Title: Reliability Analysis Methods for Structural Engineering
Description: Calculate the failure probability of civil engineering problems with Level I up to Level III Methods. Have fun and enjoy. References: Spaethe (1991, ISBN:3-211-82348-4) "Die Sicherheit tragender Baukonstruktionen", AU,BECK (2001) "Estimation of small failure probabilities in high dimensions by subset simulation." <doi:10.1016/S0266-8920(01)00019-4>, Breitung (1989) "Asymptotic approximations for probability integrals." <doi:10.1016/0266-8920(89)90024-6>.
Author: Konstantin Nille-Hauf [aut],
Tania Feiri [aut],
Marcus Ricker [aut],
Til Lux [aut, cre]
Maintainer: Til Lux <til.lux@tu-dortmund.de>
Diff between TesiproV versions 0.9.5 dated 2026-03-24 and 0.9.6 dated 2026-04-22
DESCRIPTION | 8 MD5 | 54 - NAMESPACE | 4 NEWS.md | 31 R/MCIS_helpers.R | 1598 +++++++++++++++++++++++++-------- R/MC_IS.R | 42 R/clsModelContainer.R | 552 +++++++++-- R/clsParam.R | 5 R/helper_debugPrint.R | 11 R/parallel_helpers.R |only R/zzz.R | 27 inst/doc/TesiproV-Vignette.R | 34 inst/doc/TesiproV-Vignette.Rmd | 130 ++ inst/doc/TesiproV-Vignette.html | 518 +++++++--- inst/extdata |only man/MC_IS_gsys.Rd |only man/MC_IS_single.Rd | 1 man/MC_IS_system.Rd | 9 man/PARAM_BASEVAR-class.Rd | 1 man/build_gsys.Rd |only man/create_rng_manager.Rd |only man/debug.print.Rd | 1 man/init_rng_master.Rd | 1 man/is_empty.Rd | 2 man/is_missing.Rd | 1 man/make_parallel_cluster.Rd |only man/run_parallel.Rd |only tests/testthat/test_MCIS_system.R | 903 +++++++++++++++--- tests/testthat/test_MC_IS_single.R |only tests/testthat/test_Methods_lnorm_x0.R | 24 tests/testthat/test_parallel.R |only vignettes/TesiproV-Vignette.Rmd | 130 ++ 32 files changed, 3237 insertions(+), 850 deletions(-)
More information about OdysseusCharacterizationModule at CRAN
Permanent link
Title: Creates a Scientific Project Skeleton as an R Package
Description: Provides a template for new research projects structured as an R
package-based research compendium. Everything - data, R scripts, custom
functions and manuscript or reports - is contained within the same package to
facilitate collaboration and promote reproducible research, following the FAIR
principles.
Author: Saskia Otto [aut, cre, cph]
Maintainer: Saskia Otto <saskia.a.otto@gmail.com>
Diff between SCIproj versions 1.0.0 dated 2026-03-18 and 1.0.1 dated 2026-04-22
DESCRIPTION | 8 +- MD5 | 20 +++--- NEWS.md | 37 ++++++++++++ R/create_proj.R | 91 ++++++++++++++++++++++--------- README.md | 32 ++++++++--- inst/WORDLIST | 3 + inst/doc/SCIproj.Rmd | 15 +++-- inst/doc/SCIproj.html | 34 ++++++++++- man/create_proj.Rd | 26 +++++++-- tests/testthat/test-create_proj.R | 109 +++++++++++++++++++++++++++++++++++++- vignettes/SCIproj.Rmd | 15 +++-- 11 files changed, 322 insertions(+), 68 deletions(-)
Title: Native Desktop App Framework for 'R'
Description: Build native Windows desktop applications using 'R' and
'WebView2'. Provides a robust 'R6'-based event loop, asynchronous
background task management via 'mirai' and 'callr', and a native
'Win32' message bridge for seamless 'R'-to-user-interface
communication without listening ports or network overhead. Allows 'R'
developers to create professional, standalone desktop tools with modern
web-based user interfaces while maintaining a pure 'R' backend.
Author: Janakiraman G [aut, cre] ,
Serge Zaitsev [cph] ),
Niels Lohmann [cph] ),
Microsoft Corporation [cph] )
Maintainer: Janakiraman G <janakiraman.bt@gmail.com>
Diff between RDesk versions 1.0.4 dated 2026-03-31 and 1.0.5 dated 2026-04-22
DESCRIPTION | 6 - MD5 | 29 +++-- NEWS.md | 42 +++++++ R/build.R | 189 ++++++++++++++++++++++++++--------- README.md | 10 + build/vignette.rds |binary inst/doc/ai_skill.Rmd |only inst/doc/ai_skill.html |only inst/doc/architecture.html | 2 inst/doc/cookbook.html | 4 inst/doc/getting-started.Rmd | 199 ++++++++++++++++++------------------- inst/doc/getting-started.html | 4 man/build_app.Rd | 18 ++- man/rdesk_copy_r_runtime.Rd |only man/rdesk_detect_r_home.Rd |only man/rdesk_validate_build_inputs.Rd | 3 vignettes/ai_skill.Rmd |only vignettes/getting-started.Rmd | 199 ++++++++++++++++++------------------- 18 files changed, 435 insertions(+), 270 deletions(-)
Title: Geospatial Regression Equation for European Nutrient Losses
(GREEN)
Description: Tools and methods to apply the model Geospatial Regression Equation
for European Nutrient losses (GREEN);
Grizzetti et al. (2005) <doi:10.1016/j.jhydrol.2004.07.036>;
Grizzetti et al. (2008);
Grizzetti et al. (2012) <doi:10.1111/j.1365-2486.2011.02576.x>;
Grizzetti et al. (2021) <doi:10.1016/j.gloenvcha.2021.102281>.
Author: A. Udias [aut],
B. Grizzetti [aut],
O. Vigiak [aut],
J. Gomez [aut],
C. Alfaro [aut, cre],
A. Aloe [aut]
Maintainer: C. Alfaro <c.alfarog@gmail.com>
Diff between GREENeR versions 1.0.1 dated 2026-02-11 and 1.0.2 dated 2026-04-22
DESCRIPTION | 12 +- MD5 | 18 +-- NAMESPACE | 2 NEWS.md | 6 + R/rgreen.R | 53 +++++---- R/rgreen_plots.R | 8 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/GREENeR.R | 280 +++++++++++++++++++++++++------------------------- inst/doc/GREENeR.html | 106 +++++------------- 10 files changed, 229 insertions(+), 256 deletions(-)
Title: Simplified Legend and Guide Alignment for 'ggplot2'
Description: Provides one-liner functions for common legend and guide operations
in 'ggplot2'. Simplifies legend positioning, styling, wrapping, and
collection across multi-panel plots created with 'patchwork' or 'cowplot'.
Author: Gilles Colling [aut, cre]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between ggguides versions 1.1.4 dated 2026-01-09 and 1.1.5 dated 2026-04-22
DESCRIPTION | 6 +- MD5 | 43 +++++++-------- NEWS.md | 21 +++++++ R/legend_style.R | 33 +++++++++++ README.md | 115 +++++++++++++++++++++++++++++++++++++---- inst/doc/getting-started.Rmd | 5 + inst/doc/getting-started.html | 32 +++++------ inst/doc/multiple-legends.R | 28 +++++++++ inst/doc/multiple-legends.Rmd | 48 +++++++++++++++++ inst/doc/multiple-legends.html | 105 +++++++++++++++++++++++++++---------- inst/doc/patchwork.Rmd | 3 + inst/doc/patchwork.html | 24 ++++---- inst/doc/positioning.Rmd | 1 inst/doc/positioning.html | 22 +++---- inst/doc/styling.Rmd | 6 ++ inst/doc/styling.html | 48 ++++++++--------- man/legend_style.Rd | 18 ++++++ tests/testthat/Rplots.pdf |only vignettes/getting-started.Rmd | 5 + vignettes/multiple-legends.Rmd | 48 +++++++++++++++++ vignettes/patchwork.Rmd | 3 + vignettes/positioning.Rmd | 1 vignettes/styling.Rmd | 6 ++ 23 files changed, 493 insertions(+), 128 deletions(-)
Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function
and random generation for a number of univariate
and multivariate distributions. This package implements the
following distributions: Bernoulli, beta-binomial, beta-negative
binomial, beta prime, Bhattacharjee, Birnbaum-Saunders,
bivariate normal, bivariate Poisson, categorical, Dirichlet,
Dirichlet-multinomial, discrete gamma, discrete Laplace,
discrete normal, discrete uniform, discrete Weibull, Frechet,
gamma-Poisson, generalized extreme value, Gompertz,
generalized Pareto, Gumbel, half-Cauchy, half-normal, half-t,
Huber density, inverse chi-squared, inverse-gamma, Kumaraswamy,
Laplace, location-scale t, logarithmic, Lomax, multivariate
hypergeometric, multinomial, negative hypergeometric,
non-standard beta, normal mixture, Poisson mixture, Pareto,
power, reparametrized beta, Rayleigh, shifted Gompertz, Skellam,
slash, triangular, truncated binomial, truncated normal,
truncated Poisson, Tukey lambda, Wald, zero-inflated binomial,
zer [...truncated...]
Author: Tymoteusz Wolodzko [aut],
Sigbert Klinke [cre],
Thomas Farrar [ctb]
Maintainer: Sigbert Klinke <sigbert@wiwi.hu-berlin.de>
Diff between extraDistr versions 1.10.0.2 dated 2026-01-18 and 1.10.0.3 dated 2026-04-22
DESCRIPTION | 18 ++++++++++++------ MD5 | 10 +++++----- NEWS.md | 4 ++++ R/dirichlet-distribution.R | 7 +++---- man/Dirichlet.Rd | 7 +++---- man/extraDistr-package.Rd | 5 +++++ 6 files changed, 32 insertions(+), 19 deletions(-)
Title: Disaster Victim Identification
Description: Joint DNA-based disaster victim identification (DVI), as
described in Vigeland and Egeland (2021)
<doi:10.21203/rs.3.rs-296414/v1>. Identification is performed by
optimising the joint likelihood of all victim samples and reference
individuals. Individual identification probabilities, conditional on
all available information, are derived from the joint solution in the
form of posterior pairing probabilities. 'dvir' is part of the
'pedsuite' collection of packages for pedigree analysis.
Author: Magnus Dehli Vigeland [aut, cre] ,
Thore Egeland [aut]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between dvir versions 3.3.0 dated 2024-09-09 and 3.4.0 dated 2026-04-22
dvir-3.3.0/dvir/data/KETPch4.rda |only dvir-3.3.0/dvir/data/KETPex481.rda |only dvir-3.3.0/dvir/data/KETPex497.rda |only dvir-3.3.0/dvir/data/KETPex498.rda |only dvir-3.3.0/dvir/man/KETPch4.Rd |only dvir-3.3.0/dvir/man/KETPex481.Rd |only dvir-3.3.0/dvir/man/KETPex497.Rd |only dvir-3.3.0/dvir/man/KETPex498.Rd |only dvir-3.4.0/dvir/DESCRIPTION | 19 - dvir-3.4.0/dvir/MD5 | 104 +++---- dvir-3.4.0/dvir/NAMESPACE | 2 dvir-3.4.0/dvir/NEWS.md | 27 + dvir-3.4.0/dvir/R/addVictims.R |only dvir-3.4.0/dvir/R/amDrivenDVI.R | 185 +++++++++--- dvir-3.4.0/dvir/R/data.R | 55 +-- dvir-3.4.0/dvir/R/dviCompare.R | 6 dvir-3.4.0/dvir/R/dviData.R | 149 +++++++--- dvir-3.4.0/dvir/R/dviSim.R | 6 dvir-3.4.0/dvir/R/dviSolve.R | 249 ++++++++++++----- dvir-3.4.0/dvir/R/familias2dvir.R | 20 - dvir-3.4.0/dvir/R/findExcluded.R | 16 - dvir-3.4.0/dvir/R/findNonidentifiable.R | 64 ++-- dvir-3.4.0/dvir/R/findUndisputed.R | 35 +- dvir-3.4.0/dvir/R/formatSummary.R | 34 +- dvir-3.4.0/dvir/R/getDatabase.R |only dvir-3.4.0/dvir/R/jointDVI.R | 62 +++- dvir-3.4.0/dvir/R/pairwiseGLR.R | 4 dvir-3.4.0/dvir/R/pairwiseLR.R | 6 dvir-3.4.0/dvir/R/plotDVI.R | 42 +- dvir-3.4.0/dvir/R/sequentialDVI.R | 4 dvir-3.4.0/dvir/R/subsetDVI.R | 56 ++- dvir-3.4.0/dvir/R/utils.R | 29 + dvir-3.4.0/dvir/README.md | 132 ++++----- dvir-3.4.0/dvir/build/partial.rdb |binary dvir-3.4.0/dvir/data/KETPchap481.rda |only dvir-3.4.0/dvir/data/KETPchap484.rda |only dvir-3.4.0/dvir/data/KETPexer497.rda |only dvir-3.4.0/dvir/data/KETPexer498.rda |only dvir-3.4.0/dvir/man/KETPchap481.Rd |only dvir-3.4.0/dvir/man/KETPchap484.Rd |only dvir-3.4.0/dvir/man/KETPexer497.Rd |only dvir-3.4.0/dvir/man/KETPexer498.Rd |only dvir-3.4.0/dvir/man/addVictims.Rd |only dvir-3.4.0/dvir/man/amDrivenDVI.Rd | 2 dvir-3.4.0/dvir/man/dviSolve.Rd | 48 ++- dvir-3.4.0/dvir/man/example1.Rd | 1 dvir-3.4.0/dvir/man/example2.Rd | 3 dvir-3.4.0/dvir/man/familias2dvir.Rd | 2 dvir-3.4.0/dvir/man/figures/README-example-plot1-1.png |binary dvir-3.4.0/dvir/man/figures/README-example-plot2-1.png |binary dvir-3.4.0/dvir/man/figures/README-solution-1.png |binary dvir-3.4.0/dvir/man/findNonidentifiable.Rd | 13 dvir-3.4.0/dvir/man/findUndisputed.Rd | 3 dvir-3.4.0/dvir/man/fire.Rd | 4 dvir-3.4.0/dvir/man/getDatabase.Rd |only dvir-3.4.0/dvir/man/getFamily.Rd | 5 dvir-3.4.0/dvir/man/grave.Rd | 5 dvir-3.4.0/dvir/man/icmp.Rd | 7 dvir-3.4.0/dvir/man/jointDVI.Rd | 23 + dvir-3.4.0/dvir/man/pairwiseLR.Rd | 2 dvir-3.4.0/dvir/man/planecrash.Rd | 7 dvir-3.4.0/dvir/man/plotDVI.Rd | 7 dvir-3.4.0/dvir/man/subsetDVI.Rd | 24 + 63 files changed, 969 insertions(+), 493 deletions(-)
Title: Create Spreadsheet Publications Following Best Practice
Description: Generate spreadsheet publications that follow best practice
guidance from the UK government's Analysis Function, available at
<https://analysisfunction.civilservice.gov.uk/policy-store/releasing-statistics-in-spreadsheets/>,
with a focus on accessibility. See also the 'Python' package 'gptables'.
Author: Matt Dray [aut],
Tim Taylor [ctb],
Matt Kerlogue [ctb],
Crown Copyright [cph],
Olivia Box Power [cre, ctb],
Zachary Gleisner [ctb]
Maintainer: Olivia Box Power <Olivia.BoxPower@dhsc.gov.uk>
Diff between aftables versions 2.0.0 dated 2026-03-20 and 2.0.1 dated 2026-04-22
DESCRIPTION | 6 MD5 | 10 - NAMESPACE | 1 NEWS.md | 414 ++++++++++++++++++++++++------------------------- R/aftables-package.R | 1 inst/doc/aftables.html | 40 ++-- 6 files changed, 239 insertions(+), 233 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-17 2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-28 1.1-6
2021-11-25 1.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-13 1.1.0
2015-12-10 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-31 2.2
2012-05-22 2.1
2012-04-25 2.0
2012-03-27 1.2
2011-05-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-16 4.3-3
2015-02-04 4.3-1
2014-01-11 4.2-7
2012-02-15 4.1-0
2010-10-16 4.0-4
2010-06-27 4.0-3
2010-05-25 4.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-08-20 0.1-7
2021-04-11 0.1-6
2017-08-17 0.1-5
2017-06-25 0.1-4
2015-07-08 0.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-22 5.0.0
2020-08-17 4.0.0
2018-07-16 3.0.0
2017-11-15 2.0.3
2016-07-22 2.0.2
2016-05-20 2.0.1
2015-12-03 2.0.0
2014-11-30 1.1.0
2014-11-11 1.0.0
2014-03-24 0.3.3
2014-02-18 0.3.2
2013-04-23 0.3.1
2012-01-18 0.3
2012-01-02 0.2
2011-12-30 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-02 1.1
2015-01-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-11 1.0-4
2013-09-23 1.0-3
2011-10-17 1.0-1
2011-02-17 1.0-0
2009-10-26 0.5-1
2008-06-26 0.4-4
2006-10-20 0.4-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-23 0.2
2013-08-13 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-31 0.4-02
2014-08-22 0.4-01
2014-07-14 0.3-06
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-28 0.5.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-09-08 0.3.2
2019-05-11 0.3.1
2018-06-01 0.3
2017-10-14 0.2
2017-04-23 0.1
Title: Soil Health Assessment Models for Assessing Soil Conditions and
Suitability
Description: Soil health assessment builds information to improve decision in
soil management. It facilitates assessment of soil conditions for crop suitability [such as those given by FAO
<https://www.fao.org/land-water/databases-and-software/crop-information/en/>],
groundwater recharge, fertility, erosion, salinization [<doi:10.1002/ldr.4211>],
carbon sequestration, irrigation potential, and status of soil resources.
Author: Christian Thine Omuto [aut, cre]
Maintainer: Christian Thine Omuto <thineomuto@yahoo.com>
Diff between soilassessment versions 0.3.2 dated 2026-04-13 and 1.3.0 dated 2026-04-22
DESCRIPTION | 6 +- MD5 | 76 ++++++++++++++------------ NAMESPACE | 2 R/CECSuit.R | 121 +++++------------------------------------- R/ECSuit.R | 124 ++++++------------------------------------- R/ECharm_Info.R | 2 R/ESPSuit.R | 126 +++++++------------------------------------- R/PHSuit.R | 122 ++++++------------------------------------- R/PHharm_Info.R | 2 R/SOCSuit.R | 123 ++++++------------------------------------- R/appendTextureclass.R | 101 ++++++++++++----------------------- R/bulkdenSuit.R | 125 +++++--------------------------------------- R/calcSuit.R |only R/carbonateSuit.R | 127 +++++++------------------------------------- R/demSuit.R | 129 +++++++-------------------------------------- R/depthSuit.R | 123 ++++++------------------------------------- R/erosionSuit.R | 116 ++++------------------------------------- R/fertilitySuit.R | 119 ++++-------------------------------------- R/getSuit.R |only R/physicalSuit.R | 130 +++++++--------------------------------------- R/porositySuit.R | 121 ++++-------------------------------------- R/slopeSuit.R | 129 +++++++-------------------------------------- R/stoneSuit.R | 123 ++++++------------------------------------- R/surveyPoints.R | 31 +++------- man/ECSuit.Rd | 12 ---- man/ECharm_Info.Rd | 22 +++++++ man/PHharm_Info.Rd | 22 +++++++ man/SOCSuit.Rd | 8 +- man/appendTextureclass.Rd | 4 - man/calcSuit.Rd |only man/carbonateSuit.Rd | 6 -- man/depthSuit.Rd | 10 --- man/fertilitySuit.Rd | 5 + man/getSuit.Rd |only man/reclassifyMap.Rd | 10 +-- man/slopeSuit.Rd | 12 ++-- man/sloplenFUN.Rd | 2 man/stoneSuit.Rd | 2 man/suitability.Rd | 2 man/surveyPoints.Rd | 8 +- man/tempSuit.Rd | 2 41 files changed, 427 insertions(+), 1778 deletions(-)
More information about soilassessment at CRAN
Permanent link
Title: Execute and Control System Processes
Description: Tools to run system processes in the background. It can
check if a background process is running; wait on a background process
to finish; get the exit status of finished processes; kill background
processes. It can read the standard output and error of the processes,
using non-blocking connections. 'processx' can poll a process for
standard output or error, with a timeout. It can also poll several
processes at once.
Author: Gabor Csardi [aut, cre, cph] ,
Winston Chang [aut],
Posit Software, PBC [cph, fnd] ,
Ascent Digital Services [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between processx versions 3.8.7 dated 2026-04-01 and 3.9.0 dated 2026-04-22
DESCRIPTION | 10 MD5 | 138 ++++----- NAMESPACE | 5 NEWS.md | 57 +++ R/assertions.R | 13 R/connections.R | 48 +++ R/initialize.R | 58 +++- R/io.R | 49 +++ R/on-load.R | 10 R/pipeline.R |only R/print.R | 12 R/process.R | 189 ++++++++++--- R/run.R | 244 +++++++++++++--- R/standalone-errors.R | 54 ++- R/utils.R | 34 ++ README.md | 11 man/pipeline.Rd |only man/poll.Rd | 2 man/process.Rd | 175 ++++++++++-- man/process_initialize.Rd | 3 man/processx-package.Rd | 2 man/processx_connections.Rd | 30 +- man/run.Rd | 31 +- src/create-time.c | 51 +++ src/init.c | 76 +++++ src/processx-connection.c | 143 ++++++++- src/processx-connection.h | 6 src/processx.h | 7 src/tools/px.c | 56 +++ src/unix/processx-unix.h | 2 src/unix/processx.c | 76 ++++- src/unix/utils.c | 17 + src/win/named_pipe.c | 3 src/win/processx-win.h | 6 src/win/processx.c | 376 +++++++++++++++++++++++++- src/win/stdio.c | 39 ++ src/win/utils.c | 18 + tests/testthat/_snaps/Darwin/process.md | 12 tests/testthat/_snaps/Darwin/run.md | 6 tests/testthat/_snaps/Darwin/unix-sockets.md | 22 - tests/testthat/_snaps/Linux/process.md | 12 tests/testthat/_snaps/Linux/run.md | 6 tests/testthat/_snaps/Linux/unix-sockets.md | 22 - tests/testthat/_snaps/Windows/process.md | 12 tests/testthat/_snaps/Windows/run.md | 6 tests/testthat/_snaps/Windows/unix-sockets.md | 6 tests/testthat/_snaps/err-output.md | 26 - tests/testthat/_snaps/errors.md | 6 tests/testthat/_snaps/fifo.md | 4 tests/testthat/_snaps/io.md | 22 - tests/testthat/_snaps/newcli/err-output.md | 8 tests/testthat/_snaps/process.md | 2 tests/testthat/_snaps/pty.md | 2 tests/testthat/_snaps/run.md |only tests/testthat/_snaps/standalone-errors.md | 8 tests/testthat/_snaps/unix-sockets.md | 24 - tests/testthat/_snaps/utils.md | 6 tests/testthat/helper.R | 29 ++ tests/testthat/test-env.R | 8 tests/testthat/test-fifo.R | 1 tests/testthat/test-io.R | 62 ++++ tests/testthat/test-kill-tree.R | 24 - tests/testthat/test-pipeline.R |only tests/testthat/test-poll-curl.R | 4 tests/testthat/test-print.R | 19 + tests/testthat/test-process.R | 140 +++++++++ tests/testthat/test-pty.R | 72 ++++ tests/testthat/test-run.R | 164 +++++++++++ tests/testthat/test-standalone-errors.R | 4 tests/testthat/test-unix-sockets.R | 34 +- tests/testthat/test-utils.R | 18 + tools/valgrind.supp | 20 - 72 files changed, 2446 insertions(+), 416 deletions(-)
Title: Explore the R Package Dependencies on the Comprehensive R
Archive Network (CRAN) Like Repositories
Description: Explore various dependencies of a packages (on the Comprehensive R Archive Network Like repositories). The functions get_neighborhood() and get_dependencies() provide dependencies of packages and as_graph() can be used to convert into a 'igraph' object for further analysis and plotting.
Author: Komala Sheshachala Srikanth [aut, cre],
Singh Nikhil [aut]
Maintainer: Komala Sheshachala Srikanth <sri.teach@gmail.com>
Diff between pkggraph versions 0.3.0 dated 2026-02-23 and 0.3.1 dated 2026-04-22
DESCRIPTION | 6 ++-- MD5 | 20 +++++++-------- NAMESPACE | 2 - NEWS.md | 4 +++ R/core.R | 5 ++- R/init.R | 41 ++++++++++++++++++------------- R/pkggraph-package.R | 2 - README.md | 14 +++++----- man/figures/README-unnamed-chunk-2-1.png |binary man/init.Rd | 10 +++---- man/pkggraph-package.Rd | 2 - 11 files changed, 57 insertions(+), 49 deletions(-)
Title: An Object Oriented System Meant to Become a Successor to S3 and
S4
Description: A new object oriented programming system designed to be a
successor to S3 and S4. It includes formal class, generic, and method
specification, and a limited form of multiple dispatch. It has been
designed and implemented collaboratively by the R Consortium
Object-Oriented Programming Working Group, which includes
representatives from R-Core, 'Bioconductor', 'Posit'/'tidyverse', and
the wider R community.
Author: Object-Oriented Programming Working Group [cph],
Davis Vaughan [aut],
Jim Hester [aut] ,
Tomasz Kalinowski [aut],
Will Landau [aut],
Michael Lawrence [aut],
Martin Maechler [aut] ,
Luke Tierney [aut],
Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between S7 versions 0.2.1-1 dated 2026-04-15 and 0.2.2 dated 2026-04-22
DESCRIPTION | 6 +- MD5 |only NEWS.md | 4 + build/vignette.rds |binary inst/doc/S7.html | 7 +-- inst/doc/classes-objects.html | 5 +- inst/doc/compatibility.html | 5 +- inst/doc/generics-methods.html | 5 +- inst/doc/motivation.html | 5 +- inst/doc/packages.html | 5 +- inst/doc/performance.html | 95 ++++++++++++++++++++--------------------- src/compat.h |only src/init.c | 6 -- src/method-dispatch.c | 10 +--- src/prop.c | 23 ++++++--- 15 files changed, 93 insertions(+), 83 deletions(-)
Title: Interactive 3D Brain Atlas Visualization
Description: Plot brain atlases as interactive 3D meshes using 'Three.js'
via 'htmlwidgets', or render publication-quality static images through
'rgl' and 'rayshader'. A pipe-friendly API lets you map data onto
brain regions, control camera angles, toggle region edges, overlay
glass brains, and snapshot or ray-trace the result. Additional
atlases are available through the 'ggsegverse' r-universe. Mowinckel
& Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.
Author: Athanasia Mo Mowinckel [aut, cre] ,
Didac Vidal-Pineiro [aut] ,
Center for Lifespan Changes in Brain and Cognition , University
of Oslo [cph],
three.js authors [ctb, cph]
Maintainer: Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>
Diff between ggseg3d versions 2.1.0 dated 2026-04-09 and 2.1.1 dated 2026-04-22
ggseg3d-2.1.0/ggseg3d/man/position_hemisphere.Rd |only ggseg3d-2.1.1/ggseg3d/DESCRIPTION | 18 +- ggseg3d-2.1.1/ggseg3d/LICENSE.note |only ggseg3d-2.1.1/ggseg3d/MD5 | 61 ++++----- ggseg3d-2.1.1/ggseg3d/NEWS.md | 35 +++++ ggseg3d-2.1.1/ggseg3d/R/additions.R | 98 ++++++++------- ggseg3d-2.1.1/ggseg3d/R/brain-mesh.R | 110 ++++++----------- ggseg3d-2.1.1/ggseg3d/R/ggseg3d.R | 26 ---- ggseg3d-2.1.1/ggseg3d/R/rayshader.R | 3 ggseg3d-2.1.1/ggseg3d/R/widget-output.R | 6 ggseg3d-2.1.1/ggseg3d/inst/WORDLIST | 9 + ggseg3d-2.1.1/ggseg3d/man/add_glassbrain.Rd | 12 + ggseg3d-2.1.1/ggseg3d/man/build_centerline_data.Rd | 4 ggseg3d-2.1.1/ggseg3d/man/ggseg3d-package.Rd | 1 ggseg3d-2.1.1/ggseg3d/man/ggseg3d-shiny.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/ggseg3d.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/ggsegray.Rd | 1 ggseg3d-2.1.1/ggseg3d/man/pan_camera.Rd | 4 ggseg3d-2.1.1/ggseg3d/man/resolve_brain_mesh.Rd | 11 - ggseg3d-2.1.1/ggseg3d/man/set_background.Rd | 4 ggseg3d-2.1.1/ggseg3d/man/set_dimensions.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/set_edges.Rd | 4 ggseg3d-2.1.1/ggseg3d/man/set_flat_shading.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/set_legend.Rd | 3 ggseg3d-2.1.1/ggseg3d/man/set_orthographic.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/set_positioning.Rd | 30 ++-- ggseg3d-2.1.1/ggseg3d/man/updateGgseg3dBackground.Rd | 2 ggseg3d-2.1.1/ggseg3d/man/updateGgseg3dCamera.Rd | 2 ggseg3d-2.1.1/ggseg3d/tests/testthat/_snaps |only ggseg3d-2.1.1/ggseg3d/tests/testthat/helper-visual.R |only ggseg3d-2.1.1/ggseg3d/tests/testthat/test-additions.R | 31 +++- ggseg3d-2.1.1/ggseg3d/tests/testthat/test-brain-mesh.R | 66 +++++----- ggseg3d-2.1.1/ggseg3d/tests/testthat/test-ggseg3d.R | 27 ++++ ggseg3d-2.1.1/ggseg3d/tests/testthat/test-visual.R |only 34 files changed, 328 insertions(+), 250 deletions(-)
Title: Tests for Variance Homogeneity
Description: Performs 18 omnibus tests yielding a total of 28 distinct methodological variations for testing the composite hypothesis of variance homogeneity.
Author: Gozde Cosar [aut],
Muhammed Ali Yilmaz [aut],
Merve Kasikci [aut],
Osman Dag [aut, cre]
Maintainer: Osman Dag <osman.dag@outlook.com>
Diff between vartest versions 1.4 dated 2026-04-07 and 1.5 dated 2026-04-22
vartest-1.4/vartest/R/adjusted.taha.test.R |only vartest-1.4/vartest/R/taha.test.R |only vartest-1.4/vartest/man/adjusted.taha.test.Rd |only vartest-1.4/vartest/man/taha.test.Rd |only vartest-1.5/vartest/DESCRIPTION | 12 +++---- vartest-1.5/vartest/MD5 | 34 +++++++++----------- vartest-1.5/vartest/NAMESPACE | 6 ++- vartest-1.5/vartest/R/select_vartest.R |only vartest-1.5/vartest/man/ansari.test.Rd | 2 - vartest-1.5/vartest/man/capon.test.Rd | 2 - vartest-1.5/vartest/man/david.barton.test.Rd | 6 +-- vartest-1.5/vartest/man/duran.test.Rd | 3 + vartest-1.5/vartest/man/fk.test.Rd | 6 +-- vartest-1.5/vartest/man/klotz.test.Rd | 2 - vartest-1.5/vartest/man/mood.test.Rd | 2 - vartest-1.5/vartest/man/print.summary.vht.Rd | 2 - vartest-1.5/vartest/man/select_vartest.Rd |only vartest-1.5/vartest/man/siegel.tukey.test.Rd | 4 +- vartest-1.5/vartest/man/summary.vht.Rd | 2 - vartest-1.5/vartest/man/talwar.gentle.test.Rd | 2 - vartest-1.5/vartest/tests/testthat/testthat-vht.R | 37 +++++----------------- 21 files changed, 53 insertions(+), 69 deletions(-)
Title: A Wrapper for the 'Highcharts' Library
Description: A wrapper for the 'Highcharts' library including
shortcut functions to plot R objects. 'Highcharts'
<https://www.highcharts.com/> is a charting library offering
numerous chart types with a simple configuration syntax.
Author: Joshua Kunst [aut, cre],
Nuno Agostinho [ctb] ,
Danton Noriega [ctb] ,
Martin John Hadley [ctb] ,
Eduardo Flores [ctb] ,
Dean Kilfoyle [ctb] ,
Adline Dsilva [ctb] ,
Kamil Slowikowski [ctb] ,
Christian Minich [ctb] ,
Jonathan Armond [ctb] ,
David Breu [...truncated...]
Maintainer: Joshua Kunst <jbkunst@gmail.com>
Diff between highcharter versions 0.9.4 dated 2022-01-03 and 0.9.5 dated 2026-04-22
highcharter-0.9.4/highcharter/man/highcharter.Rd |only highcharter-0.9.5/highcharter/DESCRIPTION | 11 highcharter-0.9.5/highcharter/MD5 | 383 - highcharter-0.9.5/highcharter/NAMESPACE | 562 +- highcharter-0.9.5/highcharter/NEWS.md | 576 +- highcharter-0.9.5/highcharter/R/data-helpers.R | 488 +- highcharter-0.9.5/highcharter/R/data.R | 494 +- highcharter-0.9.5/highcharter/R/export_hc.R | 156 highcharter-0.9.5/highcharter/R/globals.R | 26 highcharter-0.9.5/highcharter/R/hchart-shorcuts.R | 952 ++-- highcharter-0.9.5/highcharter/R/hchart.R | 79 highcharter-0.9.5/highcharter/R/helpers.R | 820 +-- highcharter-0.9.5/highcharter/R/highcharter-package.R | 86 highcharter-0.9.5/highcharter/R/highcharter.R | 528 +- highcharter-0.9.5/highcharter/R/highcharts-api-add.R | 1558 +++--- highcharter-0.9.5/highcharter/R/highcharts-api-helpers.R | 1048 ++-- highcharter-0.9.5/highcharter/R/highcharts-api.R | 2260 +++++----- highcharter-0.9.5/highcharter/R/highmaps.R | 448 + highcharter-0.9.5/highcharter/R/icons.R | 78 highcharter-0.9.5/highcharter/R/proxy.R | 646 +- highcharter-0.9.5/highcharter/R/theme-alone.R | 188 highcharter-0.9.5/highcharter/R/theme-bloom.R | 278 - highcharter-0.9.5/highcharter/R/theme-elementary.R | 128 highcharter-0.9.5/highcharter/R/theme-ffx.R | 2 highcharter-0.9.5/highcharter/R/theme-flatdark.R | 130 highcharter-0.9.5/highcharter/R/theme-ggplot2.R | 132 highcharter-0.9.5/highcharter/R/theme-hcrt.R | 224 highcharter-0.9.5/highcharter/R/theme-smpl.R | 2 highcharter-0.9.5/highcharter/R/theme-superheroes.R | 150 highcharter-0.9.5/highcharter/R/theme-tufte.R | 162 highcharter-0.9.5/highcharter/README.md | 104 highcharter-0.9.5/highcharter/inst/WORDLIST | 392 - highcharter-0.9.5/highcharter/inst/htmlwidgets/highchart.yaml | 194 highcharter-0.9.5/highcharter/inst/htmlwidgets/highchartzero.js | 68 highcharter-0.9.5/highcharter/inst/htmlwidgets/highchartzero.yaml | 22 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/css/htmlwdgtgrid.css | 558 +- highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/css/motion.css | 96 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/appear.js | 140 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/delay-animation.js | 270 - highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/reset.js | 24 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/symbols-extra.js | 92 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/text-symbols.js | 80 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/custom/tooltip-delay.js | 94 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/modules/map.js | 304 - highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/plugins/draggable-legend.js | 192 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/plugins/grouped-categories.js | 1252 ++--- highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/plugins/highcharts-regression.js | 1334 ++--- highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/plugins/motion.js | 512 +- highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/highcharts/plugins/multicolor_series.js | 1314 ++--- highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/jquery/jquery.min.js | 4 highcharter-0.9.5/highcharter/inst/htmlwidgets/lib/proj4js/proj4.js | 4 highcharter-0.9.5/highcharter/man/citytemp.Rd | 60 highcharter-0.9.5/highcharter/man/citytemp_long.Rd | 54 highcharter-0.9.5/highcharter/man/color_classes.Rd | 40 highcharter-0.9.5/highcharter/man/color_stops.Rd | 40 highcharter-0.9.5/highcharter/man/colorize.Rd | 44 highcharter-0.9.5/highcharter/man/data_to_boxplot.Rd | 104 highcharter-0.9.5/highcharter/man/data_to_hierarchical.Rd | 88 highcharter-0.9.5/highcharter/man/data_to_sankey.Rd | 54 highcharter-0.9.5/highcharter/man/datetime_to_timestamp.Rd | 50 highcharter-0.9.5/highcharter/man/df_to_annotations_labels.Rd | 48 highcharter-0.9.5/highcharter/man/download_map_data.Rd | 70 highcharter-0.9.5/highcharter/man/export_hc.Rd | 96 highcharter-0.9.5/highcharter/man/favorite_bars.Rd | 54 highcharter-0.9.5/highcharter/man/favorite_pies.Rd | 54 highcharter-0.9.5/highcharter/man/figures/circle.svg | 478 +- highcharter-0.9.5/highcharter/man/figures/hexicon.svg | 502 +- highcharter-0.9.5/highcharter/man/figures/square.svg | 480 +- highcharter-0.9.5/highcharter/man/get_data_from_map.Rd | 48 highcharter-0.9.5/highcharter/man/get_hc_series_from_df.Rd | 46 highcharter-0.9.5/highcharter/man/globaltemp.Rd | 62 highcharter-0.9.5/highcharter/man/hc_add_annotation.Rd | 50 highcharter-0.9.5/highcharter/man/hc_add_dependency.Rd | 68 highcharter-0.9.5/highcharter/man/hc_add_dependency_fa.Rd | 44 highcharter-0.9.5/highcharter/man/hc_add_event_point.Rd | 62 highcharter-0.9.5/highcharter/man/hc_add_series.Rd | 48 highcharter-0.9.5/highcharter/man/hc_add_series.character.Rd | 42 highcharter-0.9.5/highcharter/man/hc_add_series.data.frame.Rd | 50 highcharter-0.9.5/highcharter/man/hc_add_series.density.Rd | 36 highcharter-0.9.5/highcharter/man/hc_add_series.forecast.Rd | 70 highcharter-0.9.5/highcharter/man/hc_add_series.geo_json.Rd | 46 highcharter-0.9.5/highcharter/man/hc_add_series.lm.Rd | 84 highcharter-0.9.5/highcharter/man/hc_add_series.numeric.Rd | 36 highcharter-0.9.5/highcharter/man/hc_add_series.ts.Rd | 36 highcharter-0.9.5/highcharter/man/hc_add_series.xts.Rd | 46 highcharter-0.9.5/highcharter/man/hc_add_series_list.Rd | 52 highcharter-0.9.5/highcharter/man/hc_add_series_map.Rd | 134 highcharter-0.9.5/highcharter/man/hc_add_theme.Rd | 56 highcharter-0.9.5/highcharter/man/hc_add_yAxis.Rd | 164 highcharter-0.9.5/highcharter/man/hc_annotations.Rd | 140 highcharter-0.9.5/highcharter/man/hc_boost.Rd | 256 - highcharter-0.9.5/highcharter/man/hc_caption.Rd | 80 highcharter-0.9.5/highcharter/man/hc_chart.Rd | 92 highcharter-0.9.5/highcharter/man/hc_colorAxis.Rd | 188 highcharter-0.9.5/highcharter/man/hc_colors.Rd | 60 highcharter-0.9.5/highcharter/man/hc_credits.Rd | 56 highcharter-0.9.5/highcharter/man/hc_drilldown.Rd | 168 highcharter-0.9.5/highcharter/man/hc_elementId.Rd | 42 highcharter-0.9.5/highcharter/man/hc_exporting.Rd | 54 highcharter-0.9.5/highcharter/man/hc_labels.Rd | 68 highcharter-0.9.5/highcharter/man/hc_legend.Rd | 80 highcharter-0.9.5/highcharter/man/hc_loading.Rd | 60 highcharter-0.9.5/highcharter/man/hc_mapNavigation.Rd | 50 highcharter-0.9.5/highcharter/man/hc_motion.Rd | 42 highcharter-0.9.5/highcharter/man/hc_navigator.Rd | 76 highcharter-0.9.5/highcharter/man/hc_pane.Rd | 184 highcharter-0.9.5/highcharter/man/hc_plotOptions.Rd | 80 highcharter-0.9.5/highcharter/man/hc_rangeSelector.Rd | 70 highcharter-0.9.5/highcharter/man/hc_responsive.Rd | 82 highcharter-0.9.5/highcharter/man/hc_rm_series.Rd | 32 highcharter-0.9.5/highcharter/man/hc_scrollbar.Rd | 86 highcharter-0.9.5/highcharter/man/hc_series.Rd | 64 highcharter-0.9.5/highcharter/man/hc_size.Rd | 48 highcharter-0.9.5/highcharter/man/hc_subtitle.Rd | 64 highcharter-0.9.5/highcharter/man/hc_theme.Rd | 110 highcharter-0.9.5/highcharter/man/hc_theme_538.Rd | 74 highcharter-0.9.5/highcharter/man/hc_theme_alone.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_bloom.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_chalk.Rd | 44 highcharter-0.9.5/highcharter/man/hc_theme_darkunica.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_db.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_economist.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_elementary.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_ffx.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_flat.Rd | 42 highcharter-0.9.5/highcharter/man/hc_theme_flatdark.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_ft.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_ggplot2.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_google.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_gridlight.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_handdrawn.Rd | 40 highcharter-0.9.5/highcharter/man/hc_theme_hcrt.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_merge.Rd | 64 highcharter-0.9.5/highcharter/man/hc_theme_monokai.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_null.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_sandsignika.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_smpl.Rd | 40 highcharter-0.9.5/highcharter/man/hc_theme_sparkline.Rd | 40 highcharter-0.9.5/highcharter/man/hc_theme_superheroes.Rd | 38 highcharter-0.9.5/highcharter/man/hc_theme_tufte.Rd | 56 highcharter-0.9.5/highcharter/man/hc_title.Rd | 60 highcharter-0.9.5/highcharter/man/hc_tooltip.Rd | 70 highcharter-0.9.5/highcharter/man/hc_xAxis.Rd | 92 highcharter-0.9.5/highcharter/man/hc_yAxis.Rd | 92 highcharter-0.9.5/highcharter/man/hc_zAxis.Rd | 110 highcharter-0.9.5/highcharter/man/hcaes.Rd | 44 highcharter-0.9.5/highcharter/man/hcaes_string.Rd | 52 highcharter-0.9.5/highcharter/man/hcboxplot.Rd | 54 highcharter-0.9.5/highcharter/man/hchart.Rd | 44 highcharter-0.9.5/highcharter/man/hchart.igraph.Rd |only highcharter-0.9.5/highcharter/man/hchart.survfit.Rd | 122 highcharter-0.9.5/highcharter/man/hciconarray.Rd | 48 highcharter-0.9.5/highcharter/man/hcmap.Rd | 122 highcharter-0.9.5/highcharter/man/hcparcords.Rd | 66 highcharter-0.9.5/highcharter/man/hcpxy_add_point.Rd | 78 highcharter-0.9.5/highcharter/man/hcpxy_add_series.Rd | 36 highcharter-0.9.5/highcharter/man/hcpxy_loading.Rd | 34 highcharter-0.9.5/highcharter/man/hcpxy_redraw.Rd | 28 highcharter-0.9.5/highcharter/man/hcpxy_remove_point.Rd | 48 highcharter-0.9.5/highcharter/man/hcpxy_remove_series.Rd | 38 highcharter-0.9.5/highcharter/man/hcpxy_set_data.Rd | 76 highcharter-0.9.5/highcharter/man/hcpxy_update.Rd | 32 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highcharter-0.9.5/highcharter/man/mountains_panorama.Rd | 58 highcharter-0.9.5/highcharter/man/mutate_mapping.Rd | 50 highcharter-0.9.5/highcharter/man/pokemon.Rd | 32 highcharter-0.9.5/highcharter/man/random_id.Rd | 32 highcharter-0.9.5/highcharter/man/renderHighchart.Rd | 48 highcharter-0.9.5/highcharter/man/stars.Rd | 60 highcharter-0.9.5/highcharter/man/str_to_id.Rd | 42 highcharter-0.9.5/highcharter/man/tooltip_chart.Rd | 194 highcharter-0.9.5/highcharter/man/tooltip_table.Rd | 68 highcharter-0.9.5/highcharter/man/unemployment.Rd | 56 highcharter-0.9.5/highcharter/man/uscountygeojson.Rd | 34 highcharter-0.9.5/highcharter/man/usgeojson.Rd | 34 highcharter-0.9.5/highcharter/man/vaccines.Rd | 58 highcharter-0.9.5/highcharter/man/weather.Rd | 56 highcharter-0.9.5/highcharter/man/worldgeojson.Rd | 34 194 files changed, 14895 insertions(+), 14846 deletions(-)
Title: Create Elegant Data Visualisations Using the Grammar of Graphics
Description: A system for 'declaratively' creating graphics, based on "The
Grammar of Graphics". You provide the data, tell 'ggplot2' how to map
variables to aesthetics, what graphical primitives to use, and it
takes care of the details.
Author: Hadley Wickham [aut] ,
Winston Chang [aut] ,
Lionel Henry [aut],
Thomas Lin Pedersen [aut, cre] ,
Kohske Takahashi [aut],
Claus Wilke [aut] ,
Kara Woo [aut] ,
Hiroaki Yutani [aut] ,
Dewey Dunnington [aut] ,
Teun van den Brand [aut] ,
Posit, PBC [cph, [...truncated...]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between ggplot2 versions 4.0.2 dated 2026-02-03 and 4.0.3 dated 2026-04-22
DESCRIPTION | 6 +- MD5 | 40 +++++++-------- NEWS.md | 96 ++++++++++++++++++++----------------- R/facet-.R | 8 +-- R/geom-path.R | 4 - R/guide-.R | 2 R/guide-axis-theta.R | 6 +- R/guide-bins.R | 2 R/position-dodge.R | 4 - R/stat-boxplot.R | 7 +- R/stat-sum.R | 2 R/stat-ydensity.R | 4 - R/utilities.R | 13 ++++- inst/doc/extending-ggplot2.html | 49 +++++++++--------- inst/doc/ggplot2-in-packages.html | 3 - inst/doc/ggplot2-specs.html | 31 ++++++----- inst/doc/ggplot2.html | 19 +++---- inst/doc/profiling.html | 9 +-- man/geom_boxplot.Rd | 4 + tests/testthat/test-geom-boxplot.R | 29 +++++++++++ tests/testthat/test-plot.R | 2 21 files changed, 203 insertions(+), 137 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: Bindings to 'libcurl' <https://curl.se/libcurl/> for performing fully
configurable HTTP/FTP requests where responses can be processed in memory, on
disk, or streaming via the callback or connection interfaces. Some knowledge
of 'libcurl' is recommended; for a more-user-friendly web client see the
'httr2' package which builds on this package with http specific tools and logic.
Author: Jeroen Ooms [aut, cre] ,
Hadley Wickham [ctb],
Posit Software, PBC [cph]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between curl versions 7.0.0 dated 2025-08-19 and 7.1.0 dated 2026-04-22
DESCRIPTION | 6 - MD5 | 36 +++++------ NEWS | 6 + R/nslookup.R | 2 R/onload.R | 40 ++++++++++++ build/vignette.rds |binary inst/doc/intro.R | 2 inst/doc/intro.Rmd | 2 inst/doc/intro.html | 115 +++++++++++++++++++------------------ inst/doc/windows.html | 2 man/handle.Rd | 4 - man/handle_cookies.Rd | 2 man/nslookup.Rd | 2 src/download.c | 2 src/handle.c | 4 - src/ieproxy.c | 6 - tests/testthat/test-certificates.R | 2 tests/testthat/test-multi.R | 8 +- vignettes/intro.Rmd | 2 19 files changed, 147 insertions(+), 96 deletions(-)
Title: Univariate Time Series Forecasting
Description: An engine for univariate time series forecasting using
different regression models in an autoregressive way. The engine
provides an uniform interface for applying the different models.
Furthermore, it is extensible so that users can easily apply their
own regression models to univariate time series forecasting and
benefit from all the features of the engine, such as preprocessings
or estimation of forecast accuracy.
Author: Maria Pilar Frias-Bustamante [aut] ,
Francisco Martinez [aut, cre, cph]
Maintainer: Francisco Martinez <fmartin@ujaen.es>
Diff between utsf versions 1.3.2 dated 2026-04-14 and 1.3.3 dated 2026-04-22
DESCRIPTION | 11 MD5 | 18 - NEWS.md | 8 R/build_models.R | 6 R/main.R | 14 - inst/doc/utsf.R | 45 +--- inst/doc/utsf.Rmd | 84 ++----- inst/doc/utsf.html | 584 +++++++++++++++++++++++----------------------------- man/create_model.Rd | 6 vignettes/utsf.Rmd | 84 ++----- 10 files changed, 373 insertions(+), 487 deletions(-)
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.
Author: Andrew Butler [ctb] ,
Saket Choudhary [ctb] ,
David Collins [ctb] ,
Charlotte Darby [ctb] ,
Jeff Farrell [ctb],
Isabella Grabski [ctb] ,
Christoph Hafemeister [ctb] ,
Yuhan Hao [ctb] ,
Austin Hartman [ctb] ,
Paul Hoffman [ctb] ,
Jaison Jain [ctb] ,
L [...truncated...]
Maintainer: Rahul Satija <seurat@nygenome.org>
Diff between Seurat versions 5.4.0 dated 2025-12-14 and 5.5.0 dated 2026-04-22
DESCRIPTION | 8 MD5 | 74 +- NAMESPACE | 6 NEWS.md | 40 + R/clustering.R | 26 R/convenience.R | 4 R/differential_expression.R | 188 +++-- R/dimensional_reduction.R | 8 R/integration.R | 2 R/integration5.R | 2 R/mixscape.R | 8 R/objects.R | 10 R/preprocessing.R | 129 +++ R/sketching.R | 2 R/utilities.R | 54 + R/visualization.R | 701 ++++++++++++-------- R/zzz.R | 3 README.md | 20 build/Seurat.pdf |binary build/stage23.rdb |binary man/DimHeatmap.Rd | 13 man/ElbowPlot.Rd | 25 man/FeaturePlot.Rd | 3 man/GetTissueCoordinates.Rd | 2 man/HarmonyIntegration.Rd | 2 man/Load10X_Spatial.Rd | 2 man/ScaleData.Rd | 3 man/Seurat-package.Rd | 3 man/SingleSpatialPlot.Rd | 9 man/SpatialPlot.Rd | 6 src/RModularityOptimizer.cpp | 8 tests/testthat/test_differential_expression.R | 800 ++++++++++++----------- tests/testthat/test_integratedata.R | 51 - tests/testthat/test_integration.R | 870 ++++++++++++-------------- tests/testthat/test_integration5.R | 346 +++++----- tests/testthat/test_preprocessing.R | 407 ++++++------ tests/testthat/test_transferdata.R | 159 ++-- tests/testthat/test_visualization.R | 30 38 files changed, 2255 insertions(+), 1769 deletions(-)
Title: Reporting Tables
Description: Reporting tables often have structure that goes beyond simple
rectangular data. The 'rtables' package provides a framework for
declaring complex multi-level tabulations and then applying them to
data. This framework models both tabulation and the resulting tables
as hierarchical, tree-like objects which support sibling sub-tables,
arbitrary splitting or grouping of data in row and column dimensions,
cells containing multiple values, and the concept of contextual
summary computations. A convenient pipe-able interface is provided for
declaring table layouts and the corresponding computations, and then
applying them to data.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Daniel Sabanes Bove [ctb],
Maximilian Mordig [ctb],
Davide Garolini [aut] ,
Emily de la Rua [aut] ,
Abinaya Yogasekaram [ctb] ,
Joe Zhu [aut, cre] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between rtables versions 0.6.15 dated 2025-12-14 and 0.6.16 dated 2026-04-22
DESCRIPTION | 22 MD5 | 153 NAMESPACE | 668 +- NEWS.md | 1212 ++-- R/custom_split_funs.R | 1412 ++-- R/default_split_funs.R | 1414 ++-- R/make_split_fun.R | 961 +-- R/make_subset_expr.R | 629 +- R/tt_paginate.R | 2065 +++---- build/vignette.rds |binary inst/WORDLIST | 89 inst/doc/advanced_usage.R | 342 - inst/doc/advanced_usage.html | 1282 ++-- inst/doc/ard_how_to.R | 230 inst/doc/ard_how_to.html | 1792 +++--- inst/doc/baseline.R | 140 inst/doc/baseline.html | 964 +-- inst/doc/clinical_trials.R | 1424 ++-- inst/doc/clinical_trials.html | 4730 ++++++++-------- inst/doc/col_counts.R | 180 inst/doc/col_counts.html | 1174 ++-- inst/doc/custom_appearance.R | 626 +- inst/doc/custom_appearance.html | 2708 ++++----- inst/doc/example_analysis_coxreg.R | 604 +- inst/doc/example_analysis_coxreg.html | 1740 +++--- inst/doc/exploratory_analysis.R | 240 inst/doc/exploratory_analysis.html | 1578 ++--- inst/doc/format_precedence.R | 406 - inst/doc/format_precedence.html | 1636 ++--- inst/doc/guided_intermediate.R | 32 inst/doc/guided_intermediate.html | 3204 +++++------ inst/doc/guided_intermediate_afun_reqs.R | 408 - inst/doc/guided_intermediate_afun_reqs.html | 4502 +++++++-------- inst/doc/guided_intermediate_split_reqs.R | 372 - inst/doc/guided_intermediate_split_reqs.html | 4626 ++++++++-------- inst/doc/guided_intermediate_translating_shells.R | 976 +-- inst/doc/guided_intermediate_translating_shells.html | 5444 +++++++++---------- inst/doc/introspecting_tables.R | 152 inst/doc/introspecting_tables.html | 1348 ++-- inst/doc/manual_table_construction.R | 48 inst/doc/manual_table_construction.html | 932 +-- inst/doc/pathing.R | 362 - inst/doc/pathing.Rmd | 1034 +-- inst/doc/pathing.html | 2608 ++++----- inst/doc/rtables.R | 312 - inst/doc/rtables.html | 1614 ++--- inst/doc/sorting_pruning.R | 364 - inst/doc/sorting_pruning.html | 2662 ++++----- inst/doc/split_functions.R | 386 - inst/doc/split_functions.html | 1856 +++--- inst/doc/subsetting_tables.R | 226 inst/doc/subsetting_tables.html | 1602 ++--- inst/doc/tabulation_concepts.R | 564 - inst/doc/tabulation_concepts.html | 2344 ++++---- inst/doc/tabulation_dplyr.R | 292 - inst/doc/tabulation_dplyr.html | 1394 ++-- inst/doc/title_footer.R | 282 inst/doc/title_footer.html | 1838 +++--- man/add_combo_facet.Rd | 115 man/add_overall_level.Rd | 270 man/drop_facet_levels.Rd | 59 man/make_split_fun.Rd | 267 man/make_split_result.Rd | 164 man/make_subset_expr.Rd |only man/restrict_facets.Rd |only man/rtables-package.Rd | 80 man/trim_levels_in_facets.Rd | 55 tests/testthat/test-accessors.R | 1260 ++-- tests/testthat/test-custom_split_funs.R | 597 +- tests/testthat/test-exporters.R | 546 - tests/testthat/test-formatting.R | 426 - tests/testthat/test-header-footer.R | 334 - tests/testthat/test-indent-mod.R | 472 - tests/testthat/test-make-afun.R | 956 +-- tests/testthat/test-make-subset_expr.R |only tests/testthat/test-pagination.R | 1192 ++-- tests/testthat/test-regressions.R | 1246 ++-- tests/testthat/test-sort-prune.R | 724 +- vignettes/pathing.Rmd | 1034 +-- 79 files changed, 41226 insertions(+), 40776 deletions(-)
Title: Detection of Chromosomal Aneuploidies in Ancient DNA Studies
Description: An R implementation of ChASM (Chromosomal Aneuploidy Screening Methodology): a statistically rigorous Bayesian approach for screening data sets for autosomal and sex chromosomal aneuploidies. This package takes as input the number of (deduplicated) reads mapping to chromosomes 1-22 and the X and Y chromosomes, and models these using a Dirichlet-multinomial distribution. From this, This package returns posterior probabilities of sex chromosomal karyotypes (XX, XY, XXY, XYY, XXX and X) and full autosomal aneuploidies (trisomy 13, trisomy 18 and trisomy 21). This package also returns two diagnostic statistics: (i) a posterior probability addressing whether contamination between XX and XY may explain the observed sex chromosomal aneuploidy, and (ii) a chi-squared statistic measuring whether the observed read counts are too divergent from the underlying distribution (and may represent abnormal sequencing/quality issues).
Author: Adam B. Rohrlach [aut, cph] ,
Jono Tuke [aut, cre] ,
Wolfgang Haak [aut]
Maintainer: Jono Tuke <simon.tuke@adelaide.edu.au>
Diff between RChASM versions 1.0.0 dated 2026-03-03 and 1.0.1 dated 2026-04-22
DESCRIPTION | 10 +++-- MD5 | 13 ++++--- NEWS.md | 4 ++ inst/doc/example_analysis.R | 10 +---- inst/doc/example_analysis.Rmd | 60 +++++++++++++++++++---------------- inst/doc/example_analysis.html | 69 ++++++++++++++++++++--------------------- inst/extdata/CHASM_input.sh |only vignettes/example_analysis.Rmd | 60 +++++++++++++++++++---------------- 8 files changed, 119 insertions(+), 107 deletions(-)
Title: Efficient Serialization of R Objects
Description: Streamlines and accelerates the process of saving and loading R objects, improving speed and compression compared to other methods. The package provides two compression formats: the 'qs2' format, which uses R serialization via the C API while optimizing compression and disk I/O, and the 'qdata' format, featuring custom serialization for slightly faster performance and better compression. Additionally, the 'qs2' format can be directly converted to the standard 'RDS' format, ensuring long-term compatibility with future versions of R.
Author: Travers Ching [aut, cre, cph],
Yann Collet [ctb, cph] ,
Facebook, Inc. [cph] ,
Reichardt Tino [ctb, cph] ,
Skibinski Przemyslaw [ctb, cph] ,
Mori Yuta [ctb, cph] ,
Francesc Alted [ctb, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between qs2 versions 0.1.7 dated 2026-01-20 and 0.2.0 dated 2026-04-22
qs2-0.1.7/qs2/src/io |only qs2-0.1.7/qs2/src/qd_constants.h |only qs2-0.1.7/qs2/src/qs_unwind_protect.h |only qs2-0.1.7/qs2/src/xxhash |only qs2-0.1.7/qs2/tests/correctness_testing.R |only qs2-0.2.0/qs2/ChangeLog | 19 qs2-0.2.0/qs2/DESCRIPTION | 14 qs2-0.2.0/qs2/MD5 | 147 qs2-0.2.0/qs2/NAMESPACE | 6 qs2-0.2.0/qs2/R/RcppExports.R | 20 qs2-0.2.0/qs2/R/generate_test_data.R |only qs2-0.2.0/qs2/R/qopt.R | 9 qs2-0.2.0/qs2/R/qs_cache.R |only qs2-0.2.0/qs2/R/qs_to_rds.R | 68 qs2-0.2.0/qs2/R/qx_functions.R | 17 qs2-0.2.0/qs2/R/zstd_file_functions.R | 19 qs2-0.2.0/qs2/README.md | 131 qs2-0.2.0/qs2/configure | 60 qs2-0.2.0/qs2/configure.ac | 33 qs2-0.2.0/qs2/inst/doc/vignette.R | 4 qs2-0.2.0/qs2/inst/doc/vignette.html | 241 - qs2-0.2.0/qs2/inst/doc/vignette.rmd | 119 qs2-0.2.0/qs2/inst/include/qdata-cpp |only qs2-0.2.0/qs2/inst/include/qdata_cpp_external.h |only qs2-0.2.0/qs2/inst/include/qs2_external.h | 88 qs2-0.2.0/qs2/man/generate_test_data.Rd |only qs2-0.2.0/qs2/man/qd_deserialize.Rd | 4 qs2-0.2.0/qs2/man/qd_read.Rd | 4 qs2-0.2.0/qs2/man/qd_save.Rd | 2 qs2-0.2.0/qs2/man/qd_serialize.Rd | 2 qs2-0.2.0/qs2/man/qopt.Rd | 9 qs2-0.2.0/qs2/man/qs_cache.Rd |only qs2-0.2.0/qs2/man/qs_deserialize.Rd | 2 qs2-0.2.0/qs2/man/qs_read.Rd | 2 qs2-0.2.0/qs2/man/qs_save.Rd | 2 qs2-0.2.0/qs2/man/qs_serialize.Rd | 2 qs2-0.2.0/qs2/man/rds_to_qs.Rd | 10 qs2-0.2.0/qs2/man/zstd_compress_bound.Rd | 11 qs2-0.2.0/qs2/man/zstd_file_functions.Rd | 6 qs2-0.2.0/qs2/man/zstd_in_out.Rd | 15 qs2-0.2.0/qs2/src/Makevars.in | 4 qs2-0.2.0/qs2/src/Makevars.win | 9 qs2-0.2.0/qs2/src/RcppExports.cpp | 57 qs2-0.2.0/qs2/src/ZSTD/zstd.c | 4391 ++++++++++++++--------- qs2-0.2.0/qs2/src/ZSTD/zstd.h | 366 + qs2-0.2.0/qs2/src/ZSTD/zstd_errors.h |only qs2-0.2.0/qs2/src/ascii_encoding/base85.h | 3 qs2-0.2.0/qs2/src/ascii_encoding/base91.h | 25 qs2-0.2.0/qs2/src/qd_deserializer.h | 231 - qs2-0.2.0/qs2/src/qd_serializer.h | 102 qs2-0.2.0/qs2/src/qdata_cpp_external_api.h |only qs2-0.2.0/qs2/src/qs_deserializer.h | 2 qs2-0.2.0/qs2/src/qs_serializer.h | 2 qs2-0.2.0/qs2/src/qx_dump.h | 21 qs2-0.2.0/qs2/src/qx_file_headers.h | 210 - qs2-0.2.0/qs2/src/qx_functions.cpp | 522 +- qs2-0.2.0/qs2/src/qx_unwind_protect.h |only qs2-0.2.0/qs2/src/r_error_policy.h |only qs2-0.2.0/qs2/src/zstd_file_functions.h | 350 + qs2-0.2.0/qs2/tests/00_smoke_testing.R |only qs2-0.2.0/qs2/tests/qdata_cpp_external_testing.R |only qs2-0.2.0/qs2/tests/utility_testing.R | 38 qs2-0.2.0/qs2/tests/zz_correctness_testing.R |only qs2-0.2.0/qs2/vignettes/vignette.rmd | 119 64 files changed, 4610 insertions(+), 2908 deletions(-)
Title: Tools for Building OLS Regression Models
Description: Tools designed to make it easier for users, particularly beginner/intermediate R users
to build ordinary least squares regression models. Includes comprehensive regression output,
heteroskedasticity tests, collinearity diagnostics, residual diagnostics, measures of influence,
model fit assessment and variable selection procedures.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between olsrr versions 0.6.1 dated 2024-11-06 and 0.7.0 dated 2026-04-22
DESCRIPTION | 8 LICENSE | 2 MD5 | 220 +++++---- NAMESPACE | 29 + NEWS.md | 20 R/ols-anova.R |only R/ols-best-subsets-regression.R | 20 R/ols-model-info.R |only R/ols-model-performance.R |only R/ols-step.R | 23 R/ols-stepaic-backward-regression.R | 38 + R/ols-stepaic-both-regression.R | 36 + R/ols-stepaic-forward-regression.R | 38 + R/ols-stepwise-backward-regression.R | 20 R/ols-stepwise-forward-regression.R | 14 R/ols-stepwise-hierarchical.R | 41 + R/ols-stepwise-regression.R | 15 R/ols-stepwise-utils.R | 9 R/output.R | 100 ++++ R/todo.R |only R/utils.R | 78 --- README.md | 4 build/vignette.rds |binary inst/doc/heteroskedasticity.html | 5 inst/doc/influence_measures.html | 5 inst/doc/intro.html | 5 inst/doc/regression_diagnostics.html | 9 inst/doc/residual_diagnostics.html | 7 inst/doc/variable_selection.html | 5 man/ols_anova.Rd |only man/ols_compare_model_performance.Rd |only man/ols_count_obs.Rd |only man/ols_count_parameters.Rd |only man/ols_get_call.Rd |only man/ols_get_data.Rd 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man/ols_step_forward_r2.Rd | 6 man/ols_step_forward_sbc.Rd | 6 man/ols_step_forward_sbic.Rd | 6 tests/testthat/_snaps/anova.md |only tests/testthat/_snaps/model-performance.md |only tests/testthat/_snaps/step-backward-output.md | 230 +++++++++ tests/testthat/_snaps/step-forward-output.md | 241 ++++++++++ tests/testthat/_snaps/stepwise-output.md | 221 +++++++++ tests/testthat/_snaps/visual/allplot-1.svg | 4 tests/testthat/_snaps/visual/allplot-2.svg | 4 tests/testthat/_snaps/visual/allplot-3.svg | 4 tests/testthat/_snaps/visual/allplot-4.svg | 4 tests/testthat/_snaps/visual/allplot-5.svg | 4 tests/testthat/_snaps/visual/allplot-6.svg | 4 tests/testthat/_snaps/visual/bestplot-1.svg | 66 +- tests/testthat/_snaps/visual/bestplot-2.svg | 66 +- tests/testthat/_snaps/visual/bestplot-3.svg | 70 +- tests/testthat/_snaps/visual/bestplot-4.svg | 72 +- tests/testthat/_snaps/visual/bestplot-5.svg | 66 +- tests/testthat/_snaps/visual/bestplot-6.svg | 66 +- 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128 files changed, 1644 insertions(+), 519 deletions(-)
More information about GLMBasedRaschEstimation at CRAN
Permanent link
Title: Access and Analyse 'VALD' Data via Our External 'APIs'
Description: Provides helper functions and wrappers to simplify authentication,
data retrieval, and result processing from the 'VALD' 'APIs'.
Designed to streamline integration for analysts and researchers working
with 'VALD's external 'APIs'.
For further documentation on integrating with 'VALD' 'APIs', see:
<https://support.vald.com/hc/en-au/articles/23415335574553-How-to-integrate-with-VALD-APIs>.
For a step-by-step guide to using this package, see:
<https://support.vald.com/hc/en-au/articles/48730811824281-A-guide-to-using-the-valdr-R-package>.
Author: Kieran Harrison [aut, cre],
VALD Support [ctb],
VALD [cph]
Maintainer: Kieran Harrison <k.harrison@vald.com>
Diff between valdr versions 2.2.0 dated 2026-02-25 and 3.0.0 dated 2026-04-22
DESCRIPTION | 6 MD5 | 30 +++- NAMESPACE | 3 R/config.R | 14 +- R/forcedecks_tests.R | 17 -- R/forcedecks_trials.R | 5 R/forceframe_reps_by_id.R |only R/session.R | 75 ++++++++++ R/smartspeed_tests.R |only R/utils.R | 219 ++++++++++++++++++++++++++++++++ man/dot-build_forcedecks_df.Rd |only man/dot-build_forceframe_reps_df.Rd |only man/dot-build_smartspeed_df.Rd |only man/dot-extract_nested.Rd |only man/dot-extract_nested_json.Rd |only man/get_forceframe_repetitions_by_id.Rd |only man/get_forceframe_reps_by_id.Rd |only man/get_forceframe_tests_only.Rd | 2 man/get_nordbord_tests_only.Rd | 2 man/get_smartspeed_data.Rd |only man/get_smartspeed_tests.Rd |only man/get_smartspeed_tests_only.Rd |only 22 files changed, 335 insertions(+), 38 deletions(-)
Title: Statistical Inference for Unsupervised Learning
Description: Test for association between the observed data and their estimated latent variables. The jackstraw package provides a resampling strategy and testing scheme to estimate statistical significance of association between the observed data and their latent variables. Depending on the data type and the analysis aim, the latent variables may be estimated by principal component analysis (PCA), factor analysis (FA), K-means clustering, and related unsupervised learning algorithms. The jackstraw methods learn over-fitting characteristics inherent in this circular analysis, where the observed data are used to estimate the latent variables and used again to test against that estimated latent variables. When latent variables are estimated by PCA, the jackstraw enables statistical testing for association between observed variables and latent variables, as estimated by low-dimensional principal components (PCs). This essentially leads to identifying variables that are significantly associated with PC [...truncated...]
Author: Neo Christopher Chung [aut, cre] ,
John D. Storey [aut] ,
Wei Hao [aut],
Alejandro Ochoa [aut]
Maintainer: Neo Christopher Chung <nchchung@gmail.com>
This is a re-admission after prior archival of version 1.3.17 dated 2024-09-16
Diff between jackstraw versions 1.3.17 dated 2024-09-16 and 1.3.21 dated 2026-04-22
DESCRIPTION | 20 +++---- MD5 | 36 +++++++------ NAMESPACE | 2 NEWS.md | 24 ++++++++ R/jackstraw_lfa.R | 13 ++++ R/ncp_est.R |only R/pvals_nc_chisq.R |only README.md | 3 - build/partial.rdb |binary man/Jurkat293T.Rd | 2 man/jackstraw_cluster.Rd | 4 - man/jackstraw_irlba.Rd | 2 man/jackstraw_kmeans.Rd | 2 man/jackstraw_kmeanspp.Rd | 2 man/jackstraw_lfa.Rd | 13 ++++ man/jackstraw_pam.Rd | 2 man/jackstraw_pca.Rd | 2 man/jackstraw_rpca.Rd | 2 man/ncp_est.Rd |only man/pvals_nc_chisq.Rd |only tests/testthat/test-jackstraw.R | 108 +++++++++++++++++++++++++++++++++++++--- 21 files changed, 189 insertions(+), 48 deletions(-)
Title: Quality Evaluation of Core Collections
Description: Implements various quality evaluation statistics to assess the
value of plant germplasm core collections using qualitative and
quantitative phenotypic trait data according to Odong et al. (2015)
<doi:10.1007/s00122-012-1971-y>.
Author: J. Aravind [aut, cre] ,
Vikender Kaur [aut] ,
Dhammaprakash Pandhari Wankhede [aut] ,
Joghee Nanjundan [aut] ,
ICAR-NBGPR [cph]
Maintainer: J. Aravind <j.aravind@icar.org.in>
Diff between EvaluateCore versions 0.1.4 dated 2025-12-18 and 0.1.5 dated 2026-04-22
DESCRIPTION | 12 MD5 | 78 ++-- NEWS.md | 8 R/EvaluateCore-deprecated.R | 2 R/bar.evaluate.core.R | 2 R/box.evaluate.core.R | 2 R/cassava_CC.R | 2 R/cassava_EC.R | 2 R/checks.evaluate.core.R | 2 R/chisquare.evalueate.core.R | 2 R/corr.evaluate.core.R | 2 R/coverage.evaluate.core.R | 2 R/cr.evaluate.core.R | 2 R/dist.evaluate.core.R | 2 R/diversity.evaluate.core.R | 154 ++++++--- R/freqdist.evaluate.core.R | 2 R/globals.R | 2 R/iqr.evaluate.core.R | 2 R/levene.evaluate.core.R | 2 R/pca.evaluate.core.R | 2 R/pdfdist.evaluate.core.R | 2 R/percentdiff.evaluate.core.R | 5 R/qq.evaluate.core.R | 2 R/rpr.evaluate.core.R | 2 R/scv.evaluate.core.R | 2 R/shannon.evaluate.core.R | 2 R/signtest.evaluate.core.R | 2 R/snk.evaluate.core.R | 2 R/ttest.evaluate.core.R | 2 R/vpf.evaluate.core.R | 2 R/vr.evaluate.core.R | 2 R/wilcox.evaluate.core.R | 2 R/xtra.R | 2 README.md | 107 ++---- build/partial.rdb |binary build/stage23.rdb |binary inst/CITATION | 4 inst/REFERENCES.bib | 610 +++++++++++++++++++++------------------ man/diversity.evaluate.core.Rd | 100 ++++-- man/percentdiff.evaluate.core.Rd | 3 40 files changed, 633 insertions(+), 504 deletions(-)
Title: Discover and Call 'Bund.dev' APIs
Description: Provides a registry of APIs listed on <https://bund.dev> and a core
'OpenAPI' client layer to explore specs and perform requests. Adapter helpers
return tidy data frames for supported APIs, with optional response caching and
rate limiting guidance.
Author: Michael Buecker [aut, cre]
Maintainer: Michael Buecker <michael.buecker@fh-muenster.de>
This is a re-admission after prior archival of version 0.2.1 dated 2026-02-16
Diff between bunddev versions 0.2.1 dated 2026-02-16 and 0.2.3 dated 2026-04-22
DESCRIPTION | 10 MD5 | 533 ++++++++++---------- NAMESPACE | 8 NEWS.md | 37 + R/adapt_abfallnavi.R | 180 +++++-- R/adapt_ausbildungssuche.R | 88 ++- R/adapt_autobahn.R | 417 +++++++++++++--- R/adapt_bewerberboerse.R | 116 +++- R/adapt_bundeshaushalt.R | 55 +- R/adapt_bundesrat.R | 202 +++++-- R/adapt_bundestag.R | 144 ++++- R/adapt_bundestag_lobbyregister.R | 35 + R/adapt_dashboard_deutschland.R | 103 +++- R/adapt_ddb.R | 97 +++ R/adapt_destatis.R | 94 ++- R/adapt_deutschlandatlas.R | 42 + R/adapt_diga.R | 264 ++++++++-- R/adapt_dip_bundestag.R | 638 +++++++++++++++++++++---- R/adapt_dwd.R | 231 ++++++--- R/adapt_eco_visio.R | 35 + R/adapt_feiertage.R | 21 R/adapt_handelsregister.R | 38 + R/adapt_hilfsmittel.R | 285 +++++++++-- R/adapt_hochwasserzentralen.R | 96 ++- R/adapt_jobsuche.R | 131 ++++- R/adapt_klinikatlas.R |only R/adapt_ladestationen.R | 47 + R/adapt_lebensmittelwarnung.R | 44 + R/adapt_luftqualitaet.R | 278 +++++++--- R/adapt_marktstammdaten.R | 303 +++++++++-- R/adapt_mudab.R | 251 +++++++-- R/adapt_nina.R | 347 +++++++++---- R/adapt_pegel_online.R | 178 +++++- R/adapt_pflanzenschutzmittelzulassung.R | 141 ++++- R/adapt_regionalatlas.R | 31 + R/adapt_smard.R | 54 +- R/adapt_tagesschau.R | 123 +++- R/adapt_travelwarning.R | 208 ++++++-- R/bunddev_endpoints.R | 1 R/core_auth.R | 17 R/core_cache.R | 38 + R/core_call.R | 18 R/core_openapi.R | 30 + R/core_registry.R | 24 R/core_throttle.R | 14 R/core_tidy.R | 7 R/core_time.R | 2 README.md | 8 build/vignette.rds |binary inst/doc/getting-started.html | 4 inst/registry/endpoints.yml | 32 + inst/registry/registry.yml | 9 man/abfallnavi_fraktionen.Rd | 27 - man/abfallnavi_fraktionen_hausnummern.Rd | 27 - man/abfallnavi_fraktionen_strassen.Rd | 27 - man/abfallnavi_hausnummern.Rd | 27 - man/abfallnavi_kalender_download.Rd | 27 - man/abfallnavi_ort.Rd | 25 man/abfallnavi_orte.Rd | 27 - man/abfallnavi_strassen.Rd | 30 + man/abfallnavi_termine_hausnummern.Rd | 29 - man/abfallnavi_termine_strassen.Rd | 29 - man/adapt_klinikatlas.Rd |only man/ausbildungssuche_details.Rd | 16 man/ausbildungssuche_search.Rd | 86 ++- man/autobahn_charging_station_details.Rd | 36 + man/autobahn_charging_stations.Rd | 56 +- man/autobahn_closure_details.Rd | 35 + man/autobahn_closures.Rd | 56 +- man/autobahn_parking_lorries.Rd | 56 +- man/autobahn_parking_lorry_details.Rd | 36 + man/autobahn_roads.Rd | 22 man/autobahn_roadwork_details.Rd | 35 + man/autobahn_roadworks.Rd | 56 +- man/autobahn_warning_details.Rd | 35 + man/autobahn_warnings.Rd | 56 +- man/autobahn_webcam_details.Rd | 35 + man/autobahn_webcams.Rd | 56 +- man/bewerberboerse_details.Rd | 51 + man/bewerberboerse_search.Rd | 66 ++ man/bunddev_auth_get.Rd | 7 man/bunddev_auth_set.Rd | 16 man/bunddev_cache_dir.Rd | 19 man/bunddev_call.Rd | 30 + man/bunddev_call_tidy.Rd | 19 man/bunddev_endpoints.Rd | 33 + man/bunddev_info.Rd | 8 man/bunddev_list.Rd | 9 man/bunddev_ms_to_posix.Rd | 14 man/bunddev_parameter_values.Rd | 16 man/bunddev_parameters.Rd | 25 man/bunddev_parameters_for.Rd | 16 man/bunddev_rate_limit_get.Rd | 10 man/bunddev_rate_limit_set.Rd | 10 man/bunddev_registry.Rd | 18 man/bunddev_search.Rd | 9 man/bunddev_spec.Rd | 18 man/bunddev_spec_path.Rd | 15 man/bunddev_timestamp_to_ms.Rd | 14 man/bundeshaushalt_budget_data.Rd | 65 +- man/bundesrat_aktuelles.Rd | 32 + man/bundesrat_mitglieder.Rd | 32 + man/bundesrat_plenum_aktuelle_sitzung.Rd | 32 + man/bundesrat_plenum_chronologisch.Rd | 32 + man/bundesrat_plenum_kompakt.Rd | 32 + man/bundesrat_plenum_naechste_sitzungen.Rd | 32 + man/bundesrat_praesidium.Rd | 32 + man/bundesrat_startlist.Rd | 34 + man/bundesrat_stimmverteilung.Rd | 32 + man/bundesrat_termine.Rd | 32 + man/bundestag_article.Rd | 28 - man/bundestag_ausschuesse.Rd | 28 - man/bundestag_ausschuss.Rd | 28 - man/bundestag_conferences.Rd | 28 - man/bundestag_lobbyregister_search.Rd | 35 + man/bundestag_mdb_bio.Rd | 28 - man/bundestag_mdb_index.Rd | 28 - man/bundestag_speaker.Rd | 28 - man/bundestag_video_feed.Rd | 28 - man/dashboard_deutschland_geo.Rd | 41 + man/dashboard_deutschland_get.Rd | 51 + man/dashboard_deutschland_indicators.Rd | 26 - man/ddb_institution_sectors.Rd | 20 man/ddb_institutions.Rd | 50 + man/ddb_search.Rd | 49 + man/destatis_catalogue_cubes.Rd | 41 + man/destatis_catalogue_tables.Rd | 41 + man/destatis_data_cube.Rd | 39 + man/destatis_data_table.Rd | 39 + man/deutschlandatlas_query.Rd | 50 + man/diga_catalog_entries.Rd | 52 +- man/diga_charge_item_definitions.Rd | 54 +- man/diga_device_definitions.Rd | 53 +- man/diga_organizations.Rd | 52 +- man/diga_questionnaire_responses.Rd | 51 + man/diga_questionnaires.Rd | 52 +- man/dip_bundestag_aktivitaet.Rd | 54 +- man/dip_bundestag_aktivitaet_list.Rd | 72 ++ man/dip_bundestag_drucksache.Rd | 60 ++ man/dip_bundestag_drucksache_list.Rd | 78 ++- man/dip_bundestag_drucksache_text.Rd | 43 + man/dip_bundestag_drucksache_text_list.Rd | 79 ++- man/dip_bundestag_person.Rd | 52 +- man/dip_bundestag_person_list.Rd | 70 ++ man/dip_bundestag_plenarprotokoll.Rd | 55 +- man/dip_bundestag_plenarprotokoll_list.Rd | 73 ++ man/dip_bundestag_plenarprotokoll_text.Rd | 43 + man/dip_bundestag_plenarprotokoll_text_list.Rd | 74 ++ man/dip_bundestag_vorgang.Rd | 63 ++ man/dip_bundestag_vorgang_list.Rd | 87 ++- man/dip_bundestag_vorgangsposition.Rd | 66 ++ man/dip_bundestag_vorgangsposition_list.Rd | 84 +++ man/dwd_alpine_forecast_text.Rd | 23 man/dwd_avalanche_warnings.Rd | 23 man/dwd_coast_warnings.Rd | 44 + man/dwd_crowd_reports.Rd | 48 + man/dwd_municipality_warnings.Rd | 37 + man/dwd_sea_warning_text.Rd | 23 man/dwd_station_overview.Rd | 51 + man/dwd_warnings_nowcast.Rd | 54 +- man/eco_visio_counters.Rd | 22 man/eco_visio_data.Rd | 19 man/feiertage_list.Rd | 21 man/handelsregister_search.Rd | 38 + man/hilfsmittel_nachweisschema.Rd | 43 + man/hilfsmittel_produkt.Rd | 60 ++ man/hilfsmittel_produktart.Rd | 53 +- man/hilfsmittel_produkte.Rd | 54 +- man/hilfsmittel_produktgruppe.Rd | 57 +- man/hilfsmittel_tree.Rd | 28 - man/hilfsmittel_untergruppe.Rd | 53 +- man/hochwasserzentralen_bundeslaender.Rd | 23 man/hochwasserzentralen_bundesland_geojson.Rd | 39 + man/hochwasserzentralen_bundesland_info.Rd | 23 man/hochwasserzentralen_lagepegel.Rd | 23 man/hochwasserzentralen_pegel_info.Rd | 23 man/jobsuche_logo.Rd | 17 man/jobsuche_search.Rd | 79 ++- man/jobsuche_search_app.Rd | 79 ++- man/klinikatlas_german_places.Rd |only man/klinikatlas_german_states.Rd |only man/klinikatlas_hospital_detail.Rd |only man/klinikatlas_icd_codes.Rd |only man/klinikatlas_locations.Rd |only man/klinikatlas_ops_codes.Rd |only man/klinikatlas_search.Rd |only man/klinikatlas_states.Rd |only man/ladestationen_query.Rd | 47 + man/lebensmittelwarnung_warnings.Rd | 44 + man/luftqualitaet_airquality.Rd | 43 + man/luftqualitaet_airquality_limits.Rd | 31 + man/luftqualitaet_annualbalances.Rd | 44 + man/luftqualitaet_components.Rd | 45 + man/luftqualitaet_measures.Rd | 43 + man/luftqualitaet_measures_limits.Rd | 33 + man/luftqualitaet_meta.Rd | 45 + man/luftqualitaet_networks.Rd | 44 + man/luftqualitaet_scopes.Rd | 45 + man/luftqualitaet_stationsettings.Rd | 44 + man/luftqualitaet_stationtypes.Rd | 43 + man/luftqualitaet_thresholds.Rd | 45 + man/luftqualitaet_transgressions.Rd | 45 + man/luftqualitaet_transgressiontypes.Rd | 44 + man/marktstammdaten_filters_gaserzeugung.Rd | 43 + man/marktstammdaten_filters_gasverbrauch.Rd | 43 + man/marktstammdaten_filters_stromerzeugung.Rd | 43 + man/marktstammdaten_filters_stromverbrauch.Rd | 43 + man/marktstammdaten_gaserzeugung.Rd | 57 +- man/marktstammdaten_gasverbrauch.Rd | 57 +- man/marktstammdaten_stromerzeugung.Rd | 58 +- man/marktstammdaten_stromverbrauch.Rd | 57 +- man/mudab_parameter_values.Rd | 38 + man/mudab_parameters.Rd | 33 + man/mudab_parameters_biologie.Rd | 33 + man/mudab_parameters_biota.Rd | 33 + man/mudab_parameters_sediment.Rd | 33 + man/mudab_parameters_wasser.Rd | 33 + man/mudab_plc_measurements.Rd | 44 + man/mudab_plc_parameters.Rd | 36 + man/mudab_plc_stations.Rd | 34 + man/mudab_project_stations.Rd | 46 + man/mudab_stations.Rd | 31 + man/nina_archive_mowas.Rd | 36 + man/nina_archive_mowas_mapping.Rd | 36 + man/nina_covid_infos.Rd | 35 + man/nina_covid_map.Rd | 35 + man/nina_covid_rules.Rd | 36 + man/nina_covid_ticker.Rd | 35 + man/nina_covid_ticker_message.Rd | 36 + man/nina_dashboard.Rd | 39 + man/nina_event_code.Rd | 36 + man/nina_event_codes.Rd | 39 + man/nina_faqs.Rd | 40 + man/nina_logo.Rd | 36 + man/nina_logos.Rd | 39 + man/nina_mapdata.Rd | 46 + man/nina_mowas_rss.Rd | 36 + man/nina_notfalltipps.Rd | 40 + man/nina_version.Rd | 37 + man/nina_warning.Rd | 36 + man/nina_warning_geojson.Rd | 36 + man/nina_warning_json.Rd | 44 + man/nina_warnings.Rd | 44 + man/pegel_online_measurements.Rd | 25 man/pegel_online_measurements_plot.Rd | 24 man/pegel_online_station.Rd | 57 +- man/pegel_online_stations.Rd | 61 ++ man/pegel_online_timeseries.Rd | 42 + man/pegel_online_waters.Rd | 55 +- man/psm_anwendungen.Rd | 58 ++ man/psm_kultur_gruppen.Rd | 36 + man/psm_mittel.Rd | 39 + man/psm_schadorg_gruppen.Rd | 36 + man/psm_stand.Rd | 20 man/psm_wirkstoffe.Rd | 37 + man/regionalatlas_query.Rd | 31 + man/smard_indices.Rd | 18 man/smard_table.Rd | 24 man/smard_timeseries.Rd | 23 man/tagesschau_channels.Rd | 29 - man/tagesschau_homepage.Rd | 57 +- man/tagesschau_news.Rd | 28 - man/tagesschau_search.Rd | 29 - man/travelwarning_healthcare.Rd | 33 + man/travelwarning_representatives_country.Rd | 51 + man/travelwarning_representatives_germany.Rd | 51 + man/travelwarning_state_names.Rd | 34 + man/travelwarning_warning.Rd | 44 + man/travelwarning_warnings.Rd | 41 + tests/testthat/test-dashboard-deutschland.R | 17 tests/testthat/test-endpoints.R | 18 tests/testthat/test-klinikatlas.R |only tests/testthat/test-registry.R | 9 273 files changed, 11769 insertions(+), 2531 deletions(-)
Title: Spatial Analysis in Archaeology from Refitting Fragments
Description: Methods to analyse spatial units in archaeology from the refitting relationships between fragments of objects scattered in these units (e.g. stratigraphic layers). Graphs are used to model archaeological observations. The package is mainly based on the 'igraph' package for graph analysis. Functions can: 1) create, manipulate, visualise, and simulate fragmentation graphs, 2) measure the cohesion and admixture of archaeological spatial units, and 3) characterise the topology of a specific set of refitting relationships. A series of published empirical datasets is included. Documentation about 'archeofrag' is provided by a vignette and by the accompanying scientific papers: Plutniak (2021, Journal of Archaeological Science, <doi:10.1016/j.jas.2021.105501>) and Plutniak (2022, Journal of Open Source Software, <doi:10.21105/joss.04335>). This package is complemented by the 'archeofrag.gui' R package, a companion GUI application available at <https://analytics.huma-num.fr/Seba [...truncated...]
Author: Sebastien Plutniak [aut, cre]
Maintainer: Sebastien Plutniak <sebastien.plutniak@posteo.net>
Diff between archeofrag versions 1.2.3 dated 2025-09-26 and 1.2.4 dated 2026-04-22
DESCRIPTION | 10 +-- MD5 | 17 +++--- NAMESPACE | 1 NEWS.md | 6 ++ R/frag.cohesion.ranking.R |only R/make_frag_object.R | 4 - TODO | 19 +++++-- inst/doc/archeofrag-vignette.html | 72 ++++++++++++++-------------- man/frag.cohesion.ranking.Rd |only man/frag.layers.cohesion.Rd | 2 tests/testthat/test.frag.cohesion.ranking.R |only 11 files changed, 76 insertions(+), 55 deletions(-)
Title: Weighting for Covariate Balance in Observational Studies
Description: Generates balancing weights for causal effect estimation in observational studies with
binary, multi-category, or continuous point or longitudinal treatments by easing and
extending the functionality of several R packages and providing in-house estimation methods.
Available methods include those that rely on parametric modeling, optimization, and machine learning. Also
allows for assessment of weights and checking of covariate balance by interfacing directly
with the 'cobalt' package. Methods for estimating weighted regression models that take into account
uncertainty in the estimation of the weights via M-estimation or bootstrapping are available. See the vignette "Installing Supporting Packages" for instructions on how
to install any optional package 'WeightIt' uses, including those that may not be on CRAN.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between WeightIt versions 1.6.0 dated 2026-03-19 and 1.7.0 dated 2026-04-22
WeightIt-1.6.0/WeightIt/R/arg_functions.R |only WeightIt-1.7.0/WeightIt/DESCRIPTION | 18 WeightIt-1.7.0/WeightIt/MD5 | 137 - WeightIt-1.7.0/WeightIt/NAMESPACE | 2 WeightIt-1.7.0/WeightIt/NEWS.md | 20 WeightIt-1.7.0/WeightIt/R/ESS.R | 4 WeightIt-1.7.0/WeightIt/R/anova.glm_weightit.R | 68 WeightIt-1.7.0/WeightIt/R/as.weightit.R | 68 WeightIt-1.7.0/WeightIt/R/calibrate.R | 15 WeightIt-1.7.0/WeightIt/R/coxph_weightit.R |only WeightIt-1.7.0/WeightIt/R/dist_functions.R | 28 WeightIt-1.7.0/WeightIt/R/functions_for_processing.R | 291 +- WeightIt-1.7.0/WeightIt/R/get_w_from_ps.R | 29 WeightIt-1.7.0/WeightIt/R/glm_weightit-methods.R | 153 - WeightIt-1.7.0/WeightIt/R/glm_weightit.R | 222 -- WeightIt-1.7.0/WeightIt/R/glm_weightit_helpers.R | 1097 ++++------ WeightIt-1.7.0/WeightIt/R/make_full_rank.R | 8 WeightIt-1.7.0/WeightIt/R/multinom_weightit.R | 184 + WeightIt-1.7.0/WeightIt/R/ordinal_weightit.R | 189 + WeightIt-1.7.0/WeightIt/R/plot.weightit.R | 4 WeightIt-1.7.0/WeightIt/R/predict.glm_weightit.R | 42 WeightIt-1.7.0/WeightIt/R/sbps.R | 210 - WeightIt-1.7.0/WeightIt/R/summary.weightit.R | 53 WeightIt-1.7.0/WeightIt/R/treat.R | 2 WeightIt-1.7.0/WeightIt/R/trim.R | 42 WeightIt-1.7.0/WeightIt/R/utils.R | 202 - WeightIt-1.7.0/WeightIt/R/weightit.R | 115 - WeightIt-1.7.0/WeightIt/R/weightit.fit.R | 132 - WeightIt-1.7.0/WeightIt/R/weightit2bart.R | 6 WeightIt-1.7.0/WeightIt/R/weightit2cbps.R | 238 +- WeightIt-1.7.0/WeightIt/R/weightit2cfd.R | 136 - WeightIt-1.7.0/WeightIt/R/weightit2ebal.R | 801 +++---- WeightIt-1.7.0/WeightIt/R/weightit2energy.R | 136 - WeightIt-1.7.0/WeightIt/R/weightit2gbm.R | 76 WeightIt-1.7.0/WeightIt/R/weightit2glm.R | 91 WeightIt-1.7.0/WeightIt/R/weightit2ipt.R | 22 WeightIt-1.7.0/WeightIt/R/weightit2npcbps.R | 6 WeightIt-1.7.0/WeightIt/R/weightit2optweight.R | 51 WeightIt-1.7.0/WeightIt/R/weightit2ps.R | 4 WeightIt-1.7.0/WeightIt/R/weightit2super.R | 32 WeightIt-1.7.0/WeightIt/R/weightit2user.R | 20 WeightIt-1.7.0/WeightIt/R/weightitMSM.R | 34 WeightIt-1.7.0/WeightIt/README.md | 14 WeightIt-1.7.0/WeightIt/build/stage23.rdb |binary WeightIt-1.7.0/WeightIt/inst/doc/WeightIt.html | 62 WeightIt-1.7.0/WeightIt/inst/doc/estimating-effects.Rmd | 151 - WeightIt-1.7.0/WeightIt/inst/doc/estimating-effects.html | 711 +++--- WeightIt-1.7.0/WeightIt/inst/doc/installing-packages.html | 4 WeightIt-1.7.0/WeightIt/man/WeightIt-package.Rd | 2 WeightIt-1.7.0/WeightIt/man/coxph_weightit.Rd |only WeightIt-1.7.0/WeightIt/man/glm_weightit.Rd | 138 - WeightIt-1.7.0/WeightIt/man/macros/macros.Rd | 3 WeightIt-1.7.0/WeightIt/man/method_ebal.Rd | 24 WeightIt-1.7.0/WeightIt/man/method_ipt.Rd | 3 WeightIt-1.7.0/WeightIt/man/multinom_weightit.Rd |only WeightIt-1.7.0/WeightIt/man/ordinal_weightit.Rd |only WeightIt-1.7.0/WeightIt/man/predict.glm_weightit.Rd | 6 WeightIt-1.7.0/WeightIt/man/sbps.Rd | 29 WeightIt-1.7.0/WeightIt/man/weightit.Rd | 2 WeightIt-1.7.0/WeightIt/tests/testthat/helpers.R | 12 WeightIt-1.7.0/WeightIt/tests/testthat/test-glm_weightit.R | 6 WeightIt-1.7.0/WeightIt/tests/testthat/test-method_cbps.R | 32 WeightIt-1.7.0/WeightIt/tests/testthat/test-method_ebal.R | 98 WeightIt-1.7.0/WeightIt/tests/testthat/test-method_glm.R | 22 WeightIt-1.7.0/WeightIt/tests/testthat/test-method_ipt.R | 24 WeightIt-1.7.0/WeightIt/tests/testthat/test-moments.R | 9 WeightIt-1.7.0/WeightIt/tests/testthat/test-multinom_weightit.R | 6 WeightIt-1.7.0/WeightIt/tests/testthat/test-ordinal_weightit.R | 6 WeightIt-1.7.0/WeightIt/tests/testthat/test-update.R | 57 WeightIt-1.7.0/WeightIt/tests/testthat/test-vcov_arg.R | 21 WeightIt-1.7.0/WeightIt/vignettes/estimating-effects.Rmd | 151 - WeightIt-1.7.0/WeightIt/vignettes/references.bib | 15 72 files changed, 3312 insertions(+), 3284 deletions(-)
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 3.0.17 dated 2026-02-27 and 3.0.19 dated 2026-04-22
tweedie-3.0.17/tweedie/src/Doxyfile |only tweedie-3.0.17/tweedie/src/deps.out |only tweedie-3.0.17/tweedie/src/docs |only tweedie-3.0.19/tweedie/DESCRIPTION | 8 tweedie-3.0.19/tweedie/MD5 | 427 ------------ tweedie-3.0.19/tweedie/NEWS.md | 10 tweedie-3.0.19/tweedie/R/tweedie_plot.R | 215 ++++-- tweedie-3.0.19/tweedie/build/partial.rdb |binary tweedie-3.0.19/tweedie/build/vignette.rds |binary tweedie-3.0.19/tweedie/inst/CITATION | 2 tweedie-3.0.19/tweedie/inst/doc/tweedie.html | 46 - tweedie-3.0.19/tweedie/man/tweedie_plot.Rd | 2 tweedie-3.0.19/tweedie/src/Calcs_K.f90 | 11 tweedie-3.0.19/tweedie/src/Makevars.HIDE |only tweedie-3.0.19/tweedie/src/Makevars.in | 7 tweedie-3.0.19/tweedie/src/accelerate.f90 | 78 +- tweedie-3.0.19/tweedie/tests/testthat/Rplots.pdf |binary tweedie-3.0.19/tweedie/tests/testthat/test-other-ptweedie.R | 3 tweedie-3.0.19/tweedie/tests/testthat/tests-valgrind.RHIDE |only 19 files changed, 251 insertions(+), 558 deletions(-)
Title: Mobility Oriented-Parity Metric
Description: A set of tools to perform multiple versions of the Mobility
Oriented-Parity metric. This multivariate analysis helps to characterize
levels of dissimilarity between a set of conditions of reference and another
set of conditions of interest. If predictive models are transferred to
conditions different from those over which models were calibrated (trained),
this metric helps to identify transfer conditions that differ
substantially from those of calibration. These tools are implemented
following principles proposed in Owens et al. (2013)
<doi:10.1016/j.ecolmodel.2013.04.011>, and expanded to obtain more detailed
results that aid in interpretation as in Cobos et al. (2024)
<doi:10.21425/fob.17.132916>.
Author: Marlon E. Cobos [aut, cre] ,
Hannah L. Owens [aut] ,
Jorge Soberon [aut] ,
A. Townsend Peterson [aut]
Maintainer: Marlon E. Cobos <manubio13@gmail.com>
Diff between mop versions 0.1.3 dated 2025-04-24 and 0.1.4 dated 2026-04-22
DESCRIPTION | 21 +++++++++------ MD5 | 26 +++++++++---------- NEWS.md | 6 ++++ R/out_range.R | 14 +++++----- README.md | 54 +++++++++++++++++++++-------------------- man/figures/README-load-1.png |binary man/figures/README-load-2.png |binary man/figures/README-plots-1.png |binary man/figures/README-plots-2.png |binary man/figures/README-plots-3.png |binary man/figures/README-plots-4.png |binary man/figures/README-plots-5.png |binary src/Makevars.ucrt | 1 src/Makevars.win | 2 - 14 files changed, 66 insertions(+), 58 deletions(-)
Title: A Centralized Metadata Object Focus on Clinical Trial Data
Programming Workflows
Description: Create an immutable container holding metadata for the
purpose of better enabling programming activities and functionality of
other packages within the clinical programming workflow.
Author: Liam Hobby [aut, cre],
Christina Fillmore [aut] ,
Bill Denney [aut],
Maya Gans [aut] ,
Ashley Tarasiewicz [aut],
Mike Stackhouse [aut] ,
Tamara Senior [aut],
GSK/Atorus JPT [cph, fnd]
Maintainer: Liam Hobby <liam.f.hobby@gsk.com>
Diff between metacore versions 0.2.1 dated 2025-07-21 and 0.3.0 dated 2026-04-22
metacore-0.2.1/metacore/man/check_columns.Rd |only metacore-0.3.0/metacore/DESCRIPTION | 12 metacore-0.3.0/metacore/MD5 | 83 metacore-0.3.0/metacore/NAMESPACE | 2 metacore-0.3.0/metacore/NEWS.md | 141 - metacore-0.3.0/metacore/R/DatasetMeta.R | 111 metacore-0.3.0/metacore/R/checks.R | 64 metacore-0.3.0/metacore/R/metacore-package.R |only metacore-0.3.0/metacore/R/metacore.R | 881 +++--- metacore-0.3.0/metacore/R/spec_builder.R | 1213 +++++---- metacore-0.3.0/metacore/R/utils.R | 271 +- metacore-0.3.0/metacore/R/validators.R | 609 ++-- metacore-0.3.0/metacore/R/xml_builders.R | 679 ++--- metacore-0.3.0/metacore/R/xml_helpers.R | 18 metacore-0.3.0/metacore/R/zzz.R | 70 metacore-0.3.0/metacore/README.md | 39 metacore-0.3.0/metacore/build/vignette.rds |binary metacore-0.3.0/metacore/inst/WORDLIST |only metacore-0.3.0/metacore/inst/doc/Building_Specification_Readers.R | 129 - metacore-0.3.0/metacore/inst/doc/Building_Specification_Readers.Rmd | 146 - metacore-0.3.0/metacore/inst/doc/Building_Specification_Readers.html | 676 ++--- metacore-0.3.0/metacore/inst/doc/Example.R | 2 metacore-0.3.0/metacore/inst/doc/Example.Rmd | 2 metacore-0.3.0/metacore/inst/doc/Example.html | 131 - metacore-0.3.0/metacore/man/create_tbl.Rd | 4 metacore-0.3.0/metacore/man/define_to_metacore.Rd | 21 metacore-0.3.0/metacore/man/figures/labeled-ds_vars.png |binary metacore-0.3.0/metacore/man/figures/labeled_schema.png |binary metacore-0.3.0/metacore/man/figures/lifecycle-deprecated.svg |only metacore-0.3.0/metacore/man/figures/lifecycle-experimental.svg |only metacore-0.3.0/metacore/man/figures/lifecycle-stable.svg |only metacore-0.3.0/metacore/man/figures/lifecycle-superseded.svg |only metacore-0.3.0/metacore/man/is_DatasetMeta.Rd | 6 metacore-0.3.0/metacore/man/metacore-package.Rd |only metacore-0.3.0/metacore/man/metacore.Rd | 24 metacore-0.3.0/metacore/man/select_dataset.Rd | 24 metacore-0.3.0/metacore/man/spec_to_metacore.Rd | 40 metacore-0.3.0/metacore/man/spec_type_to_ds_vars.Rd | 2 metacore-0.3.0/metacore/man/verify_DatasetMeta.Rd | 6 metacore-0.3.0/metacore/tests/testthat/spec_failed_regex.xlsx |only metacore-0.3.0/metacore/tests/testthat/test-checks.R | 77 metacore-0.3.0/metacore/tests/testthat/test-metacore.R | 487 +++ metacore-0.3.0/metacore/tests/testthat/test-reader.R | 1272 +++++----- metacore-0.3.0/metacore/tests/testthat/test-utils.R | 331 ++ metacore-0.3.0/metacore/tests/testthat/test-validators.R | 243 + metacore-0.3.0/metacore/vignettes/Building_Specification_Readers.Rmd | 146 - metacore-0.3.0/metacore/vignettes/Example.Rmd | 2 47 files changed, 4767 insertions(+), 3197 deletions(-)
Title: JavaScript Object Signing and Encryption
Description: Read and write JSON Web Keys (JWK, rfc7517), generate and verify JSON
Web Signatures (JWS, rfc7515) and encode/decode JSON Web Tokens (JWT, rfc7519)
<https://datatracker.ietf.org/wg/jose/documents/>. These standards provide
modern signing and encryption formats that are natively supported by browsers
via the JavaScript WebCryptoAPI <https://www.w3.org/TR/webcrypto/#jose>,
and used by services like OAuth 2.0, LetsEncrypt, and Github Apps.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between jose versions 1.2.1 dated 2024-10-04 and 2.0.0 dated 2026-04-22
DESCRIPTION | 12 ++++----- MD5 | 41 +++++++++++++++++--------------- NAMESPACE | 5 ++++ NEWS | 4 +++ R/claim.R | 2 - R/jwt.R | 51 ++++++++++++++++++++++++++++++----------- R/read.R | 12 +++++++++ R/write.R | 20 ++++++++++++++++ build/vignette.rds |binary inst/doc/jwk.Rmd | 2 - inst/doc/jwk.html | 30 ++++++++++++------------ inst/doc/jwt.R | 4 +++ inst/doc/jwt.html | 32 +++++++++++++------------ man/jwt_claim.Rd | 2 - man/jwt_encode.Rd | 2 - tests/keys/ed25519.json |only tests/keys/ed25519.pub.json |only tests/testthat/test_ec.R | 5 ++++ tests/testthat/test_ed25519.R |only tests/testthat/test_examples.R | 11 ++++++++ tests/testthat/test_rsa.R | 4 +++ tests/testthat/test_sizes.R | 7 +++++ vignettes/jwk.Rmd | 2 - 23 files changed, 175 insertions(+), 73 deletions(-)
Title: Data Science for Psychologists
Description: All datasets and functions required for the examples and exercises of the book "Data Science for Psychologists" (by Hansjoerg Neth, Konstanz University, 2026, <doi:10.5281/zenodo.7229812>), freely available at <https://hneth-ds4psy.share.connect.posit.cloud/>. The book and corresponding courses introduce principles and methods of data science to students of psychology and other biological or social sciences. The 'ds4psy' package primarily provides datasets, but also functions for data generation and manipulation (e.g., of text and time data) and graphics that are used in the book and its exercises. All functions included in 'ds4psy' are designed to be explicit and instructive, rather than efficient or elegant.
Author: Hansjoerg Neth [aut, cre]
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between ds4psy versions 1.2.0 dated 2025-11-05 and 1.3.0 dated 2026-04-22
DESCRIPTION | 12 ++-- MD5 | 28 +++++------ NEWS.md | 101 +++++++++++++++++++++++++++++----------- R/data.R | 12 +++- README.md | 126 +++++++++++++++++++++++++++++++++------------------ build/partial.rdb |binary build/vignette.rds |binary data/i2ds_survey.rda |binary inst/CITATION | 8 +-- inst/WORDLIST | 2 inst/doc/ds4psy.R | 21 +++++++- inst/doc/ds4psy.Rmd | 63 ++++++++++++++++++++----- inst/doc/ds4psy.html | 57 +++++++++++++++++------ man/i2ds_survey.Rd | 8 ++- vignettes/ds4psy.Rmd | 63 ++++++++++++++++++++----- 15 files changed, 359 insertions(+), 142 deletions(-)
Title: Compare Detrital Zircon Suites
Description: Compare detrital zircon suites by uploading univariate,
U-Pb age, or bivariate, U-Pb age and Lu-Hf data, in a 'shiny'-based
user-interface. Outputs publication quality figures using 'ggplot2', and
tables of statistics currently in use in the detrital zircon geochronology
community.
Author: Magnus Kristoffersen [aut, cre]
Maintainer: Magnus Kristoffersen <magnus.kristoffersen@geo.uio.no>
Diff between detzrcr versions 0.3.1 dated 2020-07-23 and 0.3.2 dated 2026-04-22
DESCRIPTION | 11 - MD5 | 22 +- NEWS.md | 4 R/calculations.R | 2 R/plotting.R | 155 ++++++++++--------- README.md | 4 build/vignette.rds |binary inst/CITATION | 25 +-- inst/doc/detzrcr-vignette.R | 18 +- inst/doc/detzrcr-vignette.Rmd | 8 - inst/doc/detzrcr-vignette.html | 321 +++++++++++++++++++++++------------------ vignettes/detzrcr-vignette.Rmd | 8 - 12 files changed, 317 insertions(+), 261 deletions(-)
Title: Simulate Package Installation and Attach
Description: Simulates the process of installing a package and then
attaching it. This is a key part of the 'devtools' package as it
allows you to rapidly iterate while developing a package.
Author: Hadley Wickham [aut],
Winston Chang [aut],
Jim Hester [aut],
Lionel Henry [aut, cre],
Posit Software, PBC [cph, fnd],
R Core team [ctb]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between pkgload versions 1.5.1 dated 2026-04-01 and 1.5.2 dated 2026-04-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/dev-topic.R | 21 ++++++++++----------- tests/testthat/test-help.R | 17 +++++++++++++++++ 5 files changed, 39 insertions(+), 18 deletions(-)
Title: 'NetCDF' Geometry and Time Series
Description: Tools to create time series and geometry 'NetCDF' files.
Author: David Blodgett [aut, cre],
Luke Winslow [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between ncdfgeom versions 1.1.6 dated 2024-01-25 and 1.2.2 dated 2026-04-22
ncdfgeom-1.1.6/ncdfgeom/inst/extdata/Yahara_alb.zip |only ncdfgeom-1.1.6/ncdfgeom/inst/extdata/hucDemo/hucPolygons.dbf |only ncdfgeom-1.1.6/ncdfgeom/inst/extdata/hucDemo/hucPolygons.prj |only ncdfgeom-1.1.6/ncdfgeom/inst/extdata/hucDemo/hucPolygons.shp |only ncdfgeom-1.1.6/ncdfgeom/inst/extdata/hucDemo/hucPolygons.shx |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/NHDLine/NHDLine.dbf |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/NHDLine/NHDLine.prj |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/NHDLine/NHDLine.shp |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/NHDLine/NHDLine.shx |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/Yahara_alb/Yahara_River_HRUs_alb_eq.dbf |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/Yahara_alb/Yahara_River_HRUs_alb_eq.prj |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/Yahara_alb/Yahara_River_HRUs_alb_eq.shp |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/Yahara_alb/Yahara_River_HRUs_alb_eq.shx |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/se_sites/se_sitest.dbf |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/se_sites/se_sitest.prj |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/se_sites/se_sitest.shp |only ncdfgeom-1.1.6/ncdfgeom/tests/testthat/data/se_sites/se_sitest.shx |only ncdfgeom-1.2.2/ncdfgeom/DESCRIPTION | 12 ncdfgeom-1.2.2/ncdfgeom/MD5 | 96 ++--- ncdfgeom-1.2.2/ncdfgeom/NAMESPACE | 2 ncdfgeom-1.2.2/ncdfgeom/NEWS.md | 14 ncdfgeom-1.2.2/ncdfgeom/R/calculate_area_intersection_weights.R | 170 +++++++--- ncdfgeom-1.2.2/ncdfgeom/R/create_cell_geometry.R | 12 ncdfgeom-1.2.2/ncdfgeom/R/read_attribute_data.R | 4 ncdfgeom-1.2.2/ncdfgeom/R/read_geometry.R | 8 ncdfgeom-1.2.2/ncdfgeom/R/read_timeseries_dsg.R | 4 ncdfgeom-1.2.2/ncdfgeom/R/write_attribute_data.R | 17 - ncdfgeom-1.2.2/ncdfgeom/R/write_geometry.R | 28 + ncdfgeom-1.2.2/ncdfgeom/R/write_point_dsg.R | 4 ncdfgeom-1.2.2/ncdfgeom/R/write_timeseries_dsg.R | 11 ncdfgeom-1.2.2/ncdfgeom/README.md | 7 ncdfgeom-1.2.2/ncdfgeom/build/vignette.rds |binary ncdfgeom-1.2.2/ncdfgeom/inst/WORDLIST |only ncdfgeom-1.2.2/ncdfgeom/inst/doc/geometry.R | 4 ncdfgeom-1.2.2/ncdfgeom/inst/doc/geometry.html | 7 ncdfgeom-1.2.2/ncdfgeom/inst/doc/ncdfgeom.R | 150 ++++---- ncdfgeom-1.2.2/ncdfgeom/inst/doc/ncdfgeom.Rmd | 4 ncdfgeom-1.2.2/ncdfgeom/inst/doc/ncdfgeom.html | 11 ncdfgeom-1.2.2/ncdfgeom/inst/doc/polygon_intersection.R |only ncdfgeom-1.2.2/ncdfgeom/inst/doc/polygon_intersection.Rmd |only ncdfgeom-1.2.2/ncdfgeom/inst/doc/polygon_intersection.html |only ncdfgeom-1.2.2/ncdfgeom/inst/doc/timeseries.html | 1 ncdfgeom-1.2.2/ncdfgeom/inst/extdata/gdptools_prl_out.csv |only ncdfgeom-1.2.2/ncdfgeom/man/calculate_area_intersection_weights.Rd | 109 ++++-- ncdfgeom-1.2.2/ncdfgeom/man/read_attribute_data.Rd | 2 ncdfgeom-1.2.2/ncdfgeom/man/read_geometry.Rd | 4 ncdfgeom-1.2.2/ncdfgeom/man/read_timeseries_dsg.Rd | 2 ncdfgeom-1.2.2/ncdfgeom/man/write_geometry.Rd | 2 ncdfgeom-1.2.2/ncdfgeom/man/write_timeseries_dsg.Rd | 6 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/data/NHDLine/NHDLine.gpkg |only ncdfgeom-1.2.2/ncdfgeom/tests/testthat/data/Yahara_alb/Yahara_River_HRUs_alb_eq.gpkg |only ncdfgeom-1.2.2/ncdfgeom/tests/testthat/data/se_sites/se_sitest.gpkg |only ncdfgeom-1.2.2/ncdfgeom/tests/testthat/helper-functions.R | 3 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_area_weighted.R | 167 +++++++++ ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_check_ncdf.R | 2 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_create_cell_geometry.R | 4 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_line.R | 2 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_point.R | 2 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_poly.R | 2 ncdfgeom-1.2.2/ncdfgeom/tests/testthat/test_read-write_attribute_data.R | 2 ncdfgeom-1.2.2/ncdfgeom/vignettes/ncdfgeom.Rmd | 4 ncdfgeom-1.2.2/ncdfgeom/vignettes/polygon_intersection.Rmd |only 62 files changed, 601 insertions(+), 278 deletions(-)
Title: Advanced Tables for Markdown/HTML
Description: Tables with state-of-the-art layout elements such as row spanners,
column spanners, table spanners, zebra striping, and more. While allowing
advanced layout, the underlying css-structure is simple in order to maximize
compatibility with common word processors. The package also contains a few
text formatting functions that help outputting text compatible with HTML/LaTeX.
Author: Max Gordon [aut, cre],
Stephen Gragg [aut],
Peter Konings [aut]
Maintainer: Max Gordon <max@gforge.se>
Diff between htmlTable versions 2.4.3 dated 2024-07-20 and 2.5.0 dated 2026-04-22
htmlTable-2.4.3/htmlTable/tests/testthat/structure.tex |only htmlTable-2.4.3/htmlTable/tests/visual_tests/word_test.html |only htmlTable-2.5.0/htmlTable/DESCRIPTION | 8 htmlTable-2.5.0/htmlTable/MD5 | 91 +-- htmlTable-2.5.0/htmlTable/NAMESPACE | 1 htmlTable-2.5.0/htmlTable/NEWS.md | 4 htmlTable-2.5.0/htmlTable/R/htmlTable.R | 22 htmlTable-2.5.0/htmlTable/R/htmlTable_helpers_getStyle.R | 3 htmlTable-2.5.0/htmlTable/R/htmlTable_helpers_prepareColors.R | 27 - htmlTable-2.5.0/htmlTable/R/htmlTable_render_addCells.R | 16 htmlTable-2.5.0/htmlTable/R/htmlTable_render_prAddEmptySpacerCell.R | 4 htmlTable-2.5.0/htmlTable/R/htmlTable_style_handlers.R | 192 +++++++ htmlTable-2.5.0/htmlTable/R/interactiveTable.R | 23 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable.R | 55 +- htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_bindDataListIntoColumns.r | 6 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_checkUniqueness.r | 2 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_extractElementsAndConvertToTbl.R | 4 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_getColTbl.R | 4 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_getRowTbl.r | 7 htmlTable-2.5.0/htmlTable/R/tidyHtmlTable_helpers_removeRowsWithNA.r | 11 htmlTable-2.5.0/htmlTable/R/txtFrmt_round.R | 7 htmlTable-2.5.0/htmlTable/R/txtFrmt_round_data.frame.R | 7 htmlTable-2.5.0/htmlTable/README.md | 125 +---- htmlTable-2.5.0/htmlTable/build/vignette.rds |binary htmlTable-2.5.0/htmlTable/inst/doc/complex_tables.Rmd | 2 htmlTable-2.5.0/htmlTable/inst/doc/complex_tables.html | 11 htmlTable-2.5.0/htmlTable/inst/doc/general.R | 72 +- htmlTable-2.5.0/htmlTable/inst/doc/general.Rmd | 79 +-- htmlTable-2.5.0/htmlTable/inst/doc/general.html | 246 ++++++---- htmlTable-2.5.0/htmlTable/inst/doc/text_formatters.html | 7 htmlTable-2.5.0/htmlTable/inst/doc/tidyHtmlTable.html | 7 htmlTable-2.5.0/htmlTable/inst/examples/concatHtmlTables_example.R | 45 - htmlTable-2.5.0/htmlTable/inst/examples/htmlTable_example.R | 92 +-- htmlTable-2.5.0/htmlTable/inst/examples/interactiveTable_example.R | 15 htmlTable-2.5.0/htmlTable/inst/examples/tidyHtmlTable_example.R | 31 - htmlTable-2.5.0/htmlTable/man/addStyles.Rd | 8 htmlTable-2.5.0/htmlTable/man/concatHtmlTables.Rd | 45 - htmlTable-2.5.0/htmlTable/man/getHtmlTableStyle.Rd | 6 htmlTable-2.5.0/htmlTable/man/hasHtmlTableStyle.Rd | 9 htmlTable-2.5.0/htmlTable/man/highlightRow.Rd |only htmlTable-2.5.0/htmlTable/man/htmlTable.Rd | 94 +-- htmlTable-2.5.0/htmlTable/man/interactiveTable.Rd | 19 htmlTable-2.5.0/htmlTable/man/prGetScriptString.Rd | 2 htmlTable-2.5.0/htmlTable/man/tidyHtmlTable.Rd | 33 - htmlTable-2.5.0/htmlTable/man/txtRound.Rd | 5 htmlTable-2.5.0/htmlTable/tests/testthat/test-api-compatibility.R |only htmlTable-2.5.0/htmlTable/tests/testthat/test-row_highlight.R |only htmlTable-2.5.0/htmlTable/vignettes/complex_tables.Rmd | 2 htmlTable-2.5.0/htmlTable/vignettes/general.Rmd | 79 +-- 49 files changed, 875 insertions(+), 653 deletions(-)
Title: Evaluation of 3D Meteorological and Air Quality Models
Description: Provides tools for post-process, evaluate and visualize results from 3d Meteorological and Air Quality models against point observations (i.e. surface stations) and grid (i.e. satellite) observations.
Author: Daniel Schuch [aut, cre]
Maintainer: Daniel Schuch <underschuch@gmail.com>
Diff between eva3dm versions 1.11 dated 2025-06-02 and 1.20 dated 2026-04-21
eva3dm-1.11/eva3dm/inst/doc/workflow.R |only eva3dm-1.11/eva3dm/inst/doc/workflow.Rmd |only eva3dm-1.11/eva3dm/inst/doc/workflow.html |only eva3dm-1.11/eva3dm/vignettes/workflow.Rmd |only eva3dm-1.20/eva3dm/DESCRIPTION | 8 eva3dm-1.20/eva3dm/LICENSE | 4 eva3dm-1.20/eva3dm/MD5 | 199 eva3dm-1.20/eva3dm/NAMESPACE | 91 eva3dm-1.20/eva3dm/NEWS.md | 99 eva3dm-1.20/eva3dm/R/atr.R | 204 eva3dm-1.20/eva3dm/R/calculate_column.R |only eva3dm-1.20/eva3dm/R/cate.R | 253 eva3dm-1.20/eva3dm/R/daily.R | 131 eva3dm-1.20/eva3dm/R/eva.R | 598 + eva3dm-1.20/eva3dm/R/eva3dm-package.R | 2 eva3dm-1.20/eva3dm/R/extract_8h_max.R | 794 +- eva3dm-1.20/eva3dm/R/extract_mean.R | 750 +- eva3dm-1.20/eva3dm/R/extract_serie.R | 734 +- eva3dm-1.20/eva3dm/R/extract_surgical.R |only eva3dm-1.20/eva3dm/R/get_distances.R | 50 eva3dm-1.20/eva3dm/R/hourly.R | 131 eva3dm-1.20/eva3dm/R/interp.R | 94 eva3dm-1.20/eva3dm/R/io_stats.R | 154 eva3dm-1.20/eva3dm/R/ma8h.R | 129 eva3dm-1.20/eva3dm/R/mda8.R | 84 eva3dm-1.20/eva3dm/R/monthly.R |only eva3dm-1.20/eva3dm/R/ncdump.R | 46 eva3dm-1.20/eva3dm/R/plot_diff.R | 155 eva3dm-1.20/eva3dm/R/plot_legend.R | 184 eva3dm-1.20/eva3dm/R/plot_overlay.R | 352 - eva3dm-1.20/eva3dm/R/plot_rast.R | 950 +-- eva3dm-1.20/eva3dm/R/q2rh.R | 160 eva3dm-1.20/eva3dm/R/rain.R | 120 eva3dm-1.20/eva3dm/R/rast_to_netcdf.R | 152 eva3dm-1.20/eva3dm/R/rh2q.R | 110 eva3dm-1.20/eva3dm/R/sat.R | 290 eva3dm-1.20/eva3dm/R/select.R | 253 eva3dm-1.20/eva3dm/R/stat.R | 434 - eva3dm-1.20/eva3dm/R/templates.R | 5053 ++++++++-------- eva3dm-1.20/eva3dm/R/vars.R | 72 eva3dm-1.20/eva3dm/R/wind_conv.R | 224 eva3dm-1.20/eva3dm/R/wrf_rast.R | 538 - eva3dm-1.20/eva3dm/R/wrf_sds.R |only eva3dm-1.20/eva3dm/R/yearly.R |only eva3dm-1.20/eva3dm/build/vignette.rds |binary eva3dm-1.20/eva3dm/inst/CITATION | 28 eva3dm-1.20/eva3dm/inst/doc/intro.R |only eva3dm-1.20/eva3dm/inst/doc/intro.Rmd |only eva3dm-1.20/eva3dm/inst/doc/intro.html |only eva3dm-1.20/eva3dm/inst/doc/satellite.R |only eva3dm-1.20/eva3dm/inst/doc/satellite.Rmd |only eva3dm-1.20/eva3dm/inst/doc/satellite.html |only eva3dm-1.20/eva3dm/inst/extdata/TEMPO_crop_Boston.nc |only eva3dm-1.20/eva3dm/inst/extdata/sample.csv | 8 eva3dm-1.20/eva3dm/inst/extdata/sample.txt | 8 eva3dm-1.20/eva3dm/inst/extdata/sat_cat.csv | 4 eva3dm-1.20/eva3dm/inst/extdata/sat_cat.txt | 4 eva3dm-1.20/eva3dm/inst/extdata/sites_AQS.Rds |only eva3dm-1.20/eva3dm/inst/extdata/sites_CASTNET.Rds |only eva3dm-1.20/eva3dm/inst/extdata/sites_EMEP.Rds |only eva3dm-1.20/eva3dm/inst/extdata/sites_FLUXNET.Rds |only eva3dm-1.20/eva3dm/inst/extdata/sites_IMPROVE.Rds |only eva3dm-1.20/eva3dm/inst/extdata/sites_TOAR.Rds |only eva3dm-1.20/eva3dm/inst/extdata/wrf_4d_o3_Boston.nc |only eva3dm-1.20/eva3dm/inst/extdata/wrf_column_o3_Boston.nc |only eva3dm-1.20/eva3dm/man/atr.Rd | 82 eva3dm-1.20/eva3dm/man/calculate_column.Rd |only eva3dm-1.20/eva3dm/man/cate.Rd | 147 eva3dm-1.20/eva3dm/man/daily.Rd | 121 eva3dm-1.20/eva3dm/man/eva.Rd | 257 eva3dm-1.20/eva3dm/man/eva3dm-package.Rd | 50 eva3dm-1.20/eva3dm/man/extract_max_8h.Rd | 104 eva3dm-1.20/eva3dm/man/extract_mean.Rd | 100 eva3dm-1.20/eva3dm/man/extract_serie.Rd | 223 eva3dm-1.20/eva3dm/man/extract_surgical.Rd |only eva3dm-1.20/eva3dm/man/get_distances.Rd | 54 eva3dm-1.20/eva3dm/man/grapes-IN-grapes.Rd | 124 eva3dm-1.20/eva3dm/man/grapes-at-grapes.Rd | 84 eva3dm-1.20/eva3dm/man/hourly.Rd | 119 eva3dm-1.20/eva3dm/man/interp.Rd | 76 eva3dm-1.20/eva3dm/man/legend_range.Rd | 132 eva3dm-1.20/eva3dm/man/ma8h.Rd | 84 eva3dm-1.20/eva3dm/man/mda8.Rd | 84 eva3dm-1.20/eva3dm/man/monthly.Rd |only eva3dm-1.20/eva3dm/man/ncdump.Rd | 44 eva3dm-1.20/eva3dm/man/overlay.Rd | 169 eva3dm-1.20/eva3dm/man/plot_diff.Rd | 113 eva3dm-1.20/eva3dm/man/plot_rast.Rd | 194 eva3dm-1.20/eva3dm/man/q2rh.Rd | 98 eva3dm-1.20/eva3dm/man/rain.Rd | 58 eva3dm-1.20/eva3dm/man/rast_to_netcdf.Rd | 76 eva3dm-1.20/eva3dm/man/read_stat.Rd | 66 eva3dm-1.20/eva3dm/man/rh2q.Rd | 88 eva3dm-1.20/eva3dm/man/sat.Rd | 176 eva3dm-1.20/eva3dm/man/select.Rd | 3 eva3dm-1.20/eva3dm/man/stat.Rd | 144 eva3dm-1.20/eva3dm/man/template.Rd | 127 eva3dm-1.20/eva3dm/man/uv2wd.Rd | 102 eva3dm-1.20/eva3dm/man/uv2ws.Rd | 104 eva3dm-1.20/eva3dm/man/vars.Rd | 50 eva3dm-1.20/eva3dm/man/wrf_rast.Rd | 126 eva3dm-1.20/eva3dm/man/wrf_sds.Rd |only eva3dm-1.20/eva3dm/man/write_stat.Rd | 86 eva3dm-1.20/eva3dm/man/yearly.Rd |only eva3dm-1.20/eva3dm/tests/testthat.R | 24 eva3dm-1.20/eva3dm/tests/testthat/test-conversion.R | 118 eva3dm-1.20/eva3dm/tests/testthat/test-eva-stat-in.R | 188 eva3dm-1.20/eva3dm/tests/testthat/test-extraction.R | 114 eva3dm-1.20/eva3dm/tests/testthat/test-rast.R | 80 eva3dm-1.20/eva3dm/tests/testthat/test-sat-cate-io.R | 78 eva3dm-1.20/eva3dm/tests/testthat/test-select.R | 26 eva3dm-1.20/eva3dm/tests/testthat/test-templates.R | 45 eva3dm-1.20/eva3dm/tests/testthat/test-time-series.R | 33 eva3dm-1.20/eva3dm/tests/testthat/test-utils.R | 48 eva3dm-1.20/eva3dm/vignettes/intro.Rmd |only eva3dm-1.20/eva3dm/vignettes/satellite.Rmd |only 116 files changed, 9275 insertions(+), 8798 deletions(-)
Title: Diagnostic Tool by Multiple Imputation for Regression
Discontinuity Designs
Description: Estimates average treatment effects at the cutoff based on sharp
regression discontinuity designs (RDD) and multiple imputation regression
discontinuity designs (MIRDD). It provides diagnostic tools for RDD by
comparing results with those from MIRDD, as proposed in Takahashi (2023)
<doi:10.1080/03610918.2021.1960374>. The package includes datasets from
Takahashi (2023).
Author: Masayoshi Takahashi [aut, cre]
Maintainer: Masayoshi Takahashi <mtakahashi615@g.chuo-u.ac.jp>
Diff between MIRDD versions 0.1.0 dated 2026-03-19 and 0.2.2 dated 2026-04-21
DESCRIPTION | 34 +-- MD5 | 14 + R/MIRDD-package.R |only R/MIRDD.R | 434 ++++++++++++++++++++++------------------ R/data.R |only build |only data |only man/LudwigMiller2007Modified.Rd |only man/MIRDD-package.Rd |only man/MIdiagRDD.Rd | 67 ++++-- man/lee2008.Rd |only 11 files changed, 329 insertions(+), 220 deletions(-)
Title: Motif Discovery in Functional Data
Description: Efficiently implementing two complementary methodologies for discovering motifs in functional data: ProbKMA and FunBIalign.
Cremona and Chiaromonte (2023) "Probabilistic K-means with Local Alignment for Clustering and Motif Discovery in Functional Data" <doi:10.1080/10618600.2022.2156522> is a probabilistic K-means algorithm that leverages local alignment and fuzzy clustering to identify recurring patterns (candidate functional motifs) across and within curves, allowing different portions of the same curve to belong to different clusters. It includes a family of distances and a normalization to discover various motif types and learns motif lengths in a data-driven manner. It can also be used for local clustering of misaligned data.
Di Iorio, Cremona, and Chiaromonte (2023) "funBIalign: A Hierarchical Algorithm for Functional Motif Discovery Based on Mean Squared Residue Scores" <doi:10.48550/arXiv.2306.04254> applies hierarchical agglomerative clustering with a functional g [...truncated...]
Author: Marzia Angela Cremona [aut],
Francesca Chiaromonte [aut],
Jacopo Di Iorio [aut, cre],
Niccolo Feresini [aut],
Riccardo Lazzarini [aut]
Maintainer: Jacopo Di Iorio <jacopo.di.iorio@emory.edu>
Diff between funMoDisco versions 1.1.0 dated 2025-11-07 and 1.1.5 dated 2026-04-21
DESCRIPTION | 12 MD5 | 26 - NAMESPACE | 1 R/S4_constructor.R | 27 - R/S4_methods.R | 42 - R/discoverMotifs.R | 109 ++-- R/find_recommended_path.R | 2 R/funMoDisco-pkg.R | 1 R/motifs_search_plot.R | 909 +++++++++++++++++++++++++++----------- R/probKMA_silhouette_plot.R | 1 inst/doc/funMoDisco_vignette.pdf |binary man/discoverMotifs.Rd | 93 +-- man/motifs_search_plot.Rd | 8 vignettes/funMoDisco_vignette.Rmd | 29 - 14 files changed, 840 insertions(+), 420 deletions(-)
Title: Simulating Nonhomogeneous Poisson Point Processes
Description: Simulates events from one dimensional nonhomogeneous Poisson point processes (NHPPPs) as per Trikalinos and Sereda (2024, <doi:10.48550/arXiv.2402.00358> and 2024, <doi:10.1371/journal.pone.0311311>). Functions are based on three algorithms that provably sample from a target NHPPP: the time-transformation of a homogeneous Poisson process (of intensity one) via the inverse of the integrated intensity function (Cinlar E, "Theory of stochastic processes" (1975, ISBN:0486497996)); the generation of a Poisson number of order statistics from a fixed density function; and the thinning of a majorizing NHPPP via an acceptance-rejection scheme (Lewis PAW, Shedler, GS (1979) <doi:10.1002/nav.3800260304>).
Author: Thomas Trikalinos [aut, cre, cph] ,
Yuliia Sereda [aut]
Maintainer: Thomas Trikalinos <thomas_trikalinos@brown.edu>
Diff between nhppp versions 1.0.2 dated 2025-01-09 and 1.0.5 dated 2026-04-21
DESCRIPTION | 18 +++--- MD5 | 42 +++++++++------ NEWS.md | 8 ++ R/vdraw.R | 12 +++- R/vdraw_cumulative_intensity.R | 8 ++ R/vdraw_intensity.R | 4 + R/vdraw_intensity_step_regular_cpp.R | 10 +++ R/vdraw_intensity_step_regular_forcezt.R | 13 ++++ R/vdraw_sc_step_regular_cpp.R | 6 ++ R/vztdraw_intensity.R | 4 + R/vztdraw_intensity_step_regular.R | 16 +++++ R/vztdraw_sc_step_regular_cpp.R | 5 + build/vignette.rds |binary inst/doc/Gompertz_processes.R |only inst/doc/Gompertz_processes.Rmd |only inst/doc/Gompertz_processes.html |only inst/doc/Log_linear_times.html | 30 +++++------ inst/doc/Simple_des_model_cancer_natural_Hx.html | 7 +- inst/doc/Weibull_processes.R |only inst/doc/Weibull_processes.Rmd |only inst/doc/Weibull_processes.html |only tests/testthat/test-vdraw_sc_step_regular.R | 24 ++++++++ tests/testthat/test-vdraw_sc_step_regular_cpp.R | 27 ++++++++++ tests/testthat/test-vztdraw_intensity_step_regular.R | 51 ++++++++++++++++++- vignettes/Gompertz_processes.Rmd |only vignettes/Weibull_processes.Rmd |only 26 files changed, 230 insertions(+), 55 deletions(-)
Title: Extra Functionality for the 'xpose' Package
Description: Adding some at-present missing functionality, or functions
unlikely to be added to the base 'xpose' package. This includes some
diagnostic plots that have been missing in translation from 'xpose4',
but also some useful features that truly extend the capabilities of what
can be done with 'xpose'. These extensions include the concept of a set of
'xpose' objects, and diagnostics for likelihood-based models.
Author: John Prybylski [aut, cre, cph]
Maintainer: John Prybylski <jprybylski@gmail.com>
Diff between xpose.xtras versions 0.1.3 dated 2026-04-18 and 0.1.4 dated 2026-04-21
xpose.xtras-0.1.3/xpose.xtras/data/nlmixr2_m3.rda |only xpose.xtras-0.1.3/xpose.xtras/data/nlmixr2_warfarin.rda |only xpose.xtras-0.1.3/xpose.xtras/data/xpdb_nlmixr2.rda |only xpose.xtras-0.1.3/xpose.xtras/data/xpdb_nlmixr2_old.rda |only xpose.xtras-0.1.3/xpose.xtras/data/xpdb_nlmixr2_saem.rda |only xpose.xtras-0.1.3/xpose.xtras/man/nlmixr2_m3.Rd |only xpose.xtras-0.1.3/xpose.xtras/man/nlmixr2_warfarin.Rd |only xpose.xtras-0.1.3/xpose.xtras/man/xpdb_nlmixr2.Rd |only xpose.xtras-0.1.3/xpose.xtras/man/xpdb_nlmixr2_old.Rd |only xpose.xtras-0.1.4/xpose.xtras/DESCRIPTION | 6 xpose.xtras-0.1.4/xpose.xtras/MD5 | 79 +++--- xpose.xtras-0.1.4/xpose.xtras/NAMESPACE | 2 xpose.xtras-0.1.4/xpose.xtras/NEWS.md | 4 xpose.xtras-0.1.4/xpose.xtras/R/data.R | 120 ---------- xpose.xtras-0.1.4/xpose.xtras/R/diag_constants.R | 11 xpose.xtras-0.1.4/xpose.xtras/R/nlmixr2.R | 63 ++--- xpose.xtras-0.1.4/xpose.xtras/R/nlmixr_examples.R |only xpose.xtras-0.1.4/xpose.xtras/R/xset_diagram.R | 3 xpose.xtras-0.1.4/xpose.xtras/R/zzz.R | 7 xpose.xtras-0.1.4/xpose.xtras/data/pheno_base.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/pheno_final.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/pheno_saem.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/pheno_set.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/pkpd_m3.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/vismo_dtmm.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/vismo_pomod.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/xpdb_set.rda |binary xpose.xtras-0.1.4/xpose.xtras/data/xpdb_x.rda |binary xpose.xtras-0.1.4/xpose.xtras/inst/doc/a02-xpose-sets.R | 16 - xpose.xtras-0.1.4/xpose.xtras/inst/doc/a02-xpose-sets.Rmd | 16 - xpose.xtras-0.1.4/xpose.xtras/inst/doc/a02-xpose-sets.html | 30 +- xpose.xtras-0.1.4/xpose.xtras/inst/doc/a03-useful_plots.html | 2 xpose.xtras-0.1.4/xpose.xtras/man/attach_nlmixr2.Rd | 49 ++-- xpose.xtras-0.1.4/xpose.xtras/man/backfill_nlmixr2_props.Rd | 5 xpose.xtras-0.1.4/xpose.xtras/man/derive_prm.Rd | 5 xpose.xtras-0.1.4/xpose.xtras/man/diagnose_constants.Rd | 6 xpose.xtras-0.1.4/xpose.xtras/man/diagram_lineage.Rd | 3 xpose.xtras-0.1.4/xpose.xtras/man/figures/README-m3_roc-1.png |binary xpose.xtras-0.1.4/xpose.xtras/man/nlmixr2_prm_associations.Rd | 5 xpose.xtras-0.1.4/xpose.xtras/man/nlmixr_example.Rd |only xpose.xtras-0.1.4/xpose.xtras/tests/testthat/helper-nlmixr2_examples.R |only xpose.xtras-0.1.4/xpose.xtras/tests/testthat/test-diag_constants.R | 8 xpose.xtras-0.1.4/xpose.xtras/tests/testthat/test-nlmixr2.R | 13 - xpose.xtras-0.1.4/xpose.xtras/tests/testthat/test-utils.R | 8 xpose.xtras-0.1.4/xpose.xtras/tests/testthat/test-xset_diagram.R | 1 xpose.xtras-0.1.4/xpose.xtras/tests/testthat/testdata |only xpose.xtras-0.1.4/xpose.xtras/vignettes/a02-xpose-sets.Rmd | 16 - 47 files changed, 187 insertions(+), 291 deletions(-)
Title: Taxonomic Distance and Phylogenetic Lineage Computation
Description: Computes phylogenetic distances between any two taxa using
hierarchical lineage data retrieved from The Taxonomicon
<http://taxonomicon.taxonomy.nl>, a comprehensive curated classification
of all life based on Systema Naturae 2000 (Brands, 1989
<http://taxonomicon.taxonomy.nl>). Given any two taxon names, retrieves their
full lineages, identifies the most recent common ancestor (MRCA),
and computes a dissimilarity index based on lineage depth. Outputs
native dist objects, enabling direct integration with the R statistical
ecosystem for hierarchical clustering, principal coordinate analysis (PCoA),
and multivariate ecological analyses. Supports individual distance queries,
pairwise distance matrices, clade filtering, and lineage utilities.
Author: Rodrigo Fonseca Villa [aut, cre]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>
Diff between taxodist versions 0.1.0 dated 2026-03-23 and 0.2.0 dated 2026-04-21
DESCRIPTION | 25 +-- MD5 | 42 +++-- NAMESPACE | 10 + NEWS.md | 35 ++++ R/distance.R | 69 ++++++++ R/fetch.R | 58 ++++++- R/utils.R | 221 +++++++++++++++++++++++++++ README.md | 17 +- build/vignette.rds |binary inst/WORDLIST | 39 +++- inst/doc/introduction.R | 57 +++++-- inst/doc/introduction.Rmd | 83 ++++++++-- inst/doc/introduction.html | 208 +++++++++++++++---------- inst/doc/statistical-applications.R |only inst/doc/statistical-applications.Rmd |only inst/doc/statistical-applications.html |only man/load_cache.Rd |only man/plot.taxodist_cluster.Rd |only man/plot.taxodist_ord.Rd |only man/print.taxodist_path.Rd |only man/save_cache.Rd |only man/summary.taxodist_ord.Rd |only man/taxo_cluster.Rd |only man/taxo_heatmap.Rd |only man/taxo_ordinate.Rd |only man/taxo_path.Rd |only tests/testthat/test-distance.R | 266 +++++++++++++++++++++++++++++++++ vignettes/introduction.Rmd | 83 ++++++++-- vignettes/statistical-applications.Rmd |only 29 files changed, 1048 insertions(+), 165 deletions(-)
Title: Discover Probable Duplicates in Plant Genetic Resources
Collections
Description: Provides functions to aid the identification of probable/possible
duplicates in Plant Genetic Resources (PGR) collections using
'passport databases' comprising of information records of each constituent
sample. These include methods for cleaning the data, creation of a
searchable Key Word in Context (KWIC) index of keywords associated with
sample records and the identification of nearly identical records with
similar information by fuzzy, phonetic and semantic matching of keywords.
Author: J. Aravind [aut, cre] ,
J. Radhamani [aut],
Kalyani Srinivasan [aut],
B. Ananda Subhash [aut],
Rishi Kumar Tyagi [aut],
ICAR-NBGPR [cph] ,
Maurice Aubrey [ctb] ,
Kevin Atkinson [ctb] ,
Lawrence Philips [ctb]
Maintainer: J. Aravind <j.aravind@icar.org.in>
Diff between PGRdup versions 0.2.4.0 dated 2025-12-14 and 0.3.0 dated 2026-04-21
DESCRIPTION | 16 - MD5 | 56 ++--- NEWS.md | 10 + R/AddProbDup.R | 2 R/DataClean.R | 2 R/DisProbDup.R | 2 R/DoubleMetaphone.R | 2 R/GN1000.R | 2 R/KWCounts.R | 2 R/KWIC.R | 2 R/MergeKW.R | 2 R/MergeProbDup.R | 2 R/PGRdup-package.R | 2 R/ParseProbDup.R | 2 R/ProbDup.R | 448 +++++++++++++++++++++++++++++----------------- R/ReconstructProbDup.R | 2 R/ReviewProbDup.R | 2 R/SplitProbDup.R | 2 R/ValidatePrimKey.R | 2 R/ViewProbDup.R | 2 R/globals.R | 5 R/print.KWIC.R | 2 R/print.ProbDup.R | 2 R/read.genesys.R | 2 R/xtra.R | 2 README.md | 22 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/Introduction.pdf |binary 29 files changed, 365 insertions(+), 232 deletions(-)
Title: Marginalized Count Regression Models
Description: Implementation of marginalized models for zero-inflated count data. The package provides tools to estimate marginalized count regression models for direct inference on the effect of covariates on the marginal mean of the outcome. The methods include the marginalized zero-inflated Poisson (MZIP) model described in Long et al. (2014) <doi:10.1002/sim.6293> and the marginalized zero- and N-inflated binomial (MZNIB) model, which extends marginalized modeling to fractional count outcomes with boundary inflation at zero and the upper limit.
Author: Zhengyang Zhou [aut, cre],
Dateng Li [aut],
David Huh [aut],
Minge Xie [aut],
Eun-Young Mun [aut]
Maintainer: Zhengyang Zhou <zhengyang.zhou@unthsc.edu>
Diff between mcount versions 1.0.0 dated 2022-03-11 and 1.0.1 dated 2026-04-21
mcount-1.0.0/mcount/R/data_example_documentation.R |only mcount-1.0.0/mcount/data/dat.pfi.RData |only mcount-1.0.1/mcount/DESCRIPTION | 37 mcount-1.0.1/mcount/MD5 | 26 mcount-1.0.1/mcount/NAMESPACE | 5 mcount-1.0.1/mcount/R/data-dat.pal.R |only mcount-1.0.1/mcount/R/data-dat.pfi.R |only mcount-1.0.1/mcount/R/main.R | 539 +++++++++++++- mcount-1.0.1/mcount/build |only mcount-1.0.1/mcount/data/dat.pal.rda |only mcount-1.0.1/mcount/data/dat.pfi.rda |only mcount-1.0.1/mcount/man/dat.pal.Rd |only mcount-1.0.1/mcount/man/dat.pfi.Rd | 51 - mcount-1.0.1/mcount/man/mzip.Rd | 13 mcount-1.0.1/mcount/man/mznib.Rd |only mcount-1.0.1/mcount/man/mznib_work_generic.Rd |only mcount-1.0.1/mcount/man/obtain_score_functions_generic.Rd |only mcount-1.0.1/mcount/man/print.mzip.Rd |only mcount-1.0.1/mcount/man/print.summary.mznib.Rd |only mcount-1.0.1/mcount/man/summary.mzip.Rd |only mcount-1.0.1/mcount/man/summary.mznib.Rd |only mcount-1.0.1/mcount/man/znib_generic.Rd |only 22 files changed, 630 insertions(+), 41 deletions(-)
Title: Package for Sequence Analysis by Local Score
Description: Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (D. Robelin, S. Déjean, S. Mercier (2025) <doi:10.24072/pcjournal.650> ; S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).
Author: Sebastian Simon [aut],
Chris Verschelden [aut],
Charly Marty [aut],
David Robelin [aut, cre],
Sabine Mercier [aut],
Sebastien Dejean [aut],
The authors of Eigen the library for the included version of Eigen
[cph]
Maintainer: David Robelin <david.robelin@inrae.fr>
Diff between localScore versions 2.0.3 dated 2025-04-24 and 2.0.5 dated 2026-04-21
DESCRIPTION | 12 +- MD5 | 35 +++---- R/RcppExports.R | 3 R/data.R | 3 build/vignette.rds |binary inst/CITATION |only inst/doc/ExcursionsheightDocumentation.R | 74 ++++++++++++--- inst/doc/ExcursionsheightDocumentation.Rmd | 87 +++++++++++++++--- inst/doc/ExcursionsheightDocumentation.pdf |binary inst/doc/localScorePackageDocumentation.R | 110 ++++++++++++++--------- inst/doc/localScorePackageDocumentation.Rmd | 127 +++++++++++++++++---------- inst/doc/localScorePackageDocumentation.pdf |binary man/SJSyndrome.Rd | 3 man/daudin.Rd | 3 src/function_wrapper.cpp | 71 ++++++++------- src/localScoreC.cpp | 2 src/pValueMethods.cpp | 5 - vignettes/ExcursionsheightDocumentation.Rmd | 87 +++++++++++++++--- vignettes/localScorePackageDocumentation.Rmd | 127 +++++++++++++++++---------- 19 files changed, 515 insertions(+), 234 deletions(-)
Title: Introduction to Sports Analytics using R (ISAR) Data
Description: We provide data sets used in the textbook "Introduction to Sports Analytics using R" by Elmore and Urbaczweski (2025).
Author: Ryan Elmore [cre, aut]
Maintainer: Ryan Elmore <Ryan.Elmore@du.edu>
Diff between ISAR versions 1.0.3 dated 2026-03-26 and 1.0.5 dated 2026-04-21
DESCRIPTION | 6 +++--- MD5 | 12 +++++++++--- R/draftkings-bos-buf.R |only R/draftkings-edm-col.R | 2 +- R/masters_2025.R |only data/dk_bos_buf.rda |only data/masters_2025.rda |only man/dk_bos_buf.Rd |only man/dk_edm_col.Rd | 2 +- man/masters_2025.Rd |only 10 files changed, 14 insertions(+), 8 deletions(-)
Title: Seed Germination Indices and Curve Fitting
Description: Provides functions to compute various germination indices
such as germinability, median germination time, mean germination time,
mean germination rate, speed of germination, Timson's index,
germination value, coefficient of uniformity of germination,
uncertainty of germination process, synchrony of germination etc. from
germination count data. Includes functions for fitting cumulative seed
germination curves using four-parameter hill function and computation
of associated parameters. See the vignette for more, including full
list of citations for the methods implemented.
Author: J. Aravind [aut, cre] ,
S. Vimala Devi [aut],
J. Radhamani [aut],
Sherry Rachel Jacob [aut],
Kalyani Srinivasan [aut],
ICAR-NBGPR [cph]
Maintainer: J. Aravind <j.aravind@icar.org.in>
Diff between germinationmetrics versions 0.1.9 dated 2025-12-14 and 0.1.10 dated 2026-04-21
DESCRIPTION | 10 +++--- MD5 | 72 ++++++++++++++++++++++----------------------- NEWS.md | 9 +++++ R/CUGerm.R | 2 - R/EmergenceRateIndex.R | 2 - R/FirstGermTime.R | 2 - R/FourPHFfit.R | 8 ++--- R/FourPHFfit.bulk.R | 2 - R/GermIndex.R | 2 - R/GermPercent.R | 2 - R/GermSpeed.R | 2 - R/GermSynchrony.R | 2 - R/GermValue.R | 2 - R/MeanGermPercent.R | 2 - R/MeanGermRate.R | 2 - R/MeanGermTime.R | 2 - R/TimsonsIndex.R | 2 - R/WeightGermPercent.R | 2 - R/gcdata.R | 2 - R/geom_line2.R | 2 - R/germination.indices.R | 2 - R/globals.R | 2 - R/plot.FourPHFfit.R | 2 - R/plot.FourPHFfit.bulk.R | 2 - R/t50.R | 11 +++--- R/xtra.R | 2 - README.md | 19 ++++++----- build/partial.rdb |binary build/stage23.rdb |binary build/vignette.rds |binary inst/doc/Introduction.Rmd | 66 ++++++++++++++++++++++++++--------------- inst/doc/Introduction.pdf |binary man/FourPHFfit.Rd | 6 +-- man/FourPHFfit.bulk.Rd | 6 +-- man/t50.Rd | 9 +++-- vignettes/Indices.rda |binary vignettes/Introduction.Rmd | 66 ++++++++++++++++++++++++++--------------- 37 files changed, 188 insertions(+), 136 deletions(-)
More information about germinationmetrics at CRAN
Permanent link
Title: An Interface to 'SUNDIALS' Ordinary Differential Equation (ODE)
Solvers
Description: Provides a way to call the functions in 'SUNDIALS' C ODE solving library (<https://computing.llnl.gov/projects/sundials>). Currently the serial version of ODE solver, 'CVODE', sensitivity calculator 'CVODES' and differential algebraic solver 'IDA' from the 'SUNDIALS' library are implemented. The package requires ODE to be written as an 'R' or 'Rcpp' function and does not require the 'SUNDIALS' library to be installed on the local machine.
Author: Satyaprakash Nayak [aut, cre, cph] ,
Lawrence Livermore National Security [cph],
Southern Methodist University [cph]
Maintainer: Satyaprakash Nayak <satyaprakash.nayak@gmail.com>
This is a re-admission after prior archival of version 0.1.6.2 dated 2025-01-13
Diff between sundialr versions 0.1.6.2 dated 2025-01-13 and 0.1.7 dated 2026-04-21
sundialr-0.1.6.2/sundialr/NEWS |only sundialr-0.1.6.2/sundialr/src/sundials-mod-7.2.1.tar.gz |only sundialr-0.1.7/sundialr/DESCRIPTION | 14 sundialr-0.1.7/sundialr/MD5 | 244 +++--- sundialr-0.1.7/sundialr/NEWS.md |only sundialr-0.1.7/sundialr/README.md | 4 sundialr-0.1.7/sundialr/build/vignette.rds |binary sundialr-0.1.7/sundialr/cleanup | 3 sundialr-0.1.7/sundialr/configure.ac | 10 sundialr-0.1.7/sundialr/inst/doc/my-vignette.html | 11 sundialr-0.1.7/sundialr/inst/include/arkode/arkode.h | 79 +- sundialr-0.1.7/sundialr/inst/include/arkode/arkode.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_arkstep.h | 389 ---------- sundialr-0.1.7/sundialr/inst/include/arkode/arkode_arkstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_arkstep_deprecated.h |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_bandpre.h | 14 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_butcher.h | 25 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_butcher_dirk.h | 24 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_butcher_erk.h | 28 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_erkstep.h | 208 ----- sundialr-0.1.7/sundialr/inst/include/arkode/arkode_erkstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_erkstep_deprecated.h |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_forcingstep.h | 5 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_forcingstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_ls.h | 7 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_lsrkstep.h | 30 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_lsrkstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_mristep.h | 242 ------ sundialr-0.1.7/sundialr/inst/include/arkode/arkode_mristep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_mristep_deprecated.h |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_splittingstep.h | 26 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_splittingstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_sprk.h | 29 sundialr-0.1.7/sundialr/inst/include/arkode/arkode_sprkstep.h | 83 -- sundialr-0.1.7/sundialr/inst/include/arkode/arkode_sprkstep.hpp |only sundialr-0.1.7/sundialr/inst/include/arkode/arkode_sprkstep_deprecated.h |only sundialr-0.1.7/sundialr/inst/include/cvode/cvode.h | 46 - sundialr-0.1.7/sundialr/inst/include/cvode/cvode.hpp |only sundialr-0.1.7/sundialr/inst/include/cvode/cvode_bandpre.h | 12 sundialr-0.1.7/sundialr/inst/include/cvode/cvode_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/cvode/cvode_diag.h | 10 sundialr-0.1.7/sundialr/inst/include/cvode/cvode_ls.h | 15 sundialr-0.1.7/sundialr/inst/include/cvode/cvode_proj.h | 5 sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes.h | 130 ++- sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes.hpp |only sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes_bandpre.h | 12 sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes_diag.h | 10 sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes_ls.h | 40 - sundialr-0.1.7/sundialr/inst/include/cvodes/cvodes_proj.h | 5 sundialr-0.1.7/sundialr/inst/include/ida/ida.h | 52 + sundialr-0.1.7/sundialr/inst/include/ida/ida.hpp |only sundialr-0.1.7/sundialr/inst/include/ida/ida_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/ida/ida_ls.h | 15 sundialr-0.1.7/sundialr/inst/include/idas/idas.h | 148 ++- sundialr-0.1.7/sundialr/inst/include/idas/idas.hpp |only sundialr-0.1.7/sundialr/inst/include/idas/idas_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/idas/idas_ls.h | 40 - sundialr-0.1.7/sundialr/inst/include/kinsol/kinsol.h | 40 - sundialr-0.1.7/sundialr/inst/include/kinsol/kinsol.hpp |only sundialr-0.1.7/sundialr/inst/include/kinsol/kinsol_bbdpre.h | 13 sundialr-0.1.7/sundialr/inst/include/kinsol/kinsol_ls.h | 17 sundialr-0.1.7/sundialr/inst/include/nvector/nvector_manyvector.h | 18 sundialr-0.1.7/sundialr/inst/include/nvector/nvector_serial.h | 10 sundialr-0.1.7/sundialr/inst/include/sunadaptcontroller/sunadaptcontroller_imexgus.h | 20 sundialr-0.1.7/sundialr/inst/include/sunadaptcontroller/sunadaptcontroller_mrihtol.h | 31 sundialr-0.1.7/sundialr/inst/include/sunadaptcontroller/sunadaptcontroller_soderlind.h | 27 sundialr-0.1.7/sundialr/inst/include/sunadjointcheckpointscheme |only sundialr-0.1.7/sundialr/inst/include/sundials/LICENSE | 4 sundialr-0.1.7/sundialr/inst/include/sundials/priv/sundials_context_impl.h | 6 sundialr-0.1.7/sundialr/inst/include/sundials/priv/sundials_errors_impl.h | 18 sundialr-0.1.7/sundialr/inst/include/sundials/priv/sundials_logger_macros.h |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adaptcontroller.h | 26 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adaptcontroller.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adjointcheckpointscheme.h |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adjointcheckpointscheme.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adjointstepper.h |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_adjointstepper.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_band.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_base.hpp | 45 - sundialr-0.1.7/sundialr/inst/include/sundials/sundials_classview.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_config.h | 27 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_context.h | 11 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_context.hpp | 54 - sundialr-0.1.7/sundialr/inst/include/sundials/sundials_convertibleto.hpp | 23 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_core.h | 9 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_core.hpp | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_dense.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_direct.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_domeigestimator.h |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_domeigestimator.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_errors.h | 21 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_futils.h | 24 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_iterative.h | 47 - sundialr-0.1.7/sundialr/inst/include/sundials/sundials_linearsolver.h | 48 - sundialr-0.1.7/sundialr/inst/include/sundials/sundials_linearsolver.hpp | 15 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_logger.h | 14 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_logger.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_math.h | 100 ++ sundialr-0.1.7/sundialr/inst/include/sundials/sundials_matrix.h | 21 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_matrix.hpp | 14 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_memory.h | 31 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_memory.hpp | 14 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_mpi_types.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_nonlinearsolver.h | 32 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_nonlinearsolver.hpp | 9 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_nvector.h | 70 + sundialr-0.1.7/sundialr/inst/include/sundials/sundials_nvector.hpp | 19 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_profiler.h | 6 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_profiler.hpp | 17 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_stepper.h | 51 + sundialr-0.1.7/sundialr/inst/include/sundials/sundials_stepper.hpp |only sundialr-0.1.7/sundialr/inst/include/sundials/sundials_types.h | 63 + sundialr-0.1.7/sundialr/inst/include/sundials/sundials_types_deprecated.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials/sundials_version.h | 5 sundialr-0.1.7/sundialr/inst/include/sundials_err_handler.h |only sundialr-0.1.7/sundialr/inst/include/sundomeigest |only sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_band.h | 10 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_dense.h | 10 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_pcg.h | 10 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_spbcgs.h | 14 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_spfgmr.h | 16 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_spgmr.h | 14 sundialr-0.1.7/sundialr/inst/include/sunlinsol/sunlinsol_sptfqmr.h | 14 sundialr-0.1.7/sundialr/inst/include/sunmatrix/sunmatrix_band.h | 15 sundialr-0.1.7/sundialr/inst/include/sunmatrix/sunmatrix_dense.h | 15 sundialr-0.1.7/sundialr/inst/include/sunmatrix/sunmatrix_sparse.h | 19 sundialr-0.1.7/sundialr/inst/include/sunmemory/sunmemory_system.h | 11 sundialr-0.1.7/sundialr/inst/include/sunnonlinsol/sunnonlinsol_fixedpoint.h | 7 sundialr-0.1.7/sundialr/inst/include/sunnonlinsol/sunnonlinsol_newton.h | 5 sundialr-0.1.7/sundialr/src/Makevars.in | 2 sundialr-0.1.7/sundialr/src/cvode.cpp | 4 sundialr-0.1.7/sundialr/src/cvodes.cpp | 4 sundialr-0.1.7/sundialr/src/cvsolve.cpp | 4 sundialr-0.1.7/sundialr/src/ida.cpp | 5 sundialr-0.1.7/sundialr/src/scripts/sundials_download.sh | 4 sundialr-0.1.7/sundialr/src/sundials-mod-7.6.0.tar.gz |only sundialr-0.1.7/sundialr/tools/cmake_call.sh | 116 ++ sundialr-0.1.7/sundialr/tools/remove_static_libs.sh |only 140 files changed, 1850 insertions(+), 1579 deletions(-)
Title: Ordinal Data Clustering, Co-Clustering and Classification
Description: Ordinal data classification, clustering and co-clustering using model-based approach with the BOS (Binary Ordinal Search) distribution for ordinal data (Christophe Biernacki and Julien Jacques (2016) <doi:10.1007/s11222-015-9585-2>).
Author: Margot Selosse [aut],
Julien Jacques [aut, cre],
Christophe Biernacki [aut]
Maintainer: Julien Jacques <julien.jacques@univ-lyon2.fr>
This is a re-admission after prior archival of version 1.3.5 dated 2020-11-19
Diff between ordinalClust versions 1.3.5 dated 2020-11-19 and 1.3.5.1 dated 2026-04-21
DESCRIPTION | 27 MD5 | 30 - R/bosplot.R | 7 build/vignette.rds |binary inst/doc/ordinalClust.R | 480 ++++++++-------- inst/doc/ordinalClust.html | 1198 ++++++++++++++++++++++++----------------- man/bosclassif.Rd | 58 - man/bosclust.Rd | 43 - man/boscoclust.Rd | 52 - man/pejSim.Rd | 28 src/Bos.cpp | 97 ++- src/ClassificationMContext.cpp | 14 src/ClusteringContext.cpp | 24 src/Makevars | 9 src/ordinalClust.cpp | 83 ++ vignettes/bibliography.bib | 12 16 files changed, 1189 insertions(+), 973 deletions(-)
Title: Dose Response Curve Fitting and Mixture Toxicity Assessment
Description: Curve Fitting of monotonic(sigmoidal) & non-monotonic(J-shaped)
dose-response data. Predicting mixture toxicity based on reference
models such as 'concentration addition', 'independent action', and 'generalized
concentration addition'.
Author: Xiangwei Zhu [aut, cre]
Maintainer: Xiangwei Zhu <xwzhunc@gmail.com>
Diff between mixtox versions 1.4.0 dated 2022-06-20 and 1.5.0 dated 2026-04-21
DESCRIPTION | 18 - MD5 | 103 +++---- NAMESPACE | 16 - R/BMD.R | 296 ++++++++++----------- R/CEx.R | 140 +++++----- R/ECx.R | 187 ++++++------- R/NOEC.R | 258 +++++++++--------- R/caPred.R | 174 ++++++------ R/curveFit.R | 444 +++++++++++++++++-------------- R/ecaPred.R | 202 +++++++------- R/eiaPred.R | 126 ++++----- R/figPlot.R | 92 +++--- R/gcaHill.R | 200 +++++++------- R/gcaPred.R | 361 +++++++++++++------------ R/getCI.R | 330 +++++++++++------------ R/iaPred.R | 248 ++++++++--------- R/jacobian.R | 168 ++++++------ R/nmECx.R | 156 +++++------ R/qq4res.R | 22 - R/readModel.R | 36 +- R/readTox.R | 4 R/showEq.R | 85 +++--- R/tuneFit.R | 528 +++++++++++++++++++------------------ R/unidTab.R | 752 +++++++++++++++++++++++++++--------------------------- README.md |only data/staval.rda |binary man/BMD.Rd | 114 ++++---- man/CEx.Rd | 118 ++++---- man/DTcv.Rd | 66 ++-- man/ECx.Rd | 134 ++++----- man/NOEC.Rd | 148 +++++----- man/antibiotox.Rd | 134 ++++----- man/caPred.Rd | 220 +++++++-------- man/curveFit.Rd | 438 ++++++++++++++++--------------- man/cytotox.Rd | 128 ++++----- man/ecaPred.Rd | 124 ++++---- man/eiaPred.Rd | 166 +++++------ man/figPlot.Rd | 76 ++--- man/gcaHill.Rd | 200 +++++++------- man/gcaPred.Rd | 202 +++++++------- man/getCI.Rd | 88 +++--- man/hormesis.Rd | 110 +++---- man/iaPred.Rd | 230 ++++++++-------- man/jacobian.Rd | 70 ++--- man/mixtox.Rd | 132 ++++----- man/nmECx.Rd | 112 ++++---- man/qq4res.Rd | 66 ++-- man/readModel.Rd | 62 ++-- man/readTox.Rd | 116 ++++---- man/showEq.Rd | 114 ++++---- man/staval.Rd | 69 ++-- man/tuneFit.Rd | 198 +++++++------- man/unidTab.Rd | 172 ++++++------ 53 files changed, 4410 insertions(+), 4343 deletions(-)
More information about bayesiansurpriser at CRAN
Permanent link
Title: Bayesian Tree Ensembles for Survival Analysis and Causal
Inference
Description: Bayesian regression tree ensembles for survival analysis
and causal inference. Implements BART, DART, Bayesian Causal
Forests (BCF), and Horseshoe Forest models. Supports
right-censored and interval-censored survival outcomes via
accelerated failure time (AFT) formulations. Designed for
high-dimensional prediction and heterogeneous treatment effect
estimation.
Author: Tijn Jacobs [aut, cre]
Maintainer: Tijn Jacobs <t.jacobs@vu.nl>
Diff between ShrinkageTrees versions 1.2.0 dated 2026-02-26 and 2.0.2 dated 2026-04-21
ShrinkageTrees-1.2.0/ShrinkageTrees/R/censored_info.R |only ShrinkageTrees-1.2.0/ShrinkageTrees/man/censored_info.Rd |only ShrinkageTrees-1.2.0/ShrinkageTrees/src/Makevars |only ShrinkageTrees-1.2.0/ShrinkageTrees/src/bd.cpp |only ShrinkageTrees-1.2.0/ShrinkageTrees/src/bd.h |only ShrinkageTrees-2.0.2/ShrinkageTrees/DESCRIPTION | 40 ShrinkageTrees-2.0.2/ShrinkageTrees/LICENSE | 3 ShrinkageTrees-2.0.2/ShrinkageTrees/MD5 | 173 +- ShrinkageTrees-2.0.2/ShrinkageTrees/NAMESPACE | 26 ShrinkageTrees-2.0.2/ShrinkageTrees/NEWS.md |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/CausalHorseForest.R | 518 +++++- ShrinkageTrees-2.0.2/ShrinkageTrees/R/CausalShrinkageForest.R | 592 ++++++- ShrinkageTrees-2.0.2/ShrinkageTrees/R/HorseTrees.R | 385 ++++ ShrinkageTrees-2.0.2/ShrinkageTrees/R/RcppExports.R | 8 ShrinkageTrees-2.0.2/ShrinkageTrees/R/ShrinkageTrees-package.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/ShrinkageTrees.R | 411 ++++ ShrinkageTrees-2.0.2/ShrinkageTrees/R/SurvivalWrappers.R | 845 ++++++++-- ShrinkageTrees-2.0.2/ShrinkageTrees/R/bayesian_bootstrap.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/constructors.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/data-documentation.R | 119 + ShrinkageTrees-2.0.2/ShrinkageTrees/R/helpers.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/methods.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/R/plots.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/README.md | 101 - ShrinkageTrees-2.0.2/ShrinkageTrees/build/partial.rdb |binary ShrinkageTrees-2.0.2/ShrinkageTrees/build/vignette.rds |only ShrinkageTrees-2.0.2/ShrinkageTrees/data/ovarian.rda |only ShrinkageTrees-2.0.2/ShrinkageTrees/data/ovarian_truth.rda |only ShrinkageTrees-2.0.2/ShrinkageTrees/demo/00Index | 1 ShrinkageTrees-2.0.2/ShrinkageTrees/demo/pdac_analysis.R | 1 ShrinkageTrees-2.0.2/ShrinkageTrees/inst/CITATION | 6 ShrinkageTrees-2.0.2/ShrinkageTrees/inst/doc |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/CausalHorseForest.Rd | 86 - ShrinkageTrees-2.0.2/ShrinkageTrees/man/CausalShrinkageForest.Rd | 109 + ShrinkageTrees-2.0.2/ShrinkageTrees/man/HorseTrees.Rd | 75 ShrinkageTrees-2.0.2/ShrinkageTrees/man/ShrinkageTrees-package.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/ShrinkageTrees.Rd | 93 - ShrinkageTrees-2.0.2/ShrinkageTrees/man/SurvivalBART.Rd | 102 + ShrinkageTrees-2.0.2/ShrinkageTrees/man/SurvivalBCF.Rd | 121 + ShrinkageTrees-2.0.2/ShrinkageTrees/man/SurvivalDART.Rd | 102 + ShrinkageTrees-2.0.2/ShrinkageTrees/man/SurvivalShrinkageBCF.Rd | 118 + ShrinkageTrees-2.0.2/ShrinkageTrees/man/as.mcmc.list.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/bayesian_bootstrap_ate.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/ovarian.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/ovarian_truth.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/plot.CausalShrinkageForest.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/plot.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/plot.ShrinkageTreesPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/predict.CausalShrinkageForest.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/predict.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.CausalShrinkageForest.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.CausalShrinkageForestPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.ShrinkageTreesPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.summary.CausalShrinkageForest.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.summary.CausalShrinkageForestPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.summary.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/print.summary.ShrinkageTreesPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/summary.CausalShrinkageForest.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/summary.CausalShrinkageForestPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/summary.ShrinkageTrees.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/man/summary.ShrinkageTreesPrediction.Rd |only ShrinkageTrees-2.0.2/ShrinkageTrees/src/CausalHorseForest.cpp | 168 + ShrinkageTrees-2.0.2/ShrinkageTrees/src/Forest.cpp | 13 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Forest.h | 7 ShrinkageTrees-2.0.2/ShrinkageTrees/src/ForestEngine.h | 27 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Functions.cpp | 112 - ShrinkageTrees-2.0.2/ShrinkageTrees/src/Functions.h | 50 ShrinkageTrees-2.0.2/ShrinkageTrees/src/HorseTrees.cpp | 41 ShrinkageTrees-2.0.2/ShrinkageTrees/src/HorseTrees.h | 1 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Info.h | 41 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Information.cpp | 49 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Information.h | 11 ShrinkageTrees-2.0.2/ShrinkageTrees/src/OuterGibbsFunctions.cpp | 74 ShrinkageTrees-2.0.2/ShrinkageTrees/src/OuterGibbsFunctions.h | 24 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Prerequisites.h | 19 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Random.h | 3 ShrinkageTrees-2.0.2/ShrinkageTrees/src/RcppExports.cpp | 25 ShrinkageTrees-2.0.2/ShrinkageTrees/src/ScaleMixture.cpp | 25 ShrinkageTrees-2.0.2/ShrinkageTrees/src/ScaleMixture.h | 26 ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanBirthDeath.cpp |only ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanBirthDeath.h |only ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanForest.cpp | 317 +-- ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanForest.h | 196 +- ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanForestFunctions.cpp | 769 ++++----- ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanForestFunctions.h | 127 + ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanTree.cpp | 722 +++----- ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanTree.h | 186 +- ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanTreeFunctions.cpp | 60 ShrinkageTrees-2.0.2/ShrinkageTrees/src/StanTreeFunctions.h | 21 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Tree.cpp | 25 ShrinkageTrees-2.0.2/ShrinkageTrees/src/Tree.h | 1 ShrinkageTrees-2.0.2/ShrinkageTrees/src/TreeModifications.cpp | 93 - ShrinkageTrees-2.0.2/ShrinkageTrees/src/probit-HorseTrees.cpp | 2 ShrinkageTrees-2.0.2/ShrinkageTrees/src/probit-HorseTrees.h | 1 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat.R | 2 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-CausalHorseForest.R | 196 ++ ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-CausalShrinkageTrees.R | 353 ++++ ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-HorseTrees.R | 248 ++ ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-ShrinkageTrees.R | 139 - ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-SurvivalBART.R | 2 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-SurvivalBCF.R | 7 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-SurvivalDART.R | 2 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-SurvivalShrinkageBCF.R | 7 ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-high-dimensional.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-interval-censored.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-plots.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/tests/testthat/test-predict.R |only ShrinkageTrees-2.0.2/ShrinkageTrees/vignettes |only 109 files changed, 5985 insertions(+), 2242 deletions(-)
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Title: Learned Pattern Similarity and Representation for Time Series
Description: Learned Pattern Similarity (LPS) for time series, as described
in Baydogan and Runger (2016) <doi:10.1007/s10618-015-0425-y>.
Implements an approach to model the dependency structure in time
series that generalizes the concept of autoregression to local
auto-patterns. Generates a pattern-based representation of time
series along with a similarity measure called Learned Pattern
Similarity (LPS). Introduces a generalized autoregressive kernel.
This package adapts C code from the 'randomForest' package by
Andy Liaw and Matthew Wiener, itself based on original Fortran
code by Leo Breiman and Adele Cutler.
Author: Mustafa Gokce Baydogan [aut, cre],
Leo Breiman [ctb] ,
Adele Cutler [ctb] ,
Andy Liaw [ctb] ,
Matthew Wiener [ctb] ,
Merck & Co., Inc. [cph]
Maintainer: Mustafa Gokce Baydogan <baydoganmustafa@gmail.com>
This is a re-admission after prior archival of version 1.0-5 dated 2015-03-27
Diff between LPStimeSeries versions 1.0-5 dated 2015-03-27 and 1.1-0 dated 2026-04-21
DESCRIPTION | 54 ++- MD5 | 37 +- NAMESPACE | 10 R/computeSimilarity.R | 41 ++ R/discriminativePatterns.R |only R/learnPattern.default.R | 33 + R/predict.learnPattern.R | 51 +- R/tunelearnPattern.R | 11 R/visualizePattern.R | 103 ++++- build |only inst/CITATION | 29 - man/computeSimilarity.Rd | 15 man/discriminativePatterns.Rd |only man/learnPattern.Rd | 19 - man/predict.learnPattern.Rd | 10 man/tunelearnPattern.Rd | 16 src/Makevars |only src/Makevars.win |only src/init.c |only src/regTree.c | 338 +++++++------------ src/regrf.c | 729 ++++++++++++++++++++---------------------- src/rf.h | 78 +--- src/rng.h |only 23 files changed, 818 insertions(+), 756 deletions(-)
Title: Analysis of Simulation Studies Including Monte Carlo Error
Description: Summarise results from simulation studies and compute Monte
Carlo standard errors of commonly used summary statistics. This
package is modelled on the 'simsum' user-written command in 'Stata'
(White I.R., 2010
<https://www.stata-journal.com/article.html?article=st0200>), further
extending it with additional performance measures and functionality.
Author: Alessandro Gasparini [cre, aut] ,
Ian R. White [aut]
Maintainer: Alessandro Gasparini <alessandro@ellessenne.xyz>
Diff between rsimsum versions 0.13.0 dated 2024-03-03 and 0.13.1 dated 2026-04-21
DESCRIPTION | 54 MD5 | 141 +- NAMESPACE | 15 NEWS.md | 10 R/autoplot.multisimsum.R | 50 R/autoplot.simsum.R | 306 ++++- R/autoplot.summary.multisimsum.R | 29 R/autoplot.summary.simsum.R | 27 R/compact-method-column.R | 5 R/data.R | 2 R/deprecated-get_data.R | 41 R/dropbig.R | 39 R/kable.R | 28 R/multisimsum.R | 118 +- R/nsim.R | 4 R/performance.R | 234 +++ R/plot-types.R | 317 ++++- R/print.multisimsum.R | 21 R/print.simsum.R | 21 R/print.summary.multisimsum.R | 49 R/print.summary.simsum.R | 24 R/rsimsum-package.R | 30 R/simsum.R | 281 +++- R/summary.multisimsum.R | 38 R/summary.simsum.R | 38 R/tidy.R | 38 R/utils.R | 199 ++- README.md | 16 build/partial.rdb |binary build/vignette.rds |binary inst/doc/A-introduction.Rmd | 78 - inst/doc/A-introduction.html | 187 +-- inst/doc/B-relhaz.R | 4 inst/doc/B-relhaz.html | 19 inst/doc/C-plotting.html | 55 inst/doc/D-nlp.html | 9 inst/doc/E-custom-inputs.html | 7 inst/doc/F-rsimsumtidyverse.html | 15 man/MIsim.Rd | 2 man/figures/README-ba-1.png |binary man/figures/README-density-1.png |binary man/figures/README-hex-1.png |binary man/figures/README-lolly-1.png |binary man/figures/README-nlp-1.png |binary man/figures/README-ridgeline-1.png |binary man/figures/README-zipper-1.png |binary tests/testthat/test-#15.R | 160 ++ tests/testthat/test-#23.R | 69 - tests/testthat/test-#26.R | 87 + tests/testthat/test-#28.R | 55 tests/testthat/test-#31.R | 48 tests/testthat/test-#33.R | 59 - tests/testthat/test-#41.R | 40 tests/testthat/test-#45.R | 9 tests/testthat/test-#47.R | 10 tests/testthat/test-#55.R | 36 tests/testthat/test-#60.R |only tests/testthat/test-autoplot.R | 1765 ++++++++++++++++++++++++------ tests/testthat/test-ci.limits.R | 65 + tests/testthat/test-dropbig.R | 147 ++ tests/testthat/test-get_data.R | 34 tests/testthat/test-invisible-returns.R | 33 tests/testthat/test-is.R | 36 tests/testthat/test-kable.R | 446 ++++++- tests/testthat/test-multisimsum.R | 322 ++++- tests/testthat/test-performance-math.R | 73 + tests/testthat/test-simsum.R | 310 ++++- tests/testthat/test-summary.multisimsum.R | 150 ++ tests/testthat/test-summary.simsum.R | 125 +- tests/testthat/test-tidy.R | 34 tests/testthat/test-utils.R | 76 + vignettes/A-introduction.Rmd | 78 - 72 files changed, 5586 insertions(+), 1232 deletions(-)
Title: Parser for the ITCH Protocol
Description: Efficiently parses, filters, and writes binary ITCH files (Version 5.0) containing detailed financial transactions as distributed by NASDAQ to a data.table. Includes functions to interact with NASDAQ data services at <https://emi.nasdaq.com/ITCH/> and <https://emi.nasdaq.com/ITCH/Stock_Locate_Codes/>.
Author: David Zimmermann-Kollenda [aut, cre]
Maintainer: David Zimmermann-Kollenda <david_j_zimmermann@hotmail.com>
This is a re-admission after prior archival of version 0.1.26 dated 2024-01-15
Diff between RITCH versions 0.1.26 dated 2024-01-15 and 0.1.30 dated 2026-04-21
DESCRIPTION | 12 LICENSE | 4 MD5 | 66 - NEWS.md | 118 +- R/RcppExports.R | 54 - R/count_functions.R | 630 +++++++------- R/data_samples.R | 312 +++---- R/download_stock_directory.R | 168 +-- R/filter_itch.R | 376 ++++---- R/globals.R | 10 R/gz_functions.R | 233 ++--- R/helpers.R | 596 +++++++------ R/read_functions.R | 1549 +++++++++++++++++------------------- R/write_itch.R | 9 R/zzz.R | 72 - README.md | 1034 ++++++++++++------------ inst/tinytest/test_filter_itch.R | 806 +++++++++--------- inst/tinytest/test_gz_functions.R | 66 - inst/tinytest/test_read_functions.R | 959 +++++++++++----------- inst/tinytest/test_write_itch.R | 240 ++--- man/count_functions.Rd | 11 man/download_sample_file.Rd | 114 +- man/download_stock_directory.Rd | 81 - man/filter_itch.Rd | 5 man/get_msg_classes.Rd | 2 man/gz_functions.Rd | 12 man/list_sample_files.Rd | 40 man/open_itch_sample_server.Rd | 40 man/open_itch_specification.Rd | 41 man/read_functions.Rd | 22 src/count_messages.cpp | 20 src/filter_itch.cpp | 20 src/read_functions.cpp | 20 tests/tinytests.R | 27 34 files changed, 3934 insertions(+), 3835 deletions(-)
Title: Branding, Theme Application and Navigation Utilities for
'bs4Dash' Dashboards
Description: Provides branding, theme application, and navigation utilities for
applications built with 'bs4Dash' and 'shiny'. Supports configurable
sidebar brand display modes, hover-expand behavior, and theme
customization using CSS variables. Includes standardized navigation
components such as refresh and help controls, along with helpers for
common navigation bar and footer layouts.
Author: George Arthur [aut, cre]
Maintainer: George Arthur <prigasgenthian48@gmail.com>
Diff between bs4Dashkit versions 0.1.0 dated 2026-03-10 and 0.2.0 dated 2026-04-21
DESCRIPTION | 6 MD5 | 101 +-- NAMESPACE | 3 NEWS.md | 117 +++ R/navbar_title.R | 17 R/sidebar_mode.R | 914 ++++++++++++++++--------------- R/theme.R | 87 ++ R/theme_presets.R | 162 ++++- R/titles.R | 278 +++++---- R/use_core.R | 474 +++++++++++++++- R/utils.R | 66 ++ R/validate.R | 110 +++ README.md | 99 ++- inst/app-assets/dash-nav-center.js | 151 +++-- inst/app-assets/dash-sidebar.css | 565 +++++++++---------- inst/app-assets/dash-theme.css | 143 ++++ inst/doc/branding-and-sidebar-modes.R | 34 - inst/doc/branding-and-sidebar-modes.Rmd | 77 +- inst/doc/branding-and-sidebar-modes.html | 77 +- inst/doc/complete-example-app.R | 6 inst/doc/complete-example-app.Rmd | 30 - inst/doc/complete-example-app.html | 9 inst/doc/getting-started.R | 44 + inst/doc/getting-started.Rmd | 122 +++- inst/doc/getting-started.html | 163 +++-- inst/doc/global-options.R | 8 inst/doc/global-options.Rmd | 20 inst/doc/global-options.html | 14 inst/doc/navigation-utilities.R | 59 -- inst/doc/navigation-utilities.Rmd | 105 +-- inst/doc/navigation-utilities.html | 212 +++---- inst/doc/theming-and-presets.R | 9 inst/doc/theming-and-presets.Rmd | 44 - inst/doc/theming-and-presets.html | 30 - inst/examples |only man/bs4dashkit_demo_app.Rd |only man/bs4dashkit_example_app.Rd |only man/bs4dashkit_theme_presets.Rd |only man/dash_brand_ui.Rd | 6 man/dash_nav_title.Rd | 2 man/dash_titles.Rd | 28 man/use_bs4Dashkit_core.Rd | 1 man/use_dash_sidebar_brand_mode.Rd | 28 man/use_dash_theme.Rd | 34 + tests/testthat/test-dash-titles.R | 265 ++++++-- tests/testthat/test-nav-buttons.R | 17 tests/testthat/test-theme-presets.R |only vignettes/branding-and-sidebar-modes.Rmd | 77 +- vignettes/complete-example-app.Rmd | 30 - vignettes/getting-started.Rmd | 122 +++- vignettes/global-options.Rmd | 20 vignettes/navigation-utilities.Rmd | 105 +-- vignettes/theming-and-presets.Rmd | 44 - 53 files changed, 3354 insertions(+), 1781 deletions(-)
Title: Pubmed Unified REtrieval for Multi-Output Exploration
Description: Access a variety of 'PubMed' data through a single, user-friendly interface, including abstracts, bibliometrics from 'iCite', pubtations from 'PubTator3', and full-text records from 'PMC'.
Author: Jason Timm [aut, cre]
Maintainer: Jason Timm <JaTimm@salud.unm.edu>
Diff between puremoe versions 1.0.3 dated 2026-01-26 and 1.0.4 dated 2026-04-21
puremoe-1.0.3/puremoe/R/source_references.R |only puremoe-1.0.4/puremoe/DESCRIPTION | 11 - puremoe-1.0.4/puremoe/MD5 | 30 ++- puremoe-1.0.4/puremoe/NAMESPACE | 3 puremoe-1.0.4/puremoe/NEWS.md | 30 +++ puremoe-1.0.4/puremoe/R/data_mesh_frequencies.R |only puremoe-1.0.4/puremoe/R/get_records.R | 31 +-- puremoe-1.0.4/puremoe/R/pmid_to_ftp.R | 61 +++---- puremoe-1.0.4/puremoe/R/source_pmc.R | 129 ++++++---------- puremoe-1.0.4/puremoe/README.md | 167 +++++++-------------- puremoe-1.0.4/puremoe/build |only puremoe-1.0.4/puremoe/data |only puremoe-1.0.4/puremoe/inst |only puremoe-1.0.4/puremoe/man/data_mesh_frequencies.Rd |only puremoe-1.0.4/puremoe/man/get_records.Rd | 8 - puremoe-1.0.4/puremoe/tests |only puremoe-1.0.4/puremoe/vignettes |only 17 files changed, 209 insertions(+), 261 deletions(-)
Title: Estimation and Exogenous Covariate Selection for ARCH-m(X),
Additive ARCH-m(x), and GARCH-X Models
Description: Estimates the parameters and nonparametric functions of an ARCH-m(X) model with exogenous covariates, estimates the parameters and nonparametric functions of an Additive ARCH-m(X) model with exogenous covariates, estimates the parameters of a GARCH-X model with exogenous covariates, performs hypothesis tests for the covariates returning the p-values, and performs stepwise variable selection on the exogenous covariates, and uses False Discovery Rate p-value corrections to select the exogenous variables.
Author: Adriano Zambom [aut, cre],
Vincent Alegrete [aut],
Elijah Sagaran [aut],
Avni Israni [aut]
Maintainer: Adriano Zambom <adriano.zambom@csun.edu>
Diff between GARCH.X versions 1.0 dated 2025-06-17 and 2.0 dated 2026-04-21
GARCH.X-1.0/GARCH.X/R/AIC.R |only GARCH.X-1.0/GARCH.X/R/BIC.R |only GARCH.X-1.0/GARCH.X/R/GARCHX.default.R |only GARCH.X-1.0/GARCH.X/R/GARCHX_select.R |only GARCH.X-1.0/GARCH.X/R/GARCHX_select.default.R |only GARCH.X-1.0/GARCH.X/R/Inv.R |only GARCH.X-1.0/GARCH.X/R/Likelihood.GARCHX.R |only GARCH.X-1.0/GARCH.X/R/Likelihood.R |only GARCH.X-1.0/GARCH.X/R/anova_test_univariate.R |only GARCH.X-1.0/GARCH.X/R/check_order.R |only GARCH.X-1.0/GARCH.X/R/check_pi.R |only GARCH.X-1.0/GARCH.X/R/choosek.R |only GARCH.X-1.0/GARCH.X/R/create_ARCHMX.R |only GARCH.X-1.0/GARCH.X/R/create_ARCHMXobj.R |only GARCH.X-1.0/GARCH.X/R/create_GARCHXobj.R |only GARCH.X-1.0/GARCH.X/R/estimate.GARCHX.R |only GARCH.X-1.0/GARCH.X/R/estimate.R |only GARCH.X-1.0/GARCH.X/R/get_kernel_weights.R |only GARCH.X-1.0/GARCH.X/R/nadaray_watson.R |only GARCH.X-1.0/GARCH.X/R/nadaray_watson_cv.R |only GARCH.X-1.0/GARCH.X/R/objf.R |only GARCH.X-1.0/GARCH.X/R/predict.R |only GARCH.X-1.0/GARCH.X/R/simulate.GARCHX.R |only GARCH.X-1.0/GARCH.X/R/simulate.R |only GARCH.X-1.0/GARCH.X/R/variance.GARCHX.R |only GARCH.X-1.0/GARCH.X/R/variance.R |only GARCH.X-1.0/GARCH.X/man/AIC.Rd |only GARCH.X-1.0/GARCH.X/man/BIC.Rd |only GARCH.X-1.0/GARCH.X/man/GARCHX_select.Rd |only GARCH.X-1.0/GARCH.X/man/predict.Rd |only GARCH.X-1.0/GARCH.X/man/simulate.Rd |only GARCH.X-2.0/GARCH.X/DESCRIPTION | 25 +- GARCH.X-2.0/GARCH.X/MD5 | 91 ++++--- GARCH.X-2.0/GARCH.X/NAMESPACE | 43 ++- GARCH.X-2.0/GARCH.X/R/AIC.ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/AIC.ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/AIC.GARCHX.R | 22 - GARCH.X-2.0/GARCH.X/R/ARCHMX_choosek.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/ARCHmXAdditive_backfitting.R |only GARCH.X-2.0/GARCH.X/R/ARCHmXAdditive_backfitting_lowes.R |only GARCH.X-2.0/GARCH.X/R/ARCHmXAdditive_backfitting_variance_smooth.R |only GARCH.X-2.0/GARCH.X/R/ARCHmXAdditive_estimate.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_anova_test_univariate.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_kernel_between_iso.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_kernel_matrix_iso.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_nw_cv_bandwidth.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_predict_nw_iso.R |only GARCH.X-2.0/GARCH.X/R/ARCHmX_simulate_white_noise.R |only GARCH.X-2.0/GARCH.X/R/BIC.ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/BIC.ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/BIC.GARCHX.R | 26 +- GARCH.X-2.0/GARCH.X/R/GARCHX.R | 29 -- GARCH.X-2.0/GARCH.X/R/GARCHX_Inv.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_Likelihood.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_check_order.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_check_pi.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_estimate.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_objf.R |only GARCH.X-2.0/GARCH.X/R/GARCHX_variance.R |only GARCH.X-2.0/GARCH.X/R/new_ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/new_ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/new_GARCHX.R |only GARCH.X-2.0/GARCH.X/R/predict.ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/predict.ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/predict.GARCHX.R | 115 +++++----- GARCH.X-2.0/GARCH.X/R/set_seed.R |only GARCH.X-2.0/GARCH.X/R/sim.ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/sim.ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/sim.GARCHX.R |only GARCH.X-2.0/GARCH.X/R/stepwise.R |only GARCH.X-2.0/GARCH.X/R/summary.ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/summary.ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/summary.GARCHX.R |only GARCH.X-2.0/GARCH.X/R/validate_ARCHmX.R |only GARCH.X-2.0/GARCH.X/R/validate_ARCHmXAdditive.R |only GARCH.X-2.0/GARCH.X/R/validate_GARCHX.R |only GARCH.X-2.0/GARCH.X/man/ARCHmX.Rd |only GARCH.X-2.0/GARCH.X/man/ARCHmXAdditive.Rd |only GARCH.X-2.0/GARCH.X/man/GARCHX.Rd | 52 +++- GARCH.X-2.0/GARCH.X/man/sim.ARCHmX.Rd |only GARCH.X-2.0/GARCH.X/man/sim.ARCHmXAdditive.Rd |only GARCH.X-2.0/GARCH.X/man/sim.GARCHX.Rd |only GARCH.X-2.0/GARCH.X/man/stepwise.Rd |only 85 files changed, 222 insertions(+), 181 deletions(-)
Title: Mixture-of-Experts Wishart Models for Covariance Data
Description: Methods for maximum likelihood and Bayesian estimation for the Wishart mixture model and the mixture-of-experts Wishart (MoE-Wishart) model. The package provides four inference algorithms for these models, each implemented using the expectation–maximization (EM) algorithm for maximum likelihood estimation and a fully Bayesian approach via Gibbs-within-Metropolis–Hastings sampling.
Author: The Tien Mai [aut],
Zhi Zhao [aut, cre]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between moewishart versions 1.0 dated 2026-02-19 and 1.1 dated 2026-04-21
DESCRIPTION | 9 - MD5 | 31 ++-- NAMESPACE | 3 NEWS.md | 21 --- R/CTRP.R |only R/moewishart.R | 8 - R/plotMCMC.R |only README.md | 298 ++++++++++++++++++++++++++++++++++++++++++---- build/vignette.rds |binary data |only inst/CITATION |only inst/doc/Intro.R | 3 inst/doc/Intro.Rmd | 14 +- inst/doc/Intro.html | 142 ++++++++++----------- man/CTRP.Rd |only man/moewishart.Rd | 4 man/plotMCMC.Rd |only vignettes/Intro.Rmd | 14 +- vignettes/Intro.knit.html | 142 ++++++++++----------- 19 files changed, 476 insertions(+), 213 deletions(-)
Title: Applying Partitioning Around Medoids to Single Cell Data with
High Number of Cells
Description: PAM (Partitioning Around Medoids) algorithm application to samples of single cell sequencing techniques
with a high number of cells (as many as the computer memory allows). The package uses a binary format to
store matrices (either full, sparse or symmetric) in files written in the disk that can contain any data type
(not just double) which allows its manipulation when memory is sufficient to load them as int or float, but not
as double. The PAM implementation is done in parallel, using several/all the cores of the machine, if it has them.
This package shares a great part of its code with packages 'jmatrix' and 'parallelpam' but their functionality is
included here so there is no need to install them.
Author: Juan Domingo [aut, cre] ,
Guillermo Ayala [ctb] ,
Spanish Ministry of Science and Innovation, MCIN/AEI
<doi:10.13039/501100011033> [fnd]
Maintainer: Juan Domingo <Juan.Domingo@uv.es>
Diff between scellpam versions 1.4.6.2 dated 2024-07-18 and 1.4.7 dated 2026-04-21
DESCRIPTION | 15 MD5 | 42 + NAMESPACE | 4 NEWS | 6 R/RcppExports.R | 90 ++++ build/vignette.rds |binary inst/doc/jmatrixsc.html | 618 +++++++++++++-------------- inst/doc/parallelpamsc.R | 46 +- inst/doc/parallelpamsc.html | 441 +++++++++---------- inst/doc/scellpam.R | 70 +-- inst/doc/scellpam.html | 667 ++++++++++++++---------------- inst/include/closecases.h |only inst/include/filtermat.h |only man/ClosestCases.Rd |only man/ExtractAndWriteDissimilarityMatrix.Rd |only man/JMatInfoList.Rd |only man/ScellpamGetDebug.Rd |only src/RcppExports.cpp | 53 ++ src/biodatatojmat.cpp | 8 src/closecases.cpp |only src/debugpar.cpp | 23 + src/dissimmat.cpp | 56 ++ src/filtermat.cpp |only src/filtersil.cpp | 162 ------- src/matinfo.cpp | 78 +++ src/memhelper.cpp | 16 26 files changed, 1260 insertions(+), 1135 deletions(-)
Title: Biplot of Multivariate Data Based on Principal Components
Analysis
Description: Implements biplot (2d and 3d) of multivariate data based
on principal components analysis and diagnostic tools of the quality of the reduction.
Author: Jose C. Faria [aut, cre],
Ivan B. Allaman [aut],
Clarice G. B. Demetrio [aut]
Maintainer: Jose C. Faria <joseclaudio.faria@gmail.com>
Diff between bpca versions 1.3-8 dated 2025-09-10 and 1.3-9 dated 2026-04-21
DESCRIPTION | 8 - MD5 | 62 +++---- NEWS | 12 + R/bpca.R | 1 R/bpca.default.R | 1 R/bpca.prcomp.R | 1 R/dt.tools.R | 1 R/plot.bpca.2d.R | 104 +++++++------ R/plot.bpca.3d.R | 374 ++++++++++++++++++++++-------------------------- R/plot.qbpca.R | 1 R/print.xtable.bpca.R | 1 R/qbpca.R | 1 R/summary.bpca.R | 1 R/var.rbf.R | 1 R/var.rdf.R | 1 R/xtable.bpca.R | 1 demo/bpca-dinamic-3d.R | 5 demo/bpca-static-2d.R | 42 ----- demo/bpca-static-3d.R | 36 +++- demo/bpca.R | 223 +++++++++++++--------------- demo/iris-var-rd.R | 21 +- demo/iris.R | 15 + demo/rock-var-rd.R | 12 - demo/var-rb-2d.R | 56 +++---- demo/var-rb-3d.R | 64 ++++---- demo/var-rd-2d.R | 50 +++++- inst/doc/latex-bpca.pdf |binary man/bpca-package.Rd | 19 -- man/bpca.Rd | 27 +-- man/gabriel1971.Rd | 3 man/plot.Rd | 42 ++--- man/var.rdf.Rd | 23 -- 32 files changed, 591 insertions(+), 618 deletions(-)
Title: Create TLGs using the 'tidyverse'
Description: Generate tables, listings, and graphs (TLG) using 'tidyverse'.
Tables can be created functionally, using a standard TLG process, or by
specifying table and column metadata to create generic analysis summaries.
The 'envsetup' package can also be leveraged to create environments for table
creation.
Author: Nicholas Masel [aut],
Steven Haesendonckx [aut],
Pelagia Alexandra Papadopoulou [aut],
Sheng-Wei Wang [aut],
Eli Miller [aut] ,
Nathan Kosiba [aut] ,
Aidan Ceney [aut] ,
Janssen R&D [cph, fnd],
David Hugh-Jones [cph] ,
Konrad Pagacz [aut, cre]
Maintainer: Konrad Pagacz <kpagacz@its.jnj.com>
Diff between tidytlg versions 0.11.0 dated 2025-12-19 and 0.12.0 dated 2026-04-21
DESCRIPTION | 6 MD5 | 41 +++--- NAMESPACE | 2 NEWS.md | 7 + R/gentlg.R | 89 ++++++++++--- R/gentlg_single.R | 94 ++++++++------ R/getFileName.R | 10 - R/insert_empty_rows.R | 18 ++ R/replace_lead_whitespaces_ind.R |only inst/WORDLIST | 49 ++----- inst/doc/tbl_manipulation.html | 20 +-- inst/doc/tidytlg.html | 16 +- man/gentlg.Rd | 37 +++++ man/get_file_name.Rd |only man/insert_empty_rows.Rd | 16 +- man/replace_lead_whitespaces_ind.Rd |only tests/testthat/_snaps/borders/stubborntest.rtf | 2 tests/testthat/test-gentlg.R | 125 ++++++++++++++++++- tests/testthat/test_outputs/borders/stubborntest.rtf | 2 tests/testthat/test_outputs/png1.png |binary tests/testthat/test_outputs/png1.rtf | 2 tests/testthat/test_outputs/png2.png |binary tests/testthat/test_outputs/png2.rtf | 2 23 files changed, 384 insertions(+), 154 deletions(-)
Title: Person Parameter Estimation
Description: The PP package includes estimation of (MLE, WLE, MAP, EAP, ROBUST)
person parameters for the 1,2,3,4-PL model and the GPCM (generalized
partial credit model). The parameters are estimated under the assumption
that the item parameters are known and fixed. The package is useful e.g. in
the case that items from an item pool / item bank with known item parameters
are administered to a new population of test-takers and an ability
estimation for every test-taker is needed.
Author: Jan Steinfeld [cre, aut] ,
Manuel Reif [aut]
Maintainer: Jan Steinfeld <jan.d.steinfeld@gmail.com>
Diff between PP versions 0.6.3-11 dated 2021-05-27 and 0.6.4-1 dated 2026-04-21
PP-0.6.3-11/PP/man/PP.Rd |only PP-0.6.4-1/PP/DESCRIPTION | 13 PP-0.6.4-1/PP/MD5 | 130 +-- PP-0.6.4-1/PP/NAMESPACE | 73 +- PP-0.6.4-1/PP/R/Infit.R | 144 ++-- PP-0.6.4-1/PP/R/Infitpoly.R | 214 +++--- PP-0.6.4-1/PP/R/JKpp.R | 916 +++++++++++++------------- PP-0.6.4-1/PP/R/Outfit.R | 142 ++-- PP-0.6.4-1/PP/R/Outfitpoly.R | 206 ++--- PP-0.6.4-1/PP/R/PP.R | 155 ++-- PP-0.6.4-1/PP/R/PP_4pl.R | 690 +++++++++---------- PP-0.6.4-1/PP/R/PP_gpcm.R | 474 ++++++------- PP-0.6.4-1/PP/R/PPall.R | 550 +++++++-------- PP-0.6.4-1/PP/R/PPass.R | 460 ++++++------- PP-0.6.4-1/PP/R/PV.R | 772 ++++++++++----------- PP-0.6.4-1/PP/R/Pfit.R | 318 ++++----- PP-0.6.4-1/PP/R/RcppExports.R | 212 +++--- PP-0.6.4-1/PP/R/checkINP.R | 76 +- PP-0.6.4-1/PP/R/dataRd.R | 90 +- PP-0.6.4-1/PP/R/eap.R | 306 ++++---- PP-0.6.4-1/PP/R/findmodel.R | 58 - PP-0.6.4-1/PP/R/jackknife.R | 40 - PP-0.6.4-1/PP/R/lz.R | 74 +- PP-0.6.4-1/PP/R/lzstar.R | 134 +-- PP-0.6.4-1/PP/R/lzstar_mixed.R |only PP-0.6.4-1/PP/R/make_dup.R | 38 - PP-0.6.4-1/PP/R/pkg_start.R | 10 PP-0.6.4-1/PP/R/prints.R | 316 ++++---- PP-0.6.4-1/PP/R/quadIT.R | 150 ++-- PP-0.6.4-1/PP/R/sim_gpcm.R | 100 +- PP-0.6.4-1/PP/R/stdrdize_hist.R | 88 +- PP-0.6.4-1/PP/build/vignette.rds |binary PP-0.6.4-1/PP/inst/CITATION | 38 - PP-0.6.4-1/PP/inst/doc/intro_pfit.R | 336 ++++----- PP-0.6.4-1/PP/inst/doc/intro_pfit.Rmd | 458 ++++++------- PP-0.6.4-1/PP/inst/doc/intro_pfit.html | 752 +++++++++++---------- PP-0.6.4-1/PP/inst/doc/intro_pp.R | 140 +-- PP-0.6.4-1/PP/inst/doc/intro_pp.Rmd | 374 +++++----- PP-0.6.4-1/PP/inst/doc/intro_pp.html | 829 ++++++++++++----------- PP-0.6.4-1/PP/inst/doc/ppass_par_and_fit.R | 152 ++-- PP-0.6.4-1/PP/inst/doc/ppass_par_and_fit.Rmd | 238 +++--- PP-0.6.4-1/PP/inst/doc/ppass_par_and_fit.html | 659 +++++++++--------- PP-0.6.4-1/PP/man/Jkpp.Rd | 472 ++++++------- PP-0.6.4-1/PP/man/PP-package.Rd |only PP-0.6.4-1/PP/man/PP_4pl.Rd | 464 ++++++------- PP-0.6.4-1/PP/man/PP_gpcm.Rd | 296 ++++---- PP-0.6.4-1/PP/man/PPall.Rd | 346 ++++----- PP-0.6.4-1/PP/man/PPass.Rd | 242 +++--- PP-0.6.4-1/PP/man/PV.Rd | 372 +++++----- PP-0.6.4-1/PP/man/Pfit_lzstarmix.Rd |only PP-0.6.4-1/PP/man/findmodel.Rd | 170 ++-- PP-0.6.4-1/PP/man/fourpl_df.Rd | 34 PP-0.6.4-1/PP/man/lzstar_mixed.Rd |only PP-0.6.4-1/PP/man/pfit.Rd | 360 +++++----- PP-0.6.4-1/PP/man/pp_amt.Rd | 86 +- PP-0.6.4-1/PP/man/print_personfit_summary.Rd |only PP-0.6.4-1/PP/man/sim_4pl.Rd | 148 ++-- PP-0.6.4-1/PP/man/sim_gpcm.Rd | 110 +-- PP-0.6.4-1/PP/src/GPCM4PL_stuff.cpp | 91 -- PP-0.6.4-1/PP/src/RcppExports.cpp | 5 PP-0.6.4-1/PP/tests/testthat.R | 2 PP-0.6.4-1/PP/tests/testthat/tests4pl.R | 248 +++---- PP-0.6.4-1/PP/tests/testthat/testsgpcm.R | 58 - PP-0.6.4-1/PP/tests/testthat/testsgpcm4pl.R | 110 +-- PP-0.6.4-1/PP/tests/testthat/testsjk.R | 102 +- PP-0.6.4-1/PP/vignettes/intro_pfit.Rmd | 458 ++++++------- PP-0.6.4-1/PP/vignettes/intro_pp.Rmd | 374 +++++----- PP-0.6.4-1/PP/vignettes/literatur.bib | 246 +++--- PP-0.6.4-1/PP/vignettes/ppass_par_and_fit.Rmd | 238 +++--- 69 files changed, 8054 insertions(+), 7903 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating
random and regular graphs, graph visualization, centrality methods and
much more.
Author: Gabor Csardi [aut] ,
Tamas Nepusz [aut] ,
Vincent Traag [aut] ,
Szabolcs Horvat [aut] ,
Fabio Zanini [aut] ,
Daniel Noom [aut],
Kirill Mueller [aut, cre] ,
Michael Antonov [ctb],
Chan Zuckerberg Initiative [fnd] ,
David Schoch [aut] ,
Maelle Salmon [a [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between igraph versions 2.2.3 dated 2026-04-07 and 2.3.0 dated 2026-04-21
DESCRIPTION | 18 MD5 | 1295 +- NAMESPACE | 14 NEWS.md | 73 R/aaa-auto.R |12356 +++++++++++++++++++++++---- R/adjacency.R | 48 R/assortativity.R | 47 R/attributes.R | 86 R/bipartite.R | 21 R/centrality.R | 186 R/centralization.R | 86 R/cliques.R | 238 R/cocitation.R | 20 R/cohesive.blocks.R | 6 R/coloring.R | 11 R/community.R | 226 R/components.R | 51 R/console.R | 10 R/conversion.R | 164 R/cycles.R | 67 R/decomposition.R | 4 R/degseq.R | 13 R/efficiency.R | 41 R/embedding.R | 54 R/epi.R | 4 R/eulerian.R | 26 R/fit.R | 6 R/flow.R | 180 R/foreign.R | 119 R/games.R | 845 + R/glet.R | 41 R/hrg.R | 77 R/incidence.R | 13 R/indexing.R | 4 R/interface.R | 169 R/iterators.R | 54 R/layout.R | 373 R/make.R | 709 + R/minimum.spanning.tree.R | 11 R/motifs.R | 106 R/operators.R | 55 R/other.R | 21 R/par.R | 4 R/paths.R | 60 R/plot.R | 6 R/plot.common.R | 2 R/plot.shapes.R | 2 R/pp.R | 2 R/print.R | 6 R/random_walk.R | 22 R/rewire.R | 51 R/scan.R | 103 R/sgm.R | 7 R/similarity.R | 23 R/simple.R | 27 R/sir.R | 10 R/stochastic_matrix.R | 13 R/structural-properties.R | 568 - R/structure.info.R | 9 R/topology.R | 537 - R/trees.R | 36 R/triangles.R | 15 R/utils-assert-args.R | 35 R/utils.R | 22 R/uuid.R | 2 R/versions.R | 20 R/weakref.R | 8 inst/doc/igraph.R | 10 inst/doc/igraph.Rmd | 10 inst/doc/igraph.html | 57 inst/doc/igraph_ES.R | 32 inst/doc/igraph_ES.html | 83 inst/doc/igraph_ES.rmd | 36 man/E.Rd | 4 man/V.Rd | 4 man/aaa-igraph-package.Rd | 1 man/add.edges.Rd | 4 man/add.vertices.Rd | 4 man/add_edges.Rd | 5 man/add_vertices.Rd | 5 man/adjacent.triangles.Rd | 4 man/adjacent_vertices.Rd | 4 man/aging.ba.game.Rd | 4 man/aging.barabasi.game.Rd | 4 man/aging.prefatt.game.Rd | 4 man/align_layout.Rd | 4 man/all_simple_paths.Rd | 4 man/alpha.centrality.Rd | 4 man/alpha_centrality.Rd | 4 man/are.connected.Rd | 4 man/are_adjacent.Rd | 6 man/articulation.points.Rd | 4 man/articulation_points.Rd | 7 man/as.directed.Rd | 4 man/as.igraph.Rd | 4 man/as.matrix.igraph.Rd | 4 man/as.undirected.Rd | 4 man/as_adj.Rd | 4 man/as_adj_list.Rd | 4 man/as_adjacency_matrix.Rd | 4 man/as_biadjacency_matrix.Rd | 4 man/as_directed.Rd | 6 man/as_edgelist.Rd | 4 man/as_graphnel.Rd | 4 man/as_incidence_matrix.Rd | 4 man/as_long_data_frame.Rd | 4 man/assortativity.Rd | 9 man/assortativity.degree.Rd | 4 man/assortativity.nominal.Rd | 7 man/asymmetric.preference.game.Rd | 6 man/authority.score.Rd | 4 man/autocurve.edges.Rd | 4 man/automorphism_group.Rd | 6 man/automorphisms.Rd | 4 man/average.path.length.Rd | 4 man/ba.game.Rd | 9 man/barabasi.game.Rd | 9 man/betweenness.Rd | 4 man/bfs.Rd | 7 man/biconnected.components.Rd | 4 man/biconnected_components.Rd | 7 man/bipartite.mapping.Rd | 4 man/bipartite.projection.Rd | 4 man/bipartite.projection.size.Rd | 4 man/bipartite.random.game.Rd | 4 man/bipartite_mapping.Rd | 6 man/bipartite_projection.Rd | 6 man/bonpow.Rd | 4 man/callaway.traits.game.Rd | 4 man/canonical.permutation.Rd | 4 man/canonical_permutation.Rd | 6 man/centr_betw.Rd | 4 man/centr_betw_tmax.Rd | 6 man/centr_clo.Rd | 6 man/centr_clo_tmax.Rd | 6 man/centr_degree.Rd | 6 man/centr_degree_tmax.Rd | 4 man/centr_eigen.Rd | 6 man/centr_eigen_tmax.Rd | 6 man/centralization.betweenness.Rd | 4 man/centralization.betweenness.tmax.Rd | 4 man/centralization.closeness.Rd | 4 man/centralization.closeness.tmax.Rd | 4 man/centralization.degree.Rd | 4 man/centralization.degree.tmax.Rd | 4 man/centralization.evcent.Rd | 4 man/centralization.evcent.tmax.Rd | 4 man/centralize.Rd | 6 man/centralize.scores.Rd | 4 man/cited.type.game.Rd | 4 man/citing.cited.type.game.Rd | 4 man/clique.number.Rd | 4 man/cliques.Rd | 42 man/closeness.Rd | 4 man/cluster.distribution.Rd | 4 man/cluster_edge_betweenness.Rd | 4 man/cluster_fast_greedy.Rd | 4 man/cluster_fluid_communities.Rd | 4 man/cluster_infomap.Rd | 4 man/cluster_label_prop.Rd | 4 man/cluster_leading_eigen.Rd | 4 man/cluster_leiden.Rd | 4 man/cluster_louvain.Rd | 4 man/cluster_optimal.Rd | 4 man/cluster_spinglass.Rd | 4 man/cluster_walktrap.Rd | 4 man/clusters.Rd | 4 man/cocitation.Rd | 4 man/cohesive.blocks.Rd | 4 man/cohesive_blocks.Rd | 4 man/communities.Rd | 4 man/compare.Rd | 4 man/complementer.Rd | 5 man/component_wise.Rd | 5 man/components.Rd | 7 man/compose.Rd | 5 man/connect.neighborhood.Rd | 4 man/consensus_tree.Rd | 6 man/constraint.Rd | 4 man/contract.Rd | 7 man/contract.vertices.Rd | 4 man/convex.hull.Rd | 4 man/convex_hull.Rd | 6 man/coreness.Rd | 4 man/count.multiple.Rd | 4 man/count_automorphisms.Rd | 6 man/count_isomorphisms.Rd | 4 man/count_motifs.Rd | 4 man/count_reachable.Rd |only man/count_subgraph_isomorphisms.Rd | 4 man/count_triangles.Rd | 6 man/curve_multiple.Rd | 4 man/decompose.Rd | 5 man/decompose.graph.Rd | 4 man/degree.Rd | 14 man/degree.distribution.Rd | 4 man/degree.sequence.game.Rd | 4 man/delete.edges.Rd | 4 man/delete.vertices.Rd | 4 man/delete_edges.Rd | 5 man/delete_vertices.Rd | 5 man/dfs.Rd | 4 man/diameter.Rd | 4 man/difference.Rd | 1 man/difference.igraph.Rd | 5 man/dim_select.Rd | 6 man/disjoint_union.Rd | 5 man/distances.Rd | 6 man/diversity.Rd | 6 man/dominator.tree.Rd | 4 man/dominator_tree.Rd | 4 man/dyad.census.Rd | 4 man/dyad_census.Rd | 6 man/eccentricity.Rd | 6 man/edge.Rd | 1 man/edge.betweenness.Rd | 4 man/edge.betweenness.community.Rd | 4 man/edge.connectivity.Rd | 4 man/edge.disjoint.paths.Rd | 4 man/edge_attr.Rd | 4 man/edge_connectivity.Rd | 4 man/edge_density.Rd | 6 man/ego.Rd | 5 man/eigen_centrality.Rd | 6 man/embed_adjacency_matrix.Rd | 6 man/embed_laplacian_matrix.Rd | 6 man/ends.Rd | 4 man/erdos.renyi.game.Rd | 4 man/establishment.game.Rd | 4 man/estimate_betweenness.Rd | 4 man/estimate_closeness.Rd | 4 man/estimate_edge_betweenness.Rd | 4 man/evcent.Rd | 4 man/exportPajek.Rd | 4 man/farthest.nodes.Rd | 4 man/fastgreedy.community.Rd | 4 man/feedback_arc_set.Rd | 6 man/feedback_vertex_set.Rd | 6 man/find_cycle.Rd | 6 man/fit_hrg.Rd | 4 man/forest.fire.game.Rd | 4 man/from_incidence_matrix.Rd | 4 man/get.adjacency.Rd | 4 man/get.adjedgelist.Rd | 4 man/get.adjlist.Rd | 4 man/get.all.shortest.paths.Rd | 4 man/get.data.frame.Rd | 4 man/get.diameter.Rd | 4 man/get.edge.attribute.Rd | 4 man/get.edge.ids.Rd | 4 man/get.edgelist.Rd | 4 man/get.incidence.Rd | 4 man/get.shortest.paths.Rd | 4 man/get.stochastic.Rd | 4 man/get.vertex.attribute.Rd | 4 man/get_edge_ids.Rd | 4 man/girth.Rd | 4 man/global_efficiency.Rd | 6 man/gorder.Rd | 6 man/graph.Rd | 4 man/graph.adhesion.Rd | 4 man/graph.adjacency.Rd | 4 man/graph.adjlist.Rd | 4 man/graph.atlas.Rd | 4 man/graph.automorphisms.Rd | 4 man/graph.bfs.Rd | 7 man/graph.bipartite.Rd | 4 man/graph.complementer.Rd | 4 man/graph.compose.Rd | 4 man/graph.coreness.Rd | 4 man/graph.data.frame.Rd | 4 man/graph.de.bruijn.Rd | 4 man/graph.density.Rd | 4 man/graph.dfs.Rd | 4 man/graph.disjoint.union.Rd | 4 man/graph.diversity.Rd | 4 man/graph.edgelist.Rd | 4 man/graph.empty.Rd | 4 man/graph.extended.chordal.ring.Rd | 4 man/graph.famous.Rd | 4 man/graph.formula.Rd | 4 man/graph.full.Rd | 4 man/graph.full.bipartite.Rd | 4 man/graph.full.citation.Rd | 4 man/graph.graphdb.Rd | 4 man/graph.incidence.Rd | 4 man/graph.isocreate.Rd | 4 man/graph.kautz.Rd | 4 man/graph.knn.Rd | 4 man/graph.laplacian.Rd | 4 man/graph.lattice.Rd | 6 man/graph.lcf.Rd | 4 man/graph.maxflow.Rd | 4 man/graph.mincut.Rd | 4 man/graph.motifs.Rd | 6 man/graph.motifs.est.Rd | 4 man/graph.motifs.no.Rd | 4 man/graph.neighborhood.Rd | 4 man/graph.ring.Rd | 4 man/graph.star.Rd | 4 man/graph.strength.Rd | 4 man/graph.tree.Rd | 4 man/graph.union.Rd | 4 man/graph_.Rd | 4 man/graph_center.Rd | 6 man/graph_from_adj_list.Rd | 6 man/graph_from_adjacency_matrix.Rd | 15 man/graph_from_atlas.Rd | 14 man/graph_from_biadjacency_matrix.Rd | 4 man/graph_from_data_frame.Rd | 4 man/graph_from_edgelist.Rd | 10 man/graph_from_graphdb.Rd | 4 man/graph_from_graphnel.Rd | 4 man/graph_from_incidence_matrix.Rd | 4 man/graph_from_isomorphism_class.Rd | 6 man/graph_from_lcf.Rd | 6 man/graph_from_literal.Rd | 10 man/graphlet_basis.Rd | 6 man/graphlets.candidate.basis.Rd | 4 man/graphlets.project.Rd | 4 man/greedy_vertex_coloring.Rd | 6 man/grg.game.Rd | 4 man/growing.random.game.Rd | 4 man/gsize.Rd | 4 man/harmonic_centrality.Rd | 6 man/has.multiple.Rd | 4 man/has_eulerian_path.Rd | 6 man/head_of.Rd | 4 man/hits_scores.Rd | 6 man/hrg.Rd | 6 man/hrg.consensus.Rd | 4 man/hrg.create.Rd | 4 man/hrg.dendrogram.Rd | 4 man/hrg.fit.Rd | 4 man/hrg.game.Rd | 4 man/hrg.predict.Rd | 4 man/hrg_tree.Rd | 6 man/hub.score.Rd | 4 man/hub_score.Rd | 4 man/igraph-minus.Rd | 1 man/igraph.from.graphNEL.Rd | 4 man/igraph.sample.Rd | 4 man/igraph.to.graphNEL.Rd | 4 man/igraph.version.Rd | 4 man/igraph_version.Rd | 4 man/incident.Rd | 4 man/incident_edges.Rd | 4 man/independence.number.Rd | 4 man/independent.vertex.sets.Rd | 4 man/induced.subgraph.Rd | 4 man/infomap.community.Rd | 4 man/inside-square-error.Rd | 4 man/interconnected.islands.game.Rd | 4 man/intersection.Rd | 1 man/intersection.igraph.Rd | 5 man/invalidate_cache.Rd |only man/is.connected.Rd | 4 man/is.dag.Rd | 4 man/is.degree.sequence.Rd | 4 man/is.directed.Rd | 4 man/is.graphical.degree.sequence.Rd | 4 man/is.loop.Rd | 4 man/is.matching.Rd | 4 man/is.maximal.matching.Rd | 4 man/is.minimal.separator.Rd | 4 man/is.multiple.Rd | 4 man/is.mutual.Rd | 4 man/is.separator.Rd | 4 man/is.simple.Rd | 4 man/is_acyclic.Rd | 6 man/is_biconnected.Rd | 7 man/is_complete.Rd | 6 man/is_dag.Rd | 6 man/is_degseq.Rd | 4 man/is_directed.Rd | 4 man/is_forest.Rd | 6 man/is_graphical.Rd | 6 man/is_min_separator.Rd | 6 man/is_separator.Rd | 6 man/is_tree.Rd | 6 man/isomorphic.Rd | 4 man/isomorphism_class.Rd | 4 man/isomorphisms.Rd | 25 man/ivs.Rd | 6 man/k.regular.game.Rd | 4 man/k_shortest_paths.Rd | 12 man/knn.Rd | 6 man/label.propagation.community.Rd | 4 man/laplacian_matrix.Rd | 6 man/largest.cliques.Rd | 4 man/largest.independent.vertex.sets.Rd | 4 man/lastcit.game.Rd | 4 man/layout.auto.Rd | 4 man/layout.bipartite.Rd | 4 man/layout.davidson.harel.Rd | 4 man/layout.drl.Rd | 4 man/layout.fruchterman.reingold.grid.Rd | 4 man/layout.gem.Rd | 4 man/layout.grid.Rd | 4 man/layout.mds.Rd | 4 man/layout.spring.Rd | 4 man/layout.star.Rd | 4 man/layout.sugiyama.Rd | 4 man/layout.svd.Rd | 4 man/layout_.Rd | 52 man/layout_as_bipartite.Rd | 4 man/layout_as_star.Rd | 4 man/layout_as_tree.Rd | 4 man/layout_in_circle.Rd | 4 man/layout_modifier.Rd |only man/layout_nicely.Rd | 4 man/layout_on_grid.Rd | 4 man/layout_on_sphere.Rd | 4 man/layout_randomly.Rd | 4 man/layout_with_dh.Rd | 4 man/layout_with_drl.Rd | 4 man/layout_with_fr.Rd | 4 man/layout_with_gem.Rd | 4 man/layout_with_kk.Rd | 4 man/layout_with_lgl.Rd | 4 man/layout_with_mds.Rd | 4 man/layout_with_sugiyama.Rd | 4 man/leading.eigenvector.community.Rd | 4 man/line.graph.Rd | 4 man/local_scan.Rd | 4 man/make_.Rd | 10 man/make_bipartite_graph.Rd | 8 man/make_chordal_ring.Rd | 14 man/make_circulant.Rd |only man/make_de_bruijn_graph.Rd | 8 man/make_empty_graph.Rd | 16 man/make_from_prufer.Rd | 10 man/make_full_bipartite_graph.Rd | 8 man/make_full_citation_graph.Rd | 14 man/make_full_graph.Rd | 14 man/make_full_multipartite.Rd |only man/make_graph.Rd | 10 man/make_kautz_graph.Rd | 8 man/make_lattice.Rd | 25 man/make_line_graph.Rd | 8 man/make_ring.Rd | 14 man/make_star.Rd | 14 man/make_tree.Rd | 10 man/make_turan.Rd |only man/make_wheel.Rd |only man/matching.Rd | 4 man/max_cardinality.Rd | 6 man/max_flow.Rd | 6 man/maximal.cliques.Rd | 4 man/maximal.cliques.count.Rd | 4 man/maximal.independent.vertex.sets.Rd | 4 man/maximal_ivs.Rd | 4 man/maximum.bipartite.matching.Rd | 4 man/maximum.cardinality.search.Rd | 4 man/merge_coords.Rd | 4 man/min_cut.Rd | 4 man/min_separators.Rd | 6 man/min_st_separators.Rd | 6 man/minimal.st.separators.Rd | 4 man/minimum.size.separators.Rd | 4 man/minimum.spanning.tree.Rd | 4 man/mod.matrix.Rd | 4 man/modularity.igraph.Rd | 4 man/motifs.Rd | 38 man/mst.Rd | 4 man/multilevel.community.Rd | 4 man/neighborhood.size.Rd | 4 man/neighbors.Rd | 4 man/normalize.Rd | 3 man/optimal.community.Rd | 4 man/page.rank.Rd | 4 man/page_rank.Rd | 6 man/path.Rd | 1 man/path.length.hist.Rd | 4 man/permute.Rd | 7 man/permute.vertices.Rd | 4 man/piecewise.layout.Rd | 4 man/plot.igraph.Rd | 4 man/plotHierarchy.Rd | 4 man/plus-.igraph.Rd | 1 man/power_centrality.Rd | 4 man/predict_edges.Rd | 4 man/preference.game.Rd | 8 man/print.igraph.Rd | 4 man/print.igraph.es.Rd | 4 man/print.igraph.vs.Rd | 4 man/radius.Rd | 6 man/random_walk.Rd | 6 man/read.graph.Rd | 4 man/read_graph.Rd | 6 man/realize_bipartite_degseq.Rd | 6 man/realize_degseq.Rd | 6 man/reciprocity.Rd | 6 man/rep.igraph.Rd | 5 man/reverse_edges.Rd | 7 man/rglplot.Rd | 4 man/running.mean.Rd | 4 man/running_mean.Rd | 4 man/sample_.Rd | 8 man/sample_bipartite.Rd | 4 man/sample_bipartite_gnm.Rd | 12 man/sample_chung_lu.Rd | 6 man/sample_correlated_gnp.Rd | 6 man/sample_correlated_gnp_pair.Rd | 6 man/sample_degseq.Rd | 4 man/sample_dirichlet.Rd | 4 man/sample_dot_product.Rd | 10 man/sample_fitness.Rd | 6 man/sample_fitness_pl.Rd | 11 man/sample_forestfire.Rd | 6 man/sample_gnm.Rd | 8 man/sample_gnp.Rd | 8 man/sample_grg.Rd | 8 man/sample_growing.Rd | 10 man/sample_hierarchical_sbm.Rd | 10 man/sample_hrg.Rd | 6 man/sample_islands.Rd | 6 man/sample_k_regular.Rd | 6 man/sample_last_cit.Rd | 32 man/sample_motifs.Rd | 4 man/sample_pa.Rd | 24 man/sample_pa_age.Rd | 23 man/sample_pref.Rd | 29 man/sample_sbm.Rd | 12 man/sample_seq.Rd | 4 man/sample_smallworld.Rd | 8 man/sample_spanning_tree.Rd | 6 man/sample_sphere_surface.Rd | 4 man/sample_sphere_volume.Rd | 4 man/sample_traits_callaway.Rd | 25 man/sample_tree.Rd | 6 man/sbm.game.Rd | 6 man/scan_stat.Rd | 4 man/set.edge.attribute.Rd | 4 man/set.vertex.attribute.Rd | 4 man/set_edge_attr.Rd | 4 man/set_vertex_attr.Rd | 4 man/set_vertex_attrs.Rd | 4 man/shortest.paths.Rd | 4 man/similarity.Rd | 6 man/similarity.dice.Rd | 4 man/similarity.invlogweighted.Rd | 4 man/similarity.jaccard.Rd | 4 man/simple_cycles.Rd | 35 man/simplify.Rd | 7 man/sir.Rd | 6 man/spinglass.community.Rd | 4 man/split_join_distance.Rd | 4 man/stCuts.Rd | 4 man/stMincuts.Rd | 4 man/st_cuts.Rd | 6 man/st_min_cuts.Rd | 6 man/static.fitness.game.Rd | 4 man/static.power.law.game.Rd | 9 man/stochastic_matrix.Rd | 4 man/strength.Rd | 6 man/sub-.igraph.Rd | 2 man/subcomponent.Rd | 4 man/subgraph.Rd | 4 man/subgraph.centrality.Rd | 4 man/subgraph.edges.Rd | 4 man/subgraph_centrality.Rd | 4 man/subgraph_isomorphic.Rd | 4 man/subgraph_isomorphisms.Rd | 31 man/tail_of.Rd | 4 man/tkplot.Rd | 4 man/tkplot.center.Rd | 4 man/tkplot.fit.to.screen.Rd | 4 man/tkplot.reshape.Rd | 4 man/tkplot.rotate.Rd | 4 man/tkplot.setcoords.Rd | 4 man/to_prufer.Rd | 6 man/topo_sort.Rd | 4 man/topological.sort.Rd | 4 man/transitive_closure.Rd |only man/transitivity.Rd | 4 man/triad.census.Rd | 4 man/triad_census.Rd | 6 man/unfold.tree.Rd | 4 man/unfold_tree.Rd | 4 man/union.Rd | 1 man/union.igraph.Rd | 5 man/upgrade_graph.Rd | 4 man/vertex.Rd | 1 man/vertex.connectivity.Rd | 4 man/vertex.disjoint.paths.Rd | 4 man/vertex_attr.Rd | 4 man/vertex_connectivity.Rd | 4 man/voronoi_cells.Rd | 6 man/walktrap.community.Rd | 4 man/watts.strogatz.game.Rd | 4 man/weighted_cliques.Rd | 6 man/which_multiple.Rd | 13 man/which_mutual.Rd | 6 man/write.graph.Rd | 4 man/write_graph.Rd | 6 src/Makevars.in | 2 src/Makevars.ucrt | 2 src/Makevars.win | 2 src/README.md | 61 src/cpp11.cpp | 1314 +- src/init.cpp | 8 src/rcallback.c |only src/rcallback.dd |only src/rinterface.c | 9127 +++++++++++++++++-- src/rinterface.h | 312 src/rinterface_extra.c | 2997 ++---- src/sources-glue-c.mk | 2 src/test_error_with_source.c |only src/test_error_with_source.dd |only src/vendor/cigraph/interfaces/functions.yaml | 18 src/vendor/cigraph/interfaces/types.yaml | 5 tests/testthat/_snaps/aaa-auto.md | 3689 +++++--- tests/testthat/_snaps/attributes.md | 20 tests/testthat/_snaps/centrality.md | 3 tests/testthat/_snaps/conversion.md | 315 tests/testthat/_snaps/error-formatting.md |only tests/testthat/_snaps/flow.md | 8 tests/testthat/_snaps/games.md | 10 tests/testthat/_snaps/motifs.md |only tests/testthat/_snaps/operators.md | 16 tests/testthat/_snaps/utils-assert-args.md | 2 tests/testthat/helper.R | 27 tests/testthat/test-aaa-auto.R | 9010 +++++++++++++++++-- tests/testthat/test-adjacency.R | 26 tests/testthat/test-assortativity.R | 29 tests/testthat/test-attributes.R | 28 tests/testthat/test-centrality.R | 20 tests/testthat/test-cliques.R | 116 tests/testthat/test-community.R | 30 tests/testthat/test-components.R | 3 tests/testthat/test-conversion.R | 179 tests/testthat/test-cycles.R | 65 tests/testthat/test-error-formatting.R |only tests/testthat/test-fit.R | 2 tests/testthat/test-flow.R | 40 tests/testthat/test-foreign.R | 24 tests/testthat/test-games.R | 20 tests/testthat/test-glet.R | 15 tests/testthat/test-hrg.R | 4 tests/testthat/test-incidence.R | 8 tests/testthat/test-interface.R | 50 tests/testthat/test-iterators.R | 4 tests/testthat/test-layout.R | 108 tests/testthat/test-make.R | 120 tests/testthat/test-minimum.spanning.tree.R | 5 tests/testthat/test-motifs.R | 92 tests/testthat/test-operators.R | 22 tests/testthat/test-other.R | 7 tests/testthat/test-plot.R | 2 tests/testthat/test-structural-properties.R | 101 tests/testthat/test-topology.R | 238 tests/testthat/test-utils-assert-args.R | 7 tests/testthat/test-versions.R | 18 vignettes/igraph.Rmd | 10 vignettes/igraph_ES.rmd | 36 656 files changed, 40340 insertions(+), 10644 deletions(-)
Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] ,
Florian De Boissieu [ctb] ,
Andrew Sanchez Meador [ctb] for
segment_snags),
Bourdon Jean-Francois [ctb] for
track_sensor),
Gatziolis Demetrios [ctb] for
track_sensor),
Leon Steinmeier [c [...truncated...]
Maintainer: Jean-Romain Roussel <info@r-lidar.com>
Diff between lidR versions 4.3.1 dated 2026-04-07 and 4.3.2 dated 2026-04-21
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/metrics_point.R | 14 +++++++------- src/LAS_point_metrics.cpp | 6 +++--- tests/testthat/test-classify_ground.R | 33 ++++++++++++++++++--------------- tests/testthat/test-metrics_points.R | 2 +- 7 files changed, 42 insertions(+), 35 deletions(-)
Title: Alt String Implementation
Description: Provides an extendable, performant and multithreaded 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph],
Phillip Hazel [ctb] ,
Zoltan Herczeg [ctb, cph] ,
University of Cambridge [cph] ,
Tilera Corporation [cph] ,
Yann Collet [ctb, cph]
Maintainer: Travers Ching <traversc@gmail.com>
Diff between stringfish versions 0.18.0 dated 2026-01-18 and 0.19.0 dated 2026-04-21
stringfish-0.18.0/stringfish/inst/extra_tests |only stringfish-0.18.0/stringfish/man/convert_to_sf.Rd |only stringfish-0.18.0/stringfish/src/sf_disabled.h |only stringfish-0.18.0/stringfish/tests/tests.cpp |only stringfish-0.18.0/stringfish/vignettes/bench_v2.png |only stringfish-0.19.0/stringfish/ChangeLog | 8 stringfish-0.19.0/stringfish/DESCRIPTION | 14 stringfish-0.19.0/stringfish/MD5 | 135 stringfish-0.19.0/stringfish/NAMESPACE | 14 stringfish-0.19.0/stringfish/R/RcppExports.R | 20 stringfish-0.19.0/stringfish/R/sf_functions.R | 89 stringfish-0.19.0/stringfish/R/zz_help_files.R | 188 - stringfish-0.19.0/stringfish/R/zzz.R | 2 stringfish-0.19.0/stringfish/README.md | 95 stringfish-0.19.0/stringfish/configure | 995 ++++++ stringfish-0.19.0/stringfish/configure.ac | 22 stringfish-0.19.0/stringfish/inst/doc/vignette.R | 4 stringfish-0.19.0/stringfish/inst/doc/vignette.html | 197 - stringfish-0.19.0/stringfish/inst/doc/vignette.rmd | 54 stringfish-0.19.0/stringfish/inst/include/rstring_indexer.h |only stringfish-0.19.0/stringfish/inst/include/sf_external.h | 188 - stringfish-0.19.0/stringfish/inst/include/sf_internal |only stringfish-0.19.0/stringfish/inst/include/sf_internal.h | 422 -- stringfish-0.19.0/stringfish/man/convert_to_sf_vector.Rd |only stringfish-0.19.0/stringfish/man/convert_to_slice_store.Rd |only stringfish-0.19.0/stringfish/man/get_string_type.Rd | 6 stringfish-0.19.0/stringfish/man/materialize.Rd | 2 stringfish-0.19.0/stringfish/man/random_strings.Rd | 17 stringfish-0.19.0/stringfish/man/sf_assign.Rd | 2 stringfish-0.19.0/stringfish/man/sf_collapse.Rd | 2 stringfish-0.19.0/stringfish/man/sf_compare.Rd | 4 stringfish-0.19.0/stringfish/man/sf_concat.Rd | 2 stringfish-0.19.0/stringfish/man/sf_ends.Rd | 2 stringfish-0.19.0/stringfish/man/sf_grepl.Rd | 5 stringfish-0.19.0/stringfish/man/sf_gsub.Rd | 5 stringfish-0.19.0/stringfish/man/sf_iconv.Rd | 2 stringfish-0.19.0/stringfish/man/sf_match.Rd | 2 stringfish-0.19.0/stringfish/man/sf_nchar.Rd | 2 stringfish-0.19.0/stringfish/man/sf_paste.Rd | 2 stringfish-0.19.0/stringfish/man/sf_readLines.Rd | 2 stringfish-0.19.0/stringfish/man/sf_split.Rd | 2 stringfish-0.19.0/stringfish/man/sf_starts.Rd | 2 stringfish-0.19.0/stringfish/man/sf_substr.Rd | 2 stringfish-0.19.0/stringfish/man/sf_tolower.Rd | 2 stringfish-0.19.0/stringfish/man/sf_toupper.Rd | 2 stringfish-0.19.0/stringfish/man/sf_trim.Rd | 2 stringfish-0.19.0/stringfish/man/sf_vector.Rd | 9 stringfish-0.19.0/stringfish/man/sf_vector_create.Rd |only stringfish-0.19.0/stringfish/man/sf_writeLines.Rd | 6 stringfish-0.19.0/stringfish/man/slice_store_create.Rd |only stringfish-0.19.0/stringfish/man/slice_store_create_with_size.Rd |only stringfish-0.19.0/stringfish/man/string_identical.Rd | 15 stringfish-0.19.0/stringfish/src/Makevars.in | 2 stringfish-0.19.0/stringfish/src/Makevars.win | 6 stringfish-0.19.0/stringfish/src/PCRE2_wrapper/pcre2_wrapper.cpp | 111 stringfish-0.19.0/stringfish/src/PCRE2_wrapper/pcre2_wrapper.h | 17 stringfish-0.19.0/stringfish/src/RcppExports.cpp | 66 stringfish-0.19.0/stringfish/src/exported_functions |only stringfish-0.19.0/stringfish/src/sf_altrep |only stringfish-0.19.0/stringfish/src/sf_altrep.h | 388 -- stringfish-0.19.0/stringfish/src/sf_encoding_helpers.h |only stringfish-0.19.0/stringfish/src/sf_functions.cpp | 1621 ---------- stringfish-0.19.0/stringfish/src/sf_utility.h |only stringfish-0.19.0/stringfish/tests/regressions.R |only stringfish-0.19.0/stringfish/tests/tests.R | 286 - stringfish-0.19.0/stringfish/vignettes/bench_v3.png |only stringfish-0.19.0/stringfish/vignettes/vignette.rmd | 54 67 files changed, 2221 insertions(+), 2876 deletions(-)
Title: Enhances Interaction with 'ODBC' Databases
Description: Provides simple and powerful interfaces that facilitate interaction
with 'ODBC' data sources. Each data source gets its own unique and dedicated
interface, wrapped around 'RODBC'. Communication settings are remembered
between queries, and are managed silently in the background. The interfaces
support multi-statement 'SQL' scripts, which can be parameterised via
metaprogramming structures and embedded 'R' expressions.
Author: Mike Lee [aut, cre]
Maintainer: Mike Lee <random.deviate@gmail.com>
Diff between SQRL versions 1.0.2 dated 2023-12-02 and 1.0.3 dated 2026-04-21
ChangeLog | 11 DESCRIPTION | 12 MD5 | 20 R/SQRL.R | 2713 +++++++++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/SQRL_primer.Rnw | 4 inst/doc/SQRL_primer.pdf |binary man/sqrlParams.Rd | 12 man/sqrlScript.Rd | 56 man/sqrlUsage.Rd | 6 vignettes/SQRL_primer.Rnw | 4 11 files changed, 1693 insertions(+), 1145 deletions(-)
Title: Location Identify Tool
Description: Determine the sea area where the fishing boat operates.
The latitude and longitude of geographic coordinates are used to match oceanic areas and economic sea areas.
You can plot the distribution map with dotplot() function.
Please refer to Flanders Marine Institute (2020) <doi:10.14284/403>.
Author: shiao chih hao [aut, cre, ctb],
chang shu ting [aut, ctb],
wang shyh jiun [aut, ctb]
Maintainer: shiao chih hao <chihhao@ofdc.org.tw>
Diff between oceanic versions 0.1.8 dated 2025-01-09 and 0.1.9 dated 2026-04-21
oceanic-0.1.8/oceanic/R/idfcode.R |only oceanic-0.1.8/oceanic/R/idfland.R |only oceanic-0.1.8/oceanic/R/idfport.R |only oceanic-0.1.8/oceanic/R/sixtytoten.R |only oceanic-0.1.8/oceanic/data/port_sf.rda |only oceanic-0.1.8/oceanic/man/idfcode.Rd |only oceanic-0.1.8/oceanic/man/idfland.Rd |only oceanic-0.1.8/oceanic/man/idfport.Rd |only oceanic-0.1.8/oceanic/man/port_sf.Rd |only oceanic-0.1.8/oceanic/man/sixtytoten.Rd |only oceanic-0.1.9/oceanic/DESCRIPTION | 15 +++---- oceanic-0.1.9/oceanic/MD5 | 29 ++++--------- oceanic-0.1.9/oceanic/NAMESPACE | 25 ++++------- oceanic-0.1.9/oceanic/R/data.R | 35 ++++++++++------ oceanic-0.1.9/oceanic/R/idfeez.R | 67 +++++++++++++++----------------- oceanic-0.1.9/oceanic/R/idfocean.R | 60 +++++++++++++--------------- oceanic-0.1.9/oceanic/R/sysdata.rda |only oceanic-0.1.9/oceanic/data/eez_rg.rda |binary oceanic-0.1.9/oceanic/man/eez_rg.Rd | 27 +++++++++++- oceanic-0.1.9/oceanic/man/idfeez.Rd | 4 - oceanic-0.1.9/oceanic/man/idfocean.Rd | 7 +-- 21 files changed, 141 insertions(+), 128 deletions(-)
Title: L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
Description: Extensive functions for Lmoments (LMs) and probability-weighted moments (PWMs),
distribution parameter estimation, LMs for distributions, LM ratio diagrams, multivariate
Lcomoments, and asymmetric (asy) trimmed LMs (TLMs). Maximum likelihood and
maximum product spacings estimation are available. Right-tail and left-tail LM censoring
by threshold or indicator variable are available. LMs of residual (resid) and reversed
(rev) residual life are implemented along with 13 quantile operators for reliability analyses.
Exact analytical bootstrap estimates of order statistics, LMs, and LM var-covars are available.
Harri-Coble Tau34-squared Normality Test is available. Distributions with L, TL, and added
(+) support for right-tail censoring (RC) encompass: Asy Exponential (Exp) Power [L],
Asy Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen) Exp
Poisson [L], Gen Extreme Value [L], Gen Lambda [L, TL], Gen Logistic [L], Gen Normal [L],
Gen Pareto [L+RC, TL], Govindara [...truncated...]
Author: William Asquith [aut, cre]
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between lmomco versions 2.5.3 dated 2025-09-24 and 2.5.5 dated 2026-04-21
lmomco-2.5.3/lmomco/R/pp.stable.R |only lmomco-2.5.3/lmomco/inst/doc/benford |only lmomco-2.5.5/lmomco/DESCRIPTION | 10 +- lmomco-2.5.5/lmomco/MD5 | 54 +++++------ lmomco-2.5.5/lmomco/NAMESPACE | 7 + lmomco-2.5.5/lmomco/NEWS | 45 ++++++++- lmomco-2.5.5/lmomco/R/lmrdia.R | 89 +++++++++++------- lmomco-2.5.5/lmomco/R/lmrdia46.R | 44 ++++++++- lmomco-2.5.5/lmomco/R/pargev.R | 128 +++++++++++++++++---------- lmomco-2.5.5/lmomco/R/pargno.R | 76 ++++++++++------ lmomco-2.5.5/lmomco/R/parpe3.R | 85 +++++++++++------ lmomco-2.5.5/lmomco/R/plotlmrdia.R | 22 +++- lmomco-2.5.5/lmomco/R/plotlmrdia46.R | 28 ++++- lmomco-2.5.5/lmomco/R/theoTLmoms.R | 10 +- lmomco-2.5.5/lmomco/build/partial.rdb |binary lmomco-2.5.5/lmomco/inst/ACKNOWLEDGEMENTS | 5 - lmomco-2.5.5/lmomco/inst/doc/references.txt | 74 +++++++-------- lmomco-2.5.5/lmomco/inst/doc/t4t6/tau4tau6.R | 1 lmomco-2.5.5/lmomco/inst/newcoes |only lmomco-2.5.5/lmomco/man/lmomco-package.Rd | 9 - lmomco-2.5.5/lmomco/man/lmomgdd.Rd | 8 - lmomco-2.5.5/lmomco/man/lmrdia.Rd | 29 +++++- lmomco-2.5.5/lmomco/man/lmrdia46.Rd | 15 ++- lmomco-2.5.5/lmomco/man/pargev.Rd | 17 +++ lmomco-2.5.5/lmomco/man/pargno.Rd | 31 +++++- lmomco-2.5.5/lmomco/man/parpe3.Rd | 20 ++++ lmomco-2.5.5/lmomco/man/plotlmrdia.Rd | 6 - lmomco-2.5.5/lmomco/man/plotlmrdia46.Rd | 3 28 files changed, 557 insertions(+), 259 deletions(-)
Title: Kinship Analysis with Linked Markers
Description: A 'shiny' application for forensic kinship testing, based on
the 'pedsuite' R packages. 'KLINK' is closely aligned with the (non-R)
software 'Familias' and 'FamLink', but offers several unique features,
including visualisations and automated report generation. The
calculation of likelihood ratios supports pairs of linked markers, and
all common mutation models.
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between KLINK versions 1.1.0 dated 2025-05-12 and 1.2.0 dated 2026-04-21
KLINK-1.1.0/KLINK/data/LINKAGEMAP.rda |only KLINK-1.1.0/KLINK/inst/shiny/R/tooltips.R |only KLINK-1.1.0/KLINK/man/LINKAGEMAP.Rd |only KLINK-1.2.0/KLINK/DESCRIPTION | 15 +- KLINK-1.2.0/KLINK/MD5 | 38 +++---- KLINK-1.2.0/KLINK/NAMESPACE | 3 KLINK-1.2.0/KLINK/NEWS.md | 20 +++ KLINK-1.2.0/KLINK/R/KLINK-package.R | 1 KLINK-1.2.0/KLINK/R/data.R | 10 - KLINK-1.2.0/KLINK/R/karyo.R | 69 +++++++++--- KLINK-1.2.0/KLINK/R/linkedLR.R | 2 KLINK-1.2.0/KLINK/R/loadMap.R | 39 +++++-- KLINK-1.2.0/KLINK/R/markerSummary.R | 8 - KLINK-1.2.0/KLINK/R/utils.R | 2 KLINK-1.2.0/KLINK/R/writeResult.R | 86 +-------------- KLINK-1.2.0/KLINK/README.md | 2 KLINK-1.2.0/KLINK/inst/shiny/R/utils.R | 43 +++++++ KLINK-1.2.0/KLINK/inst/shiny/app.R | 130 +++++++++++++++++------- KLINK-1.2.0/KLINK/inst/shiny/help |only KLINK-1.2.0/KLINK/inst/shiny/www/custom.css | 4 KLINK-1.2.0/KLINK/man/figures/screenshot120.png |only KLINK-1.2.0/KLINK/man/loadMap.Rd | 4 22 files changed, 290 insertions(+), 186 deletions(-)
Title: Parallel GLM
Description: Provides a parallel estimation method for generalized linear
models without compiling with a multithreaded LAPACK or BLAS.
Author: Benjamin Christoffersen [aut] ,
Anthony Williams [cph],
Boost developers [cph],
Tom Palmer [aut, cre]
Maintainer: Tom Palmer <remlapmot@hotmail.com>
This is a re-admission after prior archival of version 0.1.7 dated 2021-10-14
Diff between parglm versions 0.1.7 dated 2021-10-14 and 0.1.8 dated 2026-04-21
.aspell |only DESCRIPTION | 51 ++++++++++++++++++++++++-------------------------- MD5 | 22 +++++++++++---------- NEWS.md | 9 +++++++- R/parglm.R | 21 +++++--------------- README.md | 15 ++++++-------- build/vignette.rds |binary inst/WORDLIST |only man/parglm.Rd | 48 ++++++++++++++++++++++++++++++++--------------- man/parglm.control.Rd | 20 ++++++++++--------- src/LAPACK_wrappers.h | 2 - src/Makevars | 1 src/Makevars.win |only src/thread_pool.h | 4 +-- 14 files changed, 106 insertions(+), 87 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/>, binary (.gt3x) and .csv-export data from 'Actigraph' <https://ametris.com/> devices, and binary (.cwa) and .csv-export data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre],
Jairo H Migueles [aut] ,
Severine Sabia [ctb],
Matthew R Patterson [ctb],
Zhou Fang [ctb],
Joe Heywood [ctb],
Joan Capdevila Pujol [ctb],
Lena Kushleyeva [ctb],
Mathilde Chen [ctb],
Manasa Yerramalla [ctb],
Patrick Bos [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIR versions 3.3-4 dated 2026-01-27 and 3.3-6 dated 2026-04-21
GGIR-3.3-4/GGIR/tests/testthat/test_chainof5parts.R |only GGIR-3.3-6/GGIR/DESCRIPTION | 12 GGIR-3.3-6/GGIR/MD5 | 68 +-- GGIR-3.3-6/GGIR/NEWS.md | 24 + GGIR-3.3-6/GGIR/R/check_params.R | 5 GGIR-3.3-6/GGIR/R/detectEventBouts.R | 103 ++-- GGIR-3.3-6/GGIR/R/g.analyse.avday.R | 2 GGIR-3.3-6/GGIR/R/g.impute.R | 354 ++++++++-------- GGIR-3.3-6/GGIR/R/g.part6.R | 4 GGIR-3.3-6/GGIR/R/g.report.part4.R | 12 GGIR-3.3-6/GGIR/R/g.report.part5.R | 7 GGIR-3.3-6/GGIR/R/g.report.part5_dictionary.R | 9 GGIR-3.3-6/GGIR/R/load_params.R | 2 GGIR-3.3-6/GGIR/build/vignette.rds |binary GGIR-3.3-6/GGIR/inst/doc/ExternalFunction.Rmd | 2 GGIR-3.3-6/GGIR/inst/doc/ExternalFunction.html | 2 GGIR-3.3-6/GGIR/inst/doc/GGIRParameters.Rmd | 3 GGIR-3.3-6/GGIR/inst/doc/GGIRParameters.html | 201 ++++----- GGIR-3.3-6/GGIR/inst/doc/GGIRoutput.Rmd | 6 GGIR-3.3-6/GGIR/inst/doc/GGIRoutput.html | 15 GGIR-3.3-6/GGIR/inst/doc/StepCadenceAnalysis.Rmd | 6 GGIR-3.3-6/GGIR/inst/doc/StepCadenceAnalysis.html | 11 GGIR-3.3-6/GGIR/inst/doc/readmyacccsv.Rmd | 2 GGIR-3.3-6/GGIR/inst/doc/readmyacccsv.html | 8 GGIR-3.3-6/GGIR/man/GGIR-package.Rd | 4 GGIR-3.3-6/GGIR/man/GGIR.Rd | 15 GGIR-3.3-6/GGIR/tests/testthat/test_StudyDatesFile.R | 65 ++ GGIR-3.3-6/GGIR/tests/testthat/test_detectEventBouts.R | 19 GGIR-3.3-6/GGIR/tests/testthat/test_integration.R |only GGIR-3.3-6/GGIR/tests/testthat/test_load_check_params.R | 2 GGIR-3.3-6/GGIR/tests/testthat/test_part6.R | 2 GGIR-3.3-6/GGIR/vignettes/ExternalFunction.Rmd | 2 GGIR-3.3-6/GGIR/vignettes/GGIRParameters.Rmd | 3 GGIR-3.3-6/GGIR/vignettes/GGIRoutput.Rmd | 6 GGIR-3.3-6/GGIR/vignettes/StepCadenceAnalysis.Rmd | 6 GGIR-3.3-6/GGIR/vignettes/readmyacccsv.Rmd | 2 36 files changed, 557 insertions(+), 427 deletions(-)
Title: Statistical Tools for the Analysis of Multi Environment
Agronomic Trials
Description: Provides tools for the analysis of multi-environment agronomic
trials, with a specific focus on plant breeding experiments.
Implements the Additive Main effects and Multiplicative Interaction
(AMMI) model (Gauch, 1992, ISBN:9780444892409) and the Site Regression
(SREG) model (Cornelius, 1996, <doi:10.1201/9780367802226>). To ensure
reliable results even with outliers or missing data, it includes robust
versions of AMMI (Rodrigues et al., 2016,
<doi:10.1093/bioinformatics/btv533>) and SREG (Angelini et al., 2022,
<doi:10.1080/15427528.2022.2051217>). Furthermore, the package offers
advanced imputation techniques for multi-environment data, covering
classical methodologies (Arciniegas-Alarcón et al., 2014,
<doi:10.2478/bile-2014-0006>) and recently published imputation methods
for MET data (Angelini et al., 2024, <doi:10.1007/s10681-024-03344-z>).
Author: Julia Angelini [aut, cre] ,
Marcos Prunello [aut] ,
Gerardo Cervigni [aut]
Maintainer: Julia Angelini <jangelini_93@hotmail.com>
Diff between geneticae versions 1.0.0 dated 2026-04-16 and 1.0.1 dated 2026-04-21
DESCRIPTION | 30 +++++------ MD5 | 52 +++++++++---------- NEWS.md | 10 ++- R/EM_AMMI.R | 2 R/EM_GGE.R | 10 --- R/Eigenvector.R | 47 +++++------------ R/W_GabrielEigen.R | 65 +++++++---------------- R/impute.R | 15 +++-- R/rAMMIModel.R | 74 +++++++++++++++++++++++---- R/rAMMIPlot.R | 61 ++++++++++++++++------ R/rSREGModel.R | 3 - R/rSREGPlot.R | 6 +- README.md | 55 ++++++++++++-------- inst/WORDLIST | 84 ++----------------------------- inst/doc/a-tutorial.Rmd | 69 +++++++++++-------------- inst/doc/a-tutorial.html | 48 ++++++++--------- inst/doc/b-shiny.html | 4 - man/EM.AMMI.Rd | 2 man/WGabriel.Rd | 4 - man/figures/README-unnamed-chunk-4-1.png |binary man/imputation.Rd | 15 +++-- man/rAMMIModel.Rd | 73 +++++++++++++++++++++++--- man/rAMMIPlot.Rd | 62 ++++++++++++++++------ man/rSREGModel.Rd | 2 man/rSREGPlot.Rd | 6 +- tests/spelling.R | 2 vignettes/a-tutorial.Rmd | 69 +++++++++++-------------- 27 files changed, 463 insertions(+), 407 deletions(-)
Title: Data and Code for Empirical Research in Accounting
Description: Handy functions and data to support the course book 'Empirical Research in Accounting: Tools and Methods' (1st ed.). Chapman and Hall/CRC. <doi:10.1201/9781003456230> and <https://iangow.github.io/far_book/>.
Author: Ian Gow [aut, cre]
Maintainer: Ian Gow <iandgow@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2025-11-17
Diff between farr versions 1.0.0 dated 2025-11-17 and 1.0.1 dated 2026-04-21
DESCRIPTION | 6 ++--- MD5 | 26 ++++++++++++----------- NAMESPACE | 1 NEWS.md | 4 ++- R/duckdb_to_parquet.R |only R/get_ff_ind.R | 4 +-- R/get_me_breakpoints.R | 2 + R/get_size_rets_monthly.R | 8 +++---- build/partial.rdb |binary inst/WORDLIST | 35 +++++++++++++++++++++++++++---- man/duckdb_to_parquet.Rd |only man/get_ff_ind.Rd | 4 +-- man/get_me_breakpoints.Rd | 2 + tests/testthat/test-get_ff_ind.R | 2 + tests/testthat/test-get_me_breakpoints.R | 6 +++-- 15 files changed, 70 insertions(+), 30 deletions(-)
More information about rjd3production at CRAN
Permanent link
Title: Prompt Large Language Models and Enhance Their Functionality
Description: Easily construct prompts and associated logic for interacting with
large language models (LLMs).
'tidyprompt' introduces the concept of prompt wraps, which are building
blocks that you can use to quickly turn a simple prompt into a complex
one. Prompt wraps do not just modify the prompt text, but also add
extraction and validation functions that will be applied to the response
of the LLM. This ensures that the user gets the desired output.
'tidyprompt' can add various features to prompts and their evaluation
by LLMs, such as structured output, automatic feedback, retries, reasoning
modes, autonomous R function calling, and R code generation and evaluation.
It is designed to be compatible with any LLM provider that offers
chat completion.
Author: Luka Koning [aut, cre, cph],
Tjark Van de Merwe [aut, cph],
Kennispunt Twente [fnd]
Maintainer: Luka Koning <koningluka@gmail.com>
Diff between tidyprompt versions 0.3.0 dated 2025-11-30 and 0.4.0 dated 2026-04-21
DESCRIPTION | 18 MD5 | 151 ++- NAMESPACE | 2 NEWS.md | 248 +++-- R/answer_as_dataframe.R |only R/answer_as_json.R | 14 R/answer_as_numeric.R |only R/answer_using_r.R | 19 R/answer_using_sql.R | 5 R/answer_using_tools.R | 247 ++++- R/chat_history.R | 10 R/helper_ellmer_json_compatibility.R | 193 +++- R/helper_ellmer_tool_compatibility.R | 254 ++++-- R/internal_extraction.R | 2 R/internal_request_llm_provider.R | 58 + R/internal_test_helpers.R | 2 R/llm_break.R | 2 R/llm_provider.R | 68 + R/llm_providers.R | 761 ++++++++++++++++-- R/misc_add_image.R | 76 - R/misc_llm_verify.R | 2 R/misc_quit_if.R | 2 R/persistent_chat.R | 6 R/send_prompt.R | 128 ++- R/tidyprompt.R | 12 README.md | 21 inst/doc/getting_started.Rmd | 799 +++++++++---------- inst/doc/getting_started.html | 16 inst/examples/answer_as_dataframe.R |only inst/examples/answer_as_numeric.R |only inst/examples/send_prompt.R | 4 inst/examples/skim_with_labels_and_levels.R | 16 man/add_image.Rd | 9 man/add_text.Rd | 2 man/answer_as_boolean.Rd | 4 man/answer_as_category.Rd | 4 man/answer_as_dataframe.Rd |only man/answer_as_integer.Rd | 4 man/answer_as_json.Rd | 4 man/answer_as_list.Rd | 4 man/answer_as_multi_category.Rd | 4 man/answer_as_named_list.Rd | 4 man/answer_as_numeric.Rd |only man/answer_as_regex_match.Rd | 4 man/answer_as_text.Rd | 4 man/answer_by_chain_of_thought.Rd | 2 man/answer_by_react.Rd | 2 man/answer_using_r.Rd | 2 man/answer_using_sql.Rd | 2 man/answer_using_tools.Rd | 16 man/chat_history.Rd | 2 man/llm_provider_ellmer.Rd | 11 man/prompt_wrap.Rd | 2 man/quit_if.Rd | 2 man/send_prompt.Rd | 28 man/set_system_prompt.Rd | 2 man/skim_with_labels_and_levels.Rd | 16 man/tidyprompt-package.Rd | 2 man/tools_add_docs.Rd | 4 man/tools_get_docs.Rd | 422 +++++----- tests/testthat/helper-ellmer.R | 69 + tests/testthat/test-answer-as-json.R | 66 + tests/testthat/test-answer_as_dataframe.R |only tests/testthat/test-answer_as_numeric.R |only tests/testthat/test-answer_using_tools.R | 385 +++++++++ tests/testthat/test-chat_history.R | 13 tests/testthat/test-ellmer_add_image.R | 112 ++ tests/testthat/test-ellmer_builtin_tool.R |only tests/testthat/test-ellmer_clone_semantics.R |only tests/testthat/test-ellmer_json_compatibility.R | 46 + tests/testthat/test-ellmer_param_warning.R |only tests/testthat/test-ellmer_streaming.R | 1 tests/testthat/test-ellmer_streaming_harden.R |only tests/testthat/test-ellmer_structured_native.R |only tests/testthat/test-ellmer_tool_compatibility.R | 151 +++ tests/testthat/test-ellmer_tool_optional_args.R |only tests/testthat/test-ellmer_tool_scope.R |only tests/testthat/test-ellmer_turn_construction.R |only tests/testthat/test-ellmer_type_from_schema.R |only tests/testthat/test-general.R | 3 tests/testthat/test-llm_provider.R | 140 +++ tests/testthat/test-llm_provider_ellmer_multimodal.R | 103 ++ tests/testthat/test-persistent_chat_ellmer.R |only tests/testthat/test-request_llm_provider.R |only tests/testthat/test-send_prompt.R | 545 ++++++++++++ vignettes/getting_started.Rmd | 799 +++++++++---------- 86 files changed, 4512 insertions(+), 1619 deletions(-)
Title: Hierarchical and Variation Partitioning for Canonical Analysis
Description: This function conducts variation partitioning and hierarchical partitioning to calculate the unique, shared (referred as to "common") and individual contributions of each predictor (or matrix) towards explained variation (R-square and adjusted R-square) on canonical analysis (RDA,CCA and db-RDA), applying the algorithm of Lai J.,Zou Y., Zhang J.,Peres-Neto P.(2022) Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package.Methods in Ecology and Evolution,13: 782-788 <DOI:10.1111/2041-210X.13800>.
Author: Jiangshan Lai [aut, cre] ,
Kim Nimon [aut],
Yao Liu [aut],
Pedro Peres-Neto [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between rdacca.hp versions 1.1-2 dated 2026-04-05 and 1.1-3 dated 2026-04-21
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- R/rdacca.hp.r | 21 +++++++++++++++++---- man/rdacca.hp.Rd | 3 +++ 4 files changed, 28 insertions(+), 11 deletions(-)
More information about nordstatExtras at CRAN
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