | 3 R/RcppExports.R | 44 +++++- R/adcomplex.R | 2 R/adjoint.R | 8 + R/advector.R | 69 +++++++--- R/branching.R |only R/distributions.R | 17 -- R/integrate.R |only R/methods.R | 190 +++++++++++++++++++++++++-- R/poshess.R | 2 R/uniroot.R |only build/vignette.rds |binary inst/doc/RTMB-advanced.R | 25 +++ inst/doc/RTMB-advanced.html | 255 +++++++++++++++++++++---------------- inst/doc/RTMB-advanced.rmd | 75 +++++++--- inst/doc/RTMB-introduction.html | 6 inst/doc/RTMB-tips.R |only inst/doc/RTMB-tips.html |only inst/doc/RTMB-tips.rmd |only inst/include/CallRTMB.hpp | 21 +-- inst/include/config.h | 3 inst/tinytest/test-distributions.R | 42 ++++++ inst/tinytest/test-factorize.R | 18 +- inst/tinytest/test-integrate.R |only inst/tinytest/test-pnorm.R |only inst/tinytest/test-ridge_correct.R |only man/ADapply.Rd | 22 +-- man/ADconstruct.Rd | 12 - man/ADintegrate.Rd |only man/ADoverload.Rd | 12 + man/ADuniroot.Rd |only man/ADvector.Rd | 34 ++++ man/Distributions.Rd | 84 ++++++++++-- man/TMB-interface.Rd | 14 -- src/RTMB.cpp | 28 ++++ src/RTMB.h | 8 + src/RTMB_tape.cpp | 62 ++++++++ src/RcppExports.cpp | 143 ++++++++++++++++++-- src/branching.cpp |only src/config.h | 3 src/distributions.cpp | 47 ++++-- src/integrate.cpp |only src/math.cpp | 53 +++++-- src/math_complex.cpp | 1 src/pnorm.cpp |only src/uniroot.cpp |only vignettes/RTMB-advanced.rmd | 75 +++++++--- vignettes/RTMB-tips.rmd |only 52 files changed, 1107 insertions(+), 377 deletions(-)
Title: Tidy Presentation of Clinical Reporting
Description: Streamlined statistical reporting in 'Rmarkdown' environments.
Facilitates the automated reporting of descriptive statistics, multiple
univariate models, multivariable models and tables combining these outputs.
Plotting functions include customisable survival curves, forest plots from
logistic and ordinal regression and bivariate comparison plots.
Author: Lisa Avery [cre, aut] ,
Ryan Del Bel [aut],
Osvaldo Espin-Garcia [aut],
Katherine Lajkosz [aut] ,
Clarina Ong [aut],
Tyler Pittman [aut] ,
Anna Santiago [aut] ,
Yanning Wang [ctr],
Jessica Weiss [aut],
Wei Xu [aut]
Maintainer: Lisa Avery <lisa.avery@uhn.ca>
Diff between reportRmd versions 0.1.1 dated 2025-01-24 and 0.1.3 dated 2026-03-20
reportRmd-0.1.1/reportRmd/data/uvmodels.rda |only reportRmd-0.1.1/reportRmd/man/addspace.Rd |only reportRmd-0.1.1/reportRmd/man/cap.Rd |only reportRmd-0.1.1/reportRmd/man/formatp.Rd |only reportRmd-0.1.1/reportRmd/man/lbld.Rd |only reportRmd-0.1.1/reportRmd/man/lpvalue.Rd |only reportRmd-0.1.1/reportRmd/man/niceNum.Rd |only reportRmd-0.1.1/reportRmd/man/nicename.Rd |only reportRmd-0.1.1/reportRmd/man/pvalue.Rd |only reportRmd-0.1.1/reportRmd/man/rmds.Rd |only reportRmd-0.1.1/reportRmd/man/sanitizestr.Rd |only reportRmd-0.1.1/reportRmd/man/uvmodels.Rd |only reportRmd-0.1.1/reportRmd/man/uvsum.Rd |only reportRmd-0.1.1/reportRmd/man/xvar_function.default.Rd |only reportRmd-0.1.1/reportRmd/vignettes/i1.png |only reportRmd-0.1.1/reportRmd/vignettes/i2.png |only reportRmd-0.1.1/reportRmd/vignettes/libs |only reportRmd-0.1.1/reportRmd/vignettes/overview.qmd |only reportRmd-0.1.1/reportRmd/vignettes/some_SPSS_data.rda |only reportRmd-0.1.1/reportRmd/vignettes/usingLabels.docx |only 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reportRmd-0.1.3/reportRmd/R/sysdata.rda |binary reportRmd-0.1.3/reportRmd/README.md | 1840 +- reportRmd-0.1.3/reportRmd/inst/doc/reportRmd.R | 84 reportRmd-0.1.3/reportRmd/inst/doc/reportRmd.Rmd | 150 reportRmd-0.1.3/reportRmd/inst/doc/reportRmd.html | 1515 + reportRmd-0.1.3/reportRmd/man/GVIF.Rd |only reportRmd-0.1.3/reportRmd/man/add_censor_marks.Rd |only reportRmd-0.1.3/reportRmd/man/add_cif_hazard_ratios.Rd |only reportRmd-0.1.3/reportRmd/man/add_confidence_bands.Rd |only reportRmd-0.1.3/reportRmd/man/add_km_hazard_ratios.Rd |only reportRmd-0.1.3/reportRmd/man/add_median_lines.Rd |only reportRmd-0.1.3/reportRmd/man/add_median_text.Rd |only reportRmd-0.1.3/reportRmd/man/add_set_time_lines.Rd |only reportRmd-0.1.3/reportRmd/man/add_set_time_text.Rd |only reportRmd-0.1.3/reportRmd/man/add_statistical_tests.Rd |only reportRmd-0.1.3/reportRmd/man/apply_scales_and_guides.Rd |only reportRmd-0.1.3/reportRmd/man/autoreg.Rd |only reportRmd-0.1.3/reportRmd/man/break_function.Rd |only 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Title: Optimal Pairing and Matching via Linear Assignment
Description: Solves optimal pairing and matching problems using linear assignment
algorithms. Provides implementations of the Hungarian method (Kuhn 1955)
<doi:10.1002/nav.3800020109>, Jonker-Volgenant shortest path algorithm
(Jonker and Volgenant 1987) <doi:10.1007/BF02278710>, Auction algorithm
(Bertsekas 1988) <doi:10.1007/BF02186476>, cost-scaling
(Goldberg and Kennedy 1995) <doi:10.1007/BF01585996>, scaling algorithms
(Gabow and Tarjan 1989) <doi:10.1137/0218069>, push-relabel (Goldberg and
Tarjan 1988) <doi:10.1145/48014.61051>, and Sinkhorn entropy-regularized
transport (Cuturi 2013) <doi:10.48550/arxiv.1306.0895>. Designed for
matching plots, sites, samples, or any pairwise optimization problem.
Supports rectangular matrices, forbidden assignments, data frame inputs,
batch solving, k-best solutions, and pixel-level image morphing for
visualization. Includes automatic preprocessing with variable health
checks, multiple scaling methods (standardized, [...truncated...]
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between couplr versions 1.2.0 dated 2026-03-20 and 1.2.1 dated 2026-03-20
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 11 +++++++++++ R/morph_pixel.R | 6 ++++++ inst/doc/matching-workflows.html | 8 ++++---- inst/doc/troubleshooting.html | 2 +- tests/testthat/test-morph-coverage-boost.R | 2 ++ tests/testthat/test-morph-pixel.R | 3 +++ 8 files changed, 37 insertions(+), 15 deletions(-)
Title: A Package for Biometrics and Modelling
Description: A system of functions and datasets to carry out quantitative analyses in the biological
sciences. The package facilitates data management, exploratory analyses, and model assessment.
Although it currently focuses on forest ecology, silviculture and decision-making, most of
the package functions are applicable across several disciplines, including economics,
environmental science, and healthcare.
Author: Christian Salas-Eljatib [aut, cre] ,
Nicolas Campos [ctb] ,
Marcos Marivil [ctb]
Maintainer: Christian Salas-Eljatib <cseljatib@gmail.com>
Diff between biometrics versions 1.0.3 dated 2026-03-03 and 1.0.4 dated 2026-03-20
biometrics-1.0.3/biometrics/R/data-densidadcanelo2.r |only biometrics-1.0.3/biometrics/data/densidadcanelo2.rda |only biometrics-1.0.3/biometrics/man/densidadcanelo2.Rd |only biometrics-1.0.4/biometrics/DESCRIPTION | 6 biometrics-1.0.4/biometrics/MD5 | 129 ++++++++++--------- biometrics-1.0.4/biometrics/NAMESPACE | 3 biometrics-1.0.4/biometrics/R/asymregfx.r | 21 +-- biometrics-1.0.4/biometrics/R/bertarich.r | 20 +- biometrics-1.0.4/biometrics/R/curtis.r | 17 +- biometrics-1.0.4/biometrics/R/curtisori.r | 17 +- biometrics-1.0.4/biometrics/R/data-thinningtrial.r |only biometrics-1.0.4/biometrics/R/data-thinningtrial2.r |only biometrics-1.0.4/biometrics/R/data-treevolruca2.r | 2 biometrics-1.0.4/biometrics/R/expogral.r |only biometrics-1.0.4/biometrics/R/expogralfull.r |only biometrics-1.0.4/biometrics/R/gompertz.r | 19 +- biometrics-1.0.4/biometrics/R/gompertzm.r | 19 +- biometrics-1.0.4/biometrics/R/hossfeld.r | 19 +- biometrics-1.0.4/biometrics/R/invfx.r | 19 +- biometrics-1.0.4/biometrics/R/lang.r | 17 +- biometrics-1.0.4/biometrics/R/logistic.r | 19 +- biometrics-1.0.4/biometrics/R/logisticm.r | 19 +- biometrics-1.0.4/biometrics/R/meyer.r | 17 +- biometrics-1.0.4/biometrics/R/mmenten.r | 17 +- biometrics-1.0.4/biometrics/R/naslund.r | 17 +- biometrics-1.0.4/biometrics/R/ogawa.r | 17 +- biometrics-1.0.4/biometrics/R/power.r | 17 +- biometrics-1.0.4/biometrics/R/prodan.r | 19 +- biometrics-1.0.4/biometrics/R/ratkow.r | 19 +- biometrics-1.0.4/biometrics/R/schnute.r | 19 +- biometrics-1.0.4/biometrics/R/schuma.r | 17 +- biometrics-1.0.4/biometrics/R/sibbesen.r | 19 +- biometrics-1.0.4/biometrics/R/stage.r | 19 +- biometrics-1.0.4/biometrics/R/standtab.r |only biometrics-1.0.4/biometrics/R/strand.r | 17 +- biometrics-1.0.4/biometrics/R/strandg.r | 19 +- biometrics-1.0.4/biometrics/R/weibfx.r | 19 +- biometrics-1.0.4/biometrics/R/wykoff.r | 17 +- biometrics-1.0.4/biometrics/data/thinningtrial.rda |only biometrics-1.0.4/biometrics/data/thinningtrial2.rda |only biometrics-1.0.4/biometrics/inst/CITATION | 4 biometrics-1.0.4/biometrics/man/asymreg.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/bertarich.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/curtis.fx.Rd | 14 +- biometrics-1.0.4/biometrics/man/curtisori.fx.Rd | 14 +- biometrics-1.0.4/biometrics/man/expogral.fx.Rd |only biometrics-1.0.4/biometrics/man/expogralfull.fx.Rd |only biometrics-1.0.4/biometrics/man/gompertz.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/gompertzm.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/hossfeld.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/inv.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/lang.fx.Rd | 14 +- biometrics-1.0.4/biometrics/man/logist.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/logistm.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/meyer.fx.Rd | 14 +- biometrics-1.0.4/biometrics/man/mmenten.fx.Rd | 14 +- biometrics-1.0.4/biometrics/man/naslund.fx.Rd | 14 +- biometrics-1.0.4/biometrics/man/ogawa.fx.Rd | 12 - biometrics-1.0.4/biometrics/man/power.fx.Rd | 14 +- biometrics-1.0.4/biometrics/man/prodan.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/ratkow.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/schnute.fx.Rd | 24 +-- biometrics-1.0.4/biometrics/man/schum.fx.Rd | 14 +- biometrics-1.0.4/biometrics/man/sibbesen.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/stage.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/standtab.Rd |only biometrics-1.0.4/biometrics/man/strand.fx.Rd | 14 +- biometrics-1.0.4/biometrics/man/strandg.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/thinningtrial.Rd |only biometrics-1.0.4/biometrics/man/thinningtrial2.Rd |only biometrics-1.0.4/biometrics/man/treevolruca2.Rd | 2 biometrics-1.0.4/biometrics/man/weib.fx.Rd | 16 +- biometrics-1.0.4/biometrics/man/wykoff.fx.Rd | 14 +- 73 files changed, 501 insertions(+), 520 deletions(-)
Title: Interface to the Global Biodiversity Information Facility API
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility (GBIF;
<https://www.gbif.org/developer/summary>). GBIF is a database
of species occurrence records from sources all over the globe.
rgbif includes functions for searching for taxonomic names,
retrieving information on data providers, getting species occurrence
records, getting counts of occurrence records, and using the GBIF
tile map service to make rasters summarizing huge amounts of data.
Author: Scott Chamberlain [aut] ,
Damiano Oldoni [aut] ,
Vijay Barve [ctb] ,
Peter Desmet [ctb] ,
Laurens Geffert [ctb],
Dan Mcglinn [ctb] ,
Karthik Ram [ctb] ,
rOpenSci [fnd] ,
John Waller [aut, cre]
Maintainer: John Waller <jwaller@gbif.org>
Diff between rgbif versions 3.8.4 dated 2025-11-13 and 3.8.5 dated 2026-03-20
DESCRIPTION | 9 MD5 | 94 ++++---- NAMESPACE | 7 NEWS.md | 30 ++ R/bbox.R | 50 ++++ R/check_wkt.r | 78 ++++++ R/download_predicate_dsl.R | 58 ++++- R/name_backbone.r | 16 + R/name_backbone_checklist.R | 2 R/occ_data.R | 2 R/occ_download.R | 31 ++ R/occ_download_stats.R |only man/download_predicate_dsl.Rd | 16 + man/occ_data.Rd | 2 man/occ_download.Rd | 12 + man/occ_download_cached.Rd | 6 man/occ_download_cancel.Rd | 6 man/occ_download_dataset_activity.Rd | 6 man/occ_download_datasets.Rd | 6 man/occ_download_get.Rd | 6 man/occ_download_import.Rd | 6 man/occ_download_list.Rd | 6 man/occ_download_meta.Rd | 6 man/occ_download_queue.Rd | 6 man/occ_download_stats.Rd |only man/occ_download_stats_dataset.Rd |only man/occ_download_stats_dataset_records.Rd |only man/occ_download_stats_export.Rd |only man/occ_download_stats_source.Rd |only man/occ_download_stats_user_country.Rd |only man/occ_download_wait.Rd | 6 man/occ_search.Rd | 2 tests/fixtures/name_backbone.yml | 40 +-- tests/fixtures/name_backbone_acceptedUsageKey.yml |only tests/fixtures/name_backbone_verbose_true.yml | 10 tests/fixtures/occ_download_1.yml | 10 tests/fixtures/occ_download_10.yml |only tests/fixtures/occ_download_2.yml | 12 - tests/fixtures/occ_download_3.yml | 10 tests/fixtures/occ_download_4.yml | 10 tests/fixtures/occ_download_5.yml | 10 tests/fixtures/occ_download_6.yml | 10 tests/fixtures/occ_download_7.yml | 10 tests/fixtures/occ_download_8.yml | 10 tests/fixtures/occ_download_9.yml |only tests/fixtures/occ_download_stats.yml |only tests/fixtures/occ_download_stats_dataset.yml |only tests/fixtures/occ_download_stats_dataset_records.yml |only tests/fixtures/occ_download_stats_source.yml |only tests/fixtures/occ_download_stats_user_country.yml |only tests/testthat/test-check_wkt.r | 67 +++++ tests/testthat/test-download_parsing.R | 203 ++++++++++-------- tests/testthat/test-name_backbone.r | 11 tests/testthat/test-name_backbone_checklist.R | 68 ++++-- tests/testthat/test-occ_download.R | 42 +++ tests/testthat/test-occ_download_stats.R |only 56 files changed, 743 insertions(+), 249 deletions(-)
Title: Geocoding with the 'ArcGIS' REST API Service
Description: Lite interface for finding locations of addresses or
businesses around the world using the 'ArcGIS' REST API service
<https://developers.arcgis.com/rest/geocode/api-reference/overview-world-geocoding-service.htm>.
Address text can be converted to location candidates and a location
can be converted into an address. No API key required.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between arcgeocoder versions 0.3.0 dated 2026-01-15 and 0.4.0 dated 2026-03-20
arcgeocoder-0.3.0/arcgeocoder/inst/doc/arcgeocoder.Rmd |only arcgeocoder-0.3.0/arcgeocoder/inst/doc/feature-types.Rmd |only arcgeocoder-0.3.0/arcgeocoder/vignettes/arcgeocoder.Rmd |only arcgeocoder-0.3.0/arcgeocoder/vignettes/feature-types.Rmd |only arcgeocoder-0.4.0/arcgeocoder/DESCRIPTION | 12 arcgeocoder-0.4.0/arcgeocoder/MD5 | 58 arcgeocoder-0.4.0/arcgeocoder/NEWS.md | 4 arcgeocoder-0.4.0/arcgeocoder/R/arc_geo.R | 40 arcgeocoder-0.4.0/arcgeocoder/R/arc_geo_categories.R | 606 ++++----- arcgeocoder-0.4.0/arcgeocoder/R/arc_geo_multi.R | 541 ++++---- arcgeocoder-0.4.0/arcgeocoder/R/arc_reverse_geo.R | 22 arcgeocoder-0.4.0/arcgeocoder/R/arcgeocoder_check_access.R | 1 arcgeocoder-0.4.0/arcgeocoder/R/data.R | 343 ++--- arcgeocoder-0.4.0/arcgeocoder/README.md | 109 - arcgeocoder-0.4.0/arcgeocoder/build/vignette.rds |binary arcgeocoder-0.4.0/arcgeocoder/data/arc_categories.rda |binary arcgeocoder-0.4.0/arcgeocoder/data/arc_spatial_references.rda |binary arcgeocoder-0.4.0/arcgeocoder/inst/REFERENCES.bib | 10 arcgeocoder-0.4.0/arcgeocoder/inst/WORDLIST | 4 arcgeocoder-0.4.0/arcgeocoder/inst/doc/arcgeocoder.html | 619 +++------ arcgeocoder-0.4.0/arcgeocoder/inst/doc/arcgeocoder.qmd |only arcgeocoder-0.4.0/arcgeocoder/inst/doc/feature-types.html | 626 +++------- arcgeocoder-0.4.0/arcgeocoder/inst/doc/feature-types.qmd |only arcgeocoder-0.4.0/arcgeocoder/inst/schemaorg.json | 4 arcgeocoder-0.4.0/arcgeocoder/man/arc_categories.Rd | 1 arcgeocoder-0.4.0/arcgeocoder/man/arc_geo.Rd | 49 arcgeocoder-0.4.0/arcgeocoder/man/arc_geo_categories.Rd | 395 +++--- arcgeocoder-0.4.0/arcgeocoder/man/arc_geo_multi.Rd | 39 arcgeocoder-0.4.0/arcgeocoder/man/arc_reverse_geo.Rd | 18 arcgeocoder-0.4.0/arcgeocoder/man/chunks/out1.Rmd | 18 arcgeocoder-0.4.0/arcgeocoder/tests/testthat/test-arc_geo_multi.R | 524 ++++---- arcgeocoder-0.4.0/arcgeocoder/vignettes/REFERENCES.bib | 10 arcgeocoder-0.4.0/arcgeocoder/vignettes/arcgeocoder.qmd |only arcgeocoder-0.4.0/arcgeocoder/vignettes/feature-types.qmd |only 34 files changed, 1852 insertions(+), 2201 deletions(-)
Title: MCMC Sampling from 'TMB' Model Object using 'Stan'
Description: Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) <DOI:10.1371/journal.pone.0197954>.
Author: Kasper Kristensen [aut, cre]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between tmbstan versions 1.0.91 dated 2023-08-26 and 1.1.0 dated 2026-03-20
tmbstan-1.0.91/tmbstan/inst/model.hpp |only tmbstan-1.0.91/tmbstan/src/include/model.hpp |only tmbstan-1.1.0/tmbstan/DESCRIPTION | 19 +++++++++------ tmbstan-1.1.0/tmbstan/MD5 | 10 +++----- tmbstan-1.1.0/tmbstan/R/tmbstan.R | 33 ++++++++++++++++++--------- tmbstan-1.1.0/tmbstan/man/tmbstan.Rd | 22 +++++++++--------- tmbstan-1.1.0/tmbstan/tools/autogen.R | 4 +-- 7 files changed, 52 insertions(+), 36 deletions(-)
Title: Multidimensional Penalized Splines for (Excess) Hazard Models,
Relative Mortality Ratio Models and Marginal Intensity Models
Description: Fits (excess) hazard, relative mortality ratio or marginal intensity models with multidimensional penalized splines allowing for
time-dependent effects, non-linear effects and interactions between several continuous covariates. In survival and net survival analysis, in addition to modelling the effect of time (via the baseline hazard), one has often to deal with several continuous covariates and model their functional forms, their time-dependent effects, and their interactions. Model specification becomes therefore a complex problem and penalized regression splines represent an appealing solution to that problem as splines offer the required flexibility while penalization limits overfitting issues. Current implementations of penalized survival models can be slow or unstable and sometimes lack some key features like taking into account expected mortality to provide net survival and excess hazard estimates. In contrast, survPen provides an automated, fast, and stable implementation (than [...truncated...]
Author: Mathieu Fauvernier [aut, cre],
Laurent Roche [aut],
Laurent Remontet [aut],
Zoe Uhry [ctb],
Nadine Bossard [ctb],
Elsa Coz [ctb]
Maintainer: Mathieu Fauvernier <mathieu.fauvernier@gmail.com>
Diff between survPen versions 2.0.2 dated 2025-03-08 and 2.0.3 dated 2026-03-20
survPen-2.0.2/survPen/R/survPenV2_02.r |only survPen-2.0.3/survPen/DESCRIPTION | 6 - survPen-2.0.3/survPen/MD5 | 10 - survPen-2.0.3/survPen/NEWS | 7 + survPen-2.0.3/survPen/R/survPenV2_03.r |only survPen-2.0.3/survPen/build/vignette.rds |binary survPen-2.0.3/survPen/inst/doc/survival_analysis_with_survPen.html | 57 ++++------ 7 files changed, 40 insertions(+), 40 deletions(-)
Title: Seamless Access to World Bank International Debt Statistics
(IDS)
Description: Access and analyze the World Bank's International Debt Statistics
(IDS) <https://www.worldbank.org/en/programs/debt-statistics/ids>.
IDS provides creditor-debtor relationships between countries, regions, and
institutions. 'wbids' enables users to download, process and work with IDS
series across multiple geographies, counterparts, and time periods.
Author: Teal Emery [aut, cre],
Teal Insights [cph],
Christoph Scheuch [aut] ,
Christopher Smith [ctb]
Maintainer: Teal Emery <lte@tealinsights.com>
Diff between wbids versions 1.1.4 dated 2026-03-10 and 1.1.5 dated 2026-03-20
DESCRIPTION | 14 MD5 | 39 NEWS.md | 80 - R/ids_bulk.R | 50 - R/ids_bulk_files.R | 1 man/ids_bulk.Rd | 2 man/ids_bulk_files.Rd | 2 man/ids_bulk_series.Rd | 2 man/ids_get_ed.Rd | 2 tests/testthat/helper.R |only tests/testthat/test-ids_bulk.R | 689 +++++++------ tests/testthat/test-ids_bulk_files.R | 24 tests/testthat/test-ids_bulk_series.R | 30 tests/testthat/test-ids_get.R | 1336 ++++++++++++++------------- tests/testthat/test-ids_get_ed.R | 20 tests/testthat/test-ids_list_counterparts.R | 20 tests/testthat/test-ids_list_entities.R | 48 tests/testthat/test-ids_list_series.R | 18 tests/testthat/test-ids_list_series_topics.R | 16 tests/testthat/test-perform_request.R | 161 +-- tests/testthat/test-read_bulk_info.R | 24 21 files changed, 1370 insertions(+), 1208 deletions(-)
Title: Compact Inline Widgets for 'shiny' Apps
Description: Provides a basic set of compact widgets for 'shiny' apps which
occupy less space and can appear inline with surrounding text.
Author: Nick Davies [aut, cre]
Maintainer: Nick Davies <nicholas.davies@lshtm.ac.uk>
Diff between inshiny versions 0.1.2 dated 2026-02-14 and 0.1.3 dated 2026-03-20
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NEWS.md | 13 +++++++++++++ R/number.R | 25 ++++++++++++++++--------- inst/www/inshiny/inshiny.css | 13 ++++++++++++- man/inline_number.Rd | 7 ++++++- tests/testthat/_snaps/shiny-1.12.0/action.md | 13 ------------- tests/testthat/_snaps/shiny-1.13.0 |only tests/testthat/test-action.R | 14 ++++++++++++-- 9 files changed, 70 insertions(+), 36 deletions(-)
Title: Information-Theoretic Measure of Causality
Description: Methods for quantifying temporal and spatial causality through information flow, and decomposing it into unique, redundant, and synergistic components, following the framework described in Martinez-Sanchez et al. (2024) <doi:10.1038/s41467-024-53373-4>.
Author: Wenbo Lyu [aut, cre, cph]
Maintainer: Wenbo Lyu <lyu.geosocial@gmail.com>
Diff between infocausality versions 1.0 dated 2025-11-03 and 1.1 dated 2026-03-20
infocausality-1.0/infocausality/inst/python/__pycache__ |only infocausality-1.1/infocausality/DESCRIPTION | 15 infocausality-1.1/infocausality/MD5 | 30 infocausality-1.1/infocausality/NAMESPACE | 8 infocausality-1.1/infocausality/NEWS.md | 6 infocausality-1.1/infocausality/R/Agenerics.R | 24 infocausality-1.1/infocausality/R/RcppExports.R | 62 - infocausality-1.1/infocausality/R/infocausality-package.R | 8 infocausality-1.1/infocausality/R/surd.R | 166 +-- infocausality-1.1/infocausality/R/utils.R | 24 infocausality-1.1/infocausality/R/zzz.R | 15 infocausality-1.1/infocausality/README.md | 16 infocausality-1.1/infocausality/build/vignette.rds |binary infocausality-1.1/infocausality/inst/CITATION |only infocausality-1.1/infocausality/inst/doc/surd.html | 5 infocausality-1.1/infocausality/inst/python/InfoCausality.py | 530 +++++------ infocausality-1.1/infocausality/man/surd.Rd | 174 +-- 17 files changed, 552 insertions(+), 531 deletions(-)
Title: Feature Stores for the 'diseasy' Framework
Description: Simple feature stores and tools for creating personalised feature stores.
'diseasystore' powers feature stores which can automatically link and aggregate features to a given stratification
level. These feature stores are automatically time-versioned (powered by the 'SCDB' package) and allows you to easily
and dynamically compute features as part of your continuous integration.
Author: Rasmus Skytte Randloev [aut, cre] ,
Kaare Graesboell [rev] ,
Kasper Schou Telkamp [rev] ,
Lasse Engbo Christiansen [rev] ,
Marcus Munch Gruenewald [rev] ,
Sofia Myrup Otero [rev],
Statens Serum Institut, SSI [cph, fnd]
Maintainer: Rasmus Skytte Randloev <rske@ssi.dk>
Diff between diseasystore versions 0.3.2 dated 2025-10-17 and 0.3.3 dated 2026-03-20
DESCRIPTION | 13 MD5 | 59 +-- NEWS.md | 368 ++++++++++---------- R/0_linters.R | 10 R/0_miscellaneous.R | 4 R/DiseasystoreBase.R | 216 ++++++----- R/age_helpers.R | 2 R/test_diseasystore.R | 35 + inst/WORDLIST | 48 ++ inst/doc/benchmarks.html | 2 inst/doc/diseasystore-ecdc-respiratory-viruses.html | 4 inst/doc/diseasystore-google-covid-19.R | 2 inst/doc/diseasystore-google-covid-19.Rmd | 2 inst/doc/diseasystore-google-covid-19.html | 6 inst/doc/diseasystore.html | 18 inst/doc/extending-diseasystore-example.Rmd | 34 - inst/doc/extending-diseasystore-example.html | 42 +- inst/doc/extending-diseasystore.Rmd | 15 inst/extdata/benchmarks.rds |binary man/DiseasystoreBase.Rd | 38 ++ man/DiseasystoreEcdcRespiratoryViruses.Rd | 1 man/DiseasystoreGoogleCovid19.Rd | 1 man/DiseasystoreSimulist.Rd | 1 tests/testthat/test-DiseasystoreBase.R | 280 ++++++++++----- tests/testthat/test-age_helpers.R | 5 vignettes/diseasystore-google-covid-19.Rmd | 2 vignettes/extending-diseasystore-example.Rmd | 34 - vignettes/extending-diseasystore.Rmd | 15 vignettes/vignette_data |only 29 files changed, 771 insertions(+), 486 deletions(-)
Title: Causal Graph Interface
Description: Create, query, and modify causal graphs. 'caugi' (Causal Graph
Interface) is a causality-first, high performance graph package that
provides a simple interface to build, structure, and examine causal
relationships.
Author: Frederik Fabricius-Bjerre [aut, cre, cph],
Johan Larsson [aut] ,
Michael Sachs [aut] ,
Bjarke Hautop Kristensen [aut]
Maintainer: Frederik Fabricius-Bjerre <frederik@fabriciusbjerre.dk>
Diff between caugi versions 1.0.0 dated 2026-01-22 and 1.1.0 dated 2026-03-20
caugi-1.0.0/caugi/R/plot.R |only caugi-1.0.0/caugi/inst/doc/get_started.R |only caugi-1.0.0/caugi/inst/doc/get_started.Rmd |only caugi-1.0.0/caugi/inst/doc/get_started.html |only caugi-1.0.0/caugi/man/dot-cg_state.Rd |only caugi-1.0.0/caugi/man/dot-mark_not_built.Rd |only caugi-1.0.0/caugi/man/dot-view_to_caugi.Rd |only caugi-1.0.0/caugi/vignettes/get_started.Rmd |only caugi-1.1.0/caugi/DESCRIPTION | 23 caugi-1.1.0/caugi/MD5 | 350 - caugi-1.1.0/caugi/NAMESPACE | 9 caugi-1.1.0/caugi/NEWS.md | 57 caugi-1.1.0/caugi/R/adjustment.R | 244 - caugi-1.1.0/caugi/R/all-classes.R | 21 caugi-1.1.0/caugi/R/as_caugi.R | 26 caugi-1.1.0/caugi/R/caugi.R | 421 -- caugi-1.1.0/caugi/R/extendr-wrappers.R | 152 caugi-1.1.0/caugi/R/format-caugi.R | 58 caugi-1.1.0/caugi/R/format-dot.R | 3 caugi-1.1.0/caugi/R/format-graphml.R | 11 caugi-1.1.0/caugi/R/format-mermaid.R | 3 caugi-1.1.0/caugi/R/layout.R |only caugi-1.1.0/caugi/R/methods.R | 176 caugi-1.1.0/caugi/R/metrics.R | 31 caugi-1.1.0/caugi/R/operations.R | 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Title: The Ultimate Tool for Reading Data in Bulk
Description: Designed to simplify and streamline the process of reading
and processing large volumes of data in R, this package offers a
collection of functions tailored for bulk data operations. It enables
users to efficiently read multiple sheets from Microsoft Excel and
Google Sheets workbooks, as well as various CSV files from a
directory. The data is returned as organized data frames, facilitating
further analysis and manipulation. Ideal for handling extensive data
sets or batch processing tasks, bulkreadr empowers users to manage
data in bulk effortlessly, saving time and effort in data preparation
workflows. Additionally, the package seamlessly works with labelled
data from SPSS and Stata.
Author: Ezekiel Ogundepo [aut, cre] ,
Ernest Fokoue [ctb] ,
Golibe Ezeechesi [ctb],
Fatimo Adebanjo [ctb],
Isaac Ajao [ctb]
Maintainer: Ezekiel Ogundepo <gbganalyst@gmail.com>
Diff between bulkreadr versions 1.2.1 dated 2025-07-28 and 1.2.2 dated 2026-03-20
DESCRIPTION | 14 - MD5 | 32 +-- NAMESPACE | 1 NEWS.md | 173 ++++++++++--------- R/bulkreadr-package.R | 2 R/inspect_na.R | 132 +++++++++----- README.md | 2 build/vignette.rds |binary inst/doc/intro-to-bulkreadr.html | 15 - inst/doc/labelled-data.Rmd | 256 ++++++++++++++-------------- inst/doc/labelled-data.html | 5 inst/doc/other-functions.R | 1 inst/doc/other-functions.Rmd | 351 +++++++++++++++++++-------------------- inst/doc/other-functions.html | 49 ++--- man/inspect_na.Rd | 33 +-- vignettes/labelled-data.Rmd | 256 ++++++++++++++-------------- vignettes/other-functions.Rmd | 351 +++++++++++++++++++-------------------- 17 files changed, 860 insertions(+), 813 deletions(-)
Title: Calibration of Computer-Coded Verbal Autopsy Algorithm
Description: Calibrates population-level cause-specific mortality fractions (CSMFs) that are derived using computer-coded verbal autopsy (CCVA) algorithms. Leveraging the data collected in the Child Health and Mortality Prevention Surveillance (CHAMPS;<https://champshealth.org/>) project, the package stores misclassification matrix estimates of three CCVA algorithms (EAVA, InSilicoVA, and InterVA) and two age groups (neonates aged 0-27 days, and children aged 1-59 months) across countries (specific estimates for Bangladesh, Ethiopia, Kenya, Mali, Mozambique, Sierra Leone, and South Africa, and a combined estimate for all other countries), enabling global calibration. These estimates are obtained using the framework proposed in Pramanik et al. (2025;<doi:10.1214/24-AOAS2006>) and are analyzed in Pramanik et al. (2026;<doi:10.1136/bmjgh-2025-021747>). Given VA-only data for an age group, CCVA algorithm, and country, the package utilizes the corresponding misclassification matrix est [...truncated...]
Author: Sandipan Pramanik [aut, cre] ,
Emily Wilson [aut],
Jacob Fiksel [aut],
Brian Gilbert [aut],
Abhirup Datta [aut]
Maintainer: Sandipan Pramanik <sandy.pramanik@gmail.com>
Diff between vacalibration versions 2.0 dated 2025-07-24 and 2.2 dated 2026-03-20
vacalibration-2.0/vacalibration/R/Mmat_champs.R |only vacalibration-2.0/vacalibration/R/comsamoz_public_broad.R |only vacalibration-2.0/vacalibration/R/comsamoz_public_openVAout.R |only vacalibration-2.0/vacalibration/R/modular_vacalib.R |only vacalibration-2.0/vacalibration/data/Mmat_champs.rda |only vacalibration-2.0/vacalibration/data/comsamoz_public_broad.rda |only vacalibration-2.0/vacalibration/data/comsamoz_public_openVAout.rda |only vacalibration-2.0/vacalibration/inst/stan/seqcalib_mmat.rds |only vacalibration-2.0/vacalibration/man/Mmat_champs.Rd |only vacalibration-2.0/vacalibration/man/comsamoz_public_broad.Rd |only vacalibration-2.0/vacalibration/man/comsamoz_public_openVAout.Rd |only vacalibration-2.0/vacalibration/man/modular.vacalib.Rd |only vacalibration-2.2/vacalibration/DESCRIPTION | 20 vacalibration-2.2/vacalibration/LICENSE |only vacalibration-2.2/vacalibration/MD5 | 68 vacalibration-2.2/vacalibration/NAMESPACE | 8 vacalibration-2.2/vacalibration/R/CCVA_missmat.R |only vacalibration-2.2/vacalibration/R/cause_map.R | 64 vacalibration-2.2/vacalibration/R/comsamoz_CCVAoutput.R |only vacalibration-2.2/vacalibration/R/model_utils.R |only vacalibration-2.2/vacalibration/R/modular_vacalib_fixed.R |only vacalibration-2.2/vacalibration/R/modular_vacalib_prior.R |only vacalibration-2.2/vacalibration/R/plot_vacalib.R |only vacalibration-2.2/vacalibration/R/plot_vacalib_fixed.R |only vacalibration-2.2/vacalibration/R/plot_vacalib_prior.R |only vacalibration-2.2/vacalibration/R/smart_round.R |only vacalibration-2.2/vacalibration/R/vacalibration.R | 1331 ++++- vacalibration-2.2/vacalibration/R/zzz.R | 19 vacalibration-2.2/vacalibration/README.md |only vacalibration-2.2/vacalibration/build/partial.rdb |only vacalibration-2.2/vacalibration/build/vignette.rds |binary vacalibration-2.2/vacalibration/data/CCVA_missmat.rda |only vacalibration-2.2/vacalibration/data/comsamoz_CCVAoutput.rda |only vacalibration-2.2/vacalibration/inst/doc/intro_to_vacalibration.R | 199 vacalibration-2.2/vacalibration/inst/doc/intro_to_vacalibration.Rmd | 359 - vacalibration-2.2/vacalibration/inst/doc/intro_to_vacalibration.html | 2366 +++++++--- vacalibration-2.2/vacalibration/inst/stan/seqcalib.rds |binary vacalibration-2.2/vacalibration/inst/stan/seqcalib.stan | 70 vacalibration-2.2/vacalibration/inst/stan/seqcalib_mmat.stan | 60 vacalibration-2.2/vacalibration/man/CCVA_missmat.Rd |only vacalibration-2.2/vacalibration/man/cause_map.Rd | 30 vacalibration-2.2/vacalibration/man/comsamoz_CCVAoutput.Rd |only vacalibration-2.2/vacalibration/man/figures |only vacalibration-2.2/vacalibration/man/modular_vacalib_fixed.Rd |only vacalibration-2.2/vacalibration/man/modular_vacalib_prior.Rd |only vacalibration-2.2/vacalibration/man/plot_vacalib.Rd |only vacalibration-2.2/vacalibration/man/plot_vacalib_fixed.Rd |only vacalibration-2.2/vacalibration/man/plot_vacalib_prior.Rd |only vacalibration-2.2/vacalibration/man/smart_round.Rd |only vacalibration-2.2/vacalibration/man/vacalibration.Rd | 367 - vacalibration-2.2/vacalibration/vignettes/custom.css |only vacalibration-2.2/vacalibration/vignettes/figures |only vacalibration-2.2/vacalibration/vignettes/intro_to_vacalibration.Rmd | 359 - 53 files changed, 3619 insertions(+), 1701 deletions(-)
Title: Construct Process Maps Using Event Data
Description: Visualize event logs using directed graphs, i.e. process maps. Part of the 'bupaR' framework.
Author: Gert Janssenswillen [aut],
Gerard van Hulzen [ctb],
Benoît Depaire [cre],
Felix Mannhardt [ctb],
Thijs Beuving [ctb],
urvikalia [ctb],
Hasselt University [cph]
Maintainer: Benoît Depaire <benoit.depaire@uhasselt.be>
This is a re-admission after prior archival of version 0.5.7 dated 2025-07-09
Diff between processmapR versions 0.5.7 dated 2025-07-09 and 0.5.8 dated 2026-03-20
DESCRIPTION | 26 ++++++++-------- MD5 | 21 ++++++------- NAMESPACE | 1 R/dotted_chart.R | 2 - R/groupby_helpers.R |only R/processmapR.R | 4 +- R/resource_map.R | 2 - R/trace_explorer.R | 61 ++++++++++++++++++++++++++++---------- R/utils.R | 8 ++++ README.md | 3 - inst/doc/processmapr.html | 4 +- man/figures/README-example2-1.png |binary 12 files changed, 84 insertions(+), 48 deletions(-)
Title: Necessary Condition Analysis
Description: Performs a Necessary Condition Analysis (NCA). (Dul, J. 2016. Necessary Condition Analysis (NCA). ''Logic and Methodology of 'Necessary but not Sufficient' causality." Organizational Research Methods 19(1), 10-52) <doi:10.1177/1094428115584005>.
NCA identifies necessary (but not sufficient) conditions in datasets, where x causes (e.g. precedes) y. Instead of drawing a regression line ''through the middle of the data'' in an xy-plot, NCA draws the ceiling line. The ceiling line y = f(x) separates the area with observations from the area without observations.
(Nearly) all observations are below the ceiling line: y <= f(x). The empty zone is in the upper left hand corner of the xy-plot (with the convention that the x-axis is ''horizontal'' and the y-axis is ''vertical'' and that values increase ''upwards'' and ''to the right''). The ceiling line is a (piecewise) linear non-decreasing line: a linear step function or a straight line. It indicates which level of x (e.g., an effort, [...truncated...]
Author: Jan Dul [aut],
Govert Buijs [cre]
Maintainer: Govert Buijs <buijs@rsm.nl>
Diff between NCA versions 4.0.5 dated 2025-12-21 and 5.0.0 dated 2026-03-20
NCA-4.0.5/NCA/R/p_above.R |only NCA-4.0.5/NCA/R/p_fit.R |only NCA-4.0.5/NCA/R/p_nca_ce_cm.R |only NCA-4.0.5/NCA/R/p_nca_ce_cm_conf.R |only NCA-4.0.5/NCA/R/p_nca_ce_fdhi.R |only NCA-4.0.5/NCA/R/p_nca_ce_lfdh.R |only NCA-4.0.5/NCA/R/p_nca_cr_cm.R |only NCA-4.0.5/NCA/R/p_nca_cr_cm_conf.R |only NCA-4.0.5/NCA/R/p_nca_cr_fdhi.R |only NCA-4.0.5/NCA/R/p_nca_ct_fdh.R |only NCA-4.0.5/NCA/R/p_nca_lh.R |only NCA-4.0.5/NCA/R/p_nca_sfa.R |only NCA-5.0.0/NCA/DESCRIPTION | 15 - NCA-5.0.0/NCA/MD5 | 112 +++---- NCA-5.0.0/NCA/NAMESPACE | 15 - NCA-5.0.0/NCA/NEWS.md | 28 + NCA-5.0.0/NCA/R/nca.R | 45 +-- NCA-5.0.0/NCA/R/nca_bottleneck.R | 139 +++++++-- NCA-5.0.0/NCA/R/nca_difference.R |only NCA-5.0.0/NCA/R/nca_extract.R |only NCA-5.0.0/NCA/R/nca_normalize.R |only NCA-5.0.0/NCA/R/nca_outliers.R | 110 ++++--- NCA-5.0.0/NCA/R/nca_output.R | 100 ++++++ NCA-5.0.0/NCA/R/nca_plotly.R | 248 ++++++++-------- NCA-5.0.0/NCA/R/nca_plots.R | 381 ++++++++++++-------------- NCA-5.0.0/NCA/R/nca_power.R | 288 +++++++++++++------ NCA-5.0.0/NCA/R/nca_random.R | 6 NCA-5.0.0/NCA/R/nca_summary.R | 367 +++++++++++++------------ NCA-5.0.0/NCA/R/nca_tests.R | 32 -- NCA-5.0.0/NCA/R/onAttach.R | 57 --- NCA-5.0.0/NCA/R/p_bottleneck.R | 4 NCA-5.0.0/NCA/R/p_ceiling.R | 33 -- NCA-5.0.0/NCA/R/p_confidence.R | 6 NCA-5.0.0/NCA/R/p_constants.R | 58 +-- NCA-5.0.0/NCA/R/p_graphics.R | 2 NCA-5.0.0/NCA/R/p_line_to_points.R |only NCA-5.0.0/NCA/R/p_loop_data.R | 4 NCA-5.0.0/NCA/R/p_metrics.R |only NCA-5.0.0/NCA/R/p_nca_c_lp.R | 102 ++++-- NCA-5.0.0/NCA/R/p_nca_ce_fdh.R | 95 ++++-- NCA-5.0.0/NCA/R/p_nca_ce_vrs.R | 78 +++-- NCA-5.0.0/NCA/R/p_nca_cols.R | 82 +++-- NCA-5.0.0/NCA/R/p_nca_cr_fdh.R | 100 ++++-- NCA-5.0.0/NCA/R/p_nca_cr_vrs.R | 84 +++-- NCA-5.0.0/NCA/R/p_nca_custom.R |only NCA-5.0.0/NCA/R/p_nca_ols.R | 50 ++- NCA-5.0.0/NCA/R/p_nca_qr.R | 78 +++-- NCA-5.0.0/NCA/R/p_peers.R | 11 NCA-5.0.0/NCA/R/p_purity_helpers.R |only NCA-5.0.0/NCA/R/p_purity_metrics.R |only NCA-5.0.0/NCA/R/p_purity_sql.R |only NCA-5.0.0/NCA/R/p_scope.R | 84 ++--- NCA-5.0.0/NCA/R/p_utils.R | 133 +++++---- NCA-5.0.0/NCA/R/p_validate.R | 169 +++++++---- NCA-5.0.0/NCA/build/partial.rdb |binary NCA-5.0.0/NCA/man/NCA-package.Rd | 27 - NCA-5.0.0/NCA/man/nca.Rd | 6 NCA-5.0.0/NCA/man/nca.example.Rd | 6 NCA-5.0.0/NCA/man/nca.example2.Rd | 4 NCA-5.0.0/NCA/man/nca_analysis.Rd | 55 ++- NCA-5.0.0/NCA/man/nca_difference.Rd |only NCA-5.0.0/NCA/man/nca_extract.Rd |only NCA-5.0.0/NCA/man/nca_normalize.Rd |only NCA-5.0.0/NCA/man/nca_outliers.Rd | 16 - NCA-5.0.0/NCA/man/nca_output.Rd | 29 + NCA-5.0.0/NCA/man/nca_power.Rd | 20 - NCA-5.0.0/NCA/man/nca_powerplot.Rd |only NCA-5.0.0/NCA/man/nca_random.Rd | 4 NCA-5.0.0/NCA/tests/testthat/test-intercept.R |only NCA-5.0.0/NCA/tests/testthat/test.p_ceiling.R | 7 70 files changed, 1910 insertions(+), 1380 deletions(-)
Title: Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data. In
particular representation, manipulation, rate estimation and
simulation for multistate data - the Lexis suite of functions, which
includes interfaces to 'mstate', 'etm' and 'cmprsk' packages.
Contains functions for Age-Period-Cohort and Lee-Carter modeling and
a function for interval censored data. Has functions for extracting
and manipulating parameter estimates and predicted values (ci.lin
and its cousins), as well as a number of epidemiological data sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.61 dated 2025-10-07 and 2.63 dated 2026-03-20
CHANGES | 23 DESCRIPTION | 8 MD5 | 154 NAMESPACE | 4 R/LexisScarf.R |only R/cutLexis.R | 20 R/lexis.R | 15 R/overlap.Lexis.R |only R/paths.Lexis.R | 10 R/xcutLexis.R | 2 inst/doc/01flup.R | 94 inst/doc/01flup.pdf |binary inst/doc/02addLexis.pdf |binary inst/doc/03crisk.pdf |binary inst/doc/04simLexis.pdf |binary inst/doc/05yll.pdf |binary man/Icens.Rd | 72 man/LexisScarf.Rd |only man/ci.lin.Rd | 38 man/cutLexis.Rd | 2 man/mcutLexis.Rd | 2 man/overlap.Lexis.Rd |only man/paths.Lexis.Rd | 12 man/time.scales.Rd | 8 man/xcutLexis.Rd | 40 vignettes/01flup-Ieff.pdf |binary vignettes/01flup-IeffR.pdf |binary vignettes/01flup-box1.pdf |binary vignettes/01flup-box4.pdf |binary vignettes/01flup-dmL1.pdf |binary vignettes/01flup-dmL2.pdf |binary vignettes/01flup-dur-int-RR.pdf |binary vignettes/01flup-dur-int.pdf |binary vignettes/01flup-ins-time.pdf |binary vignettes/01flup-mbox.pdf |binary vignettes/01flup-mboxr.pdf |binary vignettes/01flup-pr-a.pdf |binary vignettes/01flup-sep-HR.pdf |binary vignettes/01flup-sep-mort.pdf |binary vignettes/01flup.R | 94 vignettes/01flup.pdf | 6380 +++++++++++++++----------------------- vignettes/01flup.rnw | 68 vignettes/01flup.tex | 140 vignettes/02addLexis.pdf | 1772 +++++----- vignettes/02addLexis.rnw | 4 vignettes/02addLexis.tex | 20 vignettes/03crisk-Sr1.pdf |binary vignettes/03crisk-Sr2.pdf |binary vignettes/03crisk-boxes.pdf |binary vignettes/03crisk-boxes4.pdf |binary vignettes/03crisk-boxes5.pdf |binary vignettes/03crisk-cR.pdf |binary vignettes/03crisk-crates.pdf |binary vignettes/03crisk-difrat.pdf |binary vignettes/03crisk-difratx.pdf |binary vignettes/03crisk-rates-ci.pdf |binary vignettes/03crisk-rates-l.pdf |binary vignettes/03crisk-rates.pdf |binary vignettes/03crisk-stack-ci.pdf |binary vignettes/03crisk-stack.pdf |binary vignettes/03crisk.pdf | 2900 ++++++++--------- vignettes/03crisk.rnw | 4 vignettes/03crisk.tex | 12 vignettes/04simLexis-boxes.pdf |binary vignettes/04simLexis-comp-0.pdf |binary vignettes/04simLexis-mort-int.pdf |binary vignettes/04simLexis-pstate0.pdf |binary vignettes/04simLexis-pstatex.pdf |binary vignettes/04simLexis-pstatey.pdf |binary vignettes/04simLexis.pdf | 6342 ++++++++++++++++++------------------- vignettes/04simLexis.rnw | 10 vignettes/04simLexis.tex | 44 vignettes/05yll-imm.pdf |binary vignettes/05yll-states.pdf |binary vignettes/05yll-sus.pdf |binary vignettes/05yll-tot.pdf |binary vignettes/05yll.pdf |binary vignettes/05yll.rnw | 4 vignettes/05yll.tex | 12 vignettes/fixall.bat | 12 80 files changed, 8608 insertions(+), 9714 deletions(-)
Title: Create Spreadsheet Publications Following Best Practice
Description: Generate spreadsheet publications that follow best practice
guidance from the UK government's Analysis Function, available at
<https://analysisfunction.civilservice.gov.uk/policy-store/releasing-statistics-in-spreadsheets/>,
with a focus on accessibility. See also the 'Python' package 'gptables'.
Author: Matt Dray [aut],
Tim Taylor [ctb],
Matt Kerlogue [ctb],
Crown Copyright [cph],
Olivia Box Power [cre, ctb],
Zachary Gleisner [ctb]
Maintainer: Olivia Box Power <Olivia.BoxPower@dhsc.gov.uk>
Diff between aftables versions 1.0.1 dated 2025-02-19 and 2.0.0 dated 2026-03-20
DESCRIPTION | 28 - MD5 | 117 +++--- NAMESPACE | 19 NEWS.md | 12 R/addin.R | 16 R/aftable.R | 46 -- R/aftables-package.R | 18 R/config_utils.R |only R/data.R | 10 R/sysdata.rda |only R/utils-aftable.R | 36 - R/utils-workbook-style.R | 385 ++++++++++--------- R/utils-workbook.R | 641 ++++++++++++++++++++++++--------- R/utils.R | 3 R/workbook.R | 121 +++++- README.md | 34 - build/vignette.rds |binary data/demo_workbook.rda |binary inst/doc/aftables.R | 7 inst/doc/aftables.Rmd | 517 +++++++++++++------------- inst/doc/aftables.html | 137 ++----- inst/doc/checklist.Rmd | 194 ++++----- inst/doc/checklist.html | 17 inst/doc/configfiles.R |only inst/doc/configfiles.Rmd |only inst/doc/configfiles.html |only inst/doc/structure.Rmd | 349 +++++++++-------- inst/doc/structure.html | 73 +-- inst/doc/terminology.Rmd | 124 +++--- inst/doc/terminology.html | 2 inst/ext-data |only inst/rstudio/addins.dcf | 11 man/aftables-package.Rd | 3 man/at_template_aftable.Rd | 4 man/at_template_workflow.Rd | 2 man/create_aftable.Rd | 22 - man/create_config_yaml.Rd |only man/demo_aftable.Rd | 4 man/demo_df.Rd | 2 man/demo_workbook.Rd | 4 man/figures/vignette-workbook.gif |binary man/generate_workbook.Rd | 81 +++- tests/testthat/configs |only tests/testthat/test-addins.R | 1 tests/testthat/test-aftable.R | 385 ++++++++++--------- tests/testthat/test-apply-config.R |only tests/testthat/test-read-config-yaml.R |only tests/testthat/test-utils.R | 168 ++++++++ tests/testthat/test-workbook.R | 56 ++ vignettes/aftables.Rmd | 517 +++++++++++++------------- vignettes/checklist.Rmd | 194 ++++----- vignettes/configfiles.Rmd |only vignettes/structure.Rmd | 349 +++++++++-------- vignettes/terminology.Rmd | 124 +++--- 54 files changed, 2742 insertions(+), 2091 deletions(-)
Title: Analysing Prognostic Studies
Description: Functions that help with analysis of prognostic study data. This allows users with little experience of developing models to develop models and assess the performance of the prognostic models. This also summarises the information, so the performance of multiple models can be displayed simultaneously. This minor update fixes issues related to memory requirements with large number of simulations and deals with situations when there is overfitting of data. Gurusamy, K (2026)<https://github.com/kurinchi2k/EQUALPrognosis>.
Author: Kurinchi Gurusamy [aut, cre]
Maintainer: Kurinchi Gurusamy <k.gurusamy@ucl.ac.uk>
Diff between EQUALPrognosis versions 0.1.2 dated 2026-02-04 and 0.1.3 dated 2026-03-20
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/calculate_actual_predicted.R | 2 +- R/compile_results.R | 26 +++++++++++++------------- 4 files changed, 22 insertions(+), 22 deletions(-)
More information about EQUALPrognosis at CRAN
Permanent link
Title: Exploratory and Descriptive Event-Based Data Analysis
Description: Exploratory and descriptive analysis of event based data. Provides methods for describing and selecting process data, and for preparing event log data for process mining. Builds on the S3-class for event logs implemented in the package 'bupaR'.
Author: Benoît Depaire [cre],
Gert Janssenswillen [aut],
Gerard van Hulzen [ctb],
Marijke Swennen [ctb],
Ivan Esin [ctb],
Felix Mannhardt [ctb],
Hasselt University [cph]
Maintainer: Benoît Depaire <benoit.depaire@uhasselt.be>
Diff between edeaR versions 1.0.0 dated 2025-11-29 and 1.0.1 dated 2026-03-20
edeaR-1.0.0/edeaR/R/ifilter.R |only edeaR-1.0.0/edeaR/man/ifilter.Rd |only edeaR-1.0.1/edeaR/DESCRIPTION | 6 edeaR-1.0.1/edeaR/MD5 | 144 ++--- edeaR-1.0.1/edeaR/R/activity_frequency.R | 222 ++++---- edeaR-1.0.1/edeaR/R/activity_presence.R | 198 +++---- edeaR-1.0.1/edeaR/R/calculate_queuing_times.R | 114 ++-- edeaR-1.0.1/edeaR/R/edeaR.R | 70 +- edeaR-1.0.1/edeaR/R/end_activities.R | 228 ++++---- edeaR-1.0.1/edeaR/R/filter_activity.R | 146 ++--- edeaR-1.0.1/edeaR/R/filter_activity_frequency.R | 318 ++++++------ edeaR-1.0.1/edeaR/R/filter_activity_instance.R | 150 ++--- edeaR-1.0.1/edeaR/R/filter_activity_presence.R | 320 ++++++------ edeaR-1.0.1/edeaR/R/filter_case.R | 148 ++--- edeaR-1.0.1/edeaR/R/filter_case_condition.R | 76 +- edeaR-1.0.1/edeaR/R/filter_endpoints.R | 234 ++++----- edeaR-1.0.1/edeaR/R/filter_endpoints_condition.R | 270 +++++----- edeaR-1.0.1/edeaR/R/filter_lifecycle.R | 146 ++--- edeaR-1.0.1/edeaR/R/filter_lifecycle_presence.R | 268 +++++----- edeaR-1.0.1/edeaR/R/filter_precedence.R | 390 +++++++-------- edeaR-1.0.1/edeaR/R/filter_precedence_condition.R | 268 +++++----- edeaR-1.0.1/edeaR/R/filter_precedence_resource.R | 434 ++++++++--------- edeaR-1.0.1/edeaR/R/filter_processing_time.R | 294 +++++------ edeaR-1.0.1/edeaR/R/filter_resource.R | 140 ++--- edeaR-1.0.1/edeaR/R/filter_resource_frequency.R | 320 ++++++------ edeaR-1.0.1/edeaR/R/filter_throughput_time.R | 242 ++++----- edeaR-1.0.1/edeaR/R/filter_time_period.R | 404 +++++++-------- edeaR-1.0.1/edeaR/R/filter_trace_frequency.R | 238 ++++----- edeaR-1.0.1/edeaR/R/filter_trace_length.R | 252 ++++----- edeaR-1.0.1/edeaR/R/filter_trim.R | 316 ++++++------ edeaR-1.0.1/edeaR/R/filter_trim_lifecycle.R | 258 +++++----- edeaR-1.0.1/edeaR/R/groupby_helpers.R | 158 +++--- edeaR-1.0.1/edeaR/R/idle_time.R | 270 +++++----- edeaR-1.0.1/edeaR/R/idle_time_case.R | 114 ++-- edeaR-1.0.1/edeaR/R/idle_time_resource.R | 112 ++-- edeaR-1.0.1/edeaR/R/idle_time_trace.R | 42 - edeaR-1.0.1/edeaR/R/number_of_repetitions.R | 414 ++++++++-------- edeaR-1.0.1/edeaR/R/number_of_selfloops.R | 416 ++++++++-------- edeaR-1.0.1/edeaR/R/number_of_traces.R | 106 ++-- edeaR-1.0.1/edeaR/R/plot.activity_frequency.R | 102 +-- edeaR-1.0.1/edeaR/R/plot.activity_presence.R | 40 - edeaR-1.0.1/edeaR/R/plot.end_activity.R | 138 ++--- edeaR-1.0.1/edeaR/R/plot.idle_time.R | 90 +-- edeaR-1.0.1/edeaR/R/plot.number_of_repetitions.R | 188 +++---- edeaR-1.0.1/edeaR/R/plot.number_of_selfloops.R | 188 +++---- edeaR-1.0.1/edeaR/R/plot.processing_time.R | 130 ++--- edeaR-1.0.1/edeaR/R/plot.referral_matrix.R | 38 - edeaR-1.0.1/edeaR/R/plot.resource_frequency.R | 130 ++--- edeaR-1.0.1/edeaR/R/plot.resource_involvement.R | 94 +-- edeaR-1.0.1/edeaR/R/plot.resource_specialisation.R | 96 +-- edeaR-1.0.1/edeaR/R/plot.start_activities.R | 136 ++--- edeaR-1.0.1/edeaR/R/plot.throughput_time.R | 106 ++-- edeaR-1.0.1/edeaR/R/plot.trace_coverage.R | 114 ++-- edeaR-1.0.1/edeaR/R/plot.trace_length.R | 94 +-- edeaR-1.0.1/edeaR/R/processing_time.R | 354 ++++++------- edeaR-1.0.1/edeaR/R/processing_time_case.R | 56 +- edeaR-1.0.1/edeaR/R/processing_time_trace.R | 54 +- edeaR-1.0.1/edeaR/R/redo_repetitions_referral_matrix.R | 98 +-- edeaR-1.0.1/edeaR/R/redo_selfloops_referral_matrix.R | 92 +-- edeaR-1.0.1/edeaR/R/resource_frequency.R | 250 ++++----- edeaR-1.0.1/edeaR/R/resource_involvement.R | 178 +++--- edeaR-1.0.1/edeaR/R/resource_specialisation.R | 200 +++---- edeaR-1.0.1/edeaR/R/size_of_repetitions.R | 268 +++++----- edeaR-1.0.1/edeaR/R/size_of_selfloops.R | 278 +++++----- edeaR-1.0.1/edeaR/R/start_activities.R | 228 ++++---- edeaR-1.0.1/edeaR/R/throughput_time.R | 312 ++++++------ edeaR-1.0.1/edeaR/R/throughput_time_activity.R | 50 - edeaR-1.0.1/edeaR/R/throughput_time_trace.R | 48 - edeaR-1.0.1/edeaR/R/trace_coverage.R | 150 ++--- edeaR-1.0.1/edeaR/R/trace_length.R | 224 ++++---- edeaR-1.0.1/edeaR/inst/doc/filters.html | 4 edeaR-1.0.1/edeaR/inst/doc/metrics.html | 66 +- edeaR-1.0.1/edeaR/inst/doc/queue.html | 19 edeaR-1.0.1/edeaR/inst/doc/work_schedules.html | 4 74 files changed, 6435 insertions(+), 6428 deletions(-)
Title: Analysing SNP Data to Identify Sex-Linked Markers
Description: Identifies, filters and exports sex linked markers using 'SNP'
(single nucleotide polymorphism) data. To install the other packages, we
recommend to install the 'dartRverse' package, that supports the installation of all packages in the 'dartRverse'.
If you want understand the applied rational to identify sexlinked markers
and/or want to cite 'dartR.sexlinked', you find the information by typing
citation('dartR.sexlinked') in the console.
Author: Diana Robledo-Ruiz [aut, cre],
Floriaan Devloo-Delva [aut],
Bernd Gruber [aut],
Arthur Georges [aut],
Jose L. Mijangos [aut],
Carlo Pacioni [aut],
Peter J. Unmack [ctb],
Oliver Berry [ctb]
Maintainer: Diana Robledo-Ruiz <diana.robledoruiz1@monash.edu>
Diff between dartR.sexlinked versions 1.0.5 dated 2024-06-24 and 1.2.2 dated 2026-03-20
DESCRIPTION | 17 - MD5 | 24 - NAMESPACE | 3 R/gl.drop.sexlinked.r | 660 ------------------------------------------- R/gl.filter.sexlinked.r |only R/gl.infer.sex.r | 288 +++++++++++-------- R/gl.keep.sexlinked.r | 678 +++++++++++++++++++++++++-------------------- R/gl.report.sexlinked.r | 565 +++++++++++++++++++++---------------- R/zzz.r | 2 man/gl.drop.sexlinked.Rd | 80 ----- man/gl.filter.sexlinked.Rd |only man/gl.infer.sex.Rd | 69 ++-- man/gl.keep.sexlinked.Rd | 55 +-- man/gl.report.sexlinked.Rd | 71 ++-- 14 files changed, 1033 insertions(+), 1479 deletions(-)
More information about dartR.sexlinked at CRAN
Permanent link
Title: Optimal Pairing and Matching via Linear Assignment
Description: Solves optimal pairing and matching problems using linear assignment
algorithms. Provides implementations of the Hungarian method (Kuhn 1955)
<doi:10.1002/nav.3800020109>, Jonker-Volgenant shortest path algorithm
(Jonker and Volgenant 1987) <doi:10.1007/BF02278710>, Auction algorithm
(Bertsekas 1988) <doi:10.1007/BF02186476>, cost-scaling
(Goldberg and Kennedy 1995) <doi:10.1007/BF01585996>, scaling algorithms
(Gabow and Tarjan 1989) <doi:10.1137/0218069>, push-relabel (Goldberg and
Tarjan 1988) <doi:10.1145/48014.61051>, and Sinkhorn entropy-regularized
transport (Cuturi 2013) <doi:10.48550/arxiv.1306.0895>. Designed for
matching plots, sites, samples, or any pairwise optimization problem.
Supports rectangular matrices, forbidden assignments, data frame inputs,
batch solving, k-best solutions, and pixel-level image morphing for
visualization. Includes automatic preprocessing with variable health
checks, multiple scaling methods (standardized, [...truncated...]
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between couplr versions 1.1.0 dated 2026-03-03 and 1.2.0 dated 2026-03-20
DESCRIPTION | 9 MD5 | 139 ++++-- NAMESPACE | 26 + NEWS.md | 126 +++++ R/RcppExports.R | 4 R/matching_cem.R |only R/matching_core.R | 60 +- R/matching_diagnostics.R | 210 +++++++++ R/matching_distance.R | 52 +- R/matching_full.R |only R/matching_interop.R |only R/matching_join.R | 57 ++ R/matching_output.R |only R/matching_parallel.R | 6 R/matching_plots.R | 10 R/matching_subclass.R |only R/utils.R | 3 R/zzz.R | 19 README.md | 64 ++ inst/WORDLIST | 2 inst/doc/algorithms.html | 4 inst/doc/comparison.R | 139 +++--- inst/doc/comparison.Rmd | 52 +- inst/doc/comparison.html | 134 ++++-- inst/doc/getting-started.R | 12 inst/doc/getting-started.Rmd | 44 +- inst/doc/getting-started.html | 393 ++++++++++-------- inst/doc/matching-workflows.R | 205 +++++++++ inst/doc/matching-workflows.Rmd | 312 ++++++++++++++ inst/doc/matching-workflows.html | 495 ++++++++++++++++++++++- inst/doc/pixel-morphing.html | 4 inst/doc/troubleshooting.html | 6 inst/extdata/icons/circleA_40.png |only inst/extdata/icons/circleA_80.png |only inst/extdata/icons/circleB_40.png |only inst/extdata/icons/circleB_80.png |only inst/extdata/icons/circle_color_walk.png |only inst/extdata/icons/circle_exact.png |only inst/extdata/icons/circle_recursive.png |only inst/extdata/morphs/image_color_walk.png |only inst/extdata/morphs/image_exact.png |only inst/extdata/morphs/image_recursive.png |only inst/extdata/work |only man/as_matchit.Rd |only man/bal.tab.matching_result.Rd |only man/balance_diagnostics.Rd | 43 + man/build_cost_matrix.Rd | 3 man/cem_match.Rd |only man/compute_distance_matrix.Rd | 17 man/dot-auto_breaks.Rd |only man/dot-blocks_parallel.Rd | 3 man/dot-couples_blocked.Rd | 3 man/dot-couples_single.Rd | 3 man/full_match.Rd |only man/greedy_couples.Rd | 7 man/greedy_couples_blocked.Rd | 3 man/greedy_couples_single.Rd | 3 man/join_matched.Rd | 25 - man/match_couples.Rd | 7 man/match_couples_blocked.Rd | 3 man/match_couples_single.Rd | 3 man/match_data.Rd |only man/print.cem_result.Rd |only man/print.full_matching_result.Rd |only man/print.subclass_result.Rd |only man/subclass_match.Rd |only src/Makevars | 4 src/Makevars.win | 4 src/RcppExports.cpp | 14 src/rcpp_interface.cpp | 6 src/solvers/solve_full_matching.cpp |only src/solvers/solve_full_matching.h |only src/solvers/solve_full_matching_rcpp.cpp |only tests/testthat/test-lap-solve-batch-coverage-3.R | 6 tests/testthat/test-lap-solve-batch-coverage.R | 17 tests/testthat/test-matching-cem.R |only tests/testthat/test-matching-full-optimal.R |only tests/testthat/test-matching-full.R |only tests/testthat/test-matching-interop.R |only tests/testthat/test-matching-mahalanobis.R |only tests/testthat/test-matching-output.R |only tests/testthat/test-matching-subclass.R |only vignettes/comparison.Rmd | 52 +- vignettes/getting-started.Rmd | 44 +- vignettes/images/ImageA_80.png |only vignettes/images/ImageB_80.png |only vignettes/images/circleA_80.png |only vignettes/images/circleB_80.png |only vignettes/matching-workflows.Rmd | 312 ++++++++++++++ 89 files changed, 2698 insertions(+), 471 deletions(-)
Title: Create Publication-Ready Regression Tables with Panels
Description: Create an automated regression table that is well-suited for models that are estimated with multiple dependent variables. 'panelsummary' extends 'modelsummary' (Arel-Bundock, V. (2022) <doi:10.18637/jss.v103.i01>) by allowing regression tables to be split into multiple sections with a simple function call. Utilize familiar arguments such as fmt, estimate, statistic, vcov, conf_level, stars, coef_map, coef_omit, coef_rename, gof_map, and gof_omit from 'modelsummary' to clean the table, and additionally, add a row for the mean of the dependent variable without external manipulation.
Author: Michael Topper [aut, cre],
Vincent Arel-Bundock [cph]
Maintainer: Michael Topper <miketopper123@gmail.com>
Diff between panelsummary versions 0.1.2.1 dated 2023-08-16 and 0.1.3 dated 2026-03-20
DESCRIPTION | 9 - MD5 | 46 +++---- NEWS.md | 5 R/clean_raw.R | 9 + R/helper_functions.R | 2 R/panelsummary_raw.R | 34 +++++ README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/adding_rows.R | 2 inst/doc/adding_rows.html | 4 inst/doc/panelsummary.R | 2 inst/doc/panelsummary.Rmd | 4 inst/doc/panelsummary.html | 237 +++++++++++++++++++++++++++++++++---- inst/doc/with_fixest.R | 2 inst/doc/with_fixest.Rmd | 2 inst/doc/with_fixest.html | 151 ++++++++++++----------- man/clean_raw.Rd | 8 + man/panelsummary-package.Rd | 1 man/panelsummary.Rd | 41 +++--- man/panelsummary_raw.Rd | 45 ++++--- tests/testthat/test-create_means.R | 26 ++-- vignettes/panelsummary.Rmd | 4 vignettes/with_fixest.Rmd | 2 24 files changed, 454 insertions(+), 184 deletions(-)
Title: Integrated Interface of Bayesian Single Index Models using
'nimble'
Description: Provides tools for fitting Bayesian single index models with
flexible choices of priors for both the index and the link function.
The package implements model estimation and posterior inference using
efficient MCMC algorithms built on the 'nimble' framework, allowing
users to specify, extend, and simulate models in a unified and
reproducible manner. The following methods are implemented in the
package: Antoniadis et al. (2004)
<https://www.jstor.org/stable/24307224>, Wang (2009)
<doi:10.1016/j.csda.2008.12.010>, Choi et al. (2011)
<doi:10.1080/10485251003768019>, Dhara et al. (2019)
<doi:10.1214/19-BA1170>, McGee et al. (2023) <doi:10.1111/biom.13569>.
Author: Seowoo Jung [aut, cre],
Eun-kyung Lee [aut]
Maintainer: Seowoo Jung <jsw1347@ewha.ac.kr>
Diff between BayesSIM versions 1.0.1 dated 2026-01-08 and 1.0.2 dated 2026-03-20
BayesSIM-1.0.1/BayesSIM/man/predict.bsim.Rd |only BayesSIM-1.0.2/BayesSIM/DESCRIPTION | 6 BayesSIM-1.0.2/BayesSIM/MD5 | 90 ++--- BayesSIM-1.0.2/BayesSIM/NAMESPACE | 8 BayesSIM-1.0.2/BayesSIM/R/bayesSIM.R | 2 BayesSIM-1.0.2/BayesSIM/R/bsFisher-sampler.R | 33 ++ BayesSIM-1.0.2/BayesSIM/R/bsFisher.R | 58 ++- BayesSIM-1.0.2/BayesSIM/R/bsPolar.R | 48 ++- BayesSIM-1.0.2/BayesSIM/R/bsSphere-functions.R | 14 BayesSIM-1.0.2/BayesSIM/R/bsSphere-sampler.R | 17 - BayesSIM-1.0.2/BayesSIM/R/bsSphere.R | 48 ++- BayesSIM-1.0.2/BayesSIM/R/bsSpike.R | 48 ++- BayesSIM-1.0.2/BayesSIM/R/generics.R | 262 +++++++++++++---- BayesSIM-1.0.2/BayesSIM/R/gpFisher.R | 49 ++- BayesSIM-1.0.2/BayesSIM/R/gpPolar-functions.R | 160 ++++++---- BayesSIM-1.0.2/BayesSIM/R/gpPolar-sampler.R | 158 +++++++--- BayesSIM-1.0.2/BayesSIM/R/gpPolar.R | 80 +++-- BayesSIM-1.0.2/BayesSIM/R/gpPolarTemp.R | 45 ++ BayesSIM-1.0.2/BayesSIM/R/gpSphere-united.R | 46 ++ BayesSIM-1.0.2/BayesSIM/R/gpspike-functions.R | 1 BayesSIM-1.0.2/BayesSIM/R/gpspike-sampler.R | 8 BayesSIM-1.0.2/BayesSIM/R/gpspike.R | 88 ++++- BayesSIM-1.0.2/BayesSIM/R/initial-params.R | 6 BayesSIM-1.0.2/BayesSIM/man/BayesSIM.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/as.data.frame.bsimPred.Rd |only BayesSIM-1.0.2/BayesSIM/man/as_bsim.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/bsFisher.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/bsPolar.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/bsSphere.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/bsSpike.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/coef.bsim.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/compileModelAndMCMC.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/fitted.bsim.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/genBasic.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/getFunction.Rd | 14 BayesSIM-1.0.2/BayesSIM/man/getInit.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/gof.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/gpFisher.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/gpPolar.Rd | 22 - BayesSIM-1.0.2/BayesSIM/man/gpSphere.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/gpSpike.Rd | 4 BayesSIM-1.0.2/BayesSIM/man/nimTraceplot.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/plot.Rd | 2 BayesSIM-1.0.2/BayesSIM/man/predict.Rd |only BayesSIM-1.0.2/BayesSIM/man/summary.bsim.Rd | 4 BayesSIM-1.0.2/BayesSIM/man/summary.bsimPred.Rd |only BayesSIM-1.0.2/BayesSIM/tests/testthat/test-BayesSIM.R | 2 BayesSIM-1.0.2/BayesSIM/tests/testthat/test-generic.R | 14 48 files changed, 951 insertions(+), 416 deletions(-)
Title: Tools for Parsing and Generating XML Within R and S-Plus
Description: Many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. Also offers access to an
'XPath' "interpreter".
Author: CRAN Team [ctb] ,
Duncan Temple Lang [aut] ,
Tomas Kalibera [ctb],
Ivan Krylov [cre]
Maintainer: Ivan Krylov <ikrylov@disroot.org>
Diff between XML versions 3.99-0.22 dated 2026-02-10 and 3.99-0.23 dated 2026-03-20
ChangeLog | 4 ++++ DESCRIPTION | 6 +++--- MD5 | 10 +++++----- src/Utils.c | 2 +- src/XMLEventParse.c | 5 +++-- src/schema.c | 8 +++++--- 6 files changed, 21 insertions(+), 14 deletions(-)
Title: Create, Modify and Analyse Phylogenetic Trees
Description: Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
tree rearrangement;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of split support;
plotting the position of rogue taxa (Klopfstein & Spasojevic 2019)
<doi:10.1371/journal.pone.0212942>;
calculation of ancestor-descendant relationships,
of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>,
and of tree balance (Mir et al. 2013, Lemant et al. 2022)
<doi:10.1016/j.mbs.2012.10.005>, <doi:10.1093/sysbio/syac027>;
artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
Author: Martin R. Smith [aut, cre, cph] ,
Emmanuel Paradis [cph] ,
Robert Noble [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeTools versions 2.1.0 dated 2026-02-11 and 2.2.0 dated 2026-03-20
DESCRIPTION | 12 MD5 | 574 +- NAMESPACE | 1026 +-- NEWS.md | 1244 ++-- R/AddTip.R | 550 +- R/ArtificialExtinction.R | 242 R/Cherries.R | 5 R/ClusterTable.R | 254 R/Combinatorics.R | 696 +- R/Consensus.R | 300 - R/ConsistentSplits.R | 84 R/Decompose.R | 330 - R/DropTip.R | 12 R/EdgeRatio.R |only R/ImposeConstraint.R | 278 - R/Information.R | 502 - R/KeptPaths.R | 94 R/KeptVerts.R | 126 R/LongBranchScore.R | 150 R/MatchNodes.R | 216 R/MatchStrings.R | 66 R/PathLengths.R | 96 R/PhyToString.R | 286 - R/RUtreebalance.R | 648 +- R/RcppExports-manual.R | 64 R/RcppExports.R | 16 R/ReadMrBayes.R | 180 R/ReadTntTree.R | 580 +- R/Reweight.R | 220 R/RoguePlot.R | 618 +- R/SplitFunctions.R | 912 +-- R/Splits.R | 1294 ++-- R/Stemwardness.R | 218 R/Support.R | 348 - R/TipTimedTree.R | 100 R/TopologyOnly.R | 84 R/TotalCopheneticIndex.R | 316 - R/TreeNumber.R | 1042 ++- R/TreeTools-package.R | 50 R/Treeness.R | 116 R/as.matrix.R | 30 R/as.multiPhylo.R | 152 R/data.R | 180 R/helper_functions.R | 200 R/match.R | 496 - R/mst.R | 158 R/parse_files.R | 1830 +++--- R/phylo.R | 644 +- R/sort.R | 156 R/split_analysis.R | 162 R/tree_ancestors.R | 220 R/tree_comparison.R | 86 R/tree_descendants.R | 274 - R/tree_display.R | 292 - R/tree_generation.R | 998 +-- R/tree_information.R | 206 R/tree_numbering.R | 56 R/tree_properties.R | 1096 +--- R/tree_rearrangement.R | 1294 ++-- R/tree_shape.R | 572 +- R/tree_write.R | 262 R/zzz.R | 68 build/partial.rdb |binary build/vignette.rds |binary data/brewer.R | 40 data/nRootedShapes.R | 114 data/nUnrootedShapes.R | 124 inst/CITATION | 34 inst/REFERENCES.bib | 745 +- inst/WORDLIST | 251 inst/apa-old-doi-prefix.csl | 4541 ++++++++--------- inst/doc/filesystem-navigation.Rmd | 104 inst/doc/filesystem-navigation.html | 4 inst/doc/load-data.Rmd | 428 - inst/doc/load-data.html | 4 inst/doc/load-trees.Rmd | 250 inst/doc/load-trees.html | 4 inst/extdata/input/dataset.nex | 44 inst/extdata/input/notes.nex | 54 inst/extdata/output/named.tre | 6 inst/extdata/output/numbered.tre | 8 inst/extdata/tests/ape-tree.nex | 10 inst/extdata/tests/continuous.nex | 44 inst/extdata/tests/encoding.nex | 48 inst/extdata/tests/parse-nexus.nexus | 510 - inst/extdata/tests/taxon-notes.nex | 48 inst/extdata/tests/tnt-bare-tree.tnt | 2 inst/extdata/tests/tnt-dna.tnt | 42 inst/extdata/tests/tnt-matrix.tnt | 294 - inst/extdata/tests/tnt-namedtree.tre | 8 inst/extdata/tests/tnt-tree.tre | 46 inst/extdata/tests/tnt-trees-and-matrix.tnt | 58 inst/include/TreeTools/SplitList.h | 29 inst/include/TreeTools/tree_number.h |only man/AddTip.Rd | 280 - man/AncestorEdge.Rd | 106 man/ApeTime.Rd | 54 man/ArtificialExtinction.Rd | 216 man/CharacterInformation.Rd | 86 man/Cherries.Rd | 101 man/CladeSizes.Rd | 96 man/CladisticInfo.Rd | 144 man/ClusterTable-methods.Rd | 94 man/ClusterTable.Rd | 160 man/CollapseNode.Rd | 162 man/CompatibleSplits.Rd | 108 man/Consensus.Rd | 104 man/ConsensusWithout.Rd | 211 man/ConstrainedNJ.Rd | 108 man/Decompose.Rd | 166 man/DescendantEdges.Rd | 162 man/DoubleFactorial.Rd | 132 man/DropTip.Rd | 280 - man/EdgeAncestry.Rd | 124 man/EdgeDistances.Rd | 104 man/EdgeRatio.Rd |only man/EndSentence.Rd | 64 man/ExtractTaxa.Rd | 90 man/GenerateTree.Rd | 188 man/Hamming.Rd | 156 man/ImposeConstraint.Rd | 148 man/J1Index.Rd | 190 man/KeptPaths.Rd | 132 man/KeptVerts.Rd | 138 man/LabelSplits.Rd | 172 man/LeafLabelInterchange.Rd | 118 man/ListAncestors.Rd | 218 man/Lobo.data.Rd | 66 man/LongBranch.Rd | 129 man/MRCA.Rd | 134 man/MSTEdges.Rd | 146 man/MakeTreeBinary.Rd | 108 man/MatchEdges.Rd | 137 man/MatchStrings.Rd | 80 man/MatrixToPhyDat.Rd | 156 man/MorphoBankDecode.Rd | 58 man/N1Spr.Rd | 76 man/NDescendants.Rd | 92 man/NJTree.Rd | 82 man/NPartitionPairs.Rd | 102 man/NRooted.Rd | 268 - man/NSplits.Rd | 171 man/NTip.Rd | 139 man/NewickTree.Rd | 54 man/Neworder.Rd | 128 man/NodeDepth.Rd | 126 man/NodeNumbers.Rd | 113 man/NodeOrder.Rd | 108 man/PairwiseDistances.Rd | 82 man/PathLengths.Rd | 117 man/PhyToString.Rd | 212 man/PolarizeSplits.Rd | 70 man/ReadCharacters.Rd | 288 - man/ReadMrBayesTrees.Rd | 110 man/ReadTntTree.Rd | 248 man/Renumber.Rd | 118 man/RenumberTips.Rd | 140 man/Reorder.Rd | 556 +- man/Reweight.Rd | 156 man/RightmostCharacter.Rd | 72 man/RoguePlot.Rd | 240 man/RootNode.Rd | 104 man/RootTree.Rd | 190 man/SampleOne.Rd | 84 man/SortTree.Rd | 184 man/SplitConsistent.Rd | 90 man/SplitFrequency.Rd | 161 man/SplitInformation.Rd | 247 man/SplitMatchProbability.Rd | 94 man/Splits.Rd | 216 man/SplitsInBinaryTree.Rd | 161 man/Stemwardness.Rd | 198 man/Subsplit.Rd | 96 man/Subtree.Rd | 122 man/SupportColour.Rd | 142 man/TipLabels.Rd | 251 man/TipTimedTree.Rd | 140 man/TipsInSplits.Rd | 144 man/TopologyOnly.Rd | 46 man/TotalCopheneticIndex.Rd | 188 man/TreeIsRooted.Rd | 85 man/TreeNumber.Rd | 421 - man/TreeShape.Rd | 318 - man/TreeTools-package.Rd | 80 man/Treeness.Rd | 113 man/TreesMatchingSplit.Rd | 92 man/TreesMatchingTree.Rd | 98 man/TrivialSplits.Rd | 96 man/TrivialTree.Rd | 124 man/Unquote.Rd | 64 man/UnrootedTreesMatchingSplit.Rd | 96 man/UnshiftTree.Rd | 116 man/WriteTntCharacters.Rd | 140 man/as.Newick.Rd | 96 man/as.multiPhylo.Rd | 106 man/brewer.Rd | 66 man/dot-RandomParent.Rd | 54 man/doubleFactorials.Rd | 52 man/edge_to_splits.Rd | 98 man/is.TreeNumber.Rd | 64 man/logDoubleFactorials.Rd | 46 man/match.Splits.Rd | 136 man/match.multiPhylo.Rd | 144 man/nRootedShapes.Rd | 56 man/print.TreeNumber.Rd | 44 man/root_on_node.Rd | 58 man/sapply64.Rd | 164 man/sort.multiPhylo.Rd | 114 man/xor.Rd | 62 src/RcppExports-manual.cpp | 6 src/RcppExports.cpp | 55 src/consensus.cpp | 169 src/int_to_tree.cpp | 168 src/node_depth.cpp |only src/renumber_tips.cpp |only src/splits.cpp | 97 src/tips_in_splits.cpp | 4 tests/figs/rogueplot.svg | 68 tests/spelling.R | 8 tests/testthat.R | 8 tests/testthat/_snaps/RoguePlot/rogueplot-poly.svg | 82 tests/testthat/_snaps/RoguePlot/rogueplot-simple.svg | 94 tests/testthat/_snaps/RoguePlot/rogueplot-trees1.svg | 106 tests/testthat/_snaps/RoguePlot/rogueplot-trees2.svg | 82 tests/testthat/_snaps/Support/labelsplits-nameless.svg | 172 tests/testthat/_snaps/Support/labelsplits-names.svg | 148 tests/testthat/_snaps/Support/labelsplits.svg | 148 tests/testthat/_snaps/mst/mst-plotting.svg | 142 tests/testthat/_snaps/tree_display/sorted-tree.svg | 270 - tests/testthat/test-AddTip.R | 356 - tests/testthat/test-ArtificialExtinction.R | 94 tests/testthat/test-Cherries.R | 24 tests/testthat/test-ClusterTable.R | 284 - tests/testthat/test-Decompose.R | 152 tests/testthat/test-DropTip.R | 6 tests/testthat/test-EdgeRatio.R |only tests/testthat/test-FirstMatchingSplit.R | 68 tests/testthat/test-ImposeConstraint.R | 275 - tests/testthat/test-KeptPaths.R | 40 tests/testthat/test-KeptVerts.R | 172 tests/testthat/test-LongBranchScore.R | 36 tests/testthat/test-MatchNodes.R | 148 tests/testthat/test-MatchStrings.R | 26 tests/testthat/test-PathLengths.R | 70 tests/testthat/test-PhyToString.R | 150 tests/testthat/test-RUtreebalance.R | 128 tests/testthat/test-ReadMrBayes.R | 8 tests/testthat/test-ReadTntTree.R | 290 - tests/testthat/test-Reweight.R | 92 tests/testthat/test-RoguePlot.R | 362 - tests/testthat/test-SplitConsistent.R | 72 tests/testthat/test-SplitFunctions.R | 452 - tests/testthat/test-Splits.R | 1154 ++-- tests/testthat/test-Stemwardness.R | 28 tests/testthat/test-Support.R | 162 tests/testthat/test-TipTimedTree.R | 28 tests/testthat/test-TopologyOnly.R | 54 tests/testthat/test-TotalCopheneticIndex.R | 152 tests/testthat/test-TreeNumber.R | 293 - tests/testthat/test-Treeness.R | 38 tests/testthat/test-as.matrix.R | 14 tests/testthat/test-as.multiPhylo.R | 70 tests/testthat/test-combinatorics.R | 178 tests/testthat/test-consensus.R | 236 tests/testthat/test-helper_functions.R | 22 tests/testthat/test-information.R | 76 tests/testthat/test-int_to_tree.cpp.R | 129 tests/testthat/test-match.R | 58 tests/testthat/test-mst.R | 84 tests/testthat/test-parsers.R | 442 - tests/testthat/test-phylo.R | 112 tests/testthat/test-root_tree.h.R | 226 tests/testthat/test-sort.R | 44 tests/testthat/test-split_analysis.R | 22 tests/testthat/test-splits.cpp.R | 74 tests/testthat/test-tree_ancestors.R | 40 tests/testthat/test-tree_comparison.R | 48 tests/testthat/test-tree_descendants.R | 168 tests/testthat/test-tree_display.R | 128 tests/testthat/test-tree_generation-random.R | 90 tests/testthat/test-tree_generation.R | 438 - tests/testthat/test-tree_information.R | 38 tests/testthat/test-tree_numbering.R | 102 tests/testthat/test-tree_properties.R | 364 - tests/testthat/test-tree_rearrange.R | 830 +-- tests/testthat/test-tree_shape.R | 318 - tests/testthat/test-tree_write.R | 98 tests/testthat/testdata/nonPreCons.nex | 48 vignettes/filesystem-navigation.Rmd | 104 vignettes/load-data.Rmd | 428 - vignettes/load-trees.Rmd | 250 291 files changed, 30003 insertions(+), 29147 deletions(-)
Title: Amos Tanay's Group High Performance Statistical Utilities
Description: A collection of high performance utilities to compute
distance, correlation, auto correlation, clustering and other tasks.
Contains graph clustering algorithm described in "MetaCell: analysis
of single-cell RNA-seq data using K-nn graph partitions" (Yael Baran,
Akhiad Bercovich, Arnau Sebe-Pedros, Yaniv Lubling, Amir Giladi, Elad
Chomsky, Zohar Meir, Michael Hoichman, Aviezer Lifshitz & Amos Tanay,
2019 <doi:10.1186/s13059-019-1812-2>).
Author: Michael Hoichman [aut],
Aviezer Lifshitz [aut, cre]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between tgstat versions 2.3.29 dated 2025-11-12 and 2.3.32 dated 2026-03-20
DESCRIPTION | 8 ++-- MD5 | 14 ++++---- NEWS.md | 11 ++++++ R/knn.R | 3 - R/zzz.R | 3 - src/tgstat.cpp | 69 +++++++++++++++++++++++++++++++++++++++--- src/tgstat.h | 1 tests/testthat/test-cor-knn.R |only tests/testthat/test-tmpdir.R |only 9 files changed, 90 insertions(+), 19 deletions(-)
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation ('ODE') models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
'VODE' and 'LSODA' are in the public domain. The information is available
in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [aut],
Alan Hindmarsh [ctb],
Arun Srinivasan [ctb],
Awad H. Al-Mohy [ctb],
Bill Denney [ctb] ,
Cleve Moler [ctb],
David Cooley [ctb],
Drew Schmidt [ctb],
Ernst Hairer [ctb],
Gabriel Staples [ctb],
Gerhard W [...truncated...]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2 versions 5.0.1 dated 2025-12-09 and 5.0.2 dated 2026-03-20
DESCRIPTION | 15 MD5 | 338 +++++----- NAMESPACE | 7 NEWS.md | 29 R/CTS.R | 2 R/RcppExports.R | 38 - R/dsl.R | 12 R/err.R | 8 R/et.R | 49 + R/geom-amt.R | 7 R/mix.R | 4 R/mu.R | 2 R/piping-model.R | 6 R/piping.R | 37 + R/print.R | 2 R/reexport.R | 5 R/rudf.R | 14 R/rxParams.R | 6 R/rxRaw.R | 62 + R/rxShiny.R | 4 R/rxUiGet.R | 5 R/rxode-options.R | 71 -- R/rxode2.R | 47 + R/rxode2_md5.R | 2 R/rxrandom.R | 66 +- R/rxsolve.R | 4 R/summary.R | 4 R/symengine.R | 2 R/ui-assign-parts.R | 10 R/ui-bind.R | 3 R/ui-rename.R | 7 R/ui.R | 17 R/utils.R | 13 R/version.R | 7 README.md | 24 build/partial.rdb |binary build/vignette.rds |binary inst/doc/rxode2-syntax.html | 717 +++++++++++++--------- inst/include/rxode2.h | 2 inst/include/rxode2_model_shared.c | 2 inst/include/rxode2parseGetTime.h | 58 + inst/include/rxode2parseHandleEvid.h | 22 inst/include/rxode2parseStruct.h | 10 inst/include/rxode2parseVer.h | 4 inst/tools/workaround.R | 3 inst/tutorials/rxode2-00-syntax/RxODE00syntax.Rmd | 110 +-- inst/tutorials/rxode2-01-events/rxode01events.Rmd | 380 +++++------ man/dot-rxGetSeed.Rd |only man/dot-rxSetSeed.Rd |only man/eventTable.Rd | 10 man/ini.Rd | 14 man/mix.Rd | 4 man/reexports.Rd | 3 man/rmdhunks/rxode2-intro-chunk.Rmd | 24 man/rxAppendModel.Rd | 3 man/rxDemoteAddErr.Rd | 6 man/rxErrTypeCombine.Rd | 2 man/rxFun.Rd | 2 man/rxGetDefaultSerialize.Rd |only man/rxGetSeed.Rd | 2 man/rxGetSerialType_.Rd | 2 man/rxOldQsDes.Rd |only man/rxRawToC.Rd | 6 man/rxRename.Rd | 6 man/rxSetCovariateNamesForPiping.Rd | 4 man/rxSyncOptions.Rd | 3 man/rxVersion.Rd | 8 man/rxode2.Rd | 81 +- man/stat_amt.Rd | 7 src/RcppExports.cpp | 118 +-- src/approx.cpp | 2 src/codegen.c | 47 - src/codegen2.h | 2 src/forder.cpp | 8 src/handle_evid.cpp | 9 src/init.c | 5 src/linCmt.cpp | 2 src/macros2micros.h | 1 src/par_solve.cpp | 340 +++++++++- src/par_solve.h | 55 + src/qs.cpp | 14 src/rxDerived.cpp | 12 src/rxode2_df.cpp | 18 src/seed.cpp | 62 - src/utilc.cpp | 78 +- tests/testthat.R | 4 tests/testthat/_problems |only tests/testthat/test-001-sum.R | 2 tests/testthat/test-100-cmt.R | 6 tests/testthat/test-alag.R | 30 tests/testthat/test-as-ini.R | 18 tests/testthat/test-backward.R | 10 tests/testthat/test-bad-dose.R | 8 tests/testthat/test-cmt-order.R | 10 tests/testthat/test-cov.R | 18 tests/testthat/test-data-table.R | 6 tests/testthat/test-deSolve-events.R | 4 tests/testthat/test-dollar-names.R | 6 tests/testthat/test-dplyr.R | 24 tests/testthat/test-et.R | 137 ++-- tests/testthat/test-etTrans.R | 28 tests/testthat/test-evid2.R | 10 tests/testthat/test-evid3.R | 24 tests/testthat/test-expand-grid.R | 12 tests/testthat/test-focei-variances.R | 126 +-- tests/testthat/test-iCov.R | 12 tests/testthat/test-ind-lin.R | 18 tests/testthat/test-ini.R | 8 tests/testthat/test-interp.R | 4 tests/testthat/test-keep.R | 43 - tests/testthat/test-lag.R | 58 - tests/testthat/test-lhs-ifelse.R | 8 tests/testthat/test-lincmt-solve.R | 434 ++++++------- tests/testthat/test-llik.R | 104 +-- tests/testthat/test-load.R | 1 tests/testthat/test-logit.R | 6 tests/testthat/test-missing-evid.R | 16 tests/testthat/test-mix.R | 36 - tests/testthat/test-model-rate.R | 86 +- tests/testthat/test-mtime.R | 134 ++++ tests/testthat/test-mu2.R | 4 tests/testthat/test-nearpd.R | 6 tests/testthat/test-nesting.R | 10 tests/testthat/test-newind.R | 8 tests/testthat/test-nmtest.R | 4 tests/testthat/test-nopred-ui.R | 2 tests/testthat/test-occ.R | 30 tests/testthat/test-off.R | 16 tests/testthat/test-par-solve.R | 6 tests/testthat/test-parsing.R | 10 tests/testthat/test-pipeline.R | 52 - tests/testthat/test-piping-ini.R | 50 - tests/testthat/test-print.R | 26 tests/testthat/test-rbind.R | 12 tests/testthat/test-resample.R | 28 tests/testthat/test-reset.R | 28 tests/testthat/test-rxIs.R | 24 tests/testthat/test-rxode-issue-005.R | 6 tests/testthat/test-rxode-issue-067.R | 3 tests/testthat/test-rxode-issue-163.R | 8 tests/testthat/test-rxode-issue-272.R | 10 tests/testthat/test-rxode-issue-349.R | 4 tests/testthat/test-rxode-issue-352.R | 12 tests/testthat/test-rxode-issue-375.R | 28 tests/testthat/test-rxode-issue-435.R | 16 tests/testthat/test-rxode-issue-445.R | 32 tests/testthat/test-rxode-issue-450.R | 8 tests/testthat/test-rxui-ctl.R | 8 tests/testthat/test-seq.R | 36 - tests/testthat/test-sim-zeros.R | 20 tests/testthat/test-solComp.R | 34 - tests/testthat/test-state-dep-dur.R |only tests/testthat/test-state-dep-f.R |only tests/testthat/test-state-dep-lag.R |only tests/testthat/test-state-dep-rate.R |only tests/testthat/test-state-dep-sort.R |only tests/testthat/test-steady-state.R | 118 +-- tests/testthat/test-symmetric.R | 2 tests/testthat/test-tad.R | 60 - tests/testthat/test-transit.R | 4 tests/testthat/test-ui-assign-model-parts.R | 10 tests/testthat/test-ui-drop-lines.R | 14 tests/testthat/test-ui-dv.R | 6 tests/testthat/test-ui-fix-unfix.R | 16 tests/testthat/test-ui-ini-lotri.R | 4 tests/testthat/test-ui-ini-str.R | 4 tests/testthat/test-ui-mod-functions.R | 36 - tests/testthat/test-ui-piping-single-endpoint.R | 12 tests/testthat/test-ui-piping.R | 264 ++++---- tests/testthat/test-ui-promote.R | 10 tests/testthat/test-ui-rename.R | 118 +++ tests/testthat/test-ui-simulation.R | 116 +-- tests/testthat/test-utils.R | 4 tests/testthat/test-zzzz-plot.R | 466 +++++++------- tests/testthat/testthat-problems.rds |only 175 files changed, 3706 insertions(+), 2747 deletions(-)
Title: R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also
see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Author: Dirk Eddelbuettel [aut, cre] ,
Gabi Melman [aut] ,
Victor Zverovic [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.27 dated 2026-02-12 and 0.0.28 dated 2026-03-20
ChangeLog | 13 +++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 7 +++++++ src/RcppExports.cpp | 32 ++++++++++++++++---------------- 7 files changed, 46 insertions(+), 26 deletions(-)
Title: A Fast and Flexible Pipeline for Text Classification
Description: A high-level pipeline that simplifies text classification into three streamlined steps:
preprocessing, model training, and standardized prediction.
It unifies the interface for multiple algorithms (including 'glmnet', 'ranger',
'xgboost', and 'naivebayes') and memory-efficient sparse matrix vectorization
methods (Bag-of-Words, Term Frequency, TF-IDF, and Binary). Users can go from
raw text to a fully evaluated sentiment model, complete with ROC-optimized
thresholds, in just a few function calls. The resulting model artifact
automatically aligns the vocabulary of new datasets during the prediction phase,
safely appending predicted classes and probability matrices directly to the
user's original dataframe to preserve metadata.
Author: Alabhya Dahal [aut, cre]
Maintainer: Alabhya Dahal <alabhya.dahal@gmail.com>
Diff between quickSentiment versions 0.3.1 dated 2026-03-01 and 0.3.2 dated 2026-03-20
quickSentiment-0.3.1/quickSentiment/R/evaluation.R |only quickSentiment-0.3.1/quickSentiment/man/evaluate_metrics.Rd |only quickSentiment-0.3.2/quickSentiment/DESCRIPTION | 12 - quickSentiment-0.3.2/quickSentiment/LICENSE | 4 quickSentiment-0.3.2/quickSentiment/MD5 | 29 +-- quickSentiment-0.3.2/quickSentiment/NAMESPACE | 11 - quickSentiment-0.3.2/quickSentiment/NEWS.md | 19 -- quickSentiment-0.3.2/quickSentiment/R/evaluate_performance.R |only quickSentiment-0.3.2/quickSentiment/R/pipeline.R | 59 +------ quickSentiment-0.3.2/quickSentiment/R/prediction.R | 22 +- quickSentiment-0.3.2/quickSentiment/R/print.quickSentiment_eval.R |only quickSentiment-0.3.2/quickSentiment/R/route_prediction.R | 8 quickSentiment-0.3.2/quickSentiment/README.md | 30 +-- quickSentiment-0.3.2/quickSentiment/build/vignette.rds |binary quickSentiment-0.3.2/quickSentiment/inst/doc/introduction-to-quickSentiment.html | 82 +++++----- quickSentiment-0.3.2/quickSentiment/man/evaluate_performance.Rd |only quickSentiment-0.3.2/quickSentiment/man/plot.quickSentiment_prc.Rd |only quickSentiment-0.3.2/quickSentiment/man/plot.quickSentiment_roc.Rd |only quickSentiment-0.3.2/quickSentiment/man/predict_sentiment.Rd | 2 19 files changed, 122 insertions(+), 156 deletions(-)
More information about quickSentiment at CRAN
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