Title: Parse Front Matter from Documents
Description: Extracts and parses structured metadata ('YAML' or 'TOML')
from the beginning of text documents. Front matter is a common pattern
in 'Quarto' documents, 'R Markdown' documents, static site generators,
documentation systems, content management tools and even 'Python' and
'R' scripts where metadata is placed at the top of a document,
separated from the main content by delimiter fences.
Author: Garrick Aden-Buie [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Garrick Aden-Buie <garrick@posit.co>
Diff between frontmatter versions 0.1.0 dated 2026-01-14 and 0.2.0 dated 2026-02-09
frontmatter-0.1.0/frontmatter/R/default_parsers.R |only frontmatter-0.1.0/frontmatter/tests/testthat/test-default_parsers.R |only frontmatter-0.2.0/frontmatter/DESCRIPTION | 7 frontmatter-0.2.0/frontmatter/MD5 | 27 - frontmatter-0.2.0/frontmatter/NAMESPACE | 3 frontmatter-0.2.0/frontmatter/NEWS.md | 8 frontmatter-0.2.0/frontmatter/R/formats.R |only frontmatter-0.2.0/frontmatter/R/parse_front_matter.R | 46 ++ frontmatter-0.2.0/frontmatter/R/write_front_matter.R |only frontmatter-0.2.0/frontmatter/README.md | 106 +++++ frontmatter-0.2.0/frontmatter/man/format_front_matter.Rd |only frontmatter-0.2.0/frontmatter/src/extract_front_matter.cpp | 97 +++-- frontmatter-0.2.0/frontmatter/tests/testthat/_snaps |only frontmatter-0.2.0/frontmatter/tests/testthat/test-comment-formats.R | 6 frontmatter-0.2.0/frontmatter/tests/testthat/test-formats.R |only frontmatter-0.2.0/frontmatter/tests/testthat/test-parse_front_matter.R | 181 +++++++++- frontmatter-0.2.0/frontmatter/tests/testthat/test-whitespace.R | 6 frontmatter-0.2.0/frontmatter/tests/testthat/test-write_front_matter.R |only 18 files changed, 430 insertions(+), 57 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to several United States Census Bureau
APIs (<https://www.census.gov/data/developers/data-sets.html>) and the US Census Bureau's
geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for mapping
and spatial analysis.
Author: Kyle Walker [aut, cre],
Matt Herman [aut],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between tidycensus versions 1.7.3 dated 2025-07-24 and 1.7.5 dated 2026-02-09
DESCRIPTION | 20 +++++++++--------- MD5 | 14 ++++++------- R/acs.R | 2 - R/estimates.R | 54 +++++++++++++++++++++++++-------------------------- R/flows.R | 2 - R/moe.R | 6 ++--- man/get_acs.Rd | 2 - man/get_estimates.Rd | 2 - 8 files changed, 51 insertions(+), 51 deletions(-)
Title: Visualise OMOP Results using 'shiny' Applications
Description: Visualise results obtained from analysing data mapped to the
Observational Medical Outcomes Partnership (OMOP) common data model using
'shiny' applications.
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Edward Burn [ctb] ,
Nuria Mercade-Besora [ctb] ,
Elin Rowlands [ctb] ,
Cecilia Campanile [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between OmopViewer versions 0.6.0 dated 2025-12-10 and 0.7.0 dated 2026-02-09
OmopViewer-0.6.0/OmopViewer/inst/brand/complement |only OmopViewer-0.6.0/OmopViewer/inst/brand/scarlet.yml |only OmopViewer-0.7.0/OmopViewer/DESCRIPTION | 19 OmopViewer-0.7.0/OmopViewer/MD5 | 131 OmopViewer-0.7.0/OmopViewer/NAMESPACE | 28 OmopViewer-0.7.0/OmopViewer/NEWS.md | 59 OmopViewer-0.7.0/OmopViewer/R/about.R | 50 OmopViewer-0.7.0/OmopViewer/R/appDynamic.R | 594 +-- OmopViewer-0.7.0/OmopViewer/R/appStatic.R | 737 ++-- OmopViewer-0.7.0/OmopViewer/R/background.R | 112 OmopViewer-0.7.0/OmopViewer/R/buttons.R | 252 - OmopViewer-0.7.0/OmopViewer/R/classes.R | 186 - OmopViewer-0.7.0/OmopViewer/R/createServer.R | 363 +- OmopViewer-0.7.0/OmopViewer/R/createUi.R | 416 +- OmopViewer-0.7.0/OmopViewer/R/data.R | 34 OmopViewer-0.7.0/OmopViewer/R/defaultPanels.R | 245 - OmopViewer-0.7.0/OmopViewer/R/functions.R | 857 ++-- OmopViewer-0.7.0/OmopViewer/R/omopViewer-package.R | 22 OmopViewer-0.7.0/OmopViewer/R/populatePanelDetailsOptions.R | 600 +-- OmopViewer-0.7.0/OmopViewer/R/readme.R |only OmopViewer-0.7.0/OmopViewer/R/report.R | 317 - OmopViewer-0.7.0/OmopViewer/R/styleCode.R | 20 OmopViewer-0.7.0/OmopViewer/R/summary.R | 38 OmopViewer-0.7.0/OmopViewer/R/sysdata.rda |binary OmopViewer-0.7.0/OmopViewer/R/theme.R | 148 OmopViewer-0.7.0/OmopViewer/R/utilities.R | 98 OmopViewer-0.7.0/OmopViewer/README.md | 249 - OmopViewer-0.7.0/OmopViewer/build/vignette.rds |binary OmopViewer-0.7.0/OmopViewer/data/omopViewerPanels.rda |binary OmopViewer-0.7.0/OmopViewer/data/omopViewerResults.rda |binary OmopViewer-0.7.0/OmopViewer/inst/brand/ohdsi.yml | 35 OmopViewer-0.7.0/OmopViewer/inst/brand/sad_robot.yml | 25 OmopViewer-0.7.0/OmopViewer/inst/doc/dynamic_app.R | 24 OmopViewer-0.7.0/OmopViewer/inst/doc/dynamic_app.Rmd | 66 OmopViewer-0.7.0/OmopViewer/inst/doc/dynamic_app.html | 759 ++-- OmopViewer-0.7.0/OmopViewer/inst/doc/edit_static_content.R | 116 OmopViewer-0.7.0/OmopViewer/inst/doc/edit_static_content.Rmd | 220 - OmopViewer-0.7.0/OmopViewer/inst/doc/edit_static_content.html | 906 ++--- OmopViewer-0.7.0/OmopViewer/inst/doc/export_static_app.R | 104 OmopViewer-0.7.0/OmopViewer/inst/doc/export_static_app.Rmd | 270 - OmopViewer-0.7.0/OmopViewer/inst/doc/export_static_app.html | 1637 ++++----- OmopViewer-0.7.0/OmopViewer/inst/functions.R | 857 ++-- OmopViewer-0.7.0/OmopViewer/inst/logos/ohdsi_logo.svg | 1784 +++++----- OmopViewer-0.7.0/OmopViewer/man/OmopViewer-package.Rd | 71 OmopViewer-0.7.0/OmopViewer/man/defaultPanels.Rd | 38 OmopViewer-0.7.0/OmopViewer/man/exportStaticApp.Rd | 156 OmopViewer-0.7.0/OmopViewer/man/figures/lifecycle-deprecated.svg | 42 OmopViewer-0.7.0/OmopViewer/man/figures/lifecycle-experimental.svg | 42 OmopViewer-0.7.0/OmopViewer/man/figures/lifecycle-stable.svg | 58 OmopViewer-0.7.0/OmopViewer/man/figures/lifecycle-superseded.svg | 42 OmopViewer-0.7.0/OmopViewer/man/getPanel.Rd | 46 OmopViewer-0.7.0/OmopViewer/man/launchDynamicApp.Rd | 28 OmopViewer-0.7.0/OmopViewer/man/omopViewerPanels.Rd | 40 OmopViewer-0.7.0/OmopViewer/man/omopViewerResults.Rd | 40 OmopViewer-0.7.0/OmopViewer/man/omopViewerThemes.Rd | 40 OmopViewer-0.7.0/OmopViewer/man/panelDetailsFromResult.Rd | 51 OmopViewer-0.7.0/OmopViewer/tests/testthat.R | 24 OmopViewer-0.7.0/OmopViewer/tests/testthat/_snaps/appStatic.md | 14 OmopViewer-0.7.0/OmopViewer/tests/testthat/test-appStatic.R | 453 +- OmopViewer-0.7.0/OmopViewer/tests/testthat/test-background.R | 108 OmopViewer-0.7.0/OmopViewer/tests/testthat/test-choices.R | 336 - OmopViewer-0.7.0/OmopViewer/tests/testthat/test-functions.R | 30 OmopViewer-0.7.0/OmopViewer/tests/testthat/test-packagesSupported.R | 14 OmopViewer-0.7.0/OmopViewer/tests/testthat/test-readme.R |only OmopViewer-0.7.0/OmopViewer/tests/testthat/test-summary.R | 380 +- OmopViewer-0.7.0/OmopViewer/vignettes/dynamic_app.Rmd | 66 OmopViewer-0.7.0/OmopViewer/vignettes/edit_static_content.Rmd | 220 - OmopViewer-0.7.0/OmopViewer/vignettes/export_static_app.Rmd | 270 - 68 files changed, 7575 insertions(+), 7412 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre] ,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between targets versions 1.11.4 dated 2025-09-13 and 1.12.0 dated 2026-02-09
targets-1.11.4/targets/tests/interactive/_targets.R |only targets-1.11.4/targets/tests/interactive/_targets_r |only targets-1.11.4/targets/tests/testthat/_targets |only targets-1.11.4/targets/tests/testthat/_targets.R |only targets-1.12.0/targets/DESCRIPTION | 6 targets-1.12.0/targets/LICENSE | 2 targets-1.12.0/targets/MD5 | 223 ++++------ targets-1.12.0/targets/NAMESPACE | 3 targets-1.12.0/targets/NEWS.md | 13 targets-1.12.0/targets/R/class_active.R | 1 targets-1.12.0/targets/R/class_builder.R | 3 targets-1.12.0/targets/R/class_clustermq.R | 7 targets-1.12.0/targets/R/class_cue.R | 3 targets-1.12.0/targets/R/class_junction.R | 2 targets-1.12.0/targets/R/class_meta.R | 2 targets-1.12.0/targets/R/class_network.R | 34 - targets-1.12.0/targets/R/class_passive.R | 1 targets-1.12.0/targets/R/class_pipeline.R | 4 targets-1.12.0/targets/R/class_runtime.R | 6 targets-1.12.0/targets/R/class_target.R | 2 targets-1.12.0/targets/R/class_vector.R | 4 targets-1.12.0/targets/R/class_visnetwork.R | 1 targets-1.12.0/targets/R/tar_active.R | 2 targets-1.12.0/targets/R/tar_bind.R | 2 targets-1.12.0/targets/R/tar_definition.R | 6 targets-1.12.0/targets/R/tar_delete.R | 2 targets-1.12.0/targets/R/tar_destroy.R | 2 targets-1.12.0/targets/R/tar_envvars.R | 5 targets-1.12.0/targets/R/tar_igraph.R |only targets-1.12.0/targets/R/tar_load.R | 3 targets-1.12.0/targets/R/tar_load_everything.R | 2 targets-1.12.0/targets/R/tar_manifest.R | 6 targets-1.12.0/targets/R/tar_network.R | 27 - targets-1.12.0/targets/R/tar_option_unset.R |only targets-1.12.0/targets/R/tar_package.R | 2 targets-1.12.0/targets/R/tar_path_target.R | 70 +-- targets-1.12.0/targets/R/tar_pipeline.R | 2 targets-1.12.0/targets/R/tar_repository_cas.R | 6 targets-1.12.0/targets/R/tar_resources_aws.R | 2 targets-1.12.0/targets/R/tar_script.R | 3 targets-1.12.0/targets/R/tar_target.R | 15 targets-1.12.0/targets/R/utils_assert.R | 24 - targets-1.12.0/targets/R/utils_aws.R | 6 targets-1.12.0/targets/R/utils_callr.R | 6 targets-1.12.0/targets/R/utils_data.R | 7 targets-1.12.0/targets/R/utils_language.R | 9 targets-1.12.0/targets/build/partial.rdb |binary targets-1.12.0/targets/build/vignette.rds |binary targets-1.12.0/targets/inst/templates/github_actions.yaml | 25 - targets-1.12.0/targets/man/tar_bind.Rd | 2 targets-1.12.0/targets/man/tar_config_get.Rd | 1 targets-1.12.0/targets/man/tar_config_projects.Rd | 1 targets-1.12.0/targets/man/tar_config_set.Rd | 1 targets-1.12.0/targets/man/tar_config_unset.Rd | 1 targets-1.12.0/targets/man/tar_config_yaml.Rd | 1 targets-1.12.0/targets/man/tar_definition.Rd | 15 targets-1.12.0/targets/man/tar_delete.Rd | 2 targets-1.12.0/targets/man/tar_deps.Rd | 1 targets-1.12.0/targets/man/tar_destroy.Rd | 4 targets-1.12.0/targets/man/tar_envvars.Rd | 8 targets-1.12.0/targets/man/tar_glimpse.Rd | 22 targets-1.12.0/targets/man/tar_igraph.Rd |only targets-1.12.0/targets/man/tar_language.Rd | 6 targets-1.12.0/targets/man/tar_manifest.Rd | 1 targets-1.12.0/targets/man/tar_mermaid.Rd | 22 targets-1.12.0/targets/man/tar_network.Rd | 28 - targets-1.12.0/targets/man/tar_option_get.Rd | 1 targets-1.12.0/targets/man/tar_option_reset.Rd | 1 targets-1.12.0/targets/man/tar_option_set.Rd | 3 targets-1.12.0/targets/man/tar_option_unset.Rd |only targets-1.12.0/targets/man/tar_option_with.Rd | 3 targets-1.12.0/targets/man/tar_outdated.Rd | 1 targets-1.12.0/targets/man/tar_path_target.Rd | 52 +- targets-1.12.0/targets/man/tar_pipeline.Rd | 2 targets-1.12.0/targets/man/tar_prune.Rd | 2 targets-1.12.0/targets/man/tar_repository_cas.Rd | 6 targets-1.12.0/targets/man/tar_repository_cas_local.Rd | 4 targets-1.12.0/targets/man/tar_repository_cas_local_gc.Rd | 4 targets-1.12.0/targets/man/tar_resources_aws.Rd | 2 targets-1.12.0/targets/man/tar_resources_gcp.Rd | 2 targets-1.12.0/targets/man/tar_script.Rd | 3 targets-1.12.0/targets/man/tar_sitrep.Rd | 1 targets-1.12.0/targets/man/tar_target.Rd | 15 targets-1.12.0/targets/man/tar_validate.Rd | 1 targets-1.12.0/targets/man/tar_visnetwork.Rd | 22 targets-1.12.0/targets/man/target_run_worker.Rd | 2 targets-1.12.0/targets/tests/hpc/test-clustermq_local.R | 12 targets-1.12.0/targets/tests/hpc/test-clustermq_sge.R | 30 - targets-1.12.0/targets/tests/hpc/test-crew_local.R | 8 targets-1.12.0/targets/tests/hpc/test-future_local.R | 8 targets-1.12.0/targets/tests/hpc/test-retrieval.R | 4 targets-1.12.0/targets/tests/performance/test-memory.R | 8 targets-1.12.0/targets/tests/testthat/helper-utils.R | 11 targets-1.12.0/targets/tests/testthat/test-class_balanced.R |only targets-1.12.0/targets/tests/testthat/test-class_builder.R | 19 targets-1.12.0/targets/tests/testthat/test-class_clustermq.R | 73 ++- targets-1.12.0/targets/tests/testthat/test-class_crew.R | 40 - targets-1.12.0/targets/tests/testthat/test-class_options.R | 8 targets-1.12.0/targets/tests/testthat/test-class_parallel.R | 21 targets-1.12.0/targets/tests/testthat/test-class_runtime.R | 8 targets-1.12.0/targets/tests/testthat/test-class_terse.R | 2 targets-1.12.0/targets/tests/testthat/test-class_torch.R | 16 targets-1.12.0/targets/tests/testthat/test-class_vector.R | 4 targets-1.12.0/targets/tests/testthat/test-tar_envvars.R | 3 targets-1.12.0/targets/tests/testthat/test-tar_format.R | 2 targets-1.12.0/targets/tests/testthat/test-tar_igraph.R |only targets-1.12.0/targets/tests/testthat/test-tar_load.R | 7 targets-1.12.0/targets/tests/testthat/test-tar_make.R | 8 targets-1.12.0/targets/tests/testthat/test-tar_make_clustermq.R | 14 targets-1.12.0/targets/tests/testthat/test-tar_option_set.R | 4 targets-1.12.0/targets/tests/testthat/test-tar_option_unset.R |only targets-1.12.0/targets/tests/testthat/test-tar_path_target.R | 20 targets-1.12.0/targets/tests/testthat/test-tar_repository_cas.R | 4 113 files changed, 653 insertions(+), 475 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative pipelines for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible pipelines concisely and compactly.
The methods in this package were influenced by the 'targets' R package.
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre] ,
Rudolf Siegel [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph, fnd]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between tarchetypes versions 0.13.2 dated 2025-09-13 and 0.14.0 dated 2026-02-09
DESCRIPTION | 11 +- MD5 | 182 +++++++++++++++++------------------ NAMESPACE | 1 NEWS.md | 10 + R/tar_age.R | 15 ++ R/tar_assign.R | 6 - R/tar_change.R | 7 - R/tar_combine.R | 9 - R/tar_download.R | 7 - R/tar_eval.R | 8 - R/tar_file_read.R | 6 - R/tar_files.R | 4 R/tar_files_input.R | 4 R/tar_force.R | 4 R/tar_formats.R | 8 - R/tar_group_by.R | 6 - R/tar_group_count.R | 6 - R/tar_group_select.R | 6 - R/tar_group_size.R | 6 - R/tar_hook_before.R | 11 +- R/tar_hook_inner.R | 7 - R/tar_hook_outer.R | 7 - R/tar_knit.R | 4 R/tar_map.R | 24 ++-- R/tar_map2.R | 6 - R/tar_map2_count.R | 6 - R/tar_map2_size.R | 6 - R/tar_map_rep.R | 6 - R/tar_plan.R | 18 ++- R/tar_quarto.R | 6 - R/tar_quarto_rep.R | 6 - R/tar_quarto_rep_raw.R | 17 +++ R/tar_render.R | 23 +++- R/tar_render_rep.R | 6 - R/tar_rep.R | 2 R/tar_rep2.R | 6 - R/tar_rep_map.R | 6 - R/tar_rep_map_raw.R | 6 - R/tar_select_names.R | 6 - R/tar_select_targets.R | 14 +- R/tar_skip.R | 8 - R/tar_sub.R | 6 - R/tar_tangle.R |only inst/WORDLIST | 4 inst/example_tar_tangle.qmd |only man/tar_age.Rd | 28 +++-- man/tar_assign.Rd | 22 ++-- man/tar_change.Rd | 19 ++- man/tar_combine.Rd | 21 ++-- man/tar_cue_age.Rd | 11 +- man/tar_download.Rd | 19 ++- man/tar_eval.Rd | 20 ++- man/tar_file_read.Rd | 18 +-- man/tar_files.Rd | 16 +-- man/tar_files_input.Rd | 16 +-- man/tar_force.Rd | 16 +-- man/tar_formats.Rd | 16 +-- man/tar_formats_superseded.Rd | 16 +-- man/tar_group_by.Rd | 18 +-- man/tar_group_count.Rd | 18 +-- man/tar_group_select.Rd | 18 +-- man/tar_group_size.Rd | 18 +-- man/tar_hook_before.Rd | 23 ++-- man/tar_hook_inner.Rd | 23 ++-- man/tar_hook_outer.Rd | 23 ++-- man/tar_knit.Rd | 16 +-- man/tar_map.Rd | 24 ++-- man/tar_map2.Rd | 18 +-- man/tar_map2_count.Rd | 18 +-- man/tar_map2_size.Rd | 18 +-- man/tar_map_rep.Rd | 18 +-- man/tar_plan.Rd | 31 +++-- man/tar_quarto.Rd | 18 +-- man/tar_quarto_rep.Rd | 18 +-- man/tar_render.Rd | 37 +++++-- man/tar_render_rep.Rd | 18 +-- man/tar_rep.Rd | 14 +- man/tar_rep2.Rd | 18 +-- man/tar_rep_map.Rd | 18 +-- man/tar_rep_map_raw.Rd | 18 +-- man/tar_select_names.Rd | 18 +-- man/tar_select_targets.Rd | 26 ++--- man/tar_skip.Rd | 20 ++- man/tar_sub.Rd | 18 +-- man/tar_tangle.Rd |only tests/testthat/test-tar_map2.R | 84 ++++++++-------- tests/testthat/test-tar_map2_count.R | 42 ++++---- tests/testthat/test-tar_map2_size.R | 42 ++++---- tests/testthat/test-tar_map_rep.R | 136 +++++++++++++------------- tests/testthat/test-tar_quarto.R | 2 tests/testthat/test-tar_quarto_rep.R | 1 tests/testthat/test-tar_rep2.R | 38 +++---- tests/testthat/test-tar_rep_map.R | 38 +++---- tests/testthat/test-tar_tangle.R |only 94 files changed, 927 insertions(+), 736 deletions(-)
Title: Non-Longitudinal Bayesian Historical Borrowing Models
Description: Historical borrowing in clinical trials can improve
precision and operating characteristics. This package supports
a hierarchical model and a mixture model to borrow historical
control data from other studies to better characterize the
control response of the current study. It also quantifies
the amount of borrowing through benchmark models (independent
and pooled). Some of the methods are discussed by
Viele et al. (2013) <doi:10.1002/pst.1589>.
Author: William Michael Landau [aut, cre] ,
Albert Man [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between historicalborrow versions 1.1.0 dated 2024-09-10 and 1.1.1 dated 2026-02-09
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- build/vignette.rds |binary inst/doc/methods.Rmd | 4 ++-- inst/doc/methods.html | 24 +++++++++++++----------- inst/doc/usage.html | 12 ++++++------ tests/testthat/test-hb_ess.R | 12 ++++++------ vignettes/bibliography.bib | 12 ++++++------ vignettes/methods.Rmd | 4 ++-- 9 files changed, 48 insertions(+), 46 deletions(-)
More information about historicalborrow at CRAN
Permanent link
Title: Box-Cox Symmetric Regression for Non-Negative Data
Description: A collection of tools for regression analysis of non-negative data,
including strictly positive and zero-inflated observations, based on the class of the Box-Cox
symmetric (BCS) distributions and its zero-adjusted extension. The BCS distributions are a
class of flexible probability models capable of describing different levels of skewness and
tail-heaviness. The package offers a comprehensive regression modeling framework, including
estimation and tools for evaluating goodness-of-fit.
Author: Felipe Queiroz [aut] ,
Rodrigo Medeiros [aut, cre, cph]
Maintainer: Rodrigo Medeiros <rodrigo.matheus@ufrn.br>
Diff between BCSreg versions 1.1.0 dated 2026-01-12 and 1.1.1 dated 2026-02-09
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 3 +++ tests/testthat/test-bcno.R | 26 +++++++++++++------------- 4 files changed, 22 insertions(+), 19 deletions(-)
Title: Three-Way Component Analysis
Description: Component analysis for three-way data arrays by means of Candecomp/Parafac, Tucker3, Tucker2 and Tucker1 models.
Author: Maria Antonietta Del Ferraro [aut],
Paolo Giordani [aut, cre],
Henk A.L. Kiers [aut]
Maintainer: Paolo Giordani <paolo.giordani@uniroma1.it>
Diff between ThreeWay versions 1.1.3 dated 2015-09-07 and 1.1.4 dated 2026-02-09
DESCRIPTION | 28 +++++++++++++++++++++------- MD5 | 32 ++++++++++++++++---------------- inst/CITATION | 19 +++++++------------ man/CP.Rd | 2 +- man/CPdimensionalityplot.Rd | 6 +++--- man/Kinship.Rd | 4 ++-- man/T1.Rd | 2 +- man/T2.Rd | 2 +- man/T2func.Rd | 4 ++-- man/T2funcrep.Rd | 4 ++-- man/T3.Rd | 2 +- man/T3dimensionalityplot.Rd | 6 +++--- man/T3func.Rd | 6 +++--- man/T3funcrep.Rd | 6 +++--- man/TV.Rd | 10 +++++----- man/pcamean.Rd | 2 +- man/threewayanova.Rd | 2 +- 17 files changed, 73 insertions(+), 64 deletions(-)
Title: Stable Isotope Bayesian Ellipses in R
Description: Fits bi-variate ellipses to stable isotope data using Bayesian
inference with the aim being to describe and compare their isotopic
niche.
Author: Andrew Jackson [aut, cre] ,
Andrew Parnell [aut]
Maintainer: Andrew Jackson <jacksoan@tcd.ie>
Diff between SIBER versions 2.1.9 dated 2023-10-19 and 2.1.10 dated 2026-02-09
SIBER-2.1.10/SIBER/DESCRIPTION | 19 +- SIBER-2.1.10/SIBER/MD5 | 46 ++--- SIBER-2.1.10/SIBER/NAMESPACE | 4 SIBER-2.1.10/SIBER/NEWS.md | 3 SIBER-2.1.10/SIBER/R/createSiberObject.R | 2 SIBER-2.1.10/SIBER/build/partial.rdb |binary SIBER-2.1.10/SIBER/build/vignette.rds |binary SIBER-2.1.10/SIBER/inst/doc/Centroid-Vectors.html | 9 - SIBER-2.1.10/SIBER/inst/doc/Customising-Plots-Manually.html | 7 SIBER-2.1.10/SIBER/inst/doc/Ellipse-Overlap.html | 9 - SIBER-2.1.10/SIBER/inst/doc/Introduction-to-SIBER.html | 19 +- SIBER-2.1.10/SIBER/inst/doc/Plot-SIA-ggplot2.html | 71 ++++---- SIBER-2.1.10/SIBER/inst/doc/Plot-posterior-ellipses.R | 6 SIBER-2.1.10/SIBER/inst/doc/Plot-posterior-ellipses.Rmd | 6 SIBER-2.1.10/SIBER/inst/doc/Plot-posterior-ellipses.html | 13 - SIBER-2.1.10/SIBER/inst/doc/Points-Inside-Outside-Ellipse.html | 11 - SIBER-2.1.10/SIBER/inst/doc/Test-convergence.html | 19 +- SIBER-2.1.10/SIBER/inst/doc/siber-comparing-communities.html | 15 - SIBER-2.1.10/SIBER/inst/doc/siber-comparing-populations.html | 85 +++++----- SIBER-2.1.10/SIBER/vignettes/Plot-posterior-ellipses.Rmd | 6 SIBER-2.1.9/SIBER/R/kapow.R |only SIBER-2.1.9/SIBER/R/siberKapow.R |only SIBER-2.1.9/SIBER/inst/doc/kapow-example.R |only SIBER-2.1.9/SIBER/inst/doc/kapow-example.Rmd |only SIBER-2.1.9/SIBER/inst/doc/kapow-example.html |only SIBER-2.1.9/SIBER/man/kapow.Rd |only SIBER-2.1.9/SIBER/man/siberKapow.Rd |only SIBER-2.1.9/SIBER/vignettes/kapow-example.Rmd |only 28 files changed, 178 insertions(+), 172 deletions(-)
Title: Text Tokenization using Byte Pair Encoding and Unigram Modelling
Description: Unsupervised text tokenizer allowing to perform byte pair encoding and unigram modelling.
Wraps the 'sentencepiece' library <https://github.com/google/sentencepiece> which provides a language independent tokenizer to split text in words and smaller subword units.
The techniques are explained in the paper "SentencePiece: A simple and language independent subword tokenizer and detokenizer for Neural Text Processing" by Taku Kudo and John Richardson (2018) <doi:10.18653/v1/D18-2012>.
Provides as well straightforward access to pretrained byte pair encoding models and subword embeddings trained on Wikipedia using 'word2vec',
as described in "BPEmb: Tokenization-free Pre-trained Subword Embeddings in 275 Languages" by Benjamin Heinzerling and Michael Strube (2018) <http://www.lrec-conf.org/proceedings/lrec2018/pdf/1049.pdf>.
Author: Jan Wijffels [aut, cre, cph] ,
BNOSAC [cph] ,
Google Inc. [ctb, cph] ,
The Abseil Authors [ctb, cph] ,
Google Inc. [ctb, cph] ),
Kenton Varda [ctb, cph] ),
Sanjay Ghemawat [ctb, cph] ),
Jeff Dean [ctb, cph] ),
Laszlo Csomor [ctb, cph] ),
Wink Sav [...truncated...]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between sentencepiece versions 0.2.4 dated 2025-11-27 and 0.2.5 dated 2026-02-09
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ src/Makevars | 1 + 4 files changed, 13 insertions(+), 7 deletions(-)
Title: Bayesian Deep Gaussian Processes using MCMC
Description: Performs Bayesian posterior inference for deep Gaussian
processes following Sauer, Gramacy, and Higdon (2023, <doi:10.48550/arXiv.2012.08015>).
See Sauer (2023, <http://hdl.handle.net/10919/114845>) for comprehensive
methodological details and <https://bitbucket.org/gramacylab/deepgp-ex/> for
a variety of coding examples. Models are trained through MCMC including
elliptical slice sampling of latent Gaussian layers and Metropolis-Hastings
sampling of kernel hyperparameters. Gradient-enhancement and gradient
predictions are offered following Booth (2025, <doi:10.48550/arXiv.2512.18066>).
Vecchia approximation for faster
computation is implemented following Sauer, Cooper, and Gramacy
(2023, <doi:10.48550/arXiv.2204.02904>). Optional monotonic warpings are
implemented following Barnett et al. (2025, <doi:10.48550/arXiv.2408.01540>).
Downstream tasks include sequential design
through active learning Cohn/integrated mean squared error (ALC/IMSE; Sauer,
G [...truncated...]
Author: Annie S. Booth [aut, cre]
Maintainer: Annie S. Booth <annie_booth@vt.edu>
Diff between deepgp versions 1.2.0 dated 2026-01-08 and 1.2.1 dated 2026-02-09
DESCRIPTION | 8 ++-- MD5 | 14 +++---- README.md | 7 +++ inst/doc/deepgp.R | 40 +++++++++++----------- inst/doc/deepgp.Rmd | 51 ++++++++++++++++------------ inst/doc/deepgp.html | 92 +++++++++++++++++++++++++++------------------------ src/vecchia.cpp | 16 ++++---- vignettes/deepgp.Rmd | 51 ++++++++++++++++------------ 8 files changed, 154 insertions(+), 125 deletions(-)
Title: Hemodynamic Response Functions for fMRI Data Analysis
Description: Creates, manipulates, and evaluates hemodynamic response functions
and event-related regressors for functional magnetic resonance imaging data
analysis. Supports multiple basis sets including Canonical, Gamma, Gaussian,
B-spline, and Fourier bases. Features decorators for time-shifting and blocking,
and efficient convolution algorithms for regressor construction. Methods are based
on standard fMRI analysis techniques as described in Jezzard et al. (2001, ISBN:9780192630711).
Author: Bradley Buchsbaum [aut, cre]
Maintainer: Bradley Buchsbaum <brad.buchsbaum@gmail.com>
Diff between fmrihrf versions 0.1.0 dated 2025-09-16 and 0.2.0 dated 2026-02-09
fmrihrf-0.1.0/fmrihrf/man/deriv.SPMG1_HRF.Rd |only fmrihrf-0.1.0/fmrihrf/man/deriv.SPMG2_HRF.Rd |only fmrihrf-0.1.0/fmrihrf/man/deriv.SPMG3_HRF.Rd |only fmrihrf-0.2.0/fmrihrf/DESCRIPTION | 8 fmrihrf-0.2.0/fmrihrf/MD5 | 95 - fmrihrf-0.2.0/fmrihrf/NAMESPACE | 7 fmrihrf-0.2.0/fmrihrf/NEWS.md |only fmrihrf-0.2.0/fmrihrf/R/deriv-methods.R | 6 fmrihrf-0.2.0/fmrihrf/R/evaluate-helpers.R | 121 - fmrihrf-0.2.0/fmrihrf/R/hrf-functions.R | 295 +++ fmrihrf-0.2.0/fmrihrf/R/hrf.R | 375 +++- fmrihrf-0.2.0/fmrihrf/R/reg-constructor.R | 141 + fmrihrf-0.2.0/fmrihrf/R/reg-methods.R | 314 +++ fmrihrf-0.2.0/fmrihrf/R/utils-internal.R | 4 fmrihrf-0.2.0/fmrihrf/build/vignette.rds |binary fmrihrf-0.2.0/fmrihrf/inst/doc/a_01_hemodynamic_response.R | 498 ++--- fmrihrf-0.2.0/fmrihrf/inst/doc/a_01_hemodynamic_response.Rmd | 590 +++--- fmrihrf-0.2.0/fmrihrf/inst/doc/a_01_hemodynamic_response.html | 932 +++------- fmrihrf-0.2.0/fmrihrf/inst/doc/a_02_regressor.R | 121 - fmrihrf-0.2.0/fmrihrf/inst/doc/a_02_regressor.Rmd | 121 - fmrihrf-0.2.0/fmrihrf/inst/doc/a_02_regressor.html | 139 - fmrihrf-0.2.0/fmrihrf/inst/doc/a_03_hrf_generators.html | 21 fmrihrf-0.2.0/fmrihrf/inst/doc/a_04_advanced_modeling.R | 7 fmrihrf-0.2.0/fmrihrf/inst/doc/a_04_advanced_modeling.Rmd | 7 fmrihrf-0.2.0/fmrihrf/inst/doc/a_04_advanced_modeling.html | 167 - fmrihrf-0.2.0/fmrihrf/man/HRF_objects.Rd | 14 fmrihrf-0.2.0/fmrihrf/man/Reg.Rd | 3 fmrihrf-0.2.0/fmrihrf/man/as_hrf.Rd | 15 fmrihrf-0.2.0/fmrihrf/man/deriv.HRF.Rd | 31 fmrihrf-0.2.0/fmrihrf/man/hrf_basis_lwu.Rd | 4 fmrihrf-0.2.0/fmrihrf/man/hrf_boxcar.Rd |only fmrihrf-0.2.0/fmrihrf/man/hrf_bspline.Rd | 4 fmrihrf-0.2.0/fmrihrf/man/hrf_gamma.Rd | 4 fmrihrf-0.2.0/fmrihrf/man/hrf_gaussian.Rd | 4 fmrihrf-0.2.0/fmrihrf/man/hrf_half_cosine.Rd | 42 fmrihrf-0.2.0/fmrihrf/man/hrf_inv_logit.Rd | 4 fmrihrf-0.2.0/fmrihrf/man/hrf_lwu.Rd | 4 fmrihrf-0.2.0/fmrihrf/man/hrf_mexhat.Rd | 4 fmrihrf-0.2.0/fmrihrf/man/hrf_sine.Rd | 4 fmrihrf-0.2.0/fmrihrf/man/hrf_spmg1.Rd | 4 fmrihrf-0.2.0/fmrihrf/man/hrf_tent_generator.Rd |only fmrihrf-0.2.0/fmrihrf/man/hrf_time.Rd | 4 fmrihrf-0.2.0/fmrihrf/man/hrf_weighted.Rd |only fmrihrf-0.2.0/fmrihrf/man/plot.HRF.Rd | 34 fmrihrf-0.2.0/fmrihrf/man/plot.Reg.Rd |only fmrihrf-0.2.0/fmrihrf/man/plot_hrfs.Rd |only fmrihrf-0.2.0/fmrihrf/man/plot_regressors.Rd |only fmrihrf-0.2.0/fmrihrf/man/print.HRF.Rd |only fmrihrf-0.2.0/fmrihrf/man/print.Rd | 6 fmrihrf-0.2.0/fmrihrf/man/regressor.Rd | 52 fmrihrf-0.2.0/fmrihrf/tests/testthat/test_hrf.R | 642 ++++++ fmrihrf-0.2.0/fmrihrf/vignettes/a_01_hemodynamic_response.Rmd | 590 +++--- fmrihrf-0.2.0/fmrihrf/vignettes/a_02_regressor.Rmd | 121 - fmrihrf-0.2.0/fmrihrf/vignettes/a_04_advanced_modeling.Rmd | 7 54 files changed, 3493 insertions(+), 2073 deletions(-)
Title: Core Tools for Packages in the 'fable' Framework
Description: Provides tools, helpers and data structures for
developing models and time series functions for 'fable' and extension
packages. These tools support a consistent and tidy interface for time
series modelling and analysis.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Rob Hyndman [aut],
Earo Wang [aut] ,
Di Cook [ctb],
George Athanasopoulos [ctb],
David Holt [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fabletools versions 0.5.1 dated 2025-09-01 and 0.6.0 dated 2026-02-09
fabletools-0.5.1/fabletools/tests/testthat/test-graphics.R |only fabletools-0.6.0/fabletools/DESCRIPTION | 13 -- fabletools-0.6.0/fabletools/MD5 | 83 ++++++------- fabletools-0.6.0/fabletools/NAMESPACE | 6 fabletools-0.6.0/fabletools/NEWS.md | 11 + fabletools-0.6.0/fabletools/R/accuracy.R | 6 fabletools-0.6.0/fabletools/R/components.R | 8 - fabletools-0.6.0/fabletools/R/dable.R | 4 fabletools-0.6.0/fabletools/R/frequency.R | 6 fabletools-0.6.0/fabletools/R/model.R | 4 fabletools-0.6.0/fabletools/R/model_decomposition.R | 3 fabletools-0.6.0/fabletools/R/plot.R | 40 +++++- fabletools-0.6.0/fabletools/R/reconciliation.R | 4 fabletools-0.6.0/fabletools/R/utils.R | 10 - fabletools-0.6.0/fabletools/R/xregs.R | 2 fabletools-0.6.0/fabletools/R/zzz.R | 29 ++++ fabletools-0.6.0/fabletools/README.md | 1 fabletools-0.6.0/fabletools/build/stage23.rdb |binary fabletools-0.6.0/fabletools/build/vignette.rds |binary fabletools-0.6.0/fabletools/inst/doc/extension_models.html | 5 fabletools-0.6.0/fabletools/man/accuracy.Rd | 2 fabletools-0.6.0/fabletools/man/aggregate_index.Rd | 7 - fabletools-0.6.0/fabletools/man/aggregate_key.Rd | 7 - fabletools-0.6.0/fabletools/man/augment.Rd | 2 fabletools-0.6.0/fabletools/man/autoplot.dcmp_ts.Rd | 2 fabletools-0.6.0/fabletools/man/autoplot.fbl_ts.Rd | 4 fabletools-0.6.0/fabletools/man/autoplot.tbl_ts.Rd | 2 fabletools-0.6.0/fabletools/man/combination_model.Rd | 2 fabletools-0.6.0/fabletools/man/common_xregs.Rd | 3 fabletools-0.6.0/fabletools/man/components.Rd | 8 - fabletools-0.6.0/fabletools/man/dable.Rd | 4 fabletools-0.6.0/fabletools/man/decomposition_model.Rd | 3 fabletools-0.6.0/fabletools/man/features.Rd | 2 fabletools-0.6.0/fabletools/man/forecast.Rd | 2 fabletools-0.6.0/fabletools/man/generate.mdl_df.Rd | 2 fabletools-0.6.0/fabletools/man/glance.Rd | 2 fabletools-0.6.0/fabletools/man/hypothesize.mdl_df.Rd | 2 fabletools-0.6.0/fabletools/man/interpolate.Rd | 2 fabletools-0.6.0/fabletools/man/model.Rd | 2 fabletools-0.6.0/fabletools/man/reconcile.Rd | 2 fabletools-0.6.0/fabletools/man/refit.Rd | 2 fabletools-0.6.0/fabletools/man/skill_score.Rd | 2 fabletools-0.6.0/fabletools/man/tidy.Rd | 2 43 files changed, 179 insertions(+), 124 deletions(-)
Title: Correlation Heatmaps
Description: Create correlation heatmaps from a numeric matrix. Ensembl Gene ID row names can be converted to Gene Symbols
using, e.g., BioMart. Optionally, data can be clustered and filtered by correlation, tree cutting and/or number
of missing values. Genes of interest can be highlighted in the plot and correlation significance be indicated by
asterisks encoding corresponding P-Values. Plot dimensions and label measures are adjusted automatically by default.
The plot features rely on the heatmap.n2() function in the 'heatmapFlex' package.
Author: Vidal Fey [aut, cre],
Henri Sara [aut]
Maintainer: Vidal Fey <vidal.fey@gmail.com>
This is a re-admission after prior archival of version 0.2.2 dated 2021-09-19
Diff between coreheat versions 0.2.2 dated 2021-09-19 and 0.3.2 dated 2026-02-09
DESCRIPTION | 16 MD5 | 22 - NAMESPACE | 1 R/cormap2.R | 189 ++++++++- build/vignette.rds |binary inst/doc/coreheat-vignette.R | 80 ++- inst/doc/coreheat-vignette.Rmd | 54 +- inst/doc/coreheat-vignette.html | 821 +++++++++++++++++++++++++++------------- man/coreheat.Rd | 2 man/cormap2.Rd | 21 + man/cormap_filt.Rd | 21 + vignettes/coreheat-vignette.Rmd | 54 +- 12 files changed, 936 insertions(+), 345 deletions(-)
More information about compositional.mle at CRAN
Permanent link
Title: Named Entity Recognition in Texts using 'NameTag'
Description: Wraps the 'nametag' library <https://github.com/ufal/nametag>, allowing users to find and extract entities (names, persons, locations, addresses, ...) in raw text and build your own entity recognition models.
Based on a maximum entropy Markov model which is described in Strakova J., Straka M. and Hajic J. (2013) <https://ufal.mff.cuni.cz/~straka/papers/2013-tsd_ner.pdf>.
Author: Jan Wijffels [aut, cre, cph] ,
BNOSAC [cph] ,
Institute of Formal and Applied Linguistics, Faculty of Mathematics and
Physics, Charles University in Prague, Czech Republic [cph],
Milan Straka [ctb, cph] ,
Jana Strakova [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between nametagger versions 0.1.6 dated 2026-01-30 and 0.1.7 dated 2026-02-09
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ src/nametag/src/classifier/network_classifier.cpp | 2 +- src/nametag/src/morphodita/morpho/persistent_unordered_map.h | 2 +- src/nametag/src/utils/unaligned_access.h | 8 ++++---- 6 files changed, 18 insertions(+), 14 deletions(-)
Title: Check Text Files Content at a Glance
Description: Tools to help text files importation. It can return the
number of lines; print the first and last lines; convert encoding;
guess delimiters and file encoding. Operations are made without
reading the entire file before starting, resulting in good
performances with large files. This package provides an alternative to
a simple use of the 'head', 'tail', 'wc' and 'iconv' programs that are
not always available on machine where R is installed.
Author: David Gohel [aut, cre]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between fpeek versions 0.1.2 dated 2021-03-31 and 0.2.0 dated 2026-02-09
DESCRIPTION | 38 +++++++++---------- MD5 | 36 +++++++++++------- NAMESPACE | 2 + NEWS.md | 13 ++++++ R/funs.R | 35 +++++++++--------- R/peek-guess-delim.R |only R/peek-guess-encoding.R |only README.md | 68 +++++++++++++++++++++++++++++++---- inst/datafiles/test-comma.csv |only inst/datafiles/test-pipe.csv |only inst/datafiles/test-semicolon.csv |only inst/datafiles/test-tab.csv |only man/peek_count_lines.Rd | 2 - man/peek_guess_delim.Rd |only man/peek_guess_encoding.Rd |only man/peek_head.Rd | 2 - man/peek_iconv.Rd | 1 man/peek_tail.Rd | 2 - src/RcppExports.cpp | 5 ++ tests/testthat/test-guess-delim.R |only tests/testthat/test-guess-encoding.R |only tests/testthat/test-headtail.R | 20 ++++++---- tests/testthat/test-iconv.R | 24 ++++++++---- tests/testthat/test-wcl.R | 1 24 files changed, 173 insertions(+), 76 deletions(-)
Title: Tools for Calculating Allocations in Game Theory using Exact and
Approximated Methods
Description: The main objective of cooperative Transferable-Utility games (TU-games)
is to allocate a good among the agents involved. The package implements major
solution concepts including the Shapley value, Banzhaf value, and egalitarian
rules, alongside their extensions for structured games:
the Owen value and Banzhaf-Owen value for games with a priori unions, and the
Myerson value for communication games on networks. To address the inherent exponential
computational complexity of exact evaluation, the package offers both exact
algorithms and linear approximation methods based on sampling, enabling the
analysis of large-scale games. Additionally, it supports core set-based
solutions, allowing computation of the vertices and the centroid of the core.
Author: Maria D. Guillen [cre, aut] ,
Juan Carlos Goncalves [aut]
Maintainer: Maria D. Guillen <maria.guilleng@umh.es>
Diff between TUvalues versions 1.1.0 dated 2025-12-16 and 1.1.1 dated 2026-02-09
DESCRIPTION | 8 +++--- MD5 | 10 ++++---- NAMESPACE | 10 +++++--- R/core_appro.R | 64 ++++++++++++++++++++++++++---------------------------- R/core_exact.R | 2 - man/core_appro.Rd | 5 +--- 6 files changed, 48 insertions(+), 51 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') for
temporal data in an data- and model-oriented format. The 'tsibble'
provides tools to easily manipulate and analyse temporal data, such as
filling in time gaps and aggregating over calendar periods.
Author: Earo Wang [aut] ,
Di Cook [aut, ths] ,
Rob Hyndman [aut, ths] ,
Mitchell O'Hara-Wild [aut, cre] ,
Tyler Smith [ctb],
Wil Davis [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between tsibble versions 1.1.6 dated 2025-01-30 and 1.2.0 dated 2026-02-09
DESCRIPTION | 41 ++++++------ MD5 | 76 +++++++++++----------- NAMESPACE | 12 ++- NEWS.md | 13 +++ R/as-tsibble.R | 34 +++++---- R/dplyr-verbs.R | 5 + R/error.R | 13 --- R/filter-index.R | 4 - R/gaps.R | 16 ++-- R/holiday.R | 2 R/scales.R | 4 - R/summary.R |only R/tsibble-meta.R | 133 +++++++++++++++++++++++++++++++++++++-- R/tsibble-package.R | 2 R/vctrs-tsibble.R | 9 ++ R/yearquarter.R | 12 ++- build/vignette.rds |binary inst/WORDLIST | 65 +++++++------------ inst/doc/faq.html | 5 - inst/doc/implicit-na.html | 7 +- inst/doc/intro-tsibble.Rmd | 2 inst/doc/intro-tsibble.html | 13 ++- man/as-tsibble.Rd | 14 ++-- man/build_tsibble.Rd | 12 ++- man/duplicates.Rd | 12 ++- man/filter_index.Rd | 5 - man/index-rd.Rd | 14 ++++ man/key.Rd | 13 +++ man/measured-vars.Rd | 41 ++++++++++++ man/tsibble-package.Rd | 5 - man/tsibble.Rd | 20 ++++- man/unnest_tsibble.Rd | 8 +- man/update_tsibble.Rd | 14 ++-- tests/testthat/test-dplyr.R | 11 +++ tests/testthat/test-gaps.R | 10 ++ tests/testthat/test-tidyr.R | 39 +++++++++++ tests/testthat/test-tidyselect.R |only tests/testthat/test-tsibble.R | 34 ++++++++- tests/testthat/test-tsibble2ts.R | 16 ++-- vignettes/intro-tsibble.Rmd | 2 40 files changed, 530 insertions(+), 208 deletions(-)
Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals,
prime number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas [aut, cre] ,
Immanuel Scholz [aut],
Rainer Boehme [ctb],
Sylvain Jasson [ctb],
Martin Maechler [ctb]
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between gmp versions 0.7-5 dated 2024-08-23 and 0.7-5.1 dated 2026-02-09
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- src/Rgmp.h | 3 +++ 3 files changed, 10 insertions(+), 6 deletions(-)
Title: Feature Extraction and Statistics for Time Series
Description: Provides a collection of features, decomposition methods,
statistical summaries and graphics functions for the analysing tidy time
series data. The package name 'feasts' is an acronym comprising of its key
features: Feature Extraction And Statistics for Time Series.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Di Cook [ctb],
Thiyanga Talagala [ctb] ,
Leanne Chhay [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between feasts versions 0.4.2 dated 2025-08-27 and 0.5.0 dated 2026-02-09
feasts-0.4.2/feasts/man/autoplot.tbl_cf.Rd |only feasts-0.4.2/feasts/man/gg_arma.Rd |only feasts-0.4.2/feasts/man/gg_irf.Rd |only feasts-0.4.2/feasts/man/gg_lag.Rd |only feasts-0.4.2/feasts/man/gg_season.Rd |only feasts-0.4.2/feasts/man/gg_subseries.Rd |only feasts-0.4.2/feasts/man/gg_tsdisplay.Rd |only feasts-0.4.2/feasts/man/gg_tsresiduals.Rd |only feasts-0.4.2/feasts/man/scale_cf_lag.Rd |only feasts-0.4.2/feasts/tests/testthat/test-graphics.R |only feasts-0.5.0/feasts/DESCRIPTION | 15 feasts-0.5.0/feasts/MD5 | 62 feasts-0.5.0/feasts/NAMESPACE | 34 feasts-0.5.0/feasts/NEWS.md | 6 feasts-0.5.0/feasts/R/acf.R | 106 - feasts-0.5.0/feasts/R/features.R | 73 - feasts-0.5.0/feasts/R/graphics.R | 922 ------------- feasts-0.5.0/feasts/R/seats.R | 2 feasts-0.5.0/feasts/R/utils.R | 8 feasts-0.5.0/feasts/R/x11.R | 2 feasts-0.5.0/feasts/R/x13arimaseats.R | 2 feasts-0.5.0/feasts/README.md | 53 feasts-0.5.0/feasts/build/vignette.rds |binary feasts-0.5.0/feasts/inst/doc/feasts.html | 30 feasts-0.5.0/feasts/man/ACF.Rd | 2 feasts-0.5.0/feasts/man/STL.Rd | 6 feasts-0.5.0/feasts/man/cointegration_phillips_ouliaris.Rd | 66 feasts-0.5.0/feasts/man/feasts-package.Rd | 2 feasts-0.5.0/feasts/man/figures/README-dcmp-plot-1.png |binary feasts-0.5.0/feasts/man/figures/README-extreme-1.png |binary feasts-0.5.0/feasts/man/figures/README-features-plot-1.png |binary feasts-0.5.0/feasts/man/figures/README-graphics-1.png |binary feasts-0.5.0/feasts/man/figures/README-graphics-2.png |binary feasts-0.5.0/feasts/man/figures/README-graphics-3.png |binary feasts-0.5.0/feasts/man/figures/README-graphics-4.png |binary feasts-0.5.0/feasts/man/reexports.Rd | 11 feasts-0.5.0/feasts/tests/testthat/test-cf.R | 33 37 files changed, 242 insertions(+), 1193 deletions(-)
Title: Applied Econometrics with R
Description: Functions, data sets, examples, demos, and vignettes for the book
Christian Kleiber and Achim Zeileis (2008),
Applied Econometrics with R, Springer-Verlag, New York.
ISBN 978-0-387-77316-2. <doi:10.1007/978-0-387-77318-6>
(See the vignette "AER" for a package overview.)
Author: Christian Kleiber [aut] ,
Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between AER versions 1.2-15 dated 2025-06-18 and 1.2-16 dated 2026-02-09
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 5 +++++ inst/doc/AER.Rnw | 12 ++++++------ inst/doc/AER.pdf |binary inst/doc/Sweave-journals.pdf |binary tests/Ch-Validation.R | 1 - tests/Ch-Validation.Rout.save | 9 --------- vignettes/AER.Rnw | 12 ++++++------ vignettes/aer.bib | 2 +- 10 files changed, 31 insertions(+), 36 deletions(-)
Title: 'vcd' Extensions and Additions
Description: Provides additional data sets, methods and documentation to complement the 'vcd' package for Visualizing Categorical Data
and the 'gnm' package for Generalized Nonlinear Models.
In particular, 'vcdExtra' extends mosaic, assoc and sieve plots from 'vcd' to handle 'glm()' and 'gnm()' models and
adds a 3D version in 'mosaic3d'. Additionally, methods are provided for comparing and visualizing lists of
'glm' and 'loglm' objects. This package is now a support package for the book, "Discrete Data Analysis with R" by
Michael Friendly and David Meyer.
Author: Michael Friendly [aut, cre] ,
David Meyer [ctb],
Achim Zeileis [ctb] ,
Duncan Murdoch [ctb],
Heather Turner [ctb] ,
David Firth [ctb],
Daniel Sabanes Bove [ctb],
Matt Kumar [ctb],
Shuguang Sun [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between vcdExtra versions 0.9.0 dated 2026-01-21 and 0.9.1 dated 2026-02-09
DESCRIPTION | 15 MD5 | 275 - NAMESPACE | 256 - NEWS.md | 18 R/CrabSatellites.R | 126 R/Crossings.R | 150 R/color_table.R |only R/data.R | 6264 ++++++++++++++++++------------------ R/get_model.R |only R/glmlist.R | 146 R/labeling_points.R |only R/mosaic.glm.R | 718 ++-- R/mosaic3d.R | 15 R/seq_loglm.R | 30 R/split3d.R | 3 R/vcdExtra-package.R | 246 - R/woolf_test.R | 718 ++-- build/partial.rdb |only build/vignette.rds |binary data/Reinis.rda |only demo/00Index | 4 demo/Wong2-3.R | 10 demo/Wong3-1.R | 2 demo/mosaic3d-hec.R | 2 demo/ucb-glm.R | 53 demo/yaish-unidiff.R | 72 inst/WORDLIST | 546 +-- inst/doc/a1-creating.Rmd | 1552 ++++---- inst/doc/a1-creating.html | 9 inst/doc/a2-tests.Rmd | 796 ++-- inst/doc/a2-tests.html | 9 inst/doc/a3-loglinear.Rmd | 508 +- inst/doc/a3-loglinear.html | 9 inst/doc/a4-mosaics.Rmd | 878 ++--- inst/doc/a4-mosaics.html | 11 inst/doc/a5-demo-housing.Rmd | 742 ++-- inst/doc/a5-demo-housing.html | 9 inst/doc/a6-mobility.Rmd | 804 ++-- inst/doc/a6-mobility.html | 9 inst/doc/a7-continuous.Rmd | 440 +- inst/doc/a7-continuous.html | 11 inst/doc/datasets.Rmd | 288 - inst/doc/datasets.html | 11 inst/doc/tidyCats.Rmd | 21 inst/doc/tidyCats.html | 27 inst/extdata/tv.dat | 1650 ++++----- man/Abortion.Rd | 116 man/Accident.Rd | 236 - man/AirCrash.Rd | 136 man/Alligator.Rd | 126 man/Asbestos.Rd | 118 man/Bartlett.Rd | 126 man/Burt.Rd | 104 man/CMHtest.Rd | 444 +- man/Caesar.Rd | 170 man/Cancer.Rd | 78 man/Cormorants.Rd | 156 man/CrabSatellites.Rd | 124 man/Crossings.Rd | 116 man/CyclingDeaths.Rd | 120 man/DaytonSurvey.Rd | 150 man/Depends.Rd | 110 man/Detergent.Rd | 110 man/Donner.Rd | 240 - man/Draft1970.Rd | 136 man/Draft1970table.Rd | 182 - man/Dyke.Rd | 162 man/Fungicide.Rd | 122 man/GKgamma.Rd | 138 man/GSS.Rd | 86 man/Geissler.Rd | 142 man/Gilby.Rd | 112 man/Glass.Rd | 144 man/HLtest.Rd | 226 - man/HairEyePlace.Rd | 112 man/Hauser79.Rd | 314 - man/Heart.Rd | 78 man/Heckman.Rd | 148 man/HospVisits.Rd | 102 man/HouseTasks.Rd | 124 man/Hoyt.Rd | 230 - man/ICU.Rd | 226 - man/JobSat.Rd | 76 man/Kway.Rd | 218 - man/LRstats.Rd | 178 - man/Mammograms.Rd | 80 man/Mental.Rd | 106 man/Mice.Rd | 90 man/Mobility.Rd | 96 man/PhdPubs.Rd | 110 man/Reinis.Rd |only man/ShakeWords.Rd | 90 man/Summarise.Rd | 160 man/TV.Rd | 154 man/Titanicp.Rd | 104 man/Toxaemia.Rd | 138 man/Vietnam.Rd | 100 man/Vote1980.Rd | 94 man/WorkerSat.Rd | 76 man/Yamaguchi87.Rd | 214 - man/blogits.Rd | 148 man/collapse.table.Rd | 218 - man/color_table.Rd |only man/cutfac.Rd | 166 man/datasets.Rd | 156 man/expand.dft.Rd | 134 man/figures/logo-new.jpg |only man/figures/logo-old.png |only man/figures/logo.png |binary man/get_model.Rd |only man/glmlist.Rd | 272 - man/labeling_points.Rd |only man/logLik.loglm.Rd | 160 man/loglin-utilities.Rd | 241 - man/logseries.Rd | 200 - man/mcaplot.Rd | 200 - man/modFit.Rd | 104 man/mosaic.glm.Rd | 490 +- man/mosaic.glmlist.Rd | 332 - man/mosaic3d.Rd | 357 +- man/print.Kappa.Rd | 102 man/seq_loglm.Rd | 211 - man/seq_mosaic.Rd | 180 - man/split3d.Rd | 181 - man/update.xtabs.Rd | 94 man/vcdExtra-package.Rd | 240 - man/woolf_test.Rd | 2 man/zero.test.Rd | 148 tests/testthat.R | 24 tests/testthat/data/adcibc.csv | 464 +- tests/testthat/data/create_adcibc.R | 32 tests/testthat/test-CMHtest.R | 340 - vignettes/a1-creating.Rmd | 1552 ++++---- vignettes/a2-tests.Rmd | 796 ++-- vignettes/a3-loglinear.Rmd | 508 +- vignettes/a4-mosaics.Rmd | 878 ++--- vignettes/a5-demo-housing.Rmd | 742 ++-- vignettes/a6-mobility.Rmd | 804 ++-- vignettes/a7-continuous.Rmd | 440 +- vignettes/apa.csl | 1242 +++---- vignettes/datasets.Rmd | 288 - vignettes/tidyCats.Rmd | 21 vignettes/vcdExtra.bib | 4 vignettes/vignettes.bib | 90 144 files changed, 19048 insertions(+), 18614 deletions(-)
Title: Simulation of Study Data
Description: Simulates data sets in order to explore modeling
techniques or better understand data generating processes. The user
specifies a set of relationships between covariates, and generates
data based on these specifications. The final data sets can represent
data from randomized control trials, repeated measure (longitudinal)
designs, and cluster randomized trials. Missingness can be generated
using various mechanisms (MCAR, MAR, NMAR).
Author: Keith Goldfeld [aut, cre] ,
Jacob Wujciak-Jens [aut]
Maintainer: Keith Goldfeld <keith.goldfeld@nyulangone.org>
Diff between simstudy versions 0.9.1 dated 2025-12-16 and 0.9.2 dated 2026-02-09
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/clustered.html | 2 +- inst/doc/longitudinal.html | 2 +- tests/testthat/test-generate_correlated_data.R | 8 ++++++-- 5 files changed, 16 insertions(+), 12 deletions(-)
Title: Bayesian Estimation of Probit Unfolding Models for Binary
Preference Data
Description: Bayesian estimation and analysis methods for Probit Unfolding Models (PUMs), a novel class of scaling models designed for binary preference data. These models allow for both monotonic and non-monotonic response functions. The package supports Bayesian inference for both static and dynamic PUMs using Markov chain Monte Carlo (MCMC) algorithms with minimal or no tuning. Key functionalities include posterior sampling, hyperparameter selection, data preprocessing, model fit evaluation, and visualization. The methods are particularly suited to analyzing voting data, such as from the U.S. Congress or Supreme Court, but can also be applied in other contexts where non-monotonic responses are expected. For methodological details, see Shi et al. (2025) <doi:10.48550/arXiv.2504.00423>.
Author: Skylar Shi [aut, cre] ,
Abel Rodriguez [aut] ,
Rayleigh Lei [aut] ,
Jonathan Olmsted [cph]
Maintainer: Skylar Shi <dshi98@uw.edu>
This is a re-admission after prior archival of version 1.0.1 dated 2025-10-22
Diff between pumBayes versions 1.0.1 dated 2025-10-22 and 1.0.2 dated 2026-02-09
DESCRIPTION | 6 ++-- MD5 | 10 +++--- R/scotus.1937.2021.R | 1 README.md | 32 ++++++++++++++++++++- man/scotus.1937.2021.Rd | 1 src/three_utility_probit_helper_functions.cpp | 39 +++++++++++++------------- 6 files changed, 59 insertions(+), 30 deletions(-)
Title: Professional Comprehensive Omics Data Analysis
Description: Provides a comprehensive suite of tools for analyzing omics data. It includes
functionalities for alpha diversity analysis, beta diversity analysis, differential
abundance analysis, community assembly analysis, visualization of phylogenetic tree, and
functional enrichment analysis. With a progressive approach, the package offers a range of
analysis methods to explore and understand the complex communities. It is designed to
support researchers and practitioners in conducting in-depth and professional omics data
analysis.
Author: Chen Peng [aut, cre]
Maintainer: Chen Peng <bfzede@gmail.com>
Diff between pctax versions 0.1.3 dated 2024-12-02 and 0.1.7 dated 2026-02-09
pctax-0.1.3/pctax/vignettes/pctax_cache/html/lib_edaa109a9155baa43419851f33b3cf81.rdb |only pctax-0.1.3/pctax/vignettes/pctax_cache/html/lib_edaa109a9155baa43419851f33b3cf81.rdx |only pctax-0.1.3/pctax/vignettes/pctax_cache/html/setup_8ae11416e5c5639c1c730c1286b53fc5.rdb |only pctax-0.1.3/pctax/vignettes/pctax_cache/html/setup_8ae11416e5c5639c1c730c1286b53fc5.rdx |only pctax-0.1.3/pctax/vignettes/pctax_cache/html/unnamed-chunk-2_a4c6eae63fe4b35c079f4cfe25d48d88.rdb |only pctax-0.1.3/pctax/vignettes/pctax_cache/html/unnamed-chunk-2_a4c6eae63fe4b35c079f4cfe25d48d88.rdx |only pctax-0.1.7/pctax/DESCRIPTION | 41 pctax-0.1.7/pctax/MD5 | 73 pctax-0.1.7/pctax/NAMESPACE | 23 pctax-0.1.7/pctax/NEWS.md | 29 pctax-0.1.7/pctax/R/Rtaxonkit.R | 14 pctax-0.1.7/pctax/R/b_analyse.R | 91 pctax-0.1.7/pctax/R/diff_analyse.R | 117 + pctax-0.1.7/pctax/R/other_software.R | 963 +++++++++- pctax-0.1.7/pctax/R/pctax-package.R | 4 pctax-0.1.7/pctax/R/phylogenetic.R | 226 ++ pctax-0.1.7/pctax/R/stats.R |only pctax-0.1.7/pctax/build/vignette.rds |binary pctax-0.1.7/pctax/inst/doc/pctax.R | 6 pctax-0.1.7/pctax/inst/doc/pctax.html | 3 pctax-0.1.7/pctax/man/ALDEX.Rd | 12 pctax-0.1.7/pctax/man/RDA_plot.Rd | 7 pctax-0.1.7/pctax/man/ann_tree.Rd | 4 pctax-0.1.7/pctax/man/batch_mediate.Rd |only pctax-0.1.7/pctax/man/df2tree.Rd | 4 pctax-0.1.7/pctax/man/df2tree1.Rd | 8 pctax-0.1.7/pctax/man/drop_tips_update.Rd |only pctax-0.1.7/pctax/man/load_mpa_df.Rd |only pctax-0.1.7/pctax/man/multi_bar.Rd | 2 pctax-0.1.7/pctax/man/multi_conf.Rd |only pctax-0.1.7/pctax/man/myRDA.Rd | 1 pctax-0.1.7/pctax/man/pctax-package.Rd | 2 pctax-0.1.7/pctax/man/permanova.Rd | 3 pctax-0.1.7/pctax/man/plot.b_res.Rd | 6 pctax-0.1.7/pctax/man/plot_checkm2_res.Rd |only pctax-0.1.7/pctax/man/plot_contigs_quality.Rd |only pctax-0.1.7/pctax/man/plot_gtdb_tr.Rd |only pctax-0.1.7/pctax/man/plot_one_phage.Rd |only pctax-0.1.7/pctax/man/pre_assembly_stats.Rd |only pctax-0.1.7/pctax/man/pre_format_report.Rd |only pctax-0.1.7/pctax/man/pre_genomad.Rd |only pctax-0.1.7/pctax/man/pre_gtdb_tk.Rd |only pctax-0.1.7/pctax/man/pre_tax_table.Rd | 5 pctax-0.1.7/pctax/man/print.virus_res.Rd |only pctax-0.1.7/pctax/man/stamp_plot.Rd |only pctax-0.1.7/pctax/vignettes/pctax_cache/html/lib_7858f483600c014896211e60e0626680.rdb |only pctax-0.1.7/pctax/vignettes/pctax_cache/html/lib_7858f483600c014896211e60e0626680.rdx |only pctax-0.1.7/pctax/vignettes/pctax_cache/html/setup_35e25c351e84cb5efd95fe39f6eabc01.rdb |only pctax-0.1.7/pctax/vignettes/pctax_cache/html/setup_35e25c351e84cb5efd95fe39f6eabc01.rdx |only pctax-0.1.7/pctax/vignettes/pctax_cache/html/unnamed-chunk-2_277d2e2f2b7b90d394584184e383ae77.rdb |only pctax-0.1.7/pctax/vignettes/pctax_cache/html/unnamed-chunk-2_277d2e2f2b7b90d394584184e383ae77.rdx |only 51 files changed, 1475 insertions(+), 169 deletions(-)
Title: Network Analysis for Omics Data
Description: Comprehensive network analysis package.
Calculate correlation network fastly, accelerate lots of analysis by parallel computing.
Support for multi-omics data, search sub-nets fluently.
Handle bigger data, more than 10,000 nodes in each omics.
Offer various layout method for multi-omics network and some interfaces to other software ('Gephi', 'Cytoscape', 'ggplot2'), easy to visualize.
Provide comprehensive topology indexes calculation, including ecological network stability.
Author: Chen Peng [aut, cre]
Maintainer: Chen Peng <bfzede@gmail.com>
Diff between MetaNet versions 0.2.7 dated 2025-06-26 and 0.2.8 dated 2026-02-09
DESCRIPTION | 10 +++---- MD5 | 30 ++++++++++++---------- NAMESPACE | 1 R/1.calculate.R | 60 ++++++++++++++++++++++++++++++++++++++++++++- R/2-2.manipulate.R | 12 +++------ R/2-3.RMT.R | 15 ++++++++--- R/5.topological.R | 7 +++-- R/8.net_compare.R | 4 +-- R/MetaNet-package.R | 1 README.md | 55 ++++++++++------------------------------- build/vignette.rds |binary inst/doc/MetaNet.R | 6 ++-- inst/doc/MetaNet.html | 9 +++--- man/RMT_threshold.Rd | 3 ++ man/figures/MetaNet_GA.jpg |only man/net_par.Rd | 5 +++ man/plot_corr_heatmap.Rd |only 17 files changed, 133 insertions(+), 85 deletions(-)
Title: Grammar of Graphics and Plot Helpers for Time Series
Visualization
Description: Extends the capabilities of 'ggplot2' by providing grammatical
elements and plot helpers designed for visualizing temporal patterns. The
package implements a grammar of temporal graphics, which leverages calendar
structures to highlight changes over time. The package also provides plot
helper functions to quickly produce commonly used time series graphics,
including time plots, season plots, and seasonal sub-series plots.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Cynthia A. Huang [aut] ,
Matthew Kay [aut] ,
Rob Hyndman [aut] ,
Earo Wang [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between ggtime versions 0.1.0 dated 2025-06-10 and 0.2.0 dated 2026-02-09
ggtime-0.1.0/ggtime/R/cal_wrap.R |only ggtime-0.1.0/ggtime/R/coord-calendar.R |only ggtime-0.1.0/ggtime/R/seq-gen.R |only ggtime-0.1.0/ggtime/tests/testthat/Rplots.pdf |only ggtime-0.2.0/ggtime/DESCRIPTION | 28 ggtime-0.2.0/ggtime/MD5 | 51 ggtime-0.2.0/ggtime/NAMESPACE | 15 ggtime-0.2.0/ggtime/NEWS.md | 15 ggtime-0.2.0/ggtime/R/ggplot-dep.R |only ggtime-0.2.0/ggtime/R/ggtime-package.R | 3 ggtime-0.2.0/ggtime/R/plot-dable.R | 147 +- ggtime-0.2.0/ggtime/R/plot-fable.R |only ggtime-0.2.0/ggtime/R/plot-helpers.R | 706 +++++++---- ggtime-0.2.0/ggtime/R/plot-tsibble.R | 92 - ggtime-0.2.0/ggtime/R/utils.R | 202 ++- ggtime-0.2.0/ggtime/README.md | 55 ggtime-0.2.0/ggtime/man/autoplot.dcmp_ts.Rd | 1 ggtime-0.2.0/ggtime/man/autoplot.fbl_ts.Rd |only ggtime-0.2.0/ggtime/man/autoplot.tbl_cf.Rd |only ggtime-0.2.0/ggtime/man/autoplot.tbl_ts.Rd | 7 ggtime-0.2.0/ggtime/man/figures/README-seasonplot-1.png |binary ggtime-0.2.0/ggtime/man/figures/README-timeplot-1.png |binary ggtime-0.2.0/ggtime/man/figures/README-unnamed-chunk-2-1.png |only ggtime-0.2.0/ggtime/man/figures/logo.svg |only ggtime-0.2.0/ggtime/man/ggtime-package.Rd | 14 ggtime-0.2.0/ggtime/man/scale_cf_lag.Rd |only ggtime-0.2.0/ggtime/tests/testthat/_snaps |only ggtime-0.2.0/ggtime/tests/testthat/helper-vdiffr.R |only ggtime-0.2.0/ggtime/tests/testthat/test-plot-helpers.R | 41 29 files changed, 982 insertions(+), 395 deletions(-)
Title: Probabilities for Pedigrees Given DNA Data
Description: An interface to the core 'Familias' functions which are
programmed in C++. The implementation is described in Egeland, Mostad and Olaisen
(1997) <doi:10.1016/S1355-0306(97)72202-0> and Simonsson and Mostad
(2016) <doi:10.1016/j.fsigen.2016.04.005>.
Author: Petter Mostad [aut],
Thore Egeland [aut],
Franco Marsico [aut, cre],
Ivar Simonsson [aut]
Maintainer: Franco Marsico <franco.lmarsico@gmail.com>
Diff between Familias versions 2.6.3 dated 2025-05-12 and 2.6.4 dated 2026-02-09
DESCRIPTION | 17 MD5 | 36 - NAMESPACE | 20 NEWS.md | 18 R/FamiliasLocus.R | 1246 +++++++++++++++++++++---------------------- R/FamiliasPedigree.R | 62 +- R/FamiliasPosterior.R | 506 ++++++++--------- R/FamiliasPrior.R | 272 ++++----- R/plot.FamiliasPedigree.R | 64 +- README.md | 66 +- man/Familias-package.Rd | 148 ++--- man/FamiliasLocus.Rd | 382 ++++++------- man/FamiliasPedigree.Rd | 162 ++--- man/FamiliasPosterior.Rd | 458 +++++++-------- man/FamiliasPrior.Rd | 176 +++--- man/NorwegianFrequencies.Rd | 78 +- man/plot.FamiliasPedigree.Rd | 102 +-- src/GroupOfPersons.cpp | 23 src/table.cpp | 20 19 files changed, 1936 insertions(+), 1920 deletions(-)
Title: Panel Generalized Linear Models
Description: Estimation of panel models for glm-like models:
this includes binomial models (logit and probit), count models (poisson and negbin)
and ordered models (logit and probit), as described in:
Baltagi (2013) Econometric Analysis of Panel Data, ISBN-13:978-1-118-67232-7,
Hsiao (2014) Analysis of Panel Data <doi:10.1017/CBO9781139839327> and
Croissant and Millo (2018), Panel Data Econometrics with R, ISBN:978-1-118-94918-4.
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between pglm versions 0.2-3 dated 2021-07-19 and 0.2-4 dated 2026-02-09
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ data/Fairness.rda |binary data/HealthIns.rda |binary data/PatentsRD.rda |binary data/PatentsRDUS.rda |binary data/UnionWage.rda |binary man/HealthIns.Rd | 2 +- man/PatentsRD.Rd | 4 ++-- man/PatentsRDUS.Rd | 4 ++-- 11 files changed, 23 insertions(+), 19 deletions(-)
Title: Unconstrained Numerical Optimization Algorithms
Description: Optimization algorithms implemented in R, including
conjugate gradient (CG), Broyden-Fletcher-Goldfarb-Shanno (BFGS) and the
limited memory BFGS (L-BFGS) methods. Most internal parameters can be set
through the call interface. The solvers hold up quite well for
higher-dimensional problems.
Author: James Melville [aut, cre]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between mize versions 0.2.4 dated 2020-08-30 and 0.2.5 dated 2026-02-09
DESCRIPTION | 9 MD5 | 24 NEWS.md | 9 R/rasmussen.R | 6 build/vignette.rds |binary inst/doc/convergence.html | 547 +++++++++------- inst/doc/mize.Rmd | 8 inst/doc/mize.html | 1225 ++++++++++++++++++++++++------------ inst/doc/mmds.html | 503 ++++++++------ inst/doc/stateful.html | 694 ++++++++++++-------- tests/testthat/test_minfunc_wolfe.R | 14 tests/testthat/test_rasmussen_cg.R | 4 vignettes/mize.Rmd | 8 13 files changed, 1911 insertions(+), 1140 deletions(-)
Title: Lightweight Toolkit for Messaging, Concurrency and the Web
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ.
A toolkit for messaging, concurrency and the web. High-performance
socket messaging over in-process, IPC, TCP, WebSocket and secure TLS
transports implements 'Scalability Protocols', a standard for common
communications patterns including publish/subscribe, request/reply and
survey. A threaded concurrency framework with intuitive 'aio' objects
that resolve automatically upon completion of asynchronous operations,
and synchronisation primitives that allow R to wait on events
signalled by concurrent threads. A unified HTTP server hosting REST
endpoints, WebSocket connections and streaming on a single port, with
a built-in HTTP client.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph],
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between nanonext versions 1.7.2 dated 2025-11-03 and 1.8.0 dated 2026-02-09
nanonext-1.7.2/nanonext/inst/CITATION |only nanonext-1.7.2/nanonext/src/mbedtls-362.tar.xz |only nanonext-1.7.2/nanonext/src/nng-111.tar.xz |only nanonext-1.8.0/nanonext/DESCRIPTION | 30 nanonext-1.8.0/nanonext/MD5 | 484 ++++++++ nanonext-1.8.0/nanonext/NAMESPACE | 17 nanonext-1.8.0/nanonext/NEWS.md | 24 nanonext-1.8.0/nanonext/R/aio.R | 17 nanonext-1.8.0/nanonext/R/context.R | 1 nanonext-1.8.0/nanonext/R/dispatcher.R |only nanonext-1.8.0/nanonext/R/ncurl.R | 84 - nanonext-1.8.0/nanonext/R/server.R |only nanonext-1.8.0/nanonext/R/tls.R | 23 nanonext-1.8.0/nanonext/README.md | 289 +---- nanonext-1.8.0/nanonext/build/vignette.rds |binary nanonext-1.8.0/nanonext/cleanup | 2 nanonext-1.8.0/nanonext/cleanup.win | 2 nanonext-1.8.0/nanonext/configure | 241 +--- nanonext-1.8.0/nanonext/configure.ucrt | 22 nanonext-1.8.0/nanonext/configure.win | 30 nanonext-1.8.0/nanonext/inst/doc/nanonext.Rmd | 820 ++++---------- nanonext-1.8.0/nanonext/inst/doc/nanonext.html | 881 +++++++--------- nanonext-1.8.0/nanonext/inst/doc/v01-messaging.Rmd |only nanonext-1.8.0/nanonext/inst/doc/v01-messaging.html |only nanonext-1.8.0/nanonext/inst/doc/v02-protocols.Rmd |only nanonext-1.8.0/nanonext/inst/doc/v02-protocols.html |only nanonext-1.8.0/nanonext/inst/doc/v03-configuration.Rmd |only nanonext-1.8.0/nanonext/inst/doc/v03-configuration.html |only nanonext-1.8.0/nanonext/inst/doc/v04-web.Rmd |only nanonext-1.8.0/nanonext/inst/doc/v04-web.html |only nanonext-1.8.0/nanonext/man/close.Rd | 7 nanonext-1.8.0/nanonext/man/dot-context.Rd | 1 nanonext-1.8.0/nanonext/man/dot-dispatcher.Rd |only nanonext-1.8.0/nanonext/man/format_sse.Rd |only nanonext-1.8.0/nanonext/man/handler.Rd |only nanonext-1.8.0/nanonext/man/handler_directory.Rd |only nanonext-1.8.0/nanonext/man/handler_file.Rd |only nanonext-1.8.0/nanonext/man/handler_inline.Rd |only nanonext-1.8.0/nanonext/man/handler_redirect.Rd |only nanonext-1.8.0/nanonext/man/handler_stream.Rd |only nanonext-1.8.0/nanonext/man/handler_ws.Rd |only nanonext-1.8.0/nanonext/man/http_server.Rd |only nanonext-1.8.0/nanonext/man/ncurl.Rd | 35 nanonext-1.8.0/nanonext/man/ncurl_aio.Rd | 30 nanonext-1.8.0/nanonext/man/ncurl_session.Rd | 30 nanonext-1.8.0/nanonext/man/race_aio.Rd |only nanonext-1.8.0/nanonext/man/tls_config.Rd | 26 nanonext-1.8.0/nanonext/src/Makevars.in | 19 nanonext-1.8.0/nanonext/src/Makevars.ucrt | 19 nanonext-1.8.0/nanonext/src/Makevars.win | 19 nanonext-1.8.0/nanonext/src/aio.c | 208 ++- nanonext-1.8.0/nanonext/src/comms.c | 121 +- nanonext-1.8.0/nanonext/src/core.c | 38 nanonext-1.8.0/nanonext/src/dispatcher.c |only nanonext-1.8.0/nanonext/src/init.c | 16 nanonext-1.8.0/nanonext/src/mbedtls |only nanonext-1.8.0/nanonext/src/nanonext.h | 143 ++ nanonext-1.8.0/nanonext/src/ncurl.c | 128 +- nanonext-1.8.0/nanonext/src/nng |only nanonext-1.8.0/nanonext/src/nng_structs.h |only nanonext-1.8.0/nanonext/src/proto.c | 10 nanonext-1.8.0/nanonext/src/server.c |only nanonext-1.8.0/nanonext/src/sync.c | 6 nanonext-1.8.0/nanonext/src/thread.c | 4 nanonext-1.8.0/nanonext/src/tls.c | 14 nanonext-1.8.0/nanonext/src/utils.c | 6 nanonext-1.8.0/nanonext/tests/tests.R | 722 ++++++++++++- nanonext-1.8.0/nanonext/vignettes/nanonext.Rmd | 820 ++++---------- nanonext-1.8.0/nanonext/vignettes/v01-messaging.Rmd |only nanonext-1.8.0/nanonext/vignettes/v02-protocols.Rmd |only nanonext-1.8.0/nanonext/vignettes/v03-configuration.Rmd |only nanonext-1.8.0/nanonext/vignettes/v04-web.Rmd |only 72 files changed, 3151 insertions(+), 2238 deletions(-)
Title: Trellis Graphics for R
Description: A powerful and elegant high-level data visualization
system inspired by Trellis graphics, with an emphasis on
multivariate data. Lattice is sufficient for typical graphics needs,
and is also flexible enough to handle most nonstandard requirements.
See ?Lattice for an introduction.
Author: Deepayan Sarkar [aut, cre] ,
Felix Andrews [ctb],
Kevin Wright [ctb] ,
Neil Klepeis [ctb],
Johan Larsson [ctb] ,
Zhijian Wen [cph] ,
Paul Murrell [ctb],
Stefan Eng [ctb] ,
Achim Zeileis [ctb] ,
Alexandre Courtiol [ctb]
Maintainer: Deepayan Sarkar <deepayan.sarkar@r-project.org>
Diff between lattice versions 0.22-7 dated 2025-04-02 and 0.22-9 dated 2026-02-09
ChangeLog | 26 ++++ DESCRIPTION | 11 + MD5 | 165 +++++++++++++++-------------- R/axis.R | 171 ------------------------------- R/panels.R | 4 R/splom.R | 3 inst/doc/grid.pdf |binary inst/po/de/LC_MESSAGES/R-lattice.mo |binary inst/po/en@quot/LC_MESSAGES/R-lattice.mo |binary inst/po/fr/LC_MESSAGES/R-lattice.mo |binary inst/po/pl/LC_MESSAGES/R-lattice.mo |binary man/Lattice.Rd | 2 man/Rows.Rd | 2 man/USMortality.Rd | 2 man/axis.default.Rd | 2 man/banking.Rd | 2 man/barchart.table.Rd | 2 man/barley.Rd | 2 man/cloud.Rd | 2 man/draw.colorkey.Rd | 2 man/draw.key.Rd | 2 man/environmental.Rd | 2 man/ethanol.Rd | 2 man/figures |only man/histogram.Rd | 2 man/interaction.Rd | 2 man/lattice.options.Rd | 2 man/latticeParseFormula.Rd | 2 man/level.colors.Rd | 2 man/levelplot.Rd | 2 man/llines.Rd | 2 man/lset.Rd | 2 man/make.groups.Rd | 2 man/melanoma.Rd | 4 man/oneway.Rd | 2 man/packet.panel.default.Rd | 2 man/panel.axis.Rd | 2 man/panel.barchart.Rd | 2 man/panel.bwplot.Rd | 2 man/panel.cloud.Rd | 2 man/panel.densityplot.Rd | 2 man/panel.dotplot.Rd | 2 man/panel.functions.Rd | 2 man/panel.histogram.Rd | 2 man/panel.levelplot.Rd | 2 man/panel.loess.Rd | 2 man/panel.number.Rd | 2 man/panel.pairs.Rd | 2 man/panel.parallel.Rd | 2 man/panel.qqmath.Rd | 2 man/panel.qqmathline.Rd | 2 man/panel.smoothScatter.Rd | 2 man/panel.spline.Rd | 2 man/panel.stripplot.Rd | 2 man/panel.superpose.Rd | 2 man/panel.violin.Rd | 2 man/panel.xyplot.Rd | 2 man/prepanel.default.Rd | 2 man/prepanel.functions.Rd | 2 man/print.trellis.Rd | 2 man/qq.Rd | 2 man/qqmath.Rd | 2 man/rfs.Rd | 2 man/shingles.Rd | 2 man/simpleKey.Rd | 2 man/simpleTheme.Rd | 2 man/singer.Rd | 2 man/splom.Rd | 2 man/standard.theme.Rd | 2 man/strip.default.Rd | 2 man/tmd.Rd | 2 man/trellis.device.Rd | 2 man/trellis.object.Rd | 2 man/trellis.par.get.Rd | 2 man/update.trellis.Rd | 2 man/utilities.3d.Rd | 2 man/xyplot.Rd | 2 man/xyplot.ts.Rd | 2 po/R-de.po | 8 - po/R-fr.po | 8 - po/R-it.po | 5 po/R-ko.po | 5 po/R-lattice.pot | 7 - po/R-pl.po | 12 +- 84 files changed, 207 insertions(+), 352 deletions(-)
Title: Instrumental-Variables Regression by '2SLS', '2SM', or '2SMM',
with Diagnostics
Description: Instrumental variable estimation for linear models by two-stage least-squares (2SLS) regression or by robust-regression via M-estimation (2SM) or MM-estimation (2SMM). The main ivreg() model-fitting function is designed to provide a workflow as similar as possible to standard lm() regression. A wide range of methods is provided for fitted ivreg model objects, including extensive functionality for computing and graphing regression diagnostics in addition to other standard model tools.
Author: John Fox [aut] ,
Christian Kleiber [aut] ,
Achim Zeileis [aut, cre] ,
Nikolas Kuschnig [ctb] ,
R Core Team [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between ivreg versions 0.6-5 dated 2025-01-19 and 0.6-6 dated 2026-02-09
DESCRIPTION | 18 - MD5 | 37 +- NAMESPACE | 1 NEWS.md | 29 ++ R/ivreg.R | 12 R/ivreg.fit.R | 61 ++-- R/ivregDiagnostics.R | 3 R/ivregMethods.R | 14 - R/summary.ivreg.R | 10 build/vignette.rds |binary inst/doc/Diagnostics-for-2SLS-Regression.html | 49 +-- inst/doc/ivreg.R | 8 inst/doc/ivreg.html | 342 ++++++++++---------------- man/ivreg.Rd | 12 man/ivreg.fit.Rd | 2 man/ivregDiagnostics.Rd | 2 man/ivregMethods.Rd | 8 tests/testthat/test-alias.R |only tests/testthat/test-case-deletion.R | 13 tests/testthat/test-stage1.R | 4 20 files changed, 316 insertions(+), 309 deletions(-)
Title: Analysis of Spatial Stratified Heterogeneity
Description: Detecting spatial associations via spatial stratified heterogeneity, accounting for spatial dependencies, interpretability, complex interactions, and robust stratification. In addition, it supports the spatial stratified heterogeneity family described in Lv et al. (2025)<doi:10.1111/tgis.70032>.
Author: Wenbo Lv [aut, cre, cph] ,
Yangyang Lei [aut] ,
Fangmei Liu [aut] ,
Jianwu Yan [aut] ,
Yongze Song [aut] ,
Wufan Zhao [aut]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between gdverse versions 1.5.1 dated 2025-10-15 and 1.6 dated 2026-02-09
DESCRIPTION | 8 MD5 | 302 ++-- NAMESPACE | 158 +- NEWS.md | 20 R/data.R | 90 - R/gd.R | 176 +- R/gd_optunidisc.R | 172 +- R/gdverse-package.R | 8 R/geodetector.R | 1190 +++++++++--------- R/globals.R | 30 R/gozh.R | 463 +++---- R/idsa.R | 386 +++--- R/lesh.R | 378 ++--- R/loess_optscale.R | 78 - R/opgd.R | 264 ++-- R/pid_idsa.R | 426 +++--- R/psd_pseudop.R | 286 ++-- R/psd_spade.R | 402 +++--- R/r_interact_py.R | 14 R/rgd.R | 292 ++-- R/rid.R | 168 +- R/robustdisc.R | 92 - R/rpartdisc.R | 62 R/sesu_gozh.R | 378 ++--- R/sesu_opgd.R | 374 ++--- R/spade.R | 320 ++--- R/spd_lesh.R | 228 +-- R/srs_geodetecor.R | 742 +++++------ R/srsgd.R | 192 +-- R/utils.R | 182 +- R/zzz.R | 21 README.md | 4 build/vignette.rds |binary inst/CITATION | 25 inst/doc/gd.Rmd | 862 ++++++------- inst/doc/idsa.Rmd | 2 inst/doc/idsa.html | 2 inst/doc/opgd.Rmd | 432 +++--- inst/doc/opgd.html | 4 inst/doc/rgdrid.Rmd | 166 +- inst/doc/rgdrid.html | 12 inst/doc/sesu.Rmd | 1278 ++++++++++---------- inst/doc/sesu.html | 2 inst/doc/shegd.Rmd | 394 +++--- inst/doc/shegd.html | 42 inst/extdata/Depression.csv | 2146 +++++++++++++++++----------------- inst/python/cpd_disc.py | 106 - man/F_informationloss.Rd | 60 man/NTDs.Rd | 34 man/all2int.Rd | 44 man/cpsd_disc.Rd | 150 +- man/cpsd_spade.Rd | 88 - man/ecological_detector.Rd | 74 - man/factor_detector.Rd | 76 - man/figures/opgd/opgd_plot-1.png |binary man/figures/rgdrid/rgd_id-1.png |binary man/figures/rgdrid/rid_plot-1.png |binary man/gd.Rd | 92 - man/gd_optunidisc.Rd | 112 - man/gen_permutations.Rd | 46 man/geodetector.Rd | 122 - man/gozh.Rd | 102 - man/gozh_detector.Rd | 108 - man/idsa.Rd | 176 +- man/interaction_detector.Rd | 79 - man/lesh.Rd | 96 - man/loess_optscale.Rd | 94 - man/ndvi.Rd | 40 man/opgd.Rd | 144 +- man/pid_idsa.Rd | 74 - man/pipe.Rd | 30 man/plot.ecological_detector.Rd | 44 man/plot.factor_detector.Rd | 62 man/plot.gd_result.Rd | 44 man/plot.gozh_result.Rd | 44 man/plot.idsa_result.Rd | 44 man/plot.interaction_detector.Rd | 48 man/plot.lesh_result.Rd | 100 - man/plot.opgd_result.Rd | 44 man/plot.rgd_result.Rd | 58 man/plot.rid_result.Rd | 48 man/plot.risk_detector.Rd | 44 man/plot.sesu_gozh.Rd | 44 man/plot.sesu_opgd.Rd | 44 man/plot.spade_result.Rd | 60 man/plot.srs_ecological_detector.Rd | 44 man/plot.srs_factor_detector.Rd | 48 man/plot.srs_interaction_detector.Rd | 48 man/plot.srsgd_result.Rd | 44 man/print.ecological_detector.Rd | 44 man/print.factor_detector.Rd | 44 man/print.gd_result.Rd | 44 man/print.gozh_result.Rd | 44 man/print.idsa_result.Rd | 44 man/print.interaction_detector.Rd | 44 man/print.lesh_result.Rd | 44 man/print.opgd_result.Rd | 44 man/print.rgd_result.Rd | 44 man/print.rid_result.Rd | 44 man/print.risk_detector.Rd | 44 man/print.sesu_gozh.Rd | 44 man/print.sesu_opgd.Rd | 44 man/print.spade_result.Rd | 46 man/print.srs_ecological_detector.Rd | 44 man/print.srs_factor_detector.Rd | 44 man/print.srs_interaction_detector.Rd | 44 man/print.srsgd_result.Rd | 44 man/psd_iev.Rd | 80 - man/psd_pseudop.Rd | 92 - man/psd_spade.Rd | 80 - man/psmd_pseudop.Rd | 128 +- man/psmd_spade.Rd | 122 - man/rgd.Rd | 140 +- man/rid.Rd | 136 +- man/risk_detector.Rd | 58 man/robust_disc.Rd | 82 - man/rpart_disc.Rd | 72 - man/sesu_gozh.Rd | 178 +- man/sesu_opgd.Rd | 180 +- man/sim.Rd | 40 man/spade.Rd | 142 +- man/spd_lesh.Rd | 102 - man/srs_ecological_detector.Rd | 88 - man/srs_factor_detector.Rd | 78 - man/srs_geodetector.Rd | 92 - man/srs_interaction_detector.Rd | 92 - man/srs_table.Rd | 34 man/srs_wt.Rd | 34 man/srsgd.Rd | 112 - man/weight_assign.Rd | 52 src/RcppExports.cpp | 27 src/roughset.cpp | 117 - tests/testthat.R | 24 tests/testthat/test-data_type.R | 16 tests/testthat/test-geodetector.R | 14 tests/testthat/test-multicores.R | 18 tests/testthat/test-psd_spade.R | 12 tests/testthat/test-srs_geodetecor.R | 18 vignettes/consistency.Rmd.orig | 76 - vignettes/gd.Rmd | 862 ++++++------- vignettes/gd.Rmd.orig | 414 +++--- vignettes/idsa.Rmd | 2 vignettes/idsa.Rmd.orig | 108 - vignettes/opgd.Rmd | 432 +++--- vignettes/opgd.Rmd.orig | 162 +- vignettes/rgdrid.Rmd | 166 +- vignettes/rgdrid.Rmd.orig | 102 - vignettes/sesu.Rmd | 1278 ++++++++++---------- vignettes/sesu.Rmd.orig | 156 +- vignettes/shegd.Rmd | 394 +++--- vignettes/shegd.Rmd.orig | 192 +-- vignettes/spade.Rmd.orig | 218 +-- 152 files changed, 11999 insertions(+), 11949 deletions(-)
Title: Font Metrics and Font Management Utilities for R Graphics
Description: Compute text metrics (width, ascent, descent) using 'Cairo'
and 'FreeType', independently of the active graphic device. Font
lookup is delegated to 'systemfonts'. Additional utilities let users
register 'Google Fonts' or bundled 'Liberation' fonts, check font
availability, and assemble 'htmlDependency' objects so that fonts are
correctly embedded in 'Shiny' applications, 'R Markdown' documents,
and 'htmlwidgets' outputs such as 'ggiraph'.
Author: David Gohel [aut, cre],
Hadley Wickham [aut],
Lionel Henry [aut],
Jeroen Ooms [aut] ,
Yixuan Qiu [ctb],
R Core Team [cph] ,
ArData [cph],
RStudio [cph]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between gdtools versions 0.4.4 dated 2025-10-06 and 0.5.0 dated 2026-02-09
gdtools-0.4.4/gdtools/inst/include |only gdtools-0.4.4/gdtools/man/str_extents.Rd |only gdtools-0.4.4/gdtools/src/gdtools.cpp |only gdtools-0.4.4/gdtools/tests/testthat/test-str_extents.R |only gdtools-0.5.0/gdtools/DESCRIPTION | 22 - gdtools-0.5.0/gdtools/MD5 | 93 +++--- gdtools-0.5.0/gdtools/NAMESPACE | 8 gdtools-0.5.0/gdtools/NEWS.md | 31 ++ gdtools-0.5.0/gdtools/R/RcppExports.R | 20 - gdtools-0.5.0/gdtools/R/font-caching.R | 38 +- gdtools-0.5.0/gdtools/R/font_family_exists.R | 34 +- gdtools-0.5.0/gdtools/R/font_set.R |only gdtools-0.5.0/gdtools/R/fontconfig.R | 13 gdtools-0.5.0/gdtools/R/fonts.R | 44 ++- gdtools-0.5.0/gdtools/R/gdtools.R | 11 gdtools-0.5.0/gdtools/R/liberation.R | 85 ++++- gdtools-0.5.0/gdtools/R/str-metrics.R | 159 ++++++----- gdtools-0.5.0/gdtools/R/sysdata.rda |binary gdtools-0.5.0/gdtools/README.md | 185 +++++++++---- gdtools-0.5.0/gdtools/man/addGFontHtmlDependency.Rd | 2 gdtools-0.5.0/gdtools/man/dummy_setup.Rd | 9 gdtools-0.5.0/gdtools/man/font_family_exists.Rd | 12 gdtools-0.5.0/gdtools/man/font_google.Rd |only gdtools-0.5.0/gdtools/man/font_liberation.Rd |only gdtools-0.5.0/gdtools/man/font_set.Rd |only gdtools-0.5.0/gdtools/man/font_set_auto.Rd |only gdtools-0.5.0/gdtools/man/font_set_liberation.Rd |only gdtools-0.5.0/gdtools/man/fonts_cache_dir.Rd | 2 gdtools-0.5.0/gdtools/man/liberationmonoHtmlDependency.Rd | 2 gdtools-0.5.0/gdtools/man/liberationsansHtmlDependency.Rd | 2 gdtools-0.5.0/gdtools/man/liberationserifHtmlDependency.Rd | 2 gdtools-0.5.0/gdtools/man/m_str_extents.Rd | 23 + gdtools-0.5.0/gdtools/man/match_family.Rd | 5 gdtools-0.5.0/gdtools/man/register_gfont.Rd | 2 gdtools-0.5.0/gdtools/man/register_liberationmono.Rd | 14 gdtools-0.5.0/gdtools/man/register_liberationsans.Rd | 14 gdtools-0.5.0/gdtools/man/register_liberationserif.Rd | 14 gdtools-0.5.0/gdtools/man/str_metrics.Rd | 26 + gdtools-0.5.0/gdtools/man/strings_sizes.Rd | 22 + gdtools-0.5.0/gdtools/man/sys_fonts.Rd | 7 gdtools-0.5.0/gdtools/man/version_cairo.Rd | 12 gdtools-0.5.0/gdtools/src/CairoContext.cpp | 37 -- gdtools-0.5.0/gdtools/src/Makevars.in | 2 gdtools-0.5.0/gdtools/src/Makevars.win | 4 gdtools-0.5.0/gdtools/src/RcppExports.cpp | 162 ----------- gdtools-0.5.0/gdtools/src/font_metrics.cpp | 62 ++-- gdtools-0.5.0/gdtools/src/gdtools_types.h |only gdtools-0.5.0/gdtools/tests/testthat/helper-fontconfig.R | 8 gdtools-0.5.0/gdtools/tests/testthat/test-font-set.R |only gdtools-0.5.0/gdtools/tests/testthat/test-fonts.R | 33 ++ gdtools-0.5.0/gdtools/tests/testthat/test-str_metrics.R | 54 +++ gdtools-0.5.0/gdtools/tests/testthat/test-utils.R | 13 52 files changed, 772 insertions(+), 516 deletions(-)
Title: Evidence Accumulation Models
Description: Simulation-based evidence accumulation models for analyzing responses
and reaction times in single- and multi-response tasks. The package includes
simulation engines for five representative models: the Diffusion Decision
Model (DDM), Leaky Competing Accumulator (LCA), Linear Ballistic Accumulator
(LBA), Racing Diffusion Model (RDM), and Levy Flight Model (LFM), and
extends these frameworks to multi-response settings. The package supports
user-defined functions for item-level parameterization and the incorporation
of covariates, enabling flexible customization and the development of new
model variants based on existing architectures. Inference is performed using
simulation-based methods, including Approximate Bayesian Computation (ABC)
and Amortized Bayesian Inference (ABI), which allow parameter estimation
without requiring tractable likelihood functions. In addition to core
inference tools, the package provides modules for parameter recovery,
posterior predictive checks, and model com [...truncated...]
Author: Guangyu Zhu [aut] ,
Guang Yang [aut, cre]
Maintainer: Guang Yang <guang.spike.yang@gmail.com>
Diff between eam versions 1.0.1 dated 2026-01-17 and 1.1.0 dated 2026-02-09
eam-1.0.1/eam/README.md |only eam-1.1.0/eam/DESCRIPTION | 10 ++-- eam-1.1.0/eam/MD5 | 22 ++++++---- eam-1.1.0/eam/NAMESPACE | 1 eam-1.1.0/eam/NEWS.md |only eam-1.1.0/eam/R/abi_input.R |only eam-1.1.0/eam/R/plot_posterior_parameters.R | 54 ++++++++++++++++++------- eam-1.1.0/eam/R/plot_rt.R | 16 +++++-- eam-1.1.0/eam/R/simulation.R | 8 ++- eam-1.1.0/eam/R/summarise_by.R | 5 +- eam-1.1.0/eam/man/build_abi_input.Rd |only eam-1.1.0/eam/man/build_abi_input.Z.Rd |only eam-1.1.0/eam/man/build_abi_input.theta.Rd |only eam-1.1.0/eam/man/plot_posterior_parameters.Rd | 11 ++++- eam-1.1.0/eam/man/plot_rt.Rd | 6 ++ 15 files changed, 94 insertions(+), 39 deletions(-)
Title: Spatial Analysis with Misaligned Data Using Atom-Based
Regression Models
Description: Implements atom-based regression models (ABRM) for analyzing spatially
misaligned data. Provides functions for simulating misaligned spatial data,
preparing NIMBLE model inputs, running MCMC diagnostics, and comparing different
spatial analysis methods including dasymetric mapping. All main functions return
S3 objects with print(), summary(), and plot() methods for intuitive result exploration.
Methods are described in Nethery et al. (2023) <doi:10.1101/2023.01.10.23284410>.
Further methodological details and software implementation are described in Qian et al. (in review).
Author: Yunzhe Qian [aut, cre],
Rachel Nethery [aut],
Nancy Krieger [ctb] ,
Nykesha Johnson [ctb]
Maintainer: Yunzhe Qian <qyzanemos@gmail.com>
Diff between spatialAtomizeR versions 0.2.4 dated 2025-12-17 and 0.2.5 dated 2026-02-08
spatialAtomizeR-0.2.4/spatialAtomizeR/man/check_mcmc_diagnostics.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/create_comparison_plots.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/create_diagnostic_plots.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/create_sensitivity_summary_plots.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/create_summary_statistics.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/plot.abrm.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/plot.abrm_comparison.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/prepare_adjacency_matrices.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/prepare_nimble_inputs.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/prepare_spatial_bookkeeping.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/print.abrm.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/print.abrm_comparison.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/print.misaligned_data.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/print.sensitivity_analysis.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/print_convergence_summary.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/summary.abrm.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/summary.abrm_comparison.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/summary.misaligned_data.Rd |only spatialAtomizeR-0.2.4/spatialAtomizeR/man/summary.sensitivity_analysis.Rd |only spatialAtomizeR-0.2.5/spatialAtomizeR/DESCRIPTION | 8 spatialAtomizeR-0.2.5/spatialAtomizeR/MD5 | 40 spatialAtomizeR-0.2.5/spatialAtomizeR/NAMESPACE | 19 spatialAtomizeR-0.2.5/spatialAtomizeR/NEWS.md |only spatialAtomizeR-0.2.5/spatialAtomizeR/R/analysis.R | 1 spatialAtomizeR-0.2.5/spatialAtomizeR/R/diagnostics.R | 46 spatialAtomizeR-0.2.5/spatialAtomizeR/R/methods.R | 87 + spatialAtomizeR-0.2.5/spatialAtomizeR/R/preparation.R | 11 spatialAtomizeR-0.2.5/spatialAtomizeR/inst/doc/getting-started.R | 318 ++++- spatialAtomizeR-0.2.5/spatialAtomizeR/inst/doc/getting-started.Rmd | 457 ++++++-- spatialAtomizeR-0.2.5/spatialAtomizeR/inst/doc/getting-started.html | 553 ++++++---- spatialAtomizeR-0.2.5/spatialAtomizeR/vignettes/getting-started.Rmd | 457 ++++++-- 31 files changed, 1385 insertions(+), 612 deletions(-)
More information about spatialAtomizeR at CRAN
Permanent link
Title: Random Coefficient Minification Time Series Models
Description: Data sets, and functions for simulating and fitting nonlinear time series with minification and nonparametric models.
Author: L. Han [aut, cre]
Maintainer: L. Han <lengyi.han@ubc.ca>
Diff between RCMinification versions 1.2 dated 2023-01-17 and 1.4 dated 2026-02-08
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++++--------- R/rRCMT.R | 3 ++- data/AR1Typesim.rda |only data/AR1sim.rda |only data/BCfireArea.rda |binary data/BeerVolume.rda |binary data/FWI.rda |binary data/Globaltemps.rda |binary data/longitudinalAcceleration.rda |binary data/nickel.rda |binary man/AR1Typesim.Rd |only man/AR1sim.Rd |only man/nonlinearAR1.sim.Rd | 2 +- 14 files changed, 19 insertions(+), 14 deletions(-)
More information about RCMinification at CRAN
Permanent link
Title: Quality Control and Analysis of Massachusetts Water Quality Data
Description: Methods for quality control and exploratory analysis of surface
water quality data collected in Massachusetts, USA. Functions are developed
to facilitate data formatting for the Water Quality Exchange Network
<https://www.epa.gov/waterdata/water-quality-data-upload-wqx> and reporting
of data quality objectives to state agencies. Quality control methods are
from Massachusetts Department of Environmental Protection (2020)
<https://www.mass.gov/orgs/massachusetts-department-of-environmental-protection>.
Author: Marcus Beck [aut, cre] ,
Jill Carr [aut],
Ben Wetherill [aut]
Maintainer: Marcus Beck <mbeck@tbep.org>
Diff between MassWateR versions 2.2.0 dated 2025-05-29 and 2.2.1 dated 2026-02-08
DESCRIPTION | 12 - MD5 | 57 ++++---- NAMESPACE | 1 NEWS.md | 11 + R/anlzMWRdate.R | 2 R/anlzMWRmap.R | 87 ++++++++---- R/anlzMWRseason.R | 2 R/anlzMWRsite.R | 2 R/formMWRacc.R | 2 R/globalVariables.R | 2 R/readMWRresultsview.R | 2 R/utilMWRgetnhd.R |only man/anlzMWRmap.Rd | 10 + man/formMWRacc.Rd | 2 man/formMWRcens.Rd | 74 +++++----- man/readMWRacc.Rd | 60 ++++---- man/readMWRfrecom.Rd | 62 ++++---- man/readMWRsites.Rd | 56 +++---- man/utilMWRfiltersurface.Rd | 60 ++++---- man/utilMWRgetnhd.Rd |only man/utilMWRoutlier.Rd | 52 +++---- man/utilMWRsheet.Rd | 226 ++++++++++++++++---------------- man/utilMWRsumfun.Rd | 88 ++++++------ man/utilMWRsummary.Rd | 112 +++++++-------- man/utilMWRvaluerange.Rd | 62 ++++---- tests/testthat.R | 1 tests/testthat/helper-data.R | 1 tests/testthat/test-anlzMWRmap.R | 102 ++++++++++++++ tests/testthat/test-anlzMWRoutlierall.R | 123 +++++++++++++++-- tests/testthat/test-qcMWRreview.R | 154 +++++++++++++++++---- tests/testthat/test-utilMWRgetnhd.R |only 31 files changed, 887 insertions(+), 538 deletions(-)
Title: Bayesian Heteroskedastic Gaussian Processes
Description: Performs Bayesian posterior inference for heteroskedastic Gaussian processes.
Models are trained through MCMC including elliptical slice sampling (ESS) of
latent noise processes and Metropolis-Hastings sampling of
kernel hyperparameters. Replicates are handled efficientyly through a
Woodbury formulation of the joint likelihood for the mean and noise process
(Binois, M., Gramacy, R., Ludkovski, M. (2018) <doi:10.1080/10618600.2018.1458625>)
For large data, Vecchia-approximation for faster
computation is leveraged (Sauer, A., Cooper, A., and Gramacy, R.,
(2023), <doi:10.1080/10618600.2022.2129662>). Incorporates 'OpenMP' and
SNOW parallelization and utilizes 'C'/'C++' under the hood.
Author: Parul V. Patil [aut, cre]
Maintainer: Parul V. Patil <parulvijay@vt.edu>
Diff between bhetGP versions 1.0.1 dated 2025-07-18 and 1.0.2 dated 2026-02-08
DESCRIPTION | 6 - MD5 | 45 ++++--- R/SV.R | 20 ++- R/checks.R | 181 ++++++++++++++----------------- R/fit.R | 253 ++++++++++++++++++++++++++++++++++++++++---- R/functions.R | 56 +++++---- R/general.R | 46 ++++++-- R/gibbs.R | 19 +-- R/gibbs_vdims_N.R | 23 ++-- R/gibbs_vecchia.R | 66 +++++------ R/inits.R | 185 +++++++++++++++++++++----------- R/mcmc.R | 1 R/mcmc_vecchia.R | 32 ++--- R/plots.R | 94 ++++++++++------ R/predict.R | 295 ++++++++++++++++++++++++++++++++++++---------------- R/predict_vecchia.R | 256 +++++++++++++++++++++++++++++++++------------ R/trim.R | 2 README.md | 29 +++++ man/bhetGP.Rd | 8 - man/bhetGP_vdims.Rd |only man/bhomGP.Rd | 6 - man/predict.Rd | 8 - man/trim.Rd | 2 src/vecchia.cpp | 16 +- 24 files changed, 1124 insertions(+), 525 deletions(-)
Title: Numerical Standard Errors Computation in R
Description: Collection of functions designed to calculate numerical standard error (NSE) of univariate time series as described in Ardia et al. (2018) <doi:10.1515/jtse-2017-0011> and Ardia and Bluteau (2017) <doi:10.21105/joss.00172>.
Author: David Ardia [aut] ,
Keven Bluteau [aut, cre]
Maintainer: Keven Bluteau <keven.bluteau@usherbrooke.ca>
This is a re-admission after prior archival of version 1.21 dated 2022-11-10
Diff between nse versions 1.21 dated 2022-11-10 and 1.22 dated 2026-02-08
nse-1.21/nse/R/cos.basis.R |only nse-1.22/nse/DESCRIPTION | 17 +++++++------- nse-1.22/nse/MD5 | 26 ++++++++++----------- nse-1.22/nse/NEWS | 2 + nse-1.22/nse/R/cos_basis.R |only nse-1.22/nse/R/nse.R | 14 +++++------ nse-1.22/nse/build/partial.rdb |binary nse-1.22/nse/inst/CITATION | 47 ++++++++++++++++----------------------- nse-1.22/nse/man/nse.Rd | 2 - nse-1.22/nse/man/nse.andrews.Rd | 2 - nse-1.22/nse/man/nse.boot.Rd | 2 - nse-1.22/nse/man/nse.geyer.Rd | 2 - nse-1.22/nse/man/nse.hiruk.Rd | 4 +-- nse-1.22/nse/man/nse.nw.Rd | 2 - nse-1.22/nse/src/RcppExports.cpp | 5 ++++ 15 files changed, 63 insertions(+), 62 deletions(-)
Title: Camera Trap Data Management and Analysis Framework
Description: Management and analysis of camera trap wildlife data through
an integrated workflow. Provides functions for image/video
organization and metadata extraction, species/individual
identification. Creates detection histories for occupancy and spatial
capture-recapture analyses, with support for multi-season studies.
Includes tools for fitting community occupancy models in JAGS and
NIMBLE, and an interactive dashboard for survey data visualization and
analysis. Features visualization of species distributions and activity
patterns, plus export capabilities for GIS and reports. Emphasizes
automation and reproducibility while maintaining flexibility for
different study designs.
Author: Juergen Niedballa [aut, cre] ,
Alexandre Courtiol [aut] ,
Rahel Sollmann [aut] ,
John Mathai [ctb],
Seth Timothy Wong [ctb] ,
An The Truong Nguyen [ctb] ,
Azlan bin Mohamed [ctb] ,
Andrew Tilker [ctb] ,
Roshan Guharajan [ctb] ,
Ioannis Alexiou [ctb] [...truncated...]
Maintainer: Juergen Niedballa <camtrapr@gmail.com>
Diff between camtrapR versions 3.0.2 dated 2026-01-25 and 3.0.3 dated 2026-02-08
DESCRIPTION | 8 MD5 | 25 - NEWS.md | 9 R/aggregateStations.R | 8 R/fixDateTimeOriginal.R | 1 R/plot.R | 2 R/predict.R | 146 +++---- R/surveyDashboard.R | 813 +++++++++++++++++++++++----------------- R/variousOtherHelperFunctions.R | 100 ++++ README.md | 1 inst/doc/camtrapr1.pdf |binary man/aggregateStations.Rd | 5 man/dot-check_memory_usage.Rd |only man/fixDateTimeOriginal.Rd | 1 14 files changed, 687 insertions(+), 432 deletions(-)
Title: Variational Autoencoders for Heterogeneous Tabular Data
Description: Build and train a variational autoencoder (VAE) for mixed-type
tabular data (continuous, binary, categorical).
Models are implemented using 'TensorFlow' and 'Keras' via the 'reticulate'
interface, enabling reproducible VAE training for heterogeneous tabular
datasets.
Author: Sarah Milligan [aut, cre]
Maintainer: Sarah Milligan <slm1999@bu.edu>
Diff between autotab versions 0.1.2 dated 2026-02-06 and 0.1.3 dated 2026-02-08
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/extracting_distribution.R | 4 ++-- R/loss.R | 24 +++++++++++++++--------- man/extracting_distribution.Rd | 2 +- man/feat_reorder.Rd | 2 +- 6 files changed, 27 insertions(+), 21 deletions(-)
Title: Forest Mensuration and Management
Description: Processing forest inventory data with methods such as simple random sampling, stratified random sampling and systematic sampling. There are also functions for yield and growth predictions and model fitting, linear and nonlinear grouped data fitting, and statistical tests. References: Kershaw Jr., Ducey, Beers and Husch (2016). <doi:10.1002/9781118902028>.
Author: Sollano Rabelo Braga [aut, cre, cph],
Marcio Leles Romarco de Oliveira [aut],
Eric Bastos Gorgens [aut]
Maintainer: Sollano Rabelo Braga <sollanorb@gmail.com>
Diff between forestmangr versions 0.9.8 dated 2024-12-01 and 0.9.9 dated 2026-02-08
DESCRIPTION | 10 +++++----- MD5 | 34 +++++++++++++++++----------------- NEWS.md | 3 +++ R/huberwb.R | 2 +- R/huberwob.R | 2 +- build/vignette.rds |binary inst/doc/eq_group_fit_en.html | 9 +++++---- inst/doc/eq_group_fit_ptbr.html | 9 +++++---- inst/doc/invent_vol_plot_en.html | 7 ++++--- inst/doc/invent_vol_plot_ptbr.html | 7 ++++--- inst/doc/phyto_ana_en.html | 7 ++++--- inst/doc/phyto_ana_ptbr.html | 7 ++++--- inst/doc/sampling_en.html | 5 +++-- inst/doc/sampling_ptbr.html | 5 +++-- inst/doc/volume_est_en.html | 9 +++++---- inst/doc/volume_est_ptbr.html | 9 +++++---- inst/doc/yield_growth_en.html | 7 ++++--- inst/doc/yield_growth_ptbr.html | 7 ++++--- 18 files changed, 77 insertions(+), 62 deletions(-)
Title: R Data Science Supporting Rattle
Description: The R Analytic Tool To Learn Easily (Rattle) provides a
collection of utilities functions for the data scientist. This
package (v5.6.0) supports the companion graphical interface with
the aim to provide a simple and intuitive introduction to R
for data science, allowing a user to quickly load data from a CSV file
transform and explore the data, and to build and evaluate models.
A key aspect of the GUI is that all R commands are logged and
commented through the log tab.
This can be saved as a standalone R script file and as
an aid for the user to
learn R or to copy-and-paste directly into R itself. If you
want to use the older Rattle implementing the GUI in RGtk2
(which is no longer available from CRAN) then please install
the Rattle package v5.5.1.
See rattle.togaware.com for instructions on installing
the modern Rattle graphical user interface.
Author: Graham Williams [aut, cph, cre],
Mark Vere Culp [cph],
Ed Cox [ctb],
Anthony Nolan [ctb],
Denis White [cph],
Daniele Medri [ctb],
Akbar Waljee [ctb] ,
Brian Ripley [cph] ,
Jose Magana [ctb] ,
Surendra Tipparaju [ctb] ,
Durga Prasad Chappidi [ctb] ,
D [...truncated...]
Maintainer: Graham Williams <Graham.Williams@togaware.com>
Diff between rattle versions 5.5.1 dated 2022-03-21 and 5.6.2 dated 2026-02-08
rattle-5.5.1/rattle/inst/extdata |only rattle-5.6.2/rattle/DESCRIPTION | 68 rattle-5.6.2/rattle/MD5 | 128 rattle-5.6.2/rattle/R/associate.R | 118 rattle-5.6.2/rattle/R/data.R | 1455 ---------- rattle-5.6.2/rattle/R/evaluate.R | 604 ---- rattle-5.6.2/rattle/R/executeBoxPlot2.R | 6 rattle-5.6.2/rattle/R/explore.R | 634 ++-- rattle-5.6.2/rattle/R/export.R | 195 - rattle-5.6.2/rattle/R/hclust.R | 204 - rattle-5.6.2/rattle/R/kmeans.R | 75 rattle-5.6.2/rattle/R/log.R | 116 rattle-5.6.2/rattle/R/model.R | 178 - rattle-5.6.2/rattle/R/projects.R | 526 --- rattle-5.6.2/rattle/R/rattle.R | 1989 --------------- rattle-5.6.2/rattle/R/rattleng.R |only rattle-5.6.2/rattle/R/survival.R | 33 rattle-5.6.2/rattle/R/textview.R | 19 rattle-5.6.2/rattle/R/zzz.R | 63 rattle-5.6.2/rattle/build/vignette.rds |binary rattle-5.6.2/rattle/data/locationsAUS.RData |binary rattle-5.6.2/rattle/data/weather.RData |binary rattle-5.6.2/rattle/data/weatherAUS.RData |binary rattle-5.6.2/rattle/inst/CITATION | 28 rattle-5.6.2/rattle/inst/NEWS | 24 rattle-5.6.2/rattle/inst/doc/rattle.R | 11 rattle-5.6.2/rattle/inst/doc/rattle.Rnw | 76 rattle-5.6.2/rattle/inst/doc/rattle.pdf |binary rattle-5.6.2/rattle/inst/etc/rattle.ui | 2 rattle-5.6.2/rattle/man/acquireAuditData.Rd | 6 rattle-5.6.2/rattle/man/asRules.Rd | 2 rattle-5.6.2/rattle/man/asRules.rpart.Rd | 2 rattle-5.6.2/rattle/man/binning.Rd | 2 rattle-5.6.2/rattle/man/calcInitialDigitDistr.Rd | 2 rattle-5.6.2/rattle/man/calculateAUC.Rd | 2 rattle-5.6.2/rattle/man/centers.hclust.Rd | 2 rattle-5.6.2/rattle/man/comcat.Rd | 2 rattle-5.6.2/rattle/man/drawTreeNodes.Rd | 2 rattle-5.6.2/rattle/man/drawTreesAda.Rd | 2 rattle-5.6.2/rattle/man/errorMatrix.Rd | 2 rattle-5.6.2/rattle/man/evaluateRisk.Rd | 2 rattle-5.6.2/rattle/man/fancyRpartPlot.Rd | 2 rattle-5.6.2/rattle/man/find_fewest_levels.Rd |only rattle-5.6.2/rattle/man/genPlotTitleCmd.Rd | 2 rattle-5.6.2/rattle/man/ggVarImp.Rd | 2 rattle-5.6.2/rattle/man/grouper.Rd | 2 rattle-5.6.2/rattle/man/internal.Rd | 2 rattle-5.6.2/rattle/man/listAdaVarsUsed.Rd | 2 rattle-5.6.2/rattle/man/listTreesAda.Rd | 2 rattle-5.6.2/rattle/man/meta_data.Rd |only rattle-5.6.2/rattle/man/plotOptimalLine.Rd | 2 rattle-5.6.2/rattle/man/plotRisk.Rd | 2 rattle-5.6.2/rattle/man/printRandomForests.Rd | 2 rattle-5.6.2/rattle/man/randomForest2Rules.Rd | 2 rattle-5.6.2/rattle/man/rattle.Rd | 22 rattle-5.6.2/rattle/man/rattle.print.summary.multinom.Rd | 2 rattle-5.6.2/rattle/man/rattleInfo.Rd | 2 rattle-5.6.2/rattle/man/riskchart.Rd | 2 rattle-5.6.2/rattle/man/savePlotToFile.Rd | 2 rattle-5.6.2/rattle/man/setupDataset.Rd | 2 rattle-5.6.2/rattle/man/theme_rattle.Rd |only rattle-5.6.2/rattle/man/treeset.randomForest.Rd | 2 rattle-5.6.2/rattle/man/unique_columns.Rd |only rattle-5.6.2/rattle/man/weather.Rd | 25 rattle-5.6.2/rattle/man/weatherAUS.Rd | 32 rattle-5.6.2/rattle/man/whichNumerics.Rd | 2 rattle-5.6.2/rattle/man/wine.Rd | 42 rattle-5.6.2/rattle/vignettes/rattle.Rnw | 76 68 files changed, 968 insertions(+), 5845 deletions(-)
Title: Waffle Style Chart with a Brick Layout in 'ggplot2'
Description: A new take on the bar chart. Similar to a waffle style chart but
instead of squares the layout resembles a brick wall.
Author: Daniel Oehm [aut, cre]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between ggbrick versions 0.3.1 dated 2025-09-14 and 0.3.2 dated 2026-02-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 6 ++---- R/geom-brick.R | 2 +- 4 files changed, 9 insertions(+), 11 deletions(-)
Title: Assess Study Cohorts Using a Common Data Model
Description: Phenotype study cohorts in data mapped to the
Observational Medical Outcomes Partnership Common Data Model. Diagnostics
are run at the database, code list, cohort, and population level to assess
whether study cohorts are ready for research.
Author: Edward Burn [aut, cre] ,
Marti Catala [aut] ,
Xihang Chen [aut] ,
Marta Alcalde-Herraiz [aut] ,
Nuria Mercade-Besora [aut] ,
Albert Prats-Uribe [aut]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between PhenotypeR versions 0.3.1 dated 2026-01-28 and 0.3.2 dated 2026-02-08
PhenotypeR-0.3.1/PhenotypeR/R/utils-pipe.R |only PhenotypeR-0.3.1/PhenotypeR/inst/shiny/data/appData.RData |only PhenotypeR-0.3.1/PhenotypeR/inst/shiny/data/raw/results.csv |only PhenotypeR-0.3.1/PhenotypeR/man/pipe.Rd |only PhenotypeR-0.3.2/PhenotypeR/DESCRIPTION | 36 PhenotypeR-0.3.2/PhenotypeR/MD5 | 51 PhenotypeR-0.3.2/PhenotypeR/NAMESPACE | 2 PhenotypeR-0.3.2/PhenotypeR/R/codelistDiagnostics.R | 36 PhenotypeR-0.3.2/PhenotypeR/R/cohortDiagnostics.R | 4 PhenotypeR-0.3.2/PhenotypeR/R/drugDiagnostics.R |only PhenotypeR-0.3.2/PhenotypeR/R/getCohortExpectations.R | 6 PhenotypeR-0.3.2/PhenotypeR/R/utilities.R |only PhenotypeR-0.3.2/PhenotypeR/inst/doc/CodelistDiagnostics.html | 726 ++-- PhenotypeR-0.3.2/PhenotypeR/inst/doc/DatabaseDiagnostics.html | 1752 ++-------- PhenotypeR-0.3.2/PhenotypeR/inst/doc/PhenotypeExpectations.html | 24 PhenotypeR-0.3.2/PhenotypeR/inst/doc/PopulationDiagnostics.html | 220 - PhenotypeR-0.3.2/PhenotypeR/inst/doc/ShinyDiagnostics.R | 37 PhenotypeR-0.3.2/PhenotypeR/inst/doc/ShinyDiagnostics.Rmd | 104 PhenotypeR-0.3.2/PhenotypeR/inst/doc/ShinyDiagnostics.html | 85 PhenotypeR-0.3.2/PhenotypeR/inst/shiny/global.R | 5 PhenotypeR-0.3.2/PhenotypeR/inst/shiny/server.R | 60 PhenotypeR-0.3.2/PhenotypeR/man/PhenotypeR-package.Rd | 2 PhenotypeR-0.3.2/PhenotypeR/tests/testthat/test-drugDiagnostics.R |only PhenotypeR-0.3.2/PhenotypeR/vignettes/ShinyDiagnostics.Rmd | 104 PhenotypeR-0.3.2/PhenotypeR/vignettes/ShinyDiagnosticsFigures |only 25 files changed, 1231 insertions(+), 2023 deletions(-)
More information about QuantileOnQuantile at CRAN
Permanent link
Title: 'HiGHS' Optimization Solver
Description: R interface to 'HiGHS', an optimization solver for solving mixed integer
optimization problems with quadratic or linear objective and linear constraints.
Author: Florian Schwendinger [aut, cre],
Dirk Schumacher [aut],
Julian Hall [cph],
Ivet Galabova [cph],
Leona Gottwald [cph],
Michael Feldmeier [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between highs versions 1.12.0-2 dated 2026-02-03 and 1.12.0-3 dated 2026-02-08
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/build_highs.sh | 10 +++++++--- 3 files changed, 12 insertions(+), 8 deletions(-)
Title: Functions to Simplify the Use of 'glmnet' for Machine Learning
Description: Provides several functions to simplify using the 'glmnet' package: converting data frames into matrices ready for 'glmnet'; b) imputing missing variables multiple times; c) fitting and applying prediction models straightforwardly; d) assigning observations to folds in a balanced way; e) cross-validate the models; f) selecting the most representative model across imputations and folds; and g) getting the relevance of the model regressors; as described in several publications: Solanes et al. (2022) <doi:10.1038/s41537-022-00309-w>, Palau et al. (2023) <doi:10.1016/j.rpsm.2023.01.001>, Salazar de Pablo et al. (2025) <doi:10.1038/s41380-025-03244-1>.
Author: Joaquim Radua [aut, cre]
Maintainer: Joaquim Radua <quimradua@gmail.com>
This is a re-admission after prior archival of version 1.0 dated 2024-09-11
Diff between easy.glmnet versions 1.0 dated 2024-09-11 and 1.1 dated 2026-02-08
DESCRIPTION | 13 - MD5 | 19 +- NAMESPACE | 5 NEWS |only R/source.R | 294 ++++++++++++++++++++++++-------------- man/assign.folds.Rd | 2 man/cv.Rd | 6 man/glmnet_fit.Rd | 6 man/glmnet_get.items.relevance.Rd | 4 man/impute.glmnet.matrix.Rd | 6 man/surv2binary.Rd | 8 - 11 files changed, 237 insertions(+), 126 deletions(-)
Title: 'R' Bindings to the 'C' Grammar for Tree-Sitter
Description: Provides bindings to a 'C' grammar for Tree-sitter, to be used
alongside the 'treesitter' package. Tree-sitter builds concrete syntax trees
for source files and can efficiently update them or generate code like producing
R C API wrappers from C functions, structs and global definitions from header files.
Author: Sounkou Mahamane Toure [aut, cre],
Tree-sitter authors [cph] ,
Eli Bendersky and Co-authors [cph]
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>
Diff between treesitter.c versions 0.0.1 dated 2025-12-10 and 0.0.4.2 dated 2026-02-08
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Title: Cell Type Annotation Using Large Language Models
Description: Automated cell type annotation for single-cell RNA sequencing data
using consensus predictions from multiple large language models. Integrates
with Seurat objects and provides uncertainty quantification for annotations.
Supports various LLM providers including OpenAI, Anthropic, and Google.
For details see Yang et al. (2025) <doi:10.1101/2025.04.10.647852>.
Author: Chen Yang [aut, cre, cph]
Maintainer: Chen Yang <cafferychen777@tamu.edu>
Diff between mLLMCelltype versions 1.3.2 dated 2025-09-02 and 2.0.0 dated 2026-02-08
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Title: Three Dimensional High Throughput 'GoMiner'
Description: The Gene Ontology (GO) Consortium <https://geneontology.org/> organizes genes
into hierarchical categories based on biological process (BP), molecular function (MF) and
cellular component (CC, i.e., subcellular localization). Tools such as 'GoMiner' (see Zeeberg, B.R.,
Feng, W., Wang, G. et al. (2003) <doi:10.1186/gb-2003-4-4-r28>) can leverage GO to perform
ontological analysis of microarray and proteomics studies, typically generating a list of
significant functional categories. To capture the benefit of all three ontologies,
I developed 'HTGM3D', a three-dimensional version of 'GoMiner'.
Author: Barry Zeeberg [aut, cre]
Maintainer: Barry Zeeberg <barryz2013@gmail.com>
This is a re-admission after prior archival of version 1.0 dated 2025-05-30
Diff between HTGM3D versions 1.0 dated 2025-05-30 and 1.0.1 dated 2026-02-08
DESCRIPTION | 12 +++--- MD5 | 27 +++++++------- NAMESPACE | 2 + R/HTGM3D.R | 78 ++++++++++++++++++++++++++++++------------ build/vignette.rds |binary data/Housekeeping_Genes.RData |binary data/cluster52.RData |binary data/x_cg.RData |binary data/x_l.RData |binary data/x_m11.RData |binary data/x_mat.RData |binary data/x_mat3d.RData |binary inst/doc/HTGM3D.html | 4 +- man/interactWithGraph3D.Rd | 2 - man/whichOS.Rd |only 15 files changed, 81 insertions(+), 44 deletions(-)
Title: A Super K-Nearest Neighbor (SKNN) Classification Algorithm
Description: It's a Super K-Nearest Neighbor(SKNN) classification method with using kernel density to describe weight of the distance between a training observation and the testing sample. Comparison of performance between SKNN and KNN shows that SKNN is significantly superior to KNN.
Author: Yarong Yang [aut, cre],
Nader Ebrahimi [ctb],
Yoram Rubin [ctb],
Jacob Zhang [ctb]
Maintainer: Yarong Yang <Yi.YA_yaya@hotmail.com>
Diff between SKNN versions 4.1.2 dated 2025-09-18 and 4.1.3 dated 2026-02-08
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/SKNN.R | 38 +++++++++++++++++++++++++++++--------- man/SKNN-package.Rd | 6 +++--- man/SKNN.Rd | 7 ++++--- 5 files changed, 44 insertions(+), 23 deletions(-)
Title: Extract Matching Lines from Matching Files
Description: Provides a simple interface to recursively list files from a
directory, filter them using a regular expression, read their
contents, and extract lines that match a user-defined pattern. The
package returns a dataframe containing the matched lines, their
line numbers, file paths, and the corresponding matched substrings.
Designed for quick code base exploration, log inspection, or any use
case involving pattern-based file and line filtering.
Author: Sacha Martingay [aut, cre, cph]
Maintainer: Sacha Martingay <martingay.sacha@hotmail.com>
Diff between seekr versions 0.1.3 dated 2025-05-10 and 0.1.4 dated 2026-02-08
seekr-0.1.3/seekr/R/test_wclass.R |only seekr-0.1.4/seekr/DESCRIPTION | 6 seekr-0.1.4/seekr/LICENSE | 4 seekr-0.1.4/seekr/MD5 | 37 +- seekr-0.1.4/seekr/NEWS.md | 36 +- seekr-0.1.4/seekr/R/aaa.R | 20 - seekr-0.1.4/seekr/R/seekr-package.R | 14 seekr-0.1.4/seekr/R/zzz.R | 24 - seekr-0.1.4/seekr/man/assert_flag_or_scalar_integerish.Rd | 40 +- seekr-0.1.4/seekr/man/check_flag_or_scalar_integerish.Rd | 38 +- seekr-0.1.4/seekr/man/figures/lifecycle-deprecated.svg | 42 +- seekr-0.1.4/seekr/man/figures/lifecycle-experimental.svg | 42 +- seekr-0.1.4/seekr/man/figures/lifecycle-stable.svg | 58 +-- seekr-0.1.4/seekr/man/figures/lifecycle-superseded.svg | 42 +- seekr-0.1.4/seekr/man/has_null_bytes.Rd | 48 +- seekr-0.1.4/seekr/man/print_cli.Rd | 52 +-- seekr-0.1.4/seekr/tests/testthat.R | 24 - seekr-0.1.4/seekr/tests/testthat/test-checkmate-extension.R | 68 ++-- seekr-0.1.4/seekr/tests/testthat/test-list-files.R | 132 ++++---- seekr-0.1.4/seekr/tests/testthat/test-read-filter-lines.R | 194 +++++------- 20 files changed, 451 insertions(+), 470 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-07 0.10.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-04 0.6.0
2024-07-29 0.5.9
2024-03-28 0.5.8
2023-03-10 0.5.7
2023-01-31 0.5.6
2022-10-31 0.5.5
2022-08-06 0.5.4
2022-06-07 0.5.3
2022-05-18 0.5.2
2022-03-11 0.5.1
2022-01-26 0.5.0
2021-09-14 0.4.2
2021-08-04 0.4.1
2021-07-31 0.4.0
2021-06-07 0.3.0
2021-04-19 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-14 2.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-13 0.1.3
2021-07-26 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-29 0.4.0
2018-10-19 0.3.0
2017-12-21 0.2.0
2017-05-05 0.1.4
2017-04-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-12-19 0.1.2
2022-09-22 0.1.1
2022-09-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-12-15 0.5.5
2023-01-18 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-27 0.2.6
2026-01-19 0.2.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-16 1.0.0
2017-04-28 0.1.1
2017-01-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-21 0.2.0
2021-09-10 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-12-21 0.6.0
2025-10-19 0.2.2
2025-10-17 0.2.1
2025-10-16 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-16 2.3.3
2021-07-12 2.3.1
2021-07-05 2.2.0
2021-05-25 2.1.5
2017-09-22 1.4.0
2017-05-17 1.3.0
2017-02-05 1.2.0
2016-06-13 1.1.0
2016-01-14 1.0.1
2015-06-01 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-27 0.0.148
Title: Update and Manipulate Rd Documentation Objects
Description: Functions for manipulation of R documentation objects,
including functions reprompt() and ereprompt() for updating 'Rd'
documentation for functions, methods and classes; 'Rd' macros for
citations and import of references from 'bibtex' files for use in
'Rd' files and 'roxygen2' comments; 'Rd' macros for evaluating and
inserting snippets of 'R' code and the results of its evaluation or
creating graphics on the fly; and many functions for manipulation of
references and Rd files.
Author: Georgi N. Boshnakov [aut, cre] ,
Duncan Murdoch [ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Rdpack versions 2.6.5 dated 2026-01-23 and 2.6.6 dated 2026-02-08
DESCRIPTION | 6 - MD5 | 12 +- NEWS.md | 6 + R/runexamples.R | 91 +++++++++++++----- build/partial.rdb |binary inst/doc/Inserting_bibtex_references.pdf |binary inst/doc/Inserting_figures_and_evaluated_examples.pdf |binary 7 files changed, 83 insertions(+), 32 deletions(-)
Title: Extension Types for Spatial Data for Use with 'Arrow'
Description: Provides extension types and conversions to between R-native
object types and 'Arrow' columnar types. This includes integration among
the 'arrow', 'nanoarrow', 'sf', and 'wk' packages such that spatial
metadata is preserved wherever possible. Extension type implementations
ensure first-class geometry data type support in the 'arrow' and 'nanoarrow'
packages.
Author: Dewey Dunnington [aut, cre] ,
Anthony North [ctb],
Apache Software Foundation [cph],
Ulf Adams [cph],
Daniel Lemire [cph],
Joao Paulo Magalhaes [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between geoarrow versions 0.4.1 dated 2025-11-19 and 0.4.2 dated 2026-02-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ R/pkg-nanoarrow.R | 2 +- 4 files changed, 12 insertions(+), 7 deletions(-)
Title: Autoregressive Integrated Moving Average (ARIMA) Based
Disaggregation Methods
Description: We have the code for
disaggregation as found in Wei and Stram
(1990, <doi:10.1111/j.2517-6161.1990.tb01799.x>),
and Hodgess and Wei (1996, "Temporal Disaggregation of Time
Series" in Statistical Science I, Nova Publishing). The disaggregation models have different orders
of the moving average component. These are based on ARIMA
models rather than differencing or using similar time series.
Author: Erin Hodgess [aut, cre]
Maintainer: Erin Hodgess <erinm.hodgess@gmail.com>
Diff between disagmethod versions 0.1.0 dated 2026-01-30 and 0.1.1 dated 2026-02-08
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/lower3.R | 49 +++++++++++++++++++++++++++++++++++++++++++------ 3 files changed, 48 insertions(+), 11 deletions(-)
Title: Constrained Generalized Additive Model
Description: A constrained generalized additive model is fitted by the cgam routine. Given a set of predictors, each of which may have a shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The ShapeSelect routine chooses a subset of predictor variables and describes the component relationships with the response. For each predictor, the user needs only specify a set of possible shape or order restrictions. A model selection method chooses the shapes and orderings of the relationships as well as the variables. The cone information criterion (CIC) is used to select the best combination of variables and shapes. A genetic algorithm may be used when the set of possible models is large. In addition, the cgam routine implements a two-dimensional isotonic regression using warped-plane splines without additivity assumptions. It can also fit a convex or concave regression surface with [...truncated...]
Author: Mary Meyer [aut],
Xiyue Liao [aut, cre]
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between cgam versions 1.30 dated 2026-01-16 and 1.31 dated 2026-02-08
ChangeLog | 7 + DESCRIPTION | 10 +- MD5 | 14 +-- NAMESPACE | 1 R/cgam.R | 33 ++++++++ R/cgamm.R | 209 +++++++++++++++++++++++++++++++++++++++++++++++++++++--- man/COforest.Rd | 4 - man/cgamm.Rd | 2 8 files changed, 254 insertions(+), 26 deletions(-)
Title: Likelihood Ratio Tests and Confidence Intervals
Description: A collection of hypothesis tests and confidence intervals based on the likelihood ratio
<https://en.wikipedia.org/wiki/Likelihood-ratio_test>.
Author: Greg McMahan [aut, cre]
Maintainer: Greg McMahan <gmcmacran@gmail.com>
Diff between LRTesteR versions 1.3.0 dated 2025-05-24 and 1.3.1 dated 2026-02-07
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 3 +++ README.md | 8 ++++---- build/vignette.rds |binary inst/doc/Analysis_of_Deviance.html | 5 +++-- inst/doc/Nonparametric_Tests.html | 5 +++-- tests/testthat/test_poisson_tests.R | 1 - 8 files changed, 24 insertions(+), 20 deletions(-)
Title: Fit Log-Ratio Lasso Regression for Compositional Data
Description: Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.
Author: Teng Fei [aut, cre, cph] ,
Tyler Funnell [aut] ,
Nicholas Waters [aut] ,
Sandeep Raj [aut]
Maintainer: Teng Fei <feit1@mskcc.org>
Diff between FLORAL versions 0.6.0 dated 2025-11-21 and 0.7.0 dated 2026-02-07
DESCRIPTION | 14 +- MD5 | 17 +- NAMESPACE | 2 NEWS.md | 6 R/FLORAL.R | 5 R/LogRatioCoxLasso.R | 2 R/concordance.R |only R/simu.R | 1 R/utils.R | 5 inst/doc/Using-FLORAL-for-Microbiome-Analysis.html | 136 +++++++++------------ 10 files changed, 91 insertions(+), 97 deletions(-)
Title: Shiny Application for Latent Structure Analysis with a Graphical
User Interface
Description: Provides an interactive Shiny-based toolkit for conducting latent structure analyses, including Latent Profile Analysis (LPA), Latent Class Analysis (LCA), Latent Trait Analysis (LTA/IRT), Exploratory Factor Analysis (EFA), Confirmatory Factor Analysis (CFA), and Structural Equation Modeling (SEM). The implementation is grounded in established methodological frameworks: LPA is supported through 'tidyLPA' (Rosenberg et al., 2018) <doi:10.21105/joss.00978>, LCA through 'poLCA' (Linzer & Lewis, 2011) <doi:10.32614/CRAN.package.poLCA> & 'glca' (Kim & Kim, 2024) <doi:10.32614/CRAN.package.glca>, LTA/IRT via 'mirt' (Chalmers, 2012) <doi:10.18637/jss.v048.i06>, and EFA via 'psych' (Revelle, 2025). SEM and CFA functionalities build upon the 'lavaan' framework (Rosseel, 2012) <doi:10.18637/jss.v048.i02>. Users can upload datasets or use built-in examples, fit models, compare fit indices, visualize results, and export outputs without programming.
Author: Hasan Djidu [aut, cre] ,
Heri Retnawati [ctb] ,
Samsul Hadi [ctb] ,
Haryanto [ctb]
Maintainer: Hasan Djidu <hasandjidu@gmail.com>
Diff between projectLSA versions 0.0.7 dated 2026-01-30 and 0.0.8 dated 2026-02-07
projectLSA-0.0.7/projectLSA/inst/app/rsconnect |only projectLSA-0.0.8/projectLSA/DESCRIPTION | 11 - projectLSA-0.0.8/projectLSA/MD5 | 13 - projectLSA-0.0.8/projectLSA/NEWS.md | 10 + projectLSA-0.0.8/projectLSA/README.md | 10 + projectLSA-0.0.8/projectLSA/inst/app/app.R | 2 projectLSA-0.0.8/projectLSA/inst/app/serverCFA.R | 170 ++++++++++++++++++----- projectLSA-0.0.8/projectLSA/inst/app/styleCSS.R | 9 - 8 files changed, 169 insertions(+), 56 deletions(-)
Title: An Implementation of 'Interactive Brokers' API
Description: Allows interaction with 'Interactive Brokers' 'Trader Workstation'
<https://interactivebrokers.github.io/tws-api/>.
Handles the connection over the network and the exchange of messages.
Data is encoded and decoded between user and wire formats.
Data structures and functionality closely mirror the official implementations.
Author: Luca Billi [aut, cre]
Maintainer: Luca Billi <noreply.section+dev@gmail.com>
Diff between rib versions 0.25.3 dated 2025-02-10 and 0.30.4 dated 2026-02-07
rib-0.25.3/rib/R/Decoder.R |only rib-0.25.3/rib/R/tagvalue.R |only rib-0.25.3/rib/R/utils.R |only rib-0.25.3/rib/R/validate.R |only rib-0.25.3/rib/inst/data-raw |only rib-0.30.4/rib/DESCRIPTION | 8 rib-0.30.4/rib/MD5 | 58 +- rib-0.30.4/rib/NAMESPACE | 2 rib-0.30.4/rib/NEWS.md | 6 rib-0.30.4/rib/R/IBClient.R | 935 ++++++++++++++---------------------------- rib-0.30.4/rib/R/IBWrap.R | 60 +- rib-0.30.4/rib/R/codes.R | 230 +++++----- rib-0.30.4/rib/R/constants.R | 27 - rib-0.30.4/rib/R/decode.R |only rib-0.30.4/rib/R/factory.R | 12 rib-0.30.4/rib/R/protoutils.R |only rib-0.30.4/rib/R/structs.R | 90 ++-- rib-0.30.4/rib/R/zzz.R | 14 rib-0.30.4/rib/README.md | 24 - rib-0.30.4/rib/inst/proto |only 20 files changed, 611 insertions(+), 855 deletions(-)
Title: Time-Dependent Sensitivity Analysis
Description: Functions that can be used to calculate time-dependent state and parameter sensitivities for both continuous- and discrete-time deterministic models. See Ng et al. (2023) <doi:10.1086/726143> for more information about time-dependent sensitivity analysis.
Author: Wee Hao Ng [aut, cre] ,
Christopher R. Myers [ctb] ,
Scott H. McArt [ctb] ,
Stephen P. Ellner [ctb]
Maintainer: Wee Hao Ng <wn68@cornell.edu>
Diff between tdsa versions 1.1-1 dated 2025-05-15 and 1.1-2 dated 2026-02-07
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS | 3 +++ build/partial.rdb |binary build/tdsa.pdf |binary inst/doc/V02_demo_translocation.html | 8 ++++---- inst/doc/V03_demo_spillover.html | 8 ++++---- 7 files changed, 22 insertions(+), 19 deletions(-)
Title: Simulation and Estimation of Ambit Processes
Description: Simulation and estimation tools for
various types of ambit processes, including trawl processes and weighted
trawl processes.
Author: Almut E. D. Veraart [aut, cre, cph]
Maintainer: Almut E. D. Veraart <a.veraart@imperial.ac.uk>
Diff between ambit versions 0.1.2 dated 2022-08-19 and 0.2.3 dated 2026-02-07
ambit-0.1.2/ambit/inst/NEWS.Rd |only ambit-0.2.3/ambit/DESCRIPTION | 14 ambit-0.2.3/ambit/MD5 | 93 ++- ambit-0.2.3/ambit/NAMESPACE | 74 +-- ambit-0.2.3/ambit/NEWS.md |only ambit-0.2.3/ambit/R/FunctionsWeightedTrawl.R |only ambit-0.2.3/ambit/R/NonparTrawlEstimation.R | 239 ++++++++-- ambit-0.2.3/ambit/R/PeriodicFunctions.R |only ambit-0.2.3/ambit/R/SupportFunctions.R | 90 ++- ambit-0.2.3/ambit/build/vignette.rds |binary ambit-0.2.3/ambit/inst/doc/vignette1_simulation.html | 137 ++--- ambit-0.2.3/ambit/inst/doc/vignette2_trawlfct_estimation.html | 150 ++---- ambit-0.2.3/ambit/man/AddSlices_Rcpp.Rd | 34 - ambit-0.2.3/ambit/man/AddWeightedSlices_Rcpp.Rd | 38 - ambit-0.2.3/ambit/man/LebA_est.Rd | 112 ++-- ambit-0.2.3/ambit/man/LebA_slice_est.Rd | 150 +++--- ambit-0.2.3/ambit/man/LebA_slice_est_approx.Rd |only ambit-0.2.3/ambit/man/LebA_slice_ratio_est_acfbased.Rd | 114 ++-- ambit-0.2.3/ambit/man/acf_Exp.Rd | 64 +- ambit-0.2.3/ambit/man/acf_LM.Rd | 66 +- ambit-0.2.3/ambit/man/acf_supIG.Rd | 72 +-- ambit-0.2.3/ambit/man/asymptotic_variance.Rd | 112 ++-- ambit-0.2.3/ambit/man/asymptotic_variance_est.Rd | 164 +++--- ambit-0.2.3/ambit/man/c4est.Rd | 106 ++-- ambit-0.2.3/ambit/man/discrete_fourier_sin_cos.Rd |only ambit-0.2.3/ambit/man/examples/trawl_est.R |only ambit-0.2.3/ambit/man/fit_LM_periodic_trawl.Rd |only ambit-0.2.3/ambit/man/fit_LM_sin_trawl.Rd |only ambit-0.2.3/ambit/man/fit_exp_periodic_trawl.Rd |only ambit-0.2.3/ambit/man/fit_exp_sin_trawl.Rd |only ambit-0.2.3/ambit/man/fit_exp_sin_trawl_periodfixed.Rd |only ambit-0.2.3/ambit/man/fit_exp_sin_trawl_periodogram.Rd |only ambit-0.2.3/ambit/man/fourier_sin_cos.Rd |only ambit-0.2.3/ambit/man/kernel_generic_trawl_acf.Rd |only ambit-0.2.3/ambit/man/kernel_generic_trawl_acf_incrtol.Rd |only ambit-0.2.3/ambit/man/kernel_trawl_acf.Rd |only ambit-0.2.3/ambit/man/kernel_trawl_acf_LM_periodic.Rd |only ambit-0.2.3/ambit/man/kernel_trawl_acf_exp_periodic.Rd |only ambit-0.2.3/ambit/man/kernel_trawl_acf_exp_sin.Rd |only ambit-0.2.3/ambit/man/my_mae.Rd | 54 +- ambit-0.2.3/ambit/man/my_mse.Rd | 54 +- ambit-0.2.3/ambit/man/my_results.Rd | 85 ++- ambit-0.2.3/ambit/man/nonpar_trawlest.Rd | 148 +++--- ambit-0.2.3/ambit/man/rq.Rd | 96 ++-- ambit-0.2.3/ambit/man/sim_weighted_trawl.Rd | 166 +++--- ambit-0.2.3/ambit/man/sim_weighted_trawl_gen.Rd | 170 +++---- ambit-0.2.3/ambit/man/test_asymnorm.Rd | 98 ++-- ambit-0.2.3/ambit/man/test_asymnorm_est.Rd | 170 +++---- ambit-0.2.3/ambit/man/test_asymnorm_est_dev.Rd | 114 ++-- ambit-0.2.3/ambit/man/trawl_Exp.Rd | 54 +- ambit-0.2.3/ambit/man/trawl_LM.Rd | 62 +- ambit-0.2.3/ambit/man/trawl_deriv.Rd | 123 ++--- ambit-0.2.3/ambit/man/trawl_deriv_mod.Rd | 120 ++--- ambit-0.2.3/ambit/man/trawl_est.Rd |only ambit-0.2.3/ambit/man/trawl_supIG.Rd | 62 +- ambit-0.2.3/ambit/tests/testthat.R | 8 ambit-0.2.3/ambit/tests/testthat/test_periodicfunction.R |only ambit-0.2.3/ambit/tests/testthat/test_simulation.R | 14 ambit-0.2.3/ambit/tests/testthat/test_weighted_trawl_acf.R |only 59 files changed, 1839 insertions(+), 1588 deletions(-)
Title: Extract, Format, and Print Statistical Output
Description: Provides functions that format statistical output in a way that
can be inserted into R Markdown documents. This is analogous to the
apa_print() functions in the 'papaja' package but prints Markdown
or LaTeX syntax.
Author: Jeffrey R. Stevens [aut, cre, cph]
Maintainer: Jeffrey R. Stevens <jeffrey.r.stevens@protonmail.com>
Diff between cocoon versions 0.2.1 dated 2025-09-07 and 0.3.0 dated 2026-02-07
DESCRIPTION | 12 MD5 | 89 ++-- NAMESPACE | 1 NEWS.md | 4 R/format_numbers.R | 27 - R/format_stats_BFBayesFactor.R | 23 - R/format_stats_aov.R | 61 +-- R/format_stats_easycorrelation.R | 21 - R/format_stats_htest.R | 97 +++-- R/format_stats_lm.R | 121 ++++-- R/format_stats_lmerTest.R | 48 +- R/format_stats_merMod.R | 65 ++- R/format_statvalues.R | 241 ++++++++---- R/format_summary.R | 392 +++++++++++++------- R/utils.R | 69 ++- README.md | 3 build/vignette.rds |binary inst/CITATION | 2 inst/doc/cocoon.R | 33 + inst/doc/cocoon.Rmd | 59 ++- inst/doc/cocoon.html | 403 +++++++++++++-------- inst/logo/logo.R | 36 + man/format_bf.Rd | 1 man/format_chisq.Rd |only man/format_corr.Rd | 1 man/format_stats.BFBayesFactor.Rd | 1 man/format_stats.Rd | 1 man/format_stats.aov.Rd | 1 man/format_stats.easycorrelation.Rd | 1 man/format_stats.htest.Rd | 12 man/format_stats.lm.Rd | 1 man/format_stats.lmerModLmerTest.Rd | 1 man/format_stats.merMod.Rd | 1 man/format_ttest.Rd | 1 tests/testthat/helper.R | 23 - tests/testthat/test-format_numbers.R | 10 tests/testthat/test-format_stats.R | 5 tests/testthat/test-format_stats_aov.R | 40 +- tests/testthat/test-format_stats_easycorrelation.R | 35 + tests/testthat/test-format_stats_htest.R | 202 +++++++++- tests/testthat/test-format_stats_lm.R | 100 ++++- tests/testthat/test-format_stats_lmerModLmerTest.R | 35 + tests/testthat/test-format_stats_merMod.R | 71 ++- tests/testthat/test-format_statvalues.R | 38 + tests/testthat/test-format_summary.R | 70 ++- vignettes/cocoon.Rmd | 59 ++- 46 files changed, 1767 insertions(+), 750 deletions(-)
Title: Functions to Efficiently Access NFL Play by Play Data
Description: A set of functions to access National Football League
play-by-play data from <https://www.nfl.com/>.
Author: Sebastian Carl [aut],
Ben Baldwin [cre, aut],
Lee Sharpe [ctb],
Maksim Horowitz [ctb],
Ron Yurko [ctb],
Samuel Ventura [ctb],
Tan Ho [ctb],
John Edwards [ctb]
Maintainer: Ben Baldwin <bbaldwin206@gmail.com>
Diff between nflfastR versions 5.1.0 dated 2025-05-14 and 5.2.0 dated 2026-02-07
nflfastR-5.1.0/nflfastR/R/load_pbp.R |only nflfastR-5.1.0/nflfastR/R/load_player_stats.R |only nflfastR-5.1.0/nflfastR/man/load_pbp.Rd |only nflfastR-5.1.0/nflfastR/man/load_player_stats.Rd |only nflfastR-5.2.0/nflfastR/DESCRIPTION | 59 ++----- nflfastR-5.2.0/nflfastR/MD5 | 83 ++++------ nflfastR-5.2.0/nflfastR/NAMESPACE | 8 nflfastR-5.2.0/nflfastR/NEWS.md | 21 ++ nflfastR-5.2.0/nflfastR/R/aggregate_game_stats.R | 12 - nflfastR-5.2.0/nflfastR/R/aggregate_game_stats_def.R | 12 - nflfastR-5.2.0/nflfastR/R/aggregate_game_stats_kicking.R | 10 - nflfastR-5.2.0/nflfastR/R/build_nflfastR_pbp.R | 11 - nflfastR-5.2.0/nflfastR/R/build_playstats.R | 27 +-- nflfastR-5.2.0/nflfastR/R/calculate_standings.R | 8 nflfastR-5.2.0/nflfastR/R/calculate_stats.R | 69 +++++++- nflfastR-5.2.0/nflfastR/R/data_documentation.R | 2 nflfastR-5.2.0/nflfastR/R/ep_wp_calculators.R | 14 + nflfastR-5.2.0/nflfastR/R/helper_add_ep_wp.R | 15 + nflfastR-5.2.0/nflfastR/R/helper_add_nflscrapr_mutations.R | 19 ++ nflfastR-5.2.0/nflfastR/R/helper_add_xyac.R | 21 +- nflfastR-5.2.0/nflfastR/R/helper_additional_functions.R | 6 nflfastR-5.2.0/nflfastR/R/helper_scrape_gc.R | 11 + nflfastR-5.2.0/nflfastR/R/nflfastR-package.R | 27 +++ nflfastR-5.2.0/nflfastR/R/report.R | 26 ++- nflfastR-5.2.0/nflfastR/R/top-level_scraper.R | 38 +++- nflfastR-5.2.0/nflfastR/R/utils.R | 17 ++ nflfastR-5.2.0/nflfastR/README.md | 23 +- nflfastR-5.2.0/nflfastR/data/field_descriptions.rda |binary nflfastR-5.2.0/nflfastR/man/build_nflfastR_pbp.Rd | 11 - nflfastR-5.2.0/nflfastR/man/calculate_player_stats.Rd | 12 - nflfastR-5.2.0/nflfastR/man/calculate_player_stats_def.Rd | 12 - nflfastR-5.2.0/nflfastR/man/calculate_player_stats_kicking.Rd | 10 - nflfastR-5.2.0/nflfastR/man/calculate_standings.Rd | 8 nflfastR-5.2.0/nflfastR/man/calculate_stats.Rd | 21 ++ nflfastR-5.2.0/nflfastR/man/clean_pbp.Rd | 2 nflfastR-5.2.0/nflfastR/man/fast_scraper.Rd | 2 nflfastR-5.2.0/nflfastR/man/fast_scraper_roster.Rd | 7 nflfastR-5.2.0/nflfastR/man/fast_scraper_schedules.Rd | 7 nflfastR-5.2.0/nflfastR/man/field_descriptions.Rd | 2 nflfastR-5.2.0/nflfastR/man/nflfastR-package.Rd | 2 nflfastR-5.2.0/nflfastR/man/reexports.Rd |only nflfastR-5.2.0/nflfastR/man/report.Rd | 8 nflfastR-5.2.0/nflfastR/tests/testthat/expected_pbp.rds |binary nflfastR-5.2.0/nflfastR/tests/testthat/test-build_nflfastR_pbp.R | 3 nflfastR-5.2.0/nflfastR/tests/testthat/test-calculate_stats.R | 22 ++ 45 files changed, 450 insertions(+), 218 deletions(-)
Title: Healthcare Antitrust Analysis
Description: Antitrust analysis of
healthcare markets. Contains functions to implement the
semiparametric estimation technique described in Raval, Rosenbaum,
and Tenn (2017) "A Semiparametric Discrete Choice Model: An Application
to Hospital Mergers" <doi:10.1111/ecin.12454>.
Author: Matthew T Panhans [aut, cre]
Maintainer: Matthew T Panhans <mpanhans@gmail.com>
Diff between healthcare.antitrust versions 0.1.4 dated 2024-01-08 and 0.1.5 dated 2026-02-07
DESCRIPTION | 11 +- MD5 | 22 ++-- NAMESPACE | 1 NEWS.md | 5 + R/impliedshare_calc.R |only README.md | 11 ++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/semipar_example.R | 35 +++++++ inst/doc/semipar_example.Rmd | 59 ++++++++++++- inst/doc/semipar_example.html | 189 +++++++++++++++++++++++++++--------------- man/impliedshare_calc.Rd |only vignettes/semipar_example.Rmd | 59 ++++++++++++- 13 files changed, 299 insertions(+), 93 deletions(-)
More information about healthcare.antitrust at CRAN
Permanent link
Title: Extended Dynamic Quantile Linear Models
Description: Routines for Bayesian estimation and analysis of dynamic quantile
linear models utilizing the extended asymmetric Laplace error distribution,
also known as extended dynamic quantile linear models (exDQLM) described in
Barata et al (2020) <doi:10.1214/21-AOAS1497>.
Author: Raquel Barata [aut, cre],
Raquel Prado [ths],
Bruno Sanso [ths],
Antonio Aguirre [aut]
Maintainer: Raquel Barata <raquel.a.barata@gmail.com>
Diff between exdqlm versions 0.2.0 dated 2026-01-12 and 0.3.0 dated 2026-02-07
DESCRIPTION | 22 - MD5 | 56 ++- NAMESPACE | 4 NEWS.md | 24 + R/BTflow.R | 4 R/RcppExports.R | 68 ++++ R/exdqlm-package.R | 17 - R/exdqlmISVB.R | 623 ++++++++++++++++++++++++++++--------- R/exdqlmMCMC.R | 3 R/gamma_bounds.R |only R/update_theta_bridge.R |only R/utils-debug.R |only R/utils.R | 47 ++ R/zzz.R |only README.md | 211 ++++++++++-- build/partial.rdb |binary inst |only man/BTflow.Rd | 4 man/dexal.Rd | 2 man/exdqlm-package.Rd | 21 + man/exdqlmISVB.Rd | 19 + man/get_gamma_bounds.Rd |only man/pexal.Rd | 2 man/qexal.Rd | 2 man/rexal.Rd | 2 src/Makevars | 7 src/Makevars.win | 7 src/RcppExports.cpp | 318 ++++++++++++++++++ src/exAL.cpp | 61 ++- src/kalman.cpp |only src/matrix_creation.cpp |only src/omp_compat.h |only src/sampling_truncnorm.cpp |only src/sampling_utils.cpp |only tests/testthat/test-gamma-bounds.R |only 35 files changed, 1283 insertions(+), 241 deletions(-)
Title: Graphics for Spherical Distributions and Earthquake Focal
Mechanisms
Description: Graphics for statistics on a sphere, as applied to geological fault data, crystallography, earthquake focal mechanisms, radiation patterns, ternary plots and geographical/geological maps. Non-double couple plotting of focal spheres and source type maps are included for statistical analysis of moment tensors.
Author: Jonathan M. Lees [aut, cre],
Keehoon Kim [ctb]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RFOC versions 3.4-10 dated 2023-09-06 and 3.4-14 dated 2026-02-07
DESCRIPTION | 11 +++--- MD5 | 84 ++++++++++++++++++++++++------------------------ NAMESPACE | 3 + R/BOXarrows3D.R | 2 - R/Beachfoc.R | 2 - R/CONVERTSDR.R | 2 - R/EApoint.R | 2 - R/GetRake.R | 2 - R/GetRakeSense.R | 10 ++--- R/MRake.R | 2 - R/MapNonDouble.R | 2 - R/PROJ3D.R | 8 ++-- R/TEACHFOC.R | 2 - R/Z3Darrow.R | 2 - R/doNonDouble.R | 2 - R/faultplane.R | 2 - R/focpoint.R | 8 ++-- R/imageSCALE.R | 2 - R/lowplane.R | 2 - R/normal.fault.R | 6 +-- R/pglyph3D.R | 6 +-- R/phong3D.R | 10 ++--- R/plotfoc.R | 6 ++- R/plotmanyfoc.R | 8 ++-- R/prepFOCS.R | 4 +- R/printMEC.R | 36 ++++++++------------ R/readCMT.R | 4 +- R/rotateFoc.R | 2 - R/strikeslip.fault.R | 2 - demo/FOCI.R | 16 ++++----- man/AXpoint.Rd | 7 ++-- man/BOXarrows3D.Rd | 2 - man/EApoint.Rd | 3 + man/MapNonDouble.Rd | 72 +++++++++++------------------------------ man/PKAM.Rd | 30 ++++++++--------- man/getCMT.Rd | 15 ++------ man/getUWfocs.Rd | 18 ++++++---- man/normal.fault.Rd | 3 + man/readCMT.Rd | 70 +++++++++------------------------------- man/spherefocgeo.Rd | 33 ------------------ man/strikeslip.fault.Rd | 6 +-- man/ternfocgeo.Rd | 30 ----------------- man/thrust.fault.Rd | 6 +-- 43 files changed, 208 insertions(+), 337 deletions(-)
Title: High-Level Functions for Tabulating, Charting and Reporting
Survey Data
Description: Craft polished tables and plots in Markdown reports.
Simply choose whether to treat your data as counts or metrics,
and the package will automatically generate well-designed default tables and plots for you.
Boiled down to the basics, with labeling features and simple interactive reports.
All functions are 'tidyverse' compatible.
Author: Jakob Juenger [aut, cre, cph] ,
Henrieke Kotthoff [aut, ctb] ,
Chantal Gaertner [ctb] ,
Sophia Rinne [ctb]
Maintainer: Jakob Juenger <jakob.juenger@uni-muenster.de>
Diff between volker versions 3.3.0 dated 2026-01-10 and 3.3.1 dated 2026-02-07
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/clean.R | 37 +++++++++++++++++++++---------------- R/labels.R | 7 +++++++ tests/testthat/_snaps/labels.md | 21 +++++++++++++++++++++ tests/testthat/_snaps/tables.md | 32 ++++++++++++++++---------------- tests/testthat/test-labels.R | 17 +++++++++++++++++ 8 files changed, 99 insertions(+), 44 deletions(-)
Title: Self-Organising Maps Coupled with Hierarchical Cluster Analysis
Description: Implements self-organising maps combined with hierarchical cluster analysis (SOM-HCA) for clustering and visualization of high-dimensional data.
The package includes functions to estimate the optimal map size based on various quality measures
and to generate a model using the selected dimensions.
It also performs hierarchical clustering on the map nodes to group similar units.
Documentation about the SOM-HCA method is provided in Pastorelli et al. (2024)
<doi:10.1002/xrs.3388>.
Author: Gianluca Pastorelli [aut, cre]
Maintainer: Gianluca Pastorelli <gianluca.pastorelli@gmail.com>
Diff between somhca versions 0.2.0 dated 2025-01-27 and 0.3.0 dated 2026-02-07
DESCRIPTION | 15 +- MD5 | 22 +-- NAMESPACE | 11 + R/clusterSOM.R | 94 ++++++++++++++-- R/finalSOM.R | 46 +++++--- R/generatePlot.R | 49 +++++--- R/loadMatrix.R | 84 +++++++++++--- R/optimalSOM.R | 307 ++++++++++++++++++++++++++++++++++++++++++++---------- man/clusterSOM.Rd | 26 +++- man/finalSOM.Rd | 12 +- man/loadMatrix.Rd | 23 ++-- man/optimalSOM.Rd | 15 +- 12 files changed, 548 insertions(+), 156 deletions(-)
Title: Panel Cointegration Tests Based on Westerlund (2007)
Description: Implements a functional approximation of the four panel
cointegration tests developed by Westerlund (2007)
<doi:10.1111/j.1468-0084.2007.00477.x>. The tests are based on structural
rather than residual dynamics and allow for heterogeneity in both the
long-run cointegrating relationship and the short-run dynamics. The package
includes logic for automated lag and lead selection via AIC/BIC, Bartlett
kernel long-run variance estimation, and a bootstrap procedure to handle
cross-sectional dependence. It also includes a bootstrapping distribution
visualization function for diagnostic purposes.
Author: Bosco Hung [aut, cre]
Maintainer: Bosco Hung <bosco.hung@st-annes.ox.ac.uk>
Diff between Westerlund versions 0.1.1 dated 2026-01-17 and 0.1.2 dated 2026-02-07
DESCRIPTION | 8 MD5 | 25 - NAMESPACE | 1 R/Westerlund.R | 74 +++- README.md | 2 inst/doc/my-vignette.R | 36 ++ inst/doc/my-vignette.Rmd | 314 +++++++++++++++++-- inst/doc/my-vignette.html | 723 +++++++++++++++++++++++++++++++++++++++++---- man/DisplayWesterlund.Rd | 4 man/WesterlundBootstrap.Rd | 6 man/WesterlundPlain.Rd | 21 + man/westerlund_test.Rd | 3 vignettes/my-vignette.Rmd | 314 +++++++++++++++++-- vignettes/references.bib |only 14 files changed, 1349 insertions(+), 182 deletions(-)
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 3.0.10 dated 2026-02-06 and 3.0.12 dated 2026-02-07
tweedie-3.0.10/tweedie/src/TweedieIntegration.f90HIDING |only tweedie-3.0.12/tweedie/DESCRIPTION | 8 +++--- tweedie-3.0.12/tweedie/MD5 | 16 ++++++------- tweedie-3.0.12/tweedie/NEWS.md | 4 +-- tweedie-3.0.12/tweedie/build/partial.rdb |binary tweedie-3.0.12/tweedie/build/vignette.rds |binary tweedie-3.0.12/tweedie/inst/doc/tweedie.html | 14 +++++------ tweedie-3.0.12/tweedie/src/Makevars.in | 8 +++++- tweedie-3.0.12/tweedie/tests/testthat/Rplots.pdf |binary tweedie-3.0.12/tweedie/tests/testthat/tests-valgrind.RHIDE |only 10 files changed, 28 insertions(+), 22 deletions(-)
Title: Laboratorio di Ricerca Sociale con R
Description: Libreria di dati, scripts e funzioni che accompagna il libro "Ricerca sociale con R. Concetti e funzioni base per la ricerca sociale".
Author: Agnese Vardanega [aut, cre]
Maintainer: Agnese Vardanega <avardanega@unite.it>
Diff between LabRS versions 0.1.0 dated 2018-12-18 and 0.2.0 dated 2026-02-07
DESCRIPTION | 25 +++++++++++++++---------- MD5 | 24 ++++++++++++------------ R/expchart.R | 29 ++++++++++++++++++++--------- R/expdata.R | 13 +++++-------- R/exptab.R | 42 +++++++++++++++++++----------------------- R/frequenze.R | 32 ++++++++++++++++++-------------- R/med.R | 12 +++++------- inst/CITATION | 25 +++++++++---------------- man/expchart.Rd | 5 +++-- man/expdata.Rd | 2 ++ man/exptab.Rd | 2 ++ man/frequenze.Rd | 2 ++ man/med.Rd | 2 +- 13 files changed, 113 insertions(+), 102 deletions(-)
Title: Models for the 'nflfastR' Package
Description: A data package that hosts all models for the 'nflfastR'
package.
Author: Sebastian Carl [cre, aut],
Ben Baldwin [aut]
Maintainer: Sebastian Carl <mrcaseb@gmail.com>
Diff between fastrmodels versions 2.0.0 dated 2025-05-15 and 2.1.0 dated 2026-02-07
DESCRIPTION | 10 ++++++---- MD5 | 23 +++++++++++++---------- NEWS.md | 4 ++++ README.md | 2 +- data/cp_model.rda |binary data/ep_model.rda |binary data/fg_model.rda |binary data/wp_model.rda |binary data/wp_model_spread.rda |binary data/xpass_model.rda |binary data/xyac_model.rda |binary tests |only 12 files changed, 24 insertions(+), 15 deletions(-)
Title: Dynamic Relational Event Analysis and Modeling
Description: A set of tools for relational and event analysis, including two- and one-mode network brokerage and structural measures, and helper functions optimized for relational event analysis with large datasets, including creating relational risk sets, computing network statistics, estimating relational event models, and simulating relational event sequences. For more information on relational event models, see Butts (2008) <doi:10.1111/j.1467-9531.2008.00203.x>, Lerner and Lomi (2020) <doi:10.1017/nws.2019.57>, Bianchi et al. (2024) <doi:10.1146/annurev-statistics-040722-060248>, and Butts et al. (2023) <doi:10.1017/nws.2023.9>. In terms of the structural measures in this package, see Leal (2025) <doi:10.1177/00491241251322517>, Burchard and Cornwell (2018) <doi:10.1016/j.socnet.2018.04.001>, and Fujimoto et al. (2018) <doi:10.1017/nws.2018.11>. This package was developed with support from the National Science Foundation’s (NSF) Human Networks and Data [...truncated...]
Author: Kevin A. Carson [aut, cre] ,
Diego F. Leal [aut]
Maintainer: Kevin A. Carson <kacarson@arizona.edu>
This is a re-admission after prior archival of version 1.0.0 dated 2026-01-20
Diff between dream versions 1.0.0 dated 2026-01-20 and 1.0.1 dated 2026-02-07
dream-1.0.0/dream/src/computeincomingsharedpartnersrem.cpp |only dream-1.0.0/dream/src/computeincomingtwopathsrem.cpp |only dream-1.0.0/dream/src/computeoutgoingsharedpartrem.cpp |only dream-1.0.0/dream/src/computeouttwopathsrem.cpp |only dream-1.0.1/dream/DESCRIPTION | 6 dream-1.0.1/dream/MD5 | 35 ++- dream-1.0.1/dream/NAMESPACE | 1 dream-1.0.1/dream/NEWS.md | 13 + dream-1.0.1/dream/R/RcppExports.R | 24 +- dream-1.0.1/dream/R/createdynamicrisksets.R |only dream-1.0.1/dream/R/createriskset.R | 34 +++ dream-1.0.1/dream/R/remtriadicformations.R | 20 +- dream-1.0.1/dream/README.md | 46 ++--- dream-1.0.1/dream/man/create_riskset.Rd | 34 +++ dream-1.0.1/dream/man/create_riskset_dynamic.Rd |only dream-1.0.1/dream/src/RcppExports.cpp | 115 ++++--------- dream-1.0.1/dream/src/computeREMweightsv1.cpp | 89 ++++++---- dream-1.0.1/dream/src/computeREMweightsv2.cpp | 94 +++++++--- dream-1.0.1/dream/src/computeremtriads.cpp |only dream-1.0.1/dream/src/onemoderiskset_temporal.cpp |only dream-1.0.1/dream/src/prefattachincppREM.cpp | 30 +-- dream-1.0.1/dream/src/remfourcycles.cpp | 31 +++ dream-1.0.1/dream/src/twomoderiskset_temporal.cpp |only 23 files changed, 352 insertions(+), 220 deletions(-)
Title: FAIR Theory Construction
Description: An integrated suite of tools for creating, maintaining, and reusing
FAIR (Findable, Accessible, Interoperable, Reusable) theories.
Designed to support transparent and collaborative theory development,
the package enables users to formalize theories,
track changes with version control,
assess pre-empirical coherence,
and derive testable hypotheses.
Aligning with open science principles and workflows,
'theorytools' facilitates the systematic improvement of theoretical frameworks
and enhances their discoverability and usability.
Author: Caspar J. Van Lissa [aut, cre]
Maintainer: Caspar J. Van Lissa <c.j.vanlissa@tilburguniversity.edu>
Diff between theorytools versions 0.1.2 dated 2025-07-13 and 0.1.3 dated 2026-02-07
theorytools-0.1.2/theorytools/vignettes/theory |only theorytools-0.1.3/theorytools/DESCRIPTION | 15 theorytools-0.1.3/theorytools/MD5 | 78 theorytools-0.1.3/theorytools/NAMESPACE | 14 theorytools-0.1.3/theorytools/NEWS.md | 41 theorytools-0.1.3/theorytools/R/code_items.R |only theorytools-0.1.3/theorytools/R/download_theory.R | 199 theorytools-0.1.3/theorytools/R/most_similar.R |only theorytools-0.1.3/theorytools/R/python.R |only theorytools-0.1.3/theorytools/R/similarity.R |only theorytools-0.1.3/theorytools/R/utils.R | 147 theorytools-0.1.3/theorytools/R/zzz.R |only theorytools-0.1.3/theorytools/build/partial.rdb |binary theorytools-0.1.3/theorytools/build/vignette.rds |binary theorytools-0.1.3/theorytools/inst/doc/augmented_dags.R | 230 theorytools-0.1.3/theorytools/inst/doc/augmented_dags.html | 1357 +-- theorytools-0.1.3/theorytools/inst/doc/causal-inference.R | 478 - theorytools-0.1.3/theorytools/inst/doc/causal-inference.Rmd | 1152 +-- theorytools-0.1.3/theorytools/inst/doc/causal-inference.html | 2665 +++---- theorytools-0.1.3/theorytools/inst/doc/computational_social_science.R | 507 - theorytools-0.1.3/theorytools/inst/doc/computational_social_science.Rmd | 29 theorytools-0.1.3/theorytools/inst/doc/computational_social_science.html | 3567 +++++----- theorytools-0.1.3/theorytools/inst/doc/dunning-kruger.R | 232 theorytools-0.1.3/theorytools/inst/doc/dunning-kruger.html | 1895 ++--- theorytools-0.1.3/theorytools/inst/doc/fair-theory.R | 252 theorytools-0.1.3/theorytools/inst/doc/fair-theory.html | 1747 ++-- theorytools-0.1.3/theorytools/inst/doc/readme.R | 116 theorytools-0.1.3/theorytools/inst/doc/readme.html | 1235 +-- theorytools-0.1.3/theorytools/inst/doc/updating_theory.R | 44 theorytools-0.1.3/theorytools/inst/doc/updating_theory.html | 885 +- theorytools-0.1.3/theorytools/inst/python |only theorytools-0.1.3/theorytools/man/code.Rd |only theorytools-0.1.3/theorytools/man/download_huggingface.Rd |only theorytools-0.1.3/theorytools/man/download_theory.Rd | 3 theorytools-0.1.3/theorytools/man/get_embeddings.Rd |only theorytools-0.1.3/theorytools/man/similarity_cosine.Rd |only theorytools-0.1.3/theorytools/man/similarity_stringdist.Rd |only theorytools-0.1.3/theorytools/tests/testthat.R | 8 theorytools-0.1.3/theorytools/tests/testthat/test-code.R |only theorytools-0.1.3/theorytools/tests/testthat/test-create_fair_theory.R | 124 theorytools-0.1.3/theorytools/tests/testthat/test-python.R |only theorytools-0.1.3/theorytools/vignettes/causal-inference.Rmd | 1152 +-- theorytools-0.1.3/theorytools/vignettes/causalinference.bib | 27 theorytools-0.1.3/theorytools/vignettes/computational_social_science.Rmd | 29 theorytools-0.1.3/theorytools/vignettes/vignettes.bib | 411 - 45 files changed, 9324 insertions(+), 9315 deletions(-)
Title: Classes for Relational Data
Description: Tools to create and modify network objects. The network class can represent a range of relational data types, and supports arbitrary vertex/edge/graph attributes.
Author: Carter T. Butts [aut, cre],
David Hunter [ctb],
Mark Handcock [ctb],
Skye Bender-deMoll [ctb],
Jeffrey Horner [ctb],
Li Wang [ctb],
Pavel N. Krivitsky [ctb] ,
Brendan Knapp [ctb] ,
Michal Bojanowski [ctb] ,
Chad Klumb [ctb]
Maintainer: Carter T. Butts <buttsc@uci.edu>
Diff between network versions 1.19.0 dated 2024-12-09 and 1.20.0 dated 2026-02-07
network-1.19.0/network/tests/testthat/test-i22-summary-character.R |only network-1.20.0/network/ChangeLog | 6 + network-1.20.0/network/DESCRIPTION | 16 ++-- network-1.20.0/network/MD5 | 33 ++++---- network-1.20.0/network/NAMESPACE | 6 + network-1.20.0/network/R/access.R | 35 +++++++- network-1.20.0/network/R/misc.R | 14 +++ network-1.20.0/network/build/partial.rdb |binary network-1.20.0/network/build/vignette.rds |binary network-1.20.0/network/inst/doc/networkVignette.Rnw | 29 +++---- network-1.20.0/network/inst/doc/networkVignette.pdf |binary network-1.20.0/network/man/get.edges.Rd | 40 +++++++++- network-1.20.0/network/man/get.inducedSubgraph.Rd | 6 - network-1.20.0/network/man/get.neighborhood.Rd | 7 + network-1.20.0/network/man/has.edges.Rd | 7 + network-1.20.0/network/man/is.adjacent.Rd | 7 + network-1.20.0/network/man/network.density.Rd | 7 + network-1.20.0/network/vignettes/networkVignette.Rnw | 29 +++---- 18 files changed, 170 insertions(+), 72 deletions(-)
Title: Constraint Multiobjective Sample Allocation
Description: Provides a framework for multipurpose optimal resource allocation in survey sampling,
extending the classical optimal allocation principles introduced by Tschuprow (1923) and
Neyman (1934) to multidomain and multivariate allocation problems. The primary method
mosalloc() allows for the consideration of precision and cost constraints at the subpopulation
level while minimizing either a vector of sampling errors or survey costs across a broad range
of optimal sample allocation problems. The approach supports both single- and multistage
designs. For single-stage stratified random sampling, the mosallocSTRS() function offers a user-
friendly interface. Sensitivity analysis is supported through the problem's dual variables, which
are naturally obtained via the internal use of the Embedded Conic Solver from the 'ECOSolveR'
package. See Willems (2025, <doi:10.25353/ubtr-9200-484c-5c89>) for a detailed description
of the theory behind 'MOSAlloc'.
Author: Felix Willems [aut, cre] ,
Ralf Muennich [ths]
Maintainer: Felix Willems <mail.willemsf+MOSAlloc@gmail.com>
Diff between MOSAlloc versions 1.2.3 dated 2026-01-27 and 1.2.4 dated 2026-02-07
DESCRIPTION | 8 +- MD5 | 42 +++++------ NEWS.md |only R/constructArestrSTRS.R | 10 +- R/constructCrestrSTRS.R | 10 +- R/constructDobjCostSTRS.R | 8 +- R/constructDobjPrecisionSTRS.R | 10 +- R/functions.R | 4 - R/mosalloc.R | 136 ++++++++++++++++++------------------- R/mosallocSTRS.R | 10 +- R/mosallocStepwiseFirst.R | 14 +-- R/print.summary.mosaSTRS.R | 6 - R/summary.mosaSTRS.R | 6 - README.md |only man/constructArestrSTRS.Rd | 4 - man/constructCrestrSTRS.Rd | 4 - man/constructDobjCostSTRS.Rd | 2 man/constructDobjPrecisionSTRS.Rd | 4 - man/mosalloc.Rd | 124 ++++++++++++++++----------------- man/mosallocSTRS.Rd | 6 - man/mosallocStepwiseFirst.Rd | 10 +- man/summary.mosaSTRS.Rd | 2 tests/testthat/test-mosallocSTRS.R | 3 23 files changed, 214 insertions(+), 209 deletions(-)
Title: Fitting and Forecasting Gegenbauer ARMA Time Series Models
Description: Methods for estimating univariate long memory-seasonal/cyclical
Gegenbauer time series processes. See for example (2022) <doi:10.1007/s00362-022-01290-3>.
Refer to the vignette for details of fitting these processes.
Author: Richard Hunt [aut, cre]
Maintainer: Richard Hunt <maint@huntemail.id.au>
Diff between garma versions 1.0.0 dated 2026-02-05 and 1.0.1 dated 2026-02-07
garma-1.0.0/garma/tests/testthat/test_garma.R |only garma-1.0.1/garma/DESCRIPTION | 8 +- garma-1.0.1/garma/MD5 | 11 +-- garma-1.0.1/garma/NEWS.md | 4 + garma-1.0.1/garma/inst/doc/introduction.html | 4 - garma-1.0.1/garma/tests/testthat/_snaps/garma2.md | 12 +-- garma-1.0.1/garma/tests/testthat/test-forecast_accuracy.R | 51 +++++++++++--- 7 files changed, 63 insertions(+), 27 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-06-19 0.4.2
2022-10-04 0.4.1
2019-08-01 0.3.0
Title: Analysis Blinding Tools
Description: Provides tools for analysis blinding in confirmatory research contexts
by masking and scrambling test-relevant aspects of data. Vector-, data frame-, and
row-wise operations support blinding for hierarchical and repeated-measures designs.
For more details see MacCoun and Perlmutter (2015) <doi:10.1038/526187a> and
Dutilh, Sarafoglou, and Wagenmakers (2019) <doi:10.1007/s11229-019-02456-7>.
Author: Tamas Nagy [aut, cre] ,
Alexandra Sarafoglou [aut, dtc] ,
Marton Kovacs [aut]
Maintainer: Tamas Nagy <nagytamas.hungary@gmail.com>
Diff between vazul versions 1.0.0 dated 2026-01-28 and 1.1.0 dated 2026-02-07
vazul-1.0.0/vazul/R/mask_variables_rowwise.R |only vazul-1.0.0/vazul/inst/bibliography.bib |only vazul-1.0.0/vazul/inst/manuscript |only vazul-1.0.0/vazul/man/mask_variables_rowwise.Rd |only vazul-1.0.0/vazul/man/scramble_variables_rowwise.Rd |only vazul-1.0.0/vazul/tests/testthat/test-mask_variables_rowwise.R |only vazul-1.1.0/vazul/DESCRIPTION | 6 vazul-1.1.0/vazul/MD5 | 72 vazul-1.1.0/vazul/NAMESPACE | 18 vazul-1.1.0/vazul/NEWS.md | 8 vazul-1.1.0/vazul/R/marp.R | 2 vazul-1.1.0/vazul/R/mask_labels.R | 123 - vazul-1.1.0/vazul/R/mask_names.R | 223 +- vazul-1.1.0/vazul/R/mask_variables.R | 269 +- vazul-1.1.0/vazul/R/scramble_values.R | 3 vazul-1.1.0/vazul/R/scramble_variables.R | 46 vazul-1.1.0/vazul/R/scramble_variables_rowwise.R | 83 vazul-1.1.0/vazul/R/utils-tidyselect.R | 56 vazul-1.1.0/vazul/R/williams.R | 3 vazul-1.1.0/vazul/README.md | 310 +- vazul-1.1.0/vazul/inst/doc/data_blinding_functions.R | 48 vazul-1.1.0/vazul/inst/doc/data_blinding_functions.html | 565 ++--- vazul-1.1.0/vazul/inst/doc/data_blinding_functions.qmd | 1030 ++++----- vazul-1.1.0/vazul/inst/doc/using_mask_names.html | 40 vazul-1.1.0/vazul/man/marp.Rd | 2 vazul-1.1.0/vazul/man/mask_labels.Rd | 1 vazul-1.1.0/vazul/man/mask_names.Rd | 3 vazul-1.1.0/vazul/man/mask_variables.Rd | 7 vazul-1.1.0/vazul/man/scramble_values.Rd | 3 vazul-1.1.0/vazul/man/scramble_variables.Rd | 35 vazul-1.1.0/vazul/man/williams.Rd | 27 vazul-1.1.0/vazul/tests/testthat/test-mask_names.R | 12 vazul-1.1.0/vazul/tests/testthat/test-mask_variables.R | 1038 +++++----- vazul-1.1.0/vazul/tests/testthat/test-scramble_values.R | 272 +- vazul-1.1.0/vazul/tests/testthat/test-scramble_variables.R | 63 vazul-1.1.0/vazul/tests/testthat/test-scramble_variables_rowwise.R | 102 vazul-1.1.0/vazul/vignettes/data_blinding_functions.qmd | 1030 ++++----- 37 files changed, 2655 insertions(+), 2845 deletions(-)
Title: Credit Risk Scorecard
Description: The `scorecard` package makes the development of credit risk scorecard
easier and efficient by providing functions for some common tasks,
such as data partition, variable selection, woe binning, scorecard scaling,
performance evaluation and report generation. These functions can also used
in the development of machine learning models.
The references including:
1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard:
Development and Implementation Using SAS.
2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards.
Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between scorecard versions 0.4.5 dated 2025-08-20 and 0.4.6 dated 2026-02-07
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/describe.R | 50 +++++++++++++++++++++++--------------------------- R/perf.R | 23 ++++++++++++++--------- build/vignette.rds |binary inst/doc/demo.html | 5 +++-- 7 files changed, 54 insertions(+), 48 deletions(-)
Title: Creates Statistical Reports
Description: Contains functions to create regulatory-style statistical reports.
Originally designed to create tables, listings, and figures for the
pharmaceutical, biotechnology, and medical device industries, these
reports are generalized enough that they could be used in any industry.
Generates text, rich-text, PDF, HTML, and Microsoft Word file formats.
The package specializes
in printing wide and long tables with automatic page wrapping and splitting.
Reports can be produced with a minimum of function calls, and without
relying on other table packages. The package supports titles, footnotes,
page header, page footers, spanning headers, page by variables,
and automatic page numbering.
Author: David Bosak [aut, cre],
Bill Huang [aut],
Kevin Kramer [ctb],
Duong Tran [ctb],
Raphael Huang [ctb],
Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between reporter versions 1.4.5 dated 2025-11-22 and 1.4.6 dated 2026-02-07
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Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <https://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] ,
Heidi Seibold [ctb] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-24 dated 2025-05-02 and 1.2-25 dated 2026-02-07
partykit-1.2-24/partykit/vignettes/ctree.Rout.save |only partykit-1.2-25/partykit/DESCRIPTION | 19 partykit-1.2-25/partykit/MD5 | 80 +-- partykit-1.2-25/partykit/build/partial.rdb |binary partykit-1.2-25/partykit/build/vignette.rds |binary partykit-1.2-25/partykit/inst/NEWS.Rd | 7 partykit-1.2-25/partykit/inst/doc/constparty.R | 203 +------- partykit-1.2-25/partykit/inst/doc/constparty.Rnw | 206 ++++---- partykit-1.2-25/partykit/inst/doc/constparty.pdf |binary partykit-1.2-25/partykit/inst/doc/ctree.R | 309 +++--------- partykit-1.2-25/partykit/inst/doc/ctree.Rnw | 94 ++- partykit-1.2-25/partykit/inst/doc/ctree.pdf |binary partykit-1.2-25/partykit/inst/doc/mob.R | 359 +++------------ partykit-1.2-25/partykit/inst/doc/mob.Rnw | 86 ++- partykit-1.2-25/partykit/inst/doc/mob.pdf |binary partykit-1.2-25/partykit/inst/doc/partykit.R | 203 +------- partykit-1.2-25/partykit/inst/doc/partykit.Rnw | 34 - partykit-1.2-25/partykit/inst/doc/partykit.pdf |binary partykit-1.2-25/partykit/man/glmtree.Rd | 2 partykit-1.2-25/partykit/man/varimp.Rd | 17 partykit-1.2-25/partykit/tests/bugfixes.R | 5 partykit-1.2-25/partykit/tests/bugfixes.Rout.save | 40 - partykit-1.2-25/partykit/tests/constparty.R | 27 - partykit-1.2-25/partykit/tests/constparty.Rout.save | 126 ++--- partykit-1.2-25/partykit/tests/regtest-MIA.Rout.save | 8 partykit-1.2-25/partykit/tests/regtest-cforest.R | 5 partykit-1.2-25/partykit/tests/regtest-cforest.Rout.save | 13 partykit-1.2-25/partykit/tests/regtest-ctree.Rout.save | 8 partykit-1.2-25/partykit/tests/regtest-glmtree.R | 8 partykit-1.2-25/partykit/tests/regtest-glmtree.Rout.save | 37 - partykit-1.2-25/partykit/tests/regtest-nmax.Rout.save | 8 partykit-1.2-25/partykit/tests/regtest-node.Rout.save | 10 partykit-1.2-25/partykit/tests/regtest-party.R | 3 partykit-1.2-25/partykit/tests/regtest-party.Rout.save | 91 ++- partykit-1.2-25/partykit/tests/regtest-split.Rout.save | 10 partykit-1.2-25/partykit/tests/regtest-weights.Rout.save | 10 partykit-1.2-25/partykit/vignettes/constparty.Rnw | 206 ++++---- partykit-1.2-25/partykit/vignettes/ctree.Rnw | 94 ++- partykit-1.2-25/partykit/vignettes/mob.Rnw | 86 ++- partykit-1.2-25/partykit/vignettes/packages.bib |only partykit-1.2-25/partykit/vignettes/party.bib | 118 ---- partykit-1.2-25/partykit/vignettes/partykit.Rnw | 34 - 42 files changed, 958 insertions(+), 1608 deletions(-)
Title: 'Rcpp' Integration for the 'mlpack' Library
Description: A fast, flexible machine learning library, written in C++, that
aims to provide fast, extensible implementations of cutting-edge
machine learning algorithms. See also Curtin et al. (2023)
<doi:10.21105/joss.05026>.
Author: Yashwant Singh Parihar [aut, ctb, cph],
Ryan Curtin [aut, ctb, cph, cre],
Dirk Eddelbuettel [aut, ctb, cph],
James Balamuta [aut, ctb, cph],
Bill March [ctb, cph],
Dongryeol Lee [ctb, cph],
Nishant Mehta [ctb, cph],
Parikshit Ram [ctb, cph],
James Cl [...truncated...]
Maintainer: Ryan Curtin <ryan@ratml.org>
Diff between mlpack versions 4.6.3 dated 2025-09-01 and 4.7.0 dated 2026-02-07
mlpack-4.6.3/mlpack/inst/include/mlpack/core/data/format.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/core/data/image_info.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/core/data/image_info_impl.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/core/data/load_image_impl.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/core/data/load_model_impl.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/core/data/load_vec_impl.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/core/data/map_policies/missing_policy.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/core/data/save_image_impl.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/core/data/types.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/core/data/types_impl.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/core/data/utilities.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/core/util/gitversion.hpp |only mlpack-4.6.3/mlpack/inst/include/mlpack/methods/ann/convolution_rules/fft_convolution.hpp |only 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mlpack-4.7.0/mlpack/R/gmm_train.R | 4 mlpack-4.7.0/mlpack/R/hmm_generate.R | 4 mlpack-4.7.0/mlpack/R/hmm_loglik.R | 4 mlpack-4.7.0/mlpack/R/hmm_train.R | 4 mlpack-4.7.0/mlpack/R/hmm_viterbi.R | 4 mlpack-4.7.0/mlpack/R/hoeffding_tree.R | 4 mlpack-4.7.0/mlpack/R/image_converter.R | 4 mlpack-4.7.0/mlpack/R/kde.R | 4 mlpack-4.7.0/mlpack/R/kernel_pca.R | 4 mlpack-4.7.0/mlpack/R/kfn.R | 4 mlpack-4.7.0/mlpack/R/kmeans.R | 4 mlpack-4.7.0/mlpack/R/knn.R | 4 mlpack-4.7.0/mlpack/R/krann.R | 4 mlpack-4.7.0/mlpack/R/lars.R | 4 mlpack-4.7.0/mlpack/R/linear_regression.R | 4 mlpack-4.7.0/mlpack/R/linear_svm.R | 4 mlpack-4.7.0/mlpack/R/lmnn.R | 4 mlpack-4.7.0/mlpack/R/local_coordinate_coding.R | 4 mlpack-4.7.0/mlpack/R/logistic_regression.R | 4 mlpack-4.7.0/mlpack/R/lsh.R | 4 mlpack-4.7.0/mlpack/R/mean_shift.R | 4 mlpack-4.7.0/mlpack/R/nbc.R | 4 mlpack-4.7.0/mlpack/R/nca.R | 4 mlpack-4.7.0/mlpack/R/nmf.R | 4 mlpack-4.7.0/mlpack/R/pca.R | 4 mlpack-4.7.0/mlpack/R/perceptron.R | 4 mlpack-4.7.0/mlpack/R/preprocess_binarize.R | 4 mlpack-4.7.0/mlpack/R/preprocess_describe.R | 2 mlpack-4.7.0/mlpack/R/preprocess_one_hot_encoding.R | 4 mlpack-4.7.0/mlpack/R/preprocess_scale.R | 8 mlpack-4.7.0/mlpack/R/preprocess_split.R | 4 mlpack-4.7.0/mlpack/R/radical.R | 4 mlpack-4.7.0/mlpack/R/random_forest.R | 4 mlpack-4.7.0/mlpack/R/softmax_regression.R | 4 mlpack-4.7.0/mlpack/R/sparse_coding.R | 4 mlpack-4.7.0/mlpack/R/test_r_binding.R | 4 mlpack-4.7.0/mlpack/inst/include/mlpack.h | 4 mlpack-4.7.0/mlpack/inst/include/mlpack.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/base.hpp | 1 mlpack-4.7.0/mlpack/inst/include/mlpack/config.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/arma_extend/find_nan.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/cereal/low_precision.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/cv_base.hpp | 22 mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/cv_base_impl.hpp | 14 mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/k_fold_cv.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/k_fold_cv_impl.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/meta_info_extractor.hpp | 20 mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/metrics/f1_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/metrics/facilities.hpp | 3 mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/metrics/precision_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/metrics/r2_score_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/metrics/silhouette_score_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/simple_cv.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/core/cv/simple_cv_impl.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/binarize.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/check_categorical_param.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/combine_options.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/confusion_matrix.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/confusion_matrix_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/data.hpp | 10 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/data_options.hpp | 359 +++- mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/dataset_mapper.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/dataset_mapper_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/detect_file_type.hpp | 39 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/detect_file_type_impl.hpp | 196 ++ mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/extension.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/font8x8_basic.h |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/has_serialize.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/image_bounding_box.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/image_bounding_box_impl.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/image_layout.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/image_layout_impl.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/image_letterbox.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/image_options.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/image_resize_crop.hpp | 161 + mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/imputation_methods/custom_imputation.hpp | 48 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/imputation_methods/listwise_deletion.hpp | 48 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/imputation_methods/mean_imputation.hpp | 157 + mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/imputation_methods/median_imputation.hpp | 89 - mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/imputer.hpp | 90 - mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/is_naninf.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load.hpp | 288 --- mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load_arff.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load_arff_impl.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load_categorical.hpp | 5 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load_categorical_impl.hpp | 36 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load_dense.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load_deprecated.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load_image.hpp | 118 - mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load_impl.hpp | 369 +--- mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load_model.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load_numeric.hpp | 211 +- mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/load_sparse.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/map_policies/datatype.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/map_policies/increment_policy.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/map_policies/map_policies.hpp | 1 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/matrix_options.hpp | 172 + mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/normalize_labels.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/normalize_labels_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/one_hot_encoding.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/one_hot_encoding_impl.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/save.hpp | 146 - mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/save_dense.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/save_deprecated.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/save_image.hpp | 128 - mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/save_impl.hpp | 303 --- mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/save_matrix.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/save_model.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/save_numeric.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/save_sparse.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/scaler_methods/max_abs_scaler.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/scaler_methods/mean_normalization.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/scaler_methods/min_max_scaler.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/scaler_methods/pca_whitening.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/scaler_methods/standard_scaler.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/scaler_methods/zca_whitening.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/split_data.hpp | 14 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/string_algorithms.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/string_encoding.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/string_encoding_dictionary.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/string_encoding_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/string_encoding_policies/bag_of_words_encoding_policy.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/string_encoding_policies/dictionary_encoding_policy.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/string_encoding_policies/policy_traits.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/string_encoding_policies/tf_idf_encoding_policy.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/text_options.hpp | 144 + mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/tokenizers/char_extract.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/data/tokenizers/split_by_any_of.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/distributions/gamma_distribution_impl.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/core/distributions/laplace_distribution.hpp | 18 mlpack-4.7.0/mlpack/inst/include/mlpack/core/distributions/laplace_distribution_impl.hpp | 14 mlpack-4.7.0/mlpack/inst/include/mlpack/core/hpt/cv_function.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/core/hpt/cv_function_impl.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/core/hpt/hpt.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/core/hpt/hpt_impl.hpp | 18 mlpack-4.7.0/mlpack/inst/include/mlpack/core/math/make_alias.hpp | 12 mlpack-4.7.0/mlpack/inst/include/mlpack/core/math/random.hpp | 24 mlpack-4.7.0/mlpack/inst/include/mlpack/core/math/shuffle_data.hpp | 324 --- mlpack-4.7.0/mlpack/inst/include/mlpack/core/metrics/non_maximal_suppression_impl.hpp | 19 mlpack-4.7.0/mlpack/inst/include/mlpack/core/stb/bundled/stb_image.h | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/stb/bundled/stb_image_resize2.h | 530 +++--- mlpack-4.7.0/mlpack/inst/include/mlpack/core/stb/bundled/stb_image_write.h | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/tree/binary_space_tree/rp_tree_mean_split_impl.hpp | 14 mlpack-4.7.0/mlpack/inst/include/mlpack/core/tree/cellbound.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/core/tree/cosine_tree/cosine_tree_impl.hpp | 20 mlpack-4.7.0/mlpack/inst/include/mlpack/core/tree/octree/octree.hpp | 10 mlpack-4.7.0/mlpack/inst/include/mlpack/core/tree/octree/octree_impl.hpp | 18 mlpack-4.7.0/mlpack/inst/include/mlpack/core/util/arma_traits.hpp | 63 mlpack-4.7.0/mlpack/inst/include/mlpack/core/util/coot_traits.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/core/util/forward.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/core/util/param.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/core/util/params_impl.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/core/util/using.hpp | 31 mlpack-4.7.0/mlpack/inst/include/mlpack/core/util/version.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/core/util/version_impl.hpp | 9 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/adaboost/adaboost_classify_main.cpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/adaboost/adaboost_main.cpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/adaboost/adaboost_train_main.cpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/activation_functions.hpp | 1 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/bipolar_sigmoid_function.hpp | 10 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/elish_function.hpp | 29 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/elliot_function.hpp | 16 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/gaussian_function.hpp | 13 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/gelu_exact_function.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/gelu_function.hpp | 43 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/hard_sigmoid_function.hpp | 14 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/hard_swish_function.hpp | 10 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/hyper_sinh_function.hpp | 21 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/identity_function.hpp | 10 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/inverse_quadratic_function.hpp | 14 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/lisht_function.hpp | 12 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/logistic_function.hpp | 26 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/mish_function.hpp | 12 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/multi_quadratic_function.hpp | 10 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/poisson1_function.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/quadratic_function.hpp | 10 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/rectifier_function.hpp | 20 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/silu_function.hpp | 18 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/softplus_function.hpp | 21 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/softsign_function.hpp | 38 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/spline_function.hpp | 16 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/swish_function.hpp | 20 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/tanh_exponential_function.hpp | 16 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/activation_functions/tanh_function.hpp | 17 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/ann.hpp | 3 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/convolution_rules/base_convolution.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/convolution_rules/convolution_rules.hpp | 3 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/convolution_rules/im2col_convolution.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/convolution_rules/naive_convolution.hpp | 263 +-- mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/dag_network.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/dag_network_impl.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/dists/bernoulli_distribution_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/dists/normal_distribution_impl.hpp | 9 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/ffn.hpp | 42 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/ffn_impl.hpp | 46 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/init_rules/const_init.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/init_rules/gaussian_init.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/init_rules/he_init.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/init_rules/kathirvalavakumar_subavathi_init.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/init_rules/lecun_normal_init.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/init_rules/nguyen_widrow_init.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/init_rules/oivs_init.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/init_rules/orthogonal_init.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/init_rules/random_init.hpp | 12 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/adaptive_max_pooling.hpp | 44 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/adaptive_max_pooling_impl.hpp | 30 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/adaptive_mean_pooling.hpp | 44 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/adaptive_mean_pooling_impl.hpp | 32 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/add.hpp | 36 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/add_impl.hpp | 26 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/add_merge.hpp | 37 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/add_merge_impl.hpp | 26 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/alpha_dropout.hpp | 33 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/alpha_dropout_impl.hpp | 27 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/base_layer.hpp | 79 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/batch_norm.hpp | 34 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/batch_norm_impl.hpp | 109 - mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/c_relu.hpp | 38 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/c_relu_impl.hpp | 45 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/celu.hpp | 33 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/celu_impl.hpp | 59 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/concat.hpp | 36 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/concat_impl.hpp | 26 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/concatenate.hpp | 36 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/concatenate_impl.hpp | 28 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/convolution.hpp | 93 - mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/convolution_impl.hpp | 327 +-- mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/dropconnect.hpp | 38 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/dropconnect_impl.hpp | 40 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/dropout.hpp | 36 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/dropout_impl.hpp | 35 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/elu.hpp | 48 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/elu_impl.hpp | 47 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/embedding.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/embedding_impl.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/flexible_relu.hpp | 36 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/flexible_relu_impl.hpp | 40 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/ftswish.hpp | 35 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/ftswish_impl.hpp | 52 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/grouped_convolution.hpp | 60 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/grouped_convolution_impl.hpp | 333 +-- mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/gru.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/gru_impl.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/hard_tanh.hpp | 28 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/hard_tanh_impl.hpp | 24 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/identity.hpp | 39 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/identity_impl.hpp | 24 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/layer.hpp | 70 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/layer_norm.hpp | 24 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/layer_norm_impl.hpp | 32 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/layer_types.hpp | 5 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/leaky_relu.hpp | 43 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/leaky_relu_impl.hpp | 25 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/linear.hpp | 34 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/linear3d.hpp | 36 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/linear3d_impl.hpp | 36 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/linear_impl.hpp | 30 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/linear_no_bias.hpp | 32 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/linear_no_bias_impl.hpp | 40 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/linear_recurrent.hpp | 39 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/linear_recurrent_impl.hpp | 91 - mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/log_softmax.hpp | 53 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/log_softmax_impl.hpp | 130 - mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/lstm.hpp | 55 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/lstm_impl.hpp | 258 +- mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/max_pooling.hpp | 38 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/max_pooling_impl.hpp | 28 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/mean_pooling.hpp | 48 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/mean_pooling_impl.hpp | 32 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/multi_layer.hpp | 42 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/multi_layer_impl.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/multihead_attention.hpp | 48 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/multihead_attention_impl.hpp | 225 +- mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/nearest_interpolation.hpp | 53 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/nearest_interpolation_impl.hpp | 73 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/noisylinear.hpp | 77 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/noisylinear_impl.hpp | 36 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/padding.hpp | 38 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/padding_impl.hpp | 52 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/parametric_relu.hpp | 50 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/parametric_relu_impl.hpp | 36 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/radial_basis_function.hpp | 69 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/radial_basis_function_impl.hpp | 59 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/recurrent_layer.hpp | 13 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/relu6.hpp | 40 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/relu6_impl.hpp | 28 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/repeat.hpp | 49 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/repeat_impl.hpp | 20 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/serialization.hpp | 118 - mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/softmax.hpp | 40 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/softmax_impl.hpp | 20 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/softmin.hpp | 43 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/softmin_impl.hpp | 20 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/sum_reduce.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/layer/sum_reduce_impl.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/loss_functions/cosine_embedding_loss_impl.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/loss_functions/mean_bias_error_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/loss_functions/multilabel_softmargin_loss_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/loss_functions/negative_log_likelihood.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/loss_functions/negative_log_likelihood_impl.hpp | 44 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/loss_functions/poisson_nll_loss_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/models |only mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/regularizer/orthogonal_regularizer_impl.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/rnn.hpp | 178 +- mlpack-4.7.0/mlpack/inst/include/mlpack/methods/ann/rnn_impl.hpp | 268 ++- mlpack-4.7.0/mlpack/inst/include/mlpack/methods/approx_kfn/drusilla_select_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/bayesian_linear_regression/bayesian_linear_regression_main.cpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/bias_svd/bias_svd_function_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/cf/cf_model.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/decision_tree/decision_tree.hpp | 12 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/decision_tree/decision_tree_impl.hpp | 24 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/decision_tree/decision_tree_main.cpp | 1 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/decision_tree/decision_tree_regressor.hpp | 12 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/decision_tree/decision_tree_regressor_impl.hpp | 24 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/det/det_main.cpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/hmm/hmm_train_main.cpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/hmm/hmm_util_impl.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/hoeffding_trees/hoeffding_tree.hpp | 12 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/hoeffding_trees/hoeffding_tree_impl.hpp | 62 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/hoeffding_trees/hoeffding_tree_main.cpp | 3 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/hoeffding_trees/hoeffding_tree_model.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/hoeffding_trees/hoeffding_tree_model_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/kde/kde_rules_impl.hpp | 12 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/lars/lars_impl.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/linear_svm/linear_svm_function_impl.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/linear_svm/linear_svm_main.cpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/lmnn/lmnn_main.cpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/lsh/lsh_main.cpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/matrix_completion/matrix_completion_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/naive_bayes/naive_bayes_classifier_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/naive_bayes/nbc_main.cpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/nca/nca_main.cpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/neighbor_search/kfn_main.cpp | 16 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/neighbor_search/knn_main.cpp | 16 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/neighbor_search/neighbor_search.hpp | 188 +- mlpack-4.7.0/mlpack/inst/include/mlpack/methods/neighbor_search/neighbor_search_impl.hpp | 241 ++ mlpack-4.7.0/mlpack/inst/include/mlpack/methods/neighbor_search/neighbor_search_stat.hpp | 10 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/neighbor_search/ns_model.hpp | 30 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/neighbor_search/ns_model_impl.hpp | 101 - mlpack-4.7.0/mlpack/inst/include/mlpack/methods/neighbor_search/typedef.hpp | 44 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/pca/pca_impl.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/perceptron/perceptron.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/perceptron/perceptron_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/perceptron/perceptron_main.cpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/preprocess/image_converter_main.cpp | 5 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/preprocess/preprocess_binarize_main.cpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/preprocess/preprocess_describe_main.cpp | 1 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/preprocess/preprocess_imputer_main.cpp | 183 -- mlpack-4.7.0/mlpack/inst/include/mlpack/methods/preprocess/preprocess_one_hot_encoding_main.cpp | 12 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/preprocess/preprocess_scale_main.cpp | 5 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/preprocess/preprocess_split_main.cpp | 7 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/preprocess/scaling_model.hpp | 14 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/preprocess/scaling_model_impl.hpp | 38 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/random_forest/random_forest.hpp | 10 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/random_forest/random_forest_impl.hpp | 18 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/range_search/range_search_main.cpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/rann/krann_main.cpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/regularized_svd/regularized_svd_function_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/async_learning_impl.hpp | 16 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/ddpg_impl.hpp | 32 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/environment/acrobot.hpp | 8 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/environment/cart_pole.hpp | 6 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/environment/cont_double_pole_cart.hpp | 11 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/environment/pendulum.hpp | 11 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/policy/aggregated_policy.hpp | 4 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/q_learning_impl.hpp | 20 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/q_networks/categorical_dqn.hpp | 38 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/q_networks/dueling_dqn.hpp | 150 - mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/q_networks/simple_dqn.hpp | 18 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/sac_impl.hpp | 28 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/reinforcement_learning/td3_impl.hpp | 28 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/softmax_regression/softmax_regression_function_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/methods/svdplusplus/svdplusplus_function_impl.hpp | 2 mlpack-4.7.0/mlpack/inst/include/mlpack/namespace_compat.hpp |only mlpack-4.7.0/mlpack/inst/include/mlpack/prereqs.hpp | 1 mlpack-4.7.0/mlpack/man/adaboost.Rd | 2 mlpack-4.7.0/mlpack/man/approx_kfn.Rd | 2 mlpack-4.7.0/mlpack/man/bayesian_linear_regression.Rd | 2 mlpack-4.7.0/mlpack/man/cf.Rd | 2 mlpack-4.7.0/mlpack/man/dbscan.Rd | 2 mlpack-4.7.0/mlpack/man/decision_tree.Rd | 2 mlpack-4.7.0/mlpack/man/det.Rd | 2 mlpack-4.7.0/mlpack/man/emst.Rd | 2 mlpack-4.7.0/mlpack/man/fastmks.Rd | 2 mlpack-4.7.0/mlpack/man/gmm_generate.Rd | 2 mlpack-4.7.0/mlpack/man/gmm_probability.Rd | 2 mlpack-4.7.0/mlpack/man/gmm_train.Rd | 2 mlpack-4.7.0/mlpack/man/hmm_generate.Rd | 2 mlpack-4.7.0/mlpack/man/hmm_loglik.Rd | 2 mlpack-4.7.0/mlpack/man/hmm_train.Rd | 2 mlpack-4.7.0/mlpack/man/hmm_viterbi.Rd | 2 mlpack-4.7.0/mlpack/man/hoeffding_tree.Rd | 2 mlpack-4.7.0/mlpack/man/image_converter.Rd | 2 mlpack-4.7.0/mlpack/man/kde.Rd | 2 mlpack-4.7.0/mlpack/man/kernel_pca.Rd | 2 mlpack-4.7.0/mlpack/man/kfn.Rd | 2 mlpack-4.7.0/mlpack/man/kmeans.Rd | 2 mlpack-4.7.0/mlpack/man/knn.Rd | 2 mlpack-4.7.0/mlpack/man/krann.Rd | 2 mlpack-4.7.0/mlpack/man/lars.Rd | 2 mlpack-4.7.0/mlpack/man/linear_regression.Rd | 2 mlpack-4.7.0/mlpack/man/linear_svm.Rd | 2 mlpack-4.7.0/mlpack/man/lmnn.Rd | 2 mlpack-4.7.0/mlpack/man/local_coordinate_coding.Rd | 2 mlpack-4.7.0/mlpack/man/logistic_regression.Rd | 2 mlpack-4.7.0/mlpack/man/lsh.Rd | 2 mlpack-4.7.0/mlpack/man/mean_shift.Rd | 2 mlpack-4.7.0/mlpack/man/nbc.Rd | 2 mlpack-4.7.0/mlpack/man/nca.Rd | 2 mlpack-4.7.0/mlpack/man/nmf.Rd | 2 mlpack-4.7.0/mlpack/man/pca.Rd | 2 mlpack-4.7.0/mlpack/man/perceptron.Rd | 2 mlpack-4.7.0/mlpack/man/preprocess_binarize.Rd | 2 mlpack-4.7.0/mlpack/man/preprocess_one_hot_encoding.Rd | 2 mlpack-4.7.0/mlpack/man/preprocess_scale.Rd | 6 mlpack-4.7.0/mlpack/man/preprocess_split.Rd | 2 mlpack-4.7.0/mlpack/man/radical.Rd | 2 mlpack-4.7.0/mlpack/man/random_forest.Rd | 2 mlpack-4.7.0/mlpack/man/softmax_regression.Rd | 2 mlpack-4.7.0/mlpack/man/sparse_coding.Rd | 2 mlpack-4.7.0/mlpack/man/test_r_binding.Rd | 2 mlpack-4.7.0/mlpack/src/Makevars | 4 mlpack-4.7.0/mlpack/src/mlpack/bindings/R/get_printable_param.hpp | 8 mlpack-4.7.0/mlpack/src/mlpack/bindings/R/get_r_type.hpp | 30 mlpack-4.7.0/mlpack/src/mlpack/bindings/R/get_type.hpp | 32 mlpack-4.7.0/mlpack/src/mlpack/bindings/R/print_input_processing.hpp | 8 mlpack-4.7.0/mlpack/src/mlpack/bindings/R/print_output_processing.hpp | 10 mlpack-4.7.0/mlpack/src/mlpack/bindings/R/print_serialize_util.hpp | 4 mlpack-4.7.0/mlpack/src/mlpack/bindings/R/tests/test_r_binding_main.cpp | 6 mlpack-4.7.0/mlpack/src/r_util.cpp | 22 mlpack-4.7.0/mlpack/tests/testthat/test-R_binding.R | 7 463 files changed, 7157 insertions(+), 6227 deletions(-)
Title: Autodiff for Influence Function Based Estimates
Description: Implements an S7 class for estimates based on influence functions,
with forward mode automatic differentiation defined for standard arithmetic
operations.
Author: Nicholas Williams [aut, cre, cph]
Maintainer: Nicholas Williams <ntwilliams.personal@gmail.com>
Diff between ife versions 0.2.1 dated 2025-11-28 and 0.2.3 dated 2026-02-07
DESCRIPTION | 10 +++-- MD5 | 15 ++++---- NEWS.md | 10 +++++ R/helpers.R | 14 ++++++-- R/influence_func_estimand.R | 77 ++++++++++++++++++++++++++++++++++++-------- R/std_error.R |only README.md | 13 ++++--- man/ife_constructor.Rd | 3 + tests/testthat/test-Ops.R | 8 ++++ 9 files changed, 117 insertions(+), 33 deletions(-)
Title: Graceful 'ggplot'-Based Graphics and Other Functions for GAMs
Fitted Using 'mgcv'
Description: Graceful 'ggplot'-based graphics and utility functions for working with generalized additive models (GAMs) fitted using the 'mgcv' package. Provides a reimplementation of the plot() method for GAMs that 'mgcv' provides, as well as 'tidyverse' compatible representations of estimated smooths.
Author: Gavin L. Simpson [aut, cre, cph] ,
Henrik Singmann [ctb]
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between gratia versions 0.11.1 dated 2025-08-25 and 0.11.2 dated 2026-02-07
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Title: Local Large Language Model Inference Engine
Description: Enables R users to run large language models locally using 'GGUF' model files
and the 'llama.cpp' inference engine. Provides a complete R interface for loading models,
generating text completions, and streaming responses in real-time. Supports local
inference without requiring cloud APIs or internet connectivity, ensuring complete
data privacy and control. Based on the 'llama.cpp' project by Georgi Gerganov (2023) <https://github.com/ggml-org/llama.cpp>.
Author: Pawan Rama Mali [aut, cre, cph],
Georgi Gerganov [aut, cph] ,
The ggml authors [cph] ,
Jeffrey Quesnelle [ctb, cph] ,
Bowen Peng [ctb, cph] ,
pi6am [ctb] ,
Ivan Yurchenko [ctb] ,
Dirk Eddelbuettel [ctb, rev]
Maintainer: Pawan Rama Mali <prm@outlook.in>
Diff between edgemodelr versions 0.1.5 dated 2026-01-28 and 0.1.6 dated 2026-02-07
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- man/edge_chat_stream.Rd | 9 +++++---- man/edge_completion.Rd | 3 ++- man/edge_download_model.Rd | 16 ++++++++-------- man/edge_download_url.Rd | 11 ++--------- man/edge_free_model.Rd | 3 ++- man/edge_load_model.Rd | 8 ++++---- man/edge_quick_setup.Rd | 4 ++-- man/edge_stream_completion.Rd | 9 +++++---- tests/testthat.R | 8 ++++---- 11 files changed, 48 insertions(+), 51 deletions(-)
Title: Density-Weighted Proportion
Description: Fit a Poisson regression to carcass distance data and integrate over the searched area at a wind farm to estimate the fraction of carcasses falling in the searched area and format the output for use as the dwp parameter in the 'GenEst' or 'eoa' package for estimating bird and bat mortality, following Dalthorp, et al. (2024) <doi:10.3133/tm7A3>.
Author: Daniel Dalthorp [aut, cre],
Manuela Huso [aut]
Maintainer: Daniel Dalthorp <ddalthorp@protonmail.com>
Diff between dwp versions 1.1 dated 2023-07-01 and 1.2 dated 2026-02-07
dwp-1.1/dwp/README.md |only dwp-1.2/dwp/DESCRIPTION | 17 - dwp-1.2/dwp/MD5 | 90 ++++---- dwp-1.2/dwp/NAMESPACE | 1 dwp-1.2/dwp/R/data.R | 3 dwp-1.2/dwp/R/fun.R | 135 ++++++++---- dwp-1.2/dwp/R/utilities.R | 10 dwp-1.2/dwp/man/Distributions.Rd | 232 ++++++++++---------- dwp-1.2/dwp/man/aic.Rd | 68 +++--- dwp-1.2/dwp/man/alt_names.Rd | 32 +- dwp-1.2/dwp/man/carcass_polygon.Rd | 38 +-- dwp-1.2/dwp/man/carcass_simple.Rd | 32 +- dwp-1.2/dwp/man/carcass_simple0.Rd | 32 +- dwp-1.2/dwp/man/cof_name.Rd | 36 +-- dwp-1.2/dwp/man/constraints.Rd | 38 +-- dwp-1.2/dwp/man/constraints_par.Rd | 32 +- dwp-1.2/dwp/man/ddFit.Rd | 333 +++++++++++++++--------------- dwp-1.2/dwp/man/ddprint.Rd | 64 ++--- dwp-1.2/dwp/man/degOrder.Rd | 32 +- dwp-1.2/dwp/man/distr_names.Rd | 32 +- dwp-1.2/dwp/man/formatGenEst.Rd | 44 +-- dwp-1.2/dwp/man/incGamma.Rd | 64 ++--- dwp-1.2/dwp/man/initLayout.Rd | 410 ++++++++++++++++++------------------- dwp-1.2/dwp/man/junk.Rd |only dwp-1.2/dwp/man/layout_eagle.Rd | 32 +- dwp-1.2/dwp/man/layout_polygon.Rd | 48 ++-- dwp-1.2/dwp/man/layout_simple.Rd | 52 ++-- dwp-1.2/dwp/man/layout_xy.Rd | 46 ++-- dwp-1.2/dwp/man/mod_all.Rd | 32 +- dwp-1.2/dwp/man/mod_color.Rd | 32 +- dwp-1.2/dwp/man/mod_lty.Rd | 32 +- dwp-1.2/dwp/man/mod_offset.Rd | 32 +- dwp-1.2/dwp/man/mod_standard.Rd | 32 +- dwp-1.2/dwp/man/mod_xy.Rd | 32 +- dwp-1.2/dwp/man/modelFilter.Rd | 316 ++++++++++++++-------------- dwp-1.2/dwp/man/mpp2ddSim.Rd | 62 ++--- dwp-1.2/dwp/man/natural.Rd | 38 +-- dwp-1.2/dwp/man/parOK.Rd | 46 ++-- dwp-1.2/dwp/man/par_default.Rd | 32 +- dwp-1.2/dwp/man/parm_name.Rd | 32 +- dwp-1.2/dwp/man/prepmod.Rd | 4 dwp-1.2/dwp/man/psi_extend.Rd | 54 ++-- dwp-1.2/dwp/man/readCarcass.Rd | 72 +++--- dwp-1.2/dwp/man/sieve_default.Rd | 70 +++--- dwp-1.2/dwp/man/sieve_win.Rd | 58 ++--- dwp-1.2/dwp/man/subset.Rd | 62 ++--- dwp-1.2/dwp/man/xyr.Rd | 34 +-- 47 files changed, 1546 insertions(+), 1479 deletions(-)
Title: A Correlation Indicator Based on Spatial Patterns
Description: Utilizes spatial association marginal contributions derived from spatial stratified heterogeneity to capture the degree of correlation between spatial patterns.
Author: Wenbo Lv [aut, cre, cph] ,
Yongze Song [aut] ,
Rui Qu [aut] ,
Wufan Zhao [aut] ,
Nan Jia [aut]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between cisp versions 0.1.0 dated 2024-11-21 and 0.2.0 dated 2026-02-07
cisp-0.1.0/cisp/man/figures/cisp/plot_g-1.png |only cisp-0.1.0/cisp/vignettes/precompile.r |only cisp-0.2.0/cisp/DESCRIPTION | 34 + cisp-0.2.0/cisp/MD5 | 39 +- cisp-0.2.0/cisp/NAMESPACE | 20 - cisp-0.2.0/cisp/NEWS.md | 4 cisp-0.2.0/cisp/R/globals.R | 4 cisp-0.2.0/cisp/R/pipes.R | 24 - cisp-0.2.0/cisp/R/spc.R | 237 ++++++------- cisp-0.2.0/cisp/R/ssh_marginalcontri.R | 435 ++++++++++++------------- cisp-0.2.0/cisp/README.md | 85 ++-- cisp-0.2.0/cisp/build/vignette.rds |binary cisp-0.2.0/cisp/inst/CITATION |only cisp-0.2.0/cisp/inst/doc/cisp.html | 224 +++--------- cisp-0.2.0/cisp/inst/doc/cisp.rmd | 211 +++--------- cisp-0.2.0/cisp/man/figures/cisp/plot_g1-1.png |binary cisp-0.2.0/cisp/man/figures/cisp/plot_g2-1.png |binary cisp-0.2.0/cisp/man/pipe.Rd | 30 - cisp-0.2.0/cisp/man/spc.Rd | 102 ++--- cisp-0.2.0/cisp/man/ssh_marginalcontri.Rd | 73 ++-- cisp-0.2.0/cisp/vignettes/cisp.rmd | 211 +++--------- cisp-0.2.0/cisp/vignettes/cisp.rmd.orig | 117 +++--- 22 files changed, 788 insertions(+), 1062 deletions(-)
Title: Bootstrap Methods for Various Network Estimation Routines
Description: Bootstrap methods to assess accuracy and stability of estimated network structures
and centrality indices <doi:10.3758/s13428-017-0862-1>. Allows for flexible
specification of any undirected network estimation procedure in R, and offers
default sets for various estimation routines.
Author: Sacha Epskamp [aut, cre],
Eiko I. Fried [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between bootnet versions 1.6 dated 2024-02-21 and 1.7.1 dated 2026-02-07
DESCRIPTION | 10 +++++----- MD5 | 29 +++++++++++++++-------------- NAMESPACE | 4 ++-- NEWS | 10 ++++++++++ R/bootTable.R | 6 ++++++ R/bootnet.R | 3 +-- R/defaultFunctions.R | 20 +++++++++++--------- R/globals.R |only R/multiverse.R | 6 +++--- R/netSimulator.R | 15 ++++++++------- R/netSimulator_methods.R | 13 ++++++++----- R/parSim.R | 19 ++++++++++++------- R/plotMethod.R | 34 +++++++++++++++++----------------- R/replicationSimulator_methods.R | 2 +- R/zzz.R | 2 +- man/estimateNetwork.Rd | 2 +- 16 files changed, 101 insertions(+), 74 deletions(-)
Title: Generator of Main Scientific References
Description: Generates a list, with a size defined by the user, containing the main scientific references and the frequency distribution of authors and journals in the list obtained.
The database is a dataframe with academic production metadata made available by bibliographic collections such as Scopus, Web of Science, etc.
The temporal evolution of scientific production on a given topic is presented and ordered lists of articles are constructed by number of citations and of authors and journals by level of productivity.
Massimo Aria, Corrado Cuccurullo. (2017) <doi:10.1016/j.joi.2017.08.007>.
Caibo Zhou, Wenyan Song. (2021) <doi:10.1016/j.jclepro.2021.126943>.
Author: Marcio Eustaquio [aut, cre]
Maintainer: Marcio Eustaquio <marcioeustaquio@id.uff.br>
Diff between bibliorefer versions 0.1.2 dated 2025-10-31 and 0.1.3 dated 2026-02-07
DESCRIPTION | 6 +++--- MD5 | 18 ++++++++++++++++-- NAMESPACE | 7 +++++++ R/arquiwos_une.R |only R/convert_biblioscopus.R |only R/convert_bibliowos.R |only R/entrada_scopus.R |only R/entrada_wos.R |only R/junt_scopuswos.R |only inst/extdata/savedrecs.bib |only inst/extdata/scopus.bib |only man/arquiwos_une.Rd |only man/convert_biblioscopus.Rd |only man/convert_bibliowos.Rd |only man/entrada_scopus.Rd |only man/entrada_wos.Rd |only man/junt_scopuswos.Rd |only 17 files changed, 26 insertions(+), 5 deletions(-)
Title: Search and Retrieve Data from the BC Data Catalogue
Description: Search, query, and download tabular and
'geospatial' data from the British Columbia Data Catalogue
(<https://catalogue.data.gov.bc.ca/>). Search catalogue data records
based on keywords, data licence, sector, data format, and B.C.
government organization. View metadata directly in R, download many
data formats, and query 'geospatial' data available via the B.C.
government Web Feature Service ('WFS') using 'dplyr' syntax.
Author: Andy Teucher [aut, cre] ,
Sam Albers [aut, ctb] ,
Stephanie Hazlitt [aut, ctb] ,
Province of British Columbia [cph]
Maintainer: Andy Teucher <andy.teucher@gmail.com>
Diff between bcdata versions 0.5.1 dated 2025-03-26 and 0.5.2 dated 2026-02-07
DESCRIPTION | 22 ++- MD5 | 52 ++++----- NEWS.md | 5 R/bcdata-package.R | 4 R/bcdc-web-services.R | 5 build/vignette.rds |binary inst/doc/bcdata.Rmd | 32 +++-- inst/doc/bcdata.html | 56 +++++----- inst/doc/efficiently-query-spatial-data-in-the-bc-data-catalogue.Rmd | 44 +++---- inst/doc/efficiently-query-spatial-data-in-the-bc-data-catalogue.html | 50 ++++---- inst/doc/explore-silviculture-data-using-bcdata.Rmd | 8 - inst/doc/explore-silviculture-data-using-bcdata.html | 16 +- inst/doc/local-filter.Rmd | 23 ++-- inst/doc/local-filter.html | 25 ++-- tests/testthat/test-get-data.R | 1 tests/testthat/test-query-geodata-filter.R | 4 vignettes/bcdata.Rmd | 32 +++-- vignettes/bcdata.Rmd.orig | 6 - vignettes/efficiently-query-spatial-data-in-the-bc-data-catalogue.Rmd | 44 +++---- vignettes/explore-silviculture-data-using-bcdata.Rmd | 8 - vignettes/local-filter.Rmd | 23 ++-- vignettes/vignette-fig-air_zones-1.png |binary vignettes/vignette-fig-bbox-1.png |binary vignettes/vignette-fig-district_parks-1.png |binary vignettes/vignette-fig-map-larch-plantations-dpg-1.png |binary vignettes/vignette-fig-unnamed-chunk-1-1.png |binary vignettes/vignette-fig-unnamed-chunk-3-1.png |binary 27 files changed, 241 insertions(+), 219 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Bryce Mecum [aut],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb], [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 23.0.0 dated 2026-01-23 and 23.0.0.1 dated 2026-02-07
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NEWS.md | 8 ++++++++ README.md | 2 +- tools/cpp/CMakeLists.txt-e |only tools/cpp/cmake_modules/ThirdpartyToolchain.cmake | 7 +++++++ tools/nixlibs.R | 2 +- 7 files changed, 26 insertions(+), 10 deletions(-)
Title: High-Level Plotting Built Upon 'ggplot2' and Other Plotting
Packages
Description: Provides high-level API and a wide range of options to create stunning, publication-quality plots effortlessly.
It is built upon 'ggplot2' and other plotting packages, and is designed to be easy to use and to work seamlessly with 'ggplot2' objects.
It is particularly useful for creating complex plots with multiple layers, facets, and annotations.
It also provides a set of functions to create plots for specific types of data, such as Venn diagrams, alluvial diagrams, and phylogenetic trees.
The package is designed to be flexible and customizable, and to work well with the 'ggplot2' ecosystem.
The API can be found at <https://pwwang.github.io/plotthis/reference/index.html>.
Author: Panwen Wang [aut, cre]
Maintainer: Panwen Wang <pwwang@pwwang.com>
Diff between plotthis versions 0.9.3 dated 2026-01-09 and 0.10.0 dated 2026-02-06
DESCRIPTION | 6 MD5 | 159 +++++++------ NEWS.md |only R/areaplot.R | 127 ++++++++--- R/barplot.R | 483 +++++++++++++++++++++++++++++++++--------- R/boxviolinplot.R | 147 ++++++++++-- R/chordplot.R | 48 +++- R/clustreeplot.R | 1 R/common_args.R | 27 ++ R/corplot.R | 2 R/densityplot.R | 135 +++++++++-- R/dimplot.R | 127 ++++++++--- R/dotplot.R | 63 ++++- R/enrich.R | 2 R/heatmap.R | 62 ++--- R/jitterplot.R | 137 +++++++++-- R/lineplot.R | 163 ++++++++++---- R/manhattanplot.R | 1 R/network.R | 6 R/piechart.R | 140 +++++++----- R/qqplot.R | 1 R/radarplot.R | 174 +++++++++++---- R/rarefractionplot.R | 6 R/ringplot.R | 131 ++++++++--- R/roccurve.R | 1 R/sankeyplot.R | 2 R/scatterplot.R | 1 R/theming.R | 87 +++++-- R/trendplot.R | 116 +++++++--- R/upsetplot.R | 1 R/utils.R | 140 +++++++++++- R/velocityplot.R | 74 +++++- R/venndiagram.R | 1 R/volcanoplot.R | 1 R/wordcloudplot.R | 1 man/AreaPlot.Rd | 44 +++ man/AreaPlotAtomic.Rd | 23 +- man/BarPlotAtomic.Rd | 36 ++- man/BarPlotGrouped.Rd | 23 +- man/BarPlotSingle.Rd | 35 ++- man/BoxViolinPlot-internal.Rd | 23 +- man/BoxViolinPlotAtomic.Rd | 22 + man/ChordPlotAtomic.Rd | 23 ++ man/DensityHistoPlotAtomic.Rd | 23 ++ man/DimPlotAtomic.Rd | 23 ++ man/DotPlotAtomic.Rd | 23 +- man/Heatmap.Rd | 18 + man/HeatmapAtomic.Rd | 18 + man/JitterPlotAtomic.Rd | 26 ++ man/LinePlot.Rd | 46 +++- man/LinePlotAtomic.Rd | 23 +- man/LinePlotGrouped.Rd | 23 +- man/LinePlotSingle.Rd | 23 +- man/PieChart.Rd | 50 +++- man/PieChartAtomic.Rd | 30 ++ man/RadarPlotAtomic.Rd | 23 ++ man/RidgePlot.Rd | 35 ++- man/RidgePlotAtomic.Rd | 22 + man/RingPlot.Rd | 45 +++ man/RingPlotAtomic.Rd | 27 ++ man/SankeyPlotAtomic.Rd | 11 man/SplitBarPlotAtomic.Rd | 29 ++ man/TrendPlot.Rd | 39 +++ man/TrendPlotAtomic.Rd | 23 ++ man/VelocityPlot.Rd | 34 ++ man/barplot.Rd | 134 ++++++++++- man/bg_layer.Rd | 6 man/boxviolinplot.Rd | 62 +++++ man/check_keep_empty.Rd |only man/check_keep_na.Rd |only man/chordplot.Rd | 25 ++ man/common_args.Rd | 22 + man/densityhistoplot.Rd | 35 ++- man/dimplot.Rd | 33 ++ man/dotplot.Rd | 30 ++ man/jitterplot.Rd | 52 +++- man/process_heatmap_data.Rd | 9 man/process_keep_na_empty.Rd |only man/radarplot.Rd | 44 +++ man/sankeyplot.Rd | 12 - man/validate_common_args.Rd | 25 +- tests/testthat/test-theming.R | 258 ++++++++++++++++++++++ tests/testthat/test_utils.R |only 83 files changed, 3416 insertions(+), 747 deletions(-)
Title: Patient-Reported Outcome Data Analysis with Stan
Description: Algorithms and subroutines for patient-reported outcome data analysis.
Author: Bin Wang [aut, cre]
Maintainer: Bin Wang <bwang831@gmail.com>
Diff between prome versions 3.0.1.5 dated 2025-11-08 and 3.1.0.1 dated 2026-02-06
DESCRIPTION | 6 +-- MD5 | 11 +++-- NAMESPACE | 1 R/blindingCPE.R | 98 ++++++++++++++++++++++++++++++++++++++++++++--------- R/blindingTEST.R | 85 +++++++++++++++++++++++++++++++++++++++++++++ man/blindingBI.Rd |only man/blindingcpe.Rd | 3 + 7 files changed, 179 insertions(+), 25 deletions(-)
Title: Bindings for 'Open Source Routing Machine'
Description: Install and control 'Open Source Routing Machine' ('OSRM')
backend executables to prepare routing data and run/stop a local
'OSRM' server. For computations with the running server use the 'osrm'
R package (<https://cran.r-project.org/package=osrm>).
Author: Egor Kotov [aut, cre, cph]
Maintainer: Egor Kotov <kotov.egor@gmail.com>
Diff between osrm.backend versions 0.1.1 dated 2025-12-06 and 0.2.0 dated 2026-02-06
DESCRIPTION | 6 MD5 | 16 NEWS.md | 13 R/osrm_server_registry.R | 3 R/osrm_start_server.R | 237 +++++++++---- R/osrm_stop_server.R | 4 man/osrm_servers.Rd | 2 man/osrm_start_server.Rd | 36 +- tests/testthat/test-osrm_server.R | 678 +++++++++++++++++++++++++++++++++++++- 9 files changed, 881 insertions(+), 114 deletions(-)
Title: Rename and Encode Data Frames Using External Crosswalk Files
Description: A pair of functions for renaming and encoding data frames
using external crosswalk files. It is especially useful when
constructing master data sets from multiple smaller data
sets that do not name or encode variables consistently
across files. Based on similar commands in 'Stata'.
Author: Benjamin Skinner [aut, cre]
Maintainer: Benjamin Skinner <ben@btskinner.io>
Diff between crosswalkr versions 0.3.0 dated 2025-04-09 and 0.4.0 dated 2026-02-06
DESCRIPTION | 9 ++-- MD5 | 20 ++++----- build/vignette.rds |binary inst/doc/collapse.R | 11 ++--- inst/doc/collapse.Rmd | 11 ++--- inst/doc/collapse.html | 27 ++++++------ inst/doc/crosswalkr.R | 49 +++++++++++++---------- inst/doc/crosswalkr.Rmd | 49 +++++++++++++---------- inst/doc/crosswalkr.html | 98 +++++++++++++++++++++-------------------------- vignettes/collapse.Rmd | 11 ++--- vignettes/crosswalkr.Rmd | 49 +++++++++++++---------- 11 files changed, 176 insertions(+), 158 deletions(-)
Title: R Commander Plug-in for Risk Demonstration
Description: R Commander plug-in to demonstrate various actuarial and financial risks. It includes valuation of bonds and stocks, portfolio optimization, classical ruin theory, demography and epidemic.
Author: Arto Luoma [aut, cre]
Maintainer: Arto Luoma <arto.luoma@wippies.com>
Diff between RcmdrPlugin.RiskDemo versions 3.2 dated 2024-02-06 and 3.3 dated 2026-02-06
ChangeLog | 4 ++++ DESCRIPTION | 16 ++++++++++------ MD5 | 14 +++++++------- NAMESPACE | 4 ++-- R/drawBars.R | 1 + R/drawIncidence.R | 2 ++ R/drawPositiveRate.R | 2 ++ R/drawTests.R | 2 ++ 8 files changed, 30 insertions(+), 15 deletions(-)
More information about RcmdrPlugin.RiskDemo at CRAN
Permanent link
More information about indonesiaFootballScoutR at CRAN
Permanent link
More information about BayesianHybridDesign at CRAN
Permanent link
Title: Variational Autoencoders for Heterogeneous Tabular Data
Description: Build and train a variational autoencoder (VAE) for mixed-type
tabular data (continuous, binary, categorical).
Models are implemented using 'TensorFlow' and 'Keras' via the 'reticulate'
interface, enabling reproducible VAE training for heterogeneous tabular
datasets.
Author: Sarah Milligan [aut, cre]
Maintainer: Sarah Milligan <slm1999@bu.edu>
Diff between autotab versions 0.1.1 dated 2025-11-24 and 0.1.2 dated 2026-02-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/extracting_distribution.R | 2 +- R/training.R | 25 +++++++++++++------------ README.md | 17 ++++++----------- man/feat_reorder.Rd | 2 +- 6 files changed, 29 insertions(+), 33 deletions(-)
Title: Download and Explore Datasets from UCSC Xena Data Hubs
Description: Download and explore datasets from UCSC Xena data hubs, which
are a collection of UCSC-hosted public databases such as TCGA, ICGC,
TARGET, GTEx, CCLE, and others. Databases are normalized so they can
be combined, linked, filtered, explored and downloaded.
Author: Shixiang Wang [aut, cre] ,
Xue-Song Liu [aut] ,
Martin Morgan [ctb],
Christine Stawitz [rev] ,
Carl Ganz [rev]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaTools versions 1.6.1 dated 2025-08-21 and 1.7.0 dated 2026-02-06
DESCRIPTION | 8 +- MD5 | 30 ++++---- NEWS.md | 10 ++ R/XenaHub-class.R | 29 -------- R/XenaQuery.R | 22 ------ R/XenaQueryProbeMap.R | 2 R/fetch.R | 36 ---------- README.md | 3 build/vignette.rds |binary data/XenaData.rda |binary inst/doc/USCSXenaTools.R | 22 +++--- inst/doc/USCSXenaTools.html | 126 ++++++++++++++++++++++++++---------- inst/queries/datasetGeneProbeAvg.xq | 5 + man/XenaHub.Rd | 5 - man/XenaScan.Rd | 2 tests/testthat/test-full-tests.R | 3 16 files changed, 143 insertions(+), 160 deletions(-)
Title: Input/Output 'SomaScan' Data
Description: Load and export 'SomaScan' data via the
'SomaLogic Operating Co., Inc.' structured text file
called an ADAT ('*.adat'). For file format see
<https://github.com/SomaLogic/SomaLogic-Data/blob/main/README.md>.
The package also exports auxiliary functions for
manipulating, wrangling, and extracting relevant
information from an ADAT object once in memory.
Author: Stu Field [aut] ,
Caleb Scheidel [cre],
SomaLogic Operating Co., Inc. [cph, fnd]
Maintainer: Caleb Scheidel <calebjscheidel@gmail.com>
Diff between SomaDataIO versions 6.4.0 dated 2025-08-29 and 6.5.0 dated 2026-02-06
DESCRIPTION | 16 ++++----- LICENSE | 4 +- MD5 | 52 ++++++++++++++++---------------- NEWS.md | 26 ++++++++++++++++ R/adat2eSet.R | 4 +- R/data.R | 2 - R/preProcessAdat.R | 25 +++++++++++---- R/read-annotations.R | 14 ++++---- R/zzz.R | 4 +- README.md | 34 ++++++++++---------- inst/cli/merge/merge_clin.R | 2 - inst/doc/SomaDataIO.Rmd | 6 +-- inst/doc/SomaDataIO.html | 10 +++--- man/SeqId.Rd | 2 - man/SomaDataIO-package.Rd | 4 +- man/SomaScanObjects.Rd | 2 - man/adat2eSet.Rd | 2 - man/addAttributes.Rd | 2 - man/pivotExpressionSet.Rd | 2 - man/preProcessAdat.Rd | 9 ++++- man/read_annotations.Rd | 2 - tests/testthat/_snaps/preProcessAdat.md | 4 -- tests/testthat/test-adat2eSet.R | 4 +- tests/testthat/test-dplyr-verbs.R | 28 ++++++++--------- tests/testthat/test-preProcessAdat.R | 14 ++++++++ tests/testthat/test-read-annotations.R | 4 +- vignettes/SomaDataIO.Rmd | 6 +-- 27 files changed, 170 insertions(+), 114 deletions(-)
Title: Classification with Parallel Factor Analysis
Description: Classification using Richard A. Harshman's Parallel Factor Analysis-1 (Parafac) model or Parallel Factor Analysis-2 (Parafac2) model fit to a three-way or four-way data array. See Harshman and Lundy (1994): <doi:10.1016/0167-9473(94)90132-5>. Uses component weights from one mode of a Parafac or Parafac2 model as features to tune parameters for one or more classification methods via a k-fold cross-validation procedure. Allows for constraints on different tensor modes. Supports penalized logistic regression, support vector machine, random forest, feed-forward neural network, regularized discriminant analysis, and gradient boosting machine. Supports binary and multiclass classification. Predicts class labels or class probabilities and calculates multiple classification performance measures. Implements parallel computing via the 'parallel', 'doParallel', and 'doRNG' packages.
Author: Matthew A. Asisgress [aut, cre]
Maintainer: Matthew A. Asisgress <mattgress@protonmail.ch>
Diff between cpfa versions 1.2-5 dated 2026-01-14 and 1.2-6 dated 2026-02-06
ChangeLog | 24 +++++++++++++++++++++ DESCRIPTION | 8 +++---- MD5 | 26 +++++++++++----------- R/cpfa.R | 13 ++++++----- R/kcv.gbm.R | 7 ++---- R/plotcpfa.R | 19 ++++++++++++++-- R/predict.tunecpfa.R | 30 +++++++++++++++++++------- R/tunecpfa.R | 58 +++++++++++++++++++++++++++++++++++++++++---------- inst/doc/cpfa.Rmd | 22 +++++++++---------- inst/doc/cpfa.pdf |binary man/cpfa.Rd | 9 +++++++ man/plotcpfa.Rd | 9 ++++++- man/tunecpfa.Rd | 22 ++++++++++++++++++- vignettes/cpfa.Rmd | 22 +++++++++---------- 14 files changed, 195 insertions(+), 74 deletions(-)
Title: A Template for Creating Reproducible 'shiny' Applications
Description: Create a skeleton 'shiny' application with create_template() that is
reproducible, can be saved and meets academic standards for attribution.
Forked from 'wallace'. Code is split into modules that are loaded and linked
together automatically and each call one function. Guidance pages explain
modules to users and flexible logging informs them of any errors. Options
enable asynchronous operations, viewing of source code, interactive maps and
data tables. Use to create complex analytical applications, following best
practices in open science and software development. Includes functions for
automating repetitive development tasks and an example application at
run_shinyscholar() that requires
install.packages("shinyscholar", dependencies = TRUE). A guide to developing
applications can be found on the package website.
Author: Simon E. H. Smart [aut, cre, cph],
Tim Lucas [aut] ,
Jamie M. Kass [ctb],
Gonzalo E. Pinilla-Buitrago [ctb],
Andrea Paz [ctb],
Bethany A. Johnson [ctb],
Valentina Grisales-Betancur [ctb],
Dean Attali [ctb],
Matthew E. Aiello-Lammens [ctb],
Cory Merow [...truncated...]
Maintainer: Simon E. H. Smart <simon.smart@cantab.net>
Diff between shinyscholar versions 0.4.3 dated 2025-09-05 and 0.4.4 dated 2026-02-06
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ README.md | 3 ++- inst/shiny/Rmd/text_intro_tab.Rmd | 2 +- inst/shiny/Rmd/userReport_intro.Rmd | 2 +- tests/testthat/test-helpers.R | 4 ++++ 7 files changed, 22 insertions(+), 13 deletions(-)
Title: Characterise Tables of an OMOP Common Data Model Instance
Description: Summarises key information in data mapped to the Observational
Medical Outcomes Partnership (OMOP) common data model. Assess suitability to
perform specific epidemiological studies and explore the different domains
to obtain feasibility counts and trends.
Author: Marta Alcalde-Herraiz [aut] ,
Kim Lopez-Guell [aut] ,
Elin Rowlands [aut] ,
Cecilia Campanile [aut, cre] ,
Edward Burn [aut] ,
Marti Catala [aut]
Maintainer: Cecilia Campanile <cecilia.campanile@ndorms.ox.ac.uk>
Diff between OmopSketch versions 1.0.0 dated 2025-11-19 and 1.0.1 dated 2026-02-06
OmopSketch-1.0.0/OmopSketch/inst/doc/missing_data.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/missing_data.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/missing_data.html |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_clinical_tables_records.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_clinical_tables_records.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_clinical_tables_records.html |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_concept_id_counts.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_concept_id_counts.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_concept_id_counts.html |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_observation_period.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_observation_period.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_observation_period.html |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_person.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_person.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_person.html |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_trend.R |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_trend.Rmd |only OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_trend.html |only OmopSketch-1.0.0/OmopSketch/vignettes/missing_data.Rmd |only OmopSketch-1.0.0/OmopSketch/vignettes/summarise_clinical_tables_records.Rmd |only OmopSketch-1.0.0/OmopSketch/vignettes/summarise_concept_id_counts.Rmd |only OmopSketch-1.0.0/OmopSketch/vignettes/summarise_observation_period.Rmd |only OmopSketch-1.0.0/OmopSketch/vignettes/summarise_person.Rmd |only OmopSketch-1.0.0/OmopSketch/vignettes/summarise_trend.Rmd |only OmopSketch-1.0.1/OmopSketch/DESCRIPTION | 8 OmopSketch-1.0.1/OmopSketch/MD5 | 125 ++---- OmopSketch-1.0.1/OmopSketch/NEWS.md | 17 OmopSketch-1.0.1/OmopSketch/R/checks.R | 82 --- OmopSketch-1.0.1/OmopSketch/R/databaseCharacteristics.R | 6 OmopSketch-1.0.1/OmopSketch/R/documentationHelper.R | 8 OmopSketch-1.0.1/OmopSketch/R/mockOmopSketch.R | 33 - OmopSketch-1.0.1/OmopSketch/R/plotObservationPeriod.R | 52 -- OmopSketch-1.0.1/OmopSketch/R/plotPerson.R | 9 OmopSketch-1.0.1/OmopSketch/R/plotTrend.R | 27 - OmopSketch-1.0.1/OmopSketch/R/shinyCharacteristics.R | 6 OmopSketch-1.0.1/OmopSketch/R/sqlTranslations.R | 2 OmopSketch-1.0.1/OmopSketch/R/summariseClinicalRecords.R | 207 ++++------ OmopSketch-1.0.1/OmopSketch/R/summariseConceptIdCounts.R | 4 OmopSketch-1.0.1/OmopSketch/R/summariseInternal.R | 23 - OmopSketch-1.0.1/OmopSketch/R/summariseMissingData.R | 7 OmopSketch-1.0.1/OmopSketch/R/summariseOmopSnapshot.R | 6 OmopSketch-1.0.1/OmopSketch/R/tableClinicalRecords.R | 12 OmopSketch-1.0.1/OmopSketch/R/tableConceptIdCounts.R | 8 OmopSketch-1.0.1/OmopSketch/R/tableMissingData.R | 12 OmopSketch-1.0.1/OmopSketch/R/tableObservationPeriod.R | 12 OmopSketch-1.0.1/OmopSketch/R/tableOmopSnapshot.R | 29 - OmopSketch-1.0.1/OmopSketch/R/tablePerson.R | 50 +- OmopSketch-1.0.1/OmopSketch/R/tableTopConceptCounts.R | 14 OmopSketch-1.0.1/OmopSketch/R/tableTrend.R | 12 OmopSketch-1.0.1/OmopSketch/R/utilities.R | 53 +- OmopSketch-1.0.1/OmopSketch/build/vignette.rds |binary OmopSketch-1.0.1/OmopSketch/inst/brand/scarlet.yml | 162 +++---- OmopSketch-1.0.1/OmopSketch/man/databaseCharacteristics.Rd | 2 OmopSketch-1.0.1/OmopSketch/man/plotObservationPeriod.Rd | 9 OmopSketch-1.0.1/OmopSketch/man/plotTrend.Rd | 15 OmopSketch-1.0.1/OmopSketch/man/shinyCharacteristics.Rd | 2 OmopSketch-1.0.1/OmopSketch/man/style-table.Rd | 8 OmopSketch-1.0.1/OmopSketch/man/tableClinicalRecords.Rd | 17 OmopSketch-1.0.1/OmopSketch/man/tableMissingData.Rd | 17 OmopSketch-1.0.1/OmopSketch/man/tableObservationPeriod.Rd | 17 OmopSketch-1.0.1/OmopSketch/man/tableOmopSnapshot.Rd | 17 OmopSketch-1.0.1/OmopSketch/man/tablePerson.Rd | 26 + OmopSketch-1.0.1/OmopSketch/man/tableTrend.Rd | 17 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-databaseCharacteristics.R | 2 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-deprecated.R |only OmopSketch-1.0.1/OmopSketch/tests/testthat/test-sqlTranslations.R | 12 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseClinicalRecords.R | 11 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseConceptIdCounts.R | 12 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseMissingData.R | 2 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseObservationPeriod.R | 7 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseOmopSnapshot.R | 1 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summarisePerson.R | 2 OmopSketch-1.0.1/OmopSketch/tests/testthat/test-summariseTrend.R | 17 OmopSketch-1.0.1/OmopSketch/vignettes/articles |only 74 files changed, 615 insertions(+), 584 deletions(-)
Title: Client for the Ifo Institute Time Series
Description: Download ifo business survey data and more time series from
ifo institute <https://www.ifo.de/en/ifo-time-series>.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between ifo versions 0.2.2 dated 2025-08-31 and 0.2.3 dated 2026-02-06
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/ifo.R | 37 ++++++++++++++++++------------------- README.md | 6 ++---- man/figures/README-plotting-1.png |binary man/ifo_business.Rd | 2 +- man/ifo_climate.Rd | 2 +- man/ifo_expectation.Rd | 4 ++-- 9 files changed, 41 insertions(+), 39 deletions(-)
Title: Estimating Fixed Effects Individual Slope Models
Description: Provides the function feis() to estimate fixed effects individual
slope (FEIS) models. The FEIS model constitutes a more general version of
the often-used fixed effects (FE) panel model, as implemented in the
package 'plm' by Croissant and Millo (2008) <doi:10.18637/jss.v027.i02>.
In FEIS models, data are not only person demeaned like in conventional
FE models, but detrended by the predicted individual slope of each
person or group. Estimation is performed by applying least squares lm()
to the transformed data. For more details on FEIS models see Bruederl and
Ludwig (2015, ISBN:1446252442); Frees (2001) <doi:10.2307/3316008>;
Polachek and Kim (1994) <doi:10.1016/0304-4076(94)90075-2>;
Ruettenauer and Ludwig (2020) <doi:10.1177/0049124120926211>;
Wooldridge (2010, ISBN:0262294354). To test consistency of conventional FE
and random effects estimators against heterogeneous slopes, the package
also provides the functions feistest() for an artificial regression test
[...truncated...]
Author: Tobias Ruettenauer [aut, cre] ,
Volker Ludwig [aut]
Maintainer: Tobias Ruettenauer <ruettenauer@sowi.uni-kl.de>
Diff between feisr versions 1.3.0 dated 2022-04-01 and 1.3.1 dated 2026-02-06
DESCRIPTION | 13 MD5 | 24 NAMESPACE | 1 NEWS.md | 6 R/aod.R | 1 R/feis.R | 3 R/feisr-package.R | 2 R/utility_functions.R | 21 build/partial.rdb |binary build/vignette.rds |binary inst/doc/feisr-vignette.R | 2 inst/doc/feisr-vignette.html | 1257 ++++++++++++++++++++++++++++++------------- man/feisr-package.Rd | 4 13 files changed, 931 insertions(+), 403 deletions(-)
Title: Retrieve Data on European Union Law
Description: Access to data on European Union laws and court decisions made easy with pre-defined 'SPARQL' queries and 'GET' requests. See Ovadek (2021) <doi:10.1080/2474736X.2020.1870150> .
Author: Michal Ovadek [aut, cre, cph]
Maintainer: Michal Ovadek <michal.ovadek@gmail.com>
Diff between eurlex versions 0.4.8 dated 2024-07-03 and 0.4.9 dated 2026-02-06
DESCRIPTION | 20 ++++----- MD5 | 36 ++++++++-------- NAMESPACE | 2 NEWS.md | 12 +++++ R/elx_council_votes.R | 63 +++++++++++++--------------- R/elx_curia_list.R | 94 +++++++++++++++++++++---------------------- R/elx_download_xml.R | 20 +++++---- R/elx_fetch_data.R | 92 +++++++++++++++++++----------------------- R/elx_label_eurovoc.R | 6 +- R/elx_make_query.R | 2 R/elx_run_query.R | 60 +++++++++------------------ README.md | 31 -------------- build/vignette.rds |binary inst/doc/sparql-queries.R | 10 +--- inst/doc/sparql-queries.Rmd | 10 +--- inst/doc/sparql-queries.html | 94 +++++++++++++++++++++---------------------- man/elx_download_xml.Rd | 2 man/elx_label_eurovoc.Rd | 2 vignettes/sparql-queries.Rmd | 10 +--- 19 files changed, 255 insertions(+), 311 deletions(-)
Title: Modular Crop Growth Simulations
Description: A cross-platform representation of models as sets of equations
that facilitates modularity in model building and allows users to harness
modern techniques for numerical integration and data visualization.
Documentation is provided by several vignettes included in this package;
also see Lochocki et al. (2022) <doi:10.1093/insilicoplants/diac003>.
Author: Justin M. McGrath [cre, aut] ,
Edward B. Lochocki [aut] ,
Yufeng He [aut] ,
Scott W. Oswald [aut] ,
Scott Rohde [aut] ,
Deepak Jaiswal [aut] ,
Megan L. Matthews [aut] ,
Fernando E. Miguez [aut] ,
Stephen P. Long [aut] ,
Dan Wang [ctb],
David LeBauer [...truncated...]
Maintainer: Justin M. McGrath <jmcgrath@illinois.edu>
Diff between BioCro versions 3.3.0 dated 2025-12-13 and 3.3.1 dated 2026-02-06
BioCro-3.3.0/BioCro/src/math/roots/multidim/broyden_method.h |only BioCro-3.3.1/BioCro/DESCRIPTION | 8 BioCro-3.3.1/BioCro/MD5 | 19 BioCro-3.3.1/BioCro/NEWS.md | 12 BioCro-3.3.1/BioCro/inst/doc/BioCro.R | 7 BioCro-3.3.1/BioCro/inst/doc/BioCro.Rmd | 7 BioCro-3.3.1/BioCro/src/Makevars | 3 BioCro-3.3.1/BioCro/src/math/roots/multidim/broyden.h | 6 BioCro-3.3.1/BioCro/src/math/roots/multidim/zeros.h | 229 +++-------- BioCro-3.3.1/BioCro/src/module_library/broyden_test.h | 6 BioCro-3.3.1/BioCro/vignettes/BioCro.Rmd | 7 11 files changed, 122 insertions(+), 182 deletions(-)
Title: Profiling Inference Functions for Various Model Classes
Description: Provides tools that can be used to calculate, evaluate, plot and use for inference the profiles of *arbitrary* inference functions for *arbitrary* 'glm'-like fitted models with linear predictors. More information on the methods that are implemented can be found in Kosmidis (2008) <https://www.r-project.org/doc/Rnews/Rnews_2008-2.pdf>.
Author: Ioannis Kosmidis [aut, cre]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between profileModel versions 0.6.1 dated 2021-01-08 and 0.6.2 dated 2026-02-06
DESCRIPTION | 9 +++++---- MD5 | 11 ++++++----- R/print.profileModel.R | 2 +- inst/CHANGES | 4 ++++ inst/WORDLIST |only man/plot.profileModel.Rd | 2 +- man/profileModel.Rd | 2 +- 7 files changed, 18 insertions(+), 12 deletions(-)
Title: Add Ipea Editorial Standards to 'ggplot2' Graphics
Description: Convenient functions to create 'ggplot2' graphics following the
editorial guidelines of the Institute for Applied Economic
Research (Ipea).
Author: Pedro Ferreira [aut, cre],
Pedro Jorge [aut],
Daniel Lima [aut],
Gustavo Coelho [aut],
Rafael H. M. Pereira [aut],
Lucas Mation [aut],
Fabio Vaz [ctb],
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Pedro Ferreira <pedro.ferreira2@ipea.gov.br>
Diff between ipeaplot versions 0.5.0 dated 2025-10-07 and 0.5.1 dated 2026-02-06
DESCRIPTION | 8 ++--- MD5 | 32 ++++++++++---------- NEWS.md | 3 + R/ipea_palette.R | 68 +++++++++++++++++++------------------------ R/save_ipeaplot.R | 60 ++++++++++++++++++++----------------- R/scale_ipea.R | 22 +++++-------- README.md | 2 - inst/doc/cookbook.html | 4 +- inst/doc/intro_ipeaplot.R | 18 +++++------ inst/doc/intro_ipeaplot.Rmd | 4 +- inst/doc/intro_ipeaplot.html | 5 +-- man/ipea_pal.Rd | 10 +++--- man/ipea_palette.Rd | 10 +++--- man/save_ipeaplot.Rd | 2 - man/scale_color_ipea.Rd | 8 ++--- man/scale_fill_ipea.Rd | 8 ++--- vignettes/intro_ipeaplot.Rmd | 4 +- 17 files changed, 133 insertions(+), 135 deletions(-)
Title: R Integration for 'Goose' AI
Description: Seamless integration between R and 'Goose' AI capabilities
including memory management, visualization enhancements, and workflow
automation. Save R objects to 'Goose' memory, apply Block branding to
visualizations, and manage data science project workflows.
For more information about 'Goose' AI, see <https://github.com/block/goose>.
Author: Brandon Theriault [aut, cre]
Maintainer: Brandon Theriault <btheriault@block.xyz>
Diff between gooseR versions 0.1.1 dated 2025-12-22 and 0.1.2 dated 2026-02-06
DESCRIPTION | 6 +- MD5 | 51 +++++++++++---------- NAMESPACE | 2 NEWS.md | 20 ++++++++ R/addins.R | 3 - R/ai_assistant.R | 6 +- R/async.R | 10 ++-- R/branding.R | 6 +- R/cli_integration.R | 92 +++++++++++++++++++++++++++------------ R/cli_runner.R |only R/goose_ask_enhanced.R | 70 ++++++++++++++++------------- R/streaming.R | 46 ++++++++++++++++++- R/templates.R | 1 R/ui_components.R | 2 README.md | 17 +++++-- inst/doc/use-case-demo.html | 4 - man/StreamHandler.Rd | 31 +++++++++++-- man/StreamSession.Rd | 10 ++++ man/WorkerPool.Rd | 15 +++++- man/goose_ask.Rd | 12 ++++- man/goose_ask_raw.Rd | 9 ++- man/goose_async_timeout.Rd | 4 - man/goose_recipe.Rd | 15 +++++- man/goose_session.Rd | 10 +++- man/goose_stream.Rd | 11 ++++ man/goose_templates.Rd |only man/goose_test_cli.Rd | 8 ++- tests/testthat/test-cli-runner.R |only 28 files changed, 341 insertions(+), 120 deletions(-)
Title: 'VigiBase' Pharmacovigilance Database Toolbox
Description: Perform the analysis of the World Health Organization
(WHO) Pharmacovigilance database 'VigiBase' (Extract Case Level version),
<https://who-umc.org/>
e.g., load data, perform data management,
disproportionality analysis, and descriptive statistics. Intended for
pharmacovigilance routine use or studies.
This package is NOT supported nor reflect the opinion of the WHO, or the
Uppsala Monitoring Centre.
Disproportionality methods are described by Norén et
al (2013) <doi:10.1177/0962280211403604>.
Author: Charles Dolladille [aut, cre] ,
Basile Chretien [aut] ,
Universite de Caen Normandie [cph] ,
Unite de pharmaco-epidemiologie [cph]
Maintainer: Charles Dolladille <cdolladille@hotmail.com>
Diff between vigicaen versions 0.16.1 dated 2025-07-25 and 1.0.0 dated 2026-02-06
vigicaen-0.16.1/vigicaen/R/dt_fst.R |only vigicaen-0.16.1/vigicaen/man/dt_fst.Rd |only vigicaen-0.16.1/vigicaen/tests/testthat/_snaps/dt_fst.md |only vigicaen-0.16.1/vigicaen/tests/testthat/test-dt_fst.R |only vigicaen-1.0.0/vigicaen/DESCRIPTION | 10 vigicaen-1.0.0/vigicaen/MD5 | 238 - vigicaen-1.0.0/vigicaen/NAMESPACE | 3 vigicaen-1.0.0/vigicaen/NEWS.md | 49 vigicaen-1.0.0/vigicaen/R/add_adr.R | 13 vigicaen-1.0.0/vigicaen/R/add_dose.R |only vigicaen-1.0.0/vigicaen/R/add_drug.R | 11 vigicaen-1.0.0/vigicaen/R/add_ind.R |only vigicaen-1.0.0/vigicaen/R/check_data_type.R | 457 +- vigicaen-1.0.0/vigicaen/R/check_dm.R | 98 vigicaen-1.0.0/vigicaen/R/check_id_list.R | 220 - vigicaen-1.0.0/vigicaen/R/compute_dispro.R | 688 +-- vigicaen-1.0.0/vigicaen/R/compute_or_mod.R | 220 - vigicaen-1.0.0/vigicaen/R/create_example_tables.R | 2 vigicaen-1.0.0/vigicaen/R/data_doc.R | 2 vigicaen-1.0.0/vigicaen/R/desc_cont.R | 646 +-- vigicaen-1.0.0/vigicaen/R/desc_facvar.R | 420 +- vigicaen-1.0.0/vigicaen/R/desc_outcome.R | 346 - vigicaen-1.0.0/vigicaen/R/desc_tto.R | 218 - vigicaen-1.0.0/vigicaen/R/dt_parquet.R | 2 vigicaen-1.0.0/vigicaen/R/get_llt_smq.R | 2 vigicaen-1.0.0/vigicaen/R/get_llt_soc.R | 2 vigicaen-1.0.0/vigicaen/R/query_data_type.R | 139 vigicaen-1.0.0/vigicaen/R/screen_adr.R | 4 vigicaen-1.0.0/vigicaen/R/screen_drug.R | 272 - vigicaen-1.0.0/vigicaen/R/tb_subset.R | 779 ++-- vigicaen-1.0.0/vigicaen/R/tb_vigibase.R | 2 vigicaen-1.0.0/vigicaen/R/tb_who.R | 2 vigicaen-1.0.0/vigicaen/R/vigi_routine.R | 1796 +++++---- vigicaen-1.0.0/vigicaen/README.md | 7 vigicaen-1.0.0/vigicaen/inst/doc/basic_workflow.R | 22 vigicaen-1.0.0/vigicaen/inst/doc/basic_workflow.Rmd | 53 vigicaen-1.0.0/vigicaen/inst/doc/basic_workflow.html | 347 + vigicaen-1.0.0/vigicaen/inst/doc/descriptive.R | 2 vigicaen-1.0.0/vigicaen/inst/doc/descriptive.Rmd | 2 vigicaen-1.0.0/vigicaen/inst/doc/descriptive.html | 7 vigicaen-1.0.0/vigicaen/inst/doc/getting_started.html | 5 vigicaen-1.0.0/vigicaen/inst/doc/interactions.html | 5 vigicaen-1.0.0/vigicaen/inst/doc/routine_pharmacovigilance.R | 2 vigicaen-1.0.0/vigicaen/inst/doc/routine_pharmacovigilance.Rmd | 2 vigicaen-1.0.0/vigicaen/inst/doc/routine_pharmacovigilance.html | 9 vigicaen-1.0.0/vigicaen/inst/doc/template_dictionary.R | 8 vigicaen-1.0.0/vigicaen/inst/doc/template_dictionary.Rmd | 8 vigicaen-1.0.0/vigicaen/inst/doc/template_dictionary.html | 15 vigicaen-1.0.0/vigicaen/inst/doc/template_main.R | 19 vigicaen-1.0.0/vigicaen/inst/doc/template_main.Rmd | 19 vigicaen-1.0.0/vigicaen/inst/doc/template_main.html | 239 - vigicaen-1.0.0/vigicaen/inst/doc/template_routine.R | 2 vigicaen-1.0.0/vigicaen/inst/doc/template_routine.Rmd | 2 vigicaen-1.0.0/vigicaen/inst/doc/template_routine.html | 7 vigicaen-1.0.0/vigicaen/man/add_adr.Rd | 4 vigicaen-1.0.0/vigicaen/man/add_dose.Rd |only vigicaen-1.0.0/vigicaen/man/add_drug.Rd | 8 vigicaen-1.0.0/vigicaen/man/add_ind.Rd |only vigicaen-1.0.0/vigicaen/man/create_example_tables.Rd | 2 vigicaen-1.0.0/vigicaen/man/desc_cont.Rd | 2 vigicaen-1.0.0/vigicaen/man/desc_outcome.Rd | 2 vigicaen-1.0.0/vigicaen/man/figures/vg.png |binary vigicaen-1.0.0/vigicaen/man/get_drecno.Rd | 2 vigicaen-1.0.0/vigicaen/man/get_llt_smq.Rd | 4 vigicaen-1.0.0/vigicaen/man/get_llt_soc.Rd | 4 vigicaen-1.0.0/vigicaen/man/meddra_.Rd | 2 vigicaen-1.0.0/vigicaen/man/screen_adr.Rd | 4 vigicaen-1.0.0/vigicaen/man/screen_drug.Rd | 4 vigicaen-1.0.0/vigicaen/man/tb_meddra.Rd | 2 vigicaen-1.0.0/vigicaen/man/tb_subset.Rd | 2 vigicaen-1.0.0/vigicaen/man/tb_vigibase.Rd | 4 vigicaen-1.0.0/vigicaen/man/tb_who.Rd | 4 vigicaen-1.0.0/vigicaen/man/vigi_routine.Rd | 9 vigicaen-1.0.0/vigicaen/tests/testthat/Rplots.pdf |binary vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/add_adr.md | 245 - vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/add_dose.md |only vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/add_drug.md | 423 +- vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/add_ind.md |only vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/check_data_type.md | 1030 ++--- vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/desc_cont.md | 117 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/macos |only vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/query_data_type.md | 115 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/arrow-table.svg | 52 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/base-graphic.svg | 52 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/case-time-to-onset.svg | 60 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/case-tto-above-90-days.svg | 60 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/case-tto-below-90-days.svg | 60 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/custom-drug-and-adr-labels.svg | 60 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/dual-drug-analysis.svg | 52 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/exporting.svg | 60 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/ic025-below-0.svg | 52 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-cases.svg | 28 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-rechallenge.svg | 32 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-time-to-onset-export.svg | 28 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-time-to-onset-with-2-drugs.svg | 28 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/no-time-to-onset.svg | 28 vigicaen-1.0.0/vigicaen/tests/testthat/_snaps/vigi_routine/suspect-only-true.svg | 52 vigicaen-1.0.0/vigicaen/tests/testthat/test-add_adr.R | 32 vigicaen-1.0.0/vigicaen/tests/testthat/test-add_dose.R |only vigicaen-1.0.0/vigicaen/tests/testthat/test-add_drug.R | 35 vigicaen-1.0.0/vigicaen/tests/testthat/test-add_ind.R |only vigicaen-1.0.0/vigicaen/tests/testthat/test-check_data_type.R | 468 +- vigicaen-1.0.0/vigicaen/tests/testthat/test-check_dm.R | 132 vigicaen-1.0.0/vigicaen/tests/testthat/test-check_id_list.R | 166 vigicaen-1.0.0/vigicaen/tests/testthat/test-compute_dispro.R | 1038 ++--- vigicaen-1.0.0/vigicaen/tests/testthat/test-compute_or_mod.R | 220 - vigicaen-1.0.0/vigicaen/tests/testthat/test-desc_cont.R | 927 ++--- vigicaen-1.0.0/vigicaen/tests/testthat/test-desc_facvar.R | 826 ++-- vigicaen-1.0.0/vigicaen/tests/testthat/test-dt_parquet.R | 5 vigicaen-1.0.0/vigicaen/tests/testthat/test-extract_tto.R | 442 +- vigicaen-1.0.0/vigicaen/tests/testthat/test-get_drecno.R | 1440 +++---- vigicaen-1.0.0/vigicaen/tests/testthat/test-query_data_type.R | 8 vigicaen-1.0.0/vigicaen/tests/testthat/test-screen_adr.R | 634 +-- vigicaen-1.0.0/vigicaen/tests/testthat/test-tb_subset.R | 1036 ++--- vigicaen-1.0.0/vigicaen/tests/testthat/test-vigi_routine.R | 1853 +++++----- vigicaen-1.0.0/vigicaen/tests/testthat/testthat-problems.rds |only vigicaen-1.0.0/vigicaen/vignettes/basic_workflow.Rmd | 53 vigicaen-1.0.0/vigicaen/vignettes/descriptive.Rmd | 2 vigicaen-1.0.0/vigicaen/vignettes/routine_pharmacovigilance.Rmd | 2 vigicaen-1.0.0/vigicaen/vignettes/template_dictionary.Rmd | 8 vigicaen-1.0.0/vigicaen/vignettes/template_main.Rmd | 19 vigicaen-1.0.0/vigicaen/vignettes/template_routine.Rmd | 2 122 files changed, 10116 insertions(+), 9348 deletions(-)
Title: 'Mica' Data Web Portal Client
Description: 'Mica' is a server application used to create data web portals for
large-scale epidemiological studies or multiple-study consortia. 'Mica' helps
studies to provide scientifically robust data visibility and web presence
without significant information technology effort. 'Mica' provides a
structured description of consortia, studies, annotated and searchable data
dictionaries, and data access request management. This 'Mica' client allows
to perform data extraction for reporting purposes.
Author: Yannick Marcon [aut, cre] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between micar versions 1.1.2 dated 2021-04-16 and 1.2.0 dated 2026-02-06
DESCRIPTION | 16 - MD5 | 62 +++-- NAMESPACE | 4 R/mica.R | 74 ++++-- R/mica.dars.R | 119 ++++++++++- R/mica.datasets.R | 34 +-- R/mica.networks.R | 18 - R/mica.rql.R | 4 R/mica.studies.R | 20 - R/mica.study.dces.R | 15 - R/mica.study.populations.R | 15 - R/mica.variables.R | 23 +- README.md | 13 - build/vignette.rds |binary inst/doc/mica-dar.R | 16 - inst/doc/mica-dar.html | 372 ++++++++++++++++++++++++++++------ inst/doc/mica-search.R | 20 - inst/doc/mica-search.html | 389 +++++++++++++++++++++++++++++------- man/mica.dar.Rd | 10 man/mica.dar.actions.Rd | 12 - man/mica.dar.agreements.Rd |only man/mica.dar.amendment.Rd | 10 man/mica.dar.amendment.form.Rd | 12 - man/mica.dar.amendment.history.Rd | 12 - man/mica.dar.amendments.Rd | 10 man/mica.dar.amendments.history.Rd | 10 man/mica.dar.form.Rd | 12 - man/mica.dar.history.Rd | 14 - man/mica.dar.preliminaries.Rd |only man/mica.dar.preliminary.Rd |only man/mica.dar.preliminary.history.Rd |only man/mica.dars.Rd | 14 - man/mica.login.Rd | 5 man/mica.studies.Rd | 2 34 files changed, 1006 insertions(+), 331 deletions(-)
Title: Creating Echarts Visualizations as Easy as Possible
Description: Create beautiful and interactive visualizations in a single function call. The 'data.table' package is utilized to perform the data wrangling necessary to prepare your data for the plot types you wish to build, along with allowing fast processing for big data. There are two broad classes of plots available: standard plots and machine learning evaluation plots. There are lots of parameters available in each plot type function for customizing the plots (such as faceting) and data wrangling (such as variable transformations and aggregation).
Author: Adrian Antico [aut, cre, cph]
Maintainer: Adrian Antico <adrianantico@gmail.com>
Diff between AutoPlots versions 1.0.0 dated 2024-01-23 and 1.5.0 dated 2026-02-06
AutoPlots-1.0.0/AutoPlots/inst |only AutoPlots-1.5.0/AutoPlots/DESCRIPTION | 16 AutoPlots-1.5.0/AutoPlots/MD5 | 168 AutoPlots-1.5.0/AutoPlots/NAMESPACE | 197 - AutoPlots-1.5.0/AutoPlots/NEWS.md | 45 AutoPlots-1.5.0/AutoPlots/R/AccessoryFunctions.R | 111 AutoPlots-1.5.0/AutoPlots/R/Imports.R | 15 AutoPlots-1.5.0/AutoPlots/R/PlotFunctions.R | 504 ++ AutoPlots-1.5.0/AutoPlots/R/PlotFunctions_NEW.R |only AutoPlots-1.5.0/AutoPlots/R/revised_echarts4r_functions.R |only AutoPlots-1.5.0/AutoPlots/R/zzz.R |only AutoPlots-1.5.0/AutoPlots/README.md | 1743 ++++++++-- AutoPlots-1.5.0/AutoPlots/man/ACF.Rd |only AutoPlots-1.5.0/AutoPlots/man/Area.Rd |only AutoPlots-1.5.0/AutoPlots/man/Bar.Rd |only AutoPlots-1.5.0/AutoPlots/man/BarPlot3D.Rd |only AutoPlots-1.5.0/AutoPlots/man/BinaryMetricsPlot.Rd |only AutoPlots-1.5.0/AutoPlots/man/Box.Rd |only AutoPlots-1.5.0/AutoPlots/man/Calibration.Box.Rd |only AutoPlots-1.5.0/AutoPlots/man/Calibration.Line.Rd |only AutoPlots-1.5.0/AutoPlots/man/ConfusionMatrix.Rd |only AutoPlots-1.5.0/AutoPlots/man/Copula.Rd |only AutoPlots-1.5.0/AutoPlots/man/Copula3D.Rd |only AutoPlots-1.5.0/AutoPlots/man/CorrMatrix.Rd |only AutoPlots-1.5.0/AutoPlots/man/Density.Rd |only AutoPlots-1.5.0/AutoPlots/man/Donut.Rd |only AutoPlots-1.5.0/AutoPlots/man/Gains.Rd |only AutoPlots-1.5.0/AutoPlots/man/HeatMap.Rd |only AutoPlots-1.5.0/AutoPlots/man/Histogram.Rd |only AutoPlots-1.5.0/AutoPlots/man/Lift.Rd |only AutoPlots-1.5.0/AutoPlots/man/Line.Rd |only AutoPlots-1.5.0/AutoPlots/man/PACF.Rd |only AutoPlots-1.5.0/AutoPlots/man/Parallel.Rd |only AutoPlots-1.5.0/AutoPlots/man/PartialDependence.Box.Rd |only AutoPlots-1.5.0/AutoPlots/man/PartialDependence.HeatMap.Rd |only AutoPlots-1.5.0/AutoPlots/man/PartialDependence.Line.Rd |only AutoPlots-1.5.0/AutoPlots/man/Pie.Rd |only AutoPlots-1.5.0/AutoPlots/man/Plot.ACF.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.Area.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Bar.Rd | 31 AutoPlots-1.5.0/AutoPlots/man/Plot.BarPlot3D.Rd | 31 AutoPlots-1.5.0/AutoPlots/man/Plot.BinaryMetrics.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Box.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Calibration.Box.Rd | 19 AutoPlots-1.5.0/AutoPlots/man/Plot.Calibration.Line.Rd | 19 AutoPlots-1.5.0/AutoPlots/man/Plot.ConfusionMatrix.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Copula.Rd | 31 AutoPlots-1.5.0/AutoPlots/man/Plot.Copula3D.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.CorrMatrix.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.Density.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Donut.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Gains.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.HeatMap.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.Histogram.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Lift.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Line.Rd | 39 AutoPlots-1.5.0/AutoPlots/man/Plot.PACF.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.Parallel.Rd | 34 AutoPlots-1.5.0/AutoPlots/man/Plot.PartialDependence.Box.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.PartialDependence.HeatMap.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.PartialDependence.Line.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Pie.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.ProbabilityPlot.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.ROC.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Radar.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Residuals.Histogram.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.Residuals.Scatter.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.River.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Rosetype.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.Scatter.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.Scatter3D.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.ShapImportance.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.StackedBar.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.Step.Rd | 35 AutoPlots-1.5.0/AutoPlots/man/Plot.VariableImportance.Rd | 17 AutoPlots-1.5.0/AutoPlots/man/Plot.WordCloud.Rd | 33 AutoPlots-1.5.0/AutoPlots/man/Plot.prROC.Rd |only AutoPlots-1.5.0/AutoPlots/man/ProbabilityPlot.Rd |only AutoPlots-1.5.0/AutoPlots/man/ROC.Rd |only AutoPlots-1.5.0/AutoPlots/man/Radar.Rd |only AutoPlots-1.5.0/AutoPlots/man/Residuals.Histogram.Rd |only AutoPlots-1.5.0/AutoPlots/man/Residuals.Scatter.Rd |only AutoPlots-1.5.0/AutoPlots/man/River.Rd |only AutoPlots-1.5.0/AutoPlots/man/Rosetype.Rd |only AutoPlots-1.5.0/AutoPlots/man/Scatter.Rd |only AutoPlots-1.5.0/AutoPlots/man/Scatter3D.Rd |only AutoPlots-1.5.0/AutoPlots/man/ShapImportance.Rd |only AutoPlots-1.5.0/AutoPlots/man/StackedBar.Rd |only AutoPlots-1.5.0/AutoPlots/man/Step.Rd |only AutoPlots-1.5.0/AutoPlots/man/VariableImportance.Rd |only AutoPlots-1.5.0/AutoPlots/man/WordCloud.Rd |only AutoPlots-1.5.0/AutoPlots/man/display_plots_grid.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_area_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_bar_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_boxplot_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_density_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_grid_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_heatmap_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_legend_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_parallel_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_title_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_toolbox_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_tooltip_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_visual_map_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_x_axis_full.Rd |only AutoPlots-1.5.0/AutoPlots/man/e_y_axis_full.Rd |only 106 files changed, 3102 insertions(+), 787 deletions(-)
Title: Indexed 'tibble' and Methods for 'dplyr'
Description: Provides extended data frames, with a special data frame column which contains two indexes, with potentially a nesting structure, and support for tibbles and methods for 'dplyr'.
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between tidydfidx versions 0.0-1 dated 2025-06-16 and 0.0-3 dated 2026-02-06
tidydfidx-0.0-1/tidydfidx/inst/doc/tidydfidx.pdf |only tidydfidx-0.0-3/tidydfidx/DESCRIPTION | 12 +-- tidydfidx-0.0-3/tidydfidx/MD5 | 14 ++-- tidydfidx-0.0-3/tidydfidx/NEWS.md | 8 ++ tidydfidx-0.0-3/tidydfidx/build/vignette.rds |binary tidydfidx-0.0-3/tidydfidx/inst/doc/tidydfidx.R | 24 ++----- tidydfidx-0.0-3/tidydfidx/inst/doc/tidydfidx.html |only tidydfidx-0.0-3/tidydfidx/inst/doc/tidydfidx.qmd | 74 +++++++++++----------- tidydfidx-0.0-3/tidydfidx/vignettes/tidydfidx.qmd | 74 +++++++++++----------- 9 files changed, 109 insertions(+), 97 deletions(-)
Title: Access to the 'RESOURCECODE' Hindcast Database
Description: Utility functions to download data from the 'RESOURCECODE'
hindcast database of sea-states, time series of sea-state parameters
and time series of 1D and 2D wave spectra. See
<https://resourcecode.ifremer.fr> for more details about the available
data. Also provides facilities to plot and analyse downloaded data,
such as computing the sea-state parameters from both the 1D and 2D
surface elevation variance spectral density.
Author: Nicolas Raillard [aut, cre]
Maintainer: Nicolas Raillard <nicolas.raillard@ifremer.fr>
Diff between resourcecode versions 0.5.2 dated 2026-01-09 and 0.5.3 dated 2026-02-06
resourcecode-0.5.2/resourcecode/tests/testthat/test-data_download.R |only resourcecode-0.5.3/resourcecode/DESCRIPTION | 16 resourcecode-0.5.3/resourcecode/MD5 | 43 resourcecode-0.5.3/resourcecode/NEWS.md | 8 resourcecode-0.5.3/resourcecode/R/download_data.R | 122 ++ resourcecode-0.5.3/resourcecode/R/spectral_data_download.R | 138 ++- resourcecode-0.5.3/resourcecode/R/utils.R | 39 resourcecode-0.5.3/resourcecode/README.md | 6 resourcecode-0.5.3/resourcecode/inst/doc/resourcecode.R | 64 - resourcecode-0.5.3/resourcecode/inst/doc/resourcecode.Rmd | 68 - resourcecode-0.5.3/resourcecode/inst/doc/resourcecode.html | 256 ++--- resourcecode-0.5.3/resourcecode/man/compute_sea_state_1d_spectrum.Rd | 4 resourcecode-0.5.3/resourcecode/man/get_1d_spectrum.Rd | 22 resourcecode-0.5.3/resourcecode/man/get_2d_spectrum.Rd | 12 resourcecode-0.5.3/resourcecode/man/get_parameters.Rd | 6 resourcecode-0.5.3/resourcecode/tests/testthat/Rplots.pdf |binary resourcecode-0.5.3/resourcecode/tests/testthat/_vcr |only resourcecode-0.5.3/resourcecode/tests/testthat/test-plot_1d_specta.R |only resourcecode-0.5.3/resourcecode/tests/testthat/test-spectral_data_download.R |only resourcecode-0.5.3/resourcecode/tests/testthat/test-test_cut_seasons.R | 438 ++++++++-- resourcecode-0.5.3/resourcecode/tests/testthat/tests_download_parameters.R |only resourcecode-0.5.3/resourcecode/vignettes/resourcecode.Rmd | 68 - 22 files changed, 841 insertions(+), 469 deletions(-)
More information about quickSentiment at CRAN
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Title: Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information
Description: Functions to read in the geometry format under the
'Neuroimaging' 'Informatics' Technology Initiative ('NIfTI'), called
'GIFTI' <https://www.nitrc.org/projects/gifti/>.
These files contain surfaces of brain imaging data.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between gifti versions 0.8.0 dated 2020-11-11 and 0.9.0 dated 2026-02-06
DESCRIPTION | 16 +- MD5 | 22 +-- NEWS.md | 6 R/data_encoder.R | 9 - R/read_gifti.R | 4 README.md | 10 - build/vignette.rds |binary inst/doc/Reading_GIFTI_Files.R | 76 +++++------ inst/doc/Reading_GIFTI_Files.Rmd | 8 - inst/doc/Reading_GIFTI_Files.html | 241 ++++++++++++++++++-------------------- man/readgii.Rd | 4 vignettes/Reading_GIFTI_Files.Rmd | 8 - 12 files changed, 195 insertions(+), 209 deletions(-)
Title: Resource Resolver
Description: A resource represents some data or a computation unit. It is
described by a URL and credentials. This package proposes a Resource model
with "resolver" and "client" classes to facilitate the access and the usage of the
resources.
Author: Yannick Marcon [aut, cre] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between resourcer versions 1.4.0 dated 2023-04-25 and 1.5.0 dated 2026-02-06
DESCRIPTION | 18 + MD5 | 20 +- R/DBIResourceConnector.R | 9 R/PostgresResourceConnector.R | 19 +- README.md | 14 - build/vignette.rds |binary inst/doc/resources-introduction.R | 58 +++--- inst/doc/resources-introduction.Rmd | 6 inst/doc/resources-introduction.html | 323 ++++++++++++++++++++--------------- inst/resources/resource.js | 108 +++++------ vignettes/resources-introduction.Rmd | 6 11 files changed, 330 insertions(+), 251 deletions(-)
Title: Solve for Leaf Temperature Using Energy Balance
Description: Implements models of leaf temperature using energy balance. It uses units to ensure that parameters are properly specified and transformed before calculations. It allows separate lower and upper surface conductances to heat and water vapour, so sensible and latent heat loss are calculated for each surface separately as in Foster and Smith (1986) <doi:10.1111/j.1365-3040.1986.tb02108.x>. It's straightforward to model leaf temperature over environmental gradients such as light, air temperature, humidity, and wind. It can also model leaf temperature over trait gradients such as leaf size or stomatal conductance. Other references are Monteith and Unsworth (2013, ISBN:9780123869104), Nobel (2009, ISBN:9780123741431), and Okajima et al. (2012) <doi:10.1007/s11284-011-0905-5>.
Author: Chris Muir [aut, cre]
Maintainer: Chris Muir <cdmuir@wisc.edu>
Diff between tealeaves versions 1.0.6.1 dated 2025-06-23 and 1.0.7 dated 2026-02-06
DESCRIPTION | 23 +++++++------ MD5 | 44 ++++++++++++------------- NEWS.md | 7 ++++ R/constants.R | 14 ++++---- R/enviro-par.R | 14 ++++---- R/leaf-par.R | 14 ++++---- R/make_parameters.R | 1 R/tealeaves.R | 4 +- R/tleaves.R | 48 ++++++++++++++++++--------- README.md | 61 +++++++++++++++++------------------ build/vignette.rds |binary data/tl_example1.rda |binary inst/CITATION | 10 ++--- inst/doc/parameter-functions.html | 18 +++++----- inst/doc/tealeaves-intermediate.html | 8 ++-- inst/doc/tealeaves-introduction.Rmd | 2 - inst/doc/tealeaves-introduction.html | 30 ++++++++--------- man/constants.Rd | 11 ++++-- man/dot-get_ps.Rd | 2 - man/enviro_par.Rd | 11 ++++-- man/leaf_par.Rd | 11 ++++-- man/tealeaves.Rd | 15 ++++++++ vignettes/tealeaves-introduction.Rmd | 2 - 23 files changed, 206 insertions(+), 144 deletions(-)
Title: Simulate Disease Outbreak Line List and Contacts Data
Description: Tools to simulate realistic raw case data for an epidemic in
the form of line lists and contacts using a branching process.
Simulated outbreaks are parameterised with epidemiological parameters
and can have age-structured populations, age-stratified
hospitalisation and death risk and time-varying case fatality risk.
Author: Joshua W. Lambert [aut, cre, cph] ,
Carmen Tamayo Cuartero [aut] ,
Hugo Gruson [ctb, rev] ,
Pratik R. Gupte [ctb, rev] ,
Adam Kucharski [rev] ,
Chris Hartgerink [rev] ,
Sebastian Funk [ctb] ,
London School of Hygiene and Tropical Medicine, LSHTM [cph [...truncated...]
Maintainer: Joshua W. Lambert <joshua.lambert@lshtm.ac.uk>
Diff between simulist versions 0.6.0 dated 2025-08-28 and 0.7.0 dated 2026-02-06
DESCRIPTION | 8 LICENSE | 2 MD5 | 122 +- NEWS.md | 32 R/add_cols.R | 23 R/checkers.R | 21 R/create_config.R | 18 R/messy_linelist.R | 4 R/sim_contacts.R | 4 R/sim_internal.R | 20 R/sim_linelist.R | 20 R/sim_outbreak.R | 13 R/utils.R | 25 README.md | 166 +- build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/age-strat-risks.R | 2 inst/doc/age-strat-risks.html | 153 +- inst/doc/age-struct-pop.html | 70 - inst/doc/design-principles.html | 2 inst/doc/reporting-delays-truncation.R | 28 inst/doc/reporting-delays-truncation.Rmd | 28 inst/doc/reporting-delays-truncation.html | 212 +-- inst/doc/simulist.R | 12 inst/doc/simulist.Rmd | 12 inst/doc/simulist.html | 395 +++--- inst/doc/time-varying-cfr.R | 29 inst/doc/time-varying-cfr.Rmd | 31 inst/doc/time-varying-cfr.html | 205 +-- inst/doc/vis-linelist.R | 111 + inst/doc/vis-linelist.Rmd | 124 +- inst/doc/vis-linelist.html | 542 +++++---- inst/doc/wrangling-linelist.R | 12 inst/doc/wrangling-linelist.Rmd | 14 inst/doc/wrangling-linelist.html | 363 +++--- man/create_config.Rd | 9 man/dot-add_cols.Rd | 15 man/dot-check_sim_input.Rd | 16 man/dot-sim_internal.Rd | 7 man/figures/simulist_archi.svg | 81 - man/sim_contacts.Rd | 2 man/sim_linelist.Rd | 13 man/sim_outbreak.Rd | 13 man/simulist-package.Rd | 2 tests/testthat/_snaps/sim_contacts.md | 294 ++-- tests/testthat/_snaps/sim_linelist.md | 972 ++++++++-------- tests/testthat/_snaps/sim_outbreak.md | 1798 +++++++++++++++--------------- tests/testthat/test-add_cols.R | 34 tests/testthat/test-checkers.R | 39 tests/testthat/test-create_config.R | 46 tests/testthat/test-messy_linelist.R | 2 tests/testthat/test-sim_contacts.R | 8 tests/testthat/test-sim_linelist.R | 49 tests/testthat/test-sim_network_bp.R | 4 tests/testthat/test-sim_outbreak.R | 10 tests/testthat/test-truncate_linelist.R | 6 vignettes/reporting-delays-truncation.Rmd | 28 vignettes/simulist.Rmd | 12 vignettes/time-varying-cfr.Rmd | 31 vignettes/vis-linelist.Rmd | 124 +- vignettes/wrangling-linelist.Rmd | 14 62 files changed, 3486 insertions(+), 2969 deletions(-)
Title: Longitudinal Sequential Imputation and Prediction with Bayesian
Trees Mixed-Effects Models for Longitudinal Data
Description: Implements a sequential imputation framework using Bayesian Mixed-Effects Trees ('SBMTrees') for handling missing data in longitudinal studies. The package supports a variety of models, including non-linear relationships and non-normal random effects and residuals, leveraging Dirichlet Process priors for increased flexibility. Key features include handling Missing at Random (MAR) longitudinal data, imputation of both covariates and outcomes, and generating posterior predictive samples for further analysis. The methodology is designed for applications in epidemiology, biostatistics, and other fields requiring robust handling of missing data in longitudinal settings.
Author: Jungang Zou [aut, cre],
Liangyuan Hu [aut],
Robert McCulloch [ctb],
Rodney Sparapani [ctb],
Charles Spanbauer [ctb],
Robert Gramacy [ctb],
Jean-Sebastien Roy [ctb]
Maintainer: Jungang Zou <jungang.zou@gmail.com>
This is a re-admission after prior archival of version 1.2 dated 2024-12-11
Diff between SBMTrees versions 1.2 dated 2024-12-11 and 1.4 dated 2026-02-06
SBMTrees-1.2/SBMTrees/man/simulation_prediction.Rd |only SBMTrees-1.2/SBMTrees/src/BART/bart.cpp |only SBMTrees-1.2/SBMTrees/src/BART/bd.cpp |only SBMTrees-1.4/SBMTrees/DESCRIPTION | 24 SBMTrees-1.4/SBMTrees/MD5 | 85 - SBMTrees-1.4/SBMTrees/NAMESPACE | 28 SBMTrees-1.4/SBMTrees/NEWS.md | 6 SBMTrees-1.4/SBMTrees/R/BMTrees_prediction.R | 238 +++ SBMTrees-1.4/SBMTrees/R/RcppExports.R | 50 SBMTrees-1.4/SBMTrees/R/Rcpp_function.R | 55 SBMTrees-1.4/SBMTrees/R/sequential_imputation.R | 328 ++--- SBMTrees-1.4/SBMTrees/R/simulation_imputation.R | 890 ++++++++------ SBMTrees-1.4/SBMTrees/R/simulation_prediction.R | 540 ++++---- SBMTrees-1.4/SBMTrees/README.md | 48 SBMTrees-1.4/SBMTrees/build/vignette.rds |binary SBMTrees-1.4/SBMTrees/inst/doc/SBMTrees_Introduction.R | 95 - SBMTrees-1.4/SBMTrees/inst/doc/SBMTrees_Introduction.Rmd | 101 - SBMTrees-1.4/SBMTrees/inst/doc/SBMTrees_Introduction.html | 269 +--- SBMTrees-1.4/SBMTrees/man/BMLMM_prediction.Rd |only SBMTrees-1.4/SBMTrees/man/BMTrees_prediction.Rd | 51 SBMTrees-1.4/SBMTrees/man/SBMTrees-package.Rd | 51 SBMTrees-1.4/SBMTrees/man/apply_locf_nocb.Rd | 47 SBMTrees-1.4/SBMTrees/man/sequential_imputation.Rd | 68 - SBMTrees-1.4/SBMTrees/man/simulation_imputation.Rd | 89 - SBMTrees-1.4/SBMTrees/man/simulation_imputation_LTFU.Rd |only SBMTrees-1.4/SBMTrees/man/simulation_prediction_binary.Rd |only SBMTrees-1.4/SBMTrees/man/simulation_prediction_conti.Rd |only SBMTrees-1.4/SBMTrees/src/BART/bart.h | 113 + SBMTrees-1.4/SBMTrees/src/BART/bartfuns.cpp | 261 ---- SBMTrees-1.4/SBMTrees/src/BART/bartfuns.h | 276 ++++ SBMTrees-1.4/SBMTrees/src/BART/bd.h | 365 +++++ SBMTrees-1.4/SBMTrees/src/BART/heterbart.h |only SBMTrees-1.4/SBMTrees/src/BART/heterbartfuns.h |only SBMTrees-1.4/SBMTrees/src/BART/heterbd.h |only SBMTrees-1.4/SBMTrees/src/BART/lambda.cpp |only SBMTrees-1.4/SBMTrees/src/BART/lambda.h | 75 - SBMTrees-1.4/SBMTrees/src/BART/rn.h | 8 SBMTrees-1.4/SBMTrees/src/BART/treefuns.cpp | 13 SBMTrees-1.4/SBMTrees/src/BART/treefuns.h | 13 SBMTrees-1.4/SBMTrees/src/DP_lambda.h | 234 +++ SBMTrees-1.4/SBMTrees/src/RcppExports.cpp | 182 ++ SBMTrees-1.4/SBMTrees/src/bart_model.h | 691 ++++++---- SBMTrees-1.4/SBMTrees/src/bm.h |only SBMTrees-1.4/SBMTrees/src/bmlmm.h |only SBMTrees-1.4/SBMTrees/src/bmtrees.h | 609 --------- SBMTrees-1.4/SBMTrees/src/cal_random_effects.h | 161 ++ SBMTrees-1.4/SBMTrees/src/sequential_imputation.cpp | 887 +++++++++++-- SBMTrees-1.4/SBMTrees/src/update_B.h | 21 SBMTrees-1.4/SBMTrees/src/utils.h | 123 + SBMTrees-1.4/SBMTrees/vignettes/SBMTrees_Introduction.Rmd | 101 - 50 files changed, 4269 insertions(+), 2927 deletions(-)
Title: Functions for Generating Restricted Permutations of Data
Description: A set of restricted permutation designs for freely exchangeable, line transects (time series), and spatial grid designs plus permutation of blocks (groups of samples) is provided. 'permute' also allows split-plot designs, in which the whole-plots or split-plots or both can be freely-exchangeable or one of the restricted designs. The 'permute' package is modelled after the permutation schemes of 'Canoco 3.1' (and later) by Cajo ter Braak.
Author: Gavin L. Simpson [aut, cph, cre] ,
R Core Team [cph],
Douglas M. Bates [ctb],
Jari Oksanen [ctb]
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between permute versions 0.9-8 dated 2025-06-25 and 0.9-10 dated 2026-02-06
permute-0.9-10/permute/DESCRIPTION | 8 - permute-0.9-10/permute/MD5 | 22 ++--- permute-0.9-10/permute/NEWS.md |only permute-0.9-10/permute/R/numPerms.R | 6 - permute-0.9-10/permute/build/vignette.rds |binary permute-0.9-10/permute/inst/doc/permutations.R | 2 permute-0.9-10/permute/inst/doc/permutations.Rmd | 14 +-- permute-0.9-10/permute/inst/doc/permutations.html | 74 +++++++++--------- permute-0.9-10/permute/man/get-methods.Rd | 2 permute-0.9-10/permute/man/shuffleSet.Rd | 4 permute-0.9-10/permute/tests/testthat/test-numPerms.R | 31 ++++++- permute-0.9-10/permute/vignettes/permutations.Rmd | 14 +-- permute-0.9-8/permute/inst/NEWS |only 13 files changed, 100 insertions(+), 77 deletions(-)
Title: SQLite Interface for R
Description: Embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the SQLite
engine (version 3.51.2) and for various extensions is included.
System libraries will never be consulted because this package relies
on static linking for the plugins it includes; this also ensures a
consistent experience across all installations.
Author: Kirill Mueller [aut, cre] ,
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
D. Richard Hipp [ctb] ,
Dan Kennedy [ctb] ,
Joe Mistachkin [ctb] ,
SQLite Authors [ctb] ,
Liam Healy [ctb] ,
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RSQLite versions 2.4.5 dated 2025-11-30 and 2.4.6 dated 2026-02-06
DESCRIPTION | 12 +- MD5 | 92 ++++++++--------- NEWS.md | 13 ++ R/cpp11.R | 4 build/vignette.rds |binary src/DbColumn.cpp | 46 +++++--- src/DbColumn.h | 10 + src/DbColumnDataSource.cpp | 8 - src/DbColumnDataSource.h | 2 src/DbColumnDataSourceFactory.cpp | 6 - src/DbColumnDataSourceFactory.h | 2 src/DbColumnDataType.h | 2 src/DbColumnStorage.cpp | 91 ++++++++++------ src/DbColumnStorage.h | 11 +- src/DbConnection.cpp | 41 ++++--- src/DbConnection.h | 14 +- src/DbDataFrame.cpp | 48 ++++++-- src/DbDataFrame.h | 13 +- src/DbResult.cpp | 19 +-- src/DbResult.h | 3 src/RSQLite.h | 2 src/RSQLite_types.h | 15 +- src/SqliteColumnDataSource.cpp | 128 ++++++++++++----------- src/SqliteColumnDataSource.h | 9 + src/SqliteColumnDataSourceFactory.cpp | 13 +- src/SqliteColumnDataSourceFactory.h | 2 src/SqliteDataFrame.cpp | 22 ++-- src/SqliteDataFrame.h | 11 +- src/SqliteResult.cpp | 13 +- src/SqliteResult.h | 5 src/SqliteResultImpl.cpp | 183 ++++++++++++++++------------------ src/SqliteResultImpl.h | 5 src/affinity.c | 83 ++++++++------- src/affinity.h | 14 +- src/connection.cpp | 70 ++++++++----- src/cpp11.cpp | 9 - src/ext-math.c | 3 src/extensions.cpp | 14 ++ src/import-file.c | 92 +++++++++-------- src/integer64.h | 2 src/result.cpp | 8 - src/rsqlite.cpp | 13 -- src/sqlite3-cpp.h | 4 src/vendor/extensions/csv.c | 16 +- src/vendor/extensions/regexp.c | 28 +++-- src/vendor/sqlite3/sqlite3.c | 160 ++++++++++++++++++----------- src/vendor/sqlite3/sqlite3.h | 10 - 47 files changed, 777 insertions(+), 594 deletions(-)
Title: An 'Rcpp' Interface to Active Bindings
Description: Provides an easy way to fill an environment with active
bindings that call a C++ function.
Author: Kirill Mueller [aut, cre] ,
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between bindrcpp versions 0.2.3 dated 2023-12-11 and 0.2.4 dated 2026-02-06
bindrcpp-0.2.3/bindrcpp/man/init_logging.Rd |only bindrcpp-0.2.3/bindrcpp/src/plogr.cpp |only bindrcpp-0.2.4/bindrcpp/DESCRIPTION | 15 +- bindrcpp-0.2.4/bindrcpp/MD5 | 16 +-- bindrcpp-0.2.4/bindrcpp/NEWS.md | 9 + bindrcpp-0.2.4/bindrcpp/R/RcppExports.R | 13 -- bindrcpp-0.2.4/bindrcpp/man/bindrcpp-package.Rd | 2 bindrcpp-0.2.4/bindrcpp/src/RcppExports.cpp | 35 ++---- bindrcpp-0.2.4/bindrcpp/src/create.cpp | 122 +++++++++++++++++++----- bindrcpp-0.2.4/bindrcpp/src/test.cpp | 92 +++++++++++------- 10 files changed, 195 insertions(+), 109 deletions(-)
Title: Focus-Glue-Context Fisheye Transformations for Spatial
Visualization
Description: Focus-glue-context (FGC) fisheye transformations to two-dimensional coordinates and spatial vector geometries. Implements a smooth radial distortion that enlarges a focal region, transitions through a glue ring, and preserves outside context. Methods build on generalized fisheye views and focus+context mapping. For more details see Furnas (1986) <doi:10.1145/22339.22342>, Furnas (2006) <doi:10.1145/1124772.1124921> and Yamamoto et al. (2009) <doi:10.1145/1653771.1653788>.
Author: Alex Nguyen [aut, cre, cph],
Dianne Cook [aut] ,
Michael Lydeamore [aut]
Maintainer: Alex Nguyen <thanhcuong10091992@gmail.com>
Diff between mapycusmaximus versions 1.0.0 dated 2025-12-19 and 1.0.7 dated 2026-02-06
mapycusmaximus-1.0.0/mapycusmaximus/inst/doc/Mapycus.R |only mapycusmaximus-1.0.0/mapycusmaximus/inst/doc/Mapycus.Rmd |only mapycusmaximus-1.0.0/mapycusmaximus/inst/doc/Mapycus.html |only mapycusmaximus-1.0.0/mapycusmaximus/vignettes/Mapycus.Rmd |only mapycusmaximus-1.0.7/mapycusmaximus/DESCRIPTION | 11 mapycusmaximus-1.0.7/mapycusmaximus/MD5 | 38 + mapycusmaximus-1.0.7/mapycusmaximus/NAMESPACE | 71 +-- mapycusmaximus-1.0.7/mapycusmaximus/NEWS.md | 23 + mapycusmaximus-1.0.7/mapycusmaximus/R/fisheye_fgc.R | 2 mapycusmaximus-1.0.7/mapycusmaximus/R/sf_fisheye.R | 23 - mapycusmaximus-1.0.7/mapycusmaximus/R/shiny_fisheye.R |only mapycusmaximus-1.0.7/mapycusmaximus/R/utils.R | 217 ++++++++++ mapycusmaximus-1.0.7/mapycusmaximus/build/vignette.rds |binary mapycusmaximus-1.0.7/mapycusmaximus/data/conn_fish.rda |binary mapycusmaximus-1.0.7/mapycusmaximus/data/vic.rda |binary mapycusmaximus-1.0.7/mapycusmaximus/data/vic_fish.rda |binary mapycusmaximus-1.0.7/mapycusmaximus/inst/doc/mapycusmaximus-vignette.R |only mapycusmaximus-1.0.7/mapycusmaximus/inst/doc/mapycusmaximus-vignette.Rmd |only mapycusmaximus-1.0.7/mapycusmaximus/inst/doc/mapycusmaximus-vignette.html |only mapycusmaximus-1.0.7/mapycusmaximus/inst/shiny_app |only mapycusmaximus-1.0.7/mapycusmaximus/man/fisheye_fgc.Rd | 150 +++--- mapycusmaximus-1.0.7/mapycusmaximus/man/lines_from_sf.Rd |only mapycusmaximus-1.0.7/mapycusmaximus/man/points_from_sf.Rd |only mapycusmaximus-1.0.7/mapycusmaximus/man/polygons_from_sf.Rd |only mapycusmaximus-1.0.7/mapycusmaximus/man/sf_fisheye.Rd | 11 mapycusmaximus-1.0.7/mapycusmaximus/man/shiny_fisheye.Rd |only mapycusmaximus-1.0.7/mapycusmaximus/vignettes/mapycusmaximus-vignette.Rmd |only 27 files changed, 387 insertions(+), 159 deletions(-)
More information about mapycusmaximus at CRAN
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Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 2.3.5 dated 2022-08-17 and 3.0.10 dated 2026-02-06
tweedie-2.3.5/tweedie/R/tweedie.R |only tweedie-2.3.5/tweedie/man/AICtweedie.Rd |only tweedie-2.3.5/tweedie/man/dtweedie.Rd |only tweedie-2.3.5/tweedie/man/dtweedie.dldphi.Rd |only tweedie-2.3.5/tweedie/man/dtweedie.saddle.Rd |only tweedie-2.3.5/tweedie/man/logLik.tweedie.Rd |only tweedie-2.3.5/tweedie/man/tweedie-internal.Rd |only tweedie-2.3.5/tweedie/man/tweedie.convert.Rd |only tweedie-2.3.5/tweedie/man/tweedie.dev.Rd |only tweedie-2.3.5/tweedie/man/tweedie.plot.Rd |only tweedie-2.3.5/tweedie/man/tweedie.profile.Rd |only tweedie-2.3.5/tweedie/src/tweedie.f |only tweedie-3.0.10/tweedie/DESCRIPTION | 22 +-- tweedie-3.0.10/tweedie/MD5 | 102 +++++++++++--- tweedie-3.0.10/tweedie/NAMESPACE | 67 +++++++-- tweedie-3.0.10/tweedie/NEWS.md | 67 ++++++++- tweedie-3.0.10/tweedie/R/dtweedie_interpolation.R |only tweedie-3.0.10/tweedie/R/dtweedie_inversion.R |only tweedie-3.0.10/tweedie/R/dtweedie_saddle.R |only tweedie-3.0.10/tweedie/R/dtweedie_series.R |only tweedie-3.0.10/tweedie/R/logLiktweedie.R |only tweedie-3.0.10/tweedie/R/ptweedie_inversion.R |only tweedie-3.0.10/tweedie/R/ptweedie_series.R |only tweedie-3.0.10/tweedie/R/tweedie-internals.R |only tweedie-3.0.10/tweedie/R/tweedie-package.R |only tweedie-3.0.10/tweedie/R/tweedie_AIC.R |only tweedie-3.0.10/tweedie/R/tweedie_convert.R |only tweedie-3.0.10/tweedie/R/tweedie_dev.R |only tweedie-3.0.10/tweedie/R/tweedie_dpqr.R |only tweedie-3.0.10/tweedie/R/tweedie_integrand.R |only tweedie-3.0.10/tweedie/R/tweedie_lambda.R |only tweedie-3.0.10/tweedie/R/tweedie_plot.R |only tweedie-3.0.10/tweedie/R/tweedie_profile.R |only tweedie-3.0.10/tweedie/R/utils.R |only tweedie-3.0.10/tweedie/R/zzz.R |only tweedie-3.0.10/tweedie/README.md |only tweedie-3.0.10/tweedie/build/partial.rdb |binary tweedie-3.0.10/tweedie/build/vignette.rds |only tweedie-3.0.10/tweedie/cleanup |only tweedie-3.0.10/tweedie/configure |only tweedie-3.0.10/tweedie/configure.win |only tweedie-3.0.10/tweedie/inst/CITATION | 18 +- tweedie-3.0.10/tweedie/inst/doc |only tweedie-3.0.10/tweedie/man/Tweedie.Rd |only tweedie-3.0.10/tweedie/man/dtweedie_inversion.Rd |only tweedie-3.0.10/tweedie/man/dtweedie_saddle.Rd |only tweedie-3.0.10/tweedie/man/dtweedie_series.Rd |only tweedie-3.0.10/tweedie/man/figures |only tweedie-3.0.10/tweedie/man/logLiktweedie.Rd |only tweedie-3.0.10/tweedie/man/ptweedie_inversion.Rd |only tweedie-3.0.10/tweedie/man/ptweedie_series.Rd |only tweedie-3.0.10/tweedie/man/tweedie-package.Rd | 83 +---------- tweedie-3.0.10/tweedie/man/tweedie_AIC.Rd |only tweedie-3.0.10/tweedie/man/tweedie_convert.Rd |only tweedie-3.0.10/tweedie/man/tweedie_dev.Rd |only tweedie-3.0.10/tweedie/man/tweedie_integrand.Rd |only tweedie-3.0.10/tweedie/man/tweedie_lambda.Rd |only tweedie-3.0.10/tweedie/man/tweedie_plot.Rd |only tweedie-3.0.10/tweedie/man/tweedie_profile.Rd |only tweedie-3.0.10/tweedie/src/00tweedie_params.f90 |only tweedie-3.0.10/tweedie/src/Calcs_Imag.f90 |only tweedie-3.0.10/tweedie/src/Calcs_K.f90 |only tweedie-3.0.10/tweedie/src/Calcs_Real.f90 |only tweedie-3.0.10/tweedie/src/Calcs_Solvers.f90 |only tweedie-3.0.10/tweedie/src/GaussQuadrature.f90 |only tweedie-3.0.10/tweedie/src/Integrands.f90 |only tweedie-3.0.10/tweedie/src/Makevars-Working.makefile |only tweedie-3.0.10/tweedie/src/Makevars-WorksOnLinux.makefile |only tweedie-3.0.10/tweedie/src/Makevars-workingOnMac.makefile |only tweedie-3.0.10/tweedie/src/Makevars.in |only tweedie-3.0.10/tweedie/src/Makevars.win |only tweedie-3.0.10/tweedie/src/R_interfaces.f90 |only tweedie-3.0.10/tweedie/src/Rprintf_wrapper.c |only tweedie-3.0.10/tweedie/src/TweedieIntZones.f90 |only tweedie-3.0.10/tweedie/src/TweedieIntegration.f90 |only tweedie-3.0.10/tweedie/src/TweedieIntegration.f90HIDING |only tweedie-3.0.10/tweedie/src/accelerate.f90 |only tweedie-3.0.10/tweedie/src/findAccelStart.f90 |only tweedie-3.0.10/tweedie/src/gaussianData.f90 |only tweedie-3.0.10/tweedie/src/init.c | 26 +-- tweedie-3.0.10/tweedie/src/rprintf_mod.f90 |only tweedie-3.0.10/tweedie/src/twcomputation.f90 |only tweedie-3.0.10/tweedie/src/twcomputation_main.f90 |only tweedie-3.0.10/tweedie/tests |only tweedie-3.0.10/tweedie/vignettes |only 85 files changed, 245 insertions(+), 140 deletions(-)
Title: Solvers for Initial Value Problems of Differential Equations
('ODE', 'DAE', 'DDE')
Description: Functions that solve initial value problems of a system
of first-order ordinary differential equations ('ODE'), of
partial differential equations ('PDE'), of differential
algebraic equations ('DAE'), and of delay differential
equations. The functions provide an interface to the FORTRAN
functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK'
collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk'
and a C-implementation of solvers of the 'Runge-Kutta' family with
fixed or variable time steps. The package contains routines
designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D
partial differential equations ('PDE') that have been converted
to 'ODEs' by numerical differencing.
Author: Karline Soetaert [aut] ,
Thomas Petzoldt [aut, cre] ,
R. Woodrow Setzer [aut] ,
Peter N. Brown [ctb] ,
George D. Byrne [ctb] ,
Ernst Hairer [ctb] ,
Alan C. Hindmarsh [ctb] ,
Cleve Moler [ctb] ,
Linda R. Petzold [ctb] ,
Youcef Saad [ctb] ,
Clement W. [...truncated...]
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between deSolve versions 1.40 dated 2023-11-27 and 1.41 dated 2026-02-06
DESCRIPTION | 18 MD5 | 74 - NEWS.md | 6 R/DLLfunc.R | 358 +++--- R/checkevents.R | 382 +++--- R/cleanEventTimes.R | 58 - R/daspk.R | 1112 +++++++++---------- R/diagnostics.R | 376 +++--- R/euler.R | 300 ++--- R/forcings.R | 314 ++--- R/lsoda.R | 8 R/lsodar.R | 10 R/lsode.R | 652 +++++------ R/lsodes.R | 844 +++++++-------- R/matplot.R | 754 ++++++------- R/radau.R | 644 +++++------ R/rk.R | 472 ++++---- R/rk4.R | 216 +-- R/rkMethod.R | 780 ++++++------- build/partial.rdb |binary build/vignette.rds |binary data/ccl4data.rda |binary inst/CITATION | 44 inst/doc/compiledCode.R | 706 ++++++------ inst/doc/compiledCode.Rnw | 36 inst/doc/compiledCode.pdf |binary inst/doc/deSolve.R | 2074 ++++++++++++++++++------------------- inst/doc/deSolve.Rnw | 9 inst/doc/deSolve.pdf |binary inst/doc/dynload-dede/dede_lv.R | 124 +- inst/doc/dynload-dede/dede_lv2.R | 178 +-- inst/doc/dynload-dede/dedesimple.R | 122 +- inst/doc/dynload/radaudaedll.R | 160 +- man/deSolve.Rd | 6 man/rkMethod.Rd | 606 +++++----- vignettes/compiledCode.Rnw | 36 vignettes/deSolve.Rnw | 9 vignettes/integration.bib | 113 -- 38 files changed, 5805 insertions(+), 5796 deletions(-)
Title: Simulate and Plot Estimates from Cox Proportional Hazards Models
Description: Simulates and plots quantities of interest (relative
hazards, first differences, and hazard ratios) for linear coefficients,
multiplicative interactions, polynomials, penalised splines, and
non-proportional hazards, as well as stratified survival curves from Cox
Proportional Hazard models. It also simulates and plots marginal effects
for multiplicative interactions. Methods described in Gandrud (2015)
<doi:10.18637/jss.v065.i03>.
Author: Christopher Gandrud [aut, cre]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between simPH versions 1.3.14 dated 2025-04-18 and 1.3.15 dated 2026-02-06
simPH-1.3.14/simPH/data/CarpenterFdaData.tab |only simPH-1.3.14/simPH/data/GolubEUPData.tab |only simPH-1.3.15/simPH/DESCRIPTION | 16 ++--- simPH-1.3.15/simPH/MD5 | 32 +++++------ simPH-1.3.15/simPH/NAMESPACE | 8 -- simPH-1.3.15/simPH/NEWS | 10 +++ simPH-1.3.15/simPH/R/IntervalConstrict.R | 4 - simPH-1.3.15/simPH/R/MinMaxLines.R | 10 +-- simPH-1.3.15/simPH/R/coxsimPoly.R | 5 - simPH-1.3.15/simPH/README.md | 4 - simPH-1.3.15/simPH/build/partial.rdb |binary simPH-1.3.15/simPH/data/CarpenterFdaData.tab.gz |only simPH-1.3.15/simPH/data/GolubEUPData.tab.gz |only simPH-1.3.15/simPH/man/coxsimInteract.Rd | 2 simPH-1.3.15/simPH/man/coxsimLinear.Rd | 2 simPH-1.3.15/simPH/man/coxsimPoly.Rd | 2 simPH-1.3.15/simPH/man/coxsimSpline.Rd | 2 simPH-1.3.15/simPH/man/coxsimtvc.Rd | 2 simPH-1.3.15/simPH/tests/testthat/test-MinMaxLines.R |only simPH-1.3.15/simPH/tests/testthat/test-dplyr-compatibility.R |only 20 files changed, 51 insertions(+), 48 deletions(-)
Title: GroundWater Spatiotemporal Data Analysis Tool (GWSDAT)
Description: Shiny application for the analysis of groundwater
monitoring data, designed to work with simple time-series data for
solute concentration and ground water elevation, but can also plot
non-aqueous phase liquid (NAPL) thickness if required. Also provides
the import of a site basemap in GIS shapefile format.
Author: Wayne Jones [aut, cre]
Maintainer: Wayne Jones <wayne.w.jones@shell.com>
Diff between GWSDAT versions 3.2.1 dated 2024-03-04 and 3.3.0 dated 2026-02-06
GWSDAT-3.2.1/GWSDAT/inst/extdata/GWSDAT-v3.10.xlam |only GWSDAT-3.2.1/GWSDAT/inst/extdata/GWSDAT-v3.12.xlam |only GWSDAT-3.2.1/GWSDAT/inst/extdata/GWSDAT-v3.20.xlam |only GWSDAT-3.3.0/GWSDAT/DESCRIPTION | 15 GWSDAT-3.3.0/GWSDAT/MD5 | 133 GWSDAT-3.3.0/GWSDAT/NAMESPACE | 90 GWSDAT-3.3.0/GWSDAT/NEWS.md | 130 GWSDAT-3.3.0/GWSDAT/R/WellRedundancyUtils.R | 28 GWSDAT-3.3.0/GWSDAT/R/aggregateData.R | 205 GWSDAT-3.3.0/GWSDAT/R/calcGWFlow.R | 164 GWSDAT-3.3.0/GWSDAT/R/calcTrafficLights.R | 428 GWSDAT-3.3.0/GWSDAT/R/createOptions.R | 132 GWSDAT-3.3.0/GWSDAT/R/fitData.R | 166 GWSDAT-3.3.0/GWSDAT/R/fitPSpline.R | 648 GWSDAT-3.3.0/GWSDAT/R/global.R | 38 GWSDAT-3.3.0/GWSDAT/R/importTables.R | 316 GWSDAT-3.3.0/GWSDAT/R/interpBary.R | 219 GWSDAT-3.3.0/GWSDAT/R/interpConc.R | 347 GWSDAT-3.3.0/GWSDAT/R/jobqueue.R | 386 GWSDAT-3.3.0/GWSDAT/R/launchApp.R | 136 GWSDAT-3.3.0/GWSDAT/R/plotPlumeTimeSeries.R | 704 GWSDAT-3.3.0/GWSDAT/R/plotSTPredictions.R | 494 GWSDAT-3.3.0/GWSDAT/R/plotSpatialImage.R | 1424 - GWSDAT-3.3.0/GWSDAT/R/plotTimeSeries.R | 1046 - GWSDAT-3.3.0/GWSDAT/R/plotTrendTable.R | 690 GWSDAT-3.3.0/GWSDAT/R/plotWellReport.R | 492 GWSDAT-3.3.0/GWSDAT/R/plumeDiagnostics.R | 538 GWSDAT-3.3.0/GWSDAT/R/ppt.R | 220 GWSDAT-3.3.0/GWSDAT/R/predictValues.R | 80 GWSDAT-3.3.0/GWSDAT/R/processData.R | 972 - GWSDAT-3.3.0/GWSDAT/R/readData.R | 648 GWSDAT-3.3.0/GWSDAT/R/selectGamma.R | 232 GWSDAT-3.3.0/GWSDAT/R/server.R | 7599 +++++----- GWSDAT-3.3.0/GWSDAT/R/shapeFiles.R | 286 GWSDAT-3.3.0/GWSDAT/R/ui.R | 354 GWSDAT-3.3.0/GWSDAT/R/uiAnalyse.R | 86 GWSDAT-3.3.0/GWSDAT/R/uiAnalyseOptions.R | 264 GWSDAT-3.3.0/GWSDAT/R/uiAttr.R | 302 GWSDAT-3.3.0/GWSDAT/R/uiCustomColourKey.R | 64 GWSDAT-3.3.0/GWSDAT/R/uiDataManager.R | 794 - GWSDAT-3.3.0/GWSDAT/R/uiLogsJobs.R | 38 GWSDAT-3.3.0/GWSDAT/R/uiPlumeDiagnostics.R | 106 GWSDAT-3.3.0/GWSDAT/R/uiSTPredictions.R | 88 GWSDAT-3.3.0/GWSDAT/R/uiSession.R | 51 GWSDAT-3.3.0/GWSDAT/R/uiSpatialImage.R | 296 GWSDAT-3.3.0/GWSDAT/R/uiTimeSeries.R | 125 GWSDAT-3.3.0/GWSDAT/R/uiTrendTable.R | 157 GWSDAT-3.3.0/GWSDAT/R/uiWellReport.R | 84 GWSDAT-3.3.0/GWSDAT/R/user_db.R | 222 GWSDAT-3.3.0/GWSDAT/R/utilities.R | 358 GWSDAT-3.3.0/GWSDAT/inst/application/jqdb_pspline_fit.R | 168 GWSDAT-3.3.0/GWSDAT/inst/application/simple_pspline_fit.R | 66 GWSDAT-3.3.0/GWSDAT/inst/extdata/BasicExample_WellCoords.csv | 24 GWSDAT-3.3.0/GWSDAT/inst/extdata/BasicExample_WellData.csv | 1042 - GWSDAT-3.3.0/GWSDAT/inst/extdata/ComprehensiveExample_WellCoords.csv | 66 GWSDAT-3.3.0/GWSDAT/inst/extdata/ComprehensiveExample_WellData.csv | 3690 ++-- GWSDAT-3.3.0/GWSDAT/inst/extdata/CreatePackageExamples.R |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT-v3.30.xlam |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Basic_Example.rds |binary GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Basic_Example_V3.2.rds |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Example.rds |binary GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Example_V3.2.rds |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Examples.rds |binary GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDAT_Examples_V3.2.rds |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDATex2.cpg |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDATex2.dbf |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDATex2.shp |only GWSDAT-3.3.0/GWSDAT/inst/extdata/GWSDATex2.shx |only GWSDAT-3.3.0/GWSDAT/inst/extdata/Old_GWSDAT_Add-ins |only GWSDAT-3.3.0/GWSDAT/inst/www/google-analytics.js | 16 GWSDAT-3.3.0/GWSDAT/inst/www/jump_to_tsplot.js | 14 GWSDAT-3.3.0/GWSDAT/man/createOptions.Rd | 54 GWSDAT-3.3.0/GWSDAT/man/launchApp.Rd | 58 73 files changed, 14014 insertions(+), 13579 deletions(-)
Title: The Research Data Warehouse of Miguel de Carvalho
Description: Pulls together a collection of datasets from Miguel de Carvalho research articles and books. Including, for example:
- de Carvalho (2012) <doi:10.1016/j.jspi.2011.08.016>;
- de Carvalho et al (2012) <doi:10.1080/03610926.2012.709905>;
- de Carvalho et al (2012) <doi:10.1016/j.econlet.2011.09.007>);
- de Carvalho and Davison (2014) <doi:10.1080/01621459.2013.872651>;
- de Carvalho and Rua (2017) <doi:10.1016/j.ijforecast.2015.09.004>;
- de Carvalho et al (2023) <doi:10.1002/sta4.560>;
- de Carvalho et al (2022) <doi:10.1007/s13253-021-00469-9>;
- Palacios et al (2025) <doi:10.1214/24-BA1420>.
Author: Miguel de Carvalho [aut, cre]
Maintainer: Miguel de Carvalho <Miguel.deCarvalho@ed.ac.uk>
Diff between DATAstudio versions 1.2.1 dated 2025-03-29 and 1.2.2 dated 2026-02-06
DATAstudio-1.2.1/DATAstudio/data/california.RData |only DATAstudio-1.2.1/DATAstudio/data/hongkong.RData |only DATAstudio-1.2.1/DATAstudio/data/lisbon.RData |only DATAstudio-1.2.2/DATAstudio/DESCRIPTION | 14 +++--- DATAstudio-1.2.2/DATAstudio/MD5 | 40 +++++++++---------- DATAstudio-1.2.2/DATAstudio/R/dataset.R | 22 +++++++--- DATAstudio-1.2.2/DATAstudio/R/hidden.R | 6 ++ DATAstudio-1.2.2/DATAstudio/inst/CITATION | 2 DATAstudio-1.2.2/DATAstudio/man/DATAstudio.Rd | 38 ++++++++++++------ DATAstudio-1.2.2/DATAstudio/man/GDP.Rd | 2 DATAstudio-1.2.2/DATAstudio/man/GDPIP.Rd | 2 DATAstudio-1.2.2/DATAstudio/man/brainwave.Rd | 6 +- DATAstudio-1.2.2/DATAstudio/man/california.Rd | 12 +++-- DATAstudio-1.2.2/DATAstudio/man/claims.Rd | 2 DATAstudio-1.2.2/DATAstudio/man/dataset.Rd | 4 - DATAstudio-1.2.2/DATAstudio/man/figures/handbook.jpg |only DATAstudio-1.2.2/DATAstudio/man/hongkong.Rd | 11 +++-- DATAstudio-1.2.2/DATAstudio/man/hurricane.Rd | 4 - DATAstudio-1.2.2/DATAstudio/man/lisbon.Rd | 14 ++++-- DATAstudio-1.2.2/DATAstudio/man/marketsUS.Rd | 4 - DATAstudio-1.2.2/DATAstudio/man/sydney.Rd | 8 +-- DATAstudio-1.2.2/DATAstudio/man/unemployment.Rd | 2 DATAstudio-1.2.2/DATAstudio/man/wildfire.Rd | 2 23 files changed, 116 insertions(+), 79 deletions(-)
Title: Cardinal to Ordinal Number & Date Conversion
Description: Language specific cardinal to ordinal number conversion.
Author: Damian W. Betebenner [aut, cre],
Andrew Martin [ctb],
Jeff Erickson [ctb]
Maintainer: Damian W. Betebenner <dbetebenner@nciea.org>
Diff between toOrdinal versions 1.3-0.0 dated 2022-02-24 and 1.4-0.0 dated 2026-02-06
DESCRIPTION | 12 MD5 | 25 + NAMESPACE | 5 R/toOrdinal_Utility_Functions.R | 305 ++++++++++++----------- R/zzz.R | 48 +++ build/vignette.rds |binary inst/CITATION | 27 +- inst/NEWS | 3 inst/doc/toOrdinal.Rmd | 3 inst/doc/toOrdinal.html | 398 ++++++++++++++++++++++++------- man/toOrdinal-package.Rd | 4 tests/testthat/test_toOrdinal_dutch.R | 8 vignettes/releases/toOrdinal-1.3-0.0.Rmd |only vignettes/toOrdinal.Rmd | 3 14 files changed, 564 insertions(+), 277 deletions(-)
Title: Simulate Data from State Space Models
Description: Provides a streamlined and user-friendly framework
for simulating data in state space models,
particularly when the number of subjects/units (n) exceeds one,
a scenario commonly encountered in social and behavioral sciences.
This package was designed to generate data for the simulations
performed in Pesigan, Russell, and Chow (2025) <doi:10.1037/met0000779>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph] ,
Michael A. Russell [ctb] ,
Sy-Miin Chow [ctb]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between simStateSpace versions 1.2.14 dated 2026-01-10 and 1.2.15 dated 2026-02-06
DESCRIPTION | 6 - MD5 | 104 +++++++++++------------ NAMESPACE | 2 NEWS.md | 6 + R/RcppExports.R | 10 +- R/simStateSpace-sim-ssm-fixed.R | 2 R/simStateSpace-sim-ssm-lin-sde-fixed.R | 2 R/simStateSpace-sim-ssm-ou-fixed.R | 10 +- R/simStateSpace-sim-ssm-ou-i-vary.R | 4 R/simStateSpace-ssm-intercept-eta.R |only R/simStateSpace-ssm-intercept-y.R |only R/simStateSpace-ssm-mean-y.R | 5 - man/LinSDE2SSM.Rd | 4 man/LinSDECovEta.Rd | 2 man/LinSDECovY.Rd | 2 man/LinSDEMeanEta.Rd | 2 man/LinSDEMeanY.Rd | 2 man/ProjectToHurwitz.Rd | 2 man/ProjectToStability.Rd | 2 man/SSMCovEta.Rd | 2 man/SSMCovY.Rd | 2 man/SSMInterceptEta.Rd |only man/SSMInterceptY.Rd |only man/SSMMeanEta.Rd | 2 man/SSMMeanY.Rd | 2 man/SimAlphaN.Rd | 2 man/SimBetaN.Rd | 2 man/SimBetaN2.Rd | 2 man/SimBetaNCovariate.Rd | 2 man/SimCovDiagN.Rd | 2 man/SimCovN.Rd | 2 man/SimIotaN.Rd | 2 man/SimNuN.Rd | 2 man/SimPhiN.Rd | 2 man/SimPhiN2.Rd | 2 man/SimPhiNCovariate.Rd | 2 man/SimSSMFixed.Rd | 4 man/SimSSMIVary.Rd | 4 man/SimSSMLinGrowth.Rd | 4 man/SimSSMLinGrowthIVary.Rd | 6 + man/SimSSMLinSDEFixed.Rd | 4 man/SimSSMLinSDEIVary.Rd | 4 man/SimSSMOUFixed.Rd | 12 +- man/SimSSMOUIVary.Rd | 12 +- man/SimSSMVARFixed.Rd | 4 man/SimSSMVARIVary.Rd | 4 man/SpectralRadius.Rd | 2 man/TestPhi.Rd | 2 man/TestPhiHurwitz.Rd | 2 man/TestStability.Rd | 2 man/TestStationarity.Rd | 2 src/RcppExports.cpp | 27 +++++ src/source.cpp | 29 ++++++ tests/testthat/test-simStateSpace-ssm-mean-eta.R | 14 +++ tests/testthat/test-simStateSpace-ssm-mean-y.R | 15 +++ 55 files changed, 263 insertions(+), 87 deletions(-)
Title: C++ Interface to PostgreSQL
Description: Fully DBI-compliant C++-backed interface to PostgreSQL
<https://www.postgresql.org/>, an open-source relational database.
Author: Hadley Wickham [aut],
Jeroen Ooms [aut],
Kirill Mueller [aut, cre] ,
RStudio [cph],
R Consortium [fnd],
Tomoaki Nishiyama [ctb]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RPostgres versions 1.4.8 dated 2025-02-25 and 1.4.9 dated 2026-02-06
RPostgres-1.4.8/RPostgres/src/logging.cpp |only RPostgres-1.4.9/RPostgres/DESCRIPTION | 15 RPostgres-1.4.9/RPostgres/MD5 | 186 +++--- RPostgres-1.4.9/RPostgres/NAMESPACE | 1 RPostgres-1.4.9/RPostgres/NEWS.md | 21 RPostgres-1.4.9/RPostgres/R/PqConnection.R | 99 +++ RPostgres-1.4.9/RPostgres/R/PqResult.R | 40 + RPostgres-1.4.9/RPostgres/R/cpp11.R | 8 RPostgres-1.4.9/RPostgres/R/dbAppendTable_PqConnection.R | 9 RPostgres-1.4.9/RPostgres/R/dbBind_PqResult.R | 4 RPostgres-1.4.9/RPostgres/R/dbColumnInfo_PqResult.R | 6 RPostgres-1.4.9/RPostgres/R/dbConnect_PqDriver.R | 60 +- RPostgres-1.4.9/RPostgres/R/dbConnect_RedshiftDriver.R | 17 RPostgres-1.4.9/RPostgres/R/dbDataType_PqConnection.R | 4 RPostgres-1.4.9/RPostgres/R/dbDataType_PqDriver.R | 4 RPostgres-1.4.9/RPostgres/R/dbExistsTable_PqConnection_Id.R | 6 RPostgres-1.4.9/RPostgres/R/dbExistsTable_PqConnection_character.R | 6 RPostgres-1.4.9/RPostgres/R/dbFetch_PqResult.R | 16 RPostgres-1.4.9/RPostgres/R/dbListFields_PqConnection_character.R | 6 RPostgres-1.4.9/RPostgres/R/dbListObjects_PqConnection_ANY.R | 24 RPostgres-1.4.9/RPostgres/R/dbQuoteIdentifier_PqConnection_Id.R | 6 RPostgres-1.4.9/RPostgres/R/dbQuoteIdentifier_PqConnection_SQL.R | 6 RPostgres-1.4.9/RPostgres/R/dbQuoteIdentifier_PqConnection_character.R | 6 RPostgres-1.4.9/RPostgres/R/dbQuoteLiteral_PqConnection.R | 15 RPostgres-1.4.9/RPostgres/R/dbQuoteString_PqConnection_SQL.R | 6 RPostgres-1.4.9/RPostgres/R/dbQuoteString_PqConnection_character.R | 10 RPostgres-1.4.9/RPostgres/R/dbReadTable_PqConnection_character.R | 23 RPostgres-1.4.9/RPostgres/R/dbRemoveTable_PqConnection_character.R | 18 RPostgres-1.4.9/RPostgres/R/dbSendQuery_PqConnection.R | 11 RPostgres-1.4.9/RPostgres/R/dbUnquoteIdentifier_PqConnection_SQL.R | 17 RPostgres-1.4.9/RPostgres/R/dbWriteTable_PqConnection_character_data.frame.R | 59 +- RPostgres-1.4.9/RPostgres/R/default.R | 6 RPostgres-1.4.9/RPostgres/R/sqlData_PqConnection.R | 4 RPostgres-1.4.9/RPostgres/R/tables.R | 56 +- RPostgres-1.4.9/RPostgres/R/utils.R | 8 RPostgres-1.4.9/RPostgres/build/vignette.rds |binary RPostgres-1.4.9/RPostgres/configure | 7 RPostgres-1.4.9/RPostgres/inst/doc/work-queue.Rmd | 2 RPostgres-1.4.9/RPostgres/inst/doc/work-queue.html | 2 RPostgres-1.4.9/RPostgres/man/postgresExportLargeObject.Rd |only RPostgres-1.4.9/RPostgres/man/postgresImportLargeObject.Rd | 3 RPostgres-1.4.9/RPostgres/src/DbColumn.cpp | 44 + RPostgres-1.4.9/RPostgres/src/DbColumn.h | 10 RPostgres-1.4.9/RPostgres/src/DbColumnDataSource.cpp | 8 RPostgres-1.4.9/RPostgres/src/DbColumnDataSource.h | 2 RPostgres-1.4.9/RPostgres/src/DbColumnDataSourceFactory.cpp | 6 RPostgres-1.4.9/RPostgres/src/DbColumnDataSourceFactory.h | 2 RPostgres-1.4.9/RPostgres/src/DbColumnDataType.h | 2 RPostgres-1.4.9/RPostgres/src/DbColumnStorage.cpp | 88 +-- RPostgres-1.4.9/RPostgres/src/DbColumnStorage.h | 12 RPostgres-1.4.9/RPostgres/src/DbConnection.cpp | 114 ++-- RPostgres-1.4.9/RPostgres/src/DbConnection.h | 11 RPostgres-1.4.9/RPostgres/src/DbDataFrame.cpp | 51 + RPostgres-1.4.9/RPostgres/src/DbDataFrame.h | 13 RPostgres-1.4.9/RPostgres/src/DbResult.cpp | 19 RPostgres-1.4.9/RPostgres/src/DbResult.h | 3 RPostgres-1.4.9/RPostgres/src/Makevars.in | 7 RPostgres-1.4.9/RPostgres/src/PqColumnDataSource.cpp | 58 -- RPostgres-1.4.9/RPostgres/src/PqColumnDataSource.h | 8 RPostgres-1.4.9/RPostgres/src/PqColumnDataSourceFactory.cpp | 13 RPostgres-1.4.9/RPostgres/src/PqColumnDataSourceFactory.h | 7 RPostgres-1.4.9/RPostgres/src/PqDataFrame.cpp | 23 RPostgres-1.4.9/RPostgres/src/PqDataFrame.h | 12 RPostgres-1.4.9/RPostgres/src/PqResult.cpp | 19 RPostgres-1.4.9/RPostgres/src/PqResult.h | 14 RPostgres-1.4.9/RPostgres/src/PqResultImpl.cpp | 271 ++++------ RPostgres-1.4.9/RPostgres/src/PqResultImpl.h | 15 RPostgres-1.4.9/RPostgres/src/PqResultSource.cpp | 6 RPostgres-1.4.9/RPostgres/src/PqResultSource.h | 2 RPostgres-1.4.9/RPostgres/src/PqUtils.cpp | 9 RPostgres-1.4.9/RPostgres/src/RPostgres-init.c | 4 RPostgres-1.4.9/RPostgres/src/RPostgres_types.h | 16 RPostgres-1.4.9/RPostgres/src/connection.cpp | 36 - RPostgres-1.4.9/RPostgres/src/cpp11.cpp | 18 RPostgres-1.4.9/RPostgres/src/encode.cpp | 28 - RPostgres-1.4.9/RPostgres/src/encode.h | 10 RPostgres-1.4.9/RPostgres/src/encrypt.cpp | 3 RPostgres-1.4.9/RPostgres/src/integer64.h | 2 RPostgres-1.4.9/RPostgres/src/pch.h | 3 RPostgres-1.4.9/RPostgres/src/result.cpp | 7 RPostgres-1.4.9/RPostgres/src/vendor/boost/config/compiler/diab.hpp | 1 RPostgres-1.4.9/RPostgres/tests/testthat/helper-DBItest.R | 78 +- RPostgres-1.4.9/RPostgres/tests/testthat/helper-astyle.R | 21 RPostgres-1.4.9/RPostgres/tests/testthat/test-DBItest.R | 5 RPostgres-1.4.9/RPostgres/tests/testthat/test-ImportLargeObject.R | 115 +++- RPostgres-1.4.9/RPostgres/tests/testthat/test-Redshift.R | 4 RPostgres-1.4.9/RPostgres/tests/testthat/test-bigint.R | 15 RPostgres-1.4.9/RPostgres/tests/testthat/test-checkInterrupts.R | 12 RPostgres-1.4.9/RPostgres/tests/testthat/test-dbConnect.R | 19 RPostgres-1.4.9/RPostgres/tests/testthat/test-dbGetQuery.R | 32 - RPostgres-1.4.9/RPostgres/tests/testthat/test-dbQuoteIdentifier.R | 73 +- RPostgres-1.4.9/RPostgres/tests/testthat/test-dbWriteTable.R | 111 +++- RPostgres-1.4.9/RPostgres/tests/testthat/test-timezone.R | 13 RPostgres-1.4.9/RPostgres/tools/winlibs.R | 8 RPostgres-1.4.9/RPostgres/vignettes/work-queue.Rmd | 2 95 files changed, 1469 insertions(+), 813 deletions(-)
Title: Database Interface and MariaDB Driver
Description: Implements a DBI-compliant interface to MariaDB
(<https://mariadb.org/>) and MySQL (<https://www.mysql.com/>)
databases.
Author: Kirill Mueller [aut, cre] ,
Jeroen Ooms [aut] ,
David James [aut],
Saikat DebRoy [aut],
Hadley Wickham [aut],
Jeffrey Horner [aut],
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RMariaDB versions 1.3.4 dated 2025-02-24 and 1.3.5 dated 2026-02-06
DESCRIPTION | 15 +-- MD5 | 60 ++++++------ NEWS.md | 15 ++- R/cpp11.R | 4 configure | 7 - src/CMakeLists.txt | 2 src/DbConnection.cpp | 217 +++++++++++++++++++++++++++++----------------- src/DbConnection.h | 27 +++-- src/DbResult.cpp | 22 ++-- src/DbResult.h | 3 src/Makevars.in | 7 + src/MariaBinding.cpp | 59 +++--------- src/MariaBinding.h | 1 src/MariaResult.cpp | 21 ++-- src/MariaResult.h | 17 ++- src/MariaResultImpl.cpp | 6 - src/MariaResultImpl.h | 2 src/MariaResultPrep.cpp | 108 +++++++++++----------- src/MariaResultSimple.cpp | 36 ++++--- src/MariaRow.cpp | 111 +++++++++-------------- src/MariaTypes.cpp | 36 +++++-- src/MariaTypes.h | 11 +- src/MariaUtils.cpp | 30 +++--- src/MariaUtils.h | 8 + src/RMariaDB_types.h | 16 ++- src/connection.cpp | 24 ++++- src/cpp11.cpp | 9 - src/driver.cpp | 15 --- src/integer64.h | 2 src/pch.h | 2 src/result.cpp | 12 +- 31 files changed, 490 insertions(+), 415 deletions(-)
Title: Tools for the 'Parallel' Package
Description: Miscellaneous utilities for parallelizing large
computations. Alternative to MapReduce.
File splitting and distributed operations such as sort and aggregate.
"Software Alchemy" method for parallelizing most statistical methods,
presented in N. Matloff, Parallel Computation for Data Science,
Chapman and Hall, 2015. Includes a debugging aid.
Author: Norm Matloff [cre, aut],
Clark Fitzgerald [aut],
Reed Davis [aut],
Robin Yancey [aut],
Shunxu Huang [aut],
Alex Rumbaugh [aut],
Hadley Wickham [aut]
Maintainer: Norm Matloff <normmatloff@gmail.com>
Diff between partools versions 1.1.6 dated 2017-04-10 and 1.1.7 dated 2026-02-06
partools-1.1.6/partools/inst/CITATION |only partools-1.1.7/partools/DESCRIPTION | 45 +++++++++++++++++++++---- partools-1.1.7/partools/MD5 | 46 +++++++++++++++++++++----- partools-1.1.7/partools/README.md | 2 - partools-1.1.7/partools/build/vignette.rds |binary partools-1.1.7/partools/inst/doc/partools.pdf |binary partools-1.1.7/partools/man/newadult.Rd | 2 - partools-1.1.7/partools/man/prgeng.Rd | 10 ++--- partools-1.1.7/partools/man/snowdoop.Rd | 5 ++ partools-1.1.7/partools/vignettes/DESCRIPTION |only partools-1.1.7/partools/vignettes/MD5 |only partools-1.1.7/partools/vignettes/NAMESPACE |only partools-1.1.7/partools/vignettes/R |only partools-1.1.7/partools/vignettes/README.md |only partools-1.1.7/partools/vignettes/build |only partools-1.1.7/partools/vignettes/data |only partools-1.1.7/partools/vignettes/inst |only partools-1.1.7/partools/vignettes/man |only partools-1.1.7/partools/vignettes/tests |only 19 files changed, 85 insertions(+), 25 deletions(-)
Title: Multi-Level Vector Autoregression
Description: Estimates the multi-level vector autoregression model on time-series data.
Three network structures are obtained: temporal networks, contemporaneous
networks and between-subjects networks.
Author: Sacha Epskamp [aut, cre],
Marie K. Deserno [aut],
Laura F. Bringmann [aut],
Myrthe Veenman [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between mlVAR versions 0.5.2 dated 2024-02-01 and 0.5.5 dated 2026-02-06
DESCRIPTION | 14 +++++----- MD5 | 30 +++++++++++----------- NAMESPACE | 5 --- NEWS | 17 ++++++++++++ R/NodeWise.R | 10 +++---- R/S3Methods0.R | 4 +- R/effects.R | 22 ++++------------ R/lmer_murmur.R | 23 +++++++++++++--- R/mlVAR.R | 75 ++++++++++++++++++++++++++++++++++++++++++++++++------- R/mlVAR0.R | 70 +++++++++++++++++++++++++++------------------------ R/mlVARcompare.R | 2 - R/mlVARmodel.R | 14 ++++++---- R/movingWindow.R | 21 ++++++--------- R/parSim.R | 8 ++--- man/mlVAR.Rd | 9 +++++- man/mlVARsim.Rd | 9 +++++- 16 files changed, 214 insertions(+), 119 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates graphics with
details from statistical tests included in the plots themselves. It
provides an easier syntax to generate information-rich plots for
statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports the most common types of
statistical approaches and tests: parametric, nonparametric, robust,
and Bayesian versions of t-test/ANOVA, correlation analyses,
contingency table analysis, meta-analysis, and regression analyses.
References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.13.4 dated 2025-12-09 and 0.13.5 dated 2026-02-06
DESCRIPTION | 18 +++++++------- MD5 | 20 ++++++++-------- NEWS.md | 6 ++++ R/extract-stats.R | 2 - R/ggbetweenstats-helpers.R | 12 +++++---- R/ggpiestats-ggbarstats-helpers.R | 12 +++++---- README.md | 40 ++++++++++++++++---------------- inst/doc/ggstatsplot.Rmd | 4 --- inst/doc/ggstatsplot.html | 4 --- tests/testthat/test-extract-stats.R | 44 ++++++++++++++++++++++++++++++++++++ vignettes/ggstatsplot.Rmd | 4 --- 11 files changed, 107 insertions(+), 59 deletions(-)
Title: Genetic Analysis Package
Description: As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18.
<doi:10.18637/jss.v023.i08>], it is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it contains functions for
sample size calculations of both population-based and family-based designs, probability
of familial disease aggregation, kinship calculation, statistics in linkage analysis,
and association analysis involving genetic markers including haplotype analysis with or
without environmental covariates. Over years, the package has been developed in-between
many projects hence also in line with the name (gap).
Author: Jing Hua Zhao [aut, cre] ,
Kurt Hornik [ctb],
Brian Ripley [ctb],
Uwe Ligges [ctb],
Achim Zeileis [ctb]
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between gap versions 1.6 dated 2024-08-27 and 1.9 dated 2026-02-06
gap-1.6/gap/inst/doc/jss.Rnw |only gap-1.6/gap/inst/doc/jss.pdf |only gap-1.6/gap/vignettes/figure1.jpg |only gap-1.6/gap/vignettes/jss.Rnw |only gap-1.6/gap/vignettes/jss.bib |only gap-1.6/gap/vignettes/jsslogo.jpg |only gap-1.9/gap/ChangeLog | 14 ++++++ gap-1.9/gap/DESCRIPTION | 19 ++++---- gap-1.9/gap/MD5 | 44 ++++++++----------- gap-1.9/gap/R/h2.jags.R | 4 + gap-1.9/gap/R/kin.morgan.R | 2 gap-1.9/gap/R/qtl2dplotly.R | 6 +- gap-1.9/gap/R/qtl3dplotly.R | 6 +- gap-1.9/gap/build/partial.rdb |binary gap-1.9/gap/build/vignette.rds |binary gap-1.9/gap/data/hg18.rda |binary gap-1.9/gap/data/hg19.rda |binary gap-1.9/gap/data/hg38.rda |binary gap-1.9/gap/inst/REFERENCES.bib | 27 +++++------- gap-1.9/gap/inst/doc/gap.R | 2 gap-1.9/gap/inst/doc/gap.Rmd | 2 gap-1.9/gap/inst/doc/gap.html | 83 ++++++++++++++++++++----------------- gap-1.9/gap/inst/doc/shinygap.html | 4 - gap-1.9/gap/man/h2.jags.Rd | 4 + gap-1.9/gap/man/kin.morgan.Rd | 2 gap-1.9/gap/vignettes/gap.Rmd | 2 26 files changed, 123 insertions(+), 98 deletions(-)
Title: Occurrence Data Cleaning
Description: Flags and checks occurrence data that are in Darwin Core
format. The package includes generic functions and data as well as
some that are specific to bees. This package is meant to build upon
and be complimentary to other excellent occurrence cleaning packages,
including 'bdc' and 'CoordinateCleaner'. This package uses datasets
from several sources and particularly from the Discover Life Website,
created by Ascher and Pickering (2020). For further information,
please see the original publication and package website. Publication
- Dorey et al. (2023) <doi:10.1101/2023.06.30.547152> and package
website - Dorey et al. (2023) <https://github.com/jbdorey/BeeBDC>.
Author: James B. Dorey [aut, cre, cph] ,
Robert L. O'Reilly [aut] ,
Silas Bossert [aut] ,
Erica E. Fischer [aut]
Maintainer: James B. Dorey <jbdorey@me.com>
Diff between BeeBDC versions 1.3.2 dated 2026-01-16 and 1.3.3 dated 2026-02-06
DESCRIPTION | 6 ++-- MD5 | 40 +++++++++++++++---------------- NEWS.md | 6 ++++ R/BeeBDCQuery.R | 2 - R/interactiveMapR.R | 4 +++ R/jbd_coordinates_transposed.R | 4 +-- R/jbd_create_figures.R | 7 ++++- R/jbd_get_world_map.R | 4 --- R/repoMerge.R | 5 +++ R/richnessPrepR.R | 4 ++- R/taxadbToBeeBDC.R | 7 ++++- README.md | 34 +++----------------------- inst/CITATION | 18 +++++++++++-- man/interactiveMapR.Rd | 4 +++ man/jbd_coordinates_transposed.Rd | 4 +-- man/jbd_create_figures.Rd | 7 ++++- man/repoMerge.Rd | 5 +++ man/richnessPrepR.Rd | 4 ++- man/taxadbToBeeBDC.Rd | 7 ++++- tests/testthat/test-jbd_create_figures.R | 1 tests/testthat/test-richnessPrepR.R | 2 - 21 files changed, 103 insertions(+), 72 deletions(-)