Title: Useful Wrappers Around Commonly Used Functions
Description: The main functionalities of 'wrappedtools' are:
adding backticks to variable names; rounding to desired precision
with special case for p-values;
selecting columns based on pattern and storing their position, name,
and backticked name; computing and formatting of descriptive statistics
(e.g. mean±SD), comparing groups and creating publication-ready tables with
descriptive statistics and p-values; creating specialized plots for
correlation matrices. Functions were mainly written for my own daily work or
teaching, but may be of use to others as well.
Author: Andreas Busjahn [cre, aut] ,
Franziska Eidloth [aut],
Bilal Asser [aut]
Maintainer: Andreas Busjahn <andreas@busjahn.net>
Diff between wrappedtools versions 0.9.8 dated 2025-07-10 and 0.9.9 dated 2025-09-04
wrappedtools-0.9.8/wrappedtools/tests/testthat/compare2numvars_out.rda |only wrappedtools-0.9.8/wrappedtools/tests/testthat/test-compare_2_numvars.R |only wrappedtools-0.9.9/wrappedtools/DESCRIPTION | 10 wrappedtools-0.9.9/wrappedtools/MD5 | 24 wrappedtools-0.9.9/wrappedtools/NEWS.md | 4 wrappedtools-0.9.9/wrappedtools/R/basefunctions.R | 244 wrappedtools-0.9.9/wrappedtools/R/pkgstart.R | 115 wrappedtools-0.9.9/wrappedtools/R/tests.R | 2741 +++++----- wrappedtools-0.9.9/wrappedtools/inst/doc/wrappedtools.html | 6 wrappedtools-0.9.9/wrappedtools/man/ColSeeker.Rd | 8 wrappedtools-0.9.9/wrappedtools/man/bt.Rd | 2 wrappedtools-0.9.9/wrappedtools/man/compare_n_numvars.Rd | 1 wrappedtools-0.9.9/wrappedtools/man/flex2rmd.Rd | 4 wrappedtools-0.9.9/wrappedtools/man/identical_cols.Rd | 2 14 files changed, 1588 insertions(+), 1573 deletions(-)
Title: Connect to the 'nettskjema.no' API of the University of Oslo
Description: Enables users to retrieve data, meta-data, and codebooks from
<https://nettskjema.no/>. The data from the API is richer than from
the online data portal. This package is not developed
by the University of Oslo IT. Mowinckel (2021) <doi:10.5281/zenodo.4745481>.
Author: Athanasia Mo Mowinckel [aut, cre] ,
Trym Nohr Fjoertoft [ctb]
Maintainer: Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>
Diff between nettskjemar versions 1.0.2 dated 2025-06-06 and 1.0.3 dated 2025-09-04
nettskjemar-1.0.2/nettskjemar/README.md |only nettskjemar-1.0.2/nettskjemar/inst/Nettskjema_api.png |only nettskjemar-1.0.2/nettskjemar/inst/Nettskjema_api.svg |only nettskjemar-1.0.2/nettskjemar/tests/fixtures |only nettskjemar-1.0.2/nettskjemar/vignettes/attachments.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/authentication.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/forms.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/labelled_data.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/metadata.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/nettskjemar.Rmd.orig |only nettskjemar-1.0.2/nettskjemar/vignettes/submissions.Rmd.orig |only nettskjemar-1.0.3/nettskjemar/DESCRIPTION | 13 nettskjemar-1.0.3/nettskjemar/MD5 | 190 ++- nettskjemar-1.0.3/nettskjemar/NAMESPACE | 1 nettskjemar-1.0.3/nettskjemar/NEWS.md | 8 nettskjemar-1.0.3/nettskjemar/R/nettskjemar-package.R | 4 nettskjemar-1.0.3/nettskjemar/R/ns-auth.R | 10 nettskjemar-1.0.3/nettskjemar/R/ns-data.R | 13 nettskjemar-1.0.3/nettskjemar/R/ns-data_labels.R | 24 nettskjemar-1.0.3/nettskjemar/R/ns-form.R | 29 nettskjemar-1.0.3/nettskjemar/R/ns-me.R | 7 nettskjemar-1.0.3/nettskjemar/R/ns-meta.R | 12 nettskjemar-1.0.3/nettskjemar/R/ns-sitrep.R |only nettskjemar-1.0.3/nettskjemar/R/ns-submission.R | 9 nettskjemar-1.0.3/nettskjemar/R/utils.R | 22 nettskjemar-1.0.3/nettskjemar/build/partial.rdb |binary nettskjemar-1.0.3/nettskjemar/build/vignette.rds |binary nettskjemar-1.0.3/nettskjemar/inst/WORDLIST | 121 +- nettskjemar-1.0.3/nettskjemar/inst/_vcr |only nettskjemar-1.0.3/nettskjemar/inst/doc/attachments.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/attachments.Rmd | 98 - nettskjemar-1.0.3/nettskjemar/inst/doc/attachments.html | 122 +- nettskjemar-1.0.3/nettskjemar/inst/doc/authentication.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/authentication.Rmd | 73 - nettskjemar-1.0.3/nettskjemar/inst/doc/authentication.html | 106 -- nettskjemar-1.0.3/nettskjemar/inst/doc/custom_requests.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/custom_requests.Rmd |only nettskjemar-1.0.3/nettskjemar/inst/doc/custom_requests.html |only nettskjemar-1.0.3/nettskjemar/inst/doc/forms.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/forms.Rmd | 59 - nettskjemar-1.0.3/nettskjemar/inst/doc/forms.html | 135 +- nettskjemar-1.0.3/nettskjemar/inst/doc/labelled_data.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/labelled_data.Rmd | 344 ------ nettskjemar-1.0.3/nettskjemar/inst/doc/labelled_data.html | 247 +--- nettskjemar-1.0.3/nettskjemar/inst/doc/metadata.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/metadata.Rmd | 123 -- nettskjemar-1.0.3/nettskjemar/inst/doc/metadata.html | 33 nettskjemar-1.0.3/nettskjemar/inst/doc/nettskjemar.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/nettskjemar.Rmd | 295 ----- nettskjemar-1.0.3/nettskjemar/inst/doc/nettskjemar.html | 427 ++------ nettskjemar-1.0.3/nettskjemar/inst/doc/submissions.R |only nettskjemar-1.0.3/nettskjemar/inst/doc/submissions.Rmd | 22 nettskjemar-1.0.3/nettskjemar/inst/doc/submissions.html | 529 +++++++++- nettskjemar-1.0.3/nettskjemar/inst/nettskjemar.png |only nettskjemar-1.0.3/nettskjemar/inst/nettskjemar.svg |only nettskjemar-1.0.3/nettskjemar/man/figures/logo.png |binary nettskjemar-1.0.3/nettskjemar/man/nettskjemar-package.Rd | 2 nettskjemar-1.0.3/nettskjemar/man/ns_client.Rd | 3 nettskjemar-1.0.3/nettskjemar/man/ns_get_data.Rd | 13 nettskjemar-1.0.3/nettskjemar/man/ns_get_form_reports.Rd | 11 nettskjemar-1.0.3/nettskjemar/man/ns_get_forms.Rd | 10 nettskjemar-1.0.3/nettskjemar/man/ns_get_me.Rd | 7 nettskjemar-1.0.3/nettskjemar/man/ns_get_meta.Rd | 10 nettskjemar-1.0.3/nettskjemar/man/ns_get_submission.Rd | 9 nettskjemar-1.0.3/nettskjemar/man/ns_sitrep.Rd |only nettskjemar-1.0.3/nettskjemar/tests/_vcr |only nettskjemar-1.0.3/nettskjemar/tests/testthat/helpers.R | 18 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-data_labels.R | 6 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-ns-attachment.R | 11 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-ns-auth.R | 20 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-ns-codebook.R | 7 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-ns-me.R | 4 nettskjemar-1.0.3/nettskjemar/tests/testthat/test-ns-meta.R | 12 nettskjemar-1.0.3/nettskjemar/vignettes/_vcr |only nettskjemar-1.0.3/nettskjemar/vignettes/attachments.Rmd | 98 - nettskjemar-1.0.3/nettskjemar/vignettes/authentication.Rmd | 73 - nettskjemar-1.0.3/nettskjemar/vignettes/custom_requests.Rmd |only nettskjemar-1.0.3/nettskjemar/vignettes/forms.Rmd | 59 - nettskjemar-1.0.3/nettskjemar/vignettes/labelled_data.Rmd | 344 ------ nettskjemar-1.0.3/nettskjemar/vignettes/metadata.Rmd | 123 -- nettskjemar-1.0.3/nettskjemar/vignettes/nettskjemar.Rmd | 295 ----- nettskjemar-1.0.3/nettskjemar/vignettes/submissions.Rmd | 22 82 files changed, 1800 insertions(+), 2433 deletions(-)
Title: Accessing 'SimFin' Data
Description: Through simfinapi, you can intuitively access the 'SimFin'
Web-API (<https://www.simfin.com/>) to make 'SimFin' data easily
available in R. To obtain an 'SimFin' API key (and thus to use this
package), you need to register at <https://app.simfin.com/login>.
Author: Matthias Gomolka [aut, cre]
Maintainer: Matthias Gomolka <matthias.gomolka@posteo.de>
Diff between simfinapi versions 1.0.0 dated 2024-02-27 and 1.0.1 dated 2025-09-04
simfinapi-1.0.0/simfinapi/tests/testthat/test-sfa_load_statement.R |only simfinapi-1.0.1/simfinapi/DESCRIPTION | 10 simfinapi-1.0.1/simfinapi/MD5 | 56 +- simfinapi-1.0.1/simfinapi/NEWS.md | 4 simfinapi-1.0.1/simfinapi/R/call_api.R | 3 simfinapi-1.0.1/simfinapi/R/check_inputs.R | 204 +++++----- simfinapi-1.0.1/simfinapi/R/sfa_load__shares_outstanding.R | 22 - simfinapi-1.0.1/simfinapi/R/sfa_load_companies.R | 7 simfinapi-1.0.1/simfinapi/R/sfa_load_shareprices.R | 5 simfinapi-1.0.1/simfinapi/R/sfa_load_statement.R | 13 simfinapi-1.0.1/simfinapi/R/sfa_set_api_key.R | 4 simfinapi-1.0.1/simfinapi/R/utils.R | 5 simfinapi-1.0.1/simfinapi/R/zzz.R | 6 simfinapi-1.0.1/simfinapi/README.md | 107 +---- simfinapi-1.0.1/simfinapi/build/vignette.rds |binary simfinapi-1.0.1/simfinapi/inst/doc/simfinapi.R | 4 simfinapi-1.0.1/simfinapi/inst/doc/simfinapi.Rmd | 4 simfinapi-1.0.1/simfinapi/inst/doc/simfinapi.html | 1 simfinapi-1.0.1/simfinapi/man/figures/README-plot_data-1.png |binary simfinapi-1.0.1/simfinapi/man/sfa_load_common_shares_outstanding.Rd | 2 simfinapi-1.0.1/simfinapi/man/sfa_load_shareprices.Rd | 2 simfinapi-1.0.1/simfinapi/man/sfa_load_statements.Rd | 2 simfinapi-1.0.1/simfinapi/man/sfa_load_weighted_shares_outstanding.Rd | 2 simfinapi-1.0.1/simfinapi/man/sfa_set_api_key.Rd | 4 simfinapi-1.0.1/simfinapi/tests/testthat/test-call_api.R | 3 simfinapi-1.0.1/simfinapi/tests/testthat/test-sfa_load_companies.R | 19 simfinapi-1.0.1/simfinapi/tests/testthat/test-sfa_load_statements.R |only simfinapi-1.0.1/simfinapi/tests/testthat/test-sfa_set_cache_dir.R | 6 simfinapi-1.0.1/simfinapi/tests/testthat/test-sfa_set_key.R | 6 simfinapi-1.0.1/simfinapi/vignettes/simfinapi.Rmd | 4 30 files changed, 234 insertions(+), 271 deletions(-)
Title: Calculations and Visualisations Related to Geometric
Morphometrics
Description: A toolset for Geometric Morphometrics and mesh processing. This
includes (among other stuff) mesh deformations based on reference points,
permutation tests, detection of outliers, processing of sliding
semi-landmarks and semi-automated surface landmark placement.
Author: Stefan Schlager [aut, cre, cph],
Gregory Jefferis [ctb],
Dryden Ian [cph]
Maintainer: Stefan Schlager <zarquon42@gmail.com>
Diff between Morpho versions 2.12 dated 2023-12-06 and 2.13 dated 2025-09-04
DESCRIPTION | 16 +++++++-------- MD5 | 48 +++++++++++++++++++++++++++------------------- NAMESPACE | 11 ++++++++++ R/ILDS.r |only R/Morpho-package.R | 6 ++--- R/computeArea.r | 4 ++- R/icpmat.r | 29 +++++++++++++++++++++++++-- R/inscribeEllipse.r |only R/meshDist.r | 10 ++++----- R/meshDistMatrix.r | 2 - R/prcompfast.r | 2 - R/virtualMeshScan.r | 2 - R/warpmovie.matrix.r | 2 - inst/NEWS.Rd | 17 ++++++++++++++++ man/ILDS.Rd |only man/ILDSR2.Rd |only man/Morpho-package.Rd | 30 ++++++++++++++-------------- man/getOuterViewpoints.Rd | 2 - man/icpmat.Rd | 10 +++++++-- man/inscribeEllipse.Rd |only man/inscribeEllipseRot.Rd |only man/meshDist.Rd | 6 ++--- man/plot.ILDSR2.Rd |only man/render.Rd | 4 +-- man/visualize.Rd |only man/warpmovie3d.Rd | 2 - src/Makevars | 3 +- src/init.c | 4 +++ src/inscribeEllipse.cpp |only src/inscribeEllipse.h |only 30 files changed, 143 insertions(+), 67 deletions(-)
Title: Gradient-Based Recognition of Spatial Patterns in Environmental
Data
Description: Provides algorithms for detection of spatial patterns from oceanographic data using image processing methods based on Gradient Recognition.
Author: Wencheng Lau-Medrano [aut, cre]
Maintainer: Wencheng Lau-Medrano <luis.laum@gmail.com>
Diff between grec versions 1.6.1 dated 2025-01-23 and 1.6.2 dated 2025-09-04
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS.md | 3 +++ R/SpatRaster-class.R | 26 ++++++++------------------ R/grec-main.R | 8 ++++---- R/grec-package.R | 2 +- build/partial.rdb |binary man/getGradients.Rd | 8 ++++---- 9 files changed, 33 insertions(+), 39 deletions(-)
Title: Generalized Linear Models for Categorical Responses
Description: In statistical modeling, there is a wide variety of regression models for categorical dependent variables (nominal or ordinal data); yet, there is no software embracing all these models together in a uniform and generalized format. Following the methodology proposed by Peyhardi, Trottier, and Guédon (2015) <doi:10.1093/biomet/asv042>, we introduce 'GLMcat', an R package to estimate generalized linear models implemented under the unified specification (r, F, Z). Where r represents the ratio of probabilities (reference, cumulative, adjacent, or sequential), F the cumulative cdf function for the linkage, and Z, the design matrix. The package accompanies the paper "GLMcat: An R Package for Generalized Linear Models for Categorical Responses" in the Journal of Statistical Software, Volume 114, Issue 9 (see <doi:10.18637/jss.v114.i09>).
Author: Lorena Leon [aut, cre],
Jean Peyhardi [aut],
Catherine Trottier [aut]
Maintainer: Lorena Leon <ylorenaleonv@gmail.com>
Diff between GLMcat versions 0.2.7 dated 2024-09-20 and 1.0.0 dated 2025-09-04
DESCRIPTION | 10 - MD5 | 19 +-- NEWS.md | 7 + build/vignette.rds |binary inst/CITATION |only inst/doc/Discrete_CM_examples.pdf |binary inst/doc/GLMcat_tutorial.R | 4 inst/doc/GLMcat_tutorial.pdf |binary inst/doc/Var_sel_ex.pdf |binary man/discrete_cm.Rd | 207 +++++++++++++++++++------------------- man/glmcat.Rd | 175 ++++++++++++++++---------------- 11 files changed, 217 insertions(+), 205 deletions(-)
Title: Microsoft Finance Time Series Forecasting Framework
Description: Automated time series forecasting developed by Microsoft Finance. The Microsoft Finance Time
Series Forecasting Framework, aka Finn, can be used to forecast any component of the income
statement, balance sheet, or any other area of interest by finance. Any numerical quantity over time,
Finn can be used to forecast it. While it can be applied outside of the finance domain, Finn was built
to meet the needs of financial analysts to better forecast their businesses within a company, and has
a lot of built in features that are specific to the needs of financial forecasters. Happy forecasting!
Author: Mike Tokic [aut, cre] ,
Aadharsh Kannan [aut]
Maintainer: Mike Tokic <mftokic@gmail.com>
Diff between finnts versions 0.5.0 dated 2024-10-25 and 0.6.0 dated 2025-09-04
DESCRIPTION | 10 +-- MD5 | 42 ++++++------- NEWS.md | 16 +++++ R/ensemble_models.R | 2 R/feature_selection.R | 14 +++- R/final_models.R | 25 +++++--- R/forecast_time_series.R | 3 R/hierarchy.R | 6 + R/models.R | 41 ++++++++++--- R/multistep_helper.R | 2 R/prep_data.R | 25 -------- R/prep_models.R | 37 +++++++++--- R/train_models.R | 58 ++++++++++++++++++- R/utility.R | 2 inst/doc/back-testing-and-hyperparameter-tuning.html | 10 +-- inst/doc/models-used-in-finnts.R | 10 +-- inst/doc/models-used-in-finnts.Rmd | 10 +-- inst/doc/models-used-in-finnts.html | 2 man/forecast_time_series.Rd | 3 man/prep_data.Rd | 3 man/prep_models.Rd | 7 +- vignettes/models-used-in-finnts.Rmd | 10 +-- 22 files changed, 222 insertions(+), 116 deletions(-)
Title: Epigenome-Wide Mediation Analysis Study
Description: DNA methylation is essential for human, and environment can change the DNA methylation
and affect body status. Epigenome-Wide Mediation Analysis Study (EMAS) can find
potential mediator CpG sites between exposure (x) and outcome (y) in epigenome-wide.
For more information on the methods we used, please see the following references:
Tingley, D. (2014) <doi:10.18637/jss.v059.i05>,
Turner, S. D. (2018) <doi:10.21105/joss.00731>,
Rosseel, D. (2012) <doi:10.18637/jss.v048.i02>.
Author: Xiuquan Nie [aut, cph, cre],
Mengyi Wang [ctb, rev]
Maintainer: Xiuquan Nie <niexiuquan1995@foxmail.com>
Diff between EMAS versions 0.2.2 dated 2022-08-11 and 0.2.3 dated 2025-09-04
DESCRIPTION | 22 +++++++++------------- MD5 | 16 ++++++++-------- R/EMAS.manhattan.R | 2 +- R/Emas.R | 4 +--- R/Emas.parallel.R | 2 +- build/partial.rdb |binary man/EMAS.manhattan.Rd | 2 +- man/Emas.Rd | 4 +--- man/Emas.parallel.Rd | 2 +- 9 files changed, 23 insertions(+), 31 deletions(-)
Title: Ensemble Learning Framework for Diagnostic and Prognostic
Modeling
Description: Provides a framework to build and evaluate diagnosis or
prognosis models using stacking, voting, and bagging ensemble
techniques with various base learners. The package also includes
tools for visualization and interpretation of models. The development
version of the package is available on 'GitHub' at
<https://github.com/xiaojie0519/E2E>. The methods
are based on the foundational work of Breiman (1996) <doi:10.1007/BF00058655>
on bagging and Wolpert (1992) <doi:10.1016/S0893-6080(05)80023-1>
on stacking.
Author: Shanjie Luan [aut, cre]
Maintainer: Shanjie Luan <Luan20050519@163.com>
Diff between E2E versions 0.0.3 dated 2025-08-26 and 0.1.0 dated 2025-09-04
E2E-0.0.3/E2E/vignettes/Dia_SHAP_Example.pdf |only E2E-0.0.3/E2E/vignettes/Diagnostic_Matrix.pdf |only E2E-0.0.3/E2E/vignettes/Diagnostic_PRC.png |only E2E-0.0.3/E2E/vignettes/Diagnostic_ROC.pdf |only E2E-0.0.3/E2E/vignettes/Pro_SHAP_Example.pdf |only E2E-0.0.3/E2E/vignettes/Prognostic_KM.pdf |only E2E-0.0.3/E2E/vignettes/Prognostic_TDROC.pdf |only E2E-0.1.0/E2E/DESCRIPTION | 6 E2E-0.1.0/E2E/MD5 | 51 +- E2E-0.1.0/E2E/NAMESPACE | 3 E2E-0.1.0/E2E/R/Figure.R | 47 +- E2E-0.1.0/E2E/R/diagnosis.R | 513 +++++++++++++++--------- E2E-0.1.0/E2E/README.md | 4 E2E-0.1.0/E2E/build/vignette.rds |binary E2E-0.1.0/E2E/inst/doc/diagnostic-workflow.R | 23 - E2E-0.1.0/E2E/inst/doc/diagnostic-workflow.Rmd | 23 - E2E-0.1.0/E2E/inst/doc/diagnostic-workflow.html | 110 +---- E2E-0.1.0/E2E/inst/doc/getting-started.Rmd | 6 E2E-0.1.0/E2E/inst/doc/getting-started.html | 14 E2E-0.1.0/E2E/inst/doc/parameter-reference.Rmd |only E2E-0.1.0/E2E/inst/doc/parameter-reference.html |only E2E-0.1.0/E2E/inst/doc/prognostic-workflow.R | 2 E2E-0.1.0/E2E/inst/doc/prognostic-workflow.Rmd | 2 E2E-0.1.0/E2E/inst/doc/prognostic-workflow.html | 2 E2E-0.1.0/E2E/man/apply_dia.Rd | 85 ++- E2E-0.1.0/E2E/man/bagging_dia.Rd | 10 E2E-0.1.0/E2E/man/evaluate_model_dia.Rd | 13 E2E-0.1.0/E2E/man/evaluate_predictions_dia.Rd |only E2E-0.1.0/E2E/vignettes/diagnostic-workflow.Rmd | 23 - E2E-0.1.0/E2E/vignettes/getting-started.Rmd | 6 E2E-0.1.0/E2E/vignettes/parameter-reference.Rmd |only E2E-0.1.0/E2E/vignettes/prognostic-workflow.Rmd | 2 32 files changed, 499 insertions(+), 446 deletions(-)
Title: Tokenization, Parts of Speech Tagging, Lemmatization and
Dependency Parsing with the 'UDPipe' 'NLP' Toolkit
Description: This natural language processing toolkit provides language-agnostic
'tokenization', 'parts of speech tagging', 'lemmatization' and 'dependency
parsing' of raw text. Next to text parsing, the package also allows you to train
annotation models based on data of 'treebanks' in 'CoNLL-U' format as provided
at <https://universaldependencies.org/format.html>. The techniques are explained
in detail in the paper: 'Tokenizing, POS Tagging, Lemmatizing and Parsing UD 2.0
with UDPipe', available at <doi:10.18653/v1/K17-3009>.
The toolkit also contains functionalities for commonly used data manipulations on texts
which are enriched with the output of the parser. Namely functionalities and algorithms
for collocations, token co-occurrence, document term matrix handling,
term frequency inverse document frequency calculations,
information retrieval metrics (Okapi BM25), handling of multi-word expressions,
keyword detection (Rapid Automatic Keyword Extraction, noun phrase extraction, syntact [...truncated...]
Author: Jan Wijffels [aut, cre, cph],
BNOSAC [cph],
Institute of Formal and Applied Linguistics, Faculty of Mathematics and
Physics, Charles University in Prague, Czech Republic [cph],
Milan Straka [ctb, cph],
Jana Strakova [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between udpipe versions 0.8.11 dated 2023-01-06 and 0.8.12 dated 2025-09-04
DESCRIPTION | 6 - MD5 | 60 +++++++++--------- NEWS.md | 8 ++ R/datasets.R | 10 +-- R/topicmodels.R | 8 +- R/udpipe_models.R | 58 ++++++++--------- R/udpipe_parse.R | 48 +++++++------- R/udpipe_train.R | 16 ++-- R/utils.R | 13 +-- build/vignette.rds |binary inst/doc/udpipe-annotation.Rmd | 2 inst/doc/udpipe-annotation.html | 6 - inst/doc/udpipe-parallel.html | 6 - inst/doc/udpipe-train.html | 6 - inst/doc/udpipe-tryitout.html | 4 - inst/doc/udpipe-universe.html | 4 - inst/doc/udpipe-usecase-postagging-lemmatisation.html | 4 - inst/doc/udpipe-usecase-topicmodelling.html | 4 - man/brussels_listings.Rd | 4 - man/brussels_reviews.Rd | 4 - man/brussels_reviews_anno.Rd | 2 man/predict.LDA.Rd | 8 +- man/txt_tagsequence.Rd | 13 +-- man/udpipe.Rd | 40 ++++++------ man/udpipe_accuracy.Rd | 4 - man/udpipe_annotate.Rd | 8 +- man/udpipe_download_model.Rd | 54 ++++++++-------- man/udpipe_load_model.Rd | 4 - man/udpipe_train.Rd | 12 +-- src/udpipe.cpp | 6 - vignettes/udpipe-annotation.Rmd | 2 31 files changed, 215 insertions(+), 209 deletions(-)
Title: Analysis and Visualization of Archaeological Count Data
Description: An easy way to examine archaeological count data. This
package provides several tests and measures of diversity:
heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.),
richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and
similarity (Brainerd-Robinson, etc.). It allows to easily visualize
count data and statistical thresholds: rank vs abundance plots,
heatmaps, Ford (1962) and Bertin (1977) diagrams, etc.
Author: Nicolas Frerebeau [aut, cre] ,
Matthew Peeples [ctb] ,
Ben Marwick [ctb] ,
Jean-Baptiste Fourvel [ctb] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between tabula versions 3.3.1 dated 2025-05-15 and 3.3.2 dated 2025-09-04
DESCRIPTION | 11 ++++++----- MD5 | 24 ++++++++++++------------ NEWS.md | 4 ++++ R/plot_ford.R | 5 ++++- R/tabula-package.R | 2 +- README.md | 17 ++++++++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/alpha.html | 2 +- inst/doc/beta.html | 2 +- inst/po/fr/LC_MESSAGES/R-tabula.mo |binary man/tabula-package.Rd | 3 ++- po/R-fr.po | 4 ++-- 13 files changed, 45 insertions(+), 29 deletions(-)
Title: R Interface to 'Quarto' Markdown Publishing System
Description: Convert R Markdown documents and 'Jupyter' notebooks to a
variety of output formats using 'Quarto'.
Author: JJ Allaire [aut] ,
Christophe Dervieux [cre, aut] ,
Posit Software, PBC [cph, fnd],
Gordon Woodhull [ctb]
Maintainer: Christophe Dervieux <cderv@posit.co>
Diff between quarto versions 1.5.0 dated 2025-07-28 and 1.5.1 dated 2025-09-04
DESCRIPTION | 6 MD5 | 26 - NEWS.md | 467 +++++++++++++++++----------------- R/render.R | 459 ++++++++++++++++----------------- inst/doc/advanced-vignettes.html | 2 inst/doc/dynamic-metadata.html | 6 inst/doc/hello-pdf.pdf |binary inst/doc/hello.html | 2 inst/doc/publishing.html | 2 inst/doc/r-scripts.html | 6 man/quarto_render.Rd | 251 +++++++++--------- tests/testthat/helpers.R | 4 tests/testthat/test-utils-extract.R | 2 tests/testthat/test-utils.R | 494 ++++++++++++++++++------------------ 14 files changed, 867 insertions(+), 860 deletions(-)
Title: Khattree-Bahuguna's Univariate and Multivariate Skewness
Description: Computes Khattree-Bahuguna's univariate and multivariate skewness, principal-component-based Khattree-Bahuguna's multivariate skewness. It also provides several measures of univariate or multivariate skewnesses including, Pearson’s coefficient of skewness, Bowley’s univariate skewness and Mardia's multivariate skewness. See Khattree, R. and Bahuguna, M. (2019) <doi: 10.1007/s41060-018-0106-1>.
Author: Zhixin Lun [aut, cre] ,
Ravindra Khattree [aut]
Maintainer: Zhixin Lun <zhixin.lun@cuanschutz.edu>
Diff between KbMvtSkew versions 1.0.2 dated 2020-03-23 and 1.1.0 dated 2025-09-04
DESCRIPTION | 22 +++++++++++----------- MD5 | 18 +++++++++--------- NAMESPACE | 22 +++++++++++----------- R/KbSkewness.R | 12 ++++++++---- man/data-Chatterjee.Rd | 4 +++- man/data-OlymWomen.Rd | 4 +++- man/data-SwissHead.Rd | 4 +++- man/kbMvtSkew.Rd | 6 ++++-- man/kbSkew.Rd | 2 ++ man/pcKbSkew.Rd | 4 ++-- 10 files changed, 56 insertions(+), 42 deletions(-)
Title: A Unified Data Layer for Large-Scale Single-Cell, Spatial and
Bulk Immunomics
Description: Provides a unified data layer for single-cell, spatial and bulk
T-cell and B-cell immune receptor repertoire data. Think AnnData or SeuratObject,
but for AIRR data.
Author: Vadim I. Nazarov [aut, cre]
Maintainer: Vadim I. Nazarov <support@immunomind.com>
Diff between immundata versions 0.0.1 dated 2025-04-08 and 0.0.3 dated 2025-09-04
immundata-0.0.1/immundata/R/immundata.R |only immundata-0.0.1/immundata/R/load_immundata.R |only immundata-0.0.1/immundata/R/load_metadata.R |only immundata-0.0.1/immundata/R/load_repertoires.R |only immundata-0.0.1/immundata/R/load_repertoires_utils.R |only immundata-0.0.1/immundata/R/mouse-ici.R |only immundata-0.0.1/immundata/R/receptor_schema.R |only immundata-0.0.1/immundata/R/utils.R |only immundata-0.0.1/immundata/inst/extdata/metadata_samples.tsv |only immundata-0.0.1/immundata/inst/extdata/sample_0_1k.tsv |only immundata-0.0.1/immundata/inst/extdata/sample_1k_2k.tsv |only immundata-0.0.1/immundata/man/imd_files.Rd |only immundata-0.0.1/immundata/man/load_immundata.Rd |only immundata-0.0.1/immundata/man/load_metadata.Rd |only immundata-0.0.1/immundata/man/load_repertoires.Rd |only immundata-0.0.1/immundata/tests/testthat/test-data-manipulation.R |only immundata-0.0.3/immundata/DESCRIPTION | 31 immundata-0.0.3/immundata/MD5 | 96 immundata-0.0.3/immundata/NAMESPACE | 67 immundata-0.0.3/immundata/R/core_immundata.R |only immundata-0.0.3/immundata/R/globals.R | 181 + immundata-0.0.3/immundata/R/immundata-package.R | 53 immundata-0.0.3/immundata/R/io_annotations_write.R |only immundata-0.0.3/immundata/R/io_immundata_conversion.R |only immundata-0.0.3/immundata/R/io_immundata_read.R |only immundata-0.0.3/immundata/R/io_immundata_write.R |only immundata-0.0.3/immundata/R/io_metadata_read.R |only immundata-0.0.3/immundata/R/io_repertoires_processing.R |only immundata-0.0.3/immundata/R/io_repertoires_read.R |only immundata-0.0.3/immundata/R/io_repertoires_utils.R |only immundata-0.0.3/immundata/R/operations_agg.R |only immundata-0.0.3/immundata/R/operations_annotate.R |only immundata-0.0.3/immundata/R/operations_count.R |only immundata-0.0.3/immundata/R/operations_filter.R |only immundata-0.0.3/immundata/R/operations_mutate.R |only immundata-0.0.3/immundata/R/operations_print.R |only immundata-0.0.3/immundata/R/operations_utils.R |only immundata-0.0.3/immundata/R/operations_utils_levenshtein.R |only immundata-0.0.3/immundata/R/test_utils.R |only immundata-0.0.3/immundata/R/zzz.R | 1 immundata-0.0.3/immundata/README.md | 1360 +++++++++- immundata-0.0.3/immundata/inst/extdata/single_cell |only immundata-0.0.3/immundata/inst/extdata/tsv |only immundata-0.0.3/immundata/man/IMD_GLOBALS.Rd | 4 immundata-0.0.3/immundata/man/ImmunData.Rd | 124 immundata-0.0.3/immundata/man/agg_receptors.Rd |only immundata-0.0.3/immundata/man/agg_repertoires.Rd |only immundata-0.0.3/immundata/man/annotate_immundata.Rd |only immundata-0.0.3/immundata/man/count.ImmunData.Rd |only immundata-0.0.3/immundata/man/filter_immundata.Rd |only immundata-0.0.3/immundata/man/from_immunarch.Rd |only immundata-0.0.3/immundata/man/get_test_idata.Rd |only immundata-0.0.3/immundata/man/imd_schema.Rd | 39 immundata-0.0.3/immundata/man/immundata-package.Rd | 14 immundata-0.0.3/immundata/man/make_receptor_schema.Rd |only immundata-0.0.3/immundata/man/make_seq_options.Rd |only immundata-0.0.3/immundata/man/mutate_immundata.Rd |only immundata-0.0.3/immundata/man/preprocess_postprocess.Rd |only immundata-0.0.3/immundata/man/read_immundata.Rd |only immundata-0.0.3/immundata/man/read_metadata.Rd |only immundata-0.0.3/immundata/man/read_repertoires.Rd |only immundata-0.0.3/immundata/man/write_immundata.Rd |only immundata-0.0.3/immundata/tests/testthat/test-annotate-barcodes.R |only immundata-0.0.3/immundata/tests/testthat/test-annotate-immundata.R |only immundata-0.0.3/immundata/tests/testthat/test-annotate-receptors.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-barcodes.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-immundata-exact.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-immundata-hamm.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-immundata-lev.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-immundata-regex.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-immundata.R |only immundata-0.0.3/immundata/tests/testthat/test-filter-receptors.R |only immundata-0.0.3/immundata/tests/testthat/test-io-immundata-read.R |only immundata-0.0.3/immundata/tests/testthat/test-io-immundata-write.R |only immundata-0.0.3/immundata/tests/testthat/test-io-repertoires.R |only 75 files changed, 1662 insertions(+), 308 deletions(-)
Title: Cytokine Profiling Analysis Tool
Description: Provides comprehensive cytokine profiling analysis through quality control using biologically meaningful cutoffs on raw cytokine measurements and by testing for distributional symmetry to recommend appropriate transformations. Offers exploratory data analysis with summary statistics, enhanced boxplots, and barplots, along with univariate and multivariate analytical capabilities for in-depth cytokine profiling such as Principal Component Analysis based on Andrzej Maćkiewicz and Waldemar Ratajczak (1993) <doi:10.1016/0098-3004(93)90090-R>, Sparse Partial Least Squares Discriminant Analysis based on Lê Cao K-A, Boitard S, and Besse P (2011) <doi:10.1186/1471-2105-12-253>, Random Forest based on Breiman, L. (2001) <doi:10.1023/A:1010933404324>, and Extreme Gradient Boosting based on Tianqi Chen and Carlos Guestrin (2016) <doi:10.1145/2939672.2939785>.
Author: Shubh Saraswat [cre, aut, cph] ,
Xiaohua Douglas Zhang [aut]
Maintainer: Shubh Saraswat <shubh.saraswat00@gmail.com>
Diff between CytoProfile versions 0.2.1 dated 2025-05-19 and 0.2.2 dated 2025-09-04
DESCRIPTION | 8 MD5 | 123 ++-- NAMESPACE | 6 NEWS.md | 21 R/cyt_anova.R | 39 - R/cyt_bp.R | 39 - R/cyt_bp2.R | 44 - R/cyt_dualflashplot.R | 71 +- R/cyt_errbp.R | 443 ++++++++------ R/cyt_heatmap.R | 204 ++++-- R/cyt_mint_splsda.R |only R/cyt_pca.R | 460 ++++++++++----- R/cyt_rf.R | 187 +++++- R/cyt_skku.R | 79 +- R/cyt_splsda.R | 966 +++++++++++++++++++++----------- R/cyt_ttest.R | 7 R/cyt_volc.R | 81 +- R/cyt_xgb.R | 162 +++-- R/data.R | 54 + README.md | 45 + data/ExampleData5.rda |only inst/WORDLIST | 14 inst/doc/getting_started.R | 23 inst/doc/getting_started.Rmd | 38 - inst/doc/getting_started.html | 291 +++++---- man/ExampleData5.Rd |only man/cyt_anova.Rd | 3 man/cyt_bp.Rd | 3 man/cyt_bp2.Rd | 3 man/cyt_dualflashplot.Rd | 3 man/cyt_errbp.Rd | 7 man/cyt_heatmap.Rd | 30 man/cyt_mint_splsda.Rd |only man/cyt_pca.Rd | 3 man/cyt_rf.Rd | 3 man/cyt_skku.Rd | 3 man/cyt_splsda.Rd | 29 man/cyt_ttest.Rd | 3 man/cyt_volc.Rd | 3 man/cyt_xgb.Rd | 3 man/figures/logo.png |binary man/figures/readme-EDA2-1.png |binary man/figures/readme-EDA2-2.png |binary man/figures/readme-EDA2-3.png |binary man/figures/readme-EDA2-4.png |binary man/figures/readme-EDA6-1.png |binary man/figures/readme-EDA7-1.png |binary man/figures/readme-Multivariate1-10.png |binary man/figures/readme-Multivariate1-4.png |binary man/figures/readme-Multivariate1-5.png |binary man/figures/readme-Multivariate1-6.png |binary man/figures/readme-Multivariate1-7.png |binary man/figures/readme-Multivariate1-9.png |binary man/figures/readme-Multivariate2-1.png |binary man/figures/readme-Multivariate2-2.png |binary man/figures/readme-Multivariate2-3.png |binary man/figures/readme-Multivariate2-4.png |binary man/figures/readme-Multivariate2-5.png |binary man/figures/readme-Multivariate2-6.png |binary man/figures/readme-Multivariate2-7.png |only man/figures/readme-Multivariate2-8.png |only man/figures/readme-Multivariate2-9.png |only man/figures/readme-Multivariate3-1.png |only man/figures/readme-Multivariate3-2.png |only man/figures/readme-Multivariate3-3.png |only man/figures/readme-Multivariate3-4.png |only man/figures/readme-Multivariate3-5.png |only man/figures/readme-Multivariate3-6.png |only vignettes/getting_started.Rmd | 38 - 69 files changed, 2372 insertions(+), 1167 deletions(-)
Title: Conditional Multivariate t Distribution, Expectation
Maximization Algorithm, and Its Stochastic Variants
Description: Computes conditional multivariate t probabilities, random deviates, and densities. It can also be used to create missing values at random in a dataset, resulting in a missing at random (MAR) mechanism. Inbuilt in the package are the Expectation-Maximization (EM), Monte Carlo EM, and Stochastic EM algorithms for imputation of missing values in datasets assuming the multivariate t distribution. See Kinyanjui, Tamba, Orawo, and Okenye (2020)<doi:10.3233/mas-200493>, and Kinyanjui, Tamba, and Okenye(2021)<http://www.ceser.in/ceserp/index.php/ijamas/article/view/6726/0> for more details.
Author: Paul Kinyanjui [aut, cre],
Cox Tamba [aut],
Justin Okenye [aut],
Luke Orawo [ctb]
Maintainer: Paul Kinyanjui <kinyanjui.access@gmail.com>
Diff between CondMVT versions 0.1.0 dated 2022-06-28 and 0.1.1 dated 2025-09-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/SMCEM_Uonestep.R | 3 ++- man/pcmvt.Rd | 2 +- 4 files changed, 10 insertions(+), 9 deletions(-)
Title: Transformation Discriminant Analysis
Description: Performs transformation discrimination analysis and non-transformation discrimination analysis. It also includes functions for Linear Discriminant Analysis, Quadratic Discriminant Analysis, and Mixture Discriminant Analysis. In the context of mixture discriminant analysis, it offers options for both common covariance matrix (common sigma) and individual covariance matrices (uncommon sigma) for the mixture components.
Author: Jing Li [aut, cre],
Yana Melnykov [aut]
Maintainer: Jing Li <jli178@crimson.ua.edu>
Diff between transDA versions 1.0.1 dated 2025-06-09 and 1.0.2 dated 2025-09-04
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/tda.R | 2 +- demo/demotda.R | 8 ++++---- man/predict.tda.Rd | 2 +- man/summary.tda.Rd | 2 +- man/tda.Rd | 10 +++++----- man/transDA-package.Rd | 9 ++++----- 8 files changed, 27 insertions(+), 28 deletions(-)
Title: Interface to the Global Biodiversity Information Facility API
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility (GBIF;
<https://www.gbif.org/developer/summary>). GBIF is a database
of species occurrence records from sources all over the globe.
rgbif includes functions for searching for taxonomic names,
retrieving information on data providers, getting species occurrence
records, getting counts of occurrence records, and using the GBIF
tile map service to make rasters summarizing huge amounts of data.
Author: Scott Chamberlain [aut] ,
Damiano Oldoni [aut] ,
Vijay Barve [ctb] ,
Peter Desmet [ctb] ,
Laurens Geffert [ctb],
Dan Mcglinn [ctb] ,
Karthik Ram [ctb] ,
rOpenSci [fnd] ,
John Waller [aut, cre]
Maintainer: John Waller <jwaller@gbif.org>
Diff between rgbif versions 3.8.2 dated 2025-06-12 and 3.8.3 dated 2025-09-04
rgbif-3.8.2/rgbif/tests/fixtures/name_parse.yml |only rgbif-3.8.3/rgbif/DESCRIPTION | 8 rgbif-3.8.3/rgbif/MD5 | 492 rgbif-3.8.3/rgbif/NAMESPACE | 13 rgbif-3.8.3/rgbif/NEWS.md | 12 rgbif-3.8.3/rgbif/R/collection_search.R |only rgbif-3.8.3/rgbif/R/dataset.R | 4 rgbif-3.8.3/rgbif/R/dataset_doi.R | 5 rgbif-3.8.3/rgbif/R/dataset_list_funs.R | 4 rgbif-3.8.3/rgbif/R/dataset_search.r | 22 rgbif-3.8.3/rgbif/R/dataset_suggest.r | 2 rgbif-3.8.3/rgbif/R/dataset_uuid_funs.R | 22 rgbif-3.8.3/rgbif/R/datasets.r | 2 rgbif-3.8.3/rgbif/R/derived_dataset.R | 4 rgbif-3.8.3/rgbif/R/elevation.r | 2 rgbif-3.8.3/rgbif/R/enumeration.R | 70 rgbif-3.8.3/rgbif/R/gbif_geocode.R | 6 rgbif-3.8.3/rgbif/R/installation_search.R |only rgbif-3.8.3/rgbif/R/installation_uuid_funs.R |only rgbif-3.8.3/rgbif/R/installations.r | 144 rgbif-3.8.3/rgbif/R/institution_search.R |only rgbif-3.8.3/rgbif/R/lit_search.R | 106 rgbif-3.8.3/rgbif/R/name_backbone.r | 4 rgbif-3.8.3/rgbif/R/name_backbone_checklist.R | 4 rgbif-3.8.3/rgbif/R/name_lookup.r | 2 rgbif-3.8.3/rgbif/R/name_parse.R | 2 rgbif-3.8.3/rgbif/R/name_suggest.r | 3 rgbif-3.8.3/rgbif/R/name_usage.r | 5 rgbif-3.8.3/rgbif/R/network.R | 2 rgbif-3.8.3/rgbif/R/networks.r | 2 rgbif-3.8.3/rgbif/R/nodes.r | 194 rgbif-3.8.3/rgbif/R/occ_count.r | 6 rgbif-3.8.3/rgbif/R/occ_count_.R | 2 rgbif-3.8.3/rgbif/R/occ_download.R | 7 rgbif-3.8.3/rgbif/R/occ_download_cached.R | 2 rgbif-3.8.3/rgbif/R/occ_download_cancel.R | 116 rgbif-3.8.3/rgbif/R/occ_download_dataset_activity.R | 94 rgbif-3.8.3/rgbif/R/occ_download_datasets.R | 82 rgbif-3.8.3/rgbif/R/occ_download_describe.R | 6 rgbif-3.8.3/rgbif/R/occ_download_doi.R | 7 rgbif-3.8.3/rgbif/R/occ_download_list.R | 116 rgbif-3.8.3/rgbif/R/occ_download_meta.R | 4 rgbif-3.8.3/rgbif/R/occ_download_sql.R | 4 rgbif-3.8.3/rgbif/R/occ_facet.R | 7 rgbif-3.8.3/rgbif/R/occ_get.r | 11 rgbif-3.8.3/rgbif/R/occ_metadata.r | 112 rgbif-3.8.3/rgbif/R/organizations.r | 7 rgbif-3.8.3/rgbif/R/print_gbif.R | 232 rgbif-3.8.3/rgbif/R/zzz.r | 65 rgbif-3.8.3/rgbif/man/collection_search.Rd |only rgbif-3.8.3/rgbif/man/dataset.Rd | 2 rgbif-3.8.3/rgbif/man/dataset_doi.Rd | 7 rgbif-3.8.3/rgbif/man/dataset_list_funs.Rd | 4 rgbif-3.8.3/rgbif/man/dataset_search.Rd | 14 rgbif-3.8.3/rgbif/man/dataset_uuid_funs.Rd | 37 rgbif-3.8.3/rgbif/man/datasets.Rd | 2 rgbif-3.8.3/rgbif/man/derived_dataset.Rd | 4 rgbif-3.8.3/rgbif/man/elevation.Rd | 2 rgbif-3.8.3/rgbif/man/enumeration.Rd | 4 rgbif-3.8.3/rgbif/man/gbif_geocode.Rd | 8 rgbif-3.8.3/rgbif/man/installation_search.Rd |only rgbif-3.8.3/rgbif/man/installation_uuid_funs.Rd |only rgbif-3.8.3/rgbif/man/installations.Rd | 2 rgbif-3.8.3/rgbif/man/institution_search.Rd |only rgbif-3.8.3/rgbif/man/lit_search.Rd | 31 rgbif-3.8.3/rgbif/man/name_backbone.Rd | 4 rgbif-3.8.3/rgbif/man/name_backbone_checklist.Rd | 2 rgbif-3.8.3/rgbif/man/name_lookup.Rd | 2 rgbif-3.8.3/rgbif/man/name_parse.Rd | 2 rgbif-3.8.3/rgbif/man/name_suggest.Rd | 2 rgbif-3.8.3/rgbif/man/name_usage.Rd | 2 rgbif-3.8.3/rgbif/man/network.Rd | 2 rgbif-3.8.3/rgbif/man/networks.Rd | 2 rgbif-3.8.3/rgbif/man/nodes.Rd | 2 rgbif-3.8.3/rgbif/man/occ_count.Rd | 2 rgbif-3.8.3/rgbif/man/occ_count_.Rd | 2 rgbif-3.8.3/rgbif/man/occ_download.Rd | 4 rgbif-3.8.3/rgbif/man/occ_download_cached.Rd | 2 rgbif-3.8.3/rgbif/man/occ_download_cancel.Rd | 9 rgbif-3.8.3/rgbif/man/occ_download_dataset_activity.Rd | 2 rgbif-3.8.3/rgbif/man/occ_download_datasets.Rd | 7 rgbif-3.8.3/rgbif/man/occ_download_describe.Rd | 5 rgbif-3.8.3/rgbif/man/occ_download_doi.Rd | 4 rgbif-3.8.3/rgbif/man/occ_download_list.Rd | 2 rgbif-3.8.3/rgbif/man/occ_download_meta.Rd | 2 rgbif-3.8.3/rgbif/man/occ_download_sql.Rd | 4 rgbif-3.8.3/rgbif/man/occ_facet.Rd | 2 rgbif-3.8.3/rgbif/man/occ_get.Rd | 4 rgbif-3.8.3/rgbif/man/occ_metadata.Rd | 2 rgbif-3.8.3/rgbif/man/organizations.Rd | 5 rgbif-3.8.3/rgbif/tests/fixtures/collection_search.yml |only rgbif-3.8.3/rgbif/tests/fixtures/dataset.yml | 1838 rgbif-3.8.3/rgbif/tests/fixtures/dataset_doi.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/dataset_list_funs.yml | 45 rgbif-3.8.3/rgbif/tests/fixtures/dataset_search.yml | 9738 rgbif-3.8.3/rgbif/tests/fixtures/dataset_search_facet.yml | 121 rgbif-3.8.3/rgbif/tests/fixtures/dataset_suggest.yml | 7363 rgbif-3.8.3/rgbif/tests/fixtures/dataset_suggest_description.yml | 2927 rgbif-3.8.3/rgbif/tests/fixtures/dataset_uuid_funs.yml |122958 +++++++++- rgbif-3.8.3/rgbif/tests/fixtures/derived_dataset_1.yml | 25 rgbif-3.8.3/rgbif/tests/fixtures/derived_dataset_2.yml | 23 rgbif-3.8.3/rgbif/tests/fixtures/elevation.yml | 61 rgbif-3.8.3/rgbif/tests/fixtures/elevation_geonames_conn.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/elevation_geonames_conn_unauthorized.yml | 47 rgbif-3.8.3/rgbif/tests/fixtures/elevation_models.yml | 161 rgbif-3.8.3/rgbif/tests/fixtures/elevation_unauthorized.yml | 24 rgbif-3.8.3/rgbif/tests/fixtures/elevation_warning_zero_zero.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/enumeration.yml | 888 rgbif-3.8.3/rgbif/tests/fixtures/enumeration_fails_well.yml | 19 rgbif-3.8.3/rgbif/tests/fixtures/gbif_citation_downloadkey.yml | 47 rgbif-3.8.3/rgbif/tests/fixtures/gbif_citation_occ_download_meta.yml | 47 rgbif-3.8.3/rgbif/tests/fixtures/gbif_get_wait.yml |only rgbif-3.8.3/rgbif/tests/fixtures/gbif_oai_get_records.yml | 103 rgbif-3.8.3/rgbif/tests/fixtures/gbif_oai_identify.yml | 68 rgbif-3.8.3/rgbif/tests/fixtures/gbif_oai_list_identifiers.yml | 22 rgbif-3.8.3/rgbif/tests/fixtures/gbif_oai_list_metadataformats.yml | 21 rgbif-3.8.3/rgbif/tests/fixtures/gbif_oai_list_sets.yml | 2054 rgbif-3.8.3/rgbif/tests/fixtures/installation_search.yml |only rgbif-3.8.3/rgbif/tests/fixtures/installation_uuid_funs.yml |only rgbif-3.8.3/rgbif/tests/fixtures/installations.yml | 2675 rgbif-3.8.3/rgbif/tests/fixtures/installations_deleted.yml | 59 rgbif-3.8.3/rgbif/tests/fixtures/installations_uuid.yml | 19 rgbif-3.8.3/rgbif/tests/fixtures/installations_uuid_data.yml | 19 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rgbif-3.8.3/rgbif/tests/testthat/test-dataset_search.r | 11 rgbif-3.8.3/rgbif/tests/testthat/test-gbif_photos.R | 60 rgbif-3.8.3/rgbif/tests/testthat/test-installation_search.R |only rgbif-3.8.3/rgbif/tests/testthat/test-installation_uuid_funs.R |only rgbif-3.8.3/rgbif/tests/testthat/test-institution_search.R |only rgbif-3.8.3/rgbif/tests/testthat/test-lit_search.R | 35 rgbif-3.8.3/rgbif/tests/testthat/test-name_backbone_checklist.R | 190 rgbif-3.8.3/rgbif/tests/testthat/test-name_parse.R | 14 rgbif-3.8.3/rgbif/tests/testthat/test-occ_data.R | 2 rgbif-3.8.3/rgbif/tests/testthat/test-occ_download.R | 9 rgbif-3.8.3/rgbif/tests/testthat/test-occ_download_meta.R | 2 rgbif-3.8.3/rgbif/tests/testthat/test-occ_download_queue.R | 2 rgbif-3.8.3/rgbif/tests/testthat/test-occ_download_sql.R | 1 rgbif-3.8.3/rgbif/tests/testthat/test-occ_search.r | 2 rgbif-3.8.3/rgbif/tests/testthat/test-utils.R | 18 256 files changed, 184446 insertions(+), 102985 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Ben Wilson [aut, cre],
Matei Zaharia [aut],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Ben Wilson <benjamin.wilson@databricks.com>
Diff between mlflow versions 3.2.0 dated 2025-08-21 and 3.3.2 dated 2025-09-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- README.md | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Facilitate Citation of R Packages
Description: Facilitates the citation of R packages used in analysis
projects. Scans project for packages used, gets their citations, and
produces a document with citations in the preferred bibliography
format, ready to be pasted into reports or manuscripts. Alternatively,
'grateful' can be used directly within an 'R Markdown' or 'Quarto' document.
Author: Francisco Rodriguez-Sanchez [aut, cre, cph] ,
Connor P. Jackson [aut] ,
Shaurita D. Hutchins [ctb],
James M. Clawson [ctb]
Maintainer: Francisco Rodriguez-Sanchez <f.rodriguez.sanc@gmail.com>
Diff between grateful versions 0.2.12 dated 2025-04-30 and 0.3.0 dated 2025-09-04
DESCRIPTION | 17 +- MD5 | 51 ++++---- NEWS.md | 13 ++ R/cite_packages.R | 65 +++++++++- R/create_rmd.R | 8 + R/get_citations.R | 20 ++- R/get_pkgs_info.R | 14 ++ R/render_citations.R | 3 R/scan_packages.R | 123 ++++++++++++++++++- R/utils_citations.R | 28 ++++ R/write_citation_paragraph.R | 76 +++++++----- README.md | 133 ++++++++++++++++----- inst/CITATION | 2 man/cite_packages.Rd | 55 +++++++- man/figures/logo.png |only man/get_citations.Rd | 9 + man/get_pkgs_info.Rd | 27 +++- man/grateful-package.Rd | 2 man/scan_packages.Rd | 27 +++- tests/testthat/test-cite_packages.R | 57 ++++++++- tests/testthat/test-create_rmd.R | 4 tests/testthat/test-get_citations.R | 14 ++ tests/testthat/test-get_csl.R | 2 tests/testthat/test-get_pkgs_info.R | 10 + tests/testthat/test-render_citations.R | 14 +- tests/testthat/test-scan_packages.R | 207 ++++++++++++++++++++++++++++----- tests/testthat/test-utils_citations.R | 25 +++ 27 files changed, 829 insertions(+), 177 deletions(-)
Title: 'R' Bindings for the 'Boost' Math Functions
Description: 'R' bindings for the various functions and statistical distributions
provided by the 'Boost' Math library <https://www.boost.org/doc/libs/latest/libs/math/doc/html/index.html>.
Author: Andrew R. Johnson [aut, cre]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between boostmath versions 1.0.2 dated 2025-07-31 and 1.1.0 dated 2025-09-04
boostmath-1.0.2/boostmath/src/boostmath/complex_interop.hpp |only boostmath-1.0.2/boostmath/vignettes/boost-math.html |only boostmath-1.1.0/boostmath/DESCRIPTION | 6 boostmath-1.1.0/boostmath/MD5 | 125 +++- boostmath-1.1.0/boostmath/NAMESPACE | 52 + boostmath-1.1.0/boostmath/NEWS.md | 3 boostmath-1.1.0/boostmath/R/anderson_darling_test.R |only boostmath-1.1.0/boostmath/R/bivariate_statistics.R |only boostmath-1.1.0/boostmath/R/chatterjee_correlation.R |only boostmath-1.1.0/boostmath/R/constants.R |only boostmath-1.1.0/boostmath/R/interpolators.R |only boostmath-1.1.0/boostmath/R/linear_regression.R |only boostmath-1.1.0/boostmath/R/ljung_box_test.R |only boostmath-1.1.0/boostmath/R/quadrature_and_differentiation.R | 2 boostmath-1.1.0/boostmath/R/runs_tests.R |only boostmath-1.1.0/boostmath/R/signal_statistics.R |only boostmath-1.1.0/boostmath/R/t_tests.R |only boostmath-1.1.0/boostmath/R/univariate_statistics.R |only boostmath-1.1.0/boostmath/R/z_tests.R |only boostmath-1.1.0/boostmath/R/zzz.R | 4 boostmath-1.1.0/boostmath/build/vignette.rds |binary boostmath-1.1.0/boostmath/inst/doc/constants.R |only boostmath-1.1.0/boostmath/inst/doc/constants.Rmd |only boostmath-1.1.0/boostmath/inst/doc/constants.html |only boostmath-1.1.0/boostmath/inst/doc/interpolation.R |only boostmath-1.1.0/boostmath/inst/doc/interpolation.Rmd |only boostmath-1.1.0/boostmath/inst/doc/interpolation.html |only boostmath-1.1.0/boostmath/inst/doc/quadrature-differentiation.R | 4 boostmath-1.1.0/boostmath/inst/doc/quadrature-differentiation.Rmd | 4 boostmath-1.1.0/boostmath/inst/doc/quadrature-differentiation.html | 12 boostmath-1.1.0/boostmath/inst/doc/statistics.R |only boostmath-1.1.0/boostmath/inst/doc/statistics.Rmd |only boostmath-1.1.0/boostmath/inst/doc/statistics.html |only boostmath-1.1.0/boostmath/inst/doc/vector-functionals.R | 44 - boostmath-1.1.0/boostmath/inst/doc/vector-functionals.Rmd | 44 - boostmath-1.1.0/boostmath/inst/doc/vector-functionals.html | 55 +- boostmath-1.1.0/boostmath/inst/tinytest/test_constants.R |only boostmath-1.1.0/boostmath/man/anderson_darling_test.Rd |only boostmath-1.1.0/boostmath/man/barycentric_rational.Rd |only boostmath-1.1.0/boostmath/man/bezier_polynomial.Rd |only boostmath-1.1.0/boostmath/man/bilinear_uniform.Rd |only boostmath-1.1.0/boostmath/man/bivariate_statistics.Rd |only boostmath-1.1.0/boostmath/man/cardinal_cubic_b_spline.Rd |only boostmath-1.1.0/boostmath/man/cardinal_cubic_hermite.Rd |only boostmath-1.1.0/boostmath/man/cardinal_quadratic_b_spline.Rd |only boostmath-1.1.0/boostmath/man/cardinal_quintic_b_spline.Rd |only boostmath-1.1.0/boostmath/man/cardinal_quintic_hermite.Rd |only boostmath-1.1.0/boostmath/man/catmull_rom.Rd |only boostmath-1.1.0/boostmath/man/chatterjee_correlation.Rd |only boostmath-1.1.0/boostmath/man/constants.Rd |only boostmath-1.1.0/boostmath/man/cubic_hermite.Rd |only boostmath-1.1.0/boostmath/man/linear_regression.Rd |only boostmath-1.1.0/boostmath/man/ljung_box_test.Rd |only boostmath-1.1.0/boostmath/man/makima.Rd |only boostmath-1.1.0/boostmath/man/ooura_fourier_integrals.Rd | 2 boostmath-1.1.0/boostmath/man/pchip.Rd |only boostmath-1.1.0/boostmath/man/quintic_hermite.Rd |only boostmath-1.1.0/boostmath/man/runs_tests.Rd |only boostmath-1.1.0/boostmath/man/signal_statistics.Rd |only boostmath-1.1.0/boostmath/man/t_tests.Rd |only boostmath-1.1.0/boostmath/man/univariate_statistics.Rd |only boostmath-1.1.0/boostmath/man/z_tests.Rd |only boostmath-1.1.0/boostmath/src/Makevars | 26 boostmath-1.1.0/boostmath/src/boostmath/macros.hpp | 56 ++ boostmath-1.1.0/boostmath/src/boostmath/sexp.hpp |only boostmath-1.1.0/boostmath/src/constants.cpp |only boostmath-1.1.0/boostmath/src/cyl_hankel_1.cpp | 2 boostmath-1.1.0/boostmath/src/cyl_hankel_2.cpp | 2 boostmath-1.1.0/boostmath/src/init.cpp | 272 ++++++++++ boostmath-1.1.0/boostmath/src/interpolators |only boostmath-1.1.0/boostmath/src/interpolators.cpp |only boostmath-1.1.0/boostmath/src/quadrature_and_differentiation/fourier_integrals.cpp | 8 boostmath-1.1.0/boostmath/src/quadrature_and_differentiation/numerical_differentiation.cpp | 2 boostmath-1.1.0/boostmath/src/sph_hankel_1.cpp | 2 boostmath-1.1.0/boostmath/src/sph_hankel_2.cpp | 2 boostmath-1.1.0/boostmath/src/statistics |only boostmath-1.1.0/boostmath/src/statistics.cpp |only boostmath-1.1.0/boostmath/vignettes/constants.Rmd |only boostmath-1.1.0/boostmath/vignettes/interpolation.Rmd |only boostmath-1.1.0/boostmath/vignettes/quadrature-differentiation.Rmd | 4 boostmath-1.1.0/boostmath/vignettes/statistics.Rmd |only boostmath-1.1.0/boostmath/vignettes/vector-functionals.Rmd | 44 - 82 files changed, 635 insertions(+), 142 deletions(-)
Title: Bias Correction via Iterative Bootstrap
Description: An implementation of the iterative bootstrap procedure of
Kuk (1995) <doi:10.1111/j.2517-6161.1995.tb02035.x> to correct the estimation bias of a fitted model object. This
procedure has better bias correction properties than the
bootstrap bias correction technique.
Author: Samuel Orso [aut, cre],
Stephane Guerrier [ctb],
Yuming Zhang [ctb]
Maintainer: Samuel Orso <Samuel.Orso@unige.ch>
Diff between ib versions 0.2.0 dated 2022-04-04 and 0.2.1 dated 2025-09-04
DESCRIPTION | 11 - MD5 | 52 ++++---- NAMESPACE | 8 + NEWS.md | 5 R/AllClass.R | 243 +++++++++++++++++++++----------------- R/AllGeneric.R | 1 R/ib_betareg.R | 4 R/ib_glm.R | 8 - R/ib_glmer.R |only R/ib_lm.R | 4 R/ib_lmer.R | 4 R/ib_nls.R | 4 R/ib_vglm.R | 4 R/summary.R | 23 +++ build/partial.rdb |binary inst/examples/eg_glmer.R |only inst/examples/eg_lmer.R | 2 man/Ib-class.Rd | 50 +++---- man/SummaryIb-class.Rd | 42 ++---- man/ib.Rd | 27 +++- man/simulation-betareg-method.Rd | 4 man/simulation-glm-method.Rd | 4 man/simulation-glmerMod-method.Rd |only man/simulation-lm-method.Rd | 4 man/simulation-lmerMod-method.Rd | 4 man/simulation-negbin-method.Rd | 4 man/simulation-nls-method.Rd | 4 man/simulation-vglm-method.Rd | 4 man/summary-IbGlmer-method.Rd |only 29 files changed, 303 insertions(+), 217 deletions(-)
Title: Create Custom 'Bootstrap' Themes to Use in 'Shiny'
Description: Customize 'Bootstrap' and 'Bootswatch' themes, like colors, fonts, grid layout,
to use in 'Shiny' applications, 'rmarkdown' documents and 'flexdashboard'.
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
Thomas Park [ctb, cph] ,
Mark Otto [ctb] ,
Jacob Thornton [ctb] ,
Bootstrap contributors [ctb] ,
Twitter, Inc [cph] ,
onkbear [ctb, cph] ,
Colorlib [ctb, cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between fresh versions 0.2.1 dated 2024-06-26 and 0.2.2 dated 2025-09-04
fresh-0.2.1/fresh/build/fresh.pdf |only fresh-0.2.2/fresh/DESCRIPTION | 8 fresh-0.2.2/fresh/MD5 | 45 fresh-0.2.2/fresh/NEWS.md | 45 fresh-0.2.2/fresh/R/bs_theme_nord.R | 118 fresh-0.2.2/fresh/R/fresh-package.R | 14 fresh-0.2.2/fresh/R/utils.R | 110 fresh-0.2.2/fresh/R/vars-bootstrap.R | 1402 ++++---- fresh-0.2.2/fresh/build/stage23.rdb |binary fresh-0.2.2/fresh/build/vignette.rds |binary fresh-0.2.2/fresh/inst/assets/AdminLTE-3.1.0/_info-box.scss | 306 - fresh-0.2.2/fresh/inst/assets/AdminLTE-3.1.0/_variables.scss | 474 +- fresh-0.2.2/fresh/inst/doc/fresh.R | 116 fresh-0.2.2/fresh/inst/doc/fresh.Rmd | 308 - fresh-0.2.2/fresh/inst/doc/fresh.html | 956 ++--- fresh-0.2.2/fresh/inst/doc/vars-bs4dash.R | 144 fresh-0.2.2/fresh/inst/doc/vars-bs4dash.html | 952 ++--- fresh-0.2.2/fresh/inst/doc/vars-shiny.R | 524 +-- fresh-0.2.2/fresh/inst/doc/vars-shiny.html | 1766 +++++------ fresh-0.2.2/fresh/inst/doc/vars-shinydashboard.R | 194 - fresh-0.2.2/fresh/inst/doc/vars-shinydashboard.html | 976 +++--- fresh-0.2.2/fresh/inst/examples/bs4Dash/app.R | 458 +- fresh-0.2.2/fresh/inst/examples/bs4Dash/dark-mode.R | 526 +-- fresh-0.2.2/fresh/vignettes/fresh.Rmd | 308 - 24 files changed, 4877 insertions(+), 4873 deletions(-)
Title: UNHCR 'ggplot2' Theme and Colour Palettes
Description: A 'ggplot2' theme and color palettes following
the United Nations High Commissioner for Refugees (UNHCR) Data Visualization Guidelines recommendations.
Author: Cedric Vidonne [aut, cre],
Ahmadou Dicko [aut],
UNHCR [cph]
Maintainer: Cedric Vidonne <cedric@vidonne.me>
Diff between unhcrthemes versions 0.7.0 dated 2025-06-27 and 0.7.1 dated 2025-09-04
unhcrthemes-0.7.0/unhcrthemes/man/lato_registered.Rd |only unhcrthemes-0.7.1/unhcrthemes/DESCRIPTION | 9 ++-- unhcrthemes-0.7.1/unhcrthemes/MD5 | 9 ++-- unhcrthemes-0.7.1/unhcrthemes/NAMESPACE | 3 - unhcrthemes-0.7.1/unhcrthemes/NEWS.md | 13 ++++++ unhcrthemes-0.7.1/unhcrthemes/R/lato.R | 37 +------------------ 6 files changed, 23 insertions(+), 48 deletions(-)
Title: Freshing Up your 'ggplot2' Plots
Description: Functions for working with legends and axis lines of 'ggplot2',
facets that repeat axis lines on all panels, and some 'knitr' extensions.
Author: Stefan McKinnon Edwards [aut, ctb, cre] ,
Baptiste Auguie [ctb] ,
Shaun Jackman [ctb] ,
Hadley Wickham [ctb] ,
Winston Chang [ctb]
Maintainer: Stefan McKinnon Edwards <sme@iysik.com>
Diff between lemon versions 0.5.1 dated 2025-07-22 and 0.5.2 dated 2025-09-04
DESCRIPTION | 6 MD5 | 44 +++---- R/axis-annotation.r | 4 R/legends.r | 15 +- R/lemon-plot.r | 2 inst/doc/capped-axes.html | 30 ++-- inst/doc/facet-rep-labels.R | 10 - inst/doc/facet-rep-labels.html | 12 - inst/doc/geoms.html | 8 - inst/doc/gtable_show_lemonade.R | 2 inst/doc/gtable_show_lemonade.html | 20 +-- inst/doc/legends.R | 3 inst/doc/legends.Rmd | 6 inst/doc/legends.html | 220 +++++++++++++++++------------------ inst/doc/lemon_print.html | 4 man/lemon-ggproto.Rd | 4 man/lemon_plot.Rd | 2 man/reposition_legend.Rd | 5 tests/testthat/test_facet.R | 32 +++-- tests/testthat/test_facet_aux.R | 10 + tests/testthat/test_geom-pointline.r | 65 +++++++--- tests/testthat/test_lemon_plot.r | 7 - vignettes/legends.Rmd | 6 23 files changed, 284 insertions(+), 233 deletions(-)
Title: R Toolkit for 'Databricks'
Description: Collection of utilities that improve using 'Databricks' from R.
Primarily functions that wrap specific 'Databricks' APIs
(<https://docs.databricks.com/api>), 'RStudio' connection pane support, quality
of life functions to make 'Databricks' simpler to use.
Author: Zac Davies [aut, cre],
Rafi Kurlansik [aut],
Databricks [cph, fnd]
Maintainer: Zac Davies <zac@databricks.com>
Diff between brickster versions 0.2.8.1 dated 2025-07-20 and 0.2.9 dated 2025-09-04
brickster-0.2.8.1/brickster/R/dbi-backend.R |only brickster-0.2.9/brickster/DESCRIPTION | 11 brickster-0.2.9/brickster/MD5 | 176 ++-- brickster-0.2.9/brickster/NAMESPACE | 69 + brickster-0.2.9/brickster/NEWS.md | 70 - brickster-0.2.9/brickster/R/clusters.R | 16 brickster-0.2.9/brickster/R/data-structures.R | 8 brickster-0.2.9/brickster/R/databricks-dbi.R |only brickster-0.2.9/brickster/R/databricks-dbplyr.R |only brickster-0.2.9/brickster/R/execution-context.R | 16 brickster-0.2.9/brickster/R/jobs.R | 149 ++- brickster-0.2.9/brickster/R/remote-repl.R | 17 brickster-0.2.9/brickster/R/sql-query-execution.R | 348 ++++++- brickster-0.2.9/brickster/R/volume-fs.R | 313 +++++-- brickster-0.2.9/brickster/README.md | 103 ++ brickster-0.2.9/brickster/build/vignette.rds |binary brickster-0.2.9/brickster/inst/doc/cluster-management.R | 138 +-- brickster-0.2.9/brickster/inst/doc/cluster-management.html | 5 brickster-0.2.9/brickster/inst/doc/managing-jobs.R | 440 +++++----- brickster-0.2.9/brickster/inst/doc/managing-jobs.html | 5 brickster-0.2.9/brickster/inst/doc/remote-repl.R | 4 brickster-0.2.9/brickster/inst/doc/remote-repl.html | 5 brickster-0.2.9/brickster/inst/doc/setup-auth.R | 58 - brickster-0.2.9/brickster/inst/doc/setup-auth.html | 5 brickster-0.2.9/brickster/inst/doc/sql-backend.R |only brickster-0.2.9/brickster/inst/doc/sql-backend.Rmd |only brickster-0.2.9/brickster/inst/doc/sql-backend.html |only brickster-0.2.9/brickster/man/DatabricksConnection-class.Rd |only brickster-0.2.9/brickster/man/DatabricksDriver-class.Rd |only brickster-0.2.9/brickster/man/DatabricksResult-class.Rd |only brickster-0.2.9/brickster/man/DatabricksSQL.Rd |only brickster-0.2.9/brickster/man/copy_to.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/databricks-dbi.Rd |only brickster-0.2.9/brickster/man/databricks-dbplyr.Rd |only brickster-0.2.9/brickster/man/dbAppendTable-DatabricksConnection-Id-data.frame-method.Rd |only brickster-0.2.9/brickster/man/dbAppendTable-DatabricksConnection-character-data.frame-method.Rd |only brickster-0.2.9/brickster/man/dbBegin-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbClearResult-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbColumnInfo-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbCommit-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbConnect-DatabricksDriver-method.Rd |only brickster-0.2.9/brickster/man/dbDataType-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbDisconnect-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbExecute-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbExistsTable-DatabricksConnection-AsIs-method.Rd |only brickster-0.2.9/brickster/man/dbExistsTable-DatabricksConnection-Id-method.Rd |only brickster-0.2.9/brickster/man/dbExistsTable-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbFetch-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbGetInfo-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbGetQuery-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbGetRowCount-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbGetRowsAffected-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbGetStatement-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbHasCompleted-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/dbIsValid-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbListFields-DatabricksConnection-AsIs-method.Rd |only brickster-0.2.9/brickster/man/dbListFields-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbListTables-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbQuoteIdentifier-DatabricksConnection-Id-method.Rd |only brickster-0.2.9/brickster/man/dbQuoteIdentifier-DatabricksConnection-SQL-method.Rd |only brickster-0.2.9/brickster/man/dbQuoteIdentifier-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbRollback-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/dbSendQuery-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbSendStatement-DatabricksConnection-character-method.Rd |only brickster-0.2.9/brickster/man/dbWriteTable-DatabricksConnection-AsIs-data.frame-method.Rd |only brickster-0.2.9/brickster/man/dbWriteTable-DatabricksConnection-Id-data.frame-method.Rd |only brickster-0.2.9/brickster/man/dbWriteTable-DatabricksConnection-character-data.frame-method.Rd |only brickster-0.2.9/brickster/man/db_append_with_select_values.Rd |only brickster-0.2.9/brickster/man/db_collect.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/db_create_table_as_select_values.Rd |only brickster-0.2.9/brickster/man/db_create_table_from_data.Rd |only brickster-0.2.9/brickster/man/db_generate_typed_values_sql.Rd |only brickster-0.2.9/brickster/man/db_generate_typed_values_sql_for_view.Rd |only brickster-0.2.9/brickster/man/db_generate_values_sql.Rd |only brickster-0.2.9/brickster/man/db_jobs_create.Rd | 5 brickster-0.2.9/brickster/man/db_jobs_delete.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_get.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_list.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_repair_run.Rd |only brickster-0.2.9/brickster/man/db_jobs_reset.Rd | 5 brickster-0.2.9/brickster/man/db_jobs_run_now.Rd | 23 brickster-0.2.9/brickster/man/db_jobs_runs_cancel.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_delete.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_export.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_get.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_get_output.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_list.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_runs_submit.Rd | 1 brickster-0.2.9/brickster/man/db_jobs_update.Rd | 1 brickster-0.2.9/brickster/man/db_should_use_volume_method.Rd |only brickster-0.2.9/brickster/man/db_sql_create_empty_result.Rd |only brickster-0.2.9/brickster/man/db_sql_exec_and_wait.Rd |only brickster-0.2.9/brickster/man/db_sql_exec_poll_for_success.Rd | 14 brickster-0.2.9/brickster/man/db_sql_exec_query.Rd | 2 brickster-0.2.9/brickster/man/db_sql_fetch_results.Rd |only brickster-0.2.9/brickster/man/db_sql_process_inline.Rd |only brickster-0.2.9/brickster/man/db_sql_query.Rd | 8 brickster-0.2.9/brickster/man/db_sql_type_to_empty_vector.Rd |only brickster-0.2.9/brickster/man/db_volume_delete.Rd | 1 brickster-0.2.9/brickster/man/db_volume_dir_create.Rd | 1 brickster-0.2.9/brickster/man/db_volume_dir_delete.Rd | 7 brickster-0.2.9/brickster/man/db_volume_dir_exists.Rd | 1 brickster-0.2.9/brickster/man/db_volume_file_exists.Rd | 1 brickster-0.2.9/brickster/man/db_volume_list.Rd | 1 brickster-0.2.9/brickster/man/db_volume_read.Rd | 6 brickster-0.2.9/brickster/man/db_volume_recursive_delete_contents.Rd |only brickster-0.2.9/brickster/man/db_volume_upload_dir.Rd |only brickster-0.2.9/brickster/man/db_volume_write.Rd | 8 brickster-0.2.9/brickster/man/db_write_table_standard.Rd |only brickster-0.2.9/brickster/man/db_write_table_volume.Rd |only brickster-0.2.9/brickster/man/dbplyr_edition.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/generate_temp_name.Rd |only brickster-0.2.9/brickster/man/show-DatabricksConnection-method.Rd |only brickster-0.2.9/brickster/man/show-DatabricksDriver-method.Rd |only brickster-0.2.9/brickster/man/show-DatabricksResult-method.Rd |only brickster-0.2.9/brickster/man/sql_query_fields.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/sql_query_save.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/sql_table_analyze.DatabricksConnection.Rd |only brickster-0.2.9/brickster/man/sql_translation.DatabricksConnection.Rd |only brickster-0.2.9/brickster/tests/testthat/helper-skip.R | 48 + brickster-0.2.9/brickster/tests/testthat/test-databricks-dbi.R |only brickster-0.2.9/brickster/tests/testthat/test-databricks-dbplyr.R |only brickster-0.2.9/brickster/tests/testthat/test-jobs.R | 62 + brickster-0.2.9/brickster/tests/testthat/test-request-helpers.R | 7 brickster-0.2.9/brickster/tests/testthat/test-sql-execution.R | 72 + brickster-0.2.9/brickster/tests/testthat/test-volumes-fs.R | 46 + brickster-0.2.9/brickster/vignettes/sql-backend.Rmd |only 127 files changed, 1646 insertions(+), 639 deletions(-)
Title: Seamless Access to World Bank International Debt Statistics
(IDS)
Description: Access and analyze the World Bank's International Debt Statistics
(IDS) <https://www.worldbank.org/en/programs/debt-statistics/ids>.
IDS provides creditor-debtor relationships between countries, regions, and
institutions. 'wbids' enables users to download, process and work with IDS
series across multiple geographies, counterparts, and time periods.
Author: Teal Emery [aut, cre],
Teal Insights [cph],
Christoph Scheuch [aut] ,
Christopher Smith [ctb]
Maintainer: Teal Emery <lte@tealinsights.com>
Diff between wbids versions 1.0.0 dated 2025-02-08 and 1.1.0 dated 2025-09-04
wbids-1.0.0/wbids/R/ids_list_geographies.R |only wbids-1.0.0/wbids/man/geographies.Rd |only wbids-1.0.0/wbids/tests/testthat/test-ids_list_geographies.R |only wbids-1.1.0/wbids/DESCRIPTION | 17 wbids-1.1.0/wbids/MD5 | 61 +-- wbids-1.1.0/wbids/NAMESPACE | 2 wbids-1.1.0/wbids/NEWS.md | 4 wbids-1.1.0/wbids/R/global-variables.R | 6 wbids-1.1.0/wbids/R/ids_bulk.R | 59 +-- wbids-1.1.0/wbids/R/ids_bulk_files.R | 15 wbids-1.1.0/wbids/R/ids_bulk_series.R | 2 wbids-1.1.0/wbids/R/ids_get.R | 125 ++++-- wbids-1.1.0/wbids/R/ids_list_entities.R |only wbids-1.1.0/wbids/R/read_bulk_info.R | 3 wbids-1.1.0/wbids/R/sysdata.R | 6 wbids-1.1.0/wbids/R/sysdata.rda |binary wbids-1.1.0/wbids/R/wbids-package.R | 1 wbids-1.1.0/wbids/README.md | 68 +++ wbids-1.1.0/wbids/build/vignette.rds |binary wbids-1.1.0/wbids/data/sysdata.rda |binary wbids-1.1.0/wbids/inst/doc/data-model.R | 14 wbids-1.1.0/wbids/inst/doc/data-model.html | 52 +- wbids-1.1.0/wbids/inst/doc/data-model.qmd | 40 +- wbids-1.1.0/wbids/man/entities.Rd |only wbids-1.1.0/wbids/man/ids_bulk.Rd | 4 wbids-1.1.0/wbids/man/ids_get.Rd | 27 - wbids-1.1.0/wbids/man/ids_list_entities.Rd |only wbids-1.1.0/wbids/man/ids_list_geographies.Rd | 31 - wbids-1.1.0/wbids/man/series.Rd | 2 wbids-1.1.0/wbids/man/series_topics.Rd | 2 wbids-1.1.0/wbids/man/wbids-package.Rd | 2 wbids-1.1.0/wbids/tests/testthat/test-ids_bulk.R | 81 +++- wbids-1.1.0/wbids/tests/testthat/test-ids_get.R | 201 ++++++----- wbids-1.1.0/wbids/tests/testthat/test-ids_list_entities.R |only wbids-1.1.0/wbids/vignettes/data-model.qmd | 40 +- 35 files changed, 534 insertions(+), 331 deletions(-)
Title: Network Visualization using 'vis.js' Library
Description: Provides an R interface to the 'vis.js' JavaScript charting
library. It allows an interactive visualization of networks.
Author: Almende B.V. and Contributors [aut, cph] ,
Benoit Thieurmel [aut, cre]
Maintainer: Benoit Thieurmel <bthieurmel@gmail.com>
Diff between visNetwork versions 2.1.2 dated 2022-09-29 and 2.1.4 dated 2025-09-04
DESCRIPTION | 9 MD5 | 214 +++++++------- NEWS | 8 R/dependencies.R | 8 R/visCollapse.R | 10 R/visConfigure.R | 4 R/visDocumentation.R | 8 R/visEdges.R | 83 ++--- R/visExport.R | 6 R/visFit.R | 12 R/visFocus.R | 12 R/visGetUtils.R | 124 ++++---- R/visGroups.R | 12 R/visHclust.R | 7 R/visHierarchicalLayout.R | 10 R/visIgraph.R | 16 - R/visIgraphLayout.R | 8 R/visInteraction.R | 23 - R/visLayout.R | 12 R/visLegend.R | 12 R/visMoveNode.R | 12 R/visNearestNodes.R | 14 R/visNetwork.R | 54 +-- R/visNetworkEditor.R | 16 - R/visNetworkEvents.R | 24 - R/visNetworkProxy.R | 40 +- R/visNodes.R | 114 +++---- R/visOptions.R | 74 ++-- R/visPhysics.R | 74 ++-- R/visRedraw.R | 12 R/visRemoveEdges.R | 10 R/visRemoveNodes.R | 10 R/visSave.R | 6 R/visSelectEdges.R | 10 R/visSelectNodes.R | 10 R/visSetData.R | 16 - R/visSetOptions.R | 2 R/visSetSelection.R | 10 R/visSetTitle.R | 28 - R/visStabilize.R | 38 +- R/visTree.R | 39 +- R/visTreeModule.R | 2 R/visUnselectAll.R | 12 R/visUpdateEdges.R | 26 - R/visUpdateNodes.R | 24 - build/vignette.rds |binary inst/doc/Introduction-to-visNetwork.R | 60 ++-- inst/doc/Introduction-to-visNetwork.html | 459 +++++++++++++++---------------- inst/shiny/src/server/options_server.R | 2 man/addExport.Rd | 4 man/addFontAwesome.Rd | 2 man/addIonicons.Rd | 2 man/visConfigure.Rd | 4 man/visDocumentation.Rd | 8 man/visEdges.Rd | 83 ++--- man/visEvents.Rd | 22 - man/visExport.Rd | 4 man/visFit.Rd | 12 man/visFocus.Rd | 12 man/visGetBoundingBox.Rd | 10 man/visGetConnectedEdges.Rd | 10 man/visGetConnectedNodes.Rd | 10 man/visGetEdges.Rd | 10 man/visGetNodes.Rd | 10 man/visGetPositions.Rd | 12 man/visGetScale.Rd | 10 man/visGetSelectedEdges.Rd | 10 man/visGetSelectedNodes.Rd | 10 man/visGetSelection.Rd | 10 man/visGetViewPosition.Rd | 10 man/visGroups.Rd | 12 man/visHclust.Rd | 18 - man/visHierarchicalLayout.Rd | 10 man/visIgraphLayout.Rd | 8 man/visInteraction.Rd | 23 - man/visLayout.Rd | 12 man/visLegend.Rd | 12 man/visMoveNode.Rd | 12 man/visNearestNodes.Rd | 10 man/visNetwork-collapse.Rd | 10 man/visNetwork-igraph.Rd | 14 man/visNetwork-shiny.Rd | 40 +- man/visNetwork-treeModule.Rd | 30 +- man/visNetwork.Rd | 52 +-- man/visNetworkEditor-module.Rd | 12 man/visNetworkEditor.Rd | 6 man/visNodes.Rd | 114 +++---- man/visOptions.Rd | 72 ++-- man/visPhysics.Rd | 74 ++-- man/visRedraw.Rd | 12 man/visRemoveEdges.Rd | 10 man/visRemoveNodes.Rd | 10 man/visSave.Rd | 4 man/visSelectEdges.Rd | 10 man/visSelectNodes.Rd | 10 man/visSetData.Rd | 16 - man/visSetOptions.Rd | 2 man/visSetSelection.Rd | 10 man/visSetTitle.Rd | 28 - man/visStabilize.Rd | 12 man/visStartSimulation.Rd | 12 man/visStopSimulation.Rd | 12 man/visStorePositions.Rd | 10 man/visTree.Rd | 38 +- man/visTreeEditor.Rd | 4 man/visUnselectAll.Rd | 12 man/visUpdateEdges.Rd | 26 - man/visUpdateNodes.Rd | 24 - 108 files changed, 1437 insertions(+), 1427 deletions(-)
Title: Spatial Regression Analysis
Description: A collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in 'spdep'. These model fitting functions include maximum likelihood methods for cross-sectional models proposed by 'Cliff' and 'Ord' (1973, ISBN:0850860369) and (1981, ISBN:0850860814), fitting methods initially described by 'Ord' (1975) <doi:10.1080/01621459.1975.10480272>. The models are further described by 'Anselin' (1988) <doi:10.1007/978-94-015-7799-1>. Spatial two stage least squares and spatial general method of moment models initially proposed by 'Kelejian' and 'Prucha' (1998) <doi:10.1023/A:1007707430416> and (1999) <doi:10.1111/1468-2354.00027> are provided. Impact methods and MCMC fitting methods proposed by 'LeSage' and 'Pace' (2009) <doi:10.1201/9781420064254> are implemented for the family of cross-sectional spatial regression models. Methods for fitting the log determinant term in maximu [...truncated...]
Author: Roger Bivand [cre, aut] ,
Gianfranco Piras [aut],
Luc Anselin [ctb],
Andrew Bernat [ctb],
Eric Blankmeyer [ctb],
Yongwan Chun [ctb],
Virgilio Gomez-Rubio [ctb],
Daniel Griffith [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
James LeSage [ctb],
Ange [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spatialreg versions 1.3-6 dated 2024-12-02 and 1.4-1 dated 2025-09-04
DESCRIPTION | 19 +-- MD5 | 59 +++++---- NAMESPACE | 3 NEWS.md | 14 ++ R/ML_models.R | 198 +++++++++------------------------ R/SLX_WX.R | 188 +++++++++++++++++++++---------- R/impacts.R | 10 + R/kpgm_new.R | 6 + R/s2sls.R | 4 R/sarlm_tests.R | 14 ++ R/spBreg.R | 222 ++++++++++++------------------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/SpatialFiltering.html | 2 inst/doc/nb_igraph.html | 8 - inst/doc/sids_models.R | 4 inst/doc/sids_models.Rmd | 4 inst/doc/sids_models.html | 9 - inst/tinytest/test_Durbin_factor.R |only inst/tinytest/test_TR_20_07_20.R | 102 ++++++++--------- man/ML_models.Rd | 4 man/SET_MCMC.Rd | 5 man/SLX.Rd | 8 + man/impacts.Rd | 34 +++-- man/sarlm_tests.Rd | 2 src/eminmaxC.c | 28 ++-- src/listw2Matrix.c | 4 src/ml_sse.c | 90 +++++++-------- src/mom_calc.c | 10 - src/spatialreg.h | 5 vignettes/sids_models.Rmd | 4 31 files changed, 517 insertions(+), 543 deletions(-)
Title: Legacy 'Ryacas' (Interface to 'Yacas' Computer Algebra System)
Description: A legacy version of 'Ryacas', an interface to the 'yacas' computer algebra system (<http://www.yacas.org/>).
Author: Mikkel Meyer Andersen [aut, cre, cph],
Rob Goedman [aut, cph],
Gabor Grothendieck [aut, cph],
Soeren Hoejsgaard [aut, cph],
Grzegorz Mazur [aut, cph],
Ayal Pinkus [aut, cph],
Nemanja Trifunovic [cph] )
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between Ryacas0 versions 0.4.4 dated 2023-01-12 and 0.4.5 dated 2025-09-04
DESCRIPTION | 9 MD5 | 40 +-- R/Sym2.R | 6 R/ryacas-package.R | 3 README.md | 4 build/vignette.rds |binary demo/Ryacas-gui.R | 2 inst/NEWS | 4 inst/doc/elaborate-reference.R | 2 inst/doc/elaborate-reference.html | 438 ++++++++++++++++++------------------ inst/doc/getting-started.R | 2 inst/doc/getting-started.html | 58 ++-- inst/doc/latent-variable-model.R | 6 inst/doc/latent-variable-model.html | 68 ++--- inst/doc/ssm-matrix.R | 6 inst/doc/ssm-matrix.html | 120 ++++----- inst/doc/sym-matrix-vector.R | 4 inst/doc/sym-matrix-vector.html | 72 ++--- man/Ryacas0-package.Rd | 28 ++ src/Makevars | 3 tests/testthat/test-simple.R | 48 +-- 21 files changed, 477 insertions(+), 446 deletions(-)
Title: Basic Robust Statistics
Description: "Essential" Robust Statistics.
Tools allowing to analyze data with robust methods. This includes
regression methodology including model selections and multivariate
statistics where we strive to cover the book "Robust Statistics,
Theory and Methods" by 'Maronna, Martin and Yohai'; Wiley 2006.
Author: Martin Maechler [aut, cre] ,
Peter Rousseeuw [ctb] ,
Christophe Croux [ctb] ,
Valentin Todorov [aut] ,
Andreas Ruckstuhl [aut] ,
Matias Salibian-Barrera [aut] ,
Tobias Verbeke [ctb, fnd] ,
Manuel Koller [aut] ,
Eduardo L. T. Conceicao [aut] ,
Maria A [...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustbase versions 0.99-4-1 dated 2024-09-27 and 0.99-6 dated 2025-09-04
DESCRIPTION | 15 ++++++++------- MD5 | 28 ++++++++++++++-------------- R/covMcd.R | 4 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 19 +++++++++++++++++++ inst/doc/fastMcd-kmini.pdf |binary inst/doc/lmrob_simulation.R | 28 ++++++++++++++++++++++++---- inst/doc/lmrob_simulation.Rnw | 35 ++++++++++++++++++++++++++++++++--- inst/doc/lmrob_simulation.pdf |binary inst/doc/psi_functions.pdf |binary inst/xtraR/platform-sessionInfo.R | 5 +++-- tests/mc-strict.R | 2 +- tests/poisson-ex.R | 3 +-- vignettes/lmrob_simulation.Rnw | 35 ++++++++++++++++++++++++++++++++--- 15 files changed, 136 insertions(+), 38 deletions(-)
Title: Enterprise Streamlined 'shiny' Application Framework Using
'bs4Dash'
Description: A framework for building enterprise, scalable and UI-standardized 'shiny' applications.
It brings enhanced features such as 'bootstrap' v4 <https://getbootstrap.com/docs/4.0/getting-started/introduction/>,
additional and enhanced 'shiny' modules, customizable UI features, as well as an enhanced application file
organization paradigm. This update allows developers to harness the ability to build powerful applications and
enriches the 'shiny' developers' experience when building and maintaining applications.
Author: Mohammed Ali [aut, cre],
Constance Brett [ctb],
Aggregate Genius Inc [spn]
Maintainer: Mohammed Ali <mohammed@aggregate-genius.com>
Diff between periscope2 versions 0.2.4 dated 2025-04-14 and 0.3.0 dated 2025-09-04
DESCRIPTION | 14 MD5 | 201 +++++----- NAMESPACE | 2 NEWS.md | 13 R/downloadFile.R | 102 +++-- R/downloadablePlot.R | 26 - R/downloadableReactTable.R |only R/downloadableTable.R | 27 - R/logViewer.R | 33 + R/logger.R | 29 + R/ui_helpers.R | 2 README.md | 3 build/vignette.rds |binary inst/WORDLIST | 12 inst/doc/announcement-module.Rmd | 1 inst/doc/announcement-module.html | 6 inst/doc/announcement_addin.Rmd | 1 inst/doc/announcement_addin.html | 6 inst/doc/applicationReset-module.Rmd | 1 inst/doc/applicationReset-module.html | 6 inst/doc/downloadFile-module.Rmd | 4 inst/doc/downloadFile-module.html | 11 inst/doc/downloadablePlot-module.Rmd | 1 inst/doc/downloadablePlot-module.html | 6 inst/doc/downloadableReactTable-module.R |only inst/doc/downloadableReactTable-module.Rmd |only inst/doc/downloadableReactTable-module.html |only inst/doc/downloadableTable-module.Rmd | 1 inst/doc/downloadableTable-module.html | 6 inst/doc/logViewer-module.Rmd | 6 inst/doc/logViewer-module.html | 15 inst/doc/new-application.Rmd | 1 inst/doc/new-application.html | 6 inst/doc/themeBuilder_addin.Rmd | 1 inst/doc/themeBuilder_addin.html | 6 inst/fw_templ/p_example/custom.css | 33 + inst/fw_templ/p_example/custom.js | 25 + inst/fw_templ/p_example/global.R | 1 inst/fw_templ/p_example/plots.R | 6 inst/fw_templ/p_example/program_helpers.R | 1 inst/fw_templ/p_example/server_local.R | 37 + inst/fw_templ/p_example/ui_body.R | 50 ++ inst/fw_templ/p_example/ui_body_no_left_sidebar.R | 51 ++ inst/fw_templ/www/custom.css | 27 + inst/fw_templ/www/custom.js | 25 + man/downloadFile.Rd | 8 man/downloadFileButton.Rd | 2 man/downloadablePlot.Rd | 6 man/downloadablePlotUI.Rd | 6 man/downloadableReactTable.Rd |only man/downloadableReactTableUI.Rd |only man/logViewerOutput.Rd | 7 man/set_app_parameters.Rd | 2 tests/testthat/_snaps/download_file/download.csv |only tests/testthat/_snaps/download_file/download.tsv |only tests/testthat/_snaps/download_file/mydownload1.txt | 12 tests/testthat/_snaps/download_file/show_row_names_download.tsv |only tests/testthat/_snaps/download_file/show_row_names_download.txt |only tests/testthat/_snaps/log_viewer.md | 25 + tests/testthat/sample_app_both_sidebars/program/fxn/plots.R | 6 tests/testthat/sample_app_both_sidebars/program/fxn/program_helpers.R | 5 tests/testthat/sample_app_both_sidebars/program/global.R | 1 tests/testthat/sample_app_both_sidebars/program/server_local.R | 37 + tests/testthat/sample_app_both_sidebars/program/ui_body.R | 50 ++ tests/testthat/sample_app_both_sidebars/www/css/custom.css | 27 + tests/testthat/sample_app_both_sidebars/www/js/custom.js | 25 + tests/testthat/sample_app_left_sidebar/program/fxn/plots.R | 6 tests/testthat/sample_app_left_sidebar/program/fxn/program_helpers.R | 5 tests/testthat/sample_app_left_sidebar/program/global.R | 1 tests/testthat/sample_app_left_sidebar/program/server_local.R | 37 + tests/testthat/sample_app_left_sidebar/program/ui_body.R | 50 ++ tests/testthat/sample_app_left_sidebar/www/css/custom.css | 27 + tests/testthat/sample_app_left_sidebar/www/js/custom.js | 25 + tests/testthat/sample_app_no_both_sidebars/log/actions.log | 3 tests/testthat/sample_app_no_both_sidebars/log/actions.log.last | 3 tests/testthat/sample_app_no_both_sidebars/program/fxn/plots.R | 6 tests/testthat/sample_app_no_both_sidebars/program/fxn/program_helpers.R | 5 tests/testthat/sample_app_no_both_sidebars/program/global.R | 1 tests/testthat/sample_app_no_both_sidebars/program/server_local.R | 37 + tests/testthat/sample_app_no_both_sidebars/program/ui_body.R | 51 ++ tests/testthat/sample_app_no_both_sidebars/www/css/custom.css | 27 + tests/testthat/sample_app_no_both_sidebars/www/js/custom.js | 25 + tests/testthat/sample_app_right_sidebar/program/fxn/plots.R | 6 tests/testthat/sample_app_right_sidebar/program/fxn/program_helpers.R | 5 tests/testthat/sample_app_right_sidebar/program/global.R | 1 tests/testthat/sample_app_right_sidebar/program/server_local.R | 37 + tests/testthat/sample_app_right_sidebar/program/ui_body.R | 51 ++ tests/testthat/sample_app_right_sidebar/www/css/custom.css | 26 + tests/testthat/sample_app_right_sidebar/www/js/custom.js | 25 + tests/testthat/setup.R | 22 + tests/testthat/test_download_file.R | 184 +++++++-- tests/testthat/test_downloadable_plot.R | 8 tests/testthat/test_downloadable_react_table.R |only tests/testthat/test_downloadable_table.R | 86 ++-- tests/testthat/test_log_viewer.R | 21 - tests/testthat/test_logger.R | 125 +++++- tests/testthat/test_ui_functions.R | 94 ++-- vignettes/announcement-module.Rmd | 1 vignettes/announcement_addin.Rmd | 1 vignettes/applicationReset-module.Rmd | 1 vignettes/downloadFile-module.Rmd | 4 vignettes/downloadablePlot-module.Rmd | 1 vignettes/downloadableReactTable-module.Rmd |only vignettes/downloadableTable-module.Rmd | 1 vignettes/figures/downloadableReactTable-1.png |only vignettes/logViewer-module.Rmd | 6 vignettes/new-application.Rmd | 1 vignettes/themeBuilder_addin.Rmd | 1 108 files changed, 1638 insertions(+), 403 deletions(-)
Title: Interactive Parallel Categories Diagrams for 'easyalluvial'
Description: Complex graphical representations of data are best explored using interactive elements.
'parcats' adds interactive graphing capabilities to the 'easyalluvial' package.
The 'plotly.js' parallel categories diagrams offer a good framework for
creating interactive flow graphs that allow manual drag and drop sorting of dimensions
and categories, highlighting single flows and displaying mouse over information. The
'plotly.js' dependency is quite heavy and therefore is outsourced into a separate package.
Author: Bjoern Koneswarakantha [aut, cre]
Maintainer: Bjoern Koneswarakantha <datistics@gmail.com>
Diff between parcats versions 0.0.5 dated 2023-12-10 and 0.1.0 dated 2025-09-04
DESCRIPTION | 14 ++++++------ MD5 | 10 ++++----- NEWS.md | 3 ++ R/parcats.R | 46 +++++++++++++++++++++--------------------- inst/WORDLIST | 2 - tests/testthat/test_parcats.R | 7 +++++- 6 files changed, 45 insertions(+), 37 deletions(-)
Title: Multivariate Difference Between Two Groups
Description: Estimation of multivariate differences between two groups (e.g., multivariate sex differences) with regularized regression methods and predictive approach. See Ilmarinen et al. (2023) <doi:10.1177/08902070221088155>. Deconstructing difference score correlations (e.g., gender-equality paradox), see Ilmarinen & Lönnqvist (2024) <doi:10.1037/pspp0000508>.
Includes also tools that help in understanding difference score reliability, conditional intra-class correlations, tail-dependency, and heterogeneity of variance estimates. Package development was supported by the Academy of Finland research grant 338891.
Author: Ville-Juhani Ilmarinen [aut, cre]
Maintainer: Ville-Juhani Ilmarinen <vj.ilmarinen@gmail.com>
Diff between multid versions 1.0.0 dated 2024-02-15 and 1.0.1 dated 2025-09-04
DESCRIPTION | 18 ++-- MD5 | 40 ++++----- NEWS.md | 10 ++ R/D_regularized.R | 2 R/D_regularized_fold_out.R | 6 - R/D_regularized_out.R | 2 R/ddsc_ml.R | 22 ++++- R/deprecated_functions.R |only R/plot_ddsc.R | 58 ++++++++++--- R/qcc.R | 17 +++- README.md | 22 ++++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/doc/multivariate_sex_differences_in_personality.R | 6 - inst/doc/multivariate_sex_differences_in_personality.html | 59 ++++++-------- man/D_regularized.Rd | 2 man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-4-2.png |binary man/multid-deprecated.Rd |only man/plot_ddsc.Rd | 14 +++ man/qcc.Rd | 3 22 files changed, 195 insertions(+), 90 deletions(-)
Title: Ensemble Algorithms for Time Series Forecasting with Modeltime
Description: A 'modeltime' extension that implements time series ensemble forecasting methods including model averaging,
weighted averaging, and stacking. These techniques are popular methods
to improve forecast accuracy and stability.
Author: Matt Dancho [aut, cre],
Business Science [cph]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between modeltime.ensemble versions 1.0.5 dated 2025-08-28 and 1.1.0 dated 2025-09-04
DESCRIPTION | 10 MD5 | 8 NEWS.md | 6 R/ensemble_model_spec.R | 76 ++----- inst/doc/nested-ensembles.html | 444 ++++++++++++++++++++--------------------- 5 files changed, 267 insertions(+), 277 deletions(-)
More information about modeltime.ensemble at CRAN
Permanent link
Title: Performance Measures for 'mlr3'
Description: Implements multiple performance measures for supervised
learning. Includes over 40 measures for regression and
classification. Additionally, meta information about the performance
measures can be queried, e.g. what the best and worst possible
performances scores are.
Author: Michel Lang [aut] ,
Martin Binder [ctb],
Marc Becker [cre, aut] ,
Lona Koers [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3measures versions 1.0.0 dated 2024-09-11 and 1.1.0 dated 2025-09-04
DESCRIPTION | 16 ++++++------- MD5 | 50 +++++++++++++++++++++--------------------- NAMESPACE | 2 + NEWS.md | 6 +++++ R/classif_acc.R | 6 ++--- R/helper.R | 8 ++++++ R/measures.R | 20 ++++++++++++++++ R/regr_bias.R | 6 ++--- R/regr_pbias.R | 6 ++--- R/regr_rae.R | 1 R/regr_rrse.R | 2 + R/regr_rse.R | 2 + R/regr_rsq.R | 1 R/regr_sae.R | 15 +++++++++--- R/regr_sse.R | 15 +++++++++--- build/partial.rdb |binary man/acc.Rd | 6 ++--- man/bias.Rd | 4 +-- man/measures.Rd | 3 +- man/mlr3measures-package.Rd | 2 - man/pbias.Rd | 4 +-- man/sae.Rd | 13 ++++++++-- man/sse.Rd | 13 ++++++++-- tests/testthat/test_binary.R | 11 +++++---- tests/testthat/test_classif.R | 12 +++++----- tests/testthat/test_regr.R | 34 +++++++--------------------- 26 files changed, 157 insertions(+), 101 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Designed for simplicity, a 'mirai' evaluates an R expression
asynchronously in a parallel process, locally or distributed over the
network. Modern networking and concurrency, built on 'nanonext' and
'NNG', ensures reliable scheduling over fast inter-process
communications or TCP/IP secured by TLS. Launch remote resources via
SSH or cluster managers for distributed computing. Scales efficiently
to millions of tasks over thousands of connections, requiring no
storage on the file system due to its inherently queued architecture.
Innovative features include event-driven promises, asynchronous
parallel map, and seamless serialization of otherwise non-exportable
reference objects.
Author: Charlie Gao [aut, cre] ,
Joe Cheng [ctb],
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between mirai versions 2.4.1 dated 2025-07-15 and 2.5.0 dated 2025-09-04
mirai-2.4.1/mirai/inst/doc/v05-packages.Rmd |only mirai-2.4.1/mirai/inst/doc/v05-packages.html |only mirai-2.4.1/mirai/inst/doc/v06-questions.Rmd |only mirai-2.4.1/mirai/inst/doc/v06-questions.html |only mirai-2.4.1/mirai/vignettes/v05-packages.Rmd |only mirai-2.4.1/mirai/vignettes/v06-questions.Rmd |only mirai-2.5.0/mirai/DESCRIPTION | 10 mirai-2.5.0/mirai/MD5 | 107 ++-- mirai-2.5.0/mirai/NAMESPACE | 5 mirai-2.5.0/mirai/NEWS.md | 40 + mirai-2.5.0/mirai/R/daemon.R | 101 ++-- mirai-2.5.0/mirai/R/daemons.R | 501 +++++++++++++--------- mirai-2.5.0/mirai/R/dispatcher.R | 98 ++-- mirai-2.5.0/mirai/R/launchers.R | 134 ++--- mirai-2.5.0/mirai/R/map.R | 148 +++--- mirai-2.5.0/mirai/R/mirai-package.R | 23 - mirai-2.5.0/mirai/R/mirai.R | 205 +++++---- mirai-2.5.0/mirai/R/next.R | 3 mirai-2.5.0/mirai/R/parallel.R | 22 mirai-2.5.0/mirai/R/promises.R | 40 - mirai-2.5.0/mirai/README.md | 272 ++++------- mirai-2.5.0/mirai/build/vignette.rds |binary mirai-2.5.0/mirai/inst/doc/mirai.Rmd | 362 ++++++++------- mirai-2.5.0/mirai/inst/doc/mirai.html | 331 +++++++------- mirai-2.5.0/mirai/inst/doc/v01-map.Rmd | 30 - mirai-2.5.0/mirai/inst/doc/v01-map.html | 30 - mirai-2.5.0/mirai/inst/doc/v02-promises.Rmd | 80 +-- mirai-2.5.0/mirai/inst/doc/v02-promises.html | 75 +-- mirai-2.5.0/mirai/inst/doc/v03-serialization.Rmd | 60 +- mirai-2.5.0/mirai/inst/doc/v03-serialization.html | 60 +- mirai-2.5.0/mirai/inst/doc/v04-parallel.Rmd | 18 mirai-2.5.0/mirai/inst/doc/v04-parallel.html | 18 mirai-2.5.0/mirai/inst/doc/v05-opentelemetry.Rmd |only mirai-2.5.0/mirai/inst/doc/v05-opentelemetry.html |only mirai-2.5.0/mirai/inst/doc/v06-packages.Rmd |only mirai-2.5.0/mirai/inst/doc/v06-packages.html |only mirai-2.5.0/mirai/inst/doc/v07-questions.Rmd |only mirai-2.5.0/mirai/inst/doc/v07-questions.html |only mirai-2.5.0/mirai/man/call_mirai.Rd | 3 mirai-2.5.0/mirai/man/collect_mirai.Rd | 14 mirai-2.5.0/mirai/man/daemon.Rd | 21 mirai-2.5.0/mirai/man/daemons.Rd | 39 - mirai-2.5.0/mirai/man/daemons_set.Rd | 7 mirai-2.5.0/mirai/man/dispatcher.Rd | 19 mirai-2.5.0/mirai/man/everywhere.Rd | 29 - mirai-2.5.0/mirai/man/info.Rd |only mirai-2.5.0/mirai/man/launch_local.Rd | 26 - mirai-2.5.0/mirai/man/make_cluster.Rd | 7 mirai-2.5.0/mirai/man/mirai-package.Rd | 9 mirai-2.5.0/mirai/man/mirai.Rd | 7 mirai-2.5.0/mirai/man/mirai_map.Rd | 2 mirai-2.5.0/mirai/man/require_daemons.Rd | 16 mirai-2.5.0/mirai/man/status.Rd | 3 mirai-2.5.0/mirai/man/with_daemons.Rd |only mirai-2.5.0/mirai/tests/tests.R | 220 ++++++--- mirai-2.5.0/mirai/vignettes/mirai.Rmd | 362 ++++++++------- mirai-2.5.0/mirai/vignettes/v01-map.Rmd | 30 - mirai-2.5.0/mirai/vignettes/v02-promises.Rmd | 80 +-- mirai-2.5.0/mirai/vignettes/v03-serialization.Rmd | 60 +- mirai-2.5.0/mirai/vignettes/v04-parallel.Rmd | 18 mirai-2.5.0/mirai/vignettes/v05-opentelemetry.Rmd |only mirai-2.5.0/mirai/vignettes/v06-packages.Rmd |only mirai-2.5.0/mirai/vignettes/v07-questions.Rmd |only 63 files changed, 1926 insertions(+), 1819 deletions(-)
Title: Obtaining Open Data from Instituto Canario De Estadistica
(ISTAC) API
Description: You can access to open data published in Instituto Canario De Estadistica (ISTAC) APIs at <https://datos.canarias.es/api/estadisticas/>.
Author: Alberto Gonzalez [cph],
Elisa Jorge [aut, cre]
Maintainer: Elisa Jorge <ejorgon@gobiernodecanarias.org>
Diff between istacr versions 0.2.2 dated 2022-12-20 and 0.3.0 dated 2025-09-04
DESCRIPTION | 21 MD5 | 166 ++- NAMESPACE | 134 +-- R/indicators-geographic.R | 122 +- R/indicators-indicators.R | 149 +-- R/indicators-systems.R | 212 ++--- R/services.R | 361 ++++---- R/statistical-resources-cubes.R | 194 ++-- R/statistical-resources-queries.R | 130 +-- R/structural-resources-category.R | 424 +++++----- R/structural-resources-clasifications.R | 360 ++++---- R/structural-resources-concepts.R | 292 +++--- R/structural-resources-datastructures.R | 368 ++++---- R/structural-resources-variables.R | 264 +++--- README.md |only man/docs |only man/get_indicators.Rd | 82 - man/get_indicators_code.Rd | 40 man/get_indicators_code_data.Rd | 76 - man/get_indicators_geographic_granularities.Rd | 30 man/get_indicators_geographical_values.Rd | 60 - man/get_indicators_subjects.Rd | 30 man/get_indicators_systems.Rd | 50 - man/get_indicators_systems_code.Rd | 40 man/get_indicators_systems_code_instances.Rd | 92 +- man/get_indicators_systems_code_instances_code.Rd | 54 - man/get_indicators_systems_code_instances_code_data.Rd | 72 - man/get_indicators_time_granularities.Rd | 32 man/get_statisticalresources_datasets.Rd | 62 - man/get_statisticalresources_datasets_agency.Rd | 68 - man/get_statisticalresources_datasets_agency_resource.Rd | 82 - man/get_statisticalresources_datasets_agency_resource_version.Rd | 90 +- man/get_statisticalresources_queries.Rd | 62 - man/get_statisticalresources_queries_agency.Rd | 68 - man/get_statisticalresources_queries_agency_resource.Rd | 78 - man/get_structuralresources_categorisations.Rd | 64 - man/get_structuralresources_categorisations_agency.Rd | 62 - man/get_structuralresources_categorisations_agency_resource.Rd | 68 - man/get_structuralresources_categorisations_agency_resource_version.Rd | 58 - man/get_structuralresources_category_schemes.Rd | 64 - man/get_structuralresources_category_schemes_agency.Rd | 70 - man/get_structuralresources_category_schemes_agency_resource.Rd | 74 - man/get_structuralresources_category_schemes_agency_resource_version.Rd | 58 - man/get_structuralresources_category_schemes_agency_resource_version_categories.Rd | 82 - man/get_structuralresources_category_schemes_agency_resource_version_categories_id.Rd | 78 - man/get_structuralresources_codelist_families.Rd | 56 - man/get_structuralresources_codelist_families_id.Rd | 34 man/get_structuralresources_codelists.Rd | 56 - man/get_structuralresources_codelists_agency.Rd | 64 - man/get_structuralresources_codelists_agency_resource.Rd | 70 - man/get_structuralresources_codelists_agency_resource_version.Rd | 58 - man/get_structuralresources_codelists_agency_resource_version_codes.Rd | 110 +- man/get_structuralresources_codelists_agency_resource_version_codes_codeid.Rd | 58 - man/get_structuralresources_codelists_agency_resource_version_recode.Rd |only man/get_structuralresources_codelists_agency_resource_version_restrictions.Rd |only man/get_structuralresources_concept_schemes.Rd | 64 - man/get_structuralresources_concept_schemes_agency.Rd | 72 - man/get_structuralresources_concept_schemes_agency_resource.Rd | 74 - man/get_structuralresources_concept_schemes_agency_resource_version.Rd | 58 - man/get_structuralresources_concept_schemes_agency_resource_version_concepts.Rd | 90 +- man/get_structuralresources_concept_schemes_agency_resource_version_concepts_id.Rd | 68 - man/get_structuralresources_concept_types.Rd | 28 man/get_structuralresources_content_constraints.Rd | 64 - man/get_structuralresources_content_constraints_agency.Rd | 62 - man/get_structuralresources_content_constraints_agency_resource.Rd | 74 - man/get_structuralresources_content_constraints_agency_resource_version.Rd | 58 - man/get_structuralresources_content_constraints_agency_resource_version_regions.Rd | 68 - man/get_structuralresources_data_structures.Rd | 64 - man/get_structuralresources_data_structures_agency.Rd | 62 - man/get_structuralresources_data_structures_agency_resource.Rd | 74 - man/get_structuralresources_data_structures_agency_resource_version.Rd | 60 - man/get_structuralresources_geoinfo.Rd | 76 - man/get_structuralresources_variable_families.Rd | 56 - man/get_structuralresources_variable_families_id.Rd | 34 man/get_structuralresources_variable_families_id_variables.Rd | 62 - man/get_structuralresources_variableelements.Rd | 62 - man/get_structuralresources_variableelements_resource.Rd | 38 man/get_structuralresources_variables.Rd | 56 - man/get_structuralresources_variables_id.Rd | 34 79 files changed, 3573 insertions(+), 3434 deletions(-)
Title: Reproducible Integrated Species Distribution Models Across
Norway using 'INLA'
Description: Integration of disparate datasets is needed in order to make efficient use of all available data and thereby address the issues currently threatening biodiversity.
Data integration is a powerful modeling framework which allows us to combine these datasets together into a single model, yet retain the strengths of each individual dataset.
We therefore introduce the package, 'intSDM': an R package designed to help ecologists develop a reproducible workflow of integrated species distribution models, using data both provided from the user as well as data obtained freely online.
An introduction to data integration methods is discussed in Issac, Jarzyna, Keil, Dambly, Boersch-Supan, Browning, Freeman, Golding, Guillera-Arroita, Henrys, Jarvis, Lahoz-Monfort, Pagel, Pescott, Schmucki, Simmonds and O’Hara (2020) <doi:10.1016/j.tree.2019.08.006>.
Author: Philip Mostert [aut, cre],
Angeline Bruls [aut],
Ragnhild {Bjoerkas} [aut],
Wouter Koch [aut],
Ellen Martin [aut]
Maintainer: Philip Mostert <philip.s.mostert@ntnu.no>
This is a re-admission after prior archival of version 2.1.1 dated 2025-01-13
Diff between intSDM versions 2.1.1 dated 2025-01-13 and 2.1.2 dated 2025-09-04
DESCRIPTION | 10 - MD5 | 30 ++-- R/initValues.R | 3 R/obtainRichness.R | 11 + R/species_model.R | 38 +++++- inst/doc/PennsylvaniaWarbler.R | 178 ++++++++++++++-------------- inst/doc/RedList.R | 214 +++++++++++++++++----------------- inst/doc/RedList.html | 4 inst/doc/Richness.R | 134 ++++++++++----------- inst/doc/Richness.html | 4 man/obtainRichness.Rd | 2 man/species_model.Rd | 3 tests/testthat/test-initValues.R | 2 tests/testthat/test-obtainCovariate.R | 4 tests/testthat/test-obtainRichness.R | 12 + tests/testthat/test-sdmWorkflow.R | 12 - 16 files changed, 352 insertions(+), 309 deletions(-)
Title: A Grammar of Animated Graphics
Description: The grammar of graphics as implemented in the 'ggplot2'
package has been successful in providing a powerful API for creating
static visualisation. In order to extend the API for animated graphics
this package provides a completely new set of grammar, fully
compatible with 'ggplot2' for specifying transitions and animations in
a flexible and extensible way.
Author: Thomas Lin Pedersen [aut, cre] ,
David Robinson [aut],
Posit, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between gganimate versions 1.0.10 dated 2025-06-21 and 1.0.11 dated 2025-09-04
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/plot-build.R | 14 ++++++-------- R/scene.R | 2 +- inst/doc/gganimate.R | 10 +++++----- inst/doc/gganimate.html | 9 +++++---- man/figures/README-unnamed-chunk-2-1.gif |binary 9 files changed, 33 insertions(+), 29 deletions(-)
Title: 'IUCN' Red List Client
Description: 'IUCN' Red List (<https://api.iucnredlist.org/>) client.
The 'IUCN' Red List is a global list of threatened and endangered species.
Functions cover all of the Red List 'API' routes. An 'API' key is required.
Author: William Gearty [aut, cre] ,
Scott Chamberlain [aut] ,
rOpenSci [fnd] ,
Maelle Salmon [ctb] ,
Kevin Cazelles [rev] ,
Stephanie Hazlitt [rev]
Maintainer: William Gearty <willgearty@gmail.com>
Diff between rredlist versions 1.1.0 dated 2025-07-27 and 1.1.1 dated 2025-09-04
rredlist-1.1.0/rredlist/vignettes/source |only rredlist-1.1.1/rredlist/DESCRIPTION | 29 + rredlist-1.1.1/rredlist/MD5 | 39 +- rredlist-1.1.1/rredlist/NEWS.md | 11 rredlist-1.1.1/rredlist/R/rl_assessment.R | 203 ++++++------ rredlist-1.1.1/rredlist/inst/CITATION | 2 rredlist-1.1.1/rredlist/inst/doc/benchmarks.Rmd | 69 +--- rredlist-1.1.1/rredlist/inst/doc/benchmarks.html | 69 +--- rredlist-1.1.1/rredlist/inst/doc/research_workflows.Rmd | 94 ++--- rredlist-1.1.1/rredlist/inst/doc/research_workflows.html | 97 ++--- rredlist-1.1.1/rredlist/inst/doc/rredlist.Rmd | 32 - rredlist-1.1.1/rredlist/inst/doc/rredlist.html | 74 ++-- rredlist-1.1.1/rredlist/man/rl_assessment_extract.Rd | 19 - rredlist-1.1.1/rredlist/man/rredlist-package.Rd | 8 rredlist-1.1.1/rredlist/tests/testthat/test-rl_assessment.R | 21 + rredlist-1.1.1/rredlist/vignettes/benchmarks.Rmd | 69 +--- rredlist-1.1.1/rredlist/vignettes/research_workflows.Rmd | 94 ++--- rredlist-1.1.1/rredlist/vignettes/rredlist.Rmd | 32 - rredlist-1.1.1/rredlist/vignettes/unnamed-chunk-20-1.png |only rredlist-1.1.1/rredlist/vignettes/unnamed-chunk-21-1.png |only rredlist-1.1.1/rredlist/vignettes/unnamed-chunk-27-1.png |only rredlist-1.1.1/rredlist/vignettes/unnamed-chunk-7-1.png |only 22 files changed, 468 insertions(+), 494 deletions(-)
Title: Mocking Library for R
Description: The two main functionalities of this package are creating
mock objects (functions) and selectively intercepting calls to a given
function that originate in some other function. It can be used with
any testing framework available for R. Mock objects can be injected
with either this package's own stub() function or a similar
with_mocked_binding() facility present in the 'testthat' package.
Author: Noam Finkelstein [aut],
Lukasz Bartnik [aut],
Jim Hester [aut],
Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between mockery versions 0.4.4 dated 2023-09-26 and 0.4.5 dated 2025-09-04
mockery-0.4.4/mockery/man/mockery.Rd |only mockery-0.4.5/mockery/DESCRIPTION | 15 +-- mockery-0.4.5/mockery/LICENSE | 4 mockery-0.4.5/mockery/MD5 | 36 ++++---- mockery-0.4.5/mockery/NEWS.md | 5 + mockery-0.4.5/mockery/R/expectations.R | 6 - mockery-0.4.5/mockery/R/mock-object.R | 43 +++++---- mockery-0.4.5/mockery/R/mockery.R | 30 ------ mockery-0.4.5/mockery/R/stub.R | 2 mockery-0.4.5/mockery/README.md | 11 +- mockery-0.4.5/mockery/build/vignette.rds |binary mockery-0.4.5/mockery/inst/doc/mocks-and-testthat.R | 71 +++++++--------- mockery-0.4.5/mockery/inst/doc/mocks-and-testthat.Rmd | 56 +++++------- mockery-0.4.5/mockery/inst/doc/mocks-and-testthat.html | 60 ++++++------- mockery-0.4.5/mockery/man/call-expectations.Rd | 6 - mockery-0.4.5/mockery/man/mock.Rd | 39 ++++---- mockery-0.4.5/mockery/man/mockery-package.Rd |only mockery-0.4.5/mockery/man/stub.Rd | 2 mockery-0.4.5/mockery/tests/testthat/test-mock-object.R | 58 ++++++------- mockery-0.4.5/mockery/vignettes/mocks-and-testthat.Rmd | 56 +++++------- 20 files changed, 235 insertions(+), 265 deletions(-)
Title: Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
Description: Create and customize interactive maps using the 'Leaflet'
JavaScript library and the 'htmlwidgets' package. These maps can be
used directly from the R console, from 'RStudio', in Shiny
applications and R Markdown documents.
Author: Joe Cheng [aut],
Barret Schloerke [aut] ,
Bhaskar Karambelkar [aut],
Yihui Xie [aut],
Garrick Aden-Buie [aut, cre] ,
Hadley Wickham [ctb],
Kenton Russell [ctb],
Kent Johnson [ctb],
Vladimir Agafonkin [ctb, cph] ,
CloudMade [cph] ,
Leaflet contributor [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@posit.co>
Diff between leaflet versions 2.2.2 dated 2024-03-26 and 2.2.3 dated 2025-09-04
leaflet-2.2.2/leaflet/man/derivePolygons.Rd |only leaflet-2.2.2/leaflet/man/leaflet-imports.Rd |only leaflet-2.2.3/leaflet/DESCRIPTION | 35 leaflet-2.2.3/leaflet/LICENSE |only leaflet-2.2.3/leaflet/LICENSE.note | 10 leaflet-2.2.3/leaflet/MD5 | 169 - leaflet-2.2.3/leaflet/NAMESPACE | 1 leaflet-2.2.3/leaflet/NEWS.md | 26 leaflet-2.2.3/leaflet/R/colors.R | 86 - leaflet-2.2.3/leaflet/R/controls.R | 4 leaflet-2.2.3/leaflet/R/data.R | 38 leaflet-2.2.3/leaflet/R/layers.R | 1108 +++++++++---- leaflet-2.2.3/leaflet/R/leaflet-package.R | 13 leaflet-2.2.3/leaflet/R/leaflet.R | 73 leaflet-2.2.3/leaflet/R/legacy.R | 3 leaflet-2.2.3/leaflet/R/legend.R | 66 leaflet-2.2.3/leaflet/R/mapPane.R | 14 leaflet-2.2.3/leaflet/R/methods.R | 6 leaflet-2.2.3/leaflet/R/normalize-sp.R | 44 leaflet-2.2.3/leaflet/R/normalize-terra.R | 3 leaflet-2.2.3/leaflet/R/normalize.R | 43 leaflet-2.2.3/leaflet/R/plugin-awesomeMarkers.R | 67 leaflet-2.2.3/leaflet/R/plugin-easybutton.R | 14 leaflet-2.2.3/leaflet/R/plugin-graticule.R | 6 leaflet-2.2.3/leaflet/R/plugin-measure.R | 10 leaflet-2.2.3/leaflet/R/plugin-minimap.R | 14 leaflet-2.2.3/leaflet/R/plugin-providers.R | 36 leaflet-2.2.3/leaflet/R/plugin-simplegraticule.R | 5 leaflet-2.2.3/leaflet/R/plugin-terminator.R | 4 leaflet-2.2.3/leaflet/R/scalebar.R | 18 leaflet-2.2.3/leaflet/R/shiny.R | 6 leaflet-2.2.3/leaflet/R/staticimports.R | 18 leaflet-2.2.3/leaflet/R/utils.R | 98 - leaflet-2.2.3/leaflet/data/atlStorms2005.rda |binary leaflet-2.2.3/leaflet/data/breweries91.rda |binary leaflet-2.2.3/leaflet/data/gadmCHE.rda |binary leaflet-2.2.3/leaflet/man/addAwesomeMarkers.Rd | 12 leaflet-2.2.3/leaflet/man/addGraticule.Rd | 9 leaflet-2.2.3/leaflet/man/addLayersControl.Rd | 10 leaflet-2.2.3/leaflet/man/addLegend.Rd | 23 leaflet-2.2.3/leaflet/man/addMapPane.Rd | 6 leaflet-2.2.3/leaflet/man/addMiniMap.Rd | 16 leaflet-2.2.3/leaflet/man/addProviderTiles.Rd | 16 leaflet-2.2.3/leaflet/man/addRasterImage.Rd | 22 leaflet-2.2.3/leaflet/man/addScaleBar.Rd | 6 leaflet-2.2.3/leaflet/man/addSimpleGraticule.Rd | 9 leaflet-2.2.3/leaflet/man/addTerminator.Rd | 2 leaflet-2.2.3/leaflet/man/atlStorms2005.Rd | 8 leaflet-2.2.3/leaflet/man/awesomeIconList.Rd | 2 leaflet-2.2.3/leaflet/man/awesomeIcons.Rd | 18 leaflet-2.2.3/leaflet/man/breweries91.Rd | 8 leaflet-2.2.3/leaflet/man/colorNumeric.Rd | 63 leaflet-2.2.3/leaflet/man/deprecated.Rd | 1 leaflet-2.2.3/leaflet/man/derivePoints.Rd | 29 leaflet-2.2.3/leaflet/man/dispatch.Rd | 18 leaflet-2.2.3/leaflet/man/easyButton.Rd | 8 leaflet-2.2.3/leaflet/man/evalFormula.Rd | 7 leaflet-2.2.3/leaflet/man/expandLimitsBbox.Rd | 5 leaflet-2.2.3/leaflet/man/filterNULL.Rd | 10 leaflet-2.2.3/leaflet/man/gadmCHE.Rd | 10 leaflet-2.2.3/leaflet/man/getMapData.Rd | 7 leaflet-2.2.3/leaflet/man/groupOptions.Rd | 4 leaflet-2.2.3/leaflet/man/iconList.Rd | 2 leaflet-2.2.3/leaflet/man/icons.Rd | 7 leaflet-2.2.3/leaflet/man/leaflet-package.Rd | 3 leaflet-2.2.3/leaflet/man/leaflet.Rd | 31 leaflet-2.2.3/leaflet/man/leafletProxy.Rd | 10 leaflet-2.2.3/leaflet/man/leafletSizingPolicy.Rd | 42 leaflet-2.2.3/leaflet/man/makeAwesomeIcon.Rd | 7 leaflet-2.2.3/leaflet/man/makeIcon.Rd | 2 leaflet-2.2.3/leaflet/man/map-layers.Rd | 36 leaflet-2.2.3/leaflet/man/map-methods.Rd | 2 leaflet-2.2.3/leaflet/man/map-options.Rd | 24 leaflet-2.2.3/leaflet/man/map-shiny.Rd | 2 leaflet-2.2.3/leaflet/man/mapOptions.Rd | 2 leaflet-2.2.3/leaflet/man/previewColors.Rd | 2 leaflet-2.2.3/leaflet/man/providers.Rd | 3 leaflet-2.2.3/leaflet/man/reexports.Rd |only leaflet-2.2.3/leaflet/man/remove.Rd | 28 leaflet-2.2.3/leaflet/man/safeLabel.Rd | 2 leaflet-2.2.3/leaflet/man/showGroup.Rd | 4 leaflet-2.2.3/leaflet/tests/testthat/_snaps/normalize-2.md | 2 leaflet-2.2.3/leaflet/tests/testthat/helper.R | 2 leaflet-2.2.3/leaflet/tests/testthat/test-normalize-2.R | 30 leaflet-2.2.3/leaflet/tests/testthat/test-normalize-3.R | 8 leaflet-2.2.3/leaflet/tests/testthat/test-normalize.R | 20 leaflet-2.2.3/leaflet/tests/testthat/test-raster.R | 6 leaflet-2.2.3/leaflet/tests/testthat/test-tiles.R |only 88 files changed, 1611 insertions(+), 1033 deletions(-)
Title: Data for Generalized Additive Models for Location Scale and
Shape
Description: Data used as examples in the books on Generalized Additive Models for Location Scale and Shape:
Stasinopoulos, Rigby, Heller, Voudouris, De Bastiani (2017). Flexible Regression and Smoothing: Using GAMLSS in R, <doi:10.1201/b21973>.
Rigby, Stasinopoulos, Heller, De Bastiani (2019). Distributions for Modeling Location, Scale, and Shape Using GAMLSS in R, <doi:10.1201/9780429298547>.
Stasinopoulos, Kneib, Klein, Mayr, Heller (2024). Generalized Additive Models for Location, Scale and Shape: A Distributional Regression Approach, with Applications, <doi:10.1017/9781009410076>.
Author: Mikis Stasinopoulos [aut, cre] ,
Robert Rigby [aut] ,
Fernanda De Bastiani [ctb]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@gre.ac.uk>
Diff between gamlss.data versions 6.0-6 dated 2024-03-14 and 6.0-7 dated 2025-09-04
gamlss.data-6.0-6/gamlss.data/data/trd.RData |only gamlss.data-6.0-6/gamlss.data/man/trd.Rd |only gamlss.data-6.0-7/gamlss.data/DESCRIPTION | 34 ++++++++++++++++-------- gamlss.data-6.0-7/gamlss.data/MD5 | 11 ++++--- gamlss.data-6.0-7/gamlss.data/NEWS.md |only gamlss.data-6.0-7/gamlss.data/README.md | 13 +++++++-- gamlss.data-6.0-7/gamlss.data/build/partial.rdb |binary gamlss.data-6.0-7/gamlss.data/data/triceps.rda |only gamlss.data-6.0-7/gamlss.data/man/triceps.Rd |only 9 files changed, 40 insertions(+), 18 deletions(-)
Title: Data Sets for Econometrics
Description: Data sets for econometrics, including political science.
Author: Yves Croissant [aut],
Spencer Graves [aut, cre, ctb]
Maintainer: Spencer Graves <spencer.graves@effectivedefense.org>
Diff between Ecdat versions 0.4-2 dated 2022-10-15 and 0.4.7 dated 2025-09-04
DESCRIPTION | 24 ++- MD5 | 76 +++++----- NEWS.md | 6 build/partial.rdb |binary data/ACLEDpopGDP.rda |only data/USGDPpresidents.rda |binary data/USincarcerations.rda |binary inst/WORDLIST | 6 man/ACLEDpopGDP.Rd |only man/Accident.Rd | 2 man/Bids.Rd | 2 man/CRSPday.Rd | 2 man/CRSPmon.Rd | 2 man/Caschool.Rd | 4 man/DM.Rd | 2 man/Diamond.Rd | 2 man/DoctorAUS.Rd | 2 man/FriendFoe.Rd | 2 man/Griliches.Rd | 2 man/Index.Source.Rd | 6 man/LT.Rd | 2 man/Mishkin.Rd | 2 man/Mpyr.Rd | 2 man/OCC1950.Rd | 20 ++ man/OFP.Rd | 2 man/Oil.Rd | 2 man/PatentsHGH.Rd | 2 man/Pound.Rd | 2 man/Somerville.Rd | 2 man/StrikeNb.Rd | 2 man/SumHes.Rd | 2 man/USFinanceIndustry.Rd | 4 man/USGDPpresidents.Rd | 314 +++++++++++++++++++++++++++++++------------- man/USincarcerations.Rd | 47 +++++- man/USstateAbbreviations.Rd | 8 - man/UStaxWords.Rd | 2 man/Yen.Rd | 2 man/breaches.Rd | 4 man/nuclearWeaponStates.Rd | 41 ++--- man/terrorism.Rd | 28 ++- 40 files changed, 422 insertions(+), 208 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that
cannot be directly estimated from the data). These tools can be used
to define objects for creating, simulating, or validating values for
such parameters.
Author: Max Kuhn [aut],
Hannah Frick [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between dials versions 1.4.1 dated 2025-07-29 and 1.4.2 dated 2025-09-04
DESCRIPTION | 6 +++--- MD5 | 29 ++++++++++++++++------------- NAMESPACE | 1 + NEWS.md | 9 +++++++++ R/aaa_values.R | 12 ++++++++++++ R/finalize.R | 11 +++++++++-- R/param_network.R | 4 ++-- R/param_prop_terms.R |only R/param_range_limits.R | 10 ++++++++-- man/dropout.Rd | 2 +- man/finalize.Rd | 3 --- man/get_batch_sizes.Rd |only man/prop_terms.Rd |only tests/testthat/_snaps/finalize.md | 8 ++++++++ tests/testthat/test-aaa_values.R | 23 +++++++++++++++++++++++ tests/testthat/test-finalize.R | 27 ++++++++++++++++++++++++--- tests/testthat/test-params.R | 1 + 17 files changed, 117 insertions(+), 29 deletions(-)
Title: 'C++' Standard Template Library Containers
Description: Use 'C++' Standard Template Library containers interactively in R. Includes sets, unordered sets, multisets, unordered multisets, maps,
unordered maps, multimaps, unordered multimaps, stacks, queues, priority queues, vectors, deques, forward lists, and lists.
Author: Christian Dueben [aut, cre]
Maintainer: Christian Dueben <cdueben.ml+cran@proton.me>
This is a re-admission after prior archival of version 1.0.4 dated 2025-01-15
Diff between cppcontainers versions 1.0.4 dated 2025-01-15 and 1.0.5 dated 2025-09-04
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/print.R | 8 ++++---- R/to_r.R | 8 ++++---- R/utils.R | 8 ++++---- build/vignette.rds |binary tests/testthat.R | 24 ++++++++++++------------ 7 files changed, 34 insertions(+), 34 deletions(-)
Title: Synthetic Microdata Generator
Description: This tool fits a non-parametric Bayesian model called a "hierarchically coupled mixture model with local dependence (HCMM-LD)" to the original microdata in order to generate synthetic microdata for privacy protection. The non-parametric feature of the adopted model is useful for capturing the joint distribution of the original input data in a highly flexible manner, leading to the generation of synthetic data whose distributional features are similar to that of the input data. The package allows the original input data to have missing values and impute them with the posterior predictive distribution, so no missing values exist in the synthetic data output. The method builds on the work of Murray and Reiter (2016) <doi:10.1080/01621459.2016.1174132>.
Author: Juhee Lee [aut, cre],
Hang J. Kim [aut],
Young-Min Kim [aut],
Jared Murray [aut]
Maintainer: Juhee Lee <ljh988488@gmail.com>
Diff between synMicrodata versions 2.1.0 dated 2024-11-21 and 2.1.1 dated 2025-09-04
DESCRIPTION | 20 ++++++++++---------- MD5 | 2 +- 2 files changed, 11 insertions(+), 11 deletions(-)
Title: Interactively Filter SNP Datasets
Description: Is designed to interactively and reproducibly visualize and filter SNP
(single-nucleotide polymorphism) datasets. This R-based implementation of SNP
and genotype filters facilitates
an interactive and iterative SNP filtering pipeline, which can be documented
reproducibly via 'rmarkdown'. 'SNPfiltR' contains functions for visualizing
various quality and missing data metrics for a SNP dataset, and then filtering
the dataset based on user specified cutoffs.
All functions take 'vcfR' objects as input, which can easily be
generated by reading standard vcf (variant call format) files into R using
the R package 'vcfR' authored by Knaus and Grünwald (2017) <doi:10.1111/1755-0998.12549>.
Each 'SNPfiltR' function can return a newly filtered 'vcfR' object, which can then be
written to a local directory in standard vcf format using the 'vcfR' package,
for downstream population genetic and phylogenetic analyses.
Author: Devon DeRaad [aut, cre]
Maintainer: Devon DeRaad <devonderaad@gmail.com>
This is a re-admission after prior archival of version 1.0.1 dated 2023-03-17
Diff between SNPfiltR versions 1.0.1 dated 2023-03-17 and 1.0.7 dated 2025-09-04
DESCRIPTION | 15 +++--- MD5 | 22 ++++----- R/assess_missing_data_pca.R | 12 +++-- R/assess_missing_data_tsne.R | 12 +++-- R/filter_allele_balance.R | 4 - R/missing_by_sample.R | 75 +++++++++++++++++++++----------- README.md | 35 +++++++++------ inst/doc/reproducible-vignette.R | 2 inst/doc/reproducible-vignette.Rmd | 4 - inst/doc/reproducible-vignette.html | 84 ++++++++++++++++++------------------ man/filter_allele_balance.Rd | 2 vignettes/reproducible-vignette.Rmd | 4 - 12 files changed, 158 insertions(+), 113 deletions(-)
Title: Read Census Privacy Protected Microdata Files
Description: Implements data processing described in <doi:10.1126/sciadv.abk3283>
to align modern differentially private data with formatting of older US Census
data releases. The primary goal is to read in Census Privacy Protected Microdata
Files data in a reproducible way. This includes tools for aggregating to relevant
levels of geography by creating geographic identifiers which match the US Census
Bureau's numbering. Additionally, there are tools for grouping race numeric
identifiers into categories, consistent with OMB (Office of Management and Budget)
classifications. Functions exist for downloading and linking to existing
sources of privacy protected microdata.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between ppmf versions 0.1.3 dated 2021-12-15 and 0.2.1 dated 2025-09-04
ppmf-0.1.3/ppmf/R/utils-pipe.R |only ppmf-0.1.3/ppmf/man/pipe.Rd |only ppmf-0.2.1/ppmf/DESCRIPTION | 39 ++- ppmf-0.2.1/ppmf/LICENSE | 4 ppmf-0.2.1/ppmf/MD5 | 59 ++--- ppmf-0.2.1/ppmf/NAMESPACE | 25 -- ppmf-0.2.1/ppmf/NEWS.md | 31 -- ppmf-0.2.1/ppmf/R/add_path.R | 305 ++++++++++++----------------- ppmf-0.2.1/ppmf/R/aggregate.R | 107 +++++----- ppmf-0.2.1/ppmf/R/data.R | 5 ppmf-0.2.1/ppmf/R/geoid.R | 37 +-- ppmf-0.2.1/ppmf/R/get_data.R | 98 +-------- ppmf-0.2.1/ppmf/R/ppmf-package.R |only ppmf-0.2.1/ppmf/R/race.R | 30 +- ppmf-0.2.1/ppmf/R/read.R |only ppmf-0.2.1/ppmf/R/read_merge.R | 10 ppmf-0.2.1/ppmf/README.md | 37 ++- ppmf-0.2.1/ppmf/inst/CITATION | 26 +- ppmf-0.2.1/ppmf/inst/WORDLIST |only ppmf-0.2.1/ppmf/man/add_geoid.Rd | 2 ppmf-0.2.1/ppmf/man/add_ppmf12_path.Rd | 60 ++--- ppmf-0.2.1/ppmf/man/add_ppmf19_path.Rd | 60 ++--- ppmf-0.2.1/ppmf/man/add_ppmf19r_path.Rd |only ppmf-0.2.1/ppmf/man/add_ppmf4_path.Rd | 60 ++--- ppmf-0.2.1/ppmf/man/agg.Rd | 2 ppmf-0.2.1/ppmf/man/breakdown_geoid.Rd | 4 ppmf-0.2.1/ppmf/man/download_ppmf.Rd | 5 ppmf-0.2.1/ppmf/man/figures/logo.png |binary ppmf-0.2.1/ppmf/man/get_ppmf_links.Rd | 58 ++--- ppmf-0.2.1/ppmf/man/overwrite_hisp_race.Rd | 2 ppmf-0.2.1/ppmf/man/races.Rd | 1 ppmf-0.2.1/ppmf/man/read_ppmf.Rd | 6 ppmf-0.2.1/ppmf/man/replace_race.Rd | 2 ppmf-0.2.1/ppmf/tests |only 34 files changed, 482 insertions(+), 593 deletions(-)
Title: Score Redistricting Plans with 'PlanScore'
Description: Provides access to the 'PlanScore' Application Programming Interface
(<https://github.com/PlanScore/PlanScore/blob/main/API.md>) for scoring redistricting
plans. Allows for upload of plans from block assignment files and shape files.
For shapes in memory, such as from 'sf' or 'redist', it processes them to save
and upload. Includes tools for tidying responses and saving output from the
website.
Author: Christopher T. Kenny [aut, trl, cre] ,
Michal Migurski [aut] ,
Cory McCartan [art]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between planscorer versions 0.0.2 dated 2024-09-24 and 0.0.3 dated 2025-09-04
DESCRIPTION | 15 LICENSE | 4 MD5 | 80 NAMESPACE | 30 NEWS.md | 5 R/PlanScoreR-package.R | 16 R/api_url.R | 14 R/capture.R | 70 R/ingest.R | 178 - R/key.R | 184 - R/model_versions.R | 32 R/save.R | 78 R/supported_states.R | 32 R/upload.R | 3 README.md | 167 - inst/CITATION | 48 inst/WORDLIST | 16 inst/extdata/null-plan-blockassignments.csv | 22 inst/extdata/null-plan-incumbency.geojson | 200 - inst/httptest2/redact.R | 14 man/figures/README-planscore.png |binary man/key.Rd | 44 man/ps_capture.Rd | 56 man/ps_ingest.Rd | 44 man/ps_model_versions.Rd | 36 man/ps_save.Rd | 64 man/ps_set_key.Rd | 56 man/ps_supported_states.Rd | 36 man/upload.Rd | 122 tests/spelling.R | 6 tests/testthat.R | 24 tests/testthat/setup.R | 2 tests/testthat/t/mdlvrs/model_versions.json | 20 tests/testthat/t/supsts/states.json | 1604 ++++++------ tests/testthat/t/upload_f/upload/temporary-2355f6-POST.json | 8 tests/testthat/t/upload_f/upload/temporary-56aa7b-POST.json | 8 tests/testthat/test-ingest.R | 10 tests/testthat/test-model_versions.R | 10 tests/testthat/test-save.R | 24 tests/testthat/test-supported_states.R | 10 tests/testthat/test-upload.R | 18 41 files changed, 1716 insertions(+), 1694 deletions(-)
Title: Pattern Causality Algorithm
Description: A comprehensive package for detecting and analyzing causal relationships in complex systems using pattern-based approaches. Key features include state space reconstruction, pattern identification, and causality strength evaluation.
Author: Stavros Stavroglou [aut, cre] ,
Athanasios Pantelous [aut] ,
Hui Wang [aut]
Maintainer: Stavros Stavroglou <stavros.k.stavroglou@gmail.com>
Diff between patterncausality versions 0.2.1 dated 2025-02-15 and 0.2.2 dated 2025-09-04
DESCRIPTION | 20 +++++++++++--------- MD5 | 14 +++++++------- inst/doc/advanced.html | 5 +++-- inst/doc/dynamic.html | 5 +++-- inst/doc/matrix.html | 11 ++++++----- inst/doc/parallel.html | 5 +++-- inst/doc/patterncausality.html | 5 +++-- inst/doc/series.html | 5 +++-- 8 files changed, 39 insertions(+), 31 deletions(-)
More information about patterncausality at CRAN
Permanent link
Title: Process Metadata from the 'Open Graph Protocol'
Description: Social media sites often embed cards when links are shared, based on
metadata in the 'Open Graph Protocol' (<https://ogp.me/>). This supports extracting
that metadata from a website. It further allows for the creation of tags to
add to a website to support the 'Open Graph Protocol' and provides a list of the
standard tags and their required properties.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between opengraph versions 0.0.2 dated 2024-12-10 and 0.0.3 dated 2025-09-04
DESCRIPTION | 17 +- LICENSE | 4 MD5 | 46 +++--- NAMESPACE | 14 +- NEWS.md | 6 R/create.R | 106 +++++++-------- R/parse.R | 76 +++++------ R/property.R | 52 +++---- R/schema.R | 274 ++++++++++++++++++++--------------------- R/validate.R | 40 ++--- README.md | 131 +++++++++---------- inst/WORDLIST | 8 - man/og_create.Rd | 68 +++++----- man/og_parse.Rd | 40 ++--- man/og_property.Rd | 44 +++--- man/og_schema.Rd | 38 ++--- man/og_validate.Rd | 42 +++--- tests/spelling.R | 6 tests/testthat.R | 24 +-- tests/testthat/test-create.R | 42 +++--- tests/testthat/test-parse.R | 8 - tests/testthat/test-property.R | 8 - tests/testthat/test-schema.R | 6 tests/testthat/test-validate.R | 16 +- 24 files changed, 558 insertions(+), 558 deletions(-)
Title: Fast and Efficient (Automated) Analysis of Sparse Omics Data
Description: A generalised data structure for fast and efficient loading and data munching of sparse omics data. The 'OmicFlow' requires an up-front validated metadata template from the user,
which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an 'omics' class.
Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated 'autoFlow' method to generate a comprehensive report.
Author: Alem Gusinac [aut, cre] ,
Thomas Ederveen [aut] ,
Annemarie Boleij [aut, fnd]
Maintainer: Alem Gusinac <alem.gusinac@gmail.com>
Diff between OmicFlow versions 1.3.0 dated 2025-09-01 and 1.3.1 dated 2025-09-04
OmicFlow-1.3.0/OmicFlow/tests/testthat/_snaps |only OmicFlow-1.3.1/OmicFlow/DESCRIPTION | 8 ++--- OmicFlow-1.3.1/OmicFlow/MD5 | 22 ++++----------- OmicFlow-1.3.1/OmicFlow/R/omics-class.R | 2 - OmicFlow-1.3.1/OmicFlow/inst/report.Rmd | 2 - OmicFlow-1.3.1/OmicFlow/man/omics.Rd | 2 - OmicFlow-1.3.1/OmicFlow/tests/testthat.R | 2 - OmicFlow-1.3.1/OmicFlow/tests/testthat/test-autoflow.R | 2 - OmicFlow-1.3.1/OmicFlow/tests/testthat/test-write_biom.R | 2 - 9 files changed, 17 insertions(+), 25 deletions(-)
Title: Extended Agglomerative Hierarchical Clustering
Description: A comprehensive collection of linkage methods for agglomerative
hierarchical clustering on a matrix of proximity data (distances or
similarities), returning a multifurcated dendrogram or multidendrogram.
Multidendrograms can group more than two clusters when ties in proximity data
occur, and therefore they do not depend on the order of the input data.
Descriptive measures to analyze the resulting dendrogram are additionally
provided. <doi:10.18637/jss.v114.i02>.
Author: Alberto Fernandez [aut, cre] ,
Sergio Gomez [aut]
Maintainer: Alberto Fernandez <alberto.fernandez@urv.cat>
Diff between mdendro versions 2.2.2 dated 2025-08-20 and 2.2.3 dated 2025-09-04
DESCRIPTION | 10 ++++----- MD5 | 6 ++--- inst/CITATION | 60 +++++++++++++++++++++++++++++++++++++++++++++++---------- man/linkage.Rd | 45 ++++++++++++++++++++++++++---------------- 4 files changed, 86 insertions(+), 35 deletions(-)
Title: Calculation of Low Flow Statistics for Daily Stream Flow Data
Description: The "Manual on Low-flow Estimation and Prediction" (Gustard & Demuth (2009, ISBN:978-92-63-11029-9)), published by the World Meteorological Organisation, gives a comprehensive summary on how to analyse stream flow data focusing on low-flows. This packages provides functions to compute the described statistics and produces plots similar to the ones in the manual.
Author: Tobias Gauster [ctb, cre],
Gregor Laaha [aut] ,
Daniel Koffler [aut]
Maintainer: Tobias Gauster <t.gauster@gmail.com>
Diff between lfstat versions 0.9.12 dated 2022-11-08 and 0.9.13 dated 2025-09-04
lfstat-0.9.12/lfstat/man/rainpeakplot.Rd |only lfstat-0.9.13/lfstat/DESCRIPTION | 18 - lfstat-0.9.13/lfstat/MD5 | 69 ++-- lfstat-0.9.13/lfstat/NAMESPACE | 301 +++++++++++++-------- lfstat-0.9.13/lfstat/NEWS.md | 11 lfstat-0.9.13/lfstat/R/1NAs.R | 3 lfstat-0.9.13/lfstat/R/2processes.R | 4 lfstat-0.9.13/lfstat/R/3lfindices.R | 18 - lfstat-0.9.13/lfstat/R/4flowduration.R | 28 - lfstat-0.9.13/lfstat/R/5extreme.R | 39 +- lfstat-0.9.13/lfstat/R/6streamdef.R | 2 lfstat-0.9.13/lfstat/R/7multistation.R | 1 lfstat-0.9.13/lfstat/R/hyear.R | 13 lfstat-0.9.13/lfstat/R/lfobj.R | 20 + lfstat-0.9.13/lfstat/R/lfstat-package.R |only lfstat-0.9.13/lfstat/R/methods.R | 2 lfstat-0.9.13/lfstat/R/misc.R | 19 + lfstat-0.9.13/lfstat/R/options.R | 1 lfstat-0.9.13/lfstat/R/pooling.R | 27 + lfstat-0.9.13/lfstat/R/readsheets.R | 1 lfstat-0.9.13/lfstat/README.md | 10 lfstat-0.9.13/lfstat/build/partial.rdb |binary lfstat-0.9.13/lfstat/inst/WORDLIST | 6 lfstat-0.9.13/lfstat/man/apply.seasonal.Rd | 2 lfstat-0.9.13/lfstat/man/as.xts.lfobj.Rd | 2 lfstat-0.9.13/lfstat/man/cdf_ev.Rd | 4 lfstat-0.9.13/lfstat/man/fill_na.Rd | 2 lfstat-0.9.13/lfstat/man/flowunit.Rd | 2 lfstat-0.9.13/lfstat/man/lfstat-package.Rd | 2 lfstat-0.9.13/lfstat/man/plot.deficit.Rd | 4 lfstat-0.9.13/lfstat/man/recessionplot.Rd |only lfstat-0.9.13/lfstat/man/rfa.Rd | 4 lfstat-0.9.13/lfstat/man/rfaplot.Rd | 17 - lfstat-0.9.13/lfstat/man/sbplot.Rd | 2 lfstat-0.9.13/lfstat/man/seasindex.Rd | 4 lfstat-0.9.13/lfstat/man/seasratio.Rd | 2 lfstat-0.9.13/lfstat/tests/testthat/test-pooling.R | 4 37 files changed, 389 insertions(+), 255 deletions(-)
Title: Batch Experiments for 'mlr3'
Description: Extends the 'mlr3' package with a connector to the package
'batchtools'. This allows to run large-scale benchmark experiments on
scheduled high-performance computing clusters.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Toby Hocking [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3batchmark versions 0.2.1 dated 2025-05-26 and 0.2.2 dated 2025-09-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ man/mlr3batchmark-package.Rd | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Pedigree Functions
Description: Routines to handle family data with a pedigree object. The initial purpose
was to create correlation structures that describe family relationships such
as kinship and identity-by-descent, which can be used to model family data
in mixed effects models, such as in the coxme function. Also includes a tool
for pedigree drawing which is focused on producing compact layouts without
intervention. Recent additions include utilities to trim the pedigree object
with various criteria, and kinship for the X chromosome.
Author: Jason Sinnwell [aut, cre],
Terry Therneau [aut],
Daniel Schaid [ctb],
Elizabeth Atkinson [ctb],
Carly Mester [ctb]
Maintainer: Jason Sinnwell <sinnwell.jason@mayo.edu>
Diff between kinship2 versions 1.9.6.1 dated 2024-03-24 and 1.9.6.2 dated 2025-09-04
kinship2-1.9.6.1/kinship2/inst/doc/LICENSE |only kinship2-1.9.6.2/kinship2/DESCRIPTION | 9 kinship2-1.9.6.2/kinship2/MD5 | 34 - kinship2-1.9.6.2/kinship2/R/kinship2.R | 8 kinship2-1.9.6.2/kinship2/build/vignette.rds |binary kinship2-1.9.6.2/kinship2/inst/doc/GPL2.txt |only kinship2-1.9.6.2/kinship2/inst/doc/pedigree.Rmd | 2 kinship2-1.9.6.2/kinship2/inst/doc/pedigree.html | 280 ++++------ kinship2-1.9.6.2/kinship2/man/ibdMatrix.Rd | 3 kinship2-1.9.6.2/kinship2/tests/failure.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/makefam.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/monozygote.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/subscript.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/test.fixParents.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/test.kinX.Rout.save | 16 kinship2-1.9.6.2/kinship2/tests/test.pedigree.shrink.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/test.pedigree.unrelated.Rout.save | 12 kinship2-1.9.6.2/kinship2/tests/twin.Rout.save | 12 kinship2-1.9.6.2/kinship2/vignettes/pedigree.Rmd | 2 19 files changed, 218 insertions(+), 232 deletions(-)
Title: A Comprehensive Toolkit for Fast and Efficient Spatial
Interpolation
Description: Spatial interpolation toolkit designed for environmental and geospatial applications. It includes a range of methods, from traditional techniques to advanced machine learning approaches, ensuring accurate and efficient estimation of values in unobserved locations.
Author: Jonnathan Landi [aut, cre, cph] ,
Marco Mogro [aut]
Maintainer: Jonnathan Landi <jonnathan.landi@outlook.com>
Diff between InterpolateR versions 1.3-4 dated 2025-05-02 and 1.4-3 dated 2025-09-04
DESCRIPTION | 19 MD5 | 57 - NAMESPACE | 48 - NEWS.md | 99 +-- R/Cressman.R | 689 ++++++++++++--------- R/IDW.R | 661 ++++++++++++-------- R/Intr_Connections_module.R | 465 ++++++++------ R/Intr_gof.R | 256 ++++--- R/Kriging_Ordinary.R |only R/RFmerge.R | 644 ++++++++++---------- R/RFplus.R | 1061 ++++++++++++++++++--------------- R/create_data.R | 24 R/zzz.R | 129 ++-- README.md | 624 +++++++++---------- build/vignette.rds |binary inst/NEWS | 44 - inst/doc/InterpolateR.Rmd | 71 ++ inst/doc/InterpolateR.html | 111 +++ man/Cressman.Rd | 350 +++++----- man/IDW.Rd | 320 +++++---- man/Kriging_Ordinary.Rd |only man/RFmerge.Rd | 338 +++++----- man/RFplus.Rd | 384 +++++------ man/create_data.Rd | 104 +-- tests/testthat/test-Cressman.R | 307 +++++---- tests/testthat/test-IDW.R | 286 ++++---- tests/testthat/test-Kriging_Ordinary.R |only tests/testthat/test-RFmerge.R | 504 +++++++-------- tests/testthat/test-RFplus.R | 534 ++++++++-------- tests/testthat/test-create_data.R | 72 +- vignettes/InterpolateR.Rmd | 71 ++ 31 files changed, 4591 insertions(+), 3681 deletions(-)
Title: MCMC for Spike and Slab Regression
Description: Spike and slab regression with a variety of residual error
distributions corresponding to Gaussian, Student T, probit, logit, SVM, and a
few others. Spike and slab regression is Bayesian regression with prior
distributions containing a point mass at zero. The posterior updates the
amount of mass on this point, leading to a posterior distribution that is
actually sparse, in the sense that if you sample from it many coefficients are
actually zeros. Sampling from this posterior distribution is an elegant way
to handle Bayesian variable selection and model averaging. See
<DOI:10.1504/IJMMNO.2014.059942> for an explanation of the Gaussian case.
Author: Steven L. Scott [aut, cre]
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between BoomSpikeSlab versions 1.2.6 dated 2023-12-16 and 1.2.7 dated 2025-09-04
DESCRIPTION | 21 +++++++++++++-------- MD5 | 6 +++--- man/nnet.Rd | 20 ++++++++++---------- man/suggest.burn.Rd | 5 ++--- 4 files changed, 28 insertions(+), 24 deletions(-)
Title: Access Google Sheets using the Sheets API V4
Description: Interact with Google Sheets through the Sheets API v4
<https://developers.google.com/sheets/api>. "API" is an acronym for
"application programming interface"; the Sheets API allows users to
interact with Google Sheets programmatically, instead of via a web
browser. The "v4" refers to the fact that the Sheets API is currently
at version 4. This package can read and write both the metadata and
the cell data in a Sheet.
Author: Jennifer Bryan [cre, aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between googlesheets4 versions 1.1.1 dated 2023-06-10 and 1.1.2 dated 2025-09-03
DESCRIPTION | 13 + MD5 | 194 ++++++++++++++-------------- NAMESPACE | 3 NEWS.md | 5 R/batch-update-requests.R | 85 +++++++----- R/ctype.R | 133 ++++++++++--------- R/get_cells.R | 53 ++++--- R/googlesheets4-package.R | 1 R/gs4_auth.R | 67 ++++++--- R/gs4_create.R | 22 +-- R/gs4_example.R | 32 ++-- R/gs4_formula.R | 10 + R/gs4_get.R | 6 R/gs4_share.R | 19 +- R/make_column.R | 18 +- R/range_add_named.R | 25 ++- R/range_add_protection.R | 49 ++++--- R/range_add_validation.R | 28 ++-- R/range_autofit.R | 24 ++- R/range_delete.R | 41 +++-- R/range_flood.R | 43 +++--- R/range_read.R | 79 +++++++---- R/range_read_cells.R | 21 +-- R/range_spec.R | 60 +++++--- R/range_speedread.R | 18 +- R/range_write.R | 32 +++- R/request_generate.R | 16 +- R/request_make.R | 20 ++ R/roxygen.R | 18 +- R/schema_CellData.R | 13 + R/schema_GridRange.R | 14 +- R/schema_NamedRange.R | 2 R/schema_ProtectedRange.R | 12 - R/schema_Sheet.R | 7 - R/schema_SheetProperties.R | 1 R/schema_Spreadsheet.R | 12 + R/schemas.R | 12 + R/sheet_add.R | 30 ++-- R/sheet_append.R | 14 +- R/sheet_copy.R | 48 ++++-- R/sheet_freeze.R | 4 R/sheet_relocate.R | 24 ++- R/sheet_rename.R | 4 R/sheet_resize.R | 42 ++++-- R/sheet_write.R | 4 R/utils-cell-ranges.R | 18 ++ R/utils-sheet.R | 18 +- R/utils-ui.R | 24 ++- R/utils.R | 29 ++-- R/zzz.R | 1 README.md | 2 man/cell-specification.Rd | 6 man/googlesheets4-configuration.Rd | 2 man/gs4_auth.Rd | 4 man/gs4_create.Rd | 2 man/gs4_deauth.Rd | 4 man/gs4_examples.Rd | 2 man/gs4_find.Rd | 2 man/gs4_formula.Rd | 2 man/gs4_get.Rd | 2 man/gs4_scopes.Rd | 2 man/gs4_token.Rd | 2 man/range_autofit.Rd | 2 man/range_delete.Rd | 2 man/range_flood.Rd | 2 man/range_read.Rd | 2 man/range_read_cells.Rd | 2 man/range_speedread.Rd | 2 man/range_write.Rd | 2 man/request_make.Rd | 2 man/sheet_add.Rd | 2 man/sheet_append.Rd | 2 man/sheet_copy.Rd | 2 man/sheet_delete.Rd | 2 man/sheet_properties.Rd | 2 man/sheet_relocate.Rd | 2 man/sheet_rename.Rd | 2 man/sheet_resize.Rd | 2 man/sheet_write.Rd | 2 man/sheets_id.Rd | 10 - man/spread_sheet.Rd | 2 tests/spelling.R | 3 tests/testthat/helper.R | 9 - tests/testthat/test-gs4_auth.R | 6 tests/testthat/test-range_delete.R | 24 +-- tests/testthat/test-range_flood.R | 8 + tests/testthat/test-range_read.R | 52 ++++--- tests/testthat/test-range_read_cells.R | 6 tests/testthat/test-range_write.R | 89 ++++++++---- tests/testthat/test-schema_CellData.R | 9 - tests/testthat/test-schema_GridCoordinate.R | 20 ++ tests/testthat/test-schema_GridRange.R | 24 ++- tests/testthat/test-sheet_add.R | 14 +- tests/testthat/test-sheet_copy.R | 4 tests/testthat/test-sheet_resize.R | 12 + tests/testthat/test-sheet_write.R | 15 +- tests/testthat/test-utils-cell-ranges.R | 18 +- tests/testthat/test-utils.R | 8 - 98 files changed, 1116 insertions(+), 751 deletions(-)
Title: Computation of Generalized Linear Models with Misclassified
Covariates Using Side Information
Description: Estimates models that extend the standard GLM to take
misclassification into account. The models require side information from a secondary data set
on the misclassification process, i.e. some sort of misclassification
probabilities conditional on some common covariates.
A detailed description of the algorithm can be found in
Dlugosz, Mammen and Wilke (2015) <https://ftp.zew.de/pub/zew-docs/dp/dp15043.pdf>.
Author: Stephan Dlugosz [aut, cre]
Maintainer: Stephan Dlugosz <stephan.dlugosz@googlemail.com>
Diff between misclassGLM versions 0.3.5 dated 2023-11-19 and 0.3.6 dated 2025-09-03
DESCRIPTION | 18 +++++++---- MD5 | 21 +++++++------ R/main.R | 2 - R/misclassGLM.R |only R/misclassMLogit.R | 2 - man/boot.misclassGLM.Rd | 8 ++++- man/mfx.misclassGLM.Rd | 8 ++++- man/misclassGLM-package.Rd | 7 +++- man/misclassGLM.Rd | 67 ++++++++++++++++++++++++++++++++++++++++++-- man/misclassMlogit.Rd | 2 - man/predict.misclassGLM.Rd | 10 +++++- man/simulate_GLM_dataset.Rd | 21 +++++++++++++ 12 files changed, 138 insertions(+), 28 deletions(-)
Title: An Interface to Google's 'BigQuery' 'API'
Description: Easily talk to Google's 'BigQuery' database from R.
Author: Hadley Wickham [aut, cre] ,
Jennifer Bryan [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between bigrquery versions 1.5.1 dated 2024-03-14 and 1.6.0 dated 2025-09-03
bigrquery-1.5.1/bigrquery/man/bq_oauth_app.Rd |only bigrquery-1.6.0/bigrquery/DESCRIPTION | 22 bigrquery-1.6.0/bigrquery/MD5 | 98 ++-- bigrquery-1.6.0/bigrquery/NAMESPACE | 4 bigrquery-1.6.0/bigrquery/NEWS.md | 164 +++---- bigrquery-1.6.0/bigrquery/R/bq-auth.R | 69 -- bigrquery-1.6.0/bigrquery/R/bq-dataset.R | 8 bigrquery-1.6.0/bigrquery/R/bq-download.R | 161 ++++-- bigrquery-1.6.0/bigrquery/R/bq-field.R | 32 + bigrquery-1.6.0/bigrquery/R/bq-job.R | 31 - bigrquery-1.6.0/bigrquery/R/bq-perform.R | 233 ++++++---- bigrquery-1.6.0/bigrquery/R/bq-project.R | 7 bigrquery-1.6.0/bigrquery/R/bq-query.R | 29 - bigrquery-1.6.0/bigrquery/R/bq-refs.R | 170 ++++--- bigrquery-1.6.0/bigrquery/R/bq-request.R | 121 ++--- bigrquery-1.6.0/bigrquery/R/connections-page.R | 52 +- bigrquery-1.6.0/bigrquery/R/dbi-connection.R | 215 ++++++--- bigrquery-1.6.0/bigrquery/R/dbi-driver.R | 45 + bigrquery-1.6.0/bigrquery/R/dbi-result.R | 113 +++- bigrquery-1.6.0/bigrquery/R/dplyr.R | 198 +++++--- bigrquery-1.6.0/bigrquery/R/utils.R | 8 bigrquery-1.6.0/bigrquery/R/zzz.R | 6 bigrquery-1.6.0/bigrquery/README.md | 63 +- bigrquery-1.6.0/bigrquery/inst/rstudio/connections/BigQuery.R | 2 bigrquery-1.6.0/bigrquery/man/DBI.Rd | 11 bigrquery-1.6.0/bigrquery/man/api-dataset.Rd | 2 bigrquery-1.6.0/bigrquery/man/api-job.Rd | 2 bigrquery-1.6.0/bigrquery/man/api-perform.Rd | 56 +- bigrquery-1.6.0/bigrquery/man/api-project.Rd | 2 bigrquery-1.6.0/bigrquery/man/api-table.Rd | 4 bigrquery-1.6.0/bigrquery/man/bigquery.Rd | 6 bigrquery-1.6.0/bigrquery/man/bq_auth_configure.Rd | 5 bigrquery-1.6.0/bigrquery/man/bq_projects.Rd | 2 bigrquery-1.6.0/bigrquery/man/bq_query.Rd | 2 bigrquery-1.6.0/bigrquery/man/bq_table_download.Rd | 77 +-- bigrquery-1.6.0/bigrquery/man/bq_test_project.Rd | 2 bigrquery-1.6.0/bigrquery/man/collect.tbl_BigQueryConnection.Rd |only bigrquery-1.6.0/bigrquery/man/src_bigquery.Rd | 2 bigrquery-1.6.0/bigrquery/tests/testthat/_snaps/bq-download.md | 16 bigrquery-1.6.0/bigrquery/tests/testthat/test-bq-auth.R | 1 bigrquery-1.6.0/bigrquery/tests/testthat/test-bq-download.R | 192 +++++++- bigrquery-1.6.0/bigrquery/tests/testthat/test-bq-job.R | 5 bigrquery-1.6.0/bigrquery/tests/testthat/test-bq-parse.R | 91 +++ bigrquery-1.6.0/bigrquery/tests/testthat/test-bq-perform.R | 15 bigrquery-1.6.0/bigrquery/tests/testthat/test-bq-query.R | 1 bigrquery-1.6.0/bigrquery/tests/testthat/test-bq-request.R | 1 bigrquery-1.6.0/bigrquery/tests/testthat/test-bq-table.R | 22 bigrquery-1.6.0/bigrquery/tests/testthat/test-dbi-connection.R | 32 + bigrquery-1.6.0/bigrquery/tests/testthat/test-dbi-result.R | 1 bigrquery-1.6.0/bigrquery/tests/testthat/test-dplyr.R | 39 + bigrquery-1.6.0/bigrquery/tests/testthat/test-utils.R | 1 51 files changed, 1592 insertions(+), 849 deletions(-)
Title: Estimation of the Structural Topic Model
Description: The Structural Topic Model (STM) allows researchers
to estimate topic models with document-level covariates.
The package also includes tools for model selection, visualization,
and estimation of topic-covariate regressions. Methods developed in
Roberts et. al. (2014) <doi:10.1111/ajps.12103> and
Roberts et. al. (2016) <doi:10.1080/01621459.2016.1141684>. Vignette
is Roberts et. al. (2019) <doi:10.18637/jss.v091.i02>.
Author: Margaret Roberts [aut],
Brandon Stewart [aut, cre],
Dustin Tingley [aut],
Kenneth Benoit [ctb]
Maintainer: Brandon Stewart <bms4@princeton.edu>
Diff between stm versions 1.3.7 dated 2023-12-01 and 1.3.8 dated 2025-09-03
DESCRIPTION | 13 +++++++------ MD5 | 32 ++++++++++++++++---------------- R/STMinit.R | 1 + R/asSTMCorpus.R | 7 ++++--- R/jeffreyskappa.R | 2 ++ R/labelTopics.R | 6 +++--- R/stm-package.R | 5 ++--- R/stm.R | 40 ++++++++++++++++++++++++++-------------- R/topicLasso.R | 4 ++-- build/vignette.rds |binary inst/NEWS.Rd | 5 +++++ inst/doc/stmVignette.pdf |binary man/asSTMCorpus.Rd | 7 ++++--- man/labelTopics.Rd | 4 ++-- man/stm.Rd | 40 ++++++++++++++++++++++++++-------------- man/topicLasso.Rd | 4 ++-- tests/spelling.R | 4 +++- 17 files changed, 105 insertions(+), 69 deletions(-)
Title: In-Line Documentation for R
Description: Generate your Rd documentation, 'NAMESPACE' file, and
collation field using specially formatted comments. Writing
documentation in-line with code makes it easier to keep your
documentation up-to-date as your requirements change. 'roxygen2' is
inspired by the 'Doxygen' system for C++.
Author: Hadley Wickham [aut, cre, cph] ,
Peter Danenberg [aut, cph],
Gabor Csardi [aut],
Manuel Eugster [aut, cph],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between roxygen2 versions 7.3.2 dated 2024-06-28 and 7.3.3 dated 2025-09-03
DESCRIPTION | 17 - MD5 | 104 +++++----- NEWS.md | 285 ++++++++++++++-------------- R/markdown-link.R | 120 +++++++++++ R/markdown.R | 3 R/namespace.R | 7 R/object-package.R | 10 R/object-r6.R | 2 R/options.R | 2 R/rd-examples.R | 12 - R/rd-family.R | 3 R/roxygenize-setup.R | 12 - R/utils.R | 30 ++ build/vignette.rds |binary inst/doc/extending.html | 5 inst/doc/index-crossref.R | 6 inst/doc/index-crossref.html | 5 inst/doc/namespace.Rmd | 2 inst/doc/namespace.html | 9 inst/doc/rd-formatting.Rmd | 11 - inst/doc/rd-formatting.html | 14 + inst/doc/rd-other.R | 4 inst/doc/rd-other.Rmd | 4 inst/doc/rd-other.html | 12 - inst/doc/rd.html | 5 inst/doc/reuse.Rmd | 6 inst/doc/reuse.html | 15 - inst/doc/roxygen2.html | 5 man/roxygen2-package.Rd | 2 tests/testthat/_snaps/markdown-code.md | 2 tests/testthat/_snaps/markdown-link.md | 40 +++ tests/testthat/_snaps/namespace.md | 10 tests/testthat/_snaps/object-package.md | 25 +- tests/testthat/_snaps/object-r6.md | 2 tests/testthat/_snaps/rd-examples.md | 5 tests/testthat/_snaps/rd-include-rmd.md | 4 tests/testthat/_snaps/roxygenize-setup.md | 4 tests/testthat/_snaps/utils.md | 2 tests/testthat/test-markdown-code.R | 9 tests/testthat/test-markdown-link.R | 38 +++ tests/testthat/test-namespace.R | 6 tests/testthat/test-object-package.R | 11 - tests/testthat/test-rd-describe-in.R | 1 tests/testthat/test-rd-examples.R | 1 tests/testthat/test-rd-family.R | 16 + tests/testthat/test-rd-include-rmd.R | 7 tests/testthat/test-utils.R | 6 tests/testthat/testMdLinks |only tests/testthat/testMdLinks2 |only tests/testthat/testRawNamespace/DESCRIPTION | 2 vignettes/namespace.Rmd | 2 vignettes/rd-formatting.Rmd | 11 - vignettes/rd-other.Rmd | 4 vignettes/reuse.Rmd | 6 54 files changed, 630 insertions(+), 296 deletions(-)
Title: Intensive Care Unit Data with R
Description: Focused on (but not exclusive to) data sets hosted on PhysioNet
(<https://physionet.org>), 'ricu' provides utilities for download, setup
and access of intensive care unit (ICU) data sets. In addition to
functions for running arbitrary queries against available data sets, a
system for defining clinical concepts and encoding their representations
in tabular ICU data is presented.
Author: Nicolas Bennett [aut, cre],
Drago Plecko [aut],
Ida-Fong Ukor [aut]
Maintainer: Nicolas Bennett <r@nbenn.ch>
Diff between ricu versions 0.5.6 dated 2023-09-04 and 0.6.3 dated 2025-09-03
DESCRIPTION | 10 MD5 | 88 - NAMESPACE | 2 NEWS.md | 21 R/callback-itm.R | 13 R/data-env.R | 16 R/data-load.R | 11 R/data-utils.R | 32 R/setup-download.R | 2 R/tbl-base.R | 6 R/utils-file.R | 2 R/utils-misc.R | 2 R/utils-ts.R | 2 README.md | 14 build/vignette.rds |binary inst/doc/ricu.R | 50 inst/doc/ricu.pdf |binary inst/doc/start.R | 34 inst/doc/start.Rmd | 2 inst/doc/start.html | 12 inst/doc/uom.R | 114 - inst/doc/uom.html | 268 +++- inst/extdata/config/concept-dict.R | 307 ++++ inst/extdata/config/concept-dict.json | 664 +++++++++- inst/extdata/config/data-sources.R | 370 ++++- inst/extdata/config/data-sources.json | 650 +++++++++ man/change_id.Rd | 8 man/data_env.Rd | 16 man/data_utils.Rd | 3 man/figures/sofa-sep-3-1.pdf |binary man/figures/sofa-sep-3-1.png |binary man/figures/sofa-sep-3-1.sync-conflict-20231219-175827-LTNKDUS.pdf |only man/load_src.Rd | 10 man/tbl_reshape.Rd | 8 man/ts_utils.Rd | 2 tests/testthat/_snaps/utils-cli.md | 20 vignettes/jss-no.tex |only vignettes/jss_cache |only vignettes/jss_files |only vignettes/start.Rmd | 2 40 files changed, 2469 insertions(+), 292 deletions(-)
Title: Tabular Data Backed by Partitioned 'fst' Files
Description: Intended for larger-than-memory tabular data, 'prt' objects provide an interface to read row and/or column subsets into memory as data.table objects. Data queries, constructed as 'R' expressions, are evaluated using the non-standard evaluation framework provided by 'rlang' and file-backing is powered by the fast and efficient 'fst' package.
Author: Nicolas Bennett [aut, cre],
Drago Plecko [ctb]
Maintainer: Nicolas Bennett <r@nbenn.ch>
Diff between prt versions 0.2.0 dated 2023-04-09 and 0.2.1 dated 2025-09-03
DESCRIPTION | 8 - MD5 | 16 +-- NEWS.md | 4 R/format.R | 4 build/vignette.rds |binary inst/doc/prt.R | 4 inst/doc/prt.html | 267 +++++++++++++++++++++++++++-------------------------- man/formatting.Rd | 9 + man/subsetting.Rd | 2 9 files changed, 168 insertions(+), 146 deletions(-)
Title: Parallel Numerical Derivatives, Gradients, Jacobians, and
Hessians of Arbitrary Accuracy Order
Description: Numerical derivatives through finite-difference approximations
can be calculated using the 'pnd' package with parallel capabilities and
optimal step-size selection to improve accuracy. These functions facilitate
efficient computation of derivatives, gradients, Jacobians, and Hessians,
allowing for more evaluations to reduce the mathematical and machine errors.
Designed for compatibility with the 'numDeriv' package,
which has not received updates in several years, it introduces advanced features
such as computing derivatives of arbitrary order, improving
the accuracy of Hessian approximations by avoiding repeated differencing,
and parallelising slow functions on Windows, Mac, and Linux.
Author: Andrei Victorovitch Kostyrka [aut, cre]
Maintainer: Andrei Victorovitch Kostyrka <andrei.kostyrka@gmail.com>
Diff between pnd versions 0.1.0 dated 2025-05-20 and 0.1.1 dated 2025-09-03
pnd-0.1.0/pnd/man/plotTE.Rd |only pnd-0.1.1/pnd/DESCRIPTION | 6 pnd-0.1.1/pnd/MD5 | 105 pnd-0.1.1/pnd/NAMESPACE | 3 pnd-0.1.1/pnd/NEWS.md | 20 pnd-0.1.1/pnd/R/finite-diff.R | 4 pnd-0.1.1/pnd/R/gradient.R | 4 pnd-0.1.1/pnd/R/helpers.R | 5 pnd-0.1.1/pnd/R/methods.R | 74 pnd-0.1.1/pnd/R/step-plugin.R |only pnd-0.1.1/pnd/R/step-select.R | 1757 ---------------- pnd-0.1.1/pnd/R/stepCR.R |only pnd-0.1.1/pnd/R/stepDV.R |only pnd-0.1.1/pnd/R/stepK.R |only pnd-0.1.1/pnd/R/stepM.R |only pnd-0.1.1/pnd/R/stepSW.R |only pnd-0.1.1/pnd/R/zzz.R | 2 pnd-0.1.1/pnd/README.md | 4 pnd-0.1.1/pnd/build/partial.rdb |binary pnd-0.1.1/pnd/build/vignette.rds |binary pnd-0.1.1/pnd/inst/CITATION | 16 pnd-0.1.1/pnd/inst/REFERENCES.bib | 23 pnd-0.1.1/pnd/inst/doc/compatibility-with-numDeriv.html | 23 pnd-0.1.1/pnd/inst/doc/fast-and-accurate.R | 29 pnd-0.1.1/pnd/inst/doc/fast-and-accurate.Rmd | 51 pnd-0.1.1/pnd/inst/doc/fast-and-accurate.html | 192 + pnd-0.1.1/pnd/inst/doc/step-size-selection.R | 76 pnd-0.1.1/pnd/inst/doc/step-size-selection.Rmd | 131 + pnd-0.1.1/pnd/inst/doc/step-size-selection.html | 213 + pnd-0.1.1/pnd/inst/figures |only pnd-0.1.1/pnd/man/GenD.Rd | 2 pnd-0.1.1/pnd/man/gradstep.Rd | 12 pnd-0.1.1/pnd/man/plot.stepsize.Rd |only pnd-0.1.1/pnd/man/step.CR.Rd | 56 pnd-0.1.1/pnd/man/step.DV.Rd | 13 pnd-0.1.1/pnd/man/step.K.Rd | 33 pnd-0.1.1/pnd/man/step.M.Rd | 46 pnd-0.1.1/pnd/man/step.SW.Rd | 5 pnd-0.1.1/pnd/man/step.plugin.Rd | 5 pnd-0.1.1/pnd/man/stepx.Rd | 3 pnd-0.1.1/pnd/tests/testthat/Rplots.pdf |binary pnd-0.1.1/pnd/tests/testthat/test-GenD.R | 2 pnd-0.1.1/pnd/tests/testthat/test-Grad.R | 22 pnd-0.1.1/pnd/tests/testthat/test-Hessian.R | 18 pnd-0.1.1/pnd/tests/testthat/test-Jacobian.R | 37 pnd-0.1.1/pnd/tests/testthat/test-checkDimensions.R | 16 pnd-0.1.1/pnd/tests/testthat/test-fdCoef.R | 38 pnd-0.1.1/pnd/tests/testthat/test-gradstep.R | 13 pnd-0.1.1/pnd/tests/testthat/test-helpers.R | 18 pnd-0.1.1/pnd/tests/testthat/test-methods.R | 12 pnd-0.1.1/pnd/tests/testthat/test-step.CR.R | 40 pnd-0.1.1/pnd/tests/testthat/test-step.DV.R | 29 pnd-0.1.1/pnd/tests/testthat/test-step.K.R | 30 pnd-0.1.1/pnd/tests/testthat/test-step.M.R | 33 pnd-0.1.1/pnd/tests/testthat/test-step.SW.R | 19 pnd-0.1.1/pnd/tests/testthat/test-step.plugin.R | 14 pnd-0.1.1/pnd/vignettes/fast-and-accurate.Rmd | 51 pnd-0.1.1/pnd/vignettes/step-size-selection.Rmd | 131 + 58 files changed, 1309 insertions(+), 2127 deletions(-)
Title: Creation of in-Text Summary Table
Description: Creation of tables of summary statistics or counts for clinical data (for 'TLFs').
These tables can be exported as in-text table (with the 'flextable' package) for a Clinical Study Report
(Word format) or a 'topline' presentation (PowerPoint format),
or as interactive table (with the 'DT' package) to an html document for clinical data review.
Author: Laure Cougnaud [aut, cre],
Michela Pasetto [aut],
Margaux Faes [rev] ,
Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>
Diff between inTextSummaryTable versions 3.3.3 dated 2024-06-12 and 3.3.4 dated 2025-09-03
DESCRIPTION | 10 MD5 | 42 R/subjectProfileSummaryPlot.R | 10 R/summaryTable-combine.R | 2 build/vignette.rds |binary inst/NEWS | 4 inst/doc/inTextSummaryTable-advanced.R | 8 inst/doc/inTextSummaryTable-advanced.html | 395 +++++--- inst/doc/inTextSummaryTable-aesthetics.R | 6 inst/doc/inTextSummaryTable-aesthetics.html | 356 ++++---- inst/doc/inTextSummaryTable-createTables.R | 24 inst/doc/inTextSummaryTable-createTables.html | 1060 +++++++++++++++--------- inst/doc/inTextSummaryTable-exportTables.R | 106 +- inst/doc/inTextSummaryTable-exportTables.html | 686 ++++++++++----- inst/doc/inTextSummaryTable-introduction.R | 24 inst/doc/inTextSummaryTable-introduction.html | 298 ++++-- inst/doc/inTextSummaryTable-standardTables.R | 108 +- inst/doc/inTextSummaryTable-standardTables.html | 343 ++++--- inst/doc/inTextSummaryTable-visualization.R | 50 - inst/doc/inTextSummaryTable-visualization.html | 437 ++++++--- man/inTextSummaryTable-stats.Rd | 2 man/subjectProfileSummaryPlot.Rd | 8 22 files changed, 2435 insertions(+), 1544 deletions(-)
More information about inTextSummaryTable at CRAN
Permanent link
Title: Chat with Large Language Models
Description: Chat with large language models from a range of providers
including 'Claude' <https://claude.ai>, 'OpenAI'
<https://chatgpt.com>, and more. Supports streaming, asynchronous
calls, tool calling, and structured data extraction.
Author: Hadley Wickham [aut, cre] ,
Joe Cheng [aut],
Aaron Jacobs [aut],
Garrick Aden-Buie [aut] ,
Barret Schloerke [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between ellmer versions 0.3.1 dated 2025-08-24 and 0.3.2 dated 2025-09-03
ellmer-0.3.1/ellmer/inst/_vcr/content_image_url.yml |only ellmer-0.3.2/ellmer/DESCRIPTION | 6 - ellmer-0.3.2/ellmer/MD5 | 75 ++++++-------- ellmer-0.3.2/ellmer/NEWS.md | 10 + ellmer-0.3.2/ellmer/R/chat.R | 2 ellmer-0.3.2/ellmer/R/content-image.R | 4 ellmer-0.3.2/ellmer/R/params.R | 13 ++ ellmer-0.3.2/ellmer/R/provider-any.R | 7 + ellmer-0.3.2/ellmer/R/provider-aws.R | 35 +++++- ellmer-0.3.2/ellmer/R/provider-azure.R | 28 +++-- ellmer-0.3.2/ellmer/R/provider-databricks.R | 25 ++++ ellmer-0.3.2/ellmer/R/provider-deepseek.R | 21 +++ ellmer-0.3.2/ellmer/R/provider-github.R | 6 + ellmer-0.3.2/ellmer/R/provider-groq.R | 6 + ellmer-0.3.2/ellmer/R/provider-ollama.R | 21 +++ ellmer-0.3.2/ellmer/R/provider-openai.R | 3 ellmer-0.3.2/ellmer/R/provider-openrouter.R | 23 ++++ ellmer-0.3.2/ellmer/R/provider-perplexity.R | 41 ++++++- ellmer-0.3.2/ellmer/R/provider-vllm.R | 6 + ellmer-0.3.2/ellmer/R/tools-def-auto.R | 2 ellmer-0.3.2/ellmer/R/types.R | 2 ellmer-0.3.2/ellmer/inst/tool_prompt.md | 12 +- ellmer-0.3.2/ellmer/man/Chat.Rd | 2 ellmer-0.3.2/ellmer/man/chat_aws_bedrock.Rd | 3 ellmer-0.3.2/ellmer/man/chat_azure_openai.Rd | 11 +- ellmer-0.3.2/ellmer/man/chat_databricks.Rd | 3 ellmer-0.3.2/ellmer/man/chat_deepseek.Rd | 3 ellmer-0.3.2/ellmer/man/chat_github.Rd | 3 ellmer-0.3.2/ellmer/man/chat_groq.Rd | 3 ellmer-0.3.2/ellmer/man/chat_ollama.Rd | 3 ellmer-0.3.2/ellmer/man/chat_openrouter.Rd | 3 ellmer-0.3.2/ellmer/man/chat_perplexity.Rd | 3 ellmer-0.3.2/ellmer/man/chat_vllm.Rd | 3 ellmer-0.3.2/ellmer/man/content_image_url.Rd | 4 ellmer-0.3.2/ellmer/man/create_tool_def.Rd | 2 ellmer-0.3.2/ellmer/man/type_boolean.Rd | 2 ellmer-0.3.2/ellmer/tests/testthat/_snaps/provider-any.md | 8 + ellmer-0.3.2/ellmer/tests/testthat/test-provider-any.R | 20 +++ ellmer-0.3.2/ellmer/tests/testthat/test-provider-aws.R | 10 + 39 files changed, 349 insertions(+), 85 deletions(-)
Title: Karl Broman's R Code
Description: Miscellaneous R functions, including functions related to
graphics (mostly for base graphics), permutation tests, running
mean/median, and general utilities.
Author: Karl W Broman [aut, cre] ,
Aimee Teo Broman [ctb]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between broman versions 0.86 dated 2025-06-08 and 0.88 dated 2025-09-03
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 7 +++++++ R/jiggle.R | 2 +- R/pastedot.R | 33 ++++++++++++++++++++++----------- data/numbers-cap.RData |binary data/numbers.RData |binary man/paste..Rd | 4 ++-- man/paste00.Rd | 20 ++++++++++++++------ 9 files changed, 58 insertions(+), 32 deletions(-)
Title: Treatment Switching
Description: Implements rank-preserving structural failure time model (RPSFTM), iterative parameter estimation (IPE), inverse probability of censoring weights (IPCW), and two-stage estimation (TSE) methods for treatment switching in randomized clinical trials.
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between trtswitch versions 0.1.8 dated 2025-07-12 and 0.1.9 dated 2025-09-03
DESCRIPTION | 12 MD5 | 134 +- NEWS.md | 20 R/RcppExports.R | 80 + R/ipcw.R | 906 +++++++++---------- R/ipe.R | 64 - R/msm.R | 853 +++++++++--------- R/residuals_liferegr.R | 27 R/residuals_phregr.R | 2 R/rpsftm.R | 48 - R/survfit_phregr.R | 2 R/tsegest.R | 116 +- R/tsesimp.R | 86 - inst/doc/ipcw.R | 29 inst/doc/ipcw.Rmd | 343 +++---- inst/doc/ipcw.html | 192 ++-- inst/doc/ipe.R | 8 inst/doc/ipe.Rmd | 12 inst/doc/ipe.html | 12 inst/doc/msm.R | 11 inst/doc/msm.Rmd | 214 ++-- inst/doc/msm.html | 101 +- inst/doc/rpsftm.R | 2 inst/doc/rpsftm.Rmd | 2 inst/doc/rpsftm.html | 2 inst/doc/tsegest.R | 11 inst/doc/tsegest.Rmd | 25 inst/doc/tsegest.html | 90 + inst/doc/tsesimp.R | 2 inst/doc/tsesimp.Rmd | 6 inst/doc/tsesimp.html | 9 man/ipcw.Rd | 34 man/ipe.Rd | 3 man/msm.Rd | 15 man/residuals_liferegr.Rd | 23 man/residuals_phregr.Rd | 2 man/rpsftm.Rd | 3 man/survfit_phregr.Rd | 2 man/survsplit.Rd | 2 man/tsegest.Rd | 16 man/tsegestsim.Rd | 2 man/tsesimp.Rd | 3 man/tssim.Rd | 69 + src/RcppExports.cpp | 61 + src/ipcw.cpp | 572 ++++++++---- src/ipe.cpp | 761 +++++++++------- src/logistic_regression.cpp | 43 src/msm.cpp | 567 ++++++++--- src/rpsftm.cpp | 715 +++++++++------ src/survival_analysis.cpp | 1985 +++++++++++++++++++++--------------------- src/tsegest.cpp | 1070 ++++++++++++++-------- src/tsegestsim.cpp | 37 src/tsesimp.cpp | 706 +++++++++----- src/tssim.cpp | 173 ++- src/utilities.cpp | 169 +++ src/utilities.h | 20 tests/testthat/test-ipcw.R | 303 +++--- tests/testthat/test-ipe.R | 4 tests/testthat/test-msm.R | 177 +-- tests/testthat/test-rpsftm.R | 13 tests/testthat/test-tsegest.R | 82 - tests/testthat/test-tsesimp.R | 2 vignettes/ipcw.Rmd | 343 +++---- vignettes/ipe.Rmd | 12 vignettes/msm.Rmd | 214 ++-- vignettes/rpsftm.Rmd | 2 vignettes/tsegest.Rmd | 25 vignettes/tsesimp.Rmd | 6 68 files changed, 6794 insertions(+), 4863 deletions(-)
Title: Letter Value 'Boxplots'
Description: Implements the letter value 'boxplot' which extends the
standard 'boxplot' to deal with both larger and smaller number of data
points by dynamically selecting the appropriate number of letter
values to display.
Author: Hadley Wickham [aut, cre],
Heike Hofmann [aut]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between lvplot versions 0.2.1 dated 2022-09-25 and 0.2.2 dated 2025-09-03
DESCRIPTION | 11 +++++---- MD5 | 14 +++++------ NAMESPACE | 2 + NEWS.md | 9 +++---- R/geom-lv.r | 10 +++++--- R/lvbagplot.R | 8 ++---- man/geom_lv.Rd | 59 ++++++++++++++++++++++++++++++++++++++------------ man/lvplot-package.Rd | 8 ++++++ 8 files changed, 83 insertions(+), 38 deletions(-)
Title: 'DBI' Compliant Database Access Using 'ADBC'
Description: In order to make Arrow Database Connectivity ('ADBC' <https://arrow.apache.org/adbc/>) accessible from R, an interface compliant with the 'DBI' package is provided, using driver back-ends that are implemented in the 'adbcdrivermanager' framework. This enables interacting with database systems using the Arrow data format, thereby offering an efficient alternative to 'ODBC' for analytical applications.
Author: Nicolas Bennett [aut, cre],
Voltron Data [fnd]
Maintainer: Nicolas Bennett <nicolas@cynkra.com>
Diff between adbi versions 0.1.1 dated 2024-01-25 and 0.1.2 dated 2025-09-03
adbi-0.1.1/adbi/R/nanoarrow.R |only adbi-0.1.2/adbi/DESCRIPTION | 12 +- adbi-0.1.2/adbi/MD5 | 59 ++++------ adbi-0.1.2/adbi/NAMESPACE | 3 adbi-0.1.2/adbi/NEWS.md | 4 adbi-0.1.2/adbi/R/AdbiConnection.R | 4 adbi-0.1.2/adbi/R/AdbiDriver.R | 4 adbi-0.1.2/adbi/R/AdbiResult.R | 2 adbi-0.1.2/adbi/R/AdbiResultArrow.R | 4 adbi-0.1.2/adbi/R/dbBegin_AdbiConnection.R | 2 adbi-0.1.2/adbi/R/dbClearResult_AdbiResult.R | 1 adbi-0.1.2/adbi/R/dbClearResult_AdbiResultArrow.R | 1 adbi-0.1.2/adbi/R/dbConnect_AdbiDriver.R | 11 + adbi-0.1.2/adbi/R/dbDisconnect_AdbiConnection.R | 3 adbi-0.1.2/adbi/R/dbFetch_AdbiResult.R | 19 +-- adbi-0.1.2/adbi/R/dbIsValid_AdbiConnection.R | 2 adbi-0.1.2/adbi/R/dbIsValid_AdbiDriver.R | 2 adbi-0.1.2/adbi/R/dbIsValid_AdbiResult.R | 3 adbi-0.1.2/adbi/R/dbIsValid_AdbiResultArrow.R | 3 adbi-0.1.2/adbi/R/dbQuoteIdentifier_AdbiConnection_character.R | 10 + adbi-0.1.2/adbi/R/dbQuoteString_AdbiConnection_character.R | 8 + adbi-0.1.2/adbi/R/dbRemoveTable_AdbiConnection_character.R | 2 adbi-0.1.2/adbi/R/dbSendQuery_AdbiConnection_character.R | 11 + adbi-0.1.2/adbi/man/AdbiConnection-class.Rd | 23 ++- adbi-0.1.2/adbi/man/AdbiDriver-class.Rd | 8 - adbi-0.1.2/adbi/man/AdbiResult-class.Rd | 10 - adbi-0.1.2/adbi/man/AdbiResultArrow-class.Rd | 12 +- adbi-0.1.2/adbi/man/dbConnect.Rd | 15 +- adbi-0.1.2/adbi/man/dbFetch.Rd | 21 +-- adbi-0.1.2/adbi/man/dbSendQuery.Rd | 12 +- adbi-0.1.2/adbi/tests/testthat/test-DBItest.R | 6 - 31 files changed, 162 insertions(+), 115 deletions(-)
Title: Inference for Spatiotemporal Partially Observed Markov Processes
Description: Inference on panel data using spatiotemporal partially-observed Markov process (SpatPOMP) models. The 'spatPomp' package extends 'pomp' to include algorithms taking advantage of the spatial structure in order to assist with handling high dimensional processes. See Asfaw et al. (2024) <doi:10.48550/arXiv.2101.01157> for further description of the package.
Author: Kidus Asfaw [aut],
Edward Ionides [cre, aut],
Aaron A. King [aut],
Allister Ho [ctb],
Joonha Park [ctb],
Jesse Wheeler [ctb],
Jifan Li [ctb],
Ning Ning [ctb],
Haogao Gu [ctb],
Kunyang He [ctb],
Gottfried Julian [ctb]
Maintainer: Edward Ionides <ionides@umich.edu>
Diff between spatPomp versions 1.0.0 dated 2024-11-14 and 1.1.0 dated 2025-09-03
DESCRIPTION | 16 ++++++++++------ MD5 | 30 +++++++++++++++--------------- R/bpfilter.R | 30 ++++++++++++++++++++++++------ R/he10.R | 6 ++++-- R/spatPomp.R | 4 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 12 ++++++------ inst/doc/ibpf.pdf |binary inst/doc/tutorial.pdf |binary man/he10.Rd | 2 +- man/ibpf.Rd | 2 +- man/ienkf.Rd | 2 +- man/igirf.Rd | 2 +- man/iubf.Rd | 5 +++-- tests/bm.Rout.save | 6 +++--- 16 files changed, 71 insertions(+), 46 deletions(-)
Title: Mediation Analysis with Missing Data Using Bootstrap
Description: Four methods for mediation analysis with missing data: Listwise deletion, Pairwise deletion, Multiple imputation, and Two Stage Maximum Likelihood algorithm. For MI and TS-ML, auxiliary variables can be included. Bootstrap confidence intervals for mediation effects are obtained. The robust method is also implemented for TS-ML. Since version 1.4, bmem adds the capability to conduct power analysis for mediation models. Details about the methods used can be found in these articles. Zhang and Wang (2003) <doi:10.1007/s11336-012-9301-5>. Zhang (2014) <doi:10.3758/s13428-013-0424-0>.
Author: Zhiyong Zhang [aut, cre],
Lijuan Wang [aut]
Maintainer: Zhiyong Zhang <zhiyongzhang@nd.edu>
Diff between bmem versions 2.1 dated 2023-08-26 and 2.2 dated 2025-09-03
DESCRIPTION | 18 +++++++++++++----- MD5 | 42 +++++++++++++++++++++--------------------- man/bmem.Rd | 4 ++-- man/bmem.bs.Rd | 2 +- man/bmem.em.Rd | 2 +- man/bmem.em.boot.Rd | 2 +- man/bmem.em.jack.Rd | 2 +- man/bmem.list.Rd | 2 +- man/bmem.list.boot.Rd | 2 +- man/bmem.list.jack.Rd | 2 +- man/bmem.mi.Rd | 2 +- man/bmem.mi.boot.Rd | 2 +- man/bmem.mi.jack.Rd | 2 +- man/bmem.pair.Rd | 2 +- man/bmem.pair.boot.Rd | 2 +- man/bmem.pair.jack.Rd | 2 +- man/bmem.sobel.Rd | 2 +- man/popPar.Rd | 2 +- man/power.basic.Rd | 2 +- man/power.boot.Rd | 2 +- man/power.curve.Rd | 2 +- man/summary.power.Rd | 2 +- 22 files changed, 55 insertions(+), 47 deletions(-)
Title: Satellite Image Time Series Analysis for Earth Observation Data
Cubes
Description: An end-to-end toolkit for land use and land cover classification
using big Earth observation data. Builds satellite image data cubes from cloud collections.
Supports visualization methods for images and time series and
smoothing filters for dealing with noisy time series.
Enables merging of multi-source imagery (SAR, optical, DEM).
Includes functions for quality assessment of training samples using self-organized maps and
to reduce training samples imbalance. Provides machine learning algorithms including support vector machines,
random forests, extreme gradient boosting, multi-layer perceptrons,
temporal convolution neural networks, and temporal attention encoders.
Performs efficient classification of big Earth observation data cubes and includes
functions for post-classification smoothing based on Bayesian inference.
Enables best practices for estimating area and assessing accuracy of land change.
Includes object-based spatio-temporal segmentation for space-time OBIA.
Minimum recomme [...truncated...]
Author: Rolf Simoes [aut],
Gilberto Camara [aut, cre, ths],
Felipe Souza [aut],
Felipe Carlos [aut],
Lorena Santos [ctb],
Charlotte Pelletier [ctb],
Estefania Pizarro [ctb],
Karine Ferreira [ctb, ths],
Alber Sanchez [ctb],
Alexandre Assuncao [ctb],
Daniel Fa [...truncated...]
Maintainer: Gilberto Camara <gilberto.camara.inpe@gmail.com>
Diff between sits versions 1.5.3 dated 2025-07-23 and 1.5.3-1 dated 2025-09-03
sits-1.5.3-1/sits/DESCRIPTION | 54 +- sits-1.5.3-1/sits/MD5 | 240 +++++------ sits-1.5.3-1/sits/NAMESPACE | 3 sits-1.5.3-1/sits/NEWS.md | 12 sits-1.5.3-1/sits/R/api_accuracy.R | 3 sits-1.5.3-1/sits/R/api_check.R | 23 - sits-1.5.3-1/sits/R/api_cluster.R | 4 sits-1.5.3-1/sits/R/api_crop.R | 18 sits-1.5.3-1/sits/R/api_cube.R | 130 +++++ sits-1.5.3-1/sits/R/api_download.R | 5 sits-1.5.3-1/sits/R/api_gdal.R | 2 sits-1.5.3-1/sits/R/api_gdalcubes.R | 4 sits-1.5.3-1/sits/R/api_kohonen.R | 12 sits-1.5.3-1/sits/R/api_message.R | 9 sits-1.5.3-1/sits/R/api_mosaic.R | 26 - sits-1.5.3-1/sits/R/api_reclassify.R | 5 sits-1.5.3-1/sits/R/api_regularize.R | 18 sits-1.5.3-1/sits/R/api_source_local.R | 4 sits-1.5.3-1/sits/R/api_texture.R | 8 sits-1.5.3-1/sits/R/api_torch.R | 59 ++ sits-1.5.3-1/sits/R/api_torch_psetae.R | 225 ++++++++-- sits-1.5.3-1/sits/R/sits_accuracy.R | 4 sits-1.5.3-1/sits/R/sits_apply.R | 7 sits-1.5.3-1/sits/R/sits_bayts.R | 6 sits-1.5.3-1/sits/R/sits_classify.R | 7 sits-1.5.3-1/sits/R/sits_cluster.R | 20 sits-1.5.3-1/sits/R/sits_cube_copy.R | 19 sits-1.5.3-1/sits/R/sits_cube_local.R | 3 sits-1.5.3-1/sits/R/sits_dtw.R | 4 sits-1.5.3-1/sits/R/sits_filters.R | 4 sits-1.5.3-1/sits/R/sits_geo_dist.R | 2 sits-1.5.3-1/sits/R/sits_get_data.R | 6 sits-1.5.3-1/sits/R/sits_grid_systems.R | 4 sits-1.5.3-1/sits/R/sits_label_classification.R | 2 sits-1.5.3-1/sits/R/sits_labels.R | 28 - sits-1.5.3-1/sits/R/sits_lighttae.R | 39 + sits-1.5.3-1/sits/R/sits_lstm_fcn.R |only sits-1.5.3-1/sits/R/sits_machine_learning.R | 4 sits-1.5.3-1/sits/R/sits_mixture_model.R | 2 sits-1.5.3-1/sits/R/sits_mlp.R | 12 sits-1.5.3-1/sits/R/sits_mosaic.R | 24 - sits-1.5.3-1/sits/R/sits_patterns.R | 10 sits-1.5.3-1/sits/R/sits_plot.R | 52 +- sits-1.5.3-1/sits/R/sits_predictors.R | 12 sits-1.5.3-1/sits/R/sits_reclassify.R | 2 sits-1.5.3-1/sits/R/sits_reduce_imbalance.R | 7 sits-1.5.3-1/sits/R/sits_regularize.R | 9 sits-1.5.3-1/sits/R/sits_resnet.R | 22 - sits-1.5.3-1/sits/R/sits_select.R | 2 sits-1.5.3-1/sits/R/sits_smooth.R | 4 sits-1.5.3-1/sits/R/sits_som.R | 2 sits-1.5.3-1/sits/R/sits_tae.R | 30 + sits-1.5.3-1/sits/R/sits_tempcnn.R | 21 sits-1.5.3-1/sits/R/sits_texture.R | 12 sits-1.5.3-1/sits/R/sits_train.R | 22 - sits-1.5.3-1/sits/R/sits_validate.R | 3 sits-1.5.3-1/sits/R/sits_variance.R | 3 sits-1.5.3-1/sits/R/sits_xlsx.R | 3 sits-1.5.3-1/sits/R/zzz.R | 8 sits-1.5.3-1/sits/build |only sits-1.5.3-1/sits/inst/extdata/config_messages.yml | 1 sits-1.5.3-1/sits/inst/extdata/sources/config_source_mpc.yml | 2 sits-1.5.3-1/sits/man/plot.class_cube.Rd | 7 sits-1.5.3-1/sits/man/plot.class_vector_cube.Rd | 2 sits-1.5.3-1/sits/man/plot.geo_distances.Rd | 6 sits-1.5.3-1/sits/man/plot.probs_cube.Rd | 19 sits-1.5.3-1/sits/man/plot.raster_cube.Rd | 2 sits-1.5.3-1/sits/man/plot.rfor_model.Rd | 2 sits-1.5.3-1/sits/man/plot.sits_accuracy.Rd | 4 sits-1.5.3-1/sits/man/plot.som_evaluate_cluster.Rd | 4 sits-1.5.3-1/sits/man/plot.som_map.Rd | 4 sits-1.5.3-1/sits/man/plot.torch_model.Rd | 3 sits-1.5.3-1/sits/man/plot.xgb_model.Rd | 4 sits-1.5.3-1/sits/man/sits-package.Rd | 1 sits-1.5.3-1/sits/man/sits_apply.Rd | 7 sits-1.5.3-1/sits/man/sits_classify.Rd | 5 sits-1.5.3-1/sits/man/sits_classify.segs_cube.Rd | 2 sits-1.5.3-1/sits/man/sits_cluster_clean.Rd | 4 sits-1.5.3-1/sits/man/sits_cluster_dendro.Rd | 14 sits-1.5.3-1/sits/man/sits_cluster_frequency.Rd | 2 sits-1.5.3-1/sits/man/sits_cube.results_cube.Rd | 3 sits-1.5.3-1/sits/man/sits_cube_copy.Rd | 18 sits-1.5.3-1/sits/man/sits_filter.Rd | 3 sits-1.5.3-1/sits/man/sits_geo_dist.Rd | 2 sits-1.5.3-1/sits/man/sits_get_data.Rd | 2 sits-1.5.3-1/sits/man/sits_get_data.sf.Rd | 2 sits-1.5.3-1/sits/man/sits_kfold_validate.Rd | 3 sits-1.5.3-1/sits/man/sits_label_classification.Rd | 2 sits-1.5.3-1/sits/man/sits_labels-set-.class_cube.Rd |only sits-1.5.3-1/sits/man/sits_labels-set-.default.Rd |only sits-1.5.3-1/sits/man/sits_labels-set-.probs_cube.Rd |only sits-1.5.3-1/sits/man/sits_labels-set-.sits.Rd |only sits-1.5.3-1/sits/man/sits_labels-set.Rd |only sits-1.5.3-1/sits/man/sits_lighttae.Rd | 29 + sits-1.5.3-1/sits/man/sits_lstm_fcn.Rd |only sits-1.5.3-1/sits/man/sits_mixture_model.Rd | 2 sits-1.5.3-1/sits/man/sits_mlp.Rd | 3 sits-1.5.3-1/sits/man/sits_mosaic.Rd | 21 sits-1.5.3-1/sits/man/sits_patterns.Rd | 9 sits-1.5.3-1/sits/man/sits_pred_features.Rd | 4 sits-1.5.3-1/sits/man/sits_pred_normalize.Rd | 4 sits-1.5.3-1/sits/man/sits_pred_sample.Rd | 4 sits-1.5.3-1/sits/man/sits_reduce_imbalance.Rd | 7 sits-1.5.3-1/sits/man/sits_regularize.Rd | 2 sits-1.5.3-1/sits/man/sits_resnet.Rd | 13 sits-1.5.3-1/sits/man/sits_roi_to_mgrs.Rd | 2 sits-1.5.3-1/sits/man/sits_roi_to_tiles.Rd | 2 sits-1.5.3-1/sits/man/sits_smooth.Rd | 4 sits-1.5.3-1/sits/man/sits_som_map.Rd | 2 sits-1.5.3-1/sits/man/sits_stats.Rd | 4 sits-1.5.3-1/sits/man/sits_svm.Rd | 2 sits-1.5.3-1/sits/man/sits_tae.Rd | 19 sits-1.5.3-1/sits/man/sits_tempcnn.Rd | 12 sits-1.5.3-1/sits/man/sits_texture.Rd | 12 sits-1.5.3-1/sits/man/sits_to_xlsx.Rd | 4 sits-1.5.3-1/sits/man/sits_train.Rd | 22 - sits-1.5.3-1/sits/man/sits_variance.Rd | 4 sits-1.5.3-1/sits/man/sits_xgboost.Rd | 2 sits-1.5.3-1/sits/tests/testthat/test-accuracy.R | 2 sits-1.5.3-1/sits/tests/testthat/test-color.R | 12 sits-1.5.3-1/sits/tests/testthat/test-merge.R | 21 sits-1.5.3-1/sits/tests/testthat/test-ml.R | 58 ++ sits-1.5.3-1/sits/tests/testthat/test-mosaic.R | 33 + sits-1.5.3/sits/inst/extdata/markdown |only sits-1.5.3/sits/inst/extdata/sticker |only sits-1.5.3/sits/man/tick-sits_labels-set-tick.Rd |only 126 files changed, 1168 insertions(+), 562 deletions(-)
Title: Run Multiverse Style Analyses
Description: Run the same analysis over a range of arbitrary data processing
decisions. 'multitool' provides an interface for creating alternative
analysis pipelines and turning them into a grid of all possible pipelines.
Using this grid as a blueprint, you can model your data across all possible
pipelines and summarize the results.
Author: Ethan Young [aut, cre, cph] ,
Stefan Vermeent [aut]
Maintainer: Ethan Young <young.ethan.scott@gmail.com>
Diff between multitool versions 0.1.4 dated 2024-02-08 and 0.1.5 dated 2025-09-03
multitool-0.1.4/multitool/man/show_code_filter.Rd |only multitool-0.1.5/multitool/DESCRIPTION | 24 multitool-0.1.5/multitool/MD5 | 75 - multitool-0.1.5/multitool/NAMESPACE | 4 multitool-0.1.5/multitool/NEWS.md | 12 multitool-0.1.5/multitool/R/describe-pipeline.R | 107 + multitool-0.1.5/multitool/R/globals.R | 12 multitool-0.1.5/multitool/R/grid-pipeline.R | 121 + multitool-0.1.5/multitool/R/inspect-decisions.R | 2 multitool-0.1.5/multitool/R/run-multiverse.R | 200 ++- multitool-0.1.5/multitool/R/show-pipelines.R | 479 ++----- multitool-0.1.5/multitool/R/unpack-multiverse.R | 57 multitool-0.1.5/multitool/R/utils.R | 657 +++++++--- multitool-0.1.5/multitool/R/visualize-pipeline.R | 167 +- multitool-0.1.5/multitool/README.md | 130 + multitool-0.1.5/multitool/build/vignette.rds |binary multitool-0.1.5/multitool/inst/doc/create-your-blueprint.R | 30 multitool-0.1.5/multitool/inst/doc/create-your-blueprint.Rmd | 2 multitool-0.1.5/multitool/inst/doc/create-your-blueprint.html | 193 +- multitool-0.1.5/multitool/inst/doc/multitool-nomenclature.html | 24 multitool-0.1.5/multitool/inst/doc/run-your-pipeline.R | 6 multitool-0.1.5/multitool/inst/doc/run-your-pipeline.Rmd | 8 multitool-0.1.5/multitool/inst/doc/run-your-pipeline.html | 328 ++-- multitool-0.1.5/multitool/inst/doc/validate-your-blueprint.R | 4 multitool-0.1.5/multitool/inst/doc/validate-your-blueprint.Rmd | 4 multitool-0.1.5/multitool/inst/doc/validate-your-blueprint.html | 14 multitool-0.1.5/multitool/man/add_model.Rd | 5 multitool-0.1.5/multitool/man/add_subgroups.Rd |only multitool-0.1.5/multitool/man/condense.Rd | 4 multitool-0.1.5/multitool/man/detect_n_subgroups.Rd |only multitool-0.1.5/multitool/man/reveal_corrs.Rd | 3 multitool-0.1.5/multitool/man/reveal_model_parameters.Rd | 4 multitool-0.1.5/multitool/man/reveal_reliabilities.Rd | 3 multitool-0.1.5/multitool/man/reveal_summary_stats.Rd | 3 multitool-0.1.5/multitool/man/run_descriptives.Rd | 16 multitool-0.1.5/multitool/man/run_multiverse.Rd | 11 multitool-0.1.5/multitool/man/run_multiverse_furrr.Rd |only multitool-0.1.5/multitool/man/show_code_subgroups.Rd |only multitool-0.1.5/multitool/vignettes/create-your-blueprint.Rmd | 2 multitool-0.1.5/multitool/vignettes/run-your-pipeline.Rmd | 8 multitool-0.1.5/multitool/vignettes/validate-your-blueprint.Rmd | 4 41 files changed, 1686 insertions(+), 1037 deletions(-)
Title: Quickly Create Elegant Regression Results Tables and Plots when
Modelling
Description: Generate regression results tables and plots in final
format for publication. Explore models and export directly to PDF
and 'Word' using 'RMarkdown'.
Author: Ewen Harrison [aut, cre],
Tom Drake [aut],
Riinu Pius [aut]
Maintainer: Ewen Harrison <ewen.harrison@ed.ac.uk>
Diff between finalfit versions 1.0.8 dated 2024-07-24 and 1.1.0 dated 2025-09-03
DESCRIPTION | 14 MD5 | 84 +- NEWS.md | 33 R/coefficient_plot.R | 18 R/finalfit_internal_functions.R | 2 R/finalfit_package.R | 4 R/fit2df.R | 2 R/hr_plot.R | 16 R/missing_pattern.R | 2 R/or_plot.R | 14 build/vignette.rds |binary inst/doc/all_plots_examples.R | 22 inst/doc/all_plots_examples.Rmd | 51 - inst/doc/all_plots_examples.html | 446 +++++----- inst/doc/all_tables_examples.R | 58 - inst/doc/all_tables_examples.html | 1572 +++++++++++++++++++------------------- inst/doc/bootstrap.R | 62 - inst/doc/bootstrap.html | 194 ++-- inst/doc/data_prep.html | 186 ++-- inst/doc/export.R | 54 - inst/doc/export.html | 146 +-- inst/doc/finalfit.R | 56 - inst/doc/finalfit.html | 236 ++--- inst/doc/missing.R | 54 - inst/doc/missing.html | 570 ++++++------- inst/doc/survival.R | 8 inst/doc/survival.html | 376 ++++----- man/coxphmulti.Rd | 2 man/coxphuni.Rd | 2 man/crrmulti.Rd | 2 man/crruni.Rd | 2 man/finalfit-package.Rd | 19 man/glmmixed.Rd | 2 man/glmuni.Rd | 2 man/lmmixed.Rd | 2 man/lmmulti.Rd | 2 man/lmuni.Rd | 2 man/missing_predictorMatrix.Rd | 2 man/svyglmmulti.Rd | 2 man/svyglmuni.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test_plots.R | 14 vignettes/all_plots_examples.Rmd | 51 - 43 files changed, 2256 insertions(+), 2132 deletions(-)
Title: Visualize Combined Action Response Surfaces and Report BRAID
Analyses
Description: Provides functions to visualize combined action data in 'ggplot2'.
Also provides functions for producing full BRAID analysis reports with
custom layouts and aesthetics, using the BRAID method originally described
in Twarog et al. (2016) <doi:10.1038/srep25523>.
Author: Anang Shelat [aut],
Nathaniel R. Twarog [aut, cre]
Maintainer: Nathaniel R. Twarog <nathaniel.twarog@stjude.org>
Diff between braidReports versions 1.0.1 dated 2024-09-29 and 1.0.5 dated 2025-09-03
DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++---------- NAMESPACE | 1 + R/basicBraidPlot.R |only R/braidReport.R | 32 ++++++++++++++++++++++++-------- README.md | 1 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/braidReports.html | 8 ++++---- inst/doc/heatmaps.html | 36 ++++++++++++++++++------------------ inst/doc/kappaTransform.html | 10 +++++----- man/basicBraidPlot.Rd |only man/makeBraidReport.Rd | 4 ++-- 13 files changed, 70 insertions(+), 52 deletions(-)
Title: Mediation Analysis with Missing Data and Non-Normal Data
Description: Methods for mediation analysis with missing data and non-normal data are implemented. For missing data, four methods are available: Listwise deletion, Pairwise deletion, Multiple imputation, and Two Stage Maximum Likelihood algorithm. For MI and TS-ML, auxiliary variables can be included to handle missing data. For handling non-normal data, bootstrap and two-stage robust methods can be used. Technical details of the methods can be found in Zhang and Wang (2013, <doi:10.1007/s11336-012-9301-5>), Zhang (2014, <doi:10.3758/s13428-013-0424-0>), and Yuan and Zhang (2012, <doi:10.1007/s11336-012-9282-4>).
Author: Shuigen Ming [aut],
Hong Zhang [aut],
Zhiyong Zhang [aut, cre],
Lijuan Wang [aut]
Maintainer: Zhiyong Zhang <johnnyzhz@gmail.com>
Diff between bmemLavaan versions 0.5 dated 2022-05-28 and 0.6 dated 2025-09-03
DESCRIPTION | 9 ++++----- MD5 | 14 +++++++------- build/partial.rdb |binary build/vignette.rds |binary man/bmem.Rd | 2 +- man/power.bmem.Rd | 2 +- man/power.curve.Rd | 2 +- man/summary.power.Rd | 2 +- 8 files changed, 15 insertions(+), 16 deletions(-)
Title: Processing Hemispherical Canopy Images
Description: Import and classify canopy fish-eye images, estimate angular gap fraction and derive canopy attributes like leaf area index and openness. Additional information is provided in the study by Chianucci F., Macek M. (2023) <doi:10.1016/j.agrformet.2023.109470>.
Author: Francesco Chianucci [aut, cre] ,
Martin Macek [aut]
Maintainer: Francesco Chianucci <fchianucci@gmail.com>
Diff between hemispheR versions 1.1.6 dated 2025-04-07 and 1.1.7 dated 2025-09-03
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS.md | 4 ++++ R/binarize_fisheye.R | 4 +++- R/import_fisheye.R | 10 ++++++++-- 5 files changed, 25 insertions(+), 13 deletions(-)
Title: Tools for Working with Names
Description: A system for organizing column names in data. Aimed at supporting a
prefix-based and suffix-based column naming scheme. Extends 'dplyr' functionality
to add ordering by function and more explicit renaming.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between name versions 0.0.1 dated 2022-08-11 and 0.0.2 dated 2025-09-03
DESCRIPTION | 16 ++-- LICENSE | 4 - MD5 | 83 +++++++++++------------ NAMESPACE | 84 +++++++++++------------ NEWS.md |only R/compare.R | 60 ++++++++-------- R/data.R | 48 ++++++------- R/list.R | 102 ++++++++++++++-------------- R/name-package.R | 8 +- R/phrase.R | 64 ++++++++--------- R/prefix.R | 98 +++++++++++++-------------- R/reexport-tidyselect.R | 66 +++++++++--------- R/relocate_with.R | 112 +++++++++++++++---------------- R/rename_with.R | 58 ++++++++-------- R/sort.R | 3 R/suffix.R | 104 ++++++++++++++--------------- README.md | 136 +++++++++++++++++++------------------- man/add_pref.Rd | 48 ++++++------- man/add_suff.Rd | 48 ++++++------- man/compare_names.Rd | 50 ++++++------- man/figures/logo.png |binary man/list_phrase.Rd | 48 ++++++------- man/list_pref.Rd | 44 ++++++------ man/list_suff.Rd | 44 ++++++------ man/reexports.Rd | 52 +++++++------- man/relocate_with.Rd | 74 ++++++++++---------- man/rem_phrase.Rd | 48 ++++++------- man/rem_pref.Rd | 48 ++++++------- man/rem_suff.Rd | 48 ++++++------- man/rename_with_loud.Rd | 70 +++++++++---------- man/repl_phrase.Rd | 52 +++++++------- man/repl_pref.Rd | 52 +++++++------- man/repl_suff.Rd | 52 +++++++------- man/sd.Rd | 56 +++++++-------- man/sort_phrase.Rd | 48 ++++++------- man/sort_pref.Rd | 44 ++++++------ man/sort_suff.Rd | 44 ++++++------ tests/testthat.R | 8 +- tests/testthat/test-compare.R | 14 +-- tests/testthat/test-phrase.R | 26 +++---- tests/testthat/test-prefix.R | 40 +++++------ tests/testthat/test-rename_with.R | 14 +-- tests/testthat/test-suffix.R | 40 +++++------ 43 files changed, 1083 insertions(+), 1075 deletions(-)
Title: Resampling Tools for Time Series Forecasting
Description: A 'modeltime' extension that implements forecast resampling tools
that assess time-based model performance and stability for a single time series,
panel data, and cross-sectional time series analysis.
Author: Matt Dancho [aut, cre],
Business Science [cph]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between modeltime.resample versions 0.2.4 dated 2025-08-28 and 0.3.0 dated 2025-09-03
modeltime.resample-0.2.4/modeltime.resample/vignettes/resample_results.rds |only modeltime.resample-0.3.0/modeltime.resample/DESCRIPTION | 14 modeltime.resample-0.3.0/modeltime.resample/MD5 | 27 - modeltime.resample-0.3.0/modeltime.resample/NEWS.md | 6 modeltime.resample-0.3.0/modeltime.resample/R/00_global_variables.R | 23 + modeltime.resample-0.3.0/modeltime.resample/R/modeltime_fit_resamples.R | 134 +++++-- modeltime.resample-0.3.0/modeltime.resample/R/plot_modeltime_resamples.R | 166 ++++----- modeltime.resample-0.3.0/modeltime.resample/R/utils-resamples.R | 140 ++++++-- modeltime.resample-0.3.0/modeltime.resample/inst/doc/getting-started.html | 116 +++--- modeltime.resample-0.3.0/modeltime.resample/inst/doc/panel-data.R | 16 modeltime.resample-0.3.0/modeltime.resample/inst/doc/panel-data.Rmd | 7 modeltime.resample-0.3.0/modeltime.resample/inst/doc/panel-data.html | 174 +++++----- modeltime.resample-0.3.0/modeltime.resample/man/mdl_time_fit_resamples.Rd | 2 modeltime.resample-0.3.0/modeltime.resample/man/plot_modeltime_resamples.Rd | 22 - modeltime.resample-0.3.0/modeltime.resample/vignettes/panel-data.Rmd | 7 15 files changed, 492 insertions(+), 362 deletions(-)
More information about modeltime.resample at CRAN
Permanent link
Title: Jot Down Values for Later
Description: Reproducible work requires a record of where every statistic originated.
When writing reports, some data is too big to load in the same environment and some statistics take a while to compute.
This package offers a way to keep notes on statistics, simple functions, and small objects.
Notepads can be locked to avoid accidental updates.
Notepads keep track of who added the notes and when the notes were added.
A simple text representation is used to allow for clear version histories.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between jot versions 0.0.4 dated 2022-08-27 and 0.0.5 dated 2025-09-03
DESCRIPTION | 16 +-- LICENSE | 4 MD5 | 47 +++++------ NAMESPACE | 42 +++++----- NEWS.md |only R/active.R | 120 ++++++++++++++-------------- R/get.R | 74 ++++++++--------- R/helpers.R | 18 ++-- R/lock.R | 86 ++++++++++---------- R/pad.R | 78 +++++++++--------- R/read.R | 176 +++++++++++++++++++++--------------------- R/write.R | 212 +++++++++++++++++++++++++-------------------------- R/zzz.R | 26 +++--- README.md | 20 ++++ man/figures/logo.png |binary man/get_jot_user.Rd | 46 +++++------ man/get_sys_time.Rd | 36 ++++---- man/jot.Rd | 102 ++++++++++++------------ man/jot_erase.Rd | 52 ++++++------ man/jot_list.Rd | 50 ++++++------ man/jot_lock.Rd | 62 +++++++------- man/jot_new_pad.Rd | 54 ++++++------ man/jot_open.Rd | 92 +++++++++++----------- man/jot_read.Rd | 62 +++++++------- man/jot_skim.Rd | 50 ++++++------ 25 files changed, 770 insertions(+), 755 deletions(-)
Title: Inky Color Schemes
Description: Provides color palettes designed to be reminiscent of text on paper.
The color schemes were taken from <https://stephango.com/flexoki>.
Includes discrete, continuous, and binned scales that are not necessarily
color-blind friendly. Simple scale and theme functions are available for use
with 'ggplot2'.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between flexoki versions 0.0.1 dated 2025-04-09 and 0.0.2 dated 2025-09-03
DESCRIPTION | 14 - LICENSE | 4 MD5 | 30 +-- NAMESPACE | 30 +-- NEWS.md | 8 - R/colors.R | 342 ++++++++++++++++++++++----------------------- R/scales.R | 284 ++++++++++++++++++------------------- R/theme.R | 146 +++++++++---------- README.md | 13 + man/flexoki-package.Rd | 50 +++--- man/flexoki.Rd | 44 ++--- man/scale_flexoki_b.Rd | 68 ++++---- man/scale_flexoki_c.Rd | 68 ++++---- man/scale_flexoki_d.Rd | 86 +++++------ man/theme_flexoki_dark.Rd | 60 +++---- man/theme_flexoki_light.Rd | 60 +++---- 16 files changed, 660 insertions(+), 647 deletions(-)
Title: Generate Alluvial Plots with a Single Line of Code
Description: Alluvial plots are similar to sankey diagrams and visualise categorical data
over multiple dimensions as flows. (Rosvall M, Bergstrom CT (2010) Mapping Change in
Large Networks. PLoS ONE 5(1): e8694. <doi:10.1371/journal.pone.0008694>
Their graphical grammar however is a bit more complex then that of a regular x/y
plots. The 'ggalluvial' package made a great job of translating that grammar into
'ggplot2' syntax and gives you many options to tweak the appearance of an alluvial
plot, however there still remains a multi-layered complexity that makes it difficult
to use 'ggalluvial' for explorative data analysis. 'easyalluvial' provides a simple
interface to this package that allows you to produce a decent alluvial plot from any
dataframe in either long or wide format from a single line of code while also handling
continuous data. It is meant to allow a quick visualisation of entire dataframes
with a focus on different colouring options that can make alluvial plots a great
tool for d [...truncated...]
Author: Bjoern Koneswarakantha [aut, cre]
Maintainer: Bjoern Koneswarakantha <datistics@gmail.com>
Diff between easyalluvial versions 0.3.2 dated 2023-12-07 and 0.4.0 dated 2025-09-03
easyalluvial-0.3.2/easyalluvial/tests/testthat/_snaps |only easyalluvial-0.4.0/easyalluvial/DESCRIPTION | 16 + easyalluvial-0.4.0/easyalluvial/MD5 | 88 ++-------- easyalluvial-0.4.0/easyalluvial/NAMESPACE | 1 easyalluvial-0.4.0/easyalluvial/NEWS.md | 3 easyalluvial-0.4.0/easyalluvial/R/alluvial_long.R | 6 easyalluvial-0.4.0/easyalluvial/R/alluvial_model_response.R | 13 - easyalluvial-0.4.0/easyalluvial/R/alluvial_wide.R | 6 easyalluvial-0.4.0/easyalluvial/R/expect_doppelganger.R | 4 easyalluvial-0.4.0/easyalluvial/R/manip.R | 36 +++- easyalluvial-0.4.0/easyalluvial/R/plot_condensation.R | 12 + easyalluvial-0.4.0/easyalluvial/R/plot_imp.R | 20 +- easyalluvial-0.4.0/easyalluvial/R/plot_marginal_hist.R | 82 ++++----- easyalluvial-0.4.0/easyalluvial/man/alluvial_model_response_parsnip.Rd | 3 easyalluvial-0.4.0/easyalluvial/man/figures/README-plot_long-1.png |binary easyalluvial-0.4.0/easyalluvial/man/figures/README-unnamed-chunk-3-1.png |binary easyalluvial-0.4.0/easyalluvial/man/figures/README-unnamed-chunk-5-1.png |binary easyalluvial-0.4.0/easyalluvial/man/figures/README-wide_plot-1.png |binary easyalluvial-0.4.0/easyalluvial/man/manip_explicit_na.Rd |only easyalluvial-0.4.0/easyalluvial/man/manip_get_ggplot_data.Rd |only easyalluvial-0.4.0/easyalluvial/tests/testthat/Rplots.pdf |binary easyalluvial-0.4.0/easyalluvial/tests/testthat/test_alluvial_long.R | 4 easyalluvial-0.4.0/easyalluvial/tests/testthat/test_alluvial_model_response.R | 15 - easyalluvial-0.4.0/easyalluvial/tests/testthat/test_alluvial_wide.R | 16 - easyalluvial-0.4.0/easyalluvial/tests/testthat/test_model.R | 3 easyalluvial-0.4.0/easyalluvial/tests/testthat/test_plot_condensation.R | 2 26 files changed, 165 insertions(+), 165 deletions(-)
Title: Brazilian Population Estimatives
Description: Functions to handle and aggregate population estimates for Brazilian municipalities by sex and age groups.
Author: Raphael Saldanha [aut, cre]
Maintainer: Raphael Saldanha <raphael.saldanha@fiocruz.br>
Diff between brpop versions 0.6.2 dated 2025-09-02 and 0.6.3 dated 2025-09-03
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS.md | 3 +++ R/mun_female_pop_totals.R | 17 ++++++++++++----- R/mun_male_pop_totals.R | 17 ++++++++++++----- R/mun_pop_age.R | 4 ++++ R/mun_pop_totals.R | 23 ++++++++++++++++------- R/mun_sex_pop.R | 17 ++++++++++++----- R/regsaude_female_pop.R | 33 ++++++++++++++++++++++++--------- R/regsaude_male_pop.R | 35 ++++++++++++++++++++++++----------- R/uf_female_pop_totals.R | 17 ++++++++++++----- R/uf_male_pop_totals.R | 17 ++++++++++++----- R/uf_pop_age.R | 4 ++++ R/uf_pop_totals.R | 24 ++++++++++++++++-------- R/uf_sex_pop.R | 17 ++++++++++++----- 15 files changed, 180 insertions(+), 82 deletions(-)
Title: Multivariate Data Analysis
Description: Simple Principal Components Analysis (PCA) and (Multiple)
Correspondence Analysis (CA) based on the Singular Value Decomposition
(SVD). This package provides S4 classes and methods to compute,
extract, summarize and visualize results of multivariate data
analysis. It also includes methods for partial bootstrap validation
described in Greenacre (1984, ISBN: 978-0-12-299050-2) and Lebart et
al. (2006, ISBN: 978-2-10-049616-7).
Author: Nicolas Frerebeau [aut, cre] ,
Jean-Baptiste Fourvel [ctb] ,
Camille Thabard [ctb] ,
Brice Lebrun [art] ,
Universite Bordeaux Montaigne [fnd] ,
CNRS [fnd]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between dimensio versions 0.14.0 dated 2025-05-20 and 0.14.1 dated 2025-09-03
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Title: Plots Coefficients from Fitted Models
Description: Plots the coefficients from model objects. This very quickly shows the user the point estimates and confidence intervals for fitted models.
Author: Jared Lander [aut, cre]
Maintainer: Jared Lander <packages@jaredlander.com>
Diff between coefplot versions 1.2.8 dated 2022-01-14 and 1.2.9 dated 2025-09-03
DESCRIPTION | 21 ++++++++++++++------- MD5 | 23 ++++++++++++----------- NAMESPACE | 9 +++++++++ R/buildPlot.r | 10 +++++----- R/coefplot-package.r | 16 ++++++++-------- R/coefplot.r | 10 ++++++---- R/extractCoef.r | 27 +++++++++++++++++++++++++-- R/position.r | 1 - README.md | 2 -- man/coefplot-package.Rd |only man/coefplot.Rd | 33 ++++++++++++++++++--------------- man/extract.coef.glmnet.Rd | 14 ++++++++++++++ man/extract.coef.maxLik.Rd | 21 +++++++++++++++++++++ 13 files changed, 132 insertions(+), 55 deletions(-)
Title: Creation of Stratum Orthogonal Arrays
Description: Creates stratum orthogonal arrays (also known as strong orthogonal arrays). These are arrays with more levels per column than the typical orthogonal array, and whose low order projections behave like orthogonal arrays, when collapsing levels to coarser strata. Details are described in Groemping (2022) "A unifying implementation of stratum (aka strong) orthogonal arrays" <http://www1.bht-berlin.de/FB_II/reports/Report-2022-002.pdf>.
Author: Ulrike Groemping [aut, cre],
Rob Carnell [ctb],
Hongquan Xu [ctb]
Maintainer: Ulrike Groemping <ulrike.groemping@bht-berlin.de>
Diff between SOAs versions 1.4 dated 2023-08-10 and 1.4-1 dated 2025-09-03
DESCRIPTION | 17 MD5 | 119 +- NAMESPACE | 1 R/MDLEs.R | 388 ++++----- R/OSOApb.R | 194 ++-- R/OSOAregulart.R | 232 ++--- R/OSOAs.R | 352 ++++---- R/OSOAs_hadamard.R | 234 ++--- R/OSOAs_regular.R | 188 ++-- R/SOAs-package.R | 140 +-- R/SOAs2plus_regular.R | 400 ++++----- R/SOAs_8level.R | 294 +++---- R/Spattern_FFbPoly.R | 366 ++++---- R/Spattern_complex.R | 366 ++++---- R/Spattern_old.R | 306 +++---- R/checkStratification.R | 1103 +++++++++++++-------------- R/contr.FFbHelmert.R | 174 ++-- R/contr.FFbPoly.R | 94 +- R/contr.Power.R | 150 +-- R/contr.TianXu.R | 162 +-- R/createABCcols.R | 52 - R/createSaturated.R | 2 R/createShiTang.R | 452 +++++------ R/fastSP.R |only R/guidance.R | 856 ++++++++++---------- R/print-methods.R | 124 +-- R/soa.R | 166 ++-- R/util_fastSP.R |only R/utilitiesEvaluate.R | 310 +++---- R/utilitiesGF.R | 250 +++--- build/partial.rdb |binary inst/NEWS | 6 man/SOAs-package.Rd | 3 man/Spattern.Rd | 6 man/contr.FFbased.Rd | 122 +- man/createABCcols.Rd |only man/createSaturated.Rd | 2 man/fastSP.Rd |only man/guide_SOAs.Rd | 142 +-- man/guide_SOAs_from_OA.Rd | 156 +-- man/phi_p.Rd | 2 man/util_fastSP.Rd |only man/utilitiesGF.Rd | 116 +- tests/testthat/_snaps/checkStratification.md | 228 ++--- tests/testthat/_snaps/guide_SOAs.md | 422 +++++----- tests/testthat/_snaps/guide_SOAs_from_OA.md | 74 - tests/testthat/_snaps/soa.md | 264 +++--- tests/testthat/_snaps/utilitiesCreate.md | 306 +++---- tests/testthat/_snaps/utilitiesEvaluate.md | 72 - tests/testthat/test-OSOAs-regular.R | 54 - tests/testthat/test-SOAs_8level.R | 92 +- tests/testthat/test-Spattern_iter.R | 158 +-- tests/testthat/test-XiaoXuMDLE.R | 24 tests/testthat/test-checkStratification.R | 252 +++--- tests/testthat/test-contr.Power.R | 60 - tests/testthat/test-createShiTang.R | 110 +- tests/testthat/test-guide_SOAs.R | 214 ++--- tests/testthat/test-guide_SOAs_from_OA.R | 128 +-- tests/testthat/test-soa.R | 26 tests/testthat/test-utilities.R | 40 tests/testthat/test-utilitiesCreate.R | 34 tests/testthat/test-utilitiesEvaluate.R | 84 +- tests/testthat/test-utilitiesGF.R | 176 ++-- 63 files changed, 5447 insertions(+), 5418 deletions(-)
Title: Efficient Outlier Detection for Large Time Series Databases
Description: Programs for detecting and cleaning outliers in single time series and in time series from homogeneous and heterogeneous databases using an Orthogonal Greedy Algorithm (OGA) for saturated linear regression models. The programs implement the procedures presented in the paper entitled "Efficient Outlier Detection for Large Time Series Databases" by Pedro Galeano, Daniel Peña and Ruey S. Tsay (2025), working paper, Universidad Carlos III de Madrid. Version 1.1.1 contains some improvements in parallelization with respect to version 1.0.1.
Author: Pedro Galeano [aut, cre] ,
Daniel Pena [aut] ,
Ruey S. Tsay [aut]
Maintainer: Pedro Galeano <pedro.galeano@uc3m.es>
Diff between outliers.ts.oga versions 1.0.1 dated 2025-02-27 and 1.1.1 dated 2025-09-03
DESCRIPTION | 21 +++++++++++---------- MD5 | 6 +++--- NAMESPACE | 3 ++- R/outliers.ts.oga.R | 51 +++++++++++++++++---------------------------------- 4 files changed, 33 insertions(+), 48 deletions(-)
More information about outliers.ts.oga at CRAN
Permanent link
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word', 'RTF' and 'Microsoft
PowerPoint' documents from R. The package focuses on tabular and
graphical reporting from R; it also provides two functions that let
users get document content into data objects. A set of functions lets
add and remove images, tables and paragraphs of text in new or
existing documents. The package does not require any installation of
Microsoft products to be able to write Microsoft files.
Author: David Gohel [aut, cre],
Stefan Moog [aut],
Mark Heckmann [aut] ,
ArData [cph],
Frank Hangler [ctb] ,
Liz Sander [ctb] ,
Anton Victorson [ctb] ,
Jon Calder [ctb] ,
John Harrold [ctb] ,
John Muschelli [ctb] ,
Bill Denney [ctb] ,
Nikolai Beck [ctb] ,
Gr [...truncated...]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.6.10 dated 2025-05-30 and 0.7.0 dated 2025-09-03
DESCRIPTION | 8 MD5 | 106 +- NAMESPACE | 7 NEWS.md | 29 R/docx_add.R | 430 ++++++++-- R/docx_append_context.R | 38 R/docx_part.R | 482 +++++++++++- R/docx_settings.R | 281 ++++-- R/formatting_properties.R | 13 R/ooxml.R | 28 R/ooxml_block_objects.R | 9 R/ooxml_run_objects.R | 9 R/ph_location.R | 27 R/ppt_ph_with_methods.R | 174 ---- R/pptx_informations.R | 13 R/read_docx.R | 191 +++- R/read_pptx.R | 18 R/relationship.R | 222 +++-- R/utils-xml.R | 28 R/utils.R | 25 R/zzz.R |only inst/examples/example_body_append_context.R |only inst/examples/example_body_import_docx.R |only inst/examples/example_ph_with.R |only inst/examples/example_phs_with.R | 12 inst/examples/example_plot_layout_properties.R | 9 man/block_toc.Rd | 2 man/body_add_blocks.Rd | 3 man/body_add_break.Rd | 3 man/body_add_caption.Rd | 3 man/body_add_docx.Rd | 7 man/body_add_fpar.Rd | 3 man/body_add_gg.Rd | 3 man/body_add_img.Rd | 3 man/body_add_par.Rd | 3 man/body_add_plot.Rd | 3 man/body_add_table.Rd | 3 man/body_add_toc.Rd | 5 man/body_append_context.Rd | 14 man/body_import_docx.Rd |only man/docx_set_settings.Rd |only man/fp_text.Rd | 5 man/fpar.Rd | 7 man/open_file.Rd |only man/ph_with.Rd | 28 man/phs_with.Rd | 12 man/plot_layout_properties.Rd | 14 man/print.rpptx.Rd | 14 man/read_docx.Rd | 15 man/set_doc_properties.Rd | 4 tests/testthat/docs_dir/test-no-placeholders-in-layout.pptx |only tests/testthat/test-docx-add.R | 4 tests/testthat/test-docx_settings.R |only tests/testthat/test-fp-text.R | 18 tests/testthat/test-import_docx.R |only tests/testthat/test-pptx-add.R | 25 tests/testthat/test-pptx-info.R | 6 tests/testthat/test-pptx-ph-location.R | 27 tests/testthat/test-properties.R | 10 59 files changed, 1815 insertions(+), 588 deletions(-)
Title: Pixel Filters for 'ggplot2' and 'grid'
Description: Provides a range of filters that can be applied to layers from the
'ggplot2' package and its extensions, along with other graphic elements such
as guides and theme elements. The filters are applied at render time and
thus uses the exact pixel dimensions needed.
Author: Thomas Lin Pedersen [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between ggfx versions 1.0.2 dated 2025-07-24 and 1.0.3 dated 2025-09-03
DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- NEWS.md | 4 ++++ R/filter-constructors.R | 2 +- R/ggplot.R | 2 +- R/shadow.R | 7 ++++++- inst/doc/custom_filters.html | 2 +- inst/doc/geoms.R | 4 ++-- inst/doc/geoms.Rmd | 4 ++-- inst/doc/geoms.html | 11 +++-------- man/figures/README-example-1.png |binary vignettes/geoms.Rmd | 4 ++-- 12 files changed, 39 insertions(+), 35 deletions(-)
Title: Fuzzy and Non-Fuzzy Classifiers
Description: It provides classifiers which can be used for discrete variables and for continuous variables based on the Naive Bayes and Fuzzy Naive Bayes hypothesis. Those methods were developed by researchers belong to the 'Laboratory of Technologies for Virtual Teaching and Statistics (LabTEVE)' and 'Laboratory of Applied Statistics to Image Processing and Geoprocessing (LEAPIG)' at 'Federal University of Paraiba, Brazil'. They considered some statistical distributions and their papers were published in the scientific literature, as for instance, the Gaussian classifier using fuzzy parameters, proposed by 'Moraes, Ferreira and Machado' (2021) <doi:10.1007/s40815-020-00936-4>.
Author: Jodavid Ferreira [aut, cre] ,
Ronei Moraes [ctb] ,
Liliane Machado [ctb] ,
Arthur Ricardo [ctb],
Isaac Araujo [ctb]
Maintainer: Jodavid Ferreira <jodavid@protonmail.com>
Diff between FuzzyClass versions 0.1.6 dated 2024-02-14 and 0.1.7 dated 2025-09-03
DESCRIPTION | 28 +- MD5 | 30 +-- NAMESPACE | 10 + NEWS.md | 6 R/DoubleWeightedFuzzyHiperGeometricNaiveBayes.R |only R/FuzzyHiperGeometricNaiveBayes.R |only R/FuzzyNaiveBayes.R | 49 +---- R/functions.R | 41 +++- README.md | 228 +++++++++++------------- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 11 + inst/doc/FuzzyClass.html | 9 inst/doc/index.html | 9 man/DWFuzzyHipergeometricNaiveBayes.Rd |only man/FuzzyClass-package.Rd | 2 man/FuzzyHipergeometricNaiveBayes.Rd |only man/FuzzyNaiveBayes.Rd | 25 -- 18 files changed, 234 insertions(+), 214 deletions(-)
Title: Classes and Methods for "Class Discovery" with Microarrays or
Proteomics
Description: Defines the classes used for "class discovery" problems
in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class
discovery primarily consists of unsupervised clustering methods with
attempts to assess their statistical significance.
Author: Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between ClassDiscovery versions 3.4.8 dated 2025-04-07 and 3.4.9 dated 2025-09-03
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/maha-test.pdf |binary inst/doc/oompa-cd.pdf |binary man/cd08-0-PCanova-class.Rd | 2 +- 6 files changed, 10 insertions(+), 10 deletions(-)
More information about ClassDiscovery at CRAN
Permanent link
Title: Transcription Elongation Profiling
Description: The general principle relies on calculating the cumulative signal of nascent
RNA sequencing over the gene body of any given gene or transcription unit.
'tepr' can identify transcription attenuation sites by comparing profile to
a null model which assumes uniform read density over the entirety of the
transcription unit. It can also identify increased or diminished
transcription attenuation by comparing two conditions. Besides rigorous
statistical testing and high sensitivity, a major feature of 'tepr' is its
ability to provide the elongation pattern of each individual gene, including
the position of the main attenuation point when such a phenomenon occurs.
Using 'tepr', users can visualize and refine genome-wide aggregated analyses
of elongation patterns to robustly identify effects specific to subsets of
genes. These metrics are suitable for internal comparisons (between genes in
each condition) and for studying elongation of the same gene in different
conditions or comparing it to a p [...truncated...]
Author: Nicolas Descostes [cre],
Victor Billon [aut],
Gael Cristofari [aut]
Maintainer: Nicolas Descostes <nicolas.descostes@gmail.com>
Diff between tepr versions 1.1.9 dated 2025-08-18 and 1.1.10 dated 2025-09-03
DESCRIPTION | 8 - MD5 | 16 +-- NAMESPACE | 1 NEWS | 4 R/plotauc.R | 1 inst/doc/tepr.R | 2 inst/doc/tepr.Rmd | 2 inst/doc/tepr.html | 241 +++++++++++++++++++++++++++-------------------------- vignettes/tepr.Rmd | 2 9 files changed, 144 insertions(+), 133 deletions(-)
Title: PARAFAC Analysis of EEMs from DOM
Description: 'This is a user-friendly way to run a parallel factor (PARAFAC) analysis (Harshman, 1971) <doi:10.1121/1.1977523> on excitation emission matrix (EEM) data from dissolved organic matter (DOM) samples (Murphy et al., 2013) <doi:10.1039/c3ay41160e>. The analysis includes profound methods for model validation. Some additional functions allow the calculation of absorbance slope parameters and create beautiful plots.'
Author: Matthias Pucher [aut, cre],
Daniel Graeber [aut, ctb],
Stefan Preiner [ctb],
Renata Pinto [ctb]
Maintainer: Matthias Pucher <matthias.pucher@gmx.net>
Diff between staRdom versions 1.1.28 dated 2023-06-16 and 1.1.30 dated 2025-09-03
DESCRIPTION | 36 - MD5 | 66 +- NAMESPACE | 4 R/absorption_functions.R | 26 R/correction_functions.R | 35 - R/data_check.R | 12 R/data_doc.R | 5 R/data_functions.R | 14 R/globals.R | 8 R/parafac_functions.R | 162 +++-- R/plot_functions.R | 204 ++++++ README | 10 build/partial.rdb |binary build/vignette.rds |binary data/eem_list.rda |binary data/eem_list_outliers.rda |binary data/peaks.rda |only data/pf_models.rda |binary data/sh.rda |binary inst/doc/Basic_analysis_of_DOM_samples.R | 540 ++++++++--------- inst/doc/Basic_analysis_of_DOM_samples.Rmd | 4 inst/doc/Basic_analysis_of_DOM_samples.html | 44 - inst/doc/PARAFAC_analysis_of_EEM.R | 288 +++++---- inst/doc/PARAFAC_analysis_of_EEM.Rmd | 41 + inst/doc/PARAFAC_analysis_of_EEM.html | 857 ++++++++++++++-------------- man/A_missing.Rd | 7 man/abs_parms.Rd | 16 man/eem_red2smallest.Rd | 4 man/eempf_mleverage.Rd | 2 man/geom_eempeakloc.Rd |only man/geom_eemregions.Rd |only man/geom_eemscatter.Rd |only man/ggeem.Rd | 2 man/ggeem_overlay.Rd |only man/peaks.Rd |only vignettes/Basic_analysis_of_DOM_samples.Rmd | 4 vignettes/PARAFAC_analysis_of_EEM.Rmd | 41 + 37 files changed, 1453 insertions(+), 979 deletions(-)
Title: Conduct Additional Modeling and Analysis for 'seminr'
Description: Supplemental functions for estimating and analysing structural equation models including Cross Validated Prediction and Testing (CVPAT, Liengaard et al., 2021 <doi:10.1111/deci.12445>).
Author: Soumya Ray [aut, ths],
Nicholas Patrick Danks [aut, cre]
Maintainer: Nicholas Patrick Danks <nicholasdanks@hotmail.com>
This is a re-admission after prior archival of version 0.1.0 dated 2025-07-22
Diff between seminrExtras versions 0.1.0 dated 2025-07-22 and 0.2.0 dated 2025-09-03
DESCRIPTION | 6 +-- MD5 | 21 +++++++------ R/feature_cvpat.R | 62 ++++++++++++++++++++-------------------- demo/00Index | 1 demo/seminr-help-debugging.R |only demo/seminr-pls-cvpat.R | 9 ++++- demo/seminr-workbook-v2-chap3.R | 37 +++++++++++++++++++++-- demo/seminr-workbook-v2-chap6.R | 42 +++++++++++++++++++++++++-- inst/doc/SEMinRExtras.html | 28 +++++++++--------- man/assess_cvpat.Rd | 13 +++----- man/assess_cvpat_compare.Rd | 8 ++--- tests/testthat/test-cvpat.R | 22 ++++++++++---- 12 files changed, 167 insertions(+), 82 deletions(-)
Title: Plots for the Quantitative Analysis of Textual Data
Description: Plotting functions for visualising textual data. Extends 'quanteda' and
related packages with plot methods designed specifically for text data, textual statistics,
and models fit to textual data. Plot types include word clouds, lexical dispersion plots,
scaling plots, network visualisations, and word 'keyness' plots.
Author: Kenneth Benoit [cre, aut, cph] ,
Kohei Watanabe [aut] ,
Haiyan Wang [aut] ,
Adam Obeng [aut] ,
Stefan Mueller [aut] ,
Akitaka Matsuo [aut] ,
Ian Fellows [cph] ),
European Research Council [fnd]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda.textplots versions 0.95 dated 2024-08-27 and 0.96 dated 2025-09-03
DESCRIPTION | 26 +++++++++++++------------- MD5 | 14 +++++++------- NEWS.md | 9 +++++++++ R/utils.R | 19 +++++-------------- inst/WORDLIST | 6 ++---- man/check_font.Rd | 9 +++++---- tests/testthat/test-textplot_network.R | 5 ++--- tests/testthat/test-utils.R | 7 +++---- 8 files changed, 46 insertions(+), 49 deletions(-)
More information about quanteda.textplots at CRAN
Permanent link
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] ,
Yves R. Sagaert [ctb]
Maintainer: Ivan Svetunkov <ivan@svetunkov.com>
Diff between greybox versions 2.0.5 dated 2025-06-30 and 2.0.6 dated 2025-09-03
DESCRIPTION | 10 +++---- MD5 | 28 ++++++++++----------- NAMESPACE | 4 +++ NEWS | 13 +++++++++ R/AutomaticDemandIdentifier.R | 55 +++++++++++++++++------------------------- R/graphmaker.R | 6 ++-- R/methods.R | 35 +++++++++++++++++++++++++- R/rmcb.R | 49 +++++++++++++++++++++++++++++++------ inst/doc/alm.html | 10 +++---- inst/doc/greybox.html | 6 ++-- inst/doc/maUsingGreybox.html | 4 +-- inst/doc/ro.html | 4 +-- man/aid.Rd | 3 +- man/graphmaker.Rd | 2 - man/rmcb.Rd | 14 +++++++++- 15 files changed, 164 insertions(+), 79 deletions(-)
Title: Functions for Community Data and Ordinations
Description: A collection of functions useful in (vegetation) community analyses and ordinations. Includes automatic species selection for ordination diagrams, NMDS stress/scree plots, species response curves, merging of taxa as well as calculation and sorting of synoptic tables.
Author: Friedemann von Lampe [aut, cre] ,
Schellenberg Jenny [aut]
Maintainer: Friedemann von Lampe <fvonlampe@uni-goettingen.de>
Diff between goeveg versions 0.7.6 dated 2025-06-13 and 0.7.9 dated 2025-09-03
DESCRIPTION | 12 - MD5 | 63 +++--- NAMESPACE | 3 NEWS.md | 113 ++++++----- R/clean_matrix.R | 2 R/cov2per.R | 2 R/cv.r | 1 R/globals.R |only R/hcr_resampling.R |only R/merge_taxa.R | 3 R/ordiselect.r | 2 R/racurve.r | 2 R/racurves.r | 2 R/screeplot_NMDS.R | 2 R/specresponse.R | 2 R/synsort.R | 431 +++++++++++++++++++++++++++++++----------- R/syntable.R | 502 ++++++++++++++++---------------------------------- R/syntable_long.R |only R/syntable_wide.R |only R/trans_matrix.R | 2 README.md | 25 ++ build/partial.rdb |binary man/clean_matrix.Rd | 74 +++---- man/cov2per.Rd | 2 man/cv.Rd | 2 man/hcr_resampling.Rd |only man/merge_taxa.Rd | 2 man/ordiselect.Rd | 2 man/racurve.Rd | 2 man/racurves.Rd | 2 man/screeplot_NMDS.Rd | 2 man/specresponse.Rd | 2 man/synsort.Rd | 104 +++++++--- man/syntable.Rd | 167 +++++++++++----- man/trans_matrix.Rd | 78 +++---- 35 files changed, 884 insertions(+), 724 deletions(-)
Title: Catalogues of Resolution IV 128 Run 2-Level Fractional
Factorials Up to 33 Factors that Do Have 5-Letter Words
Description: Catalogues of resolution IV regular
fractional factorial designs in 128 runs are provided
for up to 33 2-level factors. The catalogues are complete,
excluding resolution IV designs without 5-letter words,
because these do not add value for a search for unblocked
clear designs. The previous package version
1.0 with complete catalogues up to 24 runs (24 runs and a
namespace added later) can be downloaded from the authors
website.
Author: Ulrike Groemping [aut, cre]
Maintainer: Ulrike Groemping <ulrike.groemping@bht-berlin.de>
Diff between FrF2.catlg128 versions 1.2-3 dated 2023-10-07 and 1.2-4 dated 2025-09-03
DESCRIPTION | 12 +++--- MD5 | 6 +-- inst/NEWS | 6 ++- man/Catalogues.Rd | 98 +++++++++++++++++++++++++++--------------------------- 4 files changed, 64 insertions(+), 58 deletions(-)
Title: Building and Estimating Structural Equation Models
Description: A powerful, easy to use syntax for specifying and estimating complex
Structural Equation Models. Models can be estimated using Partial
Least Squares Path Modeling or Covariance-Based Structural Equation
Modeling or covariance based Confirmatory Factor Analysis (Ray, Danks, and Valdez 2021 <doi:10.2139/ssrn.3900621>).
Author: Soumya Ray [aut, ths],
Nicholas Patrick Danks [aut, cre],
Andre Calero Valdez [aut],
Juan Manuel Velasquez Estrada [ctb],
James Uanhoro [ctb],
Johannes Nakayama [ctb],
Lilian Koyan [ctb],
Laura Burbach [ctb],
Arturo Heynar Cano Bejar [ctb],
Susanne A [...truncated...]
Maintainer: Nicholas Patrick Danks <nicholasdanks@hotmail.com>
This is a re-admission after prior archival of version 2.3.6 dated 2025-07-24
Diff between seminr versions 2.3.6 dated 2025-07-24 and 2.3.7 dated 2025-09-03
DESCRIPTION | 12 MD5 | 38 - NAMESPACE | 2 R/clean_data.R | 12 R/compute_metrics.R | 36 + R/estimate_pls.R | 4 R/estimate_simplePLS.R | 2 R/evaluate_reliability.R | 28 + R/feature_plspredict.R | 147 +++-- R/report_lavaan.R | 67 +- R/report_summary.R | 33 + R/seminr-package.R |only README.md | 4 build/partial.rdb |only inst/doc/SEMinR.html | 10 man/estimate_pls.Rd | 3 man/mean_replacement.Rd | 1 man/report_missing.Rd |only man/seminr-package.Rd |only tests/fixtures/V_3_6_0/two_stage_predict.csv | 692 +++++++++++++-------------- tests/testthat/test-plspredict.R | 27 - tests/testthat/test-summary-cbsem.R | 2 22 files changed, 645 insertions(+), 475 deletions(-)
Title: Pretest Probability for Coronary Artery Disease
Description: An application to calculate a patient's pretest probability
(PTP) for obstructive Coronary Artery Disease (CAD) from a collection
of guidelines or studies. Guidelines usually comes from the American
Heart Association (AHA), American College of Cardiology (ACC) or
European Society of Cardiology (ESC). Examples of PTP scores that
comes from studies are the 2020 Winther et al. basic, Risk
Factor-weighted Clinical Likelihood (RF-CL) and Coronary Artery
Calcium Score-weighted Clinical Likelihood (CACS-CL) models
<doi:10.1016/j.jacc.2020.09.585>, 2019 Reeh et al. basic and clinical
models <doi:10.1093/eurheartj/ehy806> and 2017 Fordyce et al. PROMISE
Minimal-Risk Tool <doi:10.1001/jamacardio.2016.5501>. As diagnosis of
CAD involves a costly and invasive coronary angiography procedure for
patients, having a reliable PTP for CAD helps doctors to make better
decisions during patient management. This ensures high risk patients
can be diagnosed and treated early for CAD while [...truncated...]
Author: Jeremy Selva [aut, cre]
Maintainer: Jeremy Selva <jeremy1189.jjs@gmail.com>
Diff between pretestcad versions 1.0.2 dated 2025-05-19 and 1.1.0 dated 2025-09-03
DESCRIPTION | 54 - MD5 | 135 +- NAMESPACE | 93 - NEWS.md | 20 R/aha_2012_conference_ptp.R | 64 - R/aha_2021_conference_ptp.R | 87 + R/cad_consortium_ptp.R | 326 +++++- R/confirm_ptp.R | 208 +++ R/dcs_ptp.R | 796 +++++++++++---- R/diamond_forrester_ptp.R | 60 - R/esc_2019_conference_ptp.R | 121 +- R/esc_2024_conference_ptp.R | 351 +++++- R/harmonise.R |only R/lah_ptp.R | 265 ++++- R/pmrs_ptp.R | 197 +++ R/precise_ptp.R | 389 ++++++- R/reeh_ptp.R | 217 +++- R/utilities.R | 845 +++++++++++++++- R/winther_ptp.R | 182 +++ inst/WORDLIST | 3 inst/hexsticker.pptx |only man/arg_match0_allow_na.Rd | 13 man/arg_match0_integer.Rd | 23 man/arg_match0_no_na_error_message.Rd |only man/arg_match0_true_or_false.Rd | 29 man/calculate_aha_2012_tbl_9_ptp.Rd | 49 man/calculate_aha_2021_ptp.Rd | 63 - man/calculate_cad1_2011_ptp.Rd | 55 - man/calculate_cad2_2012_basic_ptp.Rd | 55 - man/calculate_cad2_2012_clinical_ccs_ptp.Rd | 149 ++ man/calculate_cad2_2012_clinical_ptp.Rd | 149 ++ man/calculate_confirm_2015_num_of_rf.Rd | 125 +- man/calculate_confirm_2015_ptp.Rd | 140 +- man/calculate_dcs_1993_lm_cad_ptp.Rd | 120 +- man/calculate_dcs_1993_pain_index.Rd | 123 +- man/calculate_dcs_1993_risk_factor_index.Rd | 78 + man/calculate_dcs_1993_severe_cad_ptp.Rd | 289 +++-- man/calculate_dcs_1993_sig_cad_ptp.Rd | 194 ++- man/calculate_dcs_1993_vascular_disease_index.Rd | 78 + man/calculate_diamond_forrester_1979_ptp.Rd | 49 man/calculate_esc_2019_ptp.Rd | 74 + man/calculate_esc_2024_fig_4_ptp.Rd | 186 ++- man/calculate_esc_2024_fig_4_ptp_simplfied.Rd | 29 man/calculate_esc_2024_num_of_rf.Rd | 128 +- man/calculate_esc_2024_symptom_score.Rd | 61 - man/calculate_lah_2022_clinical_ptp.Rd | 149 ++ man/calculate_lah_2022_extended_ptp.Rd | 149 ++ man/calculate_precise_2021_clinical_ptp.Rd | 199 ++- man/calculate_precise_2021_simple_ptp.Rd | 153 ++ man/calculate_prms_2017_ptp.Rd | 200 ++- man/calculate_reeh_2019_basic_ptp.Rd | 48 man/calculate_reeh_2019_clinical_ptp.Rd | 110 +- man/calculate_winther_2020_basic_ptp.Rd | 60 - man/calculate_winther_2020_cacs_cl_ptp.Rd | 200 ++- man/calculate_winther_2020_rf_cl_ptp.Rd | 200 ++- man/check_if_four_categories_are_mutually_exclusive.Rd |only man/check_if_integer.Rd |only man/check_if_non_negative.Rd | 32 man/check_if_numeric.Rd | 22 man/check_if_positive.Rd | 17 man/check_if_three_categories_are_mutually_exclusive.Rd |only man/check_if_two_categories_are_mutually_exclusive.Rd |only man/chr_quoted.Rd |only man/harmonise_four_labels.Rd |only man/harmonise_three_labels.Rd |only man/harmonise_two_labels.Rd |only man/oxford_comma.Rd |only tests/testthat/_snaps/aha_2012_conference_ptp.md |only tests/testthat/_snaps/esc_2019_conference_ptp.md |only tests/testthat/_snaps/esc_2024_conference_ptp.md |only tests/testthat/_snaps/harmonise.md |only tests/testthat/_snaps/utilities.md | 174 ++- tests/testthat/test-aha_2012_conference_ptp.R | 176 ++- tests/testthat/test-esc_2019_conference_ptp.R | 264 ++++ tests/testthat/test-esc_2024_conference_ptp.R | 190 +++ tests/testthat/test-harmonise.R |only tests/testthat/test-utilities.R | 253 ++++ 77 files changed, 7418 insertions(+), 1850 deletions(-)
Title: Creation of Arrays by Mixed Integer Programming
Description: 'CRAN' packages 'DoE.base' and 'Rmosek' and non-'CRAN' package 'gurobi' are enhanced with functionality for the creation of optimized arrays for experimentation, where optimization is in terms of generalized minimum aberration. It is also possible to optimally extend existing arrays to larger run size. The package writes 'MPS' (Mathematical Programming System) files for use with any mixed integer optimization software that can process such files. If at least one of the commercial products 'Gurobi' or 'Mosek' (free academic licenses available for both) is available, the package also creates arrays by optimization. For installing 'Gurobi' and its R package 'gurobi', follow instructions at <https://support.gurobi.com/hc/en-us/articles/14462206790033-How-do-I-install-Gurobi-for-R>. For installing 'Mosek' and its R package 'Rmosek', follow instructions at <https://www.mosek.com/downloads/> and <https://docs.mosek.com/8.1/rmosek/install-interface.html>, or use the functiona [...truncated...]
Author: Ulrike Groemping [aut, cre]
Maintainer: Ulrike Groemping <ulrike.groemping@bht-berlin.de>
Diff between DoE.MIParray versions 1.0-1 dated 2023-08-21 and 1.0-2 dated 2025-09-03
DESCRIPTION | 16 +++++++---- MD5 | 10 +++---- inst/NEWS | 9 +++++- man/DoE.MIParray-package.Rd | 2 - man/functionsFromDoEbase.Rd | 60 ++++++++++++++++++++++---------------------- man/mosek_MIParray.Rd | 2 - 6 files changed, 54 insertions(+), 45 deletions(-)
Title: Diagnostics for Nonlinear Mixed-Effect Models
Description: A model building aid for nonlinear mixed-effects
(population) model analysis using NONMEM, facilitating data set
checkout, exploration and visualization, model diagnostics, candidate
covariate identification and model comparison. The methods are described
in Keizer et al. (2013) <doi:10.1038/psp.2013.24>, and Jonsson et al. (1999)
<doi:10.1016/s0169-2607(98)00067-4>.
Author: Andrew C. Hooker [aut, cre, cph],
Mats O. Karlsson [aut, cph],
Justin J. Wilkins [aut],
E. Niclas Jonsson [aut, trl, cph],
Ron Keizer [ctb]
Maintainer: Andrew C. Hooker <andrew.hooker@uu.se>
Diff between xpose4 versions 4.7.3 dated 2024-02-22 and 4.7.4 dated 2025-09-03
DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/xpose.VPC.categorical.R | 4 ++-- README.md | 6 ------ build/partial.rdb |binary man/xpose.VPC.categorical.Rd | 4 ++-- 7 files changed, 21 insertions(+), 23 deletions(-)
Title: Worldwide or Coordinates-Based Heat Maps
Description: Easily plot heat maps of the world, based on continuous or categorical data. Country labels can also be added to the map.
Author: Luigi Annicchiarico [cre, aut]
Maintainer: Luigi Annicchiarico <luigi.annic@gmail.com>
Diff between WorldMapR versions 1.2.0 dated 2025-03-21 and 1.3.0 dated 2025-09-03
WorldMapR-1.2.0/WorldMapR/tests/testthat/test_geometry_data.R |only WorldMapR-1.3.0/WorldMapR/DESCRIPTION | 10 - WorldMapR-1.3.0/WorldMapR/MD5 | 37 ++-- WorldMapR-1.3.0/WorldMapR/NAMESPACE | 13 - WorldMapR-1.3.0/WorldMapR/NEWS.md | 8 + WorldMapR-1.3.0/WorldMapR/R/WorldMapR-package.R | 14 - WorldMapR-1.3.0/WorldMapR/R/countrycoord_data.R | 27 ++- WorldMapR-1.3.0/WorldMapR/R/empty_editable_map.R |only WorldMapR-1.3.0/WorldMapR/R/geometries_data.R | 77 +++++----- WorldMapR-1.3.0/WorldMapR/R/globals.R | 7 WorldMapR-1.3.0/WorldMapR/R/regions_ITBIH.R |only WorldMapR-1.3.0/WorldMapR/R/worldplot.R | 4 WorldMapR-1.3.0/WorldMapR/R/worldplotCat.R | 3 WorldMapR-1.3.0/WorldMapR/README.md | 2 WorldMapR-1.3.0/WorldMapR/data/regions_ITBIH.RData |only WorldMapR-1.3.0/WorldMapR/inst/doc/WorldMapR_Vignette.R | 7 WorldMapR-1.3.0/WorldMapR/inst/doc/WorldMapR_Vignette.Rmd | 15 + WorldMapR-1.3.0/WorldMapR/inst/doc/WorldMapR_Vignette.html | 21 ++ WorldMapR-1.3.0/WorldMapR/man/empty_editable_map.Rd |only WorldMapR-1.3.0/WorldMapR/man/geometries_data.Rd | 5 WorldMapR-1.3.0/WorldMapR/man/regions_ITBIH.Rd |only WorldMapR-1.3.0/WorldMapR/tests/testthat/test_countrycoord_data.R |only WorldMapR-1.3.0/WorldMapR/vignettes/WorldMapR_Vignette.Rmd | 15 + 23 files changed, 164 insertions(+), 101 deletions(-)
Title: Fast Molecular Clock Dating of Phylogenetic Trees with Rate
Variation
Description: Functions for estimating times of common ancestry and molecular clock rates of evolution using a variety of evolutionary models, parametric and nonparametric bootstrap confidence intervals, methods for detecting outlier lineages, root-to-tip regression, and a statistical test for selecting molecular clock models. For more details see Volz and Frost (2017) <doi:10.1093/ve/vex025>.
Author: Erik Volz [aut, cre]
Maintainer: Erik Volz <erik.volz@gmail.com>
This is a re-admission after prior archival of version 0.5.0 dated 2020-01-26
Diff between treedater versions 0.5.0 dated 2020-01-26 and 1.0.2 dated 2025-09-03
DESCRIPTION | 13 MD5 | 45 +- NAMESPACE | 1 R/boot.R | 138 +++--- R/multiRtT.R | 10 R/outliers0.R | 34 - R/treedater0.R | 525 ++++++++++++++--------- README.md | 5 build/vignette.rds |binary inst/doc/h3n2.R | 42 - inst/doc/h3n2.Rmd | 14 inst/doc/h3n2.html | 909 +++++++++++++++++++++++------------------ man/boot.Rd | 26 - man/dater.Rd | 38 + man/gibbs_jitter.Rd |only man/goodnessOfFitPlot.Rd | 2 man/outlierLineages.Rd | 2 man/outlierTips.Rd | 2 man/parboot.Rd | 26 - man/plot.bootTreedater.Rd | 5 man/relaxedClockTest.Rd | 7 man/rootToTipRegressionPlot.Rd | 17 man/sampleYearsFromLabels.Rd | 17 vignettes/h3n2.Rmd | 14 24 files changed, 1084 insertions(+), 808 deletions(-)
Title: R Interface to 'IGN' Web Services
Description: Automatic open data acquisition from resources of IGN
('Institut National de Information Geographique et forestiere')
(<https://www.ign.fr/>). Available datasets include various types of
raster and vector data, such as digital elevation models, state
borders, spatial databases, cadastral parcels, and more. 'happign' also
provide access to API Carto (<https://apicarto.ign.fr/api/doc/>).
Author: Paul Carteron [aut, cre]
Maintainer: Paul Carteron <carteronpaul@gmail.com>
Diff between happign versions 0.3.5 dated 2025-07-29 and 0.3.6 dated 2025-09-03
happign-0.3.5/happign/R/get_apicarto_rpg.R |only happign-0.3.5/happign/R/get_apicarto_viticole.R |only happign-0.3.5/happign/R/hit_api.R |only happign-0.3.5/happign/man/get_apicarto_rpg.Rd |only happign-0.3.5/happign/man/get_apicarto_viticole.Rd |only happign-0.3.5/happign/tests/testthat/api_gpu_x_input |only happign-0.3.5/happign/tests/testthat/fetch_data |only happign-0.3.5/happign/tests/testthat/fetch_data error dtolerance |only happign-0.3.5/happign/tests/testthat/fetch_data error no data |only happign-0.3.5/happign/tests/testthat/get_api_codes_postaux |only happign-0.3.5/happign/tests/testthat/get_apicarto_cadastre |only happign-0.3.5/happign/tests/testthat/get_apicarto_rpg |only happign-0.3.5/happign/tests/testthat/hit_api_error |only happign-0.3.5/happign/tests/testthat/test-get_apicarto_rpg.R |only happign-0.3.5/happign/tests/testthat/test-hit_api.R |only happign-0.3.6/happign/DESCRIPTION | 8 happign-0.3.6/happign/MD5 | 82 +- happign-0.3.6/happign/NAMESPACE | 8 happign-0.3.6/happign/NEWS.md | 20 happign-0.3.6/happign/R/get_apicarto_cadastre.R | 256 +++--- happign-0.3.6/happign/R/get_apicarto_codes_postaux.R | 42 - happign-0.3.6/happign/R/get_apicarto_gpu.R | 388 +++++----- happign-0.3.6/happign/R/utils.R | 41 - happign-0.3.6/happign/man/get_apicarto_cadastre.Rd | 93 +- happign-0.3.6/happign/man/get_apicarto_codes_postaux.Rd | 8 happign-0.3.6/happign/man/get_apicarto_gpu.Rd | 190 ++-- happign-0.3.6/happign/man/get_gpu_layers.Rd |only happign-0.3.6/happign/tests/testthat/apicarto-cadastre |only happign-0.3.6/happign/tests/testthat/apicarto-codes-postaux |only happign-0.3.6/happign/tests/testthat/apicarto-gpu |only happign-0.3.6/happign/tests/testthat/test-get_apicarto_cadastre.R | 255 +++--- happign-0.3.6/happign/tests/testthat/test-get_apicarto_codes_postaux.R | 43 - happign-0.3.6/happign/tests/testthat/test-get_apicarto_gpu.R | 103 +- happign-0.3.6/happign/tests/testthat/test-utils.R | 44 - 34 files changed, 848 insertions(+), 733 deletions(-)
Title: Quality Control and Semantic Enrichment of Datasets
Description: A tool for the preparation and enrichment of health datasets for analysis (Toner et al. (2023) <doi:10.1093/gigascience/giad030>). Provides functionality for assessing data quality and for improving the reliability and machine interpretability of a dataset.
'eHDPrep' also enables semantic enrichment of a dataset where metavariables are discovered from the relationships between input variables determined from user-provided ontologies.
Author: Tom Toner [aut] ,
Ian Overton [aut, cre]
Maintainer: Ian Overton <I.Overton@qub.ac.uk>
Diff between eHDPrep versions 1.3.3 dated 2023-06-05 and 1.3.4 dated 2025-09-03
eHDPrep-1.3.3/eHDPrep/tests/testthat/Rplots.pdf |only eHDPrep-1.3.4/eHDPrep/DESCRIPTION | 14 +- eHDPrep-1.3.4/eHDPrep/MD5 | 18 +-- eHDPrep-1.3.4/eHDPrep/R/semantic_enrich.R | 4 eHDPrep-1.3.4/eHDPrep/README.md |only eHDPrep-1.3.4/eHDPrep/build/partial.rdb |binary eHDPrep-1.3.4/eHDPrep/build/vignette.rds |binary eHDPrep-1.3.4/eHDPrep/inst/doc/Introduction_to_eHDPrep.R | 76 ++++++------- eHDPrep-1.3.4/eHDPrep/inst/doc/Introduction_to_eHDPrep.pdf |binary eHDPrep-1.3.4/eHDPrep/man/join_vars_to_ontol.Rd | 2 eHDPrep-1.3.4/eHDPrep/man/metavariable_agg.Rd | 2 11 files changed, 58 insertions(+), 58 deletions(-)
Title: Consistent Perturbation of Statistical Frequency- And Magnitude
Tables
Description: Data from statistical agencies and other institutions often
need to be protected before they can be published. This package
can be used to perturb statistical tables in a consistent way. The
main idea is to add - at the micro data level - a record key for each
unit. Based on these keys, for any cell in a statistical table a
cell key is computed as a function on the record keys contributing to
a specific cell. Values that are added to the cell in order to perturb
it are derived from a lookup-table that maps values of cell keys to
specific perturbation values. The theoretical basis for the methods
implemented can be found in Thompson, Broadfoot and Elazar
(2013) <https://unece.org/fileadmin/DAM/stats/documents/ece/ces/ge.46/2013/Topic_1_ABS.pdf>
which was extended and enhanced by Giessing and Tent
(2019) <https://unece.org/fileadmin/DAM/stats/documents/ece/ces/ge.46/2019/mtg1/SDC2019_S2_Germany_Giessing_Tent_AD.pdf>.
Author: Bernhard Meindl [aut, cre]
Maintainer: Bernhard Meindl <bernhard.meindl@statistik.gv.at>
Diff between cellKey versions 1.0.2 dated 2023-11-24 and 1.0.3 dated 2025-09-03
DESCRIPTION | 14 - MD5 | 14 - NEWS.md | 4 R/cellkey_pkg.R | 3 inst/doc/introduction.Rmd | 320 ++++++++++++++++++++-------------------- inst/doc/introduction.html | 315 +++++++++++++++++++-------------------- vignettes/introduction.Rmd | 320 ++++++++++++++++++++-------------------- vignettes/introduction.Rmd.orig | 20 +- 8 files changed, 506 insertions(+), 504 deletions(-)
Title: Create Ternary and Holdridge Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) and
Holdridge life zone plots <doi:10.1126/science.105.2727.367> using the
standard graphics functions.
Allows custom annotation, interpolating, contouring and scaling of plotting
region.
Includes a 'Shiny' user interface for point-and-click ternary plotting.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Author: Martin R. Smith [aut, cre, cph] ,
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 2.3.4 dated 2025-05-07 and 2.3.5 dated 2025-09-03
DESCRIPTION | 6 MD5 | 98 NAMESPACE | 166 NEWS.md | 5 R/Annotate.R | 17 R/Contours.R | 25 R/Coordinates.R | 13 R/Polygons.R | 73 R/TernaryPlot.R | 8 R/data.R | 14 build/partial.rdb |binary build/vignette.rds |binary inst/TernaryApp/app.R | 1208 inst/WORDLIST | 98 inst/doc/Holdridge.Rmd | 300 inst/doc/Holdridge.html | 4 inst/doc/Ternary.Rmd | 818 inst/doc/Ternary.html | 6 inst/doc/annotation.html | 4 inst/doc/interpolation.Rmd | 350 inst/doc/interpolation.html | 4 inst/doc/new-users.Rmd | 510 inst/doc/new-users.html | 4 man/AddToTernary.Rd | 290 man/Annotate.Rd | 4 man/ColourTernary.Rd | 224 man/CoordinatesToXY.Rd | 4 man/Polygon-Geometry.Rd | 98 man/TernaryContour.Rd | 298 man/TernaryDensityContour.Rd | 344 man/TernaryPointValues.Rd | 170 man/TriangleCentres.Rd | 103 man/TriangleInHull.Rd | 119 man/cbPalettes.Rd | 12 tests/testthat/Rplots.pdf |only tests/testthat/_snaps/Annotate/annotate-zoomed.svg |only tests/testthat/_snaps/Contours/contours-skiwiff.svg | 5442 - tests/testthat/_snaps/Contours/contours.svg | 5644 - tests/testthat/_snaps/Contours/density-contours.svg | 3844 - tests/testthat/_snaps/Contours/filledcontours.svg |48210 ++++++------- tests/testthat/_snaps/Contours/lo-res-density-contours.svg | 1352 tests/testthat/_snaps/Holdridge/holdridge-basic.svg | 594 tests/testthat/test-Annotate.R | 7 tests/testthat/test-Contours.R | 10 tests/testthat/test-Coordinates.R | 310 tests/testthat/test-Holdridge.R | 56 tests/testthat/test-Polygons.R | 47 vignettes/Holdridge.Rmd | 300 vignettes/Ternary.Rmd | 818 vignettes/interpolation.Rmd | 350 vignettes/new-users.Rmd | 510 51 files changed, 36423 insertions(+), 36468 deletions(-)
Title: Spatial Seemingly Unrelated Regression Models
Description: A collection of functions to test and estimate Seemingly
Unrelated Regression (usually called SUR) models, with spatial structure, by maximum
likelihood and three-stage least squares. The package estimates the
most common spatial specifications, that is, SUR with Spatial Lag of
X regressors (called SUR-SLX), SUR with Spatial Lag Model (called SUR-SLM),
SUR with Spatial Error Model (called SUR-SEM), SUR with Spatial Durbin Model (called SUR-SDM),
SUR with Spatial Durbin Error Model (called SUR-SDEM),
SUR with Spatial Autoregressive terms and Spatial Autoregressive
Disturbances (called SUR-SARAR), SUR-SARAR with Spatial Lag of X
regressors (called SUR-GNM) and SUR with Spatially Independent Model (called SUR-SIM).
The methodology of these models can be found in next references
Minguez, R., Lopez, F.A., and Mur, J. (2022) <doi:10.18637/jss.v104.i11>
Mur, J., Lopez, F.A., and Herrera, M. (2010) <doi:10.1080/17421772.2010.516443>
Lopez, F.A., Mur, J., and Angulo, A. (2014) <d [...truncated...]
Author: Ana Angulo [aut],
Fernando A Lopez [aut],
Roman Minguez [aut, cre],
Jesus Mur [aut]
Maintainer: Roman Minguez <roman.minguez@uclm.es>
Diff between spsur versions 1.0.2.5 dated 2022-10-29 and 1.0.2.6 dated 2025-09-03
spsur-1.0.2.5/spsur/R/spSUR-package.R |only spsur-1.0.2.6/spsur/DESCRIPTION | 23 spsur-1.0.2.6/spsur/MD5 | 44 spsur-1.0.2.6/spsur/R/impactspsur.R | 8 spsur-1.0.2.6/spsur/R/spsur-package.R |only spsur-1.0.2.6/spsur/R/spsur3sls.R | 2 spsur-1.0.2.6/spsur/R/spsurgs3sls.R | 2 spsur-1.0.2.6/spsur/build/vignette.rds |binary spsur-1.0.2.6/spsur/inst/doc/Vignette_User_Guide.Rmd | 16 spsur-1.0.2.6/spsur/inst/doc/Vignette_User_Guide.html | 281 - spsur-1.0.2.6/spsur/inst/doc/montecarlo_spsur_spse.Rmd | 732 +-- spsur-1.0.2.6/spsur/inst/doc/montecarlo_spsur_spse.html | 3440 +++++++++++----- spsur-1.0.2.6/spsur/inst/doc/spsur-vs-spatialreg.Rmd | 26 spsur-1.0.2.6/spsur/inst/doc/spsur-vs-spatialreg.html | 475 -- spsur-1.0.2.6/spsur/inst/doc/spsur_pysal.Rmd | 36 spsur-1.0.2.6/spsur/inst/doc/spsur_pysal.html | 2126 +++++++-- spsur-1.0.2.6/spsur/man/impactspsur.Rd | 8 spsur-1.0.2.6/spsur/man/spsur-package.Rd | 19 spsur-1.0.2.6/spsur/man/spsur3sls.Rd | 2 spsur-1.0.2.6/spsur/man/spsurgs3sls.Rd | 2 spsur-1.0.2.6/spsur/vignettes/Vignette_User_Guide.Rmd | 16 spsur-1.0.2.6/spsur/vignettes/montecarlo_spsur_spse.Rmd | 732 +-- spsur-1.0.2.6/spsur/vignettes/spsur-vs-spatialreg.Rmd | 26 spsur-1.0.2.6/spsur/vignettes/spsur_pysal.Rmd | 36 24 files changed, 5135 insertions(+), 2917 deletions(-)
Title: Mapping Smoothed Effect Estimates from Individual-Level Data
Description: Contains functions for mapping odds ratios, hazard ratios, or other effect estimates using individual-level data such as case-control study data, using generalized additive models (GAMs) or Cox models for smoothing with a two-dimensional predictor (e.g., geolocation or exposure to chemical mixtures) while adjusting linearly for confounding variables, using methods described by Kelsall and Diggle (1998), Webster at al. (2006), and Bai et al. (2020). Includes convenient functions for mapping point estimates and confidence intervals, efficient control sampling, and permutation tests for the null hypothesis that the two-dimensional predictor is not associated with the outcome variable (adjusting for confounders).
Author: Lu Bai [aut],
Scott Bartell [aut, cre] ,
Robin Bliss [aut],
Veronica Vieira [aut]
Maintainer: Scott Bartell <sbartell@uci.edu>
Diff between MapGAM versions 1.3 dated 2023-07-15 and 1.3-1 dated 2025-09-03
ChangeLog | 10 ++ DESCRIPTION | 30 ++++-- MD5 | 20 ++-- R/MapGAM.version.R | 26 ++--- R/gamcox.R | 220 ++++++++++++++++++++++----------------------- R/gamcox.fit.R | 161 ++++++++++++++++----------------- build/partial.rdb |binary man/MapGAM-package.Rd | 14 +- man/modgam.Rd | 23 ++-- man/plot.modgam.Rd | 2 man/sampcont.Rd | 242 +++++++++++++++++++++++++------------------------- 11 files changed, 390 insertions(+), 358 deletions(-)
Title: Fuzzy String Matching
Description: Fuzzy string matching implementation of the 'fuzzywuzzy' <https://github.com/seatgeek/fuzzywuzzy> 'python' package. It uses the Levenshtein Distance <https://en.wikipedia.org/wiki/Levenshtein_distance> to calculate the differences between sequences.
Author: Lampros Mouselimis [aut, cre] ,
SeatGeek Inc [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between fuzzywuzzyR versions 1.0.5 dated 2021-09-11 and 1.0.6 dated 2025-09-03
DESCRIPTION | 18 MD5 | 20 NEWS.md | 10 README.md | 55 - build/vignette.rds |binary inst/doc/functionality_of_fuzzywuzzyR_package.R | 696 ++++++++-------- inst/doc/functionality_of_fuzzywuzzyR_package.html | 863 +++++++++++++-------- man/FuzzExtract.Rd | 42 - man/FuzzMatcher.Rd | 72 - man/FuzzUtils.Rd | 48 - man/SequenceMatcher.Rd | 42 - 11 files changed, 1033 insertions(+), 833 deletions(-)
Title: General Utility Functions for Analysis of Clinical Data
Description: Utility functions to facilitate the import,
the reporting and analysis of clinical data.
Example datasets in 'SDTM' and 'ADaM' format, containing a subset of patients/domains
from the 'CDISC Pilot 01 study' are also available as R datasets to demonstrate
the package functionalities.
Author: Laure Cougnaud [aut, cre],
Michela Pasetto [aut],
Arne De Roeck [rev] ,
Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>
Diff between clinUtils versions 0.2.0 dated 2024-05-17 and 0.2.1 dated 2025-09-03
DESCRIPTION | 10 MD5 | 16 R/knitPrintListObjects.R | 2 build/vignette.rds |binary data/dataADaMCDISCP01.RData |binary data/dataSDTMCDISCP01.RData |binary inst/NEWS | 2 inst/doc/clinUtils-vignette.html | 1177 +++++++++++++++++++++------------------ man/knitPrintListObjects.Rd | 2 9 files changed, 669 insertions(+), 540 deletions(-)
Title: Tensor-Train Decomposition
Description: Tensor-train is a compact representation for higher-order tensors. Some algorithms for performing tensor-train decomposition are available such as TT-SVD, TT-WOPT, and TT-Cross. For the details of the algorithms, see I. V. Oseledets (2011) <doi:10.1137/090752286>, Yuan Longao, et al (2017) <doi:10.48550/arXiv.1709.02641>, I. V. Oseledets (2010) <doi:10.1016/j.laa.2009.07.024>.
Author: Koki Tsuyuzaki [aut, cre],
Manabu Ishii [aut],
Itoshi Nikaido [aut]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
This is a re-admission after prior archival of version 1.0.1 dated 2021-05-18
Diff between ttTensor versions 1.0.1 dated 2021-05-18 and 1.0.2 dated 2025-09-03
ttTensor-1.0.1/ttTensor/README.md |only ttTensor-1.0.2/ttTensor/DESCRIPTION | 14 ++++---- ttTensor-1.0.2/ttTensor/LICENSE |only ttTensor-1.0.2/ttTensor/MD5 | 24 ++++++++----- ttTensor-1.0.2/ttTensor/NAMESPACE | 6 ++- ttTensor-1.0.2/ttTensor/R/TTCross.R | 2 - ttTensor-1.0.2/ttTensor/R/ttTensor-internal.R | 16 +++++---- ttTensor-1.0.2/ttTensor/R/ttTensor-sparse.R |only ttTensor-1.0.2/ttTensor/build/partial.rdb |binary ttTensor-1.0.2/ttTensor/inst/NEWS | 6 +++ ttTensor-1.0.2/ttTensor/man/TTCross.Rd | 31 +++++++++--------- ttTensor-1.0.2/ttTensor/man/as_sptensor.Rd |only ttTensor-1.0.2/ttTensor/man/dtensor.Rd |only ttTensor-1.0.2/ttTensor/man/unfold.Rd |only ttTensor-1.0.2/ttTensor/tests/testthat.R | 1 ttTensor-1.0.2/ttTensor/tests/testthat/test_TTCross.R | 1 16 files changed, 58 insertions(+), 43 deletions(-)
Title: Latent Order Logistic Graph Models
Description: Estimation of Latent Order Logistic (LOLOG) Models for Networks.
LOLOGs are a flexible and fully general class of statistical graph models.
This package provides functions for performing MOM, GMM and variational
inference. Visual diagnostics and goodness of fit metrics are provided.
See Fellows (2018) <doi:10.48550/arXiv.1804.04583> for a detailed description of the methods.
Author: Ian E. Fellows [aut, cre],
Mark S. Handcock [ctb]
Maintainer: Ian E. Fellows <ian@fellstat.com>
Diff between lolog versions 1.3.1 dated 2023-12-07 and 1.3.2 dated 2025-09-03
DESCRIPTION | 15 +++-- MD5 | 56 ++++++++++----------- R/binary-net.R | 4 - R/inline.R | 9 ++- R/lolog.R | 20 ++++--- R/roxygen.R | 6 +- R/zzz.R | 2 build/vignette.rds |binary inst/doc/lolog-ergm.R | 6 +- inst/doc/lolog-ergm.Rmd | 8 +-- inst/doc/lolog-ergm.pdf |binary inst/doc/lolog-introduction.R | 90 +++++++++++++++++------------------ inst/doc/lolog-introduction.pdf |binary inst/include/Stats.h | 22 +++++++- man/inlineLologPlugin.Rd | 6 +- man/lolog-terms.Rd | 6 +- man/plot.Rcpp_DirectedNet.Rd | 2 man/plot.Rcpp_UndirectedNet.Rd | 2 man/plot.lologGmm.Rd | 2 src/StatController.cpp | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test-BinaryNet.R | 2 tests/testthat/test-Cpp.R | 3 - tests/testthat/test-inline.R | 3 - tests/testthat/test-likelihood.R | 2 tests/testthat/test-lolog-fit.R | 1 tests/testthat/test-model-creation.R | 1 tests/testthat/test-stats.R | 9 ++- vignettes/lolog-ergm.Rmd | 8 +-- 29 files changed, 155 insertions(+), 131 deletions(-)
Title: Loading Data from 'Google Ads API'
Description: Interface for loading data from 'Google Ads API',
see <https://developers.google.com/google-ads/api/docs/start>.
Package provide function for authorization and loading reports.
Author: Alexey Seleznev [aut, cre] ,
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rgoogleads versions 0.12.0 dated 2025-01-10 and 0.13.3 dated 2025-09-03
DESCRIPTION | 11 - MD5 | 22 +-- NAMESPACE | 2 NEWS.md | 13 ++ R/gads_check_errors.R | 204 ++++++++++++++++----------------- R/gads_get_accessible_customers.R | 2 R/gads_utils.R | 8 - R/zzz.R | 2 inst/doc/migrate_from_radrowds_us.html | 12 - inst/doc/migrate_from_radwords_ru.html | 12 - man/gads_deauth.Rd | 4 man/gads_get_accessible_customers.Rd | 3 12 files changed, 151 insertions(+), 144 deletions(-)
Title: Plackett-Luce Models for Rankings
Description: Functions to prepare rankings data and fit the Plackett-Luce model
jointly attributed to Plackett (1975) <doi:10.2307/2346567> and Luce
(1959, ISBN:0486441369). The standard Plackett-Luce model is generalized
to accommodate ties of any order in the ranking. Partial rankings, in which
only a subset of items are ranked in each ranking, are also accommodated in
the implementation. Disconnected/weakly connected networks implied by the
rankings may be handled by adding pseudo-rankings with a hypothetical item.
Optionally, a multivariate normal prior may be set on the log-worth
parameters and ranker reliabilities may be incorporated as proposed by
Raman and Joachims (2014) <doi:10.1145/2623330.2623654>. Maximum a
posteriori estimation is used when priors are set. Methods are provided to
estimate standard errors or quasi-standard errors for inference as well as
to fit Plackett-Luce trees. See the package website or vignette for further
details.
Author: Heather Turner [aut, cre] ,
Ioannis Kosmidis [aut] ,
David Firth [aut] ,
Jacob van Etten [ctb]
Maintainer: Heather Turner <ht@heatherturner.net>
Diff between PlackettLuce versions 0.4.3 dated 2023-06-16 and 0.4.4 dated 2025-09-03
DESCRIPTION | 19 +- MD5 | 74 ++++---- NAMESPACE | 1 NEWS.md | 5 R/PlackettLuce-package.R | 91 +++++----- R/adjacency.R | 100 +++++------ R/anova.R | 5 R/pltree.R | 2 R/preflib.R | 4 R/qvcalc.PlackettLuce.R | 176 +++++++++---------- R/rankings.R | 2 README.md | 7 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Overview.R | 310 ++++++++++++++++++----------------- inst/doc/Overview.Rmd | 27 ++- inst/doc/Overview.html | 88 +++++---- inst/doc/PLADMM.html | 13 - inst/extdata/shirt.soc |only inst/extdata/sushi.soc |only man/PlackettLuce-package.Rd | 31 +++ man/adjacency.Rd | 2 man/figures/always-loses-1.png |binary man/figures/qv-1.png |binary man/pltree.Rd | 2 man/preflib.Rd | 4 man/qvcalc.PlackettLuce.Rd | 2 man/rankings.Rd | 2 tests/testthat/helper.R | 2 tests/testthat/test-adherence.R | 2 tests/testthat/test-admm.R | 42 ++-- tests/testthat/test-algorithms.R | 2 tests/testthat/test-log-likelihood.R | 7 vignettes/Overview.Rmd | 27 ++- vignettes/nascar_timings.rds |binary vignettes/netflix_timings.rds |binary vignettes/pltree.png |binary vignettes/sushi_timings.rds |binary vignettes/tshirt_timings.rds |binary 39 files changed, 575 insertions(+), 474 deletions(-)
Title: Distributed Online Covariance Matrix Tests
Description: Distributed Online Covariance Matrix Tests 'Docovt' is a powerful tool designed to efficiently process and analyze distributed datasets. It enables users to perform covariance matrix tests in an online, distributed manner, making it highly suitable for large-scale data analysis. By leveraging advanced computational techniques, 'Docovt' ensures robust and scalable solutions for statistical analysis, particularly in scenarios where data is dispersed across multiple nodes or sources. This package is ideal for researchers and practitioners working with high-dimensional data, providing a flexible and efficient framework for covariance matrix estimation and hypothesis testing. The philosophy of 'Docovt' is described in Guo G.(2025) <doi:10.1016/j.physa.2024.130308>.
Author: Guangbao Guo [aut, cre] ,
Congfan Zhang [aut]
Maintainer: Guangbao Guo <ggb11111111@163.com>
Diff between Docovt versions 0.2 dated 2025-06-29 and 0.3 dated 2025-09-03
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++++++- R/COVID19.R |only R/corneal.R |only R/miRNA.R |only data |only man/COVID19.Rd |only man/corneal.Rd |only man/miRNA.Rd |only 9 files changed, 15 insertions(+), 5 deletions(-)
Title: Self-Controlled Case Series
Description: Execute the self-controlled case series (SCCS) design using observational
data in the OMOP Common Data Model. Extracts all necessary data from the database and
transforms it to the format required for SCCS. Age and season can be modeled
using splines assuming constant hazard within calendar months. Event-dependent
censoring of the observation period can be corrected for. Many exposures can be
included at once (MSCCS), with regularization on all coefficients except for the
exposure of interest. Includes diagnostics for all major assumptions of the SCCS.
Author: Martijn Schuemie [aut, cre],
Patrick Ryan [aut],
Trevor Shaddox [aut],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SelfControlledCaseSeries versions 6.0.1 dated 2025-07-15 and 6.1.0 dated 2025-09-03
DESCRIPTION | 10 ++++---- MD5 | 36 ++++++++++++++--------------- NEWS.md | 17 +++++++++++++ R/DataLoadingSaving.R | 1 R/Export.R | 7 ++--- R/ModelFitting.R | 47 ++++++++++++++++++++++---------------- R/SettingsObjects.R | 11 ++++++++ README.md | 5 ++-- inst/doc/MultipleAnalyses.pdf |binary inst/doc/ResultsSchema.Rmd | 2 - inst/doc/ResultsSchema.pdf |binary inst/doc/SingleStudies.pdf |binary man/createAgeCovariateSettings.Rd | 4 +-- man/createFitSccsModelArgs.Rd | 8 ++++++ man/fitSccsModel.Rd | 5 ---- man/hasCalendarTimeEffect.Rd | 4 +-- man/hasSeasonality.Rd | 4 +-- tests/testthat/test-eunomia.R | 11 ++++++++ vignettes/ResultsSchema.Rmd | 2 - 19 files changed, 111 insertions(+), 63 deletions(-)
More information about SelfControlledCaseSeries at CRAN
Permanent link
Title: SAE using HB Twofold Subarea Model under Beta Distribution
Description: Estimates area and subarea level proportions using the Small Area Estimation (SAE) Twofold Subarea Model with a hierarchical Bayesian (HB) approach under Beta distribution. A number of simulated datasets generated for illustration purposes are also included. The 'rstan' package is employed to estimate parameters via the Hamiltonian Monte Carlo and No U-Turn Sampler algorithm. The model-based estimators include the HB mean, the variation of the mean, and quantiles. For references, see Rao and Molina (2015) <doi:10.1002/9781118735855>, Torabi and Rao (2014) <doi:10.1016/j.jmva.2014.02.001>, Leyla Mohadjer et al.(2007) <http://www.asasrms.org/Proceedings/y2007/Files/JSM2007-000559.pdf>, Erciulescu et al.(2019) <doi:10.1111/rssa.12390>, and Yudasena (2024).
Author: Nasya Zahira Putri [aut, cre],
Cucu Sumarni [aut],
Rizal Fauziarochman Yudasena [aut]
Maintainer: Nasya Zahira Putri <nasyazp28@gmail.com>
Diff between saeHB.TF.beta versions 0.1.0 dated 2025-07-14 and 0.2.0 dated 2025-09-03
DESCRIPTION | 16 - MD5 | 33 +- NAMESPACE | 8 R/explore.R |only README.md | 144 +++++++++-- inst/doc/saeHB-Twofold-Beta.R | 79 +++++- inst/doc/saeHB-Twofold-Beta.Rmd | 133 ++++++++-- inst/doc/saeHB-Twofold-Beta.html | 484 +++++++++++++++---------------------- inst/stan/saeHB_TF_beta.stan | 5 inst/stan/saeHB_TF_beta_NA.stan | 7 man/explore.Rd |only man/figures |only src/stanExports_saeHB_TF_beta.h | 337 +++++++++---------------- src/stanExports_saeHB_TF_beta_NA.h | 467 ++++++++++++----------------------- tests |only vignettes/saeHB-Twofold-Beta.Rmd | 133 ++++++++-- 16 files changed, 955 insertions(+), 891 deletions(-)
Title: Assess Mating Potential in Space and Time
Description: Simulate, manage, visualize, and analyze spatially and temporally
explicit datasets of mating potential. Implements methods to calculate
synchrony, proximity, and compatibility.Synchrony calculations are based on
methods described in Augspurger (1983) <doi:10.2307/2387650>,
Kempenaers (1993) <doi:10.2307/3676415>, Ison et al. (2014)
<doi:10.3732/ajb.1300065>, and variations on these, as described.
Author: Stuart Wagenius [cre, aut],
Danny Hanson [aut],
Amy Waananen [aut]
Maintainer: Stuart Wagenius <stuart.wagenius@gmail.com>
Diff between mateable versions 0.3.2 dated 2023-02-04 and 0.3.3 dated 2025-09-03
DESCRIPTION | 10 - MD5 | 32 ++-- R/mateable.R | 6 R/plot3DScene.R | 2 R/plot3Dpotential.R | 2 R/plotPotential.R | 2 R/spatialDataFunctions.R | 4 README.md | 4 build/vignette.rds |binary inst/doc/investigateMatingScene.R | 8 - inst/doc/investigateMatingScene.html | 244 +++++++++++++++++------------------ man/kNearNeighbors.Rd | 2 man/mateable-package.Rd | 4 man/pairDist.Rd | 2 man/plot3DPotential.Rd | 2 man/plot3DScene.Rd | 2 man/plotPotential.Rd | 2 17 files changed, 166 insertions(+), 162 deletions(-)
Title: Kernel Based Gradient Matching for Parameter Inference in
Ordinary Differential Equations
Description: The kernel ridge regression and the gradient matching algorithm proposed in Niu et al. (2016) <https://proceedings.mlr.press/v48/niu16.html> and the warping algorithm proposed in Niu et al. (2017) <DOI:10.1007/s00180-017-0753-z> are implemented for parameter inference in differential equations. Four schemes are provided for improving parameter estimation in odes by using the odes regularisation and warping.
Author: Mu Niu [aut, cre]
Maintainer: Mu Niu <mu.niu@glasgow.ac.uk>
Diff between KGode versions 1.0.4 dated 2022-08-19 and 1.0.5 dated 2025-09-03
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- R/WarpSin.r | 4 ++-- R/kernel.r | 6 +++--- R/mlp.r | 4 ++-- R/ode.r | 4 ++-- R/rbf.r | 4 ++-- R/rk3g.r | 4 ++-- R/rkhs.r | 4 ++-- man/Kernel.Rd | 4 ++-- man/MLP.Rd | 4 ++-- man/RBF.Rd | 4 ++-- man/Warp.Rd | 4 ++-- man/ode.Rd | 4 ++-- man/rkg3.Rd | 4 ++-- man/rkhs.Rd | 4 ++-- 16 files changed, 48 insertions(+), 48 deletions(-)
Title: Extended Two-Way Fixed Effects
Description: Convenience functions for implementing extended two-way
fixed effect regressions a la Wooldridge (2021, 2023)
<doi:10.2139/ssrn.3906345>, <doi:10.1093/ectj/utad016>.
Author: Grant McDermott [aut, cre] ,
Frederic Kluser [ctb]
Maintainer: Grant McDermott <gmcd@amazon.com>
This is a re-admission after prior archival of version 0.5.0 dated 2024-12-16
Diff between etwfe versions 0.5.0 dated 2024-12-16 and 0.6.0 dated 2025-09-03
DESCRIPTION | 13 MD5 | 34 NEWS.md | 40 R/emfx.R | 232 ++-- R/etwfe.R | 356 ++++-- R/plot.R | 2 README.md | 2 build/vignette.rds |binary inst/doc/etwfe.Rmd | 4 inst/doc/etwfe.html | 2403 ++++++++++++++++++++++----------------------- inst/tinytest/test_baker.R | 258 +++- inst/tinytest/test_emfx.R | 643 +++++++++--- inst/tinytest/test_etwfe.R | 562 ++++++++-- inst/tinytest/test_xvar.R | 590 ++++++++--- man/emfx.Rd | 35 man/etwfe.Rd | 34 man/plot.emfx.Rd | 14 vignettes/etwfe.Rmd | 4 18 files changed, 3254 insertions(+), 1972 deletions(-)
Title: 'a la Carte' on Text (ConText) Embedding Regression
Description: A fast, flexible and transparent framework to estimate context-specific word and short document embeddings using the 'a la carte'
embeddings approach developed by Khodak et al. (2018) <doi:10.48550/arXiv.1805.05388> and evaluate hypotheses about covariate effects on embeddings using
the regression framework developed by Rodriguez et al. (2021)<doi:10.1017/S0003055422001228>. New version of the package applies a new estimator to measure the distance between word embeddings as described in Green et al. (2025) <doi:10.1017/pan.2024.22>.
Author: Pedro L. Rodriguez [aut, cph] ,
Arthur Spirling [aut] ,
Brandon Stewart [aut] ,
Christopher Barrie [ctb] ,
Sofia Avila [cre, aut]
Maintainer: Sofia Avila <sofiaavila@princeton.edu>
Diff between conText versions 1.4.3 dated 2023-02-09 and 3.0.0 dated 2025-09-03
conText-1.4.3/conText/man/bootstrap_ols.Rd |only conText-1.4.3/conText/man/permute_ols.Rd |only conText-1.4.3/conText/vignettes/nns_ratio.png |only conText-3.0.0/conText/DESCRIPTION | 40 conText-3.0.0/conText/MD5 | 73 - conText-3.0.0/conText/NAMESPACE | 20 conText-3.0.0/conText/R/classes.R | 3 conText-3.0.0/conText/R/compute_transform.R | 7 conText-3.0.0/conText/R/conText-package.R |only conText-3.0.0/conText/R/conText.R | 375 +++++---- conText-3.0.0/conText/R/contrast_nns.R | 2 conText-3.0.0/conText/R/cos_sim.R | 2 conText-3.0.0/conText/R/dem.R | 1 conText-3.0.0/conText/R/feature_sim.R | 4 conText-3.0.0/conText/R/fem.R | 9 conText-3.0.0/conText/R/get_grouped_similarity.R |only conText-3.0.0/conText/R/get_nns.R | 10 conText-3.0.0/conText/R/get_nns_ratio.R | 6 conText-3.0.0/conText/R/get_seq_cos_sim.R | 1 conText-3.0.0/conText/R/globals.R | 3 conText-3.0.0/conText/R/nns.R | 4 conText-3.0.0/conText/R/plot_nns_ratio.R | 6 conText-3.0.0/conText/R/zzz.R |only conText-3.0.0/conText/README.md | 11 conText-3.0.0/conText/build/partial.rdb |only conText-3.0.0/conText/build/vignette.rds |binary conText-3.0.0/conText/inst/doc/quickstart.R | 115 +- conText-3.0.0/conText/inst/doc/quickstart.Rmd | 92 +- conText-3.0.0/conText/inst/doc/quickstart.html | 833 ++++++++++---------- conText-3.0.0/conText/man/compute_transform.Rd | 4 conText-3.0.0/conText/man/conText-package.Rd |only conText-3.0.0/conText/man/conText.Rd | 40 conText-3.0.0/conText/man/contrast_nns.Rd | 2 conText-3.0.0/conText/man/feature_sim.Rd | 4 conText-3.0.0/conText/man/fem.Rd | 4 conText-3.0.0/conText/man/get_grouped_similarity.Rd |only conText-3.0.0/conText/man/get_nns.Rd | 4 conText-3.0.0/conText/man/get_nns_ratio.Rd | 6 conText-3.0.0/conText/man/get_seq_cos_sim.Rd | 1 conText-3.0.0/conText/man/plot_nns_ratio.Rd | 6 conText-3.0.0/conText/man/run_ols.Rd | 4 conText-3.0.0/conText/vignettes/quickstart.Rmd | 92 +- 42 files changed, 1035 insertions(+), 749 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Yoonkyoung Jeon [aut],
Jaehun Shon [aut],
Hyojong Myung [aut],
Hyungwoo Jo [aut],
Sungho Choi [aut],
Jaewoong Heo [aut],
Mingu Jee [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.3.16 dated 2025-08-20 and 1.3.17 dated 2025-09-03
DESCRIPTION | 8 MD5 | 26 NAMESPACE | 5 NEWS.md | 14 R/cox2.R | 258 +++++-- R/gee.R | 54 + R/glmshow.R | 163 +++- R/label.R | 173 ++++- R/lmer.R | 48 + build/vignette.rds |binary inst/doc/jstable.R | 4 inst/doc/jstable.html | 676 ++++++++++---------- inst/doc/jstable_competing_risk_analysis.html | 82 +- inst/doc/jstable_options.html | 848 +++++++++++++------------- 14 files changed, 1384 insertions(+), 975 deletions(-)
Title: Tools for Managing Imaging FlowCytobot (IFCB) Data
Description: A comprehensive suite of tools for managing, processing, and
analyzing data from the IFCB. I R FlowCytobot ('iRfcb') supports
quality control, geospatial analysis, and preparation of IFCB data for
publication in databases like <https://www.gbif.org>,
<https://www.obis.org>, <https://emodnet.ec.europa.eu/en>,
<https://shark.smhi.se/>, and <https://www.ecotaxa.org>. The package
integrates with the MATLAB 'ifcb-analysis' tool, which is described in
Sosik and Olson (2007) <doi:10.4319/lom.2007.5.204>, and provides
features for working with raw, manually classified, and machine
learning–classified image datasets. Key functionalities include image
extraction, particle size distribution analysis, taxonomic data
handling, and biomass concentration calculations, essential for
plankton research.
Author: Anders Torstensson [aut, cre] ,
Kendra Hayashi [ctb] ,
Jamie Enslein [ctb],
Raphael Kudela [ctb] ,
Alle Lie [ctb] ,
Jayme Smith [ctb] ,
DTO-BioFlow [fnd] ,
SBDI [fnd]
Maintainer: Anders Torstensson <anders.torstensson@smhi.se>
Diff between iRfcb versions 0.5.1 dated 2025-04-22 and 0.5.2 dated 2025-09-03
DESCRIPTION | 58 ++++++++----- MD5 | 58 ++++++------- NEWS.md | 8 + R/ifcb_download_test_data.R | 89 ++++++++++++--------- R/ifcb_extract_biovolumes.R | 46 +++++++--- R/ifcb_get_mat_variable.R | 2 R/ifcb_is_near_land.R | 2 R/ifcb_read_features.R | 4 R/ifcb_summarize_biovolumes.R | 8 + R/zzz.R | 11 ++ build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/doc/a-general-tutorial.html | 4 inst/doc/qc-tutorial.html | 4 man/ifcb_download_test_data.Rd | 12 ++ man/ifcb_extract_biovolumes.Rd | 3 man/ifcb_get_mat_variable.Rd | 2 man/ifcb_is_near_land.Rd | 2 man/ifcb_summarize_biovolumes.Rd | 3 tests/testthat/helper.R | 15 +++ tests/testthat/test-ifcb_download_dashboard_data.R | 3 tests/testthat/test-ifcb_download_test_data.R | 6 + tests/testthat/test-ifcb_extract_biovolumes.R | 17 ++-- tests/testthat/test-ifcb_get_runtime.R | 3 tests/testthat/test-ifcb_is_diatom.R | 6 - tests/testthat/test-ifcb_is_near_land.R | 3 tests/testthat/test-ifcb_match_taxa_names.R | 6 - tests/testthat/test-ifcb_prepare_whoi_plankton.R | 3 tests/testthat/test-ifcb_summarize_biovolumes.R | 6 - 30 files changed, 257 insertions(+), 131 deletions(-)
Title: Utilities for Working with Google APIs
Description: Provides utilities for working with Google APIs
<https://developers.google.com/apis-explorer>. This includes
functions and classes for handling common credential types and for
preparing, executing, and processing HTTP requests.
Author: Jennifer Bryan [aut, cre] ,
Craig Citro [aut],
Hadley Wickham [aut] ,
Google Inc [cph],
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between gargle versions 1.5.2 dated 2023-07-20 and 1.6.0 dated 2025-09-03
DESCRIPTION | 17 MD5 | 176 ++-- NEWS.md | 54 - R/AuthState-class.R | 273 +++--- R/Gargle-class.R | 429 +++++----- R/cred_funs.R | 26 R/credentials_app_default.R | 6 R/credentials_external_account.R | 259 +++--- R/credentials_gce.R | 284 +++--- R/credentials_service_account.R | 29 R/credentials_user_oauth2.R | 12 R/gargle-package.R | 2 R/gargle_oauth_client.R | 37 R/oauth-cache.R | 26 R/oauth-init.R | 40 R/request_develop.R | 26 R/request_make.R | 31 R/request_retry.R | 118 +- R/response_process.R | 99 +- R/roxygen-templates.R | 207 ++-- R/secret.R | 18 R/utils-ui.R | 63 - R/utils.R | 30 R/zzz.R | 3 README.md | 6 build/vignette.rds |binary inst/discovery-doc-ingest/discover-discovery.R | 2 inst/discovery-doc-ingest/drive-example.R | 8 inst/discovery-doc-ingest/ingest-functions.R | 20 inst/doc/auth-from-web.R | 20 inst/doc/auth-from-web.Rmd | 14 inst/doc/auth-from-web.html | 11 inst/doc/gargle-auth-in-client-package.R | 282 +++--- inst/doc/gargle-auth-in-client-package.Rmd | 4 inst/doc/gargle-auth-in-client-package.html | 7 inst/doc/get-api-credentials.R | 44 - inst/doc/get-api-credentials.Rmd | 16 inst/doc/get-api-credentials.html | 5 inst/doc/how-gargle-gets-tokens.R | 302 +++---- inst/doc/how-gargle-gets-tokens.Rmd | 16 inst/doc/how-gargle-gets-tokens.html | 7 inst/doc/non-interactive-auth.R | 163 --- inst/doc/non-interactive-auth.Rmd | 19 inst/doc/non-interactive-auth.html | 5 inst/doc/oauth-client-not-app.R | 102 +- inst/doc/oauth-client-not-app.html | 5 inst/doc/request-helper-functions.R | 112 +- inst/doc/request-helper-functions.html | 1 inst/doc/troubleshooting.R | 48 - inst/doc/troubleshooting.html | 5 man/gargle_oauth_client_from_json.Rd | 2 man/gargle_secret.Rd | 2 man/gce_instance_service_accounts.Rd | 2 man/request_make.Rd | 2 man/request_retry.Rd | 2 man/response_process.Rd | 2 tests/spelling.R | 3 tests/testthat/_snaps/credentials_service_account.md | 10 tests/testthat/_snaps/request_retry.md | 38 tests/testthat/_snaps/response_process.md | 31 tests/testthat/fixtures/drive-files-get-nonexistent-file-id_404.R | 5 tests/testthat/fixtures/sheets-spreadsheets-get-api-key-not-enabled_403.R | 11 tests/testthat/fixtures/sheets-spreadsheets-get-bad-field-mask_400.R | 5 tests/testthat/fixtures/sheets-spreadsheets-get-nonexistent-range_400.R | 5 tests/testthat/fixtures/sheets-spreadsheets-get-nonexistent-sheet-id_404.R | 3 tests/testthat/fixtures/sheets-spreadsheets-get-quota-exceeded-readgroup_429.R | 5 tests/testthat/fixtures/sheets-spreadsheets-get-quota-exceeded-readgroup_429.rds |binary tests/testthat/fixtures/sheets-spreadsheets-get-service-disabled.R |only tests/testthat/fixtures/sheets-spreadsheets-get-service-disabled_403.rds |only tests/testthat/helper.R | 8 tests/testthat/test-AuthState-class.R | 54 + tests/testthat/test-Gargle-class.R | 12 tests/testthat/test-assets.R | 7 tests/testthat/test-cred_funs.R | 10 tests/testthat/test-credentials_app_default.R | 24 tests/testthat/test-credentials_byo_oauth2.R | 6 tests/testthat/test-credentials_service_account.R | 6 tests/testthat/test-gargle_oauth_client.R | 17 tests/testthat/test-oauth-cache.R | 12 tests/testthat/test-oauth-refresh.R | 7 tests/testthat/test-request_develop.R | 6 tests/testthat/test-request_retry.R | 65 + tests/testthat/test-response_process.R | 14 tests/testthat/test-utils-ui.R | 19 tests/testthat/test-utils.R | 8 vignettes/auth-from-web.Rmd | 14 vignettes/gargle-auth-in-client-package.Rmd | 4 vignettes/get-api-credentials.Rmd | 16 vignettes/how-gargle-gets-tokens.Rmd | 16 vignettes/non-interactive-auth.Rmd | 19 90 files changed, 2181 insertions(+), 1780 deletions(-)
Title: Pharmacometric Modeling
Description: Facilitate Pharmacokinetic (PK) and Pharmacodynamic (PD) modeling
and simulation with powerful tools for Nonlinear Mixed-Effects (NLME)
modeling. The package provides access to the same advanced Maximum Likelihood
algorithms used by the NLME-Engine in the Phoenix platform. These tools support
a range of analyses, from parametric methods to individual and pooled data, and
support integrated use within the Pirana pharmacometric workbench
<doi:10.1002/psp4.70067>. Execution is supported both locally or on
remote machines.
Author: James Craig [aut, cre],
Michael Tomashevskiy [aut],
Vitalii Nazarov [aut],
Shuhua Hu [ctb],
Soltanshahi Fred [aut],
Certara USA, Inc. [cph, fnd]
Maintainer: James Craig <james.craig@certara.com>
Diff between Certara.RsNLME versions 3.1.0 dated 2025-08-22 and 3.1.0.1 dated 2025-09-03
DESCRIPTION | 6 +- MD5 | 90 ++++++++++++++++++------------------- R/SimpleNlmeJob.R | 2 R/acceptAllEffects.R | 2 R/addTablesToColumnMapping.R | 2 R/bootstrap.r | 2 R/checkHostParams.R | 2 R/copyModel.R | 2 R/covariateModel.R | 2 R/create_model_from_metamodel.R | 2 R/create_model_info.R | 2 R/extract_mmdl.R | 2 R/fitmodel.R | 2 R/getThetas.R | 2 R/job.r | 2 R/obtain_NLMELicense.R | 4 - R/profile_estimation.r | 4 - R/run_metamodel.R | 4 - R/shotgunSearch.R | 2 R/sortfit.R | 2 R/stepwiseSearch.R | 2 R/vpc.r | 6 +- man/NlmeJobStatus.Rd | 2 man/NlmeVpcParams-class.Rd | 2 man/RunProfilePertubation.Rd | 2 man/acceptAllEffects.Rd | 2 man/bootstrap.Rd | 2 man/checkHostParams.Rd | 2 man/copyModel.Rd | 2 man/covariateModel.Rd | 2 man/createModelInfo.Rd | 2 man/create_model_from_metamodel.Rd | 2 man/extract_mmdl.Rd | 2 man/fitmodel.Rd | 2 man/getThetas.Rd | 2 man/obtain_NLMELicense.Rd | 2 man/parse_NLMEHosts.Rd | 2 man/print.SimpleNlmeJob.Rd | 2 man/profilePertubate.Rd | 2 man/remove_NLMELicense.Rd | 2 man/run_metamodel.Rd | 2 man/shotgunSearch.Rd | 2 man/simmodel.Rd | 2 man/sortfit.Rd | 2 man/stepwiseSearch.Rd | 2 man/vpcmodel.Rd | 2 46 files changed, 97 insertions(+), 97 deletions(-)
More information about Certara.RsNLME at CRAN
Permanent link
Title: Simulation Education
Description: Contains various functions to be used for simulation education,
including simple Monte Carlo simulation functions, queueing simulation
functions, variate generation functions capable of producing independent
streams and antithetic variates, functions for illustrating random variate
generation for various discrete and continuous distributions, and functions
to compute time-persistent statistics. Also contains functions for
visualizing: event-driven details of a single-server queue model; a Lehmer
random number generator; variate generation via acceptance-rejection; and
of generating a non-homogeneous Poisson process via thinning. Also
contains two queueing data sets (one fabricated, one real-world) to
facilitate input modeling. More details on the use of these functions can
be found in Lawson and Leemis (2015) <doi:10.1109/WSC.2017.8248124>, in
Kudlay, Lawson, and Leemis (2020) <doi:10.1109/WSC48552.2020.9384010>, and
in Lawson and Leemis (2021) <doi:10.1109/WSC52266.2 [...truncated...]
Author: Barry Lawson [aut, cre, cph],
Larry Leemis [aut],
Vadim Kudlay [aut]
Maintainer: Barry Lawson <blawson@bates.edu>
Diff between simEd versions 2.0.1 dated 2023-11-26 and 2.0.2 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 50 +++++++++++++++++++++++++------------------------- NEWS.md | 3 +++ R/generators.R | 2 +- R/simEd-package.R | 4 ++-- build/partial.rdb |binary man/msq.Rd | 2 +- man/simEd-package.Rd | 13 ++++++++++++- man/ssq.Rd | 2 +- man/ssqvis.Rd | 2 +- man/vbeta.Rd | 8 ++++---- man/vbinom.Rd | 8 ++++---- man/vcauchy.Rd | 8 ++++---- man/vchisq.Rd | 8 ++++---- man/vexp.Rd | 8 ++++---- man/vfd.Rd | 8 ++++---- man/vgamma.Rd | 8 ++++---- man/vgeom.Rd | 8 ++++---- man/vlnorm.Rd | 8 ++++---- man/vlogis.Rd | 8 ++++---- man/vnbinom.Rd | 8 ++++---- man/vnorm.Rd | 8 ++++---- man/vpois.Rd | 8 ++++---- man/vt.Rd | 8 ++++---- man/vunif.Rd | 8 ++++---- man/vweibull.Rd | 8 ++++---- 26 files changed, 114 insertions(+), 100 deletions(-)
Title: Origin Estimation for Propagation Processes on Complex Networks
Description: Performs network-based source estimation. Different approaches are available: effective distance median, recursive backtracking, and centrality-based source estimation. Additionally, we provide public transportation network data as well as methods for data preparation, source estimation performance analysis and visualization.
Author: Juliane Manitz [aut, cre],
Jonas Harbering [ctb],
Jun Li [ctb]
Maintainer: Juliane Manitz <r@manitz.org>
Diff between NetOrigin versions 1.1-6 dated 2023-09-04 and 1.1-7 dated 2025-09-02
DESCRIPTION | 8 +- MD5 | 20 ++--- R/0_helper_net.r | 194 ++++++++++++++++++++++++------------------------- R/NetOrigin.r | 2 R/origin_helper.r | 6 - R/origin_methods.r | 2 man/NetOrigin.Rd | 8 ++ man/analyze_ptn.Rd | 2 man/origin-methods.Rd | 6 - man/origin_multiple.Rd | 2 man/plot_ptn.Rd | 4 - 11 files changed, 131 insertions(+), 123 deletions(-)
Title: Browse Over Longitudinal Data Graphically and Analytically in R
Description: Provides a framework of tools to summarise, visualise, and explore
longitudinal data. It builds upon the tidy time series data frames used in the
'tsibble' package, and is designed to integrate within the 'tidyverse', and
'tidyverts' (for time series) ecosystems. The methods implemented include
calculating features for understanding longitudinal data, including
calculating summary statistics such as quantiles, medians, and numeric ranges,
sampling individual series, identifying individual series representative of a
group, and extending the facet system in 'ggplot2' to facilitate exploration of samples of data. These methods are
fully described in the paper "brolgar: An R package to Browse Over
Longitudinal Data Graphically and Analytically in R", Nicholas Tierney,
Dianne Cook, Tania Prvan (2020) <doi:10.32614/RJ-2022-023>.
Author: Nicholas Tierney [aut, cre] ,
Di Cook [aut] ,
Tania Prvan [aut],
Stuart Lee [ctb],
Earo Wang [ctb]
Maintainer: Nicholas Tierney <nicholas.tierney@gmail.com>
Diff between brolgar versions 1.0.1 dated 2024-05-10 and 1.0.2 dated 2025-09-02
DESCRIPTION | 19 + MD5 | 142 +++++++------- NEWS.md | 5 R/b_summaries.R | 90 ++++----- R/brolgar-package.R | 31 +-- R/data-pisa.R | 60 +++--- R/data-wages-ts.R | 33 +-- R/data-world-height.R | 42 ++-- R/facet-sample.R | 96 ++++------ R/facet-strata.R | 112 +++++------ R/features.R | 68 +++---- R/index-helpers.R | 61 +++--- R/key_slope.R | 70 +++---- R/keys_near.R | 127 ++++++------- R/monotonics.R | 64 +++--- R/n-obs.R | 41 ++-- R/nearests.R | 134 ++++++-------- R/reexports.R | 1 R/sample-frac-n-keys.R | 32 +-- R/stratify-keys.R | 104 +++++----- R/utils.R | 89 ++++----- R/zzz.R | 2 README.md | 11 - build/partial.rdb |only build/vignette.rds |binary inst/WORDLIST | 5 inst/doc/finding-features.R | 26 +- inst/doc/finding-features.html | 4 inst/doc/getting-started.R | 8 inst/doc/id-interesting-obs.html | 4 inst/doc/longitudinal-data-structures.R | 10 - inst/doc/mixed-effects-models.html | 24 +- inst/examples/max_if.R | 8 inst/examples/new-api.R | 104 +++++----- inst/examples/test.R | 210 ++++++++++++---------- man/add_n_obs.Rd | 6 man/brolgar-features.Rd | 4 man/brolgar-package.Rd | 3 man/facet_strata.Rd | 4 man/figures/brolgar-logo.png |only man/heights.Rd | 14 - man/keys_near.tbl_ts.Rd | 4 man/monotonic.Rd | 14 - man/near_between.Rd | 4 man/near_middle.Rd | 4 man/near_quantile.Rd | 8 man/nearests.Rd | 6 man/pisa.Rd | 16 - man/sample-n-frac-keys.Rd | 4 man/stratify_keys.Rd | 14 - man/wages.Rd | 12 - tests/testthat/test-add-longnostic.R | 62 +++--- tests/testthat/test-b-funs.R | 8 tests/testthat/test-facet-sample.R | 34 +-- tests/testthat/test-facet-strata.R | 28 +- tests/testthat/test-feature-diff-summary.R | 29 +-- tests/testthat/test-feature-five-num.R | 9 tests/testthat/test-feature-monotonic.R | 13 - tests/testthat/test-feature-n-obs.R | 3 tests/testthat/test-feature-three-num.R | 6 tests/testthat/test-features-brolgar.R | 62 +++--- tests/testthat/test-features-ranges.R | 6 tests/testthat/test-features-spread.R | 6 tests/testthat/test-filter-n-obs.R | 14 - tests/testthat/test-index-helpers.R | 1 tests/testthat/test-keys-near.R | 38 ++- tests/testthat/test-longnostics.R | 70 +++---- tests/testthat/test-monotonics.R | 11 - tests/testthat/test-nearests.R | 103 +++++----- tests/testthat/test-sample-n-frac-keys.R | 10 - tests/testthat/test-sample-n-frac-multiple-keys.R | 18 - tests/testthat/test-stratify-key.R | 54 ++--- tests/testthat/test-utils.R | 50 ++--- 73 files changed, 1274 insertions(+), 1315 deletions(-)
Title: R Client for the VirusTotal API
Description: Use VirusTotal, a Google service that analyzes files and URLs
for viruses, worms, trojans etc., provides category of the content hosted by a
domain from a variety of prominent services, provides passive DNS information,
among other things. See <https://www.virustotal.com> for more information.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between virustotal versions 0.2.2 dated 2021-11-04 and 0.3.0 dated 2025-09-02
virustotal-0.2.2/virustotal/tests/testthat/virustotal_api_key |only virustotal-0.2.2/virustotal/vignettes/using_virustotal.md |only virustotal-0.3.0/virustotal/DESCRIPTION | 17 virustotal-0.3.0/virustotal/LICENSE | 2 virustotal-0.3.0/virustotal/MD5 | 157 virustotal-0.3.0/virustotal/NAMESPACE | 73 virustotal-0.3.0/virustotal/NEWS.md | 81 virustotal-0.3.0/virustotal/R/domain_report.R | 84 virustotal-0.3.0/virustotal/R/download_file.R |only virustotal-0.3.0/virustotal/R/file_report.R | 80 virustotal-0.3.0/virustotal/R/get_domain_comments.R | 84 virustotal-0.3.0/virustotal/R/get_domain_info.R | 74 virustotal-0.3.0/virustotal/R/get_domain_relationship.R | 76 virustotal-0.3.0/virustotal/R/get_domain_votes.R | 74 virustotal-0.3.0/virustotal/R/get_file_comments.R |only virustotal-0.3.0/virustotal/R/get_file_download_url.R |only virustotal-0.3.0/virustotal/R/get_file_relationships.R |only virustotal-0.3.0/virustotal/R/get_file_upload_url.R |only virustotal-0.3.0/virustotal/R/get_file_votes.R |only virustotal-0.3.0/virustotal/R/get_ip_comments.R | 64 virustotal-0.3.0/virustotal/R/get_ip_info.R | 72 virustotal-0.3.0/virustotal/R/get_ip_votes.R | 66 virustotal-0.3.0/virustotal/R/get_url_comments.R |only virustotal-0.3.0/virustotal/R/get_url_relationships.R |only virustotal-0.3.0/virustotal/R/get_url_votes.R |only virustotal-0.3.0/virustotal/R/ip_report.R | 74 virustotal-0.3.0/virustotal/R/post_comments.R | 100 virustotal-0.3.0/virustotal/R/post_domain_comments.R | 72 virustotal-0.3.0/virustotal/R/post_domain_votes.R | 74 virustotal-0.3.0/virustotal/R/post_file_comments.R |only virustotal-0.3.0/virustotal/R/post_file_votes.R |only virustotal-0.3.0/virustotal/R/post_ip_comments.R | 68 virustotal-0.3.0/virustotal/R/post_ip_votes.R | 68 virustotal-0.3.0/virustotal/R/post_url_comments.R |only virustotal-0.3.0/virustotal/R/post_url_votes.R |only virustotal-0.3.0/virustotal/R/rescan_file.R | 85 virustotal-0.3.0/virustotal/R/scan_file.R | 69 virustotal-0.3.0/virustotal/R/scan_url.R | 68 virustotal-0.3.0/virustotal/R/set_key.R | 50 virustotal-0.3.0/virustotal/R/url_report.R | 115 virustotal-0.3.0/virustotal/R/virustotal.R | 379 +- virustotal-0.3.0/virustotal/README.md | 95 virustotal-0.3.0/virustotal/build/vignette.rds |binary virustotal-0.3.0/virustotal/inst/CITATION | 30 virustotal-0.3.0/virustotal/inst/doc/using_virustotal.R | 95 virustotal-0.3.0/virustotal/inst/doc/using_virustotal.Rmd | 258 - 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Title: Seasonal Trend Decomposition Using Regression
Description: Methods for decomposing seasonal data: STR (a Seasonal-Trend
time series decomposition procedure based on Regression) and Robust STR. In
some ways, STR is similar to Ridge Regression and Robust STR can be related to
LASSO. They allow for multiple seasonal components, multiple linear covariates
with constant, flexible and seasonal influence. Seasonal patterns (for both
seasonal components and seasonal covariates) can be fractional and flexible
over time; moreover they can be either strictly periodic or have a more
complex topology. The methods provide confidence intervals for the estimated
components. The methods can also be used for forecasting.
Author: Alexander Dokumentov [aut] ,
Rob Hyndman [aut, cre]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between stR versions 0.7 dated 2024-07-28 and 0.7.1 dated 2025-09-02
stR-0.7.1/stR/DESCRIPTION | 11 stR-0.7.1/stR/MD5 | 71 - stR-0.7.1/stR/NEWS.md | 4 stR-0.7.1/stR/R/RSTR.R | 287 +++++-- stR-0.7.1/stR/R/STR.R | 541 +++++++++++--- stR-0.7.1/stR/R/cg.R | 9 stR-0.7.1/stR/R/heuristicSTR.R | 153 +++- stR-0.7.1/stR/R/lmSolver.R | 84 +- stR-0.7.1/stR/R/lsmr.R | 119 ++- stR-0.7.1/stR/R/mstsWrapper.R | 112 ++ stR-0.7.1/stR/R/plot.str.R | 176 +++- stR-0.7.1/stR/R/plotBeta.R | 85 +- stR-0.7.1/stR/R/seasadj.R | 9 stR-0.7.1/stR/README.md | 3 stR-0.7.1/stR/build/vignette.rds |binary stR-0.7.1/stR/inst/doc/stRvignette.R | 351 +++------ stR-0.7.1/stR/inst/doc/stRvignette.Rmd | 329 ++++---- stR-0.7.1/stR/inst/doc/stRvignette.html | 277 +++---- stR-0.7.1/stR/inst/extdata |only stR-0.7.1/stR/man/RSTRmodel.Rd | 4 stR-0.7.1/stR/man/STRmodel.Rd | 3 stR-0.7.1/stR/man/figures/README-example-1.png |binary stR-0.7.1/stR/man/figures/README-example-2.png |binary stR-0.7.1/stR/man/heuristicSTR.Rd | 2 stR-0.7.1/stR/tests/testthat/test_STR.R | 865 +++++++++++++++++++---- stR-0.7.1/stR/vignettes/stRvignette.Rmd | 329 ++++---- stR-0.7/stR/tests/testthat/Rplots.pdf |only stR-0.7/stR/vignettes/calls.fit.RDS |only stR-0.7/stR/vignettes/co2.fit.stR.RDS |only stR-0.7/stR/vignettes/co2.fit.tbats.RDS |only stR-0.7/stR/vignettes/elec.fit.2.forecasting.RDS |only stR-0.7/stR/vignettes/elec.fit.RDS |only stR-0.7/stR/vignettes/elec.fit.forecasting.RDS |only stR-0.7/stR/vignettes/gr.fit.2.stR.RDS |only stR-0.7/stR/vignettes/gr.fit.stR.RDS |only stR-0.7/stR/vignettes/logGrOutl.stR.RDS |only stR-0.7/stR/vignettes/logGrOutl.stR.robust.RDS |only stR-0.7/stR/vignettes/taylor.fit.stR.RDS |only 38 files changed, 2555 insertions(+), 1269 deletions(-)
Title: Drawing Survival Curves using 'ggplot2'
Description: Contains the function 'ggsurvplot()' for drawing easily beautiful
and 'ready-to-publish' survival curves with the 'number at risk' table
and 'censoring count plot'. Other functions are also available to plot
adjusted curves for `Cox` model and to visually examine 'Cox' model assumptions.
Author: Alboukadel Kassambara [aut, cre],
Marcin Kosinski [aut],
Przemyslaw Biecek [aut],
Scheipl Fabian [ctb]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between survminer versions 0.5.0 dated 2024-10-30 and 0.5.1 dated 2025-09-02
DESCRIPTION | 8 - MD5 | 54 +++++----- NEWS.md | 16 ++ R/add_ggsurvplot.R | 4 R/ggcoxdiagnostics.R | 8 + R/ggsurvplot_core.R | 33 +++++- R/ggsurvplot_df.R | 19 ++- R/ggsurvtheme.R | 6 - R/utilities.R | 8 + README.md | 8 - build/vignette.rds |binary inst/doc/Informative_Survival_Plots.R | 54 +++++----- inst/doc/Informative_Survival_Plots.Rmd | 2 inst/doc/Informative_Survival_Plots.html | 12 +- inst/doc/Playing_with_fonts_and_texts.html | 12 +- inst/doc/Specifiying_weights_in_log-rank_comparisons.html | 14 +- inst/doc/ggforest-show-interactions-hazard-ratio.html | 4 man/add_ggsurvplot.Rd | 6 - man/ggsurvtheme.Rd | 2 tests/testthat/test-ggcoxdiagnostics.R | 43 +++++++ tests/testthat/test-ggsurvplot_facet.R | 10 + tools/README-ggplot2-basic-survival-plot-1.png |binary tools/README-ggplot2-customized-survival-plot-1.png |binary tools/README-ggplot2-more-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-platinium-customized-survival-plot-1.png |binary tools/README-ggplot2-uber-platinium-premium-customized-survival-plot-1.png |binary vignettes/Informative_Survival_Plots.Rmd | 2 28 files changed, 222 insertions(+), 103 deletions(-)
Title: 'Foreach' Parallel Adapter Using the 'Redis' Database
Description: Create and manage fault-tolerant task queues for the 'foreach' package using the 'Redis' key/value database.
Author: B. W. Lewis [aut, cre]
Maintainer: B. W. Lewis <blewis@illposed.net>
Diff between doRedis versions 3.0.2 dated 2023-05-02 and 3.0.3 dated 2025-09-02
doRedis-3.0.2/doRedis/inst/doc/Amazon.Rnw |only doRedis-3.0.2/doRedis/inst/doc/Amazon.pdf |only doRedis-3.0.2/doRedis/inst/scripts |only doRedis-3.0.2/doRedis/vignettes/Amazon.Rnw |only doRedis-3.0.3/doRedis/DESCRIPTION | 19 +++++++----- doRedis-3.0.3/doRedis/MD5 | 39 +++++++++++-------------- doRedis-3.0.3/doRedis/R/doRedis.R | 2 - doRedis-3.0.3/doRedis/R/redisWorker.R | 4 +- doRedis-3.0.3/doRedis/R/redux.R | 3 - doRedis-3.0.3/doRedis/build/vignette.rds |binary doRedis-3.0.3/doRedis/inst/doc/Debug.pdf |binary doRedis-3.0.3/doRedis/inst/doc/Service.pdf |binary doRedis-3.0.3/doRedis/inst/doc/doRedis.pdf |binary doRedis-3.0.3/doRedis/man/doRedis-package.Rd | 5 +++ doRedis-3.0.3/doRedis/man/redisDelete.Rd | 3 - doRedis-3.0.3/doRedis/man/redisGet.Rd | 3 - doRedis-3.0.3/doRedis/man/redisSet.Rd | 3 - doRedis-3.0.3/doRedis/man/redisWorker.Rd | 2 - doRedis-3.0.3/doRedis/man/registerDoRedis.Rd | 2 - doRedis-3.0.3/doRedis/man/startLocalWorkers.Rd | 2 - doRedis-3.0.3/doRedis/src/alive.c | 2 - doRedis-3.0.3/doRedis/tests/worker.R |only doRedis-3.0.3/doRedis/vignettes/textpos.sty |only 23 files changed, 42 insertions(+), 47 deletions(-)
Title: Calculate Diversity and Segregation Indices
Description: Implements common measures of diversity and spatial segregation. This package has tools to compute the majority of measures are reviewed in Massey and Denton (1988) <doi:10.2307/2579183>. Multiple common measures of within-geography diversity are implemented as well. All functions operate on data frames with a 'tidyselect' based workflow.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between divseg versions 0.0.5 dated 2022-12-17 and 0.1.0 dated 2025-09-02
divseg-0.0.5/divseg/R/utils-pipe.R |only divseg-0.0.5/divseg/man/pipe.Rd |only divseg-0.1.0/divseg/DESCRIPTION | 23 - divseg-0.1.0/divseg/MD5 | 154 +++++----- divseg-0.1.0/divseg/NAMESPACE | 2 divseg-0.1.0/divseg/NEWS.md | 7 divseg-0.1.0/divseg/R/abs_cent.R | 158 +++++------ divseg-0.1.0/divseg/R/abs_clust.R | 41 +- divseg-0.1.0/divseg/R/abs_conc.R | 29 +- divseg-0.1.0/divseg/R/atkinson.R | 23 - divseg-0.1.0/divseg/R/blau.R | 18 - divseg-0.1.0/divseg/R/correlation.R | 22 - divseg-0.1.0/divseg/R/data.R | 4 divseg-0.1.0/divseg/R/dd_interaction.R | 155 +++++----- divseg-0.1.0/divseg/R/dd_isolation.R | 33 +- divseg-0.1.0/divseg/R/delta.R | 25 - divseg-0.1.0/divseg/R/dissim.R | 28 + divseg-0.1.0/divseg/R/diversity.R | 16 - divseg-0.1.0/divseg/R/entropy.R | 134 ++++----- divseg-0.1.0/divseg/R/gini.R | 30 +- divseg-0.1.0/divseg/R/helpers.R | 69 ++-- divseg-0.1.0/divseg/R/hhi.R | 17 - divseg-0.1.0/divseg/R/interaction.R | 26 + divseg-0.1.0/divseg/R/inv_simpson.R | 17 - divseg-0.1.0/divseg/R/isolation.R | 24 - divseg-0.1.0/divseg/R/rel_cent.R | 47 +-- divseg-0.1.0/divseg/R/rel_clust.R | 33 +- divseg-0.1.0/divseg/R/rel_conc.R | 18 - divseg-0.1.0/divseg/R/reyni.R | 14 divseg-0.1.0/divseg/R/shannon.R | 20 - divseg-0.1.0/divseg/R/spat_prox.R | 35 +- divseg-0.1.0/divseg/R/utils-tidy-eval.R | 214 +++++++-------- divseg-0.1.0/divseg/README.md | 47 +-- divseg-0.1.0/divseg/inst/CITATION | 23 - divseg-0.1.0/divseg/man/de_county.Rd | 2 divseg-0.1.0/divseg/man/de_tract.Rd | 2 divseg-0.1.0/divseg/man/ds_abs_cent.Rd | 2 divseg-0.1.0/divseg/man/ds_abs_clust.Rd | 2 divseg-0.1.0/divseg/man/ds_abs_conc.Rd | 2 divseg-0.1.0/divseg/man/ds_blau.Rd | 2 divseg-0.1.0/divseg/man/ds_dd_interaction.Rd | 2 divseg-0.1.0/divseg/man/ds_dd_isolation.Rd | 2 divseg-0.1.0/divseg/man/ds_delta.Rd | 2 divseg-0.1.0/divseg/man/ds_dissim.Rd | 2 divseg-0.1.0/divseg/man/ds_entropy.Rd | 2 divseg-0.1.0/divseg/man/ds_gini.Rd | 2 divseg-0.1.0/divseg/man/ds_hhi.Rd | 2 divseg-0.1.0/divseg/man/ds_inv_simpson.Rd | 2 divseg-0.1.0/divseg/man/ds_rel_cent.Rd | 2 divseg-0.1.0/divseg/man/ds_rel_clust.Rd | 2 divseg-0.1.0/divseg/man/ds_shannon.Rd | 2 divseg-0.1.0/divseg/man/ds_spat_prox.Rd | 2 divseg-0.1.0/divseg/man/tidyeval.Rd | 14 divseg-0.1.0/divseg/tests/testthat.R | 4 divseg-0.1.0/divseg/tests/testthat/test-abs_cent.R | 4 divseg-0.1.0/divseg/tests/testthat/test-abs_clust.R | 4 divseg-0.1.0/divseg/tests/testthat/test-abs_conc.R | 4 divseg-0.1.0/divseg/tests/testthat/test-atkinson.R | 6 divseg-0.1.0/divseg/tests/testthat/test-blau.R | 4 divseg-0.1.0/divseg/tests/testthat/test-correlation.R | 5 divseg-0.1.0/divseg/tests/testthat/test-dd_interaction.R | 6 divseg-0.1.0/divseg/tests/testthat/test-dd_isolation.R | 6 divseg-0.1.0/divseg/tests/testthat/test-delta.R | 6 divseg-0.1.0/divseg/tests/testthat/test-dissim.R | 6 divseg-0.1.0/divseg/tests/testthat/test-diversity.R | 6 divseg-0.1.0/divseg/tests/testthat/test-entropy.R | 10 divseg-0.1.0/divseg/tests/testthat/test-gini.R | 8 divseg-0.1.0/divseg/tests/testthat/test-hhi.R | 4 divseg-0.1.0/divseg/tests/testthat/test-interaction.R | 7 divseg-0.1.0/divseg/tests/testthat/test-inv_simpson.R | 4 divseg-0.1.0/divseg/tests/testthat/test-isolation.R | 7 divseg-0.1.0/divseg/tests/testthat/test-perplexity.R | 2 divseg-0.1.0/divseg/tests/testthat/test-rel_cent.R | 4 divseg-0.1.0/divseg/tests/testthat/test-rel_clust.R | 4 divseg-0.1.0/divseg/tests/testthat/test-rel_conc.R | 4 divseg-0.1.0/divseg/tests/testthat/test-reyni.R | 6 divseg-0.1.0/divseg/tests/testthat/test-shannon.R | 4 divseg-0.1.0/divseg/tests/testthat/test-simpson.R | 2 divseg-0.1.0/divseg/tests/testthat/test-spat_prox.R | 4 79 files changed, 880 insertions(+), 807 deletions(-)
Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population)
models from 'NONMEM' <https://www.iconplc.com/solutions/technologies/nonmem/>.
'xpose' facilitates data import, creation of numerical run summary
and provide 'ggplot2'-based graphics for data exploration and model
diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph],
Andrew C. Hooker [aut, cph],
Sebastian Ueckert [aut, cph],
Mike K. Smith [ctb],
Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>
Diff between xpose versions 0.4.19 dated 2025-01-07 and 0.4.20 dated 2025-09-02
xpose-0.4.19/xpose/man/print.ggplot.Rd |only xpose-0.4.20/xpose/DESCRIPTION | 15 - xpose-0.4.20/xpose/MD5 | 39 +-- xpose-0.4.20/xpose/NEWS.md | 3 xpose-0.4.20/xpose/R/print_xpose_plot.R | 125 ++++------- xpose-0.4.20/xpose/R/update_themes.R | 4 xpose-0.4.20/xpose/R/xplot_helpers.R | 11 xpose-0.4.20/xpose/R/xpose_data.R | 2 xpose-0.4.20/xpose/R/zzz.R | 16 - xpose-0.4.20/xpose/build/vignette.rds |binary xpose-0.4.20/xpose/data/xpdb_ex_pk.rda |binary xpose-0.4.20/xpose/inst/doc/access_xpdb_data.html | 2 xpose-0.4.20/xpose/inst/doc/customize_plots.html | 34 +- xpose-0.4.20/xpose/inst/doc/import_model_outputs.html | 2 xpose-0.4.20/xpose/inst/doc/introduction.html | 10 xpose-0.4.20/xpose/inst/doc/multiple_pages.html | 14 - xpose-0.4.20/xpose/inst/doc/vpc.html | 10 xpose-0.4.20/xpose/man/print.xpose_plot.Rd | 2 xpose-0.4.20/xpose/tests/testthat/test-theme-objects.R | 5 xpose-0.4.20/xpose/tests/testthat/test-update_themes.R | 5 xpose-0.4.20/xpose/tests/testthat/test-xpose-default-plots.R | 7 21 files changed, 150 insertions(+), 156 deletions(-)
Title: Build and Run Spatially Explicit Agent-Based Models
Description: Build and run spatially explicit
agent-based models using only the R platform. 'NetLogoR' follows the same
framework as the 'NetLogo' software
(Wilensky (1999) <https://www.netlogo.org>) and is a translation
in R of the structure and functions of 'NetLogo'.
'NetLogoR' provides new R classes to define model agents and functions to
implement spatially explicit agent-based models in the R environment.
This package allows benefiting of the fast and easy coding phase from the
highly developed 'NetLogo' framework, coupled with the versatility, power
and massive resources of the R software.
Examples of two models from the NetLogo software repository
(Ants <https://ccl.northwestern.edu/netlogo/models/Ants>) and
Wolf-Sheep-Predation
(<https://ccl.northwestern.edu/netlogo/models/WolfSheepPredation>),
and a third, Butterfly, from
Railsback and Grimm (2012) <https://www.railsback-grimm-abm-book.com/>, all
written using 'NetLogoR' are available.
The 'NetLogo' code of the ori [...truncated...]
Author: Sarah Bauduin [aut] ,
Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [aut] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between NetLogoR versions 1.0.5 dated 2024-01-08 and 1.0.6 dated 2025-09-02
DESCRIPTION | 56 +- MD5 | 214 ++++----- NAMESPACE | 1 NEWS.md | 31 - R/NetLogoR-package.R | 5 R/agentMatrix-Class-methods.R | 41 - R/agentset-functions.R | 68 +- R/patch-functions.R | 54 +- R/turtle-functions.R | 174 +++---- R/world-functions.R | 28 - R/worldNLR-classes-methods.R | 4 README.md | 88 +-- build/vignette.rds |binary inst/WORDLIST | 24 - inst/doc/NLR-Dictionary.Rmd | 4 inst/doc/NLR-Dictionary.html | 31 - inst/doc/ProgrammingGuide.R | 94 ++-- inst/doc/ProgrammingGuide.Rmd | 2 inst/doc/ProgrammingGuide.html | 187 ++++---- inst/examples/Ants/Ants.R | 225 +++++++-- inst/examples/Wolf-Sheep-Predation/Wolf-Sheep-Predation.R | 231 +++++++--- inst/examples/Wolf-Sheep-Predation/WolfSheepPredation/WolfSheepPredation.Rmd | 2 man/NLall.Rd | 4 man/NLany.Rd | 4 man/NLcount.Rd | 4 man/NLdist.Rd | 6 man/NLset.Rd | 4 man/NLwith.Rd | 4 man/NetLogoR-package.Rd | 9 man/agentMatrix-show-methods.Rd | 11 man/agentMatrix.Rd | 2 man/bbox.Rd | 9 man/bk.Rd | 6 man/canMove.Rd | 4 man/clearPatches.Rd | 4 man/coordinates.Rd | 8 man/createOTurtles.Rd | 4 man/createTurtles.Rd | 4 man/createWorld.Rd | 2 man/die.Rd | 4 man/diffuse.Rd | 6 man/downhill.Rd | 4 man/dx.Rd | 4 man/dy.Rd | 4 man/extent.Rd | 4 man/face.Rd | 6 man/fd.Rd | 6 man/hatch.Rd | 4 man/home.Rd | 4 man/inCone.Rd | 4 man/inRadius.Rd | 4 man/inspect.Rd | 4 man/isNLclass.Rd | 4 man/layoutCircle.Rd | 4 man/left.Rd | 4 man/maxNof.Rd | 4 man/maxOneOf.Rd | 4 man/maxPxcor.Rd | 4 man/maxPycor.Rd | 4 man/minNof.Rd | 4 man/minOneOf.Rd | 4 man/minPxcor.Rd | 4 man/minPycor.Rd | 4 man/moveTo.Rd | 4 man/nOf.Rd | 4 man/neighbors.Rd | 4 man/noPatches.Rd | 4 man/noTurtles.Rd | 4 man/of.Rd | 4 man/oneOf.Rd | 4 man/other.Rd | 4 man/pExist.Rd | 4 man/patch.Rd | 4 man/patchAhead.Rd | 4 man/patchAt.Rd | 6 man/patchDistDir.Rd | 4 man/patchHere.Rd | 4 man/patchLeft.Rd | 4 man/patchRight.Rd | 4 man/patchSet.Rd | 4 man/patches.Rd | 4 man/randomPxcor.Rd | 4 man/randomPycor.Rd | 4 man/randomXcor.Rd | 4 man/randomYcor.Rd | 4 man/right.Rd | 4 man/setXY.Rd | 4 man/sortOn.Rd | 4 man/sprout.Rd | 4 man/subHeadings.Rd | 4 man/tExist.Rd | 4 man/towards.Rd | 6 man/turtle.Rd | 4 man/turtleSet.Rd | 4 man/turtlesAt.Rd | 6 man/turtlesOn.Rd | 4 man/turtlesOwn.Rd | 8 man/updateList.Rd | 6 man/uphill.Rd | 4 man/withMax.Rd | 4 man/withMin.Rd | 4 man/worldHeight.Rd | 4 man/worldMatrix-class.Rd | 2 man/worldWidth.Rd | 4 tests/testthat/test-agentMatrix.R | 4 tests/testthat/test-turtle-functions.R | 36 + vignettes/NLR-Dictionary.Rmd | 4 vignettes/ProgrammingGuide.Rmd | 2 108 files changed, 1106 insertions(+), 869 deletions(-)
Title: Create 'ggplot2' and 'gt' Visuals with Major League Baseball
Logos
Description: Tools to help visualize Major League Baseball analysis in 'ggplot2'
and 'gt'. You provide team/player information and 'mlbplotR' will transform
that information into team colors, logos, or player headshots for graphics.
Author: Sebastian Carl [aut],
Camden Kay [aut, cre, cph]
Maintainer: Camden Kay <camden.kay23@gmail.com>
Diff between mlbplotR versions 1.1.0 dated 2023-06-20 and 1.2.0 dated 2025-09-02
mlbplotR-1.1.0/mlbplotR/man/gt_fmt_mlb_headshot.Rd |only mlbplotR-1.2.0/mlbplotR/DESCRIPTION | 12 mlbplotR-1.2.0/mlbplotR/LICENSE | 4 mlbplotR-1.2.0/mlbplotR/MD5 | 94 mlbplotR-1.2.0/mlbplotR/NAMESPACE | 150 - mlbplotR-1.2.0/mlbplotR/NEWS.md | 14 mlbplotR-1.2.0/mlbplotR/R/build_grobs.R | 258 +- mlbplotR-1.2.0/mlbplotR/R/geom_cap_logos.R | 456 +-- mlbplotR-1.2.0/mlbplotR/R/geom_from_path.R | 268 +- mlbplotR-1.2.0/mlbplotR/R/geom_lines.R | 364 +-- mlbplotR-1.2.0/mlbplotR/R/geom_milb_logos.R |only mlbplotR-1.2.0/mlbplotR/R/geom_mlb_headshots.R | 455 ++- mlbplotR-1.2.0/mlbplotR/R/geom_mlb_logos.R | 576 ++-- mlbplotR-1.2.0/mlbplotR/R/ggpreview.R | 138 - mlbplotR-1.2.0/mlbplotR/R/gt_helpers.R | 989 +++++--- mlbplotR-1.2.0/mlbplotR/R/load_data.R | 196 - mlbplotR-1.2.0/mlbplotR/R/mlb_team_factors.R | 154 - mlbplotR-1.2.0/mlbplotR/R/mlb_tier_maker.R | 736 +++--- mlbplotR-1.2.0/mlbplotR/R/mlbplotR-package.R | 26 mlbplotR-1.2.0/mlbplotR/R/scale_mlb.R | 434 +-- mlbplotR-1.2.0/mlbplotR/R/sysdata.rda |binary mlbplotR-1.2.0/mlbplotR/R/theme_elements.R | 1393 +++++++----- mlbplotR-1.2.0/mlbplotR/R/theme_mlb.R | 138 - mlbplotR-1.2.0/mlbplotR/R/utils.R | 116 mlbplotR-1.2.0/mlbplotR/README.md | 146 - mlbplotR-1.2.0/mlbplotR/man/clean_team_abbrs.Rd | 58 mlbplotR-1.2.0/mlbplotR/man/element.Rd | 400 +-- mlbplotR-1.2.0/mlbplotR/man/figures/README-every-team-1.png |binary mlbplotR-1.2.0/mlbplotR/man/geom_cap_logos.Rd | 384 +-- mlbplotR-1.2.0/mlbplotR/man/geom_from_path.Rd | 310 +- mlbplotR-1.2.0/mlbplotR/man/geom_lines.Rd | 267 +- mlbplotR-1.2.0/mlbplotR/man/geom_milb_logos.Rd |only mlbplotR-1.2.0/mlbplotR/man/geom_mlb_headshots.Rd | 373 +-- mlbplotR-1.2.0/mlbplotR/man/geom_mlb_logos.Rd | 404 +-- mlbplotR-1.2.0/mlbplotR/man/ggpreview.Rd | 176 - mlbplotR-1.2.0/mlbplotR/man/gt_merge_stack_team_color.Rd | 114 mlbplotR-1.2.0/mlbplotR/man/gt_milb.Rd |only mlbplotR-1.2.0/mlbplotR/man/gt_mlb.Rd | 105 mlbplotR-1.2.0/mlbplotR/man/gt_mlb_column_labels.Rd | 98 mlbplotR-1.2.0/mlbplotR/man/gt_mlb_headshots.Rd |only mlbplotR-1.2.0/mlbplotR/man/load_headshots.Rd | 41 mlbplotR-1.2.0/mlbplotR/man/load_milb_teams.Rd |only mlbplotR-1.2.0/mlbplotR/man/load_mlb_teams.Rd | 46 mlbplotR-1.2.0/mlbplotR/man/mlb_player_tiers.Rd | 263 +- mlbplotR-1.2.0/mlbplotR/man/mlb_team_factor.Rd | 136 - mlbplotR-1.2.0/mlbplotR/man/mlb_team_tiers.Rd | 264 +- mlbplotR-1.2.0/mlbplotR/man/mlbplotR-package.Rd | 176 - mlbplotR-1.2.0/mlbplotR/man/scale_axes_mlb.Rd | 296 +- mlbplotR-1.2.0/mlbplotR/man/scale_mlb.Rd | 289 +- mlbplotR-1.2.0/mlbplotR/man/theme_mlb.Rd | 112 mlbplotR-1.2.0/mlbplotR/man/valid_team_names.Rd | 50 51 files changed, 6249 insertions(+), 5230 deletions(-)
Title: Generate, Visualise, and Evaluate Fast-and-Frugal Decision Trees
Description: Create, visualize, and test fast-and-frugal decision trees (FFTs) using the algorithms and methods described by Phillips, Neth, Woike & Gaissmaier (2017), <doi:10.1017/S1930297500006239>.
FFTs are simple and transparent decision trees for solving binary classification problems.
FFTs can be preferable to more complex algorithms because they require very little information, are easy to understand and communicate, and are robust against overfitting.
Author: Nathaniel Phillips [aut] ,
Hansjoerg Neth [aut, cre] ,
Jan Woike [aut] ,
Wolfgang Gaissmaier [aut]
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between FFTrees versions 2.0.0 dated 2023-06-05 and 2.1.0 dated 2025-09-02
FFTrees-2.0.0/FFTrees/R/fftrees_fitcomp.R |only FFTrees-2.0.0/FFTrees/inst/CoronaryArtery.jpg |only FFTrees-2.0.0/FFTrees/inst/confusiontable.jpg |only FFTrees-2.0.0/FFTrees/inst/gFFTs.png |only FFTrees-2.0.0/FFTrees/inst/mushrooms.jpg |only FFTrees-2.0.0/FFTrees/inst/titanic.jpg |only FFTrees-2.0.0/FFTrees/inst/virginica.jpg |only FFTrees-2.0.0/FFTrees/man/comp_pred.Rd |only FFTrees-2.0.0/FFTrees/man/fftrees_fitcomp.Rd |only FFTrees-2.0.0/FFTrees/tests/testthat/test_10_NA_data.R |only FFTrees-2.1.0/FFTrees/DESCRIPTION | 29 FFTrees-2.1.0/FFTrees/MD5 | 157 FFTrees-2.1.0/FFTrees/NAMESPACE | 6 FFTrees-2.1.0/FFTrees/NEWS.md | 66 FFTrees-2.1.0/FFTrees/R/FFTrees.R | 62 FFTrees-2.1.0/FFTrees/R/FFTreesdata_doc.R | 241 - FFTrees-2.1.0/FFTrees/R/fftrees_apply.R | 31 FFTrees-2.1.0/FFTrees/R/fftrees_create.R | 18 FFTrees-2.1.0/FFTrees/R/plotFFTrees_function.R | 2350 ++++------ FFTrees-2.1.0/FFTrees/R/replace_values_function.R |only FFTrees-2.1.0/FFTrees/R/util_abc.R | 42 FFTrees-2.1.0/FFTrees/R/util_const.R | 4 FFTrees-2.1.0/FFTrees/R/util_plot.R | 6 FFTrees-2.1.0/FFTrees/R/util_stats.R | 713 --- FFTrees-2.1.0/FFTrees/README.md | 126 FFTrees-2.1.0/FFTrees/build/partial.rdb |only FFTrees-2.1.0/FFTrees/build/vignette.rds |binary FFTrees-2.1.0/FFTrees/inst/CITATION | 4 FFTrees-2.1.0/FFTrees/inst/WORDLIST | 2 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_accuracy_statistics.R | 2 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_accuracy_statistics.Rmd | 2 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_accuracy_statistics.html | 49 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_examples.R | 20 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_examples.Rmd | 19 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_examples.html | 120 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_function.R | 10 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_function.Rmd | 2 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_function.html | 183 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_heart.R | 16 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_heart.Rmd | 5 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_heart.html | 85 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_mytree.R | 828 +-- FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_mytree.Rmd | 19 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_mytree.html | 252 - FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_plot.R | 6 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_plot.Rmd | 2 FFTrees-2.1.0/FFTrees/inst/doc/FFTrees_plot.html | 100 FFTrees-2.1.0/FFTrees/inst/doc/guide.R | 25 FFTrees-2.1.0/FFTrees/inst/doc/guide.Rmd | 10 FFTrees-2.1.0/FFTrees/inst/doc/guide.html | 33 FFTrees-2.1.0/FFTrees/man/FFTrees-package.Rd |only FFTrees-2.1.0/FFTrees/man/FFTrees.Rd | 32 FFTrees-2.1.0/FFTrees/man/add_stats.Rd | 5 FFTrees-2.1.0/FFTrees/man/blood.Rd | 2 FFTrees-2.1.0/FFTrees/man/breastcancer.Rd | 10 FFTrees-2.1.0/FFTrees/man/car.Rd | 6 FFTrees-2.1.0/FFTrees/man/classtable.Rd | 2 FFTrees-2.1.0/FFTrees/man/contraceptive.Rd | 5 FFTrees-2.1.0/FFTrees/man/creditapproval.Rd | 12 FFTrees-2.1.0/FFTrees/man/fertility.Rd | 5 FFTrees-2.1.0/FFTrees/man/fftrees_create.Rd | 15 FFTrees-2.1.0/FFTrees/man/figures/README-example-heart-plot-1.png |binary FFTrees-2.1.0/FFTrees/man/figures/README-example-heart-verbal-1.png |binary FFTrees-2.1.0/FFTrees/man/figures/logo.png |only FFTrees-2.1.0/FFTrees/man/forestfires.Rd | 2 FFTrees-2.1.0/FFTrees/man/heart.cost.Rd | 6 FFTrees-2.1.0/FFTrees/man/heartdisease.Rd | 15 FFTrees-2.1.0/FFTrees/man/iris.v.Rd | 5 FFTrees-2.1.0/FFTrees/man/mushrooms.Rd | 2 FFTrees-2.1.0/FFTrees/man/plot.FFTrees.Rd | 14 FFTrees-2.1.0/FFTrees/man/sonar.Rd | 128 FFTrees-2.1.0/FFTrees/man/titanic.Rd | 6 FFTrees-2.1.0/FFTrees/man/voting.Rd | 7 FFTrees-2.1.0/FFTrees/man/wine.Rd | 7 FFTrees-2.1.0/FFTrees/tests/testthat/test_09_cost.R | 5 FFTrees-2.1.0/FFTrees/tests/testthat/test_10_tree_definitions.R |only FFTrees-2.1.0/FFTrees/tests/testthat/test_11_NA_data.R |only FFTrees-2.1.0/FFTrees/vignettes/CoronaryArtery.jpg |only FFTrees-2.1.0/FFTrees/vignettes/FFTrees_accuracy_statistics.Rmd | 2 FFTrees-2.1.0/FFTrees/vignettes/FFTrees_examples.Rmd | 19 FFTrees-2.1.0/FFTrees/vignettes/FFTrees_function.Rmd | 2 FFTrees-2.1.0/FFTrees/vignettes/FFTrees_heart.Rmd | 5 FFTrees-2.1.0/FFTrees/vignettes/FFTrees_mytree.Rmd | 19 FFTrees-2.1.0/FFTrees/vignettes/FFTrees_plot.Rmd | 2 FFTrees-2.1.0/FFTrees/vignettes/confusiontable.jpg |only FFTrees-2.1.0/FFTrees/vignettes/gFFTs.png |only FFTrees-2.1.0/FFTrees/vignettes/guide.Rmd | 10 FFTrees-2.1.0/FFTrees/vignettes/logo.png |only FFTrees-2.1.0/FFTrees/vignettes/mushrooms.jpg |only FFTrees-2.1.0/FFTrees/vignettes/titanic.jpg |only FFTrees-2.1.0/FFTrees/vignettes/virginica.jpg |only 91 files changed, 2637 insertions(+), 3358 deletions(-)
Title: Measuring Association with Recursive Binning
Description: An iterative implementation of a recursive binary partitioning algorithm to measure pairwise dependence with a modular design that allows user specification of the splitting logic and stop criteria. Helper functions provide suggested versions of both and support visualization and the computation of summary statistics on final binnings. For a thorough discussion and demonstration of the algorithm, see Salahub and Oldford (2025) <doi:10.1002/sam.70042>.
Author: Chris Salahub [aut, cre] ,
Wayne Oldford [aut]
Maintainer: Chris Salahub <chris.salahub@uwaterloo.ca>
Diff between AssocBin versions 1.1-1 dated 2025-08-29 and 1.1-2 dated 2025-09-02
AssocBin-1.1-1/AssocBin/inst/doc/complex.R |only AssocBin-1.1-1/AssocBin/inst/doc/complex.Rmd |only AssocBin-1.1-1/AssocBin/inst/doc/complex.html |only AssocBin-1.1-1/AssocBin/vignettes/complex.Rmd |only AssocBin-1.1-2/AssocBin/DESCRIPTION | 14 + AssocBin-1.1-2/AssocBin/MD5 | 16 -- AssocBin-1.1-2/AssocBin/build/vignette.rds |binary AssocBin-1.1-2/AssocBin/inst/doc/AssocBin.R | 29 +++ AssocBin-1.1-2/AssocBin/inst/doc/AssocBin.Rmd | 81 +++++++++-- AssocBin-1.1-2/AssocBin/inst/doc/AssocBin.html | 183 +++++++++++++++++++------ AssocBin-1.1-2/AssocBin/vignettes/AssocBin.Rmd | 81 +++++++++-- 11 files changed, 328 insertions(+), 76 deletions(-)
Title: Vertical Profiles of Biological Signals in Weather Radar Data
Description: 'R' implementation of the 'vol2bird' software for generating vertical profiles
of birds and other biological signals in weather radar data. See Dokter et al.
(2011) <doi:10.1098/rsif.2010.0116> for a paper describing the methodology.
Author: Anders Henja [aut] ,
Adriaan M. Dokter [aut, cre] ,
Alexander Tedeschi [ctb] ,
Tsung-Yu Lin [ctb] ,
Subranshu Maji [ctb] ,
Daniel Sheldon [ctb] ,
Bart Kranstauber [ctb] ,
Jurriaan H. Spaaks [ctb] ,
Lourens Veen [ctb] ,
Iwan Holleman [ctb] ,
Hidde Lei [...truncated...]
Maintainer: Adriaan M. Dokter <vol2birdr@cornell.edu>
Diff between vol2birdR versions 1.2.0 dated 2025-09-02 and 1.2.1 dated 2025-09-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 7 +++++-- R/rsl2odim.R | 4 ++-- man/rsl2odim.Rd | 4 ++-- 5 files changed, 16 insertions(+), 13 deletions(-)
Title: The Colors of your University
Description: Most universities use specific color combinations to express their unique brand identity. The 'unicol' package provides the colors and color palettes of various universities for easy plotting and printing in R. We collect and provide a diverse range of color palettes for creating scientific visualizations.
Author: Hansjoerg Neth [aut, cre] ,
Constantin Basler [ctb],
Paula Bauer [ctb],
Kaethe Bodenstein [ctb],
Franziska Drechsel [ctb],
Gina-Loretta Franz [ctb],
Karolin Heiss [ctb],
Julia Koenig [ctb],
Isabelle Krist [ctb],
Larissa Schwab [ctb],
Alina Sohst [ctb [...truncated...]
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between unicol versions 0.3.0 dated 2024-05-01 and 0.4.0 dated 2025-09-02
unicol-0.3.0/unicol/man/fu_0.Rd |only unicol-0.4.0/unicol/DESCRIPTION | 13 unicol-0.4.0/unicol/MD5 | 816 +++++----- unicol-0.4.0/unicol/NAMESPACE | 6 unicol-0.4.0/unicol/NEWS.md | 65 unicol-0.4.0/unicol/R/0_all_pals.R | 34 unicol-0.4.0/unicol/R/2_example_pal.R | 10 unicol-0.4.0/unicol/R/5_util.R | 3 unicol-0.4.0/unicol/R/ANU.R | 20 unicol-0.4.0/unicol/R/Aalto.R | 22 unicol-0.4.0/unicol/R/Aarhus.R | 10 unicol-0.4.0/unicol/R/Aberystwyth.R | 20 unicol-0.4.0/unicol/R/Arizona.R | 30 unicol-0.4.0/unicol/R/Auckland.R | 20 unicol-0.4.0/unicol/R/Bangor.R | 40 unicol-0.4.0/unicol/R/Bergen.R | 40 unicol-0.4.0/unicol/R/Berkeley.R | 32 unicol-0.4.0/unicol/R/Birmingham.R | 14 unicol-0.4.0/unicol/R/Boston_University.R | 10 unicol-0.4.0/unicol/R/British_Columbia.R | 10 unicol-0.4.0/unicol/R/Brown.R | 20 unicol-0.4.0/unicol/R/CMU.R | 30 unicol-0.4.0/unicol/R/Caltech.R | 30 unicol-0.4.0/unicol/R/Cardiff.R | 24 unicol-0.4.0/unicol/R/Carleton.R | 10 unicol-0.4.0/unicol/R/Columbia.R | 38 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unicol-0.4.0/unicol/man/uottawa.Rd | 10 unicol-0.4.0/unicol/man/upenn_1.Rd | 10 unicol-0.4.0/unicol/man/upenn_2.Rd | 10 unicol-0.4.0/unicol/man/uppsala.Rd | 12 unicol-0.4.0/unicol/man/utoronto.Rd | 10 unicol-0.4.0/unicol/man/uvic_1.Rd | 12 unicol-0.4.0/unicol/man/uvic_2.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_arts.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_engineering.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_environment.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_health.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_main.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_math.Rd | 12 unicol-0.4.0/unicol/man/uwaterloo_science.Rd | 12 unicol-0.4.0/unicol/man/vanderbilt_1.Rd | 10 unicol-0.4.0/unicol/man/vanderbilt_2.Rd | 10 unicol-0.4.0/unicol/man/vanderbilt_3.Rd | 10 unicol-0.4.0/unicol/man/waikato.Rd | 10 unicol-0.4.0/unicol/man/western_uni.Rd | 10 unicol-0.4.0/unicol/man/willamette.Rd | 10 unicol-0.4.0/unicol/man/wm_1.Rd | 10 unicol-0.4.0/unicol/man/wm_2.Rd | 10 unicol-0.4.0/unicol/man/wm_3.Rd | 10 unicol-0.4.0/unicol/man/wollongong_1.Rd | 10 unicol-0.4.0/unicol/man/wollongong_2.Rd | 10 unicol-0.4.0/unicol/man/yale.Rd | 10 unicol-0.4.0/unicol/man/yeshiva.Rd | 10 unicol-0.4.0/unicol/man/yorku_1.Rd | 10 unicol-0.4.0/unicol/man/yorku_2.Rd | 10 unicol-0.4.0/unicol/vignettes/color_pals.Rmd | 54 unicol-0.4.0/unicol/vignettes/using_pals.Rmd | 1 412 files changed, 4471 insertions(+), 3877 deletions(-)
Title: General Purpose 'GraphQL' Client
Description: A 'GraphQL' client, with an R6 interface for initializing a
connection to a 'GraphQL' instance, and methods for constructing
queries, including fragments and parameterized queries. Queries are
checked with the 'libgraphqlparser' C++ parser via the 'graphql'
package.
Author: Scott Chamberlain [aut] ,
Mark Padgham [aut, cre]
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between ghql versions 0.1.0 dated 2020-03-04 and 0.1.2 dated 2025-09-02
ghql-0.1.0/ghql/README.md |only ghql-0.1.2/ghql/DESCRIPTION | 45 ++++--- ghql-0.1.2/ghql/LICENSE | 4 ghql-0.1.2/ghql/MD5 | 23 +--- ghql-0.1.2/ghql/R/client.R | 34 +++--- ghql-0.1.2/ghql/R/ghql-package.R | 2 ghql-0.1.2/ghql/R/query-class.R | 2 ghql-0.1.2/ghql/R/zzz.R | 10 + ghql-0.1.2/ghql/man/Fragment.Rd | 10 + ghql-0.1.2/ghql/man/GraphqlClient.Rd | 58 ++++++---- ghql-0.1.2/ghql/man/Query.Rd | 22 ++- ghql-0.1.2/ghql/man/ghql-package.Rd | 9 + ghql-0.1.2/ghql/tests/testthat/test-GraphqlClient.R | 113 +++++++++++++++++++- 13 files changed, 248 insertions(+), 84 deletions(-)
Title: A Wrapper of the JavaScript Library 'DataTables'
Description: Data objects in R can be rendered as HTML tables using the
JavaScript library 'DataTables' (typically via R Markdown or Shiny).
The 'DataTables' library has been included in this R package. The
package name 'DT' is an abbreviation of 'DataTables'.
Author: Yihui Xie [aut],
Joe Cheng [aut],
Xianying Tan [aut],
Garrick Aden-Buie [aut, cre] ,
JJ Allaire [ctb],
Maximilian Girlich [ctb],
Greg Freedman Ellis [ctb],
Johannes Rauh [ctb],
SpryMedia Limited [ctb, cph] ,
Brian Reavis [ctb, cph] ,
Leon Gersen [ctb [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@posit.co>
Diff between DT versions 0.33 dated 2024-04-04 and 0.34.0 dated 2025-09-02
DT-0.33/DT/inst/examples/DT-click/rsconnect |only DT-0.33/DT/inst/examples/DT-edit/rsconnect |only DT-0.33/DT/inst/examples/DT-filter/rsconnect |only DT-0.33/DT/inst/examples/DT-info/rsconnect |only DT-0.33/DT/inst/examples/DT-proxy/rsconnect |only DT-0.33/DT/inst/examples/DT-radio/rsconnect |only DT-0.33/DT/inst/examples/DT-rows/rsconnect |only DT-0.33/DT/inst/examples/DT-scroller/rsconnect |only DT-0.33/DT/inst/examples/DT-scroller/www |only DT-0.33/DT/inst/examples/DT-selection/rsconnect |only DT-0.34.0/DT/DESCRIPTION | 62 ++-- DT-0.34.0/DT/LICENSE | 305 ------------------------ DT-0.34.0/DT/LICENSE.note |only DT-0.34.0/DT/MD5 | 51 +--- DT-0.34.0/DT/R/datatables.R | 226 +++++++++-------- DT-0.34.0/DT/R/format.R | 96 +++---- DT-0.34.0/DT/R/shiny.R | 142 +++++------ DT-0.34.0/DT/R/utils.R | 26 +- DT-0.34.0/DT/build/vignette.rds |binary DT-0.34.0/DT/inst/doc/DT.html | 30 +- DT-0.34.0/DT/inst/htmlwidgets/datatables.js | 2 DT-0.34.0/DT/man/coerceValue.Rd | 16 - DT-0.34.0/DT/man/dataTableAjax.Rd | 10 DT-0.34.0/DT/man/dataTableOutput.Rd | 17 - DT-0.34.0/DT/man/datatable.Rd | 207 ++++++++-------- DT-0.34.0/DT/man/doColumnSearch.Rd | 14 - DT-0.34.0/DT/man/editData.Rd | 6 DT-0.34.0/DT/man/formatCurrency.Rd | 19 - DT-0.34.0/DT/man/proxy.Rd | 21 - DT-0.34.0/DT/man/replaceData.Rd | 20 - DT-0.34.0/DT/man/styleInterval.Rd | 5 DT-0.34.0/DT/man/tableHeader.Rd | 2 32 files changed, 498 insertions(+), 779 deletions(-)
Title: Bayesian Dynamic Systems Modeling
Description: Implements methods for building and analyzing models based on panel
data as described in the paper by
Moral-Benito (2013, <doi:10.1080/07350015.2013.818003>).
The package provides functions to estimate dynamic panel data models
and analyze the results of the estimation.
Author: Mateusz Wyszynski [aut],
Marcin Dubel [ctb, cre],
Krzysztof Beck [ctb]
Maintainer: Marcin Dubel <marcindubel@gmail.com>
Diff between bdsm versions 0.2.1 dated 2025-05-02 and 0.2.2 dated 2025-09-02
bdsm-0.2.1/bdsm/vignettes/apalike.bst |only bdsm-0.2.2/bdsm/DESCRIPTION | 6 bdsm-0.2.2/bdsm/MD5 | 42 ++--- bdsm-0.2.2/bdsm/NEWS.md | 10 + bdsm-0.2.2/bdsm/R/bma.R | 9 - bdsm-0.2.2/bdsm/R/coef_hist.R | 8 - bdsm-0.2.2/bdsm/R/data.R | 6 bdsm-0.2.2/bdsm/R/jointness.R | 2 bdsm-0.2.2/bdsm/R/model_space.R | 4 bdsm-0.2.2/bdsm/README.md | 24 --- bdsm-0.2.2/bdsm/data/full_bma_results.rda |only bdsm-0.2.2/bdsm/inst/doc/bdsm_vignette.R | 94 ++++++------ bdsm-0.2.2/bdsm/inst/doc/bdsm_vignette.Rnw | 12 - bdsm-0.2.2/bdsm/inst/doc/bdsm_vignette.pdf |binary bdsm-0.2.2/bdsm/man/full_bma_results.Rd |only bdsm-0.2.2/bdsm/man/jointness.Rd | 2 bdsm-0.2.2/bdsm/man/optim_model_space.Rd | 2 bdsm-0.2.2/bdsm/man/optim_model_space_params.Rd | 2 bdsm-0.2.2/bdsm/tests/testthat/Rplots.pdf |only bdsm-0.2.2/bdsm/tests/testthat/helper-data_generator.R | 16 +- bdsm-0.2.2/bdsm/tests/testthat/test-SEM_likelihood.R | 31 --- bdsm-0.2.2/bdsm/tests/testthat/test-coef_hist.R | 8 - bdsm-0.2.2/bdsm/tests/testthat/test-model_space.R | 133 ++++++++++++++--- bdsm-0.2.2/bdsm/vignettes/bdsm_vignette.Rnw | 12 - 24 files changed, 249 insertions(+), 174 deletions(-)
Title: Visualizing Changes in Performance Measures and Demographic
Affiliations using Animation
Description: Create an interactive visualization to be used for communication purposes. Providing the function for preparing, plotting, and animating the data. Krisanat Anukarnsakulchularp (2023) <https://github.com/KrisanatA/animbook-journal>.
Author: Krisanat Anukarnsakulchularp [aut, cre, cph] ,
Dianne Cook [aut]
Maintainer: Krisanat Anukarnsakulchularp <krisanat.anu@gmail.com>
Diff between animbook versions 1.0.0 dated 2023-12-05 and 1.0.1 dated 2025-09-02
animbook-1.0.0/animbook/man/figures/README-unnamed-chunk-2-1.gif |only animbook-1.0.0/animbook/man/figures/README-unnamed-chunk-5-1.png |only animbook-1.0.0/animbook/man/figures/README-unnamed-chunk-5-2.png |only animbook-1.0.0/animbook/man/figures/README-unnamed-chunk-5-3.png |only animbook-1.0.0/animbook/man/figures/README-unnamed-chunk-6-1.gif |only animbook-1.0.0/animbook/vignettes/figures |only animbook-1.0.1/animbook/DESCRIPTION | 18 animbook-1.0.1/animbook/LICENSE | 4 animbook-1.0.1/animbook/MD5 | 68 animbook-1.0.1/animbook/NAMESPACE | 30 animbook-1.0.1/animbook/NEWS.md | 6 animbook-1.0.1/animbook/R/anim-animate.R | 8 animbook-1.0.1/animbook/R/anim-prep.R | 4 animbook-1.0.1/animbook/R/data.R | 2 animbook-1.0.1/animbook/R/kangaroo-plot.R | 3 animbook-1.0.1/animbook/R/wallaby-plot.R | 3 animbook-1.0.1/animbook/README.md | 366 +-- animbook-1.0.1/animbook/build/vignette.rds |binary animbook-1.0.1/animbook/inst/doc/animbook.R | 145 - animbook-1.0.1/animbook/inst/doc/animbook.Rmd | 6 animbook-1.0.1/animbook/inst/doc/animbook.html | 998 +++++----- animbook-1.0.1/animbook/man/aeles.Rd | 58 animbook-1.0.1/animbook/man/anim_animate.Rd | 58 animbook-1.0.1/animbook/man/anim_prep.Rd | 142 - animbook-1.0.1/animbook/man/anim_prep_cat.Rd | 94 animbook-1.0.1/animbook/man/cat_change.Rd | 60 animbook-1.0.1/animbook/man/dbl_change.Rd | 60 animbook-1.0.1/animbook/man/figures/README-unnamed-chunk-3-1.gif |binary animbook-1.0.1/animbook/man/figures/README-unnamed-chunk-4-1.gif |only animbook-1.0.1/animbook/man/figures/logo.png |only animbook-1.0.1/animbook/man/funnel_web_plot.Rd | 70 animbook-1.0.1/animbook/man/funnel_web_spider_data.Rd | 44 animbook-1.0.1/animbook/man/kangaroo_data.Rd | 74 animbook-1.0.1/animbook/man/kangaroo_plot.Rd | 110 - animbook-1.0.1/animbook/man/osiris.Rd | 60 animbook-1.0.1/animbook/man/sigmoid.Rd | 82 animbook-1.0.1/animbook/man/sine.Rd | 76 animbook-1.0.1/animbook/man/wallaby_data.Rd | 110 - animbook-1.0.1/animbook/vignettes/animbook.Rmd | 6 39 files changed, 1314 insertions(+), 1451 deletions(-)
Title: Write and Render 'Typst' Documents
Description: Compile 'Typst' files using the 'typst-cli' (<https://typst.app>)
command line tool. Automatically falls back to rendering via embedded 'Typst'
from 'Quarto' (<https://quarto.org>) if 'Typst' is not installed. Includes
utilities to check for 'typst-cli' availability and run 'Typst' commands.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between typr versions 0.0.3 dated 2025-05-30 and 0.0.4 dated 2025-09-02
DESCRIPTION | 10 - LICENSE | 4 MD5 | 46 ++++---- NAMESPACE | 36 +++--- NEWS.md | 10 + R/aaa.R | 4 R/background.R | 62 +++++------ R/fonts.R | 22 ++-- R/query.R | 6 - R/watch.R | 242 ++++++++++++++++++++++---------------------- man/find_typst.Rd | 76 ++++++------- man/typr_compile.Rd | 74 ++++++------- man/typr_fonts.Rd | 38 +++--- man/typr_help.Rd | 46 ++++---- man/typr_init.Rd | 58 +++++----- man/typr_query.Rd | 2 man/typr_version.Rd | 44 ++++---- man/typr_watch.Rd | 78 +++++++------- man/typr_which_typst.Rd | 34 +++--- tests/test.pdf |binary tests/test.typ | 26 ++-- tests/testthat/setup.R | 38 +++--- tests/testthat/test-init.R | 20 +-- tests/testthat/test-query.R | 22 ++-- 24 files changed, 501 insertions(+), 497 deletions(-)
Title: Core Utilities for Developing and Running Spatially Explicit
Discrete Event Models
Description: Provides the core framework for a discrete event system to
implement a complete data-to-decisions, reproducible workflow.
The core components facilitate the development of modular pieces,
and enable the user to include additional functionality by running user-built modules.
Includes conditional scheduling, restart after interruption, packaging of
reusable modules, tools for developing arbitrary automated workflows,
automated interweaving of modules of different temporal resolution,
and tools for visualizing and understanding the within-project dependencies.
The suggested package 'NLMR' can be installed from the repository
(<https://PredictiveEcology.r-universe.dev>).
Author: Alex M Chubaty [aut] ,
Eliot J B McIntire [aut, cre] ,
Yong Luo [ctb],
Steve Cumming [ctb],
Ceres Barros [ctb] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between SpaDES.core versions 2.1.0 dated 2024-06-02 and 2.1.6 dated 2025-09-02
SpaDES.core-2.1.0/SpaDES.core/man/newModuleCode.Rd |only SpaDES.core-2.1.0/SpaDES.core/man/newModuleDocumentation.Rd |only SpaDES.core-2.1.6/SpaDES.core/DESCRIPTION | 27 SpaDES.core-2.1.6/SpaDES.core/MD5 | 143 ++-- SpaDES.core-2.1.6/SpaDES.core/NAMESPACE | 9 SpaDES.core-2.1.6/SpaDES.core/NEWS.md | 26 SpaDES.core-2.1.6/SpaDES.core/R/Plots.R | 64 + SpaDES.core-2.1.6/SpaDES.core/R/cache.R | 74 ++ SpaDES.core-2.1.6/SpaDES.core/R/convertToPackage.R | 176 +++-- SpaDES.core-2.1.6/SpaDES.core/R/copy.R | 32 SpaDES.core-2.1.6/SpaDES.core/R/downloadData.R | 4 SpaDES.core-2.1.6/SpaDES.core/R/helpers.R | 5 SpaDES.core-2.1.6/SpaDES.core/R/misc-methods.R | 18 SpaDES.core-2.1.6/SpaDES.core/R/module-dependencies-methods.R | 2 SpaDES.core-2.1.6/SpaDES.core/R/module-repository.R | 4 SpaDES.core-2.1.6/SpaDES.core/R/module-template.R | 162 ++-- SpaDES.core-2.1.6/SpaDES.core/R/moduleMetadata.R | 6 SpaDES.core-2.1.6/SpaDES.core/R/paths.R | 2 SpaDES.core-2.1.6/SpaDES.core/R/plotting-diagrams.R | 4 SpaDES.core-2.1.6/SpaDES.core/R/restart.R | 5 SpaDES.core-2.1.6/SpaDES.core/R/saveLoadSimList.R | 3 SpaDES.core-2.1.6/SpaDES.core/R/simList-accessors.R | 34 - SpaDES.core-2.1.6/SpaDES.core/R/simList-class.R | 4 SpaDES.core-2.1.6/SpaDES.core/R/simulation-simInit.R | 33 SpaDES.core-2.1.6/SpaDES.core/R/simulation-spades.R | 31 SpaDES.core-2.1.6/SpaDES.core/R/spades-core-package.R | 56 - SpaDES.core-2.1.6/SpaDES.core/R/times.R | 3 SpaDES.core-2.1.6/SpaDES.core/build/vignette.rds |binary SpaDES.core-2.1.6/SpaDES.core/inst/WORDLIST | 25 SpaDES.core-2.1.6/SpaDES.core/inst/doc/i-introduction.R | 102 +-- SpaDES.core-2.1.6/SpaDES.core/inst/doc/i-introduction.html | 8 SpaDES.core-2.1.6/SpaDES.core/inst/doc/ii-modules.R | 176 ++--- SpaDES.core-2.1.6/SpaDES.core/inst/doc/ii-modules.html | 63 - SpaDES.core-2.1.6/SpaDES.core/inst/doc/iii-cache.R | 16 SpaDES.core-2.1.6/SpaDES.core/inst/doc/iii-cache.html | 340 ++++------ SpaDES.core-2.1.6/SpaDES.core/inst/doc/iv-advanced.R | 22 SpaDES.core-2.1.6/SpaDES.core/inst/doc/iv-advanced.html | 4 SpaDES.core-2.1.6/SpaDES.core/inst/doc/v-automated-testing.html | 4 SpaDES.core-2.1.6/SpaDES.core/inst/sampleModules/fireSpread/fireSpread.R | 17 SpaDES.core-2.1.6/SpaDES.core/inst/templates/module.Rmd.template | 11 SpaDES.core-2.1.6/SpaDES.core/inst/templates/render-module-rmd.yaml.template | 45 - SpaDES.core-2.1.6/SpaDES.core/man/Copy.Rd | 8 SpaDES.core-2.1.6/SpaDES.core/man/FilterRecursive.Rd |only SpaDES.core-2.1.6/SpaDES.core/man/Plots.Rd | 34 - SpaDES.core-2.1.6/SpaDES.core/man/SpaDES.core-package.Rd | 46 - SpaDES.core-2.1.6/SpaDES.core/man/all.equal.simList.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/checkModulePath.Rd |only SpaDES.core-2.1.6/SpaDES.core/man/dealWithClass.Rd | 12 SpaDES.core-2.1.6/SpaDES.core/man/depsLoadOrder.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/downloadData.Rd | 4 SpaDES.core-2.1.6/SpaDES.core/man/emptyEventList.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/moduleDiagram.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/moduleGraph.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/newModule.Rd | 81 ++ SpaDES.core-2.1.6/SpaDES.core/man/newModuleTests.Rd | 4 SpaDES.core-2.1.6/SpaDES.core/man/robustDigest.Rd | 6 SpaDES.core-2.1.6/SpaDES.core/man/setPaths.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/simInit.Rd | 5 SpaDES.core-2.1.6/SpaDES.core/man/simInitAndSpades.Rd | 10 SpaDES.core-2.1.6/SpaDES.core/man/simList-accessors-events.Rd | 2 SpaDES.core-2.1.6/SpaDES.core/man/simList-class.Rd | 4 SpaDES.core-2.1.6/SpaDES.core/man/spades.Rd | 12 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-Plots.R | 7 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-cache.R | 22 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-downloadModule.R | 2 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-load.R | 41 + SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-misc.R | 76 ++ SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-mod.R | 4 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-module-deps-methods.R | 5 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-module-template.R | 124 +++ SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-parallel.R |only SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-simList.R | 6 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-simulation.R | 5 SpaDES.core-2.1.6/SpaDES.core/tests/testthat/test-timeunits.R | 169 ++-- SpaDES.core-2.1.6/SpaDES.core/vignettes/bibliography.bib | 2 75 files changed, 1534 insertions(+), 929 deletions(-)
Title: An R Package for Facilitating Large-Scale Latent Variable
Analyses in Mplus
Description: Leverages the R language to automate latent variable model estimation
and interpretation using 'Mplus', a powerful latent variable modeling program
developed by Muthen and Muthen (<https://www.statmodel.com>). Specifically, this package
provides routines for creating related groups of models, running batches of
models, and extracting and tabulating model parameters and fit statistics.
Author: Michael Hallquist [aut, cre],
Joshua Wiley [aut],
Caspar van Lissa [ctb],
Daniel Morillo [ctb]
Maintainer: Michael Hallquist <michael.hallquist@gmail.com>
Diff between MplusAutomation versions 1.1.1 dated 2024-01-30 and 1.2 dated 2025-09-02
MplusAutomation-1.1.1/MplusAutomation/man/l_getSavedata_readRawFile.Rd |only MplusAutomation-1.2/MplusAutomation/DESCRIPTION | 10 MplusAutomation-1.2/MplusAutomation/MD5 | 267 ++-- MplusAutomation-1.2/MplusAutomation/NAMESPACE | 19 MplusAutomation-1.2/MplusAutomation/NEWS | 21 MplusAutomation-1.2/MplusAutomation/R/MplusAutomation.R | 25 MplusAutomation-1.2/MplusAutomation/R/compareModels.R | 114 + MplusAutomation-1.2/MplusAutomation/R/createModels.R | 8 MplusAutomation-1.2/MplusAutomation/R/data.R | 42 MplusAutomation-1.2/MplusAutomation/R/extractAuxDis.R | 50 MplusAutomation-1.2/MplusAutomation/R/extractEFAparameters.R | 1 MplusAutomation-1.2/MplusAutomation/R/extractIndirect.R | 6 MplusAutomation-1.2/MplusAutomation/R/extractModIndices.R | 26 MplusAutomation-1.2/MplusAutomation/R/extractParameters.R | 247 ++- MplusAutomation-1.2/MplusAutomation/R/extractSaveData.R | 213 +-- MplusAutomation-1.2/MplusAutomation/R/graphModels.R | 2 MplusAutomation-1.2/MplusAutomation/R/mixtures.R | 31 MplusAutomation-1.2/MplusAutomation/R/mplus.R | 58 MplusAutomation-1.2/MplusAutomation/R/mplusModel.R |only MplusAutomation-1.2/MplusAutomation/R/parseOutput.R | 191 +- MplusAutomation-1.2/MplusAutomation/R/prepareMplusData.R | 36 MplusAutomation-1.2/MplusAutomation/R/readModels.R | 242 ++- MplusAutomation-1.2/MplusAutomation/R/runModels.R | 70 - 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More information about MplusAutomation at CRAN
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Title: Joint Sparse Regression & Network Learning with Missing Data
Description: Simultaneously estimates sparse regression coefficients and
response network structure in multivariate models with missing data.
Unlike traditional approaches requiring imputation, handles
missingness natively through unbiased estimating equations (MCAR/MAR
compatible). Employs dual L1 regularization with automated selection
via cross-validation or information criteria. Includes parallel
computation, warm starts, adaptive grids, publication-ready
visualizations, and prediction methods. Ideal for genomics,
neuroimaging, and multi-trait studies with incomplete high-dimensional
outcomes. See Zeng et al. (2025) <doi:10.48550/arXiv.2507.05990>.
Author: Yixiao Zeng [aut, cre, cph],
Celia Greenwood [ths, aut]
Maintainer: Yixiao Zeng <yixiao.zeng@mail.mcgill.ca>
Diff between missoNet versions 1.2.0 dated 2023-07-19 and 1.5.1 dated 2025-09-02
missoNet-1.2.0/missoNet/R/boundaryCheck.R |only missoNet-1.2.0/missoNet/R/getResCov.R |only missoNet-1.2.0/missoNet/R/maxproj.cov.R |only missoNet-1.2.0/missoNet/R/plot.cv.missoNet.R |only missoNet-1.2.0/missoNet/R/plot.heatmap.R |only missoNet-1.2.0/missoNet/R/plot.scatter.R |only missoNet-1.2.0/missoNet/R/predict.cv.missoNet.R |only missoNet-1.2.0/missoNet/R/simfun.R |only missoNet-1.2.0/missoNet/inst/doc/missoNet.R |only missoNet-1.2.0/missoNet/inst/doc/missoNet.Rmd |only missoNet-1.2.0/missoNet/inst/doc/missoNet.html |only missoNet-1.2.0/missoNet/inst/extdata |only missoNet-1.2.0/missoNet/man/plot.cv.missoNet.Rd |only missoNet-1.2.0/missoNet/man/predict.cv.missoNet.Rd |only missoNet-1.2.0/missoNet/src/updateBeta.cpp |only missoNet-1.2.0/missoNet/vignettes/missoNet.Rmd |only missoNet-1.2.0/missoNet/vignettes/missoNet_refs.bib |only missoNet-1.5.1/missoNet/DESCRIPTION | 60 missoNet-1.5.1/missoNet/MD5 | 86 missoNet-1.5.1/missoNet/NAMESPACE | 18 missoNet-1.5.1/missoNet/NEWS.md | 65 missoNet-1.5.1/missoNet/R/InitLambda.R | 334 ++- missoNet-1.5.1/missoNet/R/InitParams.R | 341 ++- missoNet-1.5.1/missoNet/R/RcppExports.R | 64 missoNet-1.5.1/missoNet/R/cv.missoNet.R | 1104 ++++++---- missoNet-1.5.1/missoNet/R/generateData.R | 538 ++++ missoNet-1.5.1/missoNet/R/helpers.R |only missoNet-1.5.1/missoNet/R/missoNet-package.R | 84 missoNet-1.5.1/missoNet/R/missoNet.R | 799 +++++-- missoNet-1.5.1/missoNet/R/parWrapper.R | 234 +- missoNet-1.5.1/missoNet/R/plot.missoNet.R |only missoNet-1.5.1/missoNet/R/predict.missoNet.R |only missoNet-1.5.1/missoNet/R/relax.glasso.R | 218 + missoNet-1.5.1/missoNet/R/stepOptim.R |only missoNet-1.5.1/missoNet/R/update.missoNet.R | 450 +++- missoNet-1.5.1/missoNet/README.md | 191 + missoNet-1.5.1/missoNet/build/vignette.rds |binary missoNet-1.5.1/missoNet/inst/doc/missoNet-case-study.R |only missoNet-1.5.1/missoNet/inst/doc/missoNet-case-study.Rmd |only missoNet-1.5.1/missoNet/inst/doc/missoNet-case-study.html |only missoNet-1.5.1/missoNet/inst/doc/missoNet-cross-validation.R |only missoNet-1.5.1/missoNet/inst/doc/missoNet-cross-validation.Rmd |only missoNet-1.5.1/missoNet/inst/doc/missoNet-cross-validation.html |only missoNet-1.5.1/missoNet/inst/doc/missoNet-introduction.R |only missoNet-1.5.1/missoNet/inst/doc/missoNet-introduction.Rmd |only missoNet-1.5.1/missoNet/inst/doc/missoNet-introduction.html |only missoNet-1.5.1/missoNet/man/cv.missoNet.Rd | 338 +-- missoNet-1.5.1/missoNet/man/generateData.Rd | 220 + missoNet-1.5.1/missoNet/man/missoNet-package.Rd | 85 missoNet-1.5.1/missoNet/man/missoNet.Rd | 282 +- missoNet-1.5.1/missoNet/man/plot.missoNet.Rd |only missoNet-1.5.1/missoNet/man/predict.missoNet.Rd |only missoNet-1.5.1/missoNet/src/RcppExports.cpp | 242 ++ missoNet-1.5.1/missoNet/src/Utils.cpp |only missoNet-1.5.1/missoNet/src/admm_proj.cpp |only missoNet-1.5.1/missoNet/src/updaBeta.cpp |only missoNet-1.5.1/missoNet/vignettes/missoNet-case-study.Rmd |only missoNet-1.5.1/missoNet/vignettes/missoNet-cross-validation.Rmd |only missoNet-1.5.1/missoNet/vignettes/missoNet-introduction.Rmd |only 59 files changed, 4246 insertions(+), 1507 deletions(-)
Title: Irucka Embry's Miscellaneous USGS Functions
Description: A collection of Irucka Embry's miscellaneous USGS functions
(processing .exp and .psf files, statistical error functions,
"+" dyadic operator for use with NA, creating ADAPS and QW
spreadsheet files, calculating saturated enthalpy). Irucka created these
functions while a Cherokee Nation Technology Solutions (CNTS) United States
Geological Survey (USGS) Contractor and/or USGS employee.
Author: Irucka Embry [aut, cre],
Anne Hoos [ctb],
Timothy H. Diehl [ctb]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between ie2misc versions 0.9.1 dated 2023-09-20 and 0.9.2 dated 2025-09-02
DESCRIPTION | 22 ++++++++++++---- MD5 | 58 +++++++++++++++++++++---------------------- NEWS.md | 10 ++++++- R/adaps.R | 2 - R/dr.R | 6 ++-- R/expFileOutput.R | 4 +- R/madstat.R | 12 ++++---- R/mae.R | 6 ++-- R/mape.R | 6 ++-- R/na_operator.R | 4 +- R/psfFileChange.R | 4 +- R/qw.R | 2 - R/rmse.R | 6 ++-- R/sat_enthalpy.R | 4 +- R/vnse.R | 6 ++-- README.md | 40 +++++++++++++++++++++++------ inst/WORDLIST | 2 + man/adaps.Rd | 2 - man/dr.Rd | 6 ++-- man/expFileOutput.Rd | 4 +- man/grapes-plus-na-grapes.Rd | 4 +- man/ie2misc.Rd | 12 ++++++++ man/madstat.Rd | 12 ++++---- man/mae.Rd | 6 ++-- man/mape.Rd | 6 ++-- man/psfFileChange.Rd | 4 +- man/qw.Rd | 2 - man/rmse.Rd | 6 ++-- man/sat_enthalpy.Rd | 4 +- man/vnse.Rd | 6 ++-- 30 files changed, 162 insertions(+), 106 deletions(-)
Title: Scales that Focus Specific Levels in your ggplot()
Description: A 'ggplot2' extension that provides tools for automatically
creating scales to focus on subgroups of the data plotted
without losing other information.
Author: Victor Freguglia [aut, cre]
Maintainer: Victor Freguglia <victorfreguglia@gmail.com>
Diff between ggfocus versions 1.0.0 dated 2020-01-23 and 1.0.1 dated 2025-09-02
ggfocus-1.0.0/ggfocus/R/ggfocus.R |only ggfocus-1.0.0/ggfocus/man/ggfocus.Rd |only ggfocus-1.0.0/ggfocus/man/reexports.Rd |only ggfocus-1.0.1/ggfocus/DESCRIPTION | 16 ggfocus-1.0.1/ggfocus/MD5 | 42 - ggfocus-1.0.1/ggfocus/NAMESPACE | 5 ggfocus-1.0.1/ggfocus/NEWS.md | 4 ggfocus-1.0.1/ggfocus/R/scale_alpha_focus.R | 8 ggfocus-1.0.1/ggfocus/R/scale_color_focus.R | 9 ggfocus-1.0.1/ggfocus/R/scale_fill_focus.R | 8 ggfocus-1.0.1/ggfocus/R/scale_linetype_focus.R | 8 ggfocus-1.0.1/ggfocus/R/scale_shape_focus.R | 8 ggfocus-1.0.1/ggfocus/R/scale_size_focus.R | 8 ggfocus-1.0.1/ggfocus/R/zzz.R | 6 ggfocus-1.0.1/ggfocus/README.md | 117 +- ggfocus-1.0.1/ggfocus/build/vignette.rds |binary ggfocus-1.0.1/ggfocus/inst/doc/introduction_to_ggfocus.R | 32 ggfocus-1.0.1/ggfocus/inst/doc/introduction_to_ggfocus.Rmd | 12 ggfocus-1.0.1/ggfocus/inst/doc/introduction_to_ggfocus.html | 493 ++++++------ ggfocus-1.0.1/ggfocus/man/figures/README-example_2-1.png |binary ggfocus-1.0.1/ggfocus/man/figures/README-example_2-2.png |only ggfocus-1.0.1/ggfocus/man/figures/README-example_map-1.png |binary ggfocus-1.0.1/ggfocus/tests |only ggfocus-1.0.1/ggfocus/vignettes/introduction_to_ggfocus.Rmd | 12 24 files changed, 440 insertions(+), 348 deletions(-)
Title: Partially Observed Integrated Functional Depth
Description: Integrated Functional Depth for Partially Observed Functional Data and applications to visualization, outlier detection and classification. It implements the methods proposed in: Elías, A., Jiménez, R., Paganoni, A. M. and Sangalli, L. M., (2023), "Integrated Depth for Partially Observed Functional Data", Journal of Computational and Graphical Statistics, <doi:10.1080/10618600.2022.2070171>. Elías, A., Jiménez, R., & Shang, H. L. (2023), "Depth-based reconstruction method for incomplete functional data", Computational Statistics, <doi:10.1007/s00180-022-01282-9>. Elías, A., Nagy, S. (2024), "Statistical properties of partially observed integrated functional depths", TEST, <doi:10.1007/s11749-024-00954-6>.
Author: Antonio Elias [aut, cre],
Raul Jimenez [ctb],
Anna M. Paganoni [ctb],
Laura M. Sangalli [ctb],
Stanislav Nagy [ctb],
Maximiliam Ofner [ctb]
Maintainer: Antonio Elias <antonioefz91@gmail.com>
Diff between fdaPOIFD versions 2.0.0 dated 2025-06-25 and 2.0.1 dated 2025-09-02
DESCRIPTION | 6 +- MD5 | 16 +++--- NEWS.md | 4 + R/POIFD.R | 3 - R/boxplotPOFD.R | 38 ++++++++++++---- R/outliergramPoFD.R | 8 ++- inst/doc/simulation_vig.R | 106 +++++++++++++++++++++++----------------------- man/boxplotPOFD.Rd | 18 ++++++- man/outliergramPOFD.Rd | 4 + 9 files changed, 123 insertions(+), 80 deletions(-)
Title: Citizen Voting Age Population
Description: Works with the Citizen Voting Age Population special tabulation from the US Census Bureau <https://www.census.gov/programs-surveys/decennial-census/about/voting-rights/cvap.html>. Provides tools to download and process raw data. Also provides a downloading interface to processed data. Implements a very basic approach to estimate block level citizen voting age population from block group data.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between cvap versions 0.1.5 dated 2024-03-21 and 0.1.6 dated 2025-09-02
DESCRIPTION | 18 +- LICENSE | 4 MD5 | 64 ++++---- NAMESPACE | 22 +- NEWS.md | 47 +++-- R/cvap-package.R | 20 +- R/data.R | 56 +++---- R/distribute.R | 210 +++++++++++++------------- R/geomander_borrow.R | 58 +++---- R/get.R | 140 ++++++++--------- R/get_raw.R | 54 +++--- R/process.R | 256 ++++++++++++++++---------------- R/url.R | 26 +-- R/utils.R | 144 +++++++++--------- R/vest_crosswalk.R | 48 +++--- README.md | 276 +++++++++++++++++++---------------- inst/extdata/County.csv | 80 +++++----- inst/extdata/Nation.csv | 28 +-- man/cvap_census_url.Rd | 42 ++--- man/cvap_distribute.Rd | 82 +++++----- man/cvap_distribute_censable.Rd | 80 +++++----- man/cvap_get.Rd | 106 ++++++------- man/cvap_get_raw.Rd | 54 +++--- man/cvap_process_dir.Rd | 60 +++---- man/cvap_process_file.Rd | 60 +++---- man/de_block.Rd | 36 ++-- man/de_block_group.Rd | 38 ++-- man/vest_crosswalk.Rd | 50 +++--- tests/testthat.R | 8 - tests/testthat/setup.R | 8 - tests/testthat/test-distribute.R | 10 - tests/testthat/test-get.R | 43 +++-- tests/testthat/test-vest_crosswalk.R | 12 - 33 files changed, 1142 insertions(+), 1098 deletions(-)
Title: Piecewise Structural Equation Modeling
Description: Implements piecewise structural equation modeling from a single
list of structural equations, with new methods for non-linear, latent, and
composite variables, standardized coefficients, query-based prediction and
indirect effects. See <http://jslefche.github.io/piecewiseSEM/> for more.
Author: Jon Lefcheck [aut, cre],
Jarrett Byrnes [aut],
James Grace [aut]
Maintainer: Jon Lefcheck <jslefche@gmail.com>
Diff between piecewiseSEM versions 2.3.0.1 dated 2024-06-11 and 2.3.1 dated 2025-09-02
DESCRIPTION | 12 +++---- MD5 | 60 +++++++++++++++++------------------ NEWS.md | 4 ++ R/AIC_psem.R | 2 - R/LLchisq.R | 2 - R/anova_psem.R | 4 +- R/basisSet.R | 3 + R/cerror.R | 3 + R/coefs.R | 4 +- R/dSep.R | 2 - R/multigroup.R | 2 - R/piecewiseSEM-package.R | 2 - R/psem.R | 3 + R/rsquared.R | 5 ++ R/summary.R | 6 +-- R/zzz.R | 2 - README.md | 4 +- build/vignette.rds |binary inst/doc/piecewiseSEM.html | 4 +- man/AIC_psem.Rd | 2 - man/LLchisq.Rd | 2 - man/anova.psem.Rd | 4 +- man/basisSet.Rd | 2 - man/coefs.Rd | 4 +- man/dSep.Rd | 2 - man/grapes-twiddle-twiddle-grapes.Rd | 2 - man/multigroup.Rd | 2 - man/piecewiseSEM-package.Rd | 2 - man/psem.Rd | 2 - man/rsquared.Rd | 2 - man/summary.psem.Rd | 6 +-- 31 files changed, 83 insertions(+), 73 deletions(-)
Title: Main Package of the EMU Speech Database Management System
Description: Provide the EMU Speech Database Management System (EMU-SDMS) with
database management, data extraction, data preparation and data
visualization facilities. See <https://ips-lmu.github.io/The-EMU-SDMS-Manual/>
for more details.
Author: Markus Jochim [aut, cre] ,
Raphael Winkelmann [aut],
Klaus Jaensch [aut, ctb],
Steve Cassidy [aut, ctb],
Jonathan Harrington [aut, ctb]
Maintainer: Markus Jochim <markusjochim@phonetik.uni-muenchen.de>
Diff between emuR versions 2.5.0 dated 2024-03-15 and 2.5.2 dated 2025-09-02
DESCRIPTION | 17 +++++++++-------- MD5 | 40 ++++++++++++++++++++++------------------ NAMESPACE | 1 + NEWS.md | 19 +++++++++++++++++++ R/emuR-add_signal.R |only R/emuR-convert_BPFCollection.R | 2 +- R/emuR-create_emuRdemoData.R | 22 ++++++++++++++++++++++ R/emuR-export_BPFCollection.R | 2 +- R/emuR-get_trackdata.R | 8 ++++---- R/emuR-query.database.R | 4 ++-- R/emuR-requery.database.R | 4 ++-- R/emuR-server.R | 2 +- README.md | 2 +- inst/scripts |only man/add_signalViaMatlab.Rd |only man/convert_BPFCollection.Rd | 2 +- man/export_BPFCollection.Rd | 2 +- man/get_trackdata.Rd | 6 +++--- man/query.Rd | 4 ++-- man/requery_hier.Rd | 2 +- man/requery_seq.Rd | 2 +- man/serve.Rd | 2 +- 22 files changed, 95 insertions(+), 48 deletions(-)
Title: Bayesian Object Oriented Modeling
Description: A C++ library for Bayesian modeling, with an emphasis on Markov
chain Monte Carlo. Although boom contains a few R utilities (mainly plotting
functions), its primary purpose is to install the BOOM C++ library on your
system so that other packages can link against it.
Author: Steven L. Scott [aut, cre]
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between Boom versions 0.9.15 dated 2024-02-03 and 0.9.16 dated 2025-09-02
DESCRIPTION | 28 ++++++++++++---------------- MD5 | 4 ++-- src/boom_r_tools.cpp | 2 +- 3 files changed, 15 insertions(+), 19 deletions(-)
Title: A Data Interface Between 'GAMS' and R
Description: Read, analyze, modify, and write 'GAMS' (General Algebraic
Modeling System) data. The main focus of 'gamstransfer' is the
highly efficient transfer of data with 'GAMS' <https://www.gams.com/>,
while keeping these operations as simple as possible for the user. The
transfer of data usually takes place via an intermediate GDX (GAMS Data
Exchange) file. Additionally, 'gamstransfer' provides utility
functions to get an overview of 'GAMS' data and to check its validity.
Author: Atharv Bhosekar [aut, cre],
GAMS Development Corp. [cph, fnd],
GAMS Software GmbH [cph, fnd]
Maintainer: Atharv Bhosekar <abhosekar@gams.com>
Diff between gamstransfer versions 3.0.6 dated 2025-06-04 and 3.0.7 dated 2025-09-02
DESCRIPTION | 8 LICENSE | 4 MD5 | 108 NAMESPACE | 20 NEWS.md | 70 R/Alias.R | 758 +- R/BaseAlias.R | 286 R/Container.R | 3538 +++++----- R/DomainViolation.R | 144 R/Equation.R | 1108 +-- R/Parameter.R | 674 +- R/RcppExports.R | 38 R/Set.R | 414 - R/SpecialValues.R | 128 R/Super.R | 340 - R/Symbol.R | 4215 ++++++------ R/UniverseAlias.R | 456 - R/Variable.R | 1122 +-- R/gamstransfer-package.R | 12 R/symbolTypes.R | 120 R/utility.R | 62 README.md | 298 man/Alias.Rd | 36 man/Container.Rd | 92 man/DomainViolation.Rd | 66 man/Equation.Rd | 40 man/Parameter.Rd | 40 man/Set.Rd | 38 man/SpecialValues.Rd | 56 man/UniverseAlias.Rd | 32 man/Variable.Rd | 38 man/dot-Symbol.Rd | 24 man/gamstransfer-package.Rd | 58 man/readGDX.Rd | 52 man/writeGDX.Rd | 82 src/gdx/LICENSE | 44 tests/testthat.R | 58 tests/testthat/data.gdx |binary tests/testthat/diffile.gdx |binary tests/testthat/empty.gdx |binary tests/testthat/foo.gdx |binary tests/testthat/foo.gms | 30 tests/testthat/foo.lst | 62 tests/testthat/foo_1.gdx |binary tests/testthat/gt.gdx |binary tests/testthat/out.gdx |binary tests/testthat/partial_equation.gdx |binary tests/testthat/partial_parameter.gdx |binary tests/testthat/partial_scalar.gdx |binary tests/testthat/partial_scalar_equation.gdx |binary tests/testthat/partial_scalar_variable.gdx |binary tests/testthat/partial_set.gdx |binary tests/testthat/partial_variable.gdx |binary tests/testthat/partial_write.gdx |binary tests/testthat/test-read.R | 9573 ++++++++++++++--------------- 55 files changed, 12175 insertions(+), 12169 deletions(-)
Title: Calculation and Visualization of the Impact Effect Size Measure
Description: A non-parametric effect size measure capturing changes in central tendency or shape of data distributions. The package provides the necessary functions to calculate and plot the Impact effect size measure between two groups.
Author: Jorn Lotsch [aut, cre] ,
Alfred Ultsch [aut]
Maintainer: Jorn Lotsch <j.loetsch@em.uni-frankfurt.de>
Diff between ImpactEffectsize versions 0.7 dated 2024-04-14 and 0.8 dated 2025-09-02
DESCRIPTION | 23 +++++-- MD5 | 11 ++- NAMESPACE | 1 R/Impact.R | 153 +++++++++++++++++++++++++++++++++++++++++------------ R/plot2Densities.R | 87 ++++++++++++++++-------------- README.md |only man/Impact.Rd | 47 +++++++++------- 7 files changed, 215 insertions(+), 107 deletions(-)
More information about ImpactEffectsize at CRAN
Permanent link
Title: Updated US State Facts and Figures
Description: Updated versions of the 1970's "US State Facts and Figures"
objects from the 'datasets' package included with R. The new data is
compiled from a number of sources, primarily from United States Census
Bureau or the relevant federal agency.
Author: Kiernan Nicholls [aut, cre, cph]
Maintainer: Kiernan Nicholls <k5cents@gmail.com>
Diff between usa versions 0.1.2 dated 2024-03-11 and 0.1.3 dated 2025-09-02
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NEWS.md | 4 ++++ R/data.R | 8 ++++---- README.md | 18 +++++++++--------- man/facts.Rd | 8 ++++---- 6 files changed, 32 insertions(+), 28 deletions(-)
Title: Read, Manipulate and Visualise Magnetic Resonance Images
Description: Functions for working with magnetic resonance images. Reading and
writing of popular file formats (DICOM, Analyze, NIfTI-1, NIfTI-2, MGH);
interactive and non-interactive visualisation; flexible image manipulation;
metadata and sparse image handling.
Author: Jon Clayden [cre, aut]
Maintainer: Jon Clayden <code@clayden.org>
Diff between tractor.base versions 3.4.2 dated 2024-02-27 and 3.4.5.1 dated 2025-09-02
DESCRIPTION | 16 +++++++++------- MD5 | 8 ++++---- R/misc.R | 3 ++- build/partial.rdb |binary man/printLabelledValues.Rd | 3 ++- 5 files changed, 17 insertions(+), 13 deletions(-)
Title: Structural Modeling for Multiple Latent Class Variables
Description: Provides comprehensive tools for the implementation of Structural Latent Class Models (SLCM), including
Latent Transition Analysis (LTA; Linda M. Collins and Stephanie T. Lanza, 2009) <doi:10.1002/9780470567333>,
Latent Class Profile Analysis (LCPA; Hwan Chung et al., 2010) <doi:10.1111/j.1467-985x.2010.00674.x>, and
Joint Latent Class Analysis (JLCA; Saebom Jeon et al., 2017) <doi:10.1080/10705511.2017.1340844>, and
any other extended models involving multiple latent class variables.
Author: Youngsun Kim [aut, cre] ,
Hwan Chung [aut]
Maintainer: Youngsun Kim <yskstat@gmail.com>
Diff between slca versions 1.3.2 dated 2025-08-24 and 1.4.0 dated 2025-09-02
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- R/estModel.R | 32 +++++++++++++++++--------------- R/estimate.R | 2 +- R/methods.R | 7 +++---- R/regress.R | 39 +++++++++++++++------------------------ R/slcaControl.R | 5 +++-- man/addhealth.Rd | 2 +- man/examples/addhealth.R | 2 +- man/regress.Rd | 6 +++--- man/slcaControl.Rd | 3 +++ 11 files changed, 60 insertions(+), 64 deletions(-)
Title: Parsing, Computation, and Diagnostics for Greenhouse Gas
Measurements
Description: Parse static-chamber greenhouse gas measurement
files generated by a variety of instruments; compute flux rates using
multi-observation metadata; and generate diagnostic metrics and plots.
Designed to be easy to integrate into reproducible scientific workflows.
Author: Stephanie Wilson [cre] ,
Ben Bond-Lamberty [aut] ,
Genevieve Noyce [ctb] ,
Roberta Bittencourt Peixoto [ctb] ,
Patrick Megonigal [ctb] ,
Smithsonian Institution [cph, fnd]
Maintainer: Stephanie Wilson <sjw22120@gmail.com>
Diff between fluxfinder versions 1.2.0 dated 2025-08-21 and 1.2.1 dated 2025-09-02
DESCRIPTION | 6 +++--- MD5 | 4 ++-- NEWS.md | 9 ++++----- 3 files changed, 9 insertions(+), 10 deletions(-)
Title: Common Functionality for the 'dynverse' Packages
Description: Provides common functionality for the 'dynverse' packages.
'dynverse' is created to support the development, execution, and benchmarking of trajectory inference methods.
For more information, check out <https://dynverse.org>.
Author: Robrecht Cannoodt [aut, cre] ,
Wouter Saelens [aut]
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between dynutils versions 1.0.11 dated 2022-10-11 and 1.0.12 dated 2025-09-02
DESCRIPTION | 18 MD5 | 24 NEWS.md | 4 R/mapdf.R | 2 README.md | 9 build/vignette.rds |binary inst/doc/functionality.R | 10 inst/doc/functionality.html | 934 +++++++++++++++++++------------ man/add_class.Rd | 2 man/calculate_distance.Rd | 4 man/dynutils.Rd | 18 man/mapdf.Rd | 16 tests/testthat/test-calculate_distance.R | 4 13 files changed, 659 insertions(+), 386 deletions(-)
Title: Power and Sample Size Calculations for Bayes Factor Analysis
Description: Implements z-test, t-test, and normal moment prior Bayes factors based on summary statistics, along with functionality to perform corresponding power and sample size calculations as described in Pawel and Held (2025) <doi:10.1080/00031305.2025.2467919>.
Author: Samuel Pawel [aut, cre]
Maintainer: Samuel Pawel <samuel.pawel@uzh.ch>
Diff between bfpwr versions 0.1.5 dated 2025-05-15 and 0.1.6 dated 2025-09-02
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/ptbf01.R | 7 ++++--- inst/doc/using-bfpwr.R | 2 +- inst/doc/using-bfpwr.pdf |binary 6 files changed, 19 insertions(+), 14 deletions(-)
Title: Vertical Profiles of Biological Signals in Weather Radar Data
Description: 'R' implementation of the 'vol2bird' software for generating vertical profiles
of birds and other biological signals in weather radar data. See Dokter et al.
(2011) <doi:10.1098/rsif.2010.0116> for a paper describing the methodology.
Author: Anders Henja [aut] ,
Adriaan M. Dokter [aut, cre] ,
Alexander Tedeschi [ctb] ,
Tsung-Yu Lin [ctb] ,
Subranshu Maji [ctb] ,
Daniel Sheldon [ctb] ,
Bart Kranstauber [ctb] ,
Jurriaan H. Spaaks [ctb] ,
Lourens Veen [ctb] ,
Iwan Holleman [ctb] ,
Hidde Lei [...truncated...]
Maintainer: Adriaan M. Dokter <vol2birdr@cornell.edu>
Diff between vol2birdR versions 1.1.1 dated 2025-06-25 and 1.2.0 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 7 +++++++ R/rsl2odim.R | 2 +- R/vol2bird.R | 16 ++++++++++++---- inst/COPYRIGHTS | 22 ---------------------- man/vol2bird.Rd | 16 ++++++++++++---- src/librsl/gzip.c | 15 +++++++++------ src/librsl/wsr88d.c | 2 +- src/librsl/wsr88d_to_radar.c | 9 +++++++-- 10 files changed, 62 insertions(+), 53 deletions(-)
Title: Meta-Analysis Methods Correcting for Publication Bias
Description: Provides meta-analysis methods that correct for
publication bias and outcome reporting bias. Four methods and a visual tool
are currently included in the package. The p-uniform method as described in
van Assen, van Aert, and Wicherts (2015) <doi:10.1037/met0000025>
can be used for estimating the average effect size, testing the null hypothesis
of no effect, and testing for publication bias using only the statistically
significant effect sizes of primary studies. The second method in the package
is the p-uniform* method as described in van Aert and van Assen (2023)
<doi:10.31222/osf.io/zqjr9>. This method is an extension of the p-uniform
method that allows for estimation of the average effect size and the
between-study variance in a meta-analysis, and uses both the statistically
significant and nonsignificant effect sizes. The third method in the package
is the hybrid method as described in van Aert and van Assen (2018)
<doi:10.3758/s13428-017-0967-6>. The hybrid metho [...truncated...]
Author: Robbie C.M. van Aert [aut, cre]
Maintainer: Robbie C.M. van Aert <R.C.M.vanAert@tilburguniversity.edu>
Diff between puniform versions 0.2.7 dated 2023-09-19 and 0.2.8 dated 2025-09-02
DESCRIPTION | 51 +++++++++++++++++++++++------------------- MD5 | 28 +++++++++++------------ NEWS.md | 17 ++++++++++++++ R/escompute.R | 4 +-- R/esest_nsig.R | 14 ++++++++++- R/hy.R | 10 ++------ R/hybrid.R | 66 ++++++++++++++++++++++++++----------------------------- R/puni_star.R | 6 ++--- R/repl.R | 7 ----- R/snapshot.R | 45 ++++++++++++++++++++++++------------- R/zzz.R | 2 - README.md | 19 +++++++++------ man/escompute.Rd | 2 - man/hybrid.Rd | 11 +++++---- man/puni_star.Rd | 4 +-- 15 files changed, 161 insertions(+), 125 deletions(-)
Title: Geographical Ecology and Conservation Knowledge Online
Description: Includes a collection of geographical analysis functions aimed primarily at ecology and conservation science studies, allowing processing of both point and raster data. Now integrates SPECTRE (<https://biodiversityresearch.org/spectre/>), a dataset of global geospatial threat data, developed by the authors.
Author: Vasco V. Branco [cre, aut] ,
Pedro Cardoso [aut] ,
Luis Correia [ctb]
Maintainer: Vasco V. Branco <vasco.branco@helsinki.fi>
Diff between gecko versions 1.0.1 dated 2024-12-17 and 1.0.2 dated 2025-09-02
DESCRIPTION | 24 +- MD5 | 32 +-- NAMESPACE | 13 + R/access_fn.R | 1 R/aux_fn.R | 38 ++++ R/globals.R | 69 ++++++- R/outlier_fn.R | 368 ++++++++++++++++++++++++++++++++++++++++- R/spatial_fn.R | 5 inst/extdata/gecko.records.csv | 88 ++++++++- man/distance.Rd | 1 man/gecko.data.Rd | 20 +- man/gecko.setDir.Rd | 7 man/gecko.worldclim.Rd | 2 man/gecko.worldclim.load.Rd |only man/outliers.detect.Rd | 3 man/outliers.detect.mass.Rd |only man/outliers.visualize.Rd | 1 man/spectre.points.Rd | 1 18 files changed, 599 insertions(+), 74 deletions(-)
Title: Dynamic Models with Regime-Switching
Description: Intensive longitudinal data have become increasingly prevalent in
various scientific disciplines. Many such data sets are noisy, multivariate,
and multi-subject in nature. The change functions may also be continuous,
or continuous but interspersed with periods of discontinuities (i.e.,
showing regime switches). The package 'dynr' (Dynamic Modeling in R) is an
R package that implements a set of computationally efficient algorithms for
handling a broad class of linear and nonlinear discrete- and continuous-time
models with regime-switching properties under the constraint of linear
Gaussian measurement functions. The discrete-time models can generally
take on the form of a state-space or difference equation model. The
continuous-time models are generally expressed as a set of ordinary or
stochastic differential equations. All estimation and computations are
performed in C, but users are provided with the option to specify the
model of interest via a set of simple and easy-to-learn model s [...truncated...]
Author: Lu Ou [aut],
Michael D. Hunter [aut, cre] ,
Sy-Miin Chow [aut] ,
Linying Ji [aut],
Meng Chen [aut],
Hui-Ju Hung [aut],
Jungmin Lee [aut],
Yanling Li [aut],
Jonathan Park [aut],
Massachusetts Institute of Technology [cph],
S. G. Johnson [cph],
Benoit [...truncated...]
Maintainer: Michael D. Hunter <mike.dynr@gmail.com>
Diff between dynr versions 0.1.16-105 dated 2023-11-28 and 0.1.16-114 dated 2025-09-02
DESCRIPTION | 13 MD5 | 40 +- R/dynrCook.R | 6 R/dynrData.R | 12 R/dynrModel.R | 10 R/dynrPredict.R | 11 R/dynrVersion.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/InstallationForDevelopers.Rnw | 428 ++++++++++++++--------------- inst/doc/InstallationForDevelopers.pdf |binary inst/doc/InstallationForUsers.Rnw | 296 ++++++++++---------- inst/doc/InstallationForUsers.pdf |binary inst/doc/LinearDiscreteTimeModels.pdf |binary inst/doc/NonlinearContinuousTimeModels.pdf |binary inst/doc/linearSDE.R | 12 man/dynr.cook.Rd | 2 man/dynr.data.Rd | 2 src/nldrmd.c | 2 vignettes/InstallationForDevelopers.Rnw | 428 ++++++++++++++--------------- vignettes/InstallationForUsers.Rnw | 296 ++++++++++---------- 21 files changed, 785 insertions(+), 775 deletions(-)
Title: Graphs and Tables for OMOP Results
Description: Provides methods to transform omop_result objects into
formatted tables and figures, facilitating the visualisation of study
results working with the Observational Medical Outcomes Partnership
(OMOP) Common Data Model.
Author: Marti Catala [aut] ,
Nuria Mercade-Besora [aut, cre] ,
Yuchen Guo [ctb] ,
Elin Rowlands [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Edward Burn [ctb]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between visOmopResults versions 1.1.1 dated 2025-06-19 and 1.2.0 dated 2025-09-02
DESCRIPTION | 9 MD5 | 96 +- NAMESPACE | 4 NEWS.md | 63 + R/datatableInternal.R | 244 +++---- R/documentationHelper.R |only R/formatTable.R | 404 ++++++------ R/fxTable.R | 147 ---- R/gtTable.R | 668 ++++++++++---------- R/helperFunctions.R | 491 ++++++--------- R/plot.R | 1013 +++++++++++++++---------------- R/plottingThemes.R | 194 +++-- R/reactableInternal.R | 188 ++--- R/tableStyles.R | 556 ++++++++++------- R/tidy.R | 132 ++-- R/tinyTable.R |only R/utilities.R | 612 +++++++++--------- R/visOmopResults-package.R | 1 R/visOmopTable.R | 531 +++++++--------- R/visTable.R | 44 - README.md | 15 build/vignette.rds |binary inst/doc/a01_tables.R | 8 inst/doc/a01_tables.Rmd | 927 ++++++++++++++-------------- inst/doc/a01_tables.html | 653 +++++++++---------- inst/doc/a02_plots.R | 23 inst/doc/a02_plots.Rmd | 27 inst/doc/a02_plots.html | 59 + man/barPlot.Rd | 7 man/boxPlot.Rd | 15 man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/plotDoc.Rd |only man/scatterPlot.Rd | 9 man/setGlobalPlotOptions.Rd |only man/setGlobalTableOptions.Rd |only man/tableDoc.Rd |only man/themeDarwin.Rd |only man/themeVisOmop.Rd | 2 man/visTable.Rd | 14 tests/testthat/_snaps/formatTable.new.md |only tests/testthat/setup.R |only tests/testthat/test-datatableInternal.R | 62 - tests/testthat/test-formatTable.R | 211 +++--- tests/testthat/test-fxTable.R | 52 - tests/testthat/test-gtTable.R | 668 ++++++++++---------- tests/testthat/test-helperFunctions.R | 357 +++++----- tests/testthat/test-plot.R | 48 + tests/testthat/test-reactableInternal.R | 78 +- tests/testthat/test-tinyTable.R |only tests/testthat/test-visOmopTable.R | 840 +++++++++++++------------ tests/testthat/test-visTable.R | 330 +++++----- vignettes/a01_tables.Rmd | 927 ++++++++++++++-------------- vignettes/a02_plots.Rmd | 27 54 files changed, 5419 insertions(+), 5337 deletions(-)
More information about visOmopResults at CRAN
Permanent link
Title: Single-Case Data Analyses for Single and Multiple Baseline
Designs
Description: A collection of procedures for analysing, visualising,
and managing single-case data. These include regression models
(multilevel, multivariate, bayesian), between case standardised mean difference,
overlap indices ('PND', 'PEM', 'PAND', 'PET', 'tau-u', 'IRD', 'baseline corrected tau',
'CDC'), and randomization tests. Data preparation functions support outlier
detection, handling missing values, scaling, and custom transformations.
An export function helps to generate html, word, and latex tables in a
publication friendly style. A shiny app allows to use scan in a graphical
user interface.
More details can be found in the online book 'Analyzing single-case data with
R and scan', Juergen Wilbert (2025)
<https://jazznbass.github.io/scan-Book/>.
Author: Juergen Wilbert [cre, aut] ,
Timo Lueke [aut]
Maintainer: Juergen Wilbert <juergen.wilbert@uni-muenster.de>
Diff between scan versions 0.65.1 dated 2025-07-13 and 0.66.0 dated 2025-09-02
scan-0.65.1/scan/R/print.sc_bcsmd.R |only scan-0.65.1/scan/R/print.sc_hplm.R |only scan-0.65.1/scan/inst/shiny |only scan-0.66.0/scan/DESCRIPTION | 29 ++- scan-0.66.0/scan/MD5 | 129 ++++++++--------- scan-0.66.0/scan/NAMESPACE | 4 scan-0.66.0/scan/NEWS.md | 34 ++++ scan-0.66.0/scan/R/as_scdf.R | 23 ++- scan-0.66.0/scan/R/autocorr.R | 4 scan-0.66.0/scan/R/between_smd.R | 181 ++++++++++++++++++------ scan-0.66.0/scan/R/bplm.R | 5 scan-0.66.0/scan/R/cdc.R | 4 scan-0.66.0/scan/R/corrected_tau.R | 4 scan-0.66.0/scan/R/describe.R | 4 scan-0.66.0/scan/R/design.R | 33 +++- scan-0.66.0/scan/R/estimate_design.R | 4 scan-0.66.0/scan/R/export.R | 8 - scan-0.66.0/scan/R/export.sc_hplm.R | 138 ------------------ scan-0.66.0/scan/R/export.scdf_summary.R | 12 - scan-0.66.0/scan/R/fill_missing.R | 4 scan-0.66.0/scan/R/hplm.R | 105 +++++++++---- scan-0.66.0/scan/R/importer-gadget.R |only scan-0.66.0/scan/R/message-system.R | 4 scan-0.66.0/scan/R/mplm.R | 4 scan-0.66.0/scan/R/nap.R | 3 scan-0.66.0/scan/R/outlier.R | 4 scan-0.66.0/scan/R/pand.R | 3 scan-0.66.0/scan/R/pem.R | 3 scan-0.66.0/scan/R/pet.R | 3 scan-0.66.0/scan/R/plm.R | 25 +-- scan-0.66.0/scan/R/pnd.R | 3 scan-0.66.0/scan/R/print-export-bcsmd.R |only scan-0.66.0/scan/R/print-export-bplm.R | 5 scan-0.66.0/scan/R/print-export-hplm.R |only scan-0.66.0/scan/R/print-export-plm.R | 8 - scan-0.66.0/scan/R/print.sc_bctau.R | 5 scan-0.66.0/scan/R/private-utilities.R | 29 +++ scan-0.66.0/scan/R/private_check.R | 27 +++ scan-0.66.0/scan/R/private_options.R | 6 scan-0.66.0/scan/R/rand_test.R | 3 scan-0.66.0/scan/R/rci.R | 3 scan-0.66.0/scan/R/read_scdf.R | 12 - scan-0.66.0/scan/R/rescale.R | 28 +-- scan-0.66.0/scan/R/scan.R | 1 scan-0.66.0/scan/R/scdf.R | 6 scan-0.66.0/scan/R/shinyscan.R | 64 ++++---- scan-0.66.0/scan/R/smd.R | 5 scan-0.66.0/scan/R/tau_u.R | 3 scan-0.66.0/scan/R/transform-helper-functions.R | 36 ++++ scan-0.66.0/scan/R/transform.scdf.R | 38 ++--- scan-0.66.0/scan/R/trend.R | 4 scan-0.66.0/scan/README.md | 19 +- scan-0.66.0/scan/inst/CITATION | 2 scan-0.66.0/scan/inst/rstudio/addins.dcf | 12 + scan-0.66.0/scan/inst/shiny_scan |only scan-0.66.0/scan/man/between_smd.Rd | 47 +++++- scan-0.66.0/scan/man/design.Rd | 4 scan-0.66.0/scan/man/fill_missing.Rd | 4 scan-0.66.0/scan/man/hplm.Rd | 36 ++-- scan-0.66.0/scan/man/import_scdf.Rd |only scan-0.66.0/scan/man/read_scdf.Rd | 6 scan-0.66.0/scan/man/scan-package.Rd | 2 scan-0.66.0/scan/man/shinyscan.Rd | 6 scan-0.66.0/scan/man/transform.scdf.Rd | 58 +++++-- scan-0.66.0/scan/tests/testthat/test-hplm.R | 12 + scan-0.66.0/scan/tests/testthat/test-smd.R |only 66 files changed, 753 insertions(+), 515 deletions(-)
Title: Diversity Indices for Numerical Matrices
Description: Provides methods for calculating diversity indices on numerical
matrices, based on information theory, following Rocchini, Marcantonio
and Ricotta (2017) <doi:10.1016/j.ecolind.2016.07.039> and Rocchini et al.
(2021) <doi:10.1101/2021.01.23.427872>.
Author: Matteo Marcantonio [aut, cre],
Martina Iannacito [ctb] ,
Elisa Marchetto [ctb] ,
Elisa Thouverai [ctb] ,
Michele Torresani [ctb] ,
Daniele Da Re [ctb] ,
Clara Tattoni [ctb] ,
Giovanni Bacaro [ctb] ,
Saverio Vicario [aut],
Carlo Ricotta [ctb] ,
Duccio [...truncated...]
Maintainer: Matteo Marcantonio <marcantoniomatteo@gmail.com>
Diff between rasterdiv versions 0.3.7 dated 2025-09-01 and 0.3.8 dated 2025-09-02
DESCRIPTION | 8 +-- MD5 | 18 ++++---- NEWS.md | 6 ++ inst/doc/rasterdiv_01_Basics.html | 4 - inst/doc/rasterdiv_02_Area_based_Rao.html | 4 - inst/doc/rasterdiv_03_Advanced_multidimension_Rao.html | 4 - inst/doc/rasterdiv_04_Accumulation_Rao.R | 20 ++++++++ inst/doc/rasterdiv_04_Accumulation_Rao.Rmd | 20 ++++++++ inst/doc/rasterdiv_04_Accumulation_Rao.html | 38 ++++++++++++----- vignettes/rasterdiv_04_Accumulation_Rao.Rmd | 20 ++++++++ 10 files changed, 105 insertions(+), 37 deletions(-)
Title: Download 'nflverse' Data
Description: A minimal package for downloading data from 'GitHub'
repositories of the 'nflverse' project.
Author: Tan Ho [aut, cre, cph] ,
Sebastian Carl [aut],
John Edwards [ctb],
Ben Baldwin [ctb],
Thomas Mock [ctb],
Lee Sharpe [ctb],
Pranav Rajaram [ctb]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between nflreadr versions 1.4.1 dated 2024-07-29 and 1.5.0 dated 2025-09-02
nflreadr-1.4.1/nflreadr/R/load_player_stats.R |only nflreadr-1.4.1/nflreadr/data/dictionary_player_stats_def.rda |only nflreadr-1.4.1/nflreadr/inst/doc/dictionary_player_stats_def.R |only nflreadr-1.4.1/nflreadr/inst/doc/dictionary_player_stats_def.Rmd |only nflreadr-1.4.1/nflreadr/inst/doc/dictionary_player_stats_def.html |only nflreadr-1.4.1/nflreadr/man/dictionary_player_stats_def.Rd |only nflreadr-1.4.1/nflreadr/vignettes/dictionary_player_stats_def.Rmd |only nflreadr-1.5.0/nflreadr/DESCRIPTION | 16 nflreadr-1.5.0/nflreadr/MD5 | 231 nflreadr-1.5.0/nflreadr/NAMESPACE | 1 nflreadr-1.5.0/nflreadr/NEWS.md | 122 nflreadr-1.5.0/nflreadr/R/data.R | 29 nflreadr-1.5.0/nflreadr/R/from_url.R | 76 nflreadr-1.5.0/nflreadr/R/load_combine.R | 9 nflreadr-1.5.0/nflreadr/R/load_contracts.R | 10 nflreadr-1.5.0/nflreadr/R/load_depth_charts.R | 24 nflreadr-1.5.0/nflreadr/R/load_draft_picks.R | 10 nflreadr-1.5.0/nflreadr/R/load_espn_qbr.R | 34 nflreadr-1.5.0/nflreadr/R/load_ffverse.R | 57 nflreadr-1.5.0/nflreadr/R/load_ftn_charting.R | 29 nflreadr-1.5.0/nflreadr/R/load_injuries.R | 23 nflreadr-1.5.0/nflreadr/R/load_nextgen_stats.R | 33 nflreadr-1.5.0/nflreadr/R/load_officials.R | 15 nflreadr-1.5.0/nflreadr/R/load_participation.R | 72 nflreadr-1.5.0/nflreadr/R/load_pbp.R | 32 nflreadr-1.5.0/nflreadr/R/load_pfr_advstats.R | 83 nflreadr-1.5.0/nflreadr/R/load_players.R | 37 nflreadr-1.5.0/nflreadr/R/load_rosters.R | 22 nflreadr-1.5.0/nflreadr/R/load_rosters_weekly.R | 28 nflreadr-1.5.0/nflreadr/R/load_schedules.R | 25 nflreadr-1.5.0/nflreadr/R/load_snap_counts.R | 31 nflreadr-1.5.0/nflreadr/R/load_stats.R |only nflreadr-1.5.0/nflreadr/R/load_teams.R | 14 nflreadr-1.5.0/nflreadr/R/load_trades.R | 17 nflreadr-1.5.0/nflreadr/R/utils.R | 78 nflreadr-1.5.0/nflreadr/R/utils_cache_clear.R | 3 nflreadr-1.5.0/nflreadr/R/utils_cran.R | 10 nflreadr-1.5.0/nflreadr/R/utils_date.R | 40 nflreadr-1.5.0/nflreadr/R/utils_download_nflverse.R | 144 nflreadr-1.5.0/nflreadr/R/utils_gameid.R | 27 nflreadr-1.5.0/nflreadr/R/utils_join_coalesce.R | 36 nflreadr-1.5.0/nflreadr/R/utils_mode.R | 8 nflreadr-1.5.0/nflreadr/R/utils_name_cleaning.R | 160 nflreadr-1.5.0/nflreadr/R/utils_nflverse_data_class.R | 47 nflreadr-1.5.0/nflreadr/R/utils_progressively.R | 9 nflreadr-1.5.0/nflreadr/R/utils_sitrep.R | 241 nflreadr-1.5.0/nflreadr/R/zzz.R | 153 nflreadr-1.5.0/nflreadr/build/vignette.rds |binary nflreadr-1.5.0/nflreadr/data/dictionary_combine.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_contracts.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_depth_charts.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_draft_picks.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_espn_qbr.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_ff_opportunity.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_ff_playerids.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_ff_rankings.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_ftn_charting.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_injuries.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_nextgen_stats.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_participation.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_pbp.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_pfr_passing.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_player_stats.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_players.rda |only nflreadr-1.5.0/nflreadr/data/dictionary_roster_status.rda |only nflreadr-1.5.0/nflreadr/data/dictionary_rosters.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_schedules.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_snap_counts.rda |binary nflreadr-1.5.0/nflreadr/data/dictionary_team_stats.rda |only nflreadr-1.5.0/nflreadr/data/dictionary_trades.rda |binary nflreadr-1.5.0/nflreadr/data/nflverse_data_timezone.rda |only nflreadr-1.5.0/nflreadr/data/player_name_mapping.rda |binary nflreadr-1.5.0/nflreadr/data/team_abbr_mapping.rda |binary nflreadr-1.5.0/nflreadr/data/team_abbr_mapping_norelocate.rda |binary nflreadr-1.5.0/nflreadr/inst/doc/dictionary_depth_charts.Rmd | 2 nflreadr-1.5.0/nflreadr/inst/doc/dictionary_depth_charts.html | 81 nflreadr-1.5.0/nflreadr/inst/doc/dictionary_espn_qbr.R | 12 nflreadr-1.5.0/nflreadr/inst/doc/dictionary_espn_qbr.html | 3041 ----- nflreadr-1.5.0/nflreadr/inst/doc/dictionary_ff_opportunity.R | 12 nflreadr-1.5.0/nflreadr/inst/doc/dictionary_ff_opportunity.html | 4486 +++----- nflreadr-1.5.0/nflreadr/inst/doc/dictionary_participation.html | 74 nflreadr-1.5.0/nflreadr/inst/doc/dictionary_pbp.R | 12 nflreadr-1.5.0/nflreadr/inst/doc/dictionary_pbp.html | 5098 ++++------ nflreadr-1.5.0/nflreadr/inst/doc/dictionary_player_stats.R | 13 nflreadr-1.5.0/nflreadr/inst/doc/dictionary_player_stats.Rmd | 11 nflreadr-1.5.0/nflreadr/inst/doc/dictionary_player_stats.html | 3545 +----- nflreadr-1.5.0/nflreadr/inst/doc/dictionary_players.R |only nflreadr-1.5.0/nflreadr/inst/doc/dictionary_players.Rmd |only nflreadr-1.5.0/nflreadr/inst/doc/dictionary_players.html |only nflreadr-1.5.0/nflreadr/inst/doc/dictionary_roster_status.R |only nflreadr-1.5.0/nflreadr/inst/doc/dictionary_roster_status.Rmd |only nflreadr-1.5.0/nflreadr/inst/doc/dictionary_roster_status.html |only nflreadr-1.5.0/nflreadr/inst/doc/dictionary_rosters.R | 12 nflreadr-1.5.0/nflreadr/inst/doc/dictionary_rosters.html | 3117 ------ nflreadr-1.5.0/nflreadr/inst/doc/dictionary_schedules.R | 12 nflreadr-1.5.0/nflreadr/inst/doc/dictionary_schedules.html | 3176 ------ nflreadr-1.5.0/nflreadr/inst/doc/dictionary_team_stats.R |only nflreadr-1.5.0/nflreadr/inst/doc/dictionary_team_stats.Rmd |only nflreadr-1.5.0/nflreadr/inst/doc/dictionary_team_stats.html |only nflreadr-1.5.0/nflreadr/inst/doc/exporting_nflreadr.R | 52 nflreadr-1.5.0/nflreadr/inst/doc/exporting_nflreadr.html | 3 nflreadr-1.5.0/nflreadr/man/clean_team_abbrs.Rd | 9 nflreadr-1.5.0/nflreadr/man/csv_from_url.Rd | 11 nflreadr-1.5.0/nflreadr/man/dictionary_depth_charts.Rd | 2 nflreadr-1.5.0/nflreadr/man/dictionary_participation.Rd | 2 nflreadr-1.5.0/nflreadr/man/dictionary_player_stats.Rd | 2 nflreadr-1.5.0/nflreadr/man/dictionary_players.Rd |only nflreadr-1.5.0/nflreadr/man/dictionary_roster_status.Rd |only nflreadr-1.5.0/nflreadr/man/dictionary_rosters.Rd | 2 nflreadr-1.5.0/nflreadr/man/dictionary_team_stats.Rd |only nflreadr-1.5.0/nflreadr/man/get_current_week.Rd | 4 nflreadr-1.5.0/nflreadr/man/load_depth_charts.Rd | 4 nflreadr-1.5.0/nflreadr/man/load_ftn_charting.Rd | 2 nflreadr-1.5.0/nflreadr/man/load_participation.Rd | 14 nflreadr-1.5.0/nflreadr/man/load_player_stats.Rd | 38 nflreadr-1.5.0/nflreadr/man/load_players.Rd | 34 nflreadr-1.5.0/nflreadr/man/load_team_stats.Rd |only nflreadr-1.5.0/nflreadr/man/nflverse_data_timezone.Rd |only nflreadr-1.5.0/nflreadr/tests/testthat/test-ffverse.R | 9 nflreadr-1.5.0/nflreadr/tests/testthat/test-from_url.R | 58 nflreadr-1.5.0/nflreadr/tests/testthat/test-nflverse.R | 138 nflreadr-1.5.0/nflreadr/tests/testthat/test-utils_date.R | 8 nflreadr-1.5.0/nflreadr/tests/testthat/test-utils_join_coalesce.R | 23 nflreadr-1.5.0/nflreadr/tests/testthat/test-utils_mode.R | 12 nflreadr-1.5.0/nflreadr/tests/testthat/test-utils_name_cleaning.R | 152 nflreadr-1.5.0/nflreadr/tests/testthat/test-utils_sitrep.R | 18 nflreadr-1.5.0/nflreadr/vignettes/dictionary_depth_charts.Rmd | 2 nflreadr-1.5.0/nflreadr/vignettes/dictionary_player_stats.Rmd | 11 nflreadr-1.5.0/nflreadr/vignettes/dictionary_players.Rmd |only nflreadr-1.5.0/nflreadr/vignettes/dictionary_roster_status.Rmd |only nflreadr-1.5.0/nflreadr/vignettes/dictionary_team_stats.Rmd |only 131 files changed, 6937 insertions(+), 18413 deletions(-)
Title: Tools Developed by the Long Term Ecological Research Community
Description: Set of the data science tools created by various members of the Long Term
Ecological Research (LTER) community. These functions were initially written largely
as standalone operations and have later been aggregated into this package.
Author: Nicholas Lyon [aut, cre] ,
Angel Chen [aut] ,
Miguel C. Leon [ctb] ,
National Science Foundation [fnd] ,
University of California, Santa Barbara [cph]
Maintainer: Nicholas Lyon <lyon@nceas.ucsb.edu>
Diff between ltertools versions 2.0.0 dated 2025-03-26 and 2.1.0 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 19 ++++++++++++------- R/standardize.R | 3 ++- tests/testthat/test-site_timeline.R | 2 +- 5 files changed, 23 insertions(+), 17 deletions(-)
Title: Exploring Water Quality Monitoring Data
Description: Functions to assist in the processing and
exploration of data from environmental monitoring programs.
The package name stands for "water quality" and reflects the
original focus on time series data for physical and chemical
properties of water, as well as the biota. Intended for
programs that sample approximately monthly, quarterly or
annually at discrete stations, a feature of many legacy data
sets. Most of the functions should be useful for analysis of
similar-frequency time series regardless of the subject
matter.
Author: Alan Jassby [aut],
James Cloern [ctb],
Jemma Stachelek [ctb, cre]
Maintainer: Jemma Stachelek <jemma.stachelek@gmail.com>
Diff between wql versions 1.0.2 dated 2025-01-23 and 1.0.3 dated 2025-09-02
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 +++++ R/eofNum.R | 2 +- inst/doc/wql-package.html | 8 ++++---- man/sfbay.Rd | 3 +-- man/wql-package.Rd | 1 - 7 files changed, 20 insertions(+), 17 deletions(-)
Title: Access Color Names Using a Standardized Nomenclature
Description: A curated set of colors that are called using
a standardized syntax: saturation + hue + lightness. For example,
"brightblue4" and "mutedred2". Functions exists to return individual colors
by name or to build palettes across or within hues. Most functions allow you
to visualize the palettes in addition to returning the desired hex codes.
Author: Jake Riley [aut, cre]
Maintainer: Jake Riley <rjake@sas.upenn.edu>
Diff between simplecolors versions 0.1.3 dated 2025-08-22 and 0.1.4 dated 2025-09-02
DESCRIPTION | 6 +-- MD5 | 22 +++++------ NAMESPACE | 3 + NEWS.md | 3 + R/build_colors.R | 27 +++++++++----- inst/doc/intro.R | 6 +-- inst/doc/intro.Rmd | 12 ++---- inst/doc/intro.html | 75 ++++++++++++++++++--------------------- tests/testthat/test-sc_across.R | 2 - tests/testthat/test-sc_within.R | 2 - vignettes/images/show_colors.png |binary vignettes/intro.Rmd | 12 ++---- 12 files changed, 90 insertions(+), 80 deletions(-)
Title: Recurrent Event Data Analysis
Description: Contains implementations of recurrent event data analysis routines
including (1) survival and recurrent event data simulation from
stochastic process point of view by the thinning method
proposed by Lewis and Shedler (1979) <doi:10.1002/nav.3800260304>
and the inversion method introduced in Cinlar (1975, ISBN:978-0486497976),
(2) the mean cumulative function (MCF) estimation by the
Nelson-Aalen estimator of the cumulative hazard rate function,
(3) two-sample recurrent event responses comparison with the pseudo-score
tests proposed by Lawless and Nadeau (1995) <doi:10.2307/1269617>,
(4) gamma frailty model with spline rate function following
Fu, et al. (2016) <doi:10.1080/10543406.2014.992524>.
Author: Wenjie Wang [aut, cre] ,
Haoda Fu [aut],
Sy Han Chiou [ctb],
Jun Yan [ctb]
Maintainer: Wenjie Wang <wang@wwenjie.org>
Diff between reda versions 0.5.5 dated 2025-06-14 and 0.5.6 dated 2025-09-02
DESCRIPTION | 11 +++---- MD5 | 24 +++++++-------- NAMESPACE | 13 -------- NEWS.md | 9 +++++ R/misc.R | 10 ++++++ R/plot.R | 66 +++++++++++++++++++++++++++++++++++++------ build/vignette.rds |binary inst/CITATION | 2 - inst/doc/reda-Recur.html | 6 +-- inst/doc/reda-intro.html | 32 +++++++++++++------- inst/doc/reda-simulate.html | 6 +-- inst/tinytest/test_mcfDiff.R | 5 +-- inst/tinytest/test_rateReg.R | 14 ++++----- 13 files changed, 131 insertions(+), 67 deletions(-)
Title: CAnopy IMage ANalysis
Description: Tools for preprocessing and processing canopy photographs with
support for raw data reading. Provides methods to address variability in
sky brightness and to mitigate errors from image acquisition in
non-diffuse light. Works with all types of fish-eye lenses, and some
methods also apply to conventional lenses.
Author: Gaston Mauro Diaz [aut, cre]
Maintainer: Gaston Mauro Diaz <gastonmaurodiaz@gmail.com>
Diff between rcaiman versions 1.2.2 dated 2023-11-14 and 2.0.1 dated 2025-09-02
rcaiman-1.2.2/rcaiman/R/apply_thr.R |only rcaiman-1.2.2/rcaiman/R/calc_co.R |only rcaiman-1.2.2/rcaiman/R/cie_sky_model_raster.R |only rcaiman-1.2.2/rcaiman/R/colorfulness.R |only rcaiman-1.2.2/rcaiman/R/enhance_caim.R |only rcaiman-1.2.2/rcaiman/R/extract_rl.R |only rcaiman-1.2.2/rcaiman/R/extract_sky_points_simple.R |only rcaiman-1.2.2/rcaiman/R/extract_sun_coord.R |only rcaiman-1.2.2/rcaiman/R/find_sky_pixels.R |only rcaiman-1.2.2/rcaiman/R/find_sky_pixels_nonnull.R |only rcaiman-1.2.2/rcaiman/R/fit_cie_sky_model.R |only rcaiman-1.2.2/rcaiman/R/fix_reconstructed_sky.R |only rcaiman-1.2.2/rcaiman/R/gbc.R |only rcaiman-1.2.2/rcaiman/R/interpolate_sky_points.R |only rcaiman-1.2.2/rcaiman/R/label_cfa.R |only rcaiman-1.2.2/rcaiman/R/local_fuzzy_thresholding.R |only rcaiman-1.2.2/rcaiman/R/mask_hs.R |only rcaiman-1.2.2/rcaiman/R/mask_sunlit_canopy.R |only rcaiman-1.2.2/rcaiman/R/masking.R |only rcaiman-1.2.2/rcaiman/R/membership_to_color.R |only rcaiman-1.2.2/rcaiman/R/normalize.R |only rcaiman-1.2.2/rcaiman/R/obia.R |only rcaiman-1.2.2/rcaiman/R/ootb_mblt.R |only rcaiman-1.2.2/rcaiman/R/ootb_obia.R |only rcaiman-1.2.2/rcaiman/R/ootb_sky_reconstruction.R |only rcaiman-1.2.2/rcaiman/R/optim_normalize.R |only rcaiman-1.2.2/rcaiman/R/percentage_of_clipped_highlights.R |only rcaiman-1.2.2/rcaiman/R/qtree.R |only rcaiman-1.2.2/rcaiman/R/read_bin.R |only rcaiman-1.2.2/rcaiman/R/read_manual_input.R |only rcaiman-1.2.2/rcaiman/R/read_opt_sky_coef.R |only rcaiman-1.2.2/rcaiman/R/regional_thresholding.R |only rcaiman-1.2.2/rcaiman/R/rings_segmentation.R |only rcaiman-1.2.2/rcaiman/R/row_col_from_zenith_azimuth.R |only rcaiman-1.2.2/rcaiman/R/sectors_segmentation.R |only rcaiman-1.2.2/rcaiman/R/write_sky_points.R |only rcaiman-1.2.2/rcaiman/R/write_sun_coord.R |only rcaiman-1.2.2/rcaiman/inst/REFERENCES.bib.sav |only rcaiman-1.2.2/rcaiman/inst/external/15_CIE_standard_skies.csv |only rcaiman-1.2.2/rcaiman/inst/external/APC_0020.jpg |only rcaiman-1.2.2/rcaiman/inst/external/APC_0581.jpg |only rcaiman-1.2.2/rcaiman/man/apply_thr.Rd |only rcaiman-1.2.2/rcaiman/man/calc_co.Rd |only rcaiman-1.2.2/rcaiman/man/cie_sky_model_raster.Rd |only rcaiman-1.2.2/rcaiman/man/colorfulness.Rd |only rcaiman-1.2.2/rcaiman/man/enhance_caim.Rd |only rcaiman-1.2.2/rcaiman/man/extract_rl.Rd |only rcaiman-1.2.2/rcaiman/man/extract_sky_points_simple.Rd |only rcaiman-1.2.2/rcaiman/man/extract_sun_coord.Rd |only rcaiman-1.2.2/rcaiman/man/find_sky_pixels.Rd |only rcaiman-1.2.2/rcaiman/man/find_sky_pixels_nonnull.Rd |only rcaiman-1.2.2/rcaiman/man/fit_cie_sky_model.Rd |only rcaiman-1.2.2/rcaiman/man/fix_reconstructed_sky.Rd |only rcaiman-1.2.2/rcaiman/man/gbc.Rd |only rcaiman-1.2.2/rcaiman/man/interpolate_sky_points.Rd |only rcaiman-1.2.2/rcaiman/man/local_fuzzy_thresholding.Rd |only rcaiman-1.2.2/rcaiman/man/mask_hs.Rd |only rcaiman-1.2.2/rcaiman/man/mask_sunlit_canopy.Rd |only rcaiman-1.2.2/rcaiman/man/masking.Rd |only rcaiman-1.2.2/rcaiman/man/membership_to_color.Rd |only rcaiman-1.2.2/rcaiman/man/normalize.Rd |only rcaiman-1.2.2/rcaiman/man/obia.Rd |only rcaiman-1.2.2/rcaiman/man/ootb_mblt.Rd |only rcaiman-1.2.2/rcaiman/man/ootb_obia.Rd |only rcaiman-1.2.2/rcaiman/man/ootb_sky_reconstruction.Rd |only rcaiman-1.2.2/rcaiman/man/optim_normalize.Rd |only rcaiman-1.2.2/rcaiman/man/percentage_of_clipped_highlights.Rd |only rcaiman-1.2.2/rcaiman/man/qtree.Rd |only rcaiman-1.2.2/rcaiman/man/read_manual_input.Rd |only rcaiman-1.2.2/rcaiman/man/read_opt_sky_coef.Rd |only rcaiman-1.2.2/rcaiman/man/regional_thresholding.Rd |only rcaiman-1.2.2/rcaiman/man/rings_segmentation.Rd |only rcaiman-1.2.2/rcaiman/man/row_col_from_zenith_azimuth.Rd |only rcaiman-1.2.2/rcaiman/man/sectors_segmentation.Rd |only rcaiman-1.2.2/rcaiman/man/write_bin.Rd |only rcaiman-1.2.2/rcaiman/man/write_sky_points.Rd |only rcaiman-1.2.2/rcaiman/man/write_sun_coord.Rd |only rcaiman-1.2.2/rcaiman/tests/testthat/test-normalize.R |only rcaiman-2.0.1/rcaiman/DESCRIPTION | 35 rcaiman-2.0.1/rcaiman/MD5 | 307 ++++---- rcaiman-2.0.1/rcaiman/NAMESPACE | 174 ++-- rcaiman-2.0.1/rcaiman/NEWS.md | 97 +- rcaiman-2.0.1/rcaiman/R/apply_by_direction.R |only rcaiman-2.0.1/rcaiman/R/azimuth_image.R | 64 - rcaiman-2.0.1/rcaiman/R/binarize_by_region.R |only rcaiman-2.0.1/rcaiman/R/binarize_with_thr.R |only rcaiman-2.0.1/rcaiman/R/calc_diameter.R | 85 +- rcaiman-2.0.1/rcaiman/R/calc_relative_radius.R | 38 - rcaiman-2.0.1/rcaiman/R/calc_spherical_distance.R |only rcaiman-2.0.1/rcaiman/R/calc_zenith_colrow.R | 79 +- rcaiman-2.0.1/rcaiman/R/calibrate_lens.R | 102 +- rcaiman-2.0.1/rcaiman/R/chessboard.R | 26 rcaiman-2.0.1/rcaiman/R/cie_image.R |only rcaiman-2.0.1/rcaiman/R/complementary_gradients.R |only rcaiman-2.0.1/rcaiman/R/compute_canopy_openness.R |only rcaiman-2.0.1/rcaiman/R/conventional_lens_image.R |only rcaiman-2.0.1/rcaiman/R/correct_vignetting.R | 63 + rcaiman-2.0.1/rcaiman/R/crop_caim.R | 40 - rcaiman-2.0.1/rcaiman/R/crosscalibrate_lens.R | 94 +- rcaiman-2.0.1/rcaiman/R/data.R |only rcaiman-2.0.1/rcaiman/R/defuzzify.R | 75 +- rcaiman-2.0.1/rcaiman/R/display_caim.R |only rcaiman-2.0.1/rcaiman/R/estimate_sun_angles.R |only rcaiman-2.0.1/rcaiman/R/expand_noncircular.R | 121 +-- rcaiman-2.0.1/rcaiman/R/extract_dn.R | 114 +-- rcaiman-2.0.1/rcaiman/R/extract_feature.R | 70 - rcaiman-2.0.1/rcaiman/R/extract_radiometry.R | 189 +++-- rcaiman-2.0.1/rcaiman/R/extract_rr.R |only rcaiman-2.0.1/rcaiman/R/extract_sky_points.R | 214 ++--- rcaiman-2.0.1/rcaiman/R/fisheye_to_equidistant.R | 190 ++--- rcaiman-2.0.1/rcaiman/R/fisheye_to_pano.R | 37 rcaiman-2.0.1/rcaiman/R/fit_cie_model.R |only rcaiman-2.0.1/rcaiman/R/fit_coneshaped_model.R | 115 +-- rcaiman-2.0.1/rcaiman/R/fit_trend_surface.R | 192 ++--- rcaiman-2.0.1/rcaiman/R/grow_black.R |only rcaiman-2.0.1/rcaiman/R/hsp_compat.R |only rcaiman-2.0.1/rcaiman/R/interpolate_planar.R |only rcaiman-2.0.1/rcaiman/R/interpolate_spherical.R |only rcaiman-2.0.1/rcaiman/R/invert_gamma_correction.R |only rcaiman-2.0.1/rcaiman/R/lens.R | 129 ++- rcaiman-2.0.1/rcaiman/R/normalize_minmax.R |only rcaiman-2.0.1/rcaiman/R/ootb_bin.R |only rcaiman-2.0.1/rcaiman/R/ootb_sky_above.R |only rcaiman-2.0.1/rcaiman/R/ootb_sky_cie.R |only rcaiman-2.0.1/rcaiman/R/optim_dist_to_black.R |only rcaiman-2.0.1/rcaiman/R/optim_sun_angles.R |only rcaiman-2.0.1/rcaiman/R/paint_with_mask.R |only rcaiman-2.0.1/rcaiman/R/polar_qtree.R | 135 ++- rcaiman-2.0.1/rcaiman/R/rcaiman-package.R | 6 rcaiman-2.0.1/rcaiman/R/read_caim.R | 130 +-- rcaiman-2.0.1/rcaiman/R/read_caim_raw.R | 165 ++-- rcaiman-2.0.1/rcaiman/R/rem_isolated_black_pixels.R |only rcaiman-2.0.1/rcaiman/R/rem_nearby_points.R |only rcaiman-2.0.1/rcaiman/R/rem_outliers.R |only rcaiman-2.0.1/rcaiman/R/ring_segmentation.R |only rcaiman-2.0.1/rcaiman/R/sector_segmentation.R |only rcaiman-2.0.1/rcaiman/R/select_sky_region.R |only rcaiman-2.0.1/rcaiman/R/sky_grid_centers.R |only rcaiman-2.0.1/rcaiman/R/sky_grid_segmentation.R | 120 +-- rcaiman-2.0.1/rcaiman/R/test_lens_coef.R | 32 rcaiman-2.0.1/rcaiman/R/thr_isodata.R | 46 - rcaiman-2.0.1/rcaiman/R/thr_mblt.R | 162 +--- rcaiman-2.0.1/rcaiman/R/thr_twocorner.R |only rcaiman-2.0.1/rcaiman/R/utils.R | 25 rcaiman-2.0.1/rcaiman/R/utils_for_ckecking.R | 373 ++++++++-- rcaiman-2.0.1/rcaiman/R/validate_cie_model.R |only rcaiman-2.0.1/rcaiman/R/write_bin.R | 58 + rcaiman-2.0.1/rcaiman/R/write_caim.R | 34 rcaiman-2.0.1/rcaiman/R/write_sky_cie.R |only rcaiman-2.0.1/rcaiman/R/zenith_azimuth_from_row_col.R | 164 +++- rcaiman-2.0.1/rcaiman/R/zenith_image.R | 38 - rcaiman-2.0.1/rcaiman/build/partial.rdb |binary rcaiman-2.0.1/rcaiman/data |only rcaiman-2.0.1/rcaiman/inst/REFERENCES.bib | 180 ++++ rcaiman-2.0.1/rcaiman/inst/external/APC_0836.jpg |only rcaiman-2.0.1/rcaiman/inst/external/example.tif |binary rcaiman-2.0.1/rcaiman/inst/external/example.txt |only rcaiman-2.0.1/rcaiman/inst/external/example_rr.csv |only rcaiman-2.0.1/rcaiman/inst/external/example_rr_up.csv |only rcaiman-2.0.1/rcaiman/inst/external/example_sky_points.gpkg |only rcaiman-2.0.1/rcaiman/inst/external/example_sun_disk.gpkg |only rcaiman-2.0.1/rcaiman/inst/external/example_val.csv |only rcaiman-2.0.1/rcaiman/inst/external/points_over_perimeter.csv | 21 rcaiman-2.0.1/rcaiman/inst/external/sky_points.csv | 81 +- rcaiman-2.0.1/rcaiman/man/apply_by_direction.Rd |only rcaiman-2.0.1/rcaiman/man/azimuth_image.Rd | 57 - rcaiman-2.0.1/rcaiman/man/binarize_by_region.Rd |only rcaiman-2.0.1/rcaiman/man/binarize_with_thr.Rd |only rcaiman-2.0.1/rcaiman/man/calc_diameter.Rd | 143 +-- rcaiman-2.0.1/rcaiman/man/calc_relative_radius.Rd | 62 - rcaiman-2.0.1/rcaiman/man/calc_spherical_distance.Rd |only rcaiman-2.0.1/rcaiman/man/calc_zenith_colrow.Rd | 143 +-- rcaiman-2.0.1/rcaiman/man/calibrate_lens.Rd | 101 +- rcaiman-2.0.1/rcaiman/man/chessboard.Rd | 32 rcaiman-2.0.1/rcaiman/man/cie_image.Rd |only rcaiman-2.0.1/rcaiman/man/cie_table.Rd |only rcaiman-2.0.1/rcaiman/man/complementary_gradients.Rd |only rcaiman-2.0.1/rcaiman/man/compute_canopy_openness.Rd |only rcaiman-2.0.1/rcaiman/man/conventional_lens_image.Rd |only rcaiman-2.0.1/rcaiman/man/correct_vignetting.Rd | 74 - rcaiman-2.0.1/rcaiman/man/crop_caim.Rd | 28 rcaiman-2.0.1/rcaiman/man/crosscalibrate_lens.Rd | 81 -- rcaiman-2.0.1/rcaiman/man/defuzzify.Rd | 130 +-- rcaiman-2.0.1/rcaiman/man/display_caim.Rd |only rcaiman-2.0.1/rcaiman/man/estimate_sun_angles.Rd |only rcaiman-2.0.1/rcaiman/man/expand_noncircular.Rd | 89 -- rcaiman-2.0.1/rcaiman/man/extract_dn.Rd | 83 -- rcaiman-2.0.1/rcaiman/man/extract_feature.Rd | 68 - rcaiman-2.0.1/rcaiman/man/extract_radiometry.Rd | 341 ++++----- rcaiman-2.0.1/rcaiman/man/extract_rr.Rd |only rcaiman-2.0.1/rcaiman/man/extract_sky_points.Rd | 97 -- rcaiman-2.0.1/rcaiman/man/figures/twocorner_method.png |only rcaiman-2.0.1/rcaiman/man/fisheye_to_equidistant.Rd | 110 +- rcaiman-2.0.1/rcaiman/man/fisheye_to_pano.Rd | 53 - rcaiman-2.0.1/rcaiman/man/fit_cie_model.Rd |only rcaiman-2.0.1/rcaiman/man/fit_coneshaped_model.Rd | 95 +- rcaiman-2.0.1/rcaiman/man/fit_trend_surface.Rd | 100 +- rcaiman-2.0.1/rcaiman/man/grow_black.Rd |only rcaiman-2.0.1/rcaiman/man/hsp_compat.Rd |only rcaiman-2.0.1/rcaiman/man/interpolate_planar.Rd |only rcaiman-2.0.1/rcaiman/man/interpolate_spherical.Rd |only rcaiman-2.0.1/rcaiman/man/invert_gamma_correction.Rd |only rcaiman-2.0.1/rcaiman/man/lens.Rd | 91 +- rcaiman-2.0.1/rcaiman/man/normalize_minmax.Rd |only rcaiman-2.0.1/rcaiman/man/ootb_bin.Rd |only rcaiman-2.0.1/rcaiman/man/ootb_sky_above.Rd |only rcaiman-2.0.1/rcaiman/man/ootb_sky_cie.Rd |only rcaiman-2.0.1/rcaiman/man/optim_dist_to_black.Rd |only rcaiman-2.0.1/rcaiman/man/optim_sun_angles.Rd |only rcaiman-2.0.1/rcaiman/man/paint_with_mask.Rd |only rcaiman-2.0.1/rcaiman/man/polar_qtree.Rd | 82 +- rcaiman-2.0.1/rcaiman/man/rcaiman-package.Rd | 2 rcaiman-2.0.1/rcaiman/man/read_bin.Rd | 54 - rcaiman-2.0.1/rcaiman/man/read_caim.Rd | 119 +-- rcaiman-2.0.1/rcaiman/man/read_caim_raw.Rd | 129 +-- rcaiman-2.0.1/rcaiman/man/rem_isolated_black_pixels.Rd |only rcaiman-2.0.1/rcaiman/man/rem_nearby_points.Rd |only rcaiman-2.0.1/rcaiman/man/rem_outliers.Rd |only rcaiman-2.0.1/rcaiman/man/ring_segmentation.Rd |only rcaiman-2.0.1/rcaiman/man/sector_segmentation.Rd |only rcaiman-2.0.1/rcaiman/man/select_sky_region.Rd |only rcaiman-2.0.1/rcaiman/man/sky_grid_centers.Rd |only rcaiman-2.0.1/rcaiman/man/sky_grid_segmentation.Rd | 86 +- rcaiman-2.0.1/rcaiman/man/test_lens_coef.Rd | 43 - rcaiman-2.0.1/rcaiman/man/thr_isodata.Rd | 33 rcaiman-2.0.1/rcaiman/man/thr_mblt.Rd | 146 --- rcaiman-2.0.1/rcaiman/man/thr_twocorner.Rd |only rcaiman-2.0.1/rcaiman/man/validate_cie_model.Rd |only rcaiman-2.0.1/rcaiman/man/write_caim.Rd | 50 - rcaiman-2.0.1/rcaiman/man/write_sky_cie.Rd |only rcaiman-2.0.1/rcaiman/man/zenith_azimuth_from_row_col.Rd | 65 + rcaiman-2.0.1/rcaiman/man/zenith_image.Rd | 37 rcaiman-2.0.1/rcaiman/tests/testthat/test-normalize_minmax.R |only rcaiman-2.0.1/rcaiman/tools |only 234 files changed, 3785 insertions(+), 3459 deletions(-)
Title: Datasets and Functions to Accompany Analisis De Datos Con R
Description: Datasets and functions to accompany the book 'Analisis de datos con el programa
estadistico R: una introduccion aplicada' by Salas-Eljatib (2021, ISBN: 9789566086109).
The package helps carry out data management, exploratory analyses, and model fitting.
Author: Christian Salas-Eljatib [aut, cre] ,
Campos Nicolas [ctb] ,
Pino Nicolas [ctb] ,
Riquelme Joaquin [ctb]
Maintainer: Christian Salas-Eljatib <cseljatib@gmail.com>
Diff between datana versions 1.1.2 dated 2025-08-18 and 1.1.3 dated 2025-09-02
DESCRIPTION | 6 ++-- MD5 | 16 +++++------ R/descstat.r | 45 ++++++++++++++++++++------------ R/histbxp.r | 70 +++++++++++++++++++++++++------------------------- R/tabtexdescstat.r | 38 +++++++++++++++------------ inst/CITATION | 4 +- man/descstat.Rd | 27 ++++++++++++------- man/histbxp.Rd | 18 +++++++++++- man/tabtexdescstat.Rd | 15 ++++++---- 9 files changed, 142 insertions(+), 97 deletions(-)
Title: PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
Description: Perform parallel factor analysis (PARAFAC: Hitchcock, 1927)
<doi:10.1002/sapm192761164> on fluorescence excitation-emission
matrices: handle scattering signal and inner filter effect, scale
the dataset, fit the model; perform split-half validation or
jack-knifing. Modified approaches such as Whittaker interpolation,
randomised split-half, and fluorescence and scattering model
estimation are also available. The package has a low dependency
footprint and has been tested on a wide range of R versions.
Author: Ivan Krylov [aut, cre] ,
Timur Labutin [ths] ,
Anastasia Drozdova [rev]
Maintainer: Ivan Krylov <ikrylov@laser.chem.msu.ru>
Diff between albatross versions 0.3-8 dated 2024-05-07 and 0.3-9 dated 2025-09-02
DESCRIPTION | 20 ++++++++++------ MD5 | 34 ++++++++++++++-------------- NAMESPACE | 4 +-- R/Rd.R | 12 +++++----- R/corcondia.R | 5 ++-- R/parafac.R | 46 +++++++++++++++++++++++++++++++++++++-- R/splithalf.R | 2 - build/albatross.pdf |binary build/partial.rdb |binary build/stage23.rdb |binary inst/NEWS.Rd | 21 +++++++++++++++++ man/feemparafac.Rd | 35 ++++++++++++++++++++++++++++- man/figures/feemindex.pdf |binary man/figures/scatter-widths.pdf |binary man/figures/whittaker2points.pdf |binary man/macros/albatross.Rd | 10 ++++---- tests/parafac.R | 46 +++++++++++++++++++++++++++++++++++++++ tests/splithalf.R | 7 +++++ 18 files changed, 199 insertions(+), 43 deletions(-)
Title: Projection Visualization Plots for Dimensionally Reduced Data
Description: Creates visualization plots for 2D projected data including ellipse plots, Voronoi diagram plots, and combined ellipse-Voronoi plots. Designed to visualize class separation in dimensionally reduced data from techniques like principal component analysis (PCA), partial least squares discriminant analysis (PLS-DA) or others. For more details see Lotsch and Ultsch (2024) <doi:10.1016/j.imu.2024.101573>.
Author: Jorn Lotsch [aut, cre]
Maintainer: Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>
Diff between VoronoiBiomedPlot versions 0.1.1 dated 2025-06-19 and 0.2 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 3 ++- R/create_projection_plots.R | 4 ++-- build/partial.rdb |binary 5 files changed, 12 insertions(+), 11 deletions(-)
More information about VoronoiBiomedPlot at CRAN
Permanent link
Title: Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text
Shaping
Description: Provides access to the text shaping functionality in the
'HarfBuzz' library and the bidirectional algorithm in the 'Fribidi'
library. 'textshaping' is a low-level utility package mainly for
graphic devices that expands upon the font tool-set provided by the
'systemfonts' package.
Author: Thomas Lin Pedersen [cre, aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between textshaping versions 1.0.2 dated 2025-09-01 and 1.0.3 dated 2025-09-02
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ src/string_shape.h | 3 +-- 4 files changed, 11 insertions(+), 8 deletions(-)
Title: Clinical Stroke Research
Description: A collection of tools for clinical trial data management and
analysis in research and teaching.
The package is mainly collected for personal use, but any use beyond that is encouraged.
This package has migrated functions from 'agdamsbo/daDoctoR', and new functions has been added.
Version follows months and year. See NEWS/Changelog for release notes.
This package includes sampled data from the TALOS trial (Kraglund et al (2018) <doi:10.1161/STROKEAHA.117.020067>).
The win_prob() function is based on work by Zou et al (2022) <doi:10.1161/STROKEAHA.121.037744>.
The age_calc() function is based on work by Becker (2020) <doi:10.18637/jss.v093.i02>.
Author: Andreas Gammelgaard Damsbo [aut, cre]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between stRoke versions 24.10.1 dated 2024-10-25 and 25.9.1 dated 2025-09-02
DESCRIPTION | 12 +-- MD5 | 9 +- NEWS.md | 4 + inst/doc/toolbox.html | 135 +++++++++++++++++++-------------------- tests/spelling.R |only tests/testthat/test-index_plot.R | 31 +++----- 6 files changed, 95 insertions(+), 96 deletions(-)
Title: Create a Package or Research Compendium Structure
Description: Makes easier the creation of R package or research compendium
(i.e. a predefined files/folders structure) so that users can focus on the
code/analysis instead of wasting time organizing files. A full
ready-to-work structure is set up with some additional features: version
control, remote repository creation, CI/CD configuration (check package
integrity under several OS, test code with 'testthat', and build and deploy
website using 'pkgdown'). This package heavily relies on the R packages
'devtools' and 'usethis' and follows recommendations made by Wickham H.
(2015) <ISBN:9781491910597> and Marwick B. et al. (2018)
<doi:10.7287/peerj.preprints.3192v2>.
Author: Nicolas Casajus [aut, cre, cph]
Maintainer: Nicolas Casajus <nicolas.casajus@fondationbiodiversite.fr>
Diff between rcompendium versions 1.3 dated 2023-10-26 and 1.4 dated 2025-09-02
rcompendium-1.3/rcompendium/man/figures/hexsticker.png |only rcompendium-1.4/rcompendium/DESCRIPTION | 14 - rcompendium-1.4/rcompendium/MD5 | 83 +++--- rcompendium-1.4/rcompendium/NAMESPACE | 1 rcompendium-1.4/rcompendium/NEWS.md | 21 + rcompendium-1.4/rcompendium/R/add_compendium.R | 13 - rcompendium-1.4/rcompendium/R/add_dependencies.R | 18 - rcompendium-1.4/rcompendium/R/add_github_actions_citation.R | 126 +++++----- rcompendium-1.4/rcompendium/R/add_github_actions_codemeta.R |only rcompendium-1.4/rcompendium/R/add_renv.R | 2 rcompendium-1.4/rcompendium/R/get_all_functions.R | 3 rcompendium-1.4/rcompendium/R/new_compendium.R | 51 ++-- rcompendium-1.4/rcompendium/R/new_package.R | 46 ++- rcompendium-1.4/rcompendium/R/utils-deps.R | 81 +++--- rcompendium-1.4/rcompendium/R/utils-io.R | 23 + rcompendium-1.4/rcompendium/R/utils-sys.R | 10 rcompendium-1.4/rcompendium/README.md | 12 rcompendium-1.4/rcompendium/build/vignette.rds |binary rcompendium-1.4/rcompendium/inst/CITATION | 4 rcompendium-1.4/rcompendium/inst/doc/rcompendium.R | 84 +++--- rcompendium-1.4/rcompendium/inst/doc/rcompendium.html | 3 rcompendium-1.4/rcompendium/inst/templates/R-CMD-check.yaml | 3 rcompendium-1.4/rcompendium/inst/templates/README-comp.Rmd | 29 +- rcompendium-1.4/rcompendium/inst/templates/document-package.yaml | 2 rcompendium-1.4/rcompendium/inst/templates/pkgdown.yaml | 2 rcompendium-1.4/rcompendium/inst/templates/render-README.yaml | 2 rcompendium-1.4/rcompendium/inst/templates/test-coverage.yaml | 4 rcompendium-1.4/rcompendium/inst/templates/update-citation-cff.yaml | 2 rcompendium-1.4/rcompendium/inst/templates/update-codemeta.yaml |only rcompendium-1.4/rcompendium/man/add_compendium.Rd | 8 rcompendium-1.4/rcompendium/man/add_dependencies.Rd | 1 rcompendium-1.4/rcompendium/man/add_github_actions_check.Rd | 1 rcompendium-1.4/rcompendium/man/add_github_actions_citation.Rd | 4 rcompendium-1.4/rcompendium/man/add_github_actions_codecov.Rd | 1 rcompendium-1.4/rcompendium/man/add_github_actions_codemeta.Rd |only rcompendium-1.4/rcompendium/man/add_github_actions_document.Rd | 1 rcompendium-1.4/rcompendium/man/add_github_actions_pkgdown.Rd | 1 rcompendium-1.4/rcompendium/man/add_github_actions_render.Rd | 1 rcompendium-1.4/rcompendium/man/add_r_depend.Rd | 1 rcompendium-1.4/rcompendium/man/add_to_buildignore.Rd | 1 rcompendium-1.4/rcompendium/man/add_to_gitignore.Rd | 1 rcompendium-1.4/rcompendium/man/figures/logo.png |only rcompendium-1.4/rcompendium/man/new_compendium.Rd | 7 rcompendium-1.4/rcompendium/man/new_package.Rd | 7 rcompendium-1.4/rcompendium/man/rcompendium-package.Rd | 1 45 files changed, 413 insertions(+), 262 deletions(-)
Title: Process and Visualise Concept Mapping Data
Description: Concept maps are versatile tools used across disciplines to enhance understanding,
teaching, brainstorming, and information organization. This package provides functions for
processing and visualizing concept mapping data, involving the sequential use of cluster analysis
(for sorting participants and statements), multidimensional scaling (for positioning statements
in a conceptual space), and visualization techniques, including point cluster maps and
dendrograms. The methodology and its validity are discussed in Kampen, J.K., Hageman, J.A.,
Breuer, M., & Tobi, H. (2025). "The validity of concept mapping: let's call a spade a spade."
Qual Quant. <doi:10.1007/s11135-025-02351-z>.
Author: Jos Hageman [aut, cre],
Jarl Kampen [aut]
Maintainer: Jos Hageman <jos.hageman@wur.nl>
Diff between cmAnalysis versions 1.0.0 dated 2025-03-13 and 1.0.1 dated 2025-09-02
DESCRIPTION | 15 +++++++++++---- MD5 | 7 ++++--- NEWS.md |only R/conceptMapping.R | 6 +++--- man/conceptMapping.Rd | 6 +++--- 5 files changed, 21 insertions(+), 13 deletions(-)
Title: Brazilian Population Estimatives
Description: Functions to handle and aggregate population estimates for Brazilian municipalities by sex and age groups.
Author: Raphael Saldanha [aut, cre]
Maintainer: Raphael Saldanha <raphael.saldanha@fiocruz.br>
Diff between brpop versions 0.6.0 dated 2025-02-24 and 0.6.2 dated 2025-09-02
DESCRIPTION | 9 +++++---- MD5 | 31 ++++++++++++++++--------------- NEWS.md | 6 ++++++ R/datasus2024_mun_female_pop.R | 18 +++++++++++++++--- R/datasus2024_mun_male_pop.R | 16 ++++++++++++++-- R/datasus_mun_female_pop.R | 18 +++++++++++++++--- R/datasus_mun_male_pop.R | 16 ++++++++++++++-- R/error_messages.R |only R/ibge_pop.R | 17 +++++++++++++---- R/mun_pop_age.R | 29 ++++++++++++++++++++++------- R/regsaude_pop_age.R | 29 +++++++++++++++++++++++++---- R/uf_pop_age.R | 27 +++++++++++++++++++++------ R/ufrn_mun_female_pop.R | 16 ++++++++++++++-- R/ufrn_mun_male_pop.R | 16 ++++++++++++++-- man/mun_pop_age.Rd | 4 +++- man/regsaude_pop_age.Rd | 4 +++- man/uf_pop_age.Rd | 4 +++- 17 files changed, 203 insertions(+), 57 deletions(-)
Title: TH's Data Archive
Description: Contains data sets used in other packages Torsten Hothorn
maintains.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between TH.data versions 1.1-3 dated 2025-01-17 and 1.1-4 dated 2025-09-02
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- build/partial.rdb |binary build/vignette.rds |binary data/geyser.rda |binary data/mammoexp.rda |binary inst/doc/blood_loss_report.pdf |binary inst/rda/Primary_endpoint_data.rda |binary 8 files changed, 12 insertions(+), 12 deletions(-)
Title: Authentication Helpers for 'Snowflake'
Description: Authentication helpers for 'Snowflake'.
It provides compatibility with authentication approaches supported
by the 'Snowflake Connector for Python' <https://pypi.org/project/snowflake-connector-python>
and the 'Snowflake CLI' <https://pypi.org/project/snowflake-cli>.
Author: Aaron Jacobs [aut],
E. David Aja [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: E. David Aja <david@posit.co>
Diff between snowflakeauth versions 0.1.2 dated 2025-06-19 and 0.2.0 dated 2025-09-02
snowflakeauth-0.1.2/snowflakeauth/tests/testthat/test_rsa_key1.p8 |only snowflakeauth-0.2.0/snowflakeauth/DESCRIPTION | 10 snowflakeauth-0.2.0/snowflakeauth/MD5 | 30 - snowflakeauth-0.2.0/snowflakeauth/NAMESPACE | 1 snowflakeauth-0.2.0/snowflakeauth/NEWS.md | 7 snowflakeauth-0.2.0/snowflakeauth/R/config.R | 129 +++++ snowflakeauth-0.2.0/snowflakeauth/R/credentials.R | 5 snowflakeauth-0.2.0/snowflakeauth/R/keypair.R | 19 snowflakeauth-0.2.0/snowflakeauth/R/snowflakeauth-package.R | 1 snowflakeauth-0.2.0/snowflakeauth/README.md | 4 snowflakeauth-0.2.0/snowflakeauth/man/snowflake_connection.Rd | 6 snowflakeauth-0.2.0/snowflakeauth/tests/testthat/_snaps/config.md | 12 snowflakeauth-0.2.0/snowflakeauth/tests/testthat/_snaps/keypair.md | 32 - snowflakeauth-0.2.0/snowflakeauth/tests/testthat/encrypted_rsa_key.p8 |only snowflakeauth-0.2.0/snowflakeauth/tests/testthat/test-config-verbose.R |only snowflakeauth-0.2.0/snowflakeauth/tests/testthat/test-config.R | 217 ++++++---- snowflakeauth-0.2.0/snowflakeauth/tests/testthat/test-keypair.R | 41 + snowflakeauth-0.2.0/snowflakeauth/tests/testthat/unencrypted_rsa_key.p8 |only 18 files changed, 382 insertions(+), 132 deletions(-)
Title: A Statistical Framework for the Analysis of Japanese Kanji
Characters
Description: Various tools and data sets that support the study of kanji, including their morphology, decomposition and concepts of distance and similarity between them.
Author: Dominic Schuhmacher [aut, cre] ,
Lennart Finke [aut]
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>
Diff between kanjistat versions 0.14.1 dated 2024-06-04 and 0.14.2 dated 2025-09-02
kanjistat-0.14.1/kanjistat/tests/testthat/Rplots.pdf |only kanjistat-0.14.2/kanjistat/DESCRIPTION | 16 - kanjistat-0.14.2/kanjistat/MD5 | 19 - kanjistat-0.14.2/kanjistat/NEWS.md | 6 kanjistat-0.14.2/kanjistat/R/kanjivec.R | 2 kanjistat-0.14.2/kanjistat/README.md | 4 kanjistat-0.14.2/kanjistat/build/partial.rdb |binary kanjistat-0.14.2/kanjistat/build/vignette.rds |binary kanjistat-0.14.2/kanjistat/inst/doc/kanjistat.R | 204 +++++++++---------- kanjistat-0.14.2/kanjistat/inst/doc/kanjistat.html | 135 ------------ kanjistat-0.14.2/kanjistat/man/kanjivec.Rd | 2 11 files changed, 135 insertions(+), 253 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [aut, ctb] ,
Etienne Bacher [aut, ctb] ,
Ale [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between insight versions 1.4.1 dated 2025-08-29 and 1.4.2 dated 2025-09-02
DESCRIPTION | 6 MD5 | 16 - NEWS.md | 6 R/get_predicted.R | 14 + inst/doc/display.R | 3 inst/doc/display.Rmd | 6 inst/doc/display.html | 491 +++++++++++++++++++++++++++--------------- tests/testthat/test-betareg.R | 1 vignettes/display.Rmd | 6 9 files changed, 362 insertions(+), 187 deletions(-)
Title: Fast Calculation of the Likelihood of a Stochastic Survival
Model
Description: Given exposure and survival time series as well as parameter values, GUTS allows for the fast calculation of the survival probabilities as well as the logarithm of the corresponding likelihood (see Albert, C., Vogel, S. and Ashauer, R. (2016) <doi:10.1371/journal.pcbi.1004978>).
Author: Carlo Albert [aut],
Soeren Vogel [aut],
Oliver Jakoby [aut, cre],
Alexander Singer [aut],
Dirk Nickisch [aut]
Maintainer: Oliver Jakoby <oliver.jakoby@rifcon.de>
Diff between GUTS versions 1.2.5 dated 2023-10-20 and 1.2.6 dated 2025-09-02
DESCRIPTION | 40 ++ MD5 | 18 - build/partial.rdb |binary build/vignette.rds |binary data/diazinon.rda |binary inst/doc/GUTS-proper.R | 96 +++--- inst/doc/GUTS-proper.html | 493 +++++++++++++++++------------------ inst/doc/ringTest.R | 106 +++---- inst/doc/ringTest.html | 637 ++++++++++++++++++++++------------------------ man/GUTS-package.Rd | 56 ++-- 10 files changed, 734 insertions(+), 712 deletions(-)
Title: Automated Data Preparation
Description: Do most of the painful data preparation for a data science project with a minimum amount of code; Take advantages of 'data.table' efficiency and use some algorithmic trick in order to perform data preparation in a time and RAM efficient way.
Author: Emmanuel-Lin Toulemonde [aut, cre]
Maintainer: Emmanuel-Lin Toulemonde <el.toulemonde@protonmail.com>
Diff between dataPreparation versions 1.1.1 dated 2023-07-04 and 1.1.2 dated 2025-09-02
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- NEWS | 8 ++++++++ NEWS.md | 8 ++++++++ R/aggregate.R | 2 +- R/fast_functions.r | 4 ++-- R/generate_from_date.R | 6 +++--- R/generate_from_factor.R | 2 +- R/set_col_as.R | 8 ++++---- man/aggregate_by_key.Rd | 2 +- man/build_date_factor.Rd | 4 ++-- man/build_target_encoding.Rd | 2 +- man/fast_handle_na.Rd | 4 ++-- man/generate_date_diffs.Rd | 2 +- man/set_col_as_character.Rd | 2 +- man/set_col_as_date.Rd | 2 +- man/set_col_as_factor.Rd | 2 +- man/set_col_as_numeric.Rd | 2 +- 18 files changed, 59 insertions(+), 43 deletions(-)
More information about dataPreparation at CRAN
Permanent link
Title: Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It implements the comprehensive workflow for science mapping analysis proposed in Aria M. and
Cuccurullo C. (2017) <doi:10.1016/j.joi.2017.08.007>.
'bibliometrix' provides various routines for importing bibliographic data from 'SCOPUS',
'Clarivate Analytics Web of Science' (<https://www.webofknowledge.com/>), 'Digital Science Dimensions'
(<https://www.dimensions.ai/>), 'OpenAlex' (<https://openalex.org/>), 'Cochrane Library' (<https://www.cochranelibrary.com/>), 'Lens' (<https://lens.org>),
and 'PubMed' (<https://pubmed.ncbi.nlm.nih.gov/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut, cph] ,
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 5.1.0 dated 2025-07-15 and 5.1.1 dated 2025-09-02
DESCRIPTION | 6 MD5 | 16 NEWS | 7 build/partial.rdb |binary inst/biblioshiny/helpContent.R | 3 inst/biblioshiny/libraries.R | 176 --- inst/biblioshiny/server.R | 70 + inst/biblioshiny/ui.R | 16 inst/biblioshiny/utils.R | 2367 +++++++++++++++++++++++++++++++---------- 9 files changed, 1985 insertions(+), 676 deletions(-)
Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework
<https://taf.ices.dk> to organize data, methods, and results used in ICES
assessments. ICES is an organization facilitating international collaboration
in marine science.
Author: Colin Millar [aut, cre]
Maintainer: Colin Millar <colin.millar@ices.dk>
Diff between icesTAF versions 4.2.0 dated 2023-03-21 and 4.3.0 dated 2025-09-02
icesTAF-4.2.0/icesTAF/R/TAF.R |only icesTAF-4.2.0/icesTAF/R/add.data.script.R |only icesTAF-4.2.0/icesTAF/R/datach.all.packages.R |only icesTAF-4.2.0/icesTAF/R/dir.tree.R |only icesTAF-4.2.0/icesTAF/R/download.analysis.R |only icesTAF-4.2.0/icesTAF/R/draft.data.script.R |only icesTAF-4.2.0/icesTAF/R/install.deps.R |only icesTAF-4.2.0/icesTAF/R/is.installed.R |only icesTAF-4.2.0/icesTAF/R/loadpkg.R |only icesTAF-4.2.0/icesTAF/R/run.analysis.R |only icesTAF-4.2.0/icesTAF/R/taf.colors.R |only icesTAF-4.2.0/icesTAF/R/taf.roxygenise.R |only icesTAF-4.2.0/icesTAF/data |only icesTAF-4.2.0/icesTAF/man/add.data.script.Rd |only icesTAF-4.2.0/icesTAF/man/dir.tree.Rd |only icesTAF-4.2.0/icesTAF/man/download.analysis.Rd |only icesTAF-4.2.0/icesTAF/man/draft.data.script.Rd |only icesTAF-4.2.0/icesTAF/man/install.deps.Rd |only icesTAF-4.2.0/icesTAF/man/run.analysis.Rd |only icesTAF-4.2.0/icesTAF/man/taf-reexports.Rd |only icesTAF-4.2.0/icesTAF/man/taf.colors.Rd |only icesTAF-4.2.0/icesTAF/man/taf.roxygenise.Rd |only icesTAF-4.3.0/icesTAF/DESCRIPTION | 28 icesTAF-4.3.0/icesTAF/MD5 | 59 - icesTAF-4.3.0/icesTAF/NAMESPACE | 229 ---- icesTAF-4.3.0/icesTAF/NEWS.md | 1079 +++++++++++------------ icesTAF-4.3.0/icesTAF/R/artifact.R |only icesTAF-4.3.0/icesTAF/R/check.artifact.R |only icesTAF-4.3.0/icesTAF/R/check.artifact.SAG.R |only icesTAF-4.3.0/icesTAF/R/check.artifact.adhoc.R |only icesTAF-4.3.0/icesTAF/R/get.artifacts.R |only icesTAF-4.3.0/icesTAF/R/icesTAF-internal.R | 28 icesTAF-4.3.0/icesTAF/R/icesTAF-package.R | 54 - icesTAF-4.3.0/icesTAF/R/read.artifacts.R |only icesTAF-4.3.0/icesTAF/R/taf.skeleton.sa.org.R | 184 +-- icesTAF-4.3.0/icesTAF/R/taf_api.R |only icesTAF-4.3.0/icesTAF/R/taf_get.R |only icesTAF-4.3.0/icesTAF/R/taf_post.R |only icesTAF-4.3.0/icesTAF/R/write.artifact.R |only icesTAF-4.3.0/icesTAF/inst |only icesTAF-4.3.0/icesTAF/man/artifact.Rd |only icesTAF-4.3.0/icesTAF/man/check.artifact.Rd |only icesTAF-4.3.0/icesTAF/man/get.artifacts.Rd |only icesTAF-4.3.0/icesTAF/man/icesTAF-internal.Rd | 45 icesTAF-4.3.0/icesTAF/man/icesTAF-package.Rd | 63 - icesTAF-4.3.0/icesTAF/man/read.artifacts.Rd |only icesTAF-4.3.0/icesTAF/man/taf.skeleton.sa.org.Rd | 68 - icesTAF-4.3.0/icesTAF/man/taf_api.Rd |only icesTAF-4.3.0/icesTAF/man/taf_get.Rd |only icesTAF-4.3.0/icesTAF/man/taf_post.Rd |only icesTAF-4.3.0/icesTAF/man/write.artifacts.Rd |only 51 files changed, 829 insertions(+), 1008 deletions(-)
Title: 'Copernicus Data Space Ecosystem' API Wrapper
Description: Provides interface to the 'Copernicus Data Space Ecosystem' API
<https://dataspace.copernicus.eu/analyse/apis>, mainly for searching the catalog of available
data from Copernicus Sentinel missions and obtaining the images for just the area of interest
based on selected spectral bands. The package uses the 'Sentinel Hub' REST API interface
<https://dataspace.copernicus.eu/analyse/apis/sentinel-hub> that provides access to various
satellite imagery archives. It allows you to access raw satellite data, rendered images,
statistical analysis, and other features.
This package is in no way officially related to or endorsed by Copernicus.
Author: Zivan Karaman [aut, cre, cph]
Maintainer: Zivan Karaman <zivan.karaman@gmail.com>
Diff between CDSE versions 0.2.1 dated 2024-08-31 and 0.3.0 dated 2025-09-02
CDSE-0.2.1/CDSE/README.md |only CDSE-0.3.0/CDSE/DESCRIPTION | 11 - CDSE-0.3.0/CDSE/MD5 | 32 ++-- CDSE-0.3.0/CDSE/NAMESPACE | 3 CDSE-0.3.0/CDSE/NEWS.md | 8 + CDSE-0.3.0/CDSE/R/GetCollections.R | 2 CDSE-0.3.0/CDSE/R/GetImage.R | 13 + CDSE-0.3.0/CDSE/R/GetStatistics.R | 13 + CDSE-0.3.0/CDSE/R/MakeEvalScript.R |only CDSE-0.3.0/CDSE/R/SearchCatalog.R | 13 + CDSE-0.3.0/CDSE/R/UniqueCatalog.R | 3 CDSE-0.3.0/CDSE/R/internals.R | 9 - CDSE-0.3.0/CDSE/inst/doc/BeforeYouStart.R | 38 ++--- CDSE-0.3.0/CDSE/inst/doc/BeforeYouStart.pdf |binary CDSE-0.3.0/CDSE/inst/doc/CDSE.R | 92 ++++++++++++- CDSE-0.3.0/CDSE/inst/doc/CDSE.Rmd | 167 +++++++++++++++++++++--- CDSE-0.3.0/CDSE/inst/doc/CDSE.pdf |binary CDSE-0.3.0/CDSE/inst/scripts/SCL_CLOUDS_STAT.js |only CDSE-0.3.0/CDSE/man/MakeEvalScript.Rd |only 19 files changed, 335 insertions(+), 69 deletions(-)