Title: A Unified Tidy Interface to R's Machine Learning Ecosystem
Description: Provides a unified tidyverse-compatible interface to R's machine
learning ecosystem - from data ingestion to model publishing. The tl_read()
family reads data from files ('CSV', 'Excel', 'Parquet', 'JSON'), databases
('SQLite', 'PostgreSQL', 'MySQL', 'BigQuery'), and cloud sources ('S3',
'GitHub', 'Kaggle'). The tl_model() function wraps established
implementations from 'glmnet', 'randomForest', 'xgboost', 'e1071', 'rpart',
'gbm', 'nnet', 'cluster', 'dbscan', and others with consistent function
signatures and tidy tibble output. Results flow into unified 'ggplot2'-based
visualization and optional formatted 'gt' tables via the tl_table() family.
The underlying algorithms are unchanged; 'tidylearn' simply makes them
easier to use together. Access raw model objects via the $fit slot for a
supervised method, or $fit$model for an unsupervised one.
Methods include random forests Breiman (2001) <doi:10.1023/A:1010933404324>,
LASSO regression Tibshirani (1996) <doi:10.1111/j.2517-6161 [...truncated...]
Author: Cesaire Tobias [aut, cre]
Maintainer: Cesaire Tobias <cesaire@sheetsolved.com>
Diff between tidylearn versions 0.5.0 dated 2026-09-02 and 0.6.0 dated 2026-10-08
DESCRIPTION | 16 MD5 | 476 +- NAMESPACE | 2 NEWS.md | 5235 ++++++++++++++++++++++-------- R/cloud-cost.R | 78 R/cloud-endpoint.R | 53 R/coefficients.R |only R/compute-advisor.R | 176 - R/compute-detection.R | 81 R/core.R | 621 +++ R/diagnostics.R | 455 +- R/integration.R | 818 +++- R/interactions.R | 910 ++++- R/metrics.R | 1683 ++++++--- R/model-selection.R | 521 ++ R/pipeline.R | 333 + R/preprocessing.R | 396 +- R/read-backends.R | 817 +++- R/read.R | 799 +++- R/supervised-classification.R | 462 +- R/supervised-deep-learning.R | 381 +- R/supervised-neural-networks.R | 897 ++--- R/supervised-regression.R | 367 +- R/supervised-regularization.R | 591 ++- R/supervised-svm.R | 201 - R/supervised-trees.R | 1916 +++++++--- R/supervised-xgboost.R | 971 ++++- R/tables.R | 544 ++- R/tuning.R | 1661 +++++++-- R/unsupervised-clustering.R | 178 - R/unsupervised-dbscan.R | 130 R/unsupervised-distance.R | 404 ++ R/unsupervised-hclust.R | 119 R/unsupervised-market-basket.R | 1319 ++++--- R/unsupervised-mds.R | 119 R/unsupervised-pca.R | 62 R/unsupervised-validation.R | 206 - R/utils.R | 810 ++++ R/visualization.R | 1174 +++++- R/workflows.R | 658 ++- README.md | 28 inst/doc/automl.R | 24 inst/doc/automl.Rmd | 71 inst/doc/automl.html | 141 inst/doc/compute-backends.Rmd | 11 inst/doc/compute-backends.html | 12 inst/doc/data-ingestion.R | 8 inst/doc/data-ingestion.Rmd | 8 inst/doc/data-ingestion.html | 24 inst/doc/diagnostics.R | 20 inst/doc/diagnostics.Rmd | 33 inst/doc/diagnostics.html | 192 - inst/doc/getting-started.R | 4 inst/doc/getting-started.Rmd | 14 inst/doc/getting-started.html | 38 inst/doc/integration-workflows.R | 2 inst/doc/integration-workflows.Rmd | 2 inst/doc/integration-workflows.html | 19 inst/doc/market-basket.R | 24 inst/doc/market-basket.Rmd | 50 inst/doc/market-basket.html | 429 -- inst/doc/reporting.R | 6 inst/doc/reporting.Rmd | 50 inst/doc/reporting.html | 1288 +++++-- inst/doc/supervised-learning.R | 8 inst/doc/supervised-learning.Rmd | 22 inst/doc/supervised-learning.html | 30 inst/doc/tuning-and-pipelines.R | 2 inst/doc/tuning-and-pipelines.Rmd | 17 inst/doc/tuning-and-pipelines.html | 57 inst/doc/unsupervised-learning.R | 8 inst/doc/unsupervised-learning.Rmd | 22 inst/doc/unsupervised-learning.html | 72 inst/examples/unified_workflow.R | 14 inst/security/threat-model.md | 22 man/calc_validation_metrics.Rd | 15 man/compare_clusterings.Rd | 3 man/create_cluster_dashboard.Rd | 11 man/figures/logo.png |binary man/filter_rules_by_item.Rd | 7 man/find_related_items.Rd | 7 man/inspect_rules.Rd | 14 man/optimal_hclust_k.Rd | 5 man/plot_cluster_comparison.Rd | 2 man/plot_clusters.Rd | 6 man/plot_dendrogram.Rd | 4 man/plot_knn_dist.Rd | 2 man/predict.tidylearn_model.Rd | 16 man/predict.tidylearn_stratified.Rd | 14 man/print.tidylearn_data.Rd | 1 man/recommend_products.Rd | 8 man/standardize_data.Rd | 6 man/suggest_eps.Rd | 5 man/summarize_rules.Rd | 3 man/tidy_apriori.Rd | 25 man/tidy_clara.Rd | 11 man/tidy_dbscan.Rd | 19 man/tidy_dist.Rd | 3 man/tidy_gap_stat.Rd | 10 man/tidy_gower.Rd | 4 man/tidy_hclust.Rd | 4 man/tidy_kmeans.Rd | 1 man/tidy_mds.Rd | 4 man/tidy_pam.Rd | 16 man/tidy_pca.Rd | 4 man/tidy_rules.Rd | 10 man/tidy_silhouette.Rd | 5 man/tidylearn-coefficients.Rd |only man/tidylearn-read.Rd | 24 man/tl_anomaly_aware.Rd | 23 man/tl_auto_interactions.Rd | 12 man/tl_auto_ml.Rd | 77 man/tl_calc_classification_metrics.Rd | 66 man/tl_calculate_pr_auc.Rd | 13 man/tl_check_assumptions.Rd | 16 man/tl_check_gpu.Rd | 16 man/tl_cloud_allow_host.Rd | 9 man/tl_coefficients.Rd |only man/tl_compare_cv.Rd | 39 man/tl_compare_pipeline_models.Rd | 4 man/tl_compute_advisor.Rd | 21 man/tl_cv.Rd | 27 man/tl_dashboard.Rd | 8 man/tl_default_param_grid.Rd | 23 man/tl_detect_outliers.Rd | 8 man/tl_diagnostic_dashboard.Rd | 4 man/tl_evaluate.Rd | 26 man/tl_explore.Rd | 13 man/tl_extract_importance.Rd | 3 man/tl_fit_boost.Rd | 14 man/tl_fit_deep.Rd | 11 man/tl_fit_elastic_net.Rd | 6 man/tl_fit_forest.Rd | 3 man/tl_fit_lasso.Rd | 6 man/tl_fit_nn.Rd | 4 man/tl_fit_regularized.Rd | 27 man/tl_fit_ridge.Rd | 6 man/tl_fit_svm.Rd | 5 man/tl_fit_tree.Rd | 4 man/tl_fit_xgboost.Rd | 15 man/tl_get_best_model.Rd | 10 man/tl_get_importance_regularized.Rd | 44 man/tl_interaction_effects.Rd | 31 man/tl_model.Rd | 99 man/tl_pipeline.Rd | 16 man/tl_plot_deep_architecture.Rd | 11 man/tl_plot_importance_comparison.Rd | 20 man/tl_plot_importance_regularized.Rd | 4 man/tl_plot_interaction.Rd | 34 man/tl_plot_model.Rd | 4 man/tl_plot_model_comparison.Rd | 7 man/tl_plot_partial_dependence.Rd | 7 man/tl_plot_svm_boundary.Rd | 10 man/tl_plot_tree.Rd | 2 man/tl_plot_tuning_results.Rd | 9 man/tl_plot_xgboost_importance.Rd | 16 man/tl_plot_xgboost_shap_dependence.Rd | 7 man/tl_plot_xgboost_shap_summary.Rd | 6 man/tl_plot_xgboost_tree.Rd | 9 man/tl_predict_xgboost.Rd | 5 man/tl_prepare_data.Rd | 34 man/tl_read.Rd | 52 man/tl_read_bigquery.Rd | 25 man/tl_read_csv.Rd | 7 man/tl_read_db.Rd | 13 man/tl_read_dir.Rd | 29 man/tl_read_excel.Rd | 11 man/tl_read_github.Rd | 32 man/tl_read_json.Rd | 24 man/tl_read_kaggle.Rd | 32 man/tl_read_mysql.Rd | 28 man/tl_read_parquet.Rd | 10 man/tl_read_postgres.Rd | 31 man/tl_read_rdata.Rd | 22 man/tl_read_rds.Rd | 17 man/tl_read_s3.Rd | 26 man/tl_read_sqlite.Rd | 12 man/tl_read_tsv.Rd | 7 man/tl_read_zip.Rd | 38 man/tl_reduce_dimensions.Rd | 13 man/tl_run_pipeline.Rd | 5 man/tl_semisupervised.Rd | 43 man/tl_split.Rd | 9 man/tl_step_selection.Rd | 13 man/tl_stratified_models.Rd | 27 man/tl_table.Rd | 2 man/tl_table_clusters.Rd | 7 man/tl_table_coefficients.Rd | 31 man/tl_table_comparison.Rd | 12 man/tl_table_confusion.Rd | 6 man/tl_table_importance.Rd | 2 man/tl_table_loadings.Rd | 2 man/tl_table_metrics.Rd | 5 man/tl_table_variance.Rd | 2 man/tl_test_interactions.Rd | 5 man/tl_test_model_difference.Rd | 12 man/tl_transfer_learning.Rd | 15 man/tl_tune_deep.Rd | 28 man/tl_tune_grid.Rd | 154 man/tl_tune_nn.Rd | 18 man/tl_tune_random.Rd | 45 man/tl_tune_xgboost.Rd | 47 man/tl_xgboost_shap.Rd | 20 man/visualize_rules.Rd | 19 tests/testthat/test-cloud-cost.R | 72 tests/testthat/test-cloud-guards.R | 46 tests/testthat/test-coefficients.R |only tests/testthat/test-compute-advisor.R | 146 tests/testthat/test-compute-detection.R | 129 tests/testthat/test-compute-routing.R | 27 tests/testthat/test-core.R | 883 +++++ tests/testthat/test-degenerate-specs.R | 8 tests/testthat/test-diagnostics.R | 220 + tests/testthat/test-examples.R | 68 tests/testthat/test-integration.R | 772 ++++ tests/testthat/test-interactions.R |only tests/testthat/test-leakage-and-guards.R | 14 tests/testthat/test-metrics-correctness.R | 540 ++- tests/testthat/test-metrics.R | 379 ++ tests/testthat/test-pipeline.R | 501 ++ tests/testthat/test-predict-contract.R | 206 + tests/testthat/test-preprocessing.R | 437 ++ tests/testthat/test-read.R | 1332 +++++++ tests/testthat/test-supervised-backends.R |only tests/testthat/test-supervised-predict.R | 2 tests/testthat/test-supervised.R | 925 +++++ tests/testthat/test-tables.R | 390 ++ tests/testthat/test-tuning.R | 1650 +++++++++ tests/testthat/test-unsupervised.R | 1434 ++++++++ tests/testthat/test-visualization.R | 884 +++++ tests/testthat/test-workflows.R | 289 + vignettes/automl.Rmd | 71 vignettes/compute-backends.Rmd | 11 vignettes/data-ingestion.Rmd | 8 vignettes/diagnostics.Rmd | 33 vignettes/getting-started.Rmd | 14 vignettes/integration-workflows.Rmd | 2 vignettes/market-basket.Rmd | 50 vignettes/reporting.Rmd | 50 vignettes/supervised-learning.Rmd | 22 vignettes/tuning-and-pipelines.Rmd | 17 vignettes/unsupervised-learning.Rmd | 22 242 files changed, 34190 insertions(+), 8997 deletions(-)
Title: External Control Borrowing for Rare Disease Trials
Description: Implements causal inference methods for incorporating external
control data into randomized controlled trials (RCTs) with longitudinal
outcomes. Provides an analysis module supporting weighting-based methods
such as inverse probability weighting (IPW) and augmented inverse
probability weighting (AIPW), difference-in-differences (DID), and
synthetic control approaches for borrowing external control information,
as well as a simulation module for generating trial and external control
data, evaluating estimator performance via Monte Carlo studies, and
conducting power analyses for sample size determination. Methods are
based on Zhou et al. (2025) <doi:10.1093/jrsssa/qnae075> and
Zhou et al. (2024) <doi:10.1080/10543406.2024.2330209>.
Author: Lei Shi [aut],
Matt Secrest [cre, aut] ,
Herbert Pang [aut],
Chen Chen [aut],
Jiawen Zhu [aut],
Genentech, Inc. [cph]
Maintainer: Matt Secrest <secrmatt@gmail.com>
Diff between rdborrow versions 0.0.4.2 dated 2026-10-01 and 0.0.5.0 dated 2026-10-08
DESCRIPTION | 15 - MD5 | 152 ++++++------ NAMESPACE | 4 NEWS.md | 42 +++ R/analysis_OLE_class.R | 30 +- R/analysis_class.R | 27 +- R/analysis_primary_class.R | 25 + R/data.R | 41 +++ R/did_ec_aipw.R | 64 ++++- R/did_ec_ipw.R | 43 ++- R/did_ec_or.R | 70 ++++- R/ec_aipw.R | 111 +++++--- R/ec_ipw.R | 56 +++- R/method_class.R | 238 ++++++++++++++++++ R/package.R | 4 R/rdborrow-package.R | 7 R/run_analysis.R | 27 +- R/run_simulation.R | 14 - R/scm.R | 205 +++++++++++----- R/simulate_outcome_from_model.R | 1 R/simulate_trial.R | 2 R/simulation_class.R | 29 +- README.md | 4 data/SyntheticDataII.rda |only inst/WORDLIST | 13 + inst/doc/OLE_analysis_workflow.R | 6 inst/doc/OLE_analysis_workflow.Rmd | 14 + inst/doc/OLE_analysis_workflow.html | 49 ++- inst/doc/OLE_simulation_workflow.html | 4 inst/doc/introduction.Rmd | 16 - inst/doc/introduction.html | 24 + inst/doc/primary_analysis_workflow.R | 2 inst/doc/primary_analysis_workflow.Rmd | 12 inst/doc/primary_analysis_workflow.html | 26 +- inst/doc/primary_simulation_workflow.R | 4 inst/doc/primary_simulation_workflow.Rmd | 8 inst/doc/primary_simulation_workflow.html | 24 - man/SyntheticData.Rd | 22 + man/SyntheticDataII.Rd |only man/aaa-rdborrow-package.Rd | 7 man/did_ec_aipw.Rd | 36 ++ man/did_ec_ipw.Rd | 28 +- man/did_ec_or.Rd | 25 + man/ec_aipw.Rd | 48 ++- man/ec_ipw.Rd | 24 + man/estimate.Rd | 7 man/run_analysis.Rd | 25 + man/run_simulation.Rd | 2 man/scm.Rd | 33 ++ man/setup_analysis_OLE.Rd | 29 +- man/setup_analysis_primary.Rd | 30 +- man/setup_simulation_OLE.Rd | 10 man/setup_simulation_primary.Rd | 7 man/simulation_OLE_obj-class.Rd | 2 man/simulation_primary_obj-class.Rd | 2 tests/testthat/helper-analysis.R |only tests/testthat/helper-independent.R |only tests/testthat/helper-ole.R |only tests/testthat/test-analysis_OLE_class.R | 13 + tests/testthat/test-analysis_class.R | 278 ++++++++++++++++++++++ tests/testthat/test-analysis_primary_class.R | 6 tests/testthat/test-data.R |only tests/testthat/test-did_ec_aipw.R |only tests/testthat/test-did_ec_ipw.R |only tests/testthat/test-did_ec_or.R |only tests/testthat/test-ec_aipw.R |only tests/testthat/test-ec_ipw.R |only tests/testthat/test-full_pipeline_did_ec_aipw.R | 5 tests/testthat/test-full_pipeline_did_ec_ipw.R | 5 tests/testthat/test-full_pipeline_did_ec_or.R | 3 tests/testthat/test-full_pipeline_ec_aipw.R | 8 tests/testthat/test-full_pipeline_ec_ipw.R | 6 tests/testthat/test-full_pipeline_scm.R | 3 tests/testthat/test-method_class.R | 163 ++++++++++++ tests/testthat/test-run_analysis.R | 226 +++++++++++++++++ tests/testthat/test-run_simulation.R | 46 +++ tests/testthat/test-scm.R |only tests/testthat/test-simulate_outcome_from_model.R | 11 tests/testthat/test-simulation_class.R | 71 +++++ vignettes/OLE_analysis_workflow.Rmd | 14 + vignettes/introduction.Rmd | 16 - vignettes/primary_analysis_workflow.Rmd | 12 vignettes/primary_simulation_workflow.Rmd | 8 83 files changed, 2160 insertions(+), 484 deletions(-)
Title: Partial Dependence Plots
Description: A general framework for constructing partial dependence (i.e.,
marginal effect) plots from various types of machine learning models
in R.
Author: Brandon M. Greenwell [aut, cre]
Maintainer: Brandon M. Greenwell <greenwell.brandon@gmail.com>
Diff between pdp versions 0.8.3 dated 2026-01-23 and 0.10.0 dated 2026-10-08
pdp-0.10.0/pdp/DESCRIPTION | 30 +- pdp-0.10.0/pdp/MD5 | 145 +++------- pdp-0.10.0/pdp/NAMESPACE | 29 -- pdp-0.10.0/pdp/NEWS.md | 142 ++++++++++ pdp-0.10.0/pdp/R/data.R | 90 +++--- pdp-0.10.0/pdp/R/exemplar.R | 40 ++ pdp-0.10.0/pdp/R/get_predictions.R | 162 +++--------- pdp-0.10.0/pdp/R/get_task.R | 13 pdp-0.10.0/pdp/R/get_training_data.R | 6 pdp-0.10.0/pdp/R/pardep.R | 209 +++++++-------- pdp-0.10.0/pdp/R/partial.R | 323 ++++++++++++++---------- pdp-0.10.0/pdp/R/pdp-package.R | 22 - pdp-0.10.0/pdp/R/plot.R |only pdp-0.10.0/pdp/R/plotPartial.R | 172 ++++++------ pdp-0.10.0/pdp/R/pred_grid.R | 17 - pdp-0.10.0/pdp/R/utils.R | 31 +- pdp-0.10.0/pdp/README.md | 134 +++++---- pdp-0.10.0/pdp/build/vignette.rds |binary pdp-0.10.0/pdp/data/pima.RData |binary pdp-0.10.0/pdp/inst/doc/faster-pdp.R |only pdp-0.10.0/pdp/inst/doc/faster-pdp.Rmd |only pdp-0.10.0/pdp/inst/doc/faster-pdp.html |only pdp-0.10.0/pdp/inst/doc/ice-curves.R |only pdp-0.10.0/pdp/inst/doc/ice-curves.Rmd |only pdp-0.10.0/pdp/inst/doc/ice-curves.html |only pdp-0.10.0/pdp/inst/doc/pdp.R |only pdp-0.10.0/pdp/inst/doc/pdp.Rmd |only pdp-0.10.0/pdp/inst/doc/pdp.html |only pdp-0.10.0/pdp/inst/tinytest/test_batch_size.R |only pdp-0.10.0/pdp/inst/tinytest/test_issues.R |only pdp-0.10.0/pdp/inst/tinytest/test_pkg_MASS.R | 16 - pdp-0.10.0/pdp/inst/tinytest/test_pkg_gbm.R |only pdp-0.10.0/pdp/inst/tinytest/test_pkg_party.R | 24 - pdp-0.10.0/pdp/inst/tinytest/test_pkg_stats.R | 16 - pdp-0.10.0/pdp/inst/tinytest/test_pkg_xgboost.R | 18 - pdp-0.10.0/pdp/inst/tinytest/test_plot.R |only pdp-0.10.0/pdp/man/boston.Rd | 36 +- pdp-0.10.0/pdp/man/exemplar.Rd | 21 + pdp-0.10.0/pdp/man/partial.Rd | 90 ++++-- pdp-0.10.0/pdp/man/pdp-package.Rd | 21 - pdp-0.10.0/pdp/man/pima.Rd | 51 ++- pdp-0.10.0/pdp/man/plot.partial.Rd |only pdp-0.10.0/pdp/man/plotPartial.Rd | 24 + pdp-0.10.0/pdp/man/trellis.last.object.Rd | 2 pdp-0.10.0/pdp/src/PartialGBM.cpp | 14 - pdp-0.10.0/pdp/vignettes/faster-pdp.Rmd |only pdp-0.10.0/pdp/vignettes/ice-curves.Rmd |only pdp-0.10.0/pdp/vignettes/pdp.Rmd |only pdp-0.8.3/pdp/R/autoplot.R |only pdp-0.8.3/pdp/R/topPredictors.R |only pdp-0.8.3/pdp/inst/doc/pdp-approximate.Rnw |only pdp-0.8.3/pdp/inst/doc/pdp-approximate.pdf |only pdp-0.8.3/pdp/inst/doc/pdp-intro.Rnw |only pdp-0.8.3/pdp/inst/doc/pdp-intro.pdf |only pdp-0.8.3/pdp/inst/doc/pdp-link-function.Rnw |only pdp-0.8.3/pdp/inst/doc/pdp-link-function.pdf |only pdp-0.8.3/pdp/man/autoplot.partial.Rd |only pdp-0.8.3/pdp/man/topPredictors.Rd |only pdp-0.8.3/pdp/vignettes/pdf |only pdp-0.8.3/pdp/vignettes/pdp-approximate.Rnw |only pdp-0.8.3/pdp/vignettes/pdp-intro.Rnw |only pdp-0.8.3/pdp/vignettes/pdp-link-function.Rnw |only pdp-0.8.3/pdp/vignettes/rmd |only 63 files changed, 1035 insertions(+), 863 deletions(-)
Title: Download Crypto Currency Data from 'CoinMarketCap' and
'CoinGecko'
Description: Retrieves crypto currency information and historical prices as well as information on the exchanges they are listed on. Historical data contains daily open, high, low and close values for all crypto currencies. The package draws on two complementary sources: 'CoinMarketCap' <https://coinmarketcap.com> (primary, via the 'crypto_*' functions) and 'CoinGecko' <https://www.coingecko.com> (secondary, via the 'cg_*' functions). Both sources are queried without an 'API' key; the two function families return tibbles with identical column conventions so downstream pipelines work on either source.
Author: Sebastian Stoeckl [aut, cre] ,
Jesse Vent [ctb]
Maintainer: Sebastian Stoeckl <sebastian.stoeckl@uni.li>
Diff between crypto2 versions 2.0.5 dated 2025-09-11 and 3.0.0 dated 2026-10-08
DESCRIPTION | 21 MD5 | 78 + NAMESPACE | 26 NEWS.md | 291 ++++-- R/cg_daily.R |only R/cg_extras.R |only R/cg_history.R |only R/cg_info.R |only R/cg_list.R |only R/cg_listings.R |only R/cg_recover.R |only R/crypto_crosswalk.R |only R/crypto_global_quotes.R | 2 R/crypto_history.R | 65 + R/crypto_info.R | 67 - R/crypto_listings.R | 444 +++++----- R/globals.R | 7 README.md | 231 ++--- build |only inst/CITATION | 6 inst/WORDLIST | 56 + inst/doc |only inst/extdata |only man/cg_history.Rd |only man/cg_history_by_id.Rd |only man/cg_id_mapping.Rd |only man/cg_info.Rd |only man/cg_list.Rd |only man/cg_listings.Rd |only man/crypto_crosswalk.Rd |only man/crypto_listings.Rd | 244 ++--- man/exchange_info.Rd | 118 +- man/safeFromJSON.Rd | 36 tests/testthat/helper-cg.R |only tests/testthat/test-cg-anomalies.R |only tests/testthat/test-cg-daily.R |only tests/testthat/test-cg-endpoints.R |only tests/testthat/test-cg-helpers.R |only tests/testthat/test-cg-listings.R |only tests/testthat/test-cg-mapping.R |only tests/testthat/test-cg-recover.R |only tests/testthat/test-cg-schema.R |only tests/testthat/test-cg-vs-cmc.R |only tests/testthat/test-crosswalk.R |only tests/testthat/test-crypto-info.R | 9 tests/testthat/test-listings.R | 145 ++- tests/testthat/test_data/crypto_history_reference.rds |binary tests/testthat/test_data/d9e71308b8f7d2956f6151a2ebf9423d.json | 2 tests/testthat/test_data/ex_info_reference.rds |binary tests/testthat/test_data/fcce7d762bbee082f65c377f184cd541.json | 2 tools |only vignettes |only 52 files changed, 1126 insertions(+), 724 deletions(-)
Title: Construct and Compare scGRN from Single-Cell Transcriptomic Data
Description: A workflow based on machine learning methods to construct and compare single-cell gene regulatory networks (scGRN) using single-cell RNA-seq (scRNA-seq) data collected from different conditions. Uses principal component regression, tensor decomposition, and manifold alignment, to accurately identify even subtly shifted gene expression programs. See <doi:10.1016/j.patter.2020.100139> for more details.
Author: Daniel Osorio [aut, cre] ,
Yan Zhong [aut, ctb],
Guanxun Li [aut, ctb],
Jianhua Huang [aut, ctb],
James Cai [aut, ctb, ths]
Maintainer: Daniel Osorio <dcosorioh@gmail.com>
Diff between scTenifoldNet versions 1.4 dated 2026-08-04 and 1.4.3 dated 2026-10-08
scTenifoldNet-1.4.3/scTenifoldNet/DESCRIPTION | 13 scTenifoldNet-1.4.3/scTenifoldNet/MD5 | 40 scTenifoldNet-1.4.3/scTenifoldNet/NAMESPACE | 14 scTenifoldNet-1.4.3/scTenifoldNet/R/checkMemory.R |only scTenifoldNet-1.4.3/scTenifoldNet/R/dRegulation.R | 16 scTenifoldNet-1.4.3/scTenifoldNet/R/makeNetworks.R | 4 scTenifoldNet-1.4.3/scTenifoldNet/R/pcNet.R | 774 ++++++---- scTenifoldNet-1.4.3/scTenifoldNet/R/restoreSeed.R |only scTenifoldNet-1.4.3/scTenifoldNet/R/scTenifoldNet.R | 32 scTenifoldNet-1.4.3/scTenifoldNet/R/tensorDecomposition.R | 11 scTenifoldNet-1.4.3/scTenifoldNet/README.md | 50 scTenifoldNet-1.4.3/scTenifoldNet/man/checkMemory.Rd |only scTenifoldNet-1.4.3/scTenifoldNet/man/dRegulation.Rd | 6 scTenifoldNet-1.4.3/scTenifoldNet/man/makeNetworks.Rd | 2 scTenifoldNet-1.4.3/scTenifoldNet/man/pcNet.Rd | 119 - scTenifoldNet-1.4.3/scTenifoldNet/man/scTenifoldNet.Rd | 7 scTenifoldNet-1.4.3/scTenifoldNet/man/tensorDecomposition.Rd | 5 scTenifoldNet-1.4.3/scTenifoldNet/tests/testthat/test-checkMemory.R |only scTenifoldNet-1.4.3/scTenifoldNet/tests/testthat/test-dRegulation.R |only scTenifoldNet-1.4.3/scTenifoldNet/tests/testthat/test-pcNet.R | 38 scTenifoldNet-1.4/scTenifoldNet/R/RcppExports.R |only scTenifoldNet-1.4/scTenifoldNet/man/pcNetCoreRcpp.Rd |only scTenifoldNet-1.4/scTenifoldNet/src |only scTenifoldNet-1.4/scTenifoldNet/tests/testthat/test-pcNetRcpp.R |only 24 files changed, 727 insertions(+), 404 deletions(-)
Title: SQL Parsing, Analysis and Dialect Translation
Description: Parse, tokenize, validate, format, analyze and translate SQL
between more than 30 dialects ('PostgreSQL', 'MySQL', 'BigQuery',
'Snowflake', 'DuckDB', 'T-SQL', and others) using the 'polyglot-sql'
Rust crate <https://github.com/tobilg/polyglot>, a Rust port of the
'SQLGlot' 'Python' library. All processing happens locally in the R
session; no database connection, 'Python' runtime or external service
is required. Includes column-level lineage, structural query
analysis, query optimization, 'AST' diffing and 'OpenLineage' facet
generation.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Julia Nascimento Barreto [aut] ,
Tobias Mueller [cph] ),
Toby Mao [cph] ,
The authors of the vendored Rust dependencies [cph]
Maintainer: Andre Leite <leite@castlab.org>
Diff between polyglotSQL versions 0.1.1 dated 2026-09-27 and 0.1.2 dated 2026-10-08
DESCRIPTION | 21 +++++++---- MD5 | 19 +++++----- NEWS.md | 18 ++++++++++ README.md | 2 + inst/doc/getting-started.html | 2 - man/polyglotSQL-package.Rd | 7 ++- src/Makevars.in | 3 + src/entrypoint.c | 64 ++++++++++++++++++++++++++++++++++++ src/rust/Cargo.toml | 9 +++-- tests/testthat/test-compiled-code.R |only tools/config.R | 48 ++++++++++++++++++++++++++- 11 files changed, 168 insertions(+), 25 deletions(-)
Title: Generalized Latent Markov Models
Description: Latent Markov models for longitudinal continuous and categorical data. See Bartolucci, Pandolfi, Pennoni (2017)<doi:10.18637/jss.v081.i04>.
Author: Francesco Bartolucci [aut, cre],
Silvia Pandolfi [aut],
Fulvia Pennoni [aut],
Luca Brusa [ctb],
Alessio Farcomeni [ctb],
Alessio Serafini [ctb]
Maintainer: Francesco Bartolucci <francesco.bartolucci@unipg.it>
Diff between LMest versions 3.2.8 dated 2026-01-14 and 4.0.0 dated 2026-10-08
DESCRIPTION | 16 +++-- MD5 | 72 ++++++++++++++++--------- NAMESPACE | 24 ++------ R/backward_Multinom.R |only R/comp_PI.R |only R/comp_Piv.R |only R/comp_sc_PI.R |only R/comp_sc_Piv.R |only R/design_matrices.R |only R/est_LM_cat_multinom.R |only R/forward_Multinom.R |only R/mc_multinom.R |only R/print.R | 26 +++++++++ R/summary.LM_cat_multinom.R |only R/summary.mc_multinom.R |only build/vignette.rds |binary inst/doc/vignetteLMest.R | 32 ++++++++++- inst/doc/vignetteLMest.Rmd | 69 ++++++++++++++++++------ inst/doc/vignetteLMest.html | 122 ++++++++++++++++++++++++++++---------------- man/LMbasic-class.Rd | 2 man/LMest-package.Rd | 8 +- man/RLMSlong.Rd | 2 man/bootstrap.Rd | 6 +- man/data_employment_sim.Rd | 2 man/data_heart_sim.Rd | 8 +- man/data_market_sim.Rd | 6 +- man/design_matrices.Rd |only man/draw.Rd | 6 -- man/est_LM_cat_multinom.Rd |only man/est_lm_cov_latent.Rd | 6 +- man/est_lm_cov_manifest.Rd | 3 - man/lmest.Rd | 8 +- man/lmestCont.Rd | 8 +- man/lmestMc.Rd | 10 +-- man/lmestSearch.Rd | 4 - man/mc_multinom.Rd |only man/print.Rd | 9 ++- man/summary.Rd | 6 +- src/LMest_init.c | 38 +++++++++---- src/backward.f |only src/backward_multinom.f |only src/comp_PI.f |only src/comp_Piv.f |only src/comp_sc_PI.f |only src/comp_sc_Piv.f |only src/forward.f |only src/forward_multinom.f |only vignettes/vignetteLMest.Rmd | 69 ++++++++++++++++++------ 48 files changed, 378 insertions(+), 184 deletions(-)
Title: Fast Survival Analysis and Simulation for Clinical Trials
Description: Provides fast alternatives to standard survival analysis functions
in the 'survival' package, together with tools for time-to-event trial
simulation and sequential analysis. The estimation and testing functions
cover a single-time-point Kaplan-Meier estimator (survfit_fast()), log-rank
tests including weighted and stratified variants (survdiff_fast()), a
closed-form hazard ratio estimator based on the Pike-Halley Estimator method
(coxph_fast()), restricted mean survival time (rmst_fast()), window mean
survival time (wmst_fast()), milestone survival comparison
(milestone_fast()), median survival time (medsurv_fast()), the max-combo
test (maxcombo_fast()), the robust modestly-weighted log-rank test
(rmw_fast()), the weighted Kaplan-Meier (Pepe-Fleming) test (wkm_fast()),
the average hazard with survival weight (ahsw_fast()), and the
Kalbfleisch-Prentice average hazard ratio (ahr_fast()). The simulation
layer generates individual patient data (simdata_fast()), determines the
calendar time [...truncated...]
Author: Gosuke Homma [aut, cre]
Maintainer: Gosuke Homma <my.name.is.gosuke@gmail.com>
Diff between FastSurvival versions 1.0.0 dated 2026-09-29 and 1.1.0 dated 2026-10-08
DESCRIPTION | 18 - MD5 | 230 +++++++++++-------- NAMESPACE | 2 NEWS.md | 237 ++++++++++++++++++++ R/FastSurvival-package.R | 17 + R/RcppExports.R | 12 - R/ahr_fast.R | 7 R/ahsw_fast.R | 7 R/analysis_fast.R | 205 +++++++++++++++-- R/check_presorted.R |only R/check_time_event.R | 7 R/coxph_fast.R | 40 +-- R/cutoff_fast.R |only R/kmcurve_fast.R | 4 R/maxcombo_fast.R | 10 R/medsurv_fast.R | 2 R/milestone_fast.R | 17 + R/pairwise_fast.R | 144 +++++------- R/rmst_fast.R | 8 R/rmw_fast.R | 2 R/sim_key.R |only R/simdata_fast.R | 149 +++++++++++- R/simdata_fast_id_sub.R |only R/simsummary_fast.R | 4 R/survdiff_fast.R | 7 R/survfit_fast.R | 10 R/switch_fast.R |only R/wkm_fast.R | 2 R/wmst_fast.R | 2 README.md | 108 ++++++--- build/vignette.rds |binary inst/WORDLIST | 20 + inst/doc/FastSurvival.R | 2 inst/doc/FastSurvival.Rmd | 28 +- inst/doc/FastSurvival.html | 128 +++++------ inst/doc/compare-logrank-rmst.R | 8 inst/doc/compare-logrank-rmst.Rmd | 12 - inst/doc/compare-logrank-rmst.html | 30 +- inst/doc/correlated-pfs-os-gsd.R | 110 +++------ inst/doc/correlated-pfs-os-gsd.Rmd | 173 ++++++-------- inst/doc/correlated-pfs-os-gsd.html | 267 +++++++++++------------ inst/doc/external-data.R |only inst/doc/external-data.Rmd |only inst/doc/external-data.html |only inst/doc/group-sequential-design.R | 199 ++++++++++------- inst/doc/group-sequential-design.Rmd | 233 +++++++++++--------- inst/doc/group-sequential-design.html | 325 ++++++++++++++++------------ inst/doc/investigate-freidlin-and-korn.R | 39 +-- inst/doc/investigate-freidlin-and-korn.Rmd | 61 ++--- inst/doc/investigate-freidlin-and-korn.html | 148 ++++++------ inst/doc/mrct-regional-consistency.R | 3 inst/doc/mrct-regional-consistency.Rmd | 22 - inst/doc/mrct-regional-consistency.html | 157 ++++++------- inst/doc/multi-arm-pairwise.R | 30 +- inst/doc/multi-arm-pairwise.Rmd | 54 +++- inst/doc/multi-arm-pairwise.html | 76 ++++-- inst/doc/speed-comparison.Rmd | 48 +++- inst/doc/speed-comparison.html | 59 ++++- inst/doc/treatment-switching.R |only inst/doc/treatment-switching.Rmd |only inst/doc/treatment-switching.html |only inst/doc/validation.R | 42 +++ inst/doc/validation.Rmd | 135 +++++++++-- inst/doc/validation.html | 187 +++++++++++----- man/FastSurvival-package.Rd | 17 + man/ahr_fast.Rd | 3 man/ahsw_fast.Rd | 8 man/analysis_fast.Rd | 95 ++++++-- man/coxph_fast.Rd | 37 +-- man/cutoff_fast.Rd |only man/maxcombo_fast.Rd | 11 man/medsurv_fast.Rd | 3 man/milestone_fast.Rd | 8 man/pairwise_fast.Rd | 36 ++- man/rmst_fast.Rd | 6 man/rmw_fast.Rd | 3 man/simdata_fast.Rd | 111 ++++++++- man/simsummary_fast.Rd | 4 man/survdiff_fast.Rd | 5 man/survfit_fast.Rd | 10 man/switch_fast.Rd |only man/wkm_fast.Rd | 3 man/wmst_fast.Rd | 3 src/RcppExports.cpp | 58 ++++ src/analysis_loop_core.cpp | 19 + src/cutoff_core.cpp |only src/simdata_core_full.cpp | 29 ++ src/simdata_core_id.cpp | 299 +++++++++++++++++++++++++ src/wkm_core.cpp | 16 + tests/testthat/test-ahr_fast.R | 12 + tests/testthat/test-ahsw_fast.R | 7 tests/testthat/test-analysis_fast.R | 158 +++++++++++++ tests/testthat/test-coxph_fast.R | 9 tests/testthat/test-cutoff_fast.R |only tests/testthat/test-gen_scenario_fast.R |only tests/testthat/test-kmcurve_fast.R | 7 tests/testthat/test-maxcombo_fast.R | 7 tests/testthat/test-medsurv_fast.R | 7 tests/testthat/test-milestone_fast.R | 38 +++ tests/testthat/test-pairwise_fast.R | 71 +++++- tests/testthat/test-plot.scenario_fast.R |only tests/testthat/test-print.ahr_fast.R |only tests/testthat/test-print.ahsw_fast.R |only tests/testthat/test-print.maxcombo_fast.R |only tests/testthat/test-print.medsurv_fast.R |only tests/testthat/test-print.rmst_fast.R |only tests/testthat/test-print.rmw_fast.R |only tests/testthat/test-print.scenario_fast.R |only tests/testthat/test-print.survfit_fast.R |only tests/testthat/test-print.wkm_fast.R |only tests/testthat/test-print.wmst_fast.R |only tests/testthat/test-rmst_fast.R | 8 tests/testthat/test-rmw_fast.R | 7 tests/testthat/test-simdata_fast.R | 91 +++++++ tests/testthat/test-simdata_fast_id.R | 144 ++++++++++++ tests/testthat/test-survdiff_fast.R | 23 + tests/testthat/test-survfit_fast.R | 5 tests/testthat/test-switch_fast.R |only tests/testthat/test-wkm_fast.R | 61 ++++- tests/testthat/test-wmst_fast.R | 7 vignettes/FastSurvival.Rmd | 28 +- vignettes/compare-logrank-rmst.Rmd | 12 - vignettes/correlated-pfs-os-gsd.Rmd | 173 ++++++-------- vignettes/external-data.Rmd |only vignettes/group-sequential-design.Rmd | 233 +++++++++++--------- vignettes/investigate-freidlin-and-korn.Rmd | 61 ++--- vignettes/mrct-regional-consistency.Rmd | 22 - vignettes/multi-arm-pairwise.Rmd | 54 +++- vignettes/speed-comparison.Rmd | 48 +++- vignettes/treatment-switching.Rmd |only vignettes/validation.Rmd | 135 +++++++++-- 131 files changed, 4261 insertions(+), 1798 deletions(-)
Title: Read and Manipulate Video Subtitles
Description: A collection of functions to read, write and manipulate video
subtitles. Supported formats include 'srt', 'subrip', 'sub', 'subviewer',
'microdvd', 'ssa', 'ass', 'substation', 'vtt', and 'webvtt'.
Author: Francois Keck [aut, cre, cph] ,
Bob Rudis [ctb] ,
Alban Sagouis [ctb]
Maintainer: Francois Keck <francois.keck@gmail.com>
Diff between subtools versions 1.1.0 dated 2026-03-24 and 1.1.1 dated 2026-10-08
DESCRIPTION | 8 +-- MD5 | 26 +++++------ NEWS.md | 6 ++ R/read_subtitles.R | 58 +++++++++++++++++++----- R/utils_regexes.R | 42 ++++++++++++++++++ README.md | 77 +++++++++++++++++++++++---------- build/vignette.rds |binary inst/doc/subtools-text-analysis.html | 6 +- man/as_subtitle.Rd | 2 man/read_subtitles.Rd | 12 +++-- tests/testthat/_snaps/unnest_tokens.md | 2 tests/testthat/test_read.R | 16 ++++++ tests/testthat/test_unnest_tokens.R | 2 tests/testthat/test_utils_regex.R | 2 14 files changed, 197 insertions(+), 62 deletions(-)
Title: Tidy Tools for Joinpoint Regression Models
Description: Provides tools to fit joinpoint regression models with a log-linear specification by levels of one or two categorical variable(s) using the grid-search method. It includes functions to estimate the Annual Percent Change (APC) and the Average Annual Percent Change (AAPC), along with their 95% confidence intervals, and to generate formatted summary tables and plots of results.
Author: Tamara Ricardo [aut, cre]
Maintainer: Tamara Ricardo <tamararicardo83@gmail.com>
Diff between joinpointR versions 1.1.0 dated 2026-07-20 and 2.0.0 dated 2026-10-08
joinpointR-1.1.0/joinpointR/R/as_ft_jp.R |only joinpointR-1.1.0/joinpointR/R/get_aapc.R |only joinpointR-1.1.0/joinpointR/R/get_apc.R |only joinpointR-1.1.0/joinpointR/R/model_jp.R |only joinpointR-1.1.0/joinpointR/R/summary_jp.R |only joinpointR-1.1.0/joinpointR/R/utils.R |only joinpointR-1.1.0/joinpointR/inst/doc/introduction.R |only joinpointR-1.1.0/joinpointR/inst/doc/introduction.Rmd |only joinpointR-1.1.0/joinpointR/inst/doc/introduction.html |only joinpointR-1.1.0/joinpointR/man/get_aapc.Rd |only joinpointR-1.1.0/joinpointR/man/get_apc.Rd |only joinpointR-1.1.0/joinpointR/man/jp_to_ft.Rd |only joinpointR-1.1.0/joinpointR/man/summary_jp.Rd |only joinpointR-1.1.0/joinpointR/vignettes/introduction.Rmd |only joinpointR-2.0.0/joinpointR/DESCRIPTION | 27 joinpointR-2.0.0/joinpointR/LICENSE | 4 joinpointR-2.0.0/joinpointR/MD5 | 61 - joinpointR-2.0.0/joinpointR/NAMESPACE | 32 joinpointR-2.0.0/joinpointR/NEWS.md | 46 - joinpointR-2.0.0/joinpointR/R/bic_jp.R |only joinpointR-2.0.0/joinpointR/R/clean_jp_data.R |only joinpointR-2.0.0/joinpointR/R/get_summary.R |only joinpointR-2.0.0/joinpointR/R/gg_jpoint.R | 600 ++++++++++------- joinpointR-2.0.0/joinpointR/R/globals.R | 2 joinpointR-2.0.0/joinpointR/R/hiv_data.R | 22 joinpointR-2.0.0/joinpointR/R/model_jp_grid.R |only joinpointR-2.0.0/joinpointR/R/plot_cbpal.R |only joinpointR-2.0.0/joinpointR/R/scale_cbpal_color.R |only joinpointR-2.0.0/joinpointR/R/sysdata.rda |only joinpointR-2.0.0/joinpointR/README.md | 178 ++--- joinpointR-2.0.0/joinpointR/build/vignette.rds |binary joinpointR-2.0.0/joinpointR/data/hiv_data.rda |binary joinpointR-2.0.0/joinpointR/inst/doc/Introduction.R |only joinpointR-2.0.0/joinpointR/inst/doc/Introduction.Rmd |only joinpointR-2.0.0/joinpointR/inst/doc/Introduction.html |only joinpointR-2.0.0/joinpointR/man/bic_jp.Rd |only joinpointR-2.0.0/joinpointR/man/clean_jp_data.Rd |only joinpointR-2.0.0/joinpointR/man/figures/logo.png |binary joinpointR-2.0.0/joinpointR/man/get_summary.Rd |only joinpointR-2.0.0/joinpointR/man/gg_jpoint.Rd | 193 ++--- joinpointR-2.0.0/joinpointR/man/hiv_data.Rd | 54 - joinpointR-2.0.0/joinpointR/man/model_jp.Rd | 214 +++--- joinpointR-2.0.0/joinpointR/man/plot_cbpal.Rd |only joinpointR-2.0.0/joinpointR/man/scale_cbpal.Rd |only joinpointR-2.0.0/joinpointR/man/summary.model_jp.Rd |only joinpointR-2.0.0/joinpointR/tests |only joinpointR-2.0.0/joinpointR/vignettes/Introduction.Rmd |only 47 files changed, 782 insertions(+), 651 deletions(-)
Title: Amazon Web Services Software Development Kit
Description: Interface to Amazon Web Services <https://aws.amazon.com>,
including storage, database, and compute services, such as 'Simple
Storage Service' ('S3'), 'DynamoDB' 'NoSQL' database, and 'Lambda'
functions-as-a-service.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws versions 0.10.0 dated 2026-06-01 and 0.11.0 dated 2026-10-08
paws-0.10.0/paws/man/panorama.Rd |only paws-0.11.0/paws/DESCRIPTION | 25 paws-0.11.0/paws/MD5 | 565 +- paws-0.11.0/paws/NAMESPACE | 19 paws-0.11.0/paws/R/paws.R | 2315 ++++++++--- paws-0.11.0/paws/man/accessanalyzer.Rd | 4 paws-0.11.0/paws/man/account.Rd | 9 paws-0.11.0/paws/man/acm.Rd | 29 paws-0.11.0/paws/man/acmpca.Rd | 4 paws-0.11.0/paws/man/apigateway.Rd | 4 paws-0.11.0/paws/man/apigatewaymanagementapi.Rd | 4 paws-0.11.0/paws/man/apigatewayv2.Rd | 4 paws-0.11.0/paws/man/appfabric.Rd | 4 paws-0.11.0/paws/man/applicationautoscaling.Rd | 4 paws-0.11.0/paws/man/applicationcostprofiler.Rd | 4 paws-0.11.0/paws/man/applicationinsights.Rd | 4 paws-0.11.0/paws/man/appmesh.Rd | 4 paws-0.11.0/paws/man/appregistry.Rd | 4 paws-0.11.0/paws/man/apprunner.Rd | 4 paws-0.11.0/paws/man/appstream.Rd | 4 paws-0.11.0/paws/man/arczonalshift.Rd | 4 paws-0.11.0/paws/man/athena.Rd | 4 paws-0.11.0/paws/man/auditmanager.Rd | 4 paws-0.11.0/paws/man/augmentedairuntime.Rd | 4 paws-0.11.0/paws/man/autoscaling.Rd | 4 paws-0.11.0/paws/man/autoscalingplans.Rd | 4 paws-0.11.0/paws/man/backup.Rd | 20 paws-0.11.0/paws/man/backupgateway.Rd | 4 paws-0.11.0/paws/man/batch.Rd | 7 paws-0.11.0/paws/man/bedrock.Rd | 16 paws-0.11.0/paws/man/bedrockagent.Rd | 15 paws-0.11.0/paws/man/bedrockagentcore.Rd | 6 paws-0.11.0/paws/man/bedrockagentcorecontrol.Rd | 48 paws-0.11.0/paws/man/bedrockagentruntime.Rd | 14 paws-0.11.0/paws/man/bedrockdataautomation.Rd | 4 paws-0.11.0/paws/man/bedrockdataautomationruntime.Rd | 4 paws-0.11.0/paws/man/bedrockruntime.Rd | 5 paws-0.11.0/paws/man/billing.Rd | 15 paws-0.11.0/paws/man/billingconductor.Rd | 6 paws-0.11.0/paws/man/braket.Rd | 6 paws-0.11.0/paws/man/budgets.Rd | 4 paws-0.11.0/paws/man/chatbot.Rd | 4 paws-0.11.0/paws/man/cleanroomsml.Rd | 4 paws-0.11.0/paws/man/cloud9.Rd | 4 paws-0.11.0/paws/man/cloudcontrolapi.Rd | 4 paws-0.11.0/paws/man/clouddirectory.Rd | 6 paws-0.11.0/paws/man/cloudformation.Rd | 6 paws-0.11.0/paws/man/cloudfront.Rd | 4 paws-0.11.0/paws/man/cloudfrontkeyvaluestore.Rd | 4 paws-0.11.0/paws/man/cloudhsm.Rd | 4 paws-0.11.0/paws/man/cloudhsmv2.Rd | 4 paws-0.11.0/paws/man/cloudsearch.Rd | 4 paws-0.11.0/paws/man/cloudsearchdomain.Rd | 4 paws-0.11.0/paws/man/cloudtrail.Rd | 70 paws-0.11.0/paws/man/cloudtraildataservice.Rd | 4 paws-0.11.0/paws/man/cloudwatch.Rd | 51 paws-0.11.0/paws/man/cloudwatchapplicationsignals.Rd | 13 paws-0.11.0/paws/man/cloudwatchinternetmonitor.Rd | 4 paws-0.11.0/paws/man/cloudwatchlogs.Rd | 19 paws-0.11.0/paws/man/cloudwatchobservabilityaccessmanager.Rd | 4 paws-0.11.0/paws/man/cloudwatchrum.Rd | 4 paws-0.11.0/paws/man/codeartifact.Rd | 4 paws-0.11.0/paws/man/codebuild.Rd | 4 paws-0.11.0/paws/man/codecatalyst.Rd | 4 paws-0.11.0/paws/man/codecommit.Rd | 6 paws-0.11.0/paws/man/codeconnections.Rd | 4 paws-0.11.0/paws/man/codedeploy.Rd | 4 paws-0.11.0/paws/man/codeguruprofiler.Rd | 4 paws-0.11.0/paws/man/codegurureviewer.Rd | 4 paws-0.11.0/paws/man/codegurusecurity.Rd | 4 paws-0.11.0/paws/man/codepipeline.Rd | 4 paws-0.11.0/paws/man/codestarconnections.Rd | 4 paws-0.11.0/paws/man/codestarnotifications.Rd | 4 paws-0.11.0/paws/man/cognitoidentity.Rd | 4 paws-0.11.0/paws/man/cognitoidentityprovider.Rd | 14 paws-0.11.0/paws/man/cognitosync.Rd | 4 paws-0.11.0/paws/man/comprehend.Rd | 4 paws-0.11.0/paws/man/comprehendmedical.Rd | 4 paws-0.11.0/paws/man/computeoptimizer.Rd | 4 paws-0.11.0/paws/man/configservice.Rd | 9 paws-0.11.0/paws/man/connect.Rd | 40 paws-0.11.0/paws/man/connectcampaignservice.Rd | 4 paws-0.11.0/paws/man/connectcampaignservicev2.Rd | 4 paws-0.11.0/paws/man/connectcases.Rd | 4 paws-0.11.0/paws/man/connectcontactlens.Rd | 6 paws-0.11.0/paws/man/connectparticipant.Rd | 8 paws-0.11.0/paws/man/connectwisdomservice.Rd | 4 paws-0.11.0/paws/man/controltower.Rd | 4 paws-0.11.0/paws/man/costandusagereportservice.Rd | 4 paws-0.11.0/paws/man/costexplorer.Rd | 4 paws-0.11.0/paws/man/customerprofiles.Rd | 13 paws-0.11.0/paws/man/datapipeline.Rd | 4 paws-0.11.0/paws/man/datazone.Rd | 6 paws-0.11.0/paws/man/dax.Rd | 4 paws-0.11.0/paws/man/detective.Rd | 4 paws-0.11.0/paws/man/devopsguru.Rd | 4 paws-0.11.0/paws/man/directconnect.Rd | 14 paws-0.11.0/paws/man/directoryservice.Rd | 4 paws-0.11.0/paws/man/dlm.Rd | 4 paws-0.11.0/paws/man/docdb.Rd | 4 paws-0.11.0/paws/man/docdbelastic.Rd | 4 paws-0.11.0/paws/man/drs.Rd | 24 paws-0.11.0/paws/man/dynamodb.Rd | 5 paws-0.11.0/paws/man/dynamodbstreams.Rd | 4 paws-0.11.0/paws/man/ebs.Rd | 4 paws-0.11.0/paws/man/ec2.Rd | 50 paws-0.11.0/paws/man/ec2instanceconnect.Rd | 4 paws-0.11.0/paws/man/ecr.Rd | 4 paws-0.11.0/paws/man/ecrpublic.Rd | 4 paws-0.11.0/paws/man/ecs.Rd | 4 paws-0.11.0/paws/man/efs.Rd | 4 paws-0.11.0/paws/man/eks.Rd | 10 paws-0.11.0/paws/man/elasticache.Rd | 4 paws-0.11.0/paws/man/elasticbeanstalk.Rd | 36 paws-0.11.0/paws/man/elasticsearchservice.Rd | 4 paws-0.11.0/paws/man/elb.Rd | 6 paws-0.11.0/paws/man/elbv2.Rd | 6 paws-0.11.0/paws/man/emr.Rd | 9 paws-0.11.0/paws/man/emrcontainers.Rd | 8 paws-0.11.0/paws/man/emrserverless.Rd | 4 paws-0.11.0/paws/man/entityresolution.Rd | 4 paws-0.11.0/paws/man/eventbridge.Rd | 4 paws-0.11.0/paws/man/eventbridgepipes.Rd | 4 paws-0.11.0/paws/man/eventbridgescheduler.Rd | 4 paws-0.11.0/paws/man/finspace.Rd | 4 paws-0.11.0/paws/man/finspacedata.Rd | 4 paws-0.11.0/paws/man/firehose.Rd | 4 paws-0.11.0/paws/man/fis.Rd | 4 paws-0.11.0/paws/man/fms.Rd | 4 paws-0.11.0/paws/man/forecastqueryservice.Rd | 4 paws-0.11.0/paws/man/forecastservice.Rd | 4 paws-0.11.0/paws/man/frauddetector.Rd | 4 paws-0.11.0/paws/man/fsx.Rd | 4 paws-0.11.0/paws/man/glacier.Rd | 4 paws-0.11.0/paws/man/globalaccelerator.Rd | 4 paws-0.11.0/paws/man/glue.Rd | 45 paws-0.11.0/paws/man/gluedatabrew.Rd | 4 paws-0.11.0/paws/man/guardduty.Rd | 19 paws-0.11.0/paws/man/health.Rd | 5 paws-0.11.0/paws/man/healthlake.Rd | 23 paws-0.11.0/paws/man/iam.Rd | 8 paws-0.11.0/paws/man/iamrolesanywhere.Rd | 4 paws-0.11.0/paws/man/identitystore.Rd | 17 paws-0.11.0/paws/man/imagebuilder.Rd | 86 paws-0.11.0/paws/man/inspector.Rd | 6 paws-0.11.0/paws/man/inspector2.Rd | 14 paws-0.11.0/paws/man/ivs.Rd | 7 paws-0.11.0/paws/man/ivschat.Rd | 6 paws-0.11.0/paws/man/ivsrealtime.Rd | 4 paws-0.11.0/paws/man/kafka.Rd | 9 paws-0.11.0/paws/man/kafkaconnect.Rd | 5 paws-0.11.0/paws/man/kendra.Rd | 4 paws-0.11.0/paws/man/kendraranking.Rd | 4 paws-0.11.0/paws/man/keyspaces.Rd | 4 paws-0.11.0/paws/man/kinesis.Rd | 10 paws-0.11.0/paws/man/kinesisanalytics.Rd | 4 paws-0.11.0/paws/man/kinesisanalyticsv2.Rd | 4 paws-0.11.0/paws/man/kms.Rd | 4 paws-0.11.0/paws/man/lakeformation.Rd | 4 paws-0.11.0/paws/man/lambda.Rd | 7 paws-0.11.0/paws/man/lexmodelbuildingservice.Rd | 4 paws-0.11.0/paws/man/lexmodelsv2.Rd | 33 paws-0.11.0/paws/man/lexruntimeservice.Rd | 4 paws-0.11.0/paws/man/lexruntimev2.Rd | 4 paws-0.11.0/paws/man/licensemanager.Rd | 4 paws-0.11.0/paws/man/licensemanagerlinuxsubscriptions.Rd | 4 paws-0.11.0/paws/man/licensemanagerusersubscriptions.Rd | 4 paws-0.11.0/paws/man/lightsail.Rd | 5 paws-0.11.0/paws/man/locationservice.Rd | 4 paws-0.11.0/paws/man/lookoutequipment.Rd | 4 paws-0.11.0/paws/man/machinelearning.Rd | 4 paws-0.11.0/paws/man/macie2.Rd | 4 paws-0.11.0/paws/man/managedgrafana.Rd | 4 paws-0.11.0/paws/man/marketplacecatalog.Rd | 6 paws-0.11.0/paws/man/marketplacecommerceanalytics.Rd | 4 paws-0.11.0/paws/man/marketplaceentitlementservice.Rd | 4 paws-0.11.0/paws/man/marketplacemetering.Rd | 8 paws-0.11.0/paws/man/memorydb.Rd | 4 paws-0.11.0/paws/man/mq.Rd | 5 paws-0.11.0/paws/man/mturk.Rd | 4 paws-0.11.0/paws/man/mwaa.Rd | 4 paws-0.11.0/paws/man/neptune.Rd | 4 paws-0.11.0/paws/man/neptunedata.Rd | 4 paws-0.11.0/paws/man/networkfirewall.Rd | 12 paws-0.11.0/paws/man/networkmanager.Rd | 4 paws-0.11.0/paws/man/omics.Rd | 4 paws-0.11.0/paws/man/opensearchingestion.Rd | 4 paws-0.11.0/paws/man/opensearchservice.Rd | 12 paws-0.11.0/paws/man/opensearchserviceserverless.Rd | 4 paws-0.11.0/paws/man/organizations.Rd | 30 paws-0.11.0/paws/man/paymentcryptographycontrolplane.Rd | 4 paws-0.11.0/paws/man/paymentcryptographydataplane.Rd | 6 paws-0.11.0/paws/man/pcaconnectorad.Rd | 4 paws-0.11.0/paws/man/personalize.Rd | 4 paws-0.11.0/paws/man/personalizeevents.Rd | 4 paws-0.11.0/paws/man/personalizeruntime.Rd | 4 paws-0.11.0/paws/man/pi.Rd | 4 paws-0.11.0/paws/man/pinpoint.Rd | 4 paws-0.11.0/paws/man/pinpointemail.Rd | 4 paws-0.11.0/paws/man/pinpointsmsvoice.Rd | 4 paws-0.11.0/paws/man/pinpointsmsvoicev2.Rd | 8 paws-0.11.0/paws/man/polly.Rd | 4 paws-0.11.0/paws/man/pricing.Rd | 4 paws-0.11.0/paws/man/prometheusservice.Rd | 6 paws-0.11.0/paws/man/proton.Rd | 4 paws-0.11.0/paws/man/quicksight.Rd | 71 paws-0.11.0/paws/man/ram.Rd | 4 paws-0.11.0/paws/man/rds.Rd | 4 paws-0.11.0/paws/man/rdsdataservice.Rd | 8 paws-0.11.0/paws/man/recyclebin.Rd | 4 paws-0.11.0/paws/man/redshift.Rd | 8 paws-0.11.0/paws/man/redshiftdataapiservice.Rd | 5 paws-0.11.0/paws/man/redshiftserverless.Rd | 4 paws-0.11.0/paws/man/rekognition.Rd | 45 paws-0.11.0/paws/man/resiliencehub.Rd | 4 paws-0.11.0/paws/man/resourceexplorer.Rd | 4 paws-0.11.0/paws/man/resourcegroups.Rd | 4 paws-0.11.0/paws/man/resourcegroupstaggingapi.Rd | 4 paws-0.11.0/paws/man/route53.Rd | 4 paws-0.11.0/paws/man/route53domains.Rd | 4 paws-0.11.0/paws/man/route53profiles.Rd | 4 paws-0.11.0/paws/man/route53recoverycluster.Rd | 4 paws-0.11.0/paws/man/route53recoverycontrolconfig.Rd | 4 paws-0.11.0/paws/man/route53recoveryreadiness.Rd | 4 paws-0.11.0/paws/man/route53resolver.Rd | 10 paws-0.11.0/paws/man/s3.Rd | 26 paws-0.11.0/paws/man/s3control.Rd | 4 paws-0.11.0/paws/man/s3outposts.Rd | 4 paws-0.11.0/paws/man/s3tables.Rd | 4 paws-0.11.0/paws/man/sagemaker.Rd | 12 paws-0.11.0/paws/man/sagemakeredgemanager.Rd | 4 paws-0.11.0/paws/man/sagemakerfeaturestoreruntime.Rd | 9 paws-0.11.0/paws/man/sagemakergeospatialcapabilities.Rd | 4 paws-0.11.0/paws/man/sagemakermetrics.Rd | 4 paws-0.11.0/paws/man/sagemakerruntime.Rd | 4 paws-0.11.0/paws/man/savingsplans.Rd | 4 paws-0.11.0/paws/man/schemas.Rd | 4 paws-0.11.0/paws/man/secretsmanager.Rd | 4 paws-0.11.0/paws/man/securityhub.Rd | 14 paws-0.11.0/paws/man/securitylake.Rd | 4 paws-0.11.0/paws/man/serverlessapplicationrepository.Rd | 4 paws-0.11.0/paws/man/servicecatalog.Rd | 4 paws-0.11.0/paws/man/servicediscovery.Rd | 4 paws-0.11.0/paws/man/servicequotas.Rd | 4 paws-0.11.0/paws/man/ses.Rd | 4 paws-0.11.0/paws/man/sesv2.Rd | 24 paws-0.11.0/paws/man/sfn.Rd | 4 paws-0.11.0/paws/man/shield.Rd | 4 paws-0.11.0/paws/man/simpledb.Rd | 4 paws-0.11.0/paws/man/sns.Rd | 8 paws-0.11.0/paws/man/sqs.Rd | 4 paws-0.11.0/paws/man/ssm.Rd | 12 paws-0.11.0/paws/man/ssmcontacts.Rd | 4 paws-0.11.0/paws/man/ssmincidents.Rd | 4 paws-0.11.0/paws/man/ssmsap.Rd | 4 paws-0.11.0/paws/man/sso.Rd | 4 paws-0.11.0/paws/man/ssoadmin.Rd | 4 paws-0.11.0/paws/man/ssooidc.Rd | 6 paws-0.11.0/paws/man/storagegateway.Rd | 4 paws-0.11.0/paws/man/sts.Rd | 12 paws-0.11.0/paws/man/support.Rd | 14 paws-0.11.0/paws/man/supportapp.Rd | 4 paws-0.11.0/paws/man/swf.Rd | 4 paws-0.11.0/paws/man/synthetics.Rd | 4 paws-0.11.0/paws/man/telconetworkbuilder.Rd | 4 paws-0.11.0/paws/man/textract.Rd | 4 paws-0.11.0/paws/man/timestreamquery.Rd | 4 paws-0.11.0/paws/man/timestreamwrite.Rd | 4 paws-0.11.0/paws/man/transcribeservice.Rd | 5 paws-0.11.0/paws/man/translate.Rd | 4 paws-0.11.0/paws/man/verifiedpermissions.Rd | 4 paws-0.11.0/paws/man/voiceid.Rd | 4 paws-0.11.0/paws/man/vpclattice.Rd | 4 paws-0.11.0/paws/man/waf.Rd | 4 paws-0.11.0/paws/man/wafregional.Rd | 4 paws-0.11.0/paws/man/wafv2.Rd | 8 paws-0.11.0/paws/man/wellarchitected.Rd | 35 paws-0.11.0/paws/man/workdocs.Rd | 4 paws-0.11.0/paws/man/workmail.Rd | 4 paws-0.11.0/paws/man/workmailmessageflow.Rd | 4 paws-0.11.0/paws/man/workspaces.Rd | 28 paws-0.11.0/paws/man/workspacesweb.Rd | 4 paws-0.11.0/paws/man/xray.Rd | 4 paws-0.11.0/paws/tests |only 284 files changed, 3676 insertions(+), 1417 deletions(-)
Title: Optimizing Acoustic Signal Detection
Description: Facilitates the automatic detection of acoustic signals,
providing functions to diagnose and optimize the performance of detection
routines. Detections from other software can also be explored and optimized.
This package has been peer-reviewed by rOpenSci.
Araya-Salas et al. (2022) <doi:10.1101/2022.12.13.520253>.
Author: Marcelo Araya-Salas [aut, cre] ,
Alec L. Robitaille [rev] ,
Sam Lapp [rev]
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
Diff between ohun versions 1.0.4 dated 2025-10-22 and 1.0.5 dated 2026-10-08
DESCRIPTION | 13 + MD5 | 121 ++++++++--------- NAMESPACE | 3 NEWS.md | 15 ++ R/consensus_detection.R | 21 +-- R/diagnose_detection.R | 30 ++-- R/energy_detector.R | 28 ++-- R/get_envelopes.R | 17 +- R/get_templates.R | 11 - R/internal_functions.R | 169 ++++++++++++++++-------- R/label_detection.R | 29 ++-- R/label_spectro.R | 63 ++++----- R/merge_overlaps.R | 9 - R/ohun-package.R | 7 - R/optimize_energy_detector.R | 34 ++--- R/optimize_template_detector.R | 10 - R/plot_detection.R | 16 +- R/reassemble_detection.R | 23 ++- R/split_acoustic_data.R | 34 ++--- R/summarize_acoustic_data.R | 9 - R/summarize_diagnostic.R | 17 +- R/summarize_reference.R | 8 - R/template_correlator.R | 20 +- R/template_detector.R | 95 ++++++++++--- README.md | 88 +++++++++++- build/vignette.rds |binary data/lbh1.rda |binary data/lbh2.rda |binary data/lbh_reference.rda |binary inst/doc/energy_based_detection.R | 32 +++- inst/doc/energy_based_detection.Rmd | 69 +++++----- inst/doc/energy_based_detection.html | 224 +++++++++++++++++---------------- inst/doc/intro_to_ohun.R | 13 - inst/doc/intro_to_ohun.Rmd | 59 ++++---- inst/doc/intro_to_ohun.html | 188 +++++++++++++++------------ inst/doc/template_based_detection.R | 8 - inst/doc/template_based_detection.Rmd | 43 +++--- inst/doc/template_based_detection.html | 216 ++++++++++++++++--------------- man/consensus_detection.Rd | 20 +- man/diagnose_detection.Rd | 16 +- man/energy_detector.Rd | 16 +- man/envelopes.Rd |only man/get_envelopes.Rd | 7 - man/get_templates.Rd | 7 - man/label_detection.Rd | 6 man/label_spectro.Rd | 16 +- man/merge_overlaps.Rd | 6 man/ohun.Rd | 4 man/optimize_energy_detector.Rd | 12 - man/optimize_template_detector.Rd | 6 man/plot_detection.Rd | 14 +- man/print.envelopes.Rd | 9 - man/reassemble_detection.Rd | 6 man/split_acoustic_data.Rd | 10 - man/summarize_acoustic_data.Rd | 2 man/summarize_diagnostic.Rd | 9 - man/summarize_reference.Rd | 8 - man/template_correlator.Rd | 12 - man/template_detector.Rd | 13 + vignettes/energy_based_detection.Rmd | 69 +++++----- vignettes/intro_to_ohun.Rmd | 59 ++++---- vignettes/template_based_detection.Rmd | 43 +++--- 62 files changed, 1185 insertions(+), 927 deletions(-)
Title: Unidimensional Item Response Theory Modeling
Description: Fit unidimensional item response theory (IRT) models to test
data, which includes both dichotomous and polytomous items, calibrate
pretest item parameters, estimate examinees' abilities, and examine
the IRT model-data fit on item-level in different ways as well as provide
useful functions related to IRT analyses such as differential item
functioning analysis.
In addition, the package provides a set of classical test theory functions
for computing item- and test-level statistics (e.g., item difficulty, item-total
correlation, and coefficient alpha) and for scoring and analyzing selected-response
item data.
The bring.flexmirt() and write.flexmirt() functions were written by modifying
the read.flexmirt() function (Pritikin & Falk (2020) <doi:10.1177/0146621620929431>).
The bring.bilog() and bring.parscale() functions were written by modifying the read.bilog()
and read.parscale() functions, respectively (Weeks (2010) <doi:10.18637/jss.v035.i12>).
The bisection() function wa [...truncated...]
Author: Hwanggyu Lim [aut, cre],
Craig S. Wells [ctb],
James Howard [ctb],
Joshua Pritikin [ctb],
Jonathan P Weeks [ctb],
Jorge Gonzalez [ctb],
David Magis [ctb]
Maintainer: Hwanggyu Lim <hglim83@gmail.com>
Diff between irtQ versions 1.3.0 dated 2026-10-05 and 1.3.1 dated 2026-10-08
DESCRIPTION | 8 MD5 | 114 +- NAMESPACE | 1 NEWS.md | 117 ++ R/cac_rud.R | 8 R/catsib.R | 14 R/ctt.R | 69 + R/ctt_alpha.R | 24 R/ctt_distr.R | 25 R/ctt_item.R | 88 +- R/find_cut.R | 18 R/irtQ-package.R | 10 R/irtfit.R | 1587 +++++++++++++++++++-------------------- R/lwrc.R | 5 R/pcd2.R | 21 R/plot_irtfit.R | 4 R/rdif.R | 2 R/reval_mst.R | 56 + R/ripd.R | 4 R/run_mst.R | 381 ++++----- R/score_resp.R | 18 R/shape_df.R | 18 R/simMST.R | 5 R/simdat.R | 3 R/traceline.R | 6 README.md | 861 ++++++++++----------- inst/doc/irtQ.Rmd | 11 inst/doc/irtQ.html | 20 man/catsib.Rd | 3 man/ctt.Rd | 24 man/ctt_alpha.Rd | 26 man/ctt_distr.Rd | 8 man/ctt_item.Rd | 9 man/figures/README-example-2.png |binary man/figures/README-example-3.png |binary man/figures/README-example-4.png |binary man/figures/README-example-5.png |binary man/figures/README-example-6.png |binary man/figures/README-example-7.png |binary man/find_cut.Rd | 6 man/irtQ-package.Rd | 10 man/lwrc.Rd | 5 man/pcd2.Rd | 21 man/rdif.Rd | 2 man/reval_mst.Rd | 30 man/ripd.Rd | 4 man/run_mst.Rd | 76 + man/score_resp.Rd | 4 man/simMST.Rd | 5 man/traceline.Rd | 234 ++--- tests/testthat/test-cac_rud.R |only tests/testthat/test-ctt.R | 94 ++ tests/testthat/test-ctt_distr.R | 40 tests/testthat/test-dif.R | 22 tests/testthat/test-irtfit.R |only tests/testthat/test-reval_mst.R |only tests/testthat/test-run_mst.R |only tests/testthat/test-score_resp.R | 29 tests/testthat/test-shape_df.R |only tests/testthat/test-simdat.R |only vignettes/irtQ.Rmd | 11 61 files changed, 2367 insertions(+), 1794 deletions(-)
Title: Insect Ecology Data Analysis Toolkit
Description: A collection of analytical tools for insect ecology research,
currently covering age-stage, two-sex life table analysis,
dose-response bioassays, temperature-dependent development and insect
phenology prediction. The life table module follows the age-stage,
two-sex life table theory of Chi (1988) <doi:10.1093/ee/17.1.26> and
Chi et al. (2020) <doi:10.1127/entomologia/2020/0936>. It supports
fast batch processing of multi-group datasets, validates raw 'csv'
data, computes cohort size, mean fecundity, age-stage survival rates,
age-specific survival, age-specific fecundity, life expectancy, and
derived population parameters (net reproductive rate, intrinsic and
finite rates of increase, mean generation time), simultaneously
generates age-stage survival curves for all groups, and exports all
tabular results and plots to 'Excel' in a single run. The bioassay
module estimates lethal concentrations by the traditional and the
weighted (improved) linear regression methods and by pro [...truncated...]
Author: Wangyao Li [aut, cre, cph],
Yongsheng Zhang [aut],
Huan Yu [aut]
Maintainer: Wangyao Li <1561941342@qq.com>
Diff between insectecol versions 1.1.1 dated 2026-10-05 and 1.1.2 dated 2026-10-08
DESCRIPTION | 8 MD5 | 116 +-- NAMESPACE | 1 R/check_data.R | 7 R/emergence_calc.R | 12 R/emergence_export.R | 23 R/emergence_main.R | 122 ++- R/emergence_plot.R | 6 R/font.R | 451 ++++++++++++- R/gdd_calc.R | 14 R/gdd_export.R | 74 +- R/gdd_fit.R | 52 + R/gdd_main.R | 136 ++-- R/gdd_plot.R | 162 ++++ R/lc50_data.R | 6 R/lc50_export.R | 125 +-- R/lc50_export_auto.R | 438 ++++++------- R/lc50_main.R | 104 ++- R/lc50_plot.R | 139 ++-- R/lifetable_bootstrap.R | 1004 +++++++++++++++--------------- R/lifetable_calculate.R | 352 +++++----- R/lifetable_data.R | 10 R/lifetable_export.R | 277 ++++---- R/lifetable_indicators.R | 224 +++++- R/lifetable_main.R | 792 +++++++++++++---------- R/lifetable_plot.R | 326 +++++---- R/plot_path.R |only README.md | 62 + inst/CITATION | 2 man/calc_ex.Rd | 11 man/calc_exj.Rd |only man/calc_r.Rd | 15 man/emergence_analyze.Rd | 72 +- man/emergence_calc.Rd | 12 man/emergence_export.Rd | 2 man/emergence_export_plot.Rd | 2 man/figures/emergence.png |binary man/figures/gdd.png |binary man/figures/lc50.png |binary man/gdd_analyze.Rd | 92 +- man/gdd_calc.Rd | 14 man/gdd_export.Rd | 2 man/gdd_export_plot.Rd | 37 - man/gdd_plot.Rd | 10 man/lc50_analyze.Rd | 69 +- man/lc50_export.Rd | 4 man/lc50_export_auto.Rd | 4 man/lc50_plot.Rd | 7 man/lifeTable_analyze.Rd | 92 ++ man/lifeTable_boot_test.Rd | 4 man/lifeTable_bootstrap.Rd | 4 man/lifeTable_calculate.Rd | 7 man/lifeTable_calculate_all.Rd | 9 man/lifeTable_export.Rd | 31 man/lifeTable_plot.Rd | 21 tests/testthat/test-emergence.R | 21 tests/testthat/test-gdd.R | 79 ++ tests/testthat/test-lc50.R | 28 tests/testthat/test-life_table.R | 189 +++++ tests/testthat/twosex_ptw_example.csv |only tests/testthat/twosex_ptw_exj_example.txt |only 61 files changed, 3775 insertions(+), 2108 deletions(-)
Title: Statistical Consistency Checker for Published Research Results
Description: A conservative, assumption-aware statistical consistency checker
for already-extracted research-results text. Parses test statistics, effect
sizes, and confidence intervals across multiple citation styles including
American Psychological Association (APA), Harvard, Frontiers, PLOS ONE,
Scientific Reports, Nature Human Behaviour, PeerJ, eLife, PNAS, and others.
Recomputes effect sizes using all plausible variants when design is ambiguous,
and validates internal consistency. Supports t-tests, F-tests/ANOVA,
correlations, chi-square, z-tests, regression, and nonparametric tests.
Explicitly tracks all assumptions and uncertainty in output. Detects decision
errors (significance reversals) similar to 'statcheck'. From v0.4.0 file
extraction is no longer part of the package — pair with an external extractor
(e.g., 'docpluck' at <https://docpluck.app>) and pass the resulting text
to check_text(). Note: this package is under active development and results
should be independently verified. [...truncated...]
Author: Gilad Feldman [aut, cre]
Maintainer: Gilad Feldman <giladfel@gmail.com>
Diff between effectcheck versions 0.2.3 dated 2026-03-25 and 0.7.17 dated 2026-10-08
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|only effectcheck-0.7.17/effectcheck/tests/testthat/test-v065-bare-binomial.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v065-beta-precedes-t-binding.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v065-chi-subtype-gof-vs-independence.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v065-mcnemar-subtype-guard.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v065-welch-not-paired.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v066-bare-r-ci-no-p-effect-adoption.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v066-pearson-not-spearman-context-bleed.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v066-robma-model-averaged-r.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v066-table-comparison-column-and-dedup.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v066-within-anova-design.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v067-docpluck-v2498-eta2-r.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v068-continuation-subchunk-design.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v068-dedup-distinct-p-not-collapsed.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v068-equals-glyph-u00bc.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v068-interaction-p.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v068-mode-b-joint-paired-design.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v068-onesample-section-scope.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v068-robma-r-note-not-skip.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v070-robust-nonparametric-types.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v071-rank-test-estimand.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v0711-no-variants-not-cross-family.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v0712-table-row-domain-and-cross-table-dup.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v0713-uncaptioned-table-rows.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v0714-ci-verdict-premise.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v0714-generalized-eta2.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v0714-mediation-direct-vs-acme.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v0714-omnibus-contrast-undecided.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v0714-quoted-restatement.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v0714-welch-backsolved-n.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v0717-welch-stated-n-kept.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v074-paragraph-chunking.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v074-separator-review.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v075-dual-p-and-legend.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v075-locale-conflict.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v075-mean-diff-ci.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v075-methods-resample-count.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v076-docpluck-consumer-canary.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v076-docpluck-contract.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v076-outbox-0813-defects.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v078-ci-engine-labelling.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v079-chisq-n-backsolve-is-not-verification.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v079-ci-method-label-honesty.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v079-ci-severity-tiers.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v079-ci-symmetry-on-correlations.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v079-corr-bare-r-adopts-matched-df.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v079-corr-matched-df-is-ambiguous-not-resolved.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v079-corr-n-provenance-reaches-output.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v079-design-ambiguous-action-scope.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v079-estimate-outside-ci.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-v079-robust-family-nsource-undefined.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-version-fallback-honesty.R |only effectcheck-0.7.17/effectcheck/tests/testthat/test-z-u-effects.R |only effectcheck-0.7.17/effectcheck/vignettes/effectcheck.Rmd | 51 310 files changed, 21539 insertions(+), 4323 deletions(-)
Title: Read, Write, and Modify TOML Files
Description: Simple toolkit for working with TOML text. Based on tomledit which
allows for modifying TOML while preserving order, comments,and whitespace.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between toml versions 1.1.0 dated 2026-04-13 and 1.2.0 dated 2026-10-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ R/tomledit.R | 2 +- 4 files changed, 10 insertions(+), 7 deletions(-)
Title: Parameter Converter and Calculator for Health Technology
Assessment
Description: An interactive 'shiny' application for Health Technology
Assessment (HTA) parameter estimation. Converts between rates,
probabilities, odds, and hazard ratios (HR); extrapolates survival
curves (Exponential, Weibull, Log-Logistic); fits probabilistic
sensitivity analysis (PSA) distributions (Beta, Gamma, LogNormal,
Dirichlet) via the method of moments; calculates incremental
cost-effectiveness ratios (ICERs), net monetary benefit (NMB),
value-based pricing, and budget impact; adjusts costs for inflation,
discounting, and purchasing power parity (PPP) across 30 countries;
and adjusts background mortality using life-table methods. Designed
for researchers building cost-effectiveness and budget-impact models
who need auditable, formula-documented parameter transformations.
Methods include Zhang and Yu (1998)
<doi:10.1001/jama.280.19.1690> for odds ratio (OR) to relative
risk (RR) conversion and Chinn (2000, Statistics in Medicine, 19,
3127-3131) for effect-size transformations.
Author: Abhijit Pakhare [aut, cre],
Soumya Jain [aut],
Anvita Malhotra [aut],
Shivansh Verma [aut],
Biju Somen [aut],
Oshima Sachin [aut],
Beena Joshi [aut],
Ankur Joshi [aut]
Maintainer: Abhijit Pakhare <drpakhare@gmail.com>
Diff between ParCC versions 1.4.0 dated 2026-03-30 and 1.4.1 dated 2026-10-08
DESCRIPTION | 22 ++++++++-- MD5 | 28 +++++++------ NEWS.md | 19 +++++++++ R/mod_batch.R | 1 R/mod_core_conv.R | 67 ++++++++++++++++++++------------ R/mod_diagnostic.R | 18 +++++--- R/mod_home.R | 20 ++++++++- R/mod_hr_converter.R | 75 ++++++++++++++++++++++++------------ R/mod_psa.R | 2 R/mod_report.R | 72 +++++++++++++++++++++++++++++++--- R/mod_static_pages.R | 61 +++++++++++++++++++++++++++++ R/parcc_helpers.R | 7 ++- README.md | 13 ++++-- man/figures |only tests/testthat/test-hr-conversion.R | 21 +++++++--- 15 files changed, 331 insertions(+), 95 deletions(-)
Title: Ensemble Platform for Species Distribution Modeling
Description: Functions for species distribution modelling, to calibrate, evaluate, and project
species-environment relationships across space and time using multiple modelling algorithms and
ensemble forecasting. It accommodates diverse ecological data types (presence-only, presence-absence,
counts, multi-class abundance, or relative/absolute abundance) within a unified modelling workflow
which includes cross-validation schemes, pseudo-absence selection strategies, expanded model
parametrization options, a dozen of algorithms, and tools for exploring and visualizing outputs.
Author: Maya Gueguen [aut, cre] ,
Helene Blancheteau [aut],
Remi Lemaire-Patin [aut],
Wilfried Thuiller [aut]
Maintainer: Maya Gueguen <maya.gueguen@univ-grenoble-alpes.fr>
Diff between biomod2 versions 4.3-4-6 dated 2026-05-23 and 4.3-4-7 dated 2026-10-08
biomod2-4.3-4-6/biomod2/man/predict.bm.Rd |only biomod2-4.3-4-6/biomod2/man/predict.em.Rd |only biomod2-4.3-4-7/biomod2/DESCRIPTION | 33 +-- biomod2-4.3-4-7/biomod2/MD5 | 149 ++++++-------- biomod2-4.3-4-7/biomod2/R/BIOMOD_EnsembleForecasting.R | 33 ++- biomod2-4.3-4-7/biomod2/R/BIOMOD_FormatingData.R | 13 - biomod2-4.3-4-7/biomod2/R/BIOMOD_Modeling.R | 28 ++ biomod2-4.3-4-7/biomod2/R/BIOMOD_Projection.R | 64 +++--- biomod2-4.3-4-7/biomod2/R/biomod2_classes_0.R | 24 -- biomod2-4.3-4-7/biomod2/R/biomod2_classes_1.R | 84 +++---- biomod2-4.3-4-7/biomod2/R/biomod2_classes_3.R | 30 +- biomod2-4.3-4-7/biomod2/R/biomod2_classes_4.R | 80 ++----- biomod2-4.3-4-7/biomod2/R/biomod2_classes_5.R | 27 -- biomod2-4.3-4-7/biomod2/R/biomod2_internal.R | 106 ++++++--- biomod2-4.3-4-7/biomod2/R/bm_BinaryTransformation.R | 2 biomod2-4.3-4-7/biomod2/R/bm_FindOptimStat.R | 4 biomod2-4.3-4-7/biomod2/R/bm_ModelingOptions.R | 32 --- biomod2-4.3-4-7/biomod2/R/bm_PlotEvalBoxplot.R | 4 biomod2-4.3-4-7/biomod2/R/bm_PlotEvalMean.R | 4 biomod2-4.3-4-7/biomod2/R/bm_PlotRangeSize.R | 6 biomod2-4.3-4-7/biomod2/R/bm_PlotResponseCurves.R | 2 biomod2-4.3-4-7/biomod2/R/bm_PlotVarImpBoxplot.R | 2 biomod2-4.3-4-7/biomod2/R/bm_PseudoAbsences.R | 6 biomod2-4.3-4-7/biomod2/R/bm_RunModelsLoop.R | 34 ++- biomod2-4.3-4-7/biomod2/R/bm_SampleBinaryVector.R | 2 biomod2-4.3-4-7/biomod2/R/bm_Tuning.R | 55 +---- biomod2-4.3-4-7/biomod2/README.md | 8 biomod2-4.3-4-7/biomod2/build/partial.rdb |binary biomod2-4.3-4-7/biomod2/build/vignette.rds |binary biomod2-4.3-4-7/biomod2/inst/CITATION |only biomod2-4.3-4-7/biomod2/inst/doc/news.Rmd | 18 + biomod2-4.3-4-7/biomod2/inst/doc/news.html | 30 ++ biomod2-4.3-4-7/biomod2/man/BIOMOD.ensemble.models.out.Rd | 10 biomod2-4.3-4-7/biomod2/man/BIOMOD.formated.data.PA.Rd | 8 biomod2-4.3-4-7/biomod2/man/BIOMOD.formated.data.Rd | 8 biomod2-4.3-4-7/biomod2/man/BIOMOD.models.options.Rd | 10 biomod2-4.3-4-7/biomod2/man/BIOMOD.models.out.Rd | 10 biomod2-4.3-4-7/biomod2/man/BIOMOD.options.dataset.Rd | 8 biomod2-4.3-4-7/biomod2/man/BIOMOD.options.default.Rd | 8 biomod2-4.3-4-7/biomod2/man/BIOMOD.projection.out.Rd | 10 biomod2-4.3-4-7/biomod2/man/BIOMOD.rangesize.out.Rd | 10 biomod2-4.3-4-7/biomod2/man/BIOMOD.stored.data.Rd | 10 biomod2-4.3-4-7/biomod2/man/BIOMOD_EnsembleForecasting.Rd | 14 - biomod2-4.3-4-7/biomod2/man/BIOMOD_EnsembleModeling.Rd | 14 - biomod2-4.3-4-7/biomod2/man/BIOMOD_FormatingData.Rd | 14 - biomod2-4.3-4-7/biomod2/man/BIOMOD_LoadModels.Rd | 14 - biomod2-4.3-4-7/biomod2/man/BIOMOD_Modeling.Rd | 23 +- biomod2-4.3-4-7/biomod2/man/BIOMOD_Projection.Rd | 14 - biomod2-4.3-4-7/biomod2/man/BIOMOD_RangeSize.Rd | 14 - biomod2-4.3-4-7/biomod2/man/biomod2_ensemble_model.Rd | 10 biomod2-4.3-4-7/biomod2/man/biomod2_model.Rd | 10 biomod2-4.3-4-7/biomod2/man/bm_BinaryTransformation.Rd | 38 +-- biomod2-4.3-4-7/biomod2/man/bm_CrossValidation.Rd | 38 +-- biomod2-4.3-4-7/biomod2/man/bm_FindOptimStat.Rd | 42 +-- biomod2-4.3-4-7/biomod2/man/bm_MakeFormula.Rd | 38 +-- biomod2-4.3-4-7/biomod2/man/bm_ModelAnalysis.Rd | 50 ++-- biomod2-4.3-4-7/biomod2/man/bm_ModelingOptions.Rd | 43 ++-- biomod2-4.3-4-7/biomod2/man/bm_PlotEvalBoxplot.Rd | 50 ++-- biomod2-4.3-4-7/biomod2/man/bm_PlotEvalMean.Rd | 50 ++-- biomod2-4.3-4-7/biomod2/man/bm_PlotRangeSize.Rd | 50 ++-- biomod2-4.3-4-7/biomod2/man/bm_PlotResponseCurves.Rd | 50 ++-- biomod2-4.3-4-7/biomod2/man/bm_PlotVarImpBoxplot.Rd | 50 ++-- biomod2-4.3-4-7/biomod2/man/bm_PseudoAbsences.Rd | 38 +-- biomod2-4.3-4-7/biomod2/man/bm_RangeSize.Rd | 38 +-- biomod2-4.3-4-7/biomod2/man/bm_RunModelsLoop.Rd | 38 +-- biomod2-4.3-4-7/biomod2/man/bm_SRE.Rd | 38 +-- biomod2-4.3-4-7/biomod2/man/bm_SampleBinaryVector.Rd | 38 +-- biomod2-4.3-4-7/biomod2/man/bm_SampleFactorLevels.Rd | 38 +-- biomod2-4.3-4-7/biomod2/man/bm_Tuning.Rd | 56 ++--- biomod2-4.3-4-7/biomod2/man/bm_VariablesImportance.Rd | 38 +-- biomod2-4.3-4-7/biomod2/man/getters.bm.Rd | 6 biomod2-4.3-4-7/biomod2/man/getters.out.Rd | 6 biomod2-4.3-4-7/biomod2/man/load_stored_object.Rd | 4 biomod2-4.3-4-7/biomod2/man/predict2.bm.Rd | 36 +-- biomod2-4.3-4-7/biomod2/man/predict2.em.Rd | 16 - biomod2-4.3-4-7/biomod2/man/setters.Rd | 6 biomod2-4.3-4-7/biomod2/vignettes/news.Rmd | 18 + 77 files changed, 1033 insertions(+), 979 deletions(-)
Title: Draw from Sequence of 'My Man' Posts by Kevin Kruse
Description: Starting on the afternoon of July 17, 2026, Kevin Kruse fired off an astonishing
array of 'BlueSky' replies to an initial post of his featuring a certain government figure:
<https://bsky.app/profile/did:plc:cnpe7qvcyjrhm6w7w7e4atur/post/3mqum4mxsuk2g>. This lasted a week and generated
nearly seven hundred posts. A second wave started on August 12, 2026, with this post:
<https://bsky.app/profile/kevinmkruse.bsky.social/post/3mstvbjpagc2a>. A third wave started on August 17, 2026,
with <https://bsky.app/profile/kevinmkruse.bsky.social/post/3mtcpiw7gi22j>. A fourth wave started on August 27,
2026, with <https://bsky.app/profile/kevinmkruse.bsky.social/post/3mu3pugs2yk2f>. A fifth wave ran on August 30,
2026, beginning with <https://bsky.app/profile/kevinmkruse.bsky.social/post/3mudbzy5ksk25>. A sixth wave started
September 4, 2026, with <https://bsky.app/profile/kevinmkruse.bsky.social/post/3muparqtdkk2w>. A seventh wave
started September 12, 2026, wi [...truncated...]
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between myman versions 0.1.0 dated 2026-09-27 and 0.10.0 dated 2026-10-08
ChangeLog | 114 +++++++++++ DESCRIPTION | 15 - MD5 | 16 - NAMESPACE | 2 R/myman.R | 42 +++- README.md | 23 +- inst/NEWS.Rd | 23 ++ inst/myman/myman.csv | 490 +++++++++++++++++++++++++++++++++++++++++++++++++++ man/myman.Rd | 31 ++- 9 files changed, 714 insertions(+), 42 deletions(-)
Title: Microdata Infrastructure Tools for Firm-Level Microdata Research
Description: Supports the full analysis pipeline for researchers working with
firm-level microdata. Provides data tools for panel preparation (import,
outlier detection, classification harmonization), analytical methods
(production function estimation, capital stock measurement, markups,
intensity measures, distributions, regression, clustering), and disclosure
tools for tagging outputs with dominance and observation counts before
aggregation and publication.
Production function estimation implements methods by Ackerberg, Caves and
Frazer (2015) <doi:10.3982/ECTA13408>, Levinsohn and Petrin (2003)
<doi:10.1111/1467-937X.00246>, Wooldridge (2009)
<doi:10.1016/j.econlet.2009.04.026>, Petrin, Poi and Levinsohn (2004)
<doi:10.1177/1536867X0400400202>, and Arellano and Bond (1991)
<doi:10.2307/2297968> with the "too many instruments" correction by
Roodman (2009) <doi:10.1111/j.1468-0084.2008.00542.x>. Markup estimation
follows De Loecker and Warzynski (2012) <doi:1 [...truncated...]
Author: Daniele Aglio [aut],
Eric Bartelsman [aut],
Mirja Haelbig [aut],
Marco Miorandi [aut],
Johanna Weiss [aut, cre],
Alessandro Zona Mattioli [aut],
Julian Diaz-Acosta [ctb],
Alberto Ferreira [ctb],
Javier Miranda [ctb],
Marcelo Piemonte Ribeiro [ctb],
Re [...truncated...]
Maintainer: Johanna Weiss <johanna.weiss@iwhesl.onmicrosoft.com>
Diff between mditools versions 0.1.0 dated 2026-08-20 and 0.1.1 dated 2026-10-08
DESCRIPTION | 16 + MD5 | 85 +++++----- NAMESPACE | 54 +++--- NEWS.md |only R/hier_levels.R |only R/mdi_acf_prodest.R | 4 R/mdi_aggregate.R | 32 ++- R/mdi_clustering.R | 18 +- R/mdi_hier_apply.R | 2 R/mdi_import_data.R | 54 +++++- R/mdi_jointdist.R | 17 +- R/mdi_make_conc.R | 289 +++++++++++------------------------ R/mdi_outlier.R | 4 R/mdi_regress.R | 2 R/mditools-package.R | 7 R/utils.R | 47 +++++ README.md | 6 man/check_dt.Rd |only man/hier_levels.Rd |only man/mdi_acf_prodest.Rd | 22 +- man/mdi_aggregate.Rd | 75 +++++---- man/mdi_clustering.Rd | 130 ++++++++------- man/mdi_cs_prodest.Rd | 26 +-- man/mdi_disclose_crit.Rd | 76 ++++----- man/mdi_disclose_reg_tab.Rd | 48 +++-- man/mdi_dpgmm_prodest.Rd | 14 - man/mdi_estimate_markup.Rd | 10 - man/mdi_estimate_prodfun.Rd | 66 ++++--- man/mdi_hier_apply.Rd | 48 ++--- man/mdi_import_data.Rd | 70 +++++--- man/mdi_intensity.Rd | 8 man/mdi_jointdist.Rd | 45 +++-- man/mdi_lp_prodest.Rd | 18 +- man/mdi_make_conc.Rd | 44 +++-- man/mdi_ols_prodest.Rd | 14 - man/mdi_outlier.Rd | 12 - man/mdi_pim_capital.Rd | 26 +-- man/mdi_regress.Rd | 106 ++++++------ man/mdi_transition.Rd | 12 - man/mdi_wdrg_prodest.Rd | 6 man/mditools-package.Rd | 8 man/panel_lag_L.Rd |only tests/testthat/test-mdi_aggregate.R | 19 ++ tests/testthat/test-mdi_clustering.R | 37 ++++ tests/testthat/test-mdi_make_conc.R | 111 +++++++++++++ tests/testthat/test-mdi_outlier.R | 4 46 files changed, 996 insertions(+), 696 deletions(-)
Title: Read and Write General Transit Feed Specification (GTFS) Files
Description: Tools for the development of packages related to General
Transit Feed Specification (GTFS) files. Establishes a standard for
representing GTFS feeds using R data types. Provides fast and flexible
functions to read and write GTFS feeds while sticking to this
standard. Defines a basic 'gtfs' class which is meant to be extended
by packages that depend on it. And offers utility functions that
support checking the structure of GTFS objects.
Author: Daniel Herszenhut [aut] ,
Flavio Poletti [aut, cre],
Mark Padgham [aut],
Rafael H. M. Pereira [rev] ,
Tom Buckley [rev],
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Flavio Poletti <flavio.poletti@hotmail.ch>
Diff between gtfsio versions 1.2.1 dated 2026-05-20 and 1.2.2 dated 2026-10-08
DESCRIPTION | 8 +++--- MD5 | 34 ++++++++++++++-------------- NEWS.md | 7 +++++ R/import_gtfs.R | 13 ++++++++-- inst/doc/gtfsio.html | 3 +- inst/extdata/macosx.zip |only inst/extdata/na_strings.zip |only inst/reference/create_gtfs_reference_data.R | 13 ++++++---- inst/tinytest/test_import_gtfs.R | 19 +++++++++++++++ man/assert_gtfs.Rd | 4 +-- man/check_field_class.Rd | 6 ++-- man/check_field_exists.Rd | 6 ++-- man/check_file_exists.Rd | 6 ++-- man/export_gtfs.Rd | 4 +-- man/gtfsio-package.Rd | 1 man/gtfsio_error.Rd | 4 +-- man/import_gtfs.Rd | 7 +++-- man/new_gtfs.Rd | 4 +-- man/parent_function_error.Rd | 4 +-- 19 files changed, 92 insertions(+), 51 deletions(-)
Title: Visually Exploring Random Forests
Description: Graphic elements for exploring Random Forests using the
'randomForest' or 'randomForestSRC' package for survival, regression
and classification forests and 'ggplot2' package plotting. Implements
visualizations of the methods described in Breiman (2001)
<doi:10.1023/A:1010933404324> and Ishwaran, Kogalur, Blackstone, and
Lauer (2008) <doi:10.1214/08-AOAS169>.
Author: John Ehrlinger [aut, cre]
Maintainer: John Ehrlinger <john.ehrlinger@gmail.com>
Diff between ggRandomForests versions 3.5.3 dated 2026-09-11 and 3.5.4 dated 2026-10-08
DESCRIPTION | 8 MD5 | 57 +- NEWS.md | 81 +++ R/gg_partial.R | 9 R/gg_partial_rfsrc.R | 67 ++- R/gg_partial_varpro.R | 4 R/gg_udependent.R | 30 + R/kaplan.R | 31 - R/nelson.R | 84 +++ R/plot.gg_partial.R | 116 ++++- R/utils.R | 82 ++- inst/doc/ggRandomForests-classification.html | 45 +- inst/doc/ggRandomForests-regression.html | 53 +- inst/doc/ggRandomForests-survival.html | 61 +- inst/doc/ggRandomForests.html | 21 inst/doc/uvarpro.html | 21 inst/doc/varpro.html | 41 + man/gg_partial.Rd | 9 man/gg_partial_rfsrc.Rd | 20 man/gg_partial_varpro.Rd | 4 man/gg_udependent.Rd | 13 man/nelson.Rd | 18 man/plot.gg_partial.Rd | 7 man/plot.gg_partial_rfsrc.Rd | 19 tests/testthat/_snaps/snapshots/gg-partial-categorical.svg |only tests/testthat/_snaps/snapshots/gg-partial-rfsrc-categorical-survival.svg |only tests/testthat/_snaps/snapshots/gg-partial-rfsrc-continuous-survival-by-group.svg |only tests/testthat/test_gg_partial.R | 212 ++++++++++ tests/testthat/test_gg_udependent.R | 42 + tests/testthat/test_kaplan_nelson.R | 172 +++++++- tests/testthat/test_snapshots.R | 43 ++ 31 files changed, 1109 insertions(+), 261 deletions(-)
More information about ggRandomForests at CRAN
Permanent link
Title: 'Amazon Web Services' Compute Services
Description: Interface to 'Amazon Web Services' compute services,
including 'Elastic Compute Cloud' ('EC2'), 'Lambda'
functions-as-a-service, containers, batch processing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.compute versions 0.10.0 dated 2026-05-31 and 0.11.0 dated 2026-10-08
DESCRIPTION | 11 MD5 | 571 - NAMESPACE | 36 R/apprunner_interfaces.R | 222 R/apprunner_operations.R | 111 R/apprunner_service.R | 4 R/batch_interfaces.R | 300 R/batch_operations.R | 265 R/batch_service.R | 7 R/braket_interfaces.R | 102 R/braket_operations.R | 51 R/braket_service.R | 8 R/computeoptimizer_interfaces.R | 168 R/computeoptimizer_operations.R | 100 R/computeoptimizer_service.R | 4 R/ec2_interfaces.R | 4851 +++------- R/ec2_operations.R | 4064 ++++++-- R/ec2_service.R | 52 R/ec2instanceconnect_interfaces.R | 12 R/ec2instanceconnect_operations.R | 6 R/ec2instanceconnect_service.R | 4 R/ecr_interfaces.R | 348 R/ecr_operations.R | 174 R/ecr_service.R | 6 R/ecrpublic_interfaces.R | 138 R/ecrpublic_operations.R | 69 R/ecrpublic_service.R | 6 R/ecs_interfaces.R | 462 R/ecs_operations.R | 319 R/ecs_service.R | 4 R/eks_interfaces.R | 444 R/eks_operations.R | 425 R/eks_service.R | 10 R/elasticbeanstalk_interfaces.R | 237 R/elasticbeanstalk_operations.R | 338 R/elasticbeanstalk_service.R | 38 R/emrcontainers_interfaces.R | 158 R/emrcontainers_operations.R | 154 R/emrcontainers_service.R | 8 R/emrserverless_interfaces.R | 132 R/emrserverless_operations.R | 66 R/emrserverless_service.R | 4 R/imagebuilder_interfaces.R | 462 R/imagebuilder_operations.R | 950 + R/imagebuilder_service.R | 86 R/lambda_interfaces.R | 506 - R/lambda_operations.R | 476 R/lambda_service.R | 9 R/lightsail_interfaces.R | 976 -- R/lightsail_operations.R | 544 - R/lightsail_service.R | 5 R/proton_interfaces.R | 522 - R/proton_operations.R | 261 R/proton_service.R | 4 R/serverlessapplicationrepository_interfaces.R | 78 R/serverlessapplicationrepository_operations.R | 42 R/serverlessapplicationrepository_service.R | 4 R/sysdata.rda |only man/apprunner.Rd | 4 man/batch.Rd | 7 man/batch_cancel_job.Rd | 4 man/batch_cancel_jobs.Rd |only man/batch_create_compute_environment.Rd | 7 man/batch_register_job_definition.Rd | 4 man/batch_terminate_job.Rd | 4 man/batch_terminate_jobs.Rd |only man/batch_terminate_service_job.Rd | 2 man/batch_terminate_service_jobs.Rd |only man/batch_update_compute_environment.Rd | 8 man/braket.Rd | 6 man/computeoptimizer.Rd | 4 man/computeoptimizer_put_recommendation_preferences.Rd | 11 man/ec2.Rd | 50 man/ec2_allocate_hosts.Rd | 3 man/ec2_associate_application_status_check.Rd |only man/ec2_attach_image_watermark.Rd |only man/ec2_authorize_security_group_ingress.Rd | 2 man/ec2_batch_modify_ipam_routing_policy_registrations.Rd |only man/ec2_cancel_capacity_reservation.Rd | 11 man/ec2_copy_image.Rd | 2 man/ec2_copy_snapshot.Rd | 2 man/ec2_copy_volumes.Rd | 8 man/ec2_create_application_status_check.Rd |only man/ec2_create_capacity_reservation_cancellation_quote.Rd |only man/ec2_create_capacity_reservation_date_change_quote.Rd |only man/ec2_create_capacity_reservation_fleet.Rd | 4 man/ec2_create_client_vpn_endpoint.Rd | 5 man/ec2_create_fleet.Rd | 4 man/ec2_create_flow_logs.Rd | 7 man/ec2_create_image.Rd | 21 man/ec2_create_interruptible_capacity_reservation_allocation.Rd | 5 man/ec2_create_ipam_internet_registry_association.Rd |only man/ec2_create_ipam_routing_policy_registration.Rd |only man/ec2_create_placement_group.Rd | 3 man/ec2_create_replace_root_volume_task.Rd | 17 man/ec2_create_traffic_mirror_filter_rule.Rd | 2 man/ec2_create_transit_gateway_policy_table_entry.Rd |only man/ec2_create_vpc_endpoint.Rd | 16 man/ec2_delete_application_status_check.Rd |only man/ec2_delete_client_vpn_endpoint_authorization_policy.Rd |only man/ec2_delete_ipam_internet_registry_association.Rd |only man/ec2_delete_ipam_routing_policy_registration.Rd |only man/ec2_delete_placement_group.Rd | 2 man/ec2_delete_transit_gateway_policy_table_entry.Rd |only man/ec2_describe_account_vpc_encryption_control.Rd |only man/ec2_describe_application_status.Rd |only man/ec2_describe_application_status_check_associations.Rd |only man/ec2_describe_application_status_checks.Rd |only man/ec2_describe_capacity_reservation_cancellation_quotes.Rd |only man/ec2_describe_capacity_reservation_date_change_quotes.Rd |only man/ec2_describe_capacity_reservation_topology.Rd | 2 man/ec2_describe_images.Rd | 9 man/ec2_describe_instance_status.Rd | 1 man/ec2_describe_ipam_internet_registry_associations.Rd |only man/ec2_describe_placement_groups.Rd | 2 man/ec2_describe_volumes_modifications.Rd | 5 man/ec2_describe_vpc_endpoints.Rd | 2 man/ec2_detach_image_watermark.Rd |only man/ec2_disable_application_status_check_suppression.Rd |only man/ec2_disassociate_application_status_check.Rd |only man/ec2_enable_application_status_check_suppression.Rd |only man/ec2_enable_ipam_internet_registry_association.Rd |only man/ec2_get_client_vpn_endpoint_authorization_policy.Rd |only man/ec2_get_ipam_discovered_routes.Rd |only man/ec2_get_ipam_internet_registry_association_asns.Rd |only man/ec2_get_ipam_internet_registry_association_cidrs.Rd |only man/ec2_get_ipam_route_origin_authorizations.Rd |only man/ec2_get_ipam_route_protection_findings.Rd |only man/ec2_get_ipam_routing_policy_registration_deltas.Rd |only man/ec2_get_ipam_routing_policy_registrations.Rd |only man/ec2_get_spot_placement_scores.Rd | 7 man/ec2_get_transit_gateway_policy_table_entries.Rd | 13 man/ec2_modify_account_vpc_encryption_control.Rd |only man/ec2_modify_application_status_check.Rd |only man/ec2_modify_capacity_reservation.Rd | 11 man/ec2_modify_client_vpn_endpoint.Rd | 5 man/ec2_modify_client_vpn_endpoint_authorization_policy.Rd |only man/ec2_modify_ipam_routing_policy_registration.Rd |only man/ec2_modify_transit_gateway_policy_table_entry.Rd |only man/ec2_modify_vpc_endpoint_payer_responsibility.Rd |only man/ec2_replace_image_instance_type_specification.Rd |only man/ec2_revoke_security_group_ingress.Rd | 2 man/ec2_update_interruptible_capacity_reservation_allocation.Rd | 9 man/ec2_validate_security_group_quotas_for_interface.Rd |only man/ec2instanceconnect.Rd | 4 man/ecr.Rd | 4 man/ecrpublic.Rd | 4 man/ecs.Rd | 4 man/ecs_create_daemon.Rd | 11 man/ecs_create_express_gateway_service.Rd | 30 man/ecs_create_service.Rd | 5 man/ecs_list_daemons.Rd | 2 man/ecs_register_daemon_task_definition.Rd | 12 man/ecs_update_daemon.Rd | 11 man/ecs_update_express_gateway_service.Rd | 22 man/ecs_update_service.Rd | 5 man/eks.Rd | 10 man/eks_activate_certificate_authority.Rd |only man/eks_cancel_update.Rd |only man/eks_create_certificate_authority.Rd |only man/eks_create_cluster.Rd | 11 man/eks_delete_certificate_authority.Rd |only man/eks_describe_certificate_authority.Rd |only man/eks_list_certificate_authorities.Rd |only man/eks_update_cluster_config.Rd | 13 man/eks_update_cluster_version.Rd | 7 man/elasticbeanstalk.Rd | 36 man/elasticbeanstalk_associate_environment_operations_role.Rd | 5 man/elasticbeanstalk_create_application_version.Rd | 23 man/elasticbeanstalk_create_configuration_template.Rd | 12 man/elasticbeanstalk_create_environment.Rd | 18 man/elasticbeanstalk_describe_account_attributes.Rd | 6 man/elasticbeanstalk_describe_applications.Rd | 2 man/elasticbeanstalk_describe_configuration_settings.Rd | 4 man/elasticbeanstalk_describe_environment_health.Rd | 2 man/elasticbeanstalk_describe_environment_resources.Rd | 12 man/elasticbeanstalk_describe_environments.Rd | 8 man/elasticbeanstalk_describe_events.Rd | 18 man/elasticbeanstalk_describe_instances_health.Rd | 10 man/elasticbeanstalk_disassociate_environment_operations_role.Rd | 5 man/elasticbeanstalk_list_platform_branches.Rd | 5 man/elasticbeanstalk_list_platform_versions.Rd | 5 man/elasticbeanstalk_list_tags_for_resource.Rd | 4 man/elasticbeanstalk_rebuild_environment.Rd | 10 man/elasticbeanstalk_request_environment_info.Rd | 4 man/elasticbeanstalk_restart_app_server.Rd | 4 man/elasticbeanstalk_retrieve_environment_info.Rd | 4 man/elasticbeanstalk_terminate_environment.Rd | 12 man/elasticbeanstalk_update_application.Rd | 2 man/elasticbeanstalk_update_environment.Rd | 18 man/elasticbeanstalk_update_tags_for_resource.Rd | 4 man/emrcontainers.Rd | 8 man/emrcontainers_create_managed_endpoint.Rd | 5 man/emrcontainers_create_virtual_cluster.Rd | 10 man/emrcontainers_delete_security_configuration.Rd |only man/emrcontainers_delete_virtual_cluster.Rd | 2 man/emrcontainers_describe_virtual_cluster.Rd | 2 man/emrcontainers_list_virtual_clusters.Rd | 2 man/emrcontainers_update_virtual_cluster.Rd |only man/emrserverless.Rd | 4 man/imagebuilder.Rd | 86 man/imagebuilder_cancel_image_creation.Rd | 6 man/imagebuilder_cancel_lifecycle_execution.Rd | 7 man/imagebuilder_create_component.Rd | 12 man/imagebuilder_create_container_recipe.Rd | 25 man/imagebuilder_create_distribution_configuration.Rd | 13 man/imagebuilder_create_image.Rd | 25 man/imagebuilder_create_image_pipeline.Rd | 35 man/imagebuilder_create_image_recipe.Rd | 26 man/imagebuilder_create_infrastructure_configuration.Rd | 33 man/imagebuilder_create_lifecycle_policy.Rd | 23 man/imagebuilder_create_workflow.Rd | 22 man/imagebuilder_delete_component.Rd | 2 man/imagebuilder_delete_container_recipe.Rd | 2 man/imagebuilder_delete_distribution_configuration.Rd | 2 man/imagebuilder_delete_image_pipeline.Rd | 2 man/imagebuilder_delete_infrastructure_configuration.Rd | 2 man/imagebuilder_delete_lifecycle_policy.Rd | 4 man/imagebuilder_delete_workflow.Rd | 2 man/imagebuilder_distribute_image.Rd | 23 man/imagebuilder_get_component.Rd | 6 man/imagebuilder_get_component_policy.Rd | 4 man/imagebuilder_get_distribution_configuration.Rd | 4 man/imagebuilder_get_image.Rd | 6 man/imagebuilder_get_image_pipeline.Rd | 4 man/imagebuilder_get_image_policy.Rd | 4 man/imagebuilder_get_image_recipe.Rd | 6 man/imagebuilder_get_image_recipe_policy.Rd | 4 man/imagebuilder_get_infrastructure_configuration.Rd | 4 man/imagebuilder_get_lifecycle_execution.Rd | 9 man/imagebuilder_get_lifecycle_policy.Rd | 4 man/imagebuilder_get_marketplace_resource.Rd | 6 man/imagebuilder_get_workflow.Rd | 6 man/imagebuilder_get_workflow_execution.Rd | 6 man/imagebuilder_get_workflow_step_execution.Rd | 8 man/imagebuilder_import_component.Rd | 16 man/imagebuilder_import_disk_image.Rd | 16 man/imagebuilder_import_vm_image.Rd | 17 man/imagebuilder_list_component_build_versions.Rd | 12 man/imagebuilder_list_components.Rd | 15 man/imagebuilder_list_container_recipes.Rd | 6 man/imagebuilder_list_distribution_configurations.Rd | 4 man/imagebuilder_list_image_build_versions.Rd | 6 man/imagebuilder_list_image_packages.Rd | 10 man/imagebuilder_list_image_pipeline_images.Rd | 4 man/imagebuilder_list_image_pipelines.Rd | 4 man/imagebuilder_list_image_recipes.Rd | 4 man/imagebuilder_list_image_scan_finding_aggregations.Rd | 11 man/imagebuilder_list_image_scan_findings.Rd | 14 man/imagebuilder_list_images.Rd | 12 man/imagebuilder_list_infrastructure_configurations.Rd | 4 man/imagebuilder_list_lifecycle_execution_resources.Rd | 14 man/imagebuilder_list_lifecycle_executions.Rd | 10 man/imagebuilder_list_lifecycle_policies.Rd | 11 man/imagebuilder_list_waiting_workflow_steps.Rd | 10 man/imagebuilder_list_workflow_build_versions.Rd | 6 man/imagebuilder_list_workflow_executions.Rd | 4 man/imagebuilder_list_workflow_step_executions.Rd | 4 man/imagebuilder_list_workflows.Rd | 14 man/imagebuilder_put_component_policy.Rd | 2 man/imagebuilder_put_container_recipe_policy.Rd | 4 man/imagebuilder_put_image_policy.Rd | 4 man/imagebuilder_put_image_recipe_policy.Rd | 2 man/imagebuilder_retry_image.Rd | 9 man/imagebuilder_send_workflow_step_action.Rd | 16 man/imagebuilder_start_image_pipeline_execution.Rd | 6 man/imagebuilder_start_resource_state_update.Rd | 19 man/imagebuilder_update_distribution_configuration.Rd | 8 man/imagebuilder_update_image_pipeline.Rd | 30 man/imagebuilder_update_infrastructure_configuration.Rd | 26 man/imagebuilder_update_lifecycle_policy.Rd | 16 man/lambda.Rd | 7 man/lambda_add_permission.Rd | 14 man/lambda_create_capacity_provider.Rd | 8 man/lambda_create_event_source_mapping.Rd | 24 man/lambda_create_function.Rd | 22 man/lambda_delete_resource_policy.Rd |only man/lambda_get_durable_execution.Rd | 4 man/lambda_get_resource_policy.Rd |only man/lambda_invoke.Rd | 4 man/lambda_invoke_with_response_stream.Rd | 16 man/lambda_list_durable_executions_by_function.Rd | 2 man/lambda_list_layer_versions.Rd | 8 man/lambda_list_layers.Rd | 8 man/lambda_publish_layer_version.Rd | 8 man/lambda_put_resource_policy.Rd |only man/lambda_update_capacity_provider.Rd | 8 man/lambda_update_event_source_mapping.Rd | 34 man/lambda_update_function_code.Rd | 21 man/lambda_update_function_configuration.Rd | 4 man/lightsail.Rd | 5 man/lightsail_create_distribution.Rd | 15 man/lightsail_create_relational_database.Rd | 4 man/lightsail_get_profile.Rd |only man/lightsail_update_distribution.Rd | 17 man/proton.Rd | 4 man/serverlessapplicationrepository.Rd | 4 tests/testthat.R |only tests/testthat/test_apprunner.R | 14 tests/testthat/test_batch.R | 9 tests/testthat/test_braket.R | 2 tests/testthat/test_computeoptimizer.R | 3 tests/testthat/test_ec2.R | 366 tests/testthat/test_ec2instanceconnect.R | 2 tests/testthat/test_ecr.R | 7 tests/testthat/test_ecrpublic.R | 4 tests/testthat/test_ecs.R | 10 tests/testthat/test_eks.R | 7 tests/testthat/test_elasticbeanstalk.R | 10 tests/testthat/test_emrcontainers.R | 5 tests/testthat/test_emrserverless.R | 3 tests/testthat/test_imagebuilder.R | 17 tests/testthat/test_lambda.R | 7 tests/testthat/test_lightsail.R | 2 tests/testthat/test_proton.R | 10 tests/testthat/test_serverlessapplicationrepository.R | 3 316 files changed, 12014 insertions(+), 9639 deletions(-)
Title: Idealisation of Patch Clamp Recordings
Description: Implements the model-free multiscale idealisation approaches: Jump-Segmentation by MUltiResolution Filter (JSMURF), Hotz et al. (2013) <doi:10.1109/TNB.2013.2284063>, JUmp Local dEconvolution Segmentation filter (JULES), Pein et al. (2018) <doi:10.1109/TNB.2018.2845126>, and Heterogeneous Idealization by Local testing and DEconvolution (HILDE), Pein et al. (2021) <doi:10.1109/TNB.2020.3031202>. Further details on how to use them are given in Pein, Eltzner and Munk (2021) <doi:10.1007/s00249-021-01506-8>.
Author: Florian Pein [aut, cre],
Timo Aspelmeier [ctb]
Maintainer: Florian Pein <f.pein@lancaster.ac.uk>
This is a re-admission after prior archival of version 1.2-0 dated 2025-06-27
Diff between clampSeg versions 1.2-0 dated 2025-06-27 and 1.3-0 dated 2026-10-08
clampSeg-1.2-0/clampSeg/build/vignette.rds |only clampSeg-1.2-0/clampSeg/inst/doc |only clampSeg-1.2-0/clampSeg/vignettes |only clampSeg-1.3-0/clampSeg/ChangeLog | 51 +++++++ clampSeg-1.3-0/clampSeg/DESCRIPTION | 17 +- clampSeg-1.3-0/clampSeg/MD5 | 54 ++----- clampSeg-1.3-0/clampSeg/build/partial.rdb |only clampSeg-1.3-0/clampSeg/inst/CITATION | 16 ++ clampSeg-1.3-0/clampSeg/man/clampSeg-package.Rd | 62 +++++---- clampSeg-1.3-0/clampSeg/man/createLocalList.Rd | 32 +++- clampSeg-1.3-0/clampSeg/man/deconvolveLocally.Rd | 14 +- clampSeg-1.3-0/clampSeg/man/getCritVal.Rd | 47 +++++- clampSeg-1.3-0/clampSeg/man/hilde.Rd | 82 ++++++++---- clampSeg-1.3-0/clampSeg/man/improveSmallScales.Rd | 50 ++++--- clampSeg-1.3-0/clampSeg/man/jsmurf.Rd | 53 +++++-- clampSeg-1.3-0/clampSeg/man/jules.Rd | 53 +++++-- clampSeg-1.3-0/clampSeg/man/lowpassFilter.Rd | 19 ++ clampSeg-1.3-0/clampSeg/man/stepDetection.Rd | 44 ++++-- clampSeg-1.3-0/clampSeg/tests/testthat.R | 7 - clampSeg-1.3-0/clampSeg/tests/testthat/test_cacheLocation.R |only 20 files changed, 414 insertions(+), 187 deletions(-)
Title: Word and Document Vector Models
Description: Create dense vector representation of words and documents using 'quanteda'. Implements Word2vec (Mikolov et al., 2013) <doi:10.48550/arXiv.1310.4546>, Doc2vec (Le & Mikolov, 2014) <doi:10.48550/arXiv.1405.4053> and Latent Semantic Analysis (Deerwester et al., 1990) <doi:10.1002/(SICI)1097-4571(199009)41:6%3C391::AID-ASI1%3E3.0.CO;2-9>.
Author: Kohei Watanabe [aut, cre, cph] ,
Jan Wijffels [aut] ,
BNOSAC [cph] ,
Max Fomichev [ctb, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between wordvector versions 0.6.4 dated 2026-09-10 and 0.6.5 dated 2026-10-08
DESCRIPTION | 8 - MD5 | 32 ++++--- NAMESPACE | 13 ++ NEWS.md | 7 + R/as.doc2vec.R | 97 ++++++++++++++++------ R/as.word2vec.R | 31 +++---- R/doc2vec.R | 6 - R/lsa.R | 21 ++-- R/object-builder.R |only R/utils.R | 25 +++++ R/word2vec.R | 94 --------------------- R/wordvector.R |only inst/WORDLIST | 6 + man/as.textmodel_doc2vec.Rd | 14 ++- man/check_model.Rd |only tests/testthat/test-as.doc2vec.R | 153 ++++++++++++++++++++++++++++------- tests/testthat/test-as.word2vec.R | 7 + tests/testthat/test-lsa.R | 16 ++- tests/testthat/test-object-builder.R |only 19 files changed, 326 insertions(+), 204 deletions(-)
Title: Access Nature Media Repositories
Description: Streamline searching, downloading and formatting of nature media files (e.g. audios, photos) from online repositories. The package offers functions for obtaining media metadata from online repositories, downloading associated media files and updating data sets with new records.
Author: Marcelo Araya-Salas [aut, cre] ,
Jorge Elizondo-Calvo [aut] ,
Alejandro Rico-Guevara [aut] ,
Hugo Gruson [rev] ,
Eric R Scott [rev]
Maintainer: Marcelo Araya-Salas <marcelo.araya@ucr.ac.cr>
Diff between suwo versions 0.2.1 dated 2026-04-20 and 0.2.2 dated 2026-10-08
DESCRIPTION | 25 MD5 | 91 +- NAMESPACE | 1 NEWS.md | 133 ++- R/access_wikiaves.R |only R/download_media.R | 33 R/find_duplicates.R | 43 - R/internal_functions.R | 392 ++++++++++- R/map_locations.R | 72 ++ R/query_gbif.R | 2 R/query_macaulay.R | 3 R/query_wikiaves.R | 248 +++++-- R/query_xenocanto.R | 131 +++ R/remove_duplicates.R | 7 R/sysdata.rda |binary R/template_params.R | 5 R/update_metadata.R | 62 + README.md | 208 +++--- build/vignette.rds |binary inst/CITATION | 8 inst/doc/suwo.Rmd | 815 ++++++++++++------------ inst/doc/suwo.html | 949 ++++++++++++---------------- inst/figures/logo.png |binary man/access_wikiaves.Rd |only man/download_media.Rd | 16 man/figures/logo.png |binary man/find_duplicates.Rd | 8 man/map_locations.Rd | 21 man/query_gbif.Rd | 1 man/query_wikiaves.Rd | 166 ++-- man/query_xenocanto.Rd | 64 + man/remove_duplicates.Rd | 7 man/template_params.Rd | 5 man/update_metadata.Rd | 53 + tests/testthat/test_download_media.R | 6 tests/testthat/test_internals.R | 4 tests/testthat/test_query_gbif.R | 2 tests/testthat/test_query_inaturalist.R | 2 tests/testthat/test_query_wikiaves.R | 40 - tests/testthat/test_query_xenocanto.R | 38 + tests/testthat/test_update_metadata.R | 27 tests/testthat/test_wikiaves_helpers.R |only vignettes/precompile.R | 10 vignettes/query_function_summary.txt | 10 vignettes/references.bib |only vignettes/suwo.Rmd | 815 ++++++++++++------------ vignettes/suwo.Rmd.orig | 88 ++ vignettes/workflow_diagram.png |binary vignettes/xenocanto_annotations_queries.rds |only 49 files changed, 2839 insertions(+), 1772 deletions(-)
Title: Supplementary Idiomatic Utilities and Extensions
Description: Miscellaneous supplementary functions designed to follow idiomatic 'R' conventions. Some functions are simple wrappers that reduce repetitive code, while others address common tasks or extend existing 'R' functions.
Author: Luke Jenkins [aut, cre, cph]
Maintainer: Luke Jenkins <luke-jenkins-dev@outlook.com>
Diff between suppr versions 1.0.1 dated 2026-09-07 and 1.1.0 dated 2026-10-08
DESCRIPTION | 6 MD5 | 15 + NAMESPACE | 254 ++++++++++++++++----------------- NEWS.md | 24 +-- R/character.r | 32 ++++ README.md | 12 - man/rm.prefix.Rd |only src/prefix_suffix.c |only src/suppr-package.c | 4 tests/testthat/test-rm.prefix_suffix.r |only 10 files changed, 197 insertions(+), 150 deletions(-)
Title: The Q Approach to Consensus Building
Description: Implements a workflow based on Q method to support
consensus-building processes. It prepares participant rankings, selects
and fits group perspectives, calculates consensus priority scores,
validates results by bootstrap resampling, and produces publication-ready
figures. The underlying method is described by Geschke et al. (2022)
"The Q approach to consensus building: integrating diverse perspectives
to guide decision-making" <doi:10.32942/X2F59S>.
Author: Jonas Geschke [aut, cre]
Maintainer: Jonas Geschke <hallo@qapproach.app>
Diff between qapproach versions 0.1.1 dated 2026-09-22 and 0.1.2 dated 2026-10-08
DESCRIPTION | 6 MD5 | 57 + NAMESPACE | 4 NEWS.md | 52 + R/analysis.R | 89 +- R/api-documentation.R | 22 R/validation.R | 483 +++++++++++-- R/visualization.R | 1084 ++++++++++++++++++++++++++++++ inst/COPYRIGHTS |only inst/doc/qapproach.pdf |binary inst/extdata |only man/agreement_across_levels.Rd |only man/plot_hierarchical_levels.Rd |only man/plot_sdg_cps.Rd |only man/plot_sdg_diamonds.Rd |only man/qapproach-bootstrap.Rd | 3 man/qapproach.Rd | 19 man/validate.Rd | 17 man/validation_cps.Rd | 7 man/validation_means.Rd | 23 tests/testthat/Rplots.pdf |only tests/testthat/test-bootstrap-alignment.R | 2 tests/testthat/test-prepare-rankings.R | 12 tests/testthat/test-validation-api.R | 200 +++++ tests/testthat/test-visualization-api.R | 170 ++++ 25 files changed, 2097 insertions(+), 153 deletions(-)
Title: 'Amazon Web Services' Security, Identity, & Compliance Services
Description: Interface to 'Amazon Web Services' security, identity, and
compliance services, including the 'Identity & Access Management'
('IAM') service for managing access to services and resources, and
more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.security.identity versions 0.10.0 dated 2026-05-31 and 0.11.0 dated 2026-10-08
DESCRIPTION | 11 MD5 | 580 +++--- NAMESPACE | 36 R/accessanalyzer_interfaces.R | 207 -- R/accessanalyzer_operations.R | 117 - R/accessanalyzer_service.R | 6 R/account_interfaces.R | 102 - R/account_operations.R | 166 + R/account_service.R | 9 R/acm_interfaces.R | 299 ++- R/acm_operations.R | 845 +++++++++- R/acm_service.R | 29 R/acmpca_interfaces.R | 105 - R/acmpca_operations.R | 73 R/acmpca_service.R | 4 R/cleanroomsml_interfaces.R | 309 +-- R/cleanroomsml_operations.R | 177 +- R/cleanroomsml_service.R | 4 R/clouddirectory_interfaces.R | 393 +--- R/clouddirectory_operations.R | 198 +- R/clouddirectory_service.R | 6 R/cloudhsm_interfaces.R | 120 - R/cloudhsm_operations.R | 60 R/cloudhsm_service.R | 4 R/cloudhsmv2_interfaces.R | 108 - R/cloudhsmv2_operations.R | 54 R/cloudhsmv2_service.R | 6 R/cognitoidentity_interfaces.R | 126 - R/cognitoidentity_operations.R | 69 R/cognitoidentity_service.R | 6 R/cognitoidentityprovider_interfaces.R | 793 +++------ R/cognitoidentityprovider_operations.R | 799 +++++++-- R/cognitoidentityprovider_service.R | 16 R/cognitosync_interfaces.R | 99 - R/cognitosync_operations.R | 51 R/cognitosync_service.R | 4 R/detective_interfaces.R | 141 - R/detective_operations.R | 87 - R/detective_service.R | 6 R/directoryservice_interfaces.R | 480 +---- R/directoryservice_operations.R | 240 +- R/directoryservice_service.R | 4 R/fms_interfaces.R | 225 -- R/fms_operations.R | 126 - R/fms_service.R | 4 R/guardduty_interfaces.R | 663 +++---- R/guardduty_operations.R | 814 ++++++++- R/guardduty_service.R | 21 R/iam_interfaces.R | 835 +++------ R/iam_operations.R | 703 ++++++-- R/iam_service.R | 10 R/iamrolesanywhere_interfaces.R | 180 -- R/iamrolesanywhere_operations.R | 90 - R/iamrolesanywhere_service.R | 4 R/identitystore_interfaces.R | 144 - R/identitystore_operations.R | 259 ++- R/identitystore_service.R | 17 R/inspector2_interfaces.R | 510 ++---- R/inspector2_operations.R | 452 ++++- R/inspector2_service.R | 14 R/inspector_interfaces.R | 192 -- R/inspector_operations.R | 119 - R/inspector_service.R | 6 R/kms_interfaces.R | 282 +-- R/kms_operations.R | 164 + R/kms_service.R | 4 R/macie2_interfaces.R | 486 +---- R/macie2_operations.R | 243 +- R/macie2_service.R | 6 R/pcaconnectorad_interfaces.R | 117 - R/pcaconnectorad_operations.R | 75 R/pcaconnectorad_service.R | 4 R/ram_interfaces.R | 210 -- R/ram_operations.R | 105 - R/ram_service.R | 4 R/secretsmanager_interfaces.R | 132 - R/secretsmanager_operations.R | 69 R/secretsmanager_service.R | 4 R/securityhub_interfaces.R | 754 +++----- R/securityhub_operations.R | 698 ++++++-- R/securityhub_service.R | 16 R/securitylake_interfaces.R | 186 -- R/securitylake_operations.R | 93 - R/securitylake_service.R | 4 R/shield_interfaces.R | 216 -- R/shield_operations.R | 108 - R/shield_service.R | 4 R/sso_interfaces.R | 21 R/sso_operations.R | 12 R/sso_service.R | 4 R/ssoadmin_interfaces.R | 456 +---- R/ssoadmin_operations.R | 244 +- R/ssoadmin_service.R | 4 R/ssooidc_interfaces.R | 24 R/ssooidc_operations.R | 12 R/ssooidc_service.R | 6 R/sts_interfaces.R | 66 R/sts_operations.R | 63 R/sts_service.R | 12 R/sysdata.rda |only R/verifiedpermissions_interfaces.R | 204 -- R/verifiedpermissions_operations.R | 102 - R/verifiedpermissions_service.R | 4 R/waf_interfaces.R | 462 +---- R/waf_operations.R | 231 +- R/waf_service.R | 4 R/wafregional_interfaces.R | 486 +---- R/wafregional_operations.R | 243 +- R/wafregional_service.R | 4 R/wafv2_interfaces.R | 370 +--- R/wafv2_operations.R | 347 +++- R/wafv2_service.R | 8 man/accessanalyzer.Rd | 4 man/account.Rd | 9 man/account_get_primary_email_update_status.Rd |only man/account_send_phone_number_verification.Rd |only man/account_verify_phone_number.Rd |only man/acm.Rd | 29 man/acm_create_acme_domain_validation.Rd |only man/acm_create_acme_endpoint.Rd |only man/acm_create_acme_external_account_binding.Rd |only man/acm_delete_acme_domain_validation.Rd |only man/acm_delete_acme_endpoint.Rd |only man/acm_delete_acme_external_account_binding.Rd |only man/acm_describe_acme_account.Rd |only man/acm_describe_acme_domain_validation.Rd |only man/acm_describe_acme_endpoint.Rd |only man/acm_describe_acme_external_account_binding.Rd |only man/acm_get_acme_external_account_binding_credentials.Rd |only man/acm_list_acme_accounts.Rd |only man/acm_list_acme_domain_validations.Rd |only man/acm_list_acme_endpoints.Rd |only man/acm_list_acme_external_account_bindings.Rd |only man/acm_list_certificate_domain_validations.Rd |only man/acm_list_certificates.Rd | 3 man/acm_list_tags_for_resource.Rd |only man/acm_request_certificate.Rd | 4 man/acm_revoke_acme_account.Rd |only man/acm_revoke_acme_external_account_binding.Rd |only man/acm_tag_resource.Rd |only man/acm_untag_resource.Rd |only man/acm_update_acme_domain_validation.Rd |only man/acm_update_acme_endpoint.Rd |only man/acm_update_certificate_options.Rd | 6 man/acmpca.Rd | 4 man/acmpca_create_certificate_authority.Rd | 2 man/acmpca_update_certificate_authority.Rd | 2 man/cleanroomsml.Rd | 4 man/clouddirectory.Rd | 6 man/cloudhsm.Rd | 4 man/cloudhsmv2.Rd | 4 man/cognitoidentity.Rd | 4 man/cognitoidentityprovider.Rd | 14 man/cognitoidentityprovider_admin_delete_software_token.Rd |only man/cognitoidentityprovider_admin_get_user_auth_factors.Rd |only man/cognitoidentityprovider_admin_initiate_auth.Rd | 6 man/cognitoidentityprovider_admin_link_provider_for_user.Rd | 4 man/cognitoidentityprovider_create_identity_provider.Rd | 7 man/cognitoidentityprovider_create_user_import_job.Rd | 7 man/cognitoidentityprovider_create_user_pool.Rd | 25 man/cognitoidentityprovider_create_user_pool_client.Rd | 2 man/cognitoidentityprovider_create_user_pool_domain.Rd | 9 man/cognitoidentityprovider_create_user_pool_replica.Rd |only man/cognitoidentityprovider_delete_user_pool_replica.Rd |only man/cognitoidentityprovider_describe_terms_by_client.Rd |only man/cognitoidentityprovider_get_client_token.Rd |only man/cognitoidentityprovider_get_provisioned_limit.Rd |only man/cognitoidentityprovider_initiate_auth.Rd | 6 man/cognitoidentityprovider_list_user_pool_replicas.Rd |only man/cognitoidentityprovider_update_identity_provider.Rd | 7 man/cognitoidentityprovider_update_provisioned_limit.Rd |only man/cognitoidentityprovider_update_user_pool.Rd | 13 man/cognitoidentityprovider_update_user_pool_client.Rd | 2 man/cognitoidentityprovider_update_user_pool_domain.Rd | 5 man/cognitoidentityprovider_update_user_pool_replica.Rd |only man/cognitosync.Rd | 4 man/detective.Rd | 4 man/directoryservice.Rd | 4 man/fms.Rd | 4 man/guardduty.Rd | 19 man/guardduty_create_custom_detection_rule_association.Rd |only man/guardduty_create_custom_detection_rule_org_configuration.Rd |only man/guardduty_create_filter.Rd | 7 man/guardduty_create_investigation.Rd |only man/guardduty_delete_custom_detection_rule_association.Rd |only man/guardduty_delete_custom_detection_rule_org_configuration.Rd |only man/guardduty_get_custom_detection_rule.Rd |only man/guardduty_get_custom_detection_rule_association.Rd |only man/guardduty_get_custom_detection_rule_org_configuration.Rd |only man/guardduty_get_investigation.Rd |only man/guardduty_list_custom_detection_rule_associations.Rd |only man/guardduty_list_custom_detection_rule_org_configurations.Rd |only man/guardduty_list_custom_detection_rules.Rd |only man/guardduty_list_investigations.Rd |only man/guardduty_update_custom_detection_rule_association.Rd |only man/guardduty_update_custom_detection_rule_org_configuration.Rd |only man/guardduty_update_filter.Rd | 7 man/iam.Rd | 8 man/iam_acquire_role.Rd |only man/iam_create_service_specific_credential.Rd | 4 man/iam_get_account_properties.Rd |only man/iam_get_role_template_version.Rd |only man/iam_list_service_specific_credentials.Rd | 2 man/iam_put_account_properties.Rd |only man/iam_simulate_custom_policy.Rd | 11 man/iam_simulate_principal_policy.Rd | 13 man/iamrolesanywhere.Rd | 4 man/identitystore.Rd | 17 man/identitystore_create_group.Rd | 4 man/identitystore_create_group_membership.Rd | 8 man/identitystore_create_user.Rd | 4 man/identitystore_delete_group.Rd | 12 man/identitystore_delete_group_membership.Rd | 8 man/identitystore_delete_user.Rd | 12 man/identitystore_describe_group.Rd | 8 man/identitystore_describe_group_membership.Rd | 8 man/identitystore_describe_identity_store.Rd |only man/identitystore_describe_user.Rd | 8 man/identitystore_get_group_id.Rd | 4 man/identitystore_get_group_membership_id.Rd | 8 man/identitystore_get_user_id.Rd | 4 man/identitystore_is_member_in_groups.Rd | 8 man/identitystore_list_group_memberships.Rd | 10 man/identitystore_list_group_memberships_for_member.Rd | 8 man/identitystore_list_groups.Rd | 8 man/identitystore_list_identity_stores.Rd |only man/identitystore_list_users.Rd | 8 man/identitystore_update_group.Rd | 17 man/identitystore_update_identity_store.Rd |only man/identitystore_update_user.Rd | 12 man/inspector.Rd | 6 man/inspector2.Rd | 14 man/inspector2_create_connector.Rd |only man/inspector2_delete_connector.Rd |only man/inspector2_get_configuration.Rd | 9 man/inspector2_list_connector_scan_configurations.Rd |only man/inspector2_list_connectors.Rd |only man/inspector2_update_configuration.Rd | 12 man/inspector2_update_connector.Rd |only man/inspector2_update_connector_scan_configuration.Rd |only man/inspector_create_assessment_target.Rd | 2 man/inspector_create_assessment_template.Rd | 2 man/inspector_get_assessment_report.Rd | 2 man/inspector_list_assessment_targets.Rd | 2 man/kms.Rd | 4 man/kms_derive_shared_secret.Rd | 2 man/macie2.Rd | 4 man/pcaconnectorad.Rd | 4 man/ram.Rd | 4 man/secretsmanager.Rd | 4 man/securityhub.Rd | 14 man/securityhub_create_connector.Rd |only man/securityhub_delete_connector.Rd |only man/securityhub_describe_standards.Rd | 8 man/securityhub_disable_security_hub_feature_v2.Rd |only man/securityhub_disable_security_hub_v2.Rd | 2 man/securityhub_enable_security_hub_feature_v2.Rd |only man/securityhub_get_connector.Rd |only man/securityhub_get_enabled_standards.Rd | 5 man/securityhub_get_remediations_v2.Rd |only man/securityhub_list_connectors.Rd |only man/securityhub_list_connectors_v2.Rd | 5 man/securityhub_list_exposures_by_remediation_v2.Rd |only man/securityhub_list_free_trial_statuses_v2.Rd |only man/securityhub_list_security_control_definitions.Rd | 5 man/securityhub_update_connector.Rd |only man/securitylake.Rd | 4 man/shield.Rd | 4 man/sso.Rd | 4 man/ssoadmin.Rd | 4 man/ssoadmin_update_instance.Rd | 7 man/ssooidc.Rd | 6 man/sts.Rd | 12 man/sts_assume_role.Rd | 5 man/sts_assume_role_with_saml.Rd | 5 man/sts_assume_role_with_web_identity.Rd | 5 man/sts_assume_root.Rd | 9 man/sts_get_federation_token.Rd | 5 man/sts_get_session_token.Rd | 5 man/verifiedpermissions.Rd | 4 man/waf.Rd | 4 man/wafregional.Rd | 4 man/wafv2.Rd | 8 man/wafv2_associate_web_acl.Rd | 1 man/wafv2_create_rule_group.Rd | 5 man/wafv2_create_web_acl.Rd | 5 man/wafv2_disassociate_web_acl.Rd | 1 man/wafv2_get_revenue_statistics.Rd |only man/wafv2_get_revenue_statistics_summary.Rd |only man/wafv2_get_revenue_statistics_time_series.Rd |only man/wafv2_get_web_acl_for_resource.Rd | 1 man/wafv2_list_settlement_records.Rd |only man/wafv2_update_rule_group.Rd | 5 man/wafv2_update_web_acl.Rd | 5 tests/testthat.R |only tests/testthat/test_accessanalyzer.R | 4 tests/testthat/test_account.R | 4 tests/testthat/test_acm.R | 13 tests/testthat/test_acmpca.R | 4 tests/testthat/test_cleanroomsml.R | 8 tests/testthat/test_clouddirectory.R | 10 tests/testthat/test_cloudhsm.R | 2 tests/testthat/test_cloudhsmv2.R | 6 tests/testthat/test_cognitoidentity.R | 2 tests/testthat/test_cognitoidentityprovider.R | 2 tests/testthat/test_cognitosync.R | 4 tests/testthat/test_detective.R | 8 tests/testthat/test_directoryservice.R | 8 tests/testthat/test_fms.R | 2 tests/testthat/test_guardduty.R | 41 tests/testthat/test_iam.R | 19 tests/testthat/test_iamrolesanywhere.R | 6 tests/testthat/test_identitystore.R | 10 tests/testthat/test_inspector.R | 9 tests/testthat/test_inspector2.R | 25 tests/testthat/test_kms.R | 6 tests/testthat/test_macie2.R | 16 tests/testthat/test_pcaconnectorad.R | 6 tests/testthat/test_ram.R | 7 tests/testthat/test_secretsmanager.R | 4 tests/testthat/test_securityhub.R | 57 tests/testthat/test_securitylake.R | 6 tests/testthat/test_shield.R | 7 tests/testthat/test_sso.R | 2 tests/testthat/test_ssoadmin.R | 6 tests/testthat/test_ssooidc.R | 2 tests/testthat/test_sts.R | 2 tests/testthat/test_verifiedpermissions.R | 4 tests/testthat/test_waf.R | 15 tests/testthat/test_wafregional.R | 15 tests/testthat/test_wafv2.R | 2 331 files changed, 11874 insertions(+), 8867 deletions(-)
More information about paws.security.identity at CRAN
Permanent link
Title: 'Amazon Web Services' Machine Learning Services
Description: Interface to 'Amazon Web Services' machine learning services,
including 'SageMaker' managed machine learning service, natural
language processing, speech recognition, translation, and more
<https://aws.amazon.com/machine-learning/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.machine.learning versions 0.10.0 dated 2026-05-30 and 0.11.0 dated 2026-10-08
paws.machine.learning-0.10.0/paws.machine.learning/R/panorama_interfaces.R |only paws.machine.learning-0.10.0/paws.machine.learning/R/panorama_operations.R |only paws.machine.learning-0.10.0/paws.machine.learning/R/panorama_service.R |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_create_application_instance.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_create_job_for_devices.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_create_node_from_template_job.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_create_package.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_create_package_import_job.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_delete_device.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_delete_package.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_deregister_package_version.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_describe_application_instance.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_describe_application_instance_details.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_describe_device.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_describe_device_job.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_describe_node.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_describe_node_from_template_job.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_describe_package.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_describe_package_import_job.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_describe_package_version.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_list_application_instance_dependencies.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_list_application_instance_node_instances.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_list_application_instances.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_list_devices.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_list_devices_jobs.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_list_node_from_template_jobs.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_list_nodes.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_list_package_import_jobs.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_list_packages.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_list_tags_for_resource.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_provision_device.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_register_package_version.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_remove_application_instance.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_signal_application_instance_node_instances.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_tag_resource.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_untag_resource.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/man/panorama_update_device_metadata.Rd |only paws.machine.learning-0.10.0/paws.machine.learning/tests/testthat/test_panorama.R |only paws.machine.learning-0.11.0/paws.machine.learning/DESCRIPTION | 18 paws.machine.learning-0.11.0/paws.machine.learning/MD5 | 643 +- paws.machine.learning-0.11.0/paws.machine.learning/NAMESPACE | 37 paws.machine.learning-0.11.0/paws.machine.learning/R/augmentedairuntime_interfaces.R | 30 paws.machine.learning-0.11.0/paws.machine.learning/R/augmentedairuntime_operations.R | 15 paws.machine.learning-0.11.0/paws.machine.learning/R/augmentedairuntime_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrock_interfaces.R | 656 +- paws.machine.learning-0.11.0/paws.machine.learning/R/bedrock_operations.R | 443 + paws.machine.learning-0.11.0/paws.machine.learning/R/bedrock_service.R | 16 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagent_interfaces.R | 502 -- paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagent_operations.R | 500 +- paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagent_service.R | 15 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagentcore_interfaces.R | 410 - paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagentcore_operations.R | 338 + paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagentcore_service.R | 6 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagentcorecontrol_interfaces.R | 1122 ++-- paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagentcorecontrol_operations.R | 1506 +++++- paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagentcorecontrol_service.R | 48 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagentruntime_interfaces.R | 226 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagentruntime_operations.R | 260 - paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockagentruntime_service.R | 14 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockdataautomation_interfaces.R | 162 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockdataautomation_operations.R | 81 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockdataautomation_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockdataautomationruntime_interfaces.R | 36 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockdataautomationruntime_operations.R | 18 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockdataautomationruntime_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockruntime_interfaces.R | 70 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockruntime_operations.R | 63 paws.machine.learning-0.11.0/paws.machine.learning/R/bedrockruntime_service.R | 5 paws.machine.learning-0.11.0/paws.machine.learning/R/comprehend_interfaces.R | 510 -- paws.machine.learning-0.11.0/paws.machine.learning/R/comprehend_operations.R | 255 - paws.machine.learning-0.11.0/paws.machine.learning/R/comprehend_service.R | 6 paws.machine.learning-0.11.0/paws.machine.learning/R/comprehendmedical_interfaces.R | 156 paws.machine.learning-0.11.0/paws.machine.learning/R/comprehendmedical_operations.R | 78 paws.machine.learning-0.11.0/paws.machine.learning/R/comprehendmedical_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/forecastqueryservice_interfaces.R | 12 paws.machine.learning-0.11.0/paws.machine.learning/R/forecastqueryservice_operations.R | 6 paws.machine.learning-0.11.0/paws.machine.learning/R/forecastqueryservice_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/forecastservice_interfaces.R | 330 - paws.machine.learning-0.11.0/paws.machine.learning/R/forecastservice_operations.R | 189 paws.machine.learning-0.11.0/paws.machine.learning/R/forecastservice_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/frauddetector_interfaces.R | 435 - paws.machine.learning-0.11.0/paws.machine.learning/R/frauddetector_operations.R | 219 paws.machine.learning-0.11.0/paws.machine.learning/R/frauddetector_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/lexmodelbuildingservice_interfaces.R | 225 paws.machine.learning-0.11.0/paws.machine.learning/R/lexmodelbuildingservice_operations.R | 126 paws.machine.learning-0.11.0/paws.machine.learning/R/lexmodelbuildingservice_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/lexmodelsv2_interfaces.R | 630 -- paws.machine.learning-0.11.0/paws.machine.learning/R/lexmodelsv2_operations.R | 333 - paws.machine.learning-0.11.0/paws.machine.learning/R/lexmodelsv2_service.R | 32 paws.machine.learning-0.11.0/paws.machine.learning/R/lexruntimeservice_interfaces.R | 30 paws.machine.learning-0.11.0/paws.machine.learning/R/lexruntimeservice_operations.R | 15 paws.machine.learning-0.11.0/paws.machine.learning/R/lexruntimeservice_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/lexruntimev2_interfaces.R | 36 paws.machine.learning-0.11.0/paws.machine.learning/R/lexruntimev2_operations.R | 18 paws.machine.learning-0.11.0/paws.machine.learning/R/lexruntimev2_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/lookoutequipment_interfaces.R | 261 - paws.machine.learning-0.11.0/paws.machine.learning/R/lookoutequipment_operations.R | 147 paws.machine.learning-0.11.0/paws.machine.learning/R/lookoutequipment_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/machinelearning_interfaces.R | 168 paws.machine.learning-0.11.0/paws.machine.learning/R/machinelearning_operations.R | 84 paws.machine.learning-0.11.0/paws.machine.learning/R/machinelearning_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/personalize_interfaces.R | 396 - paws.machine.learning-0.11.0/paws.machine.learning/R/personalize_operations.R | 213 paws.machine.learning-0.11.0/paws.machine.learning/R/personalize_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/personalizeevents_interfaces.R | 15 paws.machine.learning-0.11.0/paws.machine.learning/R/personalizeevents_operations.R | 15 paws.machine.learning-0.11.0/paws.machine.learning/R/personalizeevents_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/personalizeruntime_interfaces.R | 18 paws.machine.learning-0.11.0/paws.machine.learning/R/personalizeruntime_operations.R | 9 paws.machine.learning-0.11.0/paws.machine.learning/R/personalizeruntime_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/polly_interfaces.R | 60 paws.machine.learning-0.11.0/paws.machine.learning/R/polly_operations.R | 30 paws.machine.learning-0.11.0/paws.machine.learning/R/polly_service.R | 6 paws.machine.learning-0.11.0/paws.machine.learning/R/rekognition_interfaces.R | 450 - paws.machine.learning-0.11.0/paws.machine.learning/R/rekognition_operations.R | 279 - paws.machine.learning-0.11.0/paws.machine.learning/R/rekognition_service.R | 50 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemaker_interfaces.R | 2270 +++------- paws.machine.learning-0.11.0/paws.machine.learning/R/sagemaker_operations.R | 1538 ++++-- paws.machine.learning-0.11.0/paws.machine.learning/R/sagemaker_service.R | 12 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakeredgemanager_interfaces.R | 15 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakeredgemanager_operations.R | 9 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakeredgemanager_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakerfeaturestoreruntime_interfaces.R | 47 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakerfeaturestoreruntime_operations.R | 122 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakerfeaturestoreruntime_service.R | 9 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakergeospatialcapabilities_interfaces.R | 114 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakergeospatialcapabilities_operations.R | 57 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakergeospatialcapabilities_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakermetrics_interfaces.R | 12 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakermetrics_operations.R | 6 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakermetrics_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakerruntime_interfaces.R | 18 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakerruntime_operations.R | 34 paws.machine.learning-0.11.0/paws.machine.learning/R/sagemakerruntime_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/R/sysdata.rda |only paws.machine.learning-0.11.0/paws.machine.learning/R/textract_interfaces.R | 150 paws.machine.learning-0.11.0/paws.machine.learning/R/textract_operations.R | 77 paws.machine.learning-0.11.0/paws.machine.learning/R/textract_service.R | 6 paws.machine.learning-0.11.0/paws.machine.learning/R/transcribeservice_interfaces.R | 247 - paws.machine.learning-0.11.0/paws.machine.learning/R/transcribeservice_operations.R | 201 paws.machine.learning-0.11.0/paws.machine.learning/R/transcribeservice_service.R | 7 paws.machine.learning-0.11.0/paws.machine.learning/R/translate_interfaces.R | 111 paws.machine.learning-0.11.0/paws.machine.learning/R/translate_operations.R | 57 paws.machine.learning-0.11.0/paws.machine.learning/R/translate_service.R | 6 paws.machine.learning-0.11.0/paws.machine.learning/R/voiceid_interfaces.R | 162 paws.machine.learning-0.11.0/paws.machine.learning/R/voiceid_operations.R | 87 paws.machine.learning-0.11.0/paws.machine.learning/R/voiceid_service.R | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/augmentedairuntime.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrock.Rd | 16 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrock_batch_delete_advanced_prompt_optimization_job.Rd | 6 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrock_create_advanced_prompt_optimization_job.Rd | 20 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrock_create_custom_model.Rd | 13 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrock_get_account_data_retention.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrock_get_advanced_prompt_optimization_job.Rd | 6 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrock_list_advanced_prompt_optimization_jobs.Rd | 12 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrock_put_account_data_retention.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrock_stop_advanced_prompt_optimization_job.Rd | 6 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent.Rd | 15 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_create_agent.Rd | 7 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_create_data_source.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_create_vpc_configuration.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_delete_resource_policy.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_delete_vpc_configuration.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_get_flow.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_get_flow_version.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_get_prompt.Rd | 8 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_get_resource_policy.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_get_vpc_configuration.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_list_vpc_configurations.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagent_put_resource_policy.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore.Rd | 6 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_create_ab_test.Rd | 5 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_create_event.Rd | 10 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_delete_capacity_provider_session.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_delete_memory_record.Rd | 8 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_get_memory_record.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_ingest_data.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_invoke_agent_runtime.Rd | 11 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_invoke_harness.Rd | 18 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_start_batch_evaluation.Rd | 14 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_start_browser_session.Rd | 3 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_start_code_interpreter_session.Rd | 3 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcore_start_recommendation.Rd | 8 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol.Rd | 48 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_add_dataset_examples.Rd | 2 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_batch_put_gateway_rate_limits.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_agent_runtime.Rd | 12 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_api_key_credential_provider.Rd | 10 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_browser.Rd | 3 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_capacity_provider.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_code_interpreter.Rd | 3 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_configuration_bundle.Rd | 3 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_consent_portal.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_dataset.Rd | 10 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_dataset_version.Rd | 2 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_gateway_rate_limit.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_gateway_target.Rd | 9 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_harness.Rd | 7 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_harness_endpoint.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_memory.Rd | 3 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_online_evaluation_config.Rd | 13 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_payment_connector.Rd | 7 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_payment_manager.Rd | 5 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_create_policy.Rd | 7 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_delete_agent_runtime.Rd | 8 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_delete_agent_runtime_endpoint.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_delete_capacity_provider.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_delete_consent_portal.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_delete_dataset.Rd | 7 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_delete_dataset_examples.Rd | 2 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_delete_gateway_rate_limit.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_delete_harness.Rd | 8 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_delete_harness_endpoint.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_delete_memory.Rd | 2 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_get_capacity_provider.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_get_consent_portal.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_get_dataset.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_get_gateway_rate_limit.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_get_harness.Rd | 8 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_get_harness_endpoint.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_get_policy_generation.Rd | 2 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_list_agen_runt_vers_by_capa_prov.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_list_capacity_providers.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_list_consent_portals.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_list_dataset_examples.Rd | 6 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_list_datasets.Rd | 2 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_list_gateway_rate_limits.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_list_harness_endpoints.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_list_harness_versions.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_list_harnesses.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_list_policy_generation_assets.Rd | 2 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_rotate_payment_connector_credentials.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_start_policy_generation.Rd | 6 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_agent_runtime.Rd | 10 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_api_key_credential_provider.Rd | 13 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_capacity_provider.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_configuration_bundle.Rd | 13 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_consent_portal.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_dataset.Rd | 2 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_dataset_examples.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_gateway.Rd | 8 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_gateway_rate_limit.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_gateway_target.Rd | 9 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_harness.Rd | 7 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_harness_endpoint.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_memory.Rd | 3 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_online_evaluation_config.Rd | 9 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_payment_manager.Rd | 5 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentcorecontrol_update_policy.Rd | 7 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentruntime.Rd | 14 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentruntime_agentic_retrieve_stream.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentruntime_check_ingested_document_acl.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentruntime_get_document_content.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentruntime_get_ingested_document_acl.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentruntime_invoke_agent.Rd | 5 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentruntime_retrieve.Rd | 5 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentruntime_retrieve_and_generate.Rd | 5 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockagentruntime_retrieve_and_generate_stream.Rd | 5 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockdataautomation.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockdataautomationruntime.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockruntime.Rd | 5 paws.machine.learning-0.11.0/paws.machine.learning/man/bedrockruntime_invoke_guardrail_checks.Rd |only paws.machine.learning-0.11.0/paws.machine.learning/man/comprehend.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/comprehendmedical.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/forecastqueryservice.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/forecastservice.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/frauddetector.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/lexmodelbuildingservice.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/lexmodelsv2.Rd | 33 paws.machine.learning-0.11.0/paws.machine.learning/man/lexmodelsv2_create_bot_locale.Rd | 5 paws.machine.learning-0.11.0/paws.machine.learning/man/lexmodelsv2_create_resource_policy_statement.Rd | 2 paws.machine.learning-0.11.0/paws.machine.learning/man/lexmodelsv2_update_bot_locale.Rd | 5 paws.machine.learning-0.11.0/paws.machine.learning/man/lexruntimeservice.Rd | 4 paws.machine.learning-0.11.0/paws.machine.learning/man/lexruntimev2.Rd | 4 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More information about paws.machine.learning at CRAN
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Title: Latent Variable Analysis
Description: Fit a variety of latent variable models, including confirmatory
factor analysis, structural equation modeling and latent growth curve models.
Author: Yves Rosseel [aut, cre] ,
Terrence D. Jorgensen [aut] ,
Luc De Wilde [aut],
Daniel Oberski [ctb],
Jarrett Byrnes [ctb],
Leonard Vanbrabant [ctb],
Victoria Savalei [ctb],
Ed Merkle [ctb],
Michael Hallquist [ctb],
Mijke Rhemtulla [ctb],
Myrsini Katsika [...truncated...]
Maintainer: Yves Rosseel <Yves.Rosseel@UGent.be>
Diff between lavaan versions 0.7-2 dated 2026-07-16 and 0.7-3 dated 2026-10-08
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lavaan-0.7-3/lavaan/R/lav_model_vcov.R | 253 +- lavaan-0.7-3/lavaan/R/lav_model_wls.R | 25 lavaan-0.7-3/lavaan/R/lav_modification.R | 2 lavaan-0.7-3/lavaan/R/lav_msg.R | 12 lavaan-0.7-3/lavaan/R/lav_muthen1984.R | 234 + lavaan-0.7-3/lavaan/R/lav_mvnorm_cluster.R | 270 +- lavaan-0.7-3/lavaan/R/lav_mvnorm_cluster_kernels.R | 54 lavaan-0.7-3/lavaan/R/lav_mvnorm_cluster_missing.R | 74 lavaan-0.7-3/lavaan/R/lav_mvnorm_cluster_missing_louis.R | 24 lavaan-0.7-3/lavaan/R/lav_mvnorm_cluster_rs.R | 72 lavaan-0.7-3/lavaan/R/lav_mvnorm_missing_h1.R | 4 lavaan-0.7-3/lavaan/R/lav_mvreg_cluster.R | 88 lavaan-0.7-3/lavaan/R/lav_object_check_version.R | 24 lavaan-0.7-3/lavaan/R/lav_object_generate.R | 16 lavaan-0.7-3/lavaan/R/lav_object_inspect.R | 221 + lavaan-0.7-3/lavaan/R/lav_object_inspect_constraints.R |only lavaan-0.7-3/lavaan/R/lav_object_inspect_sampstat.R |only lavaan-0.7-3/lavaan/R/lav_object_methods.R | 94 lavaan-0.7-3/lavaan/R/lav_object_post_check.R | 94 lavaan-0.7-3/lavaan/R/lav_object_summary.R | 27 lavaan-0.7-3/lavaan/R/lav_objective.R | 4 lavaan-0.7-3/lavaan/R/lav_optim_gn.R | 14 lavaan-0.7-3/lavaan/R/lav_optim_noniter.R | 39 lavaan-0.7-3/lavaan/R/lav_optim_noniter_vcov.R |only lavaan-0.7-3/lavaan/R/lav_options.R | 354 ++ lavaan-0.7-3/lavaan/R/lav_options_default.R | 36 lavaan-0.7-3/lavaan/R/lav_options_estimator.R | 589 ++++ lavaan-0.7-3/lavaan/R/lav_options_mimic.R | 22 lavaan-0.7-3/lavaan/R/lav_options_se.R | 14 lavaan-0.7-3/lavaan/R/lav_partable.R | 82 lavaan-0.7-3/lavaan/R/lav_partable_bounds.R | 102 lavaan-0.7-3/lavaan/R/lav_partable_constraints.R | 13 lavaan-0.7-3/lavaan/R/lav_partable_dv.R |only lavaan-0.7-3/lavaan/R/lav_partable_flat.R | 26 lavaan-0.7-3/lavaan/R/lav_partable_marker.R | 184 + lavaan-0.7-3/lavaan/R/lav_partable_random.R | 8 lavaan-0.7-3/lavaan/R/lav_partable_unrestricted.R | 15 lavaan-0.7-3/lavaan/R/lav_partable_utils.R | 54 lavaan-0.7-3/lavaan/R/lav_partable_vnames.R | 6 lavaan-0.7-3/lavaan/R/lav_pml_utils.R | 7 lavaan-0.7-3/lavaan/R/lav_predict.R | 251 +- lavaan-0.7-3/lavaan/R/lav_predict_mdist.R | 4 lavaan-0.7-3/lavaan/R/lav_predict_y.R | 12 lavaan-0.7-3/lavaan/R/lav_print.R | 290 +- lavaan-0.7-3/lavaan/R/lav_representation_lisrel.R | 331 ++ lavaan-0.7-3/lavaan/R/lav_representation_ram.R | 33 lavaan-0.7-3/lavaan/R/lav_rescale.R |only lavaan-0.7-3/lavaan/R/lav_residuals.R | 27 lavaan-0.7-3/lavaan/R/lav_sam_step0.R | 132 - lavaan-0.7-3/lavaan/R/lav_sam_step1.R | 96 lavaan-0.7-3/lavaan/R/lav_sam_step1_local.R | 737 +++++- lavaan-0.7-3/lavaan/R/lav_sam_step2.R | 195 + lavaan-0.7-3/lavaan/R/lav_sam_step2_se.R | 124 - lavaan-0.7-3/lavaan/R/lav_sam_utils.R | 855 ++++++- lavaan-0.7-3/lavaan/R/lav_samplestats.R | 449 +++ lavaan-0.7-3/lavaan/R/lav_samplestats_gamma.R | 604 +++-- lavaan-0.7-3/lavaan/R/lav_samplestats_gamma_recipe.R | 26 lavaan-0.7-3/lavaan/R/lav_samplestats_icov.R | 4 lavaan-0.7-3/lavaan/R/lav_samplestats_igamma.R | 6 lavaan-0.7-3/lavaan/R/lav_samplestats_wls_2l_cat.R | 4 lavaan-0.7-3/lavaan/R/lav_samplestats_wls_obs.R | 20 lavaan-0.7-3/lavaan/R/lav_scores.R | 2 lavaan-0.7-3/lavaan/R/lav_sem_js.R |only lavaan-0.7-3/lavaan/R/lav_sem_js_deriv.R |only lavaan-0.7-3/lavaan/R/lav_sem_miiv.R | 587 ++++ lavaan-0.7-3/lavaan/R/lav_sem_miiv_utils.R | 518 ++++ lavaan-0.7-3/lavaan/R/lav_standardize.R | 6 lavaan-0.7-3/lavaan/R/lav_start.R | 111 lavaan-0.7-3/lavaan/R/lav_syntax.R | 17 lavaan-0.7-3/lavaan/R/lav_syntax_parser.R | 29 lavaan-0.7-3/lavaan/R/lav_syntax_parser_open.R | 48 lavaan-0.7-3/lavaan/R/lav_test.R | 65 lavaan-0.7-3/lavaan/R/lav_test_LRT.R | 224 + lavaan-0.7-3/lavaan/R/lav_test_browne.R | 120 - lavaan-0.7-3/lavaan/R/lav_test_fmg.R | 4 lavaan-0.7-3/lavaan/R/lav_test_hayakawa.R | 88 lavaan-0.7-3/lavaan/R/lav_test_net.R |only lavaan-0.7-3/lavaan/R/lav_test_satorra_bentler.R | 34 lavaan-0.7-3/lavaan/R/lav_test_utils.R | 37 lavaan-0.7-3/lavaan/R/lav_test_yuan_bentler.R | 11 lavaan-0.7-3/lavaan/R/lav_utils.R | 92 lavaan-0.7-3/lavaan/R/lav_vcov_hc.R |only lavaan-0.7-3/lavaan/R/xxx_efa.R | 9 lavaan-0.7-3/lavaan/R/xxx_lavaan.R | 206 + lavaan-0.7-3/lavaan/R/xxx_sam.R | 340 ++ lavaan-0.7-3/lavaan/README.md | 14 lavaan-0.7-3/lavaan/inst/rbm_sem.R | 4 lavaan-0.7-3/lavaan/inst/understanding_lavaan_internals.R | 2 lavaan-0.7-3/lavaan/man/bootstrap.Rd | 2 lavaan-0.7-3/lavaan/man/cfa.Rd | 18 lavaan-0.7-3/lavaan/man/efa.Rd | 14 lavaan-0.7-3/lavaan/man/estimator_iv.Rd | 79 lavaan-0.7-3/lavaan/man/estimator_js.Rd |only lavaan-0.7-3/lavaan/man/fitMeasures.Rd | 102 lavaan-0.7-3/lavaan/man/growth.Rd | 16 lavaan-0.7-3/lavaan/man/lavEffects.Rd | 8 lavaan-0.7-3/lavaan/man/lavH1.Rd |only lavaan-0.7-3/lavaan/man/lavInspect.Rd | 421 ++- lavaan-0.7-3/lavaan/man/lavListInspect.Rd | 12 lavaan-0.7-3/lavaan/man/lavNames.Rd | 43 lavaan-0.7-3/lavaan/man/lavOptions.Rd | 515 +++- lavaan-0.7-3/lavaan/man/lavPredict.Rd | 29 lavaan-0.7-3/lavaan/man/lavResiduals.Rd | 15 lavaan-0.7-3/lavaan/man/lavTestLRT.Rd | 69 lavaan-0.7-3/lavaan/man/lavTestNET.Rd |only lavaan-0.7-3/lavaan/man/lav_constraints.Rd | 8 lavaan-0.7-3/lavaan/man/lav_export_estimation.Rd | 4 lavaan-0.7-3/lavaan/man/lav_partable.Rd | 6 lavaan-0.7-3/lavaan/man/lav_scores.Rd | 2 lavaan-0.7-3/lavaan/man/lavaan-class.Rd | 14 lavaan-0.7-3/lavaan/man/lavaan.Rd | 8 lavaan-0.7-3/lavaan/man/mimic.Rd | 59 lavaan-0.7-3/lavaan/man/model.syntax.Rd | 82 lavaan-0.7-3/lavaan/man/parameterEstimates.Rd | 16 lavaan-0.7-3/lavaan/man/sam.Rd | 163 + lavaan-0.7-3/lavaan/man/sem.Rd | 18 lavaan-0.7-3/lavaan/man/simulateData.Rd | 19 lavaan-0.7-3/lavaan/man/standardizedSolution.Rd | 22 168 files changed, 13012 insertions(+), 3096 deletions(-)
More information about KeyNubLicDongle at CRAN
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Title: Predicting Invasion Probabilities from Phylogenetic Data and
Species Traits
Description: A phylogenetic modelling approach for predicting species invasion risk, out of
a given pool of local species where a subset is known to be invasive elsewhere.
The package uses phylogenetic signal estimation and phylogenetic linear and logistic models
to estimate probabilities of being invasive based on phylogeny and any set of additional
predictors. A ranking method is implemented to evaluate prioritisation strategies. A manuscript
describing these methods, by Shahar Dubiner and Tamar Guy-Haim, is in preparation.
Author: Shahar Dubiner [aut, cre]
Maintainer: Shahar Dubiner <dubiner@mail.tau.ac.il>
Diff between invasible versions 0.1.1 dated 2026-08-05 and 1.0.0 dated 2026-10-08
DESCRIPTION | 6 MD5 | 14 - R/globals.R | 3 R/invasion_signal.R | 154 +++++++-------- R/predict_invasible.R | 355 ++++++++++++++++++----------------- R/prepare_invasible.R | 465 +++++++++++++++++++++++++++++++++++++++-------- man/predict_invasible.Rd | 8 man/prepare_invasible.Rd | 56 ++++- 8 files changed, 705 insertions(+), 356 deletions(-)
Title: The Gauss Hypergeometric Function
Description: The Gaussian hypergeometric function for complex numbers.
Author: Robin K. S. Hankin [aut, cre] ,
Richard D. Morey [ctb]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between hypergeo versions 1.2-14 dated 2025-03-24 and 1.2-15 dated 2026-10-08
hypergeo-1.2-14/hypergeo/inst/doc/hypergeometric.R |only hypergeo-1.2-14/hypergeo/inst/doc/hypergeometric.Rnw |only hypergeo-1.2-14/hypergeo/inst/doc/hypergeometric.pdf |only hypergeo-1.2-14/hypergeo/tests/aaa.R |only hypergeo-1.2-14/hypergeo/tests/aab.R |only hypergeo-1.2-14/hypergeo/vignettes/hypergeometric.Rnw |only hypergeo-1.2-15/hypergeo/DESCRIPTION | 28 +++-- hypergeo-1.2-15/hypergeo/MD5 | 77 ++++++++----- hypergeo-1.2-15/hypergeo/NAMESPACE | 5 hypergeo-1.2-15/hypergeo/NEWS.md |only hypergeo-1.2-15/hypergeo/R/RcppExports.R |only hypergeo-1.2-15/hypergeo/R/complex_gamma.R | 47 ++------ hypergeo-1.2-15/hypergeo/R/hypergeo.R | 100 +++++++----------- hypergeo-1.2-15/hypergeo/README.md |only hypergeo-1.2-15/hypergeo/build/partial.rdb |only hypergeo-1.2-15/hypergeo/build/vignette.rds |binary hypergeo-1.2-15/hypergeo/inst/CITATION |only hypergeo-1.2-15/hypergeo/inst/doc/hypergeo.R |only hypergeo-1.2-15/hypergeo/inst/doc/hypergeo.Rnw |only hypergeo-1.2-15/hypergeo/inst/doc/hypergeo.pdf |only hypergeo-1.2-15/hypergeo/inst/include |only hypergeo-1.2-15/hypergeo/man/buhring.Rd | 2 hypergeo-1.2-15/hypergeo/man/complex_gamma.Rd | 12 +- hypergeo-1.2-15/hypergeo/man/cpp.Rd |only hypergeo-1.2-15/hypergeo/man/f15.1.20.Rd |only hypergeo-1.2-15/hypergeo/man/f15.3.1.Rd | 10 + hypergeo-1.2-15/hypergeo/man/f15.3.3.Rd | 7 + hypergeo-1.2-15/hypergeo/man/f15.5.1.Rd | 2 hypergeo-1.2-15/hypergeo/man/figures |only hypergeo-1.2-15/hypergeo/man/genhypergeo.Rd | 14 ++ hypergeo-1.2-15/hypergeo/man/gosper.Rd | 2 hypergeo-1.2-15/hypergeo/man/hypergeo-package.Rd | 40 +++---- hypergeo-1.2-15/hypergeo/man/hypergeo.Rd | 2 hypergeo-1.2-15/hypergeo/man/hypergeo_A_nonpos_int.Rd | 6 - hypergeo-1.2-15/hypergeo/man/hypergeo_contfrac.Rd | 2 hypergeo-1.2-15/hypergeo/man/hypergeo_cover1.Rd | 8 - hypergeo-1.2-15/hypergeo/man/hypergeo_powerseries.Rd | 5 hypergeo-1.2-15/hypergeo/man/is.nonpos.Rd | 7 - hypergeo-1.2-15/hypergeo/man/residue.Rd | 10 - hypergeo-1.2-15/hypergeo/man/wolfram.Rd | 6 - hypergeo-1.2-15/hypergeo/src |only hypergeo-1.2-15/hypergeo/tests/testthat |only hypergeo-1.2-15/hypergeo/tests/testthat.R |only hypergeo-1.2-15/hypergeo/vignettes/hypergeo.Rnw |only hypergeo-1.2-15/hypergeo/vignettes/hypergeometric.bib | 29 ++++- 45 files changed, 232 insertions(+), 189 deletions(-)
More information about heterogeneouspeereffects at CRAN
Permanent link
Title: Grammar of Graphics for SQL
Description: Allows you to write queries that combine SQL (Structured Query
Language) data retrieval with visualization specifications in a single,
composable syntax. The 'ggsql' package binds directly with the 'ggsql' 'Rust'
library and allows you to set up readers and writers and execute queries
against it. The package also offers 'knitr' and 'shiny' integration allowing
the user to use 'ggsql' in both frameworks.
Author: Thomas Lin Pedersen [aut, cre] ,
George Stagg [aut] ,
Teun van den Brand [aut] ,
Posit, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ggsql versions 0.3.3 dated 2026-06-03 and 0.5.2 dated 2026-10-08
ggsql-0.3.3/ggsql/R/vega-versions.R |only ggsql-0.3.3/ggsql/inst/htmlwidgets/ggsql_vega.css |only ggsql-0.3.3/ggsql/inst/htmlwidgets/ggsql_vega.js |only ggsql-0.3.3/ggsql/inst/htmlwidgets/lib/vega |only ggsql-0.3.3/ggsql/inst/htmlwidgets/lib/vega-embed |only ggsql-0.3.3/ggsql/inst/htmlwidgets/lib/vega-lite |only ggsql-0.3.3/ggsql/src/rust/vendor.tar.xz.sha256 |only ggsql-0.5.2/ggsql/DESCRIPTION | 12 ggsql-0.5.2/ggsql/MD5 | 78 ggsql-0.5.2/ggsql/NAMESPACE | 5 ggsql-0.5.2/ggsql/NEWS.md | 29 ggsql-0.5.2/ggsql/R/aaa.R | 1 ggsql-0.5.2/ggsql/R/engine.R | 43 ggsql-0.5.2/ggsql/R/extendr-wrappers.R | 8 ggsql-0.5.2/ggsql/R/hep-version.R |only ggsql-0.5.2/ggsql/R/render.R | 140 - ggsql-0.5.2/ggsql/R/shiny.R | 8 ggsql-0.5.2/ggsql/R/spec.R | 17 ggsql-0.5.2/ggsql/R/widget.R | 77 ggsql-0.5.2/ggsql/R/writer.R | 94 - ggsql-0.5.2/ggsql/R/zzz.R | 8 ggsql-0.5.2/ggsql/README.md | 28 ggsql-0.5.2/ggsql/inst/doc/engine.html | 1207 +++++++++---- ggsql-0.5.2/ggsql/inst/doc/ggsql.html | 1205 +++++++++--- ggsql-0.5.2/ggsql/inst/htmlwidgets/ggsql_hep.js |only ggsql-0.5.2/ggsql/inst/htmlwidgets/lib/hephaestus-svg |only ggsql-0.5.2/ggsql/man/figures/README-unnamed-chunk-2-1.svg | 2 ggsql-0.5.2/ggsql/man/figures/README-unnamed-chunk-3-1.svg | 2 ggsql-0.5.2/ggsql/man/figures/README-unnamed-chunk-4-1.svg |only ggsql-0.5.2/ggsql/man/ggsql_render.Rd | 11 ggsql-0.5.2/ggsql/man/ggsql_save.Rd | 19 ggsql-0.5.2/ggsql/man/ggsql_widget.Rd |only ggsql-0.5.2/ggsql/man/svg_writer.Rd |only ggsql-0.5.2/ggsql/man/vegalite_writer.Rd | 10 ggsql-0.5.2/ggsql/src/Makevars.win.in | 4 ggsql-0.5.2/ggsql/src/rust/Cargo.lock | 692 ++++++- ggsql-0.5.2/ggsql/src/rust/Cargo.toml | 8 ggsql-0.5.2/ggsql/src/rust/build-env-win.sh | 3 ggsql-0.5.2/ggsql/src/rust/src/lib.rs | 75 ggsql-0.5.2/ggsql/tests/testthat/test-engine.R | 77 ggsql-0.5.2/ggsql/tests/testthat/test-spec.R | 27 ggsql-0.5.2/ggsql/tests/testthat/test-validate.R | 2 ggsql-0.5.2/ggsql/tests/testthat/test-writer.R | 81 ggsql-0.5.2/ggsql/tools/build-hep-assets.mjs |only ggsql-0.5.2/ggsql/tools/config.R | 17 ggsql-0.5.2/ggsql/tools/update-hephaestus.sh |only ggsql-0.5.2/ggsql/tools/vendor.R | 50 47 files changed, 3120 insertions(+), 920 deletions(-)
Title: Automatic Generation of Exams in R
Description: Automatic generation of exams based on exercises in Markdown or LaTeX format,
possibly including R code for dynamic generation of exercise elements.
Exercise types include single-choice and multiple-choice questions, arithmetic problems,
string questions, and combinations thereof (cloze). Output formats include standalone
files (PDF, HTML, Docx, ODT, ...), Moodle XML, QTI 1.2, QTI 2.1, Blackboard, Canvas, OpenOlat, ILIAS, TestVision,
Particify, ARSnova, Kahoot!, Grasple, and TCExam. In addition to fully customizable PDF exams, a standardized PDF format
(NOPS) is provided that can be printed, scanned, and automatically evaluated.
Author: Achim Zeileis [aut, cre] ,
Bettina Gruen [aut] ,
Friedrich Leisch [aut] ,
Nikolaus Umlauf [aut] ,
Niels Smits [aut] ,
Dominik Ernst [ctb] ,
Patrik Keller [ctb],
Reto Stauffer [ctb] ,
Kenji Sato [ctb] ,
Florian Wickelmaier [ctb],
Sebastian Bachler [ct [...truncated...]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams versions 2.4-4 dated 2026-07-31 and 2.4-5 dated 2026-10-08
DESCRIPTION | 12 +++++------- MD5 | 21 +++++++++++---------- NEWS.md | 17 +++++++++++++++++ R/exams2ilias.R | 2 ++ R/read_metainfo.R | 2 +- README.md |only inst/doc/exams.Rnw | 2 +- inst/doc/exams.pdf |binary inst/doc/exams2.pdf |binary man/exams2ilias.Rd | 18 +++++++++++++----- man/include_tikz.Rd | 2 +- vignettes/exams.Rnw | 2 +- 12 files changed, 52 insertions(+), 26 deletions(-)
More information about BoxDensityPlot at CRAN
Permanent link
Title: Estimate and Manipulate Age-Depth Models
Description: Estimate age-depth models from stratigraphic and sedimentological data,
and transform data
between the time and stratigraphic domain.
Author: Niklas Hohmann [aut] ,
Emilia Jarochowska [cre]
Maintainer: Emilia Jarochowska <e.jarochowska@uni-muenster.de>
Diff between admtools versions 0.6.0 dated 2025-05-20 and 0.7.0 dated 2026-10-08
DESCRIPTION | 21 ++++++++------ MD5 | 30 ++++++++++---------- NEWS.md | 6 ++++ R/strat_to_time.fossils.R | 4 +- README.md | 10 ++++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 6 ++-- inst/doc/FossilSim_integration.html | 5 ++- inst/doc/adm_from_sedrate.html | 15 +++++----- inst/doc/adm_from_trace_cont.html | 15 +++++----- inst/doc/adm_plotting.html | 5 ++- inst/doc/admtools.html | 15 +++++----- inst/doc/admtools_doc.html | 1 inst/doc/correlation.html | 7 ++-- man/admtools-package.Rd | 53 +++++++++++++++++++----------------- 16 files changed, 109 insertions(+), 84 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-23 0.1.3
2026-03-05 0.1.2
Title: Estimate Permutation p-Values for Random Forest Importance
Metrics
Description: Estimate significance of importance metrics for a Random Forest
model by permuting the response variable. Produces null distribution of
importance metrics for each predictor variable and p-value of observed.
Provides summary and visualization functions for 'randomForest' results.
Author: Eric Archer [aut, cre]
Maintainer: Eric Archer <eric.ivan.archer@gmail.com>
Diff between rfPermute versions 2.5.5 dated 2025-06-10 and 2.5.6 dated 2026-10-08
DESCRIPTION | 25 ++++++------- MD5 | 30 ++++++++-------- NAMESPACE | 13 ++++--- R/confusionMatrix.R | 8 ++-- R/importance.R | 6 +-- R/plotImpPreds.R | 2 - R/plotInbag.R | 86 ++++++++++++++++++++++++++++++++++++----------- R/plotNull.R | 4 +- R/plotPredictedProbs.R | 2 - R/plotProximity.R | 10 ++--- R/plotTrace.R | 8 ++-- R/rfPermute.R | 3 + R/rfROC.R |only README.md | 11 +++++- man/plotInbag.Rd | 5 +- man/rfPermute-package.Rd | 5 ++ man/rfROC.Rd |only 17 files changed, 147 insertions(+), 71 deletions(-)
Title: JSON Graphics Device
Description: A graphics device that translates R plotting operations into JSON
and streams them over a local connection to an external display
application. The device acts as a pure recorder with no rendering
dependencies; all rendering occurs in that application (e.g. a 'VS Code'
extension or a web browser). Official display applications are available
from the project homepage.
Author: Grant McDermott [aut, cre],
Tatsuya Shima [aut],
Dave Gamble [cph] ,
cJSON contributors [cph]
Maintainer: Grant McDermott <contact@grantmcdermott.com>
Diff between jgd versions 0.2.0 dated 2026-09-27 and 0.2.1 dated 2026-10-08
DESCRIPTION | 7 +- MD5 | 7 +- NEWS.md | 9 ++ tests/testthat/helper-mock-server.R | 110 ++++++++++++++++++++++-------------- tests/testthat/test-mock-server.R |only 5 files changed, 86 insertions(+), 47 deletions(-)
Title: Data Only Package to 'healthyR'
Description: Provides data for functions typically used in the 'healthyR' package.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR.data versions 1.2.0 dated 2025-01-12 and 1.2.1 dated 2026-10-08
DESCRIPTION | 12 MD5 | 53 +-- NEWS.md | 12 R/meta-get-cms-data.R | 9 README.md | 322 ++++++++++++++++++++- man/current_asc_data.Rd | 38 +- man/current_asc_oas_cahps_data.Rd | 38 +- man/current_comp_death_data.Rd | 38 +- man/current_hai_data.Rd | 38 +- man/current_hcahps_data.Rd | 38 +- man/current_hosp_data.Rd | 38 +- man/current_hvbp_data.Rd | 38 +- man/current_ipfqr_data.Rd | 38 +- man/current_maternal_data.Rd | 38 +- man/current_medicare_hospital_spending_data.Rd | 38 +- man/current_oqr_oas_cahps_data.Rd | 38 +- man/current_outpatient_imaging_efficiency_data.Rd | 38 +- man/current_payments_data.Rd | 38 +- man/current_pch_hai_hospital_data.Rd | 38 +- man/current_pch_hcahps_data.Rd | 38 +- man/current_pch_oncology_measures_hospital_data.Rd | 38 +- man/current_pch_outcomes_data.Rd | 38 +- man/current_timely_and_effective_care_data.Rd | 38 +- man/current_unplanned_hospital_visits_data.Rd | 40 +- man/current_va_data.Rd | 38 +- man/get_cms_meta_data.Rd | 7 man/get_provider_meta_data.Rd | 4 tests |only 28 files changed, 748 insertions(+), 433 deletions(-)
Title: Functions and Utilities for Jordan
Description: Provides core functions and utilities for packages and other code
developed by Jordan Mark Barbone.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>
Diff between fuj versions 0.2.2 dated 2025-04-23 and 0.3.0 dated 2026-10-08
DESCRIPTION | 16 +- MD5 | 139 ++++++++++++-------- NAMESPACE | 92 +++++++++++++ NEWS.md | 88 ++++++++++++ R/arithmetic.R | 14 +- R/attributes.R | 6 R/colons.R | 50 +++---- R/condition.R | 204 ++++++++++++++++++++---------- R/conditions-fuj.R |only R/conditions.R |only R/data-frame.R | 88 +++++++----- R/delay.R |only R/encode.R |only R/extract.R | 14 +- R/flip.R | 7 - R/fs.R | 105 ++++++++++++++- R/fuj-package.R | 22 ++- R/hot.R |only R/if-null.R | 2 R/include.R | 51 ++++--- R/list.R | 10 + R/match-arg.R |only R/match.R | 34 ++--- R/muffle.R | 9 - R/names.R | 10 - R/namespace.R | 251 +++++++++++++++++++++++++++---------- R/negate.R |only R/os.R | 17 +- R/package.R |only R/paste.R | 4 R/progress.R |only R/struct.R | 13 + R/utils.R | 51 ++++++- R/vap.R |only R/verbose.R | 29 +--- R/yes-no.R | 54 +++---- README.md | 55 ++++++-- inst/WORDLIST | 5 man/alias_extract.Rd | 2 man/collapse.Rd | 4 man/conditions.Rd |only man/delay.Rd |only man/encode.Rd |only man/exattr.Rd | 2 man/fp.Rd | 59 +++++++- man/fuj-package.Rd | 5 man/hot.Rd |only man/if_null.Rd | 2 man/include.Rd | 38 ++--- man/list0.Rd | 5 man/match_arg.Rd |only man/match_ext.Rd | 18 +- man/muffle.Rd | 2 man/negate.Rd |only man/new_condition.Rd | 56 +++++--- man/op.fuj.Rd | 6 man/quick_df.Rd | 10 - man/require_namespace.Rd | 37 +++++ man/struct.Rd | 15 +- man/vap.Rd |only man/verbose.Rd | 8 - tests/spelling.R | 3 tests/testthat.R | 3 tests/testthat/_snaps/namespace.md |only tests/testthat/_snaps/vap.md |only tests/testthat/test-colons.R | 10 - tests/testthat/test-condition.R | 26 +++ tests/testthat/test-conditions.R |only tests/testthat/test-data-frame.R | 36 ++++- tests/testthat/test-delay.R |only tests/testthat/test-encode.R |only tests/testthat/test-fs.R | 64 ++++++--- tests/testthat/test-hot.R |only tests/testthat/test-if-null.R | 1 tests/testthat/test-include.R | 10 - tests/testthat/test-list.R | 8 + tests/testthat/test-match-arg.R |only tests/testthat/test-muffle.R | 4 tests/testthat/test-namespace.R | 79 +++++++++-- tests/testthat/test-negate.R |only tests/testthat/test-progress.R |only tests/testthat/test-vap.R |only tests/testthat/test-verbose.R | 32 +++- tests/testthat/test-yes-no.R | 82 ++++++------ 84 files changed, 1444 insertions(+), 623 deletions(-)
Title: A Toolbox for Manipulating and Assessing Colors and Palettes
Description: Carries out mapping between assorted color spaces including RGB, HSV, HLS,
CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB.
Qualitative, sequential, and diverging color palettes based on HCL colors
are provided along with corresponding ggplot2 color scales.
Color palette choice is aided by an interactive app (with either a Tcl/Tk
or a shiny graphical user interface) and shiny apps with an HCL color picker and a
color vision deficiency emulator. Plotting functions for displaying
and assessing palettes include color swatches, visualizations of the
HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation
functions include: desaturation, lightening/darkening, mixing, and
simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly).
Details can be found on the project web page at <https://colorspace.R-Forge.R-project.org/>
and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical
Software, <doi:10.18637/ [...truncated...]
Author: Ross Ihaka [aut],
Paul Murrell [aut] ,
Kurt Hornik [aut] ,
Jason C. Fisher [aut] ,
Reto Stauffer [aut] ,
Claus O. Wilke [aut] ,
Claire D. McWhite [aut] ,
Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between colorspace versions 2.1-3 dated 2026-07-12 and 2.1-4 dated 2026-10-08
DESCRIPTION | 12 ++++++------ MD5 | 24 ++++++++++++------------ NEWS.md | 12 ++++++++++++ R/choose_palette.R | 2 +- inst/doc/colorspace.R | 6 +++--- inst/doc/colorspace.Rmd | 12 ++++++------ inst/doc/colorspace.html | 26 +++++++++++++------------- inst/doc/hcl-colors.Rnw | 2 +- inst/doc/hcl-colors.pdf |binary inst/hclwizard/html/R.html | 4 ++-- inst/hclwizard/html/RReg.html | 2 +- vignettes/colorspace.Rmd | 12 ++++++------ vignettes/hcl-colors.Rnw | 2 +- 13 files changed, 64 insertions(+), 52 deletions(-)
Title: Wrangle Large Simulation Studies
Description: An 'R6' class to set up, run, monitor, collate, and debug large simulation studies comprising many small independent replications and treatment configurations. Parallel processing, reproducibility, fault- and error-tolerance, and ability to resume an interrupted or timed-out simulation study are built in.
Author: Pavel N. Krivitsky [aut, cre]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between piecemeal versions 0.2.0 dated 2026-03-11 and 0.3.0 dated 2026-10-08
piecemeal-0.2.0/piecemeal/inst/examples/post.R |only piecemeal-0.2.0/piecemeal/inst/examples/run.R |only piecemeal-0.2.0/piecemeal/inst/examples/setup.R |only piecemeal-0.2.0/piecemeal/tests/testthat/test-piecemeal.R |only piecemeal-0.3.0/piecemeal/DESCRIPTION | 10 piecemeal-0.3.0/piecemeal/MD5 | 50 piecemeal-0.3.0/piecemeal/NAMESPACE | 28 piecemeal-0.3.0/piecemeal/NEWS | 67 piecemeal-0.3.0/piecemeal/NEWS.md | 61 piecemeal-0.3.0/piecemeal/R/Piecemeal.R | 456 +++-- piecemeal-0.3.0/piecemeal/R/consolidate.R | 19 piecemeal-0.3.0/piecemeal/build/stage23.rdb |binary piecemeal-0.3.0/piecemeal/build/vignette.rds |binary piecemeal-0.3.0/piecemeal/inst/doc/piecemeal.R | 43 piecemeal-0.3.0/piecemeal/inst/doc/piecemeal.Rmd | 100 - piecemeal-0.3.0/piecemeal/inst/doc/piecemeal.html | 882 +++++----- piecemeal-0.3.0/piecemeal/inst/examples/2file |only piecemeal-0.3.0/piecemeal/inst/examples/3file |only piecemeal-0.3.0/piecemeal/inst/examples/README.md | 60 piecemeal-0.3.0/piecemeal/man/Piecemeal.Rd | 810 +++++---- piecemeal-0.3.0/piecemeal/man/piecemeal-package.Rd | 2 piecemeal-0.3.0/piecemeal/tests/testthat/test-autorun.R |only piecemeal-0.3.0/piecemeal/tests/testthat/test-cli.R |only piecemeal-0.3.0/piecemeal/tests/testthat/test-cluster.R |only piecemeal-0.3.0/piecemeal/tests/testthat/test-concurrent-status.R |only piecemeal-0.3.0/piecemeal/tests/testthat/test-consolidation.R | 42 piecemeal-0.3.0/piecemeal/tests/testthat/test-test-debug.R |only piecemeal-0.3.0/piecemeal/tests/testthat/test-vignette.R | 129 + piecemeal-0.3.0/piecemeal/tests/testthat/test-worker-results.R | 55 piecemeal-0.3.0/piecemeal/vignettes/piecemeal.Rmd | 100 - 30 files changed, 1887 insertions(+), 1027 deletions(-)
Title: DDI with R
Description: Useful functions for various DDI (Data Documentation Initiative)
related inputs and outputs. Converts data files to and from DDI, SPSS,
Stata, SAS, R and Excel, including user declared missing values.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between DDIwR versions 0.21 dated 2026-09-12 and 0.22 dated 2026-10-08
DESCRIPTION | 6 MD5 | 46 +- NAMESPACE | 5 R/DDIwR_package.R | 4 R/exportCodebook.R | 47 +- R/internals.R | 91 +++- R/metadataDialog.R |only R/metadataProjection.R |only R/metadataSession.R |only R/metadataSnapshot.R |only R/metadataSweepImport.R |only R/parallel.R |only R/readstat_internal.R | 69 ++- inst/ChangeLog | 15 man/DDIwRParallel.Rd |only man/DDIwR_internal.Rd | 7 man/DDIwR_package.Rd | 4 man/exportCodebook.Rd | 19 man/metadataSweepCapture.Rd |only man/metadataSweepImport.Rd |only src/Makevars.in | 12 src/Makevars.win | 12 src/init.c | 21 src/metadata_snapshot.c |only src/metadata_text.c |only src/metadata_text.h |only src/sc_parallel_read.c | 8 src/variable_analysis.c |only src/variable_analysis.h |only src/variable_threads.c |only src/variable_threads.h |only src/xmlvars.c | 996 ++++++++++++-------------------------------- 32 files changed, 588 insertions(+), 774 deletions(-)
Title: Tools for Easier Analysis of Meteorological Fields
Description: Many useful functions and extensions for dealing with
meteorological data in the tidy data framework. Extends 'ggplot2' for
better plotting of scalar and vector fields and provides commonly used
analysis methods in the atmospheric sciences.
Author: Elio Campitelli [cre, aut]
Maintainer: Elio Campitelli <eliocampitelli@gmail.com>
Diff between metR versions 0.18.3 dated 2025-12-09 and 0.19.0 dated 2026-10-08
DESCRIPTION | 10 MD5 | 247 +++---- NAMESPACE | 41 - NEWS.md | 513 +++++++-------- R/ConvertLongitude.R | 81 +- R/Derivate.R | 497 ++++++++------ R/EOF.R | 349 +++++----- R/EOF_methods.R | 202 +++-- R/FitLm.R | 229 +++--- R/FitWave.R | 149 ++-- R/GeostrophicWind.R | 54 - R/GetSMNData.R | 12 R/GetTopography.R | 209 ++++-- R/IdealGas.R | 154 ++-- R/Impute2D.R | 141 ++-- R/ImputeEOF.R | 324 +++++---- R/Interpolate.R | 257 ++++--- R/MakeBreaks.R | 149 +++- R/MaskLand.R | 67 + R/ReadNetCDF.R | 823 +++++++++++++----------- R/RepeatCircular.R | 84 +- R/Smooth2D.R | 95 +- R/Tajectory.R | 273 ++++--- R/WaveFlux.R | 280 +++++--- R/WriteNetCDF.R | 145 ++-- R/arrowGrob.R | 136 ++- R/as-discretised-scale.R | 26 R/coriolis.R | 10 R/cross.R | 23 R/geom_arrow.R | 597 ++++++++++------- R/geom_contour2.r | 290 ++++---- R/geom_contour_fill.R | 78 +- R/geom_contour_tanaka.R | 416 +++++++----- R/geom_label_contour.R | 279 ++++---- R/geom_relief.R | 290 ++++---- R/geom_shadow.R | 329 +++++---- R/geom_streamline.R | 956 ++++++++++++++++------------ R/geom_text_contour.R | 278 ++++---- R/guide_colorstrip.R | 931 ++++++++++++++++----------- R/helpfunctions.R | 527 ++++++++------- R/label-placement.R | 352 +++++----- R/label-scales.R | 43 - R/reverselog_trans.R | 16 R/rk4.R | 50 - R/scale-unbinned.R | 403 ++++++----- R/scale_divergent.R | 56 + R/scale_longitude.R | 147 ++-- R/scale_vector.R | 41 - R/season.R | 132 ++- R/small_funs.R | 76 +- R/standard_atmosphere.R | 442 +++++++----- R/stat_contour2.r | 741 ++++++++++++--------- R/stat_contour_fill.R | 616 +++++++++--------- R/stat_na.R | 96 +- R/stat_subset.R | 48 - R/textContourGrob.R | 600 +++++++++-------- R/theme_fields.R | 49 - R/zzz.R | 59 + README.md | 7 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Visualization-tools.html | 31 inst/doc/Working-with-data.html | 36 - man/Anomaly.Rd | 8 man/Derivate.Rd | 8 man/EOF.Rd | 8 man/FitLm.Rd | 24 man/GeostrophicWind.Rd | 8 man/Impute2D.Rd | 2 man/ImputeEOF.Rd | 5 man/JumpBy.Rd | 8 man/Mag.Rd | 14 man/MakeBreaks.Rd | 57 + man/Percentile.Rd | 8 man/ReadNetCDF.Rd | 2 man/WaveFlux.Rd | 45 - man/WrapCircular.Rd | 24 man/discretised_scale.Rd | 2 man/geom_arrow.Rd | 26 man/geom_contour2.Rd | 42 - man/geom_contour_fill.Rd | 26 man/geom_contour_tanaka.Rd | 2 man/geom_relief.Rd | 28 man/geom_streamline.Rd | 31 man/geom_text_contour.Rd | 30 man/guide_colourstrip.Rd | 24 man/logic.Rd | 10 man/map_labels.Rd | 26 man/metR.Rd | 5 man/reverselog_trans.Rd | 24 man/scale_divergent.Rd | 26 man/scale_longitude.Rd | 26 man/scale_stroke.colour_continuous.Rd | 2 man/standard_atmosphere.Rd | 2 man/stat_na.Rd | 26 man/stat_subset.Rd | 26 man/thermodynamics.Rd | 10 man/waves.Rd | 10 tests/testthat.R | 4 tests/testthat/era5_timestamp.nc |only tests/testthat/test-GetTopography.R | 22 tests/testthat/test-ReadNetCDF.R | 157 ++-- tests/testthat/test-Smooth2D.R | 24 tests/testthat/test-breaks.R | 35 - tests/testthat/test-derivate.R | 228 +++--- tests/testthat/test-eof.R | 151 ++-- tests/testthat/test-fitlm.R | 112 +-- tests/testthat/test-imputeeof.R | 57 + tests/testthat/test-interpolate.R | 49 - tests/testthat/test-season.R | 37 - tests/testthat/test-smallfun.R | 55 - tests/testthat/test-thermodynamics.R | 86 +- tests/testthat/test-trajectory.R | 46 - tests/testthat/test-vis-arrow.R | 56 - tests/testthat/test-vis-contour2.R | 121 +-- tests/testthat/test-vis-contour_fill.R | 88 +- tests/testthat/test-vis-discretised-scale.R | 53 - tests/testthat/test-vis-geom-relief.R | 78 +- tests/testthat/test-vis-guide_colorstrip.R | 41 - tests/testthat/test-vis-streamline.R | 109 ++- tests/testthat/test-vis-text-contour.R | 157 ++-- tests/testthat/test-waveflux.R | 9 tests/testthat/test-waves.R | 27 tests/testthat/test_text_contour.R | 1 tests/testthat/tests.R | 33 125 files changed, 9654 insertions(+), 7399 deletions(-)
Title: Random Effects Latent Class Analysis
Description: Fits standard and random effects latent class models. The single level random effects model is described in Qu et al <doi:10.2307/2533043> and the two level random effects model in Beath and Heller <doi:10.1177/1471082X0800900302>. Examples are given for their use in diagnostic testing.
Author: Ken Beath [aut, cre]
Maintainer: Ken Beath <ken@kjbeath.id.au>
Diff between randomLCA versions 1.1-4 dated 2024-09-23 and 1.1-5 dated 2026-10-07
randomLCA-1.1-4/randomLCA/inst/doc/randomLCA-package.pdf |only randomLCA-1.1-4/randomLCA/inst/doc/randomLCA-package.pdf.asis |only randomLCA-1.1-4/randomLCA/vignettes/randomLCA-package.pdf.asis |only randomLCA-1.1-5/randomLCA/DESCRIPTION | 13 - randomLCA-1.1-5/randomLCA/MD5 | 32 ++-- randomLCA-1.1-5/randomLCA/NAMESPACE | 8 - randomLCA-1.1-5/randomLCA/R/bestlca.R | 78 +++++----- randomLCA-1.1-5/randomLCA/R/fitFixed.R | 36 +--- randomLCA-1.1-5/randomLCA/R/outcomeProbs.R | 6 randomLCA-1.1-5/randomLCA/R/randomLCA.R | 23 +- randomLCA-1.1-5/randomLCA/R/refit.randomLCA.R | 24 ++- randomLCA-1.1-5/randomLCA/build/partial.rdb |binary randomLCA-1.1-5/randomLCA/build/vignette.rds |binary randomLCA-1.1-5/randomLCA/inst/NEWS | 8 + randomLCA-1.1-5/randomLCA/inst/doc/randomLCA-package.html |only randomLCA-1.1-5/randomLCA/inst/doc/randomLCA-package.html.asis |only randomLCA-1.1-5/randomLCA/man/outcomeProbs.Rd | 2 randomLCA-1.1-5/randomLCA/man/randomLCA.Rd | 4 randomLCA-1.1-5/randomLCA/vignettes/randomLCA-package.Rmd |only randomLCA-1.1-5/randomLCA/vignettes/randomLCA-package.bib |only randomLCA-1.1-5/randomLCA/vignettes/randomLCA-package.html.asis |only 21 files changed, 127 insertions(+), 107 deletions(-)
Title: Venn Diagram
Description: Generate Venn plots, summary tables, and ellipse paths for polygon clipping.
Provides direct access to subsets of interest and offers flexible customization of Venn diagrams.
Summary tables are also available when Venn diagram visualization is not suitable.
Author: Joon-Keat Lai [aut, cre, cph]
Maintainer: Joon-Keat Lai <p10911004@gmail.com>
Diff between venny versions 0.0.3 dated 2026-05-27 and 0.0.4 dated 2026-10-07
DESCRIPTION | 16 ++++++------ MD5 | 23 ++++++++++------- NEWS.md | 44 ++++++++++++++++++++++----------- R/params.R | 14 ++++++---- R/utils.R | 27 +++++++++++++------- R/venny.R | 5 ++- README.md | 57 +++++++++++++++++++++++--------------------- build |only inst |only man/venn_summary.Rd | 2 - man/venny.Rd | 2 - tests/testthat/test-venny.R | 13 ++++------ vignettes |only 13 files changed, 119 insertions(+), 84 deletions(-)
Title: Model-Robust Standardization in Cluster-Randomized Trials
Description: Implements model-robust standardization for cluster-randomized trials (CRTs). Provides functions that standardize user-specified regression models to estimate marginal treatment effects. The targets include the cluster-average and individual-average treatment effects, with utilities for variance estimation and example simulation datasets. Methods are described in Li, Tong, Fang, Cheng, Kahan, and Wang (2025) <doi:10.1002/sim.70270>.
Author: Jiaqi Tong [aut],
Changjun Li [aut, cre],
Xi Fang [aut],
Chao Cheng [aut],
Bingkai Wang [aut],
Fan Li [aut]
Maintainer: Changjun Li <changjun.li@yale.edu>
Diff between MRStdCRT versions 0.1.1 dated 2025-11-11 and 0.1.2 dated 2026-10-07
DESCRIPTION | 6 MD5 | 25 R/MRStdCRT_fit.R | 97 +-- R/MRStdCRT_point.R | 135 +++-- R/validate.R |only README.md | 2 build/vignette.rds |binary inst/doc/introduction.R |only inst/doc/introduction.Rmd | 124 +++- inst/doc/introduction.html | 1180 +++++++++++++++++++++++---------------------- man/MRStdCRT_fit.Rd | 13 man/MRStdCRT_point.Rd | 8 man/summary.MRS_obj.Rd | 5 tests |only vignettes/introduction.Rmd | 124 +++- 15 files changed, 963 insertions(+), 756 deletions(-)
Title: Tools for Educational and Psychological Measurement
Description: 'Provides an interactive toolkit for educational and psychological measurement implemented using the 'shiny' framework. The package supports content validity analysis, dimensionality assessment, and Classical Test Theory using the 'CTT' package (Willse, 2018) <doi:10.32614/CRAN.package.CTT>. Item Response Theory (IRT) analyses are conducted via 'mirt' (Chalmers, 2012) <doi:10.18637/jss.v048.i06>. Exploratory Factor Analysis is performed using 'psych' (Revelle, 2025), while Confirmatory Factor Analysis (CFA) and Structural Equation Modeling (SEM) are based on the 'lavaan' framework (Rosseel, 2012) <doi:10.18637/jss.v048.i02>. The CFA/SEM module features interactive model specification, automatic model comparison, modification indices, comprehensive fit diagnostics, path diagram visualization, and HTML report generation. The application allows users to upload data, evaluate statistical models, visualize results, and export outputs through an intuitive graphical interfac [...truncated...]
Author: Hasan Djidu [aut, cre] ,
Heri Retnawati [ctb]
Maintainer: Hasan Djidu <hasandjidu@gmail.com>
Diff between measureR versions 0.0.3 dated 2026-05-15 and 0.0.5 dated 2026-10-07
measureR-0.0.3/measureR/inst/app/lta_info_vis.R |only measureR-0.0.3/measureR/inst/app/lta_ui.R |only measureR-0.0.3/measureR/inst/app/serverLTA.R |only measureR-0.0.5/measureR/DESCRIPTION | 15 measureR-0.0.5/measureR/MD5 | 46 measureR-0.0.5/measureR/NEWS.md | 26 measureR-0.0.5/measureR/build/vignette.rds |binary measureR-0.0.5/measureR/inst/app/ai_helper.R |only measureR-0.0.5/measureR/inst/app/ai_widget_ui.R |only measureR-0.0.5/measureR/inst/app/app.R | 80 measureR-0.0.5/measureR/inst/app/cfa_report.Rmd | 65 measureR-0.0.5/measureR/inst/app/cfa_ui.R | 250 + measureR-0.0.5/measureR/inst/app/console_widget_ui.R |only measureR-0.0.5/measureR/inst/app/contentval_report.Rmd |only measureR-0.0.5/measureR/inst/app/contentval_ui.R | 21 measureR-0.0.5/measureR/inst/app/ctt_report.Rmd |only measureR-0.0.5/measureR/inst/app/ctt_ui.R | 55 measureR-0.0.5/measureR/inst/app/efa_report.Rmd |only measureR-0.0.5/measureR/inst/app/efa_ui.R | 80 measureR-0.0.5/measureR/inst/app/homepage_ui.R | 6 measureR-0.0.5/measureR/inst/app/irt_info_vis.R |only measureR-0.0.5/measureR/inst/app/irt_report.Rmd |only measureR-0.0.5/measureR/inst/app/irt_ui.R |only measureR-0.0.5/measureR/inst/app/serverAIWidget.R |only measureR-0.0.5/measureR/inst/app/serverCFA.R | 2464 +++++++++++------ measureR-0.0.5/measureR/inst/app/serverCTT.R | 127 measureR-0.0.5/measureR/inst/app/serverContentval.R | 81 measureR-0.0.5/measureR/inst/app/serverEFA.R | 474 +++ measureR-0.0.5/measureR/inst/app/serverIRT.R |only measureR-0.0.5/measureR/inst/app/styleCSS.R | 32 measureR-0.0.5/measureR/inst/app/ui_module.R | 4 31 files changed, 2897 insertions(+), 929 deletions(-)
Title: CRAN Task Views
Description: Infrastructure for task views to CRAN-style repositories: Querying task views and installing the associated
packages (client-side tools), generating HTML pages and storing task view information in the repository
(server-side tools).
Author: Achim Zeileis [aut, cre] ,
Kurt Hornik [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between ctv versions 1.0-0 dated 2026-06-30 and 1.0-1 dated 2026-10-07
ctv-1.0-0/ctv/man/figures |only ctv-1.0-1/ctv/DESCRIPTION | 8 ++++---- ctv-1.0-1/ctv/MD5 | 19 +++++++++---------- ctv-1.0-1/ctv/NEWS.md | 5 +++++ ctv-1.0-1/ctv/R/ctv-md.R | 34 +++++++++++++++++++++++----------- ctv-1.0-1/ctv/R/ctv-server.R | 8 ++++++++ ctv-1.0-1/ctv/README.md | 2 +- ctv-1.0-1/ctv/build/vignette.rds |binary ctv-1.0-1/ctv/inst/doc/ctv-howto.Rmd | 1 + ctv-1.0-1/ctv/inst/doc/ctv-howto.html | 1 + ctv-1.0-1/ctv/vignettes/ctv-howto.Rmd | 1 + 11 files changed, 53 insertions(+), 26 deletions(-)
Title: Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico [aut, cre],
Matias D. Cattaneo [aut],
Max H. Farrell [aut],
Rocio Titiunik [aut]
Maintainer: Sebastian Calonico <scalonico@ucdavis.edu>
Diff between rdrobust versions 4.0.0 dated 2026-05-16 and 4.1.1 dated 2026-10-07
rdrobust-4.0.0/rdrobust/build |only rdrobust-4.0.0/rdrobust/inst |only rdrobust-4.0.0/rdrobust/vignettes |only rdrobust-4.1.1/rdrobust/DESCRIPTION | 12 - rdrobust-4.1.1/rdrobust/MD5 | 40 +++-- rdrobust-4.1.1/rdrobust/R/functions.R | 104 +++++++++++++- rdrobust-4.1.1/rdrobust/R/rdbwselect.R | 88 ++++++++---- rdrobust-4.1.1/rdrobust/R/rdplot.R | 23 ++- rdrobust-4.1.1/rdrobust/R/rdrobust.R | 169 +++++++++++++++++++----- rdrobust-4.1.1/rdrobust/man/rdbwselect.Rd | 8 - rdrobust-4.1.1/rdrobust/man/rdplot.Rd | 4 rdrobust-4.1.1/rdrobust/man/rdrobust-package.Rd | 4 rdrobust-4.1.1/rdrobust/man/rdrobust.Rd | 30 +++- rdrobust-4.1.1/rdrobust/tests |only 14 files changed, 380 insertions(+), 102 deletions(-)
Title: Sensitivity Analysis Using Weighted Rank Statistics
Description: Performs a sensitivity analysis using weighted rank tests in observational studies with I blocks of size J; see Rosenbaum (2024) <doi:10.1080/01621459.2023.2221402>. The package can perform adaptive inference in block designs; see Rosenbaum (2012) <doi:10.1093/biomet/ass032>. The package can increase design sensitivity using the conditioning tactic in Rosenbaum (2025) <doi:10.1093/jrsssb/qkaf007>. The main functions are wgtRank(), wgtRankCI(), wgtRanktt() and wgtRankC().
Author: Paul Rosenbaum [aut, cre]
Maintainer: Paul Rosenbaum <rosenbaum@wharton.upenn.edu>
Diff between weightedRank versions 0.7.0 dated 2026-01-11 and 0.7.2 dated 2026-10-07
weightedRank-0.7.0/weightedRank/R/estPower.R |only weightedRank-0.7.0/weightedRank/man/estPower.Rd |only weightedRank-0.7.2/weightedRank/DESCRIPTION | 6 +++--- weightedRank-0.7.2/weightedRank/MD5 | 10 ++++------ weightedRank-0.7.2/weightedRank/build/partial.rdb |binary weightedRank-0.7.2/weightedRank/man/Peri24and15.Rd | 9 +++++---- weightedRank-0.7.2/weightedRank/man/gwgtRankC.Rd | 7 +++++-- 7 files changed, 17 insertions(+), 15 deletions(-)
Title: Wasserstein Index Generation (WIG) Model
Description: Efficient implementation of several Optimal Transport algorithms in Fangzhou Xie (2025) <doi:10.48550/arXiv.2504.08722> and the Wasserstein Index Generation (WIG) model in Fangzhou Xie (2020) <doi:10.1016/j.econlet.2019.108874>.
Author: Fangzhou Xie [aut, cre, cph]
Maintainer: Fangzhou Xie <fangzhou.xie@rutgers.edu>
Diff between rwig versions 0.2.0 dated 2026-09-19 and 0.3.0 dated 2026-10-07
DESCRIPTION | 8 - MD5 | 74 ++++++----- NEWS.md | 37 +++++ R/cpp.R | 4 R/specs.R | 5 R/wdl.R | 48 ++++--- R/zzz.R | 10 - inst/doc/barycenter.html | 3 inst/doc/cuda.html | 3 inst/doc/gradient.html | 3 inst/doc/sinkhorn.html | 3 inst/doc/specs.html | 3 inst/doc/threading.html | 3 inst/doc/tsvd.html | 3 inst/doc/wdl-model.html | 60 ++++----- inst/doc/wig-model.html | 38 +++--- inst/include/barycenter_impl.hpp | 5 inst/include/cuda_kernels.cuh | 17 +- inst/include/iter_solver.hpp | 10 + inst/include/linalg.hpp | 27 ++++ inst/include/logdomain.hpp | 242 ++++++++++++++++++++++----------------- inst/include/sinkhorn_impl.hpp | 6 inst/include/thread_pool.hpp | 134 +++++++++++++-------- inst/include/vexp.hpp |only inst/include/wdl_impl.hpp | 22 +-- inst/tinytest/test_perf.R |only man/wdl_specs.Rd | 5 src/Makevars.in | 24 +++ src/Makevars.win | 24 +++ src/barycenter_impl_log.cpp | 45 +++---- src/barycenter_impl_parallel.cpp | 33 +---- src/cuda_barycenter.cu | 65 +++------- src/cuda_kernels.cu | 14 ++ src/cuda_wdl.cu | 49 ++++--- src/init.cpp | 4 src/sinkhorn_impl_log.cpp | 36 +++-- src/sinkhorn_impl_vanilla.cpp | 8 - src/wdl.cpp | 26 +--- src/wdl_impl.cpp | 158 ++++++++++++++++--------- 39 files changed, 735 insertions(+), 524 deletions(-)
Title: Significance Tests for Palaeoenvironmental Reconstructions
Description: Several tests of quantitative palaeoenvironmental reconstructions
from microfossil assemblages, including the null model tests of the
statistically significant of reconstructions developed by Telford and Birks
(2011) <doi:10.1016/j.quascirev.2011.03.002>, and tests of the effect of
spatial autocorrelation on transfer function model performance using methods
from Telford and Birks (2009) <doi:10.1016/j.quascirev.2008.12.020> and
Trachsel and Telford (2016) <doi:10.5194/cp-12-1215-2016>. Age-depth models with
generalized mixed-effect regression from Heegaard et al (2005)
<doi:10.1191/0959683605hl836rr> are also included.
Author: Richard Telford [aut, cre, cph],
Mathias Trachsel [ctb]
Maintainer: Richard Telford <Richard.Telford@uib.no>
Diff between palaeoSig versions 2.1-4 dated 2025-07-29 and 2.1-5 dated 2026-10-07
DESCRIPTION | 17 +-- MD5 | 38 +++--- NAMESPACE | 185 +++++++++++++++++++--------------- NEWS.md | 4 R/1_randomTF.R | 13 +- R/centipede.plot.r | 13 +- R/coverage.plot.r | 31 ++--- R/data.R | 6 - R/jointsig.r | 1 R/palaeoSig-package.R | 3 R/plot.obscor.R | 9 - R/plot.palaeoSig.R | 7 - R/simulate_species.r | 5 build/partial.rdb |binary build/vignette.rds |binary inst/doc/h-block-crossvalidation.html | 19 +-- inst/doc/randomTF-spatial.html | 15 +- man/Atlantic.Rd | 4 man/Hill.N2.core.Rd | 4 man/palaeoSig-package.Rd | 1 20 files changed, 199 insertions(+), 176 deletions(-)
Title: Create and Register Conditions
Description: An interface for creating new condition generators objects.
Generators are special functions that can be saved in registries and linked
to other functions. Utilities for documenting your generators, and new
conditions is provided for package development.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>
Diff between cnd versions 0.1.1 dated 2025-11-21 and 0.2.0 dated 2026-10-07
DESCRIPTION | 9 - MD5 | 72 ++++---- NAMESPACE | 21 ++ NEWS.md | 33 +++ R/cli.R | 37 ++-- R/cnd-cnd-conditions.R | 104 +++++------ R/cnd-package.R | 24 ++ R/condition.R | 296 ++++++++++++++++++++++------------ R/defaults.R |only R/document.R | 81 ++++----- R/format.R | 2 R/handlers.R | 3 R/register.R | 24 +- R/utils.R | 12 - README.md | 96 +++++------ inst/WORDLIST | 3 man/cnd-cnd-conditions.Rd | 176 ++++++++++---------- man/cnd-package.Rd | 11 + man/cnd_document.Rd | 12 - man/condition.Rd | 63 +++---- man/defaults.Rd |only tests/testthat/_snaps/condition.md | 20 +- tests/testthat/_snaps/defaults.md |only tests/testthat/_snaps/document.md | 110 ++++++------ tests/testthat/_snaps/handlers.md | 6 tests/testthat/_snaps/print.md | 121 +++++++++---- tests/testthat/helper.R | 75 +++++++- tests/testthat/t0 |only tests/testthat/test-cnd-package.R | 4 tests/testthat/test-condition.R | 82 ++++++--- tests/testthat/test-defaults.R |only tests/testthat/test-document.R | 8 tests/testthat/test-is.R | 4 tests/testthat/test-print.R | 15 + tests/testthat/test-register.R | 2 tests/testthat/test-test-package-t0.R |only 36 files changed, 945 insertions(+), 581 deletions(-)
Title: Lazy Search in R Packages, Task Views, CRAN, the Web. All-in-One
Download
Description: Search by keywords in R packages, task views, CRAN, the web and display the results in the console or in txt, html or pdf files. Download the package documentation (html index, README, NEWS, pdf manual, vignettes, source code, binaries) with a single instruction. Visualize the package dependencies and CRAN checks. Compare the package versions, unload and install the packages and their dependencies in a safe order. Explore CRAN archives. Use the above functions for task view maintenance. Access web search engines from the console thanks to 80+ bookmarks. All functions accept standard and non-standard evaluation.
Author: Patrice Kiener [aut, cre]
Maintainer: Patrice Kiener <rpackages@inmodelia.com>
Diff between RWsearch versions 5.2.6 dated 2025-07-31 and 5.2.8 dated 2026-10-07
DESCRIPTION | 10 ++-- MD5 | 28 ++++++------- NAMESPACE | 21 ++++++--- NEWS | 11 ++++- R/p_archive.R | 3 - R/p_down.R | 3 - R/s_sos.R | 13 ++++++ build/vignette.rds |binary inst/doc/RWsearch-1-Introduction.html | 12 ++--- inst/doc/RWsearch-2-Display-Download-Documentation.html | 12 ++--- inst/doc/RWsearch-3-Package-versions-and-dependencies.html | 12 ++--- inst/doc/RWsearch-4-Tools-for-taskviews.html | 12 ++--- inst/doc/RWsearch-5-Web-search-engines.html | 8 +-- man/RWsearch-package.Rd | 5 ++ man/s_sos.Rd | 7 +++ 15 files changed, 99 insertions(+), 58 deletions(-)
Title: Access Data from the ROCEEH Out of Africa Database (ROAD)
Description: Provides an R interface to the ROCEEH Out of Africa Database (ROAD) (<https://www.roceeh.uni-tuebingen.de/roadweb/smarty_road_simple_search.php>), a comprehensive resource for archaeological, anthropological, paleoenvironmental and geographic data from Africa and Eurasia dating from 3,000,000 to 20,000 years BP. The package allows users to retrieve data from the online database at different levels of detail and customize search requests. Functions return data frame objects compatible with other R packages used in prehistoric and paleoenvironmental science, supporting reproducible workflows as an input provider.
Author: Zara Kanaeva [aut] ,
Andrew Kandel [ctb] ,
Jesper Borre Pedersen [aut] ,
Christian Sommer [aut, cre] ,
Timo Patrick Streicher [aut] ,
Research Center: The Role of Culture in Early Expansions of Humans
[cph],
Heidelberg Academy of Sciences and Humani [...truncated...]
Maintainer: Christian Sommer <christian.sommer@uni-tuebingen.de>
Diff between roadDB versions 0.2.0 dated 2026-08-25 and 1.0.0 dated 2026-10-07
DESCRIPTION | 6 ++--- MD5 | 8 +++---- NEWS.md | 20 ++++++------------ README.md | 16 +++++++++----- inst/CITATION | 62 +++++++++++++++++++++++++++++++++++++++------------------- 5 files changed, 66 insertions(+), 46 deletions(-)
Title: Effective Population Size from Stage-Structured Populations
Description: Computes effective population size (Ne) and the Ne/N ratio for
stage-structured populations using the matrix population model framework
of Yonezawa (2000) <doi:10.1111/j.0014-3820.2000.tb01244.x>. Functions
are provided for sexually reproducing, clonally reproducing, and mixed
(sexual + clonal) populations. Includes sensitivity and elasticity
analyses for Ne/N with respect to vital rates.
Author: Raymond L. Tremblay [aut, cre]
Maintainer: Raymond L. Tremblay <raymond.tremblay@gmail.com>
Diff between NeStage versions 0.8.0 dated 2026-03-17 and 0.8.1 dated 2026-10-07
DESCRIPTION | 10 MD5 | 57 - NEWS.md | 20 R/Ne_clonal_Y2000.R | 107 +-- R/Ne_mixed_Y2000.R | 71 +- R/Ne_sensitivity.R | 68 +- R/Ne_sexual_Y2000.R | 67 +- R/utils_fecundity.R |only README.md | 10 build/partial.rdb |binary build/vignette.rds |binary inst/doc/NeStage_functions.html | 293 ++++----- inst/doc/NeStage_quickstart.html | 51 - inst/doc/NeStage_sensitivity.html | 175 ++--- inst/doc/Ne_Yonezawa2000.R | 23 inst/doc/Ne_Yonezawa2000.Rmd | 25 inst/doc/Ne_Yonezawa2000.html | 1092 ++++++++++++++++------------------ man/Ne_clonal_Y2000.Rd | 14 man/Ne_clonal_Y2000_both.Rd | 7 man/Ne_mixed_Y2000.Rd | 10 man/Ne_mixed_Y2000_both.Rd | 7 man/Ne_sensitivity_L.Rd | 7 man/Ne_sensitivity_Vc.Rd | 7 man/Ne_sensitivity_Vk.Rd | 7 man/Ne_sensitivity_d.Rd | 7 man/Ne_sexual_Y2000.Rd | 11 tests/testthat/test-examples.R | 84 ++ tests/testthat/test-generation-time.R |only tests/testthat/test-recruit-row.R |only tests/testthat/test-table4.R | 105 +-- vignettes/Ne_Yonezawa2000.Rmd | 25 31 files changed, 1253 insertions(+), 1107 deletions(-)
Title: Tabulate Descriptive Statistics in Multiple Formats
Description: Creates a table of descriptive statistics
for factor and numeric columns in a data frame. Displays
these by groups, if any. Highly customizable, with support
for 'html' and 'pdf' provided by 'kableExtra'. Respects
original column order, column labels, and factor level order.
See ?tablet.data.frame and vignettes.
Author: Tim Bergsma [aut, cre]
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between tablet versions 0.9.1 dated 2026-07-19 and 0.9.4 dated 2026-10-07
DESCRIPTION | 6 +++--- MD5 | 13 +++++++++---- NAMESPACE | 1 + R/listado.R |only inst/doc/tablet-introduction-html.html | 4 ++-- inst/doc/tablet-introduction-pdf.pdf |binary inst/shiny-examples/listado |only man/listado.Rd |only 8 files changed, 15 insertions(+), 9 deletions(-)
Title: Sequential Experimental Design via Matching on-the-Fly with
Estimation and Testing
Description: DEPRECATED. This package is deprecated and no longer maintained; all of
its functionality has been superseded by the 'EDI' package, which provides faster,
more general, and actively maintained implementations of the same sequential designs
and inference procedures. Please migrate to 'EDI'. This package previously generated
the following sequential two-arm experimental designs:
(1) completely randomized (Bernoulli)
(2) balanced completely randomized
(3) Efron's (1971) Biased Coin
(4) Atkinson's (1982) Covariate-Adjusted Biased Coin
(5) Kapelner and Krieger's (2014) Covariate-Adjusted Matching on the Fly
(6) Kapelner and Krieger's (2021) CARA Matching on the Fly with Differential Covariate Weights
(7) Kapelner and Krieger's (2021) CARA Matching on the Fly with Differential Covariate Weights (Stepwise)
and also provides the following types of inference:
(1) estimation (with both Z-style estimators and OLS estimators),
(2) frequentist testing (via asymptotic distribution results and via em [...truncated...]
Author: Adam Kapelner [aut, cre],
Abba Krieger [aut]
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between SeqExpMatch versions 0.1.1 dated 2026-08-19 and 0.1.1.1 dated 2026-10-07
DESCRIPTION | 18 +++++-- MD5 | 18 +++---- NEWS.md | 17 +++++++ R/SeqExpMatch.R | 7 +++ R/design.R | 107 ++++++++++++++++++++++++++++++++++++++++------ R/inference.R | 72 ++++++++++++++++++++++++------ R/zzz.R | 13 ++++- man/SeqDesign.Rd | 83 +++++++++++++++++++++++++++++++++-- man/SeqDesignInference.Rd | 52 +++++++++++++++++++++- man/SeqExpMatch.Rd | 16 ++++++ 10 files changed, 355 insertions(+), 48 deletions(-)
Title: 'Amazon Web Services' Storage Services
Description: Interface to 'Amazon Web Services' storage services,
including 'Simple Storage Service' ('S3') and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.storage versions 0.10.0 dated 2026-05-30 and 0.11.0 dated 2026-10-07
DESCRIPTION | 11 MD5 | 232 +-- NAMESPACE | 36 R/backup_interfaces.R | 638 +++------ R/backup_operations.R | 558 ++++++-- R/backup_service.R | 20 R/dlm_interfaces.R | 48 R/dlm_operations.R | 24 R/dlm_service.R | 6 R/ebs_interfaces.R | 36 R/ebs_operations.R | 24 R/ebs_service.R | 4 R/efs_interfaces.R | 156 -- R/efs_operations.R | 97 - R/efs_service.R | 4 R/finspacedata_interfaces.R | 186 -- R/finspacedata_operations.R | 93 - R/finspacedata_service.R | 4 R/fsx_interfaces.R | 288 +--- R/fsx_operations.R | 144 +- R/fsx_service.R | 4 R/glacier_interfaces.R | 162 -- R/glacier_operations.R | 99 - R/glacier_service.R | 4 R/omics_interfaces.R | 606 ++------ R/omics_operations.R | 336 +++- R/omics_service.R | 4 R/recyclebin_interfaces.R | 60 R/recyclebin_operations.R | 30 R/recyclebin_service.R | 6 R/s3_custom.R | 196 ++ R/s3_interfaces.R | 589 +++----- R/s3_operations.R | 678 +++++++--- R/s3_service.R | 27 R/s3control_interfaces.R | 486 ++----- R/s3control_operations.R | 291 ++-- R/s3control_service.R | 6 R/s3outposts_interfaces.R | 27 R/s3outposts_operations.R | 15 R/s3outposts_service.R | 4 R/s3tables_interfaces.R | 240 +-- R/s3tables_operations.R | 147 +- R/s3tables_service.R | 4 R/storagegateway_interfaces.R | 576 ++------ R/storagegateway_operations.R | 288 ++-- R/storagegateway_service.R | 4 R/sysdata.rda |only man/backup.Rd | 20 man/backup_create_backup_access_point.Rd |only man/backup_delete_backup_access_point.Rd |only man/backup_describe_backup_access_point.Rd |only man/backup_list_backup_access_points.Rd |only man/backup_list_backup_access_points_by_recovery_point.Rd |only man/backup_list_backup_access_points_by_resource.Rd |only man/backup_list_backup_job_summaries.Rd | 4 man/backup_list_copy_job_summaries.Rd | 4 man/backup_list_protected_resources.Rd | 9 man/backup_list_recovery_points_by_resource.Rd | 2 man/backup_list_restore_job_summaries.Rd | 4 man/backup_list_scan_job_summaries.Rd | 4 man/dlm.Rd | 4 man/ebs.Rd | 4 man/ebs_start_snapshot.Rd | 6 man/efs.Rd | 4 man/efs_create_file_system.Rd | 2 man/efs_update_file_system.Rd | 2 man/finspacedata.Rd | 4 man/fsx.Rd | 4 man/glacier.Rd | 4 man/omics.Rd | 4 man/omics_create_share.Rd | 2 man/omics_start_read_set_activation_job.Rd | 2 man/omics_start_run.Rd | 13 man/omics_start_run_batch.Rd | 2 man/recyclebin.Rd | 4 man/s3.Rd | 26 man/s3_complete_multipart_upload.Rd | 4 man/s3_copy_object.Rd | 32 man/s3_create_multipart_upload.Rd | 15 man/s3_delete_object.Rd | 2 man/s3_delete_object_annotation.Rd |only man/s3_generate_presigned_post.Rd |only man/s3_get_bucket_acl.Rd | 2 man/s3_get_bucket_cors.Rd | 2 man/s3_get_bucket_location.Rd | 2 man/s3_get_bucket_notification.Rd | 2 man/s3_get_bucket_notification_configuration.Rd | 2 man/s3_get_bucket_policy.Rd | 2 man/s3_get_object.Rd | 10 man/s3_get_object_annotation.Rd |only man/s3_head_bucket.Rd | 2 man/s3_head_object.Rd | 8 man/s3_list_object_annotations.Rd |only man/s3_put_bucket_acl.Rd | 2 man/s3_put_bucket_cors.Rd | 2 man/s3_put_bucket_replication.Rd | 2 man/s3_put_bucket_request_payment.Rd | 2 man/s3_put_bucket_tagging.Rd | 2 man/s3_put_bucket_versioning.Rd | 2 man/s3_put_bucket_website.Rd | 2 man/s3_put_object.Rd | 33 man/s3_put_object_acl.Rd | 2 man/s3_put_object_annotation.Rd |only man/s3_put_public_access_block.Rd | 2 man/s3_update_bucket_metadata_annotation_table_configuration.Rd |only man/s3control.Rd | 4 man/s3outposts.Rd | 4 man/s3tables.Rd | 4 man/storagegateway.Rd | 4 tests/testthat.R |only tests/testthat/test_backup.R | 52 tests/testthat/test_dlm.R | 2 tests/testthat/test_ebs.R | 2 tests/testthat/test_efs.R | 10 tests/testthat/test_finspacedata.R | 3 tests/testthat/test_fsx.R | 21 tests/testthat/test_glacier.R | 2 tests/testthat/test_omics.R | 14 tests/testthat/test_recyclebin.R | 2 tests/testthat/test_s3.R | 4 tests/testthat/test_s3control.R | 2 tests/testthat/test_s3outposts.R | 6 tests/testthat/test_s3tables.R | 3 tests/testthat/test_storagegateway.R | 11 124 files changed, 4197 insertions(+), 3721 deletions(-)
Title: 'Amazon Web Services' Networking & Content Delivery Services
Description: Interface to 'Amazon Web Services' networking and content
delivery services, including 'Route 53' Domain Name System service,
'CloudFront' content delivery, load balancing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.networking versions 0.10.0 dated 2026-05-30 and 0.11.0 dated 2026-10-07
DESCRIPTION | 11 MD5 | 314 +-- NAMESPACE | 36 R/apigateway_interfaces.R | 663 ++----- R/apigateway_operations.R | 372 ++-- R/apigateway_service.R | 4 R/apigatewaymanagementapi_interfaces.R | 12 R/apigatewaymanagementapi_operations.R | 9 R/apigatewaymanagementapi_service.R | 4 R/apigatewayv2_interfaces.R | 546 +---- R/apigatewayv2_operations.R | 309 ++- R/apigatewayv2_service.R | 4 R/appfabric_interfaces.R | 156 - R/appfabric_operations.R | 78 R/appfabric_service.R | 4 R/appmesh_interfaces.R | 228 -- R/appmesh_operations.R | 114 - R/appmesh_service.R | 6 R/arczonalshift_interfaces.R | 90 R/arczonalshift_operations.R | 45 R/arczonalshift_service.R | 4 R/backupgateway_interfaces.R | 150 - R/backupgateway_operations.R | 79 R/backupgateway_service.R | 6 R/cloudfront_interfaces.R | 930 +++------- R/cloudfront_operations.R | 501 +++-- R/cloudfront_service.R | 4 R/cloudfrontkeyvaluestore_interfaces.R | 36 R/cloudfrontkeyvaluestore_operations.R | 18 R/cloudfrontkeyvaluestore_service.R | 4 R/directconnect_interfaces.R | 469 ++--- R/directconnect_operations.R | 568 +++++- R/directconnect_service.R | 14 R/elb_interfaces.R | 174 - R/elb_operations.R | 87 R/elb_service.R | 6 R/elbv2_interfaces.R | 306 +-- R/elbv2_operations.R | 155 + R/elbv2_service.R | 6 R/globalaccelerator_interfaces.R | 303 +-- R/globalaccelerator_operations.R | 170 + R/globalaccelerator_service.R | 4 R/networkfirewall_interfaces.R | 534 ++--- R/networkfirewall_operations.R | 492 ++++- R/networkfirewall_service.R | 12 R/networkmanager_interfaces.R | 570 ++---- R/networkmanager_operations.R | 285 ++- R/networkmanager_service.R | 6 R/route53_interfaces.R | 426 +--- R/route53_operations.R | 219 +- R/route53_service.R | 4 R/route53domains_interfaces.R | 198 -- R/route53domains_operations.R | 102 - R/route53domains_service.R | 4 R/route53profiles_interfaces.R | 96 - R/route53profiles_operations.R | 48 R/route53profiles_service.R | 6 R/route53recoverycluster_interfaces.R | 24 R/route53recoverycluster_operations.R | 12 R/route53recoverycluster_service.R | 4 R/route53recoverycontrolconfig_interfaces.R | 150 - R/route53recoverycontrolconfig_operations.R | 75 R/route53recoverycontrolconfig_service.R | 4 R/route53recoveryreadiness_interfaces.R | 177 - R/route53recoveryreadiness_operations.R | 96 - R/route53recoveryreadiness_service.R | 4 R/route53resolver_interfaces.R | 448 +--- R/route53resolver_operations.R | 400 +++- R/route53resolver_service.R | 12 R/servicediscovery_interfaces.R | 177 - R/servicediscovery_operations.R | 90 R/servicediscovery_service.R | 6 R/sysdata.rda |only R/telconetworkbuilder_interfaces.R | 186 -- R/telconetworkbuilder_operations.R | 99 - R/telconetworkbuilder_service.R | 4 R/vpclattice_interfaces.R | 438 +--- R/vpclattice_operations.R | 251 +- R/vpclattice_service.R | 4 man/apigateway.Rd | 4 man/apigatewaymanagementapi.Rd | 4 man/apigatewayv2.Rd | 4 man/appfabric.Rd | 4 man/appmesh.Rd | 4 man/arczonalshift.Rd | 4 man/backupgateway.Rd | 4 man/backupgateway_get_bandwidth_rate_limit_schedule.Rd | 2 man/backupgateway_put_bandwidth_rate_limit_schedule.Rd | 2 man/cloudfront.Rd | 4 man/cloudfrontkeyvaluestore.Rd | 4 man/directconnect.Rd | 14 man/directconnect_associate_connections_to_resiliency_group.Rd |only man/directconnect_create_connection.Rd | 5 man/directconnect_create_lag.Rd | 5 man/directconnect_create_resiliency_group.Rd |only man/directconnect_delete_bgp_peer.Rd | 13 man/directconnect_delete_resiliency_group.Rd |only man/directconnect_disassociate_connections_from_resiliency_group.Rd |only man/directconnect_get_resiliency_group.Rd |only man/directconnect_list_resiliency_group_associations.Rd |only man/directconnect_list_resiliency_groups.Rd |only man/directconnect_list_virtual_interface_routes.Rd |only man/directconnect_update_connections_billing_mode.Rd |only man/directconnect_update_resiliency_group.Rd |only man/directconnect_update_virtual_interface_attributes.Rd | 11 man/elb.Rd | 6 man/elbv2.Rd | 6 man/elbv2_create_rule.Rd | 2 man/globalaccelerator.Rd | 4 man/globalaccelerator_update_custom_routin_accele_attrib.Rd | 2 man/networkfirewall.Rd | 12 man/networkfirewall_create_container_association.Rd |only man/networkfirewall_create_firewall.Rd | 22 man/networkfirewall_delete_container_association.Rd |only man/networkfirewall_describe_container_association.Rd |only man/networkfirewall_list_container_associations.Rd |only man/networkfirewall_update_container_association.Rd |only man/networkfirewall_update_proxy_settings.Rd |only man/networkmanager.Rd | 4 man/route53.Rd | 4 man/route53_update_health_check.Rd | 6 man/route53domains.Rd | 4 man/route53profiles.Rd | 4 man/route53recoverycluster.Rd | 4 man/route53recoverycontrolconfig.Rd | 4 man/route53recoveryreadiness.Rd | 4 man/route53resolver.Rd | 10 man/route53resolver_batch_create_firewall_rule.Rd |only man/route53resolver_batch_delete_firewall_rule.Rd |only man/route53resolver_batch_update_firewall_rule.Rd |only man/route53resolver_create_firewall_rule.Rd | 27 man/route53resolver_create_resolver_endpoint.Rd | 10 man/route53resolver_delete_firewall_rule.Rd | 4 man/route53resolver_list_firewall_rule_types.Rd |only man/route53resolver_update_firewall_rule.Rd | 22 man/servicediscovery.Rd | 4 man/telconetworkbuilder.Rd | 4 man/vpclattice.Rd | 4 man/vpclattice_create_resource_configuration.Rd | 8 man/vpclattice_create_resource_gateway.Rd | 4 man/vpclattice_create_service.Rd | 5 man/vpclattice_update_service.Rd | 5 man/vpclattice_update_service_network_vpc_association.Rd | 10 tests/testthat.R |only tests/testthat/test_apigateway.R | 2 tests/testthat/test_apigatewaymanagementapi.R | 2 tests/testthat/test_apigatewayv2.R | 6 tests/testthat/test_appfabric.R | 3 tests/testthat/test_appmesh.R | 3 tests/testthat/test_arczonalshift.R | 5 tests/testthat/test_backupgateway.R | 8 tests/testthat/test_cloudfront.R | 25 tests/testthat/test_cloudfrontkeyvaluestore.R | 2 tests/testthat/test_directconnect.R | 2 tests/testthat/test_elb.R | 6 tests/testthat/test_elbv2.R | 7 tests/testthat/test_globalaccelerator.R | 2 tests/testthat/test_networkfirewall.R | 46 tests/testthat/test_networkmanager.R | 14 tests/testthat/test_route53.R | 13 tests/testthat/test_route53domains.R | 5 tests/testthat/test_route53profiles.R | 6 tests/testthat/test_route53recoverycluster.R | 4 tests/testthat/test_route53recoverycontrolconfig.R | 6 tests/testthat/test_route53recoveryreadiness.R | 14 tests/testthat/test_route53resolver.R | 36 tests/testthat/test_servicediscovery.R | 8 tests/testthat/test_telconetworkbuilder.R | 7 tests/testthat/test_vpclattice.R | 11 169 files changed, 6730 insertions(+), 6468 deletions(-)
More information about paws.networking at CRAN
Permanent link
Title: 'Amazon Web Services' Management & Governance Services
Description: Interface to 'Amazon Web Services' management and governance
services, including 'CloudWatch' application and infrastructure
monitoring, 'Auto Scaling' for automatically scaling resources, and
more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.management versions 0.10.0 dated 2026-05-30 and 0.11.0 dated 2026-10-07
DESCRIPTION | 11 MD5 | 681 +++---- NAMESPACE | 36 R/applicationautoscaling_interfaces.R | 84 R/applicationautoscaling_operations.R | 42 R/applicationautoscaling_service.R | 4 R/applicationcostprofiler_interfaces.R | 36 R/applicationcostprofiler_operations.R | 18 R/applicationcostprofiler_service.R | 4 R/applicationinsights_interfaces.R | 198 -- R/applicationinsights_operations.R | 99 - R/applicationinsights_service.R | 8 R/appregistry_interfaces.R | 138 - R/appregistry_operations.R | 72 R/appregistry_service.R | 4 R/auditmanager_interfaces.R | 372 +-- R/auditmanager_operations.R | 186 + R/auditmanager_service.R | 4 R/autoscaling_interfaces.R | 315 +-- R/autoscaling_operations.R | 219 +- R/autoscaling_service.R | 4 R/autoscalingplans_interfaces.R | 36 R/autoscalingplans_operations.R | 18 R/autoscalingplans_service.R | 4 R/cloudformation_interfaces.R | 522 +---- R/cloudformation_operations.R | 316 ++- R/cloudformation_service.R | 6 R/cloudtrail_interfaces.R | 360 +-- R/cloudtrail_operations.R | 372 ++- R/cloudtrail_service.R | 70 R/cloudtraildataservice_interfaces.R | 6 R/cloudtraildataservice_operations.R | 3 R/cloudtraildataservice_service.R | 4 R/cloudwatch_interfaces.R | 338 +-- R/cloudwatch_operations.R | 571 +++++- R/cloudwatch_service.R | 51 R/cloudwatchapplicationsignals_interfaces.R | 205 +- R/cloudwatchapplicationsignals_operations.R | 337 +++ R/cloudwatchapplicationsignals_service.R | 13 R/cloudwatchinternetmonitor_interfaces.R | 96 - R/cloudwatchinternetmonitor_operations.R | 48 R/cloudwatchinternetmonitor_service.R | 6 R/cloudwatchlogs_interfaces.R | 624 ++---- R/cloudwatchlogs_operations.R | 653 +++++- R/cloudwatchlogs_service.R | 21 R/cloudwatchobservabilityaccessmanager_interfaces.R | 90 R/cloudwatchobservabilityaccessmanager_operations.R | 45 R/cloudwatchobservabilityaccessmanager_service.R | 4 R/cloudwatchrum_interfaces.R | 120 - R/cloudwatchrum_operations.R | 60 R/cloudwatchrum_service.R | 4 R/configservice_interfaces.R | 571 ++---- R/configservice_operations.R | 493 ++++- R/configservice_service.R | 9 R/controltower_interfaces.R | 168 - R/controltower_operations.R | 94 - R/controltower_service.R | 4 R/finspace_interfaces.R | 300 +-- R/finspace_operations.R | 150 + R/finspace_service.R | 4 R/health_interfaces.R | 79 R/health_operations.R | 78 R/health_service.R | 5 R/licensemanager_interfaces.R | 372 +-- R/licensemanager_operations.R | 193 +- R/licensemanager_service.R | 4 R/licensemanagerlinuxsubscriptions_interfaces.R | 66 R/licensemanagerlinuxsubscriptions_operations.R | 33 R/licensemanagerlinuxsubscriptions_service.R | 4 R/licensemanagerusersubscriptions_interfaces.R | 102 - R/licensemanagerusersubscriptions_operations.R | 63 R/licensemanagerusersubscriptions_service.R | 4 R/managedgrafana_interfaces.R | 150 - R/managedgrafana_operations.R | 75 R/managedgrafana_service.R | 4 R/organizations_interfaces.R | 315 +-- R/organizations_operations.R | 205 +- R/organizations_service.R | 30 R/pi_interfaces.R | 84 R/pi_operations.R | 42 R/pi_service.R | 12 R/prometheusservice_interfaces.R | 237 -- R/prometheusservice_operations.R | 156 + R/prometheusservice_service.R | 6 R/resiliencehub_interfaces.R | 378 +--- R/resiliencehub_operations.R | 189 +- R/resiliencehub_service.R | 6 R/resourcegroups_interfaces.R | 132 - R/resourcegroups_operations.R | 69 R/resourcegroups_service.R | 4 R/resourcegroupstaggingapi_interfaces.R | 54 R/resourcegroupstaggingapi_operations.R | 35 R/resourcegroupstaggingapi_service.R | 4 R/servicecatalog_interfaces.R | 540 +---- R/servicecatalog_operations.R | 270 +- R/servicecatalog_service.R | 4 R/servicequotas_interfaces.R | 156 - R/servicequotas_operations.R | 78 R/servicequotas_service.R | 4 R/ssm_interfaces.R | 936 +++------- R/ssm_operations.R | 661 +++++-- R/ssm_service.R | 18 R/ssmcontacts_interfaces.R | 234 -- R/ssmcontacts_operations.R | 117 - R/ssmcontacts_service.R | 4 R/ssmincidents_interfaces.R | 186 - R/ssmincidents_operations.R | 93 R/ssmincidents_service.R | 6 R/ssmsap_interfaces.R | 162 - R/ssmsap_operations.R | 81 R/ssmsap_service.R | 6 R/support_interfaces.R | 136 - R/support_operations.R | 279 ++ R/support_service.R | 14 R/supportapp_interfaces.R | 60 R/supportapp_operations.R | 30 R/supportapp_service.R | 4 R/synthetics_interfaces.R | 132 - R/synthetics_operations.R | 79 R/synthetics_service.R | 6 R/sysdata.rda |only man/applicationautoscaling.Rd | 4 man/applicationcostprofiler.Rd | 4 man/applicationinsights.Rd | 4 man/appregistry.Rd | 4 man/auditmanager.Rd | 4 man/autoscaling.Rd | 4 man/autoscaling_create_auto_scaling_group.Rd | 7 man/autoscaling_create_launch_configuration.Rd | 2 man/autoscaling_terminate_instance_in_auto_scaling_group.Rd | 12 man/autoscaling_update_auto_scaling_group.Rd | 4 man/autoscalingplans.Rd | 4 man/cloudformation.Rd | 6 man/cloudformation_create_change_set.Rd | 10 man/cloudformation_create_stack.Rd | 10 man/cloudformation_delete_stack.Rd | 5 man/cloudformation_describe_events.Rd | 2 man/cloudformation_register_type.Rd | 2 man/cloudformation_rollback_stack.Rd | 5 man/cloudformation_signal_resource.Rd | 2 man/cloudformation_test_type.Rd | 2 man/cloudformation_update_stack.Rd | 10 man/cloudtrail.Rd | 70 man/cloudtrail_cancel_query.Rd | 6 man/cloudtrail_create_channel.Rd | 6 man/cloudtrail_create_dashboard.Rd | 5 man/cloudtrail_create_event_data_store.Rd | 5 man/cloudtrail_create_trail.Rd | 7 man/cloudtrail_delete_channel.Rd | 5 man/cloudtrail_delete_dashboard.Rd | 5 man/cloudtrail_delete_event_data_store.Rd | 6 man/cloudtrail_describe_query.Rd | 6 man/cloudtrail_disable_federation.Rd | 5 man/cloudtrail_enable_federation.Rd | 5 man/cloudtrail_generate_query.Rd | 5 man/cloudtrail_get_channel.Rd | 5 man/cloudtrail_get_dashboard.Rd | 5 man/cloudtrail_get_event_data_store.Rd | 6 man/cloudtrail_get_import.Rd | 5 man/cloudtrail_get_query_results.Rd | 5 man/cloudtrail_list_channels.Rd | 5 man/cloudtrail_list_dashboards.Rd | 6 man/cloudtrail_list_event_data_stores.Rd | 6 man/cloudtrail_list_import_failures.Rd | 5 man/cloudtrail_list_imports.Rd | 6 man/cloudtrail_list_queries.Rd | 5 man/cloudtrail_restore_event_data_store.Rd | 6 man/cloudtrail_search_sample_queries.Rd | 6 man/cloudtrail_start_dashboard_refresh.Rd | 5 man/cloudtrail_start_event_data_store_ingestion.Rd | 6 man/cloudtrail_start_import.Rd | 6 man/cloudtrail_start_query.Rd | 5 man/cloudtrail_stop_event_data_store_ingestion.Rd | 6 man/cloudtrail_stop_import.Rd | 5 man/cloudtrail_update_channel.Rd | 5 man/cloudtrail_update_dashboard.Rd | 5 man/cloudtrail_update_event_data_store.Rd | 5 man/cloudtrail_update_trail.Rd | 7 man/cloudtraildataservice.Rd | 4 man/cloudwatch.Rd | 51 man/cloudwatch_associate_dataset_kms_key.Rd |only man/cloudwatch_create_resource_metrics_configuration.Rd |only man/cloudwatch_delete_alarms.Rd | 2 man/cloudwatch_delete_anomaly_detector.Rd | 3 man/cloudwatch_delete_resource_metrics_configuration.Rd |only man/cloudwatch_describe_alarm_history.Rd | 2 man/cloudwatch_describe_alarms.Rd | 8 man/cloudwatch_describe_anomaly_detectors.Rd | 3 man/cloudwatch_disassociate_dataset_kms_key.Rd |only man/cloudwatch_get_dataset.Rd |only man/cloudwatch_get_resource_metrics_configuration.Rd |only man/cloudwatch_list_tags_for_resource.Rd | 2 man/cloudwatch_put_log_alarm.Rd |only man/cloudwatch_put_metric_alarm.Rd | 14 man/cloudwatch_put_metric_stream.Rd | 2 man/cloudwatch_start_o_tel_enrichment.Rd | 13 man/cloudwatch_tag_resource.Rd | 2 man/cloudwatch_untag_resource.Rd | 2 man/cloudwatch_update_o_tel_enrichment.Rd |only man/cloudwatch_update_resource_metrics_configuration.Rd |only man/cloudwatchapplicationsignals.Rd | 13 man/cloudwatchapplicationsignals_batc_dele_inst_conf.Rd |only man/cloudwatchapplicationsignals_crea_inst_conf.Rd |only man/cloudwatchapplicationsignals_dele_inst_conf.Rd |only man/cloudwatchapplicationsignals_get_inst_conf.Rd |only man/cloudwatchapplicationsignals_get_inst_conf_stat.Rd |only man/cloudwatchapplicationsignals_list_inst_conf.Rd |only man/cloudwatchapplicationsignals_list_tags_for_resource.Rd | 2 man/cloudwatchapplicationsignals_repo_inst_conf_stat.Rd |only man/cloudwatchapplicationsignals_tag_resource.Rd | 2 man/cloudwatchapplicationsignals_untag_resource.Rd | 2 man/cloudwatchinternetmonitor.Rd | 4 man/cloudwatchlogs.Rd | 19 man/cloudwatchlogs_create_lookup_table.Rd | 16 man/cloudwatchlogs_create_scheduled_query.Rd | 7 man/cloudwatchlogs_delete_syslog_configuration.Rd |only man/cloudwatchlogs_describe_field_indexes.Rd | 23 man/cloudwatchlogs_filter_log_events.Rd | 11 man/cloudwatchlogs_get_log_events.Rd | 4 man/cloudwatchlogs_get_storage_tier_policy.Rd |only man/cloudwatchlogs_list_scheduled_queries.Rd | 5 man/cloudwatchlogs_list_syslog_configurations.Rd |only man/cloudwatchlogs_put_account_policy.Rd | 2 man/cloudwatchlogs_put_delivery_destination.Rd | 3 man/cloudwatchlogs_put_delivery_source.Rd | 36 man/cloudwatchlogs_put_storage_tier_policy.Rd |only man/cloudwatchlogs_put_subscription_filter.Rd | 2 man/cloudwatchlogs_put_syslog_configuration.Rd |only man/cloudwatchlogs_start_query.Rd | 4 man/cloudwatchlogs_update_lookup_table.Rd | 16 man/cloudwatchlogs_update_scheduled_query.Rd | 3 man/cloudwatchobservabilityaccessmanager.Rd | 4 man/cloudwatchrum.Rd | 4 man/configservice.Rd | 9 man/configservice_delete_connector.Rd |only man/configservice_delete_service_linked_configuration_recorder.Rd | 9 man/configservice_describe_config_rules.Rd | 8 man/configservice_describe_configuration_recorder_status.Rd | 2 man/configservice_describe_configuration_recorders.Rd | 2 man/configservice_get_connector.Rd |only man/configservice_list_connectors.Rd |only man/configservice_list_tags_for_resource.Rd | 1 man/configservice_put_connector.Rd |only man/configservice_put_organization_config_rule.Rd | 5 man/configservice_put_organization_conformance_pack.Rd | 5 man/configservice_put_third_party_servi_linke_confi_recor.Rd |only man/configservice_tag_resource.Rd | 1 man/configservice_untag_resource.Rd | 1 man/controltower.Rd | 4 man/controltower_list_enabled_controls.Rd | 10 man/finspace.Rd | 4 man/health.Rd | 5 man/health_describe_service_lifecycle.Rd |only man/licensemanager.Rd | 4 man/licensemanager_checkout_borrow_license.Rd | 2 man/licensemanager_create_license_version.Rd | 5 man/licensemanagerlinuxsubscriptions.Rd | 4 man/licensemanagerusersubscriptions.Rd | 4 man/licensemanagerusersubscriptions_deregister_identity_provider.Rd | 2 man/licensemanagerusersubscriptions_list_product_subscriptions.Rd | 2 man/licensemanagerusersubscriptions_register_identity_provider.Rd | 2 man/licensemanagerusersubscriptions_start_product_subscription.Rd | 2 man/licensemanagerusersubscriptions_stop_product_subscription.Rd | 2 man/licensemanagerusersubscriptions_upd_ide_pro_set.Rd | 2 man/managedgrafana.Rd | 4 man/organizations.Rd | 30 man/organizations_create_policy.Rd | 1 man/organizations_describe_effective_policy.Rd | 1 man/organizations_disable_policy_type.Rd | 1 man/organizations_enable_policy_type.Rd | 1 man/organizations_list_accounts_with_invalid_effective_policy.Rd | 1 man/organizations_list_effective_policy_validation_errors.Rd | 1 man/organizations_list_policies.Rd | 1 man/organizations_list_policies_for_target.Rd | 1 man/pi.Rd | 4 man/prometheusservice.Rd | 6 man/prometheusservice_create_scraper.Rd | 11 man/prometheusservice_update_scraper.Rd | 7 man/prometheusservice_update_workspace_configuration.Rd | 8 man/resiliencehub.Rd | 4 man/resourcegroups.Rd | 4 man/resourcegroupstaggingapi.Rd | 4 man/resourcegroupstaggingapi_get_compliance_summary.Rd | 4 man/resourcegroupstaggingapi_get_resources.Rd | 2 man/servicecatalog.Rd | 4 man/servicequotas.Rd | 4 man/ssm.Rd | 12 man/ssm_create_association.Rd | 2 man/ssm_create_cloud_connector.Rd |only man/ssm_delete_cloud_connector.Rd |only man/ssm_delete_resource_policy.Rd | 13 man/ssm_get_cloud_connector.Rd |only man/ssm_get_patch_baseline_for_patch_group.Rd | 2 man/ssm_list_cloud_connectors.Rd |only man/ssm_update_association.Rd | 2 man/ssm_update_cloud_connector.Rd |only man/ssm_update_document.Rd | 2 man/ssm_validate_cloud_connector.Rd |only man/ssmcontacts.Rd | 4 man/ssmincidents.Rd | 4 man/ssmsap.Rd | 4 man/support.Rd | 14 man/support_add_attachments_to_set.Rd | 8 man/support_add_communication_to_case.Rd | 16 man/support_complete_attachment_upload.Rd |only man/support_create_case.Rd | 12 man/support_describe_attachment.Rd | 8 man/support_describe_attachment_upload_status.Rd |only man/support_describe_cases.Rd | 11 man/support_describe_communications.Rd | 11 man/support_describe_create_case_options.Rd | 7 man/support_describe_services.Rd | 10 man/support_describe_severity_levels.Rd | 6 man/support_describe_supported_languages.Rd | 9 man/support_get_attachment_download_link.Rd |only man/support_get_attachment_upload_links.Rd |only man/support_resolve_case.Rd | 6 man/supportapp.Rd | 4 man/synthetics.Rd | 4 man/synthetics_create_canary.Rd | 8 man/synthetics_update_canary.Rd | 11 tests/testthat.R |only tests/testthat/test_applicationautoscaling.R | 2 tests/testthat/test_applicationcostprofiler.R | 3 tests/testthat/test_applicationinsights.R | 8 tests/testthat/test_appregistry.R | 4 tests/testthat/test_auditmanager.R | 6 tests/testthat/test_autoscaling.R | 17 tests/testthat/test_autoscalingplans.R | 4 tests/testthat/test_cloudformation.R | 25 tests/testthat/test_cloudtrail.R | 14 tests/testthat/test_cloudtraildataservice.R | 2 tests/testthat/test_cloudwatch.R | 13 tests/testthat/test_cloudwatchapplicationsignals.R | 5 tests/testthat/test_cloudwatchinternetmonitor.R | 6 tests/testthat/test_cloudwatchlogs.R | 26 tests/testthat/test_cloudwatchobservabilityaccessmanager.R | 6 tests/testthat/test_cloudwatchrum.R | 4 tests/testthat/test_configservice.R | 36 tests/testthat/test_controltower.R | 8 tests/testthat/test_finspace.R | 4 tests/testthat/test_health.R | 2 tests/testthat/test_licensemanager.R | 2 tests/testthat/test_licensemanagerlinuxsubscriptions.R | 8 tests/testthat/test_licensemanagerusersubscriptions.R | 8 tests/testthat/test_managedgrafana.R | 4 tests/testthat/test_organizations.R | 2 tests/testthat/test_pi.R | 2 tests/testthat/test_prometheusservice.R | 4 tests/testthat/test_resiliencehub.R | 9 tests/testthat/test_resourcegroups.R | 8 tests/testthat/test_resourcegroupstaggingapi.R | 5 tests/testthat/test_servicecatalog.R | 12 tests/testthat/test_servicequotas.R | 8 tests/testthat/test_ssm.R | 54 tests/testthat/test_ssmcontacts.R | 8 tests/testthat/test_ssmincidents.R | 5 tests/testthat/test_ssmsap.R | 10 tests/testthat/test_support.R | 2 tests/testthat/test_supportapp.R | 4 tests/testthat/test_synthetics.R | 10 361 files changed, 9843 insertions(+), 8384 deletions(-)
More information about paws.management at CRAN
Permanent link
Title: 'Amazon Web Services' End User Computing Services
Description: Interface to 'Amazon Web Services' end user computing
services, including collaborative document editing, mobile intranet,
and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.end.user.computing versions 0.10.0 dated 2026-05-30 and 0.11.0 dated 2026-10-07
DESCRIPTION | 11 MD5 | 114 ++-- NAMESPACE | 36 - R/appstream_interfaces.R | 534 ++++++------------- R/appstream_operations.R | 276 ++++++---- R/appstream_service.R | 6 R/chatbot_interfaces.R | 204 ++----- R/chatbot_operations.R | 102 ++- R/chatbot_service.R | 4 R/ivschat_interfaces.R | 96 +-- R/ivschat_operations.R | 51 + R/ivschat_service.R | 6 R/sysdata.rda |only R/workdocs_interfaces.R | 219 ++----- R/workdocs_operations.R | 134 +++- R/workdocs_service.R | 4 R/workmail_interfaces.R | 552 ++++++-------------- R/workmail_operations.R | 276 ++++++---- R/workmail_service.R | 4 R/workmailmessageflow_interfaces.R | 12 R/workmailmessageflow_operations.R | 6 R/workmailmessageflow_service.R | 4 R/workspaces_interfaces.R | 546 ++++++------------- R/workspaces_operations.R | 335 +++++++----- R/workspaces_service.R | 28 - R/workspacesweb_interfaces.R | 450 +++++----------- R/workspacesweb_operations.R | 225 +++++--- R/workspacesweb_service.R | 4 man/appstream.Rd | 4 man/appstream_create_imported_image.Rd | 11 man/chatbot.Rd | 4 man/ivschat.Rd | 6 man/workdocs.Rd | 4 man/workdocs_search_resources.Rd | 2 man/workmail.Rd | 4 man/workmailmessageflow.Rd | 4 man/workspaces.Rd | 28 - man/workspaces_create_connect_client_add_in.Rd | 6 man/workspaces_create_workspaces_pool.Rd | 5 man/workspaces_delete_connect_client_add_in.Rd | 4 man/workspaces_describe_connect_client_add_ins.Rd | 5 man/workspaces_describe_workspaces_pool_sessions.Rd | 6 man/workspaces_describe_workspaces_pools.Rd | 5 man/workspaces_start_workspaces_pool.Rd | 5 man/workspaces_stop_workspaces_pool.Rd | 5 man/workspaces_terminate_workspaces_pool.Rd | 5 man/workspaces_terminate_workspaces_pool_session.Rd | 5 man/workspaces_update_connect_client_add_in.Rd | 6 man/workspaces_update_workspaces_pool.Rd | 5 man/workspacesweb.Rd | 4 tests/testthat.R |only tests/testthat/test_appstream.R | 24 tests/testthat/test_chatbot.R | 18 tests/testthat/test_ivschat.R | 4 tests/testthat/test_workdocs.R | 2 tests/testthat/test_workmail.R | 4 tests/testthat/test_workmailmessageflow.R | 2 tests/testthat/test_workspaces.R | 2 tests/testthat/test_workspacesweb.R | 11 59 files changed, 2060 insertions(+), 2379 deletions(-)
More information about paws.end.user.computing at CRAN
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Title: 'Amazon Web Services' Developer Tools Services
Description: Interface to 'Amazon Web Services' developer tools services,
including version control, continuous integration and deployment, and
more <https://aws.amazon.com/products/developer-tools/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.developer.tools versions 0.10.0 dated 2026-05-30 and 0.11.0 dated 2026-10-07
DESCRIPTION | 11 MD5 | 256 +- NAMESPACE | 36 R/cloud9_interfaces.R | 78 R/cloud9_operations.R | 47 R/cloud9_service.R | 4 R/cloudcontrolapi_interfaces.R | 48 R/cloudcontrolapi_operations.R | 24 R/cloudcontrolapi_service.R | 6 R/codeartifact_interfaces.R | 288 +-- R/codeartifact_operations.R | 144 + R/codeartifact_service.R | 4 R/codebuild_interfaces.R | 354 +-- R/codebuild_operations.R | 182 + R/codebuild_service.R | 6 R/codecatalyst_interfaces.R | 225 -- R/codecatalyst_operations.R | 120 - R/codecatalyst_service.R | 4 R/codecommit_interfaces.R | 451 +--- R/codecommit_operations.R | 278 ++ R/codecommit_service.R | 7 R/codeconnections_interfaces.R | 162 - R/codeconnections_operations.R | 81 R/codeconnections_service.R | 4 R/codedeploy_interfaces.R | 252 -- R/codedeploy_operations.R | 158 + R/codedeploy_service.R | 4 R/codeguruprofiler_interfaces.R | 138 - R/codeguruprofiler_operations.R | 69 R/codeguruprofiler_service.R | 4 R/codegurureviewer_interfaces.R | 84 R/codegurureviewer_operations.R | 42 R/codegurureviewer_service.R | 6 R/codegurusecurity_interfaces.R | 78 R/codegurusecurity_operations.R | 39 R/codegurusecurity_service.R | 4 R/codepipeline_interfaces.R | 234 -- R/codepipeline_operations.R | 132 - R/codepipeline_service.R | 4 R/codestarconnections_interfaces.R | 162 - R/codestarconnections_operations.R | 81 R/codestarconnections_service.R | 4 R/codestarnotifications_interfaces.R | 78 R/codestarnotifications_operations.R | 39 R/codestarnotifications_service.R | 4 R/devopsguru_interfaces.R | 186 - R/devopsguru_operations.R | 93 R/devopsguru_service.R | 4 R/drs_interfaces.R | 482 +++-- R/drs_operations.R | 834 ++++++++ R/drs_service.R | 24 R/fis_interfaces.R | 156 - R/fis_operations.R | 78 R/fis_service.R | 4 R/sysdata.rda |only R/wellarchitected_interfaces.R | 608 +++--- R/wellarchitected_operations.R | 1030 ++++++++++- R/wellarchitected_service.R | 37 R/xray_interfaces.R | 228 -- R/xray_operations.R | 114 - R/xray_service.R | 4 man/cloud9.Rd | 4 man/cloud9_create_environment_ec2.Rd | 4 man/cloudcontrolapi.Rd | 4 man/codeartifact.Rd | 4 man/codebuild.Rd | 6 man/codebuild_start_build.Rd | 5 man/codecatalyst.Rd | 4 man/codecatalyst_create_access_token.Rd | 2 man/codecatalyst_list_event_logs.Rd | 4 man/codecommit.Rd | 6 man/codecommit_get_blob_differences.Rd |only man/codeconnections.Rd | 4 man/codedeploy.Rd | 4 man/codedeploy_create_deployment.Rd | 14 man/codeguruprofiler.Rd | 4 man/codegurureviewer.Rd | 6 man/codegurusecurity.Rd | 4 man/codepipeline.Rd | 4 man/codestarconnections.Rd | 4 man/codestarnotifications.Rd | 4 man/devopsguru.Rd | 4 man/drs.Rd | 24 man/drs_cancel_recovery_plan_execution.Rd |only man/drs_create_launch_configuration_template.Rd | 5 man/drs_create_recovery_plan.Rd |only man/drs_create_recovery_plan_step.Rd |only man/drs_delete_recovery_plan.Rd |only man/drs_delete_recovery_plan_execution.Rd |only man/drs_delete_recovery_plan_step.Rd |only man/drs_get_recovery_plan.Rd |only man/drs_get_recovery_plan_execution.Rd |only man/drs_get_recovery_plan_execution_step.Rd |only man/drs_get_recovery_plan_step.Rd |only man/drs_list_recovery_plan_execution_steps.Rd |only man/drs_list_recovery_plan_executions.Rd |only man/drs_list_recovery_plan_steps.Rd |only man/drs_list_recovery_plans.Rd |only man/drs_reorder_recovery_plan_steps.Rd |only man/drs_retry_recovery_plan_execution_step.Rd |only man/drs_start_recovery_plan_execution.Rd |only man/drs_update_launch_configuration.Rd | 5 man/drs_update_launch_configuration_template.Rd | 5 man/drs_update_recovery_plan.Rd |only man/drs_update_recovery_plan_execution_step.Rd |only man/drs_update_recovery_plan_step.Rd |only man/fis.Rd | 4 man/wellarchitected.Rd | 35 man/wellarchitected_create_agent_context.Rd |only man/wellarchitected_create_agent_goal.Rd |only man/wellarchitected_create_agent_profile.Rd |only man/wellarchitected_delete_agent_context.Rd |only man/wellarchitected_delete_agent_goal.Rd |only man/wellarchitected_delete_agent_profile.Rd |only man/wellarchitected_get_agent_context.Rd |only man/wellarchitected_get_agent_goal.Rd |only man/wellarchitected_get_agent_profile.Rd |only man/wellarchitected_get_agent_recommendation.Rd |only man/wellarchitected_get_agent_recommendation_generation.Rd |only man/wellarchitected_list_agent_contexts.Rd |only man/wellarchitected_list_agent_goals.Rd |only man/wellarchitected_list_agent_profiles.Rd |only man/wellarchitected_list_agent_recommendation_generations.Rd |only man/wellarchitected_list_agent_recommendation_items.Rd |only man/wellarchitected_list_agent_recommendations.Rd |only man/wellarchitected_put_agent_recommendation_feedback.Rd |only man/wellarchitected_start_agent_recommendation_generation.Rd |only man/wellarchitected_update_agent_context.Rd |only man/wellarchitected_update_agent_goal.Rd |only man/wellarchitected_update_agent_profile.Rd |only man/wellarchitected_update_agent_recommendation_status.Rd |only man/xray.Rd | 4 tests/testthat.R |only tests/testthat/test_cloud9.R | 4 tests/testthat/test_cloudcontrolapi.R | 4 tests/testthat/test_codeartifact.R | 4 tests/testthat/test_codebuild.R | 14 tests/testthat/test_codecatalyst.R | 4 tests/testthat/test_codecommit.R | 4 tests/testthat/test_codeconnections.R | 8 tests/testthat/test_codedeploy.R | 7 tests/testthat/test_codeguruprofiler.R | 3 tests/testthat/test_codegurureviewer.R | 4 tests/testthat/test_codegurusecurity.R | 3 tests/testthat/test_codepipeline.R | 7 tests/testthat/test_codestarconnections.R | 8 tests/testthat/test_codestarnotifications.R | 8 tests/testthat/test_devopsguru.R | 10 tests/testthat/test_drs.R | 19 tests/testthat/test_fis.R | 6 tests/testthat/test_wellarchitected.R | 21 tests/testthat/test_xray.R | 3 152 files changed, 5171 insertions(+), 3465 deletions(-)
More information about paws.developer.tools at CRAN
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Title: 'Amazon Web Services' Database Services
Description: Interface to 'Amazon Web Services' database services,
including 'Relational Database Service' ('RDS'), 'DynamoDB' 'NoSQL'
database, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.database versions 0.10.0 dated 2026-06-01 and 0.11.0 dated 2026-10-07
DESCRIPTION | 11 MD5 | 332 ++-- NAMESPACE | 36 R/dax_interfaces.R | 126 - R/dax_operations.R | 63 R/dax_service.R | 4 R/docdb_interfaces.R | 318 +--- R/docdb_operations.R | 185 +- R/docdb_service.R | 4 R/docdbelastic_interfaces.R | 114 - R/docdbelastic_operations.R | 57 R/docdbelastic_service.R | 4 R/dynamodb_interfaces.R | 346 +--- R/dynamodb_operations.R | 276 ++- R/dynamodb_service.R | 5 R/dynamodbstreams_interfaces.R | 24 R/dynamodbstreams_operations.R | 12 R/dynamodbstreams_service.R | 4 R/elasticache_interfaces.R | 441 ++---- R/elasticache_operations.R | 267 ++- R/elasticache_service.R | 4 R/keyspaces_interfaces.R | 114 - R/keyspaces_operations.R | 57 R/keyspaces_service.R | 4 R/lakeformation_interfaces.R | 366 +---- R/lakeformation_operations.R | 183 +- R/lakeformation_service.R | 6 R/memorydb_interfaces.R | 270 +-- R/memorydb_operations.R | 135 + R/memorydb_service.R | 4 R/neptune_interfaces.R | 399 +---- R/neptune_operations.R | 262 ++- R/neptune_service.R | 4 R/neptunedata_interfaces.R | 243 +-- R/neptunedata_operations.R | 129 + R/neptunedata_service.R | 4 R/rds_interfaces.R | 951 ++++--------- R/rds_operations.R | 667 ++++++--- R/rds_service.R | 4 R/rdsdataservice_interfaces.R | 36 R/rdsdataservice_operations.R | 22 R/rdsdataservice_service.R | 8 R/redshift_interfaces.R | 834 ++++------- R/redshift_operations.R | 581 +++++-- R/redshift_service.R | 8 R/redshiftdataapiservice_interfaces.R | 76 - R/redshiftdataapiservice_operations.R | 112 + R/redshiftdataapiservice_service.R | 5 R/redshiftserverless_interfaces.R | 390 +---- R/redshiftserverless_operations.R | 232 ++- R/redshiftserverless_service.R | 4 R/simpledb_interfaces.R | 42 R/simpledb_operations.R | 30 R/simpledb_service.R | 4 R/sysdata.rda |only R/timestreamquery_interfaces.R | 81 - R/timestreamquery_operations.R | 45 R/timestreamquery_service.R | 4 R/timestreamwrite_interfaces.R | 108 - R/timestreamwrite_operations.R | 57 R/timestreamwrite_service.R | 4 man/dax.Rd | 4 man/docdb.Rd | 4 man/docdb_create_db_cluster.Rd | 5 man/docdb_modify_db_cluster.Rd | 5 man/docdb_restore_db_cluster_from_snapshot.Rd | 5 man/docdb_restore_db_cluster_to_point_in_time.Rd | 5 man/docdbelastic.Rd | 4 man/dynamodb.Rd | 5 man/dynamodb_create_table.Rd | 13 man/dynamodb_export_table_to_point_in_time.Rd | 5 man/dynamodb_put_item.Rd | 7 man/dynamodb_restore_table_from_backup.Rd | 5 man/dynamodb_restore_table_to_point_in_time.Rd | 9 man/dynamodb_search_vectors.Rd |only man/dynamodb_update_table.Rd | 7 man/dynamodbstreams.Rd | 4 man/elasticache.Rd | 4 man/elasticache_add_tags_to_resource.Rd | 2 man/elasticache_create_cache_cluster.Rd | 2 man/elasticache_create_global_replication_group.Rd | 5 man/elasticache_create_replication_group.Rd | 13 man/elasticache_create_serverless_cache.Rd | 7 man/elasticache_modify_cache_cluster.Rd | 4 man/elasticache_modify_replication_group.Rd | 7 man/elasticache_remove_tags_from_resource.Rd | 2 man/keyspaces.Rd | 4 man/lakeformation.Rd | 4 man/memorydb.Rd | 4 man/neptune.Rd | 4 man/neptune_copy_db_cluster_parameter_group.Rd | 4 man/neptune_copy_db_parameter_group.Rd | 1 man/neptune_create_db_cluster.Rd | 13 man/neptune_modify_db_cluster.Rd | 11 man/neptune_restore_db_cluster_from_snapshot.Rd | 11 man/neptune_restore_db_cluster_to_point_in_time.Rd | 11 man/neptunedata.Rd | 4 man/rds.Rd | 4 man/rds_copy_db_cluster_snapshot.Rd | 2 man/rds_copy_db_snapshot.Rd | 2 man/rds_create_blue_green_deployment.Rd | 14 man/rds_create_custom_db_engine_version.Rd | 17 man/rds_create_db_cluster.Rd | 11 man/rds_create_db_instance.Rd | 7 man/rds_create_db_instance_read_replica.Rd | 4 man/rds_create_db_parameter_group.Rd | 1 man/rds_create_global_cluster.Rd | 2 man/rds_create_option_group.Rd | 1 man/rds_delete_custom_db_engine_version.Rd | 9 man/rds_describe_db_engine_versions.Rd | 2 man/rds_describe_db_major_engine_versions.Rd | 1 man/rds_describe_engine_default_parameters.Rd | 1 man/rds_describe_option_group_options.Rd | 1 man/rds_describe_option_groups.Rd | 1 man/rds_describe_orderable_db_instance_options.Rd | 1 man/rds_modify_custom_db_engine_version.Rd | 9 man/rds_modify_db_cluster.Rd | 15 man/rds_modify_db_instance.Rd | 17 man/rds_restore_db_cluster_from_s3.Rd | 7 man/rds_restore_db_cluster_from_snapshot.Rd | 9 man/rds_restore_db_cluster_to_point_in_time.Rd | 9 man/rds_restore_db_instance_from_db_snapshot.Rd | 7 man/rds_restore_db_instance_from_s3.Rd | 4 man/rds_restore_db_instance_to_point_in_time.Rd | 7 man/rds_start_db_instance_automated_backups_replication.Rd | 2 man/rdsdataservice.Rd | 8 man/rdsdataservice_execute_statement.Rd | 6 man/redshift.Rd | 8 man/redshift_create_cluster.Rd | 2 man/redshift_create_qev_2_idc_application.Rd |only man/redshift_delete_qev_2_idc_application.Rd |only man/redshift_describe_qev_2_idc_applications.Rd |only man/redshift_disable_logging.Rd | 10 man/redshift_enable_logging.Rd | 12 man/redshift_modify_cluster.Rd | 2 man/redshift_modify_qev_2_idc_application.Rd |only man/redshiftdataapiservice.Rd | 5 man/redshiftdataapiservice_batch_execute_statement.Rd | 12 man/redshiftdataapiservice_describe_statement.Rd | 4 man/redshiftdataapiservice_execute_statement.Rd | 5 man/redshiftdataapiservice_get_statement_result.Rd | 8 man/redshiftdataapiservice_get_statement_result_v2.Rd | 8 man/redshiftdataapiservice_list_databases.Rd | 4 man/redshiftdataapiservice_list_sessions.Rd |only man/redshiftserverless.Rd | 4 man/redshiftserverless_restore_from_recovery_point.Rd | 5 man/redshiftserverless_restore_from_snapshot.Rd | 5 man/redshiftserverless_update_namespace.Rd | 33 man/simpledb.Rd | 4 man/timestreamquery.Rd | 4 man/timestreamwrite.Rd | 4 tests/testthat.R |only tests/testthat/test_dax.R | 12 tests/testthat/test_docdb.R | 14 tests/testthat/test_docdbelastic.R | 5 tests/testthat/test_dynamodb.R | 12 tests/testthat/test_dynamodbstreams.R | 3 tests/testthat/test_elasticache.R | 20 tests/testthat/test_keyspaces.R | 3 tests/testthat/test_lakeformation.R | 17 tests/testthat/test_memorydb.R | 28 tests/testthat/test_neptune.R | 15 tests/testthat/test_neptunedata.R | 9 tests/testthat/test_rds.R | 36 tests/testthat/test_rdsdataservice.R | 2 tests/testthat/test_redshift.R | 41 tests/testthat/test_redshiftdataapiservice.R | 24 tests/testthat/test_redshiftserverless.R | 16 tests/testthat/test_simpledb.R | 3 tests/testthat/test_timestreamquery.R | 6 tests/testthat/test_timestreamwrite.R | 9 171 files changed, 5079 insertions(+), 4838 deletions(-)
Title: 'Amazon Web Services' Customer Engagement Services
Description: Interface to 'Amazon Web Services' customer engagement
services, including 'Simple Email Service', 'Connect' contact center
service, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.customer.engagement versions 0.10.0 dated 2026-05-30 and 0.11.0 dated 2026-10-07
DESCRIPTION | 11 MD5 | 302 - NAMESPACE | 36 R/connect_interfaces.R | 2259 +++------ R/connect_operations.R | 2406 ++++++++-- R/connect_service.R | 41 R/connectcampaignservice_interfaces.R | 96 R/connectcampaignservice_operations.R | 66 R/connectcampaignservice_service.R | 4 R/connectcampaignservicev2_interfaces.R | 150 R/connectcampaignservicev2_operations.R | 111 R/connectcampaignservicev2_service.R | 4 R/connectcases_interfaces.R | 252 - R/connectcases_operations.R | 129 R/connectcases_service.R | 4 R/connectcontactlens_interfaces.R | 6 R/connectcontactlens_operations.R | 6 R/connectcontactlens_service.R | 6 R/connectparticipant_interfaces.R | 66 R/connectparticipant_operations.R | 33 R/connectparticipant_service.R | 8 R/connectwisdomservice_interfaces.R | 246 - R/connectwisdomservice_operations.R | 123 R/connectwisdomservice_service.R | 4 R/customerprofiles_interfaces.R | 726 +-- R/customerprofiles_operations.R | 647 ++ R/customerprofiles_service.R | 13 R/pinpoint_interfaces.R | 726 +-- R/pinpoint_operations.R | 366 + R/pinpoint_service.R | 4 R/pinpointemail_interfaces.R | 252 - R/pinpointemail_operations.R | 126 R/pinpointemail_service.R | 4 R/pinpointsmsvoice_interfaces.R | 48 R/pinpointsmsvoice_operations.R | 24 R/pinpointsmsvoice_service.R | 4 R/pinpointsmsvoicev2_interfaces.R | 676 +- R/pinpointsmsvoicev2_operations.R | 500 +- R/pinpointsmsvoicev2_service.R | 10 R/ses_interfaces.R | 390 - R/ses_operations.R | 223 R/ses_service.R | 4 R/sesv2_interfaces.R | 720 +- R/sesv2_operations.R | 663 ++ R/sesv2_service.R | 24 R/sysdata.rda |only man/connect.Rd | 40 man/connect_associate_hours_of_operations.Rd | 2 man/connect_associate_routing_profile_queues.Rd | 2 man/connect_batch_get_attached_file_metadata.Rd | 2 man/connect_complete_attached_file_upload.Rd | 2 man/connect_create_attached_file.Rd |only man/connect_create_auth_code.Rd |only man/connect_create_evaluation_form.Rd | 5 man/connect_create_extraction_definition.Rd |only man/connect_create_hours_of_operation.Rd | 2 man/connect_create_hours_of_operation_override.Rd | 2 man/connect_create_metric.Rd |only man/connect_create_routing_profile.Rd | 2 man/connect_create_rule.Rd | 8 man/connect_create_security_profile.Rd | 3 man/connect_create_task_template.Rd | 10 man/connect_delete_attached_file.Rd | 2 man/connect_delete_contact_data.Rd |only man/connect_delete_extraction_definition.Rd |only man/connect_delete_metric.Rd |only man/connect_delete_session.Rd |only man/connect_describe_extraction_definition.Rd |only man/connect_describe_metric.Rd |only man/connect_disassociate_hours_of_operations.Rd | 2 man/connect_get_attached_file.Rd | 2 man/connect_get_cross_region_routing.Rd |only man/connect_get_evaluation_form_validation.Rd |only man/connect_get_metric_data_v2.Rd | 202 man/connect_list_evaluation_form_ai_versions.Rd |only man/connect_list_extraction_definitions.Rd |only man/connect_list_metrics.Rd |only man/connect_list_security_profile_ai_agents.Rd |only man/connect_replicate_instance.Rd | 4 man/connect_search_metrics.Rd |only man/connect_search_resource_tags.Rd | 1 man/connect_search_rules.Rd |only man/connect_send_outbound_web_notification.Rd |only man/connect_start_assistant_contact.Rd |only man/connect_start_attached_file_upload.Rd | 2 man/connect_start_chat_contact.Rd | 26 man/connect_start_contact_conversational_analytics_job.Rd |only man/connect_start_evaluation_form_validation.Rd |only man/connect_start_outbound_chat_contact.Rd | 2 man/connect_start_web_rtc_contact.Rd | 7 man/connect_update_contact_task_template.Rd |only man/connect_update_cross_region_routing.Rd |only man/connect_update_evaluation_form.Rd | 5 man/connect_update_extraction_definition.Rd |only man/connect_update_hours_of_operation_override.Rd | 2 man/connect_update_instance_attribute.Rd | 4 man/connect_update_metric_content.Rd |only man/connect_update_metric_metadata.Rd |only man/connect_update_notification_content.Rd | 2 man/connect_update_rule.Rd | 12 man/connect_update_security_profile.Rd | 3 man/connect_update_task_template.Rd | 14 man/connectcampaignservice.Rd | 4 man/connectcampaignservicev2.Rd | 4 man/connectcases.Rd | 4 man/connectcontactlens.Rd | 6 man/connectcontactlens_list_realtime_contact_analysis_segments.Rd | 5 man/connectparticipant.Rd | 8 man/connectwisdomservice.Rd | 4 man/customerprofiles.Rd | 13 man/customerprofiles_associate_stream_for_segments.Rd |only man/customerprofiles_batch_put_profile_object.Rd |only man/customerprofiles_delete_segment_subscription.Rd |only man/customerprofiles_disassociate_stream_for_segments.Rd |only man/customerprofiles_get_profile_recommendations.Rd | 5 man/customerprofiles_get_segment_subscription.Rd |only man/customerprofiles_get_stream_for_segments.Rd |only man/customerprofiles_list_segment_subscription_events.Rd |only man/customerprofiles_put_segment_subscription.Rd |only man/customerprofiles_search_recommendations.Rd |only man/customerprofiles_update_recommender.Rd | 5 man/pinpoint.Rd | 4 man/pinpointemail.Rd | 4 man/pinpointsmsvoice.Rd | 4 man/pinpointsmsvoicev2.Rd | 8 man/pinpointsmsvoicev2_carrier_lookup.Rd | 4 man/pinpointsmsvoicev2_create_registration_attachment.Rd | 4 man/pinpointsmsvoicev2_delete_rcs_message_spend_limit_override.Rd |only man/pinpointsmsvoicev2_list_available_phone_numbers.Rd |only man/pinpointsmsvoicev2_request_phone_number.Rd | 3 man/pinpointsmsvoicev2_request_sender_id.Rd | 2 man/pinpointsmsvoicev2_send_rcs_message.Rd |only man/pinpointsmsvoicev2_send_text_message.Rd | 2 man/pinpointsmsvoicev2_set_rcs_message_spend_limit_override.Rd |only man/pinpointsmsvoicev2_update_notify_configuration.Rd | 4 man/pinpointsmsvoicev2_update_rcs_agent.Rd | 14 man/ses.Rd | 4 man/ses_send_bulk_templated_email.Rd | 2 man/ses_send_email.Rd | 2 man/ses_send_raw_email.Rd | 4 man/ses_send_templated_email.Rd | 2 man/sesv2.Rd | 24 man/sesv2_associate_email_identity_certificate.Rd |only man/sesv2_create_configuration_set.Rd | 7 man/sesv2_create_tenant.Rd | 4 man/sesv2_delete_suppressed_destination.Rd | 11 man/sesv2_disassociate_email_identity_certificate.Rd |only man/sesv2_get_suppressed_destination.Rd | 10 man/sesv2_get_tenant.Rd | 5 man/sesv2_list_configuration_sets.Rd | 4 man/sesv2_list_email_identities.Rd | 4 man/sesv2_list_email_identity_certificates.Rd |only man/sesv2_list_suppressed_destinations.Rd | 9 man/sesv2_list_tenants.Rd | 4 man/sesv2_put_account_pricing_attributes.Rd |only man/sesv2_put_configuration_set_suppression_options.Rd | 17 man/sesv2_put_suppressed_destination.Rd | 13 man/sesv2_put_tenant_suppression_attributes.Rd |only man/sesv2_send_bulk_email.Rd | 5 man/sesv2_send_email.Rd | 5 man/sesv2_update_configuration_set.Rd |only tests/testthat.R |only tests/testthat/test_connect.R | 8 tests/testthat/test_connectcampaignservice.R | 3 tests/testthat/test_connectcampaignservicev2.R | 3 tests/testthat/test_connectcases.R | 3 tests/testthat/test_connectcontactlens.R | 2 tests/testthat/test_connectparticipant.R | 2 tests/testthat/test_connectwisdomservice.R | 4 tests/testthat/test_customerprofiles.R | 8 tests/testthat/test_pinpoint.R | 3 tests/testthat/test_pinpointemail.R | 2 tests/testthat/test_pinpointsmsvoice.R | 2 tests/testthat/test_pinpointsmsvoicev2.R | 36 tests/testthat/test_ses.R | 11 tests/testthat/test_sesv2.R | 16 176 files changed, 7528 insertions(+), 5713 deletions(-)
More information about paws.customer.engagement at CRAN
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Title: 'Amazon Web Services' Cost Management Services
Description: Interface to 'Amazon Web Services' cost management services,
including cost and usage reports, budgets, pricing, and more
<https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.cost.management versions 0.10.0 dated 2026-05-30 and 0.11.0 dated 2026-10-07
DESCRIPTION | 11 MD5 | 171 ++-- NAMESPACE | 36 R/billing_interfaces.R | 182 +++- R/billing_operations.R | 420 +++++++++- R/billing_service.R | 15 R/billingconductor_interfaces.R | 212 ++--- R/billingconductor_operations.R | 163 +++ R/billingconductor_service.R | 6 R/budgets_interfaces.R | 156 +-- R/budgets_operations.R | 78 + R/budgets_service.R | 4 R/costandusagereportservice_interfaces.R | 42 - R/costandusagereportservice_operations.R | 21 R/costandusagereportservice_service.R | 4 R/costexplorer_interfaces.R | 282 ++---- R/costexplorer_operations.R | 141 ++- R/costexplorer_service.R | 4 R/marketplacecatalog_interfaces.R | 98 +- R/marketplacecatalog_operations.R | 122 ++ R/marketplacecatalog_service.R | 6 R/marketplacecommerceanalytics_interfaces.R | 12 R/marketplacecommerceanalytics_operations.R | 6 R/marketplacecommerceanalytics_service.R | 4 R/marketplaceentitlementservice_interfaces.R | 6 R/marketplaceentitlementservice_operations.R | 3 R/marketplaceentitlementservice_service.R | 6 R/marketplacemetering_interfaces.R | 24 R/marketplacemetering_operations.R | 20 R/marketplacemetering_service.R | 10 R/paymentcryptographycontrolplane_interfaces.R | 192 +--- R/paymentcryptographycontrolplane_operations.R | 100 +- R/paymentcryptographycontrolplane_service.R | 4 R/paymentcryptographydataplane_interfaces.R | 90 -- R/paymentcryptographydataplane_operations.R | 52 - R/paymentcryptographydataplane_service.R | 6 R/pricing_interfaces.R | 30 R/pricing_operations.R | 15 R/pricing_service.R | 4 R/savingsplans_interfaces.R | 60 - R/savingsplans_operations.R | 30 R/savingsplans_service.R | 4 R/sysdata.rda |only man/billing.Rd | 15 man/billing_get_billing_preferences.Rd |only man/billing_get_credit_allocation_history.Rd |only man/billing_get_credits.Rd |only man/billing_get_enterprise_support_charge_summary.Rd |only man/billing_get_enterprise_support_contract_details.Rd |only man/billing_list_billing_view_segments.Rd |only man/billing_list_business_support_account_charges.Rd |only man/billing_list_business_support_subscription_history.Rd |only man/billing_list_enterprise_support_linked_account_charges.Rd |only man/billing_redeem_credits.Rd |only man/billing_update_billing_preferences.Rd |only man/billingconductor.Rd | 6 man/billingconductor_get_billing_transfer_preference.Rd |only man/billingconductor_update_billing_transfer_preference.Rd |only man/budgets.Rd | 4 man/costandusagereportservice.Rd | 4 man/costexplorer.Rd | 4 man/marketplacecatalog.Rd | 6 man/marketplacecatalog_describe_assessment.Rd |only man/marketplacecatalog_list_assessments.Rd |only man/marketplacecatalog_list_tags_for_resource.Rd | 2 man/marketplacecatalog_start_change_set.Rd | 2 man/marketplacecatalog_tag_resource.Rd | 2 man/marketplacecatalog_untag_resource.Rd | 2 man/marketplacecommerceanalytics.Rd | 4 man/marketplaceentitlementservice.Rd | 4 man/marketplacemetering.Rd | 8 man/marketplacemetering_batch_meter_usage.Rd | 8 man/marketplacemetering_resolve_customer.Rd | 4 man/paymentcryptographycontrolplane.Rd | 4 man/paymentcryptographycontrolplane_create_key.Rd | 2 man/paymentcryptographycontrolplane_import_key.Rd | 2 man/paymentcryptographydataplane.Rd | 6 man/paymentcryptographydataplane_gene_auth_requ_cryp.Rd | 2 man/paymentcryptographydataplane_re_encrypt_data.Rd | 5 man/pricing.Rd | 4 man/savingsplans.Rd | 4 tests/testthat.R |only tests/testthat/test_billing.R | 13 tests/testthat/test_billingconductor.R | 13 tests/testthat/test_budgets.R | 2 tests/testthat/test_costandusagereportservice.R | 2 tests/testthat/test_costexplorer.R | 12 tests/testthat/test_marketplacecatalog.R | 2 tests/testthat/test_marketplacecommerceanalytics.R | 2 tests/testthat/test_marketplaceentitlementservice.R | 2 tests/testthat/test_marketplacemetering.R | 2 tests/testthat/test_paymentcryptographycontrolplane.R | 6 tests/testthat/test_paymentcryptographydataplane.R | 2 tests/testthat/test_pricing.R | 4 tests/testthat/test_savingsplans.R | 5 95 files changed, 1825 insertions(+), 1198 deletions(-)
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Title: 'Amazon Web Services' Application Integration Services
Description: Interface to 'Amazon Web Services' application integration
services, including 'Simple Queue Service' ('SQS') message queue,
'Simple Notification Service' ('SNS') publish/subscribe messaging, and
more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.application.integration versions 0.10.0 dated 2026-05-30 and 0.11.0 dated 2026-10-07
DESCRIPTION | 11 MD5 | 165 +++--- NAMESPACE | 36 - R/eventbridge_interfaces.R | 315 +++-------- R/eventbridge_operations.R | 175 ++++-- R/eventbridge_service.R | 6 R/eventbridgepipes_interfaces.R | 60 -- R/eventbridgepipes_operations.R | 30 - R/eventbridgepipes_service.R | 4 R/eventbridgescheduler_interfaces.R | 72 -- R/eventbridgescheduler_operations.R | 36 - R/eventbridgescheduler_service.R | 4 R/locationservice_interfaces.R | 384 ++++---------- R/locationservice_operations.R | 210 ++++--- R/locationservice_service.R | 4 R/mq_interfaces.R | 148 ++--- R/mq_operations.R | 117 +++- R/mq_service.R | 5 R/mwaa_interfaces.R | 72 -- R/mwaa_operations.R | 36 - R/mwaa_service.R | 4 R/resourceexplorer_interfaces.R | 174 ++---- R/resourceexplorer_operations.R | 96 ++- R/resourceexplorer_service.R | 4 R/schemas_interfaces.R | 165 ++---- R/schemas_operations.R | 93 ++- R/schemas_service.R | 4 R/sfn_interfaces.R | 222 ++------ R/sfn_operations.R | 115 ++-- R/sfn_service.R | 8 R/sns_interfaces.R | 219 ++----- R/sns_operations.R | 162 ++++- R/sns_service.R | 10 R/sqs_interfaces.R | 111 +--- R/sqs_operations.R | 69 +- R/sqs_service.R | 6 R/swf_interfaces.R | 174 ++---- R/swf_operations.R | 117 ++-- R/swf_service.R | 6 R/sysdata.rda |only man/eventbridge.Rd | 4 man/eventbridge_create_event_bus.Rd | 2 man/eventbridge_update_event_bus.Rd | 2 man/eventbridgepipes.Rd | 4 man/eventbridgescheduler.Rd | 4 man/locationservice.Rd | 4 man/locationservice_calculate_route.Rd | 2 man/locationservice_calculate_route_matrix.Rd | 2 man/locationservice_create_key.Rd | 2 man/locationservice_create_place_index.Rd | 2 man/locationservice_get_device_position_history.Rd | 4 man/locationservice_search_place_index_for_suggestions.Rd | 2 man/locationservice_search_place_index_for_text.Rd | 2 man/locationservice_update_key.Rd | 2 man/mq.Rd | 5 man/mq_create_broker.Rd | 3 man/mq_describe_shared_resources.Rd |only man/mq_update_broker.Rd | 6 man/mwaa.Rd | 4 man/resourceexplorer.Rd | 4 man/schemas.Rd | 4 man/sfn.Rd | 4 man/sfn_create_activity.Rd | 2 man/sfn_start_execution.Rd | 2 man/sns.Rd | 8 man/sns_create_topic.Rd | 9 man/sns_get_data_protection_policy.Rd | 6 man/sns_publish.Rd | 6 man/sns_put_data_protection_policy.Rd | 6 man/sns_set_topic_attributes.Rd | 7 man/sqs.Rd | 4 man/swf.Rd | 4 tests/testthat.R |only tests/testthat/test_eventbridge.R | 12 tests/testthat/test_eventbridgepipes.R | 3 tests/testthat/test_eventbridgescheduler.R | 6 tests/testthat/test_locationservice.R | 16 tests/testthat/test_mq.R | 10 tests/testthat/test_mwaa.R | 4 tests/testthat/test_resourceexplorer.R | 18 tests/testthat/test_schemas.R | 4 tests/testthat/test_sfn.R | 5 tests/testthat/test_sns.R | 10 tests/testthat/test_sqs.R | 4 tests/testthat/test_swf.R | 2 85 files changed, 1879 insertions(+), 1986 deletions(-)
More information about paws.application.integration at CRAN
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Title: An R Interface to the Onigmo Regular Expression Library
Description: Provides an alternative to R's built-in functionality for handling
regular expressions, based on the Onigmo library. Offers first-class
compiled regex objects, partial matching and function-based substitutions,
amongst other features.
Author: Jon Clayden [cre, aut] ,
K Kosako [aut],
K Takata [aut]
Maintainer: Jon Clayden <code@clayden.org>
Diff between ore versions 1.7.5.1 dated 2025-03-14 and 1.8.0 dated 2026-10-07
ore-1.7.5.1/ore/src/wcwidth.c |only ore-1.7.5.1/ore/src/wcwidth.h |only ore-1.8.0/ore/DESCRIPTION | 17 ore-1.8.0/ore/LICENCE | 2 ore-1.8.0/ore/MD5 | 84 ore-1.8.0/ore/NEWS | 99 ore-1.8.0/ore/R/es.R | 4 ore-1.8.0/ore/R/file.R | 3 ore-1.8.0/ore/R/match.R | 34 ore-1.8.0/ore/R/zzz.R | 13 ore-1.8.0/ore/inst/tinytest/test-05-ore.R | 25 ore-1.8.0/ore/inst/tinytest/test-10-match.R | 75 ore-1.8.0/ore/inst/tinytest/test-12-files.R | 65 ore-1.8.0/ore/inst/tinytest/test-13-subst.R | 29 ore-1.8.0/ore/inst/tinytest/test-25-es.R | 4 ore-1.8.0/ore/inst/tinytest/test-35-engine.R |only ore-1.8.0/ore/man/ore_file.Rd | 3 ore-1.8.0/ore/man/ore_ismatch.Rd | 3 ore-1.8.0/ore/man/ore_split.Rd | 4 ore-1.8.0/ore/man/ore_subst.Rd | 4 ore-1.8.0/ore/man/ore_switch.Rd | 4 ore-1.8.0/ore/src/Makevars | 4 ore-1.8.0/ore/src/compile.c | 160 ore-1.8.0/ore/src/compile.h | 4 ore-1.8.0/ore/src/escape.c | 2 ore-1.8.0/ore/src/match.c | 159 ore-1.8.0/ore/src/match.h | 6 ore-1.8.0/ore/src/onig/enc/unicode/casefold.h | 6951 ++++--- ore-1.8.0/ore/src/onig/enc/unicode/name2ctype.h |22878 ++++++++++++++++++------ ore-1.8.0/ore/src/onig/onigmo.h | 7 ore-1.8.0/ore/src/onig/regcomp.c | 57 ore-1.8.0/ore/src/onig/regenc.c | 24 ore-1.8.0/ore/src/onig/regenc.h | 7 ore-1.8.0/ore/src/onig/regerror.c | 11 ore-1.8.0/ore/src/onig/regexec.c | 160 ore-1.8.0/ore/src/onig/regint.h | 5 ore-1.8.0/ore/src/onig/regparse.c | 209 ore-1.8.0/ore/src/onig/st.c | 35 ore-1.8.0/ore/src/print.c | 228 ore-1.8.0/ore/src/split.c | 10 ore-1.8.0/ore/src/subst.c | 118 ore-1.8.0/ore/src/text.c | 456 ore-1.8.0/ore/src/text.h | 31 ore-1.8.0/ore/src/width.c |only ore-1.8.0/ore/src/width.h |only ore-1.8.0/ore/tools |only 46 files changed, 23439 insertions(+), 8555 deletions(-)
Title: Convert, Validate, Format and Print Geographic Coordinates and
Waypoints
Description: Convert, validate, format and elegantly print geographic coordinates and waypoints
(paired latitude and longitude values) in decimal degrees, degrees and minutes, and degrees,
minutes and seconds using high performance C++ code to enable rapid conversion and formatting
of large coordinate and waypoint datasets.
Author: Mark Eisler [aut, cre, cph]
Maintainer: Mark Eisler <mark.eisler@bristol.ac.uk>
Diff between Waypoint versions 2.0.1 dated 2026-09-02 and 2.0.2 dated 2026-10-07
DESCRIPTION | 10 ++++----- MD5 | 12 +++++----- NEWS.md | 10 +++++++-- R/CoordBase.R | 2 - build/partial.rdb |binary src/CoordBase.cpp | 60 ++++++++++++++++++++++++++---------------------------- src/CoordBase.h | 43 +++++++++++++++++++++++++++----------- 7 files changed, 80 insertions(+), 57 deletions(-)
Title: 'Amazon Web Services' Analytics Services
Description: Interface to 'Amazon Web Services' 'analytics' services,
including 'Elastic MapReduce' 'Hadoop' and 'Spark' big data service,
'Elasticsearch' search engine, and more <https://aws.amazon.com/>.
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.analytics versions 0.10.0 dated 2026-05-30 and 0.11.0 dated 2026-10-07
DESCRIPTION | 11 MD5 | 561 + NAMESPACE | 36 R/athena_interfaces.R | 420 - R/athena_operations.R | 210 R/athena_service.R | 6 R/cloudsearch_interfaces.R | 153 R/cloudsearch_operations.R | 78 R/cloudsearch_service.R | 4 R/cloudsearchdomain_interfaces.R | 18 R/cloudsearchdomain_operations.R | 11 R/cloudsearchdomain_service.R | 4 R/datapipeline_interfaces.R | 108 R/datapipeline_operations.R | 57 R/datapipeline_service.R | 4 R/datazone_interfaces.R | 1127 +-- R/datazone_operations.R | 675 +- R/datazone_service.R | 6 R/elasticsearchservice_interfaces.R | 294 R/elasticsearchservice_operations.R | 173 R/elasticsearchservice_service.R | 6 R/emr_interfaces.R | 371 - R/emr_operations.R | 371 - R/emr_service.R | 11 R/entityresolution_interfaces.R | 228 R/entityresolution_operations.R | 128 R/entityresolution_service.R | 4 R/firehose_interfaces.R | 72 R/firehose_operations.R | 36 R/firehose_service.R | 6 R/glue_interfaces.R | 1940 ++---- R/glue_operations.R | 2088 +++++- R/glue_service.R | 47 R/gluedatabrew_interfaces.R | 264 R/gluedatabrew_operations.R | 132 R/gluedatabrew_service.R | 4 R/healthlake_interfaces.R | 208 R/healthlake_operations.R | 531 + R/healthlake_service.R | 23 R/ivs_interfaces.R | 232 R/ivs_operations.R | 168 R/ivs_service.R | 7 R/ivsrealtime_interfaces.R | 234 R/ivsrealtime_operations.R | 117 R/ivsrealtime_service.R | 4 R/kafka_interfaces.R | 398 - R/kafka_operations.R | 354 - R/kafka_service.R | 9 R/kafkaconnect_interfaces.R | 118 R/kafkaconnect_operations.R | 87 R/kafkaconnect_service.R | 5 R/kendra_interfaces.R | 348 - R/kendra_operations.R | 204 R/kendra_service.R | 4 R/kendraranking_interfaces.R | 48 R/kendraranking_operations.R | 27 R/kendraranking_service.R | 6 R/kinesis_interfaces.R | 241 R/kinesis_operations.R | 381 + R/kinesis_service.R | 10 R/kinesisanalytics_interfaces.R | 120 R/kinesisanalytics_operations.R | 60 R/kinesisanalytics_service.R | 4 R/kinesisanalyticsv2_interfaces.R | 198 R/kinesisanalyticsv2_operations.R | 99 R/kinesisanalyticsv2_service.R | 4 R/mturk_interfaces.R | 234 R/mturk_operations.R | 117 R/mturk_service.R | 4 R/opensearchingestion_interfaces.R | 132 R/opensearchingestion_operations.R | 66 R/opensearchingestion_service.R | 4 R/opensearchservice_interfaces.R | 599 - R/opensearchservice_operations.R | 561 + R/opensearchservice_service.R | 14 R/opensearchserviceserverless_interfaces.R | 276 R/opensearchserviceserverless_operations.R | 153 R/opensearchserviceserverless_service.R | 4 R/quicksight_interfaces.R | 2062 +++--- R/quicksight_operations.R | 3091 +++++++++- R/quicksight_service.R | 71 R/sysdata.rda |only man/athena.Rd | 4 man/cloudsearch.Rd | 4 man/cloudsearchdomain.Rd | 4 man/cloudsearchdomain_search.Rd | 2 man/datapipeline.Rd | 4 man/datazone.Rd | 6 man/datazone_create_environment.Rd | 4 man/datazone_create_environment_blueprint.Rd | 5 man/datazone_create_notebook.Rd | 3 man/datazone_delete_domain.Rd | 7 man/datazone_delete_lineage_event.Rd |only man/datazone_list_notebooks.Rd | 3 man/datazone_start_notebook_run.Rd | 3 man/datazone_start_notebook_sync.Rd |only man/datazone_update_environment_blueprint.Rd | 5 man/datazone_update_notebook.Rd | 3 man/elasticsearchservice.Rd | 4 man/elasticsearchservice_create_elasticsearch_domain.Rd | 14 man/elasticsearchservice_update_elasticsearch_domain_config.Rd | 10 man/emr.Rd | 9 man/emr_add_tags.Rd | 4 man/emr_get_session.Rd |only man/emr_get_session_endpoint.Rd |only man/emr_list_sessions.Rd |only man/emr_remove_tags.Rd | 4 man/emr_run_job_flow.Rd | 5 man/emr_start_session.Rd |only man/emr_terminate_session.Rd |only man/entityresolution.Rd | 4 man/entityresolution_create_matching_workflow.Rd | 2 man/entityresolution_delete_id_mapping_workflow.Rd | 2 man/entityresolution_delete_id_namespace.Rd | 2 man/entityresolution_delete_matching_workflow.Rd | 2 man/entityresolution_delete_schema_mapping.Rd | 2 man/entityresolution_generate_match_id.Rd | 4 man/entityresolution_update_matching_workflow.Rd | 2 man/firehose.Rd | 4 man/glue.Rd | 45 man/glue_associate_glossary_terms.Rd |only man/glue_batch_get_data_quality_ruleset_evaluation_run.Rd |only man/glue_batch_get_iterable_forms.Rd |only man/glue_batch_get_partition.Rd | 4 man/glue_create_crawler.Rd | 5 man/glue_create_glossary.Rd |only man/glue_create_glossary_term.Rd |only man/glue_create_session.Rd | 5 man/glue_delete_asset.Rd |only man/glue_delete_asset_type.Rd |only man/glue_delete_attachment.Rd |only man/glue_delete_column_statistics_task_settings.Rd | 8 man/glue_delete_form_type.Rd |only man/glue_delete_glossary.Rd |only man/glue_delete_glossary_term.Rd |only man/glue_disassociate_glossary_terms.Rd |only man/glue_get_asset.Rd |only man/glue_get_asset_type.Rd |only man/glue_get_column_statistics_task_runs.Rd | 5 man/glue_get_column_statistics_task_settings.Rd | 8 man/glue_get_dashboard_url.Rd |only man/glue_get_data_catalog_export_configuration.Rd |only man/glue_get_form_type.Rd |only man/glue_get_glossary.Rd |only man/glue_get_glossary_term.Rd |only man/glue_get_session_endpoint.Rd |only man/glue_get_table.Rd | 12 man/glue_get_tables.Rd | 7 man/glue_list_asset_types.Rd |only man/glue_list_data_quality_rule_recommendation_runs.Rd | 5 man/glue_list_form_types.Rd |only man/glue_list_glossaries.Rd |only man/glue_list_glossary_terms.Rd |only man/glue_list_integration_table_properties.Rd |only man/glue_list_iterable_forms.Rd |only man/glue_list_materialized_view_refresh_task_runs.Rd | 2 man/glue_put_asset.Rd |only man/glue_put_asset_type.Rd |only man/glue_put_attachment.Rd |only man/glue_put_data_catalog_export_configuration.Rd |only man/glue_put_form_type.Rd |only man/glue_search_assets.Rd |only man/glue_start_column_statistics_task_run_schedule.Rd | 8 man/glue_start_data_quality_rule_recommendation_run.Rd | 14 man/glue_start_materialized_view_refresh_task_run.Rd | 8 man/glue_stop_column_statistics_task_run.Rd | 4 man/glue_stop_column_statistics_task_run_schedule.Rd | 8 man/glue_stop_materialized_view_refresh_task_run.Rd | 8 man/glue_update_asset.Rd |only man/glue_update_crawler.Rd | 5 man/glue_update_glossary.Rd |only man/glue_update_glossary_term.Rd |only man/gluedatabrew.Rd | 4 man/healthlake.Rd | 23 man/healthlake_create_data_transformation_profile.Rd |only man/healthlake_create_fhir_datastore.Rd | 14 man/healthlake_delete_data_transformation_profile.Rd |only man/healthlake_delete_fhir_datastore.Rd | 2 man/healthlake_describe_data_transformation_job.Rd |only man/healthlake_get_data_transformation_profile.Rd |only man/healthlake_list_data_transformation_jobs.Rd |only man/healthlake_list_data_transformation_profile_versions.Rd |only man/healthlake_list_data_transformation_profiles.Rd |only man/healthlake_publish_data_transformation_profile.Rd |only man/healthlake_restore_fhir_datastore.Rd |only man/healthlake_start_data_transformation_job.Rd |only man/healthlake_start_fhir_import_job.Rd | 16 man/healthlake_update_data_transformation_profile.Rd |only man/healthlake_update_fhir_datastore.Rd |only man/healthlake_update_profile_with_agent.Rd |only man/ivs.Rd | 7 man/ivs_create_ad_configuration.Rd | 5 man/ivs_create_channel.Rd | 2 man/ivs_insert_ad_break.Rd | 2 man/ivs_update_ad_configuration.Rd |only man/ivs_update_channel.Rd | 2 man/ivsrealtime.Rd | 4 man/kafka.Rd | 9 man/kafka_create_channel.Rd |only man/kafka_delete_channel.Rd |only man/kafka_describe_channel.Rd |only man/kafka_list_channels.Rd |only man/kafka_update_channel.Rd |only man/kafkaconnect.Rd | 5 man/kafkaconnect_restart_connector.Rd |only man/kendra.Rd | 4 man/kendra_list_tags_for_resource.Rd | 2 man/kendra_tag_resource.Rd | 2 man/kendra_untag_resource.Rd | 2 man/kendraranking.Rd | 4 man/kinesis.Rd | 10 man/kinesis_create_channel.Rd |only man/kinesis_create_stream.Rd | 11 man/kinesis_delete_channel.Rd |only man/kinesis_deregister_stream_consumer.Rd | 2 man/kinesis_describe_channel.Rd |only man/kinesis_describe_stream_consumer.Rd | 2 man/kinesis_get_records.Rd | 5 man/kinesis_get_shard_iterator.Rd | 5 man/kinesis_list_channels.Rd |only man/kinesis_list_stream_consumers.Rd | 2 man/kinesis_put_record.Rd | 11 man/kinesis_put_records.Rd | 5 man/kinesis_register_stream_consumer.Rd | 2 man/kinesis_subscribe_to_shard.Rd | 5 man/kinesis_update_channel.Rd |only man/kinesis_update_stream_record_distribution_strategy.Rd |only man/kinesis_update_stream_warm_throughput.Rd | 2 man/kinesisanalytics.Rd | 4 man/kinesisanalyticsv2.Rd | 4 man/mturk.Rd | 4 man/opensearchingestion.Rd | 4 man/opensearchservice.Rd | 12 man/opensearchservice_attach_data_source.Rd |only man/opensearchservice_create_domain.Rd | 8 man/opensearchservice_describe_data_source_attachment.Rd |only man/opensearchservice_detach_data_source.Rd |only man/opensearchservice_get_migration.Rd |only man/opensearchservice_insight_feedback.Rd |only man/opensearchservice_list_data_source_attachments.Rd |only man/opensearchservice_list_migrations.Rd |only man/opensearchservice_start_migration.Rd |only man/opensearchservice_update_application.Rd | 9 man/opensearchservice_update_domain_config.Rd | 11 man/opensearchserviceserverless.Rd | 4 man/opensearchserviceserverless_create_collection.Rd | 3 man/opensearchserviceserverless_create_collection_group.Rd | 3 man/opensearchserviceserverless_update_collection.Rd | 3 man/quicksight.Rd | 71 man/quicksight_batch_delete_knowledge_base.Rd |only man/quicksight_batch_describe_user_limits.Rd |only man/quicksight_create_agent.Rd |only man/quicksight_create_analysis.Rd | 2 man/quicksight_create_approval_policy.Rd |only man/quicksight_create_custom_permissions.Rd | 3 man/quicksight_create_dashboard.Rd | 2 man/quicksight_create_data_set.Rd | 2 man/quicksight_create_dlp_setting.Rd |only man/quicksight_create_flow.Rd |only man/quicksight_create_knowledge_base.Rd |only man/quicksight_create_limits_profile.Rd |only man/quicksight_create_o_auth_client_application.Rd |only man/quicksight_create_space.Rd |only man/quicksight_create_template.Rd | 2 man/quicksight_create_topic_v2.Rd |only man/quicksight_delete_agent.Rd |only man/quicksight_delete_app.Rd |only man/quicksight_delete_approval_policy.Rd |only man/quicksight_delete_dlp_setting.Rd |only man/quicksight_delete_flow.Rd |only man/quicksight_delete_knowledge_base.Rd |only man/quicksight_delete_limits_profile.Rd |only man/quicksight_delete_o_auth_client_application.Rd |only man/quicksight_delete_space.Rd |only man/quicksight_delete_topic_v2.Rd |only man/quicksight_describe_agent.Rd |only man/quicksight_describe_agent_permissions.Rd |only man/quicksight_describe_app.Rd |only man/quicksight_describe_app_permissions.Rd |only man/quicksight_describe_approval_policy.Rd |only man/quicksight_describe_data_set.Rd | 2 man/quicksight_describe_dlp_setting.Rd |only man/quicksight_describe_flow.Rd |only man/quicksight_describe_knowledge_base.Rd |only man/quicksight_describe_knowledge_base_permissions.Rd |only man/quicksight_describe_limits_profile.Rd |only man/quicksight_describe_o_auth_client_application.Rd |only man/quicksight_describe_space.Rd |only man/quicksight_describe_space_permissions.Rd |only man/quicksight_describe_topic_permissions_v2.Rd |only man/quicksight_describe_topic_v2.Rd |only man/quicksight_list_agents.Rd |only man/quicksight_list_approval_policies.Rd |only man/quicksight_list_apps.Rd |only man/quicksight_list_dlp_settings.Rd |only man/quicksight_list_knowledge_bases.Rd |only man/quicksight_list_limits_profiles.Rd |only man/quicksight_list_o_auth_client_applications.Rd |only man/quicksight_list_space_resources.Rd |only man/quicksight_list_spaces.Rd |only man/quicksight_list_topics_v2.Rd |only man/quicksight_list_users_index_capacity.Rd |only man/quicksight_search_agents.Rd |only man/quicksight_search_apps.Rd |only man/quicksight_search_knowledge_bases.Rd |only man/quicksight_search_spaces.Rd |only man/quicksight_search_topics_v2.Rd |only man/quicksight_update_agent.Rd |only man/quicksight_update_agent_permissions.Rd |only man/quicksight_update_analysis.Rd | 2 man/quicksight_update_app_permissions.Rd |only man/quicksight_update_approval_policy.Rd |only man/quicksight_update_custom_permissions.Rd | 5 man/quicksight_update_dashboard.Rd | 2 man/quicksight_update_data_set.Rd | 2 man/quicksight_update_dlp_setting.Rd |only man/quicksight_update_flow.Rd |only man/quicksight_update_knowledge_base.Rd |only man/quicksight_update_knowledge_base_permissions.Rd |only man/quicksight_update_limits_profile.Rd |only man/quicksight_update_o_auth_client_application.Rd |only man/quicksight_update_space.Rd |only man/quicksight_update_space_permissions.Rd |only man/quicksight_update_space_resources.Rd |only man/quicksight_update_template.Rd | 2 man/quicksight_update_topic_permissions_v2.Rd |only man/quicksight_update_topic_v2.Rd |only tests/testthat.R |only tests/testthat/test_athena.R | 16 tests/testthat/test_cloudsearch.R | 4 tests/testthat/test_cloudsearchdomain.R | 2 tests/testthat/test_datapipeline.R | 3 tests/testthat/test_datazone.R | 3 tests/testthat/test_elasticsearchservice.R | 16 tests/testthat/test_emr.R | 11 tests/testthat/test_entityresolution.R | 7 tests/testthat/test_firehose.R | 3 tests/testthat/test_glue.R | 81 tests/testthat/test_gluedatabrew.R | 14 tests/testthat/test_healthlake.R | 14 tests/testthat/test_ivs.R | 8 tests/testthat/test_ivsrealtime.R | 8 tests/testthat/test_kafka.R | 14 tests/testthat/test_kafkaconnect.R | 5 tests/testthat/test_kendra.R | 4 tests/testthat/test_kendraranking.R | 4 tests/testthat/test_kinesis.R | 18 tests/testthat/test_kinesisanalytics.R | 3 tests/testthat/test_kinesisanalyticsv2.R | 2 tests/testthat/test_mturk.R | 2 tests/testthat/test_opensearchingestion.R | 9 tests/testthat/test_opensearchservice.R | 18 tests/testthat/test_opensearchserviceserverless.R | 5 tests/testthat/test_quicksight.R | 10 354 files changed, 14123 insertions(+), 8091 deletions(-)
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Title: Parametric Mortality Models, Life Tables and HMD
Description: Fit the most popular human mortality 'laws', and construct
full and abridged life tables given various input indices. A mortality
law is a parametric function that describes the dying-out process of
individuals in a population during a significant portion of their
life spans. For a comprehensive review of the most important mortality
laws see Tabeau (2001) <doi:10.1007/0-306-47562-6_1>.
Practical functions for downloading data from various human mortality
databases are provided as well.
Author: Marius D. Pascariu [aut, cre, cph] ,
Vladimir Canudas-Romo [ctb]
Maintainer: Marius D. Pascariu <mpascariu@outlook.com>
Diff between MortalityLaws versions 2.2.0 dated 2026-05-05 and 3.0.0 dated 2026-10-07
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MortalityLaws-3.0.0/MortalityLaws/NAMESPACE | 96 MortalityLaws-3.0.0/MortalityLaws/NEWS | 318 - MortalityLaws-3.0.0/MortalityLaws/R/LawTable.R | 101 MortalityLaws-3.0.0/MortalityLaws/R/LifeTable_aux.R |only MortalityLaws-3.0.0/MortalityLaws/R/LifeTable_inverse.R |only MortalityLaws-3.0.0/MortalityLaws/R/LifeTable_main.R |only MortalityLaws-3.0.0/MortalityLaws/R/MortalityLaw_S3.R | 619 +- MortalityLaws-3.0.0/MortalityLaws/R/MortalityLaw_check.R | 191 MortalityLaws-3.0.0/MortalityLaws/R/MortalityLaw_main.R | 1299 ++-- MortalityLaws-3.0.0/MortalityLaws/R/MortalityLaw_models.R | 501 + MortalityLaws-3.0.0/MortalityLaws/R/MortalityLaw_models2.R |only MortalityLaws-3.0.0/MortalityLaws/R/MortalityLaws-data.R | 47 MortalityLaws-3.0.0/MortalityLaws/R/MortalityLaws-package.R | 12 MortalityLaws-3.0.0/MortalityLaws/R/convertFx.R | 240 MortalityLaws-3.0.0/MortalityLaws/R/plot-LifeTable.R |only MortalityLaws-3.0.0/MortalityLaws/R/plot-MortalityLaw.R |only MortalityLaws-3.0.0/MortalityLaws/R/plot-convertFx.R |only MortalityLaws-3.0.0/MortalityLaws/R/plot-shared.R |only MortalityLaws-3.0.0/MortalityLaws/R/read-AHMD.R |only MortalityLaws-3.0.0/MortalityLaws/R/read-CHMD.R |only MortalityLaws-3.0.0/MortalityLaws/R/read-HMD.R |only MortalityLaws-3.0.0/MortalityLaws/R/read-JMD.R |only MortalityLaws-3.0.0/MortalityLaws/R/read-availableHMD.R |only MortalityLaws-3.0.0/MortalityLaws/R/read-shared.R |only MortalityLaws-3.0.0/MortalityLaws/R/utils.R | 70 MortalityLaws-3.0.0/MortalityLaws/README.md | 169 MortalityLaws-3.0.0/MortalityLaws/build/vignette.rds |binary MortalityLaws-3.0.0/MortalityLaws/inst/doc/Intro.R | 112 MortalityLaws-3.0.0/MortalityLaws/inst/doc/Intro.Rmd | 780 +- MortalityLaws-3.0.0/MortalityLaws/inst/doc/Intro.html | 2879 +++++++--- MortalityLaws-3.0.0/MortalityLaws/inst/doc/Life-tables.R |only MortalityLaws-3.0.0/MortalityLaws/inst/doc/Life-tables.Rmd |only MortalityLaws-3.0.0/MortalityLaws/inst/doc/Life-tables.html |only MortalityLaws-3.0.0/MortalityLaws/inst/doc/Mortality-models.R |only MortalityLaws-3.0.0/MortalityLaws/inst/doc/Mortality-models.Rmd |only MortalityLaws-3.0.0/MortalityLaws/inst/doc/Mortality-models.html |only MortalityLaws-3.0.0/MortalityLaws/inst/examples |only MortalityLaws-3.0.0/MortalityLaws/inst/figures/hex-mortalitylaws-dark.png |only MortalityLaws-3.0.0/MortalityLaws/inst/figures/hex-mortalitylaws-lime.png |only MortalityLaws-3.0.0/MortalityLaws/man/AHMD_sample.Rd | 14 MortalityLaws-3.0.0/MortalityLaws/man/AIC.MortalityLaw.Rd | 26 MortalityLaws-3.0.0/MortalityLaws/man/CHMD_sample.Rd | 14 MortalityLaws-3.0.0/MortalityLaws/man/HMD_sample.Rd | 14 MortalityLaws-3.0.0/MortalityLaws/man/HP.Rd | 11 MortalityLaws-3.0.0/MortalityLaws/man/HP2.Rd | 11 MortalityLaws-3.0.0/MortalityLaws/man/HP3.Rd | 11 MortalityLaws-3.0.0/MortalityLaws/man/HP4.Rd | 11 MortalityLaws-3.0.0/MortalityLaws/man/JMD_sample.Rd | 14 MortalityLaws-3.0.0/MortalityLaws/man/LawTable.Rd | 388 - 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Title: Conduct Response Item Network (ResIN) Analysis with Social
Response Data
Description: Contains various tools to estimate, analyze, and visualize Response Item Networks. 'ResIN' dummy-codes ordered and qualitative response choices from (survey) data, calculates pairwise associations and maps the location of each item response as a node in a force-directed network. Please refer to <https://www.resinmethod.net/> for more details.
Author: Philip Warncke [cre, aut],
Dino Carpentras [aut],
Adrian Lueders [aut]
Maintainer: Philip Warncke <philip.warncke@ul.ie>
Diff between ResIN versions 2.3.1 dated 2026-03-13 and 2.3.2 dated 2026-10-07
DESCRIPTION | 8 ++--- MD5 | 20 ++++++------- NAMESPACE | 1 NEWS.md | 65 +++---------------------------------------- R/ResIN.R | 65 +++++++++++++++++++++++++++++++++++++------ build/vignette.rds |binary inst/doc/ResIN-VIGNETTE.R | 2 - inst/doc/ResIN-VIGNETTE.Rmd | 2 - inst/doc/ResIN-VIGNETTE.html | 12 +++---- man/ResIN.Rd | 9 +++++ vignettes/ResIN-VIGNETTE.Rmd | 2 - 11 files changed, 94 insertions(+), 92 deletions(-)
Title: Archaeological Synchronism
Description: Estimation of unknown historical or archaeological dates subject to relationships with other relative dates and absolute constraints, derived as marginal densities from the full joint conditional, using a two-stage Gibbs sampler with consistent batch means to assess convergence. Features reporting on Monte Carlo standard errors, as well as tools for rule-based estimation of dates of production and use of artifact types, aligning and checking relative sequences, and evaluating the impact of the omission of relative/absolute events upon one another. Collins-Elliott (2026) "eratosthenes: Synchronizing archaeological chronologies with a focus on artifact types" <doi:10.21105/joss.09260>.
Author: Stephen A. Collins-Elliott [aut, cre]
Maintainer: Stephen A. Collins-Elliott <sce@utk.edu>
Diff between eratosthenes versions 1.0.2 dated 2026-10-01 and 1.0.4 dated 2026-10-07
DESCRIPTION | 8 - MD5 | 12 +- R/eratosthenes.R | 180 ++++++++++++++++++++++++++----------- README.md | 9 + build/partial.rdb |binary man/quae_antea.Rd | 3 tests/testthat/test-eratosthenes.R | 13 ++ 7 files changed, 164 insertions(+), 61 deletions(-)
Title: AI Agents for Data Analysis
Description: Implements trustworthy large language model agents.
Connect raw data sources, a pool of trusted calculations, and a searchable
context layer that demonstrates how to interpret them.
Then, deploy data agents that answer questions, log interactions, and
can be evaluated and improved over time.
Author: Simon Couch [aut, cre] ,
Sara Altman [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
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Title: Dynamic, Probabilistic, and Higher-Order Network Analysis
Description: Estimate, compare, and analyze dynamic and psychological networks
using a unified interface. Provides transition network analysis
estimation (transition, frequency, co-occurrence, attention-weighted)
Saqr et al. (2025) <doi:10.1145/3706468.3706513>, psychological
network methods (correlation, partial correlation, 'graphical lasso',
'Ising') Saqr, Beck, and Lopez-Pernas (2024)
<doi:10.1007/978-3-031-54464-4_19>,
and higher-order network methods including higher-order networks,
higher-order network embedding, hyper-path anomaly, and multi-order
generative model. Supports bootstrap inference, permutation testing,
split-half reliability, centrality stability analysis, mixed Markov
models, multi-cluster multi-layer networks and clustering.
Author: Mohammed Saqr [aut, cre, cph],
Sonsoles Lopez-Pernas [aut],
Kamila Misiejuk [aut]
Maintainer: Mohammed Saqr <saqr@saqr.me>
Diff between Nestimate versions 0.8.5 dated 2026-08-21 and 0.9.24 dated 2026-10-07
Nestimate-0.8.5/Nestimate/R/glasso_pure.R |only Nestimate-0.8.5/Nestimate/man/compare_model.netobject_group.Rd |only Nestimate-0.8.5/Nestimate/man/plot.boot_glasso.Rd |only Nestimate-0.8.5/Nestimate/man/plot.chain_structure.Rd |only Nestimate-0.8.5/Nestimate/man/plot.cluster_choice.Rd |only Nestimate-0.8.5/Nestimate/man/plot.mcml_pc.Rd |only Nestimate-0.8.5/Nestimate/man/plot.mmm_compare.Rd |only Nestimate-0.8.5/Nestimate/man/plot.mosaic_analysis.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_association_rules.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_bayes.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_centrality.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_centrality_group.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_cluster_diagnostics.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_clustering.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_comparison.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_edge_betweenness.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_entropy_bayes.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_entropy_trajectory.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_gimme.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_honem.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_markov_order.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_mmm.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_mmm_clustering.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_mogen.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_path_dependence.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_reliability.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_sequence_comparison.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_stability.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_transition_entropy.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_vertex_bootstrap.Rd |only Nestimate-0.8.5/Nestimate/man/plot.net_vertex_comparison.Rd |only Nestimate-0.8.5/Nestimate/man/plot.pc_loading_stability.Rd |only Nestimate-0.8.5/Nestimate/man/plot.persistence_landscape.Rd |only Nestimate-0.8.5/Nestimate/man/plot.persistent_homology.Rd |only Nestimate-0.8.5/Nestimate/man/plot.q_analysis.Rd |only Nestimate-0.8.5/Nestimate/man/plot.simplicial_complex.Rd |only Nestimate-0.8.5/Nestimate/man/print.boot_glasso.Rd |only Nestimate-0.8.5/Nestimate/man/print.chain_structure.Rd |only Nestimate-0.8.5/Nestimate/man/print.chain_structure_group.Rd |only Nestimate-0.8.5/Nestimate/man/print.cluster_choice.Rd |only Nestimate-0.8.5/Nestimate/man/print.mcml.Rd |only Nestimate-0.8.5/Nestimate/man/print.mcml_layer.Rd |only Nestimate-0.8.5/Nestimate/man/print.mcml_pc.Rd |only Nestimate-0.8.5/Nestimate/man/print.mmm_compare.Rd |only Nestimate-0.8.5/Nestimate/man/print.mosaic_analysis.Rd |only Nestimate-0.8.5/Nestimate/man/print.nestimate_data.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_association_rules.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_bayes.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_bayes_group.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_bootstrap.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_bootstrap_group.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_certainty.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_cluster_diagnostics.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_clustering.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_entropy_bayes.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_entropy_bayes_group.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_entropy_trajectory.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_gimme.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_hon.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_honem.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_hypa.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_link_prediction.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_markov_order.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_markov_order_group.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_markov_stability_group.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_mlvar.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_mmm.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_mmm_clustering.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_mogen.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_mpt_group.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_nct.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_path_dependence.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_permutation.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_permutation_group.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_pruning_details.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_reliability.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_sequence_comparison.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_stability.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_stability_group.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_transition_entropy.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_transition_entropy_group.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_vertex_bootstrap.Rd |only Nestimate-0.8.5/Nestimate/man/print.net_vertex_comparison.Rd |only Nestimate-0.8.5/Nestimate/man/print.netobject.Rd |only Nestimate-0.8.5/Nestimate/man/print.netobject_group.Rd |only Nestimate-0.8.5/Nestimate/man/print.netobject_ml.Rd |only Nestimate-0.8.5/Nestimate/man/print.pc_loading_stability.Rd |only Nestimate-0.8.5/Nestimate/man/print.persistence_landscape.Rd |only Nestimate-0.8.5/Nestimate/man/print.persistent_homology.Rd |only Nestimate-0.8.5/Nestimate/man/print.q_analysis.Rd |only Nestimate-0.8.5/Nestimate/man/print.simplicial_complex.Rd |only Nestimate-0.8.5/Nestimate/man/print.summary.net_path_dependence.Rd |only Nestimate-0.8.5/Nestimate/man/print.summary.net_transition_entropy.Rd |only Nestimate-0.8.5/Nestimate/man/print.summary_chain_structure.Rd |only Nestimate-0.8.5/Nestimate/man/print.tidy_covariates.Rd |only Nestimate-0.8.5/Nestimate/man/print.wtna_boot_mixed.Rd |only Nestimate-0.8.5/Nestimate/man/print.wtna_mixed.Rd |only Nestimate-0.8.5/Nestimate/man/print.wtna_perm_mixed.Rd |only Nestimate-0.8.5/Nestimate/man/state_freq.Rd |only Nestimate-0.8.5/Nestimate/man/summary.boot_glasso.Rd |only Nestimate-0.8.5/Nestimate/man/summary.chain_structure.Rd |only Nestimate-0.8.5/Nestimate/man/summary.chain_structure_group.Rd |only Nestimate-0.8.5/Nestimate/man/summary.cluster_choice.Rd |only Nestimate-0.8.5/Nestimate/man/summary.mcml.Rd |only Nestimate-0.8.5/Nestimate/man/summary.mcml_pc.Rd |only Nestimate-0.8.5/Nestimate/man/summary.mmm_compare.Rd |only Nestimate-0.8.5/Nestimate/man/summary.mosaic_analysis.Rd |only Nestimate-0.8.5/Nestimate/man/summary.nest_initial_probs.Rd |only Nestimate-0.8.5/Nestimate/man/summary.nest_transition_counts.Rd |only Nestimate-0.8.5/Nestimate/man/summary.nest_transition_matrix.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_association_rules.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_bayes.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_bayes_group.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_bootstrap.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_bootstrap_group.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_clustering.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_entropy_bayes.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_entropy_trajectory.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_gimme.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_hon.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_honem.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_hypa.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_link_prediction.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_markov_order.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_mlvar.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_mmm.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_mogen.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_nct.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_path_dependence.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_permutation.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_permutation_group.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_reliability.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_sequence_comparison.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_stability.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_stability_group.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_transition_entropy.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_vertex_bootstrap.Rd |only Nestimate-0.8.5/Nestimate/man/summary.net_vertex_comparison.Rd |only Nestimate-0.8.5/Nestimate/man/summary.netobject.Rd |only Nestimate-0.8.5/Nestimate/man/summary.netobject_group.Rd |only Nestimate-0.8.5/Nestimate/man/summary.wtna_boot_mixed.Rd |only Nestimate-0.8.5/Nestimate/man/summary.wtna_perm_mixed.Rd |only Nestimate-0.8.5/Nestimate/tests/testthat/test-htna-clustering-equivalence.R |only Nestimate-0.8.5/Nestimate/tests/testthat/test-mgm-moderated.R |only Nestimate-0.8.5/Nestimate/tests/testthat/test-prepare-grouping-equivalence.R |only Nestimate-0.9.24/Nestimate/DESCRIPTION | 12 Nestimate-0.9.24/Nestimate/MD5 | 658 ++--- Nestimate-0.9.24/Nestimate/NAMESPACE | 55 Nestimate-0.9.24/Nestimate/NEWS.md | 572 +++++ Nestimate-0.9.24/Nestimate/R/as_netobject.R | 4 Nestimate-0.9.24/Nestimate/R/association_rules.R | 72 Nestimate-0.9.24/Nestimate/R/bayes_compare.R | 94 Nestimate-0.9.24/Nestimate/R/boot_glasso.R | 187 - Nestimate-0.9.24/Nestimate/R/bootstrap_network.R | 371 +-- Nestimate-0.9.24/Nestimate/R/build_network.R | 235 +- Nestimate-0.9.24/Nestimate/R/casedrop_reliability.R | 94 Nestimate-0.9.24/Nestimate/R/centrality_measures.R | 149 - Nestimate-0.9.24/Nestimate/R/centrality_stability.R | 177 - Nestimate-0.9.24/Nestimate/R/certainty.R | 27 Nestimate-0.9.24/Nestimate/R/chain_structure.R | 96 Nestimate-0.9.24/Nestimate/R/clique_expansion.R | 13 Nestimate-0.9.24/Nestimate/R/cluster_choice.R | 56 Nestimate-0.9.24/Nestimate/R/cluster_data.R | 130 - Nestimate-0.9.24/Nestimate/R/cluster_diagnostics.R | 53 Nestimate-0.9.24/Nestimate/R/co_occurrence.R | 15 Nestimate-0.9.24/Nestimate/R/compare_network.R | 71 Nestimate-0.9.24/Nestimate/R/compare_networks.R |only Nestimate-0.9.24/Nestimate/R/compare_networks_plot.R |only Nestimate-0.9.24/Nestimate/R/data.R | 26 Nestimate-0.9.24/Nestimate/R/data_conversion.R | 48 Nestimate-0.9.24/Nestimate/R/distribution_plot.R | 42 Nestimate-0.9.24/Nestimate/R/estimate_network.R | 7 Nestimate-0.9.24/Nestimate/R/estimator_registry.R | 13 Nestimate-0.9.24/Nestimate/R/estimators.R | 334 --- Nestimate-0.9.24/Nestimate/R/estimators_sequence.R |only Nestimate-0.9.24/Nestimate/R/extract_pathways.R |only Nestimate-0.9.24/Nestimate/R/extraction.R | 60 Nestimate-0.9.24/Nestimate/R/frequencies.R | 49 Nestimate-0.9.24/Nestimate/R/gimme.R | 1110 ---------- Nestimate-0.9.24/Nestimate/R/hon.R | 83 Nestimate-0.9.24/Nestimate/R/honem.R | 84 Nestimate-0.9.24/Nestimate/R/hypa.R | 79 Nestimate-0.9.24/Nestimate/R/hypergraph.R | 10 Nestimate-0.9.24/Nestimate/R/hypergraph_centrality.R | 9 Nestimate-0.9.24/Nestimate/R/hypergraph_laplacian.R |only Nestimate-0.9.24/Nestimate/R/hypergraph_measures.R | 12 Nestimate-0.9.24/Nestimate/R/link_prediction.R | 90 Nestimate-0.9.24/Nestimate/R/macro_network.R |only Nestimate-0.9.24/Nestimate/R/magnitude_difference.R | 27 Nestimate-0.9.24/Nestimate/R/markov.R | 73 Nestimate-0.9.24/Nestimate/R/markov_order.R | 97 Nestimate-0.9.24/Nestimate/R/mcml.R | 745 ++++-- Nestimate-0.9.24/Nestimate/R/mcml_pc.R | 267 +- Nestimate-0.9.24/Nestimate/R/mgm.R | 586 ----- Nestimate-0.9.24/Nestimate/R/mlvar.R | 472 ---- Nestimate-0.9.24/Nestimate/R/mmm.R | 289 -- Nestimate-0.9.24/Nestimate/R/mogen.R | 158 - Nestimate-0.9.24/Nestimate/R/mosaic_analysis.R | 60 Nestimate-0.9.24/Nestimate/R/nct.R | 77 Nestimate-0.9.24/Nestimate/R/outcome_model.R |only Nestimate-0.9.24/Nestimate/R/path_dependence.R | 48 Nestimate-0.9.24/Nestimate/R/pathways.R | 56 Nestimate-0.9.24/Nestimate/R/permutation_diagnostics.R |only Nestimate-0.9.24/Nestimate/R/permutation_test.R | 748 ++++-- Nestimate-0.9.24/Nestimate/R/ph_distances.R | 37 Nestimate-0.9.24/Nestimate/R/plot-utils.R | 139 + Nestimate-0.9.24/Nestimate/R/plot_state_frequencies.R | 176 - Nestimate-0.9.24/Nestimate/R/prepare_data.R | 216 + Nestimate-0.9.24/Nestimate/R/prune.R | 10 Nestimate-0.9.24/Nestimate/R/reliability.R | 84 Nestimate-0.9.24/Nestimate/R/rename_models.R | 16 Nestimate-0.9.24/Nestimate/R/sequence_compare.R | 87 Nestimate-0.9.24/Nestimate/R/sequence_plot.R | 183 + Nestimate-0.9.24/Nestimate/R/sequence_plot_mcml.R | 433 +++ Nestimate-0.9.24/Nestimate/R/sequence_terminal.R | 21 Nestimate-0.9.24/Nestimate/R/session_ids.R |only Nestimate-0.9.24/Nestimate/R/simplicial.R | 190 - Nestimate-0.9.24/Nestimate/R/simplicial_features.R |only Nestimate-0.9.24/Nestimate/R/state_colors.R |only Nestimate-0.9.24/Nestimate/R/subtract_networks.R | 25 Nestimate-0.9.24/Nestimate/R/summary_network.R | 30 Nestimate-0.9.24/Nestimate/R/transition_entropy.R | 174 - Nestimate-0.9.24/Nestimate/R/vertex_bootstrap.R | 69 Nestimate-0.9.24/Nestimate/R/wtna.R | 40 Nestimate-0.9.24/Nestimate/README.md | 26 Nestimate-0.9.24/Nestimate/inst/doc/clustering.html | 43 Nestimate-0.9.24/Nestimate/inst/doc/transition-networks.html | 5 Nestimate-0.9.24/Nestimate/man/Nestimate-package.Rd | 2 Nestimate-0.9.24/Nestimate/man/action_to_onehot.Rd | 5 Nestimate-0.9.24/Nestimate/man/as_htna.Rd | 18 Nestimate-0.9.24/Nestimate/man/as_netdifference.Rd | 8 Nestimate-0.9.24/Nestimate/man/as_netobject.Rd | 2 Nestimate-0.9.24/Nestimate/man/as_networks.Rd | 9 Nestimate-0.9.24/Nestimate/man/as_tna.Rd | 102 Nestimate-0.9.24/Nestimate/man/association_rules.Rd | 47 Nestimate-0.9.24/Nestimate/man/bayes_compare.Rd | 50 Nestimate-0.9.24/Nestimate/man/boot_glasso.Rd | 60 Nestimate-0.9.24/Nestimate/man/bootstrap_network.Rd | 112 - Nestimate-0.9.24/Nestimate/man/build_atna.Rd | 8 Nestimate-0.9.24/Nestimate/man/build_clusters.Rd | 54 Nestimate-0.9.24/Nestimate/man/build_cna.Rd | 8 Nestimate-0.9.24/Nestimate/man/build_cor.Rd | 5 Nestimate-0.9.24/Nestimate/man/build_ftna.Rd | 8 Nestimate-0.9.24/Nestimate/man/build_gimme.Rd | 53 Nestimate-0.9.24/Nestimate/man/build_glasso.Rd | 5 Nestimate-0.9.24/Nestimate/man/build_hon.Rd | 45 Nestimate-0.9.24/Nestimate/man/build_honem.Rd | 31 Nestimate-0.9.24/Nestimate/man/build_hypa.Rd | 37 Nestimate-0.9.24/Nestimate/man/build_hypergraph.Rd | 10 Nestimate-0.9.24/Nestimate/man/build_ising.Rd | 7 Nestimate-0.9.24/Nestimate/man/build_mcml.Rd | 142 + Nestimate-0.9.24/Nestimate/man/build_mcml_pc.Rd | 67 Nestimate-0.9.24/Nestimate/man/build_mlvar.Rd | 93 Nestimate-0.9.24/Nestimate/man/build_mmm.Rd | 74 Nestimate-0.9.24/Nestimate/man/build_mogen.Rd | 64 Nestimate-0.9.24/Nestimate/man/build_network.Rd | 121 - Nestimate-0.9.24/Nestimate/man/build_pcor.Rd | 5 Nestimate-0.9.24/Nestimate/man/build_simplicial.Rd | 52 Nestimate-0.9.24/Nestimate/man/build_tna.Rd | 8 Nestimate-0.9.24/Nestimate/man/casedrop_reliability.Rd | 79 Nestimate-0.9.24/Nestimate/man/centrality_stability.Rd | 100 Nestimate-0.9.24/Nestimate/man/certainty.Rd | 23 Nestimate-0.9.24/Nestimate/man/chain_structure.Rd | 71 Nestimate-0.9.24/Nestimate/man/clique_expansion.Rd | 13 Nestimate-0.9.24/Nestimate/man/cluster_choice.Rd | 71 Nestimate-0.9.24/Nestimate/man/cluster_diagnostics.Rd | 38 Nestimate-0.9.24/Nestimate/man/cluster_mmm.Rd | 10 Nestimate-0.9.24/Nestimate/man/cluster_summary.Rd | 139 - Nestimate-0.9.24/Nestimate/man/coefs.Rd | 29 Nestimate-0.9.24/Nestimate/man/compare_mmm.Rd | 34 Nestimate-0.9.24/Nestimate/man/compare_model.Rd | 63 Nestimate-0.9.24/Nestimate/man/compare_networks.Rd |only Nestimate-0.9.24/Nestimate/man/comparison_tables.Rd |only Nestimate-0.9.24/Nestimate/man/composites.Rd |only Nestimate-0.9.24/Nestimate/man/cooccurrence.Rd | 15 Nestimate-0.9.24/Nestimate/man/distribution_plot.Rd | 35 Nestimate-0.9.24/Nestimate/man/effects_table.Rd |only Nestimate-0.9.24/Nestimate/man/entropy_bayes.Rd | 44 Nestimate-0.9.24/Nestimate/man/entropy_network.Rd | 5 Nestimate-0.9.24/Nestimate/man/entropy_trajectory.Rd | 47 Nestimate-0.9.24/Nestimate/man/estimate_network.Rd | 19 Nestimate-0.9.24/Nestimate/man/evaluate_links.Rd | 13 Nestimate-0.9.24/Nestimate/man/extract_edges.Rd | 9 Nestimate-0.9.24/Nestimate/man/extract_initial_probs.Rd | 26 Nestimate-0.9.24/Nestimate/man/extract_pathways.Rd |only Nestimate-0.9.24/Nestimate/man/extract_transition_matrix.Rd | 21 Nestimate-0.9.24/Nestimate/man/frequencies.Rd | 23 Nestimate-0.9.24/Nestimate/man/hypergraph_centrality.Rd | 9 Nestimate-0.9.24/Nestimate/man/hypergraph_cluster.Rd |only Nestimate-0.9.24/Nestimate/man/hypergraph_laplacian.Rd |only Nestimate-0.9.24/Nestimate/man/hypergraph_measures.Rd | 12 Nestimate-0.9.24/Nestimate/man/hypergraph_transduction.Rd |only Nestimate-0.9.24/Nestimate/man/item_loadings.Rd |only Nestimate-0.9.24/Nestimate/man/loading_stability.Rd | 36 Nestimate-0.9.24/Nestimate/man/long-data.Rd | 9 Nestimate-0.9.24/Nestimate/man/long_to_wide.Rd | 13 Nestimate-0.9.24/Nestimate/man/macro_network.Rd |only Nestimate-0.9.24/Nestimate/man/magnitude_difference.Rd | 26 Nestimate-0.9.24/Nestimate/man/mark_first_state.Rd | 10 Nestimate-0.9.24/Nestimate/man/mark_terminal_state.Rd | 11 Nestimate-0.9.24/Nestimate/man/markov_order_test.Rd | 87 Nestimate-0.9.24/Nestimate/man/markov_stability.Rd | 44 Nestimate-0.9.24/Nestimate/man/mogen_transitions.Rd | 17 Nestimate-0.9.24/Nestimate/man/mosaic_analysis.Rd | 46 Nestimate-0.9.24/Nestimate/man/mosaic_plot.Rd | 40 Nestimate-0.9.24/Nestimate/man/nct.Rd | 63 Nestimate-0.9.24/Nestimate/man/net_aggregate_weights.Rd | 3 Nestimate-0.9.24/Nestimate/man/net_centrality.Rd | 89 Nestimate-0.9.24/Nestimate/man/net_edge_betweenness.Rd | 30 Nestimate-0.9.24/Nestimate/man/net_pruning_details.Rd | 9 Nestimate-0.9.24/Nestimate/man/network_reliability.Rd | 38 Nestimate-0.9.24/Nestimate/man/outcome_model.Rd |only Nestimate-0.9.24/Nestimate/man/passage_time.Rd | 42 Nestimate-0.9.24/Nestimate/man/path_counts.Rd | 12 Nestimate-0.9.24/Nestimate/man/path_dependence.Rd | 39 Nestimate-0.9.24/Nestimate/man/pathways.Rd | 44 Nestimate-0.9.24/Nestimate/man/permutation.Rd | 255 ++ Nestimate-0.9.24/Nestimate/man/permutation_diagnostics.Rd |only Nestimate-0.9.24/Nestimate/man/persistence_landscape.Rd | 21 Nestimate-0.9.24/Nestimate/man/persistent_homology.Rd | 42 Nestimate-0.9.24/Nestimate/man/plot_mosaic.Rd | 7 Nestimate-0.9.24/Nestimate/man/plot_state_frequencies.Rd | 84 Nestimate-0.9.24/Nestimate/man/predict_links.Rd | 38 Nestimate-0.9.24/Nestimate/man/predictability.Rd | 28 Nestimate-0.9.24/Nestimate/man/prepare.Rd | 33 Nestimate-0.9.24/Nestimate/man/prepare_onehot.Rd | 10 Nestimate-0.9.24/Nestimate/man/q_analysis.Rd | 23 Nestimate-0.9.24/Nestimate/man/register_estimator.Rd | 4 Nestimate-0.9.24/Nestimate/man/rename_models.Rd | 16 Nestimate-0.9.24/Nestimate/man/sequence_compare.Rd | 86 Nestimate-0.9.24/Nestimate/man/sequence_plot.Rd | 188 + Nestimate-0.9.24/Nestimate/man/session_ids.Rd |only Nestimate-0.9.24/Nestimate/man/set_state_colors.Rd |only Nestimate-0.9.24/Nestimate/man/simplicial_features.Rd |only Nestimate-0.9.24/Nestimate/man/srl_strategies.Rd | 6 Nestimate-0.9.24/Nestimate/man/state_colors.Rd |only Nestimate-0.9.24/Nestimate/man/state_distribution.Rd | 20 Nestimate-0.9.24/Nestimate/man/state_frequencies.Rd | 6 Nestimate-0.9.24/Nestimate/man/subtract_networks.Rd | 18 Nestimate-0.9.24/Nestimate/man/trajectories.Rd | 11 Nestimate-0.9.24/Nestimate/man/transition_entropy.Rd | 46 Nestimate-0.9.24/Nestimate/man/validate_netobject.Rd | 2 Nestimate-0.9.24/Nestimate/man/verify_simplicial.Rd | 8 Nestimate-0.9.24/Nestimate/man/vertex_bootstrap.Rd | 34 Nestimate-0.9.24/Nestimate/man/vertex_compare.Rd | 34 Nestimate-0.9.24/Nestimate/man/wide_to_long.Rd | 20 Nestimate-0.9.24/Nestimate/man/wtna.Rd | 23 Nestimate-0.9.24/Nestimate/tests/testthat.R | 4 Nestimate-0.9.24/Nestimate/tests/testthat/helper-simulate.R | 83 Nestimate-0.9.24/Nestimate/tests/testthat/test-as_htna.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-as_netobject.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-bipartite_groups.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-boot_glasso.R | 60 Nestimate-0.9.24/Nestimate/tests/testthat/test-bootstrap-block.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-bootstrap_network.R | 6 Nestimate-0.9.24/Nestimate/tests/testthat/test-build_clusters.R | 106 Nestimate-0.9.24/Nestimate/tests/testthat/test-build_network.R | 12 Nestimate-0.9.24/Nestimate/tests/testthat/test-centrality_stability.R | 51 Nestimate-0.9.24/Nestimate/tests/testthat/test-chain_structure.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-clique_expansion.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-compare_networks-actor.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-compare_networks.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-cooccurrence.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-covariate-estimators.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-distribution_plot.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-edge-betweenness.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-estimate_network.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-estimator_ising.R | 65 Nestimate-0.9.24/Nestimate/tests/testthat/test-estimators-ngram-gap-reverse.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-extract_pathways.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-fix-FIX1.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-fix-FIX3.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-fix-FIX4.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-fix-FIX5.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-fix-FIX6.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-fix-FIX7.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-fix-FIX8.R | 15 Nestimate-0.9.24/Nestimate/tests/testthat/test-fix-codex-mgm-group.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-fix-codex.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-fix-mgm-typewarn.R | 26 Nestimate-0.9.24/Nestimate/tests/testthat/test-frequencies.R | 40 Nestimate-0.9.24/Nestimate/tests/testthat/test-gimme.R | 824 +------ Nestimate-0.9.24/Nestimate/tests/testthat/test-glasso-pure.R | 140 - Nestimate-0.9.24/Nestimate/tests/testthat/test-honem.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-hypa.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-hypergraph.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-hypergraph_centrality.R | 21 Nestimate-0.9.24/Nestimate/tests/testthat/test-hypergraph_laplacian.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-hypergraph_measures.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-import_onehot.R | 91 Nestimate-0.9.24/Nestimate/tests/testthat/test-link_prediction.R | 16 Nestimate-0.9.24/Nestimate/tests/testthat/test-macro_network.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-magnitude-difference.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-markov.R | 22 Nestimate-0.9.24/Nestimate/tests/testthat/test-markov_order.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-mcml.R | 99 Nestimate-0.9.24/Nestimate/tests/testthat/test-mcml_pc.R | 110 Nestimate-0.9.24/Nestimate/tests/testthat/test-mcml_repartition.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-metadata-cols.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-mlvar.R | 9 Nestimate-0.9.24/Nestimate/tests/testthat/test-mosaic_analysis.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-mosaic_plot.R | 34 Nestimate-0.9.24/Nestimate/tests/testthat/test-outcome_model.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-path_dependence.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-pathways.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-permutation-block.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-permutation.R | 6 Nestimate-0.9.24/Nestimate/tests/testthat/test-permutation_diagnostics.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-plot-family-class.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-plot_state_frequencies.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-prepare-grouping.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-prepare-timezone.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-prepare.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-prepare_onehot-grouping.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-sequence_plot.R | 47 Nestimate-0.9.24/Nestimate/tests/testthat/test-sequence_plot_mcml.R | 494 ++++ Nestimate-0.9.24/Nestimate/tests/testthat/test-sequence_terminal.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-session_ids.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-simplicial_features.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-state_colors.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-transition_entropy.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-utils.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-vertex_bootstrap.R | 3 Nestimate-0.9.24/Nestimate/tests/testthat/test-windowed-fixes.R |only Nestimate-0.9.24/Nestimate/tests/testthat/test-wtna.R | 139 - 425 files changed, 9415 insertions(+), 8145 deletions(-)
Title: Functions to Assist Design and Analysis of Agronomic Experiments
Description: Provides functions to aid in the design and analysis of
agronomic and agricultural experiments through easy access to
documentation and helper functions, especially for users who are
learning these concepts. While not required for most functionality,
this package enhances the `asreml` package which provides a
computationally efficient algorithm for fitting mixed models
using Residual Maximum Likelihood. It is a commercial package
that can be purchased as 'ASReml-R' from 'VSNi'
<https://vsni.co.uk/>, who will supply a zip file for local
installation/updating (see <https://asreml.kb.vsni.co.uk/>).
Author: Sharon Nielsen [aut],
Sam Rogers [aut, cre],
Annie Conway [aut],
Michael Mumford [ctb],
Adelaide University [cph, fnd] ,
Grains Research and Development Corporation [cph, fnd]
Maintainer: Sam Rogers <biometrytraining@adelaide.edu.au>
Diff between biometryassist versions 1.5.0 dated 2026-06-17 and 1.5.1 dated 2026-10-07
DESCRIPTION | 12 LICENSE | 4 MD5 | 121 ++-- NAMESPACE | 206 ++++--- NEWS.md | 58 +- R/comparison_helpers.R | 67 +- R/export_excel.R | 16 R/mct.R | 66 +- R/pairwise_comparisons.R | 42 - R/prediction_methods.R | 608 +++++++++++++++++------ R/reference_comparisons.R | 17 R/resplot.R | 20 R/use_template.R | 8 R/utils.R | 79 ++ build/vignette.rds |binary inst/CITATION |only inst/doc/choosing-multiple-comparisons.html | 25 inst/doc/installing-asreml-r.html | 21 inst/doc/installing-asreml-r.qmd | 10 inst/doc/plot_annotation.html | 11 man/asreml_denominator_df.Rd |only man/biometryassist-deprecated.Rd | 70 +- man/biometryassist.Rd | 4 man/export_design_to_excel.Rd | 15 man/figures/logo.svg |only man/get_predictions.Rd | 91 +++ man/handle_deprecated_param.Rd | 15 man/handle_removed_param.Rd |only man/multiple_comparisons.Rd | 86 ++- man/pairwise_comparisons.Rd | 84 ++- man/predictions_from_emmeans.Rd | 23 man/process_aliased.Rd | 8 man/reference_comparisons.Rd | 84 ++- man/resplt-deprecated.Rd | 68 +- man/response_label.Rd |only man/sed_from_vcov.Rd |only man/strip_asreml_specials.Rd |only man/use_template.Rd | 2 man/vario_df.Rd | 62 +- tests/testthat.R | 8 tests/testthat/_snaps/all-w2.md | 124 ++-- tests/testthat/_snaps/design.md | 440 ++++++++-------- tests/testthat/_snaps/mct.md | 8 tests/testthat/_snaps/mct/lme4-output.svg | 65 +- tests/testthat/_snaps/mct/nlme-output.svg | 4 tests/testthat/_snaps/mct/sommer-mmes-output.svg | 8 tests/testthat/_snaps/prediction_methods.md | 28 - tests/testthat/_snaps/utility_functions.md | 34 - tests/testthat/helper-expectations.R | 11 tests/testthat/setup-satab.R | 74 +- tests/testthat/test-all-w2.r | 3 tests/testthat/test-comparison_helpers.R | 37 + tests/testthat/test-design.R | 2 tests/testthat/test-export_excel.R | 6 tests/testthat/test-mct.R | 167 ++++-- tests/testthat/test-pairwise_comparisons.R | 42 - tests/testthat/test-prediction_methods.R | 549 +++++++++++++------- tests/testthat/test-reference_comparisons.R | 17 tests/testthat/test-resplot.R | 1 tests/testthat/test-use_template.R | 17 tests/testthat/test-utility_functions.R | 46 + tests/testthat/test-variogram.r | 3 tests/testthat/test-zzz_install_asreml.R | 7 tests/testthat/testthat-problems.rds |binary vignettes/installing-asreml-r.qmd | 10 65 files changed, 2442 insertions(+), 1272 deletions(-)
More information about biometryassist at CRAN
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Title: Authentication Helpers for 'Snowflake'
Description: Authentication helpers for 'Snowflake'.
It provides compatibility with authentication approaches supported
by the 'Snowflake Connector for Python' <https://pypi.org/project/snowflake-connector-python>
and the 'Snowflake CLI' <https://pypi.org/project/snowflake-cli>.
Author: Aaron Jacobs [aut, cre],
E. David Aja [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Aaron Jacobs <aaron.jacobs@posit.co>
Diff between snowflakeauth versions 0.3.0 dated 2026-08-31 and 0.3.1 dated 2026-10-07
DESCRIPTION | 16 ++++++++-------- MD5 | 16 +++++++++------- NEWS.md | 4 ++++ R/config.R | 24 ++++++++++++++++++++++-- R/credentials.R | 6 +++++- R/pat.R |only README.md | 2 +- man/snowflake_connection.Rd | 5 +++-- man/snowflakeauth-package.Rd | 4 ++-- tests/testthat/test-pat.R |only 10 files changed, 54 insertions(+), 23 deletions(-)
Title: Useful Tools for Structural Equation Modeling
Description: Provides miscellaneous tools for structural equation modeling,
many of which extend the 'lavaan' package. For example, latent
interactions can be estimated using product indicators (Lin et al.,
2010, <doi:10.1080/10705511.2010.488999>) and simple effects probed;
analytical power analyses can be conducted (Jak et al., 2021,
<doi:10.3758/s13428-020-01479-0>); and scale reliability
can be estimated based on estimated factor-model parameters.
Author: Terrence D. Jorgensen [aut, cre] ,
Sunthud Pornprasertmanit [aut] ,
Alexander M. Schoemann [aut] ,
Yves Rosseel [aut] ,
Patrick Miller [ctb],
Corbin Quick [ctb],
Mauricio Garnier-Villarreal [ctb] ,
James Selig [ctb],
Aaron Boulton [ctb],
Kristopher P [...truncated...]
Maintainer: Terrence D. Jorgensen <TJorgensen314@gmail.com>
Diff between semTools versions 0.5-9 dated 2026-07-13 and 0.5-10 dated 2026-10-07
DESCRIPTION | 12 ++-- MD5 | 30 +++++----- NAMESPACE | 120 +++++++++++++++++++++-------------------- NEWS.md | 11 +++ R/fitIndices.R | 45 +++++++++++---- R/measEq.R | 65 +++++++++++++--------- R/permuteMeasEq.R | 68 ++++++++++++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/partialInvariance.pdf |binary man/chisqSmallN.Rd | 18 ++++-- man/dat2way.Rd | 2 man/dat3way.Rd | 2 man/datCat.Rd | 2 man/exLong.Rd | 2 man/simParcel.Rd | 2 16 files changed, 236 insertions(+), 143 deletions(-)
Title: Confounder-Adjusted Survival Curves and Cumulative Incidence
Functions
Description: Estimate and plot confounder-adjusted survival curves using
either 'Direct Adjustment', 'Direct Adjustment with Pseudo-Values',
various forms of 'Inverse Probability of Treatment Weighting', two
forms of 'Augmented Inverse Probability of Treatment Weighting',
'Empirical Likelihood Estimation' or 'Targeted Maximum Likelihood Estimation'.
Also includes a significance test for the difference
between two adjusted survival curves and the calculation of adjusted
restricted mean survival times. Additionally enables the user to
estimate and plot cause-specific confounder-adjusted cumulative
incidence functions in the competing risks setting using the same
methods (with some exceptions).
For details, see Denz et. al (2023) <doi:10.1002/sim.9681>.
Author: Robin Denz [aut, cre]
Maintainer: Robin Denz <robin.denz@rub.de>
Diff between adjustedCurves versions 0.11.4 dated 2026-02-05 and 0.12.0 dated 2026-10-07
DESCRIPTION | 18 MD5 | 187 NAMESPACE | 24 NEWS.md | 20 R/adjustedcif.r | 28 R/adjustedsurv.r | 39 R/helper_functions.r | 10 R/input_checks.r | 51 R/integral_calculation.r | 5 R/method_aiptw.r | 2 R/method_aiptw_pseudo.r | 2 R/method_direct.r | 76 R/method_direct_pseudo.r | 2 R/method_emp_lik.r | 1 R/method_iptw.r | 13 R/method_iptw_cens.r |only R/method_iptw_pseudo.r | 2 R/method_iv_2SRIF.r | 1 R/method_matching.r | 2 R/method_prox_aiptw.r | 1 R/method_prox_iptw.r | 1 R/method_stratification.r | 3 R/method_unadjusted.r | 2 inst/doc/method_overview.R | 33 inst/doc/method_overview.html | 64 inst/doc/method_overview.rmd | 33 man/adjustedCurves.Rd | 2 man/adjustedcif.Rd | 5 man/adjustedsurv.Rd | 592 +- man/cif_aalen_johansen.Rd | 9 man/cif_aiptw.Rd | 16 man/cif_aiptw_pseudo.Rd | 14 man/cif_direct.Rd | 35 man/cif_direct_pseudo.Rd | 12 man/cif_iptw.Rd | 14 man/cif_iptw_pseudo.Rd | 19 man/cif_matching.Rd | 11 man/models_cif_direct.Rd | 109 man/surv_aiptw.Rd | 15 man/surv_aiptw_pseudo.Rd | 17 man/surv_direct.Rd | 292 - man/surv_direct_pseudo.Rd | 16 man/surv_emp_lik.Rd | 17 man/surv_iptw_cens.Rd |only man/surv_iptw_cox.Rd | 17 man/surv_iptw_km.Rd | 19 man/surv_iptw_pseudo.Rd | 23 man/surv_iv_2SRIF.Rd | 13 man/surv_km.Rd | 7 man/surv_matching.Rd | 11 man/surv_prox_aiptw.Rd | 17 man/surv_prox_iptw.Rd | 17 man/surv_strat_amato.Rd | 9 man/surv_strat_cupples.Rd | 9 man/surv_strat_nieto.Rd | 149 tests/testthat/_snaps/adjustedsurv.method_S3.md | 14 tests/testthat/_snaps/plot_curve_diff/plot-cif-no-arguments.svg | 2 tests/testthat/_snaps/plot_curve_diff/plot-no-arguments.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-reversed-differences.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-all-texts.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-conf-int-boot.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-conf-int.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-fill-area-lines.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-fill-area-steps.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-integral-linear.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-integral-test.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-integral.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-lines-ci.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-lines.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-loess.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-much-stuff.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-none.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-p-value-linear.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-p-value-test.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-p-value.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-points-ci.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-with-points.svg | 4 tests/testthat/_snaps/plot_curve_diff/plot-without-line-at-0.svg | 4 tests/testthat/_snaps/plot_curve_ratio/plot-cif-no-arguments.svg | 2 tests/testthat/_snaps/plot_curve_ratio/plot-no-arguments.svg | 4 tests/testthat/_snaps/plot_curve_ratio/plot-reversed-differences.svg | 4 tests/testthat/_snaps/plot_curve_ratio/plot-with-conf-int-boot.svg | 4 tests/testthat/_snaps/plot_curve_ratio/plot-with-conf-int.svg | 4 tests/testthat/_snaps/plot_curve_ratio/plot-with-lines-ci.svg | 4 tests/testthat/_snaps/plot_curve_ratio/plot-with-lines.svg | 4 tests/testthat/_snaps/plot_curve_ratio/plot-without-line-at-ref.svg | 4 tests/testthat/test_MI_adjustedcif.r | 4 tests/testthat/test_MI_adjustedsurv.r | 37 tests/testthat/test_adjustedsurv.method_S3.r | 43 tests/testthat/test_check_inputs_adjustedcif.r | 254 tests/testthat/test_check_inputs_adjustedsurv.r | 2885 +++++----- tests/testthat/test_cif_direct.r | 1312 ++-- tests/testthat/test_read_from_fun.r | 142 tests/testthat/test_surv_iptw_cens.r |only tests/testthat/test_surv_prox_aiptw.r | 3 vignettes/method_overview.rmd | 33 96 files changed, 3798 insertions(+), 3151 deletions(-)
More information about adjustedCurves at CRAN
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Title: Self-Controlled Cohort Population-Level Estimation
Description: Estimates incidence rate ratios by comparing time exposed with time unexposed among an exposed cohort using
self-controlled cohort methodology as described in Ryan et al. (2013) <doi:10.1002/pds.3457>.
Functions used for empirical calibration of effect estimates, confidence intervals, and p-values are included to control
for residual bias.
Author: Jamie Gilbert [cre, aut] ,
Martijn Schuemie [aut],
Patrick Ryan [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Jamie Gilbert <gilbert@ohdsi.org>
Diff between SelfControlledCohort versions 2.0.0 dated 2026-06-17 and 2.1.0 dated 2026-10-07
DESCRIPTION | 12 MD5 | 38 +- NEWS.md | 18 + R/Analyses.R | 4 R/CreateArgFunctions.R | 11 R/DiagnosticStatistics.R | 48 ++- R/Diagnostics.R | 443 +++++++++++++++++++++---------- R/RiskWindows.R | 24 + R/RunAnalyses.R | 29 ++ R/SelfControlledCohort.R | 372 +++++++++++++++++--------- R/StrategusModuleFunctions.R | 64 +++- inst/doc/StudyDiagnostics.html | 4 inst/doc/UsingSelfControlledCohort.html | 149 +++++----- man/createRunSelfControlledCohortArgs.Rd | 14 man/createSccAnalysis.Rd | 4 man/execute.Rd | 4 man/runSccDiagnostics.Rd | 10 man/runSelfControlledCohort.Rd | 10 tests/testthat/test-Blinding.R | 178 ++++++++---- tests/testthat/test-SccIntegration.R | 248 +++++++++++++++++ 20 files changed, 1253 insertions(+), 431 deletions(-)
More information about SelfControlledCohort at CRAN
Permanent link
Title: Concise and Efficient Tools for Everyday Statistical Production
Description: A set of concise and efficient tools for statistical production. Can also be used for data management.
In statistical production, you deal with complex data and need to control your process at each step of your work.
Concise functions are very helpful, because you do not hesitate to use them.
The following functions are included in the package.
'dup' checks duplicates.
'miss' checks missing values.
'sums' computes sums of all numeric columns.
'tac' computes contingency table of all columns.
'toc' compares two tables, spotting significant deviations.
'chi2_find' compares columns within a data.frame, spotting related categories of (a more complex function).
Author: Vincent Reduron [cre, aut]
Maintainer: Vincent Reduron <vincent.reduron@laposte.net>
Diff between ProduceR versions 1.3 dated 2026-06-18 and 1.4 dated 2026-10-07
DESCRIPTION | 11 +++++----- MD5 | 29 ++++++++++++++------------- NAMESPACE | 14 +++++++++---- NEWS.md | 6 +++++ R/chi2_find.R | 3 +- R/dup.R | 30 ++++++++++++++-------------- R/miss.R | 13 +++++++----- R/sums.R | 24 +++++++++++++++++++++- R/tac.R | 62 +++++++++++++++++++++++++++++++--------------------------- R/toc.R | 26 ++++++++++++++++-------- R/utils.R | 2 - man/dup.Rd | 2 - man/miss.Rd | 6 ++--- man/sums.Rd |only man/tac.Rd | 9 +++++--- man/toc.Rd | 16 +++++++++++++- 16 files changed, 163 insertions(+), 90 deletions(-)
Title: Contrast and Separation Metrics for Phonological Categories
Description: Computes and compares multiple measures of separation and overlap
between phonological categories (for example vowels or consonants) in
arbitrary multi-dimensional acoustic spaces such as formant values,
mel-frequency cepstral coefficients (MFCCs), duration, or learned
embeddings. The main entry point, phontrast(), reports several contrast
metrics in one call -- Jensen-Shannon divergence and distance (Lin, 1991)
<doi:10.1109/18.61115>, the Pillai-Bartlett trace, Bhattacharyya distance
and affinity, Mahalanobis distance, and proportional overlap -- globally or
by group on a common separation-oriented scale, with bootstrap confidence
intervals. rank_contrasts() implements a measurement protocol for ranking
speakers' contrasts by Jensen-Shannon distance and checking the ranking
against Pillai, with sample-size licensing and a bandwidth-sensitivity
check. Also provides utilities for preparing estimates for downstream
modelling such as generalized additive models and mixed-effects mod [...truncated...]
Author: Grant M. Berry [aut, cre]
Maintainer: Grant M. Berry <berry.grant@gmail.com>
Diff between phontrast versions 2.4.1 dated 2026-09-01 and 2.5.0 dated 2026-10-07
DESCRIPTION | 12 ++- MD5 | 75 ++++++++++++------- NAMESPACE | 9 ++ NEWS.md | 85 +++++++++++++++++++++ R/compare_overlap_metrics.R | 121 +++++++++++++++++++++---------- R/data.R |only R/jsd_kde_nd.R | 16 +++- R/jsd_wrappers.R | 10 ++ R/kernel_family.R |only R/percent_overlap.R | 18 ++++ R/percentile_rank.R |only R/phontrast-package.R | 26 ++++++ R/plot_contrast.R | 50 ++++++++---- R/rank_contrasts.R |only R/ranking_plots.R |only R/recommended_estimator.R |only R/utils.R | 74 ++++++++++++++++-- README.md | 41 +++++++++- build/vignette.rds |binary data |only inst/CITATION | 27 ++++++ inst/doc/jasa-protocol.R |only inst/doc/jasa-protocol.Rmd |only inst/doc/jasa-protocol.html |only inst/doc/multidimensional-workflows.R | 16 ++-- inst/doc/multidimensional-workflows.html | 7 + inst/doc/quick-start.R | 18 ++-- inst/doc/quick-start.html | 7 + man/compare_overlap_metrics.Rd | 9 ++ man/estimate_jsd.Rd | 6 + man/estimate_overlap.Rd | 4 + man/inspect_contrast.Rd |only man/jsd_kde_nd.Rd | 10 ++ man/percent_overlap_kde.Rd | 6 + man/percentile_rank.Rd |only man/phontrast-package.Rd | 28 ++++++- man/phontrast.Rd | 30 ++++++- man/plot.phontrast_ranking.Rd |only man/plot_contrast.Rd | 7 + man/plot_rank_agreement.Rd |only man/protocol_floors.Rd |only man/rank_contrasts.Rd |only man/recommended_estimator.Rd |only man/vowel_cohort.Rd |only tests/testthat/test-citation.R | 3 tests/testthat/test-kernel-family.R |only tests/testthat/test-protocol-helpers.R |only tests/testthat/test-rank-contrasts.R |only tests/testthat/test-ranking-plots.R |only vignettes/jasa-protocol.Rmd |only 50 files changed, 581 insertions(+), 134 deletions(-)
Title: Pre-Compiled 'CmdStan' Models in R Packages
Description: Similar to 'rstantools' for 'rstan',
the 'instantiate' package builds pre-compiled
'CmdStan' models into CRAN-ready statistical modeling R packages.
The models compile once during installation,
the executables live inside the file systems of their respective packages,
and users have the full power and convenience of
'cmdstanr' without any additional compilation after package installation.
This approach saves time and helps R package developers
migrate from 'rstan' to the more modern 'cmdstanr'.
Packages 'rstantools', 'cmdstanr', 'stannis', and
'stanapi' are similar Stan clients with different objectives.
Author: William Michael Landau [aut, cre] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between instantiate versions 0.2.3 dated 2024-10-02 and 0.2.4 dated 2026-10-07
DESCRIPTION | 12 +++---- MD5 | 48 ++++++++++++++--------------- NAMESPACE | 20 +++++++----- NEWS.md | 12 +++++++ R/stan_cmdstan_path.R | 3 + R/stan_package_clean.R | 9 +++-- R/stan_package_compile.R | 26 ++++++++++----- R/stan_package_model.R | 45 ++++++++++++++++++--------- R/utils_assert.R | 2 - inst/example/DESCRIPTION | 2 - inst/example/R/package.R | 1 inst/example/github/workflows/check.yaml | 4 +- inst/example/gitignore | 10 +++--- inst/example/man/example-package.Rd | 1 inst/example/rbuildignore | 2 + man/stan_cmdstan_exists.Rd | 4 +- man/stan_cmdstan_path.Rd | 10 +++--- man/stan_cmdstan_version.Rd | 4 +- man/stan_package_clean.Rd | 16 ++++----- man/stan_package_compile.Rd | 21 ++++++------ man/stan_package_configure.Rd | 10 +++--- man/stan_package_model.Rd | 16 ++++++--- man/stan_package_model_files.Rd | 10 +++--- tests/testthat/test-stan_cmdstan_path.R | 5 +++ tests/testthat/test-stan_package_compile.R | 12 +++++++ 25 files changed, 188 insertions(+), 117 deletions(-)
Title: Flexible Record Linkage and Linked Data Quality Assessment
Description: Probabilistically link records that refer to the same entities across two data sources without a unique identifier, using partially identifying variables such as product code, brand, category, birth year, sex or postal code. 'FlexRL' implements a Stochastic Expectation Maximisation (StEM) approach to Record Linkage (Robach et al., 2025, <doi:10.1093/jrsssc/qlaf016>). The model accounts for registration errors (missing values and mistakes) and for variables that change over time, enforces one-to-one assignment, and has a low memory footprint. The package also provides tools for inference on linked data: two estimators of the false discovery proportion of a linkage (Robach et al., 2025, <doi:10.1002/sim.70292>), based on linkage scores and on synthetic data, and diagnostics comparing the linked sample with the source data. These tools also apply on the linkage output of other record linkage packages.
Author: Kayane ROBACH [aut, cre, cph] ,
Michel H. HOF [aut, cph]
Maintainer: Kayane ROBACH <k.c.robach@amsterdamumc.nl>
Diff between FlexRL versions 0.1.1 dated 2025-09-26 and 1.0.0 dated 2026-10-07
FlexRL-0.1.1/FlexRL/README.md |only FlexRL-0.1.1/FlexRL/inst/doc/FlexRL-vignette.R |only FlexRL-0.1.1/FlexRL/inst/doc/FlexRL-vignette.Rmd |only FlexRL-0.1.1/FlexRL/inst/doc/FlexRL-vignette.html |only FlexRL-0.1.1/FlexRL/man/DataCreation.Rd |only FlexRL-0.1.1/FlexRL/man/Deltafind.Rd |only FlexRL-0.1.1/FlexRL/man/ExpandGrid.Rd |only FlexRL-0.1.1/FlexRL/man/F2.Rd |only FlexRL-0.1.1/FlexRL/man/F33.Rd |only FlexRL-0.1.1/FlexRL/man/SurvivalUnstable.Rd |only FlexRL-0.1.1/FlexRL/man/cartesianProduct.Rd |only FlexRL-0.1.1/FlexRL/man/createDataAlpha.Rd |only FlexRL-0.1.1/FlexRL/man/generateSequence.Rd |only FlexRL-0.1.1/FlexRL/man/initDeltaMap.Rd |only FlexRL-0.1.1/FlexRL/man/launchNaive.Rd |only FlexRL-0.1.1/FlexRL/man/logPossibleConfig.Rd |only FlexRL-0.1.1/FlexRL/man/loglik.Rd |only FlexRL-0.1.1/FlexRL/man/loglikSurvival.Rd |only FlexRL-0.1.1/FlexRL/man/sampleD.Rd |only FlexRL-0.1.1/FlexRL/man/sampleH.Rd |only FlexRL-0.1.1/FlexRL/man/sampleL.Rd |only FlexRL-0.1.1/FlexRL/man/sampleNL.Rd |only FlexRL-0.1.1/FlexRL/man/sspaste2.Rd |only FlexRL-0.1.1/FlexRL/man/stEM.Rd |only FlexRL-0.1.1/FlexRL/vignettes/FlexRL-vignette.Rmd |only FlexRL-0.1.1/FlexRL/vignettes/exA.csv |only FlexRL-0.1.1/FlexRL/vignettes/exB.csv |only FlexRL-1.0.0/FlexRL/DESCRIPTION | 22 FlexRL-1.0.0/FlexRL/MD5 | 110 FlexRL-1.0.0/FlexRL/NAMESPACE | 53 FlexRL-1.0.0/FlexRL/NEWS.md | 25 FlexRL-1.0.0/FlexRL/R/FlexRecordLinkage.r | 4640 +++++++--- FlexRL-1.0.0/FlexRL/R/RcppExports.R | 146 FlexRL-1.0.0/FlexRL/R/zzz.R | 208 FlexRL-1.0.0/FlexRL/build/partial.rdb |only FlexRL-1.0.0/FlexRL/build/vignette.rds |binary FlexRL-1.0.0/FlexRL/inst/CITATION | 18 FlexRL-1.0.0/FlexRL/inst/doc/FlexRL-RL-vignette.Rmd |only FlexRL-1.0.0/FlexRL/inst/doc/FlexRL-RL-vignette.html |only FlexRL-1.0.0/FlexRL/man/FDP_score.Rd |only FlexRL-1.0.0/FlexRL/man/FDP_synth.Rd |only FlexRL-1.0.0/FlexRL/man/FlexRL.Rd | 214 FlexRL-1.0.0/FlexRL/man/RL_agreement.Rd |only FlexRL-1.0.0/FlexRL/man/RL_diagnostics.Rd |only FlexRL-1.0.0/FlexRL/man/StEM.Rd |only FlexRL-1.0.0/FlexRL/man/compute_RL_FDP_score.Rd |only FlexRL-1.0.0/FlexRL/man/compute_augmRL_FDP_synth.Rd |only FlexRL-1.0.0/FlexRL/man/create_data_alpha.Rd |only FlexRL-1.0.0/FlexRL/man/figures |only FlexRL-1.0.0/FlexRL/man/link_with_BRL.Rd |only FlexRL-1.0.0/FlexRL/man/link_with_FlexRL.Rd |only FlexRL-1.0.0/FlexRL/man/link_with_diyar.Rd |only FlexRL-1.0.0/FlexRL/man/link_with_fastLink.Rd |only FlexRL-1.0.0/FlexRL/man/link_with_fedmatch.Rd |only FlexRL-1.0.0/FlexRL/man/link_with_multilink.Rd |only FlexRL-1.0.0/FlexRL/man/link_with_reclin2.Rd |only FlexRL-1.0.0/FlexRL/man/log_lik.Rd |only FlexRL-1.0.0/FlexRL/man/log_possible_config.Rd |only FlexRL-1.0.0/FlexRL/man/mmd.Rd |only FlexRL-1.0.0/FlexRL/man/naive_linkage.Rd |only FlexRL-1.0.0/FlexRL/man/plot.FDP_curves.Rd |only FlexRL-1.0.0/FlexRL/man/plot.RL_diagnostics.Rd |only FlexRL-1.0.0/FlexRL/man/plot.discrepancy_curves.Rd |only FlexRL-1.0.0/FlexRL/man/plot_StEM_convergence.Rd |only FlexRL-1.0.0/FlexRL/man/plot_distributions.Rd |only FlexRL-1.0.0/FlexRL/man/plot_linkage_scores.Rd |only FlexRL-1.0.0/FlexRL/man/prepare_data.Rd |only FlexRL-1.0.0/FlexRL/man/print.RL_diagnostics.Rd |only FlexRL-1.0.0/FlexRL/man/prop_level.Rd |only FlexRL-1.0.0/FlexRL/man/simulateD.Rd | 179 FlexRL-1.0.0/FlexRL/man/simulateH.Rd | 157 FlexRL-1.0.0/FlexRL/man/simulate_data.Rd |only FlexRL-1.0.0/FlexRL/man/smd.Rd |only FlexRL-1.0.0/FlexRL/man/support_iou.Rd |only FlexRL-1.0.0/FlexRL/man/survival_model.Rd |only FlexRL-1.0.0/FlexRL/man/synthesise.Rd |only FlexRL-1.0.0/FlexRL/src/FlexRLfunctions.cpp | 1050 +- FlexRL-1.0.0/FlexRL/src/RcppExports.cpp | 51 FlexRL-1.0.0/FlexRL/vignettes/FlexRL-RL-block-vignette.Rmd.orig |only FlexRL-1.0.0/FlexRL/vignettes/FlexRL-RL-vignette.Rmd |only FlexRL-1.0.0/FlexRL/vignettes/FlexRL-RL-vignette.Rmd.orig |only FlexRL-1.0.0/FlexRL/vignettes/SHIW-full-results.csv |only FlexRL-1.0.0/FlexRL/vignettes/SHIW2016.csv |only FlexRL-1.0.0/FlexRL/vignettes/SHIW2020.csv |only FlexRL-1.0.0/FlexRL/vignettes/SHIWDataConditions.pdf |only FlexRL-1.0.0/FlexRL/vignettes/SHIWDataDictionary.pdf |only FlexRL-1.0.0/FlexRL/vignettes/ex-reg-NLTCS-82.csv |only FlexRL-1.0.0/FlexRL/vignettes/ex-reg-NLTCS-94.csv |only FlexRL-1.0.0/FlexRL/vignettes/ex-reg-SHIW-16.csv |only FlexRL-1.0.0/FlexRL/vignettes/ex-reg-SHIW-20.csv |only 90 files changed, 4432 insertions(+), 2441 deletions(-)
Title: Causal Effect Estimation Under Spatial Confounding and
Interference
Description: Implements the distance-adjusted propensity score with interference
(iDAPS) and recoverU+ methods for estimating the average treatment effect on
the treated (ATT) from spatial observational data in the presence of both
spatial confounding and spatial interference. iDAPS matches units on a
data-driven composite of propensity-score distance, spatial proximity and
neighbourhood-exposure distance. recoverU+ is a doubly robust estimator that
augments the propensity-score and control-outcome models with a partially
recovered spatial confounder and a neighbourhood-exposure term. The package
also provides the naive propensity score, DAPS and recoverU comparators,
a simulator for the spatial confounding/interference data-generating process
and spatial inference tools.
Author: Isqeel Ogunsola [aut, cre],
Olatunji Johnson [aut],
Thomas House [aut]
Maintainer: Isqeel Ogunsola <isqeel.ogunsola@postgrad.manchester.ac.uk>
Diff between spaci versions 0.1.1 dated 2026-09-21 and 0.2.0 dated 2026-10-07
spaci-0.1.1/spaci/inst/WORDLIST |only spaci-0.2.0/spaci/DESCRIPTION | 14 spaci-0.2.0/spaci/MD5 | 52 ++- spaci-0.2.0/spaci/NAMESPACE | 8 spaci-0.2.0/spaci/NEWS.md | 32 + spaci-0.2.0/spaci/R/bias-bound.R |only spaci-0.2.0/spaci/R/inference.R |only spaci-0.2.0/spaci/R/matching-estimators.R | 364 +++++++++++----------- spaci-0.2.0/spaci/R/matching.R | 72 +++- spaci-0.2.0/spaci/R/matern.R | 64 ++- spaci-0.2.0/spaci/R/plot.R | 214 ++++++------ spaci-0.2.0/spaci/R/recoverU.R | 348 ++++++++++----------- spaci-0.2.0/spaci/R/simulate.R | 258 +++++++-------- spaci-0.2.0/spaci/README.md | 19 - spaci-0.2.0/spaci/inst/doc/spaci.html | 16 spaci-0.2.0/spaci/inst/legacy |only spaci-0.2.0/spaci/man/bias_bound.Rd |only spaci-0.2.0/spaci/man/boot_spatial.Rd |only spaci-0.2.0/spaci/man/daps.Rd | 6 spaci-0.2.0/spaci/man/idaps.Rd | 6 spaci-0.2.0/spaci/man/naive_ps.Rd | 15 spaci-0.2.0/spaci/man/print.spaci_bias_bound.Rd |only spaci-0.2.0/spaci/man/print.spaci_boot.Rd |only spaci-0.2.0/spaci/man/print.spaci_randtest.Rd |only spaci-0.2.0/spaci/man/print.spaci_vcov.Rd |only spaci-0.2.0/spaci/man/rand_test.Rd |only spaci-0.2.0/spaci/man/recoverU.Rd | 5 spaci-0.2.0/spaci/man/recoverUplus.Rd | 5 spaci-0.2.0/spaci/man/spatial_ate.Rd | 114 +++--- spaci-0.2.0/spaci/man/vcov_hac.Rd |only spaci-0.2.0/spaci/tests/testthat/test-fixes.R |only spaci-0.2.0/spaci/tests/testthat/test-inference.R |only 32 files changed, 901 insertions(+), 711 deletions(-)
Title: Rumen Gas Production Modeling, Comparison, and Visualization
Description: Provides tools for importing, processing,
visualizing, fitting, comparing, and interpreting
in vitro rumen gas production data. Supports ANKOM RF
workflows, generic gas production datasets, and
pressure-based measurements. Includes multiple kinetic
models, custom nonlinear models, model comparison
workflows, treatment-level ranking, diagnostic tools,
and visualization functions for rumen fermentation
studies.
Author: Arlan Araujo Rodrigues [aut, cre],
Hilario Cuquetto Mantovani [aut]
Maintainer: Arlan Araujo Rodrigues <araujorodrig@wisc.edu>
Diff between rumenGP versions 0.1.1 dated 2026-10-02 and 0.2.1 dated 2026-10-07
DESCRIPTION | 6 MD5 | 50 ++- NAMESPACE | 6 NEWS.md | 199 ++++++++----- R/fit_burr_xii.R |only R/fit_inverse_paralogistic.R |only R/fit_loglogistic.R |only R/summary.burr_xii_fit.R |only R/summary.inverse_paralogistic_fit.R |only R/summary.loglogistic_fit.R |only README.md | 172 ++++++++++- inst/WORDLIST | 2 inst/doc/getting-started.R | 21 + inst/doc/getting-started.Rmd | 237 +++++++++++++++ inst/doc/getting-started.html | 486 +++++++++++++++++++++++--------- inst/doc/importing-data.R | 41 +- inst/doc/importing-data.Rmd | 276 +++++++++++++++--- inst/doc/importing-data.html | 405 ++++++++++++++++++++------ inst/doc/interpreting-models.Rmd | 262 ++++++++++++++++- inst/doc/interpreting-models.html | 241 +++++++++++++++ inst/doc/model-equations.Rmd | 305 +++++++++++++++++--- inst/doc/model-equations.html | 374 +++++++++++++++++++++--- man/fit_burr_xii.Rd |only man/fit_inverse_paralogistic.Rd |only man/fit_loglogistic.Rd |only man/summary.burr_xii_fit.Rd |only man/summary.inverse_paralogistic_fit.Rd |only man/summary.loglogistic_fit.Rd |only vignettes/getting-started.Rmd | 237 +++++++++++++++ vignettes/importing-data.Rmd | 276 +++++++++++++++--- vignettes/interpreting-models.Rmd | 262 ++++++++++++++++- vignettes/model-equations.Rmd | 305 +++++++++++++++++--- 32 files changed, 3575 insertions(+), 588 deletions(-)
Title: Interface to the 'OpenGWAS' Database API
Description: Interface to the 'OpenGWAS' database API <https://api.opengwas.io/api/>. Includes a wrapper
to make generic calls to the API, plus convenience functions for
specific queries.
Author: Gibran Hemani [aut, cph] ,
Ben Elsworth [aut] ,
Tom Palmer [aut, cre] ,
Rita Rasteiro [aut]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
Diff between ieugwasr versions 1.1.0 dated 2025-07-31 and 1.2.0 dated 2026-10-07
DESCRIPTION | 23 +++++----- MD5 | 39 +++++++++--------- NAMESPACE | 6 +- NEWS.md | 32 ++++++++++++++ R/afl2.r | 10 ++-- R/api.R | 2 R/backwards.R | 2 R/ld_clump.R | 12 ++--- R/query.R | 61 ++++++++++++++-------------- R/variants.R | 8 +-- README.md | 4 - build/vignette.rds |binary inst/doc/guide.Rmd | 12 ++--- inst/doc/guide.html | 95 ++++++++++++++++++++++---------------------- inst/doc/local_ld.html | 49 +++++++++++----------- man/ieugwasr-package.Rd | 5 +- man/ld_clump.Rd | 2 man/ld_clump_api.Rd | 8 +-- tests/testthat/test_fix_n.r |only tests/testthat/test_query.r | 10 +++- vignettes/guide.Rmd | 12 ++--- 21 files changed, 219 insertions(+), 173 deletions(-)
Title: Bias Reduction in Generalized Linear Models
Description: Estimation and inference from generalized linear models based on various methods for bias reduction and maximum penalized likelihood with powers of the Jeffreys prior as penalty. The 'brglmFit()' fitting method can achieve reduction of estimation bias by solving either the mean bias-reducing adjusted score equations in Firth (1993) <doi:10.1093/biomet/80.1.27> and Kosmidis and Firth (2009) <doi:10.1093/biomet/asp055>, or the median bias-reducing adjusted score equations in Kenne et al. (2017) <doi:10.1093/biomet/asx046>, or through the direct subtraction of an estimate of the bias of the maximum likelihood estimator from the maximum likelihood estimates as in Cordeiro and McCullagh (1991) <https://www.jstor.org/stable/2345592>. See Kosmidis et al (2020) <doi:10.1007/s11222-019-09860-6> for more details. Estimation in all cases takes place via a quasi Fisher scoring algorithm, and S3 methods for the construction of of confidence intervals for the reduced-bi [...truncated...]
Author: Ioannis Kosmidis [aut, cre] ,
Euloge Clovis Kenne Pagui [aut] ,
Federico Boiocchi [ctb],
Philipp Sterzinger [ctb] ,
Kjell Konis [ctb],
Nicola Sartori [ctb]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between brglm2 versions 1.1.0 dated 2026-04-29 and 1.1.1 dated 2026-10-07
brglm2-1.1.0/brglm2/inst/simulation |only brglm2-1.1.1/brglm2/DESCRIPTION | 8 +++--- brglm2-1.1.1/brglm2/MD5 | 29 ++++++++++++------------- brglm2-1.1.1/brglm2/NAMESPACE | 1 brglm2-1.1.1/brglm2/NEWS.md | 20 ++++++++++++++--- brglm2-1.1.1/brglm2/R/bracl.R | 2 - brglm2-1.1.1/brglm2/R/brglmFit.R | 2 - brglm2-1.1.1/brglm2/R/brnb.R | 2 - brglm2-1.1.1/brglm2/R/mdyplFit.R | 6 ++++- brglm2-1.1.1/brglm2/R/summary-mdyplFit.R | 2 - brglm2-1.1.1/brglm2/build/partial.rdb |binary brglm2-1.1.1/brglm2/build/vignette.rds |binary brglm2-1.1.1/brglm2/inst/tinytest/test-bracl.R | 10 ++++++++ brglm2-1.1.1/brglm2/man/brglmFit.Rd | 2 - brglm2-1.1.1/brglm2/man/mdyplControl.Rd | 11 ++++++--- brglm2-1.1.1/brglm2/man/mdyplFit.Rd | 4 +-- 16 files changed, 65 insertions(+), 34 deletions(-)
Title: Coarse-to-Fine Spatial and Spatio-Temporal Modeling
Description: Provides functions for coarse-to-fine spatial and spatio-temporal modeling, enabling fast prediction, regression, and uncertainty quantification for moderate to large datasets. For methodological details, see Murakami et al. (2026) <doi:10.1111/gean.70034> and related work on generalized linear, downscaling, and dynamic spatio-temporal extensions.
Author: Daisuke Murakami [aut, cre],
Alexis Comber [aut],
Takahiro Yoshida [aut],
Narumasa Tsutsumida [aut],
Chris Brunsdon [aut],
Tomoki Nakaya [aut],
Jose Luis Blanco-Claraco [ctb, cph] ),
Marius Muja [cph] ,
David G. Lowe [cph]
Maintainer: Daisuke Murakami <dmuraka@ism.ac.jp>
Diff between spCF versions 0.2.2 dated 2026-10-05 and 0.2.2.1 dated 2026-10-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 8 ++++++++ tests/testthat/test-predict.R | 31 +++++++++++++++++++------------ 4 files changed, 33 insertions(+), 18 deletions(-)
Title: Standardized Economic Reporting and Automated Dynamic Writing /
Synthèse d'Écrits Avec des Règles Automatisées et Dynamiques
Description: Provides tools for generating dynamic and standardized
economic narratives in R Markdown documents. The package is primarily
designed for French-language statistical and economic publications.
It includes functions to describe changes in levels, percentages,
trends, accelerations and short-term economic developments using
consistent linguistic rules. The package supports automated reporting
workflows and reproducible economic writing.
Fournit des outils permettant de générer des textes économiques
dynamiques et standardisés dans des documents R Markdown. Le package
est principalement conçu pour les publications statistiques et
économiques en français. Il propose des fonctions permettant de
décrire les évolutions de niveaux, de pourcentages, de tendances,
d'accélérations et les évolutions conjoncturelles à l'aide de règles
linguistiques homogènes. Le package facilite l'automatisation de la
rédaction et la reproductibilité des publications économiques.
Author: Alexandre Cazenave-Lacroutz [aut] ,
Jules Lejas [cre],
Direction de l'animation de la recherche, des etudes et des
statistiques [cph]
Maintainer: Jules Lejas <jules.lejas@gmail.com>
Diff between serad versions 0.2.5 dated 2026-09-30 and 0.2.6 dated 2026-10-07
DESCRIPTION | 6 ++-- MD5 | 12 +++++--- R/init_serad_doc.R | 71 +++++++++++++++++++++++++++++------------------------ R/init_serad_en.R | 2 - R/init_serad_fr.R | 2 - inst/modeles |only man/init_serad.Rd | 69 +++++++++++++++++++++++++++++---------------------- 7 files changed, 89 insertions(+), 73 deletions(-)
Title: Analyze, Process, Identify, and Share Raman and (FT)IR Spectra
Description: Raman and (FT)IR spectral analysis tool for plastic particles and
other environmental samples (Cowger et al. 2025,
<doi:10.1021/acs.analchem.5c00962>). With read_any(), Open Specy provides a
single function for reading individual, batch, or map spectral data files
like .asp, .csv, .jdx, .spc, .spa, .0, and .zip. process_spec() simplifies
processing spectra, including smoothing, baseline correction,
range restriction and flattening, intensity conversions, wavenumber
alignment, and min-max normalization. Spectra can be identified in batch
using an onboard reference library using match_spec(). A bundled Shiny app
is available via run_app() or online at
<https://www.openanalysis.org/OpenSpecyV2/>.
Author: Win Cowger [cre, aut, dtc] ,
Zacharias Steinmetz [aut] ,
Hazel Vaquero [aut] ,
Nick Leong [aut] ,
Andrea Faltynkova [aut, dtc] ,
Hannah Sherrod [aut] ,
Andrew B Gray [ctb] ,
Hannah Hapich [ctb] ,
Jennifer Lynch [ctb, dtc] ,
Hannah De Frond [ctb, dtc] [...truncated...]
Maintainer: Win Cowger <wincowger@gmail.com>
Diff between OpenSpecy versions 2.0.1 dated 2026-10-05 and 2.0.3 dated 2026-10-07
DESCRIPTION | 8 MD5 | 36 - NEWS.md | 15 R/Specs.R | 5 R/automate_particle_analysis.R | 6 R/make_rel.R | 25 - R/match_spec.R | 25 - R/temperature_emissivity.R | 10 inst/doc/library-builder.html | 38 - inst/doc/sop.html | 448 +++++++++--------- man/Specs.Rd | 7 man/calculate_emissivity.Rd | 7 man/estimate_temperature.Rd | 7 man/make_rel.Rd | 3 tests/testthat/test-build_lib.R | 9 tests/testthat/test-hyperspectral_matrix_processing.R | 6 tests/testthat/test-make_rel.R | 12 tests/testthat/test-read_opus.R | 14 tests/testthat/test-shinylive_wasm.R | 34 + 19 files changed, 414 insertions(+), 301 deletions(-)
Title: Multivariate Generalized Linear Mixed Models for Ranking Sports
Teams
Description: Maximum likelihood estimates are obtained via an EM algorithm with either a first-order or a fully exponential Laplace approximation as documented by Broatch and Karl (2018) <doi:10.48550/arXiv.1710.05284>,
Karl, Yang, and Lohr (2014) <doi:10.1016/j.csda.2013.11.019>, and by
Karl (2012) <doi:10.1515/1559-0410.1471>. Karl and Zimmerman <doi:10.1016/j.jspi.2020.06.004> use this package to illustrate how the home field effect estimator from a mixed model can be biased under nonrandom scheduling.
Author: Andrew T. Karl [cre, aut] ,
Jennifer Broatch [aut]
Maintainer: Andrew T. Karl <akarl@asu.edu>
Diff between mvglmmRank versions 1.2-6 dated 2026-09-18 and 1.2-7 dated 2026-10-07
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS | 4 ++++ NEWS.md | 4 ++++ inst/CITATION | 2 +- tests/testthat/probit-reference.csv |only tests/testthat/test-numerics.R | 22 ++++++++++++++++++++-- 7 files changed, 39 insertions(+), 12 deletions(-)
Title: Classifications for Statistics Norway
Description: Functions to search, retrieve, apply and update classification
standards and code lists using Statistics Norway's API
<https://dataportal.ssb.no/classifications?types=Classifications> from the system 'Klass'. Retrieves classifications
by date with options to choose language, hierarchical level and formatting.
Author: Susie Jentoft [aut],
Diana-Cristina Iancu [aut],
Lisa Li [aut],
Oeyvind I. Berntsen [aut, cre],
Statistics Norway [cph]
Maintainer: Oeyvind I. Berntsen <Oyvind.Berntsen@ssb.no>
Diff between klassR versions 1.0.7 dated 2026-08-21 and 1.0.8 dated 2026-10-07
klassR-1.0.7/klassR/man/stop_quietly.Rd |only klassR-1.0.8/klassR/DESCRIPTION | 12 - klassR-1.0.8/klassR/MD5 | 20 +- klassR-1.0.8/klassR/NEWS.md | 9 + klassR-1.0.8/klassR/R/Hent_data.R | 71 ++++------ klassR-1.0.8/klassR/R/Klass_list.R | 110 ++++++++++++---- klassR-1.0.8/klassR/R/Levels.R | 24 ++- klassR-1.0.8/klassR/man/Levels.Rd | 2 klassR-1.0.8/klassR/tests/testthat/_snaps/GetKlass.md | 22 ++- klassR-1.0.8/klassR/tests/testthat/helper-api.R |only klassR-1.0.8/klassR/tests/testthat/test_ApplyKlass.R | 40 ++--- klassR-1.0.8/klassR/tests/testthat/test_GetKlass.R | 123 ++++++++++++------ 12 files changed, 279 insertions(+), 154 deletions(-)
Title: Fitting Bayesian and MLE Football Models
Description: This is the first package allowing for the estimation,
visualization and prediction of the most well-known
football models: double Poisson, bivariate Poisson, Dixon-Coles,
negative binomial, Skellam, student_t, diagonal-inflated bivariate
Poisson, and zero-inflated Skellam. It supports both maximum likelihood
estimation (MLE, for 'static' models only) and Bayesian inference.
Team abilities can be static or dynamic over weeks or seasons, with
alternative specifications of the evolution variance: a common variance
(Owen, 2011), variance inflation after the summer break
(Koopman and Lit, 2015) <doi:10.1111/rssa.12042>, and weighted dynamic
models with commensurate priors
(Macrì-Demartino, Egidi and Torelli, 2026) <doi:10.1093/jrsssc/qlag032>.
Historical team strengths can be estimated through a Bayesian
Bradley-Terry-Davidson model and used as a covariate.
For Bayesian methods, it incorporates several techniques:
MCMC sampling with Hamiltonian Monte Carlo, variational inferenc [...truncated...]
Author: Leonardo Egidi [aut, cre],
Roberto Macrì Demartino [aut],
Vasilis Palaskas [aut]
Maintainer: Leonardo Egidi <legidi@units.it>
Diff between footBayes versions 2.0.0 dated 2025-05-16 and 2.1.0 dated 2026-10-07
footBayes-2.0.0/footBayes/vignettes/abilities-1.png |only footBayes-2.0.0/footBayes/vignettes/abilities-2.png |only footBayes-2.0.0/footBayes/vignettes/abilities_dyn-1.png |only footBayes-2.0.0/footBayes/vignettes/foot_prob_weekly_predict-1.png |only footBayes-2.0.0/footBayes/vignettes/foot_roundrobin-1.png |only footBayes-2.0.0/footBayes/vignettes/plot_btdPosterior_stat-1.png |only footBayes-2.0.0/footBayes/vignettes/plot_btdPosterior_teams_dyn-1.png |only footBayes-2.0.0/footBayes/vignettes/plot_btdPosterior_teams_dyn_dens-1.png |only footBayes-2.0.0/footBayes/vignettes/plot_btdPosterior_teams_stat-1.png |only footBayes-2.0.0/footBayes/vignettes/plot_btdPosterior_teams_stat_dens-1.png |only footBayes-2.0.0/footBayes/vignettes/plot_logStrength_teams_dyn-1.png |only footBayes-2.0.0/footBayes/vignettes/rank_pred1-1.png |only footBayes-2.0.0/footBayes/vignettes/rank_pred1-2.png |only footBayes-2.0.0/footBayes/vignettes/rank_pred2-1.png |only footBayes-2.0.0/footBayes/vignettes/rank_pred2-2.png |only footBayes-2.0.0/footBayes/vignettes/rank_pred2-3.png |only footBayes-2.0.0/footBayes/vignettes/static_fit_corr-1.png |only footBayes-2.1.0/footBayes/DESCRIPTION | 34 footBayes-2.1.0/footBayes/MD5 | 195 footBayes-2.1.0/footBayes/NAMESPACE | 212 footBayes-2.1.0/footBayes/NEWS.md | 98 footBayes-2.1.0/footBayes/R/btd_foot.R | 1268 +- footBayes-2.1.0/footBayes/R/compare_foot.R | 681 - footBayes-2.1.0/footBayes/R/england.R | 42 footBayes-2.1.0/footBayes/R/foot_abilities.R | 1542 +-- footBayes-2.1.0/footBayes/R/foot_priors.R | 324 footBayes-2.1.0/footBayes/R/foot_prob.R | 1030 +- footBayes-2.1.0/footBayes/R/foot_rank.R | 1464 +- footBayes-2.1.0/footBayes/R/foot_round_robin.R | 590 - footBayes-2.1.0/footBayes/R/globals.R | 34 footBayes-2.1.0/footBayes/R/italy.R | 34 footBayes-2.1.0/footBayes/R/mle_foot.R | 1009 -- footBayes-2.1.0/footBayes/R/plot_btdPosterior.R | 688 - footBayes-2.1.0/footBayes/R/plot_logStrength.R | 266 footBayes-2.1.0/footBayes/R/pp_foot.R | 565 - footBayes-2.1.0/footBayes/R/print_fun_foot.R | 735 - footBayes-2.1.0/footBayes/R/stan_foot.R | 2384 ++-- footBayes-2.1.0/footBayes/R/startup.R | 12 footBayes-2.1.0/footBayes/R/utils_foot.R | 743 + footBayes-2.1.0/footBayes/README.md | 238 footBayes-2.1.0/footBayes/build/vignette.rds |binary footBayes-2.1.0/footBayes/inst/doc/footBayes_a_rapid_guide.R | 445 footBayes-2.1.0/footBayes/inst/doc/footBayes_a_rapid_guide.Rmd | 3189 ++---- footBayes-2.1.0/footBayes/inst/doc/footBayes_a_rapid_guide.html | 4939 ++++------ footBayes-2.1.0/footBayes/man/btd_foot.Rd | 290 footBayes-2.1.0/footBayes/man/compare_foot.Rd | 266 footBayes-2.1.0/footBayes/man/england.Rd | 62 footBayes-2.1.0/footBayes/man/foot_abilities.Rd | 212 footBayes-2.1.0/footBayes/man/foot_prob.Rd | 163 footBayes-2.1.0/footBayes/man/foot_rank.Rd | 128 footBayes-2.1.0/footBayes/man/foot_round_robin.Rd | 126 footBayes-2.1.0/footBayes/man/italy.Rd | 54 footBayes-2.1.0/footBayes/man/mle_foot.Rd | 267 footBayes-2.1.0/footBayes/man/plot_btdPosterior.Rd | 224 footBayes-2.1.0/footBayes/man/plot_logStrength.Rd | 148 footBayes-2.1.0/footBayes/man/pp_foot.Rd | 155 footBayes-2.1.0/footBayes/man/print.btdFoot.Rd | 74 footBayes-2.1.0/footBayes/man/print.compareFoot.Rd | 42 footBayes-2.1.0/footBayes/man/print.stanFoot.Rd | 54 footBayes-2.1.0/footBayes/man/priors.Rd | 212 footBayes-2.1.0/footBayes/man/stan_foot.Rd | 716 - footBayes-2.1.0/footBayes/src/install.libs.R | 66 footBayes-2.1.0/footBayes/src/stan/biv_pois.stan | 318 footBayes-2.1.0/footBayes/src/stan/biv_pois_dynamic.stan | 626 - footBayes-2.1.0/footBayes/src/stan/com_pois_dynamic.stan |only footBayes-2.1.0/footBayes/src/stan/diag_infl_biv_pois.stan | 397 footBayes-2.1.0/footBayes/src/stan/diag_infl_biv_pois_dynamic.stan | 688 - footBayes-2.1.0/footBayes/src/stan/dixon_coles.stan |only footBayes-2.1.0/footBayes/src/stan/dixon_coles_dynamic.stan |only footBayes-2.1.0/footBayes/src/stan/double_pois.stan | 264 footBayes-2.1.0/footBayes/src/stan/double_pois_dynamic.stan | 547 - footBayes-2.1.0/footBayes/src/stan/dynamic_btd.stan | 215 footBayes-2.1.0/footBayes/src/stan/neg_bin.stan | 284 footBayes-2.1.0/footBayes/src/stan/neg_bin_dynamic.stan | 548 - footBayes-2.1.0/footBayes/src/stan/skellam.stan | 284 footBayes-2.1.0/footBayes/src/stan/skellam_dynamic.stan | 560 - footBayes-2.1.0/footBayes/src/stan/static_btd.stan | 189 footBayes-2.1.0/footBayes/src/stan/student_t.stan | 250 footBayes-2.1.0/footBayes/src/stan/student_t_dynamic.stan | 261 footBayes-2.1.0/footBayes/src/stan/zero_infl_skellam.stan | 336 footBayes-2.1.0/footBayes/src/stan/zero_infl_skellam_dynamic.stan | 608 - footBayes-2.1.0/footBayes/tests/testthat.R | 30 footBayes-2.1.0/footBayes/tests/testthat/BundesLiga07-08.csv | 614 - footBayes-2.1.0/footBayes/tests/testthat/test_btd_foot.R | 922 - footBayes-2.1.0/footBayes/tests/testthat/test_compare_foot.R | 474 footBayes-2.1.0/footBayes/tests/testthat/test_foot_abilities.R | 642 - footBayes-2.1.0/footBayes/tests/testthat/test_foot_prob.R | 630 - footBayes-2.1.0/footBayes/tests/testthat/test_foot_rank.R | 1582 +-- footBayes-2.1.0/footBayes/tests/testthat/test_foot_round_robin.R | 772 - footBayes-2.1.0/footBayes/tests/testthat/test_mle_foot.R | 530 - footBayes-2.1.0/footBayes/tests/testthat/test_plot_btdPosterior.R | 1000 +- footBayes-2.1.0/footBayes/tests/testthat/test_plot_logStrength.R | 280 footBayes-2.1.0/footBayes/tests/testthat/test_pp_foot.R | 415 footBayes-2.1.0/footBayes/tests/testthat/test_print_fun_foot.R | 1143 +- footBayes-2.1.0/footBayes/tests/testthat/test_stan_foot.R | 2087 ++-- footBayes-2.1.0/footBayes/tests/testthat/test_utils_foot.R |only footBayes-2.1.0/footBayes/vignettes/comparing_priors-1.png |binary footBayes-2.1.0/footBayes/vignettes/footBayes_a_rapid_guide.Rmd | 3189 ++---- footBayes-2.1.0/footBayes/vignettes/footBayes_a_rapid_guide.Rmd.orig | 2263 +--- footBayes-2.1.0/footBayes/vignettes/foot_prob-1.png |only footBayes-2.1.0/footBayes/vignettes/foot_round_robin-1.png |only footBayes-2.1.0/footBayes/vignettes/plot_btdPosterior_dyn-1.png |binary footBayes-2.1.0/footBayes/vignettes/plot_btdPosterior_stat_dens-1.png |only footBayes-2.1.0/footBayes/vignettes/plot_logStrength-1.png |only footBayes-2.1.0/footBayes/vignettes/pp_checks-1.png |binary footBayes-2.1.0/footBayes/vignettes/pp_foot-1.png |binary footBayes-2.1.0/footBayes/vignettes/pp_foot-2.png |binary footBayes-2.1.0/footBayes/vignettes/rank_insample-1.png |only footBayes-2.1.0/footBayes/vignettes/rank_outsample-1.png |only footBayes-2.1.0/footBayes/vignettes/rank_outsample-2.png |only footBayes-2.1.0/footBayes/vignettes/seasonal_abilities-1.png |only footBayes-2.1.0/footBayes/vignettes/static_fit_areas-1.png |only footBayes-2.1.0/footBayes/vignettes/thesis.bib | 2611 ++--- footBayes-2.1.0/footBayes/vignettes/weekly_abilities-1.png |only 114 files changed, 25839 insertions(+), 25740 deletions(-)
Title: Confidence Intervals and Tests for Comparisons of Binomial
Proportions or Poisson Rates
Description: Computes confidence intervals for binomial or Poisson rates
and their differences or ratios. Including the rate (or risk)
difference ('RD') or rate ratio (or relative risk, 'RR') for binomial
proportions or Poisson rates, and odds ratio ('OR', binomial only).
Also confidence intervals for RD, RR or OR for paired binomial data,
and estimation of a proportion from clustered binomial data. Includes
skewness-corrected asymptotic score ('SCAS') methods, which have been
developed in Laud (2017) <doi:10.1002/pst.1813> from Miettinen and
Nurminen (1985) <doi:10.1002/sim.4780040211> and Gart and Nam (1988)
<doi:10.2307/2531848>, and in Laud (2026, under review) for paired
proportions. In each case, the same score produces hypothesis tests that are
improved versions of the non-inferiority test for binomial RD and RR
by Farrington and Manning (1990) <doi:10.1002/sim.4780091208>, or a
generalisation of the McNemar test for paired data. The package also
includes MOVER metho [...truncated...]
Author: Pete Laud [aut, cre]
Maintainer: Pete Laud <pete@sheffstat.co.uk>
Diff between ratesci versions 1.1.0 dated 2026-07-02 and 1.1.1 dated 2026-10-07
DESCRIPTION | 8 MD5 | 137 - NAMESPACE | 84 NEWS.md | 491 ++--- R/clusterpci.R | 198 +- R/data.R | 100 - R/moverci.R | 904 ++++----- R/moverpairci.R | 726 +++---- R/orci.R | 518 ++--- R/orpairci.R | 337 +-- R/pairbinci.R | 2379 ++++++++++++------------- R/rateci.R | 1094 +++++------ R/ratesci-package.R | 192 +- R/rdci.R | 583 +++--- R/rdpairci.R | 513 +++-- R/rrci.R | 538 ++--- R/rrpairci.R | 464 ++--- R/scoreci.R | 3758 ++++++++++++++++++++--------------------- R/scorepairci.R | 1596 ++++++++--------- R/utils.R | 795 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/basic_contrasts.R | 254 +- inst/doc/basic_contrasts.Rmd | 490 ++--- inst/doc/basic_contrasts.html | 1617 ++++++++--------- inst/doc/paired_contrasts.R | 116 - inst/doc/paired_contrasts.Rmd | 262 +- inst/doc/paired_contrasts.html | 1265 ++++++------- inst/doc/single_rate.R | 210 +- inst/doc/single_rate.Rmd | 390 ++-- inst/doc/single_rate.html | 1400 +++++++-------- inst/doc/stratified.R | 108 - inst/doc/stratified.Rmd | 190 +- inst/doc/stratified.html | 1056 +++++------ inst/doc/tests.R | 234 +- inst/doc/tests.Rmd | 414 ++-- inst/doc/tests.html | 1458 +++++++-------- man/cisapride.Rd | 54 man/clusterpci.Rd | 150 - man/compress.Rd | 56 man/crash.Rd | 58 man/jeffreysci.Rd | 150 - man/moverbci.Rd | 146 - man/moverci.Rd | 244 +- man/orci.Rd | 170 - man/orpairci.Rd | 4 man/pairbinci.Rd | 458 ++-- man/rateci.Rd | 262 +- man/ratesci-package.Rd | 247 +- man/rdci.Rd | 217 +- man/rdpairci.Rd | 2 man/rrci.Rd | 200 +- man/rrpairci.Rd | 1 man/scasci.Rd | 336 +-- man/scaspci.Rd | 138 - man/scoreci.Rd | 718 +++---- man/tdasci.Rd | 346 +-- tests/testthat.R | 24 tests/testthat/test1.R | 760 ++++---- tests/testthat/test2.R | 398 ++-- tests/testthat/test3.R | 1460 ++++++++------- tests/testthat/test4.R | 920 +++++----- tests/testthat/test5.R | 72 tests/testthat/test6.R |only vignettes/REFERENCES.bib | 808 ++++---- vignettes/basic_contrasts.Rmd | 490 ++--- vignettes/paired_contrasts.Rmd | 262 +- vignettes/single_rate.Rmd | 390 ++-- vignettes/stratified.Rmd | 190 +- vignettes/tests.Rmd | 414 ++-- 70 files changed, 17617 insertions(+), 17407 deletions(-)
Title: GC/LC-MS Data Analysis for Environmental Science
Description: Gas/Liquid Chromatography-Mass Spectrometer(GC/LC-MS) Data Analysis for Environmental Science. This package covered topics such molecular isotope ratio, matrix effects and Short-Chain Chlorinated Paraffins analysis etc. in environmental analysis.
Author: Miao YU [aut, cre] ,
Thanh Wang [ctb]
Maintainer: Miao YU <yufreecas@gmail.com>
Diff between enviGCMS versions 0.8.0 dated 2025-01-14 and 0.9.0 dated 2026-10-07
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Title: Comprehensive Single-Cell Annotation and Transcriptomic Analysis
Toolkit
Description: Provides a comprehensive toolkit for single-cell annotation with the 'CellMarker 3.0' database <https://bio-bigdata.hrbmu.edu.cn/CellMarker/>. Streamlines biological label assignment in single-cell RNA-seq data and facilitates transcriptomic analysis, including preparation of TCGA<https://portal.gdc.cancer.gov/> and GEO<https://www.ncbi.nlm.nih.gov/geo/> datasets, differential expression analysis and visualization of enrichment analysis results. Additional utility functions support various bioinformatics workflows. See Wei Cui (2024) <doi: 10.1101/2024.09.14.609619> for more details.
Author: Wei Cui [aut, cre, cph]
Maintainer: Wei Cui <m2c.w@outlook.com>
Diff between easybio versions 1.2.3 dated 2025-10-02 and 1.3.0 dated 2026-10-07
easybio-1.2.3/easybio/inst/extdata |only easybio-1.2.3/easybio/man/figures |only easybio-1.2.3/easybio/vignettes/example-bulk-rna-seq-workflow.html |only easybio-1.2.3/easybio/vignettes/example-single-cell-annotation.html |only easybio-1.3.0/easybio/DESCRIPTION | 13 easybio-1.3.0/easybio/MD5 | 165 +- easybio-1.3.0/easybio/NAMESPACE | 52 easybio-1.3.0/easybio/NEWS.md | 20 easybio-1.3.0/easybio/R/Artist.R | 212 +-- easybio-1.3.0/easybio/R/easybio-package.R | 54 easybio-1.3.0/easybio/R/gg-theme.R | 13 easybio-1.3.0/easybio/R/limma.R | 196 ++- easybio-1.3.0/easybio/R/ora.R | 127 + easybio-1.3.0/easybio/R/prepare.R | 216 ++- easybio-1.3.0/easybio/R/sc.R | 644 +++++++--- easybio-1.3.0/easybio/R/sysdata.rda |binary easybio-1.3.0/easybio/R/uniprot.R | 99 - easybio-1.3.0/easybio/R/utils.R | 193 ++ easybio-1.3.0/easybio/README.md | 30 easybio-1.3.0/easybio/build/vignette.rds |binary easybio-1.3.0/easybio/inst/CITATION | 40 easybio-1.3.0/easybio/inst/doc/example-artist.R |only easybio-1.3.0/easybio/inst/doc/example-artist.Rmd |only easybio-1.3.0/easybio/inst/doc/example-artist.html |only easybio-1.3.0/easybio/inst/doc/example-sc-seq-workflow.R | 29 easybio-1.3.0/easybio/inst/doc/example-sc-seq-workflow.Rmd | 451 +++---- easybio-1.3.0/easybio/inst/doc/example-sc-seq-workflow.html | 309 ++-- easybio-1.3.0/easybio/inst/doc/example_limma.R | 18 easybio-1.3.0/easybio/inst/doc/example_limma.Rmd | 316 ++-- easybio-1.3.0/easybio/inst/doc/example_limma.html | 56 easybio-1.3.0/easybio/inst/example-bulk-rna-seq.R | 12 easybio-1.3.0/easybio/inst/example-single-cell.R | 131 +- easybio-1.3.0/easybio/man/Artist.Rd | 191 +- easybio-1.3.0/easybio/man/available_tissue_class.Rd | 2 easybio-1.3.0/easybio/man/available_tissue_type.Rd | 21 easybio-1.3.0/easybio/man/check_marker.Rd | 26 easybio-1.3.0/easybio/man/dgeList.Rd | 24 easybio-1.3.0/easybio/man/dge_list.Rd |only easybio-1.3.0/easybio/man/dprocess_dgeList.Rd | 23 easybio-1.3.0/easybio/man/easybio-package.Rd | 2 easybio-1.3.0/easybio/man/get_marker.Rd | 24 easybio-1.3.0/easybio/man/groupStat.Rd | 25 easybio-1.3.0/easybio/man/groupStatI.Rd | 23 easybio-1.3.0/easybio/man/group_stat.Rd |only easybio-1.3.0/easybio/man/group_stat_i.Rd |only easybio-1.3.0/easybio/man/limmaFit.Rd | 19 easybio-1.3.0/easybio/man/limma_fit.Rd |only easybio-1.3.0/easybio/man/matchCellMarker2.Rd | 111 - easybio-1.3.0/easybio/man/match_ref.Rd |only easybio-1.3.0/easybio/man/plotEnrichment2.Rd | 23 easybio-1.3.0/easybio/man/plotGSEA.Rd | 22 easybio-1.3.0/easybio/man/plotMarkerDistribution.Rd | 19 easybio-1.3.0/easybio/man/plotORA.Rd | 25 easybio-1.3.0/easybio/man/plotPossibleCell.Rd | 16 easybio-1.3.0/easybio/man/plotRank.Rd | 15 easybio-1.3.0/easybio/man/plotSeuratDot.Rd | 59 easybio-1.3.0/easybio/man/plotVolcano.Rd | 25 easybio-1.3.0/easybio/man/plot_enrichment.Rd |only easybio-1.3.0/easybio/man/plot_gsea.Rd |only easybio-1.3.0/easybio/man/plot_marker_distribution.Rd |only easybio-1.3.0/easybio/man/plot_ora.Rd |only easybio-1.3.0/easybio/man/plot_possible_cell.Rd |only easybio-1.3.0/easybio/man/plot_rank.Rd |only easybio-1.3.0/easybio/man/plot_seurat_dot.Rd |only easybio-1.3.0/easybio/man/plot_volcano.Rd |only easybio-1.3.0/easybio/man/prepare_geo.Rd | 26 easybio-1.3.0/easybio/man/prepare_tcga.Rd | 17 easybio-1.3.0/easybio/man/process_dge_list.Rd |only easybio-1.3.0/easybio/man/setSavedir.Rd | 13 easybio-1.3.0/easybio/man/set_colnames.Rd |only easybio-1.3.0/easybio/man/set_rownames.Rd |only easybio-1.3.0/easybio/man/set_savedir.Rd |only easybio-1.3.0/easybio/man/setcolnames.Rd | 16 easybio-1.3.0/easybio/man/setrownames.Rd | 16 easybio-1.3.0/easybio/man/suggest_best_match.Rd | 25 easybio-1.3.0/easybio/man/theme_publication.Rd | 9 easybio-1.3.0/easybio/man/tuneParameters.Rd | 19 easybio-1.3.0/easybio/man/tune_parameters.Rd |only easybio-1.3.0/easybio/man/uniprot_id_map.Rd | 11 easybio-1.3.0/easybio/man/workIn.Rd | 19 easybio-1.3.0/easybio/man/work_in.Rd |only easybio-1.3.0/easybio/tests/testthat/test-available_tissue.R |only easybio-1.3.0/easybio/tests/testthat/test-check_marker.R |only easybio-1.3.0/easybio/tests/testthat/test-deprecated.R |only easybio-1.3.0/easybio/tests/testthat/test-finsert.R | 105 + easybio-1.3.0/easybio/tests/testthat/test-get_marker.R |only easybio-1.3.0/easybio/tests/testthat/test-limma_fit.R |only easybio-1.3.0/easybio/tests/testthat/test-list2dt.R |only easybio-1.3.0/easybio/tests/testthat/test-list2graph.R |only easybio-1.3.0/easybio/tests/testthat/test-match_ref.R |only easybio-1.3.0/easybio/tests/testthat/test-plot_possible_cell.R |only easybio-1.3.0/easybio/tests/testthat/test-plot_seurat_dot.R |only easybio-1.3.0/easybio/tests/testthat/test-plot_volcano.R |only easybio-1.3.0/easybio/tests/testthat/test-prepare_tcga.R |only easybio-1.3.0/easybio/tests/testthat/test-process_dge_list.R |only easybio-1.3.0/easybio/tests/testthat/test-suggest_best_match.R |only easybio-1.3.0/easybio/tests/testthat/test-uniprot_id_map.R |only easybio-1.3.0/easybio/vignettes/example-artist.Rmd |only easybio-1.3.0/easybio/vignettes/example-sc-seq-workflow.Rmd | 451 +++---- easybio-1.3.0/easybio/vignettes/example_limma.Rmd | 316 ++-- 100 files changed, 3071 insertions(+), 2063 deletions(-)
Title: Read and Modify STICS Input/Output Files
Description: Manipulating input and output files of the 'STICS' crop model
(Beaudouin et al. (2022) <doi:10.35690/978-2-7592-3679-4>). The
package is based on the model software, which is accessible, as well
as resources, on its web site <https://stics.inrae.fr/eng/>. Files
are either 'JavaSTICS' XML files or text files used by the model
'fortran' executable. Most basic functionalities are reading or
writing parameter names and values in both XML or text input files,
and getting data from output files. Advanced functionalities include
XML files generation from XML templates and/or spreadsheets, or text
files generation from XML files by using 'xslt' transformation.
Author: Patrice Lecharpentier [aut, cre] ,
Remi Vezy [aut] ,
Samuel Buis [aut] ,
Michel Giner [aut] ,
Timothee Flutre [aut] ,
Valentine Rahier [aut],
Thomas Robine [ctb],
Amine Barkaoui [ctb],
Patrick Chabrier [ctb],
Julie Constantin [rev],
Dominique Ripoche [...truncated...]
Maintainer: Patrice Lecharpentier <patrice.lecharpentier@inrae.fr>
Diff between SticsRFiles versions 1.7.0 dated 2026-09-14 and 1.7.2 dated 2026-10-07
DESCRIPTION | 13 +- MD5 | 52 +++++------ NAMESPACE | 17 ++- NEWS.md | 26 +++++ R/convert_xml2txt.R | 85 +++++++++++++++++- R/convert_xml2txt_int.R | 12 ++ R/download_data.R | 113 ++++++++++++++++++------ R/gen_new_travail.R | 33 +++++-- R/gen_tec_doc.R | 106 +++++++++++++--------- R/gen_tec_xml.R | 76 ++++------------ R/gen_usms_xml2txt.R | 31 ++++-- R/get_plant_name.R | 2 R/rewrite_xml_files.R | 24 +++-- R/stics_files_utils.R | 130 ++++++++++++++++++++++++++++ README.md | 55 ++++++----- inst/WORDLIST | 1 inst/doc/Generating_Stics_XML_files.html | 10 +- inst/doc/Manipulating_Stics_XML_files.html | 2 inst/doc/Manipulating_Stics_text_files.html | 2 inst/doc/SticsRFiles.R | 108 +++++++++++++++-------- inst/doc/SticsRFiles.Rmd | 77 ++++++++++++---- inst/doc/SticsRFiles.html | 91 +++++++++---------- inst/extdata/xml.zip |binary man/gen_tec_xml.Rd | 6 - man/get_plant_files.Rd | 2 tests/testthat/test-download-data.R |only tests/testthat/test-stics_files_utils.R |only vignettes/SticsRFiles.Rmd | 77 ++++++++++++---- 28 files changed, 800 insertions(+), 351 deletions(-)
Title: Single-Species, Multi-Species, and Integrated Spatial Occupancy
Models
Description: Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2022) <doi:10.18637/jss.v103.i05>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2 [...truncated...]
Author: Jeffrey Doser [aut, cre],
Andrew Finley [aut],
Marc Kery [ctb]
Maintainer: Jeffrey Doser <jwdoser@ncsu.edu>
Diff between spOccupancy versions 0.8.1 dated 2026-08-21 and 0.8.2 dated 2026-10-07
DESCRIPTION | 6 - MD5 | 32 ++++---- NAMESPACE | 7 + NEWS.md | 8 ++ R/generics.R | 170 +++++++++++++++++++++++++---------------------- R/plot-generics.R | 2 R/postHocLM.R | 2 R/ppcOcc.R | 8 +- R/simFPOcc.R |only R/simIntMsOcc.R | 6 - R/simIntOcc.R | 6 - R/simTBinom.R | 13 ++- R/simTIntOcc.R | 8 +- R/simTMsOcc.R | 6 - R/simTOcc.R | 18 +++- R/waicOcc.R | 5 + man/simFPOcc.Rd |only src/spMsPGOccPredict.cpp | 2 18 files changed, 171 insertions(+), 128 deletions(-)
Title: Pharmacometric and Pharmacokinetic Toolkit
Description: Pharmacometric tools for common data analytical tasks; closed-form solutions for calculating concentrations at given
times after dosing based on compartmental PK models (1-compartment, 2-compartment and 3-compartment, covering infusions, zero-
and first-order absorption, and lag times, after single doses and at steady state, per Bertrand & Mentre (2008)
<https://web.archive.org/web/20231002021707/https://www.facm.ucl.ac.be/cooperation/Vietnam/WBI-Vietnam-October-2011/Modelling/Monolix32_PKPD_library.pdf>); parametric simulation from NONMEM-generated parameter estimates
and other output; and parsing, tabulating and plotting results generated by Perl-speaks-NONMEM (PsN).
Author: Justin Wilkins [aut, cre, cph] ,
Bill Denney [aut] ,
Rik Schoemaker [aut],
Satyaprakash Nayak [ctb],
Leonid Gibiansky [ctb],
Andrew Hooker [ctb],
E. Niclas Jonsson [ctb],
Mats O. Karlsson [ctb],
John Johnson [ctb]
Maintainer: Justin Wilkins <justin.wilkins@occams.com>
Diff between pmxTools versions 1.5 dated 2025-08-25 and 1.6 dated 2026-10-07
DESCRIPTION | 26 +- MD5 | 125 +++++++------ NAMESPACE | 71 +++++-- NEWS.md | 20 ++ R/calc_1cmt.R | 4 R/calc_2cmt.R | 4 R/calc_3cmt.R | 4 R/calc_derived.R | 200 +++++++++++---------- R/cut_quantile.R |only R/datamap.R |only R/dgr_table.R | 349 +++++++++++++++++++++++++++---------- R/get_auc.R | 3 R/get_probinfo.r | 7 R/pk_curve.R | 2 R/plot_nmprogress.R | 6 R/pmxTools-package.R | 4 R/read_nm.R | 6 R/read_nm_all.R | 10 - R/read_nmcov.R | 1 R/read_nmtables.R | 15 - R/read_scm.R | 4 R/rnm.R | 14 - R/statistics.R | 6 R/trans_blq.R | 8 R/zzz.R | 6 README.md | 29 +-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/pk-curves.Rmd | 2 inst/doc/pk-curves.html | 7 man/blq_trans.Rd | 128 ++++++------- man/breaks_blq_general.Rd | 90 ++++----- man/calc_sd_1cmt.Rd | 154 ++++++++-------- man/calc_sd_2cmt.Rd | 164 ++++++++--------- man/calc_sd_3cmt.Rd | 166 ++++++++--------- man/calc_ss_1cmt.Rd | 160 ++++++++-------- man/calc_ss_2cmt.Rd | 166 ++++++++--------- man/calc_ss_3cmt.Rd | 166 ++++++++--------- man/cut_quantile.Rd |only man/datamap.Rd |only man/dgr_table.Rd | 111 ++++++----- man/estimate_lloq.Rd | 62 +++--- man/ftrans_blq_linear.Rd | 86 ++++----- man/gcv_convert.Rd | 60 +++--- man/get_probinfo.Rd | 62 +++--- man/itrans_blq_linear.Rd | 78 ++++---- man/label_blq.Rd | 65 +++--- man/plot_scm.Rd | 296 +++++++++++++++---------------- man/pmxTools-package.Rd | 81 ++++---- man/read_nm.Rd | 90 ++++----- man/read_nm_all.Rd | 89 +++++---- man/read_nm_multi_table.Rd | 100 +++++----- man/read_nmcov.Rd | 96 +++++----- man/read_nmext.Rd | 140 +++++++------- man/read_nmtables.Rd | 148 +++++++-------- man/read_scm.Rd | 112 +++++------ tests/testthat/_snaps |only tests/testthat/test-calc.R | 40 ++++ tests/testthat/test-convert.R | 26 ++ tests/testthat/test-cut_quantile.R |only tests/testthat/test-dgr_table.R |only tests/testthat/test-nm.R | 31 +++ tests/testthat/test-plot.R | 5 vignettes/pk-curves.Rmd | 2 64 files changed, 2166 insertions(+), 1741 deletions(-)
More information about decisionfacets at CRAN
Permanent link
Title: Tools for Analyzing Cross-National Military Deployment and
Basing Data
Description: These functions generate data frames on troop deployments and military basing using U.S. Department of Defense data on overseas military deployments. This package provides functions for pulling country-year troop deployment and basing data. Subsequent versions will hopefully include cross-national data on deploying countries.
Author: Michael Flynn [aut, cre]
Maintainer: Michael Flynn <meflynn@ksu.edu>
Diff between troopdata versions 1.0.4 dated 2025-07-03 and 1.1.0 dated 2026-10-07
troopdata-1.0.4/troopdata/man/figures/README-pressure-1.png |only troopdata-1.0.4/troopdata/man/figures/README-unnamed-chunk-10-1.png |only troopdata-1.0.4/troopdata/man/figures/README-unnamed-chunk-7-1.png |only troopdata-1.0.4/troopdata/man/figures/README-unnamed-chunk-9-1.png |only troopdata-1.0.4/troopdata/tests/spelling.R |only troopdata-1.0.4/troopdata/tests/testthat/test-troopdata-duplicates-check.R |only troopdata-1.1.0/troopdata/DESCRIPTION | 10 troopdata-1.1.0/troopdata/MD5 | 49 troopdata-1.1.0/troopdata/NAMESPACE | 6 troopdata-1.1.0/troopdata/NEWS.md | 354 +++ troopdata-1.1.0/troopdata/R/data.R | 441 ++++ troopdata-1.1.0/troopdata/R/get_builddata.R | 498 ++++- troopdata-1.1.0/troopdata/R/get_exercises.R |only troopdata-1.1.0/troopdata/R/get_troopdata.R | 929 +++++++++- troopdata-1.1.0/troopdata/README.md | 61 troopdata-1.1.0/troopdata/build/partial.rdb |binary troopdata-1.1.0/troopdata/data/build_data_20260918.rda |only troopdata-1.1.0/troopdata/data/mme_long.rda |only troopdata-1.1.0/troopdata/data/troopdata_rebuild_long.rda |binary troopdata-1.1.0/troopdata/data/troopdata_rebuild_reports.rda |binary troopdata-1.1.0/troopdata/data/troopdata_rebuild_us_states.rda |only troopdata-1.1.0/troopdata/man/build_data_20260918.Rd |only troopdata-1.1.0/troopdata/man/builddata.Rd | 12 troopdata-1.1.0/troopdata/man/get_builddata.Rd | 237 ++ troopdata-1.1.0/troopdata/man/get_exercises.Rd |only troopdata-1.1.0/troopdata/man/get_troopdata.Rd | 223 ++ troopdata-1.1.0/troopdata/man/mme_long.Rd |only troopdata-1.1.0/troopdata/man/troopdata_rebuild_long.Rd | 130 + troopdata-1.1.0/troopdata/man/troopdata_rebuild_reports.Rd | 71 troopdata-1.1.0/troopdata/man/troopdata_rebuild_us_states.Rd |only troopdata-1.1.0/troopdata/tests/testthat/test-data-integrity.R |only troopdata-1.1.0/troopdata/tests/testthat/test-get_builddata.R |only troopdata-1.1.0/troopdata/tests/testthat/test-get_exercises.R |only troopdata-1.1.0/troopdata/tests/testthat/test-get_troopdata.R |only troopdata-1.1.0/troopdata/tests/testthat/test-package-api.R |only 35 files changed, 2768 insertions(+), 253 deletions(-)
Title: Robust PCA by Projection Pursuit
Description: Provides functions for robust PCA by projection pursuit.
The methods are described in Croux et al. (2006) <doi:10.2139/ssrn.968376>,
Croux et al. (2013) <doi:10.1080/00401706.2012.727746>,
Todorov and Filzmoser (2013) <doi:10.1007/978-3-642-33042-1_31>.
Author: Peter Filzmoser [aut],
Heinrich Fritz [aut],
Klaudius Kalcher [aut],
Valentin Todorov [cre]
Maintainer: Valentin Todorov <valentin@todorov.at>
Diff between pcaPP versions 2.0-5 dated 2024-08-19 and 2.0-7 dated 2026-10-07
ChangeLog | 10 ++++++++++ DESCRIPTION | 12 ++++++------ MD5 | 17 +++++++++-------- R/covPC.R | 23 +++++++++++++++-------- R/opt.TPO.R | 17 ++++++++++++++--- build |only inst/doc/matlab.R | 2 -- inst/doc/matlab.pdf |binary tests/tpcapp.R | 34 ++++++++++++++++++++++++++++++++++ tests/tpcapp.Rout.save | 42 ++++++++++++++++++++++++++++++++++++++---- 10 files changed, 126 insertions(+), 31 deletions(-)
Title: Discovery, Retrieval, and Analysis of Water Isotope Data
Description: The wiDB...() functions provide an interface to the public API
of the wiDB <https://github.com/SPATIAL-Lab/isoWater/blob/master/Protocol.md>:
build, check and submit queries, and receive and
unpack responses. Data analysis functions support Bayesian
inference of the source and source isotope composition of water
samples that may have experienced evaporation. Algorithms
adapted from Bowen et al. (2018, <doi:10.1007/s00442-018-4192-5>).
Author: Gabe Bowen [aut, cre]
Maintainer: Gabe Bowen <gabe.bowen@utah.edu>
Diff between isoWater versions 1.2.2 dated 2026-05-22 and 1.2.3 dated 2026-10-07
DESCRIPTION | 6 ++-- MD5 | 12 ++++---- NEWS.md | 3 ++ R/wiDBfunctions.R | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/isoWater.html | 70 ++++++++++++++++++++++++------------------------- 7 files changed, 48 insertions(+), 45 deletions(-)
Title: Wrapper Functions for 'FreeSurfer'
Description: Wrapper functions that interface with 'Freesurfer'
<https://surfer.nmr.mgh.harvard.edu/>, a powerful and commonly-used
'neuroimaging' software, using system commands. The goal is to be able
to interface with 'Freesurfer' completely in R, where you pass R
objects of class 'nifti', implemented by package 'oro.nifti', and the
function executes an 'Freesurfer' command and returns an R object of
class 'nifti' or necessary output.
Author: John Muschelli [aut, cre, cph] ,
Athanasia Mo Mowinckel [ctb]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between freesurfer versions 1.8.1 dated 2025-05-12 and 1.9.0 dated 2026-10-07
freesurfer-1.8.1/freesurfer/R/aparcstats2table.R |only freesurfer-1.8.1/freesurfer/R/asegstats2table.R |only freesurfer-1.8.1/freesurfer/R/mnc2nii.R |only freesurfer-1.8.1/freesurfer/R/mris_convert_annot.R |only freesurfer-1.8.1/freesurfer/R/mris_convert_curv.R |only freesurfer-1.8.1/freesurfer/R/mris_convert_normals.R |only freesurfer-1.8.1/freesurfer/R/mris_convert_vertex.R |only freesurfer-1.8.1/freesurfer/R/nii2mnc.R |only freesurfer-1.8.1/freesurfer/R/readmgz.R |only freesurfer-1.8.1/freesurfer/R/readmnc.R |only freesurfer-1.8.1/freesurfer/R/recon.R |only freesurfer-1.8.1/freesurfer/R/run_check_fs_cmd.R |only freesurfer-1.8.1/freesurfer/R/trac_all.R |only freesurfer-1.8.1/freesurfer/R/trac_manual.R |only freesurfer-1.8.1/freesurfer/inst/doc/exploring_included_data.R |only freesurfer-1.8.1/freesurfer/inst/doc/exploring_included_data.Rmd |only freesurfer-1.8.1/freesurfer/inst/doc/exploring_included_data.html |only freesurfer-1.8.1/freesurfer/man/aparcstats2table.Rd |only freesurfer-1.8.1/freesurfer/man/aparcstats2table.help.Rd |only freesurfer-1.8.1/freesurfer/man/asegstats2table.Rd |only freesurfer-1.8.1/freesurfer/man/asegstats2table.help.Rd |only freesurfer-1.8.1/freesurfer/man/check_fs_result.Rd |only freesurfer-1.8.1/freesurfer/man/freesurfer_read3.Rd |only freesurfer-1.8.1/freesurfer/man/freesurfer_read3_con.Rd |only freesurfer-1.8.1/freesurfer/man/freesurferdir.Rd |only freesurfer-1.8.1/freesurfer/man/fs_subj_dir.Rd |only freesurfer-1.8.1/freesurfer/man/get_fs_output.Rd |only freesurfer-1.8.1/freesurfer/man/mnc2nii.help.Rd |only freesurfer-1.8.1/freesurfer/man/mri_convert.help.Rd |only freesurfer-1.8.1/freesurfer/man/mri_segment.help.Rd |only freesurfer-1.8.1/freesurfer/man/mri_surf2surf.help.Rd |only freesurfer-1.8.1/freesurfer/man/mri_watershed.help.Rd |only freesurfer-1.8.1/freesurfer/man/mris_convert.help.Rd |only freesurfer-1.8.1/freesurfer/man/mris_convert_annot.Rd |only freesurfer-1.8.1/freesurfer/man/mris_convert_curv.Rd |only freesurfer-1.8.1/freesurfer/man/mris_convert_normals.Rd |only freesurfer-1.8.1/freesurfer/man/mris_convert_vertex.Rd |only freesurfer-1.8.1/freesurfer/man/nii2mnc.help.Rd |only freesurfer-1.8.1/freesurfer/man/nu_correct.help.Rd |only freesurfer-1.8.1/freesurfer/man/readmgz.Rd |only freesurfer-1.8.1/freesurfer/man/readmnc.Rd |only freesurfer-1.8.1/freesurfer/man/recon_all.Rd |only freesurfer-1.8.1/freesurfer/man/run_check_fs_cmd.Rd |only freesurfer-1.8.1/freesurfer/man/trac_all.Rd |only freesurfer-1.8.1/freesurfer/man/trac_manual.Rd |only freesurfer-1.8.1/freesurfer/man/tracker.Rd |only freesurfer-1.8.1/freesurfer/vignettes/exploring_included_data.Rmd |only freesurfer-1.9.0/freesurfer/DESCRIPTION | 60 - 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freesurfer-1.9.0/freesurfer/R/mri_info.R | 19 freesurfer-1.9.0/freesurfer/R/mri_mask.R | 54 - freesurfer-1.9.0/freesurfer/R/mri_normalize.R | 37 freesurfer-1.9.0/freesurfer/R/mri_segment.R | 39 freesurfer-1.9.0/freesurfer/R/mri_surf2surf.R | 207 +--- freesurfer-1.9.0/freesurfer/R/mri_synthstrip.R | 62 - freesurfer-1.9.0/freesurfer/R/mri_vol2vol.R |only freesurfer-1.9.0/freesurfer/R/mri_watershed.R | 25 freesurfer-1.9.0/freesurfer/R/mris_convert.R | 154 ++- freesurfer-1.9.0/freesurfer/R/mris_euler_number.R | 172 ++- freesurfer-1.9.0/freesurfer/R/nu_correct.R | 107 +- freesurfer-1.9.0/freesurfer/R/read_annotation.R | 171 +-- freesurfer-1.9.0/freesurfer/R/read_aseg_stats.R | 189 ++- freesurfer-1.9.0/freesurfer/R/read_fs_table.R | 168 ++- freesurfer-1.9.0/freesurfer/R/read_label.R | 44 freesurfer-1.9.0/freesurfer/R/read_mgz.R |only freesurfer-1.9.0/freesurfer/R/read_mnc.R |only freesurfer-1.9.0/freesurfer/R/recon_all.R | 169 ++- freesurfer-1.9.0/freesurfer/R/recon_manual.R | 184 ++- freesurfer-1.9.0/freesurfer/R/reconner.R | 145 +- freesurfer-1.9.0/freesurfer/R/stats2table.R |only freesurfer-1.9.0/freesurfer/R/surf_convert.R | 30 freesurfer-1.9.0/freesurfer/R/tracker.R | 200 +++ freesurfer-1.9.0/freesurfer/R/utils-files.R |only freesurfer-1.9.0/freesurfer/R/utils-outputs.R |only freesurfer-1.9.0/freesurfer/R/utils.R |only freesurfer-1.9.0/freesurfer/build/vignette.rds |binary freesurfer-1.9.0/freesurfer/inst/CITATION | 51 - 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freesurfer-1.9.0/freesurfer/man/mri_synthstrip.Rd | 11 freesurfer-1.9.0/freesurfer/man/mri_synthstrip.help.Rd | 5 freesurfer-1.9.0/freesurfer/man/mri_vol2vol.Rd |only freesurfer-1.9.0/freesurfer/man/mri_watershed.Rd | 20 freesurfer-1.9.0/freesurfer/man/mris_convert.Rd | 98 + freesurfer-1.9.0/freesurfer/man/mris_euler_number.Rd | 38 freesurfer-1.9.0/freesurfer/man/mris_euler_number.help.Rd | 8 freesurfer-1.9.0/freesurfer/man/nii2mnc.Rd | 22 freesurfer-1.9.0/freesurfer/man/nu_correct.Rd | 56 - freesurfer-1.9.0/freesurfer/man/read_annotation.Rd | 18 freesurfer-1.9.0/freesurfer/man/read_aseg_stats.Rd | 101 + freesurfer-1.9.0/freesurfer/man/read_fs_label.Rd | 18 freesurfer-1.9.0/freesurfer/man/read_fs_table.Rd | 56 - freesurfer-1.9.0/freesurfer/man/read_mgz.Rd |only freesurfer-1.9.0/freesurfer/man/read_mnc.Rd |only freesurfer-1.9.0/freesurfer/man/recon.Rd | 251 +--- freesurfer-1.9.0/freesurfer/man/recon_manual.Rd | 125 ++ freesurfer-1.9.0/freesurfer/man/reconner.Rd | 50 freesurfer-1.9.0/freesurfer/man/set_fs_subj_dir.Rd | 17 freesurfer-1.9.0/freesurfer/man/stats2table.Rd |only freesurfer-1.9.0/freesurfer/man/surf_convert.Rd | 4 freesurfer-1.9.0/freesurfer/man/surface_to_obj.Rd | 10 freesurfer-1.9.0/freesurfer/man/surface_to_triangles.Rd | 49 freesurfer-1.9.0/freesurfer/man/temp_file.Rd |only freesurfer-1.9.0/freesurfer/man/trac.Rd |only freesurfer-1.9.0/freesurfer/tests |only freesurfer-1.9.0/freesurfer/vignettes/advance_future.Rmd |only freesurfer-1.9.0/freesurfer/vignettes/analysing_visualizing.Rmd |only freesurfer-1.9.0/freesurfer/vignettes/analysing_visualizing.Rmd.orig |only freesurfer-1.9.0/freesurfer/vignettes/freesurfer.Rmd |only freesurfer-1.9.0/freesurfer/vignettes/image_processing.Rmd |only freesurfer-1.9.0/freesurfer/vignettes/image_processing.Rmd.orig |only freesurfer-1.9.0/freesurfer/vignettes/recon-all.Rmd |only freesurfer-1.9.0/freesurfer/vignettes/ref.bib |only 171 files changed, 3971 insertions(+), 2294 deletions(-)
Title: Soil Organic Carbon and CN Ratio Driven Nitrogen Modelling
Framework
Description: Can be used to model the fate of soil organic carbon and soil organic nitrogen and to calculate N mineralisation rates. Provides a framework that numerically solves differential equations of soil organic carbon models based on first-order kinetics and extends these models to include the nitrogen component. The name 'sorcering' is an acronym for 'Soil ORganic Carbon & CN Ratio drIven Nitrogen modellinG framework'.
Author: Marc Scherstjanoi [aut, cre],
Rene Dechow [aut]
Maintainer: Marc Scherstjanoi <marc.scherstjanoi@thuenen.de>
Diff between sorcering versions 1.2.3 dated 2026-05-05 and 1.2.4 dated 2026-10-07
DESCRIPTION | 8 ++-- MD5 | 18 ++++----- NEWS.md | 22 +++++++++-- build/partial.rdb |binary build/sorcering.pdf |binary build/stage23.rdb |binary build/vignette.rds |binary inst/doc/sorcering.pdf |binary src/sorcering.cpp | 77 +++++++++++++++++++++++---------------- vignettes/sorcering_vignette.pdf |binary 10 files changed, 78 insertions(+), 47 deletions(-)
Title: Statistical Catch-at-Age Plotting Environment
Description: Import, plot, and diagnose results from statistical
catch-at-age models, used in fisheries stock assessment.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between scape versions 2.3.5 dated 2024-10-22 and 2.3.6 dated 2026-10-07
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS.md | 11 ++++++++++- build/partial.rdb |binary build/vignette.rds |binary data/x.cod.rda |binary data/x.ling.rda |binary data/x.oreo.rda |binary data/x.saithe.rda |binary data/x.sbw.rda |binary data/xmcmc.rda |binary data/xproj.rda |binary inst/doc/dsc-vignette.pdf |binary inst/doc/gallery.R | 2 -- inst/doc/gallery.pdf |binary inst/doc/mymodel.pdf |binary 16 files changed, 29 insertions(+), 22 deletions(-)
Title: MCMC Diagnostic Plots
Description: Markov chain Monte Carlo diagnostic plots. The purpose of the
package is to combine existing tools from the 'coda' and 'lattice' packages,
and make it easy to adjust graphical details.
Author: Arni Magnusson [aut, cre],
Ian Stewart [aut]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between plotMCMC versions 2.0.1 dated 2020-11-23 and 2.0.2 dated 2026-10-07
plotMCMC-2.0.1/plotMCMC/NEWS |only plotMCMC-2.0.1/plotMCMC/data/xbio.R |only plotMCMC-2.0.1/plotMCMC/data/xpar.R |only plotMCMC-2.0.1/plotMCMC/data/xpro.R |only plotMCMC-2.0.1/plotMCMC/data/xrec.R |only plotMCMC-2.0.2/plotMCMC/DESCRIPTION | 10 ++++---- plotMCMC-2.0.2/plotMCMC/MD5 | 29 ++++++++++++------------ plotMCMC-2.0.2/plotMCMC/NEWS.md |only plotMCMC-2.0.2/plotMCMC/build/partial.rdb |only plotMCMC-2.0.2/plotMCMC/build/vignette.rds |binary plotMCMC-2.0.2/plotMCMC/data/xbio.rda |only plotMCMC-2.0.2/plotMCMC/data/xpar.rda |only plotMCMC-2.0.2/plotMCMC/data/xpro.rda |only plotMCMC-2.0.2/plotMCMC/data/xrec.rda |only plotMCMC-2.0.2/plotMCMC/inst/doc/gallery.R | 2 - plotMCMC-2.0.2/plotMCMC/inst/doc/gallery.pdf |binary plotMCMC-2.0.2/plotMCMC/man/plotMCMC-package.Rd | 19 +++++++++------ plotMCMC-2.0.2/plotMCMC/man/xbio.Rd | 27 ++++++++++++---------- plotMCMC-2.0.2/plotMCMC/man/xpar.Rd | 27 ++++++++++++---------- plotMCMC-2.0.2/plotMCMC/man/xpro.Rd | 28 ++++++++++++----------- plotMCMC-2.0.2/plotMCMC/man/xrec.Rd | 27 ++++++++++++---------- 21 files changed, 92 insertions(+), 77 deletions(-)
More information about installationDriver at CRAN
Permanent link
Title: Automatic Plotting and Theming of Many Graphs
Description: Visual exploration and presentation of networks should not be difficult.
This package includes functions for plotting networks and network-related metrics with sensible and pretty defaults.
It includes 'ggplot2'-based plot methods for many popular network package classes.
It also includes some novel layout algorithms, and options for straightforward, consistent themes.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between autograph versions 1.2.3 dated 2026-09-09 and 1.2.6 dated 2026-10-07
DESCRIPTION | 10 MD5 | 94 NEWS.md | 70 R/autograph-defunct.R | 45 R/graph_aes.R | 126 R/graph_backbone.R | 22 R/graph_checks.R | 15 R/graph_edges.R | 32 R/graph_labels.R | 36 R/graph_layout.R | 2 R/graphr.R | 72 R/graphs.R | 7 R/grapht.R | 126 R/layout_concentric.R | 8 R/layout_correspondence.R | 2 R/layout_layered.R | 6 R/plot_analysis.R | 3 R/theme_palette_get.R | 2 inst/tutorials/autograph1/visualisation.Rmd | 1655 ++++++---- inst/tutorials/autograph1/visualisation.html | 3985 +++++++++++++++----------- inst/tutorials/autograph1/visualisation_files |only man/ag_call.Rd | 2 man/plot_graphr.Rd | 45 man/plot_grapht.Rd | 72 tests/testthat.R | 7 tests/testthat/Rplots.pdf |binary tests/testthat/helper-manynet.R | 39 tests/testthat/test-functional_aes.R | 1 tests/testthat/test-functional_coverage.R | 2 tests/testthat/test-functional_layouts.R | 4 tests/testthat/test-functional_plots.R | 7 tests/testthat/test-graph_backbone.R | 9 tests/testthat/test-graph_snap.R | 5 tests/testthat/test-graphr.R | 201 + tests/testthat/test-grapht.R | 42 tests/testthat/test-layout_concentric.R | 7 tests/testthat/test-layout_correspondence.R | 5 tests/testthat/test-layout_layered.R | 6 tests/testthat/test-layout_levels.R | 6 tests/testthat/test-layout_scaling.R | 5 40 files changed, 4185 insertions(+), 2598 deletions(-)
Title: Publication-Ready Tables and Summaries for Exponential-Family
Random Graph Models
Description: Creates publication-ready tables documenting
exponential-family random graph models (ERGMs), a class of statistical
models for social networks (Robins et al., 2007,
<doi:10.1016/j.socnet.2006.08.002>). Tables describe model terms
through their definitions, mathematical representations, and graphical
representations, and can be generated from ERGM formulas or from
models fitted with the 'ergm' package (Hunter et al., 2008,
<doi:10.18637/jss.v024.i03>). Resulting tables can be integrated into
'quarto' and 'rmarkdown' documents.
Author: George Vega Yon [aut, cre]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between tabulergm versions 0.1.0 dated 2026-08-21 and 0.2.0 dated 2026-10-07
DESCRIPTION | 6 MD5 | 123 ++++++--- NAMESPACE | 5 NEWS.md | 108 ++++++-- R/notation.R | 51 +++- R/parse_ergm.R | 30 +- R/table_styles.R |only R/tabulergm_save.R | 192 ++++++++++++++- R/tabulergm_table.R | 143 ++++++++--- R/term_db.R | 104 ++++++-- README.md | 190 +++++++++++++-- inst/doc/ergm-with-tabulergm.R | 33 ++ inst/doc/ergm-with-tabulergm.Rmd | 62 ++++ inst/doc/ergm-with-tabulergm.html | 396 +++++++++++++++++++++++++------ inst/terms/altkstar.undirected.yml | 2 inst/terms/b1nodematch.undirected.yml | 4 inst/terms/b2nodematch.undirected.yml | 4 inst/terms/concurrent.undirected.yml |only inst/terms/degree.undirected.yml |only inst/terms/dgwdsp.directed.yml |only inst/terms/dgwesp.directed.yml |only inst/terms/edgecov.directed.yml | 3 inst/terms/edgecov.undirected.yml | 3 inst/terms/edges.directed.yml | 3 inst/terms/edges.undirected.yml | 3 inst/terms/gwb1degree.undirected.yml |only inst/terms/gwb1dsp.undirected.yml | 5 inst/terms/gwb2degree.undirected.yml |only inst/terms/gwb2dsp.undirected.yml | 5 inst/terms/gwdegree.undirected.yml | 2 inst/terms/gwdsp.directed.yml | 2 inst/terms/gwdsp.undirected.yml | 2 inst/terms/gwesp.directed.yml | 2 inst/terms/gwesp.undirected.yml | 2 inst/terms/gwidegree.directed.yml |only inst/terms/gwodegree.directed.yml |only inst/terms/isolates.directed.yml |only inst/terms/isolates.undirected.yml |only inst/terms/istar.directed.yml |only inst/terms/kstar.undirected.yml |only inst/terms/nodeifactor.directed.yml |only inst/terms/nodematch.directed.yml | 2 inst/terms/nodematch.undirected.yml | 2 inst/terms/nodemix.directed.yml | 5 inst/terms/nodemix.undirected.yml | 5 inst/terms/nodeofactor.directed.yml |only inst/terms/ostar.directed.yml |only inst/terms/triangle.directed.yml | 4 inst/tinytest/test_parse_ergm.R | 212 ++++------------ inst/tinytest/test_table_styles.R |only inst/tinytest/test_tabulergm_save.R | 12 inst/tinytest/test_tabulergm_table.R | 142 +++++++---- inst/tinytest/test_term_db.R | 430 ++++++++-------------------------- inst/tinytest/test_term_meta.R | 291 +++++++---------------- man/figures/README-altkstar.png |binary man/figures/README-concurrent.png |only man/figures/README-degree.png |only man/figures/README-dgwdsp.png |only man/figures/README-dgwesp.png |only man/figures/README-gwb1degree.png |only man/figures/README-gwb2degree.png |only man/figures/README-gwdegree.png |binary man/figures/README-gwidegree.png |only man/figures/README-gwodegree.png |only man/figures/README-isolates.png |only man/figures/README-istar.png |only man/figures/README-kstar.png |only man/figures/README-nodeifactor.png |only man/figures/README-nodeofactor.png |only man/figures/README-ostar.png |only man/parse_ergm_formula.Rd | 10 man/parse_ergm_model.Rd | 4 man/tabulergm-notation.Rd | 53 +++- man/tabulergm_save.Rd | 15 - man/tabulergm_table.Rd | 26 +- man/tabulergm_view.Rd | 16 + man/with_style_name_over_formula.Rd |only man/with_style_plain.Rd |only vignettes/ergm-with-tabulergm.Rmd | 62 ++++ 79 files changed, 1759 insertions(+), 1017 deletions(-)
Title: Simple Generalizability Theory for Crossed and Nested Designs
Description: Provides a small, beginner-friendly interface for estimating
variance components in simple generalizability theory designs. The package
currently supports a fully crossed persons-by-items design, generic
balanced crossed designs with one or more additional facets such as raters,
occasions, or forms, and a simple items-within-person nested design, along
with design-study summaries for relative and absolute decisions. Includes
data diagnostics, measurement error intervals, design comparison and cost
planning, sensitivity analysis, Gaussian simulation and parametric bootstrap
uncertainty estimates for balanced crossed designs.
Author: Ujjwal Tyagi [aut, cre]
Maintainer: Ujjwal Tyagi <ujjwaltyagiii@gmail.com>
Diff between gtheoryr versions 0.1.0 dated 2026-03-19 and 0.2.0 dated 2026-10-07
DESCRIPTION | 24 MD5 | 36 NAMESPACE | 27 NEWS.md |only R/gstudy.R | 1123 +++++++++++++++++++++++-- R/planning.R |only README.md | 94 ++ inst/doc |only inst/examples |only inst/extdata/crossed_scores_rater.csv |only inst/extdata/crossed_scores_rater_occasion.csv |only man/bootstrap_gstudy.Rd |only man/check_gstudy_design.Rd |only man/dstudy_grid.Rd |only man/dstudy_pxif.Rd |only man/dstudy_pxir.Rd |only man/dstudy_sensitivity.Rd |only man/error_budget.Rd |only man/extractors.Rd |only man/gstudy_crossed.Rd |only man/gstudy_pxif.Rd |only man/gstudy_pxir.Rd |only man/gstudy_pxiro.Rd |only man/gtheoryr-package.Rd | 7 man/optimize_dstudy.Rd |only man/score_interval.Rd |only man/sem_gtheory.Rd |only man/simulate_gstudy.Rd |only man/variance_proportions_table.Rd |only tests |only 30 files changed, 1223 insertions(+), 88 deletions(-)
Title: Bayesian MI-LASSO for Variable Selection on Multiply-Imputed
Datasets
Description: Provides a suite of Bayesian MI-LASSO for variable selection methods for multiply-imputed datasets. The package includes four Bayesian MI-LASSO models using shrinkage (Multi-Laplace, Horseshoe, ARD) and Spike-and-Slab (Spike-and-Laplace) priors, along with tools for model fitting via MCMC, four-step projection predictive variable selection, and hyperparameter calibration. Methods are suitable for both continuous and binary covariates under missing-at-random or missing-completely-at-random assumptions. See Zou, J., Wang, S. and Chen, Q. (2025), Bayesian MI-LASSO for Variable Selection on Multiply-Imputed Data. ArXiv, 2211.00114. <doi:10.48550/arXiv.2211.00114> for more details. We also provide the frequentist MI-LASSO function.
Author: Jungang Zou [aut, cre],
Sijian Wang [aut],
Qixuan Chen [aut]
Maintainer: Jungang Zou <jungang.zou@gmail.com>
Diff between BMIselect versions 1.0.9 dated 2026-08-21 and 1.0.10 dated 2026-10-07
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ R/MI_LASSO.R | 8 +++++++- R/bmiselect.R | 43 ++++++++++++++++++++++++++++++------------- R/select_criteria.R | 20 ++++++++++++++++++-- R/sim.R | 17 +++++++++++------ inst/doc/Introduction.Rmd | 4 ++-- inst/doc/Introduction.html | 25 ++++++++++++++----------- man/BMI_LASSO.Rd | 14 +++++++++----- man/sim_A.Rd | 4 ++-- man/sim_B.Rd | 4 ++-- man/sim_C.Rd | 2 +- vignettes/Introduction.Rmd | 4 ++-- 13 files changed, 115 insertions(+), 64 deletions(-)
Title: An Interface to the Reptile Database
Description: Provides tools to retrieve and summarize taxonomic information and synonymy data for reptile species using data scraped from The Reptile Database website (<https://reptile-database.reptarium.cz/>). Outputs include clean and structured data frames useful for ecological, evolutionary, and conservation research.
Author: Joao Paulo dos Santos Vieira-Alencar [aut, cre] ,
Christoph Liedtke [aut]
Maintainer: Joao Paulo dos Santos Vieira-Alencar <joaopaulo.valencar@gmail.com>
Diff between letsRept versions 1.1.2 dated 2026-06-22 and 1.1.3 dated 2026-10-07
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS.md | 6 ++++++ R/data_allReptiles.R | 2 +- R/data_synonyms.R | 2 +- R/data_synonymsRef.R | 6 +++--- README.md | 12 ++++-------- build/vignette.rds |binary data/allReptiles.rda |binary data/allSynonyms.rda |binary data/allSynonymsRef.rda |binary inst/doc/case-study.html | 6 +++--- man/allReptiles.Rd | 2 +- man/allSynonyms.Rd | 2 +- man/allSynonymsRef.Rd | 6 +++--- 15 files changed, 41 insertions(+), 39 deletions(-)
Title: A Comprehensive and Intuitive R Package for Stepwise Regression
Analysis
Description: Stepwise regression is a statistical technique used for model selection. This package streamlines stepwise regression analysis by supporting multiple regression types(linear, Cox, logistic, Poisson, Gamma, and negative binomial), incorporating popular selection strategies(forward, backward, bidirectional, and subset), and offering essential metrics. It enables users to apply multiple selection strategies and metrics in a single function call, visualize variable selection processes, and export results in various formats. StepReg offers a data-splitting option to address potential issues with invalid statistical inference and a randomized forward selection option to avoid overfitting. We validated StepReg's accuracy using public datasets within the SAS software environment. For an interactive web interface, users can install the companion 'StepRegShiny' package. The methodology is described in Li et al. (2026) <doi:10.32614/RJ-2026-005>.
Author: Junhui Li [cre, aut] ,
Kai Hu [aut],
Xiaohuan Lu [aut],
Sushmita N Nayak [ctb, aut],
Cesar Bautista Sotelo [ctb, aut],
Michael A Lodato [ctb, aut],
Wenxin Liu [aut],
Lihua Julie Zhu [aut]
Maintainer: Junhui Li <junhui.li11@umassmed.edu>
Diff between StepReg versions 1.6.8 dated 2026-09-20 and 1.6.9 dated 2026-10-06
DESCRIPTION | 10 MD5 | 14 build/vignette.rds |binary inst/doc/StepReg.R | 393 ++++ inst/doc/StepReg.Rmd | 748 +++++++++ inst/doc/StepReg.html | 3938 +++++++++++++++++++++++++++++++++++++++++++++---- man/StepReg-package.Rd | 2 vignettes/StepReg.Rmd | 748 +++++++++ 8 files changed, 5560 insertions(+), 293 deletions(-)
Title: Paired Mass Distance Analysis for GC/LC-MS Based Non-Targeted
Analysis and Reactomics Analysis
Description: Paired mass distance (PMD) analysis proposed in Yu, Olkowicz and Pawliszyn (2018) <doi:10.1016/j.aca.2018.10.062> and PMD based reactomics analysis proposed in Yu and Petrick (2020) <doi:10.1038/s42004-020-00403-z> for gas/liquid chromatography–mass spectrometry (GC/LC-MS) based non-targeted analysis. PMD analysis including GlobalStd algorithm and structure/reaction directed analysis. GlobalStd algorithm could found independent peaks in m/z-retention time profiles based on retention time hierarchical cluster analysis and frequency analysis of paired mass distances within retention time groups. Structure directed analysis could be used to find potential relationship among those independent peaks in different retention time groups based on frequency of paired mass distances. Reactomics analysis could also be performed to build PMD network, assign sources and make biomarker reaction discovery. GUIs for PMD analysis is also included as 'shiny' applications.
Author: Miao YU [aut, cre]
Maintainer: Miao YU <yufreecas@gmail.com>
Diff between pmd versions 0.2.7 dated 2025-01-15 and 0.3.0 dated 2026-10-06
pmd-0.2.7/pmd/man/getcluster.Rd |only pmd-0.2.7/pmd/man/getcorcluster.Rd |only pmd-0.3.0/pmd/DESCRIPTION | 13 pmd-0.3.0/pmd/MD5 | 71 - pmd-0.3.0/pmd/NAMESPACE | 9 pmd-0.3.0/pmd/NEWS.md | 25 pmd-0.3.0/pmd/R/data.R | 34 pmd-0.3.0/pmd/R/globalstd.R | 1632 ++++++++++++++---------------- pmd-0.3.0/pmd/R/pmdanno.R | 211 +-- pmd-0.3.0/pmd/R/pmdda.R | 63 - pmd-0.3.0/pmd/R/pmdvis.R | 26 pmd-0.3.0/pmd/R/sda.R | 996 +++++++++++------- pmd-0.3.0/pmd/R/shiny.R | 14 pmd-0.3.0/pmd/README.md | 27 pmd-0.3.0/pmd/build/partial.rdb |binary pmd-0.3.0/pmd/build/vignette.rds |binary pmd-0.3.0/pmd/data/pmdchain.rda |only pmd-0.3.0/pmd/data/sda.rda |binary pmd-0.3.0/pmd/inst/doc/globalstd.R | 47 pmd-0.3.0/pmd/inst/doc/globalstd.Rmd | 66 - pmd-0.3.0/pmd/inst/doc/globalstd.html | 695 +++++++----- pmd-0.3.0/pmd/inst/doc/reactomics.R | 7 pmd-0.3.0/pmd/inst/doc/reactomics.Rmd | 13 pmd-0.3.0/pmd/inst/doc/reactomics.html | 1300 ++++++++++------------- pmd-0.3.0/pmd/inst/shinyapp/pmd.Rmd | 40 pmd-0.3.0/pmd/inst/shinyapp/pmdnet.Rmd | 105 + pmd-0.3.0/pmd/man/getcda.Rd | 2 pmd-0.3.0/pmd/man/getchainseq.Rd |only pmd-0.3.0/pmd/man/getcorpseudospectrum.Rd |only pmd-0.3.0/pmd/man/gethomolog.Rd |only pmd-0.3.0/pmd/man/getnse.Rd |only pmd-0.3.0/pmd/man/getpaired.Rd | 6 pmd-0.3.0/pmd/man/getpseudospectrum.Rd |only pmd-0.3.0/pmd/man/getsim.Rd |only pmd-0.3.0/pmd/man/getstd.Rd | 16 pmd-0.3.0/pmd/man/globalstd.Rd | 3 pmd-0.3.0/pmd/man/parse_pmd_pattern.Rd |only pmd-0.3.0/pmd/man/plotpaired.Rd | 4 pmd-0.3.0/pmd/man/pmdchain.Rd |only pmd-0.3.0/pmd/man/sda.Rd | 4 pmd-0.3.0/pmd/vignettes/globalstd.Rmd | 66 - pmd-0.3.0/pmd/vignettes/reactomics.Rmd | 13 42 files changed, 2951 insertions(+), 2557 deletions(-)
Title: Infrastructure for Ordering Objects Using Seriation
Description: Infrastructure for ordering objects with an implementation of several
seriation/sequencing/ordination techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also provides (optimally) reordered heatmaps,
color images and clustering visualizations like dissimilarity plots, and
visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.
Author: Michael Hahsler [aut, cre, cph] ,
Christian Buchta [aut, cph],
Kurt Hornik [aut, cph] ,
David Barnett [ctb],
Michael Brusco [ctb, cph],
Michael Friendly [ctb],
Hans-Friedrich Koehn [ctb, cph],
Fionn Murtagh [ctb, cph],
Stephanie Stahl [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between seriation versions 1.5.8 dated 2025-08-20 and 1.6.0 dated 2026-10-06
seriation-1.5.8/seriation/R/seriate_SGD.R |only seriation-1.5.8/seriation/R/seriate_vegan.R |only seriation-1.5.8/seriation/inst/README_files |only seriation-1.5.8/seriation/inst/doc/seriation.Rnw |only seriation-1.5.8/seriation/inst/doc/seriation.pdf |only seriation-1.5.8/seriation/vignettes/seriation.Rnw |only seriation-1.6.0/seriation/DESCRIPTION | 32 seriation-1.6.0/seriation/MD5 | 211 ++--- seriation-1.6.0/seriation/NAMESPACE | 39 seriation-1.6.0/seriation/NEWS.md | 16 seriation-1.6.0/seriation/R/AAA_check_installed.R | 4 seriation-1.6.0/seriation/R/AAA_registry_criterion.R | 2 seriation-1.6.0/seriation/R/AAA_registry_seriate.R | 2 seriation-1.6.0/seriation/R/AAA_seriation-package.R | 18 seriation-1.6.0/seriation/R/Chameleon.R | 8 seriation-1.6.0/seriation/R/Psych24.R | 1 seriation-1.6.0/seriation/R/Wood.R | 3 seriation-1.6.0/seriation/R/criterion.R | 4 seriation-1.6.0/seriation/R/dissplot.R | 2 seriation-1.6.0/seriation/R/hmap.R | 8 seriation-1.6.0/seriation/R/lines_and_ordered_data.R | 2 seriation-1.6.0/seriation/R/lle.R | 1 seriation-1.6.0/seriation/R/permute.R | 7 seriation-1.6.0/seriation/R/pimage.R | 4 seriation-1.6.0/seriation/R/register_GA.R | 2 seriation-1.6.0/seriation/R/register_optics.R | 3 seriation-1.6.0/seriation/R/register_smacof.R | 2 seriation-1.6.0/seriation/R/register_tsne.R | 8 seriation-1.6.0/seriation/R/register_vegan.R |only seriation-1.6.0/seriation/R/reorder.hclust.R | 1 seriation-1.6.0/seriation/R/seriate.R | 46 - seriation-1.6.0/seriation/R/seriate_GSA.R | 3 seriation-1.6.0/seriation/R/seriate_HC.R | 2 seriation-1.6.0/seriation/R/seriate_MDS.R | 3 seriation-1.6.0/seriation/R/seriate_PCA.R | 6 seriation-1.6.0/seriation/R/seriate_SGLS.R |only seriation-1.6.0/seriation/R/seriate_TSP.R | 8 seriation-1.6.0/seriation/R/seriate_VAT.R | 2 seriation-1.6.0/seriation/R/seriate_best.R | 4 seriation-1.6.0/seriation/R/seriate_heatmap.R | 2 seriation-1.6.0/seriation/R/uniscale.R | 3 seriation-1.6.0/seriation/README.md | 93 +- seriation-1.6.0/seriation/build/partial.rdb |binary seriation-1.6.0/seriation/build/vignette.rds |binary seriation-1.6.0/seriation/inst/doc/clustering.R |only seriation-1.6.0/seriation/inst/doc/clustering.Rmd |only seriation-1.6.0/seriation/inst/doc/clustering.html |only seriation-1.6.0/seriation/inst/doc/comparison.R |only seriation-1.6.0/seriation/inst/doc/comparison.Rmd |only seriation-1.6.0/seriation/inst/doc/comparison.html |only seriation-1.6.0/seriation/inst/doc/correlation_matrix.R |only seriation-1.6.0/seriation/inst/doc/correlation_matrix.Rmd |only seriation-1.6.0/seriation/inst/doc/correlation_matrix.html |only seriation-1.6.0/seriation/inst/doc/heatmaps.R |only seriation-1.6.0/seriation/inst/doc/heatmaps.Rmd |only seriation-1.6.0/seriation/inst/doc/heatmaps.html |only seriation-1.6.0/seriation/inst/doc/seriation.R | 420 +--------- seriation-1.6.0/seriation/inst/doc/seriation.Rmd |only seriation-1.6.0/seriation/inst/doc/seriation.html |only seriation-1.6.0/seriation/inst/doc/seriation_criteria.R |only seriation-1.6.0/seriation/inst/doc/seriation_criteria.Rmd |only seriation-1.6.0/seriation/inst/doc/seriation_criteria.html |only seriation-1.6.0/seriation/inst/doc/seriation_methods.R |only seriation-1.6.0/seriation/inst/doc/seriation_methods.Rmd |only seriation-1.6.0/seriation/inst/doc/seriation_methods.html |only seriation-1.6.0/seriation/inst/doc/seriation_vignette.R |only seriation-1.6.0/seriation/inst/doc/seriation_vignette.Rnw |only seriation-1.6.0/seriation/inst/doc/seriation_vignette.pdf |only seriation-1.6.0/seriation/inst/doc/tpPL.R |only seriation-1.6.0/seriation/inst/doc/tpPL.Rmd |only seriation-1.6.0/seriation/inst/doc/tpPL.html |only seriation-1.6.0/seriation/man/Chameleon.Rd | 7 seriation-1.6.0/seriation/man/Irish.Rd | 7 seriation-1.6.0/seriation/man/LS.Rd | 6 seriation-1.6.0/seriation/man/Munsingen.Rd | 7 seriation-1.6.0/seriation/man/Psych24.Rd | 13 seriation-1.6.0/seriation/man/SupremeCourt.Rd | 7 seriation-1.6.0/seriation/man/Townships.Rd | 7 seriation-1.6.0/seriation/man/VAT.Rd | 12 seriation-1.6.0/seriation/man/Wood.Rd | 10 seriation-1.6.0/seriation/man/Zoo.Rd | 7 seriation-1.6.0/seriation/man/bertinplot.Rd | 12 seriation-1.6.0/seriation/man/create_lines_data.Rd | 7 seriation-1.6.0/seriation/man/criterion.Rd | 6 seriation-1.6.0/seriation/man/dissplot.Rd | 14 seriation-1.6.0/seriation/man/figures/README-configuration-1.png |only seriation-1.6.0/seriation/man/figures/README-seriation-1.png |only seriation-1.6.0/seriation/man/figures/README-seriation-2.png |only seriation-1.6.0/seriation/man/get_order.Rd | 13 seriation-1.6.0/seriation/man/hmap.Rd | 20 seriation-1.6.0/seriation/man/is.robinson.Rd | 5 seriation-1.6.0/seriation/man/lle.Rd | 6 seriation-1.6.0/seriation/man/palette.Rd | 20 seriation-1.6.0/seriation/man/permutation_vector2matrix.Rd | 13 seriation-1.6.0/seriation/man/permute.Rd | 16 seriation-1.6.0/seriation/man/pimage.Rd | 16 seriation-1.6.0/seriation/man/register_DendSer.Rd | 17 seriation-1.6.0/seriation/man/register_GA.Rd | 19 seriation-1.6.0/seriation/man/register_optics.Rd | 17 seriation-1.6.0/seriation/man/register_smacof.Rd | 17 seriation-1.6.0/seriation/man/register_tsne.Rd | 19 seriation-1.6.0/seriation/man/register_umap.Rd | 17 seriation-1.6.0/seriation/man/register_vegan.Rd |only seriation-1.6.0/seriation/man/registry_for_criterion_methods.Rd | 8 seriation-1.6.0/seriation/man/registry_for_seriation_methods.Rd | 23 seriation-1.6.0/seriation/man/reorder.hclust.Rd | 11 seriation-1.6.0/seriation/man/ser_dist.Rd | 13 seriation-1.6.0/seriation/man/ser_permutation.Rd | 13 seriation-1.6.0/seriation/man/ser_permutation_vector.Rd | 13 seriation-1.6.0/seriation/man/seriate.Rd | 65 - 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Title: Cell Type Marker Database for Single-Cell RNA-Seq Data
Description: Provides a meta-database of thousands of human and mouse cell
identity markers curated from multiple sources, along with methods for
cell type prediction based on marker gene overlaps or gene set
enrichment.
Author: Igor Dolgalev [aut, cre]
Maintainer: Igor Dolgalev <igor.dolgalev@nyumc.org>
Diff between clustermole versions 1.1.1 dated 2024-01-08 and 1.2.0 dated 2026-10-06
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Title: Data Structures for Brain Imaging Data
Description: A collection of data structures and methods for handling volumetric
brain imaging data, with a focus on functional magnetic resonance imaging (fMRI). Provides efficient
representations for three-dimensional and four-dimensional neuroimaging data through sparse and dense array
implementations, memory-mapped file access for large datasets, and
spatial transformation capabilities. Implements methods for image resampling,
spatial filtering, region of interest analysis, and connected component labeling. General introduction
to fMRI analysis can be found in Poldrack et al. (2024, "Handbook of functional MRI data analysis",
<ISBN:9781108795760>).
Author: Bradley R Buchsbaum [aut, cre, cph]
Maintainer: Bradley R Buchsbaum <brad.buchsbaum@gmail.com>
Diff between neuroim2 versions 0.13.0 dated 2026-04-16 and 0.19.1 dated 2026-10-06
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Title: Multivariate Symmetric Uncertainty and Other Measurements
Description: Estimators for multivariate symmetrical uncertainty based
on the work of Gustavo Sosa et al. (2016)
<doi:10.48550/arXiv.1709.08730>, total correlation, information gain
and symmetrical uncertainty of categorical variables.
Author: Gustavo Sosa [aut],
Elias Maciel [cre]
Maintainer: Elias Maciel <eliasmacielr@gmail.com>
Diff between msu versions 0.0.1 dated 2017-09-30 and 0.1.0 dated 2026-10-06
DESCRIPTION | 15 +++++++-------- MD5 | 23 ++++++++++++----------- R/information_gain.R | 9 ++++----- R/msu.R | 19 +++++++------------ R/shannon_entropy.R | 13 ++++++------- R/total_correlation.R | 15 +++------------ R/utils.R | 9 +++++++++ README.md |only man/information_gain.Rd | 3 ++- man/multivar_joint_shannon_entropy.Rd | 2 +- man/shannon_entropy.Rd | 2 +- man/total_correlation.Rd | 2 +- tests/testthat/test-msu.R | 9 +++++++++ 13 files changed, 62 insertions(+), 59 deletions(-)
Title: Identification and Classification of the Most Influential Nodes
Description: Provides functions for the identification, classification, and
ranking of influential nodes and candidate features from network and omics
data. The package implements the Integrated Value of Influence (IVI) for
integrative network centrality analysis, the SIR-based Influence Ranking
(SIRIR) model for unsupervised influence ranking, and the Experimental
data-based Integrative Ranking (ExIR) model for prioritizing candidate
driver, biomarker, and mediator features from experimental omics data.
Functions are provided for network reconstruction from adjacency matrices
and data frames, topological analysis, centrality calculation, assessment
of associations between centrality measures, and conditional probability
analysis. ExIR supports bulk and single-cell omics data, including matrices,
sparse matrices, data frames, tibbles, and Seurat objects.
Author: Adrian Salavaty [aut, cre] ,
Mirana Ramialison [ths],
Peter D. Currie [ths]
Maintainer: Adrian Salavaty <abbas.salavaty@gmail.com>
Diff between influential versions 2.3.2 dated 2026-08-23 and 2.3.3 dated 2026-10-06
DESCRIPTION | 6 ++--- MD5 | 16 ++++++------- NEWS.md | 9 +++++-- R/comp-manipulate.R | 18 +++++++-------- R/sirir.R | 2 - inst/ShinyApps/ExIR/app.R | 48 +++++++++++++++++++++++----------------- inst/ShinyApps/IVI/app.R | 55 +++++++++++++++++++--------------------------- inst/doc/Vignettes.html | 4 +-- src/fcor_rcpp.cpp | 33 +++++++++++++++++++++++++++ 9 files changed, 114 insertions(+), 77 deletions(-)
Title: Execute and View Data Quality Checks on OMOP CDM Database
Description: Assesses data quality in Observational Medical Outcomes Partnership Common Data Model (OMOP CDM) databases. Executes data quality checks and provides an R 'shiny' application to view the results.
Author: Katy Sadowski [aut, cre],
Clair Blacketer [aut],
Maxim Moinat [aut],
Ajit Londhe [aut],
Anthony Sena [aut],
Anthony Molinaro [aut],
Frank DeFalco [aut],
Pavel Grafkin [aut]
Maintainer: Katy Sadowski <sadowski@ohdsi.org>
Diff between DataQualityDashboard versions 2.8.9 dated 2026-05-18 and 2.9.0 dated 2026-10-06
DESCRIPTION | 8 MD5 | 48 - NEWS.md | 18 R/constants.R | 2 R/executeDqChecks.R | 14 README.md | 4 inst/csv/OMOP_CDMv5.2_Field_Level.csv | 24 inst/csv/OMOP_CDMv5.3_Field_Level.csv | 603 +++++++++++------------ inst/csv/OMOP_CDMv5.3_Table_Level.csv | 45 - inst/csv/OMOP_CDMv5.4_Field_Level.csv | 262 +++++---- inst/csv/OMOP_CDMv5.4_Table_Level.csv | 73 +- inst/csv/OMOP_CDMv5.5_Check_Descriptions.csv |only inst/csv/OMOP_CDMv5.5_Concept_Level.csv |only inst/csv/OMOP_CDMv5.5_Field_Level.csv |only inst/csv/OMOP_CDMv5.5_Table_Level.csv |only inst/doc/AddNewCheck.html | 2 inst/doc/CheckStatusDefinitions.html | 2 inst/doc/DataQualityDashboard.html | 4 inst/doc/DataQualityDashboard.rmd | 2 inst/doc/DqdForCohorts.html | 2 inst/doc/SqlOnly.html | 2 inst/doc/Thresholds.html | 2 inst/sql/sql_server/concept_plausible_gender.sql | 4 man/executeDqChecks.Rd | 8 tests/testthat/test-executeDqChecks.R | 42 + tests/testthat/test-listChecks.R | 32 + vignettes/DataQualityDashboard.rmd | 2 27 files changed, 649 insertions(+), 556 deletions(-)
More information about DataQualityDashboard at CRAN
Permanent link
Title: Lagged and Moving-Average Exposure Features for Aeroallergen
Epidemiology
Description: Deterministic, group-safe utilities that transform daily
environmental exposure series (pollen and spore counts, with support for
other time-varying exposures such as ozone and particulate matter) into
analysis-ready lagged and moving-average exposure features. Functions
validate temporal regularity, assign ISO 8601 weeks and configurable
seasons, impute missing daily values transparently, and construct lagged
and windowed exposures suitable for environmental epidemiology and public
health analyses.
Author: Felix E. Rivera-Mariani [aut, cre]
Maintainer: Felix E. Rivera-Mariani <felixrm@friveram.com>
Diff between SporeLag versions 0.1.1 dated 2026-08-04 and 0.1.2 dated 2026-10-06
DESCRIPTION | 8 - MD5 | 20 +- NEWS.md | 11 + README.md | 23 +-- build/vignette.rds |binary inst/CITATION | 2 inst/WORDLIST | 2 inst/doc/getting-started.R | 107 +++++++++++++++ inst/doc/getting-started.Rmd | 272 ++++++++++++++++++++++++++++++++++++++ inst/doc/getting-started.html | 294 +++++++++++++++++++++++++++++++++++++++++- vignettes/getting-started.Rmd | 272 ++++++++++++++++++++++++++++++++++++++ 11 files changed, 979 insertions(+), 32 deletions(-)
Title: Forecast Verification Routines for Ensemble Forecasts of Weather
and Climate
Description: A collection of forecast verification routines developed for the SPECS
FP7 project. The emphasis is on comparative verification of ensemble forecasts of weather and climate.
Author: Stefan Siegert [aut, cre],
Jonas Bhend [ctb],
Igor Kroener [ctb],
Matteo De Felice [ctb]
Maintainer: Stefan Siegert <s.siegert@exeter.ac.uk>
Diff between SpecsVerification versions 0.5-3 dated 2020-02-26 and 0.5-4 dated 2026-10-06
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/FitAkdParameters.R | 2 +- R/SpecsVerification.R | 3 ++- R/eurotempforecast.R | 2 +- build/partial.rdb |binary man/FitAkdParameters.Rd | 2 +- man/SpecsVerification.Rd | 3 ++- man/eurotempforecast.Rd | 2 +- 9 files changed, 20 insertions(+), 18 deletions(-)
More information about SpecsVerification at CRAN
Permanent link
Title: Data Sonification - Turning Data into Sound
Description: Sonification (or audification) is the process of representing data by sounds in the audible range. This package provides the R function sonify() that transforms univariate data, sampled at regular or irregular intervals, into a continuous sound with time-varying frequency. The ups and downs in frequency represent the ups and downs in the data. Sonify provides a substitute for R's plot function to simplify data analysis for the visually impaired.
Author: Stefan Siegert [aut, cre],
Robin Williams [aut]
Maintainer: Stefan Siegert <s.siegert@exeter.ac.uk>
Diff between sonify versions 0.0-1 dated 2017-02-01 and 0.1-0 dated 2026-10-06
DESCRIPTION | 16 +++++--- MD5 | 10 +++-- NAMESPACE | 1 NEWS.md |only R/sonify.R | 104 ++++++++++++++++++++++++++++++++++++++-------------------- man/sonify.Rd | 50 ++++++++++++++++++--------- tests |only 7 files changed, 118 insertions(+), 63 deletions(-)
Title: Deep Compositional Spatial Models
Description: Deep compositional spatial models are standard spatial covariance
models coupled with an injective warping function of the spatial
domain. The warping function is constructed through a composition
of multiple elemental injective functions in a deep-learning
framework. The package implements two cases for the univariate setting; first,
when these warping functions are known up to some weights that
need to be estimated, and, second, when the weights in each layer are random.
In the multivariate setting only the former case is available.
Estimation and inference is done using `tensorflow`, which makes use of
graphics processing units.
For more details see Zammit-Mangion et al. (2022) <doi:10.1080/01621459.2021.1887741>,
Vu et al. (2022) <doi:10.5705/ss.202020.0156>,
Vu et al. (2023) <doi:10.1016/j.spasta.2023.100742>, and
Shao et al. (2025) <doi:10.48550/arXiv.2505.12548>.
Author: Andrew Zammit-Mangion [aut],
Quan Vu [aut, cre],
Xuanjie Shao [aut]
Maintainer: Quan Vu <quanvustats@gmail.com>
Diff between deepspat versions 0.3.4 dated 2026-09-30 and 0.3.5 dated 2026-10-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ R/predict.deepspat_MSP.R | 18 ++++++++++++++---- 4 files changed, 25 insertions(+), 11 deletions(-)
Title: An R Package to Extend 'ACER ConQuest'
Description: Extends 'ACER ConQuest' through a family of functions
designed to improve graphical outputs and help with advanced analysis
(e.g., differential item functioning). Allows R users to call
'ACER ConQuest' from within R and read 'ACER ConQuest' System Files
(generated by the command `put` <https://conquestmanual.acer.org/s4-00.html#put>).
Requires 'ACER ConQuest' version 5.40 or later.
A demonstration version can be downloaded from <https://shop.acer.org/collections/acer-conquest-5>.
Author: Dan Cloney [aut, cre] ,
Ray Adams [aut]
Maintainer: Dan Cloney <dan.cloney@acer.org>
Diff between conquestr versions 1.5.5 dated 2025-08-23 and 1.8.2 dated 2026-10-06
DESCRIPTION | 12 MD5 | 85 - NAMESPACE | 81 - NEWS.md | 32 R/RcppExports.R | 336 +++++ R/ReadConQuestLibrary.R | 1250 +-------------------- R/ReadConQuestState.R | 63 - R/conquestr.R | 60 - R/conquestrFunc.R | 50 R/generateHelpers.R | 208 +-- R/itanalHelpers.R | 76 - R/plotRout.R | 80 + R/residHelpers.R | 23 R/showHelpers.R | 62 - build/vignette.rds |binary inst/doc/data-cleaning-functions-in-conquestr.html | 4 inst/doc/generateResponses.html | 71 - inst/doc/intro-to-conquestr.Rmd | 2 inst/doc/intro-to-conquestr.html | 8 inst/doc/itanal-in-conquestr.html | 4 inst/doc/plotting.html | 10 inst/doc/responseProbs.html | 10 inst/doc/test_item_review_sheet_markdown.html | 10 inst/extdata/ex1_unident.cqc |only inst/extdata/ex1_unident.dat |only inst/extdata/ex1_unident_xsi.txt |only inst/extdata/mysysfile_unident.cqs |only man/DecompressSys.Rd | 7 man/ReadSys.Rd | 5 man/ReadTermsList.Rd | 6 man/cnvrtItemParam.Rd | 9 man/genResponses.Rd | 2 man/genResponsesCpp.Rd |only man/lcs.Rd |only man/lcs_vec.Rd |only man/plotRout.Rd | 3 man/q3ExpCorrect.Rd | 3 man/replaceInVector.Rd | 4 man/simplepCpp.Rd |only man/steigerStat.Rd | 11 src/RcppExports.cpp | 948 +++++++++++++++ src/generateCq.cpp |only src/readCq.cpp |only src/utilsCq.cpp | 66 + tests/testthat/test-DecompressSys.R |only tests/testthat/test-cqReader.R |only tests/testthat/test-genHelpers.R | 120 ++ tests/testthat/test-getCqItanal.R | 24 tests/testthat/test-getCqRespModel.R |only vignettes/intro-to-conquestr.Rmd | 2 50 files changed, 2140 insertions(+), 1607 deletions(-)
Title: Mining NB-Frequent Itemsets and NB-Precise Rules
Description: NBMiner is an implementation of the model-based mining algorithm for mining NB-frequent itemsets and NB-precise rules. Michael Hahsler (2006) <doi:10.1007/s10618-005-0026-2>.
Author: Michael Hahsler [aut, cre, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arulesNBMiner versions 0.1.9 dated 2025-12-09 and 0.1.10 dated 2026-10-06
DESCRIPTION | 16 +-- MD5 | 29 +++-- NEWS.md | 12 +- R/Agrawal_data.R | 4 R/NBMiner.R | 132 ++++++++++++++++-------- R/NBMinerParameters.R | 176 ++++++++++++++++++++------------- README.md | 87 +++++++++------- build/partial.rdb |binary build/vignette.rds |only inst/doc |only man/Agrawal.Rd | 5 man/NBMiner.Rd | 121 +++++++++++++++------- man/NBMinerParameters.Rd | 94 ++++++++++++----- man/figures/README-NB_estimation-1.png |only tests |only vignettes |only 16 files changed, 439 insertions(+), 237 deletions(-)
Title: Vehicle Routing Problem Solver Built on 'PyVRP'
Description: A 'tidyverse'-style interface to high-performance vehicle routing
problem (VRP) solving. Vendors the C++ core of the 'PyVRP' solver
(<https://github.com/PyVRP/PyVRP>) and rewires it through 'cpp11', with no
'Python' runtime dependency. Supports the capacitated VRP, time windows,
multiple depots, heterogeneous fleets, prize-collecting and multi-trip
variants, driven by an iterated local search metaheuristic.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Julia Nascimento Barreto [aut] ,
Niels Wouda [ctb, cph] ,
Thibaut Vidal [cph] ,
ORTEC [cph]
Maintainer: Andre Leite <leite@castlab.org>
Diff between vrpr versions 0.2.1 dated 2026-09-30 and 0.2.2 dated 2026-10-06
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 7 +++++++ inst/CITATION | 5 +++-- inst/doc/vrpr.html | 2 +- src/vendor/pyvrp/Client.cpp | 1 + src/vendor/pyvrp/VehicleType.cpp | 1 + 7 files changed, 22 insertions(+), 12 deletions(-)
Title: Data and 'Shiny' Application for the Tv Show 'SouthPark'
Description: Ratings, votes, swear words and sentiments are analysed for the show 'SouthPark' through a 'Shiny' application after web scraping from 'IMDB' and the website <https://southpark.fandom.com/wiki/South_Park_Archives>.
Author: Amalan Mahendran [aut, cre]
Maintainer: Amalan Mahendran <amalan0595@gmail.com>
Diff between SouthParkRshiny versions 1.0.0 dated 2024-03-09 and 1.1.1 dated 2026-10-06
SouthParkRshiny-1.0.0/SouthParkRshiny/R/Basic_plots.R |only SouthParkRshiny-1.0.0/SouthParkRshiny/R/N_Grams_plots.R |only SouthParkRshiny-1.0.0/SouthParkRshiny/R/Ratings_Votes_plots.R |only SouthParkRshiny-1.0.0/SouthParkRshiny/R/Sentiment_Four_plots.R |only SouthParkRshiny-1.0.0/SouthParkRshiny/R/Sentiment_General_plots.R |only SouthParkRshiny-1.0.0/SouthParkRshiny/R/Sentiment_Support_plots.R |only SouthParkRshiny-1.0.0/SouthParkRshiny/R/Swear_Words_plots.R |only SouthParkRshiny-1.0.0/SouthParkRshiny/data/Basic_plots.rda |only SouthParkRshiny-1.0.0/SouthParkRshiny/data/N_Grams_plots.rda |only SouthParkRshiny-1.0.0/SouthParkRshiny/data/Ratings_Votes_plots.rda |only SouthParkRshiny-1.0.0/SouthParkRshiny/data/Sentiment_Four_plots.rda |only SouthParkRshiny-1.0.0/SouthParkRshiny/data/Sentiment_General_plots.rda |only SouthParkRshiny-1.0.0/SouthParkRshiny/data/Sentiment_Support_plots.rda |only SouthParkRshiny-1.0.0/SouthParkRshiny/data/Swear_Words_plots.rda |only SouthParkRshiny-1.0.0/SouthParkRshiny/man/Basic_plots.Rd |only SouthParkRshiny-1.0.0/SouthParkRshiny/man/N_Grams_plots.Rd |only SouthParkRshiny-1.0.0/SouthParkRshiny/man/Ratings_Votes_plots.Rd |only SouthParkRshiny-1.0.0/SouthParkRshiny/man/Sentiment_Four_plots.Rd |only SouthParkRshiny-1.0.0/SouthParkRshiny/man/Sentiment_General_plots.Rd |only SouthParkRshiny-1.0.0/SouthParkRshiny/man/Sentiment_Support_plots.Rd |only SouthParkRshiny-1.0.0/SouthParkRshiny/man/Swear_Words_plots.Rd |only SouthParkRshiny-1.1.1/SouthParkRshiny/DESCRIPTION | 25 SouthParkRshiny-1.1.1/SouthParkRshiny/LICENSE | 2 SouthParkRshiny-1.1.1/SouthParkRshiny/MD5 | 88 ++- SouthParkRshiny-1.1.1/SouthParkRshiny/NAMESPACE | 18 SouthParkRshiny-1.1.1/SouthParkRshiny/R/Basic_Plots.R |only SouthParkRshiny-1.1.1/SouthParkRshiny/R/Cooccurrence_Plots.R |only SouthParkRshiny-1.1.1/SouthParkRshiny/R/Friends_Sentiment_Plots.R |only SouthParkRshiny-1.1.1/SouthParkRshiny/R/N_Grams_Plots.R |only SouthParkRshiny-1.1.1/SouthParkRshiny/R/Ratings_Votes_Plots.R |only SouthParkRshiny-1.1.1/SouthParkRshiny/R/Sentiment_General_Plots.R |only SouthParkRshiny-1.1.1/SouthParkRshiny/R/Support_Sentiment_Plots.R |only SouthParkRshiny-1.1.1/SouthParkRshiny/R/Swear_Words_Plots.R |only SouthParkRshiny-1.1.1/SouthParkRshiny/R/Transition_Plots.R |only SouthParkRshiny-1.1.1/SouthParkRshiny/R/app_server.R | 275 +++++++--- SouthParkRshiny-1.1.1/SouthParkRshiny/R/app_ui.R | 103 ++- SouthParkRshiny-1.1.1/SouthParkRshiny/R/run_app.R | 18 SouthParkRshiny-1.1.1/SouthParkRshiny/data/Basic_Plots.rda |only SouthParkRshiny-1.1.1/SouthParkRshiny/data/Cooccurrence_Plots.rda |only SouthParkRshiny-1.1.1/SouthParkRshiny/data/Friends_Sentiment_Plots.rda |only SouthParkRshiny-1.1.1/SouthParkRshiny/data/N_Grams_Plots.rda |only SouthParkRshiny-1.1.1/SouthParkRshiny/data/Ratings_Votes_Plots.rda |only SouthParkRshiny-1.1.1/SouthParkRshiny/data/Sentiment_General_Plots.rda |only SouthParkRshiny-1.1.1/SouthParkRshiny/data/SouthPark_IMDB_Data.rda |binary SouthParkRshiny-1.1.1/SouthParkRshiny/data/SouthPark_Script_Data.rda |binary SouthParkRshiny-1.1.1/SouthParkRshiny/data/Southpark_Summary.rda |binary SouthParkRshiny-1.1.1/SouthParkRshiny/data/Support_Sentiment_Plots.rda |only SouthParkRshiny-1.1.1/SouthParkRshiny/data/Swear_Words_Plots.rda |only SouthParkRshiny-1.1.1/SouthParkRshiny/data/Transition_Plots.rda |only SouthParkRshiny-1.1.1/SouthParkRshiny/inst/Images |only SouthParkRshiny-1.1.1/SouthParkRshiny/inst/app/www/Images |only SouthParkRshiny-1.1.1/SouthParkRshiny/inst/golem-config.yml | 2 SouthParkRshiny-1.1.1/SouthParkRshiny/man/Basic_Plots.Rd |only SouthParkRshiny-1.1.1/SouthParkRshiny/man/Cooccurrence_Plots.Rd |only SouthParkRshiny-1.1.1/SouthParkRshiny/man/Friends_Sentiment_Plots.Rd |only SouthParkRshiny-1.1.1/SouthParkRshiny/man/N_Grams_Plots.Rd |only SouthParkRshiny-1.1.1/SouthParkRshiny/man/Ratings_Votes_Plots.Rd |only SouthParkRshiny-1.1.1/SouthParkRshiny/man/Sentiment_General_Plots.Rd |only SouthParkRshiny-1.1.1/SouthParkRshiny/man/Support_Sentiment_Plots.Rd |only SouthParkRshiny-1.1.1/SouthParkRshiny/man/Swear_Words_Plots.Rd |only SouthParkRshiny-1.1.1/SouthParkRshiny/man/Transition_Plots.Rd |only 61 files changed, 363 insertions(+), 168 deletions(-)
More information about SouthParkRshiny at CRAN
Permanent link
Title: (Standardised) Major Axis Estimation and Testing Routines
Description: Methods for fitting bivariate lines in
allometry using the major axis (MA) or standardised major axis (SMA), and
for making inferences about such lines. The available methods of inference
include confidence intervals and one-sample tests for slope and elevation,
testing for a common slope or elevation amongst several allometric lines,
constructing a confidence interval for a common slope or elevation, and
testing for no shift along a common axis, amongst several samples.
See Warton et al. 2012 <doi:10.1111/j.2041-210X.2011.00153.x> for methods description.
Author: David Warton [aut],
Remko Duursma [aut],
Daniel Falster [aut, cre] ,
Sara Taskinen [aut],
Fonti Kar [aut]
Maintainer: Daniel Falster <daniel.falster@unsw.edu.au>
Diff between smatr versions 3.5-1 dated 2026-07-28 and 3.5-2 dated 2026-10-06
smatr-3.5-1/smatr/man/defineAxis.Rd |only smatr-3.5-1/smatr/man/huber.M.Rd |only smatr-3.5-2/smatr/DESCRIPTION | 6 +-- smatr-3.5-2/smatr/MD5 | 41 ++++++++++++------------ smatr-3.5-2/smatr/NAMESPACE | 9 +++++ smatr-3.5-2/smatr/NEWS.md | 9 +++++ smatr-3.5-2/smatr/R/alpha.fun.R | 30 ++++++++--------- smatr-3.5-2/smatr/R/b.com.est.R | 1 smatr-3.5-2/smatr/R/com.ci.R | 2 - smatr-3.5-2/smatr/R/defineAxis.R | 11 +----- smatr-3.5-2/smatr/R/huber.M.R | 9 +---- smatr-3.5-2/smatr/R/lr.b.com.R | 1 smatr-3.5-2/smatr/R/makeLogMinor.R | 7 +--- smatr-3.5-2/smatr/R/nicePlot.R | 15 +------- smatr-3.5-2/smatr/R/seqLog.R | 5 +- smatr-3.5-2/smatr/R/utils.R | 9 +---- smatr-3.5-2/smatr/README.md | 12 +++++-- smatr-3.5-2/smatr/build/vignette.rds |binary smatr-3.5-2/smatr/man/alpha.fun.Rd | 10 ++++- smatr-3.5-2/smatr/man/com.ci.Rd |only smatr-3.5-2/smatr/man/makeLogMinor.Rd | 6 +-- smatr-3.5-2/smatr/man/plotutils.Rd |only smatr-3.5-2/smatr/man/seqLog.Rd | 4 +- smatr-3.5-2/smatr/tests/testthat/test-exports.R |only 24 files changed, 96 insertions(+), 91 deletions(-)
Title: Profile Analysis via Multidimensional Scaling
Description: Implements Profile Analysis via Multidimensional Scaling (PAMS)
for the identification of population-level core response profiles from
cross-sectional and longitudinal person-score data. Each person profile
is decomposed into a level component (the person mean) and a pattern
component (ipsatized subscores). PAMS uses nonmetric multidimensional
scaling via the SMACOF algorithm to identify a small number of core
profiles that represent the central response patterns in a sample of any
size. Bootstrap standard errors and bias-corrected and accelerated (BCa)
confidence intervals for individual core profile coordinates are
estimated, enabling significance testing of coordinates that is not
available in other profile analysis methods such as cluster profile
analysis or latent profile analysis. Person-level weights, R-squared
values, and partial correlations with core profiles are also estimated, allowing
individual profiles to be interpreted in terms of the core profile
structure. PAMS can be [...truncated...]
Author: Se-Kang Kim [aut, cre] ,
Donghoh Kim [aut]
Maintainer: Se-Kang Kim <sekangandroid@gmail.com>
Diff between pams versions 0.1.0 dated 2026-03-31 and 0.2.0 dated 2026-10-06
.aspell |only DESCRIPTION | 20 - MD5 | 34 + NAMESPACE | 17 NEWS.md |only R/BootSmacof.R | 822 +++++++++++++++++++++++------------------------- R/internal.R |only R/methods.R |only README.md | 53 +-- build/partial.rdb |binary build/vignette.rds |only demo/00Index | 2 demo/PAMS_analysis.R | 526 +++--------------------------- inst/CITATION |only inst/WORDLIST | 1 inst/doc |only man/BootSmacof.Rd | 95 ++--- man/plot.pams_fit.Rd |only man/summary.pams_fit.Rd |only tests |only vignettes |only 21 files changed, 573 insertions(+), 997 deletions(-)
Title: Clustering of Sites with Species Data
Description: Clustering algorithm developed for use with plot inventories of species. It groups plots by subsets of diagnostic species rather than overall species composition. There is an unsupervised and a supervised mode, the latter accepting suggestions for species with greater weight and cluster medoids.
Author: Sebastian Schmidtlein [aut, cre] ,
Jason Collison [aut],
Robin Pfannendoerfer [aut],
Lubomir Tichy [ctb]
Maintainer: Sebastian Schmidtlein <schmidtlein@kit.edu>
Diff between isopam versions 3.6 dated 2026-03-27 and 3.7 dated 2026-10-06
DESCRIPTION | 11 +++-- MD5 | 6 +-- NAMESPACE | 4 +- R/isopam.R | 111 +++++++++++++++++++++++++++++++++++++++++++----------------- 4 files changed, 92 insertions(+), 40 deletions(-)
Title: Mixture Cure Rate Models with Flexible Link Functions via the EM
Algorithm
Description: Fits mixture cure rate models by the Expectation-Maximization (EM)
algorithm. The incidence component (the probability of being uncured)
accepts the logit, probit, cauchit, power logit and reversed power logit
link functions, and the
latency component accepts the exponential, Rayleigh, Weibull, log-normal,
log-logistic and inverse Gaussian distributions. The package provides
parameter estimates with standard errors, simulation of data from the
model, and diagnostic tools based on residuals and simulated envelopes.
The methods build on Berkson and Gage (1952) <doi:10.2307/2281318>,
Dempster, Laird and Rubin (1977) <doi:10.1111/j.2517-6161.1977.tb01600.x>
and Bazán, Torres-Avilés, Suzuki and Louzada (2017) <doi:10.1002/asmb.2215>.
Author: Chaeyeon Yoo [aut],
Dipak K. Dey [aut],
Victor H. Lachos [aut],
Jalmar M. F. Carrasco [aut, cre]
Maintainer: Jalmar M. F. Carrasco <carrasco.jalmar@ufba.br>
Diff between EMGCR versions 0.2.0 dated 2025-11-18 and 0.3.0 dated 2026-10-06
EMGCR-0.2.0/EMGCR/R/liver2.R |only EMGCR-0.2.0/EMGCR/data/liver2.rda |only EMGCR-0.2.0/EMGCR/man/liver2.Rd |only EMGCR-0.3.0/EMGCR/DESCRIPTION | 42 +++- EMGCR-0.3.0/EMGCR/MD5 | 34 +-- EMGCR-0.3.0/EMGCR/NAMESPACE | 2 EMGCR-0.3.0/EMGCR/NEWS.md |only EMGCR-0.3.0/EMGCR/R/liver.R | 28 +-- EMGCR-0.3.0/EMGCR/R/mleMCR.R | 285 +++++++++++++++++++-------------- EMGCR-0.3.0/EMGCR/R/plotMCR.R | 50 ++--- EMGCR-0.3.0/EMGCR/R/qqMCR.R | 14 + EMGCR-0.3.0/EMGCR/R/rMCM.R | 36 ++-- EMGCR-0.3.0/EMGCR/R/residualsMCR.R | 46 +++-- EMGCR-0.3.0/EMGCR/data/liver.rda |binary EMGCR-0.3.0/EMGCR/man/MCRfit.Rd | 46 +++-- EMGCR-0.3.0/EMGCR/man/liver.Rd | 29 +-- EMGCR-0.3.0/EMGCR/man/plot.MCR.Rd | 18 +- EMGCR-0.3.0/EMGCR/man/qqMCR.Rd | 13 + EMGCR-0.3.0/EMGCR/man/rMCM.Rd | 25 +- EMGCR-0.3.0/EMGCR/man/residuals.MCR.Rd | 16 + 20 files changed, 398 insertions(+), 286 deletions(-)
Title: Modelling Compositional Data with Zero Values
Description: Modelling structural zeros in compositional data using a conditional logistic normal model as described by Aitchison (1986), where MLE (Maximum Likelihood Estimation) is performed via the EM (Expectation-Maximization) algorithm. The relevant paper is Alzeley and Tsagris (2026) <doi:10.48550/arXiv.2608.29954>.
Author: Michail Tsagris [aut, cre]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositionalcln versions 1.0 dated 2026-09-22 and 1.1 dated 2026-10-06
DESCRIPTION | 12 +-- MD5 | 42 ++++++++--- NAMESPACE | 11 +- R/boot.clnmle.R |only R/boot.clnreg.R | 152 ++++++++++++++++++++++++++++++++++++---- R/cln.bcr.R |only R/cln.biplot.R |only R/cln.condregs.R |only R/cln.cr.R |only R/cln.james.R |only R/cln.mle.R | 32 ++++---- R/cln.pca.R |only R/cln.reg.R | 122 ++++++++++++++++++++++++++++---- R/cln.regs.R |only R/cln.residplot.R |only R/fbed.cln.R |only man/Compositionalcln-package.Rd | 4 - man/boot.clnmle.Rd |only man/boot.clnreg.Rd | 4 - man/cln.bcr.Rd |only man/cln.biplot.Rd |only man/cln.condregs.Rd |only man/cln.contour.Rd | 7 - man/cln.cr.Rd |only man/cln.james.Rd |only man/cln.mle.Rd | 2 man/cln.pca.Rd |only man/cln.reg.Rd | 9 +- man/cln.regs.Rd |only man/cln.residplot.Rd |only man/fbed.cln.Rd |only man/ternary.Rd | 6 - 32 files changed, 325 insertions(+), 78 deletions(-)
More information about Compositionalcln at CRAN
Permanent link
Title: "Risk Model Regression and Analysis with Complex Non-Linear
Models"
Description: Performs risk analysis using general non-linear models. Risk models can be the sum or product of terms. Each term is the product of exponential/linear functions of covariates. Additionally sub-terms can be defined as a sum of exponential, linear threshold, and step functions. Cox Proportional hazards <https://en.wikipedia.org/wiki/Proportional_hazards_model>, Poisson <https://en.wikipedia.org/wiki/Poisson_regression>, and Fine-Gray competing risks <https://www.publichealth.columbia.edu/research/population-health-methods/competing-risk-analysis> regression are supported. This work was sponsored by NASA Grants 80NSSC19M0161 and 80NSSC23M0129 through a subcontract from the National Council on Radiation Protection and Measurements (NCRP). The computing for this project was performed on the Beocat Research Cluster at Kansas State University, which is funded in part by NSF grants CNS-1006860, EPS-1006860, EPS-0919443, ACI-1440548, CHE-1726332, and NIH P20GM113109.
Author: Eric King-Giunta [aut, cre] ,
Amir Bahadori [ctb] ,
Dan Andresen [ctb] ,
Linda Walsh [ctb] ,
Benjamin French [ctb] ,
Lawrence Dauer [ctb] ,
John Boice Jr [ctb] ,
Kansas State University [cph],
NASA [fnd],
NCRP [fnd],
NRC [fnd]
Maintainer: Eric King-Giunta <egiunta@ksu.edu>
Diff between Colossus versions 1.6.2 dated 2026-09-22 and 1.6.3 dated 2026-10-06
DESCRIPTION | 6 +++--- MD5 | 34 +++++++++++++++++----------------- NEWS.md | 4 ++++ R/plot_types.R | 35 +---------------------------------- inst/WORDLIST | 1 + inst/doc/Alt_Run_Opt.html | 8 ++++---- inst/doc/Logistic.html | 10 +++++----- inst/doc/Matched_Case_Control.html | 6 +++--- inst/doc/Plotting_And_Analysis.html | 2 +- inst/doc/Residual.Rmd | 2 +- inst/doc/Residual.html | 7 ++++--- inst/doc/SMR_Analysis.html | 4 ++-- inst/doc/Starting-Description.html | 4 ++-- inst/doc/Wald_and_Log_Bound.html | 12 ++++++------ src/Grouping.cpp | 9 +++++++++ src/Plot_Extensions.cpp | 9 +++++++++ tests/testthat/test-CoxPlot.R | 7 +++++++ vignettes/Residual.Rmd | 2 +- 18 files changed, 80 insertions(+), 82 deletions(-)
Title: Linear p-Wasserstein Projections
Description: Performs Wasserstein projections from the predictive distributions of any model into the space of predictive distributions of linear models. We utilize L1 penalties to also reduce the complexity of the model space. This package employs the methods as described in Dunipace, Eric and Lorenzo Trippa (2020) <doi:10.48550/arXiv.2012.09999>.
Author: Eric Dunipace [aut, cre] ,
Clemens Schmid [ctb] ,
Espen Bernton [ctb] ,
Mathieu Gerber [ctb] ,
Pierre Jacob [ctb] ,
Bin Dai [ctb] ,
Jared Huling [ctb] ,
Yixuan Qiu [ctb] ,
Dominic Schuhmacher [ctb] ,
Nicolas Bonneel [ctb]
Maintainer: Eric Dunipace <edunipace@mail.harvard.edu>
Diff between WpProj versions 0.2.3 dated 2025-02-05 and 0.3 dated 2026-10-06
DESCRIPTION | 28 - MD5 | 131 ++-- NAMESPACE | 16 NEWS.md | 30 + R/HC.R | 1 R/W1L1.R | 10 R/W2IP.R | 298 ++++++++--- R/W2L1.R | 25 R/WInftyL1.R | 15 R/WPL0.R | 15 R/WPVI.R | 16 R/WP_rsquared.R | 9 R/WPremoveone.R | 2 R/WPsimulatedAnnealing.R | 20 R/WPstepwise.R | 16 R/WpProj-package.R | 3 R/WpProj.R | 39 - R/combine.dist.compare.R | 17 R/distanceCompare.R | 19 R/extractCoefficients.R | 7 R/globals.R |only R/lp_functions.R | 21 R/options.R | 26 R/palette.R |only R/plot_dist.R | 219 +++++--- R/ridgePlot.R | 10 R/utils.R | 81 +++ README.md | 27 - build/partial.rdb |binary inst/WORDLIST | 38 - man/HC.Rd | 1 man/L0_method_options.Rd | 2 man/L1_method_options.Rd | 2 man/W1L1.Rd | 4 man/W2IP.Rd | 13 man/WInfL1.Rd | 4 man/WPL0.Rd | 2 man/WPR2.Rd | 1 man/WPSA.Rd | 2 man/WPSW.Rd | 2 man/WPVI.Rd | 3 man/WpProj-package.Rd | 5 man/WpProj.Rd | 16 man/binary_program_method_options.Rd | 7 man/combine.WPR2.Rd | 1 man/distCompare.Rd | 5 man/figures/README-example_continued_plot_noecho-1.png |binary man/figures/README-r2_plots_noecho-1.png |binary man/figures/README-ridgeplots2_noecho-1.png |binary man/figures/README-ridgeplots_noecho-1.png |binary man/plot-distcompare-method.Rd | 2 man/reexports.Rd | 2 man/ridgePlot.Rd | 5 man/simulated_annealing_method_options.Rd | 2 man/stepwise_method_options.Rd | 2 src/W2penalized.cpp | 2 src/utils.h | 2 tests/testthat/test-W1L1.R | 23 tests/testthat/test-W2IP.R | 143 +++++ tests/testthat/test-W2L1.R | 65 ++ tests/testthat/test-WInftyL1.R | 23 tests/testthat/test-WPL0.R | 58 -- tests/testthat/test-WPL1.R | 26 tests/testthat/test-WPR2.R | 221 +++++--- tests/testthat/test-WpSLIM.R | 447 +++++++++++++---- tests/testthat/test-argument_options.R | 200 +++++-- tests/testthat/test-distanceCompare.R | 193 +++++-- tests/testthat/test-parallel.R |only 68 files changed, 1894 insertions(+), 731 deletions(-)
Title: Infers Novel Immunoglobulin Alleles from Sequencing Data
Description: Infers the V genotype of an individual from immunoglobulin (Ig)
repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of
any novel alleles. This information is then used to correct existing V
allele calls from among the sample sequences.
Citations:
Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>,
Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.
Author: Daniel Gadala-Maria [aut],
Susanna Marquez [aut, cre],
Moriah Cohen [aut],
Ayelet Peres [aut],
Jason Vander Heiden [aut],
Gur Yaari [aut],
Steven Kleinstein [aut, cph]
Maintainer: Susanna Marquez <susanna.marquez@yale.edu>
Diff between tigger versions 1.1.3 dated 2026-04-17 and 1.2.0 dated 2026-10-06
DESCRIPTION | 14 - MD5 | 35 ++-- NAMESPACE | 148 ++++++++++------- NEWS.md | 53 ++++++ R/bayesian.R | 31 +++ R/functions.R | 353 +++++++++++++++++++++++++++++++++++++----- R/tigger.R | 6 README.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Tigger-Vignette.Rmd | 10 - inst/doc/Tigger-Vignette.pdf |binary man/genotypeFasta.Rd | 18 ++ man/inferGenotypeBayesian.Rd | 10 + man/plotGenotype.Rd | 8 man/plotGenotypeConfidence.Rd |only man/reassignAlleles.Rd | 53 ++++++ man/tigger-package.Rd | 6 vignettes/Tigger-Vignette.Rmd | 10 - 19 files changed, 611 insertions(+), 148 deletions(-)
Title: Miscellaneous Functions for Working with 'stars' Rasters
Description: Miscellaneous functions for working with 'stars' objects, mainly single-band rasters. Currently includes functions for: (1) focal filtering, (2) detrending of Digital Elevation Models, (3) calculating flow length, (4) calculating the Convergence Index, (5) calculating topographic aspect and topographic slope.
Author: Michael Dorman [aut, cre]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between starsExtra versions 0.2.8 dated 2024-01-13 and 0.2.9 dated 2026-10-06
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 24 ++++++++++++------------ NEWS.md | 7 ++++++- R/layer_to_matrix.R | 3 +++ build/vignette.rds |binary data/carmel.rda |binary inst/doc/intro.R | 18 +++++++++--------- inst/doc/intro.html | 29 +++++++++++++---------------- inst/tinytest/test-focal2.R | 27 ++++++++++++--------------- inst/tinytest/test-focal2r.R | 23 +++++++++-------------- inst/tinytest/test-layer_values_matrix.R | 16 +++++++++++----- man/starsExtra-package.Rd | 5 +++++ 13 files changed, 85 insertions(+), 77 deletions(-)
Title: Persistence Homology Utilities
Description: A low-level package for hosting persistence data. It is part of the
'TDAverse' suite of packages, which is designed to provide a collection of
packages for enabling machine learning and data science tasks using
persistent homology. Implements a class for hosting persistence data, a
number of coercers from and to already existing and used data structures
from other packages and functions to compute distances between persistence
diagrams. A formal definition and study of bottleneck and Wasserstein
distances can be found in Bubenik, Scott and Stanley (2023)
<doi:10.1007/s41468-022-00103-8>. Their implementation in 'phutil' relies on
the 'C++' Hera library developed by Kerber, Morozov and Nigmetov (2017)
<doi:10.1145/3064175>.
Author: Aymeric Stamm [aut, cre] ,
Jason Cory Brunson [aut] ,
Michael Kerber [ctb] ,
Dmitriy Morozov [ctb] ,
Arnur Nigmetov [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@cnrs.fr>
Diff between phutil versions 0.0.2 dated 2026-04-17 and 0.0.3 dated 2026-10-06
phutil-0.0.2/phutil/src/Makevars |only phutil-0.0.3/phutil/DESCRIPTION | 8 - phutil-0.0.3/phutil/MD5 | 63 +++++----- phutil-0.0.3/phutil/NEWS.md | 10 + phutil-0.0.3/phutil/R/distances.R | 13 +- phutil-0.0.3/phutil/R/persistence-class.R | 2 phutil-0.0.3/phutil/build/partial.rdb |binary phutil-0.0.3/phutil/build/vignette.rds |binary phutil-0.0.3/phutil/cleanup |only phutil-0.0.3/phutil/cleanup.win |only phutil-0.0.3/phutil/configure |only phutil-0.0.3/phutil/configure.win |only phutil-0.0.3/phutil/inst/doc/persistence-class.html | 11 + phutil-0.0.3/phutil/inst/doc/validation-benchmark.html | 13 +- phutil-0.0.3/phutil/inst/tinytest/test-persistence-class.R | 4 phutil-0.0.3/phutil/man/arch_spirals.Rd | 2 phutil-0.0.3/phutil/man/distances.Rd | 13 +- phutil-0.0.3/phutil/man/pairwise-distances.Rd | 2 phutil-0.0.3/phutil/man/persistence_sample.Rd | 2 phutil-0.0.3/phutil/man/phutil-package.Rd | 1 phutil-0.0.3/phutil/man/trefoils.Rd | 2 phutil-0.0.3/phutil/src/Makevars.in |only phutil-0.0.3/phutil/src/README.md |only phutil-0.0.3/phutil/src/hera/bottleneck.h | 2 phutil-0.0.3/phutil/src/hera/bottleneck/basic_defs_bt.h | 2 phutil-0.0.3/phutil/src/hera/bottleneck/bottleneck_detail.h | 2 phutil-0.0.3/phutil/src/hera/bottleneck/def_debug_bt.h | 2 phutil-0.0.3/phutil/src/hera/bottleneck/neighb_oracle.h | 4 phutil-0.0.3/phutil/src/hera/common.h | 12 - phutil-0.0.3/phutil/src/hera/common/diagram_point.h | 7 - phutil-0.0.3/phutil/src/hera/dnn/geometry/euclidean-dynamic.h | 2 phutil-0.0.3/phutil/src/hera/wasserstein/auction_oracle_kdtree_restricted.h | 4 phutil-0.0.3/phutil/src/hera/wasserstein/auction_params.h | 2 phutil-0.0.3/phutil/src/hera/wasserstein/auction_result.h | 2 phutil-0.0.3/phutil/src/hera/wasserstein/basic_defs_ws.h | 4 phutil-0.0.3/phutil/src/hera/wasserstein/def_debug_ws.h | 2 36 files changed, 113 insertions(+), 80 deletions(-)
Title: Limited Memory BFGS Minimizer with Bounds on Parameters with
optim() 'C' Interface
Description: Interfacing to Nocedal et al. L-BFGS-B.3.0
(See <http://users.iems.northwestern.edu/~nocedal/lbfgsb.html>)
limited memory BFGS minimizer with bounds on parameters.
This is a fork of 'lbfgsb3'.
This registers a 'R' compatible 'C' interface to L-BFGS-B.3.0 that uses the same
function types and optimization as the optim() function (see writing 'R' extensions
and source for details). This package also adds more stopping criteria as well
as allowing the adjustment of more tolerances.
Author: Matthew L Fidler [aut, cre] ,
John C Nash [aut],
Ciyou Zhu [aut],
Richard Byrd [aut],
Jorge Nocedal [aut],
Jose Luis Morales [aut]
Maintainer: Matthew L Fidler <matthew.fidler@gmail.com>
Diff between lbfgsb3c versions 2024-3.5 dated 2024-09-17 and 2026-3.5 dated 2026-10-06
lbfgsb3c-2024-3.5/lbfgsb3c/src/timer.f |only lbfgsb3c-2026-3.5/lbfgsb3c/DESCRIPTION | 15 lbfgsb3c-2026-3.5/lbfgsb3c/MD5 | 35 lbfgsb3c-2026-3.5/lbfgsb3c/NEWS.md | 40 lbfgsb3c-2026-3.5/lbfgsb3c/R/RcppExports.R | 8 lbfgsb3c-2026-3.5/lbfgsb3c/R/lbfgsb3.R | 12 lbfgsb3c-2026-3.5/lbfgsb3c/build/vignette.rds |binary lbfgsb3c-2026-3.5/lbfgsb3c/inst/doc/lbfgsb3c.R | 106 - lbfgsb3c-2026-3.5/lbfgsb3c/inst/doc/lbfgsb3c.Rmd | 2 lbfgsb3c-2026-3.5/lbfgsb3c/inst/doc/lbfgsb3c.html | 704 +++++++----- lbfgsb3c-2026-3.5/lbfgsb3c/inst/include/lbfgsb3ptr.h | 18 lbfgsb3c-2026-3.5/lbfgsb3c/man/lbfgsb3c.Rd | 1 lbfgsb3c-2026-3.5/lbfgsb3c/src/Makevars |only lbfgsb3c-2026-3.5/lbfgsb3c/src/Makevars.win |only lbfgsb3c-2026-3.5/lbfgsb3c/src/RcppExports.cpp | 22 lbfgsb3c-2026-3.5/lbfgsb3c/src/init.c | 19 lbfgsb3c-2026-3.5/lbfgsb3c/src/lbfgsb3x.cpp | 309 +---- lbfgsb3c-2026-3.5/lbfgsb3c/src/lbfgsb_cpp.cpp |only lbfgsb3c-2026-3.5/lbfgsb3c/src/lbfgsb_cpp.h |only lbfgsb3c-2026-3.5/lbfgsb3c/src/threadtest.cpp |only lbfgsb3c-2026-3.5/lbfgsb3c/tests/testthat/test-cpp-engine.R |only lbfgsb3c-2026-3.5/lbfgsb3c/vignettes/lbfgsb3c.Rmd | 2 22 files changed, 693 insertions(+), 600 deletions(-)
Title: Generalized Additive Models for Location Scale and Shape
Description: Functions for fitting the Generalized Additive Models for Location Scale and Shape introduced by Rigby and Stasinopoulos (2005), <doi:10.1111/j.1467-9876.2005.00510.x>. The models use a distributional regression approach where all the parameters of the conditional distribution of the response variable are modelled using explanatory variables.
Author: Mikis Stasinopoulos [aut, cre, cph] ,
Robert Rigby [aut] ,
Vlasios Voudouris [ctb],
Calliope Akantziliotou [ctb],
Marco Enea [ctb],
Daniil Kiose [ctb] ,
Achim Zeileis [ctb]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@gre.ac.uk>
Diff between gamlss versions 5.5-0 dated 2025-08-19 and 5.5-5 dated 2026-10-06
gamlss-5.5-0/gamlss/R/FitTail.R |only gamlss-5.5-0/gamlss/R/gamlss_test.R |only gamlss-5.5-5/gamlss/DESCRIPTION | 8 - gamlss-5.5-5/gamlss/MD5 | 41 ++--- gamlss-5.5-5/gamlss/NAMESPACE | 10 + gamlss-5.5-5/gamlss/NEWS.md | 107 +++++++++----- gamlss-5.5-5/gamlss/R/DropAddStepGAIC-Parallel.R | 12 - gamlss-5.5-5/gamlss/R/LR-test-12-06-2013.R | 14 + gamlss-5.5-5/gamlss/R/centilesPLOT.R | 169 +++++++++++------------ gamlss-5.5-5/gamlss/R/chooseDistParallel.R | 2 gamlss-5.5-5/gamlss/R/extra.R | 42 ++++- gamlss-5.5-5/gamlss/R/gamlssML.R | 6 gamlss-5.5-5/gamlss/R/gamlssVGD_23_12_21.R | 2 gamlss-5.5-5/gamlss/R/lms.R | 14 - gamlss-5.5-5/gamlss/R/loglogSurv.R |only gamlss-5.5-5/gamlss/R/pb.R | 114 +++++++++------ gamlss-5.5-5/gamlss/R/pb_goingtozero.R | 39 +++-- gamlss-5.5-5/gamlss/README.md | 6 gamlss-5.5-5/gamlss/build/partial.rdb |binary gamlss-5.5-5/gamlss/man/IC.Rd | 37 ++--- gamlss-5.5-5/gamlss/man/Rsq.Rd | 3 gamlss-5.5-5/gamlss/man/centiles.split.Rd | 4 gamlss-5.5-5/gamlss/man/gamlssVGD.Rd | 4 23 files changed, 374 insertions(+), 260 deletions(-)
Title: An Interface to Brazilian Public Health Data
Description: Retrieves public health data from the Department of Informatics
('DATASUS') of the Brazilian Unified Health System ('Sistema Unico de
Saude', 'SUS') through its online tabulation service and open-data catalog.
It covers the Mortality Information System ('SIM'), Live Birth Information
System ('SINASC'), Hospital Information System of the Unified Health System
('SIH/SUS'), Outpatient Information System of the Unified Health System
('SIA/SUS'), National Register of Health Establishments ('CNES'),
Notifiable Diseases Information System ('SINAN'), National Immunization
Program ('PNI'), Cancer Information System ('SISCAN'), and Food and
Nutrition Surveillance System ('SISVAN'). Contemporary sources from the
'OpenDataSUS' portal include Events Supposedly Attributable to Vaccination
or Immunization ('ESAVI'), influenza-like illness notifications from
'e-SUS Notifica', individual vaccination doses, coronavirus disease 2019
(COVID-19) hospital occupancy, and record-level mortality, live-birth an [...truncated...]
Author: Renato Prado Siqueira [aut, cre]
Maintainer: Renato Prado Siqueira <rpradosiqueira@gmail.com>
Diff between datasus versions 0.16.1 dated 2026-09-05 and 0.16.2 dated 2026-10-06
DESCRIPTION | 6 +- MD5 | 19 ++++--- NEWS.md | 7 ++ R/tabnet-client.R | 25 +++++++++- README.md | 21 +++++++- inst/doc/Introduction_to_datasus.html | 4 - inst/doc/accessing-datasus.html | 4 - inst/doc/geography-and-analysis.html | 73 +++++++++++++----------------- inst/doc/large-files-and-microdata.html | 24 ++++----- inst/doc/modern-surveillance.html | 4 - tests/testthat/test-tabnet-filter-codes.R |only 11 files changed, 112 insertions(+), 75 deletions(-)
Title: Field Planning and Biostatistics Utilities
Description: A toolkit for agricultural trial planning, experimental design,
and applied biostatistics. Supports generating field designs such as Latin
Square, Alpha-Lattice (Patterson and Williams, 1976
<doi:10.2307/2335087>), and Factorial layouts, with automatic fieldbook
creation and layout sketching. Includes a built-in QR Code engine (powered
by the 'Nayuki' C library <https://github.com/nayuki/QR-Code-generator>)
for generating printable plot labels in PDF. Also provides descriptive
statistics utilities for quantitative variables following Field, Miles,
and Field (2012, ISBN:978-1-4462-0045-2).
Author: Tiago Olivoto [aut, cre]
Maintainer: Tiago Olivoto <tiagoolivoto@gmail.com>
Diff between beautils versions 0.2.0 dated 2026-06-24 and 0.3.0 dated 2026-10-06
DESCRIPTION | 31 +++--- MD5 | 78 +++++++++++------ NAMESPACE | 99 ++++++++++++++-------- NEWS.md | 23 +++++ R/beautils-package.R |only R/conf_int.R |only R/design_alpha_lattice.R | 63 ++++++-------- R/design_augmented.R | 20 ++-- R/design_full_factorial.R | 29 +++--- R/design_latin_square.R | 133 +++++++++++++++++++++++------ R/design_prep.R |only R/design_rectangular_lattice.R |only R/design_split_plot.R | 130 ++++++++++++++++++++++------ R/design_square_lattice.R |only R/design_strip_plot.R | 153 ++++++++++++++++++++++++---------- R/design_unifatorial.R | 37 ++++---- R/stats_core.R | 4 R/utils-internal.R | 9 ++ R/utils_etiquetas.R | 29 +++++- R/utils_ttest.R |only R/utils_uuid.R |only build |only inst/COPYRIGHTS |only man/alpha_lattice.Rd | 7 - man/augmented.Rd | 5 - man/beautils-package.Rd |only man/conf_int.Rd |only man/create_label.Rd | 4 man/full_factorial.Rd | 15 +-- man/latin_square.Rd | 19 ++-- man/make_qrcode.Rd | 12 ++ man/prep_design.Rd |only man/rectangular_lattice.Rd |only man/reexports.Rd | 4 man/split_plot.Rd | 22 +++- man/square_lattice.Rd |only man/strip_plot.Rd | 23 +++-- man/t_test.Rd |only man/t_test_paired.Rd |only man/unifatorial.Rd | 13 +- man/utils_sets.Rd | 4 man/uuid_generator.Rd |only src |only tests/testthat/test-conf_int.R |only tests/testthat/test-utils_etiquetas.R | 28 ++++++ tests/testthat/test-utils_planning.R | 2 tests/testthat/test-uuid.R |only 47 files changed, 693 insertions(+), 303 deletions(-)
Title: Mixed Models for Repeated Measures
Description: Mixed models for repeated measures (MMRM) are a popular
choice for analyzing longitudinal continuous outcomes in randomized
clinical trials and beyond; see Cnaan, Laird and Slasor (1997)
<doi:10.1002/(SICI)1097-0258(19971030)16:20%3C2349::AID-SIM667%3E3.0.CO;2-E>
for a tutorial and Mallinckrodt, Lane, Schnell, Peng and Mancuso
(2008) <doi:10.1177/009286150804200402> for a review. This package
implements MMRM based on the marginal linear model without random
effects using Template Model Builder ('TMB') which enables fast and
robust model fitting. Users can specify a variety of covariance
matrices, weight observations, fit models with restricted or standard
maximum likelihood inference, perform hypothesis testing with
Satterthwaite or Kenward-Roger adjustment, and extract least square
means estimates by using 'emmeans'.
Author: Daniel Sabanes Bove [aut, cre] ,
Liming Li [aut] ,
Julia Dedic [aut],
Doug Kelkhoff [aut],
Kevin Kunzmann [aut],
Brian Matthew Lang [aut],
Christian Stock [aut],
Ya Wang [aut],
Craig Gower-Page [ctb],
Dan James [aut],
Jonathan Sidi [aut],
Daniel Leib [...truncated...]
Maintainer: Daniel Sabanes Bove <daniel.sabanes_bove@rconis.com>
Diff between mmrm versions 0.3.18 dated 2026-06-19 and 0.3.19 dated 2026-10-06
DESCRIPTION | 8 MD5 | 89 ++-- NAMESPACE | 38 +- NEWS.md | 13 R/fit.R | 22 - R/interop-emmeans.R | 7 R/kenwardroger.R | 181 ++++++--- R/utils.R | 4 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 32 + inst/doc/algorithm.Rmd | 137 ++++--- inst/doc/algorithm.html | 191 +++++----- inst/doc/introduction.html | 29 + inst/doc/kenward.Rmd | 335 ++++++++++++++---- inst/doc/kenward.html | 446 +++++++++++++++++------- inst/doc/mmrm_review_methods.html | 93 ++--- inst/doc/satterthwaite.Rmd | 197 +++++++--- inst/doc/satterthwaite.html | 286 ++++++++++----- man/h_check_columns_nested.Rd | 2 man/h_check_fits_all_data_same.Rd | 2 man/h_df_1d_kr.Rd | 4 man/h_df_md_kr.Rd | 3 man/h_get_kr_comp.Rd | 17 man/h_kr_df.Rd | 2 man/h_var_adj.Rd | 12 man/h_var_adj_contracted.Rd |only man/mmrm.Rd | 4 src/derivatives.h | 42 +- src/empirical.cpp | 2 src/exports.cpp | 9 src/jacobian.cpp | 2 src/kr_comp.cpp | 145 +++++-- src/kr_comp.h |only src/test-derivatives.cpp | 31 + src/test-kr_comp.cpp |only src/utils.h | 4 tests/testthat/_snaps/kenwardroger.md | 8 tests/testthat/helper-kenwardroger.R |only tests/testthat/test-emmeans.R | 33 + tests/testthat/test-fit.R | 12 tests/testthat/test-kenwardroger.R | 310 ++++++++++++++++ tests/testthat/test-kr-integrated.R |only tests/testthat/test-satterthwaite.R | 20 + vignettes/algorithm.Rmd | 137 ++++--- vignettes/kenward.Rmd | 335 ++++++++++++++---- vignettes/satterthwaite.Rmd | 197 +++++++--- vignettes/subsections/_intro-customizations.Rmd | 16 48 files changed, 2514 insertions(+), 943 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020)
<DOI:10.18637/jss.v092.i01>. Shift-scale (Siegfried et al, 2023, <DOI:10.1080/00031305.2023.2203177>)
and multivariate (Klein et al, 2022, <DOI:10.1111/sjos.12501>) transformation models
are part of this package. A package vignette is available from <DOI:10.32614/CRAN.package.mlt.docreg> and
more convenient user interfaces to many models from <DOI:10.32614/CRAN.package.tram>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.8-2 dated 2026-08-21 and 1.8-3 dated 2026-10-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/R.R | 2 ++ build/partial.rdb |binary inst/NEWS.Rd | 9 +++++++++ 5 files changed, 18 insertions(+), 7 deletions(-)
Title: Make 'PICRUSt2' Output Analysis and Visualization Easier
Description: Provides a convenient way to analyze and visualize 'PICRUSt2' output with pre-defined plots and functions. Allows for generating statistical plots about microbiome functional predictions and offers customization options. Features a one-click option for creating publication-level plots, saving time and effort in producing professional-grade figures. Streamlines the 'PICRUSt2' analysis and visualization process. For more details, see Yang et al. (2023) <doi:10.1093/bioinformatics/btad470>.
Author: Chen Yang [aut, cre],
Liangliang Zhang [aut]
Maintainer: Chen Yang <cafferychen7850@gmail.com>
Diff between ggpicrust2 versions 2.5.17 dated 2026-06-05 and 2.5.19 dated 2026-10-06
DESCRIPTION | 8 MD5 | 187 +- NAMESPACE | 1 NEWS.md | 539 +++++++- R/color_themes.R | 123 + R/compare_daa_results.R | 221 ++- R/compare_gsea_daa.R | 383 ++++- R/compare_metagenome_results.R | 667 ++++++++- R/data_utils.R | 1080 +++++++++++++++- R/ggpicrust2.R | 194 +- R/gsea_pathway_annotation.R | 149 -- R/import_MicrobiomeAnalyst_daa_results.R | 215 ++- R/ko2kegg_abundance.R | 95 + R/legend_annotation_utils.R | 130 + R/pathway_annotation.R | 135 +- R/pathway_daa.R | 1470 +++++++++++++++++----- R/pathway_errorbar.R | 412 +++--- R/pathway_errorbar_table.R | 125 + R/pathway_gsea.R | 1175 +++++++++++++---- R/pathway_heatmap.R | 461 ++++-- R/pathway_pca.R | 294 ++-- R/pathway_ridgeplot.R | 472 ++++--- R/pathway_volcano.R | 64 R/taxa_contribution.R | 452 +++++- R/taxa_contribution_viz.R | 378 ++++- R/visualize_gsea.R | 666 +++++++-- R/zzz.R | 3 README.md | 1389 +++----------------- build/vignette.rds |binary inst/doc/gsea_analysis.R | 103 - inst/doc/gsea_analysis.Rmd | 240 ++- inst/doc/gsea_analysis.html | 612 ++++----- inst/doc/using_ggpicrust2.R | 135 +- inst/doc/using_ggpicrust2.Rmd | 239 ++- inst/doc/using_ggpicrust2.html | 390 +++-- man/aggregate_taxa_contributions.Rd | 36 man/calculate_rank_metric.Rd | 20 man/compare_daa_results.Rd | 24 man/compare_gsea_daa.Rd | 46 man/compare_metagenome_results.Rd | 83 + man/compute_correlation_distance.Rd |only man/create_gradient_colors.Rd | 4 man/create_heatmap_plot.Rd | 7 man/create_network_plot.Rd | 3 man/dot-as_color_vector.Rd | 6 man/filter_gene_sets_to_ranked_universe.Rd |only man/get_color_theme.Rd | 7 man/ggpicrust2.Rd | 113 - man/gsea_pathway_annotation.Rd | 5 man/import_MicrobiomeAnalyst_daa_results.Rd | 27 man/ko2kegg_abundance.Rd | 39 man/ko_to_go_reference.Rd | 6 man/pathway_annotation.Rd | 45 man/pathway_daa.Rd | 78 + man/pathway_errorbar.Rd | 186 +- man/pathway_errorbar_table.Rd | 38 man/pathway_gsea.Rd | 122 + man/pathway_heatmap.Rd | 58 man/pathway_pca.Rd | 27 man/pathway_ridgeplot.Rd | 25 man/pathway_volcano.Rd | 10 man/prepare_gene_sets.Rd | 5 man/read_contrib_file.Rd | 10 man/read_strat_file.Rd | 2 man/resolve_limma_contrast.Rd |only man/run_fgsea.Rd | 14 man/run_limma_gsea.Rd | 9 man/safe_extract.Rd | 4 man/smart_color_selection.Rd | 3 man/taxa_contribution_bar.Rd | 26 man/taxa_contribution_heatmap.Rd | 21 man/visualize_gsea.Rd | 60 tests/testthat/test-color-themes.R |only tests/testthat/test-compare_gsea_daa.R |only tests/testthat/test-compare_metagenome_results.R | 365 +++++ tests/testthat/test-core-audit-followup.R | 199 ++ tests/testthat/test-data_utils.R | 134 ++ tests/testthat/test-find_sample_column.R | 30 tests/testthat/test-first-principles-fixes.R | 347 +++++ tests/testthat/test-ggpicrust2-return-structure.R | 257 +++ tests/testthat/test-go_pathway_support.R | 1 tests/testthat/test-gsea-transformation.R |only tests/testthat/test-gsea_pathway_annotation.R | 52 tests/testthat/test-ko2kegg_abundance.R | 97 + tests/testthat/test-legend_annotation_utils.R |only tests/testthat/test-pathway_annotation.R | 164 ++ tests/testthat/test-pathway_daa.R | 1291 ++++++++++++++++++- tests/testthat/test-pathway_errorbar.R | 284 ++++ tests/testthat/test-pathway_errorbar_table.R | 221 +++ tests/testthat/test-pathway_gsea.R | 945 ++++++++++++++ tests/testthat/test-pathway_heatmap.R | 352 +++++ tests/testthat/test-pathway_pca.R | 219 +++ tests/testthat/test-pathway_ridgeplot.R | 395 +++++ tests/testthat/test-pathway_volcano.R | 110 + tests/testthat/test-taxa_contribution.R | 692 ++++++++++ tests/testthat/test-visualize_gsea.R | 525 +++++++ vignettes/gsea_analysis.Rmd | 240 ++- vignettes/using_ggpicrust2.Rmd | 239 ++- 98 files changed, 16920 insertions(+), 4615 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-27 0.1.0