Title: Proteomics Data Analysis Functions
Description: Data analysis of proteomics experiments by mass spectrometry is supported by this collection of functions mostly dedicated to the analysis of (bottom-up) quantitative (XIC) data.
Fasta-formatted proteomes (eg from UniProt Consortium <doi:10.1093/nar/gky1049>) can be read with automatic parsing and multiple annotation types (like species origin, abbreviated gene names, etc) extracted.
Initial results from multiple software for protein (and peptide) quantitation can be imported (to a common format):
MaxQuant (Tyanova et al 2016 <doi:10.1038/nprot.2016.136>),
Dia-NN (Demichev et al 2020 <doi:10.1038/s41592-019-0638-x>),
Fragpipe (da Veiga et al 2020 <doi:10.1038/s41592-020-0912-y>),
ionbot (Degroeve et al 2021 <doi:10.1101/2021.07.02.450686>),
MassChroq (Valot et al 2011 <doi:10.1002/pmic.201100120>),
OpenMS (Strauss et al 2021 <doi:10.1038/nmeth.3959>),
ProteomeDiscoverer (Orsburn 2021 <doi:10.3390/proteomes9010015>),
Proline (Bouyssie et a [...truncated...]
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrProteo versions 2.0.0.2 dated 2026-03-11 and 2.0.2 dated 2026-04-29
DESCRIPTION | 24 MD5 | 46 - R/combineMultFilterNAimput.R | 132 +- R/extractTestingResults.R | 150 ++- R/matrixNAneighbourImpute.R | 11 R/readProteomeDiscovererFile.R | 2 R/readSampleMetaData.R | 2 R/readSdrf.R | 20 R/removeSampleInList.R | 43 R/testRobustToNAimputation.R | 352 +++---- build/vignette.rds |binary inst/doc/wrProteoVignette1.R | 10 inst/doc/wrProteoVignette1.Rmd | 25 inst/doc/wrProteoVignette1.html | 598 +++---------- inst/doc/wrProteoVignetteUPS1.R | 4 inst/doc/wrProteoVignetteUPS1.Rmd | 8 inst/doc/wrProteoVignetteUPS1.html | 1679 ++++++++++++++++--------------------- man/combineMultFilterNAimput.Rd | 30 man/extractTestingResults.Rd | 35 man/matrixNAneighbourImpute.Rd | 11 man/readSdrf.Rd | 4 man/testRobustToNAimputation.Rd | 18 vignettes/wrProteoVignette1.Rmd | 25 vignettes/wrProteoVignetteUPS1.Rmd | 8 24 files changed, 1489 insertions(+), 1748 deletions(-)
Title: Density Ratio Estimation
Description: Density ratio estimation. The estimated density ratio
function can be used in many applications such as anomaly detection,
change-point detection, covariate shift adaptation. The implemented
methods are uLSIF (Hido et al. (2011)
<doi:10.1007/s10115-010-0283-2>), RuLSIF (Yamada et al. (2011)
<doi:10.1162/NECO_a_00442>), and KLIEP (Sugiyama et al. (2007)
<doi:10.1007/s10463-008-0197-x>).
Author: Koji Makiyama [aut, cre]
Maintainer: Koji Makiyama <hoxo.smile@gmail.com>
Diff between densratio versions 0.2.1 dated 2019-06-30 and 0.3.1 dated 2026-04-29
DESCRIPTION | 27 LICENSE | 4 MD5 | 70 NAMESPACE | 22 NEWS.md | 28 R/KLIEP.R | 114 - R/KLIEP_compute_score.R | 42 R/KLIEP_optimize_alpha.R | 86 R/KLIEP_search_sigma.R | 38 R/KLIEP_search_sigma_list.R | 28 R/RuLSIF.R | 134 - R/RuLSIF_search_sigma_and_lambda.R | 90 R/compute_kernel_Gaussian.R | 42 R/densratio.R | 118 - R/print.R | 88 R/uLSIF.R | 48 README.md | 592 ++--- build/vignette.rds |binary inst/doc/densratio.R | 152 - inst/doc/densratio.Rmd | 476 ++-- inst/doc/densratio.html | 1138 +++++----- man/KLIEP.Rd | 55 man/RuLSIF.Rd | 72 man/densratio.Rd | 102 man/figures/README-basics-compute-estimated-density-ratio-1.png |binary man/figures/README-compare-2d-1.png |binary man/figures/README-compare-true-estimate-1.png |binary man/figures/README-compute-estimated-density-ratio-1.png |binary man/squared_euclid_distance.Rd | 38 man/uLSIF.Rd | 63 tests/testthat.R | 8 tests/testthat/test-KLIEP.R | 55 tests/testthat/test-RuLSIF.R | 57 tests/testthat/test-compute_kernel_Gaussian.R | 28 tests/testthat/test-uLSIF.R | 55 vignettes/densratio.Rmd | 476 ++-- 36 files changed, 2273 insertions(+), 2073 deletions(-)
Title: A Docking Layout Manager for 'blockr'
Description: Building on the docking layout manager provided by 'dockViewR',
this provides a flexible front-end to 'blockr.core'. It provides an extension mechanism which allows for providing means to manipulate a board
object via panel-based user interface components.
Author: Nicolas Bennett [aut, cre],
David Granjon [aut]
Maintainer: Nicolas Bennett <nicolas@cynkra.com>
Diff between blockr.dock versions 0.1.0 dated 2025-12-11 and 0.1.1 dated 2026-04-29
blockr.dock-0.1.0/blockr.dock/inst/examples/dock |only blockr.dock-0.1.1/blockr.dock/DESCRIPTION | 13 blockr.dock-0.1.1/blockr.dock/MD5 | 95 blockr.dock-0.1.1/blockr.dock/NAMESPACE | 35 blockr.dock-0.1.1/blockr.dock/NEWS.md | 25 blockr.dock-0.1.1/blockr.dock/R/action-block.R | 495 ++-- blockr.dock-0.1.1/blockr.dock/R/action-class.R | 282 +- blockr.dock-0.1.1/blockr.dock/R/action-link.R | 172 - blockr.dock-0.1.1/blockr.dock/R/action-modal.R | 67 blockr.dock-0.1.1/blockr.dock/R/action-stack.R | 295 +- blockr.dock-0.1.1/blockr.dock/R/action-utils.R | 32 blockr.dock-0.1.1/blockr.dock/R/block-meta.R | 54 blockr.dock-0.1.1/blockr.dock/R/block-ui.R | 66 blockr.dock-0.1.1/blockr.dock/R/board-server.R | 1085 ++++++++-- blockr.dock-0.1.1/blockr.dock/R/board-ui.R | 109 - blockr.dock-0.1.1/blockr.dock/R/dock-board.R | 104 blockr.dock-0.1.1/blockr.dock/R/ext-ui.R | 29 blockr.dock-0.1.1/blockr.dock/R/layout-class.R | 39 blockr.dock-0.1.1/blockr.dock/R/layouts-class.R |only blockr.dock-0.1.1/blockr.dock/R/plugin-block.R | 143 - blockr.dock-0.1.1/blockr.dock/R/utils-dock.R | 36 blockr.dock-0.1.1/blockr.dock/R/utils-id.R | 28 blockr.dock-0.1.1/blockr.dock/R/utils-misc.R | 24 blockr.dock-0.1.1/blockr.dock/R/utils-serdes.R | 47 blockr.dock-0.1.1/blockr.dock/R/utils-ui.R | 18 blockr.dock-0.1.1/blockr.dock/R/view-ui.R |only blockr.dock-0.1.1/blockr.dock/README.md | 97 blockr.dock-0.1.1/blockr.dock/build |only blockr.dock-0.1.1/blockr.dock/inst/assets/css/blockr-dock.css | 660 ++++-- blockr.dock-0.1.1/blockr.dock/inst/assets/js/show-hide-block.js | 5 blockr.dock-0.1.1/blockr.dock/inst/assets/js/view-binding.js |only blockr.dock-0.1.1/blockr.dock/inst/doc |only blockr.dock-0.1.1/blockr.dock/inst/examples/empty |only blockr.dock-0.1.1/blockr.dock/inst/examples/locked-dock |only blockr.dock-0.1.1/blockr.dock/inst/examples/single-page |only blockr.dock-0.1.1/blockr.dock/inst/examples/views |only blockr.dock-0.1.1/blockr.dock/man/action.Rd | 87 blockr.dock-0.1.1/blockr.dock/man/dock.Rd | 26 blockr.dock-0.1.1/blockr.dock/man/figures |only blockr.dock-0.1.1/blockr.dock/man/view.Rd |only blockr.dock-0.1.1/blockr.dock/tests/testthat/test-action-block.R | 73 blockr.dock-0.1.1/blockr.dock/tests/testthat/test-action-class.R | 51 blockr.dock-0.1.1/blockr.dock/tests/testthat/test-action-link.R | 78 blockr.dock-0.1.1/blockr.dock/tests/testthat/test-action-stack.R | 117 - blockr.dock-0.1.1/blockr.dock/tests/testthat/test-block-meta.R | 23 blockr.dock-0.1.1/blockr.dock/tests/testthat/test-board-class.R | 46 blockr.dock-0.1.1/blockr.dock/tests/testthat/test-board-server.R | 240 +- blockr.dock-0.1.1/blockr.dock/tests/testthat/test-board-ui.R | 2 blockr.dock-0.1.1/blockr.dock/tests/testthat/test-layouts-class.R |only blockr.dock-0.1.1/blockr.dock/tests/testthat/test-utils-misc.R | 16 blockr.dock-0.1.1/blockr.dock/tests/testthat/test-utils-serdes.R | 18 blockr.dock-0.1.1/blockr.dock/tests/testthat/test-utils-serve.R | 2 blockr.dock-0.1.1/blockr.dock/vignettes |only 53 files changed, 3251 insertions(+), 1583 deletions(-)
Title: Generalised Linear Mixed Models in R
Description: Specification, analysis, simulation, and fitting of generalised linear mixed models.
Includes Markov Chain Monte Carlo Maximum likelihood model fitting for a range of models,
non-linear fixed effect specifications, a wide range of flexible covariance functions that can be combined arbitrarily,
robust and bias-corrected standard error estimation, power calculation, data simulation, and more.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between glmmrBase versions 1.3.0 dated 2026-03-31 and 1.4.0 dated 2026-04-29
glmmrBase-1.3.0/glmmrBase/R/stanmodels.R |only glmmrBase-1.3.0/glmmrBase/README.md |only glmmrBase-1.3.0/glmmrBase/configure |only glmmrBase-1.3.0/glmmrBase/configure.win |only glmmrBase-1.3.0/glmmrBase/inst/cmdstan |only glmmrBase-1.3.0/glmmrBase/inst/include/glmmr/sparse.h |only glmmrBase-1.3.0/glmmrBase/inst/include/stan_meta_header.hpp |only glmmrBase-1.3.0/glmmrBase/inst/stan |only glmmrBase-1.3.0/glmmrBase/src/stanExports_mcml.cc |only glmmrBase-1.3.0/glmmrBase/src/stanExports_mcml.h |only glmmrBase-1.4.0/glmmrBase/DESCRIPTION | 15 glmmrBase-1.4.0/glmmrBase/MD5 | 107 - glmmrBase-1.4.0/glmmrBase/NAMESPACE | 4 glmmrBase-1.4.0/glmmrBase/R/R6Model.R | 985 +--------- glmmrBase-1.4.0/glmmrBase/R/R6covariance.R | 4 glmmrBase-1.4.0/glmmrBase/R/RcppExports.R | 36 glmmrBase-1.4.0/glmmrBase/R/extrafunctions.R | 32 glmmrBase-1.4.0/glmmrBase/build/partial.rdb |binary glmmrBase-1.4.0/glmmrBase/inst/include/glmmr.h | 10 glmmrBase-1.4.0/glmmrBase/inst/include/glmmr/matrixw.hpp | 10 glmmrBase-1.4.0/glmmrBase/inst/include/glmmr/model.hpp | 25 glmmrBase-1.4.0/glmmrBase/inst/include/glmmr/modelbits.hpp | 3 glmmrBase-1.4.0/glmmrBase/inst/include/glmmr/modelmatrix.hpp | 686 ++++++ glmmrBase-1.4.0/glmmrBase/inst/include/glmmr/modeloptim.hpp | 293 +- glmmrBase-1.4.0/glmmrBase/inst/include/glmmr/randomeffects.hpp | 122 + glmmrBase-1.4.0/glmmrBase/inst/include/glmmr/spdecovariance.hpp |only glmmrBase-1.4.0/glmmrBase/man/Beta.Rd | 34 glmmrBase-1.4.0/glmmrBase/man/Model.Rd | 571 +---- glmmrBase-1.4.0/glmmrBase/man/Salamanders.Rd | 28 glmmrBase-1.4.0/glmmrBase/man/SimGeospat.Rd | 48 glmmrBase-1.4.0/glmmrBase/man/SimTrial.Rd | 50 glmmrBase-1.4.0/glmmrBase/man/coef.Model.Rd | 38 glmmrBase-1.4.0/glmmrBase/man/coef.mcml.Rd | 38 glmmrBase-1.4.0/glmmrBase/man/confint.mcml.Rd | 38 glmmrBase-1.4.0/glmmrBase/man/family.Model.Rd | 40 glmmrBase-1.4.0/glmmrBase/man/family.mcml.Rd | 38 glmmrBase-1.4.0/glmmrBase/man/fitted.Model.Rd | 44 glmmrBase-1.4.0/glmmrBase/man/fitted.mcml.Rd | 40 glmmrBase-1.4.0/glmmrBase/man/fixed.effects.Rd | 34 glmmrBase-1.4.0/glmmrBase/man/formula.Model.Rd | 40 glmmrBase-1.4.0/glmmrBase/man/formula.mcml.Rd | 44 glmmrBase-1.4.0/glmmrBase/man/hessian_from_formula.Rd | 80 glmmrBase-1.4.0/glmmrBase/man/hsgp_rescale.Rd | 58 glmmrBase-1.4.0/glmmrBase/man/lme4_to_glmmr.Rd | 60 glmmrBase-1.4.0/glmmrBase/man/logLik.Model.Rd | 38 glmmrBase-1.4.0/glmmrBase/man/logLik.mcml.Rd | 50 glmmrBase-1.4.0/glmmrBase/man/mcml_lmer.Rd | 132 - glmmrBase-1.4.0/glmmrBase/man/mesh_helper.Rd |only glmmrBase-1.4.0/glmmrBase/man/predict.Model.Rd | 62 glmmrBase-1.4.0/glmmrBase/man/predict.mcml.Rd | 40 glmmrBase-1.4.0/glmmrBase/man/random.effects.Rd | 34 glmmrBase-1.4.0/glmmrBase/man/residuals.Model.Rd | 56 glmmrBase-1.4.0/glmmrBase/man/residuals.mcml.Rd | 50 glmmrBase-1.4.0/glmmrBase/man/summary.Model.Rd | 42 glmmrBase-1.4.0/glmmrBase/man/vcov.Model.Rd | 44 glmmrBase-1.4.0/glmmrBase/man/vcov.mcml.Rd | 46 glmmrBase-1.4.0/glmmrBase/src/Makevars | 8 glmmrBase-1.4.0/glmmrBase/src/Makevars.win | 8 glmmrBase-1.4.0/glmmrBase/src/RcppExports.cpp | 126 + glmmrBase-1.4.0/glmmrBase/src/model_module.cpp | 269 ++ 60 files changed, 2368 insertions(+), 2292 deletions(-)
Title: Automatic Construction of Forced-Choice Tests
Description: Forced-choice (FC) response has gained increasing popularity
and interest for its resistance to faking when well-designed (Cao &
Drasgow, 2019 <doi:10.1037/apl0000414>). To established well-designed
FC scales, typically each item within a block should measure different
trait and have similar level of social desirability (Zhang et al.,
2020 <doi:10.1177/1094428119836486>). Recent study also suggests the
importance of high inter-item agreement of social desirability between
items within a block (Pavlov et al., 2021 <doi:10.31234/osf.io/hmnrc>).
In addition to this, FC developers may
also need to maximize factor loading differences (Brown &
Maydeu-Olivares, 2011 <doi:10.1177/0013164410375112>) or minimize item
location differences (Cao & Drasgow, 2019 <doi:10.1037/apl0000414>)
depending on scoring models. Decision of which items should be
assigned to the same block, termed item pairing, is thus critical to
the quality of an FC test. This pairing p [...truncated...]
Author: Mengtong Li [cre, aut] ,
Tianjun Sun [aut] ,
Bo Zhang [aut]
Maintainer: Mengtong Li <mt_li@fudan.edu.cn>
This is a re-admission after prior archival of version 0.2.0.1002 dated 2025-03-13
Diff between autoFC versions 0.2.0.1002 dated 2025-03-13 and 0.2.0.1010 dated 2026-04-29
DESCRIPTION | 22 ++++----- MD5 | 27 ++++++----- NAMESPACE | 5 +- R/bp.coeff.raw.R |only R/cal_block_energy_with_iia.R | 1 R/convert_to_TIRT_response.R | 17 +++---- R/fit_TIRT_model.R | 8 +-- R/get_iia.R | 75 +++++++++++++++---------------- R/gwet.ac1.raw.R |only R/identity.weights.R |only R/linear.weights.R |only R/quadratic.weights.R |only R/sa_pairing_generalized.R | 1 inst/doc/autoFC.html | 93 +++++++++++++++++++++++++++++++++------ man/cal_block_energy_with_iia.Rd | 1 man/convert_to_TIRT_response.Rd | 14 ++--- man/fit_TIRT_model.Rd | 1 17 files changed, 167 insertions(+), 98 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Bryce Mecum [aut],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb], [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 23.0.1.2 dated 2026-03-25 and 24.0.0 dated 2026-04-29
arrow-23.0.1.2/arrow/tools/checksums/r-libarrow-darwin-arm64-23.0.1.zip.sha512 |only arrow-23.0.1.2/arrow/tools/checksums/r-libarrow-darwin-x86_64-23.0.1.zip.sha512 |only arrow-23.0.1.2/arrow/tools/checksums/r-libarrow-linux-x86_64-23.0.1.zip.sha512 |only arrow-23.0.1.2/arrow/tools/checksums/r-libarrow-windows-x86_64-23.0.1.zip.sha512 |only arrow-23.0.1.2/arrow/tools/cpp/cmake_modules/FindClangTools.cmake |only arrow-23.0.1.2/arrow/tools/cpp/cmake_modules/FindInferTools.cmake |only arrow-23.0.1.2/arrow/tools/cpp/cmake_modules/mimalloc-1138.patch |only arrow-23.0.1.2/arrow/tools/cpp/src/arrow/util/bpacking_simd128_generated_internal.h |only arrow-23.0.1.2/arrow/tools/cpp/src/arrow/util/bpacking_simd256_generated_internal.h |only arrow-23.0.1.2/arrow/tools/cpp/src/arrow/util/span.h |only arrow-23.0.1.2/arrow/tools/cpp/src/parquet/arrow/variant_internal.cc |only arrow-23.0.1.2/arrow/tools/cpp/src/parquet/arrow/variant_internal.h |only arrow-24.0.0/arrow/DESCRIPTION | 8 arrow-24.0.0/arrow/MD5 | 588 +++++----- arrow-24.0.0/arrow/NAMESPACE | 3 arrow-24.0.0/arrow/NEWS.md | 21 arrow-24.0.0/arrow/R/arrow-object.R | 1 arrow-24.0.0/arrow/R/arrow-package.R | 18 arrow-24.0.0/arrow/R/arrowExports.R | 4 arrow-24.0.0/arrow/R/dataset-write.R | 25 arrow-24.0.0/arrow/R/dplyr-filter.R | 121 +- arrow-24.0.0/arrow/R/dplyr-funcs-conditional.R | 282 ++++ arrow-24.0.0/arrow/R/dplyr-funcs-doc.R | 10 arrow-24.0.0/arrow/R/dplyr-funcs-string.R | 17 arrow-24.0.0/arrow/R/ipc-stream.R | 4 arrow-24.0.0/arrow/R/util.R | 18 arrow-24.0.0/arrow/README.md | 1 arrow-24.0.0/arrow/man/acero.Rd | 10 arrow-24.0.0/arrow/man/read_ipc_stream.Rd | 7 arrow-24.0.0/arrow/man/read_json_arrow.Rd | 2 arrow-24.0.0/arrow/man/schema.Rd | 2 arrow-24.0.0/arrow/man/write_dataset.Rd | 5 arrow-24.0.0/arrow/man/write_delim_dataset.Rd | 11 arrow-24.0.0/arrow/src/altrep.cpp | 44 arrow-24.0.0/arrow/src/array_to_vector.cpp | 1 arrow-24.0.0/arrow/src/arrowExports.cpp | 21 arrow-24.0.0/arrow/src/arrow_cpp11.h | 25 arrow-24.0.0/arrow/src/arrow_types.h | 2 arrow-24.0.0/arrow/src/compute-exec.cpp | 23 arrow-24.0.0/arrow/src/config.cpp | 2 arrow-24.0.0/arrow/src/parquet.cpp | 54 arrow-24.0.0/arrow/src/r_to_arrow.cpp | 2 arrow-24.0.0/arrow/tests/testthat/helper-expectation.R | 5 arrow-24.0.0/arrow/tests/testthat/test-Array.R | 13 arrow-24.0.0/arrow/tests/testthat/test-RecordBatch.R | 5 arrow-24.0.0/arrow/tests/testthat/test-Table.R | 2 arrow-24.0.0/arrow/tests/testthat/test-chunked-array.R | 4 arrow-24.0.0/arrow/tests/testthat/test-compute-aggregate.R | 2 arrow-24.0.0/arrow/tests/testthat/test-compute-no-bindings.R | 4 arrow-24.0.0/arrow/tests/testthat/test-dataset-csv.R | 18 arrow-24.0.0/arrow/tests/testthat/test-dataset-write.R | 23 arrow-24.0.0/arrow/tests/testthat/test-dataset.R | 6 arrow-24.0.0/arrow/tests/testthat/test-dplyr-filter.R | 48 arrow-24.0.0/arrow/tests/testthat/test-dplyr-funcs-conditional.R | 363 ++++++ arrow-24.0.0/arrow/tests/testthat/test-dplyr-funcs-string.R | 10 arrow-24.0.0/arrow/tests/testthat/test-duckdb.R | 4 arrow-24.0.0/arrow/tests/testthat/test-filesystem.R | 8 arrow-24.0.0/arrow/tests/testthat/test-memory-pool.R | 2 arrow-24.0.0/arrow/tests/testthat/test-parquet.R | 10 arrow-24.0.0/arrow/tests/testthat/test-s3.R | 4 arrow-24.0.0/arrow/tests/testthat/test-udf.R | 2 arrow-24.0.0/arrow/tools/LICENSE.txt | 24 arrow-24.0.0/arrow/tools/checksums/r-libarrow-darwin-arm64-24.0.0.zip.sha512 |only arrow-24.0.0/arrow/tools/checksums/r-libarrow-darwin-x86_64-24.0.0.zip.sha512 |only arrow-24.0.0/arrow/tools/checksums/r-libarrow-linux-x86_64-24.0.0.zip.sha512 |only arrow-24.0.0/arrow/tools/checksums/r-libarrow-windows-x86_64-24.0.0.zip.sha512 |only arrow-24.0.0/arrow/tools/cpp/Brewfile | 1 arrow-24.0.0/arrow/tools/cpp/CMakeLists.txt | 32 arrow-24.0.0/arrow/tools/cpp/CMakeLists.txt-e |only arrow-24.0.0/arrow/tools/cpp/CMakePresets.json | 31 arrow-24.0.0/arrow/tools/cpp/build-support/fuzzing/generate_corpuses.sh | 18 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arrow-24.0.0/arrow/tools/cpp/src/parquet/types.h | 11 arrow-24.0.0/arrow/tools/cpp/src/parquet/visit_type_inline.h |only arrow-24.0.0/arrow/tools/cpp/src/parquet/xxhasher.cc | 11 arrow-24.0.0/arrow/tools/cpp/src/parquet/xxhasher.h | 1 arrow-24.0.0/arrow/tools/cpp/thirdparty/versions.txt | 65 - arrow-24.0.0/arrow/tools/cpp/tools/parquet/parquet_scan.cc | 2 arrow-24.0.0/arrow/tools/cpp/vcpkg.json | 11 arrow-24.0.0/arrow/tools/dotenv | 15 arrow-24.0.0/arrow/tools/nixlibs.R | 17 arrow-24.0.0/arrow/tools/test-nixlibs.R | 4 311 files changed, 5600 insertions(+), 2965 deletions(-)
Title: Graphics in the Context of Analyzing High-Throughput Data
Description: Additional options for making graphics in the context of analyzing high-throughput data are available here.
This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots,
automatic checking for optimal location of legends in plots, small histograms to insert as legends,
histograms re-transforming axis labels to linear when plotting log2-transformed data,
a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats,
principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples,
generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>,
staggered count plots and generation of mouse-over interactive html pages.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrGraph versions 1.3.13 dated 2026-03-16 and 1.3.15 dated 2026-04-29
wrGraph-1.3.13/wrGraph/man/dot-colorByPvalue.Rd |only wrGraph-1.3.15/wrGraph/DESCRIPTION | 8 wrGraph-1.3.15/wrGraph/MD5 | 23 wrGraph-1.3.15/wrGraph/NAMESPACE | 1 wrGraph-1.3.15/wrGraph/R/MAplotW.R | 658 ++++++++++-------- wrGraph-1.3.15/wrGraph/R/VolcanoPlotW.R | 350 +++------ wrGraph-1.3.15/wrGraph/build/vignette.rds |binary wrGraph-1.3.15/wrGraph/inst/doc/wrGraphVignette1.R | 14 wrGraph-1.3.15/wrGraph/inst/doc/wrGraphVignette1.Rmd | 18 wrGraph-1.3.15/wrGraph/inst/doc/wrGraphVignette1.html | 89 +- wrGraph-1.3.15/wrGraph/man/MAplotW.Rd | 35 wrGraph-1.3.15/wrGraph/man/VolcanoPlotW.Rd | 24 wrGraph-1.3.15/wrGraph/vignettes/wrGraphVignette1.Rmd | 18 13 files changed, 669 insertions(+), 569 deletions(-)
Title: Space Filling Optimal Covariate Designs
Description: We have designed this package to address experimental scenarios involving multiple covariates. It focuses on construction of Optimal Covariate Designs (OCDs), checking space filling property of the developed design. The primary objective of the package is to generate OCDs using four methods viz., M array method, Juxtapose method, Orthogonal Integer Array and Hadamard method. The package also evaluates space filling properties of both the base design and OCDs using the MaxPro criterion, providing a meaningful basis for comparison. In addition, it includes tool to visualize the spread offered by the design points in the form of scatterplot, which help users to assess distribution and coverage of design points.
Author: Neethu RS [aut, ctb],
Cini Varghese [aut, ctb],
Mohd Harun [aut, ctb],
Anindita Datta [aut, ctb],
Ashutosh Dalal [aut, ctb, cre]
Maintainer: Ashutosh Dalal <ashutosh.dalal97@gmail.com>
Diff between SFOCDs versions 1.1.0 dated 2026-04-15 and 1.2.0 dated 2026-04-29
DESCRIPTION | 7 ++-- MD5 | 18 ++++++----- NAMESPACE | 1 R/HadamardOCDs.R | 2 + R/JuxtaOCDs.R | 3 + R/MOCDs.R | 79 +++++++++++++++++++++++++++++++++++++-------------- R/MaxDot.R | 4 +- R/OIAOCDs.R | 4 +- R/reshuffle_des.R |only man/MaxDot.Rd | 2 - man/reshuffle_des.Rd |only 11 files changed, 85 insertions(+), 35 deletions(-)
Title: Constitution of Core Collections by Principal Component Scoring
Strategy
Description: Generate a Core Collection with Principal Component Scoring
Strategy (PCSS) using qualitative and/or quantitative trait data according
to Hamon and Noirot (1990) <https://www.documentation.ird.fr/hor/fdi:36506>,
Noirot et al. (1996) <doi:10.2307/2527837> and Noirot et al. (2003)
<https://www.documentation.ird.fr/hor/fdi:010031886>.
Author: J. Aravind [aut, cre] ,
Anju Mahendru Singh [aut] ,
ICAR-NBGPR [cph]
Maintainer: J. Aravind <j.aravind@icar.org.in>
This is a re-admission after prior archival of version 0.1.0 dated 2025-02-17
Diff between rpcss versions 0.1.0 dated 2025-02-17 and 0.1.1 dated 2026-04-29
DESCRIPTION | 36 MD5 | 50 - NEWS.md | 5 R/biplot.pcss.core.R | 938 +++++++++++------------ R/contrib.pcss.core.R | 684 ++++++++--------- R/coreplot.pcss.core.R | 804 +++++++++++++------- R/generics.R | 2 R/globals.R | 6 R/pcss.core.R | 1383 ++++++++++++++++++----------------- R/print.pcss.core.R | 101 +- R/screeplot.pcss.core.R | 379 ++++----- R/subset.pcss.core.R | 457 +++++++---- R/xtra.R | 88 +- README.md | 112 ++ build/partial.rdb |binary build/rpcss.pdf |binary build/stage23.rdb |binary inst/CITATION | 13 inst/pkgdown.yml | 4 man/biplot.pcss.core.Rd | 138 +-- man/contrib.Rd | 158 +-- man/coreplot.Rd | 88 +- man/figures/README-readme-plot-1.png |binary man/pcss.core.Rd | 66 - man/screeplot.pcss.core.Rd | 77 + man/subset.pcss.core.Rd | 100 +- 26 files changed, 3104 insertions(+), 2585 deletions(-)
Title: Probabilistic Factor Analysis for Spatially-Aware Dimension
Reduction
Description: Probabilistic factor analysis for spatially-aware dimension reduction across multi-section spatial transcriptomics data with millions of spatial locations.
More details can be referred to Wei Liu, et al. (2023) <doi:10.1101/2023.07.11.548486>.
Author: Wei Liu [aut, cre],
Xiao Zhang [aut],
Jin Liu [aut]
Maintainer: Wei Liu <liuweideng@gmail.com>
Diff between ProFAST versions 1.7 dated 2025-12-14 and 1.8 dated 2026-04-29
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 2 +- R/iSCMEB.R | 4 ++-- README.md | 2 ++ inst/doc/CosMx.html | 6 +++--- inst/doc/FASTdlpfc.html | 6 +++--- inst/doc/FASTdlpfc2.html | 6 +++--- inst/doc/FASTsimu.html | 6 +++--- inst/doc/pbmc3k.html | 6 +++--- 10 files changed, 33 insertions(+), 31 deletions(-)
Title: Group Elastic Net Regularized GLMs and GAMs
Description: Efficient algorithms for fitting generalized linear and additive models with group elastic net penalties as described in Helwig (2025) <doi:10.1080/10618600.2024.2362232>. Implements group LASSO, group MCP, and group SCAD with an optional group ridge penalty. Computes the regularization path for linear regression (gaussian), multivariate regression (multigaussian), smoothed support vector machines (svm1), squared support vector machines (svm2), logistic regression (binomial), proportional odds logistic regression (ordinal), multinomial logistic regression (multinomial), log-linear count regression (poisson and negative.binomial), and log-linear continuous regression (gamma and inverse gaussian). Supports default and formula methods for model specification, k-fold cross-validation for tuning the regularization parameters, and nonparametric regression via tensor product reproducing kernel (smoothing spline) basis function expansion.
Author: Nathaniel E. Helwig [aut, cre]
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between grpnet versions 1.1 dated 2026-01-07 and 1.2 dated 2026-04-29
ChangeLog | 28 +++++++++++++++++++ DESCRIPTION | 8 ++--- MD5 | 66 ++++++++++++++++++++++++----------------------- NAMESPACE | 9 +++++- R/R_grpnet_binomial.R | 10 +++---- R/R_grpnet_gamma.R | 10 +++---- R/R_grpnet_gaussian.R | 10 +++---- R/R_grpnet_invgaus.R | 10 +++---- R/R_grpnet_logit.R | 10 +++---- R/R_grpnet_multigaus.R | 10 +++---- R/R_grpnet_multinom.R | 10 +++---- R/R_grpnet_negbin.R | 10 +++---- R/R_grpnet_ordinal.R | 10 +++---- R/R_grpnet_poisson.R | 10 +++---- R/R_grpnet_svm1.R | 10 +++---- R/R_grpnet_svm2.R | 10 +++---- R/cv.compare.R | 4 +- R/cv.grpnet.R | 5 ++- R/cv.grpnet.default.R | 12 ++++---- R/cv.grpnet.formula.R | 5 ++- R/grpnet.R | 12 ++++---- R/grpnet.default.R | 13 +++++++-- R/grpnet.formula.R | 6 +++- R/predict.grpnet.R | 14 ++++----- R/row.kronecker.R | 15 +++++++--- R/summary.cv.grpnet.R |only R/summary.grpnet.R |only R/zzz.R | 4 -- build/partial.rdb |binary man/cv.grpnet.Rd | 38 +++++++++++++++++++++++++++ man/grpnet.Rd | 43 ++++++++++++++++++++++++++++++ man/plot.cv.grpnet.Rd | 5 ++- man/predict.cv.grpnet.Rd | 2 - man/predict.grpnet.Rd | 2 - man/summary.cv.grpnet.Rd |only man/summary.grpnet.Rd |only 36 files changed, 278 insertions(+), 133 deletions(-)
Title: Visualizing Classification Results
Description: Tools to visualize the results of a classification or a regression.
The graphical displays include stacked plots, silhouette plots, quasi residual plots, class maps, predictions plots, and predictions correlation plots.
Implements the techniques described and illustrated in Raymaekers J., Rousseeuw P.J., Hubert M. (2022). Class maps for visualizing classification results. \emph{Technometrics}, 64(2), 151–165. <doi:10.1080/00401706.2021.1927849>
(open access), Raymaekers J., Rousseeuw P.J.(2022). Silhouettes and quasi residual plots for neural nets and tree-based classifiers. \emph{Journal of Computational and Graphical Statistics}, 31(4), 1332–1343. <doi:10.1080/10618600.2022.2050249>, and Rousseeuw, P.J. (2026). Explainable Linear and Generalized Linear Models by the Predictions Plot. The American Statistician, 80, 157-163, <doi:10.1080/00031305.2025.2539235> (open access), and Montalcini, C., Rousseeuw, P.J. (2025). The bixplot: A variation on the boxplot suited for [...truncated...]
Author: Jakob Raymaekers [aut, cre],
Peter Rousseeuw [aut]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
Diff between classmap versions 1.2.6 dated 2025-07-14 and 1.2.7 dated 2026-04-29
DESCRIPTION | 26 MD5 | 35 - NAMESPACE | 14 R/bixplot.R |only R/predsplot.R | 91 ++ build/partial.rdb |binary build/vignette.rds |binary data/data_latenc.rdata |only inst/doc/Discriminant_analysis_examples.html | 651 ++++++++++---------- inst/doc/K_nearest_neighbors_examples.html | 221 +++--- inst/doc/Neural_net_examples.html | 67 +- inst/doc/Random_forest_examples.html | 340 +++++----- inst/doc/Rpart_examples.html | 31 inst/doc/Support_vector_machine_examples.html | 835 ++++++++++++-------------- inst/doc/bixplot_examples.R |only inst/doc/bixplot_examples.Rmd |only inst/doc/bixplot_examples.html |only inst/doc/predsplot_examples.html | 53 - man/bixplot.Rd |only man/data_latenc.Rd |only man/pamc1d.Rd |only man/predsplot.Rd | 41 - vignettes/bixplot_examples.Rmd |only 23 files changed, 1234 insertions(+), 1171 deletions(-)
Title: Spatial Prediction Tools
Description: Methods for spatial predictive modeling, especially for spatial distribution models. This includes algorithms for model fitting and prediction, as well as methods for model evaluation.
Author: Robert J. Hijmans [cre, aut] ,
Steven Phillips [ctb],
Marcia Barbosa [ctb],
Chris Brunsdon [ctb],
Barry Rowlingson [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between predicts versions 0.1-19 dated 2025-05-06 and 0.2-2 dated 2026-04-29
predicts-0.1-19/predicts/ChangeLog |only predicts-0.1-19/predicts/man/divpol.Rd |only predicts-0.2-2/predicts/DESCRIPTION | 8 predicts-0.2-2/predicts/MD5 | 35 predicts-0.2-2/predicts/NEWS.md |only predicts-0.2-2/predicts/R/divpol.R | 4 predicts-0.2-2/predicts/R/envelope.R | 446 +++---- predicts-0.2-2/predicts/R/maxent.R | 1119 ++++++++++---------- predicts-0.2-2/predicts/build/partial.rdb |binary predicts-0.2-2/predicts/inst/ex/biome.tif |binary predicts-0.2-2/predicts/inst/ex/biome.tif.aux.xml | 1 predicts-0.2-2/predicts/inst/java/maxent.jar |binary predicts-0.2-2/predicts/inst/java/maxent_readme.txt | 610 +++++----- predicts-0.2-2/predicts/man/envelope.Rd | 166 +- predicts-0.2-2/predicts/man/maxent.Rd | 13 predicts-0.2-2/predicts/man/mess.Rd | 146 +- predicts-0.2-2/predicts/man/plot.Rd | 74 - predicts-0.2-2/predicts/man/pycnophy.Rd | 110 - predicts-0.2-2/predicts/man/response.Rd | 100 - predicts-0.2-2/predicts/man/varImportance.Rd | 78 - 20 files changed, 1489 insertions(+), 1421 deletions(-)
Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions.
Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc.
Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM)
for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates).
A group of functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc.
Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of larg [...truncated...]
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrMisc versions 2.0.0 dated 2026-03-09 and 2.0.2 dated 2026-04-29
DESCRIPTION | 6 MD5 | 61 +++--- NAMESPACE | 4 R/convPairwiseSetup.R |only R/findHeadAndTail.R |only R/getPWseparator.R |only R/getPairwiseSetup.R |only R/gitDataUrl.R | 39 ++- R/indexGroupsFromPW.R | 200 +++----------------- R/matchMatrixLinesToRef.R | 41 +++- R/matchSampToPairw.R | 2 R/moderTest2grp.R | 12 - R/moderTestXgrp.R | 190 ++++++++----------- R/presenceFilt.R | 20 +- R/pwSeparatorList.R |only R/rmSharedWords.R | 2 R/sampNoDeMArrayLM.R | 117 +++++++++-- build/vignette.rds |binary inst/doc/wrMiscVignette1.R | 64 ++++++ inst/doc/wrMiscVignette1.Rmd | 115 +++++++++++ inst/doc/wrMiscVignette1.html | 419 ++++++++++++++++++++++++++++++++++-------- man/convPairwiseSetup.Rd |only man/dot-getPWseparator.Rd | 7 man/findHeadAndTail.Rd |only man/getPWseparator.Rd | 19 + man/getPairwiseSetup.Rd |only man/gitDataUrl.Rd | 23 +- man/indexGroupsFromPW.Rd | 8 man/matchSampToPairw.Rd | 2 man/moderTest2grp.Rd | 4 man/moderTestXgrp.Rd | 38 ++- man/presenceFilt.Rd | 4 man/pwSeparatorList.Rd |only man/replacePWseparator.Rd | 2 man/sampNoDeMArrayLM.Rd | 32 ++- vignettes/wrMiscVignette1.Rmd | 115 +++++++++++ 36 files changed, 1046 insertions(+), 500 deletions(-)
Title: Compute Least Squares Estimates of One Bounded or Two Ordered
Isotonic Regression Curves
Description: We consider the problem of estimating two isotonic regression curves g1* and g2* under the constraint that they are ordered, i.e. g1* <= g2*. Given two sets of n data points y_1, ..., y_n and z_1, ..., z_n that are observed at (the same) deterministic design points x_1, ..., x_n, the estimates are obtained by minimizing the Least Squares criterion L(a, b) = sum_{i=1}^n (y_i - a_i)^2 w1(x_i) + sum_{i=1}^n (z_i - b_i)^2 w2(x_i) over the class of pairs of vectors (a, b) such that a and b are isotonic and a_i <= b_i for all i = 1, ..., n. We offer two different approaches to compute the estimates: a projected subgradient algorithm where the projection is calculated using a PAVA as well as Dykstra's cyclical projection algorithm.
Author: Fadoua Balabdaoui [aut],
Kaspar Rufibach [aut, cre],
Filippo Santambrogio [aut]
Maintainer: Kaspar Rufibach <kaspar.rufibach@gmail.com>
Diff between OrdMonReg versions 1.0.3 dated 2011-12-01 and 1.0.4 dated 2026-04-29
DESCRIPTION | 28 ++++++++++++++++++---------- MD5 | 24 ++++++++++++------------ NEWS | 4 ++++ data/mechIng.rda |binary man/BoundedAntiMeanTwo.Rd | 15 ++++++++------- man/BoundedIsoMean.Rd | 8 ++++---- man/BoundedIsoMeanTwoDykstra.Rd | 8 ++++---- man/LSfunctional.Rd | 8 ++++---- man/MA.Rd | 8 ++++---- man/Subgradient.Rd | 8 ++++---- man/bstar_n.Rd | 8 ++++---- man/minK.Rd | 10 +++++----- man/ordMonReg-package.Rd | 14 +++++++------- 13 files changed, 78 insertions(+), 65 deletions(-)
Title: 'MADGRAD' Method for Stochastic Optimization
Description: A Momentumized, Adaptive, Dual Averaged Gradient Method for Stochastic
Optimization algorithm. MADGRAD is a 'best-of-both-worlds' optimizer with the
generalization performance of stochastic gradient descent and at least as fast
convergence as that of Adam, often faster. A drop-in optim_madgrad() implementation
is provided based on Defazio et al (2020) <doi:10.48550/arXiv.2101.11075>.
Author: Daniel Falbel [aut, cre, cph],
Posit Software, PBC [cph],
MADGRAD original implementation authors. [cph]
Maintainer: Daniel Falbel <dfalbel@gmail.com>
Diff between madgrad versions 0.1.0 dated 2021-05-10 and 0.2.0 dated 2026-04-29
DESCRIPTION | 18 +++++++++--------- MD5 | 9 +++++---- NAMESPACE | 4 ++++ NEWS.md |only R/madgrad.R | 2 ++ README.md | 11 +++++++++-- 6 files changed, 29 insertions(+), 15 deletions(-)
Title: Graph/Network Analysis Based on L1 Centrality
Description: Analyze graph/network data using L1 centrality and prestige. Functions for deriving global, local, and group L1 centrality/prestige are provided. Routines for visual inspection of a graph/network are also provided. Details are in Kang and Oh (2026a) <doi:10.1080/01621459.2025.2520467>, Kang and Oh (2026b) <doi:10.1080/00031305.2025.2563730>, and Kang (2025) <doi:10.23170/snu.000000188358.11032.0001856>.
Author: Seungwoo Kang [aut, cre] ,
Hee-Seok Oh [aut]
Maintainer: Seungwoo Kang <kangsw@skku.edu>
Diff between L1centrality versions 0.4.0 dated 2025-10-27 and 0.5.0 dated 2026-04-29
DESCRIPTION | 17 ++- MD5 | 52 +++++------ NAMESPACE | 1 NEWS.md | 24 +++++ R/L1cent.R | 50 ++++++----- R/L1centEDGE.R | 32 ++++--- R/L1centGROUP.R | 191 +++++++++++++++++++++++++++----------------- R/L1centLOC.R | 97 ++++++++++++++++------ R/L1centMDS.R | 70 +++++++++++----- R/L1centNB.R | 31 ++++--- R/L1centrality-package.R | 7 - R/Lorenz_plot.R | 6 - R/MCUmovie.R | 2 R/rokassembly21.R | 2 R/validate.R | 7 - inst/CITATION | 12 +- man/Heterogeneity.Rd | 6 - man/L1cent.Rd | 47 +++++----- man/L1centEDGE.Rd | 27 +++--- man/L1centGROUP.Rd | 42 +++++---- man/L1centLOC.Rd | 45 ++++++---- man/L1centMDS.Rd | 46 ++++++---- man/L1centNB.Rd | 40 +++++---- man/L1centrality-package.Rd | 8 - man/MCUmovie.Rd | 2 man/group_reduce.Rd | 33 ++++--- man/rokassembly21.Rd | 2 27 files changed, 567 insertions(+), 332 deletions(-)
Title: A Performance-Focused Package for Clinical Trial Tables
Description: Create high-performance clinical reporting tables (TLGs) from
ADaM-like inputs. The package provides a consistent, programmatic API
to generate common tables such as demographics, adverse event incidence,
and laboratory summaries, using 'data.table' for fast aggregation over
large populations. Functions support flexible target-variable selection,
stratification by treatment, and customizable summary statistics, and
return tidy, machine-readable results ready to render with downstream
table/formatting packages in analysis pipelines.
Author: Max Ebenezer-Brown [aut],
Max Norman [aut],
Xinye Li [aut],
Anja Peebles-Brown [aut],
Ashley Baldry [aut],
Ramiro Magno [aut, cre]
Maintainer: Ramiro Magno <ramiro.morgado@acuityanalytics.com>
Diff between dtlg versions 0.0.3 dated 2026-01-12 and 0.1.0 dated 2026-04-29
dtlg-0.0.3/dtlg/tests/testthat/test-calc-stats.R |only dtlg-0.1.0/dtlg/DESCRIPTION | 58 +++---- dtlg-0.1.0/dtlg/LICENSE | 2 dtlg-0.1.0/dtlg/MD5 | 70 ++++----- dtlg-0.1.0/dtlg/NEWS.md | 40 +++++ dtlg-0.1.0/dtlg/R/AET01_table.R | 6 dtlg-0.1.0/dtlg/R/AET02_table.R | 1 dtlg-0.1.0/dtlg/R/calc-stats.R | 141 +++++++++++++++---- dtlg-0.1.0/dtlg/R/data-table-utils.R | 16 -- dtlg-0.1.0/dtlg/R/dt-copy-semantics.R | 2 dtlg-0.1.0/dtlg/R/dt-helpers.R | 3 dtlg-0.1.0/dtlg/R/events.R | 24 +-- dtlg-0.1.0/dtlg/R/level-set.R | 2 dtlg-0.1.0/dtlg/R/merge-table-lists.R | 1 dtlg-0.1.0/dtlg/R/near.R | 2 dtlg-0.1.0/dtlg/R/package-availability.R | 5 dtlg-0.1.0/dtlg/R/round.R | 2 dtlg-0.1.0/dtlg/R/summary-table.R | 129 +++++++++++------ dtlg-0.1.0/dtlg/R/tern.R | 6 dtlg-0.1.0/dtlg/README.md | 6 dtlg-0.1.0/dtlg/man/calc_desc.Rd | 14 + dtlg-0.1.0/dtlg/man/calc_stats.Rd | 11 - dtlg-0.1.0/dtlg/man/dtlg-package.Rd | 13 - dtlg-0.1.0/dtlg/man/print_dtlg.Rd | 2 dtlg-0.1.0/dtlg/man/summary_table.Rd | 11 + dtlg-0.1.0/dtlg/man/summary_table_by.Rd | 13 + dtlg-0.1.0/dtlg/man/summary_table_by_targets.Rd | 25 ++- dtlg-0.1.0/dtlg/man/total_events.Rd | 4 dtlg-0.1.0/dtlg/tests/testthat/test-AET01_table.R |only dtlg-0.1.0/dtlg/tests/testthat/test-calc-desc.R | 16 +- dtlg-0.1.0/dtlg/tests/testthat/test-dt-count.R | 14 - dtlg-0.1.0/dtlg/tests/testthat/test-dt-expand-grid.R | 10 - dtlg-0.1.0/dtlg/tests/testthat/test-dt-relevel_col.R | 128 ++++++++--------- dtlg-0.1.0/dtlg/tests/testthat/test-formatters.R | 1 dtlg-0.1.0/dtlg/tests/testthat/test-level-set.R | 6 dtlg-0.1.0/dtlg/tests/testthat/test-round.R |only dtlg-0.1.0/dtlg/tests/testthat/test-summary-table.R | 123 +++++++++++----- dtlg-0.1.0/dtlg/tests/testthat/test-tern.R |only 38 files changed, 586 insertions(+), 321 deletions(-)
Title: Download Spanish Election Results
Description: Download official election results for Spain at polling station,
municipality and province level, format them and import them to the R
environment. Data are provided by the Spanish Ministry of the Interior
(<https://infoelectoral.interior.gob.es/es/inicio/>).
Author: Hector Meleiro [aut, cre]
Maintainer: Hector Meleiro <hmeleiros@gmail.com>
This is a re-admission after prior archival of version 1.0.2 dated 2024-05-30
Diff between infoelectoral versions 1.0.2 dated 2024-05-30 and 1.0.3 dated 2026-04-29
DESCRIPTION | 18 +- MD5 | 74 ++++++------ NAMESPACE | 2 R/candidatos_nosenado.R | 4 R/data.R | 6 R/download_bin.R | 9 + R/election_type_code.R | 4 R/examples/candidatos.R | 8 - R/examples/mesas.R | 8 - R/examples/municipios.R | 6 R/examples/provincias.R | 6 R/globals.R |only R/mesas.R | 14 +- R/provincias.R | 9 - R/senado_mesas.R | 14 +- R/senado_municipios.R | 8 - README.md | 12 - build/vignette.rds |binary inst/doc/infoelectoral.R | 22 +-- inst/doc/infoelectoral.Rmd | 6 inst/doc/infoelectoral.html | 151 +----------------------- inst/doc/municipios.R | 152 ++++++++++++------------- inst/doc/municipios.Rmd | 8 - inst/doc/municipios.html | 25 ---- man/candidatos.Rd | 8 - man/codigos_ccaa.Rd | 2 man/codigos_municipios.Rd | 2 man/mesas.Rd | 8 - man/municipios.Rd | 6 man/provincias.Rd | 6 man/renta.Rd | 2 tests/testthat/helper-skip.R |only tests/testthat/test-all-elections-provincias.R | 1 tests/testthat/test-candidatos.R | 21 +-- tests/testthat/test-mesas.R | 23 +-- tests/testthat/test-municipios.R | 24 +-- tests/testthat/test-provincias.R | 27 ++-- vignettes/infoelectoral.Rmd | 6 vignettes/municipios.Rmd | 8 - 39 files changed, 293 insertions(+), 417 deletions(-)
Title: Discrete Time Survival Analysis
Description: Provides data transformations, estimation utilities,
predictive evaluation measures and simulation functions for discrete time
survival analysis.
Author: Thomas Welchowski [aut, cre],
Moritz Berger [aut],
David Koehler [aut],
Matthias Schmid [aut]
Maintainer: Thomas Welchowski <t.welchowski@psychologie.uzh.ch>
Diff between discSurv versions 2.0.0 dated 2022-03-02 and 2.5.1 dated 2026-04-29
discSurv-2.0.0/discSurv/R/SurvTreeLaplaceHazards_ranger.R |only discSurv-2.0.0/discSurv/man/calibrationPlot.Rd |only discSurv-2.0.0/discSurv/man/compRisksGEE.Rd |only discSurv-2.0.0/discSurv/man/estCumInz.Rd |only discSurv-2.0.0/discSurv/man/intPredErrCompRisks.Rd |only discSurv-2.0.0/discSurv/man/plotCumInc.Rd |only discSurv-2.0.0/discSurv/man/plotSurv.Rd |only discSurv-2.0.0/discSurv/man/predErrCompRisks.Rd |only discSurv-2.0.0/discSurv/man/survTreeLaplaceHazardRanger.Rd |only discSurv-2.5.1/discSurv/DESCRIPTION | 27 discSurv-2.5.1/discSurv/MD5 | 131 - discSurv-2.5.1/discSurv/NAMESPACE | 53 discSurv-2.5.1/discSurv/R/DiscSurvAuxiliary.R | 57 discSurv-2.5.1/discSurv/R/DiscSurvDataTransform.R | 280 +- discSurv-2.5.1/discSurv/R/DiscSurvEstimation.R | 946 ++++--- discSurv-2.5.1/discSurv/R/DiscSurvEstimationCR.R | 1141 +++++++++ discSurv-2.5.1/discSurv/R/DiscSurvEvaluation.R | 1211 ++++------ discSurv-2.5.1/discSurv/R/DiscSurvEvaluationCR.R | 201 + discSurv-2.5.1/discSurv/R/DiscSurvLifeTable.R | 53 discSurv-2.5.1/discSurv/R/DiscSurvPlot.R | 578 ++++ discSurv-2.5.1/discSurv/R/dataSets.R | 20 discSurv-2.5.1/discSurv/R/discSurv-package.R | 66 discSurv-2.5.1/discSurv/R/minNodeSizePruning.R | 100 discSurv-2.5.1/discSurv/R/minNodeSizePruningCompRisks.R | 111 discSurv-2.5.1/discSurv/R/survTreeLaplaceHazards.R | 150 - discSurv-2.5.1/discSurv/build/partial.rdb |binary discSurv-2.5.1/discSurv/inst/REFERENCES.bib | 149 + discSurv-2.5.1/discSurv/man/adjDevResid.Rd | 29 discSurv-2.5.1/discSurv/man/cIndex.Rd | 140 - discSurv-2.5.1/discSurv/man/cIndexCompRisks.Rd | 12 discSurv-2.5.1/discSurv/man/calPlot.Rd |only discSurv-2.5.1/discSurv/man/contToDisc.Rd | 24 discSurv-2.5.1/discSurv/man/covarGEE.Rd | 20 discSurv-2.5.1/discSurv/man/crash2.Rd | 16 discSurv-2.5.1/discSurv/man/dataCensoring.Rd | 36 discSurv-2.5.1/discSurv/man/dataLong.Rd | 38 discSurv-2.5.1/discSurv/man/dataLongCompRisks.Rd | 43 discSurv-2.5.1/discSurv/man/dataLongCompRisksTimeDep.Rd | 29 discSurv-2.5.1/discSurv/man/dataLongMultiSpell.Rd | 30 discSurv-2.5.1/discSurv/man/dataLongSubDist.Rd | 29 discSurv-2.5.1/discSurv/man/dataLongTimeDep.Rd | 27 discSurv-2.5.1/discSurv/man/devResid.Rd | 12 discSurv-2.5.1/discSurv/man/discSurv-package.Rd | 49 discSurv-2.5.1/discSurv/man/estCompRisksGEE.Rd |only discSurv-2.5.1/discSurv/man/estCumHaz.Rd |only discSurv-2.5.1/discSurv/man/estCumHazCompRisks.Rd |only discSurv-2.5.1/discSurv/man/estCumInc.Rd |only discSurv-2.5.1/discSurv/man/estForest.Rd |only discSurv-2.5.1/discSurv/man/estForestCompRisks.Rd |only discSurv-2.5.1/discSurv/man/estMargProb.Rd | 24 discSurv-2.5.1/discSurv/man/estMargProbCompRisks.Rd | 19 discSurv-2.5.1/discSurv/man/estMeasures.Rd |only discSurv-2.5.1/discSurv/man/estMeasuresCompRisks.Rd |only discSurv-2.5.1/discSurv/man/estRecal.Rd | 49 discSurv-2.5.1/discSurv/man/estReg.Rd |only discSurv-2.5.1/discSurv/man/estRegCompRisks.Rd |only discSurv-2.5.1/discSurv/man/estRegFrailty.Rd |only discSurv-2.5.1/discSurv/man/estRegSmooth.Rd |only discSurv-2.5.1/discSurv/man/estRegSmoothCompRisks.Rd |only discSurv-2.5.1/discSurv/man/estRegSubDist.Rd |only discSurv-2.5.1/discSurv/man/estSurv.Rd | 53 discSurv-2.5.1/discSurv/man/estSurvCens.Rd | 22 discSurv-2.5.1/discSurv/man/estSurvCompRisks.Rd | 26 discSurv-2.5.1/discSurv/man/estTree.Rd |only discSurv-2.5.1/discSurv/man/estTreeCompRisks.Rd |only discSurv-2.5.1/discSurv/man/gumbel.Rd | 2 discSurv-2.5.1/discSurv/man/intPredErr.Rd | 36 discSurv-2.5.1/discSurv/man/intpredErrCurveCompRisks.Rd |only discSurv-2.5.1/discSurv/man/lifeTable.Rd | 42 discSurv-2.5.1/discSurv/man/martingaleResid.Rd | 27 discSurv-2.5.1/discSurv/man/minNodePruning.Rd | 199 - discSurv-2.5.1/discSurv/man/minNodePruningCompRisks.Rd | 75 discSurv-2.5.1/discSurv/man/predErrCurve.Rd | 80 discSurv-2.5.1/discSurv/man/predErrCurveCompRisks.Rd |only discSurv-2.5.1/discSurv/man/survTreeLaplaceHazard.Rd | 60 discSurv-2.5.1/discSurv/man/unempMultiSpell.Rd | 4 discSurv-2.5.1/discSurv/man/weightsLtoT.Rd | 32 discSurv-2.5.1/discSurv/tests/UnitTestsDiscSurvDataTransform.R | 676 ++--- discSurv-2.5.1/discSurv/tests/UnitTestsDiscSurvEstimation.R | 118 discSurv-2.5.1/discSurv/tests/UnitTestsDiscSurvLifeTable.R | 184 - discSurv-2.5.1/discSurv/tests/UnitTestsPlots.R |only 81 files changed, 5009 insertions(+), 2527 deletions(-)
Title: Gradient Projection Factor Rotation
Description: Gradient projection algorithms for orthogonal and oblique rotation
of factor loadings matrices in factor analysis. Implements a comprehensive
set of rotation criteria including quartimax, quartimin, oblimin, geomin,
simplimax, the Crawford-Ferguson family, and target rotation, among others.
Supports multiple random starts. For details see Bernaards and Jennrich (2005)
<doi:10.1177/0013164404272507>.
Author: Coen Bernaards [aut, cre],
Paul Gilbert [aut],
Robert Jennrich [aut]
Maintainer: Coen Bernaards <cab.gparotation@gmail.com>
Diff between GPArotation versions 2025.3-1 dated 2025-04-12 and 2026.4-1 dated 2026-04-29
GPArotation-2025.3-1/GPArotation/inst/doc/GPAguide.R |only GPArotation-2025.3-1/GPArotation/inst/doc/GPAguide.Stex |only GPArotation-2025.3-1/GPArotation/inst/doc/GPAguide.pdf |only GPArotation-2025.3-1/GPArotation/inst/doc/GPArotateDF.R |only GPArotation-2025.3-1/GPArotation/inst/doc/GPArotateDF.Stex |only GPArotation-2025.3-1/GPArotation/inst/doc/GPArotateDF.pdf |only GPArotation-2025.3-1/GPArotation/vignettes/GPAguide.Stex |only GPArotation-2025.3-1/GPArotation/vignettes/GPArotateDF.Stex |only GPArotation-2026.4-1/GPArotation/DESCRIPTION | 35 GPArotation-2026.4-1/GPArotation/MD5 | 82 GPArotation-2026.4-1/GPArotation/NAMESPACE | 89 GPArotation-2026.4-1/GPArotation/NEWS | 247 + GPArotation-2026.4-1/GPArotation/R/GPF.R | 256 + GPArotation-2026.4-1/GPArotation/R/GPFRS.R | 175 - GPArotation-2026.4-1/GPArotation/R/NormalizingWeight.R | 35 GPArotation-2026.4-1/GPArotation/R/RandomStart.R | 47 GPArotation-2026.4-1/GPArotation/R/lp.R | 403 +-- GPArotation-2026.4-1/GPArotation/R/printsummary.R | 258 + GPArotation-2026.4-1/GPArotation/R/rotations.R | 1449 ++++++----- GPArotation-2026.4-1/GPArotation/build/vignette.rds |binary GPArotation-2026.4-1/GPArotation/data/CCAI.rda |only GPArotation-2026.4-1/GPArotation/data/Harman.rda |binary GPArotation-2026.4-1/GPArotation/data/WansbeekMeijer.rda |binary GPArotation-2026.4-1/GPArotation/inst/doc/GPA1guide.R |only GPArotation-2026.4-1/GPArotation/inst/doc/GPA1guide.Stex |only GPArotation-2026.4-1/GPArotation/inst/doc/GPA1guide.pdf |only GPArotation-2026.4-1/GPArotation/inst/doc/GPA2local.R |only GPArotation-2026.4-1/GPArotation/inst/doc/GPA2local.Stex |only GPArotation-2026.4-1/GPArotation/inst/doc/GPA2local.pdf |only GPArotation-2026.4-1/GPArotation/inst/doc/GPA3bifactor.R |only GPArotation-2026.4-1/GPArotation/inst/doc/GPA3bifactor.Stex |only GPArotation-2026.4-1/GPArotation/inst/doc/GPA3bifactor.pdf |only GPArotation-2026.4-1/GPArotation/man/00.GPArotation.Rd | 253 + GPArotation-2026.4-1/GPArotation/man/CCAI.Rd |only GPArotation-2026.4-1/GPArotation/man/GPA.Rd | 461 ++- GPArotation-2026.4-1/GPArotation/man/Harman.Rd | 55 GPArotation-2026.4-1/GPArotation/man/NormalizingWeight.Rd | 76 GPArotation-2026.4-1/GPArotation/man/Random.Start.Rd | 125 GPArotation-2026.4-1/GPArotation/man/Thurstone.Rd | 54 GPArotation-2026.4-1/GPArotation/man/WansbeekMeijer.Rd | 55 GPArotation-2026.4-1/GPArotation/man/echelon.Rd | 160 - GPArotation-2026.4-1/GPArotation/man/eiv.Rd | 159 - GPArotation-2026.4-1/GPArotation/man/lp.Rd | 156 - GPArotation-2026.4-1/GPArotation/man/print.GPArotation.Rd | 108 GPArotation-2026.4-1/GPArotation/man/rotations.Rd | 402 +-- GPArotation-2026.4-1/GPArotation/man/vgQ.Rd | 153 - GPArotation-2026.4-1/GPArotation/tests/errormessages.R | 103 GPArotation-2026.4-1/GPArotation/tests/legacyVsNew.R |only GPArotation-2026.4-1/GPArotation/tests/print-GPArotation.R | 156 - GPArotation-2026.4-1/GPArotation/tests/tableTests.r |only GPArotation-2026.4-1/GPArotation/tests/vgQOLD.R |only GPArotation-2026.4-1/GPArotation/tests/vgQtestOldVsNew.R |only GPArotation-2026.4-1/GPArotation/vignettes/GPA1guide.Stex |only GPArotation-2026.4-1/GPArotation/vignettes/GPA2local.Stex |only GPArotation-2026.4-1/GPArotation/vignettes/GPA3bifactor.Stex |only 55 files changed, 3335 insertions(+), 2217 deletions(-)
Title: Publication-Quality 'ggplot2' Themes
Description: Complete themes for publication-quality 'ggplot2' visualisation.
Also provides functions to modify these based on the positional axis scales
and focus of a particular plot.
Author: David Hodge [aut, cre, cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggrefine versions 0.2.0 dated 2026-04-14 and 0.3.0 dated 2026-04-29
ggrefine-0.2.0/ggrefine/R/refine.R |only ggrefine-0.2.0/ggrefine/R/theme.R |only ggrefine-0.2.0/ggrefine/R/utils.R |only ggrefine-0.2.0/ggrefine/man/refine_classic.Rd |only ggrefine-0.2.0/ggrefine/man/refine_fusion.Rd |only ggrefine-0.2.0/ggrefine/man/refine_modern.Rd |only ggrefine-0.2.0/ggrefine/man/refine_none.Rd |only ggrefine-0.2.0/ggrefine/man/refine_void.Rd |only ggrefine-0.3.0/ggrefine/DESCRIPTION | 17 +- ggrefine-0.3.0/ggrefine/MD5 | 49 +++++--- ggrefine-0.3.0/ggrefine/NAMESPACE | 12 +- ggrefine-0.3.0/ggrefine/NEWS.md | 8 + ggrefine-0.3.0/ggrefine/R/classic.R |only ggrefine-0.3.0/ggrefine/R/hybrid.R |only ggrefine-0.3.0/ggrefine/R/minimal.R |only ggrefine-0.3.0/ggrefine/R/modern.R |only ggrefine-0.3.0/ggrefine/R/none.R |only ggrefine-0.3.0/ggrefine/R/theme-dark.R |only ggrefine-0.3.0/ggrefine/R/theme-grey.R |only ggrefine-0.3.0/ggrefine/R/theme-light.R |only ggrefine-0.3.0/ggrefine/R/theme-oat.R |only ggrefine-0.3.0/ggrefine/R/void.R |only ggrefine-0.3.0/ggrefine/README.md | 60 +++++----- ggrefine-0.3.0/ggrefine/inst |only ggrefine-0.3.0/ggrefine/man/classic.Rd |only ggrefine-0.3.0/ggrefine/man/figures/README-example-1.png |binary ggrefine-0.3.0/ggrefine/man/figures/README-unnamed-chunk-2-1.png |binary ggrefine-0.3.0/ggrefine/man/figures/logo.png |binary ggrefine-0.3.0/ggrefine/man/figures/logo.svg | 4 ggrefine-0.3.0/ggrefine/man/hybrid.Rd |only ggrefine-0.3.0/ggrefine/man/minimal.Rd |only ggrefine-0.3.0/ggrefine/man/modern.Rd |only ggrefine-0.3.0/ggrefine/man/none.Rd |only ggrefine-0.3.0/ggrefine/man/theme_dark.Rd | 12 +- ggrefine-0.3.0/ggrefine/man/theme_grey.Rd | 21 ++- ggrefine-0.3.0/ggrefine/man/theme_light.Rd | 12 +- ggrefine-0.3.0/ggrefine/man/theme_oat.Rd |only ggrefine-0.3.0/ggrefine/man/void.Rd |only ggrefine-0.3.0/ggrefine/tests |only 39 files changed, 111 insertions(+), 84 deletions(-)
Title: Entropy Reweighting to Create Balanced Samples
Description: Implements entropy balancing, a data preprocessing procedure
described in Hainmueller (2012, <doi:10.1093/pan/mpr025>) that allows
users to reweight a dataset such that the covariate distributions in
the reweighted data satisfy a set of user-specified moment conditions.
Useful for creating balanced samples in observational studies with a
binary treatment where the control group is reweighted to match the
covariate moments of the treatment group, and for reweighting a
survey sample to known characteristics from a target population.
Author: Jens Hainmueller [aut, cre]
Maintainer: Jens Hainmueller <jhain@stanford.edu>
Diff between ebal versions 0.1-8 dated 2022-06-09 and 0.2.1 dated 2026-04-29
DESCRIPTION | 31 ++++-- MD5 | 32 ++++-- NAMESPACE | 35 +++++- NEWS.md |only R/eb.R | 4 R/ebalance.R | 247 +++++++++++++++++++++++++++--------------------- R/ebalance.trim.r | 128 ++++++++++++++++-------- R/getsquares.R | 24 ++-- R/line.searcher.r | 25 ++-- R/matrixmaker.R | 29 ++--- R/methods.R |only R/utils.R |only R/zzz.r | 14 -- man/ebalance-methods.Rd |only man/ebalance.Rd | 167 +++++++++++++++++++++----------- man/ebalance.trim.Rd | 88 ++++++++++------- tests |only 17 files changed, 505 insertions(+), 319 deletions(-)
Title: 'DataSHIELD' 'Tidyverse' Clientside Package
Description: Implementation of selected 'Tidyverse' functions within 'DataSHIELD', an open-source federated analysis solution in R. Currently, 'DataSHIELD' contains very limited tools for data manipulation, so the aim of this package is to improve the researcher experience by implementing essential functions for data manipulation, including subsetting, filtering, grouping, and renaming variables. This is the client-side package which should be installed locally, and is used in conjunction with the server-side package 'dsTidyverse' which is installed on the remote server holding the data. For more information, see <https://tidyverse.org/> and <https://datashield.org/>.
Author: Tim Cadman [aut, cre] ,
Mariska Slofstra [aut] ,
Stuart Wheater [aut],
Demetris Avraam [aut]
Maintainer: Tim Cadman <t.j.cadman@umcg.nl>
Diff between dsTidyverseClient versions 1.0.3 dated 2025-12-15 and 1.1.0 dated 2026-04-29
DESCRIPTION | 11 MD5 | 60 ++--- NEWS.md | 3 R/ds.arrange.R | 4 R/ds.distinct.R | 4 R/ds.filter.R | 4 R/ds.group_by.R | 6 R/ds.group_keys.R | 4 R/ds.mutate.R | 2 R/ds.rename.R | 4 R/ds.select.R | 4 R/ds.slice.R | 4 R/utils.R | 6 inst/doc/dstidyverse.Rmd | 105 ++++---- inst/doc/dstidyverse.html | 276 +++++++++++------------ man/ds.arrange.Rd | 4 man/ds.distinct.Rd | 4 man/ds.filter.Rd | 4 man/ds.group_by.Rd | 4 man/ds.group_keys.Rd | 4 man/ds.mutate.Rd | 2 man/ds.rename.Rd | 4 man/ds.select.Rd | 4 man/ds.slice.Rd | 4 man/ds.ungroup.Rd | 2 tests/testthat/helpers.R | 15 + tests/testthat/test-mutate-permitted-functions.R |only tests/testthat/test-select-permitted-functions.R |only tests/testthat/test-select.R | 135 ----------- tests/testthat/test-utils.R | 6 vignettes/dstidyverse.Rmd | 105 ++++---- vignettes/dstidyverse.Rmd.orig | 2 32 files changed, 338 insertions(+), 458 deletions(-)
More information about dsTidyverseClient at CRAN
Permanent link
Title: Ready to Use Extra Datasets for Torch
Description: Provides datasets in a format that can be easily consumed by torch 'dataloaders'.
Handles data downloading from multiple sources, caching and pre-processing so
users can focus only on their model implementations.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [aut, cph],
RStudio [cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between torchdatasets versions 0.3.1 dated 2024-06-20 and 0.3.2 dated 2026-04-29
DESCRIPTION | 20 +++++++++----------- MD5 | 17 ++++++++++------- NAMESPACE | 1 + NEWS.md | 2 ++ R/bird-species.R | 1 - R/spam-dataset.R |only README.md | 1 + man/bird_species_dataset.Rd | 1 - man/spam_dataset.Rd |only tests/testthat/test-oxford-flowers-dataset.R | 1 + tests/testthat/test-spam-dataset.R |only 11 files changed, 24 insertions(+), 20 deletions(-)
Title: Tools for Handling Extraction of Features from Time Series
Description: Consolidates and calculates different sets of time-series features from multiple
'R' and 'Python' packages including 'Rcatch22' Henderson, T. (2021) <doi:10.5281/zenodo.5546815>,
'feasts' O'Hara-Wild, M., Hyndman, R., and Wang, E. (2021) <https://CRAN.R-project.org/package=feasts>,
'tsfeatures' Hyndman, R., Kang, Y., Montero-Manso, P., Talagala, T., Wang, E., Yang, Y., and O'Hara-Wild, M. (2020)
<https://CRAN.R-project.org/package=tsfeatures>, 'tsfresh' Christ, M., Braun, N., Neuffer, J.,
and Kempa-Liehr A.W. (2018) <doi:10.1016/j.neucom.2018.03.067>, 'TSFEL' Barandas, M., et al. (2020)
<doi:10.1016/j.softx.2020.100456>, and 'Kats' Facebook Infrastructure Data Science (2021)
<https://facebookresearch.github.io/Kats/>.
Author: Trent Henderson [cre, aut],
Annie Bryant [ctb]
Maintainer: Trent Henderson <then6675@uni.sydney.edu.au>
Diff between theft versions 0.8.2 dated 2025-07-29 and 0.8.4 dated 2026-04-29
DESCRIPTION | 10 +- MD5 | 39 +++++----- NAMESPACE | 5 + R/calculate_features.R | 89 +++++++++++++++++++++-- R/init_theft.R | 87 ++++++++++++++++++++++ R/installs.R | 31 +++++++- R/quantiles.R | 4 - README.md | 74 +++++++++++-------- build/vignette.rds |binary inst/doc/theft.Rmd | 10 +- inst/doc/theft.html | 59 ++++++++------- inst/python/pyhctsa_calculator.py |only inst/yaml |only man/calculate_features.Rd | 2 man/figures/workflow-graphic_ecosystem-final.png |binary man/init_theft.Rd | 4 - man/init_theft_hctsa.Rd |only man/init_theft_kats.Rd |only man/init_theft_tsfel.Rd |only man/init_theft_tsfresh.Rd |only man/install_pyhctsa.Rd |only man/install_python_pkgs.Rd | 4 - man/quantiles.Rd | 4 - vignettes/theft.Rmd | 10 +- 24 files changed, 332 insertions(+), 100 deletions(-)
Title: Synthetic Control Group Method for Comparative Case Studies
Description: Implements the synthetic control group method for comparative case studies
as described in Abadie and Gardeazabal (2003) and Abadie, Diamond, and Hainmueller
(2010, 2011, 2014). The synthetic control method allows for effect estimation in
settings where a single unit (a state, country, firm, etc.) is exposed to an event
or intervention. It provides a data-driven procedure to construct synthetic control
units based on a weighted combination of comparison units that approximates the
characteristics of the unit that is exposed to the intervention. A combination of
comparison units often provides a better comparison for the unit exposed to the
intervention than any comparison unit alone.
Author: Jens Hainmueller [aut, cre],
Alexis Diamond [aut]
Maintainer: Jens Hainmueller <jhain@stanford.edu>
Diff between Synth versions 1.1-9 dated 2025-10-19 and 1.1-10 dated 2026-04-29
DESCRIPTION | 10 ++-- MD5 | 18 +++++--- NEWS.md |only R/dataprep.R | 21 +++++---- R/fn.V.R | 24 ++++------- R/path.plot.R | 48 ++++++++++------------ R/synth.R | 126 +++++++++++++++++++++++++--------------------------------- tests |only 8 files changed, 117 insertions(+), 130 deletions(-)
Title: Deep Neural Networks for Survival Analysis with R 'torch'
Description: Provides deep learning models for right-censored survival data using the 'torch' backend.
Supports multiple loss functions, including Cox partial likelihood, L2-penalized Cox, time-dependent Cox,
and accelerated failure time (AFT) loss. Offers a formula-based interface, built-in support for cross-validation,
hyperparameter tuning, survival curve plotting, and evaluation metrics such as the C-index, Brier score,
and integrated Brier score. For methodological details, see Kvamme et al. (2019) <https://www.jmlr.org/papers/v20/18-424.html>.
Author: Imad EL BADISY [aut, cre]
Maintainer: Imad EL BADISY <elbadisyimad@gmail.com>
Diff between survdnn versions 0.7.5 dated 2026-01-07 and 0.7.6 dated 2026-04-29
DESCRIPTION | 6 - MD5 | 52 ++++++------- NEWS.md | 11 ++ R/evaluation.R | 95 ++++++++++++++++++------- R/gridsearch_survdnn.R | 79 ++++++++++----------- R/metrics.R | 51 +++++++------ R/plot.survdnn.R | 13 +-- R/print.survdnn.R | 11 +- R/summary.survdnn.R | 29 +++++-- R/survdnn.R | 39 +++++++++- R/tune_survdnn.R | 67 ++++++++++++++++- R/zzz.R | 16 ++++ README.md | 139 +++++++++++++++++++++++-------------- man/brier.Rd | 15 ++- man/cindex_survmat.Rd | 15 ++- man/cv_survdnn.Rd | 33 +++++--- man/gridsearch_survdnn.Rd | 68 +++++++++--------- man/ibs_survmat.Rd | 21 ++--- man/plot.survdnn.Rd | 13 +-- man/print.survdnn.Rd | 11 +- man/summarize_cv_survdnn.Rd | 27 +++---- man/summary.survdnn.Rd | 27 ++++--- man/survdnn.Rd | 7 + man/tune_survdnn.Rd | 8 ++ tests/testthat/test-cv_survdnn.R | 45 +++++++++++ tests/testthat/test-survdnn.R | 24 ++++++ tests/testthat/test-tune_survdnn.R | 63 ++++++++++++++++ 27 files changed, 676 insertions(+), 309 deletions(-)
Title: Social Mixing Matrices for Infectious Disease Modelling
Description: Methods for sampling contact matrices from diary data for
use in infectious disease modelling, as discussed in Mossong et al.
(2008) <doi:10.1371/journal.pmed.0050074>.
Author: Sebastian Funk [aut, cre],
Lander Willem [aut],
Hugo Gruson [aut],
Nicholas Tierney [aut] ,
Maria Bekker-Nielsen Dunbar [ctb],
Carl A. B. Pearson [ctb],
Sam Clifford [ctb],
Christopher Jarvis [ctb],
Alexis Robert [ctb],
Niel Hens [ctb],
Pietro Colett [...truncated...]
Maintainer: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
Diff between socialmixr versions 0.5.1 dated 2026-02-04 and 0.6.0 dated 2026-04-29
socialmixr-0.5.1/socialmixr/R/cite.R |only socialmixr-0.5.1/socialmixr/R/download_survey.R |only socialmixr-0.5.1/socialmixr/R/get_survey.R |only socialmixr-0.5.1/socialmixr/tests/testthat/_snaps/countries.md |only socialmixr-0.5.1/socialmixr/tests/testthat/_snaps/download-survey.md |only socialmixr-0.5.1/socialmixr/tests/testthat/_snaps/surveys.md |only socialmixr-0.5.1/socialmixr/tests/testthat/test-download-survey.R |only socialmixr-0.6.0/socialmixr/DESCRIPTION | 14 socialmixr-0.6.0/socialmixr/LICENSE | 2 socialmixr-0.6.0/socialmixr/MD5 | 164 - socialmixr-0.6.0/socialmixr/NAMESPACE | 13 socialmixr-0.6.0/socialmixr/NEWS.md | 121 + socialmixr-0.6.0/socialmixr/R/as_contact_survey.R | 19 socialmixr-0.6.0/socialmixr/R/assign-age-groups.R | 22 socialmixr-0.6.0/socialmixr/R/check.R | 121 - socialmixr-0.6.0/socialmixr/R/checkers.R | 5 socialmixr-0.6.0/socialmixr/R/clean.R | 5 socialmixr-0.6.0/socialmixr/R/compute-matrix.R |only socialmixr-0.6.0/socialmixr/R/contact-age-distribution.R |only socialmixr-0.6.0/socialmixr/R/contact-matrix-result.R |only socialmixr-0.6.0/socialmixr/R/contact-matrix-utils.R | 199 +- socialmixr-0.6.0/socialmixr/R/contact_matrix.R | 307 +-- socialmixr-0.6.0/socialmixr/R/deprecate-args.R | 2 socialmixr-0.6.0/socialmixr/R/deprecated.R |only socialmixr-0.6.0/socialmixr/R/globals.R | 23 socialmixr-0.6.0/socialmixr/R/limits_to_agegroups.R | 24 socialmixr-0.6.0/socialmixr/R/lists.R | 156 - socialmixr-0.6.0/socialmixr/R/load-survey-utils.R | 446 ++-- socialmixr-0.6.0/socialmixr/R/matrix_plot.R | 61 socialmixr-0.6.0/socialmixr/R/new_contact_survey.R | 28 socialmixr-0.6.0/socialmixr/R/pop_age.R | 20 socialmixr-0.6.0/socialmixr/R/postprocess-matrix.R |only socialmixr-0.6.0/socialmixr/R/subset-contact-survey.R |only socialmixr-0.6.0/socialmixr/R/survey.R | 23 socialmixr-0.6.0/socialmixr/R/utils.R | 5 socialmixr-0.6.0/socialmixr/R/weigh.R |only socialmixr-0.6.0/socialmixr/R/wpp_age.R | 41 socialmixr-0.6.0/socialmixr/README.md | 30 socialmixr-0.6.0/socialmixr/build/partial.rdb |binary socialmixr-0.6.0/socialmixr/build/vignette.rds |binary socialmixr-0.6.0/socialmixr/inst/doc/socialmixr.R | 198 +- socialmixr-0.6.0/socialmixr/inst/doc/socialmixr.Rmd | 285 ++- socialmixr-0.6.0/socialmixr/inst/doc/socialmixr.html | 948 +++++----- socialmixr-0.6.0/socialmixr/man/add_age.Rd | 3 socialmixr-0.6.0/socialmixr/man/agegroups_to_limits.Rd |only socialmixr-0.6.0/socialmixr/man/as_contact_survey.Rd | 18 socialmixr-0.6.0/socialmixr/man/assemble_survey.Rd |only socialmixr-0.6.0/socialmixr/man/check.Rd | 31 socialmixr-0.6.0/socialmixr/man/clean.Rd | 5 socialmixr-0.6.0/socialmixr/man/compute_matrix.Rd |only socialmixr-0.6.0/socialmixr/man/contact_age_distribution.Rd |only socialmixr-0.6.0/socialmixr/man/contact_matrix.Rd | 161 + socialmixr-0.6.0/socialmixr/man/copy_survey.Rd |only socialmixr-0.6.0/socialmixr/man/deprecate_arg.Rd | 2 socialmixr-0.6.0/socialmixr/man/dot-get_survey.Rd | 6 socialmixr-0.6.0/socialmixr/man/download_survey.Rd | 5 socialmixr-0.6.0/socialmixr/man/get_citation.Rd | 2 socialmixr-0.6.0/socialmixr/man/get_survey.Rd | 9 socialmixr-0.6.0/socialmixr/man/is_contact_matrix.Rd |only socialmixr-0.6.0/socialmixr/man/is_doi.Rd | 2 socialmixr-0.6.0/socialmixr/man/list_surveys.Rd | 2 socialmixr-0.6.0/socialmixr/man/matrix_plot.Rd | 54 socialmixr-0.6.0/socialmixr/man/new_contact_matrix.Rd |only socialmixr-0.6.0/socialmixr/man/new_contact_survey.Rd | 9 socialmixr-0.6.0/socialmixr/man/normalise_weights.Rd |only socialmixr-0.6.0/socialmixr/man/per_capita.Rd |only socialmixr-0.6.0/socialmixr/man/pop_age.Rd | 19 socialmixr-0.6.0/socialmixr/man/resolve_survey_pop.Rd |only socialmixr-0.6.0/socialmixr/man/sample_from_age_distribution.Rd |only socialmixr-0.6.0/socialmixr/man/split_matrix.Rd |only socialmixr-0.6.0/socialmixr/man/sub-.contact_survey.Rd |only socialmixr-0.6.0/socialmixr/man/survey.Rd | 4 socialmixr-0.6.0/socialmixr/man/survey_countries.Rd | 4 socialmixr-0.6.0/socialmixr/man/symmetrise.Rd |only socialmixr-0.6.0/socialmixr/man/validate_age_distribution.Rd |only socialmixr-0.6.0/socialmixr/man/warn_multiple_observations.Rd |only socialmixr-0.6.0/socialmixr/man/weigh.Rd |only socialmixr-0.6.0/socialmixr/man/wpp_age.Rd | 24 socialmixr-0.6.0/socialmixr/man/wpp_countries.Rd | 15 socialmixr-0.6.0/socialmixr/tests/testthat/_snaps/agegroups.md | 5 socialmixr-0.6.0/socialmixr/tests/testthat/_snaps/as_contact_survey.md | 4 socialmixr-0.6.0/socialmixr/tests/testthat/_snaps/assign-age-groups.md | 38 socialmixr-0.6.0/socialmixr/tests/testthat/_snaps/checks.md | 2 socialmixr-0.6.0/socialmixr/tests/testthat/_snaps/matrix.md | 243 +- socialmixr-0.6.0/socialmixr/tests/testthat/_snaps/survey-country-population.md | 20 socialmixr-0.6.0/socialmixr/tests/testthat/test-agegroups.r | 28 socialmixr-0.6.0/socialmixr/tests/testthat/test-assign-age-groups.R | 117 + socialmixr-0.6.0/socialmixr/tests/testthat/test-compute-matrix.R |only socialmixr-0.6.0/socialmixr/tests/testthat/test-contact-matrix-result.R |only socialmixr-0.6.0/socialmixr/tests/testthat/test-convert-factor-to-integer.R | 2 socialmixr-0.6.0/socialmixr/tests/testthat/test-countries.r | 2 socialmixr-0.6.0/socialmixr/tests/testthat/test-load-survey.R | 27 socialmixr-0.6.0/socialmixr/tests/testthat/test-matrix.r | 89 socialmixr-0.6.0/socialmixr/tests/testthat/test-plot.r | 4 socialmixr-0.6.0/socialmixr/tests/testthat/test-postprocess-matrix.R |only socialmixr-0.6.0/socialmixr/tests/testthat/test-subset-contact-survey.R |only socialmixr-0.6.0/socialmixr/tests/testthat/test-survey-country-population.R | 5 socialmixr-0.6.0/socialmixr/tests/testthat/test-surveys.r | 56 socialmixr-0.6.0/socialmixr/tests/testthat/test-weigh.R |only socialmixr-0.6.0/socialmixr/vignettes/intro.qmd | 303 ++- socialmixr-0.6.0/socialmixr/vignettes/socialmixr.Rmd | 285 ++- 101 files changed, 3158 insertions(+), 1729 deletions(-)
Title: High-Dimensional Location Testing with Normal-Reference
Approaches
Description: Provides inverse-free high-dimensional location tests for two-sample
and general linear hypothesis testing (GLHT) problems under equal or unequal
covariance structures. The package implements classical normal-approximation
procedures, scale-invariant procedures, normal-reference procedures based on
covariance-matched Gaussian companions, and F-type normal-reference
calibrations for heteroscedastic Behrens-Fisher and GLHT settings. Implemented
two-sample normal-approximation and scale-invariant procedures include Bai and
Saranadasa (1996) <https://www.jstor.org/stable/24306018>, Chen and Qin
(2010) <doi:10.1214/09-aos716>, Srivastava and Du (2008)
<doi:10.1016/j.jmva.2006.11.002>, and Srivastava et al. (2013)
<doi:10.1016/j.jmva.2012.08.014>. Implemented two-sample normal-reference
procedures include Zhang, Guo, Zhou and Cheng (2020)
<doi:10.1080/01621459.2019.1604366>, Zhang, Zhou, Guo and Zhu (2021)
<doi:10.1016/j.jspi.2020.11.008>, Zhang, Zhu and Z [...truncated...]
Author: Pengfei Wang [aut, cre],
Shuqi Luo [aut],
Tianming Zhu [aut],
Bu Zhou [aut]
Maintainer: Pengfei Wang <nie23.wp8738@e.ntu.edu.sg>
Diff between HDNRA versions 2.0.1 dated 2024-10-22 and 2.1.0 dated 2026-04-29
DESCRIPTION | 51 + MD5 | 26 NAMESPACE | 4 NEWS.md | 34 + R/CCXH2024.GLHTBF.2cNRT.R |only R/LHNB2025.GLHTBF.NABT.R |only R/RcppExports.R | 12 R/WZ2026.GLHTBF.2cNRT.R |only README.md | 217 +++---- build/partial.rdb |binary inst/REFERENCES.bib | 26 man/CCXH2024.GLHTBF.2cNRT.Rd |only man/HDNRA-package.Rd | 3 man/LHNB2025.GLHTBF.NABT.Rd |only man/WZ2026.GLHTBF.2cNRT.Rd |only src/HDNRA.cpp | 1267 ++++++++++++++++++++++++++++++++++--------- src/RcppExports.cpp | 47 + 17 files changed, 1309 insertions(+), 378 deletions(-)
Title: Efficiently Using Gaussian Processes with Rcpp and RcppEigen
Description: Contains Rcpp and RcppEigen implementations of matrix operations useful for Gaussian process models, such as the inversion of a symmetric Toeplitz matrix, sampling from multivariate normal distributions, evaluation of the log-density of a multivariate normal vector, and Bayesian inference for latent variable Gaussian process models with elliptical slice sampling (Murray, Adams, and MacKay 2010).
Author: Giri Gopalan [aut, cre],
Luke Bornn [aut]
Maintainer: Giri Gopalan <gopalan88@gmail.com>
Diff between FastGP versions 1.2 dated 2016-02-02 and 1.3 dated 2026-04-29
DESCRIPTION | 23 +++++++--- MD5 | 10 ++-- NAMESPACE | 4 - R/RcppExports.R | 20 ++++----- demo/FastGPdemo.R | 35 +++++---------- src/RcppExports.cpp | 115 +++++++++++++++++++++++++++++++--------------------- 6 files changed, 115 insertions(+), 92 deletions(-)
Title: Canonical Correlation Analysis via Reduced Rank Regression
Description: Canonical correlation analysis (CCA) via reduced-rank regression with support for regularization and cross-validation. Several methods for estimating CCA in high-dimensional settings are implemented. The first set of methods, cca_rrr() (and variants: cca_group_rrr() and cca_graph_rrr()), assumes that one dataset is high-dimensional and the other is low-dimensional, while the second, ecca() (for Efficient CCA) assumes that both datasets are high-dimensional. For both methods, standard l1 regularization as well as group-lasso regularization are available. cca_graph_rrr further supports total variation regularization when there is a known graph structure among the variables of the high-dimensional dataset. In this case, the loadings of the canonical directions of the high-dimensional dataset are assumed to be smooth on the graph. For more details see Donnat and Tuzhilina (2024) <doi:10.48550/arXiv.2405.19539> and Wu, Tuzhilina and Donnat (2025) <doi:10.48550/arXiv.2507.11160> [...truncated...]
Author: Claire Donnat [aut, cre] ,
Elena Tuzhilina [aut] ,
Zixuan Wu [aut]
Maintainer: Claire Donnat <cdonnat@uchicago.edu>
This is a re-admission after prior archival of version 0.1.0 dated 2025-09-16
Diff between ccar3 versions 0.1.0 dated 2025-09-16 and 0.1.1 dated 2026-04-29
ccar3-0.1.0/ccar3/man/setup_parallel_backend.Rd |only ccar3-0.1.1/ccar3/DESCRIPTION | 18 ccar3-0.1.1/ccar3/LICENSE | 2 ccar3-0.1.1/ccar3/MD5 | 54 ccar3-0.1.1/ccar3/R/alt_SAR.R | 4 ccar3-0.1.1/ccar3/R/alt_Witten_CrossValidation.R | 14 ccar3-0.1.1/ccar3/R/benchmarks.r | 12 ccar3-0.1.1/ccar3/R/ecca.r | 1809 ++++++---- ccar3-0.1.1/ccar3/R/graph_reduced_rank_regression.R | 760 +++- ccar3-0.1.1/ccar3/R/group_reduced_rank_regression.R | 394 +- ccar3-0.1.1/ccar3/R/package.R |only ccar3-0.1.1/ccar3/R/reduced_rank_regression.R | 966 ++++- ccar3-0.1.1/ccar3/R/utils.R | 342 + ccar3-0.1.1/ccar3/build |only ccar3-0.1.1/ccar3/man/cca_graph_rrr.Rd | 9 ccar3-0.1.1/ccar3/man/cca_graph_rrr_cv.Rd | 19 ccar3-0.1.1/ccar3/man/cca_group_rrr.Rd | 19 ccar3-0.1.1/ccar3/man/cca_group_rrr_cv.Rd | 29 ccar3-0.1.1/ccar3/man/cca_rrr.Rd | 32 ccar3-0.1.1/ccar3/man/cca_rrr_cv.Rd | 69 ccar3-0.1.1/ccar3/man/ccar3-package.Rd |only ccar3-0.1.1/ccar3/man/ecca.Rd | 50 ccar3-0.1.1/ccar3/man/ecca.cv.Rd | 73 ccar3-0.1.1/ccar3/tests/testthat/helper-generate_example_rrr.R | 4 ccar3-0.1.1/ccar3/tests/testthat/test-cca_graph_rrr.R | 26 ccar3-0.1.1/ccar3/tests/testthat/test-cca_graph_rrr_cv.R | 58 ccar3-0.1.1/ccar3/tests/testthat/test-cca_group_rrr.R | 47 ccar3-0.1.1/ccar3/tests/testthat/test-cca_group_rrr_cv.R | 88 ccar3-0.1.1/ccar3/tests/testthat/test-cca_rrr.R | 89 ccar3-0.1.1/ccar3/tests/testthat/test-cca_rrr_cv.R | 35 30 files changed, 3847 insertions(+), 1175 deletions(-)
Title: Backfill Bayesian Optimal Interval Design Using Efficacy and
Toxicity
Description: Implements the Backfill Bayesian Optimal Interval Design (BF-BOIN-ET),
a novel clinical trial methodology for dose optimization that simultaneously consider both efficacy
and toxicity outcome as described in (Takeda et al (2025) <doi:10.1002/pst.2470>).
The package has been extended to include a seamless two-stage phase I/II trial design with backfill
and joint efficacy and toxicity monitoring as described in (Takeda et al (2026) <doi:10.1002/pst.70092>).
Author: Jing Zhu [cre, aut],
Kentaro Takeda [aut],
Belay Birlie Yimer [aut]
Maintainer: Jing Zhu <zhujing716@gmail.com>
Diff between bfboinet versions 1.0.0 dated 2026-04-14 and 1.1.0 dated 2026-04-29
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NEWS.md | 22 +++++++++++++--------- 3 files changed, 20 insertions(+), 16 deletions(-)
Title: Deconvolution of Bulk RNA-Seq Data using Single-Cell RNA-Seq
Data as Reference
Description: Streamlined workflow from deconvolution of bulk RNA-seq data to downstream differential expression and gene-set enrichment analysis. Provide various visualization functions.
Author: Yuanhang Liu [aut, cre]
Maintainer: Yuanhang Liu <liu.yuanhang@mayo.edu>
Diff between SCdeconR versions 1.0.0 dated 2024-03-22 and 1.0.2 dated 2026-04-29
SCdeconR-1.0.0/SCdeconR/inst/extdata/image |only SCdeconR-1.0.2/SCdeconR/DESCRIPTION | 10 ++--- SCdeconR-1.0.2/SCdeconR/MD5 | 35 +++++++++----------- SCdeconR-1.0.2/SCdeconR/R/deconvolution.R | 27 ++++++--------- SCdeconR-1.0.2/SCdeconR/R/differential_expression.R | 23 +++++-------- SCdeconR-1.0.2/SCdeconR/R/helpers.R | 2 - SCdeconR-1.0.2/SCdeconR/R/pathway_analysis.R | 13 ++----- SCdeconR-1.0.2/SCdeconR/R/reference_construction.R | 5 +- SCdeconR-1.0.2/SCdeconR/R/simulate_bulk.R | 8 ++-- SCdeconR-1.0.2/SCdeconR/README.md | 2 - SCdeconR-1.0.2/SCdeconR/man/bulk_generator.Rd | 2 - SCdeconR-1.0.2/SCdeconR/man/comparedeg_scatter.Rd | 3 - SCdeconR-1.0.2/SCdeconR/man/compute_metrics.Rd | 6 +-- SCdeconR-1.0.2/SCdeconR/man/construct_ref.Rd | 4 +- SCdeconR-1.0.2/SCdeconR/man/gsea_sumplot.Rd | 3 - SCdeconR-1.0.2/SCdeconR/man/prop_barplot.Rd | 3 - SCdeconR-1.0.2/SCdeconR/man/run_de.Rd | 14 ++++---- SCdeconR-1.0.2/SCdeconR/man/scaling.Rd | 2 - SCdeconR-1.0.2/SCdeconR/man/scdecon.Rd | 12 ++---- 19 files changed, 74 insertions(+), 100 deletions(-)
Title: Parsing Glycan Structure Text Representations
Description: Provides functions to parse glycan structure text representations
into 'glyrepr' glycan structures. Currently, it supports StrucGP-style,
pGlyco-style, IUPAC-condensed, IUPAC-extended, IUPAC-short, WURCS,
Linear Code, and GlycoCT format. It also provides an automatic parser
to detect the format and parse the structure string.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glyparse versions 0.5.7 dated 2026-03-14 and 0.6.0 dated 2026-04-29
DESCRIPTION | 8 - MD5 | 50 ++++---- NEWS.md | 6 R/auto-parse.R | 6 R/parse-glycoct.R | 6 R/parse-iupac-condensed.R | 6 R/parse-iupac-extended.R | 6 R/parse-iupac-short.R | 6 R/parse-linear-code.R | 6 R/parse-pglyco.R | 6 R/parse-strucgp.R | 6 R/parse-wurcs.R | 6 R/struc-parser-wrapper.R | 232 ++++++++++++++++++++++++++++++-------- README.md | 2 inst/doc/glyparse.html | 9 - man/auto_parse.Rd | 5 man/parse_glycoct.Rd | 5 man/parse_iupac_condensed.Rd | 5 man/parse_iupac_extended.Rd | 5 man/parse_iupac_short.Rd | 5 man/parse_linear_code.Rd | 5 man/parse_pglyco_struc.Rd | 5 man/parse_strucgp_struc.Rd | 5 man/parse_wurcs.Rd | 5 tests/testthat/test-na-support.R | 80 +++++++++++-- tests/testthat/test-performance.R | 23 +++ 26 files changed, 395 insertions(+), 114 deletions(-)
Title: Tools for Microclimate and Biophysical Ecology
Description: Tools for translating environmental change into organismal response. Microclimate models to vertically scale weather station data to organismal heights. The biophysical modeling tools include both general models for heat flows and specific models to predict body temperatures for a variety of ectothermic taxa. Additional functions model and temporally partition air and soil temperatures and solar radiation. Utility functions estimate the organismal and environmental parameters needed for biophysical ecology. 'TrenchR' focuses on relatively simple and modular functions so users can create transparent and flexible biophysical models. Many functions are derived from Gates (1980) <doi:10.1007/978-1-4612-6024-0> and Campbell and Norman (1988) <isbn:9780387949376>.
Author: Lauren Buckley [aut, cre] ,
Bryan Briones Ortiz [aut],
Isaac Caruso [aut],
Aji John [aut] ,
Ofir Levy [aut] ,
Abigail Meyer [aut],
Eric Riddell [aut] ,
Yutaro Sakairi [aut],
Juniper Simonis [aut] ,
Brian Helmuth [ctb]
Maintainer: Lauren Buckley <lbuckley@uw.edu>
Diff between TrenchR versions 1.1.1 dated 2023-09-13 and 1.2.1 dated 2026-04-28
DESCRIPTION | 21 MD5 | 54 NEWS.md | 39 R/AllometricFunctions.R | 199 R/DRYWETAIR.R | 64 R/DTRFunctions.R | 92 R/RadiationFunctions.R | 15 R/RadiationPartitioningFunctions.R | 51 R/TempWindProfileFunctions.R | 191 R/TrenchR-package.R | 23 R/biophysmodel_Colias.R | 34 R/biophysmodel_Grasshopper.R | 17 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/AllometryAndConversionsTutorial.html | 1029 ++- inst/doc/MicroclimateTutorial.html | 2641 ++++++---- inst/doc/Symbols.html | 720 +- inst/doc/TeTutorial.html | 5777 +++++++++++++--------- man/DRYAIR.Rd | 27 man/TrenchR-package.Rd | 14 man/WETAIR.Rd | 35 man/diurnal_temp_variation_sine.Rd | 2 man/diurnal_temp_variation_sineexp.Rd | 26 man/diurnal_temp_variation_sinesqrt.Rd | 2 tests/testthat/test-02-biophysmodel_Colias.R | 2 tests/testthat/test-05-biophysmodel_Grasshopper.R | 2 tests/testthat/test-28-TempWindProfileFunctions.R | 6 28 files changed, 6628 insertions(+), 4457 deletions(-)
Title: Bayesian Methods for Image Segmentation using a Potts Model
Description: Various algorithms for segmentation of 2D and 3D images, such
as computed tomography and satellite remote sensing. This package implements
Bayesian image analysis using the hidden Potts model with external field
prior of Moores et al. (2015) <doi:10.1016/j.csda.2014.12.001>.
Latent labels are sampled using chequerboard updating or Swendsen-Wang.
Algorithms for the smoothing parameter include pseudolikelihood, path sampling,
the exchange algorithm, approximate Bayesian computation (ABC-MCMC and ABC-SMC),
and the parametric functional approximate Bayesian (PFAB) algorithm. Refer to
Moores, Pettitt & Mengersen (2020) <doi:10.1007/978-3-030-42553-1_6> for an overview
and also to <doi:10.1007/s11222-014-9525-6> and <doi:10.1214/18-BA1130> for
further details of specific algorithms.
Author: Matt Moores [aut, cre, cph] ,
Dai Feng [ctb],
Kerrie Mengersen [aut, ths]
Maintainer: Matt Moores <mmoores@gmail.com>
Diff between bayesImageS versions 0.7-0 dated 2025-10-10 and 0.7-1 dated 2026-04-28
bayesImageS-0.7-0/bayesImageS/vignettes/bcrit2d-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/bcrit2d_sd-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/bcrit3d-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/bcrit3d_sd-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/beta_ct-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/ct_hist-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/elapsed2D-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/elapsed3D-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/elapsed_ct-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/exact_exp_k-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/exact_exp_n-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/exact_var_k-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/exact_var_n-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/jsslogo.jpg |only bayesImageS-0.7-0/bayesImageS/vignettes/mcmc_err2D_ABC-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/mcmc_err2D_MAVM-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/mcmc_err2D_PL-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/mcmc_err2D_TI-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/ndvi_hist-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/path2d-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/path3d-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/pl_exp_n12k3-eps-converted-to.pdf |only bayesImageS-0.7-0/bayesImageS/vignettes/pl_sd_n12k3-eps-converted-to.pdf |only bayesImageS-0.7-1/bayesImageS/DESCRIPTION | 8 bayesImageS-0.7-1/bayesImageS/LICENSE | 678 bayesImageS-0.7-1/bayesImageS/MD5 | 99 bayesImageS-0.7-1/bayesImageS/NAMESPACE | 36 bayesImageS-0.7-1/bayesImageS/NEWS.md | 7 bayesImageS-0.7-1/bayesImageS/R/data.R | 110 bayesImageS-0.7-1/bayesImageS/R/getBlocks.R | 176 bayesImageS-0.7-1/bayesImageS/R/getEdges.R | 158 bayesImageS-0.7-1/bayesImageS/R/getNeighbors.R | 602 bayesImageS-0.7-1/bayesImageS/R/mcmcPotts.R | 252 bayesImageS-0.7-1/bayesImageS/R/smcPotts.R | 136 bayesImageS-0.7-1/bayesImageS/README.md | 27 bayesImageS-0.7-1/bayesImageS/build/partial.rdb |binary bayesImageS-0.7-1/bayesImageS/build/vignette.rds |binary bayesImageS-0.7-1/bayesImageS/inst/doc/Background.Rmd | 270 bayesImageS-0.7-1/bayesImageS/inst/doc/Background.html | 4 bayesImageS-0.7-1/bayesImageS/inst/doc/mcmcPotts.Rmd | 284 bayesImageS-0.7-1/bayesImageS/inst/doc/mcmcPotts.html | 9 bayesImageS-0.7-1/bayesImageS/inst/doc/mcmcPottsNoData.Rmd | 266 bayesImageS-0.7-1/bayesImageS/inst/doc/mcmcPottsNoData.html | 13 bayesImageS-0.7-1/bayesImageS/inst/image/README-unnamed-chunk-8-1.png |binary bayesImageS-0.7-1/bayesImageS/src/Makevars.win | 4 bayesImageS-0.7-1/bayesImageS/vignettes/Background.Rmd | 270 bayesImageS-0.7-1/bayesImageS/vignettes/InverseTemperature.bib | 2136 - bayesImageS-0.7-1/bayesImageS/vignettes/beta_ct.eps | 5524 +-- bayesImageS-0.7-1/bayesImageS/vignettes/elapsed_ct.eps | 654 bayesImageS-0.7-1/bayesImageS/vignettes/exact_exp_k.eps | 1022 bayesImageS-0.7-1/bayesImageS/vignettes/exact_exp_n.eps | 1236 bayesImageS-0.7-1/bayesImageS/vignettes/exact_var_k.eps | 1052 bayesImageS-0.7-1/bayesImageS/vignettes/exact_var_n.eps | 1266 bayesImageS-0.7-1/bayesImageS/vignettes/mcmcPotts.Rmd | 284 bayesImageS-0.7-1/bayesImageS/vignettes/mcmcPottsNoData.Rmd | 266 bayesImageS-0.7-1/bayesImageS/vignettes/mcmc_err2D_ABC.eps |16466 +++++----- bayesImageS-0.7-1/bayesImageS/vignettes/mcmc_err2D_MAVM.eps |16466 +++++----- bayesImageS-0.7-1/bayesImageS/vignettes/mcmc_err2D_PL.eps |16466 +++++----- bayesImageS-0.7-1/bayesImageS/vignettes/mcmc_err2D_TI.eps |16466 +++++----- bayesImageS-0.7-1/bayesImageS/vignettes/pl_exp_n12k3.eps | 778 bayesImageS-0.7-1/bayesImageS/vignettes/pl_sd_n12k3.eps | 778 bayesImageS-0.7-1/bayesImageS/vignettes/refs.bib | 600 62 files changed, 42426 insertions(+), 42443 deletions(-)
Title: Viral Quasispecies Comparison from Long-Read Sequencing Data
Description: Performs variety of viral quasispecies diversity analyses [see Pamornchainavakul et al. (2026) <doi:10.1371/journal.pcbi.1014208>] based on long-read sequence alignment. Main functions include 1) sequencing error and other noise minimization and read sampling, 2) Single nucleotide variant (SNV) profiles comparison, and 3) viral quasispecies profiles comparison and visualization.
Author: Nakarin Pamornchainavakul [aut, cre]
Maintainer: Nakarin Pamornchainavakul <pamornakarin@gmail.com>
Diff between longreadvqs versions 0.1.4 dated 2025-10-20 and 0.1.5 dated 2026-04-28
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 9 +++++++++ R/pctopt.R | 4 ++-- README.md | 6 +++++- inst/doc/longreadvqs-vignette.Rmd | 2 +- inst/doc/longreadvqs-vignette.html | 27 +++++++++++++++------------ man/longreadvqs-package.Rd | 2 +- man/pctopt.Rd | 2 +- vignettes/longreadvqs-vignette.Rmd | 2 +- 10 files changed, 48 insertions(+), 32 deletions(-)
Title: Spatial Accessibility Measures
Description: Provides a set of spatial accessibility measures from a set of locations
(demand) to another set of locations (supply). It aims, among others,
to support research on spatial accessibility to health care facilities.
Includes the locations and some characteristics of major public hospitals in Greece.
Author: Stamatis Kalogirou [aut, cre]
Maintainer: Stamatis Kalogirou <stamatis.science@gmail.com>
Diff between SpatialAcc versions 0.1-5 dated 2024-04-01 and 0.1-6 dated 2026-04-28
DESCRIPTION | 8 +-- MD5 | 22 +++++----- NAMESPACE | 5 +- R/ac.R | 92 +++++++++++++++++++++--------------------- R/distance.R | 38 ++++++++++------- data/GR.Hospitals.RData |binary data/PWC.Municipalities.RData |binary man/GR.Hospitals.Rd | 34 +++++++-------- man/PWC.Municipalities.Rd | 12 ++--- man/SpatialAcc-package.Rd | 4 - man/ac.Rd | 23 +++++----- man/distance.Rd | 26 +++++------ 12 files changed, 140 insertions(+), 124 deletions(-)
Title: Provides Batch Functions and Visualisation for Basic Statistical
Procedures
Description: Designed to streamline data analysis and statistical testing, reducing the length of R
scripts while generating well-formatted outputs in 'pdf', 'Microsoft Word', and 'Microsoft Excel'
formats. In essence, the package contains functions which are sophisticated wrappers around
existing R functions that are called by using 'f_' (user f_riendly) prefix followed by the normal
function name. This third version of the 'rfriend' package focuses primarily on data exploration,
including tools for creating summary tables, f_summary(), summary figures, f_scan(),
outlier detection and removal, f_outlier() and f_remove_outliers(), performing data transformations,
f_boxcox() in part based on 'MASS/boxcox' and 'rcompanion', and f_bestNormalize()
which wraps and extends functionality from the 'bestNormalize' package. Furthermore, 'rfriend'
can automatically (or on request) generate visualizations such as boxplots, f_boxplot(),
QQ-plots, f_qqnorm(), histograms f_hist(), and density plots f_density(). [...truncated...]
Author: Sander H. van Delden [aut, cre]
Maintainer: Sander H. van Delden <plantmind@proton.me>
Diff between rfriend versions 2.0.0 dated 2025-11-11 and 3.0.0 dated 2026-04-28
rfriend-2.0.0/rfriend/man/f_model_comparison.Rd |only rfriend-3.0.0/rfriend/DESCRIPTION | 47 rfriend-3.0.0/rfriend/MD5 | 125 rfriend-3.0.0/rfriend/NAMESPACE | 79 rfriend-3.0.0/rfriend/NEWS.md | 250 rfriend-3.0.0/rfriend/R/df_to_table.R |only rfriend-3.0.0/rfriend/R/faov.R | 3626 ++++++---- rfriend-3.0.0/rfriend/R/fbestnormalize.R | 1267 +-- rfriend-3.0.0/rfriend/R/fboxcox.R | 1562 ++-- rfriend-3.0.0/rfriend/R/fboxplot.R | 1566 ++-- rfriend-3.0.0/rfriend/R/fchisq_test.R | 482 - rfriend-3.0.0/rfriend/R/fconditional_round.R | 366 - rfriend-3.0.0/rfriend/R/fcorplot.R | 1469 ++-- rfriend-3.0.0/rfriend/R/ffactors.R | 2 rfriend-3.0.0/rfriend/R/fglm.R | 2412 ++++-- rfriend-3.0.0/rfriend/R/fkruskal_test.R | 1689 ++-- rfriend-3.0.0/rfriend/R/flmer.R |only rfriend-3.0.0/rfriend/R/flong.R |only rfriend-3.0.0/rfriend/R/fmodel_compare.R | 1039 +- rfriend-3.0.0/rfriend/R/fopen_file.R | 116 rfriend-3.0.0/rfriend/R/foutliers.R |only rfriend-3.0.0/rfriend/R/fpander.R | 53 rfriend-3.0.0/rfriend/R/fremove_outliers.R |only rfriend-3.0.0/rfriend/R/fscan.R |only rfriend-3.0.0/rfriend/R/fstat_wizard.R |only rfriend-3.0.0/rfriend/R/fsummary.R | 776 +- rfriend-3.0.0/rfriend/R/ftheme.R | 2 rfriend-3.0.0/rfriend/R/fttest.R |only rfriend-3.0.0/rfriend/R/fwilcox_test.R |only rfriend-3.0.0/rfriend/R/helper_check_lhs.R |only rfriend-3.0.0/rfriend/R/helper_insert_newline.R | 31 rfriend-3.0.0/rfriend/R/helper_safe_shapiro.R |only rfriend-3.0.0/rfriend/R/helper_session_state.R |only rfriend-3.0.0/rfriend/R/import.R | 62 rfriend-3.0.0/rfriend/build |only rfriend-3.0.0/rfriend/inst/rmarkdown/templates/MS_word_style.docx |binary rfriend-3.0.0/rfriend/inst/rmarkdown/templates/odt_style.odt |only rfriend-3.0.0/rfriend/man/df_to_table.Rd |only rfriend-3.0.0/rfriend/man/f_aov.Rd | 109 rfriend-3.0.0/rfriend/man/f_bestNormalize.Rd | 100 rfriend-3.0.0/rfriend/man/f_boxcox.Rd | 33 rfriend-3.0.0/rfriend/man/f_boxplot.Rd | 73 rfriend-3.0.0/rfriend/man/f_chisq_test.Rd | 16 rfriend-3.0.0/rfriend/man/f_conditional_round.Rd | 37 rfriend-3.0.0/rfriend/man/f_corplot.Rd | 157 rfriend-3.0.0/rfriend/man/f_factors.Rd | 2 rfriend-3.0.0/rfriend/man/f_glm.Rd | 91 rfriend-3.0.0/rfriend/man/f_kruskal_test.Rd | 86 rfriend-3.0.0/rfriend/man/f_lmer.Rd |only rfriend-3.0.0/rfriend/man/f_long.Rd |only rfriend-3.0.0/rfriend/man/f_model_compare.Rd |only rfriend-3.0.0/rfriend/man/f_outliers.Rd |only rfriend-3.0.0/rfriend/man/f_pander.Rd | 27 rfriend-3.0.0/rfriend/man/f_remove_outliers.Rd |only rfriend-3.0.0/rfriend/man/f_scan.Rd |only rfriend-3.0.0/rfriend/man/f_stat_wizard.Rd |only rfriend-3.0.0/rfriend/man/f_summary.Rd | 191 rfriend-3.0.0/rfriend/man/f_t_test.Rd |only rfriend-3.0.0/rfriend/man/f_theme.Rd | 2 rfriend-3.0.0/rfriend/man/f_wilcox_test.Rd |only rfriend-3.0.0/rfriend/man/plot.f_kruskal_test.Rd |only rfriend-3.0.0/rfriend/man/plot.f_lmer.Rd |only rfriend-3.0.0/rfriend/man/plot.f_long.Rd |only rfriend-3.0.0/rfriend/man/predict.f_boxcox.Rd |only rfriend-3.0.0/rfriend/man/print.f_outliers.Rd |only rfriend-3.0.0/rfriend/man/print.f_scan.Rd |only rfriend-3.0.0/rfriend/man/print.f_stat_wizard.Rd |only rfriend-3.0.0/rfriend/man/print.f_summary.Rd | 26 rfriend-3.0.0/rfriend/man/summary.f_long.Rd |only rfriend-3.0.0/rfriend/tests |only 70 files changed, 10932 insertions(+), 7039 deletions(-)
Title: Hierarchical Bayesian Aldrich-McKelvey Scaling via 'Stan'
Description: Perform hierarchical Bayesian Aldrich-McKelvey scaling using Hamiltonian Monte
Carlo via 'Stan'. Aldrich-McKelvey ('AM') scaling is a method for estimating the ideological
positions of survey respondents and political actors on a common scale using positional survey
data. The hierarchical versions of the Bayesian 'AM' model included in this package outperform
other versions both in terms of yielding meaningful posterior distributions for respondent
positions and in terms of recovering true respondent positions in simulations. The package
contains functions for preparing data, fitting models, extracting estimates, plotting key
results, and comparing models using cross-validation. The original version of the default
model is described in Bølstad (2024) <doi:10.1017/pan.2023.18>.
Author: Joergen Boelstad [aut, cre]
Maintainer: Joergen Boelstad <jorgen.bolstad@stv.uio.no>
Diff between hbamr versions 2.4.5 dated 2026-02-14 and 2.4.6 dated 2026-04-28
DESCRIPTION | 6 MD5 | 28 NEWS.md | 8 build/partial.rdb |binary build/vignette.rds |binary inst/doc/hbamr.html | 1901 -------------------------------------------- src/stanExports_omni.h | 185 ++-- vignettes/p_abs_beta.svg | 371 ++++---- vignettes/p_alpha.svg | 407 ++++----- vignettes/p_chi.svg | 517 +++++------ vignettes/p_eta.svg | 208 ++-- vignettes/p_lambda.svg | 686 +++++++-------- vignettes/p_resp.svg | 155 +-- vignettes/p_stim.svg | 108 +- vignettes/p_trace_theta.svg | 720 ++++++++-------- 15 files changed, 1727 insertions(+), 3573 deletions(-)
Title: Modern Base-R Functions
Description: Includes modern base-R functions. Functions beginning with p_ are wrapper functions for existing base-R functions, supporting native piping. Other functions are wrapper functions for core base-R features, including bracket notation and dollar-sign notation. base_match() and base_when() mimic case_match() and case_when() from 'dplyr' but return a factor by default with levels ordered according to user input. et() mimics count() from 'dplyr'.
Author: Yea-Hung Chen [aut, cre]
Maintainer: Yea-Hung Chen <yea-hung.chen@ucsf.edu>
Diff between baseverse versions 0.1.0 dated 2026-04-13 and 0.1.4 dated 2026-04-28
DESCRIPTION | 10 +++-- MD5 | 55 ++++++++++++++++++----------- NAMESPACE | 4 ++ R/bang.r |only R/base_match.r | 4 +- R/base_when.r | 3 + R/bracket.r |only R/dollar.r |only R/et.r | 4 +- R/not.r |only R/p_cor.r | 2 - R/p_glm.r | 8 ++-- R/p_lm.r | 8 ++-- R/p_t.test.r | 2 - R/p_table.r | 2 - R/p_wilcox.test.r | 2 - README.md | 94 ++++++++++++++++++--------------------------------- build |only inst |only man/bang.Rd |only man/base_match.Rd | 4 +- man/base_when.Rd | 3 + man/bracket.Rd |only man/dollar.Rd |only man/et.Rd | 4 +- man/not.Rd |only man/p_cor.Rd | 2 - man/p_glm.Rd | 8 ++-- man/p_lm.Rd | 8 ++-- man/p_t.test.Rd | 2 - man/p_table.Rd | 2 - man/p_wilcox.test.Rd | 2 - vignettes |only 33 files changed, 115 insertions(+), 118 deletions(-)
Title: Sparse Multiple Canonical Correlation Network Analysis Tool
('SmCCNet')
Description: A canonical correlation based framework ('SmCCNet') designed for the construction of phenotype-specific multi-omics networks. This framework adeptly integrates single or multiple omics data types along with a quantitative or binary phenotype of interest. It offers a streamlined setup process that can be tailored manually or configured automatically, ensuring a flexible and user-friendly experience. Methods are described in Shi et al. (2019) "Unsupervised discovery of phenotype-specific multi-omics networks" <doi:10.1093/bioinformatics/btz226>.
Author: Abhinav Pundir [cre],
Weixuan Liu [aut],
Yonghua Zhuang [aut],
W. Jenny Shi [aut],
Thao Vu [aut],
Iain Konigsberg [aut],
Katherine Pratte [aut],
Laura Saba [aut],
Katerina Kechris [aut]
Maintainer: Abhinav Pundir <abhinav.pundir@ucdenver.edu>
This is a re-admission after prior archival of version 2.0.3 dated 2024-04-16
Diff between SmCCNet versions 2.0.3 dated 2024-04-16 and 2.0.6 dated 2026-04-28
DESCRIPTION | 64 - MD5 | 59 - R/AutoSmCCNet.R | 694 ++++++------- R/ModifiedPMA.R | 4 R/MultiOmicsSmCCA.R | 22 R/SmCCNet-source.R | 370 +++---- build/vignette.rds |binary inst/doc/SmCCNet_Vignette_AutoSmCCNet.R | 80 - inst/doc/SmCCNet_Vignette_AutoSmCCNet.Rmd | 12 inst/doc/SmCCNet_Vignette_AutoSmCCNet.pdf |binary inst/doc/SmCCNet_Vignette_MultiOmics.R | 1460 ++++++++++++++--------------- inst/doc/SmCCNet_Vignette_MultiOmics.Rmd | 12 inst/doc/SmCCNet_Vignette_MultiOmics.pdf |binary inst/doc/SmCCNet_Vignette_SingleOmics.R | 840 ++++++++-------- inst/doc/SmCCNet_Vignette_SingleOmics.Rmd | 10 inst/doc/SmCCNet_Vignette_SingleOmics.pdf |binary man/aggregateCVSingle.Rd | 10 man/fastAutoSmCCNet.Rd | 70 - man/getCanWeightsMulti.Rd | 20 man/getRobustWeightsMultiBinary.Rd | 46 man/networkPruning.Rd | 20 man/scalingFactorInput.Rd | 3 vignettes/CVResult.csv |only vignettes/SmCCNet_Vignette_AutoSmCCNet.Rmd | 12 vignettes/SmCCNet_Vignette_MultiOmics.Rmd | 12 vignettes/SmCCNet_Vignette_SingleOmics.Rmd | 10 vignettes/globalNetwork.Rdata |only vignettes/size_11_net_2.Rdata |only vignettes/size_12_net_1.Rdata |only vignettes/size_12_net_3.Rdata |only vignettes/size_15_net_2.Rdata |only vignettes/size_16_net_1.Rdata |only vignettes/size_18_net_1.Rdata |only vignettes/size_22_net_3.Rdata |only vignettes/size_26_net_2.Rdata |only vignettes/size_35_net_1.Rdata |only 36 files changed, 1951 insertions(+), 1879 deletions(-)
More information about K4PrestasiSiswa at CRAN
Permanent link
Title: Stochastic Tree Ensembles (XBART and BART) for Supervised
Learning and Causal Inference
Description: Flexible stochastic tree ensemble software.
Robust implementations of Bayesian Additive Regression Trees (BART)
(Chipman, George, McCulloch (2010) <doi:10.1214/09-AOAS285>)
for supervised learning and Bayesian Causal Forests (BCF)
(Hahn, Murray, Carvalho (2020) <doi:10.1214/19-BA1195>)
for causal inference. Enables model serialization and parallel sampling
and provides a low-level interface for custom stochastic forest samplers.
Includes the grow-from-root algorithm for accelerated forest sampling
(He and Hahn (2021) <doi:10.1080/01621459.2021.1942012>),
a log-linear leaf model for forest-based heteroskedasticity (Murray (2020) <doi:10.1080/01621459.2020.1813587>),
and the cloglog BART model of Alam and Linero (2025) <doi:10.48550/arXiv.2502.00606> for ordinal outcomes.
Author: Drew Herren [aut, cre] ,
Richard Hahn [aut],
Jared Murray [aut],
Carlos Carvalho [aut],
Jingyu He [aut],
Pedro Lima [ctb],
Entejar Alam [ctb],
stochtree contributors [cph],
Eigen contributors [cph] ,
xgboost contributors [cph] ,
treelite contributors [...truncated...]
Maintainer: Drew Herren <drewherrenopensource@gmail.com>
Diff between stochtree versions 0.4.0 dated 2026-03-06 and 0.4.2 dated 2026-04-28
DESCRIPTION | 6 MD5 | 140 +- NEWS.md | 34 R/bart.R | 590 +++++++++-- R/bcf.R | 1385 +++++++++++++++++++++++---- R/calibration.R | 2 R/config.R | 4 R/data.R | 6 R/forest.R | 10 R/generics.R | 4 R/kernel.R | 6 R/model.R | 6 R/posterior_transformation.R | 98 + R/random_effects.R | 16 R/serialization.R | 22 R/utils.R | 72 + R/variance.R | 4 configure | 18 configure.ac | 2 man/OutcomeModel.Rd | 4 man/bart.Rd | 11 man/bcf.Rd | 30 man/calibrateInverseGammaErrorVariance.Rd | 2 man/computeBARTPosteriorInterval.Rd | 2 man/computeBCFPosteriorInterval.Rd | 2 man/computeContrastBARTModel.Rd | 2 man/computeContrastBCFModel.Rd | 2 man/createCppRNG.Rd | 2 man/createForest.Rd | 2 man/createForestDataset.Rd | 2 man/createForestModel.Rd | 2 man/createForestModelConfig.Rd | 2 man/createForestSamples.Rd | 2 man/createGlobalModelConfig.Rd | 2 man/createOutcome.Rd | 2 man/createRandomEffectSamples.Rd | 2 man/createRandomEffectsDataset.Rd | 2 man/createRandomEffectsModel.Rd | 2 man/createRandomEffectsTracker.Rd | 2 man/extractParameter.Rd | 2 man/extractParameter.bartmodel.Rd | 2 man/extractParameter.bcfmodel.Rd | 3 man/getRandomEffectSamples.Rd | 2 man/getRandomEffectSamples.bartmodel.Rd | 2 man/getRandomEffectSamples.bcfmodel.Rd | 2 man/loadScalarJson.Rd | 2 man/loadVectorJson.Rd | 2 man/plot.bartmodel.Rd | 2 man/plot.bcfmodel.Rd | 2 man/predict.bartmodel.Rd | 2 man/predict.bcfmodel.Rd | 2 man/print.ForestSamples.Rd | 2 man/print.RandomEffectSamples.Rd | 2 man/print.bartmodel.Rd | 2 man/print.bcfmodel.Rd | 2 man/sampleBARTPosteriorPredictive.Rd | 2 man/sampleBCFPosteriorPredictive.Rd | 2 man/sampleGlobalErrorVarianceOneIteration.Rd | 2 man/sampleLeafVarianceOneIteration.Rd | 2 man/sample_without_replacement.Rd | 2 man/summary.bartmodel.Rd | 4 man/summary.bcfmodel.Rd | 4 src/forest.cpp | 2 src/include/stochtree/category_tracker.h | 2 src/include/stochtree/leaf_model.h | 24 src/stochtree_types.h | 6 tests/testthat/test-bcf.R | 249 ++++ tests/testthat/test-extract-parameter.R | 16 tests/testthat/test-multi-chain.R |only tests/testthat/test-observation-weights.R |only tests/testthat/test-print-summary.R | 6 tests/testthat/test-serialization.R | 74 + 72 files changed, 2375 insertions(+), 559 deletions(-)
More information about RMSTpowerBoost at CRAN
Permanent link
More information about OmopStudyBuilder at CRAN
Permanent link
More information about rtForecastEval at CRAN
Permanent link
Title: Multiplexed Primer Design by Linear Set Coverage Approximation
Description: Implementation of an oligonucleotide primer and probe design algorithm using a linearly scaling approximation of set coverage. A detailed description available at Smolander and Tamminen, 2021; <doi:10.1101/2021.09.06.459073>.
Author: Manu Tamminen [aut, cre] ,
Niina Smolander [aut]
Maintainer: Manu Tamminen <mavatam@utu.fi>
This is a re-admission after prior archival of version 1.0.4 dated 2022-03-11
Diff between prider versions 1.0.4 dated 2022-03-11 and 1.0.6 dated 2026-04-28
DESCRIPTION | 18 +++++++-------- MD5 | 13 ++++++----- NAMESPACE | 1 R/prider.R | 53 ++++++++++++++++++++++++++++++++++++++--------- README.md | 2 - build |only man/prepare_primer_df.Rd | 7 ++++++ man/prider.Rd | 17 +++++++++++++++ 8 files changed, 84 insertions(+), 27 deletions(-)
Title: Download Australian Energy Market Operator Data
Description: Fetch Australian Energy Market Operator ('AEMO')
public data from 'NEMweb' <http://nemweb.com.au> and the
Market Management System Data Model ('MMSDM') historical
archive. Provides tidy access to 5-minute and 30-minute
wholesale electricity prices, regional demand, dispatch-unit
output, interconnector flows, rooftop photovoltaic generation,
generator bids, predispatch forecasts, frequency control
ancillary services markets, and gas market data across the
National Electricity Market ('NEM') regions. Data is published
by AEMO under its Copyright Permissions Notice
<https://www.aemo.com.au/privacy-and-legal-notices/copyright-permissions>.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
This is a re-admission after prior archival of version 0.3.0 dated 2020-04-04
Diff between aemo versions 0.3.0 dated 2020-04-04 and 0.4.0 dated 2026-04-28
aemo-0.3.0/aemo/NEWS |only aemo-0.3.0/aemo/R/aemo.R |only aemo-0.3.0/aemo/README.md |only aemo-0.3.0/aemo/data |only aemo-0.3.0/aemo/man/aemo.Rd |only aemo-0.3.0/aemo/man/clean_up_aemo_data_files.Rd |only aemo-0.3.0/aemo/man/collate_aemo_data.Rd |only aemo-0.3.0/aemo/man/get_aemo_data.Rd |only aemo-0.3.0/aemo/tests/testthat/test-aemo.R |only aemo-0.4.0/aemo/DESCRIPTION | 54 +++++---- aemo-0.4.0/aemo/LICENSE |only aemo-0.4.0/aemo/MD5 | 109 +++++++++++++++++--- aemo-0.4.0/aemo/NAMESPACE | 34 +++++- aemo-0.4.0/aemo/NEWS.md |only aemo-0.4.0/aemo/R/aemo-package.R |only aemo-0.4.0/aemo/R/aemo_tbl.R |only aemo-0.4.0/aemo/R/bids.R |only aemo-0.4.0/aemo/R/cache.R |only aemo-0.4.0/aemo/R/constraints.R |only aemo-0.4.0/aemo/R/csv_parse.R |only aemo-0.4.0/aemo/R/demand.R |only aemo-0.4.0/aemo/R/dispatch.R |only aemo-0.4.0/aemo/R/forecasts.R |only aemo-0.4.0/aemo/R/gas.R |only aemo-0.4.0/aemo/R/http.R |only aemo-0.4.0/aemo/R/interconnector.R |only aemo-0.4.0/aemo/R/loss_factors.R |only aemo-0.4.0/aemo/R/market_notices.R |only aemo-0.4.0/aemo/R/nemweb.R |only aemo-0.4.0/aemo/R/outages.R |only aemo-0.4.0/aemo/R/price.R |only aemo-0.4.0/aemo/R/price_caps.R |only aemo-0.4.0/aemo/R/reference.R |only aemo-0.4.0/aemo/R/rooftop_pv.R |only aemo-0.4.0/aemo/R/settlement.R |only aemo-0.4.0/aemo/R/snapshot.R |only aemo-0.4.0/aemo/R/utils.R |only aemo-0.4.0/aemo/build |only aemo-0.4.0/aemo/inst |only aemo-0.4.0/aemo/man/aemo-package.Rd |only aemo-0.4.0/aemo/man/aemo_bids.Rd |only aemo-0.4.0/aemo/man/aemo_cache_info.Rd |only aemo-0.4.0/aemo/man/aemo_clear_cache.Rd |only aemo-0.4.0/aemo/man/aemo_constraints.Rd |only aemo-0.4.0/aemo/man/aemo_demand.Rd |only aemo-0.4.0/aemo/man/aemo_dispatch_units.Rd |only aemo-0.4.0/aemo/man/aemo_dlf.Rd |only aemo-0.4.0/aemo/man/aemo_fcas.Rd |only aemo-0.4.0/aemo/man/aemo_fcas_enablement.Rd |only aemo-0.4.0/aemo/man/aemo_gas.Rd |only aemo-0.4.0/aemo/man/aemo_gencon.Rd |only aemo-0.4.0/aemo/man/aemo_interconnector.Rd |only aemo-0.4.0/aemo/man/aemo_interconnectors.Rd |only aemo-0.4.0/aemo/man/aemo_market_notices.Rd |only aemo-0.4.0/aemo/man/aemo_mlf.Rd |only aemo-0.4.0/aemo/man/aemo_nemweb_download.Rd |only aemo-0.4.0/aemo/man/aemo_nemweb_ls.Rd |only aemo-0.4.0/aemo/man/aemo_outages.Rd |only aemo-0.4.0/aemo/man/aemo_participants.Rd |only aemo-0.4.0/aemo/man/aemo_pasa.Rd |only aemo-0.4.0/aemo/man/aemo_predispatch.Rd |only aemo-0.4.0/aemo/man/aemo_price.Rd |only aemo-0.4.0/aemo/man/aemo_price_caps.Rd |only aemo-0.4.0/aemo/man/aemo_regions.Rd |only aemo-0.4.0/aemo/man/aemo_rooftop_pv.Rd |only aemo-0.4.0/aemo/man/aemo_settlement.Rd |only aemo-0.4.0/aemo/man/aemo_snapshot.Rd |only aemo-0.4.0/aemo/man/aemo_spd_constraints.Rd |only aemo-0.4.0/aemo/man/aemo_throttle.Rd |only aemo-0.4.0/aemo/man/aemo_units.Rd |only aemo-0.4.0/aemo/man/print.aemo_tbl.Rd |only aemo-0.4.0/aemo/tests/testthat.R | 2 aemo-0.4.0/aemo/tests/testthat/setup.R |only aemo-0.4.0/aemo/tests/testthat/test-aemo_tbl.R |only aemo-0.4.0/aemo/tests/testthat/test-as-of-filter.R |only aemo-0.4.0/aemo/tests/testthat/test-bids.R |only aemo-0.4.0/aemo/tests/testthat/test-cache.R |only aemo-0.4.0/aemo/tests/testthat/test-csv_parse.R |only aemo-0.4.0/aemo/tests/testthat/test-demand.R |only aemo-0.4.0/aemo/tests/testthat/test-digest-url.R |only aemo-0.4.0/aemo/tests/testthat/test-dispatch.R |only aemo-0.4.0/aemo/tests/testthat/test-fixture.R |only aemo-0.4.0/aemo/tests/testthat/test-forecasts.R |only aemo-0.4.0/aemo/tests/testthat/test-gas.R |only aemo-0.4.0/aemo/tests/testthat/test-http.R |only aemo-0.4.0/aemo/tests/testthat/test-loss-factors.R |only aemo-0.4.0/aemo/tests/testthat/test-pinned-values.R |only aemo-0.4.0/aemo/tests/testthat/test-price-30min.R |only aemo-0.4.0/aemo/tests/testthat/test-price-caps.R |only aemo-0.4.0/aemo/tests/testthat/test-price.R |only aemo-0.4.0/aemo/tests/testthat/test-reference.R |only aemo-0.4.0/aemo/tests/testthat/test-schema-drift.R |only aemo-0.4.0/aemo/tests/testthat/test-settlement.R |only aemo-0.4.0/aemo/tests/testthat/test-snapshot.R |only aemo-0.4.0/aemo/tests/testthat/test-utils.R |only aemo-0.4.0/aemo/vignettes |only 96 files changed, 159 insertions(+), 40 deletions(-)
Title: Necessary Condition Analysis
Description: Performs a Necessary Condition Analysis (NCA). (Dul, J. 2016. Necessary Condition Analysis (NCA). ''Logic and Methodology of 'Necessary but not Sufficient' causality." Organizational Research Methods 19(1), 10-52) <doi:10.1177/1094428115584005>.
NCA identifies necessary (but not sufficient) conditions in datasets, where x causes (e.g. precedes) y. Instead of drawing a regression line ''through the middle of the data'' in an xy-plot, NCA draws the ceiling line. The ceiling line y = f(x) separates the area with observations from the area without observations.
(Nearly) all observations are below the ceiling line: y <= f(x). The empty zone is in the upper left hand corner of the xy-plot (with the convention that the x-axis is ''horizontal'' and the y-axis is ''vertical'' and that values increase ''upwards'' and ''to the right''). The ceiling line is a (piecewise) linear non-decreasing line: a linear step function or a straight line. It indicates which level of x (e.g., an effort, [...truncated...]
Author: Jan Dul [aut],
Govert Buijs [cre]
Maintainer: Govert Buijs <buijs@rsm.nl>
Diff between NCA versions 5.0.0 dated 2026-03-20 and 5.0.1 dated 2026-04-28
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- R/nca_plotly.R | 2 +- R/nca_plots.R | 29 ++++++++++++++++++++++++----- man/NCA-package.Rd | 4 ++-- 5 files changed, 37 insertions(+), 17 deletions(-)
Title: Parametric Mortality Curve Fitting and Mortality Forecasting
Tools
Description: Provides tools for fitting parametric mortality curves. Implements multiple optimisation strategies to enhance robustness and stability of parameter estimation. Offers tools for forecasting mortality rates guided by mortality curves.
For modelling details see:
Tabeau (2001) <doi:10.1007/0-306-47562-6_1>,
Renshaw and Haberman (2006) <doi:10.1016/j.insmatheco.2005.12.001>,
Cairns et al. (2009) <doi:10.1080/10920277.2009.10597538>,
Li and Lee (2005) <doi: 10.1353/dem.2005.0021>.
Author: Jackie Li [aut, cre, cph]
Maintainer: Jackie Li <jackieli@smu.edu.sg>
Diff between demofit versions 0.1.2 dated 2026-04-09 and 0.1.3 dated 2026-04-28
demofit-0.1.2/demofit/NEWS.md |only demofit-0.1.3/demofit/DESCRIPTION | 13 +++-- demofit-0.1.3/demofit/MD5 | 56 +++++++++++++++---------- demofit-0.1.3/demofit/NAMESPACE | 25 +++++++++++ demofit-0.1.3/demofit/NEWS |only demofit-0.1.3/demofit/R/APCS.R | 65 ++++++++++++++++++++++------- demofit-0.1.3/demofit/R/CAES.R |only demofit-0.1.3/demofit/R/CBDCS.R | 69 ++++++++++++++++++++++++------- demofit-0.1.3/demofit/R/CBDQCS.R | 77 +++++++++++++++++++++++++++-------- demofit-0.1.3/demofit/R/CBDS.R | 52 ++++++++++++++++++++--- demofit-0.1.3/demofit/R/CFM2S.R |only demofit-0.1.3/demofit/R/ENI.R |only demofit-0.1.3/demofit/R/ENS.R | 5 +- demofit-0.1.3/demofit/R/LCS.R | 48 ++++++++++++++++++--- demofit-0.1.3/demofit/R/RHS.R | 66 ++++++++++++++++++++++-------- demofit-0.1.3/demofit/R/STARS.R | 52 ++++++++++++++++------- demofit-0.1.3/demofit/R/modelS3.R | 30 ++++++++++++- demofit-0.1.3/demofit/build |only demofit-0.1.3/demofit/inst/CITATION | 2 demofit-0.1.3/demofit/inst/doc |only demofit-0.1.3/demofit/man/APCS.Rd | 2 demofit-0.1.3/demofit/man/CAES.Rd |only demofit-0.1.3/demofit/man/CBDCS.Rd | 2 demofit-0.1.3/demofit/man/CBDQCS.Rd | 2 demofit-0.1.3/demofit/man/CBDS.Rd | 2 demofit-0.1.3/demofit/man/CFM2S.Rd |only demofit-0.1.3/demofit/man/ENI.Rd |only demofit-0.1.3/demofit/man/ENS.Rd | 3 + demofit-0.1.3/demofit/man/LCS.Rd | 2 demofit-0.1.3/demofit/man/RHS.Rd | 2 demofit-0.1.3/demofit/man/STARS.Rd | 2 demofit-0.1.3/demofit/man/modelS3.Rd | 8 ++- demofit-0.1.3/demofit/tests |only demofit-0.1.3/demofit/vignettes |only 34 files changed, 447 insertions(+), 138 deletions(-)
Title: Analysis of Microbial Social Behavior in Bacterial Consortia
Description: Provides an S4 class and methods for analyzing microbial social
behavior in bacterial consortia. Includes growth parameter extraction,
social behavior classification (cooperators/cheaters/neutrals),
diversity effect analysis, consortium assembly path finding, and
stability analysis via coefficient of variation. Methods are described
in Purswani et al. (2017) <doi:10.3389/fmicb.2017.00919>.
Author: Maria Garcia Toledo [aut],
Juan Emilio Martinez Manjon [aut, cre],
Jessica Purswani [aut],
Rocio Romero Zaliz [aut]
Maintainer: Juan Emilio Martinez Manjon <juanemartinez999@hotmail.com>
Diff between bsocialv2 versions 0.1.1 dated 2026-04-13 and 0.2.1 dated 2026-04-28
DESCRIPTION | 13 - MD5 | 43 ++-- NAMESPACE | 3 NEWS.md | 35 +++ R/analyze-diversity.R | 66 ------- R/analyze-growth.R | 14 - R/analyze-social-behavior.R | 116 +++++++------ R/bsocial-class.R | 2 R/bsocial-package.R | 2 R/plot-growth-scatter.R |only R/plot-processed-curves.R | 3 R/summarize-social-behavior.R | 214 +++++++++++++----------- build/partial.rdb |only inst/doc/bsocial-workflow.R | 100 +++++------ inst/doc/bsocial-workflow.html | 89 +++++---- man/analyze_diversity-bsocial-method.Rd | 4 man/analyze_diversity.Rd | 2 man/bsocialv2-package.Rd | 2 man/plot_growth_scatter.Rd |only man/summarize_social_behavior-bsocial-method.Rd | 7 tests/testthat/test-analyze-diversity.R | 26 ++ tests/testthat/test-analyze-growth.R | 11 + tests/testthat/test-plot-growth-scatter.R |only tests/testthat/test-plot-processed-curves.R |only tests/testthat/test-summarize-social-behavior.R | 65 +++++++ 25 files changed, 473 insertions(+), 344 deletions(-)
Title: Analyze and Visualize Data from 'Microsoft Viva Insights'
Description: Provides a versatile range of functions, including exploratory data analysis, time-series analysis, organizational network analysis, and data validation, whilst at the same time implements a set of best practices in analyzing and visualizing data specific to 'Microsoft Viva Insights'.
Author: Martin Chan [aut, cre],
Carlos Morales [aut]
Maintainer: Martin Chan <martin.chan@microsoft.com>
Diff between vivainsights versions 0.7.1 dated 2026-01-16 and 0.7.2 dated 2026-04-28
DESCRIPTION | 18 +- MD5 | 208 +++++++++++++++-------------- NAMESPACE | 8 + NEWS.md | 208 +++++++++++++++-------------- R/collaboration_area.R | 2 R/create_bar_asis.R | 5 R/create_bubble.R | 2 R/create_itsa.R | 5 R/create_line_asis.R | 5 R/create_period_scatter.R | 2 R/create_radar.R |only R/create_scatter.R | 2 R/create_survival.R |only R/create_survival_prep.R |only R/extract_hr.R | 35 ++++ R/hr_trend.R | 2 R/hrvar_count.R | 2 R/hrvar_trend.R | 2 R/identify_holidayweeks.R | 2 R/identify_inactiveweeks.R | 2 R/identify_nkw.R | 2 R/identify_outlier.R | 2 R/identify_retention.R |only R/identify_tenure.R | 2 R/keymetrics_scan_asis.R | 4 R/supporting_functions.R | 15 ++ R/track_hr_change.R | 2 R/utils-radar-survival.R |only R/validation_report.R | 2 README.md | 17 ++ man/afterhours_dist.Rd | 8 - man/afterhours_fizz.Rd | 8 - man/afterhours_line.Rd | 8 - man/afterhours_rank.Rd | 8 - man/afterhours_summary.Rd | 8 - man/afterhours_trend.Rd | 8 - man/collaboration_area.Rd | 4 man/collaboration_dist.Rd | 8 - man/collaboration_fizz.Rd | 8 - man/collaboration_line.Rd | 8 - man/collaboration_rank.Rd | 8 - man/collaboration_sum.Rd | 8 - man/collaboration_trend.Rd | 8 - man/create_bar.Rd | 10 + man/create_bar_asis.Rd | 9 + man/create_boxplot.Rd | 10 + man/create_bubble.Rd | 8 - man/create_density.Rd | 8 - man/create_dist.Rd | 10 + man/create_fizz.Rd | 10 + man/create_hist.Rd | 8 - man/create_inc.Rd | 4 man/create_itsa.Rd | 5 man/create_line.Rd | 10 + man/create_line_asis.Rd | 9 + man/create_period_scatter.Rd | 8 - man/create_radar.Rd |only man/create_radar_calc.Rd |only man/create_radar_viz.Rd |only man/create_rank.Rd | 10 + man/create_rank_combine.Rd | 6 man/create_rogers.Rd | 2 man/create_sankey.Rd | 4 man/create_scatter.Rd | 8 - man/create_stacked.Rd | 10 + man/create_survival.Rd |only man/create_survival_calc.Rd |only man/create_survival_prep.Rd |only man/create_survival_viz.Rd |only man/create_tracking.Rd | 4 man/create_trend.Rd | 10 + man/email_dist.Rd | 8 - man/email_fizz.Rd | 8 - man/email_line.Rd | 8 - man/email_rank.Rd | 8 - man/email_summary.Rd | 8 - man/email_trend.Rd | 8 - man/external_dist.Rd | 8 - man/external_fizz.Rd | 8 - man/external_line.Rd | 8 - man/external_rank.Rd | 8 - man/external_sum.Rd | 8 - man/extract_hr.Rd | 4 man/hr_trend.Rd | 6 man/hrvar_count.Rd | 6 man/hrvar_trend.Rd | 6 man/identify_holidayweeks.Rd | 4 man/identify_inactiveweeks.Rd | 4 man/identify_nkw.Rd | 4 man/identify_outlier.Rd | 4 man/identify_retention.Rd |only man/identify_tenure.Rd | 4 man/keymetrics_scan.Rd | 8 - man/keymetrics_scan_asis.Rd | 4 man/meeting_dist.Rd | 8 - man/meeting_fizz.Rd | 8 - man/meeting_line.Rd | 8 - man/meeting_rank.Rd | 8 - man/meeting_summary.Rd | 8 - man/meeting_trend.Rd | 8 - man/one2one_dist.Rd | 8 - man/one2one_fizz.Rd | 8 - man/one2one_freq.Rd | 8 - man/one2one_line.Rd | 8 - man/one2one_rank.Rd | 8 - man/one2one_sum.Rd | 8 - man/one2one_trend.Rd | 8 - man/track_HR_change.Rd | 4 man/validation_report.Rd | 4 tests/testthat/test_create_radar.R |only tests/testthat/test_create_survival.R |only tests/testthat/test_create_survival_prep.R |only tests/testthat/test_extract_hr.R |only tests/testthat/test_identify_retention.R |only 114 files changed, 792 insertions(+), 281 deletions(-)
Title: Propensity Score Matching of Non-Binary Treatments
Description: Propensity score matching for non-binary treatments.
Author: Jason Bryer [aut, cre]
Maintainer: Jason Bryer <jason@bryer.org>
Diff between TriMatch versions 1.0.1 dated 2025-12-08 and 1.0.2 dated 2026-04-28
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ build/vignette.rds |binary inst/doc/TriMatch.Rmd | 2 +- inst/doc/TriMatch.pdf |binary vignettes/TriMatch.Rmd | 2 +- vignettes/references.bib | 4 ++-- 8 files changed, 21 insertions(+), 15 deletions(-)
Title: Read and Write WAV Files
Description: Efficiently read and write Waveform (WAV) audio files <https://en.wikipedia.org/wiki/WAV>.
Support for unsigned 8 bit Pulse-code modulation (PCM), signed 12, 16, 24 and 32 bit
PCM and other encodings.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [aut, cph],
Posit, PBC [cph],
David Reid [cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between wav versions 0.1.1 dated 2025-11-27 and 0.2.0 dated 2026-04-28
DESCRIPTION | 16 MD5 | 6 NEWS.md | 5 src/dr_libs/dr_wav.h | 1778 +++++++++++++++++++++++++++++++++++---------------- 4 files changed, 1252 insertions(+), 553 deletions(-)
Title: A Versatile Cutting Tool
Description: A tool for cutting data into intervals. Allows singleton intervals.
Always includes the whole range of data by default. Flexible labelling.
Convenience functions for cutting by quantiles etc. Handles dates, times, units
and other vectors.
Author: David Hugh-Jones [aut, cre],
Daniel Possenriede [ctb]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between santoku versions 1.1.0 dated 2025-09-11 and 1.2.0 dated 2026-04-28
DESCRIPTION | 11 - MD5 | 94 +++++----- NAMESPACE | 3 NEWS.md | 10 + R/breaks-by-width.R | 2 R/breaks-impl.R | 8 R/chop-isolates.R | 2 R/chop.R | 31 +-- R/labels-datetime.R |only R/labels-glue.R | 12 - R/labels-impl.R | 53 +++++- R/labels-single.R | 18 -- R/labels.R | 61 +++--- build/vignette.rds |binary inst/doc/santoku.R | 2 inst/doc/santoku.Rmd | 6 inst/doc/santoku.html | 31 +-- man/brk_width-for-datetime.Rd | 2 man/chop.Rd | 19 +- man/chop_equally.Rd | 4 man/chop_evenly.Rd | 4 man/chop_fn.Rd | 4 man/chop_mean_sd.Rd | 4 man/chop_n.Rd | 4 man/chop_pretty.Rd | 4 man/chop_proportions.Rd | 4 man/chop_quantiles.Rd | 4 man/chop_spikes.Rd | 4 man/chop_width.Rd | 4 man/dissect.Rd | 2 man/fillet.Rd | 4 man/lbl_dash.Rd | 11 - man/lbl_datetime.Rd |only man/lbl_discrete.Rd | 8 man/lbl_endpoints.Rd | 11 - man/lbl_glue.Rd | 11 - man/lbl_intervals.Rd | 11 - man/lbl_manual.Rd | 5 man/lbl_midpoints.Rd | 11 - man/lbl_seq.Rd | 1 tests/testthat/test-Date-DateTime.R | 111 ++++++------ tests/testthat/test-breaks.R | 43 ++-- tests/testthat/test-categorize.R | 8 tests/testthat/test-chop.R | 188 ++++++++++----------- tests/testthat/test-labels.R | 308 ++++++++++++++++++++++------------- tests/testthat/test-nonstandard.R | 17 + tests/testthat/test-tab.R | 19 +- tests/testthat/test-zzz-systematic.R | 19 +- vignettes/santoku.Rmd | 6 49 files changed, 695 insertions(+), 504 deletions(-)
Title: Post-Estimation Utilities for 'lavaan' Fitted Models
Description: Companion toolbox for structural equation models fitted with 'lavaan'. Provides post-estimation diagnostics and graphics that operate directly on a fitted object using its estimates and covariance, and refits auxiliary models when needed. The package relies on 'lavaan' (Rosseel, 2012) <doi:10.18637/jss.v048.i02>.
Author: Giuseppe Corbelli [aut, cre]
Maintainer: Giuseppe Corbelli <giuseppe.corbelli@uninettunouniversity.net>
Diff between lavinteract versions 0.4.6 dated 2026-02-12 and 0.5.1 dated 2026-04-28
DESCRIPTION | 8 MD5 | 36 ++- NAMESPACE | 27 ++ NEWS.md | 13 + R/lav_cv.R | 70 ++++--- R/lav_deltaR2.R |only R/lav_fdr.R | 28 ++- R/lav_jn.R |only R/lav_localfit.R |only R/lav_slopes.R | 442 +++++++++++++++++++++++++++++++++++++----------- R/lav_vif.R | 294 +++++++++++++++++++++++++------ R/lavinteract-package.R | 25 +- inst/WORDLIST | 30 +++ man/figures/logo.png |binary man/lav_cv.Rd | 61 +++--- man/lav_deltaR2.Rd |only man/lav_fdr.Rd | 14 + man/lav_jn.Rd |only man/lav_localfit.Rd |only man/lav_slopes.Rd | 87 ++++++--- man/lav_vif.Rd | 38 ++-- man/lavinteract.Rd | 19 +- 22 files changed, 908 insertions(+), 284 deletions(-)
Title: Declare and Diagnose Research Designs
Description: Researchers can characterize and learn about the properties of
research designs before implementation using `DeclareDesign`. Ex ante
declaration and diagnosis of designs can help researchers clarify the
strengths and limitations of their designs and to improve their
properties, and can help readers evaluate a research strategy prior
to implementation and without access to results. It can also make it
easier for designs to be shared, replicated, and critiqued.
Author: Graeme Blair [aut] ,
Jasper Cooper [aut] ,
Alexander Coppock [aut, cre] ,
Macartan Humphreys [aut] ,
Neal Fultz [aut]
Maintainer: Alexander Coppock <acoppock@gmail.com>
Diff between DeclareDesign versions 1.1.0 dated 2025-10-15 and 1.1.1 dated 2026-04-28
DeclareDesign-1.1.0/DeclareDesign/build |only DeclareDesign-1.1.0/DeclareDesign/inst/doc |only DeclareDesign-1.1.0/DeclareDesign/vignettes |only DeclareDesign-1.1.1/DeclareDesign/DESCRIPTION | 16 +- DeclareDesign-1.1.1/DeclareDesign/MD5 | 59 ++++------ DeclareDesign-1.1.1/DeclareDesign/NAMESPACE | 1 DeclareDesign-1.1.1/DeclareDesign/NEWS.md | 18 ++- DeclareDesign-1.1.1/DeclareDesign/R/aaa.R | 4 DeclareDesign-1.1.1/DeclareDesign/R/construct_design.R | 29 ++-- DeclareDesign-1.1.1/DeclareDesign/R/declare_potential_outcomes.R | 4 DeclareDesign-1.1.1/DeclareDesign/R/design_print_summary.R | 10 - DeclareDesign-1.1.1/DeclareDesign/R/object_handlers.R | 13 +- DeclareDesign-1.1.1/DeclareDesign/R/select_diagnosands.R | 3 DeclareDesign-1.1.1/DeclareDesign/man/DeclareDesign-deprecated.Rd | 6 - DeclareDesign-1.1.1/DeclareDesign/man/DeclareDesign.Rd | 38 +++--- DeclareDesign-1.1.1/DeclareDesign/man/declare_design.Rd | 4 DeclareDesign-1.1.1/DeclareDesign/man/declare_estimator.Rd | 2 DeclareDesign-1.1.1/DeclareDesign/man/declare_inquiry.Rd | 14 +- DeclareDesign-1.1.1/DeclareDesign/man/declare_measurement.Rd | 4 DeclareDesign-1.1.1/DeclareDesign/man/declare_model.Rd | 8 - DeclareDesign-1.1.1/DeclareDesign/man/declare_reveal.Rd | 12 +- DeclareDesign-1.1.1/DeclareDesign/man/declare_test.Rd | 2 DeclareDesign-1.1.1/DeclareDesign/man/expand_design.Rd | 2 DeclareDesign-1.1.1/DeclareDesign/man/find_all_objects.Rd | 10 - DeclareDesign-1.1.1/DeclareDesign/man/modify_edit.Rd | 4 DeclareDesign-1.1.1/DeclareDesign/man/redesign.Rd | 2 DeclareDesign-1.1.1/DeclareDesign/man/select_diagnosands.Rd | 4 DeclareDesign-1.1.1/DeclareDesign/man/simulate_design.Rd | 2 DeclareDesign-1.1.1/DeclareDesign/man/tidy.diagnosis.Rd | 2 DeclareDesign-1.1.1/DeclareDesign/tests/testthat.R | 12 -- DeclareDesign-1.1.1/DeclareDesign/tests/testthat/test-environments.R | 1 31 files changed, 148 insertions(+), 138 deletions(-)
Title: Graphical Web-Framework for Data Manipulation and Visualization
Description: A framework for data manipulation and visualization using a
web-based point and click user interface where analysis pipelines are decomposed into re-usable and parameterizable blocks.
Author: Nicolas Bennett [aut, cre],
David Granjon [aut],
Christoph Sax [aut],
Bristol Myers Squibb [fnd]
Maintainer: Nicolas Bennett <nicolas@cynkra.com>
Diff between blockr.core versions 0.1.1 dated 2025-12-06 and 0.1.2 dated 2026-04-28
blockr.core-0.1.1/blockr.core/inst/assets/css |only blockr.core-0.1.1/blockr.core/inst/assets/js/copyToClipboard.js |only blockr.core-0.1.2/blockr.core/DESCRIPTION | 53 blockr.core-0.1.2/blockr.core/MD5 | 163 blockr.core-0.1.2/blockr.core/NAMESPACE | 19 blockr.core-0.1.2/blockr.core/NEWS.md | 16 blockr.core-0.1.2/blockr.core/R/block-class.R | 139 blockr.core-0.1.2/blockr.core/R/block-eval.R |only blockr.core-0.1.2/blockr.core/R/block-registry.R | 93 blockr.core-0.1.2/blockr.core/R/block-server.R | 246 blockr.core-0.1.2/blockr.core/R/blocks-class.R | 2 blockr.core-0.1.2/blockr.core/R/board-class.R | 17 blockr.core-0.1.2/blockr.core/R/board-plugins.R | 2 blockr.core-0.1.2/blockr.core/R/board-server.R | 99 blockr.core-0.1.2/blockr.core/R/board-ui.R | 35 blockr.core-0.1.2/blockr.core/R/data-dataset.R | 20 blockr.core-0.1.2/blockr.core/R/data-static.R | 3 blockr.core-0.1.2/blockr.core/R/links-class.R | 2 blockr.core-0.1.2/blockr.core/R/parser-csv.R | 5 blockr.core-0.1.2/blockr.core/R/plot-scatter.R | 10 blockr.core-0.1.2/blockr.core/R/plugin-code.R | 124 blockr.core-0.1.2/blockr.core/R/plugin-control.R |only blockr.core-0.1.2/blockr.core/R/plugin-links.R | 19 blockr.core-0.1.2/blockr.core/R/plugin-serdes.R | 26 blockr.core-0.1.2/blockr.core/R/plugin-stacks.R | 17 blockr.core-0.1.2/blockr.core/R/stacks-class.R | 2 blockr.core-0.1.2/blockr.core/R/text-glue.R | 17 blockr.core-0.1.2/blockr.core/R/transform-fixed.R | 2 blockr.core-0.1.2/blockr.core/R/transform-head.R | 5 blockr.core-0.1.2/blockr.core/R/transform-merge.R | 6 blockr.core-0.1.2/blockr.core/R/transform-rbind.R | 3 blockr.core-0.1.2/blockr.core/R/transform-subset.R | 77 blockr.core-0.1.2/blockr.core/R/utils-cnd.R | 21 blockr.core-0.1.2/blockr.core/R/utils-code.R | 35 blockr.core-0.1.2/blockr.core/R/utils-expr.R |only blockr.core-0.1.2/blockr.core/R/utils-misc.R | 51 blockr.core-0.1.2/blockr.core/R/utils-pkg.R | 7 blockr.core-0.1.2/blockr.core/R/utils-serdes.R | 7 blockr.core-0.1.2/blockr.core/R/utils-serve.R | 90 blockr.core-0.1.2/blockr.core/R/utils-shiny.R | 19 blockr.core-0.1.2/blockr.core/R/utils-tests.R | 22 blockr.core-0.1.2/blockr.core/build/vignette.rds |binary blockr.core-0.1.2/blockr.core/inst/doc/blocks-registry.R | 27 blockr.core-0.1.2/blockr.core/inst/doc/blocks-registry.html | 2531 ------- blockr.core-0.1.2/blockr.core/inst/doc/blocks-registry.qmd | 31 blockr.core-0.1.2/blockr.core/inst/doc/create-block.R | 35 blockr.core-0.1.2/blockr.core/inst/doc/create-block.html | 2536 ------- blockr.core-0.1.2/blockr.core/inst/doc/create-block.qmd | 41 blockr.core-0.1.2/blockr.core/inst/doc/extend-blockr.R | 199 blockr.core-0.1.2/blockr.core/inst/doc/extend-blockr.html | 3204 ---------- blockr.core-0.1.2/blockr.core/inst/doc/extend-blockr.qmd | 309 blockr.core-0.1.2/blockr.core/inst/doc/get-started.R | 26 blockr.core-0.1.2/blockr.core/inst/doc/get-started.html | 2514 ------- blockr.core-0.1.2/blockr.core/inst/doc/get-started.qmd | 28 blockr.core-0.1.2/blockr.core/inst/doc/testing-blocks.html | 2 blockr.core-0.1.2/blockr.core/inst/doc/testing-blocks.qmd | 2 blockr.core-0.1.2/blockr.core/inst/examples/board/ctrl |only blockr.core-0.1.2/blockr.core/man/bbquote.Rd |only blockr.core-0.1.2/blockr.core/man/block_name.Rd | 3 blockr.core-0.1.2/blockr.core/man/block_server.Rd | 43 blockr.core-0.1.2/blockr.core/man/block_ui.Rd | 4 blockr.core-0.1.2/blockr.core/man/board_blocks.Rd | 3 blockr.core-0.1.2/blockr.core/man/ctrl_block.Rd |only blockr.core-0.1.2/blockr.core/man/destroy_module.Rd |only blockr.core-0.1.2/blockr.core/man/include_mermaid.Rd |only blockr.core-0.1.2/blockr.core/man/new_block.Rd | 12 blockr.core-0.1.2/blockr.core/man/preserve_board.Rd | 5 blockr.core-0.1.2/blockr.core/man/register_block.Rd | 9 blockr.core-0.1.2/blockr.core/man/serve.Rd | 11 blockr.core-0.1.2/blockr.core/man/testing.Rd | 23 blockr.core-0.1.2/blockr.core/tests/testthat/test-block-class.R | 73 blockr.core-0.1.2/blockr.core/tests/testthat/test-block-registry.R | 33 blockr.core-0.1.2/blockr.core/tests/testthat/test-block-server.R | 23 blockr.core-0.1.2/blockr.core/tests/testthat/test-block-ui.R | 3 blockr.core-0.1.2/blockr.core/tests/testthat/test-board-class.R | 11 blockr.core-0.1.2/blockr.core/tests/testthat/test-eval-env.R |only blockr.core-0.1.2/blockr.core/tests/testthat/test-plugin-control.R |only blockr.core-0.1.2/blockr.core/tests/testthat/test-plugin-serdes.R | 91 blockr.core-0.1.2/blockr.core/tests/testthat/test-utils-code.R |only blockr.core-0.1.2/blockr.core/tests/testthat/test-utils-expr.R |only blockr.core-0.1.2/blockr.core/tests/testthat/test-utils-serdes.R | 1 blockr.core-0.1.2/blockr.core/tests/testthat/test-utils-serve.R | 96 blockr.core-0.1.2/blockr.core/vignettes/_metadata.yml |only blockr.core-0.1.2/blockr.core/vignettes/blocks-registry.qmd | 31 blockr.core-0.1.2/blockr.core/vignettes/create-block.qmd | 41 blockr.core-0.1.2/blockr.core/vignettes/extend-blockr.qmd | 309 blockr.core-0.1.2/blockr.core/vignettes/get-started.qmd | 28 blockr.core-0.1.2/blockr.core/vignettes/mermaid |only blockr.core-0.1.2/blockr.core/vignettes/testing-blocks.qmd | 2 89 files changed, 1917 insertions(+), 11897 deletions(-)
Title: Process Data from Wearable Light Loggers and Optical Radiation
Dosimeters
Description: Import, processing, validation, and visualization of personal light exposure measurement data from wearable devices. The package implements features such as the import of data and metadata files, conversion of common file formats, validation of light logging data, verification of crucial metadata, calculation of common parameters, and semi-automated analysis and visualization.
Author: Johannes Zauner [aut, cre] ,
Manuel Spitschan [aut] ,
Steffen Hartmeyer [aut] ,
European Partnership on Metrology [fnd]
has received funding from the European Partnership on Metrology,
co-financed by the European Union's Horizon Europe Research and
[...truncated...]
Maintainer: Johannes Zauner <johannes.zauner@tum.de>
Diff between LightLogR versions 0.10.0 dated 2025-11-28 and 0.10.3 dated 2026-04-28
LightLogR-0.10.0/LightLogR/DESCRIPTION |only LightLogR-0.10.0/LightLogR/README.md |only LightLogR-0.10.0/LightLogR/build |only LightLogR-0.10.0/LightLogR/inst/extdata/cyepiamb_CW35_Log_1431_20230904081953614.txt.zip |only LightLogR-0.10.0/LightLogR/man |only LightLogR-0.10.3/LightLogR/MD5 | 42 +++++----- LightLogR-0.10.3/LightLogR/NEWS.md | 14 +++ LightLogR-0.10.3/LightLogR/R/add_states.R | 15 +++ LightLogR-0.10.3/LightLogR/R/extract_metric.R | 3 LightLogR-0.10.3/LightLogR/R/gg_state.R | 11 -- LightLogR-0.10.3/LightLogR/R/import_expressions.R | 2 LightLogR-0.10.3/LightLogR/R/mean_daily.R | 13 ++- LightLogR-0.10.3/LightLogR/inst/extdata/205_actlumus_Log_1020_20230904101707532.txt.zip |binary LightLogR-0.10.3/LightLogR/tests/testthat/test-extract_states.R | 4 14 files changed, 65 insertions(+), 39 deletions(-)
Title: Convert Various Meta-Analysis Heterogeneity Measures
Description: Published meta-analyses routinely present one of the
measures of heterogeneity introduced in Higgins and Thompson
(2002) <doi:10.1002/sim.1186>. For critiquing articles
it is often better to convert to another of
those measures. Some
conversions are provided here and confidence intervals are also
available.
Author: Michael Dewey [aut, cre]
Maintainer: Michael Dewey <lists@dewey.myzen.co.uk>
Diff between heterometa versions 0.4 dated 2026-01-15 and 0.5 dated 2026-04-28
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 2 +- NEWS | 5 +++++ R/higgins.R | 11 +++++++---- R/print.higgins.R | 31 +++++++++++++++++-------------- build/heterometa.pdf |binary build/partial.rdb |binary build/stage23.rdb |binary man/higgins.Rd | 11 +++++++++-- 10 files changed, 52 insertions(+), 34 deletions(-)
Title: Visualizing Interval-Valued Data Using 'ggplot2'
Description: Extends 'ggplot2' for visualizing interval-valued data with
scatter plots, histograms, index plots, boxplots, radar plots, PCA
displays, and correlation heatmaps. The package also converts
classical data tables into interval-valued data using clustering
algorithms or user-defined groupings.
Author: Bo-Syue Jiang [aut],
Han-Ming Wu [cre]
Maintainer: Han-Ming Wu <wuhm@g.nccu.edu.tw>
Diff between ggInterval versions 0.2.4 dated 2026-02-23 and 0.2.5 dated 2026-04-28
ggInterval-0.2.4/ggInterval/data/AbaloneIdt.rda |only ggInterval-0.2.4/ggInterval/data/BLOOD.rda |only ggInterval-0.2.4/ggInterval/man/AbaloneIdt.Rd |only ggInterval-0.2.4/ggInterval/man/BLOOD.Rd |only ggInterval-0.2.4/ggInterval/man/figures/README-CRplot.png |only ggInterval-0.2.4/ggInterval/man/figures/README-MMplot.png |only ggInterval-0.2.4/ggInterval/man/figures/README-boxplot.png |only ggInterval-0.2.4/ggInterval/man/figures/README-hist.png |only ggInterval-0.2.4/ggInterval/man/figures/README-indexImage.png |only ggInterval-0.2.4/ggInterval/man/figures/README-indexplot.png |only ggInterval-0.2.4/ggInterval/man/figures/README-radarplot.png |only ggInterval-0.2.4/ggInterval/man/figures/README-scatterplot.png |only ggInterval-0.2.4/ggInterval/vignettes/ggInterval_Jiang&Wu.pdf |only ggInterval-0.2.5/ggInterval/DESCRIPTION | 22 ggInterval-0.2.5/ggInterval/MD5 | 126 ggInterval-0.2.5/ggInterval/NAMESPACE | 13 ggInterval-0.2.5/ggInterval/R/classic2sym.R | 25 ggInterval-0.2.5/ggInterval/R/data.R | 87 ggInterval-0.2.5/ggInterval/R/ggInterval_2Dhist.R | 345 - ggInterval-0.2.5/ggInterval/R/ggInterval_2DhistMatrix.R | 418 +- ggInterval-0.2.5/ggInterval/R/ggInterval_2Dhist_utils.R |only ggInterval-0.2.5/ggInterval/R/ggInterval_3Dscatterplot.R | 11 ggInterval-0.2.5/ggInterval/R/ggInterval_CRplot.R | 39 ggInterval-0.2.5/ggInterval/R/ggInterval_MMplot.R | 20 ggInterval-0.2.5/ggInterval/R/ggInterval_PCA.R | 72 ggInterval-0.2.5/ggInterval/R/ggInterval_boxplot.R | 215 - ggInterval-0.2.5/ggInterval/R/ggInterval_corrplot.R |only ggInterval-0.2.5/ggInterval/R/ggInterval_hist.R | 61 ggInterval-0.2.5/ggInterval/R/ggInterval_indexImage.R | 78 ggInterval-0.2.5/ggInterval/R/ggInterval_indexplot.R | 242 + ggInterval-0.2.5/ggInterval/R/ggInterval_radarplot.R | 158 ggInterval-0.2.5/ggInterval/R/ggInterval_scatterMatrix.R | 64 ggInterval-0.2.5/ggInterval/R/ggInterval_scatterplot.R | 216 - ggInterval-0.2.5/ggInterval/R/ggInterval_tsplot.R |only ggInterval-0.2.5/ggInterval/R/utilities.R | 185 - ggInterval-0.2.5/ggInterval/build/vignette.rds |binary ggInterval-0.2.5/ggInterval/data/abalone.i.rda |only ggInterval-0.2.5/ggInterval/data/blood.i.rda |only ggInterval-0.2.5/ggInterval/inst/CITATION |only ggInterval-0.2.5/ggInterval/inst/doc/ggInterval_Intro.R | 519 ++ ggInterval-0.2.5/ggInterval/inst/doc/ggInterval_Intro.Rmd | 814 ++-- ggInterval-0.2.5/ggInterval/inst/doc/ggInterval_Intro.html | 1850 +++++----- ggInterval-0.2.5/ggInterval/man/Cardiological.Rd | 56 ggInterval-0.2.5/ggInterval/man/Cardiological2.Rd | 53 ggInterval-0.2.5/ggInterval/man/RSDA2sym.Rd | 86 ggInterval-0.2.5/ggInterval/man/abalone.i.Rd |only ggInterval-0.2.5/ggInterval/man/blood.i.Rd |only ggInterval-0.2.5/ggInterval/man/classic2sym.Rd | 206 - ggInterval-0.2.5/ggInterval/man/cor.Rd | 125 ggInterval-0.2.5/ggInterval/man/cov.Rd | 127 ggInterval-0.2.5/ggInterval/man/facedata.Rd | 110 ggInterval-0.2.5/ggInterval/man/figures/README-facedata-CRplot.png |only ggInterval-0.2.5/ggInterval/man/figures/README-facedata-MMplot.png |only ggInterval-0.2.5/ggInterval/man/figures/README-facedata-boxplot.png |only ggInterval-0.2.5/ggInterval/man/figures/README-facedata-hist.png |only ggInterval-0.2.5/ggInterval/man/figures/README-facedata-indexImage.png |only ggInterval-0.2.5/ggInterval/man/figures/README-facedata-indexplot.png |only ggInterval-0.2.5/ggInterval/man/figures/README-facedata-radarplot.png |only ggInterval-0.2.5/ggInterval/man/figures/README-facedata-scatterplot.png |only ggInterval-0.2.5/ggInterval/man/ggInterval_2Dhist.Rd | 119 ggInterval-0.2.5/ggInterval/man/ggInterval_2DhistMatrix.Rd | 127 ggInterval-0.2.5/ggInterval/man/ggInterval_3Dscatterplot.Rd | 73 ggInterval-0.2.5/ggInterval/man/ggInterval_CRplot.Rd | 76 ggInterval-0.2.5/ggInterval/man/ggInterval_MMplot.Rd | 86 ggInterval-0.2.5/ggInterval/man/ggInterval_PCA.Rd | 121 ggInterval-0.2.5/ggInterval/man/ggInterval_boxplot.Rd | 86 ggInterval-0.2.5/ggInterval/man/ggInterval_corrplot.Rd |only ggInterval-0.2.5/ggInterval/man/ggInterval_hist.Rd | 112 ggInterval-0.2.5/ggInterval/man/ggInterval_indexImage.Rd | 108 ggInterval-0.2.5/ggInterval/man/ggInterval_indexplot.Rd | 100 ggInterval-0.2.5/ggInterval/man/ggInterval_lineplot.Rd |only ggInterval-0.2.5/ggInterval/man/ggInterval_radarplot.Rd | 198 - ggInterval-0.2.5/ggInterval/man/ggInterval_scatterMatrix.Rd | 99 ggInterval-0.2.5/ggInterval/man/ggInterval_scatterplot.Rd | 123 ggInterval-0.2.5/ggInterval/man/mushroom.Rd | 57 ggInterval-0.2.5/ggInterval/man/oils.Rd | 58 ggInterval-0.2.5/ggInterval/man/sd.Rd |only ggInterval-0.2.5/ggInterval/tests |only ggInterval-0.2.5/ggInterval/vignettes/data.csv |only ggInterval-0.2.5/ggInterval/vignettes/ggInterval_Intro.Rmd | 814 ++-- 80 files changed, 5042 insertions(+), 3658 deletions(-)
Title: Descriptive Statistics
Description: Weighted frequency and contingency tables of
categorical variables and of the comparison of the mean
value of a numerical variable by the levels of a factor,
and methods to produce xtable objects of the tables and to
plot them. There are also functions to facilitate
character encoding conversion of objects, to quickly
convert fixed-width files into CSV ones, and to export a
data.frame to a text file with the necessary R and SPSS
codes to reread the data.
Author: Jakson Aquino [cre] ,
Dirk Enzmann [aut],
Marc Schwartz [aut],
Nitin Jain [aut],
Stefan Kraft [aut]
Maintainer: Jakson Aquino <jalvesaq@gmail.com>
Diff between descr versions 1.1.8 dated 2023-11-27 and 1.1.9 dated 2026-04-28
DESCRIPTION | 42 +++++++++++++++++++++++++++--------------- MD5 | 4 ++-- NEWS | 4 ++++ 3 files changed, 33 insertions(+), 17 deletions(-)
Title: Enable the Use of 'metacore' to Help Create and Check Dataset
Description: Uses the metadata information stored in 'metacore' objects to
check and build metadata associated columns.
Author: Liam Hobby [aut, cre],
Christina Fillmore [aut] ,
Bill Denney [aut],
Mike Stackhouse [aut] ,
Jana Stoilova [aut],
Tamara Senior [aut],
GlaxoSmithKline LLC [cph, fnd],
F. Hoffmann-La Roche AG [cph, fnd],
Atorus Research LLC [cph, fnd]
Maintainer: Liam Hobby <liam.f.hobby@gsk.com>
Diff between metatools versions 0.2.0 dated 2025-07-16 and 0.3.0 dated 2026-04-28
DESCRIPTION | 8 MD5 | 62 +-- NAMESPACE | 2 NEWS.md | 126 +++++- R/build.R | 514 ++++++++++++++------------ R/checks.R | 511 +++++++++++++++----------- R/codelists.R | 304 ++++++++------- R/labels.R | 168 ++++---- R/metatools-package.R | 2 R/sort.R | 73 +-- R/supp.R | 472 ++++++++++++++---------- R/utils.R | 37 + inst/WORDLIST | 2 man/add_labels.Rd | 8 man/add_variables.Rd | 2 man/build_from_derived.Rd | 10 man/build_qnam.Rd | 17 man/check_ct_col.Rd | 26 + man/check_ct_data.Rd | 22 - man/check_variables.Rd | 2 man/combine_supp.Rd | 2 man/create_var_from_codelist.Rd | 32 - man/drop_unspec_vars.Rd | 17 man/set_variable_labels.Rd | 20 - tests/spelling.R | 9 tests/testthat/test-build.R | 252 ++++++++----- tests/testthat/test-checks.R | 259 +++++++------ tests/testthat/test-codelist.R | 270 ++++++++------ tests/testthat/test-labels.R | 264 ++++++++----- tests/testthat/test-sort.R | 70 ++- tests/testthat/test-supp.R | 762 +++++++++++++++++++++++++++++----------- tests/testthat/test-utils.R | 8 32 files changed, 2698 insertions(+), 1635 deletions(-)
Title: Phase-Function Based Estimation and Inference for Linear
Errors-in-Variables (EIV) Models
Description: Estimation and inference for coefficients of linear EIV models with symmetric measurement errors.
The measurement errors can be homoscedastic or heteroscedastic, for the latter, replication for at least some observations needs to be available. The estimation method and asymptotic inference are
based on a generalised method of moments framework, where the estimating equations are formed from (1) minimising the distance between the empirical phase function (normalised characteristic function) of the response and that of the linear combination of all the covariates at the estimates,
and (2) minimising a corrected least-square discrepancy function. Specifically, for a linear EIV model with p error-prone and q error-free covariates, if replicates are available, the GMM approach is based on a 2(p+q) estimating equations if some replicates are available and based on p+2q estimating equations if no replicate is available.
The details of the method are described in Nghiem and Potgieter (2020) & [...truncated...]
Author: Chang Liu [aut, cre],
Linh Nghiem [aut]
Maintainer: Chang Liu <leo12345liu@gmail.com>
Diff between PhaseGMM versions 0.1.0 dated 2026-04-02 and 0.1.1 dated 2026-04-28
PhaseGMM-0.1.0/PhaseGMM/man/coef.Rd |only PhaseGMM-0.1.0/PhaseGMM/man/confint.Rd |only PhaseGMM-0.1.0/PhaseGMM/man/residuals.Rd |only PhaseGMM-0.1.0/PhaseGMM/man/summary.Rd |only PhaseGMM-0.1.0/PhaseGMM/man/vcov.Rd |only PhaseGMM-0.1.1/PhaseGMM/DESCRIPTION | 6 +-- PhaseGMM-0.1.1/PhaseGMM/MD5 | 20 +++++----- PhaseGMM-0.1.1/PhaseGMM/NAMESPACE | 10 ++--- PhaseGMM-0.1.1/PhaseGMM/R/Wrapper_EIV_helper.R | 22 ++++++++--- PhaseGMM-0.1.1/PhaseGMM/R/Wrapper_output_functions.R | 16 +++++--- PhaseGMM-0.1.1/PhaseGMM/R/computing_GMM_estimator.R | 38 +++++++++++++++---- PhaseGMM-0.1.1/PhaseGMM/man/coef.eiv_mlr.Rd |only PhaseGMM-0.1.1/PhaseGMM/man/confint.eiv_mlr.Rd |only PhaseGMM-0.1.1/PhaseGMM/man/residuals.eiv_mlr.Rd |only PhaseGMM-0.1.1/PhaseGMM/man/summary.eiv_mlr.Rd |only PhaseGMM-0.1.1/PhaseGMM/man/vcov.eiv_mlr.Rd |only 16 files changed, 75 insertions(+), 37 deletions(-)
Title: Likelihood-Free Parameter Estimation using Neural Networks
Description: An 'R' interface to the 'Julia' package 'NeuralEstimators.jl'. The package facilitates the user-friendly development of neural Bayes estimators, which are neural networks that map data to a point summary of the posterior distribution (Sainsbury-Dale et al., 2024, <doi:10.1080/00031305.2023.2249522>). These estimators are likelihood-free and amortised, in the sense that, once the neural networks are trained on simulated data, inference from observed data can be made in a fraction of the time required by conventional approaches. The package also supports amortised Bayesian or frequentist inference using neural networks that approximate the posterior or likelihood-to-evidence ratio (Zammit-Mangion et al., 2025, Sec. 3.2, 5.2, <doi:10.48550/arXiv.2404.12484>). The package accommodates any model for which simulation is feasible by allowing users to define models implicitly through simulated data.
Author: Matthew Sainsbury-Dale [aut, cre]
Maintainer: Matthew Sainsbury-Dale <msainsburydale@gmail.com>
Diff between NeuralEstimators versions 0.2.0 dated 2025-03-02 and 0.2.1 dated 2026-04-28
NeuralEstimators-0.2.0/NeuralEstimators/man/posteriormode.Rd |only NeuralEstimators-0.2.1/NeuralEstimators/DESCRIPTION | 6 NeuralEstimators-0.2.1/NeuralEstimators/MD5 | 32 NeuralEstimators-0.2.1/NeuralEstimators/NAMESPACE | 2 NeuralEstimators-0.2.1/NeuralEstimators/R/core.R | 279 ++--- NeuralEstimators-0.2.1/NeuralEstimators/R/missingdata.R | 4 NeuralEstimators-0.2.1/NeuralEstimators/R/plotting.R | 12 NeuralEstimators-0.2.1/NeuralEstimators/README.md | 4 NeuralEstimators-0.2.1/NeuralEstimators/inst/doc/NeuralEstimators.html | 503 ++-------- NeuralEstimators-0.2.1/NeuralEstimators/man/assess.Rd | 22 NeuralEstimators-0.2.1/NeuralEstimators/man/encodedata.Rd | 2 NeuralEstimators-0.2.1/NeuralEstimators/man/estimate.Rd | 8 NeuralEstimators-0.2.1/NeuralEstimators/man/logratio.Rd |only NeuralEstimators-0.2.1/NeuralEstimators/man/sampleposterior.Rd | 4 NeuralEstimators-0.2.1/NeuralEstimators/man/spatialgraph.Rd | 2 NeuralEstimators-0.2.1/NeuralEstimators/man/train.Rd | 26 NeuralEstimators-0.2.1/NeuralEstimators/tests/testthat/test-core.R | 46 NeuralEstimators-0.2.1/NeuralEstimators/tests/testthat/test-plotting.R | 9 18 files changed, 348 insertions(+), 613 deletions(-)
More information about NeuralEstimators at CRAN
Permanent link
Title: Biological Sequences Retrieval and Analysis
Description: Exploratory data analysis and data visualization
for biological sequence (DNA and protein) data. Seqinr includes
utilities for sequence data management under the ACNUC system
described in Gouy, M. et al. (1984) Nucleic Acids Res.
12:121-127 <doi:10.1093/nar/12.1Part1.121>.
Author: Delphine Charif [aut],
Olivier Clerc [ctb],
Carolin Frank [ctb],
Jean R. Lobry [aut, cph],
Anamaria Necsulea [ctb],
Leonor Palmeira [ctb],
Simon Penel [cre],
Guy Perriere [ctb]
Maintainer: Simon Penel <simon.penel@univ-lyon1.fr>
Diff between seqinr versions 4.2-36 dated 2023-12-08 and 4.2-44 dated 2026-04-28
DESCRIPTION | 9 ++++----- MD5 | 30 +++++++++++++++--------------- R/consensus.R | 24 ++++++++++++++++-------- R/getTrans.R | 32 ++++++++++++++++++++------------ R/read.alignment.R | 22 +++++++++++++++++----- R/translate.R | 6 ++++-- build/partial.rdb |binary man/EXP.Rd | 4 ---- man/amb.Rd | 2 +- man/bma.Rd | 2 +- man/consensus.Rd | 36 ++++++++++++++++++++++++------------ man/getTrans.Rd | 19 +++++++++++-------- man/lseqinr.Rd | 6 +++--- man/oriloc.Rd | 7 ------- man/read.alignment.Rd | 7 +++++-- man/translate.Rd | 7 ++++++- 16 files changed, 127 insertions(+), 86 deletions(-)
Title: Random Hazard Forests
Description: Random Hazard Forests (RHF) extend Random Survival
Forests (RSF) by directly estimating the hazard function and by
accommodating time-dependent covariates through counting-process
style inputs. The package fits tree ensembles for dynamic survival
prediction, returning hazard, cumulative hazard, integrated hazard,
and related performance summaries for training and test data. The
methods build on Random Survival Forests described by Ishwaran et
al. (2008) <doi:10.1214/08-AOAS169> and on nonparametric hazard
modeling with time-dependent covariates described by Lee et
al. (2021) <doi:10.1214/20-AOS2028>.
Author: Hemant Ishwaran [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestRHF versions 1.0.0 dated 2026-04-23 and 1.0.1 dated 2026-04-28
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS.md | 8 ++++++++ R/predict.rhf.workhorse.R | 8 ++++---- R/rhf.news.R | 2 +- R/rhf.workhorse.R | 2 +- R/utilities_additional.R | 1 - R/utilities_importance_methods.R | 6 ------ R/zzz.R | 2 +- inst/copyright | 2 -- src/Makevars | 5 +---- src/Makevars.win | 6 +++--- src/R_init_randomForestRHF.c | 22 +++++++++++----------- src/entry.c | 2 +- src/server.h | 3 +++ src/stackSubjectInfo.c | 2 +- 16 files changed, 54 insertions(+), 55 deletions(-)
More information about randomForestRHF at CRAN
Permanent link
Title: High-Level Plotting Built Upon 'ggplot2' and Other Plotting
Packages
Description: Provides high-level API and a wide range of options to create stunning, publication-quality plots effortlessly.
It is built upon 'ggplot2' and other plotting packages, and is designed to be easy to use and to work seamlessly with 'ggplot2' objects.
It is particularly useful for creating complex plots with multiple layers, facets, and annotations.
It also provides a set of functions to create plots for specific types of data, such as Venn diagrams, alluvial diagrams, and phylogenetic trees.
The package is designed to be flexible and customizable, and to work well with the 'ggplot2' ecosystem.
The API can be found at <https://pwwang.github.io/plotthis/reference/index.html>.
Author: Panwen Wang [aut, cre]
Maintainer: Panwen Wang <pwwang@pwwang.com>
Diff between plotthis versions 0.11.1 dated 2026-03-15 and 0.12.0 dated 2026-04-28
DESCRIPTION | 6 MD5 | 40 R/heatmap.R | 1341 +++++++++++++++++++++++++++------ man/Heatmap.Rd | 242 ++++- man/HeatmapAtomic.Rd | 185 +++- tests/testthat/Rplots.pdf |only tests/testthat/test-areaplot.R |only tests/testthat/test-barplot.R |only tests/testthat/test-boxviolinplot.R |only tests/testthat/test-chordplot.R |only tests/testthat/test-clustreeplot.R |only tests/testthat/test-corplot.R |only tests/testthat/test-densityhistoplot.R |only tests/testthat/test-dimplot.R |only tests/testthat/test-dotplot.R |only tests/testthat/test-enrich.R |only tests/testthat/test-gsea.R |only tests/testthat/test-heatmap.R |only tests/testthat/test-jitterplot.R |only tests/testthat/test-lineplot.R |only tests/testthat/test-manhattanplot.R |only tests/testthat/test-network.R |only tests/testthat/test-piechart.R |only tests/testthat/test-qqplot.R |only tests/testthat/test-radarplot.R |only tests/testthat/test-rarefactionplot.R |only tests/testthat/test-roccurve.R |only tests/testthat/test-sankeyplot.R |only tests/testthat/test-scatterplot.R |only tests/testthat/test-theming-extra.R |only tests/testthat/test-trendplot.R |only tests/testthat/test-upsetplot.R |only tests/testthat/test-utils-extra.R |only tests/testthat/test-velocityplot.R |only tests/testthat/test-venndiagram.R |only tests/testthat/test-volcanoplot.R |only tests/testthat/test-wordcloudplot.R |only 37 files changed, 1475 insertions(+), 339 deletions(-)
Title: Higher Level 'API' for 'torch'
Description: A high level interface for 'torch' providing utilities to reduce the
the amount of code needed for common tasks, abstract away torch details and
make the same code work on both the 'CPU' and 'GPU'. It's flexible enough to
support expressing a large range of models. It's heavily inspired by 'fastai' by
Howard et al. (2020) <doi:10.48550/arXiv.2002.04688>, 'Keras' by Chollet et al. (2015) and
'PyTorch Lightning' by Falcon et al. (2019) <doi:10.5281/zenodo.3828935>.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [aut, cph],
Christophe Regouby [ctb],
RStudio [cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between luz versions 0.5.1 dated 2025-10-30 and 0.5.2 dated 2026-04-28
DESCRIPTION | 16 +++++++++------- MD5 | 8 ++++---- NEWS.md | 7 +++++++ build/vignette.rds |binary man/evaluate.Rd | 8 ++++++++ 5 files changed, 28 insertions(+), 11 deletions(-)
Title: Delineating Temporal Dataset Shifts in Electronic Health Records
Description: Functions to delineate temporal dataset shifts in Electronic Health
Records through the projection and visualization of dissimilarities
among data temporal batches. This is done through the estimation of
data statistical distributions over time and their projection in
non-parametric statistical manifolds, uncovering the patterns of the
data latent temporal variability. 'EHRtemporalVariability' is
particularly suitable for multi-modal data and categorical variables
with a high number of values, common features of biomedical data where
traditional statistical process control or time-series methods may not
be appropriate. 'EHRtemporalVariability' allows you to explore and
identify dataset shifts through visual analytics formats such as
Data Temporal heatmaps and Information Geometric Temporal (IGT) plots.
An additional 'EHRtemporalVariability' Shiny app can be used to load
and explore the package results and even to allow the use of these
functions to those users non-experienced in R codi [...truncated...]
Author: Carlos Saez [aut, cre],
Alba Gutierrez-Sacristan [aut],
Isaac Kohane [aut],
Juan M Garcia-Gomez [aut],
Paul Avillach [aut],
Biomedical Data Science Lab, Universitat Politecnica de Valencia
[cph],
Department of Biomedical Informatics, Harvard Medical [...truncated...]
Maintainer: Carlos Saez <carsaesi@upv.es>
This is a re-admission after prior archival of version 1.2.1 dated 2024-01-26
Diff between EHRtemporalVariability versions 1.2.1 dated 2024-01-26 and 1.2.2 dated 2026-04-28
EHRtemporalVariability-1.2.1/EHRtemporalVariability/inst/extdata/icd9mappingFile.csv |only EHRtemporalVariability-1.2.1/EHRtemporalVariability/inst/extdata/nhdsSubset.csv |only EHRtemporalVariability-1.2.1/EHRtemporalVariability/vignettes/EHRtemporalVariability.md |only EHRtemporalVariability-1.2.1/EHRtemporalVariability/vignettes/biomed-central.csl |only EHRtemporalVariability-1.2.2/EHRtemporalVariability/DESCRIPTION | 12 EHRtemporalVariability-1.2.2/EHRtemporalVariability/MD5 | 43 EHRtemporalVariability-1.2.2/EHRtemporalVariability/NEWS.md | 5 EHRtemporalVariability-1.2.2/EHRtemporalVariability/R/allClasses.R | 6 EHRtemporalVariability-1.2.2/EHRtemporalVariability/R/estimateDataTemporalMap.R | 6 EHRtemporalVariability-1.2.2/EHRtemporalVariability/R/formatDate.R | 6 EHRtemporalVariability-1.2.2/EHRtemporalVariability/R/icd9toPheWAS.R | 12 EHRtemporalVariability-1.2.2/EHRtemporalVariability/README.md | 6 EHRtemporalVariability-1.2.2/EHRtemporalVariability/build/vignette.rds |binary EHRtemporalVariability-1.2.2/EHRtemporalVariability/inst/WORDLIST |only EHRtemporalVariability-1.2.2/EHRtemporalVariability/inst/doc/EHRtemporalVariability.R | 61 EHRtemporalVariability-1.2.2/EHRtemporalVariability/inst/doc/EHRtemporalVariability.Rmd | 85 EHRtemporalVariability-1.2.2/EHRtemporalVariability/inst/doc/EHRtemporalVariability.html | 1963 ++++------ EHRtemporalVariability-1.2.2/EHRtemporalVariability/inst/extdata/icd9mappingFile.csv.xz |only EHRtemporalVariability-1.2.2/EHRtemporalVariability/inst/extdata/nhdsSubset.csv.xz |only EHRtemporalVariability-1.2.2/EHRtemporalVariability/man/DataTemporalMap-class.Rd | 6 EHRtemporalVariability-1.2.2/EHRtemporalVariability/man/estimateDataTemporalMap-methods.Rd | 6 EHRtemporalVariability-1.2.2/EHRtemporalVariability/man/formatDate.Rd | 6 EHRtemporalVariability-1.2.2/EHRtemporalVariability/man/icd9toPheWAS.Rd | 6 EHRtemporalVariability-1.2.2/EHRtemporalVariability/vignettes/EHRtemporalVariability.Rmd | 85 EHRtemporalVariability-1.2.2/EHRtemporalVariability/vignettes/EHRtemporalVariabilityHelp.pdf |binary EHRtemporalVariability-1.2.2/EHRtemporalVariability/vignettes/general-overview.bib | 4 26 files changed, 1112 insertions(+), 1206 deletions(-)
More information about EHRtemporalVariability at CRAN
Permanent link
Title: Identify Reference Periods in Brazil's PNADC Survey Data
Description: Identifies reference periods (months, fortnights, and weeks) in
Brazil's quarterly PNADC (Pesquisa Nacional por Amostra de Domicilios
Continua) survey data and computes calibrated weights for sub-quarterly
analysis. The core algorithm uses IBGE (Instituto Brasileiro de Geografia
e Estatistica) 'Parada Tecnica' (technical break) rules combined with
respondent birthdates to determine which temporal period each survey
observation refers to. Period identification follows a nested hierarchy
enforced by construction: fortnights require months, weeks require
fortnights. Achieves approximately 97% monthly determination rate with
the full series (2012-2025). Strict fortnight and week rates are
approximately 9% and 3% respectively, as they cannot leverage
cross-quarter panel aggregation. Experimental strategies (probabilistic
assignment and UPA (Primary Sampling Unit) aggregation) further improve
these determination rates. The package provides adaptive hierarchical
weight calibration (4/2/1 cell [...truncated...]
Author: Rogerio Barbosa [aut, cre] ,
Marcos Hecksher [aut]
Maintainer: Rogerio Barbosa <rogerio.barbosa@iesp.uerj.br>
Diff between PNADCperiods versions 0.1.1 dated 2026-04-21 and 0.1.2 dated 2026-04-28
DESCRIPTION | 7 +- MD5 | 48 +++++++------- NEWS.md | 35 ++++++++++ R/PNADCperiods-package.R | 2 R/fetch-sidra-population.R | 28 ++++++-- R/fetch-sidra-series.R | 26 ++++++- R/mensalize-sidra-series.R | 87 +++++++++++++++++++++++--- R/pnadc-apply-periods.R | 17 ++++- README.md | 23 ++++++ inst/doc/download-and-prepare.Rmd | 5 - inst/doc/download-and-prepare.html | 15 +--- inst/doc/getting-started.Rmd | 7 +- inst/doc/getting-started.html | 7 +- tests/testthat/helper-test-data.R | 28 ++++++++ tests/testthat/test-calibration-correctness.R | 32 +++++++-- tests/testthat/test-derived-propagation.R |only tests/testthat/test-edge-cases.R | 4 - tests/testthat/test-fetch-sidra-population.R | 23 ++++++ tests/testthat/test-fetch-sidra-series.R | 30 ++++++++ tests/testthat/test-fix-interactions.R |only tests/testthat/test-integration-pipeline.R | 26 +++++-- tests/testthat/test-pnadc-apply-periods.R | 10 +- tests/testthat/test-pre-pnadc-lag.R |only tests/testthat/test-starting-points.R | 54 ++++++++++++++++ tests/testthat/test-trailing-na.R |only vignettes/download-and-prepare.Rmd | 5 - vignettes/getting-started.Rmd | 7 +- 27 files changed, 438 insertions(+), 88 deletions(-)
Title: Time Series Management and Analysis for Hydrological Modelling
Description: S3 functions for management, analysis, interpolation and plotting of time series used in hydrology and related environmental sciences. In particular, this package is highly oriented to hydrological modelling tasks. The focus of this package has been put in providing a collection of tools useful for the daily work of hydrologists (although an effort was made to optimise each function as much as possible, functionality has had priority over speed). Bugs / comments / questions / collaboration of any kind are very welcomed, and in particular, datasets that can be included in this package for academic purposes.
Author: Mauricio Zambrano-Bigiarini [aut, cre, cph] ,
Joschka Thurner [ctb]
Maintainer: Mauricio Zambrano-Bigiarini <mzb.devel@gmail.com>
Diff between hydroTSM versions 0.7-0.1 dated 2024-11-04 and 0.8-6 dated 2026-04-28
DESCRIPTION | 20 +- MD5 | 118 +++++++------ NAMESPACE | 4 NEWS.md | 86 +++++++++ R/baseflow.R | 206 ++++++++++++++--------- R/check_from_and_to_and_subset.R |only R/cmv.R | 224 ++++++++++++++------------ R/daily2annual.R | 131 +++++++++------ R/daily2monthly.R | 13 - R/daily2weekly.R | 13 - R/fdc.R | 17 + R/hydroplot.R | 102 ++++++----- R/isComplete.R |only R/izoo2rzoo.R | 78 ++++++--- R/matrixplot.R | 84 ++++++++- R/plot_pq.R | 81 +++++---- R/shiftyears.R |only R/subdaily2daily.R | 33 ++- R/subdaily2monthly.R | 36 ++-- R/subdaily2weekly.R | 13 - R/subhourly2hourly.R | 36 ++-- R/subhourly2nminutes.R | 22 +- R/weeklyfunction.R | 15 + build/vignette.rds |binary data/Cauquenes7336001.RData |binary data/EbroPPtsMonthly.RData |binary data/KarameaAtGorgeQts.RData |binary data/MaquehueTemuco.RData |binary data/OcaEnOnaQts.RData |binary data/SanMartinoPPts.RData |binary inst/CITATION | 22 +- inst/doc/hydroTSM_Daily_P_Vignette-knitr.R | 8 inst/doc/hydroTSM_Daily_P_Vignette-knitr.Rmd | 19 +- inst/doc/hydroTSM_Daily_P_Vignette-knitr.pdf |binary inst/doc/hydroTSM_Daily_Q_Vignette-knitr.R | 16 - inst/doc/hydroTSM_Daily_Q_Vignette-knitr.Rmd | 47 +++-- inst/doc/hydroTSM_Daily_Q_Vignette-knitr.pdf |binary man/KarameaAtGorgeQts.Rd | 12 - man/MaquehueTemuco.Rd | 2 man/baseflow.Rd | 18 +- man/climograph.Rd | 6 man/cmv.Rd | 21 +- man/daily2annual.Rd | 30 ++- man/daily2monthly.Rd | 8 man/daily2weekly.Rd | 2 man/fdc.Rd | 16 + man/figures |only man/hydroTSM-internal.Rd | 1 man/hydroTSM-package.Rd | 9 - man/hydroplot.Rd | 35 ++-- man/isComplete.Rd |only man/izoo2rzoo.Rd | 46 +++-- man/matrixplot.Rd | 35 +++- man/plot_pq.Rd | 81 ++++----- man/sfreq.Rd | 2 man/shiftyears.Rd |only man/subdaily2daily.Rd | 8 man/subdaily2weekly.Rd | 23 -- man/subhourly2hourly.Rd | 15 + man/subhourly2nminutes.Rd | 13 + man/zoo2RHtest.Rd | 6 vignettes/hydroTSM_Daily_P_Vignette-knitr.Rmd | 19 +- vignettes/hydroTSM_Daily_Q_Vignette-knitr.Rmd | 47 +++-- 63 files changed, 1228 insertions(+), 671 deletions(-)
Title: Data for Comparing Species Distribution Modeling Methods
Description: Easy access to species distribution data for 6 regions in the world, for a total of 226 anonymised species. These data are described and made available by Elith et al (2020) <doi:10.17161/bi.v15i2.13384> to compare species distribution modelling methods.
Author: Robert J. Hijmans [aut] ,
Roozbeh Valavi [cre, aut],
Jane Elith [aut]
Maintainer: Roozbeh Valavi <valavi.r@gmail.com>
Diff between disdat versions 1.0-1 dated 2023-02-07 and 1.1-0 dated 2026-04-28
DESCRIPTION | 12 MD5 | 22 - R/disOther.R | 2 R/disdata.R | 2 build/vignette.rds |binary inst/doc/data_vis.R | 186 ++++---- inst/doc/data_vis.html | 1048 ++++++++++++++++++++++++++++++------------------- inst/doc/modeling.R | 288 ++++++------- inst/doc/modeling.Rmd | 2 inst/doc/modeling.html | 294 ++++++------- man/disMapBook.Rd | 2 vignettes/modeling.Rmd | 2 12 files changed, 1056 insertions(+), 804 deletions(-)
Title: Analyze High-Dimensional High-Throughput Dataset and Quality
Control Single-Cell RNA-Seq
Description: The advent of genomic technologies has enabled the generation of two-dimensional or even multi-dimensional high-throughput data, e.g., monitoring multiple changes in gene expression in genome-wide siRNA screens across many different cell types (E Robert McDonald 3rd (2017) <doi: 10.1016/j.cell.2017.07.005> and Tsherniak A (2017) <doi: 10.1016/j.cell.2017.06.010>) or single cell transcriptomics under different experimental conditions. We found that simple computational methods based on a single statistical criterion is no longer adequate for analyzing such multi-dimensional data. We herein introduce 'ZetaSuite', a statistical package initially designed to score hits from two-dimensional RNAi screens.We also illustrate a unique utility of 'ZetaSuite' in analyzing single cell transcriptomics to differentiate rare cells from damaged ones (Vento-Tormo R (2018) <doi: 10.1038/s41586-018-0698-6>). In 'ZetaSuite', we have the following steps: QC of input datasets, normalizati [...truncated...]
Author: Junhui Li [aut, cre] ,
Yajing Hao [aut] ,
Shuyang Zhang [ctb] ,
Guofeng Zhao [ctb],
Xiang-Dong Fu [cph, fnd]
Maintainer: Junhui Li <ljh.biostat@gmail.com>
Diff between ZetaSuite versions 1.0.2 dated 2025-09-24 and 1.0.3 dated 2026-04-28
DESCRIPTION | 20 +- MD5 | 4 inst/doc/ZetaSuite.html | 451 ++++++++++++++++++++++++------------------------ 3 files changed, 238 insertions(+), 237 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-11 0.2.2
2023-07-17 0.2.1
2023-01-17 0.2.0
2022-11-01 0.1.1
2022-07-20 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-29 3.2.0
2024-01-10 3.1.0
2023-10-26 3.0.2
2023-10-23 3.0.1
2023-10-14 3.0.0
2022-09-08 2.1.0
2022-01-09 2.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-08 3.0.3
2026-01-25 3.0.2
2025-09-28 3.0.0
2025-09-02 2.3.1
2024-02-26 2.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-12-02 0.3.1
2025-11-12 0.3.0
2024-08-20 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-08-18 1.1.0
2025-07-15 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-28 1.0
Title: Single-Case Data Analyses for Single and Multiple Baseline
Designs
Description: A collection of procedures for analysing, visualising,
and managing single-case data. Multi-phase and multi-baseline designs are
supported. Analysing methods include regression models
(multilevel, multivariate, bayesian), between case standardised mean difference,
overlap indices ('PND', 'PEM', 'PAND', 'NAP', 'PET', 'tau-u', 'IRD', 'baseline corrected tau',
'CDC'), and randomization tests. Data preparation functions support outlier
detection, handling missing values, scaling, and custom transformations.
An export function helps to generate html, word, and latex tables in a
publication friendly style. A shiny app allows to use scan in a graphical
user interface.
More details can be found in the online book 'Analyzing single-case data with
R and scan', Juergen Wilbert (2026)
<https://jazznbass.github.io/scan-Book/>.
Author: Juergen Wilbert [cre, aut] ,
Timo Lueke [aut]
Maintainer: Juergen Wilbert <juergen.wilbert@uni-muenster.de>
Diff between scan versions 0.68.0 dated 2026-04-01 and 0.68.1 dated 2026-04-28
scan-0.68.0/scan/tests/testthat/helper-checksum.R |only scan-0.68.1/scan/DESCRIPTION | 11 +- scan-0.68.1/scan/MD5 | 80 +++++++++---------- scan-0.68.1/scan/NAMESPACE | 1 scan-0.68.1/scan/NEWS.md | 4 scan-0.68.1/scan/R/add_l2.R | 4 scan-0.68.1/scan/R/as_scdf.R | 6 - scan-0.68.1/scan/R/between_smd.R | 12 +- scan-0.68.1/scan/R/cdc.R | 4 scan-0.68.1/scan/R/corrected_tau.R | 12 +- scan-0.68.1/scan/R/deprec-truncate_phase.R | 2 scan-0.68.1/scan/R/design.R | 7 - scan-0.68.1/scan/R/export.R | 2 scan-0.68.1/scan/R/hplm.R | 2 scan-0.68.1/scan/R/message-system.R | 88 ++++++++++++++++----- scan-0.68.1/scan/R/mplm.R | 2 scan-0.68.1/scan/R/plm_contrasts.R | 4 scan-0.68.1/scan/R/plot.scdf.R | 8 - scan-0.68.1/scan/R/private-regression.R | 2 scan-0.68.1/scan/R/private-utilities.R | 5 - scan-0.68.1/scan/R/private_check.R | 8 - scan-0.68.1/scan/R/private_check_scdf.R | 4 scan-0.68.1/scan/R/private_kendall.R | 4 scan-0.68.1/scan/R/private_mc_function.R | 2 scan-0.68.1/scan/R/private_options.R | 4 scan-0.68.1/scan/R/private_options_mc.R | 8 - scan-0.68.1/scan/R/private_recombine_phases.R | 8 - scan-0.68.1/scan/R/random_scdf.R | 2 scan-0.68.1/scan/R/rci.R | 2 scan-0.68.1/scan/R/read_scdf.R | 2 scan-0.68.1/scan/R/scan-package.R | 1 scan-0.68.1/scan/R/scdf-functions.R | 6 - scan-0.68.1/scan/R/scdf.R | 18 +--- scan-0.68.1/scan/R/shinyscan.R | 6 - scan-0.68.1/scan/man/abort.Rd |only scan-0.68.1/scan/man/notify.Rd |only scan-0.68.1/scan/man/warn.Rd |only scan-0.68.1/scan/tests/testthat/test-add_l2.R | 2 scan-0.68.1/scan/tests/testthat/test-anova.R | 6 - scan-0.68.1/scan/tests/testthat/test-bacht_apply.R | 2 scan-0.68.1/scan/tests/testthat/test-between_smd.R | 3 scan-0.68.1/scan/tests/testthat/test-cdc.R | 5 - scan-0.68.1/scan/tests/testthat/test-corrected.R | 3 43 files changed, 194 insertions(+), 158 deletions(-)
Title: Fractionally Differenced ARIMA aka ARFIMA(P,d,q) Models
Description: Maximum likelihood estimation of the parameters of a fractionally
differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics, 1989);
including inference and basic methods. Some alternative algorithms to estimate "H".
Author: Martin Maechler [aut, cre] ,
Chris Fraley [ctb, cph] ,
Friedrich Leisch [ctb] ,
Valderio Reisen [ctb] & fdSperio),
Artur Lemonte [ctb] & fdSperio),
Rob Hyndman [ctb] & fitted, ORCID:
<https://orcid.org/0000-0002-2140-5352>)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between fracdiff versions 1.5-3 dated 2024-02-01 and 1.5-4 dated 2026-04-28
ChangeLog | 12 +++++++++ DESCRIPTION | 19 ++++++++------- MD5 | 26 ++++++++++---------- R/fd-methods.R | 1 R/fracdiff.R | 41 ++++++++++++++++++++------------ build/partial.rdb |binary man/fd-methods.Rd | 7 ----- man/fracdiff.var.Rd | 15 +++++++----- src/fdhess.c | 2 - tests/ex.R | 32 +++++++++++++++++-------- tests/ex.Rout.save | 56 +++++++++++++++++++++++++++----------------- tests/sim-2.R | 47 ++++++++++++++++++++++++++++++++++--- tests/sim-ex.R | 6 ++-- tests/sim-ex.Rout.save | 61 ++++++++++++++++++++++++------------------------- 14 files changed, 204 insertions(+), 121 deletions(-)
Title: Self-Adapting Mixture (SAM) Priors
Description: Implementation of the SAM prior and generation of its
operating characteristics for dynamically borrowing information
from historical data. For details, please refer to Yang et al. (2023)
<doi:10.1111/biom.13927>.
Author: Peng Yang [aut, cre] ,
Ying Yuan [aut]
Maintainer: Peng Yang <pyang7@mdanderson.org>
Diff between SAMprior versions 2.0.0 dated 2025-01-17 and 3.0.0 dated 2026-04-27
DESCRIPTION | 16 MD5 | 50 + NAMESPACE | 12 NEWS.md | 3 R/calibrate_cutoff_2arm.R |only R/calibrate_cutoff_bin_2arm.R |only R/calibrate_cutoff_cont_2arm.R |only R/eval_oc_bin_2arm.R |only R/eval_oc_cont_2arm.R |only R/eval_scenario_bin_2arm.R |only R/eval_scenario_cont_2arm.R |only R/get_OC.R | 1041 ++++++++++++++++++++------------------ R/post_summary_bin_2arm.R |only R/post_summary_cont_2arm.R |only R/posterior_control_bin.R |only R/posterior_control_cont.R |only R/utils_mixbeta.R |only R/utils_mixnorm.R |only build/vignette.rds |binary inst/doc/Example_binary.R | 80 +- inst/doc/Example_binary.Rmd | 194 ++++--- inst/doc/Example_binary.html | 870 ++++++++++++++++++++----------- inst/doc/Example_continuous.R | 113 ++-- inst/doc/Example_continuous.Rmd | 212 ++++--- inst/doc/Example_continuous.html | 873 ++++++++++++++++++++----------- man/calibrate_cutoff_2arm.Rd |only man/calibrate_cutoff_bin_2arm.Rd |only man/calibrate_cutoff_cont_2arm.Rd |only man/eval_oc_bin_2arm.Rd |only man/eval_oc_cont_2arm.Rd |only man/eval_scenario_bin_2arm.Rd |only man/eval_scenario_cont_2arm.Rd |only man/get_OC.Rd | 268 ++++----- man/post_summary_bin_2arm.Rd |only man/post_summary_cont_2arm.Rd |only vignettes/Example_binary.Rmd | 194 ++++--- vignettes/Example_continuous.Rmd | 212 ++++--- 37 files changed, 2490 insertions(+), 1648 deletions(-)
Title: Builds the 'TinyCC' Command-Line Interface and Library for 'C'
Scripting in 'R'
Description: Builds the 'TinyCC' (Tiny 'C' Compiler) command-line interface
and library for package use in 'R'. The package compiles 'TinyCC' from source and
provides R functions to interact with the compiler. 'TinyCC' can be
used for header preprocessing, just-in-time compilation of 'C' code in
'R', and lightweight 'C' scripting workflows.
Author: Sounkou Mahamane Toure [aut, cre],
Mike Cheng [cph] ,
Fabrice Bellard and tinycc Authors [ctb]
authors and COPYRIGHT holders)
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>
Diff between Rtinycc versions 0.1.9 dated 2026-04-27 and 0.1.10 dated 2026-04-27
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 11 +++++++++++ configure | 11 +++++++++-- inst/doc/compilation-and-call-overhead.html | 18 +++++++++--------- inst/doc/ffi-helpers.html | 8 ++++---- inst/doc/getting-started.html | 10 +++++----- 7 files changed, 47 insertions(+), 29 deletions(-)
Title: Functional Tangential Angle Pseudo-Depth
Description: Contains functions to compute the functional tangential angle pseudo-depth and its robustified version from the paper by Kuhnt and Rehage (2016). See Kuhnt, S.; Rehage, A. (2016): An angle-based multivariate functional pseudo-depth for shape outlier detection, JMVA 146, 325-340, <doi:10.1016/j.jmva.2015.10.016> for details.
Author: Andre Rehage [aut, cre]
Maintainer: Andre Rehage <andre.rehage@gmx.de>
Diff between FUNTA versions 0.1.0 dated 2016-04-01 and 0.1.1 dated 2026-04-27
FUNTA-0.1.0/FUNTA/man/FUNTA-package.Rd |only FUNTA-0.1.1/FUNTA/DESCRIPTION | 18 +++++++++++------- FUNTA-0.1.1/FUNTA/MD5 | 11 +++++------ FUNTA-0.1.1/FUNTA/NAMESPACE | 5 +++-- FUNTA-0.1.1/FUNTA/R/FUNTA.R | 4 ++-- FUNTA-0.1.1/FUNTA/R/angle.R | 4 ++-- FUNTA-0.1.1/FUNTA/R/rFUNTA.R | 7 +++---- 7 files changed, 26 insertions(+), 23 deletions(-)
Title: Data on Base and Recommended Packages for Current and Previous
Versions of R
Description: Provides a dataset of functions in all base and recommended packages of R versions 0.50 onwards.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between rcheology versions 4.5.3.0 dated 2026-03-25 and 4.6.0.0 dated 2026-04-27
DESCRIPTION | 6 +- MD5 | 14 ++--- NEWS.md | 5 ++ README.md | 74 +++++++++++++++++-------------- data/Rversions.rda |binary data/rcheology.rda |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary 8 files changed, 56 insertions(+), 43 deletions(-)
Title: Download Data from the 'Bank of England' Statistical Database
Description: Provides functions to download and tidy statistical data
published by the 'Bank of England' <https://www.bankofengland.co.uk>.
Covers Bank Rate, 'SONIA', gilt yields, exchange rates, mortgage rates,
mortgage approvals, consumer credit, and money supply. Series are
fetched from the 'Bank of England Interactive Statistical Database'
using its CSV endpoint. Data is cached locally between sessions.
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between boe versions 0.1.2 dated 2026-03-17 and 0.2.0 dated 2026-04-27
DESCRIPTION | 12 + MD5 | 59 ++++++--- NAMESPACE | 8 + NEWS.md | 54 ++++++++ R/boe_bank_rate.R | 8 + R/boe_cache_info.R |only R/boe_consumer_credit.R | 8 + R/boe_curve.R |only R/boe_exchange_rate.R | 8 + R/boe_get.R | 7 - R/boe_money_supply.R | 8 + R/boe_mortgage_approvals.R | 8 + R/boe_mortgage_rates.R | 8 + R/boe_mpc_decisions.R |only R/boe_mpc_votes.R |only R/boe_mpr_forecasts.R |only R/boe_search.R |only R/boe_sonia.R | 8 + R/boe_tbl.R |only R/boe_yield_curve.R | 8 + R/data.R |only README.md | 194 ++++++++++++++++++++++++++++++-- data |only man/boe-package.Rd | 1 man/boe_bank_rate.Rd | 1 man/boe_browse.Rd |only man/boe_cache_info.Rd |only man/boe_curve.Rd |only man/boe_mpc_decisions.Rd |only man/boe_mpc_votes.Rd |only man/boe_mpr_forecasts.Rd |only man/boe_search.Rd |only man/boe_series.Rd |only man/boe_sonia.Rd | 1 man/boe_yield_curve.Rd | 1 man/print.boe_tbl.Rd |only tests/testthat/test-boe_cache_info.R |only tests/testthat/test-boe_curve.R |only tests/testthat/test-boe_mpc_decisions.R |only tests/testthat/test-boe_mpc_votes.R |only tests/testthat/test-boe_mpr_forecasts.R |only tests/testthat/test-boe_search.R |only tests/testthat/test-boe_tbl.R |only 43 files changed, 359 insertions(+), 43 deletions(-)
Title: Bootstrap Slope Heterogeneity Test for Panel Data
Description: Implements the bootstrap slope heterogeneity test for panel data
based on Blomquist and Westerlund (2015) <doi:10.1007/s00181-015-0978-z>.
Tests the null hypothesis that slope coefficients are homogeneous across
cross-sectional units. Provides both standard and adjusted Delta statistics
with bootstrap p-values. Supports partialling out of control variables and
cross-sectional averages for dealing with cross-sectional dependence.
Author: Muhammad Alkhalaf [aut, cre, cph] ,
Tore Bersvendsen [ctb]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between xtbhst versions 1.0.1 dated 2026-03-13 and 1.0.2 dated 2026-04-27
DESCRIPTION | 12 MD5 | 33 - NAMESPACE | 38 - NEWS.md | 29 - R/imports.R | 10 R/methods.R | 500 +++++++++---------- R/xtbhst-package.R | 116 ++-- R/xtbhst.R | 1124 +++++++++++++++++++++---------------------- README.md | 2 build/partial.rdb |binary inst |only man/plot.xtbhst.Rd | 56 +- man/print.xtbhst.Rd | 42 - man/summary.xtbhst.Rd | 42 - man/xtbhst-package.Rd | 1 man/xtbhst.Rd | 256 ++++----- tests/testthat.R | 24 tests/testthat/test-xtbhst.R | 372 +++++++------- 18 files changed, 1332 insertions(+), 1325 deletions(-)
Title: A Toolkit for Research Workflows
Description: Provides utility functions to help researchers implement best
practices for their coding projects. Includes tools for reading and
cleaning data files, initializing R projects with a standard folder
structure, creating Quarto documents from a reproducible template,
detecting the execution context across interactive, Quarto, and
script-based workflows, and splitting data frames into group-level
output files.
Author: Erwin Lares [aut, cre]
Maintainer: Erwin Lares <erwin.lares@wisc.edu>
Diff between toolero versions 0.2.0 dated 2026-04-24 and 0.3.0 dated 2026-04-27
toolero-0.2.0/toolero/tests/testthat/test-write_by_groups.R |only toolero-0.3.0/toolero/DESCRIPTION | 10 toolero-0.3.0/toolero/MD5 | 42 - toolero-0.3.0/toolero/NAMESPACE | 2 toolero-0.3.0/toolero/NEWS.md | 64 ++ toolero-0.3.0/toolero/R/create-qmd.R | 111 +++- toolero-0.3.0/toolero/R/generate-kb-xml.R |only toolero-0.3.0/toolero/R/imports.R |only toolero-0.3.0/toolero/R/init-project.R | 28 - toolero-0.3.0/toolero/R/write-by-group.R | 9 toolero-0.3.0/toolero/README.md | 84 ++- toolero-0.3.0/toolero/inst/doc/toolero-intro.R | 49 +- toolero-0.3.0/toolero/inst/doc/toolero-intro.Rmd | 290 ++++++++---- toolero-0.3.0/toolero/inst/doc/toolero-intro.html | 285 +++++++---- toolero-0.3.0/toolero/inst/templates/_quarto.yml |only toolero-0.3.0/toolero/inst/templates/example.qmd | 2 toolero-0.3.0/toolero/inst/templates/purl.R |only toolero-0.3.0/toolero/man/create_qmd.Rd | 43 + toolero-0.3.0/toolero/man/generate_kb_xml.Rd |only toolero-0.3.0/toolero/man/init_project.Rd | 12 toolero-0.3.0/toolero/man/write_by_group.Rd | 4 toolero-0.3.0/toolero/tests/testthat/test-create_qmd.R | 219 ++++++--- toolero-0.3.0/toolero/tests/testthat/test-generate-kb-xml.R |only toolero-0.3.0/toolero/tests/testthat/test-init-project.R | 11 toolero-0.3.0/toolero/tests/testthat/test-write_by_group.R |only toolero-0.3.0/toolero/vignettes/toolero-intro.Rmd | 290 ++++++++---- 26 files changed, 1097 insertions(+), 458 deletions(-)
Title: C-Like 'getopt' Behavior
Description: Package designed to be used with Rscript to write
'#!' shebang scripts that accept short and long flags/options.
Many users will prefer using instead the packages optparse or argparse
which add extra features like automatically generated help option and usage,
support for default values, positional argument support, etc.
Author: Trevor L. Davis [aut, cre] ,
Allen Day [aut] ,
Roman Zenka [ctb]
Maintainer: Trevor L. Davis <trevor.l.davis@gmail.com>
Diff between getopt versions 1.20.4 dated 2023-10-01 and 1.21.1 dated 2026-04-27
getopt-1.20.4/getopt/man/get_Rscript_filename.Rd |only getopt-1.21.1/getopt/DESCRIPTION | 22 getopt-1.21.1/getopt/MD5 | 26 getopt-1.21.1/getopt/NAMESPACE | 4 getopt-1.21.1/getopt/NEWS.md | 53 + getopt-1.21.1/getopt/R/constants.R |only getopt-1.21.1/getopt/R/getopt.R | 762 +++++++++++----------- getopt-1.21.1/getopt/R/utils.R | 124 +++ getopt-1.21.1/getopt/README.md | 92 +- getopt-1.21.1/getopt/exec/display_file.R |only getopt-1.21.1/getopt/exec/example.R | 65 + getopt-1.21.1/getopt/man/getfile.Rd |only getopt-1.21.1/getopt/man/getoperand.Rd |only getopt-1.21.1/getopt/man/getopt.Rd | 120 +-- getopt-1.21.1/getopt/man/getusage.Rd |only getopt-1.21.1/getopt/tests/testthat/_snaps |only getopt-1.21.1/getopt/tests/testthat/test-getopt.R | 445 ++++++++---- getopt-1.21.1/getopt/tests/testthat/test-utils.R |only 18 files changed, 1046 insertions(+), 667 deletions(-)
Title: Selecting Variables in Regression Models
Description: A simple method
to select the best model or best subset of variables using
different types of data (binary, Gaussian or Poisson) and
applying it in different contexts (parametric or non-parametric).
Implemented methodology described in: M. Sestelo, N. M. Villanueva,
L. Meira-Machado and J. Roca-Pardiñas (2016). FWDselect: an R package for
variable selection in regression models. The R Journal, 8 (1), 132-148. <doi:10.32614/RJ-2016-009>.
Author: Marta Sestelo [aut, cre, cph] ,
Nora M. Villanueva [aut, cph],
Javier Roca-Pardinas [aut]
Maintainer: Marta Sestelo <sestelo@uvigo.gal>
Diff between FWDselect versions 2.1.0 dated 2015-12-19 and 2.1.1 dated 2026-04-27
FWDselect-2.1.0/FWDselect/man/FWDselect.Rd |only FWDselect-2.1.1/FWDselect/DESCRIPTION | 36 +++++++++++---------- FWDselect-2.1.1/FWDselect/MD5 | 32 +++++++++--------- FWDselect-2.1.1/FWDselect/NEWS | 5 ++ FWDselect-2.1.1/FWDselect/R/FWDselect.R | 9 +---- FWDselect-2.1.1/FWDselect/R/qselection.R | 3 + FWDselect-2.1.1/FWDselect/R/selection.R | 7 ++-- FWDselect-2.1.1/FWDselect/R/test.R | 3 - FWDselect-2.1.1/FWDselect/man/FWDselect-package.Rd |only FWDselect-2.1.1/FWDselect/man/diabetes.Rd | 7 ++-- FWDselect-2.1.1/FWDselect/man/episode.Rd | 7 ++-- FWDselect-2.1.1/FWDselect/man/plot.qselection.Rd | 7 +--- FWDselect-2.1.1/FWDselect/man/pollution.Rd | 7 ++-- FWDselect-2.1.1/FWDselect/man/print.qselection.Rd | 7 +--- FWDselect-2.1.1/FWDselect/man/print.selection.Rd | 7 +--- FWDselect-2.1.1/FWDselect/man/qselection.Rd | 20 ++++++++--- FWDselect-2.1.1/FWDselect/man/selection.Rd | 18 ++++++++-- FWDselect-2.1.1/FWDselect/man/test.Rd | 27 ++++++++++----- 18 files changed, 119 insertions(+), 83 deletions(-)
Title: Empirical Cumulative Distribution Function Niche Modeling Tools
Description: Simulate ecological niche models using Mahalanobis distance, transform distances to
suitability with 1 - empirical cumulative distribution function and 1 - chi-squared, and
generate comparison figures.
Author: Luiz Fernando Esser [aut, cre, cph] ,
Matheus Baumgartner [aut] ,
Dayani Bailly [aut] ,
Marcos R. Lima [aut] ,
Reginaldo Re [aut]
Maintainer: Luiz Fernando Esser <luizesser@gmail.com>
Diff between ECDFniche versions 0.4 dated 2026-04-27 and 0.5 dated 2026-04-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/mahal.dist.R | 2 +- 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Verifiable FDR Diagnostics for Proteomics
Description: Provides methods to compute verifiable false discovery rate (FDR) diagnostic checks for workflows based on target-decoy competition and related confidence measures. Implements calibration, stability and tail diagnostics, including tail support, threshold elasticity, posterior error probability (PEP) reliability, and equal-chance checks. If you used this package in your research, please cite the associated preprint <doi:10.64898/2026.04.16.718468>. Detailed examples of using this package can also be found on the GitHub repository (<https://github.com/Jacky11/diagFDR>).
Author: Quentin Giai Gianetto [aut, cre]
Maintainer: Quentin Giai Gianetto <quentin.giaigianetto@pasteur.fr>
Diff between diagFDR versions 0.1.0 dated 2026-04-13 and 0.1.1 dated 2026-04-27
DESCRIPTION | 9 +- MD5 | 7 +- R/render_report.R | 163 +++++++++++++++++++++++------------------------ R/report_write.R |only man/dfdr_write_report.Rd | 16 ++++ 5 files changed, 106 insertions(+), 89 deletions(-)
Title: Construct Mixed Type Data Structures with Vectors of Vectors
Description: Mixed type vectors are useful for combining semantically similar
classes. Some examples of semantically related classes include time across
different granularities (e.g. daily, monthly, annual) and probability
distributions (e.g. Normal, Uniform, Poisson). These groups of vector types
typically share common statistical operations which vary in results with the
attributes of each vector. The 'vecvec' data structure facilitates efficient
storage and computation across multiple vectors within the same object.
Author: Mitchell O'Hara-Wild [aut, cre]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between vecvec versions 0.2.1 dated 2026-04-08 and 1.0.0 dated 2026-04-27
vecvec-0.2.1/vecvec/R/dispatch.R |only vecvec-0.2.1/vecvec/R/missing.R |only vecvec-0.2.1/vecvec/R/vecvec_apply.R |only vecvec-0.2.1/vecvec/R/vecvec_compress.R |only vecvec-0.2.1/vecvec/R/vecvec_math.R |only vecvec-0.2.1/vecvec/R/vecvec_sort.R |only vecvec-0.2.1/vecvec/man/new_vecvec.Rd |only vecvec-0.2.1/vecvec/tests/testthat/test-missing.R |only vecvec-1.0.0/vecvec/DESCRIPTION | 18 vecvec-1.0.0/vecvec/MD5 | 63 ++- vecvec-1.0.0/vecvec/NAMESPACE | 43 +- vecvec-1.0.0/vecvec/NEWS.md | 28 + vecvec-1.0.0/vecvec/R/00_S7_classes.R |only vecvec-1.0.0/vecvec/R/apply.R |only vecvec-1.0.0/vecvec/R/coercion.R |only vecvec-1.0.0/vecvec/R/compare.R |only vecvec-1.0.0/vecvec/R/flatten.R |only vecvec-1.0.0/vecvec/R/group-methods.R |only vecvec-1.0.0/vecvec/R/hook.R | 92 ++++ vecvec-1.0.0/vecvec/R/predicates.R |only vecvec-1.0.0/vecvec/R/rep.R |only vecvec-1.0.0/vecvec/R/replacement.R |only vecvec-1.0.0/vecvec/R/sort.R |only vecvec-1.0.0/vecvec/R/statistic.R |only vecvec-1.0.0/vecvec/R/utils.R |only vecvec-1.0.0/vecvec/R/vctrs.R |only vecvec-1.0.0/vecvec/R/vecvec-package.R | 2 vecvec-1.0.0/vecvec/R/vecvec.R | 364 +++++++++++------- vecvec-1.0.0/vecvec/R/zzz.R | 29 - vecvec-1.0.0/vecvec/README.md | 60 +- vecvec-1.0.0/vecvec/man/class_vecvec.Rd |only vecvec-1.0.0/vecvec/man/is_vecvec.Rd |only vecvec-1.0.0/vecvec/man/masked-cor.Rd |only vecvec-1.0.0/vecvec/man/unvecvec.Rd | 46 +- vecvec-1.0.0/vecvec/man/vecvec-package.Rd | 7 vecvec-1.0.0/vecvec/man/vecvec.Rd | 47 +- vecvec-1.0.0/vecvec/man/vecvec_apply.Rd | 15 vecvec-1.0.0/vecvec/man/vecvec_apply_fn.Rd |only vecvec-1.0.0/vecvec/man/vecvec_register.Rd |only vecvec-1.0.0/vecvec/tests/testthat/test-arith.R |only vecvec-1.0.0/vecvec/tests/testthat/test-array.R |only vecvec-1.0.0/vecvec/tests/testthat/test-compare.R |only vecvec-1.0.0/vecvec/tests/testthat/test-complex.R |only vecvec-1.0.0/vecvec/tests/testthat/test-math.R |only vecvec-1.0.0/vecvec/tests/testthat/test-predicates.R |only vecvec-1.0.0/vecvec/tests/testthat/test-replacement.R |only vecvec-1.0.0/vecvec/tests/testthat/test-sort.R |only vecvec-1.0.0/vecvec/tests/testthat/test-statistic.R |only vecvec-1.0.0/vecvec/tests/testthat/test-summary.R |only vecvec-1.0.0/vecvec/tests/testthat/test-vctrs.R | 296 +++++++++++--- vecvec-1.0.0/vecvec/tests/testthat/test-vecvec.R |only 51 files changed, 802 insertions(+), 308 deletions(-)
Title: Sparse Functional Data Analysis Methods
Description: Provides algorithms to fit linear regression models under several popular penalization techniques and functional linear regression models based on Majorizing-Minimizing (MM) and Alternating Direction Method of Multipliers (ADMM) techniques.
See Boyd et al (2010) <doi:10.1561/2200000016> for complete introduction to the method.
Author: Mauro Bernardi [aut, cre],
Marco Stefanucci [aut],
Antonio Canale [ctb]
Maintainer: Mauro Bernardi <mauro.bernardi@unipd.it>
Diff between fdaSP versions 1.1.1 dated 2023-10-05 and 1.1.2 dated 2026-04-27
fdaSP-1.1.1/fdaSP/R/admm_auxiliary_fun.R |only fdaSP-1.1.1/fdaSP/R/lambdamaxutils.R |only fdaSP-1.1.1/fdaSP/src/linreg_ADMM.cpp |only fdaSP-1.1.1/fdaSP/src/linreg_ADMM.h |only fdaSP-1.1.1/fdaSP/src/linreg_ADMM_cov.cpp |only fdaSP-1.1.1/fdaSP/src/linreg_ADMM_cov.h |only fdaSP-1.1.2/fdaSP/DESCRIPTION | 12 fdaSP-1.1.2/fdaSP/MD5 | 78 fdaSP-1.1.2/fdaSP/NAMESPACE | 2 fdaSP-1.1.2/fdaSP/R/RcppExports.R | 288 ++- fdaSP-1.1.2/fdaSP/R/auxiliary_fun.R |only fdaSP-1.1.2/fdaSP/R/dof_utils.R |only fdaSP-1.1.2/fdaSP/R/f2freg.R | 28 fdaSP-1.1.2/fdaSP/R/f2sreg.R | 750 ++++++- fdaSP-1.1.2/fdaSP/R/glasso_norms_utils.R |only fdaSP-1.1.2/fdaSP/R/lambdamax_utils.R |only fdaSP-1.1.2/fdaSP/R/linreg_ADMM_GLASSO.R | 62 fdaSP-1.1.2/fdaSP/R/linreg_ADMM_GLASSO_cv.R | 6 fdaSP-1.1.2/fdaSP/R/linreg_ADMM_LASSO.R | 150 + fdaSP-1.1.2/fdaSP/R/linreg_ADMM_LASSO_cv.R | 6 fdaSP-1.1.2/fdaSP/R/linreg_ADMM_OVGLASSO.R | 55 fdaSP-1.1.2/fdaSP/R/linreg_ADMM_OVGLASSO_cv.R | 3 fdaSP-1.1.2/fdaSP/R/linreg_ADMM_spGLASSO_cv.R | 6 fdaSP-1.1.2/fdaSP/R/linreg_ADMM_spOVGLASSO.R | 28 fdaSP-1.1.2/fdaSP/R/linreg_ADMM_spOVGLASSO_cv.R | 73 fdaSP-1.1.2/fdaSP/R/lmreg.R | 123 + fdaSP-1.1.2/fdaSP/build/partial.rdb |binary fdaSP-1.1.2/fdaSP/man/f2sSP.Rd | 25 fdaSP-1.1.2/fdaSP/man/f2sSP_cv.Rd | 14 fdaSP-1.1.2/fdaSP/man/fdaSP.internal.Rd |only fdaSP-1.1.2/fdaSP/man/forward_diff.Rd |only fdaSP-1.1.2/fdaSP/man/lmSP.Rd | 16 fdaSP-1.1.2/fdaSP/man/lmSP_cv.Rd | 3 fdaSP-1.1.2/fdaSP/man/softhresh.Rd | 2 fdaSP-1.1.2/fdaSP/src/ADMMutilsLM.cpp | 2269 +++++------------------- fdaSP-1.1.2/fdaSP/src/ADMMutilsLM.h | 398 ++-- fdaSP-1.1.2/fdaSP/src/ADMMutilsOTHER.cpp | 207 +- fdaSP-1.1.2/fdaSP/src/ADMMutilsOTHER.h | 171 - fdaSP-1.1.2/fdaSP/src/MMutils.cpp | 4 fdaSP-1.1.2/fdaSP/src/RcppExports.cpp | 1206 ++++++++++-- fdaSP-1.1.2/fdaSP/src/dof_utils.cpp |only fdaSP-1.1.2/fdaSP/src/dof_utils.h |only fdaSP-1.1.2/fdaSP/src/linreg_glasso_ADMM.cpp |only fdaSP-1.1.2/fdaSP/src/linreg_glasso_ADMM.h |only fdaSP-1.1.2/fdaSP/src/linreg_lasso_ADMM.cpp |only fdaSP-1.1.2/fdaSP/src/linreg_lasso_ADMM.h |only fdaSP-1.1.2/fdaSP/src/linreg_ovglasso_ADMM.cpp |only fdaSP-1.1.2/fdaSP/src/linreg_ovglasso_ADMM.h |only fdaSP-1.1.2/fdaSP/src/utils.cpp | 488 +++++ fdaSP-1.1.2/fdaSP/src/utils.h | 83 50 files changed, 3856 insertions(+), 2700 deletions(-)
Title: Empirical Cumulative Distribution Function Niche Modeling Tools
Description: Simulate ecological niche models using Mahalanobis distance, transform distances to
suitability with 1 - empirical cumulative distribution function and 1 - chi-squared, and
generate comparison figures.
Author: Luiz Fernando Esser [aut, cre, cph] ,
Matheus Baumgartner [aut] ,
Dayani Bailly [aut] ,
Marcos R. Lima [aut] ,
Reginaldo Re [aut]
Maintainer: Luiz Fernando Esser <luizesser@gmail.com>
Diff between ECDFniche versions 0.1.0 dated 2025-12-19 and 0.4 dated 2026-04-27
ECDFniche-0.1.0/ECDFniche/R/ecdf_niche.R |only ECDFniche-0.1.0/ECDFniche/R/globals.R |only ECDFniche-0.1.0/ECDFniche/man/ecdf_niche.Rd |only ECDFniche-0.4/ECDFniche/DESCRIPTION | 34 ECDFniche-0.4/ECDFniche/MD5 | 38 ECDFniche-0.4/ECDFniche/NAMESPACE | 51 ECDFniche-0.4/ECDFniche/NEWS.md | 15 ECDFniche-0.4/ECDFniche/R/ecdf_compare_niche.R |only ECDFniche-0.4/ECDFniche/R/ecdf_nonnormal_niche.R |only ECDFniche-0.4/ECDFniche/R/ecdf_theoretical_niche.R |only ECDFniche-0.4/ECDFniche/R/generated-globals.R |only ECDFniche-0.4/ECDFniche/R/mahal.dist.R |only ECDFniche-0.4/ECDFniche/R/plot.R | 66 ECDFniche-0.4/ECDFniche/build/vignette.rds |binary ECDFniche-0.4/ECDFniche/inst/doc/ecdfniche.R | 6 ECDFniche-0.4/ECDFniche/inst/doc/ecdfniche.Rmd | 16 ECDFniche-0.4/ECDFniche/inst/doc/ecdfniche.html | 886 ---------- ECDFniche-0.4/ECDFniche/inst/doc/ecdfniche_comparison.R |only ECDFniche-0.4/ECDFniche/inst/doc/ecdfniche_comparison.Rmd |only ECDFniche-0.4/ECDFniche/inst/doc/ecdfniche_comparison.html |only ECDFniche-0.4/ECDFniche/man/create_distance_suitability_plot.Rd | 13 ECDFniche-0.4/ECDFniche/man/ecdf_compare_niche.Rd |only ECDFniche-0.4/ECDFniche/man/ecdf_nonnormal_niche.Rd |only ECDFniche-0.4/ECDFniche/man/ecdf_theoretical_niche.Rd |only ECDFniche-0.4/ECDFniche/man/mahal.dist.Rd |only ECDFniche-0.4/ECDFniche/man/run_ecdf_mahal_analysis.Rd | 2 ECDFniche-0.4/ECDFniche/vignettes/ecdfniche.Rmd | 16 ECDFniche-0.4/ECDFniche/vignettes/ecdfniche_comparison.Rmd |only 28 files changed, 212 insertions(+), 931 deletions(-)
Title: A General Framework for Combining Ecosystem Models
Description: Fit and sample from the ensemble model described in Spence et al (2018): "A general framework for combining ecosystem models"<doi:10.1111/faf.12310>.
Author: Michael A. Spence [aut, cre] ,
James A. Martindale [aut] ,
Michael J. Thomson [aut] ,
Thomas I. J. Bartos [aut],
Luke E. K. Broadbent [aut]
Maintainer: Michael A. Spence <michael.spence@cefas.gov.uk>
Diff between EcoEnsemble versions 1.1.2 dated 2025-03-18 and 1.2.0 dated 2026-04-27
DESCRIPTION | 34 MD5 | 123 - NAMESPACE | 9 NEWS.md | 5 R/EcoEnsemble-package.R | 51 R/EnsemblePrior-class.R | 302 +- R/Prior_sampling.R | 214 - R/fit_ensemble.R | 271 +- R/fit_ensemble_withdrivers.R | 85 R/get_samples_array.R |only R/get_stan_outputs.R | 498 ++-- R/plot_functions.R | 338 +- R/stan_sampling_utils.R |only R/stanmodels.R | 6 README.md | 168 - build/vignette.rds |binary inst/doc/BetaConjugatePrior.R | 294 +- inst/doc/BetaConjugatePrior.html | 16 inst/doc/ESS_vignette.R |only inst/doc/ESS_vignette.Rmd |only inst/doc/ESS_vignette.html |only inst/doc/EcoEnsemble.R | 88 inst/doc/EcoEnsemble.Rmd | 8 inst/doc/EcoEnsemble.html | 37 inst/doc/ExplicitSpeedUp.R |only inst/doc/ExplicitSpeedUp.Rmd |only inst/doc/ExplicitSpeedUp.html |only inst/doc/ExploringPriors.R | 230 - inst/doc/ExploringPriors.html | 30 inst/doc/IncludingDrivers.R | 332 +- inst/doc/IncludingDrivers.Rmd | 10 inst/doc/IncludingDrivers.html | 23 inst/doc/SyntheticData.R | 207 - inst/doc/SyntheticData.Rmd | 11 inst/doc/SyntheticData.html | 36 inst/stan/ensemble_model.stan | 745 +++--- inst/stan/ensemble_model_explicit.stan |only inst/stan/ensemble_model_hierarchical.stan | 845 +++---- inst/stan/ensemble_model_hierarchical_explicit.stan |only inst/stan/ensemble_model_hierarchical_withdrivers.stan | 1180 +++++----- inst/stan/ensemble_model_hierarchical_withdrivers_explicit.stan |only inst/stan/ensemble_model_withdrivers.stan | 1092 ++++----- inst/stan/ensemble_model_withdrivers_explicit.stan |only man/EcoEnsemble-package.Rd | 4 man/EnsemblePrior-class.Rd | 64 man/PriorConstructorFunctions.Rd | 368 +-- man/fit_ensemble_model.Rd | 4 man/get_ESS_func.Rd |only man/get_mcmc_ensemble_model.Rd | 12 man/get_stan_outputs.Rd | 2 man/sample_prior.Rd | 2 src/RcppExports.cpp | 8 tests/testthat/test-get_stanmodel.R | 34 tests/testthat/test-post_process.R | 413 +-- tests/testthat/test-post_process_withdrivers.R | 605 ++--- tests/testthat/test-prior_coms.R | 606 ++--- tests/testthat/test-warning_suppression.R |only vignettes/ESS_vignette.Rmd |only vignettes/EcoEnsemble.Rmd | 8 vignettes/ExplicitSpeedUp.Rmd |only vignettes/IncludingDrivers.Rmd | 10 vignettes/SyntheticData.Rmd | 11 vignettes/data/ESS_plot.png |only vignettes/data/ESS_plot1.png |only vignettes/data/diag_table.rds |only vignettes/data/explicit_plot1.png |only vignettes/data/explicit_plot2.png |only vignettes/data/explicit_plot3.png |only vignettes/data/explicit_plot4.png |only vignettes/data/pair_results.rds |only vignettes/data/plot_df.rds |only vignettes/data/plot_df2.rds |only vignettes/data/plot_df_ess.RData |only vignettes/data/plot_df_ess.rds |only vignettes/data/plot_samplerexplicit.png |only vignettes/data/posterior1.png |only vignettes/data/posterior2.png |only vignettes/data/section_sizes.rds |only vignettes/data/table_diag.rds |only 79 files changed, 4857 insertions(+), 4582 deletions(-)
Title: Joint Latent Process Models
Description: Estimation of extended joint models with shared random effects. Longitudinal data are handled in latent process models for continuous (Gaussian or curvilinear) and ordinal outcomes while proportional hazard models are used for the survival part. We propose a frequentist approach using maximum likelihood estimation. See Saulnier et al, 2022 <doi:10.1016/j.ymeth.2022.03.003>.
Author: Viviane Philipps [aut, cre],
Tiphaine Saulnier [aut],
Cecile Proust-Lima [aut]
Maintainer: Viviane Philipps <Viviane.Philipps@u-bordeaux.fr>
Diff between JLPM versions 1.0.2 dated 2023-10-06 and 1.0.3 dated 2026-04-27
DESCRIPTION | 16 MD5 | 59 NAMESPACE | 19 R/ForInternalUse.R |only R/IRT4Sselecting.R |only R/IRT4Sstaging.R |only R/JLPM-package.R | 91 - R/Pim.R |only R/Pim_prime.R |only R/WaldMult.R |only R/coef.jointLPM.R |only R/convert.R | 1 R/createX0.R |only R/derivMat.R |only R/diffSojournTime.R |only R/expect.R |only R/integrate_info.R |only R/jointLPM.R | 4155 ++++++++++++++++++++++++++----------------------- R/matrixGK.R |only R/plotAsso.R |only R/predictRE.R |only R/removeNA.R |only R/sojournTime.R |only R/summary.jointLPM.R | 937 +++++------ R/vcov.jointLPM.R |only build |only inst |only man/ForInternalUse.Rd |only man/IRT4Sselecting.Rd |only man/IRT4Sstaging.Rd |only man/JLPM-package.Rd | 5 man/REconddensity.Rd |only man/WaldMult.Rd |only man/createFargs.Rd |only man/createX0.Rd |only man/diffSojournTime.Rd |only man/jointLPM.Rd | 75 man/loglik.Rd |only man/predictRE.Rd |only man/removeNA.Rd |only man/sojournTime.Rd |only src/JLPM.h | 53 src/Makevars | 3 src/init.c | 3 src/loglik.f90 | 698 ++++++-- src/reconddensity.f90 |only vignettes |only 47 files changed, 3472 insertions(+), 2643 deletions(-)
Title: Graph Visualisation Engine Widget for R and 'shiny' Apps
Description: Create stunning network experiences powered by the 'G6' graph visualisation engine
'JavaScript' library <https://g6.antv.antgroup.com/en>. In 'shiny' mode, modify your
graph directly from the server function to dynamically interact with nodes and edges.
Select your favorite layout among 20 choices. 15 behaviors are available such as
interactive edge creation, collapse-expand and brush select.
17 plugins designed to improve the user experience such as a mini-map,
toolbars and grid lines. Customise the look and feel of your graph with comprehensive
options for nodes, edges and more.
Author: David Granjon [aut, cre],
David Schoch [aut],
cynkra GmbH [fnd],
Bristol Myers Squibb [fnd]
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between g6R versions 0.5.0 dated 2025-12-09 and 0.6.0 dated 2026-04-27
DESCRIPTION | 8 - MD5 | 66 +++++++---- NAMESPACE | 25 ++++ NEWS.md | 70 +++++++++++ R/behaviors.R | 43 ++++--- R/elements.R | 218 ++++++++++++++++++++++++++++++++++--- R/g6.R | 70 +++++++++++ R/plugins.R | 39 +++++- R/ports.R |only R/proxy.R | 189 +++++++++++++++++++++++++++++++- inst/doc/g6R.html | 14 +- inst/examples/collapse-nodes |only inst/examples/list/app.R | 49 +++----- inst/examples/ports |only inst/htmlwidgets/185.js | 2 inst/htmlwidgets/g6.js | 2 man/as_g6_port.Rd |only man/as_g6_ports.Rd |only man/create_edge.Rd | 7 - man/drag_element.Rd | 2 man/g6.Rd | 1 man/g6_collapse_options.Rd |only man/g6_element.Rd | 14 ++ man/g6_port.Rd |only man/g6_ports.Rd |only man/g6_update_ports.Rd |only man/get-ports.Rd |only man/hull.Rd | 4 man/is_g6_port.Rd |only man/set_g6_max_collapse_depth.Rd |only man/validate_edges_ports.Rd |only man/validate_port.Rd |only man/validate_ports.Rd |only tests/testthat/_snaps/behaviors.md | 64 +++++++--- tests/testthat/_snaps/elements.md | 81 +++++++++++++ tests/testthat/_snaps/layouts.md | 40 +++++- tests/testthat/_snaps/plugins.md | 56 +++++++-- tests/testthat/_snaps/ports.md |only tests/testthat/test-elements.R | 112 +++++++++++++++++++ tests/testthat/test-g6.R | 37 ++++++ tests/testthat/test-ports.R |only tests/testthat/test-proxy.R | 184 +++++++++++++++++++++++++++++++ 42 files changed, 1237 insertions(+), 160 deletions(-)
Title: Computes Diversity Indices with Archaeological Data
Description: Companion package of Arnaud Barat, Andreu Sansó, Maite Arilla-Osuna,
Ruth Blasco, Iñaki Pérez-Fernández, Gabriel Cifuentes-Alcobenda,
Rubén Llorente, Daniel Vivar-Ríos, Ella Assaf, Ran Barkai, Avi Gopher, &
Jordi Rosell-Ardèvol (2025), "Quantifying Diversity through Entropy
Decomposition. Insights into Hominin Occupation and Carcass Processing
at Qesem cave".
Author: Andreu Sanso [aut, cre],
Arnaud Barat [aut],
Jordi Rosell [aut]
Maintainer: Andreu Sanso <andreu.sanso@uib.eu>
Diff between diversityArch versions 0.1.0 dated 2025-11-25 and 0.2.0 dated 2026-04-27
diversityArch-0.1.0/diversityArch/R/margalev.R |only diversityArch-0.1.0/diversityArch/man/margalev.Rd |only diversityArch-0.2.0/diversityArch/DESCRIPTION | 8 - diversityArch-0.2.0/diversityArch/MD5 | 77 +++++----- diversityArch-0.2.0/diversityArch/NAMESPACE | 4 diversityArch-0.2.0/diversityArch/NEWS.md |only diversityArch-0.2.0/diversityArch/R/all_indices.R | 47 ++++-- diversityArch-0.2.0/diversityArch/R/bs.R |only diversityArch-0.2.0/diversityArch/R/bs_dec.R |only diversityArch-0.2.0/diversityArch/R/check_x.R |only diversityArch-0.2.0/diversityArch/R/dec_equit.R | 4 diversityArch-0.2.0/diversityArch/R/dec_shannon.R | 6 diversityArch-0.2.0/diversityArch/R/dominance.R | 11 - diversityArch-0.2.0/diversityArch/R/equitability.R | 11 - diversityArch-0.2.0/diversityArch/R/evenness.R | 4 diversityArch-0.2.0/diversityArch/R/margalef.R |only diversityArch-0.2.0/diversityArch/R/menhinick.R | 15 - diversityArch-0.2.0/diversityArch/R/shannon.R | 11 - diversityArch-0.2.0/diversityArch/R/shannon_frag.R | 16 +- diversityArch-0.2.0/diversityArch/R/simpson_D.R | 11 - diversityArch-0.2.0/diversityArch/R/simpson_E.R | 2 diversityArch-0.2.0/diversityArch/data/Qesem_f.RData |binary diversityArch-0.2.0/diversityArch/data/Qesem_s.RData |binary diversityArch-0.2.0/diversityArch/inst/CITATION | 16 +- diversityArch-0.2.0/diversityArch/man/Qesem_f.Rd | 4 diversityArch-0.2.0/diversityArch/man/Qesem_s.Rd | 4 diversityArch-0.2.0/diversityArch/man/all_indices.Rd | 14 + diversityArch-0.2.0/diversityArch/man/bs.Rd |only diversityArch-0.2.0/diversityArch/man/bs_dec.Rd |only diversityArch-0.2.0/diversityArch/man/check_x.Rd |only diversityArch-0.2.0/diversityArch/man/dec_equit.Rd | 7 diversityArch-0.2.0/diversityArch/man/dec_shannon.Rd | 8 - diversityArch-0.2.0/diversityArch/man/dominance.Rd | 4 diversityArch-0.2.0/diversityArch/man/equitability.Rd | 4 diversityArch-0.2.0/diversityArch/man/evenness.Rd | 6 diversityArch-0.2.0/diversityArch/man/margalef.Rd |only diversityArch-0.2.0/diversityArch/man/menhinick.Rd | 6 diversityArch-0.2.0/diversityArch/man/shannon.Rd | 4 diversityArch-0.2.0/diversityArch/man/shannon_frag.Rd | 10 - diversityArch-0.2.0/diversityArch/man/simpson_D.Rd | 4 diversityArch-0.2.0/diversityArch/man/simpson_E.Rd | 4 diversityArch-0.2.0/diversityArch/tests/testthat/test-dec_shannon.R | 2 diversityArch-0.2.0/diversityArch/tests/testthat/test-dominance.R | 2 diversityArch-0.2.0/diversityArch/tests/testthat/test-shannon.R | 2 diversityArch-0.2.0/diversityArch/tests/testthat/test-shannon_frag.R | 2 45 files changed, 160 insertions(+), 170 deletions(-)
More information about FrailtyCompRisk at CRAN
Permanent link
Title: Graph/Network Visualization
Description: Build graph/network structures using functions for stepwise
addition and deletion of nodes and edges. Work with data available in
tables for bulk addition of nodes, edges, and associated metadata. Use
graph selections and traversals to apply changes to specific nodes or
edges. A wide selection of graph algorithms allow for the analysis of
graphs. Visualize the graphs and take advantage of any aesthetic
properties assigned to nodes and edges.
Author: Richard Iannone [aut, cre] ,
Olivier Roy [aut]
Maintainer: Richard Iannone <riannone@me.com>
Diff between DiagrammeR versions 1.0.11 dated 2024-02-02 and 1.0.12 dated 2026-04-27
DESCRIPTION | 15 MD5 | 919 +++++++++++++++++----------------- NEWS.md | 16 R/add_balanced_tree.R | 34 - R/add_cycle.R | 26 R/add_edge.R | 54 - R/add_edge_clone.R | 43 - R/add_edge_df.R | 10 R/add_edges_from_table.R | 62 +- R/add_edges_w_string.R | 24 R/add_forward_edges_ws.R | 20 R/add_full_graph.R | 58 +- R/add_global_graph_attrs.R | 18 R/add_gnm_graph.R | 24 R/add_gnp_graph.R | 24 R/add_graph_action.R | 6 R/add_graph_to_graph_series.R | 14 R/add_grid_2d.R | 40 - R/add_grid_3d.R | 32 - R/add_growing_graph.R | 24 R/add_islands_graph.R | 24 R/add_n_node_clones.R | 28 - R/add_n_nodes.R | 12 R/add_n_nodes_ws.R | 88 +-- R/add_node.R | 56 +- R/add_node_clones_ws.R | 44 - R/add_node_df.R | 12 R/add_nodes_from_df_cols.R | 30 - R/add_nodes_from_table.R | 42 - R/add_pa_graph.R | 24 R/add_path.R | 28 - R/add_prism.R | 28 - R/add_reverse_edges_ws.R | 26 R/add_smallworld_graph.R | 28 - R/add_star.R | 28 - R/attr_themes.R | 16 R/base64.R | 4 R/clear_selection.R | 10 R/colorize_edge_attrs.R | 12 R/colorize_node_attrs.R | 32 - R/combine_graphs.R | 30 - R/copy_edge_attrs.R | 14 R/copy_node_attrs.R | 23 R/count_asymmetric_node_pairs.R | 8 R/count_automorphisms.R | 8 R/count_edges.R | 6 R/count_graphs_in_graph_series.R | 14 R/count_loop_edges.R | 4 R/count_mutual_node_pairs.R | 8 R/count_nodes.R | 6 R/count_s_connected_cmpts.R | 4 R/count_unconnected_node_pairs.R | 8 R/count_unconnected_nodes.R | 18 R/count_w_connected_cmpts.R | 6 R/create_graph.R | 10 R/create_graph_series.R | 14 R/delete_cache.R | 10 R/delete_edge.R | 52 - R/delete_edges_ws.R | 14 R/delete_global_graph_attrs.R | 20 R/delete_graph_actions.R | 34 - R/delete_loop_edges_ws.R | 18 R/delete_node.R | 20 R/delete_nodes_ws.R | 20 R/deselect_edges.R | 14 R/deselect_nodes.R | 8 R/display_metagraph.R | 86 +-- R/do_bfs.R | 12 R/do_dfs.R | 12 R/drop_edge_attrs.R | 14 R/drop_node_attrs.R | 19 R/edge_aes.R | 6 R/edge_data.R | 4 R/export_csv.R | 2 R/export_graph.R | 6 R/filter_graph_series.R | 16 R/from_adj_matrix.R | 2 R/from_igraph.R | 12 R/fully_connect_nodes_ws.R | 38 - R/fully_disconnect_nodes_ws.R | 16 R/generate_dot.R | 45 - R/get_adhesion.R | 8 R/get_agg_degree_in.R | 27 R/get_agg_degree_out.R | 24 R/get_agg_degree_total.R | 24 R/get_all_connected_nodes.R | 20 R/get_alpha_centrality.R | 14 R/get_articulation_points.R | 10 R/get_authority_centrality.R | 37 - R/get_betweenness.R | 14 R/get_cache.R | 14 R/get_closeness.R | 14 R/get_closeness_vitality.R | 12 R/get_cmty_edge_btwns.R | 12 R/get_cmty_fast_greedy.R | 12 R/get_cmty_l_eigenvec.R | 12 R/get_cmty_louvain.R | 12 R/get_cmty_walktrap.R | 12 R/get_common_nbrs.R | 6 R/get_coreness.R | 14 R/get_degree_distribution.R | 4 R/get_degree_histogram.R | 16 R/get_degree_in.R | 14 R/get_degree_out.R | 14 R/get_degree_total.R | 14 R/get_dice_similarity.R | 4 R/get_eccentricity.R | 8 R/get_edge_attrs.R | 45 - R/get_edge_attrs_ws.R | 43 - R/get_edge_count_w_multiedge.R | 14 R/get_edge_df.R | 22 R/get_edge_df_ws.R | 10 R/get_edge_ids.R | 4 R/get_edge_info.R | 6 R/get_edges.R | 24 R/get_eigen_centrality.R | 8 R/get_girth.R | 8 R/get_global_graph_attr_info.R | 2 R/get_graph_actions.R | 6 R/get_graph_from_graph_series.R | 14 R/get_graph_info.R | 6 R/get_graph_log.R | 8 R/get_graph_name.R | 2 R/get_graph_series_info.R | 16 R/get_graph_time.R | 4 R/get_jaccard_similarity.R | 4 R/get_last_edges_created.R | 36 - R/get_last_nodes_created.R | 36 - R/get_leverage_centrality.R | 22 R/get_max_eccentricity.R | 8 R/get_mean_distance.R | 8 R/get_min_cut_between.R | 20 R/get_min_eccentricity.R | 8 R/get_multiedge_count.R | 8 R/get_nbrs.R | 18 R/get_node_attrs.R | 18 R/get_node_attrs_ws.R | 16 R/get_node_df.R | 24 R/get_node_df_ws.R | 10 R/get_node_ids.R | 10 R/get_node_info.R | 4 R/get_non_nbrs.R | 4 R/get_pagerank.R | 10 R/get_paths.R | 26 R/get_periphery.R | 10 R/get_predecessors.R | 4 R/get_radiality.R | 16 R/get_reciprocity.R | 16 R/get_s_connected_cmpts.R | 31 - R/get_selection.R | 12 R/get_similar_nbrs.R | 18 R/get_successors.R | 4 R/get_w_connected_cmpts.R | 20 R/import_graph.R | 29 - R/invert_selection.R | 16 R/is_edge_loop.R | 20 R/is_edge_multiple.R | 22 R/is_edge_mutual.R | 22 R/is_edge_present.R | 14 R/is_graph_connected.R | 8 R/is_graph_dag.R | 12 R/is_graph_directed.R | 6 R/is_graph_empty.R | 6 R/is_graph_simple.R | 6 R/is_graph_undirected.R | 6 R/is_graph_weighted.R | 14 R/is_node_present.R | 8 R/is_property_graph.R | 12 R/join_edge_attrs.R | 10 R/join_node_attrs.R | 16 R/layout_nodes_w_string.R | 32 - R/mutate_edge_attrs.R | 22 R/mutate_edge_attrs_ws.R | 40 - R/mutate_node_attrs.R | 22 R/mutate_node_attrs_ws.R | 40 - R/node_aes.R | 8 R/node_data.R | 4 R/nudge_node_positions_ws.R | 34 - R/open_graph.R | 2 R/print.R | 70 +- R/recode_edge_attrs.R | 14 R/recode_node_attrs.R | 18 R/remove_graph_from_graph_series.R | 16 R/rename_edge_attrs.R | 14 R/rename_node_attrs.R | 20 R/render_graph.R | 104 +-- R/render_graph_from_graph_series.R | 12 R/reorder_graph_actions.R | 20 R/rescale_edge_attrs.R | 26 R/rescale_node_attrs.R | 28 - R/rev_edge_dir.R | 8 R/rev_edge_dir_ws.R | 22 R/save_graph.R | 4 R/select_edges.R | 26 R/select_edges_by_edge_id.R | 32 - R/select_edges_by_node_id.R | 32 - R/select_last_edges_created.R | 44 - R/select_last_nodes_created.R | 44 - R/select_nodes.R | 18 R/select_nodes_by_degree.R | 32 - R/select_nodes_by_id.R | 4 R/select_nodes_in_neighborhood.R | 12 R/set_cache.R | 16 R/set_edge_attr_to_display.R | 24 R/set_edge_attrs.R | 10 R/set_edge_attrs_ws.R | 14 R/set_graph_directed.R | 6 R/set_graph_name.R | 2 R/set_graph_time.R | 6 R/set_graph_undirected.R | 6 R/set_node_attr_to_display.R | 24 R/set_node_attr_w_fcn.R | 34 - R/set_node_attrs.R | 10 R/set_node_attrs_ws.R | 14 R/set_node_position.R | 34 - R/spectools.R | 2 R/to_igraph.R | 4 R/transform_to_complement_graph.R | 18 R/transform_to_min_spanning_tree.R | 16 R/transform_to_subgraph_ws.R | 36 - R/trav_both.R | 106 +-- R/trav_both_edge.R | 160 ++--- R/trav_in.R | 127 ++-- R/trav_in_edge.R | 104 +-- R/trav_in_node.R | 110 ++-- R/trav_in_until.R | 56 +- R/trav_out.R | 125 ++-- R/trav_out_edge.R | 94 +-- R/trav_out_node.R | 110 ++-- R/trav_out_until.R | 54 - R/trav_reverse_edge.R | 20 R/trigger_graph_actions.R | 18 R/utils.R | 106 +-- R/visnetwork.R | 4 inst/htmlwidgets/grViz.js | 5 man/add_balanced_tree.Rd | 18 man/add_cycle.Rd | 10 man/add_edge.Rd | 26 man/add_edge_clone.Rd | 29 - man/add_edge_df.Rd | 6 man/add_edges_from_table.Rd | 14 man/add_edges_w_string.Rd | 16 man/add_forward_edges_ws.Rd | 16 man/add_full_graph.Rd | 30 - man/add_global_graph_attrs.Rd | 12 man/add_gnm_graph.Rd | 6 man/add_gnp_graph.Rd | 6 man/add_graph_action.Rd | 6 man/add_graph_to_graph_series.Rd | 14 man/add_grid_2d.Rd | 10 man/add_grid_3d.Rd | 10 man/add_growing_graph.Rd | 6 man/add_islands_graph.Rd | 6 man/add_n_node_clones.Rd | 8 man/add_n_nodes.Rd | 4 man/add_n_nodes_ws.Rd | 20 man/add_node.Rd | 12 man/add_node_clones_ws.Rd | 16 man/add_node_df.Rd | 8 man/add_nodes_from_df_cols.Rd | 8 man/add_nodes_from_table.Rd | 24 man/add_pa_graph.Rd | 6 man/add_path.Rd | 12 man/add_prism.Rd | 12 man/add_reverse_edges_ws.Rd | 16 man/add_smallworld_graph.Rd | 6 man/add_star.Rd | 12 man/clear_selection.Rd | 10 man/colorize_edge_attrs.Rd | 8 man/colorize_node_attrs.Rd | 28 - man/combine_graphs.Rd | 8 man/copy_edge_attrs.Rd | 10 man/copy_node_attrs.Rd | 19 man/count_asymmetric_node_pairs.Rd | 8 man/count_automorphisms.Rd | 8 man/count_edges.Rd | 6 man/count_graphs_in_graph_series.Rd | 14 man/count_loop_edges.Rd | 4 man/count_mutual_node_pairs.Rd | 8 man/count_nodes.Rd | 6 man/count_s_connected_cmpts.Rd | 4 man/count_unconnected_node_pairs.Rd | 8 man/count_unconnected_nodes.Rd | 8 man/count_w_connected_cmpts.Rd | 6 man/create_graph.Rd | 8 man/create_graph_series.Rd | 14 man/delete_cache.Rd | 10 man/delete_edge.Rd | 28 - man/delete_edges_ws.Rd | 10 man/delete_global_graph_attrs.Rd | 12 man/delete_graph_actions.Rd | 14 man/delete_loop_edges_ws.Rd | 8 man/delete_node.Rd | 6 man/delete_nodes_ws.Rd | 10 man/deselect_edges.Rd | 12 man/deselect_nodes.Rd | 6 man/display_metagraph.Rd | 52 + man/do_bfs.Rd | 12 man/do_dfs.Rd | 12 man/drop_edge_attrs.Rd | 12 man/drop_node_attrs.Rd | 17 man/edge_aes.Rd | 4 man/edge_data.Rd | 4 man/export_csv.Rd | 2 man/export_graph.Rd | 6 man/filter_graph_series.Rd | 16 man/from_adj_matrix.Rd | 2 man/from_igraph.Rd | 12 man/fully_connect_nodes_ws.Rd | 20 man/fully_disconnect_nodes_ws.Rd | 8 man/get_adhesion.Rd | 8 man/get_agg_degree_in.Rd | 17 man/get_agg_degree_out.Rd | 14 man/get_agg_degree_total.Rd | 14 man/get_all_connected_nodes.Rd | 14 man/get_alpha_centrality.Rd | 10 man/get_articulation_points.Rd | 10 man/get_authority_centrality.Rd | 10 man/get_betweenness.Rd | 10 man/get_cache.Rd | 14 man/get_closeness.Rd | 10 man/get_closeness_vitality.Rd | 10 man/get_cmty_edge_btwns.Rd | 10 man/get_cmty_fast_greedy.Rd | 10 man/get_cmty_l_eigenvec.Rd | 10 man/get_cmty_louvain.Rd | 10 man/get_cmty_walktrap.Rd | 10 man/get_common_nbrs.Rd | 6 man/get_coreness.Rd | 10 man/get_degree_distribution.Rd | 4 man/get_degree_histogram.Rd | 4 man/get_degree_in.Rd | 10 man/get_degree_out.Rd | 10 man/get_degree_total.Rd | 10 man/get_dice_similarity.Rd | 4 man/get_eccentricity.Rd | 4 man/get_edge_attrs.Rd | 35 - man/get_edge_attrs_ws.Rd | 35 - man/get_edge_count_w_multiedge.Rd | 2 man/get_edge_df.Rd | 22 man/get_edge_df_ws.Rd | 8 man/get_edge_ids.Rd | 2 man/get_edge_info.Rd | 4 man/get_edges.Rd | 14 man/get_eigen_centrality.Rd | 4 man/get_girth.Rd | 8 man/get_global_graph_attr_info.Rd | 2 man/get_graph_actions.Rd | 6 man/get_graph_from_graph_series.Rd | 14 man/get_graph_info.Rd | 6 man/get_graph_log.Rd | 8 man/get_graph_name.Rd | 2 man/get_graph_series_info.Rd | 14 man/get_graph_time.Rd | 4 man/get_jaccard_similarity.Rd | 4 man/get_last_edges_created.Rd | 6 man/get_last_nodes_created.Rd | 6 man/get_leverage_centrality.Rd | 10 man/get_max_eccentricity.Rd | 8 man/get_mean_distance.Rd | 8 man/get_min_cut_between.Rd | 20 man/get_min_eccentricity.Rd | 8 man/get_multiedge_count.Rd | 2 man/get_nbrs.Rd | 18 man/get_node_attrs.Rd | 8 man/get_node_attrs_ws.Rd | 8 man/get_node_df.Rd | 24 man/get_node_df_ws.Rd | 8 man/get_node_ids.Rd | 8 man/get_node_info.Rd | 4 man/get_non_nbrs.Rd | 4 man/get_pagerank.Rd | 8 man/get_paths.Rd | 26 man/get_periphery.Rd | 4 man/get_predecessors.Rd | 4 man/get_radiality.Rd | 10 man/get_reciprocity.Rd | 16 man/get_s_connected_cmpts.Rd | 19 man/get_selection.Rd | 12 man/get_similar_nbrs.Rd | 16 man/get_successors.Rd | 4 man/get_w_connected_cmpts.Rd | 8 man/import_graph.Rd | 4 man/invert_selection.Rd | 8 man/is_edge_loop.Rd | 12 man/is_edge_multiple.Rd | 12 man/is_edge_mutual.Rd | 12 man/is_edge_present.Rd | 14 man/is_graph_connected.Rd | 8 man/is_graph_dag.Rd | 12 man/is_graph_directed.Rd | 6 man/is_graph_empty.Rd | 6 man/is_graph_simple.Rd | 6 man/is_graph_undirected.Rd | 6 man/is_graph_weighted.Rd | 14 man/is_node_present.Rd | 8 man/is_property_graph.Rd | 12 man/join_edge_attrs.Rd | 8 man/join_node_attrs.Rd | 14 man/layout_nodes_w_string.Rd | 18 man/mutate_edge_attrs.Rd | 20 man/mutate_edge_attrs_ws.Rd | 34 - man/mutate_node_attrs.Rd | 20 man/mutate_node_attrs_ws.Rd | 34 - man/node_aes.Rd | 6 man/node_data.Rd | 4 man/nudge_node_positions_ws.Rd | 28 - man/open_graph.Rd | 2 man/print.dgr_graph.Rd | 2 man/recode_edge_attrs.Rd | 10 man/recode_node_attrs.Rd | 14 man/remove_graph_from_graph_series.Rd | 16 man/rename_edge_attrs.Rd | 10 man/rename_node_attrs.Rd | 16 man/render_graph.Rd | 22 man/render_graph_from_graph_series.Rd | 12 man/reorder_graph_actions.Rd | 14 man/rescale_edge_attrs.Rd | 18 man/rescale_node_attrs.Rd | 20 man/rev_edge_dir.Rd | 8 man/rev_edge_dir_ws.Rd | 10 man/save_graph.Rd | 2 man/select_edges.Rd | 16 man/select_edges_by_edge_id.Rd | 26 man/select_edges_by_node_id.Rd | 26 man/select_last_edges_created.Rd | 12 man/select_last_nodes_created.Rd | 12 man/select_nodes.Rd | 16 man/select_nodes_by_degree.Rd | 28 - man/select_nodes_by_id.Rd | 4 man/select_nodes_in_neighborhood.Rd | 12 man/set_cache.Rd | 16 man/set_edge_attr_to_display.Rd | 14 man/set_edge_attrs.Rd | 8 man/set_edge_attrs_ws.Rd | 10 man/set_graph_directed.Rd | 6 man/set_graph_name.Rd | 2 man/set_graph_time.Rd | 6 man/set_graph_undirected.Rd | 6 man/set_node_attr_to_display.Rd | 14 man/set_node_attr_w_fcn.Rd | 26 man/set_node_attrs.Rd | 8 man/set_node_attrs_ws.Rd | 10 man/set_node_position.Rd | 34 - man/to_igraph.Rd | 2 man/transform_to_complement_graph.Rd | 8 man/transform_to_min_spanning_tree.Rd | 16 man/transform_to_subgraph_ws.Rd | 18 man/trav_both.Rd | 64 +- man/trav_both_edge.Rd | 72 +- man/trav_in.Rd | 89 +-- man/trav_in_edge.Rd | 74 +- man/trav_in_node.Rd | 82 +-- man/trav_in_until.Rd | 18 man/trav_out.Rd | 91 +-- man/trav_out_edge.Rd | 68 +- man/trav_out_node.Rd | 82 +-- man/trav_out_until.Rd | 18 man/trav_reverse_edge.Rd | 10 man/trigger_graph_actions.Rd | 14 tests/testthat/test-import_graph.R |only 461 files changed, 4757 insertions(+), 4669 deletions(-)
Title: Quantifying Nonlinear Dependence and Lead-Lag Dynamics via
Chatterjee's Xi
Description: Computes Chatterjee's non-parametric correlation coefficient for time series data.
It extends the original metric to time series analysis by providing the
Xi-Autocorrelation Function (Xi-ACF) and Xi-Cross-Correlation Function (Xi-CCF).
The package allows users to test for non-linear dependence using
Iterative Amplitude Adjusted Fourier Transform (IAAFT) surrogate data.
Main functions include xi_acf() and xi_ccf() for computation, along with
matrix extraction tools. Methodologies are based on Chatterjee (2021)
<doi:10.1080/01621459.2020.1758115> and surrogate data testing methods by
Schreiber and Schmitz (1996) <doi:10.1103/PhysRevLett.77.635>.
Author: Yasunori Watanabe [aut, cre]
Maintainer: Yasunori Watanabe <watanabe.yasunori@outlook.com>
Diff between xiacf versions 0.4.0 dated 2026-04-16 and 0.4.1 dated 2026-04-27
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++++-------- NAMESPACE | 2 ++ NEWS.md | 12 ++---------- R/autoplot.xi_acf.R | 12 ++++++++---- R/autoplot.xi_ccf.R | 9 ++++++--- R/extract.R |only inst/CITATION | 2 +- man/extract_xi_acf.Rd |only man/extract_xi_ccf.Rd |only src/miaaft_core.cpp | 2 -- src/xi_core.cpp | 4 ---- tests/testthat/test-extractors.R |only 13 files changed, 34 insertions(+), 35 deletions(-)
Title: Trust, but Verify
Description: Declarative template-based framework for verifying that objects
meet structural requirements, and auto-composing error messages when they do
not.
Author: Brodie Gaslam [aut, cre],
Paxdiablo [cph] ,
R Core Team [cph] ,
Michael Chirico [ctb]
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between vetr versions 0.2.21 dated 2026-04-03 and 0.2.22 dated 2026-04-27
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ inst/doc/alike.html | 18 +++++++++--------- inst/doc/vetr.html | 8 ++++---- tests/unitizer/validate.args.R | 3 ++- tests/unitizer/validate.args.unitizer/data.rds |binary 7 files changed, 28 insertions(+), 23 deletions(-)
Title: Group Animal Relocation Data by Spatial and Temporal
Relationship and Measure Intragroup Social Dynamics
Description: Detects spatial and temporal groups in GPS relocations
(Robitaille et al. (2019) <doi:10.1111/2041-210X.13215>). It can be
used to convert GPS relocations to gambit-of-the-group format to build
proximity-based social networks, and perform data-stream randomization
methods suitable for GPS data. Also provides measures of intragroup social
dynamics including distance and direction to leaders, centroids and nearest
neighbours.
Author: Alec L. Robitaille [aut, cre] ,
Quinn Webber [aut] ,
Eric Vander Wal [aut]
Maintainer: Alec L. Robitaille <robit.alec@gmail.com>
Diff between spatsoc versions 0.2.2 dated 2023-09-07 and 0.2.13 dated 2026-04-27
spatsoc-0.2.13/spatsoc/DESCRIPTION | 31 spatsoc-0.2.13/spatsoc/MD5 | 187 +- spatsoc-0.2.13/spatsoc/NAMESPACE | 18 spatsoc-0.2.13/spatsoc/NEWS.md | 359 ++++- spatsoc-0.2.13/spatsoc/R/build_lines.R | 169 -- spatsoc-0.2.13/spatsoc/R/build_polys.R | 106 - spatsoc-0.2.13/spatsoc/R/centroid_dyad.R |only spatsoc-0.2.13/spatsoc/R/centroid_fusion.R |only spatsoc-0.2.13/spatsoc/R/centroid_group.R |only spatsoc-0.2.13/spatsoc/R/direction_group.R |only spatsoc-0.2.13/spatsoc/R/direction_polarization.R |only spatsoc-0.2.13/spatsoc/R/direction_step.R |only spatsoc-0.2.13/spatsoc/R/direction_to_centroid.R |only spatsoc-0.2.13/spatsoc/R/direction_to_leader.R |only spatsoc-0.2.13/spatsoc/R/distance_to_centroid.R |only spatsoc-0.2.13/spatsoc/R/distance_to_leader.R |only spatsoc-0.2.13/spatsoc/R/dyad_id.R |only spatsoc-0.2.13/spatsoc/R/edge_alignment.R |only spatsoc-0.2.13/spatsoc/R/edge_delay.R |only spatsoc-0.2.13/spatsoc/R/edge_direction.R |only spatsoc-0.2.13/spatsoc/R/edge_dist.R | 400 +++-- spatsoc-0.2.13/spatsoc/R/edge_nn.R | 365 +++-- spatsoc-0.2.13/spatsoc/R/edge_zones.R |only spatsoc-0.2.13/spatsoc/R/fusion_id.R |only spatsoc-0.2.13/spatsoc/R/get_gbi.R | 120 - spatsoc-0.2.13/spatsoc/R/get_geometry.R |only spatsoc-0.2.13/spatsoc/R/group_lines.R | 367 ++--- spatsoc-0.2.13/spatsoc/R/group_polys.R | 480 +++---- spatsoc-0.2.13/spatsoc/R/group_pts.R | 274 ++-- spatsoc-0.2.13/spatsoc/R/group_times.R | 90 - spatsoc-0.2.13/spatsoc/R/internal.R |only spatsoc-0.2.13/spatsoc/R/leader_direction_group.R |only spatsoc-0.2.13/spatsoc/R/leader_edge_delay.R |only spatsoc-0.2.13/spatsoc/R/randomizations.R | 136 - spatsoc-0.2.13/spatsoc/R/spatsoc.R | 80 - spatsoc-0.2.13/spatsoc/build/partial.rdb |only spatsoc-0.2.13/spatsoc/build/vignette.rds |binary spatsoc-0.2.13/spatsoc/inst/doc/faq.R | 110 - spatsoc-0.2.13/spatsoc/inst/doc/faq.Rmd | 308 +++- spatsoc-0.2.13/spatsoc/inst/doc/faq.html | 591 +++++--- spatsoc-0.2.13/spatsoc/inst/doc/geometry-interface-and-spatial-measures.R |only spatsoc-0.2.13/spatsoc/inst/doc/geometry-interface-and-spatial-measures.Rmd |only spatsoc-0.2.13/spatsoc/inst/doc/geometry-interface-and-spatial-measures.html |only spatsoc-0.2.13/spatsoc/inst/doc/interspecific-interactions.R |only spatsoc-0.2.13/spatsoc/inst/doc/interspecific-interactions.Rmd |only spatsoc-0.2.13/spatsoc/inst/doc/interspecific-interactions.html |only spatsoc-0.2.13/spatsoc/inst/doc/intro.R |only spatsoc-0.2.13/spatsoc/inst/doc/intro.Rmd |only spatsoc-0.2.13/spatsoc/inst/doc/intro.html |only spatsoc-0.2.13/spatsoc/inst/doc/using-edge-and-dyad.R | 130 - spatsoc-0.2.13/spatsoc/inst/doc/using-edge-and-dyad.Rmd | 184 +- spatsoc-0.2.13/spatsoc/inst/doc/using-edge-and-dyad.html | 375 +++-- spatsoc-0.2.13/spatsoc/inst/doc/using-in-sna.R | 596 ++++---- spatsoc-0.2.13/spatsoc/inst/doc/using-in-sna.Rmd | 225 ++- spatsoc-0.2.13/spatsoc/inst/doc/using-in-sna.html | 457 ++++-- spatsoc-0.2.13/spatsoc/man/build_lines.Rd | 39 spatsoc-0.2.13/spatsoc/man/build_polys.Rd | 36 spatsoc-0.2.13/spatsoc/man/calc_centroid.Rd |only spatsoc-0.2.13/spatsoc/man/calc_direction.Rd |only spatsoc-0.2.13/spatsoc/man/calc_distance.Rd |only spatsoc-0.2.13/spatsoc/man/centroid_dyad.Rd |only spatsoc-0.2.13/spatsoc/man/centroid_fusion.Rd |only spatsoc-0.2.13/spatsoc/man/centroid_group.Rd |only spatsoc-0.2.13/spatsoc/man/diff_rad.Rd |only spatsoc-0.2.13/spatsoc/man/direction_group.Rd |only spatsoc-0.2.13/spatsoc/man/direction_polarization.Rd |only spatsoc-0.2.13/spatsoc/man/direction_step.Rd |only spatsoc-0.2.13/spatsoc/man/direction_to_centroid.Rd |only spatsoc-0.2.13/spatsoc/man/direction_to_leader.Rd |only spatsoc-0.2.13/spatsoc/man/distance_to_centroid.Rd |only spatsoc-0.2.13/spatsoc/man/distance_to_leader.Rd |only spatsoc-0.2.13/spatsoc/man/dyad_id.Rd | 20 spatsoc-0.2.13/spatsoc/man/edge_alignment.Rd |only spatsoc-0.2.13/spatsoc/man/edge_delay.Rd |only spatsoc-0.2.13/spatsoc/man/edge_direction.Rd |only spatsoc-0.2.13/spatsoc/man/edge_dist.Rd | 176 +- spatsoc-0.2.13/spatsoc/man/edge_nn.Rd | 173 +- spatsoc-0.2.13/spatsoc/man/edge_zones.Rd |only spatsoc-0.2.13/spatsoc/man/fusion_id.Rd |only spatsoc-0.2.13/spatsoc/man/get_gbi.Rd | 22 spatsoc-0.2.13/spatsoc/man/get_geometry.Rd |only spatsoc-0.2.13/spatsoc/man/group_lines.Rd | 51 spatsoc-0.2.13/spatsoc/man/group_polys.Rd | 44 spatsoc-0.2.13/spatsoc/man/group_pts.Rd | 107 + spatsoc-0.2.13/spatsoc/man/group_times.Rd | 13 spatsoc-0.2.13/spatsoc/man/leader_direction_group.Rd |only spatsoc-0.2.13/spatsoc/man/leader_edge_delay.Rd |only spatsoc-0.2.13/spatsoc/man/randomizations.Rd | 14 spatsoc-0.2.13/spatsoc/man/spatsoc.Rd | 83 + spatsoc-0.2.13/spatsoc/tests/testthat/test-assert.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-build-lines.R | 84 - spatsoc-0.2.13/spatsoc/tests/testthat/test-build-polys.R | 71 - spatsoc-0.2.13/spatsoc/tests/testthat/test-calc-centroid.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-calc-direction.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-calc-distance.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-centroid-dyad.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-centroid-fusion.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-centroid-group.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-diff-rad.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-direction-group.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-direction-polarization.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-direction-step.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-direction-to-centroid.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-direction-to-leader.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-distance-to-centroid.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-distance-to-leader.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-dyad-id.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-edge-alignment.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-edge-delay.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-edge-direction.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-edge-dist.R | 682 +++++++--- spatsoc-0.2.13/spatsoc/tests/testthat/test-edge-nn.R | 603 ++++++-- spatsoc-0.2.13/spatsoc/tests/testthat/test-edge-zones.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-fusion-id.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-get-gbi.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-get-geometry.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-group-lines.R | 98 - spatsoc-0.2.13/spatsoc/tests/testthat/test-group-polys.R | 105 - spatsoc-0.2.13/spatsoc/tests/testthat/test-group-pts.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-group-times.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-leader-direction-group.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-leader-edge-delay.R |only spatsoc-0.2.13/spatsoc/tests/testthat/test-randomizations.R |only spatsoc-0.2.13/spatsoc/vignettes/faq.Rmd | 308 +++- spatsoc-0.2.13/spatsoc/vignettes/geometry-interface-and-spatial-measures.Rmd |only spatsoc-0.2.13/spatsoc/vignettes/interspecific-interactions.Rmd |only spatsoc-0.2.13/spatsoc/vignettes/intro.Rmd |only spatsoc-0.2.13/spatsoc/vignettes/using-edge-and-dyad.Rmd | 184 +- spatsoc-0.2.13/spatsoc/vignettes/using-in-sna.Rmd | 225 ++- spatsoc-0.2.2/spatsoc/R/dyads.R |only spatsoc-0.2.2/spatsoc/inst/doc/additional-data-formats.R |only spatsoc-0.2.2/spatsoc/inst/doc/additional-data-formats.Rmd |only spatsoc-0.2.2/spatsoc/inst/doc/additional-data-formats.html |only spatsoc-0.2.2/spatsoc/inst/doc/intro-spatsoc.R |only spatsoc-0.2.2/spatsoc/inst/doc/intro-spatsoc.Rmd |only spatsoc-0.2.2/spatsoc/inst/doc/intro-spatsoc.html |only spatsoc-0.2.2/spatsoc/tests/testthat/test-dyad.R |only spatsoc-0.2.2/spatsoc/tests/testthat/test-gbi.R |only spatsoc-0.2.2/spatsoc/tests/testthat/test-pts.R |only spatsoc-0.2.2/spatsoc/tests/testthat/test-random.R |only spatsoc-0.2.2/spatsoc/tests/testthat/test-time.R |only spatsoc-0.2.2/spatsoc/vignettes/additional-data-formats.Rmd |only spatsoc-0.2.2/spatsoc/vignettes/intro-spatsoc.Rmd |only 143 files changed, 5775 insertions(+), 3521 deletions(-)
Title: Safetensors File Format
Description: A file format for storing tensors that is secure (doesn't allow for
code execution), fast and simple to implement. 'safetensors' also enables cross
language and cross frameworks compatibility making it an ideal format for
storing machine learning model weights.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [aut],
Sebastian Fischer [ctb],
Posit [cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between safetensors versions 0.2.0 dated 2025-08-18 and 0.2.1 dated 2026-04-27
safetensors-0.2.0/safetensors/tests/testthat/safetensors/hello2.safetensors |only safetensors-0.2.1/safetensors/DESCRIPTION | 16 +++++----- safetensors-0.2.1/safetensors/MD5 | 7 +--- safetensors-0.2.1/safetensors/NEWS.md | 4 ++ safetensors-0.2.1/safetensors/README.md | 2 - 5 files changed, 17 insertions(+), 12 deletions(-)
Title: Standardize Dates in Different Formats or with Missing Data
Description: There are many different formats dates are commonly
represented with: the order of day, month, or year can differ,
different separators ("-", "/", or whitespace) can be used, months can
be numerical, names, or abbreviations and year given as two digits or
four. 'datefixR' takes dates in all these different formats and
converts them to R's built-in date class. If 'datefixR' cannot
standardize a date, such as because it is too malformed, then the user
is told which date cannot be standardized and the corresponding ID for
the row. 'datefixR' also allows the imputation of missing days and
months with user-controlled behavior.
Author: Nathan Constantine-Cooke [aut, cre] ,
Jonathan Kitt [ctb, trl],
Antonio J. Perez-Luque [ctb, trl] ,
Daniel Possenriede [ctb, trl] ,
Michal Lauer [ctb, trl],
Kaique dos S. Alves [rev] ,
Al-Ahmadgaid B. Asaad [rev] ,
Anatoly Tsyplenkov [ctb, trl] ,
Chi [...truncated...]
Maintainer: Nathan Constantine-Cooke <nathan.constantine-cooke@ed.ac.uk>
Diff between datefixR versions 2.0.0 dated 2025-08-22 and 2.0.1 dated 2026-04-27
DESCRIPTION | 18 +- MD5 | 52 ++++---- NEWS.md | 20 +++ R/fix_date_char.R | 13 +- R/fix_date_df.R | 19 +- README.md | 30 +++- build/vignette.rds |binary inst/WORDLIST | 6 inst/doc/datefixR.html | 7 - inst/doc/internationalization.html | 2 src/Makevars.in | 2 src/rust/Cargo.lock | 172 +++++++++++++-------------- src/rust/Cargo.toml | 20 ++- src/rust/src/lib.rs | 87 +++++++------ src/rust/src/optimizations.rs | 9 - src/rust/vendor.tar.xz |binary tests/testthat/_snaps/mac-4.5/app_1/001.json | 4 tests/testthat/_snaps/mac-4.5/app_1/001_.png |binary tests/testthat/_snaps/mac-4.5/app_1/003.json | 4 tests/testthat/_snaps/mac-4.5/app_1/003_.png |binary tests/testthat/_snaps/shiny/app_1/001.json | 4 tests/testthat/_snaps/shiny/app_1/001_.png |binary tests/testthat/_snaps/shiny/app_1/003.json | 4 tests/testthat/_snaps/shiny/app_1/003_.png |binary tests/testthat/test_fix_date_char.R | 28 ++++ tests/testthat/test_fix_date_df.R | 19 ++ tools/config.R | 12 + 27 files changed, 324 insertions(+), 208 deletions(-)
Title: Write Events for 'TensorBoard'
Description: Provides a convenient way to log scalars, images, audio, and histograms in the 'tfevent' record file format.
Logged data can be visualized on the fly using 'TensorBoard', a web based tool that focuses on visualizing the training
progress of machine learning models.
Author: Daniel Falbel [aut, cph],
Tomasz Kalinowski [cre],
Posit, PBC [cph],
The tl::optional authors [cph] ,
Mark Adler [cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between tfevents versions 0.0.4 dated 2024-06-27 and 0.0.5 dated 2026-04-27
DESCRIPTION | 16 +++++++++------- MD5 | 26 +++++++++++++------------- NAMESPACE | 4 ++++ NEWS.md | 4 ++++ R/audio.R | 2 +- R/tensor.R | 4 ++++ README.md | 2 +- configure | 13 ++++++++++--- man/summary_audio.Rd | 2 ++ src/reader.cpp | 2 +- tests/testthat/helper-tbparse.R | 6 ++++++ tests/testthat/test-audio.R | 2 ++ tests/testthat/test-image.R | 1 + tests/testthat/test-read.R | 1 + 14 files changed, 59 insertions(+), 26 deletions(-)
Title: Read and Write 'jamovi' Files ('.omv')
Description: The free and open a statistical spreadsheet 'jamovi'
(<https://www.jamovi.org>) aims to make statistical analyses easy and
intuitive. 'jamovi' produces syntax that can directly be used in R (in
connection with the R-package 'jmv'). Having import / export routines for
the data files 'jamovi' produces ('.omv') permits an easy transfer of
data and analyses between 'jamovi' and R.
Author: Sebastian Jentschke [aut, cre, cph]
Maintainer: Sebastian Jentschke <sebastian.jentschke@uib.no>
This is a re-admission after prior archival of version 0.4.12 dated 2025-09-12
Diff between jmvReadWrite versions 0.4.12 dated 2025-09-12 and 0.4.13 dated 2026-04-27
DESCRIPTION | 8 - MD5 | 42 ++++---- NEWS.md | 14 ++ R/aggregate_omv.R | 17 ++- R/describe_omv.R | 171 +++++++++++++++++++++++++++++--- R/globals.R | 4 R/label_vars_omv.R | 21 ++-- R/write_omv.R | 9 + README.md | 8 + build/vignette.rds |binary inst/CITATION | 4 inst/doc/jmvReadWrite.Rmd | 5 inst/doc/jmvReadWrite.html | 11 +- man/aggregate_omv.Rd | 3 man/describe_omv.Rd | 23 ++-- man/write_omv.Rd | 9 + tests/testthat/test-aggregate_omv.R | 44 +++++++- tests/testthat/test-describe_omv.R | 182 +++++++++++++++++++++++++++++++++++ tests/testthat/test-label_vars_omv.R | 5 tests/testthat/test-read_omv.R | 65 +++++++----- tests/testthat/test-write_omv.R | 10 + vignettes/jmvReadWrite.Rmd | 5 22 files changed, 545 insertions(+), 115 deletions(-)
Title: 'DataSHIELD' 'Tidyverse' Server-Side Package
Description: Implementation of selected 'Tidyverse' functions within 'DataSHIELD', an open-source federated analysis solution in R. Currently, DataSHIELD contains very limited tools for data manipulation, so the aim of this package is to improve the researcher experience by implementing essential functions for data manipulation, including subsetting, filtering, grouping, and renaming variables. This is the server-side package which should be installed on the server holding the data, and is used in conjunction with the client-side package 'dsTidyverseClient' which is installed in the local R environment of the analyst. For more information, see <https://tidyverse.org/> and <https://datashield.org/>.
Author: Tim Cadman [aut, cre] ,
Mariska Slofstra [aut] ,
Stuart Wheater [aut],
Demetris Avraam [aut]
Maintainer: Tim Cadman <t.j.cadman@umcg.nl>
Diff between dsTidyverse versions 1.1.1 dated 2025-12-15 and 1.2.1 dated 2026-04-27
DESCRIPTION | 15 ++--- MD5 | 76 +++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 6 ++ R/arrangeDS.R | 2 R/caseWhenDS.R | 2 R/distinctDS.R | 2 R/filterDS.R | 2 R/groupByDS.R | 4 - R/groupKeysDS.R | 2 R/ifElseDS.R | 2 R/mutateDS.R | 4 - R/renameDS.R | 2 R/selectDS.R | 2 R/sliceDS.R | 2 R/utils.R | 44 +++++++++++++---- README.md | 4 - inst/doc/tidyversePrivacy.Rmd | 2 inst/doc/tidyversePrivacy.html | 2 man/arrangeDS.Rd | 2 man/caseWhenDS.Rd | 2 man/checkPermissivePrivacyControlLevel.Rd | 2 man/distinctDS.Rd | 2 man/filterDS.Rd | 2 man/groupByDS.Rd | 2 man/groupKeysDS.Rd | 2 man/ifElseDS.Rd | 2 man/listPermittedTidyverseFunctionsDS.Rd | 2 man/mutateDS.Rd | 2 man/renameDS.Rd | 2 man/selectDS.Rd | 2 man/sliceDS.Rd | 2 man/ungroupDS.Rd | 2 tests/testthat/_snaps/utils.md | 6 +- tests/testthat/helpers.R | 2 tests/testthat/test-mutateDS.R | 25 +++++++++ tests/testthat/test-utils.R | 35 +++++++++++-- vignettes/tidyversePrivacy.Rmd | 2 vignettes/tidyversePrivacy.Rmd.orig | 2 39 files changed, 177 insertions(+), 99 deletions(-)
Title: 'DataSHIELD' RO-Crate Governance Functions
Description: Tools for wrapping 'DataSHIELD' analyses into RO-Crate
(Research Object Crate) objects. Provides functions to create structured
metadata for federated data analysis projects, enabling governance
tracking of data access, project membership, analysis execution and
output validation across distributed data sources.
Author: Roberto Villegas-Diaz [aut, cre] ,
Becca Wilson [aut] ,
Olly Butters [aut] ,
Stuart Wheater [aut] ,
University of Liverpool [cph]
Maintainer: Roberto Villegas-Diaz <r.villegas-diaz@outlook.com>
Diff between dsROCrate versions 0.0.1 dated 2026-04-21 and 0.0.2 dated 2026-04-27
DESCRIPTION | 6 MD5 | 16 NEWS.md | 7 R/safe_output.R | 3 README.md | 1 inst/doc/getting-started.R | 6 inst/doc/getting-started.Rmd | 6 inst/doc/getting-started.html | 9281 +++++------------------------------------- vignettes/getting-started.Rmd | 6 9 files changed, 1143 insertions(+), 8189 deletions(-)
Title: Dynamic Copula VAR Models for Time-Varying Dependence
Description: Fits Bayesian copula vector autoregressive models for bivariate
time series with dynamic, regime-switching, and constant dependence
structures. The package includes simulation, data preparation,
estimation with 'Stan' through 'rstan' or 'cmdstanr', posterior
summaries, diagnostics, trajectory extraction, fitted and predictive
summaries, and approximate leave-one-out cross-validation model
comparison for supported fits. For Bayesian computation and model
comparison, see Carpenter et al. (2017)
<doi:10.18637/jss.v076.i01> and Vehtari, Gelman and Gabry (2017)
<doi:10.1007/s11222-016-9696-4>.
Author: Benedikt Lugauer [aut, cre]
Maintainer: Benedikt Lugauer <benedikt.lugauer@uni-leipzig.de>
Diff between dcvar versions 0.1.0 dated 2026-04-22 and 0.2.0 dated 2026-04-27
DESCRIPTION | 8 MD5 | 111 +++++++----- NAMESPACE | 21 ++ NEWS.md | 20 ++ R/backend.R | 8 R/constant_fit-class.R | 43 +++- R/covariate_fit-class.R |only R/data-preparation.R | 95 +++++++--- R/dcvar-package.R | 20 -- R/diagnostics.R | 50 ++++- R/extract.R | 244 +++++++++++++++++++++++++-- R/fit-constant.R | 24 ++ R/fit-covariate.R |only R/fit-multilevel.R | 44 +++- R/fit-sem.R | 43 +++- R/loo.R | 32 ++- R/margins.R | 70 +++++++ R/multilevel_fit-class.R | 21 +- R/pit.R | 2 R/plot.R | 18 + R/predict.R | 90 ++++++++- R/sem_fit-class.R | 26 ++ R/stan-utils.R | 46 +++-- R/utils.R | 100 ++++++++++- R/zzz.R | 2 README.md | 52 +++-- inst/CITATION | 2 inst/doc/getting-started.R | 8 inst/doc/getting-started.Rmd | 9 inst/doc/getting-started.html | 166 +++++++++--------- inst/doc/model-comparison.html | 3 inst/doc/simulation-tools.html | 7 inst/stan/constant_NCl.stan |only inst/stan/dcvar_covariate_ncp.stan |only inst/stan/dcvar_covariate_nodrift.stan |only inst/stan/functions/clayton_copula.stan |only inst/stan/multilevel_EG.stan |only inst/stan/sem_naive_EG.stan |only inst/stan/sem_naive_NG.stan |only man/covariate_effects.Rd |only man/dcvar-package.Rd | 18 - man/dcvar_constant.Rd | 5 man/dcvar_covariate.Rd |only man/dcvar_covariate_fit-methods.Rd |only man/dcvar_multilevel.Rd | 15 + man/dcvar_sem.Rd | 23 +- man/dcvar_stan_path.Rd | 14 + man/dependence_summary.Rd |only man/fitted.dcvar_model_fit.Rd | 9 man/loo.dcvar.Rd | 12 - man/pit_test.Rd | 2 man/predict.dcvar_model_fit.Rd | 8 man/prepare_dcvar_covariate_data.Rd |only man/prepare_multilevel_data.Rd | 10 - man/prepare_sem_data.Rd | 12 - man/print.dcvar_covariate_summary.Rd |only man/rho_trajectory.Rd | 7 tests/testthat/test-constant-clayton.R |only tests/testthat/test-convergence.R | 2 tests/testthat/test-covariate.R |only tests/testthat/test-loo-compare.R | 4 tests/testthat/test-margins.R | 18 + tests/testthat/test-multilevel-exponential.R |only tests/testthat/test-sem-naive.R |only tests/testthat/test-stan-utils.R | 12 + vignettes/getting-started.Rmd | 9 66 files changed, 1212 insertions(+), 353 deletions(-)
Title: Interface to the API 'Sede Electronica Del Catastro'
Description: Access public spatial data available under the 'INSPIRE'
directive. Tools for downloading references and addresses of
properties, as well as map images.
Author: Angel Delgado Panadero [aut, cph] ,
Inaki Ucar [ctb] ,
Diego Hernangomez [aut, cre]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between CatastRo versions 1.0.0 dated 2026-02-23 and 1.0.1 dated 2026-04-27
DESCRIPTION | 8 MD5 | 174 +++---- NEWS.md | 127 ++--- R/atom-ad-db.R | 342 ++++++------- R/atom-ad.R | 404 ++++++++-------- R/atom-bu-db.R | 15 R/atom-bu.R | 4 R/atom-cp-db.R | 15 R/atom-cp.R | 2 R/atom-search.R | 1 R/cache-utils.R | 745 +++++++++++++++--------------- R/catr-code-coords.R | 209 ++++---- R/data.R | 145 ++--- R/ovc-cpmrc.R | 13 R/ovc-munic.R | 306 ++++++------ R/ovc-provinces.R | 5 R/ovc-rccoor-dist.R | 19 R/ovc-rccoor.R | 7 R/run-example.R | 23 R/utils-atom.R | 9 R/utils-sf.R | 18 R/utils-url.R | 419 ++++++++-------- R/utils-wfs.R | 22 R/utils.R | 15 R/wfs-ad.R | 6 R/wfs-cp.R | 4 R/wms-all.R | 6 README.md | 82 +-- build/vignette.rds |binary data/catr_srs_values.rda |binary inst/WORDLIST | 3 inst/doc/CatastRo.html | 29 - inst/doc/CatastRo.qmd | 55 +- inst/doc/ovcservice.html | 13 inst/doc/ovcservice.qmd | 27 - inst/schemaorg.json | 4 man/CatastRo-package.Rd | 1 man/catr_atom_get_address.Rd | 72 +- man/catr_atom_get_address_db.Rd | 79 +-- man/catr_atom_get_buildings.Rd | 76 +-- man/catr_atom_get_buildings_db.Rd | 79 +-- man/catr_atom_get_parcels.Rd | 74 +- man/catr_atom_get_parcels_db.Rd | 79 +-- man/catr_atom_search_munic.Rd | 49 + man/catr_clear_cache.Rd | 22 man/catr_get_code_from_coords.Rd | 41 - man/catr_ovc_get_cod_munic.Rd | 31 - man/catr_ovc_get_cod_provinces.Rd | 19 man/catr_ovc_get_cpmrc.Rd | 31 - man/catr_ovc_get_rccoor.Rd | 35 - man/catr_ovc_get_rccoor_distancia.Rd | 39 - man/catr_set_cache_dir.Rd | 49 + man/catr_srs_values.Rd | 38 - man/catr_wfs_get_address.Rd | 64 +- man/catr_wfs_get_buildings.Rd | 68 +- man/catr_wfs_get_parcels.Rd | 70 +- man/catr_wms_get_layer.Rd | 58 +- man/inspire_wfs_get.Rd | 46 - man/run_example.Rd | 10 tests/testthat/_snaps/atom-ad-db.md | 138 ++--- tests/testthat/_snaps/atom-ad.md | 96 +-- tests/testthat/_snaps/atom-bu-db.md | 138 ++--- tests/testthat/_snaps/atom-bu.md | 98 +-- tests/testthat/_snaps/atom-cp-db.md | 138 ++--- tests/testthat/_snaps/atom-cp.md | 96 +-- tests/testthat/_snaps/atom-search.md | 80 +-- tests/testthat/_snaps/cache-utils.md | 16 tests/testthat/_snaps/catr-code-coords.md | 92 +-- tests/testthat/_snaps/ovc-cpmrc.md | 34 - tests/testthat/_snaps/ovc-munic.md | 50 +- tests/testthat/_snaps/ovc-provinces.md | 34 - tests/testthat/_snaps/ovc-rccoor-dist.md | 34 - tests/testthat/_snaps/ovc-rccoor.md | 34 - tests/testthat/_snaps/utils-sf.md | 32 - tests/testthat/_snaps/utils-url.md | 52 +- tests/testthat/_snaps/utils-wfs.md | 108 ++-- tests/testthat/_snaps/utils.md | 218 ++++---- tests/testthat/_snaps/wfs-ad.md | 100 ++-- tests/testthat/test-atom-search.R | 1 tests/testthat/test-ovc-cpmrc.R | 1 tests/testthat/test-ovc-munic.R | 1 tests/testthat/test-ovc-provinces.R | 1 tests/testthat/test-ovc-rccoor.R | 1 tests/testthat/test-utils-sf.R | 1 tests/testthat/test-utils-url.R | 1 tests/testthat/test-wfs-bu.R | 1 vignettes/CatastRo.qmd | 55 +- vignettes/ovcservice.qmd | 27 - 88 files changed, 3058 insertions(+), 3026 deletions(-)
Title: Less Code with More Comprehensive Results
Description: Each function replaces multiple standard R functions. For example,
two function calls, Read() and CountAll(), generate summary statistics for
all variables in the data frame, plus histograms and bar charts. Other
functions provide data aggregation via pivot tables; comprehensive
regression, ANOVA, and t-test; visualizations including integrated
Violin/Box/Scatter plot for a numerical variable, bar chart, histogram,
box plot, density curves, calibrated power curve; reading multiple data
formats with the same call; variable labels; time series with aggregation
and forecasting; color themes; and Trellis (facet) graphics. Also includes
a confirmatory factor analysis of multiple-indicator measurement models,
pedagogical routines for data simulation (e.g., Central Limit Theorem),
generation and rendering of regression instructions for interpretative output,
and both interactive construction of visualizations and interactive
visualizations with plotly.
Author: David W. Gerbing [aut, cre]
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.5.3 dated 2026-03-26 and 4.5.4 dated 2026-04-27
lessR-4.5.3/lessR/inst/doc/Chart.R |only lessR-4.5.3/lessR/inst/doc/Chart.Rmd |only lessR-4.5.3/lessR/inst/doc/Chart.html |only lessR-4.5.3/lessR/inst/doc/Customize.R |only lessR-4.5.3/lessR/inst/doc/Customize.Rmd |only lessR-4.5.3/lessR/inst/doc/Customize.html |only lessR-4.5.3/lessR/inst/doc/Extract.R |only lessR-4.5.3/lessR/inst/doc/Extract.Rmd |only lessR-4.5.3/lessR/inst/doc/Extract.html |only lessR-4.5.3/lessR/inst/doc/FactorAnalysis.R |only lessR-4.5.3/lessR/inst/doc/FactorAnalysis.Rmd |only lessR-4.5.3/lessR/inst/doc/FactorAnalysis.html |only lessR-4.5.3/lessR/inst/doc/Means.R |only lessR-4.5.3/lessR/inst/doc/Means.Rmd |only lessR-4.5.3/lessR/inst/doc/Means.html |only lessR-4.5.3/lessR/inst/doc/Proportions.R |only lessR-4.5.3/lessR/inst/doc/Proportions.Rmd |only lessR-4.5.3/lessR/inst/doc/Proportions.html |only lessR-4.5.3/lessR/inst/doc/ReadWrite.R |only lessR-4.5.3/lessR/inst/doc/ReadWrite.Rmd |only lessR-4.5.3/lessR/inst/doc/ReadWrite.html |only lessR-4.5.3/lessR/inst/doc/Regression.R |only lessR-4.5.3/lessR/inst/doc/Regression.Rmd |only lessR-4.5.3/lessR/inst/doc/Regression.html |only lessR-4.5.3/lessR/inst/doc/Time.R |only lessR-4.5.3/lessR/inst/doc/Time.Rmd |only lessR-4.5.3/lessR/inst/doc/Time.html |only lessR-4.5.3/lessR/inst/doc/X.R |only lessR-4.5.3/lessR/inst/doc/X.Rmd |only lessR-4.5.3/lessR/inst/doc/X.html |only lessR-4.5.3/lessR/inst/doc/XY.R |only lessR-4.5.3/lessR/inst/doc/XY.Rmd |only lessR-4.5.3/lessR/inst/doc/XY.html |only lessR-4.5.3/lessR/inst/doc/pivot.R |only lessR-4.5.3/lessR/inst/doc/pivot.Rmd |only lessR-4.5.3/lessR/inst/doc/pivot.html |only lessR-4.5.3/lessR/inst/doc/utilities.R |only lessR-4.5.3/lessR/inst/doc/utilities.Rmd |only lessR-4.5.3/lessR/inst/doc/utilities.html |only lessR-4.5.3/lessR/vignettes/Chart.Rmd |only lessR-4.5.3/lessR/vignettes/Customize.Rmd |only lessR-4.5.3/lessR/vignettes/Extract.Rmd |only lessR-4.5.3/lessR/vignettes/FactorAnalysis.Rmd |only lessR-4.5.3/lessR/vignettes/Means.Rmd |only lessR-4.5.3/lessR/vignettes/Proportions.Rmd |only lessR-4.5.3/lessR/vignettes/ReadWrite.Rmd |only lessR-4.5.3/lessR/vignettes/Regression.Rmd |only lessR-4.5.3/lessR/vignettes/Time.Rmd |only lessR-4.5.3/lessR/vignettes/X.Rmd |only lessR-4.5.3/lessR/vignettes/XY.Rmd |only lessR-4.5.3/lessR/vignettes/pivot.Rmd |only lessR-4.5.3/lessR/vignettes/utilities.Rmd |only lessR-4.5.4/lessR/DESCRIPTION | 12 lessR-4.5.4/lessR/MD5 | 116 ++----- lessR-4.5.4/lessR/NEWS.md | 24 + lessR-4.5.4/lessR/R/Chart.R | 283 +++++++++++++---- lessR-4.5.4/lessR/R/Regression.R | 2 lessR-4.5.4/lessR/R/X.R | 15 lessR-4.5.4/lessR/R/XY.R | 35 +- lessR-4.5.4/lessR/R/bc.data.frame.R | 2 lessR-4.5.4/lessR/R/bc.main.R | 49 +-- lessR-4.5.4/lessR/R/bc.plotly.R | 18 - lessR-4.5.4/lessR/R/bubble.plotly.R | 39 +- lessR-4.5.4/lessR/R/dot.plotly.R | 321 ++++++++++++++++---- lessR-4.5.4/lessR/R/hier.plotly.R | 211 ++++++++----- lessR-4.5.4/lessR/R/hst.main.R | 4 lessR-4.5.4/lessR/R/param.VBS.R | 2 lessR-4.5.4/lessR/R/plt.forecast.R | 6 lessR-4.5.4/lessR/R/plt.main.R | 42 +- lessR-4.5.4/lessR/R/plt.time.R | 2 lessR-4.5.4/lessR/R/radar.plotly.R | 31 + lessR-4.5.4/lessR/R/ss.numeric.R | 16 lessR-4.5.4/lessR/R/stats.R | 16 lessR-4.5.4/lessR/R/style.R | 6 lessR-4.5.4/lessR/R/zzz.R | 115 +++---- lessR-4.5.4/lessR/R/zzz_plotly.R | 5 lessR-4.5.4/lessR/build/vignette.rds |binary lessR-4.5.4/lessR/data/dataStockPrice.rda |binary lessR-4.5.4/lessR/inst/doc/intro.R |only lessR-4.5.4/lessR/inst/doc/intro.Rmd |only lessR-4.5.4/lessR/inst/doc/intro.html |only lessR-4.5.4/lessR/inst/shiny_apps/BarChart/app.R | 133 ++------ lessR-4.5.4/lessR/inst/shiny_apps/ScatterPlot/app.R | 10 lessR-4.5.4/lessR/man/Chart.Rd | 36 +- lessR-4.5.4/lessR/man/X.Rd | 5 lessR-4.5.4/lessR/man/XY.Rd | 13 lessR-4.5.4/lessR/vignettes/intro.Rmd |only 87 files changed, 1004 insertions(+), 565 deletions(-)
Title: Automated Topic Labeling with Language Models
Description: Leveraging (large) language models for automatic topic labeling. The main function converts a list of top terms into a label for each topic. Hence, it is complementary to any topic modeling package that produces a list of top terms for each topic. While human judgement is indispensable for topic validation (i.e., inspecting top terms and most representative documents), automatic topic labeling can be a valuable tool for researchers in various scenarios.
Author: Jonas Rieger [aut, cre] ,
Fritz Peters [aut] ,
Andreas Fischer [aut] ,
Tim Lauer [aut] ,
Andre Bittermann [aut]
Maintainer: Jonas Rieger <rieger@statistik.tu-dortmund.de>
Diff between topiclabels versions 0.3.0 dated 2025-10-27 and 0.4.0 dated 2026-04-27
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 28 ++++++++++++++-------------- R/helpers.R | 4 ++-- R/label_topics.R | 6 +++--- man/label_topics.Rd | 6 +++--- 6 files changed, 31 insertions(+), 31 deletions(-)
Title: Analysis of Visual Meteor Data
Description: Provides a suite of analytical functionalities to process and analyze
visual meteor observations from the Visual Meteor Database
of the International Meteor Organization <https://www.imo.net/>.
Author: Janko Richter [aut, cre]
Maintainer: Janko Richter <janko@richtej.de>
Diff between vismeteor versions 2.0.2 dated 2026-01-09 and 2.1.0 dated 2026-04-27
DESCRIPTION | 13 MD5 | 38 +- NAMESPACE | 2 NEWS.md | 13 R/freq.R | 2 R/load_data.R | 719 ++++++++++++++++------------------------ R/mideal.R | 8 R/vmgeom.R | 8 R/vmideal.R | 10 R/vmideal_vst.R | 2 inst/doc/vismeteor.html | 6 inst/doc/vmgeom.html | 12 inst/doc/vmideal.html | 10 man/load_vmdb.Rd | 108 +++--- man/mideal.Rd | 8 man/vmideal.Rd | 2 tests/testthat/fixtures |only tests/testthat/test_load_vmdb.R | 401 +++++++++------------- tests/testthat/test_per_2015.R | 20 - 19 files changed, 589 insertions(+), 793 deletions(-)
Title: Descriptive Statistics, Summary Tables, and Data Management
Tools
Description: Provides tools for descriptive data analysis,
variable inspection, data management, and tabulation workflows in 'R'.
Summarizes variable metadata, labels, classes, missing values, and
representative values, with support for readable frequency tables,
cross-tabulations, association measures for contingency tables
(Cramer's V, Phi, Goodman-Kruskal Gamma, Kendall's Tau-b, Somers' D,
and others), categorical and continuous summary tables, and
model-based bivariate tables for continuous outcomes, including
APA-style reporting outputs. Includes helpers for interactive
codebooks, variable label extraction, clipboard export, and row-wise
descriptive summaries. Designed to make descriptive analysis and
reporting faster, clearer, and easier to work with in practice.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.9.0 dated 2026-04-20 and 0.10.0 dated 2026-04-27
DESCRIPTION | 6 MD5 | 65 NAMESPACE | 6 NEWS.md | 46 R/code_book-filename.R |only R/code_book-validation.R |only R/code_book.R | 124 - R/freq.R | 170 + R/freq_print.R | 12 R/mean_n.R | 15 R/spicy-package.R | 4 R/sum_n.R | 15 R/table_continuous.R | 13 R/table_continuous_lm.R | 3573 ++++++++++++++++----------------- R/varlist-title.R |only R/varlist-validation.R |only R/varlist-values.R |only R/varlist.R | 478 +--- README.md | 56 build/vignette.rds |binary inst/doc/summary-tables-reporting.html | 108 inst/doc/variable-exploration.R | 11 inst/doc/variable-exploration.Rmd | 20 inst/doc/variable-exploration.html | 21 man/code_book.Rd | 99 man/freq.Rd | 41 man/mean_n.Rd | 4 man/sum_n.Rd | 4 man/table_continuous.Rd | 4 man/table_continuous_lm.Rd | 4 man/varlist.Rd | 127 - tests/testthat/test-code_book.R | 374 +++ tests/testthat/test-freq.R | 450 ++++ tests/testthat/test-freq_print.R | 25 tests/testthat/test-varlist.R | 364 +++ vignettes/variable-exploration.Rmd | 20 36 files changed, 3781 insertions(+), 2478 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in
parallel, so metadata resolution and package downloads are fast.
Metadata and package files are cached on the local disk as well. 'pak'
has a dependency solver, so it finds version conflicts before
performing the installation. This version of 'pak' supports CRAN,
'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Posit Software, PBC [cph, fnd] ,
Winston Chang [ctb] ,
Ascent Digital Services [cph, fnd] ,
Hadley Wickham [ctb, cph] ,
Jeroen Ooms [ctb] ,
Maelle Salmon [ctb] ,
Duncan Temple Lang [ctb] ,
Lloyd Hilaiel [cph [...truncated...]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.9.4 dated 2026-04-17 and 0.9.5 dated 2026-04-27
DESCRIPTION | 8 ++-- MD5 | 58 ++++++++++++++++---------------- NEWS.md | 7 +++ R/lockfile.R | 5 ++ R/package.R | 16 +++++--- R/utils.R | 2 - R/warn-loaded.R | 2 - man/lib_status.Rd | 2 - man/local_deps.Rd | 2 - man/local_deps_explain.Rd | 2 - man/local_install.Rd | 22 +++++++----- man/local_install_deps.Rd | 24 ++++++++----- man/local_install_dev_deps.Rd | 24 ++++++++----- man/local_package_trees.Rd | 4 +- man/lockfile_create.Rd | 13 +++---- man/lockfile_install.Rd | 2 - man/pak.Rd | 6 +-- man/pak_sitrep.Rd | 2 - man/pkg_download.Rd | 2 - man/pkg_install.Rd | 22 +++++++----- man/pkg_remove.Rd | 2 - man/pkg_status.Rd | 2 - man/pkg_sysreqs.Rd | 2 - src/library/pkgcache/DESCRIPTION | 2 - src/library/pkgcache/NEWS.md | 2 - src/library/pkgcache/R/metadata-cache.R | 2 - src/library/pkgcache/R/repo-set.R | 2 - src/library/pkgdepends/DESCRIPTION | 2 - src/library/pkgdepends/R/gh-mirror.R | 6 +++ src/library/pkgdepends/R/solve.R | 2 - 30 files changed, 147 insertions(+), 102 deletions(-)
Title: Efficient Monitoring of Global Biodiversity Portfolios
Description: Biodiversity areas, especially primary forest, serve a
multitude of functions for local economy, regional functionality of
the ecosystems as well as the global health of our planet. Recently,
adverse changes in human land use practices and climatic responses to
increased greenhouse gas emissions, put these biodiversity areas under
a variety of different threats. The present package helps to analyse a
number of biodiversity indicators based on freely available
geographical datasets. It supports computational efficient routines
that allow the analysis of potentially global biodiversity portfolios.
The primary use case of the package is to support evidence based
reporting of an organization's effort to protect biodiversity areas
under threat and to identify regions were intervention is most duly
needed.
Author: Darius A. Goergen [aut] ,
Om Prakash Bhandari [aut],
Andreas Petutschnig [ctb] ,
Sven Bergtold [ctb],
Zivan Karaman [ctb, cre] ,
MAPME-Initiative [cph, fnd]
Maintainer: Zivan Karaman <zivan.karaman@gmail.com>
Diff between mapme.biodiversity versions 0.9.5 dated 2025-10-06 and 0.9.6 dated 2026-04-27
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More information about mapme.biodiversity at CRAN
Permanent link
Title: Bayesian Modeling and Causal Inference for Multivariate
Longitudinal Data
Description: Easy-to-use and efficient interface for
Bayesian inference of complex panel (time series) data using dynamic
multivariate panel models by Helske and Tikka (2024)
<doi:10.1016/j.alcr.2024.100617>. The package supports joint modeling of
multiple measurements per individual, time-varying and time-invariant
effects, and a wide range of discrete and continuous distributions.
Estimation of these dynamic multivariate panel models is carried out via
'Stan'. For an in-depth tutorial of the package, see
(Tikka and Helske, 2025) <doi:10.18637/jss.v115.i05>.
Author: Santtu Tikka [aut, cre] ,
Jouni Helske [aut] ,
Nicholas Clark [rev],
Lucy D'Agostino McGowan [rev]
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between dynamite versions 1.6.2 dated 2026-01-13 and 1.6.3 dated 2026-04-27
DESCRIPTION | 6 MD5 | 26 NEWS.md | 4 R/deterministic.R | 464 +-- R/dynamite.R | 2588 +++++++++++----------- R/prepare_stan_input.R | 2608 +++++++++++----------- R/specials.R | 670 ++--- R/stanblocks.R | 1920 ++++++++-------- R/stanblocks_families.R | 4894 +++++++++++++++++++++--------------------- R/sysdata.rda |binary R/update.R | 296 +- inst/CITATION | 84 inst/doc/dynamite.html | 16 inst/doc/dynamite_priors.html | 28 14 files changed, 6805 insertions(+), 6799 deletions(-)
Title: Survey Standard Error Estimation for Cumulated Estimates and
their Differences in Complex Panel Designs
Description: Calculate point estimates and their standard errors in complex household surveys using bootstrap replicates. Bootstrapping considers survey design with a rotating panel. A comprehensive description of the methodology can be found under <https://statistikat.github.io/surveysd/articles/methodology.html>.
Author: Johannes Gussenbauer [aut, cre],
Alexander Kowarik [aut] ,
Eileen Vattheuer [aut],
Gregor de Cillia [aut],
Matthias Till [ctb]
Maintainer: Johannes Gussenbauer <Johannes.Gussenbauer@statistik.gv.at>
Diff between surveysd versions 2.0.1 dated 2026-03-17 and 2.0.2 dated 2026-04-27
DESCRIPTION | 6 MD5 | 15 - R/draw.bootstrap.R | 73 +++-- inst/doc/error_estimation.html | 542 ++++++++++++++++++++--------------------- inst/doc/ipf.html | 23 - inst/doc/raowu.html | 4 man/draw.bootstrap.Rd | 41 +-- tests/testthat/Rplots.pdf |only vignettes/surveysd.html | 70 ++--- 9 files changed, 406 insertions(+), 368 deletions(-)
Title: 'Fitbit' Visualizations
Description: Visualization of pre-downloaded 'Fitbit' personal health data using 'ggplot2' Visualizations, 'Leaflet' and 3-dimensional 'Rayshader' Maps. The 3-dimensional 'Rayshader' Map requires the installation of the 'CopernicusDEM' R package which includes the 30- and 90-meter elevation data.
Author: Lampros Mouselimis [aut, cre]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between fitbitViz versions 1.0.7 dated 2025-06-21 and 1.0.8 dated 2026-04-27
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Title: Create and Evaluate Probability Distributions
Description: Create and evaluate probability distribution objects from a
variety of families or define custom distributions. Automatically compute
distributional properties, even when they have not been specified.
This package supports statistical modeling and simulations, and forms
the core of the probaverse suite of R packages.
Author: Vincenzo Coia [aut, cre, cph],
Amogh Joshi [ctb],
Shuyi Tan [ctb],
Zhipeng Zhu [ctb],
olivroy [ctb]
Maintainer: Vincenzo Coia <vincenzo.coia@gmail.com>
Diff between distionary versions 0.1.0 dated 2025-12-01 and 0.1.1 dated 2026-04-27
distionary-0.1.0/distionary/R/range.R |only distionary-0.1.0/distionary/R/srr-stats-standards.R |only distionary-0.1.1/distionary/DESCRIPTION | 15 distionary-0.1.1/distionary/MD5 | 200 +++++----- distionary-0.1.1/distionary/NEWS.md | 8 distionary-0.1.1/distionary/R/distionary-package.R | 7 distionary-0.1.1/distionary/R/distribution.R | 22 - distionary-0.1.1/distionary/R/dst_bern.R | 32 - distionary-0.1.1/distionary/R/dst_beta.R | 32 - distionary-0.1.1/distionary/R/dst_binom.R | 35 - distionary-0.1.1/distionary/R/dst_cauchy.R | 32 - distionary-0.1.1/distionary/R/dst_chisq.R | 32 - distionary-0.1.1/distionary/R/dst_degenerate.R | 32 - distionary-0.1.1/distionary/R/dst_empirical.R | 32 - distionary-0.1.1/distionary/R/dst_exp.R | 32 - distionary-0.1.1/distionary/R/dst_f.R | 32 - distionary-0.1.1/distionary/R/dst_finite.R | 32 - distionary-0.1.1/distionary/R/dst_gamma.R | 32 - distionary-0.1.1/distionary/R/dst_geom.R | 32 - distionary-0.1.1/distionary/R/dst_gev.R | 32 - distionary-0.1.1/distionary/R/dst_gp.R | 32 - distionary-0.1.1/distionary/R/dst_hyper.R | 32 - distionary-0.1.1/distionary/R/dst_lnorm.R | 32 - distionary-0.1.1/distionary/R/dst_lp3.R | 90 +--- distionary-0.1.1/distionary/R/dst_nbinom.R | 32 - distionary-0.1.1/distionary/R/dst_norm.R | 32 - distionary-0.1.1/distionary/R/dst_null.R | 32 - distionary-0.1.1/distionary/R/dst_pearson3.R | 39 - distionary-0.1.1/distionary/R/dst_pois.R | 32 - distionary-0.1.1/distionary/R/dst_t.R | 32 - distionary-0.1.1/distionary/R/dst_unif.R | 32 - distionary-0.1.1/distionary/R/dst_weibull.R | 32 - distionary-0.1.1/distionary/R/enframe.R | 12 distionary-0.1.1/distionary/R/eval_cdf.R | 24 - distionary-0.1.1/distionary/R/eval_chf.R | 24 - distionary-0.1.1/distionary/R/eval_density.R | 24 - distionary-0.1.1/distionary/R/eval_from_network-quantile.R | 4 distionary-0.1.1/distionary/R/eval_hazard.R | 24 - distionary-0.1.1/distionary/R/eval_odds.R | 24 - distionary-0.1.1/distionary/R/eval_pmf.R | 24 - distionary-0.1.1/distionary/R/eval_property.R | 26 - distionary-0.1.1/distionary/R/eval_quantile.R | 34 - distionary-0.1.1/distionary/R/eval_return.R | 24 - distionary-0.1.1/distionary/R/eval_survival.R | 24 - distionary-0.1.1/distionary/R/intrinsics.R | 4 distionary-0.1.1/distionary/R/kurtosis.R | 2 distionary-0.1.1/distionary/R/mean.R | 4 distionary-0.1.1/distionary/R/median.R | 4 distionary-0.1.1/distionary/R/new_distribution.R | 6 distionary-0.1.1/distionary/R/parameters.R | 2 distionary-0.1.1/distionary/R/pdq_gev.R | 7 distionary-0.1.1/distionary/R/pdq_gp.R | 7 distionary-0.1.1/distionary/R/plot.R | 3 distionary-0.1.1/distionary/R/pretty_name.R | 4 distionary-0.1.1/distionary/R/prob_left_right.R | 24 - distionary-0.1.1/distionary/R/range.r |only distionary-0.1.1/distionary/R/realise.R | 5 distionary-0.1.1/distionary/R/representation_as_function.R | 2 distionary-0.1.1/distionary/R/skewness.R | 2 distionary-0.1.1/distionary/R/stdev.R | 2 distionary-0.1.1/distionary/R/utils.R | 2 distionary-0.1.1/distionary/R/variance.R | 2 distionary-0.1.1/distionary/R/vtype.R | 2 distionary-0.1.1/distionary/README.md | 6 distionary-0.1.1/distionary/build/vignette.rds |binary distionary-0.1.1/distionary/inst/doc/pseudocode.Rmd |only distionary-0.1.1/distionary/inst/doc/pseudocode.html |only distionary-0.1.1/distionary/inst/doc/specify-built-in.html | 2 distionary-0.1.1/distionary/inst/doc/specify-user-defined.html | 4 distionary-0.1.1/distionary/man/distionary-package.Rd | 1 distionary-0.1.1/distionary/man/distribution.Rd | 9 distionary-0.1.1/distionary/man/figures/README-unnamed-chunk-5-1.png |binary distionary-0.1.1/distionary/man/figures/README-unnamed-chunk-5-2.png |binary distionary-0.1.1/distionary/man/figures/README-unnamed-chunk-9-1.png |binary distionary-0.1.1/distionary/man/range.Rd | 2 distionary-0.1.1/distionary/tests/testthat/test-distribution.R | 3 distionary-0.1.1/distionary/tests/testthat/test-dst_degenerate.R | 4 distionary-0.1.1/distionary/tests/testthat/test-dst_null.R | 4 distionary-0.1.1/distionary/tests/testthat/test-edge_cases-builtin_dists.R | 11 distionary-0.1.1/distionary/tests/testthat/test-edge_cases-eval_functions.R | 2 distionary-0.1.1/distionary/tests/testthat/test-enframe_eval.R | 13 distionary-0.1.1/distionary/tests/testthat/test-intrinsic.R | 4 distionary-0.1.1/distionary/tests/testthat/test-machine_tolerance.R | 4 distionary-0.1.1/distionary/tests/testthat/test-parameters.R | 2 distionary-0.1.1/distionary/tests/testthat/test-pdq_gev.R | 11 distionary-0.1.1/distionary/tests/testthat/test-pdq_gpd.R | 11 distionary-0.1.1/distionary/tests/testthat/test-pretty_name.R | 2 distionary-0.1.1/distionary/tests/testthat/test-property-kurtosis.R | 4 distionary-0.1.1/distionary/tests/testthat/test-property-kurtosis_exc.R | 4 distionary-0.1.1/distionary/tests/testthat/test-property-mean.R | 4 distionary-0.1.1/distionary/tests/testthat/test-property-skewness.R | 4 distionary-0.1.1/distionary/tests/testthat/test-property-stdev.R | 4 distionary-0.1.1/distionary/tests/testthat/test-property-variance.R | 4 distionary-0.1.1/distionary/tests/testthat/test-realise.R | 8 distionary-0.1.1/distionary/tests/testthat/test-representation-chf.R | 17 distionary-0.1.1/distionary/tests/testthat/test-representation-density.R | 13 distionary-0.1.1/distionary/tests/testthat/test-representation-hazard.R | 17 distionary-0.1.1/distionary/tests/testthat/test-representation-odds.R | 17 distionary-0.1.1/distionary/tests/testthat/test-representation-pmf.R | 17 distionary-0.1.1/distionary/tests/testthat/test-representation-quantile.R | 41 -- distionary-0.1.1/distionary/tests/testthat/test-representation-return.R | 17 distionary-0.1.1/distionary/tests/testthat/test-representation-survival.R | 17 distionary-0.1.1/distionary/tests/testthat/test-representations_satisfied.R | 5 distionary-0.1.1/distionary/vignettes/pseudocode.Rmd |only 104 files changed, 160 insertions(+), 1600 deletions(-)
Title: Bayesian Multi-State Modelling of Chronic Disease Burden Data
Description: Estimation of incidence and case fatality for a chronic disease, given partial information, using a multi-state model. Given data on age-specific mortality and either incidence or prevalence, Bayesian inference is used to estimate the posterior distributions of incidence, case fatality, and functions of these such as prevalence. The methods are described in Jackson et al. (2023) <doi:10.1093/jrsssa/qnac015>.
Author: Christopher Jackson [aut, cre, cph]
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between disbayes versions 1.1.0 dated 2023-09-09 and 1.1.1 dated 2026-04-27
DESCRIPTION | 16 MD5 | 38 NEWS.md | 12 R/disbayes-package.R | 3 R/fit.R | 4 README.md | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/disbayes.R | 24 inst/doc/disbayes.Rmd | 4 inst/doc/disbayes.html | 142 man/conflict_disbayes.Rd | 84 man/disbayes-package.Rd | 12 src/stanExports_disbayes.cc | 34 src/stanExports_disbayes.h | 6306 ++++++++++++---------------- src/stanExports_disbayes_hier.cc | 34 src/stanExports_disbayes_hier.h | 8541 +++++++++++++++++---------------------- tests/slow/test_loo.R | 16 tests/testthat/test_loo.R | 8 vignettes/disbayes.Rmd | 4 20 files changed, 6991 insertions(+), 8292 deletions(-)
Title: Interactive Feature-Based Analysis of AIRR-Seq Data
Description: An interactive framework for the exploration and analysis of
adaptive immune receptor repertoire sequencing (AIRR-seq) data. It
enables large-scale computation and integrated analysis of
sequence-derived features, including physicochemical properties, amino
acid descriptor sets, sequence motifs, compositional patterns, and
somatic hypermutation metrics. The application supports multiscale
analysis across sequences, clones, and repertoires, with interactive
visualizations and statistical feature selection. 'AbSolution' also
facilitates reproducible research by enabling structured export of
data, code, parameters, and computational environments. See
<https://github.com/EDS-Bioinformatics-Laboratory/AbSolution> for more
details.
Author: Rodrigo Garcia-Valiente [cre, aut] ,
Charisios Triantafyllou [aut] ,
Antoine van Kampen [aut, ths]
Maintainer: Rodrigo Garcia-Valiente <r.garciavaliente@amsterdamumc.nl>
Diff between AbSolution versions 1.0.0 dated 2026-04-21 and 1.0.1 dated 2026-04-27
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/app_ui.R | 2 +- README.md | 12 +++++++++++- 5 files changed, 29 insertions(+), 12 deletions(-)
Title: Hard and Soft Cluster Validity Indices
Description: Algorithms for checking the accuracy of a clustering result with known classes, computing cluster validity indices, and generating plots for comparing them.
The package is compatible with K-means, fuzzy C means, EM clustering, and hierarchical clustering (single, average, and complete linkage).
The details of the indices in this package can be found in:
J. C. Bezdek, M. Moshtaghi, T. Runkler, C. Leckie (2016) <doi:10.1109/TFUZZ.2016.2540063>,
T. Calinski, J. Harabasz (1974) <doi:10.1080/03610927408827101>,
C. H. Chou, M. C. Su, E. Lai (2004) <doi:10.1007/s10044-004-0218-1>,
D. L. Davies, D. W. Bouldin (1979) <doi:10.1109/TPAMI.1979.4766909>,
J. C. Dunn (1973) <doi:10.1080/01969727308546046>,
F. Haouas, Z. Ben Dhiaf, A. Hammouda, B. Solaiman (2017) <doi:10.1109/FUZZ-IEEE.2017.8015651>,
M. Kim, R. S. Ramakrishna (2005) <doi:10.1016/j.patrec.2005.04.007>,
S. H. Kwon (1998) <doi:10.1049/EL:19981523>,
S. H. Kwon, J. Kim, S. H. Son (2021) <d [...truncated...]
Author: Nathakhun Wiroonsri [cre, aut] ,
Onthada Preedasawakul [aut]
Maintainer: Nathakhun Wiroonsri <nathakhun.wir@kmutt.ac.th>
Diff between UniversalCVI versions 1.3.0 dated 2025-09-10 and 1.4.0 dated 2026-04-27
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 3 +++ R/Hvalid.R | 30 ++++++++++++++++++++++++++++-- R/plot_idx.R | 6 +++--- build/partial.rdb |binary man/Hvalid.Rd | 14 +++++++++++--- man/SH.IDX.Rd | 3 +-- man/plot_idx.Rd | 4 ++-- 9 files changed, 61 insertions(+), 25 deletions(-)
Title: Clinical Trial Simulator
Description: Simulate phase II and/or phase III clinical trials. It supports various types of endpoints and adaptive strategies. Tools for carrying out graphical testing procedure and combination test under group sequential design are also provided.
Author: Han Zhang [cre, aut]
Maintainer: Han Zhang <zhangh.ustc@gmail.com>
Diff between TrialSimulator versions 1.16.0 dated 2026-04-13 and 1.17.1 dated 2026-04-27
TrialSimulator-1.16.0/TrialSimulator/inst/doc/simulatePfsAndOs.R |only TrialSimulator-1.16.0/TrialSimulator/inst/doc/simulatePfsAndOs.Rmd |only TrialSimulator-1.16.0/TrialSimulator/inst/doc/simulatePfsAndOs.html |only TrialSimulator-1.16.0/TrialSimulator/vignettes/simulatePfsAndOs.Rmd |only TrialSimulator-1.17.1/TrialSimulator/DESCRIPTION | 11 - TrialSimulator-1.17.1/TrialSimulator/MD5 | 84 +++++--- TrialSimulator-1.17.1/TrialSimulator/NAMESPACE | 1 TrialSimulator-1.17.1/TrialSimulator/NEWS.md | 19 + TrialSimulator-1.17.1/TrialSimulator/R/CorrelatedPfsAndOs2.R |only TrialSimulator-1.17.1/TrialSimulator/R/CorrelatedPfsAndOs3.R | 2 TrialSimulator-1.17.1/TrialSimulator/R/Endpoint.R | 3 TrialSimulator-1.17.1/TrialSimulator/R/Trials.R | 4 TrialSimulator-1.17.1/TrialSimulator/R/getDoseRangingOutput.R |only TrialSimulator-1.17.1/TrialSimulator/R/solveThreeStateModel.R | 14 - TrialSimulator-1.17.1/TrialSimulator/R/sysdata.rda |binary TrialSimulator-1.17.1/TrialSimulator/README.md | 11 - TrialSimulator-1.17.1/TrialSimulator/build/vignette.rds |binary TrialSimulator-1.17.1/TrialSimulator/inst/doc/adaptiveDesign.Rmd | 12 - TrialSimulator-1.17.1/TrialSimulator/inst/doc/adaptiveDesign.html | 11 - TrialSimulator-1.17.1/TrialSimulator/inst/doc/defineArms.Rmd | 10 TrialSimulator-1.17.1/TrialSimulator/inst/doc/defineArms.html | 7 TrialSimulator-1.17.1/TrialSimulator/inst/doc/doseRanging.R | 20 + TrialSimulator-1.17.1/TrialSimulator/inst/doc/doseRanging.Rmd | 14 - TrialSimulator-1.17.1/TrialSimulator/inst/doc/doseRanging.html | 101 ++++------ TrialSimulator-1.17.1/TrialSimulator/inst/doc/fixedDesign.Rmd | 14 - TrialSimulator-1.17.1/TrialSimulator/inst/doc/fixedDesign.html | 18 + TrialSimulator-1.17.1/TrialSimulator/inst/doc/simulatePfsAndOsGumbel.R |only TrialSimulator-1.17.1/TrialSimulator/inst/doc/simulatePfsAndOsGumbel.Rmd |only TrialSimulator-1.17.1/TrialSimulator/inst/doc/simulatePfsAndOsGumbel.html |only TrialSimulator-1.17.1/TrialSimulator/inst/doc/simulatePfsAndOsIdm.R |only TrialSimulator-1.17.1/TrialSimulator/inst/doc/simulatePfsAndOsIdm.Rmd |only TrialSimulator-1.17.1/TrialSimulator/inst/doc/simulatePfsAndOsIdm.html |only TrialSimulator-1.17.1/TrialSimulator/man/CorrelatedPfsAndOs2.Rd |only TrialSimulator-1.17.1/TrialSimulator/man/CorrelatedPfsAndOs3.Rd | 2 TrialSimulator-1.17.1/TrialSimulator/man/endpoint.Rd | 2 TrialSimulator-1.17.1/TrialSimulator/man/figures/logo.svg |only TrialSimulator-1.17.1/TrialSimulator/man/getDoseRangingOutput.Rd |only TrialSimulator-1.17.1/TrialSimulator/man/plot.three_state_model.Rd | 4 TrialSimulator-1.17.1/TrialSimulator/man/solveThreeStateModel.Rd | 12 - TrialSimulator-1.17.1/TrialSimulator/tests/testthat/test-adaptive-mutations.R |only TrialSimulator-1.17.1/TrialSimulator/tests/testthat/test-adaptive.R | 5 TrialSimulator-1.17.1/TrialSimulator/tests/testthat/test-fit-fm.R |only TrialSimulator-1.17.1/TrialSimulator/tests/testthat/test-generators.R |only TrialSimulator-1.17.1/TrialSimulator/tests/testthat/test-graphical.R |only TrialSimulator-1.17.1/TrialSimulator/tests/testthat/test-gst.R |only TrialSimulator-1.17.1/TrialSimulator/tests/testthat/test-internals.R |only TrialSimulator-1.17.1/TrialSimulator/tests/testthat/test-partial-coverage.R |only TrialSimulator-1.17.1/TrialSimulator/tests/testthat/test-summaries.R |only TrialSimulator-1.17.1/TrialSimulator/tests/testthat/test-trials-methods.R |only TrialSimulator-1.17.1/TrialSimulator/tests/testthat/test-utils.R | 1 TrialSimulator-1.17.1/TrialSimulator/vignettes/adaptiveDesign.Rmd | 12 - TrialSimulator-1.17.1/TrialSimulator/vignettes/defineArms.Rmd | 10 TrialSimulator-1.17.1/TrialSimulator/vignettes/doseRanging.Rmd | 14 - TrialSimulator-1.17.1/TrialSimulator/vignettes/fixedDesign.Rmd | 14 - TrialSimulator-1.17.1/TrialSimulator/vignettes/simulatePfsAndOsGumbel.Rmd |only TrialSimulator-1.17.1/TrialSimulator/vignettes/simulatePfsAndOsIdm.Rmd |only 56 files changed, 266 insertions(+), 166 deletions(-)
More information about TrialSimulator at CRAN
Permanent link
Title: Builds the 'TinyCC' Command-Line Interface and Library for 'C'
Scripting in 'R'
Description: Builds the 'TinyCC' (Tiny 'C' Compiler) command-line interface
and library for package use in 'R'. The package compiles 'TinyCC' from source and
provides R functions to interact with the compiler. 'TinyCC' can be
used for header preprocessing, just-in-time compilation of 'C' code in
'R', and lightweight 'C' scripting workflows.
Author: Sounkou Mahamane Toure [aut, cre],
Mike Cheng [cph] ,
Fabrice Bellard and tinycc Authors [ctb]
authors and COPYRIGHT holders)
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>
Diff between Rtinycc versions 0.1.8 dated 2026-04-24 and 0.1.9 dated 2026-04-27
DESCRIPTION | 6 MD5 | 38 - NEWS.md | 25 + R/ffi.R | 68 ++- README.md | 46 +- configure | 59 ++ inst/doc/compilation-and-call-overhead.R | 19 inst/doc/compilation-and-call-overhead.Rmd | 26 - inst/doc/compilation-and-call-overhead.html | 553 ++++++++++++++-------------- inst/doc/ffi-helpers.html | 8 inst/doc/getting-started.html | 10 inst/doc/linking-external-libraries.R | 20 - inst/doc/linking-external-libraries.Rmd | 28 + inst/doc/linking-external-libraries.html | 9 inst/tinytest/test_fork_serialize.R | 71 +++ man/figures/README-io_uring-demo-1.png |binary man/tcc_library.Rd | 8 man/tcc_link.Rd | 5 vignettes/compilation-and-call-overhead.Rmd | 26 - vignettes/linking-external-libraries.Rmd | 28 + 20 files changed, 637 insertions(+), 416 deletions(-)
Title: Sparse Generalized Linear Model with L0 Approximation for
Feature Selection
Description: Fits sparse generalized linear models using an adaptive ridge
approximation to an L0 penalty. Supported model families include
Gaussian, logistic, Poisson, gamma, and inverse Gaussian regression.
The package also provides cross-validation for selecting the penalty
parameter.
Author: Wenchuan Guo [aut, cre],
Shujie Ma [aut],
Zhenqiu Liu [aut]
Maintainer: Wenchuan Guo <wguo1017@gmail.com>
Diff between l0ara versions 0.1.6 dated 2020-02-06 and 0.1.7 dated 2026-04-27
DESCRIPTION | 29 ++++-- MD5 | 37 ++++---- NEWS | 24 +++-- R/RcppExports.R | 14 +-- R/cv.l0ara.R | 185 +++++++++++++++++++++++++------------------ R/l0ara.R | 118 ++++++++++++++------------- R/summary.R | 215 ++++++++++++++++++++++++++++---------------------- R/utils.R |only README.md | 41 +++++++-- man/coef.cv.l0ara.Rd | 15 ++- man/coef.l0ara.Rd | 13 +-- man/cv.l0ara.Rd | 53 +++++++----- man/l0ara.Rd | 66 ++++++++++----- man/plot.cv.l0ara.Rd | 15 ++- man/plot.l0ara.Rd | 22 +++-- man/predict.l0ara.Rd | 31 +++++-- man/print.cv.l0ara.Rd | 15 +-- man/print.l0ara.Rd | 15 +-- src/RcppExports.cpp | 5 + src/l0araC.cpp | 124 ++++++++++++++-------------- 20 files changed, 611 insertions(+), 426 deletions(-)
Title: Computing the Extent of Agreement among Raters with
Chance-Corrected Agreement Coefficient (CAC)
Description: Contains a series of R functions for calculating various chance-corrected agreement
coefficients (CAC) among 2 or more raters. Among the CAC coefficients covered are Cohen's kappa, Conger's kappa,
Fleiss' kappa, Brennan-Prediger coefficient, Gwet's AC1/AC2 coefficients, and Krippendorff's alpha. Multiple
sets of weights are proposed for computing weighted analyses. Also included in this package is Bangdiwala's B
coefficient.
Author: Kilem L. Gwet [aut, cre]
Maintainer: Kilem L. Gwet <gwet@agreestat.com>
This is a re-admission after prior archival of version 1.0 dated 2019-09-23
Diff between irrCAC versions 1.0 dated 2019-09-23 and 1.4 dated 2026-04-27
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Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2023, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Tim Gyger [aut],
Pascal Kuendig [aut],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the incl [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 1.6.6 dated 2026-02-11 and 1.6.7 dated 2026-04-27
DESCRIPTION | 8 MD5 | 64 R/GPModel.R | 104 R/gpb.Booster.R | 72 configure.ac | 2 demo/GPBoost_algorithm.R | 35 demo/generalized_linear_Gaussian_process_mixed_effects_models.R | 6 man/GPModel.Rd | 4 man/GPModel_shared_params.Rd | 12 man/fitGPModel.Rd | 4 man/predict.GPModel.Rd | 13 man/predict.gpb.Booster.Rd | 25 src/CG_utils.cpp | 1 src/Vecchia_utils.cpp | 209 + src/c_api.cpp | 25 src/gpboost_R.cpp | 20 src/gpboost_R.h | 23 src/include/GPBoost/Vecchia_utils.h | 36 src/include/GPBoost/cov_fcts.h | 8 src/include/GPBoost/likelihoods.h | 1244 +++++++--- src/include/GPBoost/re_comp.h | 30 src/include/GPBoost/re_model.h | 19 src/include/GPBoost/re_model_template.h | 1040 +++++--- src/include/GPBoost/sparse_matrix_utils.h | 119 src/include/LightGBM/c_api.h | 21 src/metric/binary_metric.hpp | 4 src/metric/regression_metric.hpp | 14 src/re_model.cpp | 70 tests/testthat/test_GPModel_combined_GP_random_effects.R | 529 +++- tests/testthat/test_GPModel_gaussian_process.R | 122 tests/testthat/test_GPModel_non_Gaussian_data.R | 2 tests/testthat/test_z_GPBoost_algorithm.R | 38 tests/testthat/test_z_GPBoost_algorithm_non_Gaussian_data.R | 38 33 files changed, 2991 insertions(+), 970 deletions(-)
Title: Modified Generalized Estimating Equations for Small-Sample Data
Description: Analyze small-sample clustered or longitudinal data using modified
generalized estimating equations with bias-adjusted covariance estimator.
The package provides any combination of three modified generalized
estimating equations and 11 bias-adjusted covariance estimators.
Author: Ryota Ishii [aut, cre],
Kazushi Maruo [ctb],
Masahiko Gosho [ctb]
Maintainer: Ryota Ishii <r.ishii0808@gmail.com>
Diff between geess versions 1.0.0 dated 2025-12-03 and 1.0.1 dated 2026-04-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/sqrtmat.R | 3 ++- 4 files changed, 12 insertions(+), 7 deletions(-)
Title: Tidy Verbs for Fast Data Manipulation
Description: A toolkit of tidy data manipulation verbs with 'data.table' as the backend.
Combining the merits of syntax elegance from 'dplyr' and computing performance from 'data.table',
'tidyfst' intends to provide users with state-of-the-art data manipulation tools with least pain.
This package is an extension of 'data.table'. While enjoying a tidy syntax,
it also wraps combinations of efficient functions to facilitate frequently-used data operations.
Author: Tian-Yuan Huang [aut, cre]
Maintainer: Tian-Yuan Huang <huang.tian-yuan@qq.com>
Diff between tidyfst versions 1.8.3 dated 2025-12-16 and 1.8.4 dated 2026-04-27
DESCRIPTION | 15 +- MD5 | 22 +-- NAMESPACE | 3 R/global_setting.R | 4 R/pkg_load.R | 2 build/vignette.rds |binary inst/doc/benchmark.html | 256 ++++++++++++++++++++--------------------- inst/doc/chinese_tutorial.html | 73 ++++++----- inst/doc/example2_join.html | 10 - inst/doc/example3_reshape.html | 6 inst/doc/example4_nest.html | 3 man/reexports.Rd | 3 12 files changed, 196 insertions(+), 201 deletions(-)
Title: Network Analysis for Omics Data
Description: Comprehensive network analysis package.
Calculate correlation network fastly, accelerate lots of analysis by parallel computing.
Support for multi-omics data, search sub-nets fluently.
Handle bigger data, more than 10,000 nodes in each omics.
Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize.
Provide comprehensive topology indexes calculation, including ecological network stability.
Author: Chen Peng [aut, cre]
Maintainer: Chen Peng <bfzede@gmail.com>
Diff between MetaNet versions 0.2.8 dated 2026-02-09 and 0.3.1 dated 2026-04-27
DESCRIPTION | 8 MD5 | 30 - NEWS.md | 12 R/2-2.manipulate.R | 2 R/3-1.layout.R | 1 R/3-2.shapes.R | 10 R/3-3.plot.R | 6 R/3-4.other_plot.R | 2 R/5.topological.R | 2 R/6.modules.R | 4 README.md | 646 ++++++++++++++++++++++++++++++- inst/doc/MetaNet.html | 4 man/MetaNet-package.Rd | 2 man/clean_multi_edge_metanet.Rd | 2 man/figures/README-unnamed-chunk-3-1.png |only man/figures/README-unnamed-chunk-4-1.png |only man/module_net.Rd | 2 17 files changed, 677 insertions(+), 56 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-15 0.1.0
Title: Distribution Functions and Parameter Estimates for the Triangle
Distribution
Description: Provides the "r, q, p, and d" distribution functions for the triangle distribution. Also includes maximum likelihood estimation of parameters.
Author: Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between triangle versions 1.0 dated 2022-12-12 and 1.1.0 dated 2026-04-27
triangle-1.0/triangle/NEWS |only triangle-1.1.0/triangle/ChangeLog | 40 triangle-1.1.0/triangle/DESCRIPTION | 25 triangle-1.1.0/triangle/MD5 | 80 triangle-1.1.0/triangle/NAMESPACE | 99 triangle-1.1.0/triangle/NEWS.md |only triangle-1.1.0/triangle/R/cdfe.R | 84 triangle-1.1.0/triangle/R/dtriangle.R | 10 triangle-1.1.0/triangle/R/fit-plots.R | 142 - triangle-1.1.0/triangle/R/mle-utils.R | 476 +-- triangle-1.1.0/triangle/R/mle.R | 1307 ++++++---- triangle-1.1.0/triangle/R/mom.R | 57 triangle-1.1.0/triangle/R/ptriangle.r | 21 triangle-1.1.0/triangle/R/qtriangle.R | 3 triangle-1.1.0/triangle/R/rtriangle.r | 34 triangle-1.1.0/triangle/build/partial.rdb |binary triangle-1.1.0/triangle/build/vignette.rds |binary triangle-1.1.0/triangle/inst/CITATION |only triangle-1.1.0/triangle/inst/doc/triangledistributionmath.Rmd | 464 ++- triangle-1.1.0/triangle/inst/doc/triangledistributionmath.html | 603 +++- triangle-1.1.0/triangle/man/figures |only triangle-1.1.0/triangle/man/ltriangle.Rd | 142 - triangle-1.1.0/triangle/man/mle-utils.Rd | 22 triangle-1.1.0/triangle/man/standard_triangle_mle.Rd | 5 triangle-1.1.0/triangle/man/triangle.Rd | 152 - triangle-1.1.0/triangle/man/triangle_mle.Rd | 15 triangle-1.1.0/triangle/man/triangle_mom.Rd | 10 triangle-1.1.0/triangle/tests/testthat.R | 14 triangle-1.1.0/triangle/tests/testthat/Rplots.pdf |binary triangle-1.1.0/triangle/tests/testthat/_problems |only triangle-1.1.0/triangle/tests/testthat/helper-mle-utils.R |only triangle-1.1.0/triangle/tests/testthat/test-cdfe.R | 20 triangle-1.1.0/triangle/tests/testthat/test-dtriangle.R | 62 triangle-1.1.0/triangle/tests/testthat/test-fit-plots.R | 2 triangle-1.1.0/triangle/tests/testthat/test-ltriangle.r | 2 triangle-1.1.0/triangle/tests/testthat/test-mle-utils.R | 42 triangle-1.1.0/triangle/tests/testthat/test-mle.R | 243 + triangle-1.1.0/triangle/tests/testthat/test-mom.R | 63 triangle-1.1.0/triangle/tests/testthat/test-ptriangle.r | 55 triangle-1.1.0/triangle/tests/testthat/test-qtriangle.R | 49 triangle-1.1.0/triangle/tests/testthat/test-rtriangle.r | 53 triangle-1.1.0/triangle/vignettes/triangledistributionmath.Rmd | 464 ++- 42 files changed, 3167 insertions(+), 1693 deletions(-)
Title: Latin Hypercube Samples
Description: Provides a number of methods for creating and augmenting Latin Hypercube Samples and Orthogonal Array Latin Hypercube Samples.
Author: Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between lhs versions 1.2.1 dated 2026-03-01 and 1.3.0 dated 2026-04-27
DESCRIPTION | 14 +++-- MD5 | 39 +++++++-------- NEWS | 4 + build/vignette.rds |binary inst/CITATION |only inst/doc/augment_lhs.html | 12 ++-- inst/doc/correlated_lhs.html | 4 - inst/doc/lhs_basics.html | 14 ++--- inst/doc/lhs_faq.html | 24 ++++----- man/lhs-package.Rd | 2 src/OACommonDefines.h | 111 +++++++++++++++++++++---------------------- src/bclibVersion.h | 2 src/geneticLHS.cpp | 33 ++++++------ src/improvedLHS.cpp | 3 + src/lhslibVersion.h | 2 src/matrix.h | 12 ---- src/maximinLHS.cpp | 3 + src/optSeededLHS.cpp | 3 + src/optimumLHS.cpp | 3 + src/runif.cpp | 40 ++++++++------- src/runif.h | 40 +++++++-------- 21 files changed, 190 insertions(+), 175 deletions(-)
Title: Genetic Algorithms in Regression
Description: Provides a genetic algorithm framework for regression problems requiring discrete optimization over model spaces with unknown or varying dimension, where gradient-based methods and exhaustive enumeration are impractical. Uses a compact chromosome representation for tasks including spline knot placement and best-subset variable selection, with constraint-preserving crossover and mutation, exact uniform initialization under spacing constraints, steady-state replacement, and optional island-model parallelization from Lu, Lund, and Lee (2010, <doi:10.1214/09-AOAS289>). The computation is built on the 'GA' engine of Scrucca (2017, <doi:10.32614/RJ-2017-008>) and 'changepointGA' engine from Li and Lu (2024, <doi:10.48550/arXiv.2410.15571>). In challenging high-dimensional settings, 'GAReg' enables efficient search and delivers near-optimal solutions when alternative algorithms are not well-justified.
Author: Mo Li [aut, cre],
QiQi Lu [aut],
Robert Lund [aut],
Xueheng Shi [aut]
Maintainer: Mo Li <mo.li@louisiana.edu>
Diff between GAReg versions 0.1.1 dated 2026-03-29 and 0.1.2 dated 2026-04-27
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/doc/vignette.html | 12 ++++++------ 3 files changed, 11 insertions(+), 11 deletions(-)
Title: Create a Flexible Forest Plot
Description: Create a forest plot based on the layout of the data. Confidence intervals in multiple columns by groups can be done easily. Editing the plot, inserting/adding text, applying a theme to the plot, and much more.
Author: Alimu Dayimu [aut, cre]
Maintainer: Alimu Dayimu <ad938@cam.ac.uk>
Diff between forestploter versions 1.1.3 dated 2025-04-13 and 1.1.4 dated 2026-04-27
forestploter-1.1.3/forestploter/R/add_text.r |only forestploter-1.1.3/forestploter/R/check_errors.r |only forestploter-1.1.3/forestploter/R/scale.r |only forestploter-1.1.4/forestploter/DESCRIPTION | 11 forestploter-1.1.4/forestploter/MD5 | 144 +- forestploter-1.1.4/forestploter/NEWS.md | 8 forestploter-1.1.4/forestploter/R/add_border.R | 16 forestploter-1.1.4/forestploter/R/add_grob.r | 15 forestploter-1.1.4/forestploter/R/add_text.R |only forestploter-1.1.4/forestploter/R/check_errors.R |only forestploter-1.1.4/forestploter/R/edit_plot.R | 14 forestploter-1.1.4/forestploter/R/forest.R | 185 +-- forestploter-1.1.4/forestploter/R/helper.R | 17 forestploter-1.1.4/forestploter/R/insert_text.R | 313 ++--- forestploter-1.1.4/forestploter/R/legend_grob.R | 11 forestploter-1.1.4/forestploter/R/make-arrow.R | 15 forestploter-1.1.4/forestploter/R/make-boxplot.R | 14 forestploter-1.1.4/forestploter/R/make-xaixs.R | 7 forestploter-1.1.4/forestploter/R/makeci.R | 28 forestploter-1.1.4/forestploter/R/scale.R |only forestploter-1.1.4/forestploter/R/theme.R | 232 ++-- forestploter-1.1.4/forestploter/R/utils.R | 79 + forestploter-1.1.4/forestploter/README.md | 73 - forestploter-1.1.4/forestploter/build/vignette.rds |binary forestploter-1.1.4/forestploter/inst/doc/forestploter-intro.R | 2 forestploter-1.1.4/forestploter/inst/doc/forestploter-intro.Rmd | 58 - forestploter-1.1.4/forestploter/inst/doc/forestploter-intro.html | 330 +++--- forestploter-1.1.4/forestploter/inst/doc/forestploter-post.R | 11 forestploter-1.1.4/forestploter/inst/doc/forestploter-post.Rmd | 541 ++++------ forestploter-1.1.4/forestploter/inst/doc/forestploter-post.html | 142 +- forestploter-1.1.4/forestploter/man/add_border.Rd | 12 forestploter-1.1.4/forestploter/man/add_grob.Rd | 2 forestploter-1.1.4/forestploter/man/add_text.Rd | 12 forestploter-1.1.4/forestploter/man/check_errors.Rd | 15 forestploter-1.1.4/forestploter/man/edit_plot.Rd | 10 forestploter-1.1.4/forestploter/man/figures/README-edit-1.png |binary forestploter-1.1.4/forestploter/man/figures/README-example-1.png |binary forestploter-1.1.4/forestploter/man/figures/README-multiple-1.png |binary forestploter-1.1.4/forestploter/man/forest.Rd | 18 forestploter-1.1.4/forestploter/man/forest_theme.Rd | 310 ++--- forestploter-1.1.4/forestploter/man/get_wh.Rd | 10 forestploter-1.1.4/forestploter/man/insert_text.Rd | 11 forestploter-1.1.4/forestploter/man/log_pretty.Rd |only forestploter-1.1.4/forestploter/man/make_summary.Rd | 7 forestploter-1.1.4/forestploter/man/make_ticks.Rd | 13 forestploter-1.1.4/forestploter/man/make_xlim.Rd | 13 forestploter-1.1.4/forestploter/man/makeci.Rd | 11 forestploter-1.1.4/forestploter/man/xscale.Rd | 21 forestploter-1.1.4/forestploter/tests/testthat/Rplots.pdf |binary forestploter-1.1.4/forestploter/tests/testthat/_snaps/addgrob/add-grob-body.svg | 252 ++-- forestploter-1.1.4/forestploter/tests/testthat/_snaps/addgrob/add-grob-header.new.svg |only forestploter-1.1.4/forestploter/tests/testthat/_snaps/addgrob/add-grob-header.svg | 258 ++-- forestploter-1.1.4/forestploter/tests/testthat/_snaps/forest/arrow-end.svg | 100 - 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forestploter-1.1.4/forestploter/tests/testthat/_snaps/forest/x-scale-log2.svg | 100 - forestploter-1.1.4/forestploter/tests/testthat/_snaps/make-boxplot/boxplot-groups.svg | 12 forestploter-1.1.4/forestploter/tests/testthat/_snaps/make-boxplot/boxplot-single.svg | 24 forestploter-1.1.4/forestploter/tests/testthat/_snaps/make-boxplot/xlim-boxplot-single.svg | 66 - forestploter-1.1.4/forestploter/tests/testthat/test-addgrob.R | 10 forestploter-1.1.4/forestploter/tests/testthat/test-check_errors.r | 9 forestploter-1.1.4/forestploter/tests/testthat/test-forest.R | 41 forestploter-1.1.4/forestploter/tests/testthat/test-scale.r | 4 forestploter-1.1.4/forestploter/tests/testthat/test-theme.R | 2 forestploter-1.1.4/forestploter/tests/testthat/test-utils.R | 62 + forestploter-1.1.4/forestploter/vignettes/forestploter-intro.Rmd | 58 - forestploter-1.1.4/forestploter/vignettes/forestploter-post.Rmd | 541 ++++------ 77 files changed, 3221 insertions(+), 3007 deletions(-)
Title: Simulate Forest Resources with the European Forestry Dynamics
Model
Description: An implementation of European Forestry Dynamics Model (EFDM) and
an estimation algorithm for the transition probabilities.
The EFDM is a large-scale forest model that simulates the development of
the forest and estimates volume of wood harvested for any given forested
area. This estimate can be broken down by, for example, species, site
quality, management regime and ownership category.
See Packalen et al. (2015) <doi:10.2788/153990>.
Author: Mikko Kuronen [aut, cre] ,
Minna Raety [aut]
Maintainer: Mikko Kuronen <mikko.kuronen@luke.fi>
Diff between efdm versions 0.2.2 dated 2026-02-05 and 0.2.3 dated 2026-04-27
efdm-0.2.2/efdm/README.md |only efdm-0.2.3/efdm/DESCRIPTION | 6 efdm-0.2.3/efdm/MD5 | 28 +- efdm-0.2.3/efdm/R/core.r | 11 - efdm-0.2.3/efdm/R/estim.r | 3 efdm-0.2.3/efdm/build/vignette.rds |binary efdm-0.2.3/efdm/man/MetsaKasvVyoh.Rd | 44 ++-- efdm-0.2.3/efdm/man/define_activity.Rd | 114 ++++++------ efdm-0.2.3/efdm/man/estimatetransprobs.Rd | 234 ++++++++++++------------- efdm-0.2.3/efdm/man/example.Rd | 50 ++--- efdm-0.2.3/efdm/man/prior_ff.Rd | 76 ++++---- efdm-0.2.3/efdm/man/runEFDM.Rd | 4 efdm-0.2.3/efdm/man/transprobs.Rd | 74 +++---- efdm-0.2.3/efdm/tests/test_donothing.R | 8 efdm-0.2.3/efdm/tests/test_donothing.Rout.save |only efdm-0.2.3/efdm/tests/test_factor.R |only efdm-0.2.3/efdm/tests/test_something.R |only 17 files changed, 333 insertions(+), 319 deletions(-)
Title: Course-Dependent Skill Structures
Description: Deriving skill structures from skill assignment
data for courses (sets of learning objects).
Author: Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between CDSS versions 0.3-0 dated 2025-04-11 and 0.3-1 dated 2026-04-27
Changelog | 31 ++++---- DESCRIPTION | 12 +-- MD5 | 20 +++-- R/cdss_close_ar.R | 82 +++++++++++----------- R/cdss_csma2sf.R | 2 R/cdss_lo_csma2sf.R | 128 +++++++++++++++++------------------ build |only inst/doc |only inst/extdata/SkillAssignment_SR.ods |binary inst/extdata/SkillAssignment_SR.xlsx |only vignettes |only 11 files changed, 145 insertions(+), 130 deletions(-)
Title: Obtain Alpha-Outlier Regions for Well-Known Probability
Distributions
Description: Given the parameters of a distribution, the package uses the concept of alpha-outliers by Davies and Gather (1993) to flag outliers in a data set. See Davies, L.; Gather, U. (1993): The identification of multiple outliers, JASA, 88 423, 782-792, <doi:10.1080/01621459.1993.10476339> for details.
Author: Andre Rehage [aut, cre],
Sonja Kuhnt [aut]
Maintainer: Andre Rehage <andre.rehage@gmx.de>
Diff between alphaOutlier versions 1.2.0 dated 2016-09-09 and 1.2.2 dated 2026-04-27
DESCRIPTION | 20 +++++++++--- MD5 | 6 +-- NEWS | 6 +++ man/alphaOutlier-package.Rd | 68 ++++++++++++++++++++++---------------------- 4 files changed, 57 insertions(+), 43 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-02 1.1.0
2016-01-29 1.0.0
2015-09-25 0.6.3
2015-09-24 0.6.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-22 0.1.1
2016-10-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-04 0.2.0