Fri, 26 Feb 2021

Package recommenderlab updated to version 0.2-7 with previous version 0.2-6 dated 2020-06-17

Title: Lab for Developing and Testing Recommender Algorithms
Description: Provides a research infrastructure to test and develop recommender algorithms including UBCF, IBCF, FunkSVD and association rule-based algorithms.
Author: Michael Hahsler [aut, cre, cph], Bregt Vereet [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between recommenderlab versions 0.2-6 dated 2020-06-17 and 0.2-7 dated 2021-02-26

 DESCRIPTION                      |   10 +++---
 MD5                              |   44 +++++++++++++--------------
 NAMESPACE                        |    1 
 NEWS.md                          |   16 ++++++++++
 R/AllGenerics.R                  |    3 +
 R/RECOM_UBCF.R                   |   42 +++++++++++---------------
 R/calcPredictionAccuracy.R       |   21 +++++++++----
 R/evaluate.R                     |    8 +++--
 R/evaluationResultList.R         |   10 +++---
 R/evaluationResults.R            |   11 +++++-
 R/plot.R                         |   43 ++++++++++++++-------------
 README.md                        |    9 ++---
 build/vignette.rds               |binary
 data/MovieLense.rda              |binary
 inst/doc/recommenderlab.R        |   62 +++++++++++++++++++--------------------
 inst/doc/recommenderlab.Rnw      |   29 ++++++++----------
 inst/doc/recommenderlab.pdf      |binary
 man/MovieLense.Rd                |    9 ++++-
 man/calcPredictionAccuracy.Rd    |   19 ++++++-----
 man/evaluate.Rd                  |   54 ++++++++++++++++++++++++---------
 man/evaluationResults-class.Rd   |    9 +++--
 tests/testthat/test-RECOM_UBCF.R |    2 -
 vignettes/recommenderlab.Rnw     |   29 ++++++++----------
 23 files changed, 248 insertions(+), 183 deletions(-)

More information about recommenderlab at CRAN
Permanent link

Package broom.helpers updated to version 1.2.1 with previous version 1.2.0 dated 2021-02-22

Title: Helpers for Model Coefficients Tibbles
Description: Provides suite of functions to work with regression model 'broom::tidy()' tibbles. The suite includes functions to group regression model terms by variable, insert reference and header rows for categorical variables, add variable labels, and more.
Author: Joseph Larmarange [aut, cre] (<https://orcid.org/0000-0001-7097-700X>), Daniel D. Sjoberg [aut] (<https://orcid.org/0000-0003-0862-2018>)
Maintainer: Joseph Larmarange <joseph@larmarange.net>

Diff between broom.helpers versions 1.2.0 dated 2021-02-22 and 1.2.1 dated 2021-02-26

 DESCRIPTION                                          |    8 
 MD5                                                  |   42 +--
 NEWS.md                                              |   10 
 R/model_get_n.R                                      |    1 
 R/model_list_terms_levels.R                          |    8 
 R/select_utilities.R                                 |    2 
 R/tidy_add_term_labels.R                             |   33 ++
 R/tidy_plus_plus.R                                   |    2 
 inst/doc/tidy.html                                   |  216 +++++++++----------
 man/model_list_terms_levels.Rd                       |    1 
 man/tidy_plus_plus.Rd                                |    2 
 tests/testthat/test-add_coefficients_type.R          |    2 
 tests/testthat/test-add_contrasts.R                  |    2 
 tests/testthat/test-add_estimate_to_reference_rows.R |    3 
 tests/testthat/test-add_n.R                          |   10 
 tests/testthat/test-add_term_labels.R                |   45 +++
 tests/testthat/test-add_variable_labels.R            |    2 
 tests/testthat/test-disambiguate_terms.R             |    2 
 tests/testthat/test-identify_variables.R             |    2 
 tests/testthat/test-model_get_n.R                    |    6 
 tests/testthat/test-select_helpers.R                 |    3 
 tests/testthat/test-tidy_plus_plus.R                 |   26 ++
 22 files changed, 284 insertions(+), 144 deletions(-)

More information about broom.helpers at CRAN
Permanent link

Package tablet updated to version 0.2.7 with previous version 0.2.6 dated 2021-02-21

Title: Tabulate Descriptive Statistics in Multiple Formats
Description: Creates a table of descriptive statistics for factor and numeric columns in a data frame. Displays these by groups, if any. Highly customizable, with support for 'html' and 'pdf' provided by 'kableExtra'. Respects original column order, column labels, and factor level order. See ?tablet.data.frame and vignettes.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>

Diff between tablet versions 0.2.6 dated 2021-02-21 and 0.2.7 dated 2021-02-26

 DESCRIPTION                            |    6 -
 MD5                                    |    8 -
 R/tablet.R                             |    2 
 inst/doc/tablet-introduction-html.html |  188 +++++++++++----------------------
 inst/doc/tablet-introduction-pdf.pdf   |binary
 5 files changed, 71 insertions(+), 133 deletions(-)

More information about tablet at CRAN
Permanent link

New package rgeoda with initial version 0.0.8
Package: rgeoda
Type: Package
Title: R Library for Spatial Data Analysis
Version: 0.0.8
Date: 2021-02-24
Authors@R: c(person(given = "Xun", family = "Li", email="lixun910@gmail.com", role=c("aut","cre")), person(given = "Luc", family = "Anselin", email="anselin@uchicago.edu", role="aut"))
Maintainer: Xun Li <lixun910@gmail.com>
Description: Provides spatial data analysis functionalities including Exploratory Spatial Data Analysis, Spatial Cluster Detection and Clustering Analysis, Regionalization, etc. based on the C++ source code of 'GeoDa', which is an open-source software tool that serves as an introduction to spatial data analysis. The 'GeoDa' software and its documentation are available at <https://geodacenter.github.io>.
URL: https://github.com/geodacenter/rgeoda/, https://geodacenter.github.io/rgeoda/
BugReports: https://github.com/geodacenter/rgeoda/issues/
Depends: R (>= 4.0.0), methods, digest
License: GPL (>= 2)
Collate: init.R rgeoda.R sf_geoda.R RcppExports.R read_geoda.R weights.R utils.R lisa.R clustering.R
Imports: wkb, sf, Rcpp (>= 1.0.1)
LinkingTo: Rcpp, BH
RoxygenNote: 7.1.1
Encoding: UTF-8
Suggests: sp
SystemRequirements: C++14
NeedsCompilation: yes
Packaged: 2021-02-25 03:53:45 UTC; xun
Author: Xun Li [aut, cre], Luc Anselin [aut]
Repository: CRAN
Date/Publication: 2021-02-26 21:40:02 UTC

More information about rgeoda at CRAN
Permanent link

New package rangeMapper with initial version 2.0.2
Package: rangeMapper
Version: 2.0.2
Authors@R: c( person("Mihai", "Valcu", ,"valcu@orn.mpg.de", c("aut", "cre"), comment = c(ORCID = '0000-0002-6907-7802') ), person("James", "Dale", , "J.Dale@massey.ac.nz", "aut", comment = c( ORCID = '0000-0001-5950-5829') ), person("Joan", "Maspons", role = "ctb") )
Title: A Platform for the Study of Macro-Ecology of Life History Traits
Depends: R (>= 3.5.0)
Imports: graphics, methods, glue, future, future.apply, progressr, sf, RSQLite, DBI, magrittr, data.table, raster, exactextractr
Suggests: testthat, knitr, ggplot2, viridis, rmarkdown, pkgdown, nlme, igraph, spdep
Description: Tools for generation of (life-history) traits and diversity maps on hexagonal or square grids. Valcu et al.(2012) <doi:10.1111/j.1466-8238.2011.00739.x>.
LazyData: true
License: GPL (>= 2)
URL: https://github.com/mpio-be/rangeMapper
BugReports: https://github.com/mpio-be/rangeMapper/issues
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2021-02-25 17:50:15 UTC; mihai
Author: Mihai Valcu [aut, cre] (<https://orcid.org/0000-0002-6907-7802>), James Dale [aut] (<https://orcid.org/0000-0001-5950-5829>), Joan Maspons [ctb]
Maintainer: Mihai Valcu <valcu@orn.mpg.de>
Repository: CRAN
Date/Publication: 2021-02-26 21:40:07 UTC

More information about rangeMapper at CRAN
Permanent link

Package microsynth updated to version 2.0.31 with previous version 2.0.17 dated 2021-01-12

Title: Synthetic Control Methods with Micro- And Meso-Level Data
Description: A generalization of the 'Synth' package that is designed for data at a more granular level (e.g., micro-level). Provides functions to construct weights (including propensity score-type weights) and run analyses for synthetic control methods with micro- and meso-level data; see Robbins, Saunders, and Kilmer (2017) <doi:10.1080/01621459.2016.1213634> and Robbins and Davenport (2021) <doi:10.18637/jss.v097.i02>.
Author: Michael Robbins [aut, cre], Steven Davenport [aut]
Maintainer: Michael Robbins <mrobbins@rand.org>

Diff between microsynth versions 2.0.17 dated 2021-01-12 and 2.0.31 dated 2021-02-26

 DESCRIPTION                                   |    8 +-
 MD5                                           |   28 ++++-----
 NEWS.md                                       |   11 +++
 R/microsynth-class.R                          |    8 +-
 R/microsynth.R                                |   60 +++++++++++++-------
 R/plot_microsynth.R                           |   76 +++++++++++++-------------
 R/results.r                                   |   34 ++++++-----
 R/weights.R                                   |   29 +++++----
 inst/doc/aggregating_variables_over_time.html |    4 -
 inst/doc/ensuring_model_feasibility.Rmd       |    2 
 inst/doc/ensuring_model_feasibility.html      |    6 +-
 inst/doc/introduction.html                    |    4 -
 man/microsynth.Rd                             |   14 ++--
 man/plot_microsynth.Rd                        |    2 
 vignettes/ensuring_model_feasibility.Rmd      |    2 
 15 files changed, 161 insertions(+), 127 deletions(-)

More information about microsynth at CRAN
Permanent link

Package mdgc updated to version 0.1.2 with previous version 0.1.1 dated 2021-02-17

Title: Missing Data Imputation Using Gaussian Copulas
Description: Provides functions to impute missing values using Gaussian copulas for mixed data types as described by Christoffersen et al. (2021) <arXiv:2102.02642>. The method is related to Hoff (2007) <doi:10.1214/07-AOAS107> and Zhao and Udell (2019) <arXiv:1910.12845> but differs by making a direct approximation of the log marginal likelihood using an extended version of the Fortran code created by Genz and Bretz (2002) <doi:10.1198/106186002394> in addition to also support multinomial variables.
Author: Benjamin Christoffersen [cre, aut] (<https://orcid.org/0000-0002-7182-1346>), Alan Genz [cph], Frank Bretz [cph], Torsten Hothorn [cph], R-core [cph], Ross Ihaka [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>

Diff between mdgc versions 0.1.1 dated 2021-02-17 and 0.1.2 dated 2021-02-26

 DESCRIPTION                |    6 +++---
 MD5                        |   16 ++++++++--------
 R/mdgc.R                   |    4 ++--
 man/mdgc.Rd                |    2 +-
 man/mdgc_fit.Rd            |    2 +-
 src/RcppExports.cpp        |    4 ++--
 src/cpp-to-R.cpp           |    5 ++++-
 src/mvt.f                  |   16 ++++++++++++----
 src/openmp-exception_ptr.h |   24 +++++++++++++++++-------
 9 files changed, 50 insertions(+), 29 deletions(-)

More information about mdgc at CRAN
Permanent link

Package lefko3 updated to version 3.3.2 with previous version 3.3.1 dated 2021-02-23

Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Creates matrix population models for use in population ecological analyses. Specializes on the construction of historical matrices, which are 2d matrices comprising 3 consecutive times of demographic information. Estimates both raw and function-based forms of historical and standard ahistorical matrices. It also estimates function-based age-by-stage matrices. Methodology based on Ehrlen (2000) <doi:10.1890/0012-9658(2000)081[1675:TDOPPD]2.0.CO;2>.
Author: Richard P. Shefferson [aut, cre] (<https://orcid.org/0000-0002-5234-3131>), Johan Ehrlen [aut] (<https://orcid.org/0000-0001-8539-8967>)
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>

Diff between lefko3 versions 3.3.1 dated 2021-02-23 and 3.3.2 dated 2021-02-26

 DESCRIPTION                 |   12 +-
 MD5                         |   38 +++---
 NEWS                        |   10 +
 R/matrixcreation.R          |   12 +-
 R/modelselection.R          |  254 ++++++++++++++++++++++----------------------
 R/popchar.R                 |   38 ++++++
 inst/doc/Chapter1.html      |    2 
 inst/doc/Chapter2.Rmd       |   10 -
 inst/doc/Chapter2.html      |   10 -
 inst/doc/Chapter5.Rmd       |   12 +-
 inst/doc/Chapter5.html      |   12 +-
 inst/doc/Chapter6.Rmd       |   10 -
 inst/doc/Chapter6.html      |   10 -
 man/aflefko2.Rd             |    4 
 src/DataManagement.cpp      |  165 +++++++++++++++++-----------
 vignettes/Chapter2.Rmd      |   10 -
 vignettes/Chapter5.Rmd      |   12 +-
 vignettes/Chapter5.Rmd.orig |    2 
 vignettes/Chapter6.Rmd      |   10 -
 vignettes/Chapter6.Rmd.orig |    2 
 20 files changed, 358 insertions(+), 277 deletions(-)

More information about lefko3 at CRAN
Permanent link

Package edgedata updated to version 0.2.0 with previous version 0.1.0 dated 2020-04-24

Title: Datasets that Support the EDGE Server DIY Logic
Description: Datasets from most recent CCIIO DIY entry in a tidy format. These support the Centers for Medicare and Medicaid Services' (CMS) risk adjustment Do-It-Yourself (DIY) process, which allows health insurance issuers to calculate member risk profiles under the Health and Human Services-Hierarchical Condition Categories (HHS-HCC) regression model. This regression model is used to calculate risk adjustment transfers. Risk adjustment is a selection mitigation program implemented under the Patient Protection and Affordable Care Act (ACA or Obamacare) in the USA. Under the ACA, health insurance issuers submit claims data to CMS in order for CMS to calculate a risk score under the HHS-HCC regression model. However, CMS does not inform issuers of their average risk score until after the data submission deadline. These data sets can be used by issuers to calculate their average risk score mid-year. More information about risk adjustment and the HHS-HCC model can be found here: <https://www.cms.gov/mmrr/Articles/A2014/MMRR2014_004_03_a03.html>.
Author: Ethan Brockmann [aut, cre, cph]
Maintainer: Ethan Brockmann <ethanbrockmann@gmail.com>

Diff between edgedata versions 0.1.0 dated 2020-04-24 and 0.2.0 dated 2021-02-26

 DESCRIPTION                  |   15 +---
 MD5                          |   97 ++++++++++++++++---------------
 NAMESPACE                    |    4 -
 NEWS.md                      |    7 +-
 R/adult_coefs.R              |   28 ++-------
 R/cc_int.R                   |only
 R/child_coefs.R              |   12 ---
 R/hcc.R                      |   12 ---
 R/infant_coefs.R             |    8 --
 R/rxc.R                      |   12 ---
 README.md                    |   18 +++++
 data/adult_demo.rda          |binary
 data/adult_enroll_dur.rda    |binary
 data/adult_group.rda         |binary
 data/adult_hcc.rda           |binary
 data/adult_interaction.rda   |binary
 data/adult_rxc.rda           |binary
 data/adult_rxc_hcc_inter.rda |binary
 data/cc_hier.rda             |binary
 data/cc_int_h.rda            |only
 data/cc_int_m.rda            |only
 data/cc_severe.rda           |only
 data/child_demo.rda          |binary
 data/child_group.rda         |binary
 data/child_hcc.rda           |binary
 data/cpt_hcpcs.rda           |binary
 data/hcpcs_rxc.rda           |binary
 data/icd_cc.rda              |binary
 data/infant_demo.rda         |binary
 data/infant_mat_sev.rda      |binary
 data/ndc_rxc.rda             |binary
 data/rxc_hier.rda            |binary
 man/adult_demo.Rd            |   88 ++++++++++++++--------------
 man/adult_enroll_dur.Rd      |   90 ++++++++++++++---------------
 man/adult_group.Rd           |  112 ++++++++++++++++++------------------
 man/adult_hcc.Rd             |  112 ++++++++++++++++++------------------
 man/adult_interaction.Rd     |  112 ++++++++++++++++++------------------
 man/adult_rxc.Rd             |  106 +++++++++++++++++-----------------
 man/adult_rxc_hcc_inter.Rd   |  132 +++++++++++++++++++++----------------------
 man/cc_hier.Rd               |   84 +++++++++++++--------------
 man/cc_int_h.Rd              |only
 man/cc_int_m.Rd              |only
 man/cc_severe.Rd             |only
 man/child_demo.Rd            |   88 ++++++++++++++--------------
 man/child_group.Rd           |  112 ++++++++++++++++++------------------
 man/child_hcc.Rd             |  112 ++++++++++++++++++------------------
 man/cpt_hcpcs.Rd             |   94 +++++++++++++++---------------
 man/hcpcs_rxc.Rd             |   88 ++++++++++++++--------------
 man/icd_cc.Rd                |  120 +++++++++++++++++++--------------------
 man/infant_demo.Rd           |   88 ++++++++++++++--------------
 man/infant_mat_sev.Rd        |   98 +++++++++++++++----------------
 man/ndc_rxc.Rd               |   88 ++++++++++++++--------------
 man/rxc_hier.Rd              |   76 ++++++++++++------------
 53 files changed, 1000 insertions(+), 1013 deletions(-)

More information about edgedata at CRAN
Permanent link

New package diveMove with initial version 1.5.3
Package: diveMove
Type: Package
Title: Dive Analysis and Calibration
Version: 1.5.3
Depends: R (>= 3.5.0), methods, stats4
Suggests: knitr, lattice, pander, rmarkdown, tinytest
Imports: geosphere, KernSmooth, plotly, quantreg, uniReg
Author: Sebastian P. Luque <spluque@gmail.com>
Maintainer: Sebastian P. Luque <spluque@gmail.com>
Description: Utilities to represent, visualize, filter, analyse, and summarize time-depth recorder (TDR) data. Miscellaneous functions for handling location data are also provided.
LazyLoad: yes
LazyData: no
ZipData: no
BuildResaveData: no
VignetteBuilder: knitr
Collate: AllClass.R AllGenerics.R AllMethod.R austFilter.R bouts.R calibrate.R detDive.R detPhase.R distSpeed.R diveStats.R oneDiveStats.R plotTDR.R plotZOC.R readLocs.R readTDR.R runquantile.R speedStats.R stampDive.R zoc.R zzz.R
NeedsCompilation: yes
License: GPL-3
URL: https://github.com/spluque/diveMove
BugReports: https://github.com/spluque/diveMove/issues
Packaged: 2021-02-22 20:35:40 UTC; sluque
Repository: CRAN
Date/Publication: 2021-02-26 21:40:20 UTC

More information about diveMove at CRAN
Permanent link

Package bssm updated to version 1.1.3-2 with previous version 1.1.3-1 dated 2021-02-22

Title: Bayesian Inference of Non-Linear and Non-Gaussian State Space Models
Description: Efficient methods for Bayesian inference of state space models via particle Markov chain Monte Carlo (MCMC) and MCMC based on parallel importance sampling type weighted estimators (Vihola, Helske, and Franks, 2020, <doi:10.1111/sjos.12492>). Gaussian, Poisson, binomial, negative binomial, and Gamma observation densities and basic stochastic volatility models with linear-Gaussian state dynamics, as well as general non-linear Gaussian models and discretised diffusion models are supported.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>), Matti Vihola [aut] (<https://orcid.org/0000-0002-8041-7222>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>

Diff between bssm versions 1.1.3-1 dated 2021-02-22 and 1.1.3-2 dated 2021-02-26

 DESCRIPTION                |   10 
 MD5                        |  142 ++---
 NEWS                       |    6 
 R/RcppExports.R            |   76 +-
 R/approx.R                 |    2 
 R/bootstrap_filter.R       |    3 
 R/ekpf_filter.R            |    2 
 R/kfilter.R                |    5 
 R/loglik.R                 |    3 
 R/models.R                 |   12 
 R/particle_smoother.R      |    6 
 R/post_correction.R        |    6 
 R/run_mcmc.R               |   15 
 R/smoother.R               |    6 
 build/vignette.rds         |binary
 inst/doc/bssm.R            |    7 
 inst/doc/bssm.Rmd          |   12 
 inst/doc/bssm.html         |    2 
 inst/doc/growth_model.R    |    8 
 inst/doc/growth_model.Rmd  |   14 
 inst/doc/growth_model.html |    6 
 inst/doc/psi_pf.R          |    9 
 inst/doc/psi_pf.Rmd        |   11 
 inst/doc/sde_model.R       |    7 
 inst/doc/sde_model.Rmd     |   15 
 inst/doc/sde_model.html    |    2 
 src/R_approx.cpp           |    5 
 src/R_bootstrap_filter.cpp |   10 
 src/R_ekf.cpp              |   18 
 src/R_ekpf.cpp             |   10 
 src/R_loglik.cpp           |    5 
 src/R_mcmc.cpp             |  183 ++-----
 src/R_postcorrection.cpp   |   36 -
 src/R_predict.cpp          |   15 
 src/R_predict_past.cpp     |   15 
 src/R_psi.cpp              |    5 
 src/R_sde.cpp              |    2 
 src/R_ukf.cpp              |    5 
 src/RcppExports.cpp        |  190 ++-----
 src/approx_mcmc.cpp        | 1148 ++++++++++++++++++++-------------------------
 src/approx_mcmc.h          |   40 -
 src/conditional_dist.cpp   |    4 
 src/mcmc.cpp               |  174 +++---
 src/mcmc.h                 |   26 -
 src/model_ar1_lg.cpp       |   26 -
 src/model_ar1_lg.h         |    5 
 src/model_ar1_ng.cpp       |   26 -
 src/model_ar1_ng.h         |    6 
 src/model_bsm_lg.cpp       |   30 +
 src/model_bsm_lg.h         |    5 
 src/model_bsm_ng.cpp       |   40 +
 src/model_bsm_ng.h         |    6 
 src/model_ssm_mlg.cpp      |   23 
 src/model_ssm_mlg.h        |   19 
 src/model_ssm_mng.cpp      |   16 
 src/model_ssm_mng.h        |   15 
 src/model_ssm_nlg.cpp      |   22 
 src/model_ssm_nlg.h        |    6 
 src/model_ssm_ulg.cpp      |   20 
 src/model_ssm_ulg.h        |   21 
 src/model_ssm_ung.cpp      |   17 
 src/model_ssm_ung.h        |   19 
 src/model_svm.cpp          |   20 
 src/model_svm.h            |    6 
 src/parset_lg.cpp          |   16 
 src/parset_lg.h            |    4 
 src/parset_ng.cpp          |   16 
 src/parset_ng.h            |    4 
 vignettes/bssm.Rmd         |   12 
 vignettes/growth_model.Rmd |   14 
 vignettes/psi_pf.Rmd       |   11 
 vignettes/sde_model.Rmd    |   15 
 72 files changed, 1375 insertions(+), 1343 deletions(-)

More information about bssm at CRAN
Permanent link

Package adespatial updated to version 0.3-13 with previous version 0.3-10 dated 2021-02-09

Title: Multivariate Multiscale Spatial Analysis
Description: Tools for the multiscale spatial analysis of multivariate data. Several methods are based on the use of a spatial weighting matrix and its eigenvector decomposition (Moran's Eigenvectors Maps, MEM). Several approaches are described in the review Dray et al (2012) <doi:10.1890/11-1183.1>.
Author: Stéphane Dray, David Bauman, Guillaume Blanchet, Daniel Borcard, Sylvie Clappe, Guillaume Guenard, Thibaut Jombart, Guillaume Larocque, Pierre Legendre, Naima Madi, Helene H Wagner
Maintainer: Stéphane Dray <stephane.dray@univ-lyon1.fr>

Diff between adespatial versions 0.3-10 dated 2021-02-09 and 0.3-13 dated 2021-02-26

 DESCRIPTION            |    8 ++++----
 MD5                    |   12 ++++++------
 build/vignette.rds     |binary
 inst/doc/tutorial.html |    4 ++--
 src/constr.hclust.c    |    6 +++---
 src/constr.hclust.h    |    6 +++---
 src/init.c             |    2 +-
 7 files changed, 19 insertions(+), 19 deletions(-)

More information about adespatial at CRAN
Permanent link

Package SpATS updated to version 1.0-12 with previous version 1.0-11 dated 2020-02-02

Title: Spatial Analysis of Field Trials with Splines
Description: Analysis of field trial experiments by modelling spatial trends using two-dimensional Penalised spline (P-spline) models.
Author: Maria Xose Rodriguez-Alvarez [aut, cre], Martin Boer [aut], Paul Eilers [aut], Fred van Eeuwijk [ctb]
Maintainer: Maria Xose Rodriguez-Alvarez <mxrodriguez@bcamath.org>

Diff between SpATS versions 1.0-11 dated 2020-02-02 and 1.0-12 dated 2021-02-26

 DESCRIPTION                    |    8 ++++----
 MD5                            |   18 +++++++++---------
 NEWS                           |    8 ++++++--
 R/SpATS.R                      |    2 +-
 R/construct.henderson.matrix.R |    8 ++++----
 R/controlSpATS.R               |    5 +++--
 R/predict.SpATS.R              |    6 +++++-
 man/SpATS-package.Rd           |    4 ++--
 man/SpATS.Rd                   |    2 +-
 man/controlSpATS.Rd            |    6 ++++--
 10 files changed, 39 insertions(+), 28 deletions(-)

More information about SpATS at CRAN
Permanent link

Package packDAMipd updated to version 0.2.1 with previous version 0.2.0 dated 2021-02-19

Title: Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data
Description: A collection of functions to construct Markov model for model-based cost-effectiveness analysis. This includes creating Markov model (both time homogenous and time dependent models), decision analysis, sensitivity analysis (deterministic and probabilistic). The package allows estimation of parameters for the Markov model from a given individual patient level data, provided the data file follows some standard data entry rules.
Author: Sheeja Manchira Krishnan [aut, cre]
Maintainer: Sheeja Manchira Krishnan <sheejamk@gmail.com>

Diff between packDAMipd versions 0.2.0 dated 2021-02-19 and 0.2.1 dated 2021-02-26

 DESCRIPTION                                                 |   17 +--
 MD5                                                         |   38 ++++----
 R/3a_trialdata_analysis_input_functions.R                   |   28 ++++--
 R/3b_outcome_analysis_functions.R                           |   34 +++----
 R/3c_costing_medication_functions.R                         |    2 
 R/3d_decision_analysis_functions.R                          |    2 
 R/help_cost_analysis_functions.R                            |   16 +--
 R/help_parameter_estimation_functions.R                     |    4 
 R/help_parameter_estimation_survival.R                      |    4 
 README.md                                                   |    2 
 inst/doc/Deterministic_sensitivity_analysis.html            |    4 
 inst/doc/Probabilstic_sensitivity_analysis.html             |   40 ++++----
 inst/doc/Sick_sicker_age_dependent.html                     |    4 
 inst/doc/Simple_sick_sicker.html                            |    4 
 inst/doc/cycle_dependent.html                               |    4 
 man/get_eq5d_details.Rd                                     |    2 
 tests/testthat/test-3a_trialdata_analysis_input_functions.R |    8 +
 tests/testthat/test-3b_outcome_analysis_functions.R         |   14 +--
 tests/testthat/test-3c_costing_medication_functions.R       |   55 ++++++------
 tests/testthat/test-help_parameter_estimation_functions.R   |   20 ++--
 20 files changed, 161 insertions(+), 141 deletions(-)

More information about packDAMipd at CRAN
Permanent link

Package UniprotR updated to version 2.0.4 with previous version 2.0.3 dated 2021-01-23

Title: Retrieving Information of Proteins from Uniprot
Description: Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.
Author: Mohamed Soudy [aut, cre], Ali Mostafa [aut]
Maintainer: Mohamed Soudy <MohmedSoudy2009@gmail.com>

Diff between UniprotR versions 2.0.3 dated 2021-01-23 and 2.0.4 dated 2021-02-26

 DESCRIPTION         |    6 ++---
 MD5                 |    4 +--
 R/PathwayAnalysis.R |   54 ++++++++++++++++++++++++++++------------------------
 3 files changed, 35 insertions(+), 29 deletions(-)

More information about UniprotR at CRAN
Permanent link

Package dataquieR updated to version 1.0.5 with previous version 1.0.4 dated 2021-02-02

Title: Data Quality in Epidemiological Research
Description: A set of functions to assess data quality issues in studies. See 'TMF' <https://www.tmf-ev.de/EnglishSite/Home.aspx> guideline and 'DFG' <https://www.dfg.de/en/index.jsp> project at <https://dfg-qa.ship-med.uni-greifswald.de>.
Author: University Medicine Greifswald [cph], Adrian Richter [aut], Carsten Oliver Schmidt [aut], Stephan Struckmann [aut, cre]
Maintainer: Stephan Struckmann <stephan.struckmann@uni-greifswald.de>

Diff between dataquieR versions 1.0.4 dated 2021-02-02 and 1.0.5 dated 2021-02-26

 DESCRIPTION                                        |   27 +++++----
 LICENSE                                            |only
 MD5                                                |   21 +++----
 NEWS.md                                            |    7 ++
 R/com_item_missingness.R                           |   10 +--
 R/con_contradictions.R                             |    3 -
 R/con_inadmissible_categorical.R                   |    3 -
 README.md                                          |   59 +++++++++++++++++++--
 inst/doc/DQ-report-example.html                    |   53 +++++++++---------
 man/com_item_missingness.Rd                        |   10 +--
 man/con_contradictions.Rd                          |    3 -
 tests/testthat/test-con_inadmissible_categorical.R |   15 +++++
 12 files changed, 147 insertions(+), 64 deletions(-)

More information about dataquieR at CRAN
Permanent link

Package set updated to version 1.2 with previous version 1.1 dated 2020-02-22

Title: Set Operation
Description: More easy to get intersection, union or complementary set and combinations.
Author: Zhi Jin, Jing Zhang
Maintainer: Zhi Jin <nalanchongxuan@163.com>

Diff between set versions 1.1 dated 2020-02-22 and 1.2 dated 2021-02-26

 set-1.1/set/R/a_and.R            |only
 set-1.1/set/R/a_not.R            |only
 set-1.1/set/R/a_or.R             |only
 set-1.1/set/R/grepes_and.R       |only
 set-1.1/set/R/grepes_not.R       |only
 set-1.1/set/R/grepes_or.R        |only
 set-1.1/set/R/is.sub.R           |only
 set-1.1/set/R/toVector.R         |only
 set-1.1/set/man/and2.Rd          |only
 set-1.1/set/man/is.sub.Rd        |only
 set-1.1/set/man/not2.Rd          |only
 set-1.1/set/man/or2.Rd           |only
 set-1.1/set/man/toVector.Rd      |only
 set-1.2/set/DESCRIPTION          |   11 ++++++-----
 set-1.2/set/MD5                  |   30 ++++++++++++------------------
 set-1.2/set/NAMESPACE            |   37 +++++++++++++++++--------------------
 set-1.2/set/R/and.R              |only
 set-1.2/set/R/grep.R             |only
 set-1.2/set/R/grepl_not_and_or.R |only
 set-1.2/set/R/not.R              |only
 set-1.2/set/R/or.R               |only
 set-1.2/set/man/and.Rd           |   16 ++++++++++++++--
 set-1.2/set/man/grep.Rd          |only
 set-1.2/set/man/grepl.Rd         |only
 set-1.2/set/man/not.Rd           |   19 ++++++++++++++++---
 set-1.2/set/man/or.Rd            |   16 ++++++++++++++--
 26 files changed, 79 insertions(+), 50 deletions(-)

More information about set at CRAN
Permanent link

Package fwildclusterboot updated to version 0.3.2 with previous version 0.3.1 dated 2021-02-16

Title: Fast Wild Cluster Bootstrap Inference for Linear Regression Models
Description: Implementation of the fast algorithm for wild cluster bootstrap inference developed in Roodman et al (2019, STATA Journal) for linear regression models <https://journals.sagepub.com/doi/full/10.1177/1536867X19830877>, which makes it feasible to quickly calculate bootstrap test statistics based on a large number of bootstrap draws even for large samples - as long as the number of bootstrapping clusters is not too large. Multiway clustering, regression weights, bootstrap weights, fixed effects and subcluster bootstrapping are supported. Further, both restricted (WCR) and unrestricted (WCU) bootstrap are supported. Methods are provided for a variety of fitted models, including 'lm()', 'feols()' (from package 'fixest') and 'felm()' (from package 'lfe').
Author: Alexander Fischer [aut, cre], David Roodman [aut], Achim Zeileis [ctb] (Author of included sandwich fragments), Nathaniel Graham [ctb] (Contributor to included sandwich fragments), Susanne Koell [ctb] (Contributor to included sandwich fragments), Laurent Berge [ctb] (Author of included fixest fragments), Sebastian Krantz [ctb]
Maintainer: Alexander Fischer <alexander-fischer1801@t-online.de>

Diff between fwildclusterboot versions 0.3.1 dated 2021-02-16 and 0.3.2 dated 2021-02-26

 DESCRIPTION                    |    8 ++++----
 MD5                            |   12 ++++++------
 NEWS.md                        |    8 +++++++-
 README.md                      |   10 +++++++---
 build/vignette.rds             |binary
 inst/doc/fwildclusterboot.html |   30 +++++++++++++++---------------
 inst/tinytest/test_nthreads.R  |   31 +++++++++++++++++++++++++++----
 7 files changed, 66 insertions(+), 33 deletions(-)

More information about fwildclusterboot at CRAN
Permanent link

Package blocksdesign updated to version 4.8 with previous version 4.7 dated 2021-01-12

Title: Nested and Crossed Block Designs for Factorial and Unstructured Treatment Sets
Description: Constructs treatment and block designs for linear treatment models with crossed or nested block factors. The treatment design can be any feasible linear model and the block design can be any feasible combination of crossed or nested block factors. The block design is a sum of one or more block factors and the block design is optimized sequentially with the levels of each successive block factor optimized conditional on all previously optimized block factors. D-optimality is used throughout except for square or rectangular lattice block designs which are constructed algebraically using mutually orthogonal Latin squares. Crossed block designs with interaction effects are optimized using a weighting scheme which allows for differential weighting of first and second-order block effects. Outputs include a table showing the allocation of treatments to blocks and tables showing the achieved D-efficiency factors for each block and treatment design. Edmondson, R.N. Multi-level Block Designs for Comparative Experiments. JABES 25, 500–522 (2020) <doi:10.1007/s13253-020-00416-0>.
Author: R. N. Edmondson.
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>

Diff between blocksdesign versions 4.7 dated 2021-01-12 and 4.8 dated 2021-02-26

 DESCRIPTION               |   12 
 MD5                       |   18 
 NAMESPACE                 |    2 
 R/blocks.R                |    3 
 R/blocksdesign-package.R  |  118 ++--
 R/design.R                | 1119 ++++++++++++++++++++++++++--------------------
 R/nestedBlocks.R          |    3 
 build/vignette.rds        |binary
 inst/doc/blocksdesign.pdf |binary
 man/design.Rd             |  148 ++----
 10 files changed, 797 insertions(+), 626 deletions(-)

More information about blocksdesign at CRAN
Permanent link

Package spaMM updated to version 3.7.2 with previous version 3.6.0 dated 2021-01-15

Title: Mixed-Effect Models, Particularly Spatial Models
Description: Inference based on mixed-effect models, including generalized linear mixed models with spatial correlations, multivariate responses, and models with non-Gaussian random effects (e.g., Beta). Various approximations of likelihood or restricted likelihood are implemented, in particular Laplace approximation and h-likelihood (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>). Both classical geostatistical models, and Markov random field models on irregular grids (as considered in the 'INLA' package, <https://www.r-inla.org>), can be fitted. Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model.
Author: François Rousset [aut, cre, cph] (<https://orcid.org/0000-0003-4670-0371>), Jean-Baptiste Ferdy [aut, cph], Alexandre Courtiol [aut] (<https://orcid.org/0000-0003-0637-2959>), GSL authors [ctb] (src/gsl_bessel.*)
Maintainer: François Rousset <francois.rousset@umontpellier.fr>

Diff between spaMM versions 3.6.0 dated 2021-01-15 and 3.7.2 dated 2021-02-26

 spaMM-3.6.0/spaMM/tests/testthat/test-IsoriX.R                    |only
 spaMM-3.7.2/spaMM/DESCRIPTION                                     |   15 
 spaMM-3.7.2/spaMM/MD5                                             |  190 ++-
 spaMM-3.7.2/spaMM/NAMESPACE                                       |    2 
 spaMM-3.7.2/spaMM/R/CanonizeRanPars.R                             |    3 
 spaMM-3.7.2/spaMM/R/HLCor_body.R                                  |    9 
 spaMM-3.7.2/spaMM/R/HLFactorList.R                                |   40 
 spaMM-3.7.2/spaMM/R/HLfit.R                                       |   65 -
 spaMM-3.7.2/spaMM/R/HLfit_Internals.R                             |  459 +++++----
 spaMM-3.7.2/spaMM/R/HLfit_body.R                                  |  255 ++---
 spaMM-3.7.2/spaMM/R/HLfit_body_augZXy.R                           |   48 
 spaMM-3.7.2/spaMM/R/HLframes.R                                    |  181 +--
 spaMM-3.7.2/spaMM/R/IRLS_internals.R                              |   16 
 spaMM-3.7.2/spaMM/R/LR.R                                          |   49 -
 spaMM-3.7.2/spaMM/R/LevM_v_h.R                                    |   12 
 spaMM-3.7.2/spaMM/R/LevM_v_h_spprec.R                             |   10 
 spaMM-3.7.2/spaMM/R/LevenbergMstep.R                              |    2 
 spaMM-3.7.2/spaMM/R/MakeCovEst.R                                  |   35 
 spaMM-3.7.2/spaMM/R/RcppExports.R                                 |   52 -
 spaMM-3.7.2/spaMM/R/augZXy_obj.R                                  |only
 spaMM-3.7.2/spaMM/R/calc_LRT.R                                    |   20 
 spaMM-3.7.2/spaMM/R/confint.R                                     |    7 
 spaMM-3.7.2/spaMM/R/corrHLfit-internals.R                         |   84 -
 spaMM-3.7.2/spaMM/R/corrHLfit.R                                   |    2 
 spaMM-3.7.2/spaMM/R/corrHLfit_body.R                              |    1 
 spaMM-3.7.2/spaMM/R/corrPars.R                                    |    2 
 spaMM-3.7.2/spaMM/R/cov_new_fix.R                                 |  135 ++
 spaMM-3.7.2/spaMM/R/determine_spprec.R                            |    2 
 spaMM-3.7.2/spaMM/R/extractors.R                                  |   54 -
 spaMM-3.7.2/spaMM/R/fit_as_ZX.R                                   |  167 +--
 spaMM-3.7.2/spaMM/R/fit_as_sparsePrecision.R                      |  111 +-
 spaMM-3.7.2/spaMM/R/fitme_body.R                                  |    5 
 spaMM-3.7.2/spaMM/R/fitme_fitmv_internals.R                       |    2 
 spaMM-3.7.2/spaMM/R/fitmecorrHLfit_body_internals.R               |  189 ++-
 spaMM-3.7.2/spaMM/R/fitmv_body.R                                  |    1 
 spaMM-3.7.2/spaMM/R/geo_info.R                                    |  237 ++--
 spaMM-3.7.2/spaMM/R/get_cPredVar.R                                |    2 
 spaMM-3.7.2/spaMM/R/get_inits_by_glm.R                            |    4 
 spaMM-3.7.2/spaMM/R/hatvalues.R                                   |    1 
 spaMM-3.7.2/spaMM/R/locoptim.R                                    |   19 
 spaMM-3.7.2/spaMM/R/multiFRK.R                                    |    4 
 spaMM-3.7.2/spaMM/R/newPLS.R                                      |   84 -
 spaMM-3.7.2/spaMM/R/newframe.R                                    |only
 spaMM-3.7.2/spaMM/R/postfit_internals.R                           |   35 
 spaMM-3.7.2/spaMM/R/predict.R                                     |    4 
 spaMM-3.7.2/spaMM/R/predict_mv.R                                  |    6 
 spaMM-3.7.2/spaMM/R/preprocess.R                                  |  490 +++-------
 spaMM-3.7.2/spaMM/R/preprocess_MV.R                               |  104 +-
 spaMM-3.7.2/spaMM/R/preprocess_internals.R                        |  234 ++++
 spaMM-3.7.2/spaMM/R/profile.R                                     |    2 
 spaMM-3.7.2/spaMM/R/sXaug_EigenDense_QRP_Chol_scaled.R            |  210 ++--
 spaMM-3.7.2/spaMM/R/sXaug_Matrix_QRP_CHM.R                        |  191 ++-
 spaMM-3.7.2/spaMM/R/sXaug_sparsePrecisions.R                      |  207 ++--
 spaMM-3.7.2/spaMM/R/safe_opt.R                                    |   54 -
 spaMM-3.7.2/spaMM/R/separator.R                                   |    1 
 spaMM-3.7.2/spaMM/R/simulate.HL.R                                 |   11 
 spaMM-3.7.2/spaMM/R/spaMM.data.R                                  |   22 
 spaMM-3.7.2/spaMM/R/sparseX.R                                     |    2 
 spaMM-3.7.2/spaMM/R/step_HLfit.R                                  |    6 
 spaMM-3.7.2/spaMM/R/summary.HL.R                                  |    4 
 spaMM-3.7.2/spaMM/R/terms.R                                       |   47 
 spaMM-3.7.2/spaMM/R/update.HL.R                                   |   51 -
 spaMM-3.7.2/spaMM/build/partial.rdb                               |binary
 spaMM-3.7.2/spaMM/inst/NEWS.Rd                                    |   19 
 spaMM-3.7.2/spaMM/man/GLM.fit.Rd                                  |    2 
 spaMM-3.7.2/spaMM/man/Matern.corr.Rd                              |    9 
 spaMM-3.7.2/spaMM/man/arabidopsis.Rd                              |    2 
 spaMM-3.7.2/spaMM/man/convergence.Rd                              |    6 
 spaMM-3.7.2/spaMM/man/eval_replicate.Rd                           |    2 
 spaMM-3.7.2/spaMM/man/extractors.Rd                               |    2 
 spaMM-3.7.2/spaMM/man/libraries.Rd                                |   11 
 spaMM-3.7.2/spaMM/man/summary.HL.Rd                               |    2 
 spaMM-3.7.2/spaMM/src/PLS.cpp                                     |   59 +
 spaMM-3.7.2/spaMM/src/RcppExports.cpp                             |  152 ++-
 spaMM-3.7.2/spaMM/src/internals.cpp                               |only
 spaMM-3.7.2/spaMM/src/internals.h                                 |only
 spaMM-3.7.2/spaMM/src/spaMM_linear.cpp                            |   99 +-
 spaMM-3.7.2/spaMM/tests/test-all.R                                |    9 
 spaMM-3.7.2/spaMM/tests/testthat/nestedFiles/test-mv-nested.R     |only
 spaMM-3.7.2/spaMM/tests/testthat/test-AR1.R                       |   21 
 spaMM-3.7.2/spaMM/tests/testthat/test-CAR.R                       |    6 
 spaMM-3.7.2/spaMM/tests/testthat/test-COMPoisson.R                |    6 
 spaMM-3.7.2/spaMM/tests/testthat/test-Infusion.R                  |    4 
 spaMM-3.7.2/spaMM/tests/testthat/test-IsoriX-new.R                |only
 spaMM-3.7.2/spaMM/tests/testthat/test-LRT-boot.R                  |    7 
 spaMM-3.7.2/spaMM/tests/testthat/test-Nugget.R                    |    5 
 spaMM-3.7.2/spaMM/tests/testthat/test-Rasch.R                     |    4 
 spaMM-3.7.2/spaMM/tests/testthat/test-adjacency-corrMatrix.R      |   10 
 spaMM-3.7.2/spaMM/tests/testthat/test-adjacency-long.R            |    5 
 spaMM-3.7.2/spaMM/tests/testthat/test-cloglog.R                   |    5 
 spaMM-3.7.2/spaMM/tests/testthat/test-more-predict.R              |    7 
 spaMM-3.7.2/spaMM/tests/testthat/test-mv.R                        |only
 spaMM-3.7.2/spaMM/tests/testthat/test-pedigree.R                  |    4 
 spaMM-3.7.2/spaMM/tests/testthat/test-poly.R                      |   12 
 spaMM-3.7.2/spaMM/tests/testthat/test-predVar-Matern-corrMatrix.R |    5 
 spaMM-3.7.2/spaMM/tests/testthat/test-predVar.R                   |   21 
 spaMM-3.7.2/spaMM/tests/testthat/test-ranCoefs.R                  |    5 
 spaMM-3.7.2/spaMM/tests/testthat/test-random-slope.R              |   24 
 spaMM-3.7.2/spaMM/tests/testthat/test-spaMM.R                     |    7 
 spaMM-3.7.2/spaMM/tests/testthat/test-truncated.R                 |    4 
 100 files changed, 2791 insertions(+), 2002 deletions(-)

More information about spaMM at CRAN
Permanent link

Package scModels updated to version 1.0.2 with previous version 1.0.1 dated 2019-09-02

Title: Fitting Discrete Distribution Models to Count Data
Description: Provides functions for fitting discrete distribution models to count data. Included are the Poisson, the negative binomial, the Poisson-inverse gaussian and, most importantly, a new implementation of the Poisson-beta distribution (density, distribution and quantile functions, and random number generator) together with a needed new implementation of Kummer's function (also: confluent hypergeometric function of the first kind). Three different implementations of the Gillespie algorithm allow data simulation based on the basic, switching or bursting mRNA generating processes. Moreover, likelihood functions for four variants of each of the three aforementioned distributions are also available. The variants include one population and two population mixtures, both with and without zero-inflation. The package depends on the 'MPFR' libraries (<https://www.mpfr.org/>) which need to be installed separately (see description at <https://github.com/fuchslab/scModels>). This package is supplement to the paper "A mechanistic model for the negative binomial distribution of single-cell mRNA counts" by Lisa Amrhein, Kumar Harsha and Christiane Fuchs (2019) <doi:10.1101/657619> available on bioRxiv.
Author: Lisa Amrhein [aut, cre], Kumar Harsha [aut], Christiane Fuchs [aut], Pavel Holoborodko [ctb] (Author and copyright holder of 'mpreal.h')
Maintainer: Lisa Amrhein <amrheinlisa@gmail.com>

Diff between scModels versions 1.0.1 dated 2019-09-02 and 1.0.2 dated 2021-02-26

 DESCRIPTION                                    |   12 
 MD5                                            |   49 
 NAMESPACE                                      |   84 +
 NEWS.md                                        |   37 
 R/RcppExports.R                                |  105 +-
 R/gillespie.R                                  |  187 ++-
 R/log_likelihood.R                             | 1286 +++++++++++++++----------
 R/par_est_fns.R                                |  655 +++++++-----
 R/pb.R                                         |  147 +-
 man/Inverse-Gaussian.Rd                        |only
 man/Poisson-beta.Rd                            |  114 +-
 man/chf_1F1.Rd                                 |   47 
 man/fit_params.Rd                              |   64 -
 man/gmRNA.Rd                                   |  109 +-
 man/nlogL.Rd                                   |  303 +++--
 src/RcppExports.cpp                            |   28 
 src/gillespie.cpp                              |  166 +++
 src/pb.cpp                                     |    7 
 src/scModels_init.c                            |    5 
 tests/testthat.R                               |    8 
 tests/testthat/test-NAs.R                      |   56 -
 tests/testthat/test-chf_1F1.R                  |   10 
 tests/testthat/test-discrete-sum.R             |   14 
 tests/testthat/test-discrete.R                 |   28 
 tests/testthat/test-inappropriate-parameters.R |   54 -
 tests/testthat/test-likelihood.R               |   64 -
 26 files changed, 2236 insertions(+), 1403 deletions(-)

More information about scModels at CRAN
Permanent link

Package lubridate updated to version 1.7.10 with previous version 1.7.9.2 dated 2020-11-13

Title: Make Dealing with Dates a Little Easier
Description: Functions to work with date-times and time-spans: fast and user friendly parsing of date-time data, extraction and updating of components of a date-time (years, months, days, hours, minutes, and seconds), algebraic manipulation on date-time and time-span objects. The 'lubridate' package has a consistent and memorable syntax that makes working with dates easy and fun. Parts of the 'CCTZ' source code, released under the Apache 2.0 License, are included in this package. See <https://github.com/google/cctz> for more details.
Author: Vitalie Spinu [aut, cre], Garrett Grolemund [aut], Hadley Wickham [aut], Ian Lyttle [ctb], Imanuel Costigan [ctb], Jason Law [ctb], Doug Mitarotonda [ctb], Joseph Larmarange [ctb], Jonathan Boiser [ctb], Chel Hee Lee [ctb], Google Inc. [ctb, cph]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>

Diff between lubridate versions 1.7.9.2 dated 2020-11-13 and 1.7.10 dated 2021-02-26

 DESCRIPTION                        |    6 -
 MD5                                |   28 ++---
 NEWS.md                            |   12 ++
 R/coercion.r                       |   20 ++--
 R/ops-division.r                   |    8 -
 R/parse.r                          |  175 +++++++++++++++++++------------------
 R/zzz.R                            |    6 -
 inst/doc/lubridate.html            |   19 +++-
 man/as_date.Rd                     |   18 ++-
 man/parse_date_time.Rd             |  121 ++++++++++++-------------
 src/cctz/src/time_zone_libc.cc     |    8 +
 src/tparse.c                       |    2 
 src/utils.c                        |    4 
 tests/testthat/test-ops-division.R |   10 +-
 tests/testthat/test-parsers.R      |   28 +++++
 15 files changed, 281 insertions(+), 184 deletions(-)

More information about lubridate at CRAN
Permanent link

Package GenomeAdmixR updated to version 2.0.2 with previous version 1.1.3 dated 2021-01-24

Title: Simulate Admixture of Genomes
Description: Individual-based simulations forward in time, simulating how patterns in ancestry along the genome change after admixture. Full description can be found in Janzen (2020) <doi:10.1101/2020.10.19.343491>.
Author: Thijs Janzen [aut, cre], Fernando Diaz G. [ctb], Richèl J.C. Bilderbeek [ctb]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>

Diff between GenomeAdmixR versions 1.1.3 dated 2021-01-24 and 2.0.2 dated 2021-02-26

 GenomeAdmixR-1.1.3/GenomeAdmixR/R/iso_female.R                                          |only
 GenomeAdmixR-1.1.3/GenomeAdmixR/R/simulate_admixture_migration.R                        |only
 GenomeAdmixR-1.1.3/GenomeAdmixR/R/simulate_admixture_until.R                            |only
 GenomeAdmixR-1.1.3/GenomeAdmixR/man/simulate_admixture_migration.Rd                     |only
 GenomeAdmixR-1.1.3/GenomeAdmixR/src/random_functions.cpp                                |only
 GenomeAdmixR-1.1.3/GenomeAdmixR/tests/testthat/test.pop                                 |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/DESCRIPTION                                             |   21 
 GenomeAdmixR-2.0.2/GenomeAdmixR/MD5                                                     |  194 +
 GenomeAdmixR-2.0.2/GenomeAdmixR/NAMESPACE                                               |   17 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/RcppExports.R                                         |   28 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/ancestry_module.R                                     |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/calculate_allele_frequencies.R                        |   20 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/calculate_fst.R                                       |   29 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/calculate_heterozygosity.R                            |    2 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/calculate_ld.R                                        |   83 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/calculate_marker_frequency.R                          |   18 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/create_input_data.R                                   |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/create_iso_female.R                                   |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/create_iso_female_data.R                              |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/data.R                                                |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/joyplot_frequencies.R                                 |   25 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/junctions.R                                           |    4 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/migration_settings.R                                  |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/plot_chromosome.R                                     |   25 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/plot_difference_frequencies.R                         |   30 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/plot_frequencies.R                                    |   18 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/plot_over_time.R                                      |   12 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/plot_start_end.R                                      |   40 
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/sequence_module.R                                     |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/simulate_admixture.R                                  |  283 +-
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/simulate_ancestry.R                                   |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/simulate_ancestry_migration.R                         |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/simulate_ancestry_until.R                             |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/simulate_sequence.R                                   |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/simulate_sequence_migration.R                         |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/simulate_sequence_until.R                             |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/R/utilities.R                                           |  281 ++
 GenomeAdmixR-2.0.2/GenomeAdmixR/README.md                                               |    7 
 GenomeAdmixR-2.0.2/GenomeAdmixR/build/vignette.rds                                      |binary
 GenomeAdmixR-2.0.2/GenomeAdmixR/data                                                    |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Demonstrate_isofemales.R                       |   45 
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Demonstrate_isofemales.Rmd                     |   45 
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Demonstrate_isofemales.html                    |  669 +++---
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Empirical_data.R                               |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Empirical_data.Rmd                             |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Empirical_data.html                            |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Joyplots.R                                     |   13 
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Joyplots.Rmd                                   |   16 
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Joyplots.html                                  |  559 +++--
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Visualization.R                                |   13 
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Visualization.Rmd                              |   47 
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Visualization.html                             |  604 ++++--
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Walkthrough.R                                  |  129 -
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Walkthrough.Rmd                                |  131 -
 GenomeAdmixR-2.0.2/GenomeAdmixR/inst/doc/Walkthrough.html                               |  976 +++++-----
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/GenomeAdmixR-package.Rd                             |    5 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/ancestry_module.Rd                                  |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/calculate_allele_frequencies.Rd                     |   11 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/calculate_fst.Rd                                    |    9 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/calculate_heterozygosity.Rd                         |    2 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/calculate_ld.Rd                                     |   24 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/calculate_marker_frequency.Rd                       |    9 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/combine_input_data.Rd                               |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/create_artificial_genomeadmixr_data.Rd              |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/create_iso_female.Rd                                |   38 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/dgrp2.3R.5k.data.Rd                                 |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/iso_female_ancestry.Rd                              |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/iso_female_sequence.Rd                              |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/migration_settings.Rd                               |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/plink_to_genomeadmixr_data.Rd                       |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/plot_chromosome.Rd                                  |   19 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/plot_difference_frequencies.Rd                      |   17 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/plot_frequencies.Rd                                 |    8 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/plot_joyplot_frequencies.Rd                         |   13 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/plot_over_time.Rd                                   |   10 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/plot_start_end.Rd                                   |   11 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/print.genomeadmixr_data.Rd                          |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/read_input_data.Rd                                  |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/sequence_module.Rd                                  |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/simulate_admixture.Rd                               |   76 
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/simulate_ancestry.Rd                                |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/simulate_ancestry_migration.Rd                      |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/simulate_sequence.Rd                                |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/simulate_sequence_migration.Rd                      |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/simulation_data_to_genomeadmixr_data.Rd             |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/vcfR_to_genomeadmixr_data.Rd                        |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/man/write_as_plink.Rd                                   |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/Fish.cpp                                            |  120 -
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/Fish.h                                              |    4 
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/Fish_emp.h                                          |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/Makevars                                            |    1 
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/Makevars.win                                        |    2 
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/RcppExports.cpp                                     |  113 +
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/helper_functions.cpp                                |  750 ++++++-
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/helper_functions.h                                  |   68 
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/random_functions.h                                  |  107 +
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/simulate.cpp                                        |  181 +
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/simulate_emp.cpp                                    |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/simulate_migration.cpp                              |  275 ++
 GenomeAdmixR-2.0.2/GenomeAdmixR/src/simulate_migration_emp.cpp                          |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/Rplots.pdf                               |binary
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-LD.R                                |   85 
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-allele_frequencies.R                |   63 
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-combined_input_data.R               |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-fst.R                               |   43 
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-general_usage.R                     |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-isoFemales.R                        |   95 
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-joyplot.R                           |   14 
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-junctions.R                         |   23 
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-plink.R                             |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-save_load.R                         |   18 
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-selection.R                         |  135 -
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-simulate_admixture.R                |  163 -
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-simulate_admixture_data.R           |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-simulate_admixture_migration_data.R |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-simulate_admixture_until.R          |   86 
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-simulate_migration.R                |  151 -
 GenomeAdmixR-2.0.2/GenomeAdmixR/tests/testthat/test-utilities.R                         |   62 
 GenomeAdmixR-2.0.2/GenomeAdmixR/vignettes/Demonstrate_isofemales.Rmd                    |   45 
 GenomeAdmixR-2.0.2/GenomeAdmixR/vignettes/Empirical_data.Rmd                            |only
 GenomeAdmixR-2.0.2/GenomeAdmixR/vignettes/Joyplots.Rmd                                  |   16 
 GenomeAdmixR-2.0.2/GenomeAdmixR/vignettes/Visualization.Rmd                             |   47 
 GenomeAdmixR-2.0.2/GenomeAdmixR/vignettes/Walkthrough.Rmd                               |  131 -
 123 files changed, 4679 insertions(+), 2755 deletions(-)

More information about GenomeAdmixR at CRAN
Permanent link

Package CME.assistant updated to version 1.1.3 with previous version 1.1.1 dated 2020-12-15

Title: Reusable Assisting Functions for Child Mortality Estimation
Description: Provide helper functions for UNICEF child mortality estimation.
Author: Yang Liu [aut, cre] (<https://orcid.org/0000-0001-6557-6439>)
Maintainer: Yang Liu <lyhello@gmail.com>

Diff between CME.assistant versions 1.1.1 dated 2020-12-15 and 1.1.3 dated 2021-02-26

 CME.assistant-1.1.1/CME.assistant/data/default_label_1.rda    |only
 CME.assistant-1.1.1/CME.assistant/man/default_label_1.Rd      |only
 CME.assistant-1.1.1/CME.assistant/man/fc.Rd                   |only
 CME.assistant-1.1.3/CME.assistant/DESCRIPTION                 |    9 
 CME.assistant-1.1.3/CME.assistant/MD5                         |   77 +-
 CME.assistant-1.1.3/CME.assistant/NAMESPACE                   |    6 
 CME.assistant-1.1.3/CME.assistant/R/0.directories.R           |only
 CME.assistant-1.1.3/CME.assistant/R/1.data_engineering.R      |  121 +++
 CME.assistant-1.1.3/CME.assistant/R/2.plots.R                 |    9 
 CME.assistant-1.1.3/CME.assistant/R/3.data_subset_dataset.R   |  379 ----------
 CME.assistant-1.1.3/CME.assistant/R/misc.R                    |    2 
 CME.assistant-1.1.3/CME.assistant/R/mydata.R                  |    8 
 CME.assistant-1.1.3/CME.assistant/README.md                   |   15 
 CME.assistant-1.1.3/CME.assistant/data/default_label.rda      |only
 CME.assistant-1.1.3/CME.assistant/data/shortind_indicator.rda |only
 CME.assistant-1.1.3/CME.assistant/inst/doc/CMEvignette1.R     |   10 
 CME.assistant-1.1.3/CME.assistant/inst/doc/CMEvignette1.Rmd   |   13 
 CME.assistant-1.1.3/CME.assistant/inst/doc/CMEvignette1.html  |   47 -
 CME.assistant-1.1.3/CME.assistant/man/add.new.series.imr.Rd   |    2 
 CME.assistant-1.1.3/CME.assistant/man/add.new.series.nmr.Rd   |    5 
 CME.assistant-1.1.3/CME.assistant/man/add.new.series.u5mr.Rd  |    2 
 CME.assistant-1.1.3/CME.assistant/man/default_label.Rd        |only
 CME.assistant-1.1.3/CME.assistant/man/find_latest_date.Rd     |   32 
 CME.assistant-1.1.3/CME.assistant/man/get.IGME.dir.Rd         |   36 
 CME.assistant-1.1.3/CME.assistant/man/get.IGMEfig.dir.Rd      |   38 -
 CME.assistant-1.1.3/CME.assistant/man/get.IGMEinput.dir.Rd    |   36 
 CME.assistant-1.1.3/CME.assistant/man/get.IGMEoutput.dir.Rd   |   38 -
 CME.assistant-1.1.3/CME.assistant/man/get.country.info.Rd     |    2 
 CME.assistant-1.1.3/CME.assistant/man/get.dir_IMR.Rd          |   36 
 CME.assistant-1.1.3/CME.assistant/man/get.dir_NMR.Rd          |   36 
 CME.assistant-1.1.3/CME.assistant/man/get.dir_U5MR.Rd         |   38 -
 CME.assistant-1.1.3/CME.assistant/man/get.dir_gender.Rd       |   40 -
 CME.assistant-1.1.3/CME.assistant/man/get.file.name.Rd        |   48 -
 CME.assistant-1.1.3/CME.assistant/man/get.max.date.Rd         |   38 -
 CME.assistant-1.1.3/CME.assistant/man/get.opt.dir.Rd          |   52 -
 CME.assistant-1.1.3/CME.assistant/man/get.raw.dir.Rd          |   52 -
 CME.assistant-1.1.3/CME.assistant/man/get.ref.date.Rd         |   46 -
 CME.assistant-1.1.3/CME.assistant/man/leap_year.Rd            |only
 CME.assistant-1.1.3/CME.assistant/man/load.IGMEinput.dir.Rd   |   30 
 CME.assistant-1.1.3/CME.assistant/man/load.IGMEoutput.dir.Rd  |   30 
 CME.assistant-1.1.3/CME.assistant/man/read.country.summary.Rd |only
 CME.assistant-1.1.3/CME.assistant/man/read.region.summary.Rd  |only
 CME.assistant-1.1.3/CME.assistant/man/revise.path.Rd          |   32 
 CME.assistant-1.1.3/CME.assistant/man/shortind_indicator.Rd   |only
 CME.assistant-1.1.3/CME.assistant/vignettes/CMEvignette1.Rmd  |   13 
 45 files changed, 608 insertions(+), 770 deletions(-)

More information about CME.assistant at CRAN
Permanent link

Package subniche updated to version 1.4 with previous version 1.3 dated 2020-06-23

Title: Within Outlying Mean Indexes: Refining the OMI Analysis
Description: Complementary indexes calculation to the Outlying Mean Index analysis to explore niche shift of a community and biological constraint within an Euclidean space, with graphical displays. For details see Karasiewicz et al. (2017) <doi:10.7717/Peerj.3364>.
Author: Stephane Karasiewicz [aut, cre] (<https://orcid.org/0000-0003-1652-9921>)
Maintainer: Stephane Karasiewicz <skaraz.science@gmail.com>

Diff between subniche versions 1.3 dated 2020-06-23 and 1.4 dated 2021-02-26

 subniche-1.3/subniche/R/margvect.R         |only
 subniche-1.3/subniche/man/margvect.Rd      |only
 subniche-1.4/subniche/DESCRIPTION          |   18 +-
 subniche-1.4/subniche/MD5                  |   49 +++---
 subniche-1.4/subniche/NAMESPACE            |    5 
 subniche-1.4/subniche/R/data.R             |    8 -
 subniche-1.4/subniche/R/eigenbar.R         |only
 subniche-1.4/subniche/R/plot.subniche.R    |  223 +++++++++++++++--------------
 subniche-1.4/subniche/R/plot_NR.R          |only
 subniche-1.4/subniche/R/plot_NR_sp.R       |only
 subniche-1.4/subniche/R/plot_dym.R         |   23 ++
 subniche-1.4/subniche/R/plot_dym_sp.R      |    2 
 subniche-1.4/subniche/R/subarea.R          |   12 +
 subniche-1.4/subniche/R/subniche.R         |    9 -
 subniche-1.4/subniche/R/subplot.R          |   22 +-
 subniche-1.4/subniche/R/subplot_K.R        |only
 subniche-1.4/subniche/R/subplot_sp.R       |    2 
 subniche-1.4/subniche/build                |only
 subniche-1.4/subniche/man/ardecheinv.Rd    |    4 
 subniche-1.4/subniche/man/drome.Rd         |    4 
 subniche-1.4/subniche/man/eigenbar.Rd      |only
 subniche-1.4/subniche/man/plot.subniche.Rd |   72 +++------
 subniche-1.4/subniche/man/plot_NR.Rd       |only
 subniche-1.4/subniche/man/plot_NR_sp.Rd    |only
 subniche-1.4/subniche/man/plot_dym.Rd      |   18 +-
 subniche-1.4/subniche/man/plot_dym_sp.Rd   |    2 
 subniche-1.4/subniche/man/subarea.Rd       |    7 
 subniche-1.4/subniche/man/subniche.Rd      |    7 
 subniche-1.4/subniche/man/subplot.Rd       |   13 +
 subniche-1.4/subniche/man/subplot_K.Rd     |only
 subniche-1.4/subniche/man/subplot_sp.Rd    |    2 
 31 files changed, 273 insertions(+), 229 deletions(-)

More information about subniche at CRAN
Permanent link

Package quantregGrowth updated to version 1.0-0 with previous version 0.4-3 dated 2018-09-20

Title: Growth Charts via Smooth Regression Quantiles with Automatic Smoothness Estimation and Additive Terms
Description: Fits non-crossing regression quantiles as a function of linear covariates and multiple smooth terms via B-splines with L1-norm difference penalties. The smoothing parameters are estimated as part of the model fitting. Monotonicity and concavity constraints on the fitted curves are allowed. See Muggeo, Sciandra, Tomasello and Calvo (2013) <doi:10.1007/s10651-012-0232-1> and <doi:10.13140/RG.2.2.12924.85122> for some code examples. Smoothing parameter selection with additive terms is discussed in Muggeo and others (2020) <doi:10.1177/1471082X20929802>.
Author: Vito M. R. Muggeo [aut, cre] (<https://orcid.org/0000-0002-3386-4054>)
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>

Diff between quantregGrowth versions 0.4-3 dated 2018-09-20 and 1.0-0 dated 2021-02-26

 quantregGrowth-0.4-3/quantregGrowth/R/gcrq.R                      |only
 quantregGrowth-0.4-3/quantregGrowth/R/ncross.rq.fitXB.R           |only
 quantregGrowth-1.0-0/quantregGrowth/DESCRIPTION                   |   14 
 quantregGrowth-1.0-0/quantregGrowth/MD5                           |   46 -
 quantregGrowth-1.0-0/quantregGrowth/NAMESPACE                     |    7 
 quantregGrowth-1.0-0/quantregGrowth/NEWS                          |   30 
 quantregGrowth-1.0-0/quantregGrowth/R/gcrq.r                      |only
 quantregGrowth-1.0-0/quantregGrowth/R/gcrq.rq.cv.R                |   42 -
 quantregGrowth-1.0-0/quantregGrowth/R/ncross.rq.fitX.R            |   17 
 quantregGrowth-1.0-0/quantregGrowth/R/ncross.rq.fitXB.r           |only
 quantregGrowth-1.0-0/quantregGrowth/R/plot.gcrq.R                 |  343 ++++++----
 quantregGrowth-1.0-0/quantregGrowth/R/predict.gcrq.R              |   49 +
 quantregGrowth-1.0-0/quantregGrowth/R/print.gcrq.R                |   38 -
 quantregGrowth-1.0-0/quantregGrowth/R/ps.R                        |   70 +-
 quantregGrowth-1.0-0/quantregGrowth/R/summary.gcrq.R              |   34 
 quantregGrowth-1.0-0/quantregGrowth/R/vcov.gcrq.r                 |   50 +
 quantregGrowth-1.0-0/quantregGrowth/inst/CITATION                 |   14 
 quantregGrowth-1.0-0/quantregGrowth/man/gcrq.Rd                   |  184 +++--
 quantregGrowth-1.0-0/quantregGrowth/man/ncross.rq.fitXB.Rd        |   70 +-
 quantregGrowth-1.0-0/quantregGrowth/man/plot.gcrq.Rd              |   58 +
 quantregGrowth-1.0-0/quantregGrowth/man/predict.gcrq.Rd           |   11 
 quantregGrowth-1.0-0/quantregGrowth/man/print.gcrq.Rd             |    2 
 quantregGrowth-1.0-0/quantregGrowth/man/ps.Rd                     |   71 +-
 quantregGrowth-1.0-0/quantregGrowth/man/quantregGrowth-package.Rd |   14 
 quantregGrowth-1.0-0/quantregGrowth/man/summary.gcrq.Rd           |    9 
 quantregGrowth-1.0-0/quantregGrowth/man/vcov.gcrq.Rd              |    9 
 26 files changed, 808 insertions(+), 374 deletions(-)

More information about quantregGrowth at CRAN
Permanent link

Package nilde updated to version 1.1-4 with previous version 1.1-3 dated 2019-09-02

Title: Nonnegative Integer Solutions of Linear Diophantine Equations with Applications
Description: Routines for enumerating all existing nonnegative integer solutions of a linear Diophantine equation. The package provides routines for solving 0-1, bounded and unbounded knapsack problems; 0-1, bounded and unbounded subset sum problems; additive partitioning of natural numbers; and one-dimensional bin-packing problem.
Author: Natalya Pya Arnqvist[aut, cre], Vassilly Voinov [aut], Rashid Makarov [aut], Yevgeniy Voinov [aut]
Maintainer: Natalya Pya Arnqvist <nat.pya@gmail.com>

Diff between nilde versions 1.1-3 dated 2019-09-02 and 1.1-4 dated 2021-02-26

 ChangeLog               |only
 DESCRIPTION             |    9 +++++----
 MD5                     |   29 ++++++++++++++++-------------
 NAMESPACE               |    3 +++
 R/knap.r                |   12 ++++++++----
 R/nlde.R                |    8 +++++---
 R/subsetsum.r           |    6 +++---
 R/tsp_solving.r         |only
 build/partial.rdb       |binary
 man/bin.packing.Rd      |    5 ++---
 man/get.knapsack.Rd     |    7 +++----
 man/get.partitions.Rd   |    2 +-
 man/get.subsetsum.Rd    |    2 +-
 man/nilde-package.Rd    |   10 ++++++----
 man/nlde.Rd             |    2 +-
 man/print.partitions.Rd |    4 +++-
 man/tsp_solver.Rd       |only
 17 files changed, 57 insertions(+), 42 deletions(-)

More information about nilde at CRAN
Permanent link

Package Microsoft365R updated to version 2.0.0 with previous version 1.0.0 dated 2021-01-27

Title: Interface to the 'Microsoft 365' Suite of Cloud Services
Description: An interface to the 'Microsoft 365' (formerly known as 'Office 365') suite of cloud services, building on the framework supplied by the 'AzureGraph' package. Enables access from R to data stored in 'Teams', 'SharePoint Online' and 'OneDrive', including the ability to list drive folder contents, upload and download files, send messages, and retrieve data lists.
Author: Hong Ooi [aut, cre], Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>

Diff between Microsoft365R versions 1.0.0 dated 2021-01-27 and 2.0.0 dated 2021-02-26

 Microsoft365R-1.0.0/Microsoft365R/R/ms_sharepoint_list.R                    |only
 Microsoft365R-1.0.0/Microsoft365R/inst/doc/Microsoft365R.Rmd                |only
 Microsoft365R-1.0.0/Microsoft365R/inst/doc/Microsoft365R.html               |only
 Microsoft365R-1.0.0/Microsoft365R/man/get_sharepoint_site.Rd                |only
 Microsoft365R-1.0.0/Microsoft365R/vignettes/Microsoft365R.Rmd               |only
 Microsoft365R-2.0.0/Microsoft365R/DESCRIPTION                               |   12 
 Microsoft365R-2.0.0/Microsoft365R/MD5                                       |   71 ++-
 Microsoft365R-2.0.0/Microsoft365R/NAMESPACE                                 |    9 
 Microsoft365R-2.0.0/Microsoft365R/NEWS.md                                   |only
 Microsoft365R-2.0.0/Microsoft365R/R/Microsoft365R.R                         |   13 
 Microsoft365R-2.0.0/Microsoft365R/R/add_methods.R                           |   86 +++-
 Microsoft365R-2.0.0/Microsoft365R/R/client.R                                |  180 +++++++--
 Microsoft365R-2.0.0/Microsoft365R/R/client_deprecated.R                     |only
 Microsoft365R-2.0.0/Microsoft365R/R/ms_channel.R                            |only
 Microsoft365R-2.0.0/Microsoft365R/R/ms_chat_message.R                       |only
 Microsoft365R-2.0.0/Microsoft365R/R/ms_drive.R                              |  137 +-----
 Microsoft365R-2.0.0/Microsoft365R/R/ms_drive_item.R                         |  199 +++++++++-
 Microsoft365R-2.0.0/Microsoft365R/R/ms_list.R                               |only
 Microsoft365R-2.0.0/Microsoft365R/R/ms_list_item.R                          |   29 -
 Microsoft365R-2.0.0/Microsoft365R/R/ms_site.R                               |   23 -
 Microsoft365R-2.0.0/Microsoft365R/R/ms_team.R                               |only
 Microsoft365R-2.0.0/Microsoft365R/README.md                                 |  110 ++---
 Microsoft365R-2.0.0/Microsoft365R/build/vignette.rds                        |binary
 Microsoft365R-2.0.0/Microsoft365R/inst/app_registration.md                  |only
 Microsoft365R-2.0.0/Microsoft365R/inst/doc/auth.Rmd                         |only
 Microsoft365R-2.0.0/Microsoft365R/inst/doc/auth.html                        |only
 Microsoft365R-2.0.0/Microsoft365R/inst/doc/od_sp.Rmd                        |only
 Microsoft365R-2.0.0/Microsoft365R/inst/doc/od_sp.html                       |only
 Microsoft365R-2.0.0/Microsoft365R/inst/doc/teams.Rmd                        |only
 Microsoft365R-2.0.0/Microsoft365R/inst/doc/teams.html                       |only
 Microsoft365R-2.0.0/Microsoft365R/man/Microsoft365R-deprecated.Rd           |only
 Microsoft365R-2.0.0/Microsoft365R/man/add_methods.Rd                        |only
 Microsoft365R-2.0.0/Microsoft365R/man/client.Rd                             |  122 ++++--
 Microsoft365R-2.0.0/Microsoft365R/man/ms_channel.Rd                         |only
 Microsoft365R-2.0.0/Microsoft365R/man/ms_chat_message.Rd                    |only
 Microsoft365R-2.0.0/Microsoft365R/man/ms_drive.Rd                           |   44 --
 Microsoft365R-2.0.0/Microsoft365R/man/ms_drive_item.Rd                      |   58 ++
 Microsoft365R-2.0.0/Microsoft365R/man/ms_list.Rd                            |   18 
 Microsoft365R-2.0.0/Microsoft365R/man/ms_list_item.Rd                       |    6 
 Microsoft365R-2.0.0/Microsoft365R/man/ms_site.Rd                            |    7 
 Microsoft365R-2.0.0/Microsoft365R/man/ms_team.Rd                            |only
 Microsoft365R-2.0.0/Microsoft365R/tests/resources/logo_small.jpg            |only
 Microsoft365R-2.0.0/Microsoft365R/tests/testthat/setup.R                    |    3 
 Microsoft365R-2.0.0/Microsoft365R/tests/testthat/test01_onedrive.R          |   87 ++++
 Microsoft365R-2.0.0/Microsoft365R/tests/testthat/test02_business_onedrive.R |   89 ++++
 Microsoft365R-2.0.0/Microsoft365R/tests/testthat/test03_sharepoint.R        |   49 +-
 Microsoft365R-2.0.0/Microsoft365R/tests/testthat/test04_teams.R             |only
 Microsoft365R-2.0.0/Microsoft365R/tests/testthat/test04a_channel.R          |only
 Microsoft365R-2.0.0/Microsoft365R/vignettes/auth.Rmd                        |only
 Microsoft365R-2.0.0/Microsoft365R/vignettes/od_sp.Rmd                       |only
 Microsoft365R-2.0.0/Microsoft365R/vignettes/teams.Rmd                       |only
 51 files changed, 946 insertions(+), 406 deletions(-)

More information about Microsoft365R at CRAN
Permanent link

Package lcc updated to version 1.1.2 with previous version 1.1.1 dated 2020-09-13

Title: Longitudinal Concordance Correlation
Description: Estimates the longitudinal concordance correlation to access the longitudinal agreement profile. The estimation approach implemented is variance components approach based on polynomial mixed effects regression model, as proposed by Oliveira, Hinde and Zocchi (2018) <doi:10.1007/s13253-018-0321-1>. In addition, non-parametric confidence intervals were implemented using percentile method or normal-approximation based on Fisher Z-transformation.
Author: Thiago de Paula Oliveira [aut, cre] (<https://orcid.org/0000-0002-4555-2584>), Rafael de Andrade Moral [aut] (<https://orcid.org/0000-0002-0875-3563>), Silvio Sandoval Zocchi [ctb] (<https://orcid.org/0000-0003-2535-908X>), Clarice Garcia Borges Demetrio [ctb] (<https://orcid.org/0000-0002-3609-178X>), John Hinde [aut] (<https://orcid.org/0000-0001-6507-5204>)
Maintainer: Thiago de Paula Oliveira <thiago.paula.oliveira@alumni.usp.br>

Diff between lcc versions 1.1.1 dated 2020-09-13 and 1.1.2 dated 2021-02-26

 DESCRIPTION |   34 ++++++++++++++++++++++++----------
 MD5         |    5 +++--
 R/lcc.R     |    4 ++++
 inst        |only
 4 files changed, 31 insertions(+), 12 deletions(-)

More information about lcc at CRAN
Permanent link

Package gausscov updated to version 0.0.13 with previous version 0.0.12 dated 2021-01-27

Title: The Gaussian Covariate Method for Variable Selection
Description: Given the standard linear model the traditional way of deciding whether to include the jth covariate is to apply the F-test to decide whether the corresponding beta coefficient is zero. The Gaussian covariate method is completely different. The question as to whether the beta coefficient is or is not zero is replaced by the question as to whether the covariate is better or worse than i.i.d. Gaussian noise. The P-value for the covariate is the probability that Gaussian noise is better. Surprisingly this can be given exactly and it is the same a the P-value for the classical model based on the F-distribution. The Gaussian covariate P-value is model free, it is the same for any data set. Using the idea it is possible to do covariate selection for a small number of covariates 25 by considering all subsets. Post selection inference causes no problems as the P-values hold whatever the data. The idea extends to stepwise regression again with exact probabilities. In the simplest version the only parameter is a specified cut-off P-value which can be interpreted as the probability of a false positive being included in the final selection. For more information see the website below and the accompanying papers: L. Davies and L. Duembgen, "Covariate Selection Based on a Model-free Approach to Linear Regression with Exact Probabilities", 2020, <arXiv:1906.01990>. L. Davies, "Lasso, Knockoff and Gaussian covariates: A comparison", 2018, <arXiv:1807.09633>.
Author: Laurie Davies [aut, cre]
Maintainer: Laurie Davies <laurie.davies@uni-due.de>

Diff between gausscov versions 0.0.12 dated 2021-01-27 and 0.0.13 dated 2021-02-26

 gausscov-0.0.12/gausscov/data/dentx.rda   |only
 gausscov-0.0.12/gausscov/data/denty.rda   |only
 gausscov-0.0.12/gausscov/man/dentx.Rd     |only
 gausscov-0.0.12/gausscov/man/denty.Rd     |only
 gausscov-0.0.13/gausscov/DESCRIPTION      |    8 
 gausscov-0.0.13/gausscov/MD5              |   60 ++---
 gausscov-0.0.13/gausscov/R/decode.R       |   28 +-
 gausscov-0.0.13/gausscov/R/decomp.R       |    8 
 gausscov-0.0.13/gausscov/R/f1st.R         |   47 ++--
 gausscov-0.0.13/gausscov/R/f2st.R         |   38 +--
 gausscov-0.0.13/gausscov/R/fgeninter.R    |   12 -
 gausscov-0.0.13/gausscov/R/fgentrig.R     |    4 
 gausscov-0.0.13/gausscov/R/fgr1st.R       |   13 -
 gausscov-0.0.13/gausscov/R/fgr2st.R       |   12 -
 gausscov-0.0.13/gausscov/R/fmch.R         |   45 ++-
 gausscov-0.0.13/gausscov/R/fpval.R        |   16 -
 gausscov-0.0.13/gausscov/R/frmch.R        |    3 
 gausscov-0.0.13/gausscov/R/frobreg.R      |   12 -
 gausscov-0.0.13/gausscov/R/frobregp.R     |   23 +
 gausscov-0.0.13/gausscov/R/frst.R         |   32 +-
 gausscov-0.0.13/gausscov/R/fselect.R      |   10 
 gausscov-0.0.13/gausscov/R/fsimords.R     |   12 -
 gausscov-0.0.13/gausscov/man/decode.Rd    |   12 -
 gausscov-0.0.13/gausscov/man/decomp.Rd    |    2 
 gausscov-0.0.13/gausscov/man/f1st.Rd      |    7 
 gausscov-0.0.13/gausscov/man/f2st.Rd      |    9 
 gausscov-0.0.13/gausscov/man/fgeninter.Rd |    4 
 gausscov-0.0.13/gausscov/man/fgr1st.Rd    |    6 
 gausscov-0.0.13/gausscov/man/fgr2st.Rd    |    6 
 gausscov-0.0.13/gausscov/man/fmch.Rd      |    7 
 gausscov-0.0.13/gausscov/man/frst.Rd      |    2 
 gausscov-0.0.13/gausscov/man/fselect.Rd   |    8 
 gausscov-0.0.13/gausscov/src/gaucov.f     |  349 ++++++++++++++++++++++++++----
 33 files changed, 550 insertions(+), 245 deletions(-)

More information about gausscov at CRAN
Permanent link

Package plot3logit updated to version 3.1.0 with previous version 3.0.0 dated 2020-09-12

Title: Ternary Plots for Trinomial Regression Models
Description: An implementation of the ternary plot for interpreting regression coefficients of trinomial regression models, as proposed in Santi, Dickson and Espa (2019) <doi:10.1080/00031305.2018.1442368>. Ternary plots can be drawn using either 'ggtern' package (based on 'ggplot2') or 'Ternary' package (based on standard graphics).
Author: Flavio Santi [cre, aut] (<https://orcid.org/0000-0002-2014-1981>), Maria Michela Dickson [aut] (<https://orcid.org/0000-0002-4307-0469>), Giuseppe Espa [aut] (<https://orcid.org/0000-0002-0331-3630>), Diego Giuliani [aut] (<https://orcid.org/0000-0002-7198-6714>)
Maintainer: Flavio Santi <flavio.santi@univr.it>

Diff between plot3logit versions 3.0.0 dated 2020-09-12 and 3.1.0 dated 2021-02-26

 plot3logit-3.0.0/plot3logit/man/autoplot.field3logit.Rd       |only
 plot3logit-3.1.0/plot3logit/DESCRIPTION                       |    8 
 plot3logit-3.1.0/plot3logit/MD5                               |   55 -
 plot3logit-3.1.0/plot3logit/NAMESPACE                         |    4 
 plot3logit-3.1.0/plot3logit/NEWS.md                           |   33 
 plot3logit-3.1.0/plot3logit/R/conf_region.R                   |   54 
 plot3logit-3.1.0/plot3logit/R/delta.R                         |   41 
 plot3logit-3.1.0/plot3logit/R/field3logit.R                   |   12 
 plot3logit-3.1.0/plot3logit/R/ggtern.R                        |    7 
 plot3logit-3.1.0/plot3logit/R/multifield3logit.R              |    2 
 plot3logit-3.1.0/plot3logit/R/plot3logit-package.R            |    7 
 plot3logit-3.1.0/plot3logit/R/test-aux.R                      |    9 
 plot3logit-3.1.0/plot3logit/README.md                         |    4 
 plot3logit-3.1.0/plot3logit/build/partial.rdb                 |binary
 plot3logit-3.1.0/plot3logit/build/vignette.rds                |binary
 plot3logit-3.1.0/plot3logit/inst/CITATION                     |    7 
 plot3logit-3.1.0/plot3logit/inst/REFERENCES.bib               |   50 
 plot3logit-3.1.0/plot3logit/inst/doc/plot3logit-overview.Rmd  |  210 +++
 plot3logit-3.1.0/plot3logit/inst/doc/plot3logit-overview.html |  550 ++++++----
 plot3logit-3.1.0/plot3logit/man/add_confregions.Rd            |   55 +
 plot3logit-3.1.0/plot3logit/man/autoplot.Hfield3logit.Rd      |only
 plot3logit-3.1.0/plot3logit/man/gg3logit.Rd                   |    2 
 plot3logit-3.1.0/plot3logit/man/plot3logit-package.Rd         |    2 
 plot3logit-3.1.0/plot3logit/man/reexports.Rd                  |    2 
 plot3logit-3.1.0/plot3logit/man/stat_3logit.Rd                |    2 
 plot3logit-3.1.0/plot3logit/man/stat_conf3logit.Rd            |    2 
 plot3logit-3.1.0/plot3logit/man/stat_field3logit.Rd           |    2 
 plot3logit-3.1.0/plot3logit/tests/testthat/test-labels.R      |only
 plot3logit-3.1.0/plot3logit/tests/testthat/test-read_delta.R  |   65 +
 plot3logit-3.1.0/plot3logit/vignettes/plot3logit-overview.Rmd |  210 +++
 30 files changed, 1028 insertions(+), 367 deletions(-)

More information about plot3logit at CRAN
Permanent link

Package SARP.moodle updated to version 0.8.7 with previous version 0.8.6 dated 2021-01-06

Title: XML Output Functions for Easy Creation of Moodle Questions
Description: Provides a set of basic functions for creating Moodle XML output files suited for importing questions in Moodle (a learning management system, see <https://moodle.org/> for more information).
Author: Emmanuel Curis [aut, cre, cph] (<https://orcid.org/0000-0001-8382-1493>), Virginie Lasserre [ctb]
Maintainer: Emmanuel Curis <emmanuel.curis@parisdescartes.fr>

Diff between SARP.moodle versions 0.8.6 dated 2021-01-06 and 0.8.7 dated 2021-02-26

 DESCRIPTION         |    8 ++++----
 MD5                 |   10 +++++-----
 R/affichages.R      |    4 +++-
 R/images.R          |    6 ++++--
 R/sortie_R.R        |    6 ++++--
 man/libre.moodle.Rd |    4 ++--
 6 files changed, 22 insertions(+), 16 deletions(-)

More information about SARP.moodle at CRAN
Permanent link

Package rminizinc updated to version 0.0.6 with previous version 0.0.5 dated 2021-01-27

Title: R Interface to 'MiniZinc'
Description: Constraint optimization, or constraint programming, is the name given to identifying feasible solutions out of a very large set of candidates, where the problem can be modeled in terms of arbitrary constraints. 'MiniZinc' is a free and open-source constraint modeling language. Constraint satisfaction and discrete optimization problems can be formulated in a high-level modeling language. Models are compiled into an intermediate representation that is understood by a wide range of solvers. 'MiniZinc' itself provides several solvers, for instance 'GeCode'. R users can use the package to solve constraint programming problems without using 'MiniZinc' directly, modify existing 'MiniZinc' models and also create their own models.
Author: Akshit Achara, Lars Kotthoff, Hans W. Borchers, Guido Tack
Maintainer: Akshit Achara <acharaakshit@gmail.com>

Diff between rminizinc versions 0.0.5 dated 2021-01-27 and 0.0.6 dated 2021-02-26

 DESCRIPTION                    |    8 
 MD5                            |   80 +--
 NAMESPACE                      |    4 
 NEWS.md                        |   18 
 R/CommonMZNProblems.R          |  268 ++++++++++++
 R/DeclFunctions.R              |   35 +
 R/Expression.R                 |   64 +-
 R/SolveItem.R                  |    2 
 R/utils.R                      |    9 
 configure                      |   18 
 configure.ac                   |    2 
 configure.win                  |   18 
 data/proot.RData               |binary
 inst/doc/R_MiniZinc.R          |  301 +++++++++-----
 inst/doc/R_MiniZinc.Rmd        |  449 ++++++++++++++-------
 inst/doc/R_MiniZinc.html       |  875 +++++++++++++++++++++++++++--------------
 man/BinOp.Rd                   |    5 
 man/BoolArrDecl.Rd             |    2 
 man/BoolDecl.Rd                |    2 
 man/BoolSetDecl.Rd             |    2 
 man/FloatDecl.Rd               |    4 
 man/FloatSetDecl.Rd            |    2 
 man/IntArrDecl.Rd              |    2 
 man/IntDecl.Rd                 |    4 
 man/IntSetDecl.Rd              |    2 
 man/Let.Rd                     |   16 
 man/SolveItem.Rd               |    2 
 man/StringArrDecl.Rd           |    4 
 man/StringSetDecl.Rd           |    2 
 man/TypeInst.Rd                |    2 
 man/UnOp.Rd                    |    2 
 man/VarDecl.Rd                 |    2 
 man/assignment.Rd              |    2 
 man/assignment_2.Rd            |only
 man/magic_series.Rd            |only
 man/magic_square.Rd            |only
 man/production_planning.Rd     |only
 man/rminizinc-package.Rd       |    2 
 src/Makevars.in                |    6 
 src/mzn_eval.cpp               |    2 
 src/mzn_parse.cpp              |    2 
 tests/testthat/test_problems.R |   12 
 vignettes/R_MiniZinc.Rmd       |  449 ++++++++++++++-------
 43 files changed, 1857 insertions(+), 824 deletions(-)

More information about rminizinc at CRAN
Permanent link

New package secure with initial version 0.6
Package: secure
Type: Package
Title: Sequential Co-Sparse Factor Regression
Version: 0.6
Date: 2021-02-22
Author: Aditya Mishra [aut, cre], Kun Chen [aut, cre]
Maintainer: Aditya Mishra <aditya.mishra@uconn.edu>
Description: Sequential factor extraction via co-sparse unit-rank estimation (SeCURE).
Depends: R (>= 3.3.1),stats, utils
Imports: Rcpp (>= 0.12.9), MASS
License: GPL (>= 3.0)
LazyData: TRUE
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
RoxygenNote: 5.0.1
Packaged: 2021-02-26 03:13:37 UTC; amishra
Repository: CRAN
Date/Publication: 2021-02-26 10:10:02 UTC

More information about secure at CRAN
Permanent link

New package rhcoclust with initial version 1.1.0
Package: rhcoclust
Title: Robust Hierarchical Co-Clustering to Identify Significant Co-Cluster
Version: 1.1.0
Authors@R: c(person("Md. Bahadur", "Badsha", role = c("aut", "cre"), email = "mbbadshar@gmail.com"), person("Mohammad Nazmol", "Hasan", role = "aut"), person("Md. Nurul Haque", "Mollah", role = "aut"))
Description: Here we performs robust hierarchical co-clustering between row and column entities of a data matrix in absence and presence of outlying observations. It can be used to explore important co-clusters consisting of important samples and their regulatory significant features. Please see Hasan, Badsha and Mollah (2020) <doi:10.1101/2020.05.13.094946>.
License: GPL (>= 2)
Depends: R (>= 3.0.0)
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Imports: fields, grDevices, graphics, igraph, stats
RoxygenNote: 7.1.0
Packaged: 2021-02-26 03:19:52 UTC; mdbadsha
Author: Md. Bahadur Badsha [aut, cre], Mohammad Nazmol Hasan [aut], Md. Nurul Haque Mollah [aut]
Maintainer: Md. Bahadur Badsha <mbbadshar@gmail.com>
Repository: CRAN
Date/Publication: 2021-02-26 10:10:05 UTC

More information about rhcoclust at CRAN
Permanent link

New package mfaces with initial version 0.1-2
Package: mfaces
Title: Fast Covariance Estimation for Multivariate Sparse Functional Data
Version: 0.1-2
Date: 2021-02-24
Author: Cai Li [aut,cre] and Luo Xiao [aut]
Maintainer: Cai Li <cli9@ncsu.edu>
Description: Multivariate functional principal component analysis via fast covariance estimation for multivariate sparse functional data or longitudinal data proposed by Li, Xiao, and Luo (2020) <doi:10.1002/sta4.245>.
Depends: R (>= 2.1.4)
Imports: stats, splines, Matrix, matrixcalc, mgcv, face
License: GPL-3
LazyLoad: yes
LazyData: true
Repository: CRAN
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-25 00:31:01 UTC; cli9
Date/Publication: 2021-02-26 10:30:02 UTC

More information about mfaces at CRAN
Permanent link

New package gtsummary with initial version 1.3.7
Package: gtsummary
Title: Presentation-Ready Data Summary and Analytic Result Tables
Version: 1.3.7
Authors@R: c(person(given = "Daniel D.", family = "Sjoberg", role = c("aut", "cre"), email = "danield.sjoberg@gmail.com", comment = c(ORCID = "0000-0003-0862-2018")), person(given = "Michael", family = "Curry", role = "aut", comment = c(ORCID = "0000-0002-0261-4044")), person(given = "Margie", family = "Hannum", role = "aut", comment = c(ORCID = "0000-0002-2953-0449")), person(given = "Karissa", family = "Whiting", role = "aut", comment = c(ORCID = "0000-0002-4683-1868")), person(given = "Emily C.", family = "Zabor", role = "aut", comment = c(ORCID = "0000-0002-1402-4498")), person(given = "Esther", family = "Drill", role = "ctb", comment = c(ORCID = "0000-0002-3315-4538")), person(given = "Jessica", family = "Flynn", role = "ctb", comment = c(ORCID = "0000-0001-8310-6684")), person(given = "Joseph", family = "Larmarange", role = "ctb", comment = c(ORCID = "0000-0001-7097-700X")), person(given = "Jessica", family = "Lavery", role = "ctb", comment = c(ORCID = "0000-0002-2746-5647")), person(given = "Stephanie", family = "Lobaugh", role = "ctb"), person(given = "Gustavo", family = "Zapata Wainberg", role = "ctb", comment = c(ORCID = "0000-0002-2524-3637")))
Description: Creates presentation-ready tables summarizing data sets, regression models, and more. The code to create the tables is concise and highly customizable. Data frames can be summarized with any function, e.g. mean(), median(), even user-written functions. Regression models are summarized and include the reference rows for categorical variables. Common regression models, such as logistic regression and Cox proportional hazards regression, are automatically identified and the tables are pre-filled with appropriate column headers.
License: MIT + file LICENSE
URL: https://github.com/ddsjoberg/gtsummary, http://www.danieldsjoberg.com/gtsummary/
BugReports: https://github.com/ddsjoberg/gtsummary/issues
Depends: R (>= 3.4)
Imports: broom (>= 0.7.3), broom.helpers (>= 1.1.0), dplyr (>= 1.0.1), forcats (>= 0.5.0), glue (>= 1.4.1), gt (>= 0.2.2), knitr (>= 1.29), lifecycle (>= 0.2.0), purrr (>= 0.3.4), rlang (>= 0.4.10), stringr (>= 1.4.0), survival, tibble (>= 3.0.3), tidyr (>= 1.1.1), usethis (>= 1.6.1)
Suggests: broom.mixed (>= 0.2.6), car, covr, effectsize, flextable (>= 0.5.10), geepack, Hmisc, huxtable (>= 5.0.0), kableExtra, lme4, mice, nnet, officer, parameters, pkgdown, rmarkdown, scales, spelling (>= 2.2), survey, testthat
VignetteBuilder: knitr
RdMacros: lifecycle
Encoding: UTF-8
Language: en-US
LazyData: true
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-26 10:20:43 UTC; SjobergD
Author: Daniel D. Sjoberg [aut, cre] (<https://orcid.org/0000-0003-0862-2018>), Michael Curry [aut] (<https://orcid.org/0000-0002-0261-4044>), Margie Hannum [aut] (<https://orcid.org/0000-0002-2953-0449>), Karissa Whiting [aut] (<https://orcid.org/0000-0002-4683-1868>), Emily C. Zabor [aut] (<https://orcid.org/0000-0002-1402-4498>), Esther Drill [ctb] (<https://orcid.org/0000-0002-3315-4538>), Jessica Flynn [ctb] (<https://orcid.org/0000-0001-8310-6684>), Joseph Larmarange [ctb] (<https://orcid.org/0000-0001-7097-700X>), Jessica Lavery [ctb] (<https://orcid.org/0000-0002-2746-5647>), Stephanie Lobaugh [ctb], Gustavo Zapata Wainberg [ctb] (<https://orcid.org/0000-0002-2524-3637>)
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Repository: CRAN
Date/Publication: 2021-02-26 11:00:02 UTC

More information about gtsummary at CRAN
Permanent link

Package Bestie updated to version 0.1.2 with previous version 0.1.1 dated 2020-03-30

Title: Bayesian Estimation of Intervention Effects
Description: An implementation of intervention effect estimation for DAGs (directed acyclic graphs) learned from binary data. First, parameters are estimated or sampled for the DAG and then interventions on each node (variable) are propagated through the network (do-calculus). Both exact computation (up to around 20 variables) and Monte Carlo schemes (for larger networks) are implemented.
Author: Jack Kuipers [aut,cre] and Giusi Moffa [aut]
Maintainer: Jack Kuipers <jack.kuipers@bsse.ethz.ch>

Diff between Bestie versions 0.1.1 dated 2020-03-30 and 0.1.2 dated 2021-02-26

 DESCRIPTION              |   10 +++++-----
 MD5                      |   10 +++++-----
 R/interventionest.R      |    2 +-
 R/interventionestMC.R    |    2 +-
 man/DAGintervention.Rd   |    2 +-
 man/DAGinterventionMC.Rd |    2 +-
 6 files changed, 14 insertions(+), 14 deletions(-)

More information about Bestie at CRAN
Permanent link

Package benchmarkme updated to version 1.0.6 with previous version 1.0.5 dated 2021-02-09

Title: Crowd Sourced System Benchmarks
Description: Benchmark your CPU and compare against other CPUs. Also provides functions for obtaining system specifications, such as RAM, CPU type, and R version.
Author: Colin Gillespie [aut, cre] (<https://orcid.org/0000-0003-1787-0275>)
Maintainer: Colin Gillespie <csgillespie@gmail.com>

Diff between benchmarkme versions 1.0.5 dated 2021-02-09 and 1.0.6 dated 2021-02-26

 DESCRIPTION                  |    6 +++---
 MD5                          |   11 ++++++-----
 NEWS.md                      |    3 +++
 R/get_cpu.R                  |    4 ++--
 R/get_ram.R                  |    4 ++--
 R/utils-sysctl.R             |only
 inst/doc/a_introduction.html |    9 ++++++++-
 7 files changed, 24 insertions(+), 13 deletions(-)

More information about benchmarkme at CRAN
Permanent link

New package twangContinuous with initial version 1.0.0
Package: twangContinuous
Type: Package
Date: 2021-02-15
Title: Toolkit for Weighting and Analysis of Nonequivalent Groups - Continuous Exposures
Version: 1.0.0
Authors@R: c( person("Donna", "Coffman", email = "donna.coffman@gmail.com", role=c("aut", "cre"), comment = c(ORCID = "0000-0001-6305-6579")), person("Brian", "Vegetabile", role = c("ctb")))
Description: Provides functions for propensity score estimation and weighting for continuous exposures as described in Zhu, Y., Coffman, D. L., & Ghosh, D. (2015). A boosting algorithm for estimating generalized propensity scores with continuous treatments. Journal of Causal Inference, 3(1), 25-40. <doi:10.1515/jci-2014-0022>.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Imports: Rcpp (>= 0.12.19), lattice (>= 0.20-35), gbm (>= 2.1.3), survey, xtable
Suggests: knitr, rmarkdown
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-24 16:38:26 UTC; tug76052
Author: Donna Coffman [aut, cre] (<https://orcid.org/0000-0001-6305-6579>), Brian Vegetabile [ctb]
Maintainer: Donna Coffman <donna.coffman@gmail.com>
Depends: R (>= 3.5.0)
Repository: CRAN
Date/Publication: 2021-02-26 09:50:02 UTC

More information about twangContinuous at CRAN
Permanent link

New package tci with initial version 0.1.0
Package: tci
Title: Target Controlled Infusion (TCI)
Version: 0.1.0
Authors@R: person("Ryan", "Jarrett", email = "ryan.t.jarrett@vanderbilt.edu", role = c("aut", "cre"))
Description: Implementation of target-controlled infusion algorithms for compartmental pharmacokinetic and pharmacokinetic-pharmacodynamic models. Jacobs (1990) <doi:10.1109/10.43622>; Marsh et al. (1991) <doi:10.1093/bja/67.1.41>; Shafer and Gregg (1993) <doi:10.1007/BF01070999>; Schnider et al. (1998) <doi:10.1097/00000542-199805000-00006>; Abuhelwa, Foster, and Upton (2015) <doi:10.1016/j.vascn.2015.03.004>; Eleveld et al. (2018) <doi:10.1016/j.bja.2018.01.018>.
Depends: R (>= 3.6.0)
License: GPL-2
Encoding: UTF-8
LazyData: true
URL: https://github.com/jarretrt/tci
BugReports: https://github.com/jarretrt/tci/issues
Imports: ggplot2, stats, utils, graphics, truncnorm, mvtnorm, gridExtra, reshape
Suggests: testthat (>= 2.1.0), knitr, rmarkdown, mrgsolve
RoxygenNote: 7.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-02-24 15:53:21 UTC; ryanjarrett
Author: Ryan Jarrett [aut, cre]
Maintainer: Ryan Jarrett <ryan.t.jarrett@vanderbilt.edu>
Repository: CRAN
Date/Publication: 2021-02-26 09:30:02 UTC

More information about tci at CRAN
Permanent link

New package rheroicons with initial version 0.3.1
Package: rheroicons
Title: A Zero Dependency 'SVG' Icon Library for 'Shiny'
Version: 0.3.1
Authors@R: c( person( given = "David", family = "Ruvolo", role = c("aut", "cre"), email = "dcruvolo@gmail.com", comment = c(ORCID = "0000-0002-5745-5298")), person( given = "Adam", family = "Wathan", role = c("ctb", "cph"), comment = "Author of heroicons library"), person( given = "Steve", family = "Schoger", role = c("ctb", "cph"), comment = "Author of heroicons library") )
Description: An implementation of the 'Heroicons' icon library for 'shiny' applications and other 'R' web-based projects. You can search, render, and customize icons without 'CSS' or 'JavaScript' dependencies.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Imports: htmltools (>= 0.5.0), shiny (>= 1.5.0), stringr
Suggests: spelling, testthat
Depends: R (>= 2.10)
Language: en-US
NeedsCompilation: no
Packaged: 2021-02-13 15:34:45 UTC; davidruvolo
Author: David Ruvolo [aut, cre] (<https://orcid.org/0000-0002-5745-5298>), Adam Wathan [ctb, cph] (Author of heroicons library), Steve Schoger [ctb, cph] (Author of heroicons library)
Maintainer: David Ruvolo <dcruvolo@gmail.com>
Repository: CRAN
Date/Publication: 2021-02-26 10:00:03 UTC

More information about rheroicons at CRAN
Permanent link

New package QKPIs with initial version 1.0
Package: QKPIs
Type: Package
Title: Quantitative Key Performance Indicators
Version: 1.0
Date: 2021-02-23
Authors@R: c(person("Abubakar", "Akanbi", role = c("aut", "cre"), email = "abbiod@hotmail.com"))
Author: Abubakar Akanbi [aut, cre]
Maintainer: Abubakar Akanbi <abbiod@hotmail.com>
Description: It calculates key performance indicators as quantitative metrics for sales and overall labour effectiveness. Wikipedia (2021) <https://en.wikipedia.org/wiki/Overall_labor_effectiveness>.
License: GPL-2
NeedsCompilation: no
Packaged: 2021-02-24 16:45:58 UTC; abu
Repository: CRAN
Date/Publication: 2021-02-26 09:50:12 UTC

More information about QKPIs at CRAN
Permanent link

Package nntrf updated to version 0.1.4 with previous version 0.1.3 dated 2020-08-06

Title: Supervised Data Transformation by Means of Neural Network Hidden Layer
Description: A supervised transformation of datasets is performed. The aim is similar to that of Principal Component Analysis (PCA), that is, to carry out data transformation and dimensionality reduction, but in a supervised way. This is achieved by first training a 3-layer Multi-Layer Perceptron and then using the activations of the hidden layer as a transformation of the input features. In fact, it takes advantage of the change of representation provided by the hidden layer of a neural network. This can be useful as data pre-processing for Machine Learning methods in general, specially for those that do not work well with many irrelevant or redundant features. It uses the nnet package under the hood. Valls, J.M., Aler, R., Galvan, I.M., and Camacho, D. (2021). "Supervised data transformation and dimensionality reduction with a 3-layer multi-layer perceptron for classification problems". <doi:10.1007/s12652-020-02841-y> Rumelhart, D.E., Hinton, G.E. and Williams, R.J. (1986) "Learning representations by back-propagating errors" <doi:10.1038/323533a0>.
Author: Ricardo Aler [aut, cre], Jose Valls [aut], Ines Galvan [aut], David Camacho [aut]
Maintainer: Ricardo Aler <ricardo.aler@uc3m.es>

Diff between nntrf versions 0.1.3 dated 2020-08-06 and 0.1.4 dated 2021-02-26

 DESCRIPTION                   |    7 ++++---
 MD5                           |   18 +++++++++---------
 inst/doc/nntrf.html           |    4 ++--
 inst/doc/nntrf_regresion.Rmd  |    2 +-
 inst/doc/nntrf_regresion.html |    6 +++---
 inst/doc/nntrf_tuning.R       |    1 -
 inst/doc/nntrf_tuning.Rmd     |    1 -
 inst/doc/nntrf_tuning.html    |    5 ++---
 vignettes/nntrf_regresion.Rmd |    2 +-
 vignettes/nntrf_tuning.Rmd    |    1 -
 10 files changed, 22 insertions(+), 25 deletions(-)

More information about nntrf at CRAN
Permanent link

New package MDMAPR with initial version 0.1.0
Package: MDMAPR
Type: Package
Title: Molecular Detection Mapping and Analysis Platform
Version: 0.1.0
Author: Alka Benawra <alkabenawra@rogers.com>
Maintainer: Alka Benawra <alkabenawra@rogers.com>
Description: Runs a Shiny web application that merges raw 'qPCR' fluorescence data with related metadata to visualize species presence/absence detection patterns and assess data quality. The application calculates threshold values from raw fluorescence data using a method based on the second derivative method, Luu-The et al (2005) <doi:10.2144/05382RR05>, and utilizes the ‘chipPCR’ package by Rödiger, Burdukiewicz, & Schierack (2015) <doi:10.1093/bioinformatics/btv205> to calculate Cq values. The application has the ability to connect to a custom developed MySQL database to populate the applications interface. The application allows users to interact with visualizations such as a dynamic map, amplification curves and standard curves, that allow for zooming and/or filtering. It also enables the generation of customized exportable reports based on filtered mapping data.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
URL: https://github.com/AlkaBenawra/MDMAPR
BugReports: https://github.com/AlkaBenawra/MDMAPR/issues
Imports: RMySQL, shinydashboard, DBI, DT, leaflet, leaflet.extras, shinyjs, ggplot2, dplyr, readxl, plotly, reactable, writexl, xfun, berryFunctions, shinyWidgets, shiny, htmltools, methods, utils, stats
NeedsCompilation: no
Packaged: 2021-02-24 18:39:03 UTC; alkabenawra
Repository: CRAN
Date/Publication: 2021-02-26 10:00:06 UTC

More information about MDMAPR at CRAN
Permanent link

Package matrixdist updated to version 1.0.2 with previous version 1.0.1 dated 2021-02-15

Title: Statistics for Matrix Distributions
Description: Tools for homogeneous and in-homogeneous phase-type distributions. Methods for functional evaluation, simulation and estimation using the expectation-maximization (EM) algorithm are provided. The methods of this package are based on the following references. Asmussen, S., Nerman, O., & Olsson, M. (1996) <https://www.jstor.org/stable/4616418>, Olsson, M. (1996) <https://www.jstor.org/stable/4616419>. Albrecher, H., & Bladt, M. (2019) <doi:10.1017/jpr.2019.60> Albrecher, H., Bladt, M., & Yslas, J. (2020) <doi:10.1111/sjos.12505> Bladt, M., & Yslas, J. (2020) <arXiv:2011.03219>.
Author: Martin Bladt [aut, cre], Jorge Yslas [aut]
Maintainer: Martin Bladt <martinbladt@gmail.com>

Diff between matrixdist versions 1.0.1 dated 2021-02-15 and 1.0.2 dated 2021-02-26

 DESCRIPTION             |    8 ++++----
 MD5                     |    6 +++---
 R/1.ph.R                |   12 ++++++------
 man/moment-ph-method.Rd |    4 ++--
 4 files changed, 15 insertions(+), 15 deletions(-)

More information about matrixdist at CRAN
Permanent link

New package fastRG with initial version 0.3.0
Package: fastRG
Title: Sample Generalized Random Dot Product Graphs in Linear Time
Version: 0.3.0
Authors@R: c(person(given = "Alex", family = "Hayes", role = c("aut", "cre", "cph"), email = "alexpghayes@gmail.com", comment = c(ORCID = "0000-0002-4985-5160")), person(given = "Karl", family = "Rohe", role = c("aut", "cph"), email = "KarlRohe@stat.wisc.edu"), person(given = "Jun", family = "Tao", role = "aut"), person(given = "Xintian", family = "Han", role = "aut"), person(given = "Norbert", family = "Binkiewicz", role = "aut"))
Description: Samples generalized random product graph, a generalization of a broad class of network models. Given matrices X, S, and Y with with non-negative entries, samples a matrix with expectation X S Y^T and independent Poisson or Bernoulli entries. The algorithm first samples the number of edges and then puts them down one-by-one. As a result it is O(m) where m is the number of edges, a dramatic improvement over element-wise algorithms that which require O(n^2) operations to sample a random graph, where n is the number of nodes.
License: MIT + file LICENSE
URL: https://github.com/RoheLab/fastRG
BugReports: https://github.com/RoheLab/fastRG/issues
Depends: Matrix
Imports: ellipsis, glue, igraph, magrittr, RSpectra, stats, tibble, tidygraph
Suggests: covr, dplyr, ggplot2, knitr, rmarkdown, testthat (>= 2.1.0)
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-24 16:05:47 UTC; alex
Author: Alex Hayes [aut, cre, cph] (<https://orcid.org/0000-0002-4985-5160>), Karl Rohe [aut, cph], Jun Tao [aut], Xintian Han [aut], Norbert Binkiewicz [aut]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Repository: CRAN
Date/Publication: 2021-02-26 09:40:03 UTC

More information about fastRG at CRAN
Permanent link

Package TwoArmSurvSim updated to version 0.2 with previous version 0.1 dated 2020-12-16

Title: Simulate Survival Data for Randomized Clinical Trials
Description: A system to simulate clinical trials with time to event endpoints. Event simulation is based on Cox models allowing for covariates in addition to the treatment or group factor. Specific drop-out rates (separate from administrative censoring) can be controlled in the simulation. Other features include stratified randomization, non-proportional hazards, different accrual patterns, and event projection (timing to reach the target event) based on interim data.
Author: Bo Zhang [cre, aut], Yi Zhong [aut, ctb], Ginny Peng [aut, ctb], Bin Yao [aut, ctb]
Maintainer: Bo Zhang <bzhang@pumabiotechnology.com>

Diff between TwoArmSurvSim versions 0.1 dated 2020-12-16 and 0.2 dated 2021-02-26

 DESCRIPTION                   |    8 -
 MD5                           |    8 -
 NAMESPACE                     |    3 
 R/utility_functions.R         |  305 ++++++++++++++++++++++++++++++++++++++++++
 man/censor_surv.Rd            |only
 man/run_simulation_simsurv.Rd |only
 6 files changed, 317 insertions(+), 7 deletions(-)

More information about TwoArmSurvSim at CRAN
Permanent link

New package sgat with initial version 0.9
Package: sgat
Title: Extract Information from Google's "Popular Times"
Version: 0.9
Authors@R: person(given = "Matias", family = "Poullain", role = c("aut", "cre"), email = "matias.poullain@gmail.com", comment = c(ORCID = "0000-0003-4190-659X"))
Description: Once you've identified a real life place, such as a shop, a restaurant, a bar, etc. use this package to simulate a Google search and retrieve its "Popular Times" and geographic location information and save them in Comma-Separated Values files. This package also downloads a list of restaurants and bars of Ushuaia city, Argentina.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Suggests: testthat (>= 3.0.0), knitr, rmarkdown
Config/testthat/edition: 3
Imports: RSelenium, RCurl, qdapRegex, dplyr, stringr, data.table, plyr, utils
URL: https://github.com/matiaspoullain/sgat
BugReports: https://github.com/matiaspoullain/sgat/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-02-24 13:29:47 UTC; Rzne_2
Author: Matias Poullain [aut, cre] (<https://orcid.org/0000-0003-4190-659X>)
Maintainer: Matias Poullain <matias.poullain@gmail.com>
Repository: CRAN
Date/Publication: 2021-02-26 09:00:02 UTC

More information about sgat at CRAN
Permanent link

Package ComplexUpset updated to version 1.1.0 with previous version 1.0.3 dated 2021-01-10

Title: Create Complex UpSet Plots Using 'ggplot2' Components
Description: UpSet plots are an improvement over Venn Diagram for set overlap visualizations. Striving to bring the best of the 'UpSetR' and 'ggplot2', this package offers a way to create complex overlap visualisations, using simple and familiar tools, i.e. geoms of 'ggplot2'. For introduction to UpSet concept, see Lex et al. (2014) <doi:10.1109/TVCG.2014.2346248>.
Author: Michał Krassowski [aut, cre] (<https://orcid.org/0000-0002-9638-7785>)
Maintainer: Michał Krassowski <krassowski.michal+r@gmail.com>

Diff between ComplexUpset versions 1.0.3 dated 2021-01-10 and 1.1.0 dated 2021-02-26

 ComplexUpset-1.0.3/ComplexUpset/vignettes/Examples_R_files/Examples_R_153_0.png |only
 ComplexUpset-1.0.3/ComplexUpset/vignettes/Examples_R_files/Examples_R_156_0.png |only
 ComplexUpset-1.0.3/ComplexUpset/vignettes/Examples_R_files/Examples_R_160_0.png |only
 ComplexUpset-1.0.3/ComplexUpset/vignettes/Examples_R_files/Examples_R_165_1.png |only
 ComplexUpset-1.0.3/ComplexUpset/vignettes/Examples_R_files/Examples_R_172_0.png |only
 ComplexUpset-1.0.3/ComplexUpset/vignettes/Examples_R_files/Examples_R_174_1.png |only
 ComplexUpset-1.0.3/ComplexUpset/vignettes/Examples_R_files/Examples_R_181_0.png |only
 ComplexUpset-1.0.3/ComplexUpset/vignettes/Examples_R_files/Examples_R_188_0.png |only
 ComplexUpset-1.1.0/ComplexUpset/DESCRIPTION                                     |    6 
 ComplexUpset-1.1.0/ComplexUpset/MD5                                             |   47 +++----
 ComplexUpset-1.1.0/ComplexUpset/R/data.R                                        |   64 +++++++---
 ComplexUpset-1.1.0/ComplexUpset/R/upset.R                                       |    7 -
 ComplexUpset-1.1.0/ComplexUpset/inst/doc/Examples_R.Rmd                         |   51 +++++--
 ComplexUpset-1.1.0/ComplexUpset/inst/doc/Examples_R.html                        |   25 +++
 ComplexUpset-1.1.0/ComplexUpset/man/upset.Rd                                    |    2 
 ComplexUpset-1.1.0/ComplexUpset/man/upset_data.Rd                               |    4 
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R.Rmd                        |   51 +++++--
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_130_0.png |binary
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_152_0.png |only
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_155_0.png |only
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_158_0.png |only
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_162_0.png |only
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_167_1.png |binary
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_169_1.png |binary
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_171_1.png |only
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_174_0.png |only
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_176_1.png |binary
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_178_1.png |only
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_183_0.png |binary
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_185_0.png |binary
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_187_0.png |only
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_190_0.png |only
 ComplexUpset-1.1.0/ComplexUpset/vignettes/Examples_R_files/Examples_R_40_0.png  |binary
 33 files changed, 185 insertions(+), 72 deletions(-)

More information about ComplexUpset at CRAN
Permanent link

New package ccrtm with initial version 0.1.6
Package: ccrtm
Type: Package
Title: Coupled Chain Radiative Transfer Models
Version: 0.1.6
Date: 2021-02-22
Authors@R: c(person(given="Marco D.",family="Visser", role = c("aut", "cre"), email = "marco.d.visser@gmail.com"))
Description: A set of radiative transfer models to quantitatively describe the absorption, reflectance and transmission of solar energy in vegetation, and model remotely sensed spectral signatures of vegetation at distinct spatial scales (leaf,canopy and stand). The main principle behind ccrtm is that many radiative transfer models can form a coupled chain, basically models that feed into each other in a linked chain (from leaf, to canopy, to stand, to atmosphere). It allows the simulation of spectral datasets in the solar spectrum (400-2500nm) using leaf models as PROSPECT5, 5b, and D which can be coupled with canopy models as 'FLIM', 'SAIL' and 'SAIL2'. Currently, only a simple atmospheric model ('skyl') is implemented. Jacquemoud et al 2008 provide the most comprehensive overview of these models <doi:10.1016/j.rse.2008.01.026>.
License: GPL (>= 2)
URL: https://github.com/MarcoDVisser/ccrtm
BugReports: https://github.com/MarcoDVisser/ccrtm/issues
Imports: graphics, grDevices, stats, testthat, Rcpp (>= 1.0.3), expint, pracma
LinkingTo: Rcpp
Repository: CRAN
RoxygenNote: 7.0.2
NeedsCompilation: yes
Packaged: 2021-02-24 13:01:58 UTC; mvisser
Author: Marco D. Visser [aut, cre]
Maintainer: Marco D. Visser <marco.d.visser@gmail.com>
Depends: R (>= 3.5.0)
Date/Publication: 2021-02-26 08:50:02 UTC

More information about ccrtm at CRAN
Permanent link

Package wrMisc updated to version 1.5.3 with previous version 1.5.2 dated 2021-02-09

Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions. Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc. Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM) for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates). Other functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc. Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of large data-sets by combining very close values. Many times large experimental datasets need some additional filtering, adequate functions are provided. Batch reading (or writing) of sets of files and combining data to arrays is supported, too. Convenient data normalization is supported in various different modes, parameter estimation via permutations or boot-strap as well as flexible testing of multiple pair-wise combinations using the framework of 'limma' is provided, too.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>

Diff between wrMisc versions 1.5.2 dated 2021-02-09 and 1.5.3 dated 2021-02-26

 DESCRIPTION                   |    6 ++--
 MD5                           |    8 +++---
 R/matchSampToPairw.R          |   52 +++++++++++++++++++++++++++++-------------
 inst/doc/wrMiscVignette1.html |   28 ++++++++++------------
 man/matchSampToPairw.Rd       |   21 +++++++++++-----
 5 files changed, 70 insertions(+), 45 deletions(-)

More information about wrMisc at CRAN
Permanent link

Package tfruns updated to version 1.5.0 with previous version 1.4 dated 2018-08-25

Title: Training Run Tools for 'TensorFlow'
Description: Create and manage unique directories for each 'TensorFlow' training run. Provides a unique, time stamped directory for each run along with functions to retrieve the directory of the latest run or latest several runs.
Author: Daniel Falbel [ctb, cre], JJ Allaire [aut], RStudio [cph, fnd], Mike Bostock [cph] (D3 library - https://d3js.org/), Masayuki Tanaka [cph] (C3 library - http://c3js.org/), jQuery Foundation [cph] (jQuery library), jQuery contributors [cph] (jQuery library; authors: inst/views/components/jquery-AUTHORS.txt), Shaun Bowe [cph] (jQuery visibilityChanged plugin), Materialize [cph] (Materizlize library - https://materializecss.com/), Yuxi You [cph] (Vue.js library - https://vuejs.org/), Kevin Decker [cph] (jsdiff library - https://github.com/kpdecker/jsdiff/), Rodrigo Fernandes [cph] (diff2html library - https://diff2html.xyz/), Ivan Sagalaev [cph] (highlight.js library - https://highlightjs.org/), Yauheni Pakala [cph] (highlightjs-line-numbers library)
Maintainer: Daniel Falbel <daniel@rstudio.com>

Diff between tfruns versions 1.4 dated 2018-08-25 and 1.5.0 dated 2021-02-26

 tfruns-1.4/tfruns/tests/testthat/utils.R             |only
 tfruns-1.5.0/tfruns/DESCRIPTION                      |   18 +
 tfruns-1.5.0/tfruns/MD5                              |   68 +++---
 tfruns-1.5.0/tfruns/NEWS.md                          |only
 tfruns-1.5.0/tfruns/R/run_metadata.R                 |    4 
 tfruns-1.5.0/tfruns/R/training_run.R                 |  129 ++++++++-----
 tfruns-1.5.0/tfruns/R/utils.R                        |   15 +
 tfruns-1.5.0/tfruns/README.md                        |    8 
 tfruns-1.5.0/tfruns/build/vignette.rds               |binary
 tfruns-1.5.0/tfruns/inst/doc/managing.R              |   14 -
 tfruns-1.5.0/tfruns/inst/doc/managing.html           |  122 +++++++++---
 tfruns-1.5.0/tfruns/inst/doc/overview.R              |   24 +-
 tfruns-1.5.0/tfruns/inst/doc/overview.Rmd            |    4 
 tfruns-1.5.0/tfruns/inst/doc/overview.html           |  140 ++++++++++----
 tfruns-1.5.0/tfruns/inst/doc/tuning.R                |   16 -
 tfruns-1.5.0/tfruns/inst/doc/tuning.Rmd              |    4 
 tfruns-1.5.0/tfruns/inst/doc/tuning.html             |  186 ++++++++++++-------
 tfruns-1.5.0/tfruns/man/clean_runs.Rd                |   17 +
 tfruns-1.5.0/tfruns/man/compare_runs.Rd              |    3 
 tfruns-1.5.0/tfruns/man/copy_run.Rd                  |    4 
 tfruns-1.5.0/tfruns/man/flags.Rd                     |   10 -
 tfruns-1.5.0/tfruns/man/ls_runs.Rd                   |    9 
 tfruns-1.5.0/tfruns/man/reexports.Rd                 |    2 
 tfruns-1.5.0/tfruns/man/training_run.Rd              |   20 +-
 tfruns-1.5.0/tfruns/man/tuning_run.Rd                |   57 ++++-
 tfruns-1.5.0/tfruns/man/unique_run_dir.Rd            |    6 
 tfruns-1.5.0/tfruns/man/write_run_metadata.Rd        |    6 
 tfruns-1.5.0/tfruns/tests/testthat/flags-precision.R |only
 tfruns-1.5.0/tfruns/tests/testthat/helper.R          |only
 tfruns-1.5.0/tfruns/tests/testthat/test-copy.R       |   58 ++++-
 tfruns-1.5.0/tfruns/tests/testthat/test-flags.R      |   70 ++++---
 tfruns-1.5.0/tfruns/tests/testthat/test-run-data.R   |   28 ++
 tfruns-1.5.0/tfruns/tests/testthat/test-runs.R       |   52 +++--
 tfruns-1.5.0/tfruns/tests/testthat/test-tuning.R     |   91 ++++++++-
 tfruns-1.5.0/tfruns/tests/testthat/train.R           |    2 
 tfruns-1.5.0/tfruns/vignettes/overview.Rmd           |    4 
 tfruns-1.5.0/tfruns/vignettes/tuning.Rmd             |    4 
 37 files changed, 834 insertions(+), 361 deletions(-)

More information about tfruns at CRAN
Permanent link

Package paws.common updated to version 0.3.9 with previous version 0.3.8 dated 2021-01-25

Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services <https://aws.amazon.com>. The functions handle building, signing, and sending requests, and receiving responses. They are designed to help build higher-level interfaces to individual services, such as Simple Storage Service (S3).
Author: David Kretch [aut, cre], Adam Banker [aut], Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>

Diff between paws.common versions 0.3.8 dated 2021-01-25 and 0.3.9 dated 2021-02-26

 DESCRIPTION                                |   26 ++--
 MD5                                        |   16 +-
 NEWS.md                                    |   10 +
 R/config.R                                 |  123 +++++++++-----------
 R/credential_providers.R                   |  177 +++++++++++++++++++----------
 R/credentials.R                            |   17 --
 man/set_config.Rd                          |  102 +++++++++-------
 tests/testthat/test_credential_providers.R |    8 -
 tests/testthat/test_credentials.R          |  112 +++++++++++++++++-
 9 files changed, 382 insertions(+), 209 deletions(-)

More information about paws.common at CRAN
Permanent link

Package dbscan updated to version 1.1-6 with previous version 1.1-5 dated 2019-10-23

Title: Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms
Description: A fast reimplementation of several density-based algorithms of the DBSCAN family for spatial data. Includes the clustering algorithms DBSCAN (density-based spatial clustering of applications with noise) and HDBSCAN (hierarchical DBSCAN), the ordering algorithm OPTICS (ordering points to identify the clustering structure), and the outlier detection algorithm LOF (local outlier factor). The implementations use the kd-tree data structure (from library ANN) for faster k-nearest neighbor search. An R interface to fast kNN and fixed-radius NN search is also provided. Hahsler, Piekenbrock and Doran (2019) <doi:10.18637/jss.v091.i01>.
Author: Michael Hahsler [aut, cre, cph], Matthew Piekenbrock [aut, cph], Sunil Arya [ctb, cph], David Mount [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>

Diff between dbscan versions 1.1-5 dated 2019-10-23 and 1.1-6 dated 2021-02-26

 DESCRIPTION                   |   29 -
 MD5                           |   97 ++---
 NAMESPACE                     |    1 
 NEWS.md                       |   14 
 R/GLOSH.R                     |   22 -
 R/LOF.R                       |   13 
 R/NN.R                        |    6 
 R/RcppExports.R               |    4 
 R/dbscan.R                    |    8 
 R/extractFOSC.R               |   45 +-
 R/frNN.R                      |    6 
 R/hdbscan.R                   |   28 -
 R/hullplot.R                  |    8 
 R/jpclust.R                   |    2 
 R/kNN.R                       |   12 
 R/optics.R                    |    6 
 R/predict.R                   |   11 
 R/sNN.R                       |    2 
 R/zzz.R                       |only
 README.md                     |   12 
 build/partial.rdb             |binary
 build/vignette.rds            |binary
 inst/CITATION                 |    2 
 inst/doc/dbscan.R             |    1 
 inst/doc/dbscan.pdf           |binary
 inst/doc/hdbscan.R            |   36 -
 inst/doc/hdbscan.html         |  774 ++++++++++++++++++++++++------------------
 man/dbscan.Rd                 |    4 
 man/fosc.Rd                   |    6 
 man/glosh.Rd                  |    2 
 man/hdbscan.Rd                |   13 
 man/jpclust.Rd                |    2 
 man/kNN.Rd                    |    4 
 man/lof.Rd                    |   21 -
 man/optics.Rd                 |    4 
 man/sNN.Rd                    |   17 
 man/sNNclust.Rd               |    2 
 src/R_cleanup.cpp             |only
 src/R_dbscan.cpp              |    8 
 src/R_density.cpp             |    8 
 src/R_frNN.cpp                |    5 
 src/R_kNN.cpp                 |   17 
 src/R_optics.cpp              |    8 
 src/RcppExports.cpp           |   10 
 src/buildHDBSCAN.cpp          |  532 ++++++++++++++--------------
 src/kd_tree.cpp               |   14 
 src/mrd.cpp                   |    2 
 tests/testthat/test-fosc.R    |   31 -
 tests/testthat/test-hdbscan.R |   11 
 tests/testthat/test-kNN.R     |   22 -
 tests/testthat/test-predict.R |only
 51 files changed, 1029 insertions(+), 853 deletions(-)

More information about dbscan at CRAN
Permanent link

Package pact (with last version 0.5.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-04-15 0.5.0

Permanent link
Package gtsummary (with last version 1.3.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-01-08 1.3.6
2020-09-29 1.3.5
2020-08-27 1.3.4
2020-08-11 1.3.3
2020-06-14 1.3.2
2020-06-02 1.3.1
2020-04-17 1.3.0
2020-02-13 1.2.6
2020-02-11 1.2.5
2019-12-16 1.2.4
2019-11-12 1.2.3
2019-11-10 1.2.2
2019-08-20 1.2.1
2019-08-19 1.2.0
2019-05-10 0.1.0

Permanent link

Thu, 25 Feb 2021

Package yamlet updated to version 0.7.0 with previous version 0.6.10 dated 2021-02-20

Title: Versatile Curation of Table Metadata
Description: A YAML-based mechanism for working with table metadata. It supports compact syntax for creating, modifying, viewing, exporting, importing, displaying, and plotting metadata coded as column attributes. The 'yamlet' dialect is valid 'YAML' with defaults and conventions chosen to improve readability. See ?yamlet, ?decorate.data.frame and ?modify.default. See ?read_yamlet ?write_yamlet, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>

Diff between yamlet versions 0.6.10 dated 2021-02-20 and 0.7.0 dated 2021-02-25

 yamlet-0.6.10/yamlet/tests/testthat/Rplots.pdf        |only
 yamlet-0.7.0/yamlet/DESCRIPTION                       |    6 +++---
 yamlet-0.7.0/yamlet/MD5                               |   17 ++++++++---------
 yamlet-0.7.0/yamlet/R/mimic.R                         |    8 +++++---
 yamlet-0.7.0/yamlet/R/parseable.R                     |    4 ++--
 yamlet-0.7.0/yamlet/inst/doc/yamlet-introduction.html |    4 ++--
 yamlet-0.7.0/yamlet/man/is_parseable.default.Rd       |    4 ++--
 yamlet-0.7.0/yamlet/man/mimic.classified.Rd           |    3 ++-
 yamlet-0.7.0/yamlet/man/mimic.default.Rd              |    3 ++-
 yamlet-0.7.0/yamlet/tests/testthat/test-yamlet.R      |    5 +++--
 10 files changed, 29 insertions(+), 25 deletions(-)

More information about yamlet at CRAN
Permanent link

Package GWI updated to version 1.0.2 with previous version 1.0.1 dated 2021-01-27

Title: Count and Continuous Generalized Variability Indexes
Description: Firstly, both functions of the univariate Poisson dispersion index (DI) for count data and the univariate exponential variation index (VI) for nonnegative continuous data are performed. Next, other functions of univariate indexes such the binomial dispersion index (DIb), the negative binomial dispersion index (DInb) and the inverse Gaussian variation index (VIiG) are given. Finally, we are computed some multivariate versions of these functions such that the generalized dispersion index (GDI) with its marginal one (MDI) and the generalized variation index (GVI) with its marginal one (MVI) too.
Author: Aboubacar Y. Touré and Célestin C. Kokonendji
Maintainer: Aboubacar Y. Touré <aboubacaryacoubatoure.ussgb@gmail.com>

Diff between GWI versions 1.0.1 dated 2021-01-27 and 1.0.2 dated 2021-02-25

 DESCRIPTION        |   10 +++++-----
 MD5                |   28 +++++++++++++++++-----------
 NAMESPACE          |    4 ++++
 R/di.R             |    2 +-
 R/diB.R            |only
 R/diNB.R           |only
 R/gmdi.R           |    5 +++--
 R/gmvi.R           |    6 ++++--
 R/vi.R             |    3 ++-
 R/viIG.R           |only
 man/GWI-package.Rd |   21 +++++++++++++++++----
 man/di.fun.Rd      |    2 +-
 man/dib.fun.Rd     |only
 man/dinb.fun.Rd    |only
 man/gmdi.fun.Rd    |    4 ++--
 man/gmvi.fun.Rd    |    4 ++--
 man/vi.fun.Rd      |    2 +-
 man/viiG.fun.Rd    |only
 18 files changed, 59 insertions(+), 32 deletions(-)

More information about GWI at CRAN
Permanent link

Package demoKde updated to version 1.0.0 with previous version 0.9-4 dated 2017-02-01

Title: Kernel Density Estimation for Demonstration Purposes
Description: Demonstration code showing how (univariate) kernel density estimates are computed, at least conceptually, and allowing users to experiment with different kernels, should they so wish. The method used follows directly the definition, but gains efficiency by replacing the observations by frequencies in a very fine grid covering the sample range. A canonical reference is B. W. Silverman, (1998) <doi: 10.1201/9781315140919>. NOTE: the density function in the stats package uses a more sophisticated method based on the fast Fourier transform and that function should be used if computational efficiency is a prime consideration.
Author: Bill Venables
Maintainer: Bill Venables <Bill.Venables@gmail.com>

Diff between demoKde versions 0.9-4 dated 2017-02-01 and 1.0.0 dated 2021-02-25

 DESCRIPTION            |   19 +++++++++++++------
 MD5                    |   11 ++++++-----
 R/demoKde.R            |   38 +++++++++++++++++++++-----------------
 build                  |only
 man/demoKde-package.Rd |   14 ++++++++++----
 man/kde.Rd             |   10 +++++++---
 man/kernelBiweight.Rd  |    4 ++--
 7 files changed, 59 insertions(+), 37 deletions(-)

More information about demoKde at CRAN
Permanent link

Package mitre updated to version 0.5.0 with previous version 0.1.1 dated 2020-11-26

Title: Cybersecurity MITRE Standards Data and Digraphs
Description: Extract, transform and load MITRE standards. This package gives you an approach to cybersecurity data sets. All data sets are build on runtime downloading raw data from MITRE public services. MITRE <https://www.mitre.org/> is a government-funded research organization based in Bedford and McLean. Current version includes most used standards as data frames. It also provide a list of nodes and edges with all relationships.
Author: Humbert Costas [aut, cre]
Maintainer: Humbert Costas <humbert.costas@gmail.com>

Diff between mitre versions 0.1.1 dated 2020-11-26 and 0.5.0 dated 2021-02-25

 mitre-0.1.1/mitre/inst/doc/Introduction.html          |only
 mitre-0.5.0/mitre/DESCRIPTION                         |   17 -
 mitre-0.5.0/mitre/MD5                                 |   87 +++++++--
 mitre-0.5.0/mitre/NAMESPACE                           |   14 -
 mitre-0.5.0/mitre/NEWS.md                             |   39 ++++
 mitre-0.5.0/mitre/R/attck.R                           |only
 mitre-0.5.0/mitre/R/capec.R                           |only
 mitre-0.5.0/mitre/R/car.R                             |only
 mitre-0.5.0/mitre/R/cpe.R                             |only
 mitre-0.5.0/mitre/R/cti.R                             |only
 mitre-0.5.0/mitre/R/cve.R                             |only
 mitre-0.5.0/mitre/R/cwe.R                             |only
 mitre-0.5.0/mitre/R/mitre.R                           |only
 mitre-0.5.0/mitre/R/network.R                         |only
 mitre-0.5.0/mitre/R/shield.R                          |  170 ++++++++---------
 mitre-0.5.0/mitre/README.md                           |  172 ++++++++++--------
 mitre-0.5.0/mitre/build/vignette.rds                  |binary
 mitre-0.5.0/mitre/inst/doc/Introduction.R             |   30 +--
 mitre-0.5.0/mitre/inst/doc/Introduction.Rmd           |   34 ++-
 mitre-0.5.0/mitre/inst/doc/Introduction.pdf           |only
 mitre-0.5.0/mitre/inst/doc/Mitre.R                    |only
 mitre-0.5.0/mitre/inst/doc/Mitre.Rmd                  |only
 mitre-0.5.0/mitre/inst/doc/Mitre.html                 |only
 mitre-0.5.0/mitre/inst/scripts                        |only
 mitre-0.5.0/mitre/man/MapCommonproperties.Rd          |only
 mitre-0.5.0/mitre/man/MapGroups.Rd                    |only
 mitre-0.5.0/mitre/man/MapMitigation.Rd                |only
 mitre-0.5.0/mitre/man/MapRelations.Rd                 |only
 mitre-0.5.0/mitre/man/MapSoftware.Rd                  |only
 mitre-0.5.0/mitre/man/MapTactics.Rd                   |only
 mitre-0.5.0/mitre/man/MapTechniques.Rd                |only
 mitre-0.5.0/mitre/man/buildAttckTactics.Rd            |only
 mitre-0.5.0/mitre/man/createATTCKedges.Rd             |only
 mitre-0.5.0/mitre/man/downloadRawData.Rd              |only
 mitre-0.5.0/mitre/man/getAttckData.Rd                 |only
 mitre-0.5.0/mitre/man/getCAPECData.Rd                 |only
 mitre-0.5.0/mitre/man/getCARData.Rd                   |only
 mitre-0.5.0/mitre/man/getCPEData.Rd                   |only
 mitre-0.5.0/mitre/man/getCVEData.Rd                   |only
 mitre-0.5.0/mitre/man/getCWEData.Rd                   |only
 mitre-0.5.0/mitre/man/getLatestDataSet.Rd             |only
 mitre-0.5.0/mitre/man/getNodeNeighbors.Rd             |only
 mitre-0.5.0/mitre/man/getShieldData.Rd                |only
 mitre-0.5.0/mitre/man/getShieldNetwork.Rd             |   15 -
 mitre-0.5.0/mitre/man/getShieldNodes.Rd               |only
 mitre-0.5.0/mitre/man/getShieldOpportunities.Rd       |   12 -
 mitre-0.5.0/mitre/man/getShieldProcedures.Rd          |   12 -
 mitre-0.5.0/mitre/man/getShieldRelations.Rd           |    6 
 mitre-0.5.0/mitre/man/getShieldTactics.Rd             |   12 -
 mitre-0.5.0/mitre/man/getShieldTactictDetail.Rd       |    6 
 mitre-0.5.0/mitre/man/getShieldTechniques.Rd          |   12 -
 mitre-0.5.0/mitre/man/getShieldTechniquesDetail.Rd    |    6 
 mitre-0.5.0/mitre/man/getShieldUseCases.Rd            |   12 -
 mitre-0.5.0/mitre/man/parseAttck.Groups.Rd            |only
 mitre-0.5.0/mitre/man/parseAttck.Mitigation.Rd        |only
 mitre-0.5.0/mitre/man/parseAttck.Relationships.Rd     |only
 mitre-0.5.0/mitre/man/parseAttck.Software.Rd          |only
 mitre-0.5.0/mitre/man/parseAttck.Tactics.Rd           |only
 mitre-0.5.0/mitre/man/parseAttck.Techniques.Rd        |only
 mitre-0.5.0/mitre/man/parseAttckmodel.group.Rd        |only
 mitre-0.5.0/mitre/man/parseAttckmodel.miti.Rd         |only
 mitre-0.5.0/mitre/man/parseAttckmodel.rels.Rd         |only
 mitre-0.5.0/mitre/man/parseAttckmodel.soft.Rd         |only
 mitre-0.5.0/mitre/man/parseAttckmodel.tact.Rd         |only
 mitre-0.5.0/mitre/man/parseAttckmodel.tech.Rd         |only
 mitre-0.5.0/mitre/man/parseRawData.Rd                 |only
 mitre-0.5.0/mitre/vignettes/Introduction.Rmd          |   34 ++-
 mitre-0.5.0/mitre/vignettes/Introduction.html         |only
 mitre-0.5.0/mitre/vignettes/Mitre.Rmd                 |only
 mitre-0.5.0/mitre/vignettes/images/readme_example.png |only
 70 files changed, 393 insertions(+), 297 deletions(-)

More information about mitre at CRAN
Permanent link

Package hydraulics updated to version 0.2.4 with previous version 0.2.3 dated 2020-12-13

Title: Basic Pipe and Open Channel Hydraulics
Description: Functions for basic hydraulic calculations related to water flow in circular pipes both flowing full (under pressure), and partially full (gravity flow), and trapezoidal open channels. For pressure flow this includes friction loss calculations by solving the Darcy-Weisbach equation for head loss, flow or diameter, and plotting a Moody diagram. The Darcy-Weisbach friction factor is calculated using the Colebrook (or Colebrook-White equation), the basis of the Moody diagram, the original citation being Colebrook (1939) <doi:10.1680/ijoti.1939.13150>. For gravity flow, the Manning equation is used, again solving for missing parameters. The derivation of and solutions using the Darcy-Weisbach equation and the Manning equation are outlined in many fluid mechanics texts such as Finnemore and Franzini (2002, ISBN:978-0072432022). For the Manning equation solutions, this package uses modifications of original code from the 'iemisc' package by Irucka Embry.
Author: Ed Maurer [aut, cre], Irucka Embry [aut, ctb] (iemisc code)
Maintainer: Ed Maurer <emaurer@scu.edu>

Diff between hydraulics versions 0.2.3 dated 2020-12-13 and 0.2.4 dated 2021-02-25

 DESCRIPTION                                 |    6 +++---
 MD5                                         |   10 +++++-----
 NEWS.md                                     |    4 ++++
 R/spec_energy_trap.R                        |   19 ++++++++++++-------
 inst/doc/hydraulics_vignette.html           |    8 ++++----
 man/figures/README-spec-energy-plot-1-1.png |binary
 6 files changed, 28 insertions(+), 19 deletions(-)

More information about hydraulics at CRAN
Permanent link

Package psychReport updated to version 3.0.0 with previous version 2.0.0 dated 2020-12-17

Title: Reproducible Reports in Psychology
Description: Helper functions for producing reports in Psychology (Reproducible Research). Provides required formatted strings (APA style) for use in 'Knitr'/'Latex' integration within *.Rnw files.
Author: Ian G Mackenzie [cre, aut], Carolin Dudschig [aut]
Maintainer: Ian G Mackenzie <ian.mackenzie@uni-tuebingen.de>

Diff between psychReport versions 2.0.0 dated 2020-12-17 and 3.0.0 dated 2021-02-25

 DESCRIPTION                                   |   15 -
 LICENSE                                       |    2 
 MD5                                           |   97 ++++-----
 NAMESPACE                                     |    1 
 R/anova.R                                     |  120 ++++++-----
 R/globals.R                                   |only
 R/psychReportData.R                           |  270 ++++++++++++++++++++------
 R/ttest.R                                     |   16 -
 R/utils.R                                     |   40 ++-
 man/addDataDF.Rd                              |   62 +++--
 man/aovDispMeans.Rd                           |    4 
 man/aovDispTable.Rd                           |    4 
 man/aovEffectSize.Rd                          |   12 -
 man/aovJackknifeAdjustment.Rd                 |    8 
 man/aovRoundDigits.Rd                         |    8 
 man/aovSphericityAdjustment.Rd                |    6 
 man/aovTable.Rd                               |    8 
 man/aovTidyTable.Rd                           |    4 
 man/ciStrT.Rd                                 |    4 
 man/createDF.Rd                               |    7 
 man/effectsizeValueString.Rd                  |    8 
 man/errDist.Rd                                |    1 
 man/fValueString.Rd                           |    8 
 man/meanStrAov.Rd                             |    8 
 man/meanStrT.Rd                               |    4 
 man/normData.Rd                               |only
 man/printAovMeans.Rd                          |    4 
 man/printTable.Rd                             |   17 -
 man/psychReport-package.Rd                    |    9 
 man/rtDist.Rd                                 |    3 
 man/sphericityValueString.Rd                  |    6 
 man/statStrAov.Rd                             |    8 
 man/statStrT.Rd                               |    4 
 man/summaryMSDSE.Rd                           |only
 man/tValueString.Rd                           |    4 
 tests/testthat/test-addDataDF.R               |    8 
 tests/testthat/test-aovDispMeans.R            |    6 
 tests/testthat/test-aovDispTable.R            |    6 
 tests/testthat/test-aovEffectSize.R           |    4 
 tests/testthat/test-aovJackknifeAdjustment.R  |    4 
 tests/testthat/test-aovRoundDigits.R          |    6 
 tests/testthat/test-aovSphericityAdjustment.R |    6 
 tests/testthat/test-aovTable.R                |    6 
 tests/testthat/test-aovTidyTable.R            |    6 
 tests/testthat/test-effectsizeValueString.R   |    4 
 tests/testthat/test-fValueString.R            |    8 
 tests/testthat/test-meanStrAov.R              |    4 
 tests/testthat/test-printAovMeans.R           |   11 -
 tests/testthat/test-printTable.R              |    5 
 tests/testthat/test-sphericityValueString.R   |    6 
 tests/testthat/test-statStrAov.R              |    8 
 51 files changed, 538 insertions(+), 332 deletions(-)

More information about psychReport at CRAN
Permanent link

Package magclass updated to version 5.24.7 with previous version 5.15.6 dated 2020-12-14

Title: Data Class and Tools for Handling Spatial-Temporal Data
Description: Data class for increased interoperability working with spatial- temporal data together with corresponding functions and methods (conversions, basic calculations and basic data manipulation). The class distinguishes between spatial, temporal and other dimensions to facilitate the development and interoperability of tools build for it. Additional features are name-based addressing of data and internal consistency checks (e.g. checking for the right data order in calculations).
Author: Jan Philipp Dietrich [aut, cre], Benjamin Leon Bodirsky [aut], Markus Bonsch [aut], Florian Humpenoeder [aut], Stephen Bi [aut], Kristine Karstens [aut], Debbora Leip [aut], Lavinia Baumstark [ctb], Christoph Bertram [ctb], Anastasis Giannousakis [ctb], David Klein [ctb], Ina Neher [ctb], Michaja Pehl [ctb], Anselm Schultes [ctb], Miodrag Stevanovic [ctb], Xiaoxi Wang [ctb], Felicitas Beier [ctb]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>

Diff between magclass versions 5.15.6 dated 2020-12-14 and 5.24.7 dated 2021-02-25

 magclass-5.15.6/magclass/R/coord.R                             |only
 magclass-5.15.6/magclass/man/coord.Rd                          |only
 magclass-5.15.6/magclass/tests/testthat/test-travisCI.R        |only
 magclass-5.24.7/magclass/DESCRIPTION                           |   20 
 magclass-5.24.7/magclass/MD5                                   |  210 +-
 magclass-5.24.7/magclass/NAMESPACE                             |   13 
 magclass-5.24.7/magclass/R/add_columns.R                       |    4 
 magclass-5.24.7/magclass/R/add_dimension.R                     |    3 
 magclass-5.24.7/magclass/R/as.RasterBrick.R                    |only
 magclass-5.24.7/magclass/R/as.data.frame.R                     |    6 
 magclass-5.24.7/magclass/R/as.magpie.R                         |   52 
 magclass-5.24.7/magclass/R/calibrate_it.R                      |   16 
 magclass-5.24.7/magclass/R/clean_magpie.R                      |    4 
 magclass-5.24.7/magclass/R/collapseDim.R                       |only
 magclass-5.24.7/magclass/R/collapseNames.R                     |    5 
 magclass-5.24.7/magclass/R/complete_magpie.R                   |    4 
 magclass-5.24.7/magclass/R/convergence.R                       |    4 
 magclass-5.24.7/magclass/R/dimCode.R                           |    6 
 magclass-5.24.7/magclass/R/dimExists.R                         |only
 magclass-5.24.7/magclass/R/dimOrder.R                          |    4 
 magclass-5.24.7/magclass/R/dimReduce.R                         |    2 
 magclass-5.24.7/magclass/R/getCoords.R                         |only
 magclass-5.24.7/magclass/R/getDim.R                            |    8 
 magclass-5.24.7/magclass/R/getItems.R                          |  112 +
 magclass-5.24.7/magclass/R/getMetadata.R                       |   32 
 magclass-5.24.7/magclass/R/hasCoords.R                         |only
 magclass-5.24.7/magclass/R/hasSets.R                           |only
 magclass-5.24.7/magclass/R/head.magpie.R                       |    6 
 magclass-5.24.7/magclass/R/install_magpie_units.R              |   72 
 magclass-5.24.7/magclass/R/lin.convergence.R                   |    4 
 magclass-5.24.7/magclass/R/magpie-class.R                      |  233 +-
 magclass-5.24.7/magclass/R/magpieResolution.R                  |    5 
 magclass-5.24.7/magclass/R/magpie_expand.R                     |  180 --
 magclass-5.24.7/magclass/R/magpie_expand_dim.R                 |    6 
 magclass-5.24.7/magclass/R/magpiesort.R                        |    4 
 magclass-5.24.7/magclass/R/magpply.R                           |   11 
 magclass-5.24.7/magclass/R/maxample.R                          |only
 magclass-5.24.7/magclass/R/mbind.R                             |    6 
 magclass-5.24.7/magclass/R/mcalc.R                             |   10 
 magclass-5.24.7/magclass/R/mselect.R                           |    5 
 magclass-5.24.7/magclass/R/new.magpie.R                        |   30 
 magclass-5.24.7/magclass/R/place_x_in_y.R                      |    6 
 magclass-5.24.7/magclass/R/print.magpie.R                      |    8 
 magclass-5.24.7/magclass/R/read.report.R                       |    2 
 magclass-5.24.7/magclass/R/setItems.R                          |only
 magclass-5.24.7/magclass/R/sizeCheck.R                         |    3 
 magclass-5.24.7/magclass/R/time_interpolate.R                  |    6 
 magclass-5.24.7/magclass/R/where.R                             |    3 
 magclass-5.24.7/magclass/R/withMetadata.R                      |   12 
 magclass-5.24.7/magclass/R/write.report.R                      |    4 
 magclass-5.24.7/magclass/R/write.report2.R                     |    3 
 magclass-5.24.7/magclass/README.md                             |   16 
 magclass-5.24.7/magclass/inst/doc/magclass-concept.html        |   53 
 magclass-5.24.7/magclass/inst/doc/magclass-expansion.R         |   19 
 magclass-5.24.7/magclass/inst/doc/magclass-expansion.Rmd       |   21 
 magclass-5.24.7/magclass/inst/doc/magclass-expansion.html      |  178 --
 magclass-5.24.7/magclass/inst/doc/magclass.R                   |    6 
 magclass-5.24.7/magclass/inst/doc/magclass.Rmd                 |   10 
 magclass-5.24.7/magclass/inst/doc/magclass.html                |  837 ++++------
 magclass-5.24.7/magclass/inst/extdata                          |only
 magclass-5.24.7/magclass/man/add_columns.Rd                    |    4 
 magclass-5.24.7/magclass/man/add_dimension.Rd                  |    3 
 magclass-5.24.7/magclass/man/as.RasterBrick.Rd                 |only
 magclass-5.24.7/magclass/man/as.data.frame-methods.Rd          |    6 
 magclass-5.24.7/magclass/man/calibrate_it.Rd                   |   10 
 magclass-5.24.7/magclass/man/clean_magpie.Rd                   |    4 
 magclass-5.24.7/magclass/man/collapseDim.Rd                    |only
 magclass-5.24.7/magclass/man/collapseNames.Rd                  |    6 
 magclass-5.24.7/magclass/man/complete_magpie.Rd                |    4 
 magclass-5.24.7/magclass/man/convergence.Rd                    |    4 
 magclass-5.24.7/magclass/man/dimCode.Rd                        |    4 
 magclass-5.24.7/magclass/man/dimExists.Rd                      |only
 magclass-5.24.7/magclass/man/dimOrder.Rd                       |    4 
 magclass-5.24.7/magclass/man/dimReduce.Rd                      |    2 
 magclass-5.24.7/magclass/man/getCoords.Rd                      |only
 magclass-5.24.7/magclass/man/getDim.Rd                         |    8 
 magclass-5.24.7/magclass/man/getItems.Rd                       |   28 
 magclass-5.24.7/magclass/man/getMetadata.Rd                    |   32 
 magclass-5.24.7/magclass/man/hasCoords.Rd                      |only
 magclass-5.24.7/magclass/man/hasSets.Rd                        |only
 magclass-5.24.7/magclass/man/head.magpie.Rd                    |    6 
 magclass-5.24.7/magclass/man/lin.convergence.Rd                |    4 
 magclass-5.24.7/magclass/man/magpie-class.Rd                   |   31 
 magclass-5.24.7/magclass/man/magpieResolution.Rd               |    5 
 magclass-5.24.7/magclass/man/magpie_expand.Rd                  |    2 
 magclass-5.24.7/magclass/man/magpiesort.Rd                     |    4 
 magclass-5.24.7/magclass/man/magpply.Rd                        |   11 
 magclass-5.24.7/magclass/man/maxample.Rd                       |only
 magclass-5.24.7/magclass/man/mbind.Rd                          |    6 
 magclass-5.24.7/magclass/man/mcalc.Rd                          |   10 
 magclass-5.24.7/magclass/man/mselect.Rd                        |    5 
 magclass-5.24.7/magclass/man/place_x_in_y.Rd                   |    6 
 magclass-5.24.7/magclass/man/print.magpie.Rd                   |    8 
 magclass-5.24.7/magclass/man/setItems.Rd                       |only
 magclass-5.24.7/magclass/man/sizeCheck.Rd                      |    3 
 magclass-5.24.7/magclass/man/time_interpolate.Rd               |    6 
 magclass-5.24.7/magclass/man/where.Rd                          |    3 
 magclass-5.24.7/magclass/man/withMetadata.Rd                   |   12 
 magclass-5.24.7/magclass/man/write.report.Rd                   |    4 
 magclass-5.24.7/magclass/man/write.report2.Rd                  |    3 
 magclass-5.24.7/magclass/tests/testthat/test-as.magpie.R       |    6 
 magclass-5.24.7/magclass/tests/testthat/test-collapseDim.R     |only
 magclass-5.24.7/magclass/tests/testthat/test-collapseNames.R   |    2 
 magclass-5.24.7/magclass/tests/testthat/test-dimCode.R         |only
 magclass-5.24.7/magclass/tests/testthat/test-dimExists.R       |only
 magclass-5.24.7/magclass/tests/testthat/test-getCoords.R       |only
 magclass-5.24.7/magclass/tests/testthat/test-getDim.R          |   13 
 magclass-5.24.7/magclass/tests/testthat/test-getItems.R        |   40 
 magclass-5.24.7/magclass/tests/testthat/test-lowpass.R         |    4 
 magclass-5.24.7/magclass/tests/testthat/test-magpie.R          |  175 +-
 magclass-5.24.7/magclass/tests/testthat/test-magpie_expand.R   |   14 
 magclass-5.24.7/magclass/tests/testthat/test-metadata.R        |   28 
 magclass-5.24.7/magclass/tests/testthat/test-new.magpie.R      |only
 magclass-5.24.7/magclass/tests/testthat/test-printmagpie.R     |   14 
 magclass-5.24.7/magclass/tests/testthat/test-raster.R          |only
 magclass-5.24.7/magclass/tests/testthat/test-readwritemagpie.R |   10 
 magclass-5.24.7/magclass/vignettes/magclass-expansion.Rmd      |   21 
 magclass-5.24.7/magclass/vignettes/magclass.Rmd                |   10 
 118 files changed, 1514 insertions(+), 1335 deletions(-)

More information about magclass at CRAN
Permanent link

Package tibble updated to version 3.1.0 with previous version 3.0.6 dated 2021-01-29

Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that provides stricter checking and better formatting than the traditional data frame.
Author: Kirill Müller [aut, cre], Hadley Wickham [aut], Romain Francois [ctb], Jennifer Bryan [ctb], RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>

Diff between tibble versions 3.0.6 dated 2021-01-29 and 3.1.0 dated 2021-02-25

 tibble-3.0.6/tibble/R/aaa-pillar.R                            |only
 tibble-3.0.6/tibble/man/glimpse.Rd                            |only
 tibble-3.0.6/tibble/man/tbl_sum.Rd                            |only
 tibble-3.1.0/tibble/DESCRIPTION                               |   24 -
 tibble-3.1.0/tibble/MD5                                       |  152 +++++-----
 tibble-3.1.0/tibble/NAMESPACE                                 |   12 
 tibble-3.1.0/tibble/NEWS.md                                   |   25 +
 tibble-3.1.0/tibble/R/add.R                                   |    2 
 tibble-3.1.0/tibble/R/as_tibble.R                             |   11 
 tibble-3.1.0/tibble/R/class-tbl_df.R                          |    6 
 tibble-3.1.0/tibble/R/enframe.R                               |    2 
 tibble-3.1.0/tibble/R/error.R                                 |   18 -
 tibble-3.1.0/tibble/R/glimpse.R                               |  142 ---------
 tibble-3.1.0/tibble/R/legacy-compat.R                         |    2 
 tibble-3.1.0/tibble/R/lst.R                                   |   10 
 tibble-3.1.0/tibble/R/names.R                                 |   26 -
 tibble-3.1.0/tibble/R/new.R                                   |    2 
 tibble-3.1.0/tibble/R/print.R                                 |   41 +-
 tibble-3.1.0/tibble/R/rownames.R                              |    6 
 tibble-3.1.0/tibble/R/subsetting.R                            |   20 -
 tibble-3.1.0/tibble/R/tbl_sum.R                               |   39 --
 tibble-3.1.0/tibble/R/tibble.R                                |   12 
 tibble-3.1.0/tibble/R/tidy_names.R                            |    2 
 tibble-3.1.0/tibble/R/tribble.R                               |    4 
 tibble-3.1.0/tibble/R/zzz.R                                   |   10 
 tibble-3.1.0/tibble/build/vignette.rds                        |binary
 tibble-3.1.0/tibble/inst/doc/formats.html                     |   18 -
 tibble-3.1.0/tibble/inst/doc/invariants.R                     |    2 
 tibble-3.1.0/tibble/inst/doc/invariants.Rmd                   |    2 
 tibble-3.1.0/tibble/inst/doc/invariants.html                  |   74 ++--
 tibble-3.1.0/tibble/inst/doc/tibble.html                      |   18 -
 tibble-3.1.0/tibble/inst/doc/types.html                       |    6 
 tibble-3.1.0/tibble/man/as_tibble.Rd                          |    6 
 tibble-3.1.0/tibble/man/deprecated.Rd                         |    2 
 tibble-3.1.0/tibble/man/enframe.Rd                            |    2 
 tibble-3.1.0/tibble/man/formatting.Rd                         |   14 
 tibble-3.1.0/tibble/man/frame_matrix.Rd                       |    2 
 tibble-3.1.0/tibble/man/is.tibble.Rd                          |    2 
 tibble-3.1.0/tibble/man/lst.Rd                                |   12 
 tibble-3.1.0/tibble/man/name-repair-superseded.Rd             |    2 
 tibble-3.1.0/tibble/man/new_tibble.Rd                         |    2 
 tibble-3.1.0/tibble/man/reexports.Rd                          |    7 
 tibble-3.1.0/tibble/man/subsetting.Rd                         |    5 
 tibble-3.1.0/tibble/man/tibble-package.Rd                     |    2 
 tibble-3.1.0/tibble/man/tibble.Rd                             |   10 
 tibble-3.1.0/tibble/man/tribble.Rd                            |    2 
 tibble-3.1.0/tibble/man/trunc_mat.Rd                          |only
 tibble-3.1.0/tibble/man/view.Rd                               |    2 
 tibble-3.1.0/tibble/tests/testthat/_snaps/add.md              |    3 
 tibble-3.1.0/tibble/tests/testthat/_snaps/as_tibble.md        |   27 +
 tibble-3.1.0/tibble/tests/testthat/_snaps/class-tbl_df.md     |   14 
 tibble-3.1.0/tibble/tests/testthat/_snaps/invariants.md       |only
 tibble-3.1.0/tibble/tests/testthat/_snaps/msg.md              |   46 ---
 tibble-3.1.0/tibble/tests/testthat/_snaps/names.md            |   20 -
 tibble-3.1.0/tibble/tests/testthat/_snaps/print.md            |    6 
 tibble-3.1.0/tibble/tests/testthat/_snaps/str.md              |   12 
 tibble-3.1.0/tibble/tests/testthat/_snaps/subsetting.md       |   86 -----
 tibble-3.1.0/tibble/tests/testthat/_snaps/tibble.md           |    1 
 tibble-3.1.0/tibble/tests/testthat/_snaps/tidy_names.md       |    1 
 tibble-3.1.0/tibble/tests/testthat/_snaps/utils-msg-format.md |    2 
 tibble-3.1.0/tibble/tests/testthat/helper-expectations.R      |    2 
 tibble-3.1.0/tibble/tests/testthat/helper-zzz.R               |    5 
 tibble-3.1.0/tibble/tests/testthat/test-add.R                 |    2 
 tibble-3.1.0/tibble/tests/testthat/test-as_tibble.R           |   34 +-
 tibble-3.1.0/tibble/tests/testthat/test-class-tbl_df.R        |    1 
 tibble-3.1.0/tibble/tests/testthat/test-error.R               |    7 
 tibble-3.1.0/tibble/tests/testthat/test-invariants.R          |only
 tibble-3.1.0/tibble/tests/testthat/test-msg.R                 |   30 -
 tibble-3.1.0/tibble/tests/testthat/test-names.R               |   25 -
 tibble-3.1.0/tibble/tests/testthat/test-new.R                 |    2 
 tibble-3.1.0/tibble/tests/testthat/test-print.R               |    1 
 tibble-3.1.0/tibble/tests/testthat/test-rownames.R            |   12 
 tibble-3.1.0/tibble/tests/testthat/test-subsetting.R          |   19 +
 tibble-3.1.0/tibble/tests/testthat/test-zzz-data-frame.R      |   22 -
 tibble-3.1.0/tibble/tests/testthat/test-zzz-glimpse.R         |   10 
 tibble-3.1.0/tibble/tests/testthat/test-zzz-msg.R             |   24 -
 tibble-3.1.0/tibble/tests/testthat/test-zzz-name-repair.R     |   16 -
 tibble-3.1.0/tibble/tests/testthat/test-zzz-syntactic-names.R |    4 
 tibble-3.1.0/tibble/tests/testthat/test-zzz-tbl-df.R          |    2 
 tibble-3.1.0/tibble/vignettes/invariants.Rmd                  |    2 
 80 files changed, 488 insertions(+), 710 deletions(-)

More information about tibble at CRAN
Permanent link

Package QRIpkg updated to version 0.2.2 with previous version 0.2.1 dated 2020-10-20

Title: Quantile Regression Index Score
Description: The QRI_func() function performs quantile regression analysis using age and sex as predictors to calculate the Quantile Regression Index (QRI) score for each individual’s regional brain imaging metrics and then averages across the regional scores to generate an average tissue specific score for each subject. The QRI_plot() is used to plot QRI and generate the normative curves for individual measurements.
Author: Peter Kochunov [aut], Si Gao [aut, cre], Meghann Ryan [aut]
Maintainer: Si Gao <sgao@som.umaryland.edu>

Diff between QRIpkg versions 0.2.1 dated 2020-10-20 and 0.2.2 dated 2021-02-25

 DESCRIPTION     |    6 +++---
 MD5             |    6 +++---
 R/QRI_func.R    |   13 ++++++++-----
 man/QRI_func.Rd |   16 +++++++++++++---
 4 files changed, 27 insertions(+), 14 deletions(-)

More information about QRIpkg at CRAN
Permanent link

New package npde with initial version 3.0
Package: npde
Title: Normalised Prediction Distribution Errors for Nonlinear Mixed-Effect Models
Version: 3.0
Date: 2021-02-01
Authors@R: c(person(given = "Emmanuelle", family = "Comets", role = c("aut", "cre"), email = "emmanuelle.comets@inserm.fr", comment = c(ORCID = "0000-0002-9150-9886")), person(given = "Karl", family = "Brendel", role = "ctb"), person(given = "Thi Huyen Tram", family = "Nguyen", role = "ctb"), person(given = "Romain", family = "Leroux", role = "ctb"), person(given = "France", family = "Mentre", role = "ctb"))
Maintainer: Emmanuelle Comets <emmanuelle.comets@inserm.fr>
Description: Provides routines to compute normalised prediction distribution errors, a metric designed to evaluate non-linear mixed effect models such as those used in pharmacokinetics and pharmacodynamics. Documentation about 'npde' is provided by a comprehensive user guide on the github repository (<https://github.com/ecomets/npde30/blob/main/userguide_npde_3.0.pdf>), and references concerning the methods include the papers by Brendel et al. (2006, <doi:10.1007/s11095-006-9067-5>; 2010, <doi:10.1007/s10928-009-9143-7>), Comets et al. (2008, <doi:10.1016/j.cmpb.2007.12.002> ; 2010, <http://journal-sfds.fr/article/view/45>), and Nguyen et al. (2012, <doi:10.1007/s10928-012-9264-2>). See 'citation("npde")' for details.
URL: https://github.com/ecomets/npde30/blob/main/userguide_npde_3.0.pdf
License: GPL (>= 2)
Encoding: UTF-8
LazyLoad: yes
LazyData: yes
Depends: gridExtra, ggplot2, grid
Imports: methods, scales, mclust, testthat, rlang
RoxygenNote: 7.1.1
Collate: 'NpdeSimData.R' 'NpdeData.R' 'aaa_generics.R' 'NpdeData-methods.R' 'NpdeRes.R' 'NpdeRes-methods.R' 'NpdeObject.R' 'NpdeObject-methods.R' 'compute_distribution.R' 'compute_npde.R' 'compute_pd.R' 'compute_ploq.R' 'mainNpde.R' 'npde.R' 'npdeControl.R' 'plotNpde-auxDistPlot.R' 'plotNpde-auxScatter.R' 'plotNpde-auxScatterPlot.R' 'plotNpde-binningPI.R' 'plotNpde-covplot.R' 'plotNpde-distributionPlot.R' 'plotNpde-methods.R' 'plotNpde-plotFunctions.R' 'plotNpde-scatterplot.R'
NeedsCompilation: no
Packaged: 2021-02-25 10:55:36 UTC; eco
Author: Emmanuelle Comets [aut, cre] (<https://orcid.org/0000-0002-9150-9886>), Karl Brendel [ctb], Thi Huyen Tram Nguyen [ctb], Romain Leroux [ctb], France Mentre [ctb]
Repository: CRAN
Date/Publication: 2021-02-25 16:00:02 UTC

More information about npde at CRAN
Permanent link

Package mixComp updated to version 0.1-2 with previous version 0.1-1 dated 2020-11-18

Title: Estimation of Order of Mixture Distributions
Description: Methods for estimating the order of a mixture model. The approaches considered are based on the following papers (extensive list of references is available in the vignette): 1. Dacunha-Castelle, Didier, and Elisabeth Gassiat. The estimation of the order of a mixture model. Bernoulli 3, no. 3 (1997): 279-299. <https://projecteuclid.org/download/pdf_1/euclid.bj/1177334456>. 2. Woo, Mi-Ja, and T. N. Sriram. Robust estimation of mixture complexity. Journal of the American Statistical Association 101, no. 476 (2006): 1475-1486. <doi:10.1198/016214506000000555>. 3. Woo, Mi-Ja, and T. N. Sriram. Robust estimation of mixture complexity for count data. Computational statistics & data analysis 51, no. 9 (2007): 4379-4392. <doi:10.1016/j.csda.2006.06.006>. 4. Umashanger, T., and T. N. Sriram. L2E estimation of mixture complexity for count data. Computational statistics & data analysis 53, no. 12 (2009): 4243-4254. <doi:10.1016/j.csda.2009.05.013>. 5. Karlis, Dimitris, and Evdokia Xekalaki. On testing for the number of components in a mixed Poisson model. Annals of the Institute of Statistical Mathematics 51, no. 1 (1999): 149-162. <doi:10.1023/A:1003839420071>. 6. Cutler, Adele, and Olga I. Cordero-Brana. Minimum Hellinger Distance Estimation for Finite Mixture Models. Journal of the American Statistical Association 91, no. 436 (1996): 1716-1723. <doi:10.2307/2291601>. A number of datasets are included. 1. accidents, from Karlis, Dimitris, and Evdokia Xekalaki. On testing for the number of components in a mixed Poisson model. Annals of the Institute of Statistical Mathematics 51, no. 1 (1999): 149-162. <doi:10.1023/A:1003839420071>. 2. acidity, from Sybil L. Crawford, Morris H. DeGroot, Joseph B. Kadane & Mitchell J. Small (1992) Modeling Lake-Chemistry Distributions: Approximate Bayesian Methods for Estimating a Finite-Mixture Model, Technometrics, 34:4, 441-453. <doi:10.1080/00401706.1992.10484955>. 3. children, from Thisted, R. A. (1988). Elements of statistical computing: Numerical computation (Vol. 1). CRC Press. 4. faithful, from R package "datasets"; Azzalini, A. and Bowman, A. W. (1990). A look at some data on the Old Faithful geyser. Applied Statistics, 39, 357--365. <https://www.jstor.org/stable/2347385>. 5. shakespeare, from Efron, Bradley, and Ronald Thisted. "Estimating the number of unseen species: How many words did Shakespeare know?." Biometrika 63.3 (1976): 435-447. <doi:10.1093/biomet/63.3.435>.
Author: Anja Weigel [aut], Yulia Kulagina [aut, cre], Fadoua Balabdaoui [aut, ths], Lilian Mueller [ctb], Martin Maechler [ctb] (package 'nor1mix' as model, <https://orcid.org/0000-0002-8685-9910>)
Maintainer: Yulia Kulagina <yulia.kulagina@stat.math.ethz.ch>

Diff between mixComp versions 0.1-1 dated 2020-11-18 and 0.1-2 dated 2021-02-25

 DESCRIPTION           |   17 
 MD5                   |   67 +-
 NAMESPACE             |    4 
 R/0_Mix_utils.R       | 1657 ++++++++++++++++++++++++--------------------------
 R/1_hankel_np_utils.R |   73 +-
 R/2_hankel_p_utils.R  |   34 -
 R/3_distances_disc.R  |  115 +--
 R/4_distances_cont.R  |  100 +--
 R/5_lrt_utils.R       |   30 
 R/accidents.R         |only
 R/acidity.R           |only
 R/children.R          |only
 R/faithful.R          |only
 R/shakespeare.R       |only
 build/vignette.rds    |binary
 data                  |only
 inst/doc/mixComp.R    |  190 ++++-
 inst/doc/mixComp.Rmd  |  386 ++++++++---
 inst/doc/mixComp.html |  791 +++++++++++++++++------
 man/L2.disc.Rd        |   20 
 man/Mix.Rd            |  101 ---
 man/RtoDat.Rd         |   31 
 man/accidents.Rd      |only
 man/acidity.Rd        |only
 man/children.Rd       |only
 man/dMix.Rd           |   11 
 man/datMix.Rd         |   71 +-
 man/faithful.Rd       |only
 man/hellinger.cont.Rd |   42 -
 man/hellinger.disc.Rd |   41 -
 man/mix.lrt.Rd        |   24 
 man/nonparamHankel.Rd |   42 -
 man/paramHankel.Rd    |   28 
 man/plot.Mix.Rd       |only
 man/plot.rMix.Rd      |only
 man/rMix.Rd           |   71 --
 man/shakespeare.Rd    |only
 vignettes/mixComp.Rmd |  386 ++++++++---
 vignettes/refs.bib    |  189 +++++
 39 files changed, 2698 insertions(+), 1823 deletions(-)

More information about mixComp at CRAN
Permanent link

Package glmnetUtils updated to version 1.1.8 with previous version 1.1.7 dated 2021-02-23

Title: Utilities for 'Glmnet'
Description: Provides a formula interface for the 'glmnet' package for elasticnet regression, a method for cross-validating the alpha parameter, and other quality-of-life tools.
Author: Microsoft [cph], Hong Ooi [aut, cre]
Maintainer: Hong Ooi <hongooi73@gmail.com>

Diff between glmnetUtils versions 1.1.7 dated 2021-02-23 and 1.1.8 dated 2021-02-25

 DESCRIPTION                   |    6 +++---
 MD5                           |    8 ++++----
 NEWS.md                       |    4 ++++
 inst/doc/intro.html           |    4 ++--
 tests/testthat/test7_family.R |    3 +++
 5 files changed, 16 insertions(+), 9 deletions(-)

More information about glmnetUtils at CRAN
Permanent link

Package eplusr updated to version 0.14.1 with previous version 0.14.0 dated 2021-01-07

Title: A Toolkit for Using Whole Building Simulation Program 'EnergyPlus'
Description: A rich toolkit of using the whole building simulation program 'EnergyPlus'(<https://energyplus.net>), which enables programmatic navigation, modification of 'EnergyPlus' models and makes it less painful to do parametric simulations and analysis.
Author: Hongyuan Jia [aut, cre] (<https://orcid.org/0000-0002-0075-8183>)
Maintainer: Hongyuan Jia <hongyuan.jia@bears-berkeley.sg>

Diff between eplusr versions 0.14.0 dated 2021-01-07 and 0.14.1 dated 2021-02-25

 DESCRIPTION          |    6 +++---
 MD5                  |   16 ++++++++--------
 NAMESPACE            |    2 --
 NEWS.md              |    7 +++++++
 R/units.R            |   19 +++++++++++++------
 man/Epw.Rd           |    2 +-
 man/Idf.Rd           |    2 +-
 man/IdfObject.Rd     |    4 ++--
 man/get_idf_table.Rd |    2 +-
 9 files changed, 36 insertions(+), 24 deletions(-)

More information about eplusr at CRAN
Permanent link

New package BoostMLR with initial version 1.0.3
Package: BoostMLR
Type: Package
Title: Boosting for Multivariate Longitudinal Responses
Version: 1.0.3
Date: 2021-02-23
Author: Amol Pande, Hemant Ishwaran
Maintainer: Amol Pande <amoljpande@gmail.com>
Description: Jointly models the multivariate longitudinal responses and multiple covariates and time using gradient boosting approach.
License: GPL (>= 2)
Depends: R (>= 3.5.0)
Imports: Rcpp (>= 0.12.18), stats, splines, nlme
Suggests: mlbench
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2021-02-23 18:26:20 UTC; pandea2
Repository: CRAN
Date/Publication: 2021-02-25 16:00:07 UTC

More information about BoostMLR at CRAN
Permanent link

Package apollo updated to version 0.2.4 with previous version 0.2.3 dated 2021-01-20

Title: Tools for Choice Model Estimation and Application
Description: The Choice Modelling Centre (CMC) at the University of Leeds has developed flexible code for the estimation and application of choice models in R. Users are able to write their own model functions or use a mix of already available ones. Random heterogeneity, both continuous and discrete and at the level of individuals and choices, can be incorporated for all models. There is support for both standalone models and hybrid model structures. Both classical and Bayesian estimation is available, and multiple discrete continuous models are covered in addition to discrete choice. Multi-threading processing is supported for estimation and a large number of pre and post-estimation routines, including for computing posterior (individual-level) distributions are available. For examples, a manual, and a support forum, visit <http://www.ApolloChoiceModelling.com>. For more information on choice models see Train, K. (2009) <isbn:978-0-521-74738-7> and Hess, S. & Daly, A.J. (2014) <isbn:978-1-781-00314-5> for an overview of the field.
Author: Stephane Hess [aut], David Palma [aut, cre]
Maintainer: David Palma <D.Palma@leeds.ac.uk>

Diff between apollo versions 0.2.3 dated 2021-01-20 and 0.2.4 dated 2021-02-25

 apollo-0.2.3/apollo/tests/testthat/test-multicore.R  |only
 apollo-0.2.4/apollo/DESCRIPTION                      |    8 
 apollo-0.2.4/apollo/MD5                              |   57 
 apollo-0.2.4/apollo/R/apollo_conditionals.R          |    7 
 apollo-0.2.4/apollo/R/apollo_deltaMethod.R           |    1 
 apollo-0.2.4/apollo/R/apollo_dft.R                   | 1846 +++++++++----------
 apollo-0.2.4/apollo/R/apollo_fitsTest.R              |    2 
 apollo-0.2.4/apollo/R/apollo_insertFunc.R            |   29 
 apollo-0.2.4/apollo/R/apollo_lcConditionals.R        |    4 
 apollo-0.2.4/apollo/R/apollo_lcEM.R                  |    3 
 apollo-0.2.4/apollo/R/apollo_lcUnconditionals.r      |    2 
 apollo-0.2.4/apollo/R/apollo_makeDraws.R             |    2 
 apollo-0.2.4/apollo/R/apollo_makeGrad.R              |   13 
 apollo-0.2.4/apollo/R/apollo_mdcev.R                 |   11 
 apollo-0.2.4/apollo/R/apollo_mdcnev.R                |   10 
 apollo-0.2.4/apollo/R/apollo_mixEM.R                 |    9 
 apollo-0.2.4/apollo/R/apollo_prediction.R            |   67 
 apollo-0.2.4/apollo/R/apollo_preprocess.R            |   38 
 apollo-0.2.4/apollo/R/apollo_readBeta.R              |   20 
 apollo-0.2.4/apollo/R/apollo_sharesTest.R            |   96 
 apollo-0.2.4/apollo/R/apollo_validate.R              |   33 
 apollo-0.2.4/apollo/R/apollo_validateControl.R       |    7 
 apollo-0.2.4/apollo/R/apollo_validateInputs.R        |    1 
 apollo-0.2.4/apollo/inst/doc/apollofirstexample.html |   18 
 apollo-0.2.4/apollo/man/apollo_deltaMethod.Rd        |    1 
 apollo-0.2.4/apollo/man/apollo_fitsTest.Rd           |    1 
 apollo-0.2.4/apollo/man/apollo_lcEM.Rd               |    3 
 apollo-0.2.4/apollo/man/apollo_prediction.Rd         |    1 
 apollo-0.2.4/apollo/tests/testthat/test-mmnl.R       |  158 -
 apollo-0.2.4/apollo/tests/testthat/test-mnl.R        |  126 -
 30 files changed, 1337 insertions(+), 1237 deletions(-)

More information about apollo at CRAN
Permanent link

Package ragg updated to version 1.1.1 with previous version 1.1.0 dated 2021-02-15

Title: Graphic Devices Based on AGG
Description: Anti-Grain Geometry (AGG) is a high-quality and high-performance 2D drawing library. The 'ragg' package provides a set of graphic devices based on AGG to use as alternative to the raster devices provided through the 'grDevices' package.
Author: Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>

Diff between ragg versions 1.1.0 dated 2021-02-15 and 1.1.1 dated 2021-02-25

 DESCRIPTION                         |    6 +--
 MD5                                 |   12 +++----
 NEWS.md                             |    5 +++
 src/AggDevice.h                     |   10 +++---
 src/agg/include/agg_font_freetype.h |    3 +
 src/init_device.h                   |    5 ++-
 src/text_renderer.h                 |   59 +++++++++++++++++-------------------
 7 files changed, 55 insertions(+), 45 deletions(-)

More information about ragg at CRAN
Permanent link

Package miRecSurv updated to version 1.0.1 with previous version 0.0.1 dated 2020-09-25

Title: Left-Censored Recurrent Events Survival Models
Description: Fitting recurrent events survival models for left-censored data with multiple imputation of the number of previous episodes. See Hernández-Herrera G, Moriña D, Navarro A. (2020) <arXiv:2007.15031>.
Author: David Moriña [aut, cre] (<https://orcid.org/0000-0001-5949-7443>), Gilma Hernández-Herrera [aut], Albert Navarro [aut]
Maintainer: David Moriña <dmorina@ub.edu>

Diff between miRecSurv versions 0.0.1 dated 2020-09-25 and 1.0.1 dated 2021-02-25

 DESCRIPTION                |    9 ++++---
 MD5                        |   16 +++++++------
 NAMESPACE                  |    4 +++
 R/print.summary.recEvFit.R |only
 R/recEvFit.R               |   54 ++++++++++++++++++++-------------------------
 R/summary.recEvFit.R       |only
 man/miRecSurv-internal.Rd  |    4 +++
 man/miRecSurv-package.Rd   |   11 ++++-----
 man/recEvFit.Rd            |   33 +++++++++++++++++++++++----
 man/sim.data.Rd            |   23 +++++++++++++++++--
 10 files changed, 100 insertions(+), 54 deletions(-)

More information about miRecSurv at CRAN
Permanent link

Package taxadb updated to version 0.1.1 with previous version 0.1.0 dated 2020-02-19

Title: A High-Performance Local Taxonomic Database Interface
Description: Creates a local database of many commonly used taxonomic authorities and provides functions that can quickly query this data.
Author: Carl Boettiger [aut, cre] (<https://orcid.org/0000-0002-1642-628X>), Kari Norman [aut] (<https://orcid.org/0000-0002-2029-2325>), Jorrit Poelen [aut] (<https://orcid.org/0000-0003-3138-4118>), Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>), Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>)
Maintainer: Carl Boettiger <cboettig@gmail.com>

Diff between taxadb versions 0.1.0 dated 2020-02-19 and 0.1.1 dated 2021-02-25

 taxadb-0.1.0/taxadb/man/available_versions.Rd                 |only
 taxadb-0.1.1/taxadb/DESCRIPTION                               |   23 
 taxadb-0.1.1/taxadb/MD5                                       |   92 ++-
 taxadb-0.1.1/taxadb/NAMESPACE                                 |    6 
 taxadb-0.1.1/taxadb/NEWS.md                                   |only
 taxadb-0.1.1/taxadb/R/filter_by.R                             |   11 
 taxadb-0.1.1/taxadb/R/filter_common.R                         |    9 
 taxadb-0.1.1/taxadb/R/filter_id.R                             |    1 
 taxadb-0.1.1/taxadb/R/filter_name.R                           |    1 
 taxadb-0.1.1/taxadb/R/filter_rank.R                           |    1 
 taxadb-0.1.1/taxadb/R/fuzzy_filter.R                          |   19 
 taxadb-0.1.1/taxadb/R/get_ids.R                               |   19 
 taxadb-0.1.1/taxadb/R/get_names.R                             |   20 
 taxadb-0.1.1/taxadb/R/handling-duplicates.R                   |   17 
 taxadb-0.1.1/taxadb/R/mutate_db.R                             |   21 
 taxadb-0.1.1/taxadb/R/taxa_tbl.R                              |   34 -
 taxadb-0.1.1/taxadb/R/td_connect.R                            |  104 ----
 taxadb-0.1.1/taxadb/R/td_create.R                             |  115 ----
 taxadb-0.1.1/taxadb/R/tl_import.R                             |only
 taxadb-0.1.1/taxadb/README.md                                 |  168 +++----
 taxadb-0.1.1/taxadb/build/vignette.rds                        |binary
 taxadb-0.1.1/taxadb/inst/WORDLIST                             |    6 
 taxadb-0.1.1/taxadb/inst/doc/backends.html                    |  232 +---------
 taxadb-0.1.1/taxadb/inst/doc/data-sources.Rmd                 |    6 
 taxadb-0.1.1/taxadb/inst/doc/data-sources.html                |  209 ---------
 taxadb-0.1.1/taxadb/inst/examples/taxadb_github_releases.R    |only
 taxadb-0.1.1/taxadb/inst/extdata/prov.json                    |only
 taxadb-0.1.1/taxadb/man/common_contains.Rd                    |    5 
 taxadb-0.1.1/taxadb/man/common_starts_with.Rd                 |    5 
 taxadb-0.1.1/taxadb/man/filter_by.Rd                          |    3 
 taxadb-0.1.1/taxadb/man/filter_common.Rd                      |   10 
 taxadb-0.1.1/taxadb/man/filter_id.Rd                          |    3 
 taxadb-0.1.1/taxadb/man/filter_name.Rd                        |    3 
 taxadb-0.1.1/taxadb/man/filter_rank.Rd                        |    3 
 taxadb-0.1.1/taxadb/man/fuzzy_filter.Rd                       |    5 
 taxadb-0.1.1/taxadb/man/get_ids.Rd                            |   16 
 taxadb-0.1.1/taxadb/man/get_names.Rd                          |   13 
 taxadb-0.1.1/taxadb/man/mutate_db.Rd                          |   14 
 taxadb-0.1.1/taxadb/man/name_contains.Rd                      |    7 
 taxadb-0.1.1/taxadb/man/name_starts_with.Rd                   |    7 
 taxadb-0.1.1/taxadb/man/taxa_tbl.Rd                           |   18 
 taxadb-0.1.1/taxadb/man/td_connect.Rd                         |   11 
 taxadb-0.1.1/taxadb/man/td_create.Rd                          |   18 
 taxadb-0.1.1/taxadb/man/td_disconnect.Rd                      |    4 
 taxadb-0.1.1/taxadb/man/tl_import.Rd                          |only
 taxadb-0.1.1/taxadb/tests/testthat/test-get_ids.R             |    9 
 taxadb-0.1.1/taxadb/tests/testthat/test-handling-duplicates.R |only
 taxadb-0.1.1/taxadb/tests/testthat/test-mutate-db.R           |    4 
 taxadb-0.1.1/taxadb/tests/testthat/test-taxadb.R              |   15 
 taxadb-0.1.1/taxadb/tests/testthat/test-tl_import.R           |only
 taxadb-0.1.1/taxadb/vignettes/data-sources.Rmd                |    6 
 51 files changed, 444 insertions(+), 849 deletions(-)

More information about taxadb at CRAN
Permanent link

Package powerbydesign updated to version 1.0.5 with previous version 1.0.4 dated 2018-04-04

Title: Power Estimates for ANOVA Designs
Description: Functions for bootstrapping the power of ANOVA designs based on estimated means and standard deviations of the conditions. Please refer to the documentation of the boot.power.anova() function for further details.
Author: Frank Papenmeier [aut, cre]
Maintainer: Frank Papenmeier <frank.papenmeier@uni-tuebingen.de>

Diff between powerbydesign versions 1.0.4 dated 2018-04-04 and 1.0.5 dated 2021-02-25

 DESCRIPTION                     |   10 +++++-----
 MD5                             |   10 +++++-----
 NEWS                            |    8 ++++++++
 R/boot.power.anova.R            |    2 +-
 man/design.anova.Rd             |   10 +++++++---
 man/plot.power_by_samplesize.Rd |    3 +--
 6 files changed, 27 insertions(+), 16 deletions(-)

More information about powerbydesign at CRAN
Permanent link

Package popgenr updated to version 0.2 with previous version 0.1 dated 2020-07-02

Title: Accompaniment to Population Genetics with R: An Introduction for Life Scientists
Description: Provides several data sets and functions to accompany the book "Population Genetics with R: An Introduction for Life Scientists" (2021, ISBN:9780198829546).
Author: Aki Jarl Laruson; Floyd Reed
Maintainer: Aki Jarl Laruson <akijarl@gmail.com>

Diff between popgenr versions 0.1 dated 2020-07-02 and 0.2 dated 2021-02-25

 .Rbuildignore    |only
 DESCRIPTION      |   14 +--
 MD5              |   22 ++--
 NAMESPACE        |    5 -
 R/Dcalc.R        |  246 +++++++++++++++++++++++++++----------------------------
 R/coal.R         |only
 man/Dcalc.Rd     |   74 ++++++++--------
 man/coal.Rd      |only
 man/fly.Rd       |   33 +++----
 man/genotypes.Rd |   30 +++---
 man/moth.Rd      |   31 +++---
 man/snp.Rd       |   28 +++---
 man/thirteen.Rd  |   29 +++---
 man/whale.Rd     |   33 ++++---
 14 files changed, 277 insertions(+), 268 deletions(-)

More information about popgenr at CRAN
Permanent link

Package constants updated to version 1.0.1 with previous version 1.0.0 dated 2020-11-11

Title: Reference on Constants, Units and Uncertainty
Description: CODATA internationally recommended values of the fundamental physical constants, provided as symbols for direct use within the R language. Optionally, the values with uncertainties and/or units are also provided if the 'errors', 'units' and/or 'quantities' packages are installed. The Committee on Data for Science and Technology (CODATA) is an interdisciplinary committee of the International Council for Science which periodically provides the internationally accepted set of values of the fundamental physical constants. This package contains the "2018 CODATA" version, published on May 2019: Eite Tiesinga, Peter J. Mohr, David B. Newell, and Barry N. Taylor (2020) <https://physics.nist.gov/cuu/Constants/>.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>

Diff between constants versions 1.0.0 dated 2020-11-11 and 1.0.1 dated 2021-02-25

 DESCRIPTION              |    8 ++++----
 MD5                      |   12 ++++++------
 NEWS.md                  |    4 ++++
 R/constants.R            |   13 +++++++++----
 README.md                |   12 +++++++-----
 man/codata.Rd            |    2 +-
 man/constants-package.Rd |    2 +-
 7 files changed, 32 insertions(+), 21 deletions(-)

More information about constants at CRAN
Permanent link

Package eechidna updated to version 1.4.1 with previous version 1.4.0 dated 2019-11-08

Title: Exploring Election and Census Highly Informative Data Nationally for Australia
Description: Data from the seven Australian Federal Elections (House of Representatives) between 2001 and 2019, and from the four Australian Censuses over the same period. Includes tools for visualizing and analysing the data, as well as imputing Census data for years in which a Census does not occur. This package incorporates data that is copyright Commonwealth of Australia (Australian Electoral Commission and Australian Bureau of Statistics) 2019.
Author: Jeremy Forbes [aut, cre], Di Cook [aut], Anthony Ebert [aut], Heike Hofmann [aut], Rob Hyndman [aut], Thomas Lumley [aut], Ben Marwick [aut], Carson Sievert [aut], Mingzhu Sun [aut], Dilini Talagala [aut], Nicholas Tierney [aut], Nathaniel Tomasetti [aut], Earo Wang [aut], Fang Zhou [aut], Commonwealth of Australia AEC [cph], Australian Bureau of Statistics ABS [cph]
Maintainer: Jeremy Forbes <jeforbes14@gmail.com>

Diff between eechidna versions 1.4.0 dated 2019-11-08 and 1.4.1 dated 2021-02-25

 eechidna-1.4.0/eechidna/man/abs2001.Rd                         |only
 eechidna-1.4.0/eechidna/man/abs2004.Rd                         |only
 eechidna-1.4.0/eechidna/man/abs2006.Rd                         |only
 eechidna-1.4.0/eechidna/man/abs2007.Rd                         |only
 eechidna-1.4.0/eechidna/man/abs2010.Rd                         |only
 eechidna-1.4.0/eechidna/man/abs2011.Rd                         |only
 eechidna-1.4.0/eechidna/man/abs2013.Rd                         |only
 eechidna-1.4.0/eechidna/man/abs2016.Rd                         |only
 eechidna-1.4.0/eechidna/man/abs2019.Rd                         |only
 eechidna-1.4.0/eechidna/man/eechidnaR-package.Rd               |only
 eechidna-1.4.0/eechidna/man/fp01.Rd                            |only
 eechidna-1.4.0/eechidna/man/fp04.Rd                            |only
 eechidna-1.4.0/eechidna/man/fp07.Rd                            |only
 eechidna-1.4.0/eechidna/man/fp10.Rd                            |only
 eechidna-1.4.0/eechidna/man/fp13.Rd                            |only
 eechidna-1.4.0/eechidna/man/fp16.Rd                            |only
 eechidna-1.4.0/eechidna/man/fp19.Rd                            |only
 eechidna-1.4.0/eechidna/man/tcp01.Rd                           |only
 eechidna-1.4.0/eechidna/man/tcp04.Rd                           |only
 eechidna-1.4.0/eechidna/man/tcp07.Rd                           |only
 eechidna-1.4.0/eechidna/man/tcp10.Rd                           |only
 eechidna-1.4.0/eechidna/man/tcp13.Rd                           |only
 eechidna-1.4.0/eechidna/man/tcp16.Rd                           |only
 eechidna-1.4.0/eechidna/man/tcp19.Rd                           |only
 eechidna-1.4.0/eechidna/man/tpp01.Rd                           |only
 eechidna-1.4.0/eechidna/man/tpp04.Rd                           |only
 eechidna-1.4.0/eechidna/man/tpp07.Rd                           |only
 eechidna-1.4.0/eechidna/man/tpp10.Rd                           |only
 eechidna-1.4.0/eechidna/man/tpp13.Rd                           |only
 eechidna-1.4.0/eechidna/man/tpp16.Rd                           |only
 eechidna-1.4.0/eechidna/man/tpp19.Rd                           |only
 eechidna-1.4.1/eechidna/DESCRIPTION                            |   26 
 eechidna-1.4.1/eechidna/MD5                                    |  190 -
 eechidna-1.4.1/eechidna/R/data.R                               | 1588 +---------
 eechidna-1.4.1/eechidna/R/git-download.R                       |   98 
 eechidna-1.4.1/eechidna/R/shapefiles.R                         |    2 
 eechidna-1.4.1/eechidna/data/abs2001.rda                       |binary
 eechidna-1.4.1/eechidna/data/abs2004.rda                       |binary
 eechidna-1.4.1/eechidna/data/abs2006.rda                       |binary
 eechidna-1.4.1/eechidna/data/abs2007.rda                       |binary
 eechidna-1.4.1/eechidna/data/abs2010.rda                       |binary
 eechidna-1.4.1/eechidna/data/abs2011.rda                       |binary
 eechidna-1.4.1/eechidna/data/abs2013.rda                       |binary
 eechidna-1.4.1/eechidna/data/abs2016.rda                       |binary
 eechidna-1.4.1/eechidna/data/abs2019.rda                       |binary
 eechidna-1.4.1/eechidna/data/fp01.rda                          |binary
 eechidna-1.4.1/eechidna/data/fp04.rda                          |binary
 eechidna-1.4.1/eechidna/data/fp07.rda                          |binary
 eechidna-1.4.1/eechidna/data/fp10.rda                          |binary
 eechidna-1.4.1/eechidna/data/fp13.rda                          |binary
 eechidna-1.4.1/eechidna/data/fp16.rda                          |binary
 eechidna-1.4.1/eechidna/data/fp19.rda                          |binary
 eechidna-1.4.1/eechidna/data/nat_data01.rda                    |binary
 eechidna-1.4.1/eechidna/data/nat_data04.rda                    |binary
 eechidna-1.4.1/eechidna/data/nat_data07.rda                    |binary
 eechidna-1.4.1/eechidna/data/nat_data10.rda                    |binary
 eechidna-1.4.1/eechidna/data/nat_data13.rda                    |binary
 eechidna-1.4.1/eechidna/data/nat_data16.rda                    |binary
 eechidna-1.4.1/eechidna/data/nat_data19.rda                    |binary
 eechidna-1.4.1/eechidna/data/nat_map01.rda                     |binary
 eechidna-1.4.1/eechidna/data/nat_map04.rda                     |binary
 eechidna-1.4.1/eechidna/data/nat_map07.rda                     |binary
 eechidna-1.4.1/eechidna/data/nat_map10.rda                     |binary
 eechidna-1.4.1/eechidna/data/nat_map13.rda                     |binary
 eechidna-1.4.1/eechidna/data/nat_map16.rda                     |binary
 eechidna-1.4.1/eechidna/data/nat_map19.rda                     |binary
 eechidna-1.4.1/eechidna/data/tcp01.rda                         |binary
 eechidna-1.4.1/eechidna/data/tcp04.rda                         |binary
 eechidna-1.4.1/eechidna/data/tcp07.rda                         |binary
 eechidna-1.4.1/eechidna/data/tcp10.rda                         |binary
 eechidna-1.4.1/eechidna/data/tcp13.rda                         |binary
 eechidna-1.4.1/eechidna/data/tcp16.rda                         |binary
 eechidna-1.4.1/eechidna/data/tcp19.rda                         |binary
 eechidna-1.4.1/eechidna/data/tpp01.rda                         |binary
 eechidna-1.4.1/eechidna/data/tpp04.rda                         |binary
 eechidna-1.4.1/eechidna/data/tpp07.rda                         |binary
 eechidna-1.4.1/eechidna/data/tpp10.rda                         |binary
 eechidna-1.4.1/eechidna/data/tpp13.rda                         |binary
 eechidna-1.4.1/eechidna/data/tpp16.rda                         |binary
 eechidna-1.4.1/eechidna/data/tpp19.rda                         |binary
 eechidna-1.4.1/eechidna/inst/doc/eechidna-intro.R              |   32 
 eechidna-1.4.1/eechidna/inst/doc/eechidna-intro.Rmd            |    4 
 eechidna-1.4.1/eechidna/inst/doc/eechidna-intro.html           |  221 -
 eechidna-1.4.1/eechidna/man/aec_carto_f.Rd                     |   13 
 eechidna-1.4.1/eechidna/man/allocate_electorate.Rd             |    8 
 eechidna-1.4.1/eechidna/man/census.Rd                          |only
 eechidna-1.4.1/eechidna/man/circle.Rd                          |   13 
 eechidna-1.4.1/eechidna/man/dorling.Rd                         |   24 
 eechidna-1.4.1/eechidna/man/first_preference.Rd                |only
 eechidna-1.4.1/eechidna/man/firstpref_pollingbooth_download.Rd |    6 
 eechidna-1.4.1/eechidna/man/get_electorate_shapes.Rd           |   11 
 eechidna-1.4.1/eechidna/man/launch_app.Rd                      |   20 
 eechidna-1.4.1/eechidna/man/nat_data01.Rd                      |    8 
 eechidna-1.4.1/eechidna/man/nat_data04.Rd                      |   10 
 eechidna-1.4.1/eechidna/man/nat_data07.Rd                      |   10 
 eechidna-1.4.1/eechidna/man/nat_data10.Rd                      |   10 
 eechidna-1.4.1/eechidna/man/nat_data13.Rd                      |   10 
 eechidna-1.4.1/eechidna/man/nat_data16.Rd                      |   37 
 eechidna-1.4.1/eechidna/man/nat_data19.Rd                      |   37 
 eechidna-1.4.1/eechidna/man/nat_data_download.Rd               |   41 
 eechidna-1.4.1/eechidna/man/nat_map01.Rd                       |    8 
 eechidna-1.4.1/eechidna/man/nat_map04.Rd                       |   10 
 eechidna-1.4.1/eechidna/man/nat_map07.Rd                       |   10 
 eechidna-1.4.1/eechidna/man/nat_map10.Rd                       |   10 
 eechidna-1.4.1/eechidna/man/nat_map13.Rd                       |   10 
 eechidna-1.4.1/eechidna/man/nat_map16.Rd                       |   10 
 eechidna-1.4.1/eechidna/man/nat_map19.Rd                       |   10 
 eechidna-1.4.1/eechidna/man/nat_map_download.Rd                |   43 
 eechidna-1.4.1/eechidna/man/tcp.Rd                             |only
 eechidna-1.4.1/eechidna/man/tpp.Rd                             |only
 eechidna-1.4.1/eechidna/man/twocand_pollingbooth_download.Rd   |    6 
 eechidna-1.4.1/eechidna/man/twoparty_pollingbooth_download.Rd  |    6 
 eechidna-1.4.1/eechidna/tests/testthat/test-maps.R             |only
 eechidna-1.4.1/eechidna/vignettes/eechidna-intro.Rmd           |    4 
 114 files changed, 822 insertions(+), 1724 deletions(-)

More information about eechidna at CRAN
Permanent link

Package dssd updated to version 0.2.2 with previous version 0.2.1 dated 2020-02-20

Title: Distance Sampling Survey Design
Description: Creates survey designs for distance sampling surveys. These designs can be assessed for various effort and coverage statistics. Once the user is satisfied with the design characteristics they can generate a set of transects to use in their distance sampling survey. Many of the designs implemented in this R package were first made available in our 'Distance' for Windows software and are detailed in Chapter 7 of Advanced Distance Sampling, Buckland et. al. (2008, ISBN-13: 978-0199225873). Find out more about estimating animal/plant abundance with distance sampling at <http://distancesampling.org/>.
Author: Laura Marshall <lhm@st-andrews.ac.uk>
Maintainer: Laura Marshall <lhm@st-andrews.ac.uk>

Diff between dssd versions 0.2.1 dated 2020-02-20 and 0.2.2 dated 2021-02-25

 DESCRIPTION                       |    8 ++++----
 MD5                               |   14 +++++++-------
 NAMESPACE                         |    1 +
 NEWS                              |    5 +++++
 R/Region.R                        |    1 +
 build/vignette.rds                |binary
 inst/doc/GettingStarted.html      |   28 ++++++++++++++++++----------
 inst/doc/MultiStrataVignette.html |   34 +++++++++++++++++++++-------------
 8 files changed, 57 insertions(+), 34 deletions(-)

More information about dssd at CRAN
Permanent link

New package subtee with initial version 0.3-7.1
Package: subtee
Type: Package
Title: Subgroup Treatment Effect Estimation in Clinical Trials
Version: 0.3-7.1
Date: 2021-02-24
Author: Nicolas Ballarini [aut, cre], Bjoern Bornkamp [aut], Marius Thomas [aut, cre], Baldur Magnusson [ctb]
Maintainer: Nicolas Ballarini <nicoballarini@gmail.com>
Description: Naive and adjusted treatment effect estimation for subgroups. Model averaging (Bornkamp et.al, 2016 <doi:10.1002/pst.1796>) and bagging (Rosenkranz, 2016 <doi:10.1002/bimj.201500147>) are proposed to address the problem of selection bias in treatment effect estimates for subgroups. The package can be used for all commonly encountered type of outcomes in clinical trials (continuous, binary, survival, count). Additional functions are provided to build the subgroup variables to be used and to plot the results using forest plots.
Imports: MASS, ggplot2, survival, matrixStats
Suggests: knitr, rmarkdown, parallel, testthat
VignetteBuilder: knitr
Depends: R (>= 2.10)
License: GPL-2
NeedsCompilation: no
Packaged: 2021-02-25 00:16:39 UTC; nicolasballarini
Repository: CRAN
Date/Publication: 2021-02-25 11:10:03 UTC

More information about subtee at CRAN
Permanent link

Package NFCP updated to version 0.2.0 with previous version 0.1.0 dated 2021-01-13

Title: N-Factor Commodity Pricing Through Term Structure Estimation
Description: Commodity pricing models are (systems of) stochastic differential equations that are utilized for the valuation and hedging of commodity contingent claims (i.e. derivative products on the commodity) and other commodity related investments. Commodity pricing models that capture market dynamics are of great importance to commodity market participants in order to exercise sound investment and risk-management strategies. Parameters of commodity pricing models are estimated through maximum likelihood estimation, using available term structure futures data of a commodity. 'NFCP' (n-factor commodity pricing) provides a framework for the modeling, parameter estimation, probabilistic forecasting, option valuation and simulation of commodity prices through state space and Monte Carlo methods, risk-neutral valuation and Kalman filtering. 'NFCP' allows the commodity pricing model to consist of n correlated factors, with both random walk and mean-reverting elements. The n-factor commodity pricing model framework was first presented in the work of Cortazar and Naranjo (2006) <doi:10.1002/fut.20198>. Examples presented in 'NFCP' replicate the two-factor crude oil commodity pricing model presented in the prolific work of Schwartz and Smith (2000) <doi:10.1287/mnsc.46.7.893.12034> with the approximate term structure futures data applied within this study provided in the 'NFCP' package.
Author: Thomas Aspinall [aut, cre] (<https://orcid.org/0000-0002-6968-1989>), Adrian Gepp [aut] (<https://orcid.org/0000-0003-1666-5501>), Geoff Harris [aut] (<https://orcid.org/0000-0003-4284-8619>), Simone Kelly [aut] (<https://orcid.org/0000-0002-6528-8557>), Colette Southam [aut] (<https://orcid.org/0000-0001-7263-2347>), Bruce Vanstone [aut] (<https://orcid.org/0000-0002-3977-2468>)
Maintainer: Thomas Aspinall <tomaspinall2512@gmail.com>

Diff between NFCP versions 0.1.0 dated 2021-01-13 and 0.2.0 dated 2021-02-25

 NFCP-0.1.0/NFCP/R/KF-dependencies.R           |only
 NFCP-0.1.0/NFCP/man/NFCP.bounds.Rd            |only
 NFCP-0.2.0/NFCP/DESCRIPTION                   |   10 
 NFCP-0.2.0/NFCP/MD5                           |   62 -
 NFCP-0.2.0/NFCP/NAMESPACE                     |    3 
 NFCP-0.2.0/NFCP/NEWS.md                       |   13 
 NFCP-0.2.0/NFCP/R/American-Options.R          |only
 NFCP-0.2.0/NFCP/R/Analysis.R                  |   55 -
 NFCP-0.2.0/NFCP/R/Data-Descriptions.R         |  103 +-
 NFCP-0.2.0/NFCP/R/Dependencies.R              |only
 NFCP-0.2.0/NFCP/R/Kalman-Filter.R             |   24 
 NFCP-0.2.0/NFCP/R/Simulations.R               |   31 
 NFCP-0.2.0/NFCP/R/TS-PE.R                     |   90 +
 NFCP-0.2.0/NFCP/README.md                     |    2 
 NFCP-0.2.0/NFCP/build/NFCP.pdf                |binary
 NFCP-0.2.0/NFCP/build/vignette.rds            |binary
 NFCP-0.2.0/NFCP/inst/doc/NFCP.R               |  194 ++-
 NFCP-0.2.0/NFCP/inst/doc/NFCP.Rmd             | 1298 ++++++++++++++------------
 NFCP-0.2.0/NFCP/inst/doc/NFCP.html            | 1050 +++++++++------------
 NFCP-0.2.0/NFCP/man/A_T.Rd                    |    2 
 NFCP-0.2.0/NFCP/man/American.Option.Value.Rd  |only
 NFCP-0.2.0/NFCP/man/European.Option.Value.Rd  |   12 
 NFCP-0.2.0/NFCP/man/Futures.Price.Forecast.Rd |    2 
 NFCP-0.2.0/NFCP/man/Futures.Price.Simulate.Rd |   13 
 NFCP-0.2.0/NFCP/man/NFCP.Domains.Rd           |only
 NFCP-0.2.0/NFCP/man/NFCP.Kalman.filter.Rd     |  618 ++++++------
 NFCP-0.2.0/NFCP/man/NFCP.MLE.Rd               |  424 ++++----
 NFCP-0.2.0/NFCP/man/NFCP.Parameters.Rd        |  238 ++--
 NFCP-0.2.0/NFCP/man/SS.Oil.Rd                 |    5 
 NFCP-0.2.0/NFCP/man/Spot.Price.Forecast.Rd    |    2 
 NFCP-0.2.0/NFCP/man/Spot.Price.Simulate.Rd    |   10 
 NFCP-0.2.0/NFCP/man/Stitch.Contracts.Rd       |   13 
 NFCP-0.2.0/NFCP/man/TSFit.Volatility.Rd       |    8 
 NFCP-0.2.0/NFCP/man/cov_func.Rd               |    4 
 NFCP-0.2.0/NFCP/vignettes/NFCP.Rmd            | 1298 ++++++++++++++------------
 35 files changed, 2943 insertions(+), 2641 deletions(-)

More information about NFCP at CRAN
Permanent link

Package loon updated to version 1.3.3 with previous version 1.3.2 dated 2021-02-23

Title: Interactive Statistical Data Visualization
Description: An extendable toolkit for interactive data visualization and exploration.
Author: Adrian Waddell [aut], R. Wayne Oldford [aut, cre, ths], Zehao Xu [ctb], Martin Gauch [ctb]
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>

Diff between loon versions 1.3.2 dated 2021-02-23 and 1.3.3 dated 2021-02-25

 DESCRIPTION                              |    8 ++---
 MD5                                      |   24 ++++++++--------
 NEWS.md                                  |   20 +++++++++++++
 R/l_binCut.R                             |    3 ++
 R/loonGrob_l_compound.R                  |    2 -
 R/loonGrob_l_pairs.R                     |   22 +++++++++++----
 inst/doc/introduction.html               |    4 +-
 inst/doc/teaching-example-smoothing.html |    4 +-
 man/l_binCut.Rd                          |    3 ++
 man/l_plot_arguments.Rd                  |    8 +++++
 tests/testthat/test_facets.R             |   19 +++++++------
 tests/testthat/test_linking.R            |   45 +++++++++++++++----------------
 tests/testthat/test_sync.R               |   41 ++++++++++++----------------
 13 files changed, 124 insertions(+), 79 deletions(-)

More information about loon at CRAN
Permanent link

Package lingmatch updated to version 1.0.1 with previous version 1.0.0 dated 2021-02-17

Title: Linguistic Matching and Accommodation
Description: Measure similarity between texts. Offers a variety of processing tools and similarity metrics to facilitate flexible representation of texts and matching. Implements forms of Language Style Matching (Ireland & Pennebaker, 2010) <doi:10.1037/a0020386> and Latent Semantic Analysis (Landauer & Dumais, 1997) <doi:10.1037/0033-295X.104.2.211>.
Author: Micah Iserman
Maintainer: Micah Iserman <micah.iserman@gmail.com>

Diff between lingmatch versions 1.0.0 dated 2021-02-17 and 1.0.1 dated 2021-02-25

 DESCRIPTION                       |    6 +--
 MD5                               |   16 +++++----
 NEWS.md                           |only
 R/RcppExports.R                   |   62 +++++++++++++++++++-------------------
 R/lingmatch.R                     |   37 +++++++++++++---------
 R/utils.R                         |   59 +++++++++++++++++++++---------------
 README.md                         |only
 src/utils.cpp                     |    5 +--
 tests/testthat/test-lma_termcat.R |    6 +--
 tests/testthat/test-utils.R       |    9 +++--
 10 files changed, 111 insertions(+), 89 deletions(-)

More information about lingmatch at CRAN
Permanent link

Package PSweight updated to version 1.1.3 with previous version 1.1.2 dated 2020-10-05

Title: Propensity Score Weighting for Causal Inference with Observational Studies and Randomized Trials
Description: Supports propensity score weighting analysis of observational studies and randomized trials. Enables the estimation and inference of average causal effects with binary and multiple treatments using overlap weights (ATO), inverse probability of treatment weights (ATE), average treatment effect among the treated weights (ATT), matching weights (ATM) and entropy weights (ATEN), with and without propensity score trimming. These weights are members of the family of balancing weights introduced in Li, Morgan and Zaslavsky (2018) <doi:10.1080/01621459.2016.1260466> and Li and Li (2019) <doi:10.1214/19-AOAS1282>.
Author: Tianhui Zhou [aut, cre], Guangyu Tong [aut], Fan Li [aut], Laine Thomas [aut], Fan Li [aut]
Maintainer: Tianhui Zhou <tianhui.zhou@duke.edu>

Diff between PSweight versions 1.1.2 dated 2020-10-05 and 1.1.3 dated 2021-02-25

 PSweight-1.1.2/PSweight/R/ATENbin.R             |only
 PSweight-1.1.2/PSweight/R/ATENbin_o.R           |only
 PSweight-1.1.2/PSweight/R/ATENbin_p.R           |only
 PSweight-1.1.2/PSweight/R/ATENmul.R             |only
 PSweight-1.1.2/PSweight/R/ATENmul_o.R           |only
 PSweight-1.1.2/PSweight/R/ATENmul_p.R           |only
 PSweight-1.1.2/PSweight/R/ATEbin.R              |only
 PSweight-1.1.2/PSweight/R/ATEbin_o.R            |only
 PSweight-1.1.2/PSweight/R/ATEbin_p.R            |only
 PSweight-1.1.2/PSweight/R/ATEmul.R              |only
 PSweight-1.1.2/PSweight/R/ATEmul_o.R            |only
 PSweight-1.1.2/PSweight/R/ATEmul_p.R            |only
 PSweight-1.1.2/PSweight/R/ATMbin.R              |only
 PSweight-1.1.2/PSweight/R/ATMbin_o.R            |only
 PSweight-1.1.2/PSweight/R/ATMbin_p.R            |only
 PSweight-1.1.2/PSweight/R/ATMmul.R              |only
 PSweight-1.1.2/PSweight/R/ATMmul_o.R            |only
 PSweight-1.1.2/PSweight/R/ATMmul_p.R            |only
 PSweight-1.1.2/PSweight/R/ATObin.R              |only
 PSweight-1.1.2/PSweight/R/ATObin_o.R            |only
 PSweight-1.1.2/PSweight/R/ATObin_p.R            |only
 PSweight-1.1.2/PSweight/R/ATOmul.R              |only
 PSweight-1.1.2/PSweight/R/ATOmul_o.R            |only
 PSweight-1.1.2/PSweight/R/ATOmul_p.R            |only
 PSweight-1.1.2/PSweight/R/ATTbin.R              |only
 PSweight-1.1.2/PSweight/R/ATTbin_o.R            |only
 PSweight-1.1.2/PSweight/R/ATTbin_p.R            |only
 PSweight-1.1.2/PSweight/R/ATTmul.R              |only
 PSweight-1.1.2/PSweight/R/ATTmul_o.R            |only
 PSweight-1.1.2/PSweight/R/ATTmul_p.R            |only
 PSweight-1.1.2/PSweight/R/SumStat_f.R           |only
 PSweight-1.1.2/PSweight/R/SumStat_p.R           |only
 PSweight-1.1.3/PSweight/DESCRIPTION             |   10 
 PSweight-1.1.3/PSweight/MD5                     |   74 +---
 PSweight-1.1.3/PSweight/NAMESPACE               |   10 
 PSweight-1.1.3/PSweight/R/NCDS.R                |only
 PSweight-1.1.3/PSweight/R/Outmethod.R           |only
 PSweight-1.1.3/PSweight/R/PSmethod.R            |only
 PSweight-1.1.3/PSweight/R/PStrim.R              |   86 ++---
 PSweight-1.1.3/PSweight/R/PSweight.R            |  226 +------------
 PSweight-1.1.3/PSweight/R/SumStat.R             |  406 +++++++++++++++++++++++-
 PSweight-1.1.3/PSweight/R/bin_est.R             |only
 PSweight-1.1.3/PSweight/R/coef_PSweight.R       |only
 PSweight-1.1.3/PSweight/R/mul_est.R             |only
 PSweight-1.1.3/PSweight/R/plot_SumStat.R        |   28 +
 PSweight-1.1.3/PSweight/R/print_PStrim.R        |only
 PSweight-1.1.3/PSweight/R/print_PSweightsum.R   |   32 +
 PSweight-1.1.3/PSweight/R/pt_est.R              |only
 PSweight-1.1.3/PSweight/R/sand_var.R            |only
 PSweight-1.1.3/PSweight/R/summary_PSweight.R    |   33 +
 PSweight-1.1.3/PSweight/R/summary_SumStat.R     |   23 -
 PSweight-1.1.3/PSweight/R/tilt.R                |only
 PSweight-1.1.3/PSweight/R/vcov_PSweight.R       |only
 PSweight-1.1.3/PSweight/data/NCDS.rda           |only
 PSweight-1.1.3/PSweight/man/NCDS.Rd             |only
 PSweight-1.1.3/PSweight/man/PStrim.Rd           |   34 +-
 PSweight-1.1.3/PSweight/man/PSweight.Rd         |   31 +
 PSweight-1.1.3/PSweight/man/SumStat.Rd          |   26 +
 PSweight-1.1.3/PSweight/man/coef.PSweight.Rd    |only
 PSweight-1.1.3/PSweight/man/print.PStrim.Rd     |only
 PSweight-1.1.3/PSweight/man/summary.PSweight.Rd |   13 
 PSweight-1.1.3/PSweight/man/vcov.PSweight.Rd    |only
 62 files changed, 679 insertions(+), 353 deletions(-)

More information about PSweight at CRAN
Permanent link

Package powerEQTL updated to version 0.2.7 with previous version 0.2.2 dated 2020-11-01

Title: Power and Sample Size Calculation for eQTL Analysis
Description: Power and sample size calculation for eQTL analysis based on ANOVA or simple linear regression. It can also calculate power/sample size for testing the association of a SNP to a continuous type phenotype.
Author: Xianjun Dong [aut, ctb], Xiaoqi Li [aut, ctb], Tzuu-Wang Chang [aut, ctb], Scott T. Weiss [aut, ctb], Weiliang Qiu [aut, cre]
Maintainer: Weiliang Qiu <weiliang.qiu@gmail.com>

Diff between powerEQTL versions 0.2.2 dated 2020-11-01 and 0.2.7 dated 2021-02-25

 powerEQTL-0.2.2/powerEQTL/README.md                     |only
 powerEQTL-0.2.7/powerEQTL/DESCRIPTION                   |   13 
 powerEQTL-0.2.7/powerEQTL/MD5                           |   21 
 powerEQTL-0.2.7/powerEQTL/NAMESPACE                     |   18 
 powerEQTL-0.2.7/powerEQTL/NEWS                          |   22 
 powerEQTL-0.2.7/powerEQTL/R/powerEQTL.scRNAseq.sim.R    |only
 powerEQTL-0.2.7/powerEQTL/R/simDat_scRNAseq_eQTL.R      |only
 powerEQTL-0.2.7/powerEQTL/man/powerEQTL.ANOVA.Rd        |  327 ++++++-------
 powerEQTL-0.2.7/powerEQTL/man/powerEQTL.sLR.Rd          |  331 ++++++-------
 powerEQTL-0.2.7/powerEQTL/man/powerEQTL.scRNAseq.Rd     |  397 ++++++++--------
 powerEQTL-0.2.7/powerEQTL/man/powerEQTL.scRNAseq.sim.Rd |only
 powerEQTL-0.2.7/powerEQTL/man/powerLME.Rd               |  371 +++++++-------
 powerEQTL-0.2.7/powerEQTL/man/powerLMEnoCov.Rd          |  367 +++++++-------
 powerEQTL-0.2.7/powerEQTL/man/simDat.eQTL.scRNAseq.Rd   |only
 14 files changed, 959 insertions(+), 908 deletions(-)

More information about powerEQTL at CRAN
Permanent link

Package mvPot updated to version 0.1.5 with previous version 0.1.4 dated 2018-04-09

Title: Multivariate Peaks-over-Threshold Modelling for Spatial Extreme Events
Description: Tools for high-dimensional peaks-over-threshold inference and simulation of spatial extremal processes. Key references include de Fondeville and Davison (2018) <doi:10.1093/biomet/asy026>, Thibaud and Opitz (2015) <doi:10.1093/biomet/asv045>, Wadsworth and Tawn <doi:10.1093/biomet/ast042>.
Author: Raphael de Fondeville [aut, cre], Leo Belzile [aut] (<https://orcid.org/0000-0002-9135-014X>), Emeric Thibaud [ctb]
Maintainer: Raphael de Fondeville <raphael.de-fondeville@epfl.ch>

Diff between mvPot versions 0.1.4 dated 2018-04-09 and 0.1.5 dated 2021-02-25

 DESCRIPTION                          |   19 +-
 MD5                                  |   50 +++---
 NAMESPACE                            |    1 
 NEWS.md                              |   10 +
 R/censored_likelihood.R              |  162 +++++++++++++-------
 R/censored_likelihood_XS.R           |  185 ++++++++++++++---------
 R/generating_vector.R                |    3 
 R/gradient_score.R                   |   26 +--
 R/mvNormQMC.R                        |   39 +++--
 R/mvTQMC.R                           |   45 ++++-
 R/rBrownResnick.R                    |   17 --
 R/rExtremalStudentPar.R              |   45 ++++-
 R/rMvtPar.R                          |   34 ++--
 R/spectral_likelihood.R              |   22 +-
 man/censoredLikelihoodBR.Rd          |   55 +++++--
 man/censoredLikelihoodXS.Rd          |   38 +++-
 man/genVecQMC.Rd                     |    3 
 man/mvPot-package.Rd                 |   29 +--
 man/mvTProbQuasiMonteCarlo.Rd        |   20 +-
 man/mvtNormQuasiMonteCarlo.Rd        |   15 +
 man/rExtremalStudentParetoProcess.Rd |   36 +++-
 man/scoreEstimation.Rd               |   21 ++
 man/simulBrownResnick.Rd             |    3 
 man/simulPareto.Rd                   |    6 
 man/spectralLikelihood.Rd            |    8 -
 src/mvnCppAdaptedSTL.cpp             |  272 ++++++++++++++++++++++++++++++-----
 26 files changed, 808 insertions(+), 356 deletions(-)

More information about mvPot at CRAN
Permanent link

Package mapSpain updated to version 0.2.0 with previous version 0.1.2 dated 2021-01-05

Title: Administrative Boundaries of Spain
Description: Administrative Boundaries of Spain at several levels (CCAA, Provinces, Municipalities) based on the GISCO Eurostat database <https://ec.europa.eu/eurostat/web/gisco> and 'CartoBase SIANE' from 'Instituto Geografico Nacional' <https://www.ign.es/>. It also provides a 'leaflet' plugin and the ability of downloading and processing static tiles.
Author: Diego Hernangómez [aut, cre, cph] (<https://orcid.org/0000-0001-8457-4658>), EuroGeographics [cph] (for the administrative boundaries.), Instituto Geográfico Nacional [cph] (for the administrative boundaries.)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>

Diff between mapSpain versions 0.1.2 dated 2021-01-05 and 0.2.0 dated 2021-02-25

 DESCRIPTION                             |   19 +
 MD5                                     |  105 +++++----
 NAMESPACE                               |    9 
 NEWS.md                                 |   38 ++-
 R/addProviderEspTiles.R                 |   83 ++++---
 R/data.R                                |  348 +++++++++++++++++---------------
 R/esp_dict.R                            |  154 ++++++++------
 R/esp_getTiles.R                        |  148 ++++++++-----
 R/esp_get_can_box.R                     |  102 +++++----
 R/esp_get_capimun.R                     |only
 R/esp_get_ccaa.R                        |  267 +++++++++++++++++++++---
 R/esp_get_country.R                     |   50 ++--
 R/esp_get_gridmap.R                     |  176 ++++++++++------
 R/esp_get_hydrobasin.R                  |only
 R/esp_get_hypsobath.R                   |only
 R/esp_get_munic.R                       |  333 ++++++++++++++++++++++++------
 R/esp_get_nuts.R                        |  183 ++++++++--------
 R/esp_get_prov.R                        |  318 +++++++++++++++++++++++------
 R/esp_get_railway.R                     |only
 R/esp_get_rivers.R                      |only
 R/esp_get_roads.R                       |only
 R/mapSpain-package.R                    |   60 +++--
 R/utils_names.R                         |   53 +++-
 R/utils_siane.R                         |only
 R/utils_tiles.R                         |   83 ++++---
 README.md                               |   44 ++--
 inst/CITATION                           |    5 
 inst/schemaorg.json                     |   10 
 inst/tinytest/test_esp_getTiles.R       |    1 
 inst/tinytest/test_esp_get_can_box.R    |    1 
 inst/tinytest/test_esp_get_capimun.R    |only
 inst/tinytest/test_esp_get_ccaa.R       |   50 ++++
 inst/tinytest/test_esp_get_gridmap.R    |    4 
 inst/tinytest/test_esp_get_hydrobasin.R |only
 inst/tinytest/test_esp_get_hypsobath.R  |only
 inst/tinytest/test_esp_get_munic.R      |   31 ++
 inst/tinytest/test_esp_get_nuts.R       |    3 
 inst/tinytest/test_esp_get_prov.R       |   58 +++++
 inst/tinytest/test_esp_get_railway.R    |only
 inst/tinytest/test_esp_get_rivers.R     |only
 inst/tinytest/test_esp_get_roads.R      |only
 man/addProviderEspTiles.Rd              |   67 ++++--
 man/esp_codelist.Rd                     |   62 ++---
 man/esp_dict.Rd                         |   51 ++--
 man/esp_getTiles.Rd                     |   50 ++--
 man/esp_get_can_box.Rd                  |   73 ++++--
 man/esp_get_capimun.Rd                  |only
 man/esp_get_ccaa.Rd                     |   99 +++++++--
 man/esp_get_country.Rd                  |   10 
 man/esp_get_gridmap.Rd                  |   71 +++---
 man/esp_get_hydrobasin.Rd               |only
 man/esp_get_hypsobath.Rd                |only
 man/esp_get_munic.Rd                    |   75 ++++++
 man/esp_get_nuts.Rd                     |   83 +++----
 man/esp_get_prov.Rd                     |  103 +++++++--
 man/esp_get_railway.Rd                  |only
 man/esp_get_rivers.Rd                   |only
 man/esp_get_roads.Rd                    |only
 man/esp_munic.sf.Rd                     |   40 +--
 man/esp_nuts.sf.Rd                      |   36 +--
 man/leaflet.providersESP.df.Rd          |  130 +++++------
 man/mapSpain-package.Rd                 |   40 +--
 man/pobmun19.Rd                         |    7 
 63 files changed, 2499 insertions(+), 1234 deletions(-)

More information about mapSpain at CRAN
Permanent link

New package kernelPhil with initial version 0.1
Package: kernelPhil
Title: Kernel Smoothing Tools for Philology and Historical Dialectology
Version: 0.1
Authors@R: person(given = "Tamsin", family = "Blaxter", role = c("aut", "cre"), email = "ttb26@cam.ac.uk", comment = c(ORCID = "0000-0002-1466-8306"))
URL: http://www.icge.co.uk/
Description: Contains kernel smoothing tools designed for use by historical dialectologists and philologists for exploring spatial and temporal patterns in noisy historical language data, such as that obtained from historical texts. The main way in which these might differ from other implementations of kernel smoothing is that they assume that the function (linguistic variable) being explored has the form of the relative frequency of a series of discrete possibilities (linguistic variants). This package also offers a way of exploring distributions in 2-dimensional space and in time with separate kernels, and tools for identifying appropriate bandwidths for these.
License: GPL (>= 3)
Encoding: UTF-8
Imports: benchmarkme, directlabels, dplyr, ggplot2, grDevices, gridExtra, Hmisc, pbapply, rgdal, reshape2, stats, utils, wordspace
LazyData: true
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-24 12:34:46 UTC; tammsin
Author: Tamsin Blaxter [aut, cre] (<https://orcid.org/0000-0002-1466-8306>)
Maintainer: Tamsin Blaxter <ttb26@cam.ac.uk>
Repository: CRAN
Date/Publication: 2021-02-25 10:50:02 UTC

More information about kernelPhil at CRAN
Permanent link

New package gargoyle with initial version 0.0.1
Package: gargoyle
Title: An Event-Based Mechanism for 'Shiny'
Version: 0.0.1
Authors@R: person("Colin", "Fay", email = "contact@colinfay.me", role = c("aut", "cre"))
Description: An event-Based framework for building 'Shiny' apps. Instead of relying on standard 'Shiny' reactive objects, this package allow to relying on a lighter set of triggers, so that reactive contexts can be invalidated with more control.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Imports: shiny, attempt
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2021-02-24 10:33:13 UTC; colin
Author: Colin Fay [aut, cre]
Maintainer: Colin Fay <contact@colinfay.me>
Repository: CRAN
Date/Publication: 2021-02-25 10:30:02 UTC

More information about gargoyle at CRAN
Permanent link

Package feisr updated to version 1.2.0 with previous version 1.1.4 dated 2021-01-15

Title: Estimating Fixed Effects Individual Slope Models
Description: Provides the function feis() to estimate fixed effects individual slope (FEIS) models. The FEIS model constitutes a more general version of the often-used fixed effects (FE) panel model, as implemented in the package 'plm' by Croissant and Millo (2008) <doi:10.18637/jss.v027.i02>. In FEIS models, data are not only person demeaned like in conventional FE models, but detrended by the predicted individual slope of each person or group. Estimation is performed by applying least squares lm() to the transformed data. For more details on FEIS models see Bruederl and Ludwig (2015, ISBN:1446252442); Frees (2001) <doi:10.2307/3316008>; Polachek and Kim (1994) <doi:10.1016/0304-4076(94)90075-2>; Ruettenauer and Ludwig (2020) <doi:10.1177/0049124120926211>; Wooldridge (2010, ISBN:0262294354). To test consistency of conventional FE and random effects estimators against heterogeneous slopes, the package also provides the functions feistest() for an artificial regression test and bsfeistest() for a bootstrapped version of the Hausman test.
Author: Tobias Ruettenauer [aut, cre] (<https://orcid.org/0000-0001-5747-9735>), Volker Ludwig [aut] (<https://orcid.org/0000-0003-3118-3172>)
Maintainer: Tobias Ruettenauer <ruettenauer@sowi.uni-kl.de>

Diff between feisr versions 1.1.4 dated 2021-01-15 and 1.2.0 dated 2021-02-25

 DESCRIPTION                                |    6 
 MD5                                        |   39 ++--
 NAMESPACE                                  |    2 
 NEWS.md                                    |   20 ++
 R/feis.R                                   |  235 +++++++++++++++++++----------
 R/feistest.R                               |  100 ++++++++++--
 R/methods.R                                |   12 +
 R/summary_functions.R                      |    4 
 R/utility_functions.R                      |  123 ++++++++++++---
 build/partial.rdb                          |binary
 build/vignette.rds                         |binary
 inst/doc/feisr-vignette.Rmd                |    2 
 inst/doc/feisr-vignette.html               |   15 +
 man/bsfeistest.Rd                          |    4 
 man/detrend.Rd                             |    7 
 man/feis.Rd                                |   13 +
 man/predict.feis.Rd                        |    4 
 tests/testthat/test_CollinearityHandling.R |   46 +++++
 tests/testthat/test_detrend.R              |   15 +
 tests/testthat/test_weights.R              |only
 vignettes/feisr-vignette.Rmd               |    2 
 21 files changed, 486 insertions(+), 163 deletions(-)

More information about feisr at CRAN
Permanent link

New package DiallelAnalysisR with initial version 0.4.0
Package: DiallelAnalysisR
Type: Package
Title: Diallel Analysis with R
Version: 0.4.0
Authors@R: c( person( c("Muhammad", "Yaseen") , email = "myaseen208@gmail.com" , role = c("aut", "cre", "cph") , comment = c(ORCID = "0000-0002-5923-1714") ) , person( c("Kent", "M.", "Eskridge") , email = "keskridge1@unl.edu" , role = c("ctb") ) , person( c("Pedro", "A. M.", "Barbosa") , email = "pedro.barbosa@usp.br" , role = c("ctb") ) )
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Description: Performs Diallel Analysis with R using Griffing's and Hayman's approaches. Four different Methods (1: Method-I (Parents + F1's + reciprocals); 2: Method-II (Parents and one set of F1's); 3: Method-III (One set of F1's and reciprocals); 4: Method-IV (One set of F1's only)) and two Models (1: Fixed Effects Model; 2: Random Effects Model) can be applied using Griffing's approach.
Depends: R (>= 3.5.0)
Copyright: 2019-2020, UAF
License: GPL-2 | GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
URL: https://github.com/myaseen208/DiallelAnalysisR https://CRAN.R-project.org/package=DiallelAnalysisR https://myaseen208.github.io/DiallelAnalysisR/
BugReports: https://github.com/myaseen208/DiallelAnalysisR/issues
Note: Department of Mathematics and Statistics, University of Agriculture Faisalabad, Faisalabad-Pakistan.
Imports: ggplot2, stats
Suggests: knitr, rmarkdown, testthat
NeedsCompilation: no
Packaged: 2021-02-24 10:09:13 UTC; myaseen208
Author: Muhammad Yaseen [aut, cre, cph] (<https://orcid.org/0000-0002-5923-1714>), Kent M. Eskridge [ctb], Pedro A. M. Barbosa [ctb]
Repository: CRAN
Date/Publication: 2021-02-25 10:40:07 UTC

More information about DiallelAnalysisR at CRAN
Permanent link

Package units updated to version 0.7-0 with previous version 0.6-7 dated 2020-06-13

Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors, matrices and arrays: automatic propagation, conversion, derivation and simplification of units; raising errors in case of unit incompatibility. Compatible with the POSIXct, Date and difftime classes. Uses the UNIDATA udunits library and unit database for unit compatibility checking and conversion. Documentation about 'units' is provided in the paper by Pebesma, Mailund & Hiebert (2016, <doi:10.32614/RJ-2016-061>), included in this package as a vignette; see 'citation("units")' for details.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>), Thomas Mailund [aut], Tomasz Kalinowski [aut], James Hiebert [ctb], Iñaki Ucar [ctb] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

Diff between units versions 0.6-7 dated 2020-06-13 and 0.7-0 dated 2021-02-25

 units-0.6-7/units/R/deprecated.R                        |only
 units-0.6-7/units/R/set_units.R                         |only
 units-0.6-7/units/R/sysdata.rda                         |only
 units-0.6-7/units/man/as_units.Rd                       |only
 units-0.6-7/units/man/deprecated.Rd                     |only
 units-0.6-7/units/man/set_units.Rd                      |only
 units-0.6-7/units/man/ud_units.Rd                       |only
 units-0.6-7/units/src/io.c                              |only
 units-0.6-7/units/src/io.h                              |only
 units-0.7-0/units/DESCRIPTION                           |    8 
 units-0.7-0/units/MD5                                   |  114 -
 units-0.7-0/units/NAMESPACE                             |   13 
 units-0.7-0/units/NEWS.md                               |   27 
 units-0.7-0/units/R/RcppExports.R                       |   30 
 units-0.7-0/units/R/arith.R                             |  107 -
 units-0.7-0/units/R/conversion.R                        |  243 +-
 units-0.7-0/units/R/database.R                          |only
 units-0.7-0/units/R/helpers.R                           |only
 units-0.7-0/units/R/init.R                              |   10 
 units-0.7-0/units/R/make_units.R                        |  294 +--
 units-0.7-0/units/R/math.R                              |   34 
 units-0.7-0/units/R/misc.R                              |   16 
 units-0.7-0/units/R/mixed.R                             |   44 
 units-0.7-0/units/R/options.R                           |   10 
 units-0.7-0/units/R/plot.R                              |   46 
 units-0.7-0/units/R/udunits.R                           |   34 
 units-0.7-0/units/R/user_conversion.R                   |  199 +-
 units-0.7-0/units/R/valid_udunits.R                     |  318 ---
 units-0.7-0/units/build/vignette.rds                    |binary
 units-0.7-0/units/configure                             |   18 
 units-0.7-0/units/demo/cf.R                             |    6 
 units-0.7-0/units/demo/ggforce.R                        |   16 
 units-0.7-0/units/demo/year.R                           |   10 
 units-0.7-0/units/inst/doc/measurement_units_in_R.Rmd   |    5 
 units-0.7-0/units/inst/doc/measurement_units_in_R.html  | 1379 +++++++++++++++-
 units-0.7-0/units/inst/doc/units.R                      |   33 
 units-0.7-0/units/inst/doc/units.Rmd                    |   40 
 units-0.7-0/units/inst/doc/units.html                   |  384 +++-
 units-0.7-0/units/man/Ops.units.Rd                      |   17 
 units-0.7-0/units/man/as_difftime.Rd                    |    4 
 units-0.7-0/units/man/boxplot.units.Rd                  |    2 
 units-0.7-0/units/man/deparse_unit.Rd                   |    6 
 units-0.7-0/units/man/drop_units.Rd                     |    2 
 units-0.7-0/units/man/install_conversion_constant.Rd    |   32 
 units-0.7-0/units/man/install_symbolic_unit.Rd          |   17 
 units-0.7-0/units/man/install_unit.Rd                   |only
 units-0.7-0/units/man/keep_units.Rd                     |only
 units-0.7-0/units/man/load_units_xml.Rd                 |only
 units-0.7-0/units/man/plot.units.Rd                     |   12 
 units-0.7-0/units/man/ud_are_convertible.Rd             |only
 units-0.7-0/units/man/units.Rd                          |  290 +++
 units-0.7-0/units/man/valid_udunits.Rd                  |   10 
 units-0.7-0/units/src/RcppExports.cpp                   |   85 
 units-0.7-0/units/src/udunits.cpp                       |  119 -
 units-0.7-0/units/tests/plot.R                          |   12 
 units-0.7-0/units/tests/testthat/test_arith.R           |   50 
 units-0.7-0/units/tests/testthat/test_conversion.R      |   36 
 units-0.7-0/units/tests/testthat/test_helpers.R         |only
 units-0.7-0/units/tests/testthat/test_math.R            |   32 
 units-0.7-0/units/tests/testthat/test_misc.R            |   28 
 units-0.7-0/units/tests/testthat/test_summaries.R       |   14 
 units-0.7-0/units/tests/testthat/test_udunits.R         |   17 
 units-0.7-0/units/tests/testthat/test_user_conversion.R |   69 
 units-0.7-0/units/vignettes/measurement_units_in_R.Rmd  |    5 
 units-0.7-0/units/vignettes/measurement_units_in_R.bib  |   12 
 units-0.7-0/units/vignettes/units.Rmd                   |   40 
 66 files changed, 3021 insertions(+), 1328 deletions(-)

More information about units at CRAN
Permanent link

New package spsComps with initial version 0.1.0
Package: spsComps
Title: 'systemPipeShiny' UI and Server Components
Version: 0.1.0
Date: 2021-02-18
Authors@R: c(person(given = "Le", family = "Zhang", role = c("aut", "cre"), email = "lezhang100@gmail.com"))
Description: The systemPipeShiny (SPS) framework comes with many UI and server components. However, installing the whole framework is heavy and takes some time. If you would like to use UI and server components from SPS in your own Shiny apps, but do not want to install the whole framework, just install this package.
Depends: R (>= 4.0.0), shiny (>= 1.5.0), spsUtil
Imports: assertthat, stringr, glue (>= 1.4.0), magrittr, bsplus, shinyFiles, shinyWidgets, shinydashboardPlus, shinytoastr, shinyAce, htmltools, shinydashboard, shinyjqui, vroom, dplyr, utils
Suggests: testthat
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/lz100/spsComps/issues
URL: https://github.com/lz100/spsComps
RoxygenNote: 7.1.1
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2021-02-24 06:25:19 UTC; lz
Author: Le Zhang [aut, cre]
Maintainer: Le Zhang <lezhang100@gmail.com>
Repository: CRAN
Date/Publication: 2021-02-25 09:40:02 UTC

More information about spsComps at CRAN
Permanent link

New package RespirAnalyzer with initial version 1.0.0
Package: RespirAnalyzer
Type: Package
Title: Analysis Functions of Respiratory Data
Version: 1.0.0
Date: 2021-2-18
Authors@R: c(person("Xiaohua Douglas", "Zhang", role = c("aut", "cph"), email = "douglaszhang@um.edu.mo"), person("Teng", "Zhang", role = "aut"), person("Xinzheng", "Dong", role = c("aut", "cre"), email = "dong.xinzheng@foxmail.com"))
Author: Xiaohua Douglas Zhang [aut, cph], Teng Zhang [aut], Xinzheng Dong [aut, cre]
Maintainer: Xinzheng Dong <dong.xinzheng@foxmail.com>
Description: Provides functions for the complete analysis of respiratory data. Consists of a set of functions that allow to preprocessing respiratory data, calculate both regular statistics and nonlinear statistics, conduct group comparison and visualize the results. Especially, Power Spectral Density ('PSD') (A. Eke (2000) <doi:10.1007/s004249900135>), 'MultiScale Entropy(MSE)' ('Madalena Costa(2002)' <doi:10.1103/PhysRevLett.89.068102>) and 'MultiFractal Detrended Fluctuation Analysis(MFDFA)' ('Jan W.Kantelhardt' (2002) <doi:10.1016/S0378-4371(02)01383-3>) were applied for the analysis of respiratory data.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: Rcpp (>= 1.0.2), signal, pracma
LinkingTo: Rcpp
RoxygenNote: 7.1.1
Depends: R (>= 3.5.0)
NeedsCompilation: yes
Packaged: 2021-02-24 07:46:40 UTC; 11547
Repository: CRAN
Date/Publication: 2021-02-25 10:00:03 UTC

More information about RespirAnalyzer at CRAN
Permanent link

New package dumbbell with initial version 0.1
Package: dumbbell
Type: Package
Title: Displaying Changes Between Two Points Using Dumbbell Plots
Version: 0.1
Author: Foo Cheung
Maintainer: Foo Cheung <foocheung@yahoo.com>
Description: Creates a Dumbbell Plot.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: dplyr,tidyr, tidyverse, ggplot2, rlang, utils, data.table, rstatix
URL: https://github.com/foocheung2/dumbbell
NeedsCompilation: no
Packaged: 2021-02-23 23:57:26 UTC; cheungf
RoxygenNote: 7.1.1
Collate: 'global.R' 'dumbbell.R'
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Repository: CRAN
Date/Publication: 2021-02-25 09:10:02 UTC

More information about dumbbell at CRAN
Permanent link

New package communication with initial version 0.1
Package: communication
Type: Package
Title: Feature Extraction and Model Estimation for Audio of Human Speech
Version: 0.1
Date: 2021-02-12
Authors@R: c(person("Dean", "Knox", email = "dcknox@upenn.edu", role = c("aut")), person("Christopher", "Lucas", email = "christopher.lucas@wustl.edu", role = c("aut", "cre")), person("Guilherme", "Duarte", role = "ctb"), person("Alex", "Shmuley", role = "ctb"), person("Vineet", "Bansal", role = "ctb"), person("Vadym", "Vashchenko", role = "ctb"))
Maintainer: Christopher Lucas <christopher.lucas@wustl.edu>
Description: Provides fast, easy feature extraction of human speech and model estimation with hidden Markov models. Flexible extraction of phonetic features and their derivatives, with necessary preprocessing options like feature standardization. Communication can estimate supervised and unsupervised hidden Markov models with these features, with cross validation and corrections for auto-correlation in features. Methods developed in Knox and Lucas (2021) <doi:10.7910/DVN.8BTOHQ>.
Depends: R (>= 3.5.0)
License: GPL (>= 2)
Imports: Rcpp (>= 1.0.2), purrr, magrittr, diagram, GGally, grid, useful, ggplot2, reshape2, tuneR, wrassp, gtools, signal, plyr, RColorBrewer, scales, abind, igraph, gtable
LinkingTo: Rcpp, RcppArmadillo (>= 0.9.700.2.0)
RoxygenNote: 7.1.1
Encoding: UTF-8
Suggests: knitr, qpdf, rmarkdown, testthat
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2021-02-24 00:34:37 UTC; christopher
Author: Dean Knox [aut], Christopher Lucas [aut, cre], Guilherme Duarte [ctb], Alex Shmuley [ctb], Vineet Bansal [ctb], Vadym Vashchenko [ctb]
Repository: CRAN
Date/Publication: 2021-02-25 09:20:02 UTC

More information about communication at CRAN
Permanent link

New package ClinSigMeasures with initial version 1.0
Package: ClinSigMeasures
Type: Package
Title: Clinical Significance Measures
Version: 1.0
Author: Mike Malek-Ahmadi <michael.malekahmadi@bannerhealth.com>
Maintainer: Mike Malek-Ahmadi <michael.malekahmadi@bannerhealth.com>
Description: Provides measures of effect sizes from summarized continuous variables as well as diagnostic accuracy statistics for 2x2 table data. Includes functions for Cohen's d, Cohen's q, partial eta-squared, coefficient of variation, odds ratio, likelihood ratios, sensitivity, specificity, positive and negative predictive values, and Youden index.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-24 01:06:00 UTC; Mike
Repository: CRAN
Date/Publication: 2021-02-25 09:10:05 UTC

More information about ClinSigMeasures at CRAN
Permanent link

New package blocklength with initial version 0.1.3
Package: blocklength
Type: Package
Title: Select Optimal Block-Length to Bootstrap Dependent Data (Block Bootstrap)
Version: 0.1.3
Authors@R: c( person("Alec", "Stashevsky", email = "alec@alecstashevsky.com", role = c("aut", "cre")), person("Sergio", "Armella", role = "ctb") )
Maintainer: Alec Stashevsky <alec@alecstashevsky.com>
Description: A set of functions to select the optimal block-length for a dependent bootstrap (block-bootstrap). Includes the Hall, Horowitz, and Jing (1995) <doi:10.1093/biomet/82.3.561#'> cross-validation method and the Politis and White (2004) <doi:10.1081/ETC-120028836> Spectral Density Plug-in method with a corresponding set of S3 plot methods.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Suggests: testthat, covr, parallel
Imports: tseries, stats
URL: https://github.com/Alec-Stashevsky/blocklength
BugReports: https://github.com/Alec-Stashevsky/blocklength/issues
NeedsCompilation: no
Packaged: 2021-02-24 04:44:47 UTC; Alec
Author: Alec Stashevsky [aut, cre], Sergio Armella [ctb]
Repository: CRAN
Date/Publication: 2021-02-25 09:30:06 UTC

More information about blocklength at CRAN
Permanent link

Package BoostMLR (with last version 1.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-03-15 1.0.2
2020-03-14 1.0.1

Permanent link
New package SoilTaxonomy with initial version 0.1
Package: SoilTaxonomy
Title: United States Soil Taxonomy
Description: Taxonomic dictionaries, formative element lists, and functions related to the maintenance, development and application of U.S. Soil Taxonomy.
Version: 0.1
Authors@R: c(person(given="Dylan", family="Beaudette", role = c("aut"), email = "dylan.beaudette@usda.gov"), person(given="Andrew", family="Brown", email="andrew.g.brown@usda.gov", role = c("aut", "cre")))
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Depends: R (>= 3.5)
License: GPL (>= 3)
Encoding: UTF-8
LazyLoad: yes
Repository: CRAN
URL: https://github.com/ncss-tech/SoilTaxonomy
BugReports: https://github.com/ncss-tech/SoilTaxonomy/issues
Imports: stringr
Suggests: testthat, covr
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-23 16:48:01 UTC; Andrew.G.Brown
Author: Dylan Beaudette [aut], Andrew Brown [aut, cre]
Date/Publication: 2021-02-25 08:30:02 UTC

More information about SoilTaxonomy at CRAN
Permanent link

New package SAFARI with initial version 0.1.0
Package: SAFARI
Title: Shape Analysis for AI-Reconstructed Images
Version: 0.1.0
Authors@R: c( person(given = "Esteban", family = "Fernandez Morales", role = c("aut", "cre"), email = "esteban.fernandezmorales@utdallas.edu"), person(given = "Qiwei", family = "Li", role = c("aut"), email = "qiwei.li@utdallas.edu"))
Description: Provides functionality for image processing and shape analysis in the context of reconstructed medical images generated by deep learning-based methods or standard image processing algorithms and produced from different medical imaging types, such as X-ray, Computational Tomography (CT), Magnetic Resonance Imaging (MRI), and pathology imaging. Specifically, offers tools to segment regions of interest and to extract quantitative shape descriptors for applications in signal processing, statistical analysis and modeling, and machine learning.
Depends: R (>= 3.5.0)
Imports: caTools, EBImage, graphics, lattice, png
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
URL: https://github.com/estfernandez/SAFARI
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-23 19:34:09 UTC; estfernandez
Author: Esteban Fernandez Morales [aut, cre], Qiwei Li [aut]
Maintainer: Esteban Fernandez Morales <esteban.fernandezmorales@utdallas.edu>
Repository: CRAN
Date/Publication: 2021-02-25 08:50:02 UTC

More information about SAFARI at CRAN
Permanent link

New package geofi with initial version 1.0.0
Type: Package
Package: geofi
Title: Access Finnish Geospatial Data
Version: 1.0.0
Date: 2021-02-20
Authors@R: c(person(given = "Markus", family = "Kainu", role = c("aut", "cre"), email = "markus.kainu@kapsi.fi", comment = c(ORCID = "0000-0003-1376-503X")), person(given = "Joona", family = "Lehtomaki", role = "aut", email = "joona.lehtomaki@iki.fi", comment = c(ORCID = "0000-0002-7891-0843")), person(given = "Juuso", family = "Parkkinen", role = "ctb", comment = c(ORCID = "0000-0002-7818-5901")), person(given = "Jani", family = "Miettinen", role = "ctb"), person(given = "Pyry", family = "Kantanen", role = "ctb"), person(given = "Leo", family = "Lahti", role = "aut", email = "leo.lahti@iki.fi", comment = c(ORCID = "0000-0001-5537-637X")))
Description: Tools for reading Finnish open geospatial data in R.
License: BSD_2_clause + file LICENSE
URL: https://github.com/ropengov/geofi
Depends: R (>= 3.5.0)
Imports: curl, dplyr, httpcache, httr, methods, purrr, rlang, sf, xml2 (>= 1.2.0), yaml
Suggests: covr, geofacet, ggplot2, ggtern, httptest (>= 4.0.0), janitor, knitr, leaflet, pxweb, rmarkdown, sotkanet, testthat, tidyr, tmap, tricolore, patchwork, ggrepel, htmltools, readr
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-23 20:47:47 UTC; aurelius
Author: Markus Kainu [aut, cre] (<https://orcid.org/0000-0003-1376-503X>), Joona Lehtomaki [aut] (<https://orcid.org/0000-0002-7891-0843>), Juuso Parkkinen [ctb] (<https://orcid.org/0000-0002-7818-5901>), Jani Miettinen [ctb], Pyry Kantanen [ctb], Leo Lahti [aut] (<https://orcid.org/0000-0001-5537-637X>)
Maintainer: Markus Kainu <markus.kainu@kapsi.fi>
Repository: CRAN
Date/Publication: 2021-02-25 09:00:02 UTC

More information about geofi at CRAN
Permanent link

Package bayesefa (with last version 0.0.0.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-02-10 0.0.0.4

Permanent link
Package matrixprofiler (with last version 0.1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-02-17 0.1.3

Permanent link
Package rotations (with last version 1.6.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-04-03 1.6.1
2020-03-28 1.6

Permanent link

Wed, 24 Feb 2021

Package sociome updated to version 2.0.0 with previous version 1.4.2 dated 2020-08-03

Title: Operationalizing Social Determinants of Health Data for Researchers
Description: Accesses raw data via API and calculates social determinants of health measures for user-specified locations in the US, returning them in tidyverse- and sf-compatible data frames.
Author: Nik Krieger [aut, cre], Jarrod Dalton [aut], Cindy Wang [aut], Adam Perzynski [aut], National Institutes of Health/National Institute on Aging [fnd] (The development of this software package was supported by a research grant from the National Institutes of Health/National Institute on Aging, (Principal Investigators: Jarrod E. Dalton, PhD and Adam T. Perzynski, PhD; Grant Number: 5R01AG055480-02). All of its contents are solely the responsibility of the authors and do not necessarily represent the official views of the NIH.)
Maintainer: Nik Krieger <nk@case.edu>

Diff between sociome versions 1.4.2 dated 2020-08-03 and 2.0.0 dated 2021-02-24

 DESCRIPTION                                       |   16 -
 MD5                                               |   30 -
 NEWS.md                                           |   16 +
 R/calculate_adi.R                                 |  300 ++++++++++++-------
 R/data_documentation.R                            |   40 +-
 R/get_adi.R                                       |  347 +++++++++++-----------
 R/get_geoids.R                                    |   23 +
 R/sysdata.rda                                     |binary
 R/validation.R                                    |  126 ++++++-
 inst/extdata/census_variables_dataset_creator.Rmd |   51 +--
 man/acs_vars.Rd                                   |   38 +-
 man/calculate_adi.Rd                              |   42 +-
 man/decennial_vars.Rd                             |    2 
 man/get_adi.Rd                                    |   99 +++---
 man/get_geoids.Rd                                 |    6 
 tests/testthat/test_tidycensus_related.R          |  166 ++--------
 16 files changed, 725 insertions(+), 577 deletions(-)

More information about sociome at CRAN
Permanent link

Package RAthena updated to version 2.0.1 with previous version 2.0.0 dated 2021-02-22

Title: Connect to 'AWS Athena' using 'Boto3' ('DBI' Interface)
Description: Designed to be compatible with the R package 'DBI' (Database Interface) when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>. To do this 'Python' 'Boto3' Software Development Kit ('SDK') <https://boto3.amazonaws.com/v1/documentation/api/latest/index.html> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>

Diff between RAthena versions 2.0.0 dated 2021-02-22 and 2.0.1 dated 2021-02-24

 DESCRIPTION                              |    6 +--
 MD5                                      |   16 +++++-----
 NAMESPACE                                |    1 
 NEWS.md                                  |    4 ++
 R/Connection.R                           |   48 +++++++++++++------------------
 R/Result.R                               |   35 ++++++++++++++++++++++
 R/util.R                                 |   26 +++++++++-------
 man/dbGetStatement.Rd                    |only
 tests/testthat/test-keyboard-interrupt.R |only
 tests/testthat/test-metadata.R           |    2 +
 10 files changed, 90 insertions(+), 48 deletions(-)

More information about RAthena at CRAN
Permanent link

Package noctua updated to version 2.0.1 with previous version 2.0.0 dated 2021-02-22

Title: Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI' Interface)
Description: Designed to be compatible with the 'R' package 'DBI' (Database Interface) when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>. To do this the 'R' 'AWS' Software Development Kit ('SDK') 'paws' <https://github.com/paws-r/paws> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>

Diff between noctua versions 2.0.0 dated 2021-02-22 and 2.0.1 dated 2021-02-24

 DESCRIPTION                              |    6 ++--
 MD5                                      |   16 ++++++-----
 NAMESPACE                                |    1 
 NEWS.md                                  |    4 ++
 R/Connection.R                           |   45 +++++++++++++------------------
 R/Result.R                               |   36 ++++++++++++++++++++++++
 R/utils.R                                |   25 ++++++++++-------
 man/dbGetStatement.Rd                    |only
 tests/testthat/test-keyboard-interrupt.R |only
 tests/testthat/test-metadata.R           |    2 +
 10 files changed, 90 insertions(+), 45 deletions(-)

More information about noctua at CRAN
Permanent link

Package stringfish updated to version 0.15.0 with previous version 0.14.2 dated 2020-09-05

Title: Alt String Implementation
Description: Provides an extendable, performant and multithreaded 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph], Phillip Hazel [ctb] (Bundled PCRE2 code), Zoltan Herczeg [ctb, cph] (Bundled PCRE2 code), University of Cambridge [cph] (Bundled PCRE2 code), Tilera Corporation [cph] (Stack-less Just-In-Time compiler bundled with PCRE2), Yann Collet [ctb, cph] (Yann Collet is the author of the bundled xxHash code)
Maintainer: Travers Ching <traversc@gmail.com>

Diff between stringfish versions 0.14.2 dated 2020-09-05 and 0.15.0 dated 2021-02-24

 ChangeLog                  |    4 
 DESCRIPTION                |   12 
 MD5                        |   33 
 R/RcppExports.R            |    4 
 README.md                  |    8 
 build/vignette.rds         |binary
 configure                  |   10 
 configure.ac               |   10 
 inst/doc/vignette.R        |    2 
 inst/doc/vignette.html     |  148 -
 inst/doc/vignette.rmd      |    2 
 inst/include/sf_internal.h |   51 
 src/RcppExports.cpp        |    9 
 src/sf_altrep.h            |   10 
 src/sf_disabled.h          |only
 src/sf_functions.cpp       |  192 -
 src/xxhash/xxhash.h        | 6083 ++++++++++++++++++++++++++++++++-------------
 vignettes/vignette.rmd     |    2 
 18 files changed, 4684 insertions(+), 1896 deletions(-)

More information about stringfish at CRAN
Permanent link

Package rBDAT updated to version 0.9.7 with previous version 0.9.6 dated 2021-02-18

Title: Implementation of BDAT Tree Taper Fortran Functions
Description: Implementing the BDAT tree taper Fortran routines, which were developed for the German National Forest Inventory (NFI), to calculate diameters, volume, assortments, double bark thickness and biomass for different tree species based on tree characteristics and sorting information. See Kublin (2003) <doi:10.1046/j.1439-0337.2003.00183.x> for details.
Author: Christian Vonderach [aut, cre], Edgar Kublin [aut], Bernhard Bösch [aut], Gerald Kändler [aut], Dominik Cullmann [ctb]
Maintainer: Christian Vonderach <christian.vonderach@forst.bwl.de>

Diff between rBDAT versions 0.9.6 dated 2021-02-18 and 0.9.7 dated 2021-02-24

 DESCRIPTION         |    6 +++---
 MD5                 |   12 ++++++------
 NEWS.md             |   19 ++++++++++++++++++-
 inst/NEWS.rd        |   25 ++++++++++++++++++++++++-
 inst/doc/rbdat.html |    2 +-
 src/Koeff.f         |   12 ++++++++----
 src/rBDAT_init.c    |   48 ++++++++++++++++++++++++------------------------
 7 files changed, 84 insertions(+), 40 deletions(-)

More information about rBDAT at CRAN
Permanent link

Package pxweb updated to version 0.10.4 with previous version 0.9.1 dated 2019-01-07

Title: R Interface to PXWEB APIs
Description: Generic interface for the PX-Web/PC-Axis API. The PX-Web/PC-Axis API is used by organizations such as Statistics Sweden and Statistics Finland to disseminate data. The R package can interact with all PX-Web/PC-Axis APIs to fetch information about the data hierarchy, extract metadata and extract and parse statistics to R data.frame format. PX-Web is a solution to disseminate PC-Axis data files in dynamic tables on the web. Since 2013 PX-Web contains an API to disseminate PC-Axis files.
Author: Mans Magnusson [aut, cre], Markus Kainu [aut], Janne Huovari [aut], Leo Lahti [aut] (<https://orcid.org/0000-0001-5537-637X>), Jan Bruusgaard [ctb], Øyvind Langsrud [ctb], Love Hansson [ctb], Eydun Nielsen [ctb], Bo Werth [ctb], Thomas Runarsson [ctb], Torbjörn Lindquist [ctb], Palmar Thorsteinsson [ctb], Pyry Kantanen [ctb]
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>

Diff between pxweb versions 0.9.1 dated 2019-01-07 and 0.10.4 dated 2021-02-24

 pxweb-0.10.4/pxweb/DESCRIPTION                                      |   20 
 pxweb-0.10.4/pxweb/LICENSE                                          |    2 
 pxweb-0.10.4/pxweb/MD5                                              |  181 +--
 pxweb-0.10.4/pxweb/NAMESPACE                                        |   10 
 pxweb-0.10.4/pxweb/NEWS.md                                          |    9 
 pxweb-0.10.4/pxweb/R/defunct_functions.R                            |only
 pxweb-0.10.4/pxweb/R/onAttach.R                                     |    2 
 pxweb-0.10.4/pxweb/R/pxweb-package.R                                |    4 
 pxweb-0.10.4/pxweb/R/pxweb.R                                        |    5 
 pxweb-0.10.4/pxweb/R/pxweb_add_config.R                             |    2 
 pxweb-0.10.4/pxweb/R/pxweb_as_data_frame.R                          |   16 
 pxweb-0.10.4/pxweb/R/pxweb_cite.R                                   |    2 
 pxweb-0.10.4/pxweb/R/pxweb_data_comments.R                          |    3 
 pxweb-0.10.4/pxweb/R/pxweb_get.R                                    |   20 
 pxweb-0.10.4/pxweb/R/pxweb_interactive.R                            |   49 
 pxweb-0.10.4/pxweb/R/pxweb_levels.R                                 |   20 
 pxweb-0.10.4/pxweb/R/pxweb_metadata.R                               |   14 
 pxweb-0.10.4/pxweb/R/pxweb_query.R                                  |   11 
 pxweb-0.10.4/pxweb/R/pxweb_split_query.R                            |   34 
 pxweb-0.10.4/pxweb/R/pxweb_test_api_endpoint.R                      |    2 
 pxweb-0.10.4/pxweb/R/utils_tests.R                                  |only
 pxweb-0.10.4/pxweb/build/vignette.rds                               |binary
 pxweb-0.10.4/pxweb/inst/CITATION                                    |    4 
 pxweb-0.10.4/pxweb/inst/doc/pxweb.R                                 |   56 -
 pxweb-0.10.4/pxweb/inst/doc/pxweb.Rmd                               |   23 
 pxweb-0.10.4/pxweb/inst/doc/pxweb.html                              |  545 +++++++---
 pxweb-0.10.4/pxweb/inst/extdata/api.json                            |  132 +-
 pxweb-0.10.4/pxweb/inst/extras/build.cran.sh                        |   10 
 pxweb-0.10.4/pxweb/inst/extras/cheatsheet_pxweb.pptx                |only
 pxweb-0.10.4/pxweb/man/api_catalogue.Rd                             |  127 ++
 pxweb-0.10.4/pxweb/man/assert_query_can_be_split_to_batches.Rd      |only
 pxweb-0.10.4/pxweb/man/http_was_redirected.Rd                       |    2 
 pxweb-0.10.4/pxweb/man/pxweb-package.Rd                             |    4 
 pxweb-0.10.4/pxweb/man/pxweb.Rd                                     |    5 
 pxweb-0.10.4/pxweb/man/pxweb_advanced_get.Rd                        |   10 
 pxweb-0.10.4/pxweb/man/pxweb_api_catalogue_entry.Rd                 |    2 
 pxweb-0.10.4/pxweb/man/pxweb_api_name.Rd                            |   23 
 pxweb-0.10.4/pxweb/man/pxweb_as_data_frame.Rd                       |  108 +
 pxweb-0.10.4/pxweb/man/pxweb_data_comments.Rd                       |    3 
 pxweb-0.10.4/pxweb/man/pxweb_explorer.Rd                            |   17 
 pxweb-0.10.4/pxweb/man/pxweb_get.Rd                                 |    3 
 pxweb-0.10.4/pxweb/man/pxweb_get_data.Rd                            |   11 
 pxweb-0.10.4/pxweb/man/pxweb_interactive.Rd                         |   28 
 pxweb-0.10.4/pxweb/man/pxweb_metadata_time.Rd                       |only
 pxweb-0.10.4/pxweb/man/pxweb_query_dim_splittable.Rd                |    5 
 pxweb-0.10.4/pxweb/man/pxweb_test_api.Rd                            |   11 
 pxweb-0.10.4/pxweb/man/pxweb_validate_query_with_metadata.Rd        |    2 
 pxweb-0.10.4/pxweb/tests/testthat/log_pxweb_api_http_calls.txt      |only
 pxweb-0.10.4/pxweb/tests/testthat/test-README.R                     |only
 pxweb-0.10.4/pxweb/tests/testthat/test-defunct.R                    |only
 pxweb-0.10.4/pxweb/tests/testthat/test-pxweb_api_paths.R            |only
 pxweb-0.10.4/pxweb/tests/testthat/test-pxweb_constructor.R          |    2 
 pxweb-0.10.4/pxweb/tests/testthat/test-pxweb_get.R                  |  111 +-
 pxweb-0.10.4/pxweb/tests/testthat/test-pxweb_query.R                |   27 
 pxweb-0.10.4/pxweb/tests/testthat/test-pxweb_test_api.R             |    8 
 pxweb-0.10.4/pxweb/tests/testthat/test_data                         |only
 pxweb-0.10.4/pxweb/vignettes/pxweb.Rmd                              |   23 
 pxweb-0.9.1/pxweb/R/deprecated_ApiData.R                            |only
 pxweb-0.9.1/pxweb/R/deprecated_api_catalogue.R                      |only
 pxweb-0.9.1/pxweb/R/deprecated_api_parameters.R                     |only
 pxweb-0.9.1/pxweb/R/deprecated_api_timer.R                          |only
 pxweb-0.9.1/pxweb/R/deprecated_base_url.R                           |only
 pxweb-0.9.1/pxweb/R/deprecated_constants.R                          |only
 pxweb-0.9.1/pxweb/R/deprecated_get_pxweb_data.R                     |only
 pxweb-0.9.1/pxweb/R/deprecated_get_pxweb_data_internal.R            |only
 pxweb-0.9.1/pxweb/R/deprecated_get_pxweb_dims.R                     |only
 pxweb-0.9.1/pxweb/R/deprecated_get_pxweb_levels.R                   |only
 pxweb-0.9.1/pxweb/R/deprecated_get_pxweb_metadata.R                 |only
 pxweb-0.9.1/pxweb/R/deprecated_interactive_pxweb.R                  |only
 pxweb-0.9.1/pxweb/R/deprecated_interactive_pxweb_internal.R         |only
 pxweb-0.9.1/pxweb/R/deprecated_pxweb_api_class.R                    |only
 pxweb-0.9.1/pxweb/R/deprecated_test_pxweb_api.R                     |only
 pxweb-0.9.1/pxweb/R/deprecated_test_pxweb_api_internal.R            |only
 pxweb-0.9.1/pxweb/R/deprecated_todo.R                               |only
 pxweb-0.9.1/pxweb/R/deprecated_utils_internal.R                     |only
 pxweb-0.9.1/pxweb/man/ApiData.Rd                                    |only
 pxweb-0.9.1/pxweb/man/MakeUrl.Rd                                    |only
 pxweb-0.9.1/pxweb/man/Number.Rd                                     |only
 pxweb-0.9.1/pxweb/man/api_parameters.Rd                             |only
 pxweb-0.9.1/pxweb/man/api_timer.Rd                                  |only
 pxweb-0.9.1/pxweb/man/base_url.Rd                                   |only
 pxweb-0.9.1/pxweb/man/buildPath.Rd                                  |only
 pxweb-0.9.1/pxweb/man/calc_dim_type.Rd                              |only
 pxweb-0.9.1/pxweb/man/calculate_data_dim.Rd                         |only
 pxweb-0.9.1/pxweb/man/checkForLevels.Rd                             |only
 pxweb-0.9.1/pxweb/man/check_new_pxweb_apis.Rd                       |only
 pxweb-0.9.1/pxweb/man/choose_pxweb_api.Rd                           |only
 pxweb-0.9.1/pxweb/man/choose_pxweb_database_url.Rd                  |only
 pxweb-0.9.1/pxweb/man/clean_pxweb.Rd                                |only
 pxweb-0.9.1/pxweb/man/create_batch_list.Rd                          |only
 pxweb-0.9.1/pxweb/man/deparseLevels.Rd                              |only
 pxweb-0.9.1/pxweb/man/download_pxweb.Rd                             |only
 pxweb-0.9.1/pxweb/man/findData.input.Rd                             |only
 pxweb-0.9.1/pxweb/man/getContent.Rd                                 |only
 pxweb-0.9.1/pxweb/man/get_api_file_path.Rd                          |only
 pxweb-0.9.1/pxweb/man/get_api_index.Rd                              |only
 pxweb-0.9.1/pxweb/man/get_api_list.Rd                               |only
 pxweb-0.9.1/pxweb/man/get_api_list_remote.Rd                        |only
 pxweb-0.9.1/pxweb/man/get_dim_size.Rd                               |only
 pxweb-0.9.1/pxweb/man/get_github_api_urls.Rd                        |only
 pxweb-0.9.1/pxweb/man/get_pxweb_data.Rd                             |only
 pxweb-0.9.1/pxweb/man/get_pxweb_dims.Rd                             |only
 pxweb-0.9.1/pxweb/man/get_pxweb_levels.Rd                           |only
 pxweb-0.9.1/pxweb/man/get_pxweb_metadata.Rd                         |only
 pxweb-0.9.1/pxweb/man/interactive_pxweb.Rd                          |only
 pxweb-0.9.1/pxweb/man/print.api_parameters.Rd                       |only
 pxweb-0.9.1/pxweb/man/pxweb_api-class.Rd                            |only
 pxweb-0.9.1/pxweb/man/pxweb_levels_remove_headers.Rd                |only
 pxweb-0.9.1/pxweb/man/reorder_and_check_dims.Rd                     |only
 pxweb-0.9.1/pxweb/man/temp_api_file_path.Rd                         |only
 pxweb-0.9.1/pxweb/man/temp_api_folder_path.Rd                       |only
 pxweb-0.9.1/pxweb/man/test_pxweb_api.Rd                             |only
 pxweb-0.9.1/pxweb/man/test_pxweb_api_get_data.Rd                    |only
 pxweb-0.9.1/pxweb/man/test_pxweb_api_get_node_metadata.Rd           |only
 pxweb-0.9.1/pxweb/man/test_pxweb_api_get_nodes.Rd                   |only
 pxweb-0.9.1/pxweb/man/text_to_url.Rd                                |only
 pxweb-0.9.1/pxweb/man/update_pxweb_apis.Rd                          |only
 pxweb-0.9.1/pxweb/man/write_api_list.Rd                             |only
 pxweb-0.9.1/pxweb/tests/testthat/test-PxWebApiData_ApiData.R        |only
 pxweb-0.9.1/pxweb/tests/testthat/test-api_catalogue.R               |only
 pxweb-0.9.1/pxweb/tests/testthat/test-api_parameters.R              |only
 pxweb-0.9.1/pxweb/tests/testthat/test-apis_in_catalogue.R           |only
 pxweb-0.9.1/pxweb/tests/testthat/test-base_url.R                    |only
 pxweb-0.9.1/pxweb/tests/testthat/test-big_query.R                   |only
 pxweb-0.9.1/pxweb/tests/testthat/test-clean_pxweb.R                 |only
 pxweb-0.9.1/pxweb/tests/testthat/test-get_pxweb_data.R              |only
 pxweb-0.9.1/pxweb/tests/testthat/test-get_pxweb_dims.R              |only
 pxweb-0.9.1/pxweb/tests/testthat/test-get_pxweb_levels.R            |only
 pxweb-0.9.1/pxweb/tests/testthat/test-get_pxweb_metadata.R          |only
 pxweb-0.9.1/pxweb/tests/testthat/test-interactive_pxweb.R           |only
 pxweb-0.9.1/pxweb/tests/testthat/test-multiple_queries_data.R       |only
 pxweb-0.9.1/pxweb/tests/testthat/test-pxweb_api_class.R             |only
 pxweb-0.9.1/pxweb/tests/testthat/test-pxweb_examples.R              |only
 pxweb-0.9.1/pxweb/tests/testthat/test-test_pxweb_api.R              |only
 pxweb-0.9.1/pxweb/tests/testthat/test-utils_internal.R              |only
 pxweb-0.9.1/pxweb/tests/testthat/test-x_deprecated_get_pxweb_data.R |only
 136 files changed, 1135 insertions(+), 573 deletions(-)

More information about pxweb at CRAN
Permanent link

Package mlrCPO updated to version 0.3.7-2 with previous version 0.3.7-1 dated 2021-01-11

Title: Composable Preprocessing Operators and Pipelines for Machine Learning
Description: Toolset that enriches 'mlr' with a diverse set of preprocessing operators. Composable Preprocessing Operators ("CPO"s) are first-class R objects that can be applied to data.frames and 'mlr' "Task"s to modify data, can be attached to 'mlr' "Learner"s to add preprocessing to machine learning algorithms, and can be composed to form preprocessing pipelines.
Author: Martin Binder [aut, cre], Bernd Bischl [ctb], Michel Lang [ctb], Lars Kotthoff [ctb]
Maintainer: Martin Binder <developer.mb706@doublecaret.com>

Diff between mlrCPO versions 0.3.7-1 dated 2021-01-11 and 0.3.7-2 dated 2021-02-24

 DESCRIPTION                             |    6 +--
 MD5                                     |   24 ++++++-------
 NEWS                                    |    3 +
 build/vignette.rds                      |binary
 inst/doc/a_1_getting_started.html       |   53 ++++++------------------------
 inst/doc/a_2_mlrCPO_core.html           |   53 ++++++------------------------
 inst/doc/a_3_all_CPOs.html              |   53 ++++++------------------------
 inst/doc/a_4_custom_CPOs.html           |   55 ++++++--------------------------
 inst/doc/z_1_getting_started_terse.html |   53 ++++++------------------------
 inst/doc/z_2_mlrCPO_core_terse.html     |   53 ++++++------------------------
 inst/doc/z_3_all_CPOs_terse.html        |   53 ++++++------------------------
 inst/doc/z_4_custom_CPOs_terse.html     |   53 ++++++------------------------
 tests/testthat/test_cpo_filter.R        |    7 ++++
 13 files changed, 114 insertions(+), 352 deletions(-)

More information about mlrCPO at CRAN
Permanent link

Package LWFBrook90R updated to version 0.4.4 with previous version 0.4.3 dated 2021-02-09

Title: Simulate Evapotranspiration and Soil Moisture with the SVAT Model LWF-Brook90
Description: Provides a flexible and easy-to use interface for the soil vegetation atmosphere transport (SVAT) model LWF-BROOK90, written in Fortran. The model simulates daily transpiration, interception, soil and snow evaporation, streamflow and soil water fluxes through a soil profile covered with vegetation, as described in Hammel & Kennel (2001, ISBN:978-3-933506-16-0) and Federer et al. (2003) <doi:10.1175/1525-7541(2003)004%3C1276:SOAETS%3E2.0.CO;2>. A set of high-level functions for model set up, execution and parallelization provides easy access to plot-level SVAT simulations, as well as multi-run and large-scale applications.
Author: Paul Schmidt-Walter [aut, cre] (<https://orcid.org/0000-0003-2699-0893>), Volodymyr Trotsiuk [aut] (<https://orcid.org/0000-0002-8363-656X>), Klaus Hammel [aut], Martin Kennel [aut], Anthony Federer [aut], Robert Nuske [ctb] (<https://orcid.org/0000-0001-9773-2061>), Bavarian State Institute of Forestry (LWF) [cph, fnd], Northwest German Forest Research Institute (NW-FVA) [cph, fnd]
Maintainer: Paul Schmidt-Walter <paulsw@posteo.de>

Diff between LWFBrook90R versions 0.4.3 dated 2021-02-09 and 0.4.4 dated 2021-02-24

 DESCRIPTION                              |   18 +++++-----
 MD5                                      |   24 ++++++-------
 NEWS.md                                  |    4 ++
 R/r_lwfbrook90.R                         |    4 +-
 README.md                                |   24 +++++++------
 build/vignette.rds                       |binary
 man/figures/README-unnamed-chunk-5-1.png |binary
 src/PFILE.h                              |    2 -
 src/PREINCHK.h                           |    4 +-
 src/SWCHEK.h                             |    4 +-
 src/VARDCL.h                             |    2 -
 src/md_brook90.f95                       |   54 ++++++++++++++++---------------
 src/skeleton.c                           |    4 +-
 13 files changed, 77 insertions(+), 67 deletions(-)

More information about LWFBrook90R at CRAN
Permanent link

Package localScore updated to version 1.0.6 with previous version 1.0.4 dated 2021-02-23

Title: Package for Sequence Analysis by Local Score
Description: Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.archives-ouvertes.fr/hal-00714174> ; S. Karlin and S. Altschul (1990) <https://www.pnas.org/content/87/6/2264> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.archives-ouvertes.fr/hal-00937529v1> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).
Author: Sebastian Simon [aut], David Robelin [aut, cre], Sabine Mercier [aut], Sebastien Dejean [aut], The authors of Eigen the library for the included version of Eigen [cph]
Maintainer: David Robelin <david.robelin@inrae.fr>

Diff between localScore versions 1.0.4 dated 2021-02-23 and 1.0.6 dated 2021-02-24

 localScore-1.0.4/localScore/inst/doc/localScorePackageDocumentation.pdf  |only
 localScore-1.0.6/localScore/DESCRIPTION                                  |    8 +++---
 localScore-1.0.6/localScore/MD5                                          |   12 +++++-----
 localScore-1.0.6/localScore/build/vignette.rds                           |binary
 localScore-1.0.6/localScore/inst/doc/localScorePackageDocumentation.html |only
 localScore-1.0.6/localScore/src/function_wrapper.cpp                     |    3 --
 localScore-1.0.6/localScore/src/pValueMethods.cpp                        |   12 +++++-----
 localScore-1.0.6/localScore/src/testsCpp/tests.cpp                       |    2 -
 8 files changed, 18 insertions(+), 19 deletions(-)

More information about localScore at CRAN
Permanent link

Package activity updated to version 1.3.1 with previous version 1.3 dated 2019-09-09

Title: Animal Activity Statistics
Description: Provides functions to express clock time data relative to anchor points (typically solar); fit kernel density functions to animal activity time data; plot activity distributions; quantify overall levels of activity; statistically compare activity metrics through bootstrapping; evaluate variation in linear variables with time (or other circular variables).
Author: Marcus Rowcliffe
Maintainer: Marcus Rowcliffe <marcus.rowcliffe@ioz.ac.uk>

Diff between activity versions 1.3 dated 2019-09-09 and 1.3.1 dated 2021-02-24

 DESCRIPTION            |    8 ++++----
 MD5                    |   20 ++++++++++----------
 R/activity_code.r      |   16 +++++++++-------
 man/BCIspeed.Rd        |    4 +++-
 man/BCItime.Rd         |    4 +++-
 man/activity.Rd        |    1 -
 man/fitact.Rd          |   28 +++++++++++++++++++---------
 man/gettime.Rd         |    7 +++++--
 man/plot.actmod.Rd     |   18 +++++++++++++-----
 man/plot.lincircmod.Rd |   12 ++++++++++--
 man/transtime.Rd       |    8 ++++++--
 11 files changed, 82 insertions(+), 44 deletions(-)

More information about activity at CRAN
Permanent link

New package bcv with initial version 1.0.1.2
Package: bcv
Version: 1.0.1.2
Date: 2021-02-06
Title: Cross-Validation for the SVD (Bi-Cross-Validation)
Author: Patrick O. Perry
Maintainer: Seyed Morteza Najibi <mor.najibi@gmail.com>
Description: Methods for choosing the rank of an SVD approximation via cross validation. The package provides both Gabriel-style "block" holdouts and Wold-style "speckled" holdouts. It also includes an implementation of the SVDImpute algorithm. For more information about Bi-cross-validation, see Owen & Perry's 2009 AoAS article (at <arXiv:0908.2062>) and Perry's 2009 PhD thesis (at <arXiv:0909.3052>).
License: BSD_3_clause + file LICENSE
Encoding: UTF-8
NeedsCompilation: yes
RoxygenNote: 7.1.0
Packaged: 2021-02-24 10:23:33 UTC; morteza
Repository: CRAN
Date/Publication: 2021-02-24 22:40:26 UTC

More information about bcv at CRAN
Permanent link

Package LTRCforests updated to version 0.5.5 with previous version 0.5.2 dated 2020-10-29

Title: Ensemble Methods for Survival Data with Time-Varying Covariates
Description: Implements the conditional inference forest and relative risk forest algorithm to modeling left-truncated right-censored data with time-invariant covariates, and (left-truncated) right-censored survival data with time-varying covariates. It also provides functions to tune the parameters and evaluate the model fit. See Yao et al. (2020) <arXiv:2006.00567>.
Author: Weichi Yao [aut, cre], Halina Frydman [aut], Denis Larocque [aut], Jeffrey S. Simonoff [aut]
Maintainer: Weichi Yao <wy635@stern.nyu.edu>

Diff between LTRCforests versions 0.5.2 dated 2020-10-29 and 0.5.5 dated 2021-02-24

 DESCRIPTION                |   10 +-
 MD5                        |   16 +--
 R/LTRCforests-package.R    |    4 
 R/ltrccif.R                |    2 
 R/ltrcrrf.R                |    2 
 R/predictProb.R            |  193 +++++++++++++++++++++++----------------------
 man/LTRCforests-package.Rd |    4 
 man/ltrccif.Rd             |    2 
 man/ltrcrrf.Rd             |    2 
 9 files changed, 123 insertions(+), 112 deletions(-)

More information about LTRCforests at CRAN
Permanent link

Package renv updated to version 0.13.0 with previous version 0.12.5 dated 2021-01-09

Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create and manage project-local R libraries, save the state of these libraries to a 'lockfile', and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre], RStudio [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>

Diff between renv versions 0.12.5 dated 2021-01-09 and 0.13.0 dated 2021-02-24

 renv-0.12.5/renv/R/find-package.R                         |only
 renv-0.13.0/renv/DESCRIPTION                              |    6 
 renv-0.13.0/renv/MD5                                      |  207 ++++++-----
 renv-0.13.0/renv/NAMESPACE                                |    3 
 renv-0.13.0/renv/NEWS.md                                  |   96 +++++
 renv-0.13.0/renv/R/R.R                                    |   29 +
 renv-0.13.0/renv/R/actions.R                              |    9 
 renv-0.13.0/renv/R/activate.R                             |   23 +
 renv-0.13.0/renv/R/available-packages.R                   |    8 
 renv-0.13.0/renv/R/bootstrap.R                            |  244 ++++++++++++-
 renv-0.13.0/renv/R/cache.R                                |   22 +
 renv-0.13.0/renv/R/ci.R                                   |    2 
 renv-0.13.0/renv/R/cli.R                                  |   16 
 renv-0.13.0/renv/R/config-defaults.R                      |    9 
 renv-0.13.0/renv/R/consent.R                              |    1 
 renv-0.13.0/renv/R/dependencies.R                         |   96 ++++-
 renv-0.13.0/renv/R/diagnostics.R                          |   21 -
 renv-0.13.0/renv/R/download.R                             |  170 +++++++--
 renv-0.13.0/renv/R/embed.R                                |  158 ++++++--
 renv-0.13.0/renv/R/files.R                                |   14 
 renv-0.13.0/renv/R/history.R                              |    7 
 renv-0.13.0/renv/R/hydrate.R                              |   75 +++-
 renv-0.13.0/renv/R/imbue.R                                |    8 
 renv-0.13.0/renv/R/infrastructure.R                       |   30 +
 renv-0.13.0/renv/R/init.R                                 |   26 +
 renv-0.13.0/renv/R/install.R                              |   60 ++-
 renv-0.13.0/renv/R/json.R                                 |   25 +
 renv-0.13.0/renv/R/libpaths.R                             |    4 
 renv-0.13.0/renv/R/load.R                                 |   56 ++-
 renv-0.13.0/renv/R/local-packages.R                       |    7 
 renv-0.13.0/renv/R/lockfile-api.R                         |   17 
 renv-0.13.0/renv/R/lockfile.R                             |   21 +
 renv-0.13.0/renv/R/methods.R                              |only
 renv-0.13.0/renv/R/migrate.R                              |    2 
 renv-0.13.0/renv/R/package.R                              |   42 ++
 renv-0.13.0/renv/R/parallel.R                             |    2 
 renv-0.13.0/renv/R/patch.R                                |   22 +
 renv-0.13.0/renv/R/path.R                                 |   68 +++
 renv-0.13.0/renv/R/paths.R                                |   55 ++-
 renv-0.13.0/renv/R/platform.R                             |    8 
 renv-0.13.0/renv/R/profile.R                              |only
 renv-0.13.0/renv/R/python.R                               |    3 
 renv-0.13.0/renv/R/rebuild.R                              |    9 
 renv-0.13.0/renv/R/record.R                               |    2 
 renv-0.13.0/renv/R/records.R                              |   10 
 renv-0.13.0/renv/R/remotes.R                              |   42 +-
 renv-0.13.0/renv/R/renvignore.R                           |   51 +-
 renv-0.13.0/renv/R/retrieve.R                             |   60 ++-
 renv-0.13.0/renv/R/roxygen.R                              |    4 
 renv-0.13.0/renv/R/settings.R                             |    2 
 renv-0.13.0/renv/R/snapshot-auto.R                        |    6 
 renv-0.13.0/renv/R/snapshot.R                             |   50 ++
 renv-0.13.0/renv/R/status.R                               |   15 
 renv-0.13.0/renv/R/tests.R                                |   41 ++
 renv-0.13.0/renv/R/update.R                               |  119 ++++++
 renv-0.13.0/renv/R/use.R                                  |only
 renv-0.13.0/renv/R/utils.R                                |   21 +
 renv-0.13.0/renv/R/zzz.R                                  |    2 
 renv-0.13.0/renv/README.md                                |    2 
 renv-0.13.0/renv/build/vignette.rds                       |binary
 renv-0.13.0/renv/inst/config.yml                          |    9 
 renv-0.13.0/renv/inst/doc/docker.html                     |   13 
 renv-0.13.0/renv/inst/doc/faq.Rmd                         |   14 
 renv-0.13.0/renv/inst/doc/faq.html                        |   15 
 renv-0.13.0/renv/inst/doc/local-sources.html              |    9 
 renv-0.13.0/renv/inst/doc/lockfile.html                   |    2 
 renv-0.13.0/renv/inst/doc/mran.html                       |    9 
 renv-0.13.0/renv/inst/doc/profiles.R                      |only
 renv-0.13.0/renv/inst/doc/profiles.Rmd                    |only
 renv-0.13.0/renv/inst/doc/profiles.html                   |only
 renv-0.13.0/renv/inst/doc/renv.Rmd                        |   55 ++-
 renv-0.13.0/renv/inst/doc/renv.html                       |   29 +
 renv-0.13.0/renv/inst/doc/use.R                           |only
 renv-0.13.0/renv/inst/doc/use.Rmd                         |only
 renv-0.13.0/renv/inst/doc/use.html                        |only
 renv-0.13.0/renv/inst/resources/activate.R                |  249 ++++++++++++--
 renv-0.13.0/renv/man/activate.Rd                          |    6 
 renv-0.13.0/renv/man/config.Rd                            |    2 
 renv-0.13.0/renv/man/embed.Rd                             |   18 -
 renv-0.13.0/renv/man/hydrate.Rd                           |   23 +
 renv-0.13.0/renv/man/init.Rd                              |    5 
 renv-0.13.0/renv/man/paths.Rd                             |   10 
 renv-0.13.0/renv/man/record.Rd                            |    2 
 renv-0.13.0/renv/man/snapshot.Rd                          |   18 -
 renv-0.13.0/renv/man/use.Rd                               |only
 renv-0.13.0/renv/tests/testthat/resources/box.R           |only
 renv-0.13.0/renv/tests/testthat/test-available-packages.R |   20 +
 renv-0.13.0/renv/tests/testthat/test-cache.R              |   66 +++
 renv-0.13.0/renv/tests/testthat/test-dependencies.R       |   20 +
 renv-0.13.0/renv/tests/testthat/test-download.R           |   36 --
 renv-0.13.0/renv/tests/testthat/test-hydrate.R            |   29 +
 renv-0.13.0/renv/tests/testthat/test-init.R               |   38 ++
 renv-0.13.0/renv/tests/testthat/test-install.R            |   11 
 renv-0.13.0/renv/tests/testthat/test-json.R               |   12 
 renv-0.13.0/renv/tests/testthat/test-load.R               |    2 
 renv-0.13.0/renv/tests/testthat/test-mran.R               |   17 
 renv-0.13.0/renv/tests/testthat/test-packages.R           |    5 
 renv-0.13.0/renv/tests/testthat/test-paths.R              |   29 +
 renv-0.13.0/renv/tests/testthat/test-platform.R           |only
 renv-0.13.0/renv/tests/testthat/test-profile.R            |only
 renv-0.13.0/renv/tests/testthat/test-rebuild.R            |   16 
 renv-0.13.0/renv/tests/testthat/test-remotes.R            |   16 
 renv-0.13.0/renv/tests/testthat/test-renvignore.R         |   22 -
 renv-0.13.0/renv/tests/testthat/test-restore.R            |   19 +
 renv-0.13.0/renv/tests/testthat/test-retrieve.R           |    4 
 renv-0.13.0/renv/tests/testthat/test-status.R             |   11 
 renv-0.13.0/renv/tests/testthat/test-upgrade.R            |    2 
 renv-0.13.0/renv/tests/testthat/test-use.R                |only
 renv-0.13.0/renv/tests/testthat/test-utils.R              |   23 +
 renv-0.13.0/renv/vignettes/faq.Rmd                        |   14 
 renv-0.13.0/renv/vignettes/profiles.Rmd                   |only
 renv-0.13.0/renv/vignettes/renv.Rmd                       |   55 ++-
 renv-0.13.0/renv/vignettes/use.Rmd                        |only
 113 files changed, 2502 insertions(+), 561 deletions(-)

More information about renv at CRAN
Permanent link

Package vinereg updated to version 0.7.3 with previous version 0.7.2 dated 2020-11-17

Title: D-Vine Quantile Regression
Description: Implements D-vine quantile regression models with parametric or nonparametric pair-copulas. See Kraus and Czado (2017) <doi:10.1016/j.csda.2016.12.009> and Schallhorn et al. (2017) <arXiv:1705.08310>.
Author: Thomas Nagler [aut, cre], Dani Kraus [ctb]
Maintainer: Thomas Nagler <mail@tnagler.com>

Diff between vinereg versions 0.7.2 dated 2020-11-17 and 0.7.3 dated 2021-02-24

 DESCRIPTION                   |   10 
 MD5                           |   32 -
 NEWS.md                       |   10 
 R/predict.vinereg.R           |    3 
 R/tools.R                     |    5 
 R/vinereg.R                   |    5 
 build/vignette.rds            |binary
 inst/doc/abalone-example.R    |   11 
 inst/doc/abalone-example.Rmd  |   25 -
 inst/doc/abalone-example.html |  766 ++++++++++++++++++-----------------------
 inst/doc/bike-rental.R        |   10 
 inst/doc/bike-rental.Rmd      |   11 
 inst/doc/bike-rental.html     |  770 ++++++++++++++++--------------------------
 src/vinereg.cpp               |   70 +--
 tests/testthat.R              |    3 
 vignettes/abalone-example.Rmd |   25 -
 vignettes/bike-rental.Rmd     |   11 
 17 files changed, 770 insertions(+), 997 deletions(-)

More information about vinereg at CRAN
Permanent link

Package survidm updated to version 1.3.1 with previous version 1.3.0 dated 2021-02-16

Title: Inference and Prediction in an Illness-Death Model
Description: Newly developed methods for the estimation of several probabilities in an illness-death model. The package can be used to obtain nonparametric and semiparametric estimates for: transition probabilities, occupation probabilities, cumulative incidence function and the sojourn time distributions. Additionally, it is possible to fit proportional hazards regression models in each transition of the Illness-Death Model. Several auxiliary functions are also provided which can be used for marginal estimation of the survival functions.
Author: Luis Meira-Machado, Marta Sestelo and Gustavo Soutinho
Maintainer: Marta Sestelo <sestelo@uvigo.es>

Diff between survidm versions 1.3.0 dated 2021-02-16 and 1.3.1 dated 2021-02-24

 DESCRIPTION             |    8 ++++----
 MD5                     |   10 +++++-----
 NAMESPACE               |    2 +-
 R/autoplot.survIDM.R    |   26 +++++++++++++-------------
 build/partial.rdb       |binary
 man/autoplot.survIDM.Rd |    2 +-
 6 files changed, 24 insertions(+), 24 deletions(-)

More information about survidm at CRAN
Permanent link

Package SSDforR updated to version 1.5.21 with previous version 1.5.20 dated 2020-11-15

Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre], Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>

Diff between SSDforR versions 1.5.20 dated 2020-11-15 and 1.5.21 dated 2021-02-24

 DESCRIPTION   |    8 ++++----
 MD5           |    4 ++--
 R/ABdescrip.R |    7 +++++--
 3 files changed, 11 insertions(+), 8 deletions(-)

More information about SSDforR at CRAN
Permanent link

Package medrxivr updated to version 0.0.5 with previous version 0.0.4 dated 2020-12-11

Title: Access and Search MedRxiv and BioRxiv Preprint Data
Description: An increasingly important source of health-related bibliographic content are preprints - preliminary versions of research articles that have yet to undergo peer review. The two preprint repositories most relevant to health-related sciences are medRxiv <https://www.medrxiv.org/> and bioRxiv <https://www.biorxiv.org/>, both of which are operated by the Cold Spring Harbor Laboratory. 'medrxivr' provides programmatic access to the 'Cold Spring Harbour Laboratory (CSHL)' API <https://api.biorxiv.org/>, allowing users to easily download medRxiv and bioRxiv preprint metadata (e.g. title, abstract, publication date, author list, etc) into R. 'medrxivr' also provides functions to search the downloaded preprint records using regular expressions and Boolean logic, as well as helper functions that allow users to export their search results to a .BIB file for easy import to a reference manager and to download the full-text PDFs of preprints matching their search criteria.
Author: Luke McGuinness [aut, cre] (<https://orcid.org/0000-0001-8730-9761>), Lena Schmidt [aut] (<https://orcid.org/0000-0003-0709-8226>), Tuija Sonkkila [rev], Najko Jahn [rev]
Maintainer: Luke McGuinness <luke.mcguinness@bristol.ac.uk>

Diff between medrxivr versions 0.0.4 dated 2020-12-11 and 0.0.5 dated 2021-02-24

 medrxivr-0.0.4/medrxivr/inst/paper.html                  |only
 medrxivr-0.0.5/medrxivr/DESCRIPTION                      |    8 
 medrxivr-0.0.5/medrxivr/MD5                              |   52 +-
 medrxivr-0.0.5/medrxivr/NAMESPACE                        |    1 
 medrxivr-0.0.5/medrxivr/NEWS.md                          |   11 
 medrxivr-0.0.5/medrxivr/R/helpers.R                      |   13 
 medrxivr-0.0.5/medrxivr/R/mx_api.R                       |   22 -
 medrxivr-0.0.5/medrxivr/R/mx_search.R                    |  227 ++++++++--
 medrxivr-0.0.5/medrxivr/R/mx_snapshot.R                  |    5 
 medrxivr-0.0.5/medrxivr/R/mx_syntax.R                    |only
 medrxivr-0.0.5/medrxivr/README.md                        |   53 ++
 medrxivr-0.0.5/medrxivr/build/vignette.rds               |binary
 medrxivr-0.0.5/medrxivr/inst/WORDLIST                    |   12 
 medrxivr-0.0.5/medrxivr/inst/doc/medrxivr.html           |  311 ---------------
 medrxivr-0.0.5/medrxivr/inst/paper.bib                   |   56 +-
 medrxivr-0.0.5/medrxivr/man/fix_caps.Rd                  |only
 medrxivr-0.0.5/medrxivr/man/fix_near.Rd                  |only
 medrxivr-0.0.5/medrxivr/man/fix_wildcard.Rd              |only
 medrxivr-0.0.5/medrxivr/man/medrxivr.Rd                  |   26 -
 medrxivr-0.0.5/medrxivr/man/mx_api_content.Rd            |   10 
 medrxivr-0.0.5/medrxivr/man/mx_api_doi.Rd                |    2 
 medrxivr-0.0.5/medrxivr/man/mx_caps.Rd                   |only
 medrxivr-0.0.5/medrxivr/man/mx_info.Rd                   |   40 -
 medrxivr-0.0.5/medrxivr/man/mx_reporter.Rd               |only
 medrxivr-0.0.5/medrxivr/man/mx_search.Rd                 |   23 +
 medrxivr-0.0.5/medrxivr/man/print_full_results.Rd        |only
 medrxivr-0.0.5/medrxivr/man/run_search.Rd                |only
 medrxivr-0.0.5/medrxivr/tests/testthat/test-api.R        |    3 
 medrxivr-0.0.5/medrxivr/tests/testthat/test-crosscheck.R |    1 
 medrxivr-0.0.5/medrxivr/tests/testthat/test-helpers.R    |   11 
 medrxivr-0.0.5/medrxivr/tests/testthat/test-search.R     |   57 ++
 medrxivr-0.0.5/medrxivr/tests/testthat/test-syntax.R     |only
 32 files changed, 473 insertions(+), 471 deletions(-)

More information about medrxivr at CRAN
Permanent link

New package steps with initial version 1.2.0
Package: steps
Type: Package
Title: Spatially- and Temporally-Explicit Population Simulator
Version: 1.2.0
Date: 2021-02-15
Authors@R: c( person("Casey", "Visintin", email = "casey.visintin@unimelb.edu.au", role=c("aut", "cre")), person("Nick", "Golding", email = "nick.golding.research@gmail.com", role = "ctb"), person("Skipton", "Woolley", email = "skip.woolley@csiro.au", role = "ctb"), person("John", "Baumgartner", email = "john.baumgartner@mq.edu.au", role = "ctb") )
Maintainer: Casey Visintin <casey.visintin@unimelb.edu.au>
Description: Software to simulate population change across space and time.
Depends: R (>= 3.4.0)
License: GPL (>= 2)
Imports: Rcpp, raster, future, future.apply, rasterVis, viridisLite, memuse
LinkingTo: Rcpp
RoxygenNote: 7.1.1
Suggests: testthat, fields, knitr, rmarkdown, foreach
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
Packaged: 2021-02-17 02:28:35 UTC; casey
Author: Casey Visintin [aut, cre], Nick Golding [ctb], Skipton Woolley [ctb], John Baumgartner [ctb]
Repository: CRAN
Date/Publication: 2021-02-24 16:50:03 UTC

More information about steps at CRAN
Permanent link

Package shinyML updated to version 1.0.1 with previous version 1.0.0 dated 2020-10-03

Title: Compare Supervised Machine Learning Models Using Shiny App
Description: Implementation of a shiny app to easily compare supervised machine learning model performances. You provide the data and configure each model parameter directly on the shiny app. Different supervised learning algorithms can be tested either on Spark or H2O frameworks to suit your regression and classification tasks. Implementation of available machine learning models on R has been done by Lantz (2013, ISBN:9781782162148).
Author: Jean Bertin
Maintainer: Jean Bertin <jean.bertin@mines-paris.org>

Diff between shinyML versions 1.0.0 dated 2020-10-03 and 1.0.1 dated 2021-02-24

 shinyML-1.0.0/shinyML/build                      |only
 shinyML-1.0.0/shinyML/inst                       |only
 shinyML-1.0.0/shinyML/vignettes                  |only
 shinyML-1.0.1/shinyML/DESCRIPTION                |   16 +--
 shinyML-1.0.1/shinyML/LICENSE.note               |    2 
 shinyML-1.0.1/shinyML/MD5                        |   25 +-----
 shinyML-1.0.1/shinyML/NAMESPACE                  |    1 
 shinyML-1.0.1/shinyML/NEWS.md                    |    8 +
 shinyML-1.0.1/shinyML/R/shinyML_classification.R |   49 ++++++++---
 shinyML-1.0.1/shinyML/R/shinyML_regression.R     |   75 ++++++++++++------
 shinyML-1.0.1/shinyML/README.md                  |   94 ++++++++++-------------
 11 files changed, 156 insertions(+), 114 deletions(-)

More information about shinyML at CRAN
Permanent link

Package quantreg updated to version 5.85 with previous version 5.83 dated 2021-01-22

Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles: Linear and nonlinear parametric and non-parametric (total variation penalized) models for conditional quantiles of a univariate response and several methods for handling censored survival data. Portfolio selection methods based on expected shortfall risk are also now included. See Koenker (2006) <doi:10.1017/CBO9780511754098> and Koenker et al (2017) <doi:10.1201/9781315120256>.
Author: Roger Koenker [cre, aut], Stephen Portnoy [ctb] (Contributions to Censored QR code), Pin Tian Ng [ctb] (Contributions to Sparse QR code), Blaise Melly [ctb] (Contributions to preprocessing code), Achim Zeileis [ctb] (Contributions to dynrq code essentially identical to his dynlm code), Philip Grosjean [ctb] (Contributions to nlrq code), Cleve Moler [ctb] (author of several linpack routines), Yousef Saad [ctb] (author of sparskit2), Victor Chernozhukov [ctb] (contributions to extreme value inference code), Ivan Fernandez-Val [ctb] (contributions to extreme value inference code), Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my everlasting shame -- how could I have been so slow to adopt R!) and for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>

Diff between quantreg versions 5.83 dated 2021-01-22 and 5.85 dated 2021-02-24

 DESCRIPTION        |    9 ++-
 MD5                |   12 ++---
 R/rqss.R           |  120 +++++++++++++++++++++++++----------------------------
 build/vignette.rds |binary
 inst/ChangeLog     |   11 ++++
 man/barro.Rd       |    2 
 man/rq.fit.sfnc.Rd |    6 --
 7 files changed, 82 insertions(+), 78 deletions(-)

More information about quantreg at CRAN
Permanent link

Package Deriv updated to version 4.1.3 with previous version 4.1.2 dated 2020-12-10

Title: Symbolic Differentiation
Description: R-based solution for symbolic differentiation. It admits user-defined function as well as function substitution in arguments of functions to be differentiated. Some symbolic simplification is part of the work.
Author: Andrew Clausen [aut], Serguei Sokol [aut, cre] (<https://orcid.org/0000-0002-5674-3327>), Andreas Rappold [ctb]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>

Diff between Deriv versions 4.1.2 dated 2020-12-10 and 4.1.3 dated 2021-02-24

 DESCRIPTION          |    8 +++----
 MD5                  |   10 ++++-----
 NEWS                 |    6 +++++
 R/Deriv.R            |   56 ++++++++++++++++++++++++++++++---------------------
 man/Deriv-package.Rd |    4 +--
 man/Deriv.Rd         |   11 ++++++----
 6 files changed, 57 insertions(+), 38 deletions(-)

More information about Deriv at CRAN
Permanent link

Package provenance updated to version 3.0 with previous version 2.4 dated 2020-03-19

Title: Statistical Toolbox for Sedimentary Provenance Analysis
Description: Bundles a number of established statistical methods to facilitate the visual interpretation of large datasets in sedimentary geology. Includes functionality for adaptive kernel density estimation, principal component analysis, correspondence analysis, multidimensional scaling, generalised procrustes analysis and individual differences scaling using a variety of dissimilarity measures. Univariate provenance proxies, such as single-grain ages or (isotopic) compositions are compared with the Kolmogorov-Smirnov, Kuiper or Sircombe-Hazelton L2 distances. Categorical provenance proxies such as chemical compositions are compared with the Aitchison and Bray-Curtis distances, and point-counting data with the chi-square distance. Also included are tools to plot compositional and point-counting data on ternary diagrams and point-counting data on radial plots, to calculate the sample size required for specified levels of statistical precision, and to assess the effects of hydraulic sorting on detrital compositions. Includes an intuitive query-based user interface for users who are not proficient in R.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>

Diff between provenance versions 2.4 dated 2020-03-19 and 3.0 dated 2021-02-24

 DESCRIPTION                |   12 ++---
 MD5                        |   56 ++++++++++++------------
 R/gui.R                    |   18 +++----
 R/indscal.R                |    5 --
 R/provenance.R             |    4 -
 R/toolbox.R                |  102 +++++++++++++++++++++------------------------
 README.md                  |   11 ++--
 man/KDE.Rd                 |    3 -
 man/KDEs.Rd                |   14 +++++-
 man/MDS.Rd                 |    3 -
 man/as.compositional.Rd    |    2 
 man/minsorting.Rd          |   13 ++++-
 man/plot.GPA.Rd            |    3 -
 man/plot.INDSCAL.Rd        |   17 ++++++-
 man/plot.MDS.Rd            |   17 ++++++-
 man/plot.PCA.Rd            |   11 +++-
 man/plot.compositional.Rd  |    3 -
 man/plot.distributional.Rd |   12 ++++-
 man/plot.minsorting.Rd     |    3 -
 man/plot.ternary.Rd        |   19 ++++++--
 man/procrustes.Rd          |    2 
 man/provenance.Rd          |   22 ++++-----
 man/radialplot.Rd          |   19 +++++++-
 man/read.compositional.Rd  |   14 ++++--
 man/read.counts.Rd         |   14 ++++--
 man/read.densities.Rd      |   10 +++-
 man/read.distributional.Rd |   15 +++++-
 man/subset.Rd              |    6 --
 man/ternary.ellipse.Rd     |    9 +--
 29 files changed, 268 insertions(+), 171 deletions(-)

More information about provenance at CRAN
Permanent link

Package permutes updated to version 2.0.1 with previous version 2.0 dated 2021-02-22

Title: Permutation Tests for Time Series Data
Description: Helps you determine the analysis window to use when analyzing densely-sampled time-series data, such as EEG data, using permutation testing (Maris & Oostenveld, 2007) <doi:10.1016/j.jneumeth.2007.03.024>. These permutation tests can help identify the timepoints where significance of an effect begins and ends, and the results can be plotted in various types of heatmap for reporting. Mixed-effects models are supported using an implementation of the approach by Lee & Braun (2012) <doi:10.1111/j.1541-0420.2011.01675.x>.
Author: Cesko C. Voeten [aut, cre]
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>

Diff between permutes versions 2.0 dated 2021-02-22 and 2.0.1 dated 2021-02-24

 DESCRIPTION            |    6 +++---
 MD5                    |   18 +++++++++---------
 R/buildmer.R           |    4 ++--
 build/vignette.rds     |binary
 data/MMN.RData         |binary
 inst/doc/buildmer.R    |    2 +-
 inst/doc/buildmer.Rmd  |    8 ++++----
 inst/doc/buildmer.pdf  |binary
 inst/doc/permutes.pdf  |binary
 vignettes/buildmer.Rmd |    8 ++++----
 10 files changed, 23 insertions(+), 23 deletions(-)

More information about permutes at CRAN
Permanent link

Package eudract updated to version 0.9.3 with previous version 0.9.2 dated 2020-04-06

Title: Creates Safety Results Summary in XML to Upload to EudraCT
Description: The remit of the European Clinical Trials Data Base (EudraCT <https://eudract.ema.europa.eu/> ) is to provide open access to summaries of all registered clinical trial results; thus aiming to prevent non-reporting of negative results and provide open-access to results to inform future research. The amount of information required and the format of the results, however, imposes a large extra workload at the end of studies on clinical trial units. In particular, the adverse-event-reporting component requires entering: each unique combination of treatment group and safety event; for every such event above, a further 4 pieces of information (body system, number of occurrences, number of subjects, number exposed) for non-serious events, plus an extra three pieces of data for serious adverse events (numbers of causally related events, deaths, causally related deaths). This package prepares the required statistics needed by EudraCT and formats them into the precise requirements to directly upload an XML file into the web portal, with no further data entry by hand.
Author: Simon Bond [cre], Beatrice Pantaleo [aut]
Maintainer: Simon Bond <simon.bond@addenbrookes.nhs.uk>

Diff between eudract versions 0.9.2 dated 2020-04-06 and 0.9.3 dated 2021-02-24

 DESCRIPTION                             |   10 ++++----
 MD5                                     |   40 +++++++++++++++++---------------
 NAMESPACE                               |    2 -
 NEWS.md                                 |    5 ++++
 R/safety_summary.R                      |    2 +
 build/vignette.rds                      |binary
 inst/doc/eudract.Rmd                    |    2 -
 inst/doc/eudract.html                   |   19 ++++++---------
 man/append_xml.Rd                       |   22 ++++++++---------
 man/create.safety_summary.Rd            |    2 -
 man/df_to_char.Rd                       |   28 +++++++++++-----------
 man/eudract_convert.Rd                  |    2 -
 man/print.safety_summary.Rd             |   32 ++++++++++++-------------
 man/safety.Rd                           |    8 ++++--
 man/safety_summary.Rd                   |    2 -
 man/simple_safety_xml.Rd                |    2 -
 man/soc_code.Rd                         |    8 ++++--
 tests/testthat/data/fix_ucl.R           |only
 tests/testthat/data/output_from_ucl.xml |only
 tests/testthat/data/simple_from_ucl.xml |only
 tests/testthat/data/socless.xml         |only
 tests/testthat/test_errors.R            |   11 ++++++++
 vignettes/eudract.Rmd                   |    2 -
 23 files changed, 111 insertions(+), 88 deletions(-)

More information about eudract at CRAN
Permanent link

Package ctsem updated to version 3.4.2 with previous version 3.4.1 dated 2020-12-18

Title: Continuous Time Structural Equation Modelling
Description: Hierarchical continuous time state space modelling, for linear and nonlinear systems measured by continuous variables, with limited support for binary data. The subject specific dynamic system is modelled as a stochastic differential equation (SDE), measurement models are typically multivariate normal factor models. Linear mixed effects SDE's estimated via maximum likelihood and optimization are the default. Nonlinearities, (state dependent parameters) and random effects on all parameters are possible, using either max likelihood / max a posteriori optimization (with optional importance sampling) or Stan's Hamiltonian Monte Carlo sampling. See <https://github.com/cdriveraus/ctsem/raw/master/vignettes/hierarchicalmanual.pdf> for details. Priors may be used. For the conceptual overview of the hierarchical Bayesian linear SDE approach, see <https://www.researchgate.net/publication/324093594_Hierarchical_Bayesian_Continuous_Time_Dynamic_Modeling>. Exogenous inputs may also be included, for an overview of such possibilities see <https://www.researchgate.net/publication/328221807_Understanding_the_Time_Course_of_Interventions_with_Continuous_Time_Dynamic_Models> . Stan based functions are not available on 32 bit Windows systems at present. <https://cdriver.netlify.app/> contains some tutorial blog posts.
Author: Charles Driver [aut, cre, cph], Manuel Voelkle [aut, cph], Han Oud [aut, cph], Trustees of Columbia University [cph]
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>

Diff between ctsem versions 3.4.1 dated 2020-12-18 and 3.4.2 dated 2021-02-24

 DESCRIPTION                              |   12 
 MD5                                      |   88 ++--
 NEWS                                     |    7 
 R/JKalman.R                              |only
 R/covml.R                                |   92 ++--
 R/ctCheckFit.R                           |  124 ++++--
 R/ctDiscretePars.R                       |   74 ++-
 R/ctJacobian.R                           |   23 -
 R/ctKalman.R                             |   19 -
 R/ctModelHigherOrder.R                   |    2 
 R/ctModelLatex.R                         |   24 -
 R/ctStanContinuousPars.R                 |   10 
 R/ctStanData.R                           |   63 ++-
 R/ctStanFit.R                            |   11 
 R/ctStanKalman.R                         |   50 --
 R/ctStanModelWriter.R                    |  217 ++++++-----
 R/ctSummarise.R                          |  588 ++++++++++++++++---------------
 R/extract.ctStanFit.R                    |   19 -
 R/gdbfgs.R                               |only
 R/isdiag.R                               |    6 
 R/listOfMatrices.R                       |    2 
 R/sgd.R                                  |  384 ++++++++++++--------
 R/sgdmcmc.R                              |   47 +-
 R/stanoptimis.R                          |  450 ++++++-----------------
 R/summary.ctStanFit.R                    |    4 
 build/vignette.rds                       |binary
 data/ctstantestdat.rda                   |binary
 data/ctstantestfit.rda                   |binary
 inst/doc/hierarchicalmanual.pdf          |binary
 man/ctAddSamples.Rd                      |    1 
 man/ctCheckFit.Rd                        |   12 
 man/ctExtract.Rd                         |    4 
 man/ctStanDiscretePars.Rd                |    9 
 man/isdiag.Rd                            |    6 
 man/stanoptimis.Rd                       |    7 
 src/stan_files/ctsm.stan                 |  196 +++++-----
 src/stan_files/ctsmgen.stan              |  194 +++++-----
 tests/testthat/test-ctLOO.R              |    2 
 tests/testthat/test-ctRaschExampleTest.R |   16 
 tests/testthat/test-dtVct.R              |   40 --
 tests/testthat/test-knownFits.R          |    7 
 tests/testthat/test-nonlinearVlinear.R   |   10 
 tests/testthat/test-stantipred.R         |    2 
 tests/testthat/test-sunspots.R           |    4 
 tests/testthat/test-timevarying.R        |   11 
 tests/testthat/test-ukfpoptest.R         |   34 +
 46 files changed, 1505 insertions(+), 1366 deletions(-)

More information about ctsem at CRAN
Permanent link

Package cmstatr updated to version 0.8.0 with previous version 0.7.1 dated 2020-12-10

Title: Statistical Methods for Composite Material Data
Description: An implementation of the statistical methods commonly used for advanced composite materials in aerospace applications. This package focuses on calculating basis values (lower tolerance bounds) for material strength properties, as well as performing the associated diagnostic tests. This package provides functions for calculating basis values assuming several different distributions, as well as providing functions for non-parametric methods of computing basis values. Functions are also provided for testing the hypothesis that there is no difference between strength and modulus data from an alternate sample and that from a "qualification" or "baseline" sample. For a discussion of these statistical methods and their use, see the Composite Materials Handbook, Volume 1 (2012, ISBN: 978-0-7680-7811-4). Additional details about this package are available in the paper by Kloppenborg (2020, <doi:10.21105/joss.02265>).
Author: Stefan Kloppenborg [aut, cre], Billy Cheng [ctb], Ally Fraser [ctb]
Maintainer: Stefan Kloppenborg <stefan@kloppenborg.ca>

Diff between cmstatr versions 0.7.1 dated 2020-12-10 and 0.8.0 dated 2021-02-24

 DESCRIPTION                                                |    8 
 MD5                                                        |  172 
 NAMESPACE                                                  |  168 
 NEWS.md                                                    |  172 
 R/adk.R                                                    |  419 -
 R/adtest.R                                                 |  612 +-
 R/basis.R                                                  | 3225 +++++-----
 R/checks.R                                                 |  170 
 R/cmstatr.R                                                |   12 
 R/cv.R                                                     |   77 
 R/data.R                                                   |   30 
 R/equiv.R                                                  | 1884 +++---
 R/generics.R                                               |   28 
 R/levene.R                                                 |  457 -
 R/mnr.R                                                    |  609 +-
 R/norm.R                                                   |  791 +-
 R/plotting.R                                               |  212 
 R/util.R                                                   |   78 
 R/verifytidy.R                                             |   54 
 README.md                                                  |  270 
 build/vignette.rds                                         |binary
 inst/CITATION                                              |   34 
 inst/WORDLIST                                              |   78 
 inst/doc/adktest.R                                         |   12 
 inst/doc/adktest.Rmd                                       |  160 
 inst/doc/adktest.html                                      |  684 +-
 inst/doc/cmstatr_Graphing.R                                |  362 -
 inst/doc/cmstatr_Graphing.Rmd                              |  676 +-
 inst/doc/cmstatr_Graphing.html                             | 1232 ++--
 inst/doc/cmstatr_Tutorial.R                                |  420 -
 inst/doc/cmstatr_Tutorial.Rmd                              |  902 +--
 inst/doc/cmstatr_Tutorial.html                             | 1368 ++--
 inst/extdata/k1.vangel.csv                                 |   32 
 inst/extdata/k2.vangel.csv                                 |   32 
 man/ad_ksample.Rd                                          |  171 
 man/anderson_darling.Rd                                    |  245 
 man/augment.mnr.Rd                                         |   17 
 man/basis.Rd                                               |  888 +--
 man/calc_cv_star.Rd                                        |   87 
 man/carbon.fabric.Rd                                       |   48 
 man/cmstatr-package.Rd                                     |   62 
 man/cv.Rd                                                  |   84 
 man/equiv_change_mean.Rd                                   |  316 -
 man/equiv_mean_extremum.Rd                                 |  343 -
 man/glance.adk.Rd                                          |  101 
 man/glance.anderson_darling.Rd                             |  105 
 man/glance.basis.Rd                                        |  163 
 man/glance.equiv_change_mean.Rd                            |  167 
 man/glance.equiv_mean_extremum.Rd                          |  137 
 man/glance.levene.Rd                                       |  107 
 man/glance.mnr.Rd                                          |   93 
 man/hk_ext.Rd                                              |  198 
 man/k_equiv.Rd                                             |  178 
 man/k_factor_normal.Rd                                     |  182 
 man/levene_test.Rd                                         |  159 
 man/maximum_normed_residual.Rd                             |  184 
 man/nonpara_binomial_rank.Rd                               |  154 
 man/normalize_group_mean.Rd                                |  102 
 man/normalize_ply_thickness.Rd                             |  141 
 man/reexports.Rd                                           |    6 
 man/stat_esf.Rd                                            |   94 
 man/stat_normal_surv_func.Rd                               |   96 
 man/transform_mod_cv.Rd                                    |  254 
 tests/figs/deps.txt                                        |    6 
 tests/figs/plotting/stat-esf.svg                           |  190 
 tests/figs/plotting/stat-normal-surv-func-and-stat-esf.svg | 2538 ++++----
 tests/figs/plotting/stat-normal-surv-func.svg              |  120 
 tests/spelling.R                                           |    6 
 tests/testthat.R                                           |    8 
 tests/testthat/test-adk.R                                  |  430 -
 tests/testthat/test-adtest.R                               |  516 -
 tests/testthat/test-basis.R                                | 3824 ++++++-------
 tests/testthat/test-checks.R                               |  219 
 tests/testthat/test-cv.R                                   |   49 
 tests/testthat/test-equiv.R                                |  918 +--
 tests/testthat/test-levene.R                               |  426 -
 tests/testthat/test-lintr.R                                |   18 
 tests/testthat/test-mnr.R                                  |  820 +-
 tests/testthat/test-normalize.R                            |  312 -
 tests/testthat/test-plotting.R                             |   88 
 tests/testthat/test-verifytidy.R                           |   98 
 tests/testthat/test-workflow.R                             | 1434 ++--
 vignettes/adktest.Rmd                                      |  160 
 vignettes/bibliography.json                                |   90 
 vignettes/cmstatr_Graphing.Rmd                             |  676 +-
 vignettes/cmstatr_Tutorial.Rmd                             |  902 +--
 vignettes/ieee.csl                                         |  706 +-
 87 files changed, 17685 insertions(+), 17191 deletions(-)

More information about cmstatr at CRAN
Permanent link

Package RPEnsemble updated to version 0.5 with previous version 0.4 dated 2017-10-07

Title: Random Projection Ensemble Classification
Description: Implements the methodology of "Cannings, T. I. and Samworth, R. J. (2017) Random-projection ensemble classification, J. Roy. Statist. Soc., Ser. B. (with discussion), 79, 959--1035". The random projection ensemble classifier is a general method for classification of high-dimensional data, based on careful combination of the results of applying an arbitrary base classifier to random projections of the feature vectors into a lower-dimensional space. The random projections are divided into non-overlapping blocks, and within each block the projection yielding the smallest estimate of the test error is selected. The random projection ensemble classifier then aggregates the results of applying the base classifier on the selected projections, with a data-driven voting threshold to determine the final assignment.
Author: Timothy I. Cannings and Richard J. Samworth
Maintainer: Timothy I. Cannings <timothy.cannings@ed.ac.uk>

Diff between RPEnsemble versions 0.4 dated 2017-10-07 and 0.5 dated 2021-02-24

 DESCRIPTION               |   17 +++++++++--------
 MD5                       |   22 +++++++++++-----------
 man/Other.classifier.Rd   |    3 +--
 man/R.Rd                  |    8 ++------
 man/RPChoose.Rd           |    5 ++---
 man/RPChooseSS.Rd         |    6 ++----
 man/RPEnsemble-package.Rd |   11 +++++------
 man/RPEnsembleClass.Rd    |    3 +--
 man/RPGenerate.Rd         |    3 +--
 man/RPModel.Rd            |    5 ++---
 man/RPParallel.Rd         |    3 +--
 man/RPalpha.Rd            |    4 +---
 12 files changed, 38 insertions(+), 52 deletions(-)

More information about RPEnsemble at CRAN
Permanent link

Package ratematrix updated to version 1.2.3 with previous version 1.2.2 dated 2020-02-26

Title: Bayesian Estimation of the Evolutionary Rate Matrix
Description: The Evolutionary Rate Matrix is a variance-covariance matrix which describes both the rates of trait evolution and the evolutionary correlation among multiple traits. This package has functions to estimate these parameters using Bayesian MCMC. It is possible to test if the pattern of evolutionary correlations among traits has changed between predictive regimes painted along the branches of the phylogenetic tree. Regimes can be created a priori or estimated as part of the MCMC under a joint estimation approach. The package has functions to run MCMC chains, plot results, evaluate convergence, and summarize posterior distributions.
Author: Daniel Caetano [aut, cre], Luke Harmon [aut]
Maintainer: Daniel Caetano <caetanods1@gmail.com>

Diff between ratematrix versions 1.2.2 dated 2020-02-26 and 1.2.3 dated 2021-02-24

 ratematrix-1.2.2/ratematrix/README.md                                |only
 ratematrix-1.2.3/ratematrix/DESCRIPTION                              |   14 -
 ratematrix-1.2.3/ratematrix/MD5                                      |   95 ++++-----
 ratematrix-1.2.3/ratematrix/NAMESPACE                                |    2 
 ratematrix-1.2.3/ratematrix/R/RcppExports.R                          |    4 
 ratematrix-1.2.3/ratematrix/R/check_phy_list.R                       |only
 ratematrix-1.2.3/ratematrix/R/computeESS.R                           |   30 --
 ratematrix-1.2.3/ratematrix/R/estimateTimeMCMC.R                     |    8 
 ratematrix-1.2.3/ratematrix/R/extractCorrelation.R                   |   28 +-
 ratematrix-1.2.3/ratematrix/R/fastSimmap.R                           |   96 +++++++--
 ratematrix-1.2.3/ratematrix/R/getStartPointFromPosterior.R           |only
 ratematrix-1.2.3/ratematrix/R/likelihoodFunction.R                   |    3 
 ratematrix-1.2.3/ratematrix/R/logAnalyzer.R                          |    7 
 ratematrix-1.2.3/ratematrix/R/makePrior.R                            |   13 -
 ratematrix-1.2.3/ratematrix/R/mergePosterior.R                       |   16 -
 ratematrix-1.2.3/ratematrix/R/multRegimeJointMCMC.R                  |    6 
 ratematrix-1.2.3/ratematrix/R/multRegimeMCMC.R                       |   20 +
 ratematrix-1.2.3/ratematrix/R/plotPrior.R                            |   15 -
 ratematrix-1.2.3/ratematrix/R/plotRatematrix.R                       |   28 --
 ratematrix-1.2.3/ratematrix/R/ratematrixJointMCMC.R                  |   33 ---
 ratematrix-1.2.3/ratematrix/R/ratematrixMCMC.R                       |   66 ++----
 ratematrix-1.2.3/ratematrix/R/readMCMC.R                             |  101 +++++++++-
 ratematrix-1.2.3/ratematrix/R/samplePrior.R                          |    8 
 ratematrix-1.2.3/ratematrix/R/singleRegimeMCMC.R                     |    9 
 ratematrix-1.2.3/ratematrix/R/testRatematrix.R                       |   11 -
 ratematrix-1.2.3/ratematrix/build/vignette.rds                       |binary
 ratematrix-1.2.3/ratematrix/data/anoles.RData                        |binary
 ratematrix-1.2.3/ratematrix/data/centrarchidae.RData                 |binary
 ratematrix-1.2.3/ratematrix/inst/doc/Intro_on_the_package.html       |   19 -
 ratematrix-1.2.3/ratematrix/inst/doc/Making_prior_on_ratematrix.html |   28 +-
 ratematrix-1.2.3/ratematrix/inst/doc/Set_custom_starting_point.html  |   38 +--
 ratematrix-1.2.3/ratematrix/inst/include/distributions_and_helpers.h |   47 ----
 ratematrix-1.2.3/ratematrix/man/anoles.Rd                            |    4 
 ratematrix-1.2.3/ratematrix/man/centrarchidae.Rd                     |    4 
 ratematrix-1.2.3/ratematrix/man/computeESS.Rd                        |   30 --
 ratematrix-1.2.3/ratematrix/man/estimateTimeMCMC.Rd                  |    6 
 ratematrix-1.2.3/ratematrix/man/extractCorrelation.Rd                |   28 +-
 ratematrix-1.2.3/ratematrix/man/fastSimmap.Rd                        |   35 ++-
 ratematrix-1.2.3/ratematrix/man/getStartPointFromPosterior.Rd        |only
 ratematrix-1.2.3/ratematrix/man/makePrior.Rd                         |   13 -
 ratematrix-1.2.3/ratematrix/man/mergePosterior.Rd                    |   16 -
 ratematrix-1.2.3/ratematrix/man/plotPrior.Rd                         |   16 -
 ratematrix-1.2.3/ratematrix/man/plotRatematrix.Rd                    |   29 --
 ratematrix-1.2.3/ratematrix/man/ratematrixJointMCMC.Rd               |   31 ---
 ratematrix-1.2.3/ratematrix/man/ratematrixMCMC.Rd                    |   36 +--
 ratematrix-1.2.3/ratematrix/man/readMCMC.Rd                          |   10 
 ratematrix-1.2.3/ratematrix/man/readMCMC_Mk.Rd                       |only
 ratematrix-1.2.3/ratematrix/man/samplePrior.Rd                       |    8 
 ratematrix-1.2.3/ratematrix/man/testRatematrix.Rd                    |   11 -
 ratematrix-1.2.3/ratematrix/src/MultRegimeMCMC.cpp                   |   67 ++++++
 ratematrix-1.2.3/ratematrix/src/RcppExports.cpp                      |   14 +
 51 files changed, 526 insertions(+), 577 deletions(-)

More information about ratematrix at CRAN
Permanent link

Package econetwork updated to version 0.5.0 with previous version 0.4.1 dated 2020-09-02

Title: Analyzing Ecological Networks
Description: A collection of advanced tools, methods and models specifically designed for analyzing different types of ecological networks - especially antagonistic (food webs, host-parasite), mutualistic (plant-pollinator, plant-fungus, etc) and competitive networks, as well as their variability in time and space. Statistical models are developed to describe and understand the mechanisms that determine species interactions, and to decipher the organization of these ecological networks (Ohlmann et al. (2019) <doi:10.1111/ele.13221>, Gonzalez et al. (2020) <doi:10.1101/2020.04.02.021691>, Miele et al. (2021) submitted).
Author: Stephane Dray [ctb], Catherine Matias [ctb], Vincent Miele [aut, cre], Marc Ohlmann [aut], Giovanni Poggiato [ctb], Wilfried Thuiller [ctb]
Maintainer: Vincent Miele <vincent.miele@univ-lyon1.fr>

Diff between econetwork versions 0.4.1 dated 2020-09-02 and 0.5.0 dated 2021-02-24

 econetwork-0.4.1/econetwork/README.md                    |only
 econetwork-0.5.0/econetwork/DESCRIPTION                  |   20 ++++++++-------
 econetwork-0.5.0/econetwork/MD5                          |   20 ++++++++++++---
 econetwork-0.5.0/econetwork/NAMESPACE                    |    5 +++
 econetwork-0.5.0/econetwork/R/RcppExports.R              |only
 econetwork-0.5.0/econetwork/R/elgrin.R                   |only
 econetwork-0.5.0/econetwork/data                         |only
 econetwork-0.5.0/econetwork/man/econetwork.Rd            |    1 
 econetwork-0.5.0/econetwork/man/elgrin.Rd                |only
 econetwork-0.5.0/econetwork/man/virtualComCompetition.Rd |only
 econetwork-0.5.0/econetwork/src                          |only
 11 files changed, 31 insertions(+), 15 deletions(-)

More information about econetwork at CRAN
Permanent link

Package meta updated to version 4.17-0 with previous version 4.16-2 dated 2021-01-27

Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015): - fixed effect and random effects meta-analysis; - several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble); - statistical tests and trim-and-fill method to evaluate bias in meta-analysis; - import data from 'RevMan 5'; - prediction interval, Hartung-Knapp method for random effects model; - cumulative meta-analysis and leave-one-out meta-analysis; - meta-regression; - generalised linear mixed models; - produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>

Diff between meta versions 4.16-2 dated 2021-01-27 and 4.17-0 dated 2021-02-24

 DESCRIPTION           |   10 
 MD5                   |   70 ++--
 NAMESPACE             |    1 
 NEWS.md               |   44 ++-
 R/Pagliaro1992.R      |only
 R/crtitle.R           |   31 +-
 R/linregcore.R        |   92 ++----
 R/meta-internal.R     |   15 -
 R/meta-package.R      |    8 
 R/metabias.R          |  724 ++++++++++++++++++++++++++++++++++----------------
 R/metabin.R           |   14 
 R/metacont.R          |    7 
 R/metacor.R           |    7 
 R/metagen.R           |    7 
 R/metainc.R           |   10 
 R/metamean.R          |    7 
 R/metaprop.R          |    7 
 R/metarate.R          |    7 
 R/print.meta.R        |   40 ++
 R/setmethodbias.R     |only
 R/settings.meta.R     |    4 
 R/summary.meta.R      |    8 
 R/trimfill.R          |    5 
 R/update.meta.R       |   34 +-
 data/Pagliaro1992.rda |only
 man/Pagliaro1992.Rd   |only
 man/metabias.Rd       |  176 ++++++++----
 man/metabin.Rd        |   10 
 man/metacont.Rd       |    5 
 man/metacor.Rd        |    5 
 man/metagen.Rd        |    5 
 man/metainc.Rd        |    8 
 man/metamean.Rd       |    5 
 man/metaprop.Rd       |    5 
 man/metarate.Rd       |    5 
 man/print.meta.Rd     |   18 +
 man/trimfill.Rd       |    2 
 man/update.meta.Rd    |    6 
 38 files changed, 929 insertions(+), 473 deletions(-)

More information about meta at CRAN
Permanent link

Package lime updated to version 0.5.2 with previous version 0.5.1 dated 2019-11-12

Title: Local Interpretable Model-Agnostic Explanations
Description: When building complex models, it is often difficult to explain why the model should be trusted. While global measures such as accuracy are useful, they cannot be used for explaining why a model made a specific prediction. 'lime' (a port of the 'lime' 'Python' package) is a method for explaining the outcome of black box models by fitting a local model around the point in question an perturbations of this point. The approach is described in more detail in the article by Ribeiro et al. (2016) <arXiv:1602.04938>.
Author: Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Michaël Benesty [aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>

Diff between lime versions 0.5.1 dated 2019-11-12 and 0.5.2 dated 2021-02-24

 DESCRIPTION                              |   14 
 MD5                                      |   52 -
 NAMESPACE                                |   24 
 NEWS.md                                  |    5 
 R/lime.R                                 |    2 
 R/plot_text.R                            |    8 
 R/shiny.R                                |   43 
 README.md                                |   41 
 build/vignette.rds                       |binary
 inst/doc/Understanding_lime.R            |   22 
 inst/doc/Understanding_lime.Rmd          |   16 
 inst/doc/Understanding_lime.html         | 1406 +++++--------------------------
 man/explain.Rd                           |   64 +
 man/figures/README-unnamed-chunk-2-1.png |binary
 man/figures/README-unnamed-chunk-3-1.png |binary
 man/interactive_text_explanations.Rd     |    9 
 man/lime-package.Rd                      |    4 
 man/lime.Rd                              |   23 
 man/plot_explanations.Rd                 |    5 
 man/plot_features.Rd                     |    5 
 man/plot_image_explanation.Rd            |   13 
 man/plot_superpixels.Rd                  |   11 
 man/stop_words_sentences.Rd              |    4 
 man/test_sentences.Rd                    |    6 
 man/text_explanations.Rd                 |    7 
 man/train_sentences.Rd                   |    6 
 vignettes/Understanding_lime.Rmd         |   16 
 27 files changed, 466 insertions(+), 1340 deletions(-)

More information about lime at CRAN
Permanent link

Package marginalRisk (with last version 2021.1-7) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-01-13 2021.1-7

Permanent link
Package RcppParallel updated to version 5.0.3 with previous version 5.0.2 dated 2020-06-24

Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'. For example, the 'parallelFor()' function can be used to convert the work of a standard serial "for" loop into a parallel one and the 'parallelReduce()' function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut], Romain Francois [aut, cph], Kevin Ushey [aut, cre], Gregory Vandenbrouck [aut], Marcus Geelnard [aut, cph] (TinyThread library, http://tinythreadpp.bitsnbites.eu/), RStudio [cph], Intel [aut, cph] (Intel TBB library, https://www.threadingbuildingblocks.org/), Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>

Diff between RcppParallel versions 5.0.2 dated 2020-06-24 and 5.0.3 dated 2021-02-24

 DESCRIPTION             |    6 +++---
 MD5                     |   11 +++++++----
 inst/NEWS               |    4 ++++
 inst/lib                |only
 src/Makevars.in         |   11 +++++++++++
 src/tbb/build/macos.inc |    4 ++++
 6 files changed, 29 insertions(+), 7 deletions(-)

More information about RcppParallel at CRAN
Permanent link

New package optimLanduse with initial version 0.0.4
Package: optimLanduse
Title: Robust Land-Use Optimization
Version: 0.0.4
Authors@R: c( person(given = "Kai", family = "Husmann", role = c("aut", "cre"), email = "kai.husmann@uni-goettingen.de"), person(given = "Volker", family = "von Groß", role = "aut", email = "volker.vongross@uni-goettingen.de"), person(given = "Jasper", family = "Fuchs", role = "aut", email = "jasper.fuchs@uni-goettingen.de"), person(given = "Kai", family = "Bödeker", role = "aut", email = "kai.boedeker@tum.de") )
Description: Robust multi-criteria land-allocation optimization that explicitly accounts for the uncertainty of the indicators in the objective function. Solves the problem of allocating scarce land to various land-use options with regard to multiple, coequal indicators. The method aims to find the land allocation that represents the indicator composition with the best possible trade-off under uncertainty. optimLanduse includes the actual optimization procedure as described by Knoke et al. (2016) <doi:10.1038/ncomms11877> and the post-hoc calculation of the portfolio performance as presented by Gosling et al. (2020) <doi:10.1007/s10457-020-00519-0>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Imports: lpSolveAPI (>= 5.5.2.0-17.7), tidyr (>= 1.1.2), dplyr (>= 1.0.0)
Suggests: readxl, ggplot2
URL: https://gitlab.gwdg.de/forest_economics_goettingen/optimlanduse
NeedsCompilation: no
Packaged: 2021-02-23 14:59:34 UTC; kai
Author: Kai Husmann [aut, cre], Volker von Groß [aut], Jasper Fuchs [aut], Kai Bödeker [aut]
Maintainer: Kai Husmann <kai.husmann@uni-goettingen.de>
Repository: CRAN
Date/Publication: 2021-02-24 10:30:02 UTC

More information about optimLanduse at CRAN
Permanent link

New package newsmd with initial version 0.3.1
Package: newsmd
Title: Creation of NEWS.md File
Version: 0.3.1
Date: 2021-02-23
Authors@R: person(given = "Jakob", family = "Gepp", role = c("cre", "aut"), email = "jakob.gepp@yahoo.de")
Description: Adding updates (version or bullet points) to the NEWS.md file.
License: MIT + file LICENSE
URL: https://github.com/Dschaykib/newsmd
BugReports: https://github.com/Dschaykib/newsmd/issues
Depends: R (>= 3.3)
Imports: R6
Suggests: desc, knitr, lintr, rmarkdown, testthat
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-GB
LazyData: true
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-23 16:20:56 UTC; jakobgepp
Author: Jakob Gepp [cre, aut]
Maintainer: Jakob Gepp <jakob.gepp@yahoo.de>
Repository: CRAN
Date/Publication: 2021-02-24 10:50:02 UTC

More information about newsmd at CRAN
Permanent link

New package mscp with initial version 1.0
Package: mscp
Type: Package
Title: Multiscale Change Point Detection via Gradual Bandwidth Adjustment in Moving Sum Processes
Version: 1.0
Date: 2021-02-19
Authors@R: c(person("Tijana", "Levajkovic", role = "aut"), person("Michael", "Messer", role = c("aut", "cre"), email = "michael.messer@tuwien.ac.at"))
Maintainer: Michael Messer <michael.messer@tuwien.ac.at>
Description: Multiscale moving sum procedure for the detection of changes in expectation in univariate sequences. References - Multiscale change point detection via gradual bandwidth adjustment in moving sum processes (2021+), Tijana Levajkovic and Michael Messer.
License: GPL-3
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-23 11:13:14 UTC; messer
Author: Tijana Levajkovic [aut], Michael Messer [aut, cre]
Repository: CRAN
Date/Publication: 2021-02-24 10:10:02 UTC

More information about mscp at CRAN
Permanent link

New package lgrExtra with initial version 0.0.5
Type: Package
Package: lgrExtra
Title: Extra Appenders for 'lgr'
Version: 0.0.5
Authors@R: person(given = "Stefan", family = "Fleck", role = c("aut", "cre"), email = "stefan.b.fleck@gmail.com", comment = c(ORCID = "0000-0003-3344-9851"))
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Description: Additional appenders for the logging package 'lgr' that support logging to databases, email and push notifications.
License: MIT + file LICENSE
Imports: data.table, lgr
Suggests: covr, DBI, gmailr, jsonlite, RMariaDB, RPostgres, RPushbullet, RSQLite, rsyslog, sendmailR, testthat, knitr, rmarkdown
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1.9000
NeedsCompilation: no
Packaged: 2021-02-23 10:42:24 UTC; hoelk
Author: Stefan Fleck [aut, cre] (<https://orcid.org/0000-0003-3344-9851>)
Repository: CRAN
Date/Publication: 2021-02-24 10:10:05 UTC

More information about lgrExtra at CRAN
Permanent link

Package EWS updated to version 0.2.0 with previous version 0.1.0 dated 2020-04-07

Title: Early Warning System
Description: The purpose of Early Warning Systems (EWS) is to detect accurately the occurrence of a crisis, which is represented by a binary variable which takes the value of one when the event occurs, and the value of zero otherwise. EWS are a toolbox for policymakers to prevent or attenuate the impact of economic downturns. Modern EWS are based on the econometric framework of Kauppi and Saikkonen (2008) <doi:10.1162/rest.90.4.777>. Specifically, this framework includes four dichotomous models, relying on a logit approach to model the relationship between yield spreads and future recessions, controlling for recession risk factors. These models can be estimated in a univariate or a balanced panel framework as in Candelon, Dumitrescu and Hurlin (2014) <doi:10.1016/j.ijforecast.2014.03.015>. This package provides both methods for estimating these models and a dataset covering 13 OECD countries over a period of 45 years. In addition, this package also provides methods for the analysis of the propagation mechanisms of an exogenous shock, as well as robust confidence intervals for these response functions using a block-bootstrap method as in Lajaunie (2021). This package constitutes a useful toolbox (data and functions) for scholars as well as policymakers.
Author: Jean-Baptiste Hasse [aut], Quentin Lajaunie [aut, cre]
Maintainer: Quentin Lajaunie <quentin_lajaunie@hotmail.fr>

Diff between EWS versions 0.1.0 dated 2020-04-07 and 0.2.0 dated 2021-02-24

 EWS-0.1.0/EWS/R/Functions_EWS.R             |only
 EWS-0.2.0/EWS/DESCRIPTION                   |   16 ++++-------
 EWS-0.2.0/EWS/MD5                           |   29 ++++++++++++++-------
 EWS-0.2.0/EWS/NAMESPACE                     |    4 +-
 EWS-0.2.0/EWS/R/EWS_functions.R             |only
 EWS-0.2.0/EWS/data/data_USA.rda             |binary
 EWS-0.2.0/EWS/data/data_panel.rda           |binary
 EWS-0.2.0/EWS/man/BlockBootstrapp.Rd        |only
 EWS-0.2.0/EWS/man/EWS_AM_Criterion.Rd       |only
 EWS-0.2.0/EWS/man/EWS_CSA_Criterion.Rd      |only
 EWS-0.2.0/EWS/man/EWS_NSR_Criterion.Rd      |only
 EWS-0.2.0/EWS/man/GIRF_Dichotomous_model.Rd |only
 EWS-0.2.0/EWS/man/GIRF_Index_CI.Rd          |only
 EWS-0.2.0/EWS/man/GIRF_Proba_CI.Rd          |only
 EWS-0.2.0/EWS/man/Logistic_Estimation.Rd    |   38 +++++-----------------------
 EWS-0.2.0/EWS/man/Matrix_lag.Rd             |    6 +++-
 EWS-0.2.0/EWS/man/Simulation_GIRF.Rd        |only
 EWS-0.2.0/EWS/man/Vector_Error.Rd           |only
 EWS-0.2.0/EWS/man/Vector_lag.Rd             |    3 ++
 EWS-0.2.0/EWS/man/data_USA.Rd               |   16 ++++++++---
 EWS-0.2.0/EWS/man/data_panel.Rd             |    7 +++--
 21 files changed, 58 insertions(+), 61 deletions(-)

More information about EWS at CRAN
Permanent link

New package tinyspotifyr with initial version 0.2.2
Package: tinyspotifyr
Title: Tinyverse R Wrapper for the 'Spotify' Web API
Version: 0.2.2
Authors@R: c(person("Troy", "Hernandez", email = "troy.hernandez.phd@gmail.com", role = c("aut", "cre")), person("Charlie", "Thompson", email = "chuck@rcharlie.com", role = c("aut")), person("Josiah", "Parry", email = "josiah.parry@yahoo.com", role = "aut"), person("Donal", "Phipps", email = "donal.phipps@gmail.com", role = "aut"), person("Tom", "Wolff", email = "tom.wolff@duke.edu", role = "aut"))
Author: Troy Hernandez [aut, cre], Charlie Thompson [aut], Josiah Parry [aut], Donal Phipps [aut], Tom Wolff [aut]
Maintainer: Troy Hernandez <troy.hernandez.phd@gmail.com>
Description: An R wrapper for the 'Spotify' Web API <https://developer.spotify.com/web-api/>.
Depends: R (>= 3.2)
Imports: httr, jsonlite
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
URL: https://github.com/TroyHernandez/tinyspotifyr
BugReports: https://github.com/TroyHernandez/tinyspotifyr/issues
NeedsCompilation: no
Packaged: 2021-02-21 13:52:51 UTC; troy
Repository: CRAN
Date/Publication: 2021-02-24 09:30:02 UTC

More information about tinyspotifyr at CRAN
Permanent link

New package stlTDNN with initial version 0.1.0
Package: stlTDNN
Type: Package
Title: STL Decomposition and TDNN Hybrid Time Series Forecasting
Version: 0.1.0
Authors@R: c(person(given = "Girish Kumar", family = "Jha", role = c("aut", "cre"), email = "girish.stat@gmail.com"), person(given = "Ronit", family = "Jaiswal", role = c("aut", "ctb")), person(given = "Kapil", family = "Choudhary", role = "ctb"), person(given = "Rajeev Ranjan", family = "Kumar", role = "ctb"))
Maintainer: Girish Kumar Jha <girish.stat@gmail.com>
Description: Implementation of hybrid STL decomposition based time delay neural network model for univariate time series forecasting. For method details see Jha G K, Sinha, K (2014). <doi:10.1007/s00521-012-1264-z>, Xiong T, Li C, Bao Y (2018). <doi:10.1016/j.neucom.2017.11.053>.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Imports: forecast, nnfor
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2021-02-22 14:54:50 UTC; Rajeev-PC
Author: Girish Kumar Jha [aut, cre], Ronit Jaiswal [aut, ctb], Kapil Choudhary [ctb], Rajeev Ranjan Kumar [ctb]
Repository: CRAN
Date/Publication: 2021-02-24 09:20:03 UTC

More information about stlTDNN at CRAN
Permanent link

New package RxODE with initial version 1.0.4
Package: RxODE
Version: 1.0.4
Title: Facilities for Simulating from ODE-Based Models
Authors@R: c( person("Matthew L.","Fidler", role = c("aut"), email = "matthew.fidler@gmail.com", comment=c(ORCID="0000-0001-8538-6691")), person("Melissa", "Hallow", role = "aut", email = "hallowkm@uga.edu"), person("Wenping", "Wang", role = c("aut", "cre"), email = "wwang8198@gmail.com"), person("Zufar", "Mulyukov", role="ctb", email="zufar.mulyukov@novartis.com"), person("Alan", "Hindmarsh",role="ctb"), person("Awad H.", "Al-Mohy",role="ctb"), person("Matt", "Dowle", role="ctb", email="mattjdowle@gmail.com"), person("Cleve", "Moler", role="ctb"), person("David", "Cooley", role="ctb"), person("Daniel C.", "Dillon", role="ctb"), person("Drew", "Schmidt", role="ctb"), person("Arun", "Srinivasan", role="ctb", email="arunkumar.sriniv@gmail.com"), person("Ernst", "Hairer", role="ctb"), person("Gerhard", "Wanner", role="ctb"), person("Goro", "Fuji", role="ctb", email="gfuji@cpan.org"), person("Hadley", "Wickham", role="ctb"), person("Jack", "Dongarra", role="ctb"), person("Linda", "Petzold", role="ctb"), person("Martin", "Maechler", role="ctb"), person("Matteo", "Fasiolo", email = "matteo.fasiolo@gmail.com", role = "ctb"), person("Morwenn","", role="ctb"), person("Nicholas J.", "Higham",role="ctb"), person("Roger B.", "Sidje", role="ctb"), person("Simon", "Frost", role="ctb"), person("Kevin", "Ushey", role="ctb"), person("Yu", "Feng", role="ctb") )
Maintainer: Wenping Wang <wwang8198@gmail.com>
Depends: R (>= 3.6.0)
Suggests: spelling, Matrix, DT, covr, crayon, curl, data.table (>= 1.12.4), devtools, digest, dplyr (>= 0.8.0), ggrepel, gridExtra, htmltools, knitr, learnr, microbenchmark, nlme, remotes, rlang, rmarkdown, scales, shiny, stringi, symengine, testthat, tidyr, usethis, vdiffr, xgxr, pillar, tibble, rsconnect, patchwork
Imports: PreciseSums (>= 0.3), Rcpp (>= 0.12.3), assertthat, backports, checkmate, cli (>= 2.0.0), dparser (>= 0.1.8), ggplot2, inline, lotri (>= 0.2.2), magrittr, memoise, methods, rex, qs, sys, units (>= 0.6-0), tools, utils
Description: Facilities for running simulations from ordinary differential equation ('ODE') models, such as pharmacometrics and other compartmental models. A compilation manager translates the ODE model into C, compiles it, and dynamically loads the object code into R for improved computational efficiency. An event table object facilitates the specification of complex dosing regimens (optional) and sampling schedules. NB: The use of this package requires both C and Fortran compilers, for details on their use with R please see Section 6.3, Appendix A, and Appendix D in the "R Administration and Installation" manual. Also the code is mostly released under GPL. The 'VODE' and 'LSODA' are in the public domain. The information is available in the inst/COPYRIGHTS.
BugReports: https://github.com/nlmixrdevelopment/RxODE/issues
NeedsCompilation: yes
VignetteBuilder: knitr
License: GPL (>= 3)
URL: https://nlmixrdevelopment.github.io/RxODE/
RoxygenNote: 7.1.1
Biarch: true
LinkingTo: dparser (>= 0.1.8), PreciseSums (>= 0.3), RcppEigen (>= 0.3.3.3.0), RcppArmadillo (>= 0.9.300.2.0), sitmo, StanHeaders (>= 2.18.0), BH, checkmate, qs
Encoding: UTF-8
LazyData: true
Language: en-US
Packaged: 2021-02-18 13:44:52 UTC; annie
Author: Matthew L. Fidler [aut] (<https://orcid.org/0000-0001-8538-6691>), Melissa Hallow [aut], Wenping Wang [aut, cre], Zufar Mulyukov [ctb], Alan Hindmarsh [ctb], Awad H. Al-Mohy [ctb], Matt Dowle [ctb], Cleve Moler [ctb], David Cooley [ctb], Daniel C. Dillon [ctb], Drew Schmidt [ctb], Arun Srinivasan [ctb], Ernst Hairer [ctb], Gerhard Wanner [ctb], Goro Fuji [ctb], Hadley Wickham [ctb], Jack Dongarra [ctb], Linda Petzold [ctb], Martin Maechler [ctb], Matteo Fasiolo [ctb], Morwenn [ctb], Nicholas J. Higham [ctb], Roger B. Sidje [ctb], Simon Frost [ctb], Kevin Ushey [ctb], Yu Feng [ctb]
Repository: CRAN
Date/Publication: 2021-02-24 09:40:10 UTC

More information about RxODE at CRAN
Permanent link

New package rtsVis with initial version 0.0.1
Package: rtsVis
Type: Package
Title: Raster Time Series Visualization
Version: 0.0.1
Depends: R (>= 3.5.0)
Date: 2021-02-23
Authors@R: c(person("Johannes", "Mast", role = c("aut", "cre"), email = "johannes.mast@stud-mail.uni-wuerzburg.de", comment = c(ORCID = "0000-0001-6595-5834")), person("Jakob", "Schwalb-Willmann", email = "movevis@schwalb-willmann.de", role = c("aut"), comment = c(ORCID = "0000-0003-2665-1509")))
Description: A lightweight 'R' package to visualize large raster time series, building on a fast temporal interpolation core.
License: GPL-3
Encoding: UTF-8
Imports: ggplot2, RStoolbox, moveVis, raster, stats, dplyr, pbapply, sp, sf, tidyr, assertthat
BugReports: https://github.com/JohMast/rtsVis/issues
RoxygenNote: 7.1.1
Suggests: spelling
LazyData: true
Language: en-US
NeedsCompilation: no
Packaged: 2021-02-23 09:37:50 UTC; b
Author: Johannes Mast [aut, cre] (<https://orcid.org/0000-0001-6595-5834>), Jakob Schwalb-Willmann [aut] (<https://orcid.org/0000-0003-2665-1509>)
Maintainer: Johannes Mast <johannes.mast@stud-mail.uni-wuerzburg.de>
Repository: CRAN
Date/Publication: 2021-02-24 10:00:02 UTC

More information about rtsVis at CRAN
Permanent link

New package rlog with initial version 0.1.0
Package: rlog
Title: A Simple, Opinionated Logging Utility
Version: 0.1.0
Authors@R: person(given = "Mark", family = "Sellors", role = c("aut", "cre"), email = "rstats@5vcc.com")
Description: A very lightweight package that writes out log messages in an opinionated way. Simpler and lighter than other logging packages, 'rlog' provides a compact feature set that focuses on getting the job done in a Unix-like way.
URL: https://github.com/sellorm/rlog
BugReports: https://github.com/sellorm/rlog/issues
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2021-02-22 15:04:40 UTC; sellorm
Author: Mark Sellors [aut, cre]
Maintainer: Mark Sellors <rstats@5vcc.com>
Repository: CRAN
Date/Publication: 2021-02-24 09:20:05 UTC

More information about rlog at CRAN
Permanent link

Package ProAE updated to version 0.1.1 with previous version 0.1.0 dated 2021-02-22

Title: PRO-CTCAE Data Management, Analysis, and Graphical Tools
Description: A collection of tools to facilitate standardized analysis and graphical procedures when using the National Cancer Institute’s Patient-Reported Outcomes version of the Common Terminology Criteria for Adverse Events (PRO-CTCAE).
Author: Blake Langlais [aut, cre], Amylou Dueck [aut]
Maintainer: Blake Langlais <langlais.blake@mayo.edu>

Diff between ProAE versions 0.1.0 dated 2021-02-22 and 0.1.1 dated 2021-02-24

 DESCRIPTION           |    6 +++---
 MD5                   |   18 +++++++++---------
 R/ProAE.R             |   12 ++++++------
 R/toxFigures.R        |    8 ++++----
 R/toxScores.R         |    2 +-
 man/PROCTCAE_table.Rd |    4 ++--
 man/tox_acute.Rd      |    2 +-
 man/tox_chronic.Rd    |    2 +-
 man/tox_cumulative.Rd |    2 +-
 man/tox_late.Rd       |    2 +-
 10 files changed, 29 insertions(+), 29 deletions(-)

More information about ProAE at CRAN
Permanent link

New package NADA2 with initial version 1.0.0
Package: NADA2
Type: Package
Title: Data Analysis for Censored Environmental Data
Version: 1.0.0
Date: 2021-02-21
Authors@R: c(person("Paul", "Julian",role=c("aut","cre"), email="pauljulianphd@gmail.com"), person("Dennis", "Helsel",role=c("aut","cph"), email="dhelsel@practicalstats.com"))
Maintainer: Paul Julian <pauljulianphd@gmail.com>
URL: https://github.com/SwampThingPaul/NADA2
BugReports: https://github.com/SwampThingPaul/NADA2/issues
Description: Contains methods described by Dennis Helsel in his book "Statistics for Censored Environmental Data using `Minitab` and R" (2011) and courses and videos at <https://practicalstats.com>. This package adds new functions to the `NADA` Package.
License: MIT + file LICENSE
Depends: R (>= 3.6)
Imports: grDevices, graphics, stats, utils, EnvStats, fitdistrplus, Kendall, multcomp, NADA, perm, survminer, mgcv, cenGAM, vegan, coin, survival
Suggests: knitr, rmarkdown
Encoding: UTF-8
LazyLoad: yes
LazyData: yes
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-02-22 18:42:04 UTC; Julian_P
Author: Paul Julian [aut, cre], Dennis Helsel [aut, cph]
Repository: CRAN
Date/Publication: 2021-02-24 09:50:05 UTC

More information about NADA2 at CRAN
Permanent link

Package Hmsc updated to version 3.0-11 with previous version 3.0-9 dated 2020-10-29

Title: Hierarchical Model of Species Communities
Description: Hierarchical Modelling of Species Communities (HMSC) is a model-based approach for analyzing community ecological data. This package implements it in the Bayesian framework with Gibbs Markov chain Monte Carlo (MCMC) sampling (Tikhonov et al. (2020) <doi:10.1111/2041-210X.13345>).
Author: Gleb Tikhonov [aut], Otso Ovaskainen [aut, cre] (<https://orcid.org/0000-0001-9750-4421>), Jari Oksanen [aut], Melinda de Jonge [aut], Oystein Opedal [aut], Tad Dallas [aut]
Maintainer: Otso Ovaskainen <otso.ovaskainen@helsinki.fi>

Diff between Hmsc versions 3.0-9 dated 2020-10-29 and 3.0-11 dated 2021-02-24

 DESCRIPTION                               |   10 -
 MD5                                       |   97 +++++++--------
 NAMESPACE                                 |    7 +
 R/Hmsc.R                                  |  158 +++++++++++++++----------
 R/HmscRandomLevel.R                       |   76 ++++++++----
 R/alignPosterior.R                        |    2 
 R/computeDataParameters.R                 |   17 +-
 R/computePredictedValues.R                |    8 +
 R/constructGradient.R                     |    2 
 R/constructKnots.R                        |    8 -
 R/createPartition.R                       |    2 
 R/plotBeta.R                              |    2 
 R/plotGamma.R                             |    2 
 R/plotGradient.R                          |   25 +++-
 R/predict.R                               |   14 +-
 R/predictLatentFactor.R                   |   10 -
 R/prepareGradient.R                       |   19 ++-
 R/sampleMcmc.R                            |   54 ++++++--
 R/setPriors.Hmsc.R                        |   12 -
 R/setPriors.HmscRandomLevel.R             |   16 +-
 R/updateBetaLambda.R                      |    2 
 R/updateEta.R                             |   15 +-
 R/updateGamma2.R                          |   82 +++++++++----
 R/updateGammaEta.R                        |  187 +++++++++++++++++++++++-------
 R/updateLambdaPriors.R                    |    7 -
 R/updateLatentLoadingOrder.R              |only
 R/updateZ.R                               |    2 
 README.md                                 |    2 
 build/partial.rdb                         |binary
 build/vignette.rds                        |binary
 data/TD.rda                               |binary
 inst/NEWS.md                              |   54 ++++++++
 inst/doc/vignette_1_univariate.pdf        |binary
 inst/doc/vignette_2_multivariate_low.pdf  |binary
 inst/doc/vignette_3_multivariate_high.pdf |binary
 inst/doc/vignette_4_spatial.pdf           |binary
 inst/doc/vignette_5_performance.pdf       |binary
 man/Hmsc.Rd                               |    4 
 man/HmscRandomLevel.Rd                    |   55 +++++---
 man/TD.Rd                                 |    6 
 man/plotGradient.Rd                       |    8 +
 man/prepareGradient.Rd                    |    7 -
 tests/Examples/Hmsc-Ex.Rout.save          |   38 +++---
 tests/testthat/test-WAIC.R                |    2 
 tests/testthat/test-initialParameters.R   |   22 +--
 tests/testthat/test-sampling.R            |   40 +++---
 tests/testthat/test-setHmsc.R             |   68 +++++-----
 tests/testthat/test-setPriors.R           |   13 --
 vignettes/makedata.R                      |   27 +---
 vignettes/vignette_5_performance.Rmd      |   43 ++++--
 50 files changed, 802 insertions(+), 423 deletions(-)

More information about Hmsc at CRAN
Permanent link

New package fspe with initial version 0.1.0
Package: fspe
Type: Package
Title: Estimating the Number of Factors in EFA with Out-of-Sample Prediction Errors
Version: 0.1.0
Authors@R: c(person(given = "Jonas", family = "Haslbeck", role = c("aut", "cre"), email = "jonashaslbeck@gmail.com"), person(given = "Riet", family = "van Bork", email = "rietvanbork@hotmail.com", role = "ctb"))
BugReports: https://github.com/jmbh/fspe/issues
Depends: R (>= 3.5.0)
Description: Estimating the number of factors in Exploratory Factor Analysis (EFA) with out-of-sample prediction errors using a cross-validation scheme. Haslbeck & van Bork (Preprint) <https://psyarxiv.com/qktsd>.
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: psych, corpcor, GPArotation
NeedsCompilation: no
Packaged: 2021-02-23 10:02:47 UTC; jonas
Author: Jonas Haslbeck [aut, cre], Riet van Bork [ctb]
Maintainer: Jonas Haslbeck <jonashaslbeck@gmail.com>
Repository: CRAN
Date/Publication: 2021-02-24 10:00:05 UTC

More information about fspe at CRAN
Permanent link

New package flightplanning with initial version 0.8.4
Package: flightplanning
Type: Package
Title: UAV Flight Planning
Version: 0.8.4
Authors@R: c( person("Caio", "Hamamura", email = "caiohamamura@gmail.com", role = c("aut", "cre")), person("Danilo Roberti Alves de", "Almeida", email = "daniloflorestas@gmail.com", role = c("aut")), person("Daniel de Almeida", "Papa", email = "daniel.papa@embrapa.br", role = c("aut")), person("Hudson Franklin Pessoa", "Veras", email = "hudson@engeverde.com", role = c("aut")), person("Evandro Orfanó", "Figueiredo", email = "evandro.figueiredo@embrapa.br", role = c("aut")))
Description: Utility functions for creating flight plans for unmanned aerial vehicles (UAV), specially for the Litchi Hub platform. It calculates the flight and camera settings based on the camera specifications, exporting the flight plan CSV format ready to import into Litchi Hub.
Imports: graphics, grDevices, methods, rgdal, rgeos, sp
Depends: R (>= 3.0)
Suggests: testthat
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
URL: https://github.com/caiohamamura/flightplanning-R
BugReports: https://github.com/caiohamamura/flightplanning-R/issues
Author: Caio Hamamura [aut, cre], Danilo Roberti Alves de Almeida [aut], Daniel de Almeida Papa [aut], Hudson Franklin Pessoa Veras [aut], Evandro Orfanó Figueiredo [aut]
Maintainer: Caio Hamamura <caiohamamura@gmail.com>
Repository: CRAN
Repository/R-Forge/Project: flightplanning
Repository/R-Forge/Revision: 17
Repository/R-Forge/DateTimeStamp: 2021-02-23 14:15:25
Date/Publication: 2021-02-24 09:40:02 UTC
NeedsCompilation: no
Packaged: 2021-02-23 14:27:09 UTC; rforge

More information about flightplanning at CRAN
Permanent link

New package fabisearch with initial version 0.0.2.4
Package: fabisearch
Title: Change Point Detection in High-Dimensional Time Series Networks
Version: 0.0.2.4
Authors@R: c(person("Martin", "Ondrus", email = "mondrus@ualberta.ca", role = c("aut", "cre")), person("Ivor", "Cribben", email = "cribben@ualberta.ca", role = "aut"))
Description: Implementation of the Factorized Binary Search (FaBiSearch) methodology for the estimation of the number and location of multiple change points in the network (or clustering) structure of multivariate high-dimensional time series. The method is motivated by the detection of change points in functional connectivity networks for functional magnetic resonance imaging (fMRI) data. FaBiSearch uses non-negative matrix factorization (NMF), an unsupervised dimension reduction technique, and a new binary search algorithm to identify multiple change points. It also requires minimal assumptions. The main routines of the package are detect.cps(), for multiple change point detection, est.net(), for estimating a network between stationary multivariate time series, net.3dplot(), for plotting the estimated functional connectivity networks, and opt.rank(), for finding the optimal rank in NMF for a given data set. The functions have been extensively tested on simulated multivariate high-dimensional time series data and fMRI data. For details on the FaBiSearch methodology, please see Ondrus et al. (2021).
URL: https://github.com/mondrus96/FaBiSearch
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Imports: rgl, reshape2
Depends: R (>= 3.10), NMF
Packaged: 2021-02-22 01:43:01 UTC; Martin
Author: Martin Ondrus [aut, cre], Ivor Cribben [aut]
Maintainer: Martin Ondrus <mondrus@ualberta.ca>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2021-02-24 09:40:05 UTC

More information about fabisearch at CRAN
Permanent link

Package cotram updated to version 0.2-1 with previous version 0.2-0 dated 2020-03-30

Title: Count Transformation Models
Description: Count transformation models featuring parameters interpretable as discrete hazard ratios, odds ratios, reverse-time discrete hazard ratios, or transformed expectations. An appropriate data transformation for a count outcome and regression coefficients are simultaneously estimated by maximising the exact discrete log-likelihood using the computational framework provided in package 'mlt', technical details are given in Siegfried & Hothorn (2020) <DOI:10.1111/2041-210X.13383>.
Author: Sandra Siegfried [aut] (<https://orcid.org/0000-0002-7312-1001>), Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between cotram versions 0.2-0 dated 2020-03-30 and 0.2-1 dated 2021-02-24

 DESCRIPTION           |   15 ++++++++-------
 MD5                   |   30 +++++++++++++++---------------
 NAMESPACE             |    3 ++-
 R/models.R            |    1 +
 R/predict.R           |   17 ++++++++++++++++-
 build/partial.rdb     |binary
 build/vignette.rds    |binary
 inst/CITATION         |   16 ++++++++++------
 inst/NEWS.Rd          |    8 ++++++++
 inst/doc/cotram.R     |   21 +++++++++++++++++----
 inst/doc/cotram.Rnw   |   25 +++++++++++++++++++++----
 inst/doc/cotram.pdf   |binary
 man/cotram-methods.Rd |    5 +++--
 tests/confband-Ex.R   |    2 +-
 tests/predict-Ex.R    |   40 ++++++++++++++++++++++++++++++++++++++++
 vignettes/cotram.Rnw  |   25 +++++++++++++++++++++----
 16 files changed, 163 insertions(+), 45 deletions(-)

More information about cotram at CRAN
Permanent link

Package mlt updated to version 1.2-3 with previous version 1.2-2 dated 2021-02-12

Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation models via the most likely transformation approach described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between mlt versions 1.2-2 dated 2021-02-12 and 1.2-3 dated 2021-02-24

 mlt-1.2-2/mlt/tests/Examples     |only
 mlt-1.2-3/mlt/DESCRIPTION        |    8 +-
 mlt-1.2-3/mlt/MD5                |   15 ++--
 mlt-1.2-3/mlt/R/dpq_etc.R        |    4 -
 mlt-1.2-3/mlt/build/partial.rdb  |binary
 mlt-1.2-3/mlt/inst/NEWS.Rd       |   12 ++-
 mlt-1.2-3/mlt/man/R.Rd           |   68 +++++++++++++++++++
 mlt-1.2-3/mlt/man/mlt-package.Rd |   13 ++-
 mlt-1.2-3/mlt/man/predict.Rd     |  135 ++++++++++++++++++++++++++++++++++++++-
 9 files changed, 231 insertions(+), 24 deletions(-)

More information about mlt at CRAN
Permanent link

Package ISOcodes updated to version 2021.02.24 with previous version 2020.12.04 dated 2020-12-04

Title: Selected ISO Codes
Description: ISO language, territory, currency, script and character codes. Provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217 currency codes, ISO 15924 script codes, and the ISO 8859 character codes as well as the UN M.49 area codes.
Author: Christian Buchta [aut], Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

Diff between ISOcodes versions 2020.12.04 dated 2020-12-04 and 2021.02.24 dated 2021-02-24

 DESCRIPTION                    |    6 +++---
 MD5                            |   26 +++++++++++++-------------
 data/ISO_15924.rda             |binary
 data/ISO_3166_1.rda            |binary
 data/ISO_3166_2.rda            |binary
 data/ISO_3166_3.rda            |binary
 data/ISO_4217.rda              |binary
 data/ISO_4217_Historic.rda     |binary
 data/ISO_639_2.rda             |binary
 data/ISO_639_3.rda             |binary
 data/ISO_639_3_Retirements.rda |binary
 data/ISO_639_5.rda             |binary
 data/UN_M.49_Countries.rda     |binary
 data/UN_M.49_Regions.rda       |binary
 14 files changed, 16 insertions(+), 16 deletions(-)

More information about ISOcodes at CRAN
Permanent link

Package polAr (with last version 0.2.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-02-22 0.2.0.1
2020-09-14 0.2.0
2020-05-16 0.1.3

Permanent link
Package spatsoc updated to version 0.1.16 with previous version 0.1.15 dated 2020-10-21

Title: Group Animal Relocation Data by Spatial and Temporal Relationship
Description: Detects spatial and temporal groups in GPS relocations (Robitaille et al. (2020) <doi:10.1111/2041-210X.13215>). It can be used to convert GPS relocations to gambit-of-the-group format to build proximity-based social networks In addition, the randomizations function provides data-stream randomization methods suitable for GPS data.
Author: Alec L. Robitaille [aut, cre] (<https://orcid.org/0000-0002-4706-1762>), Quinn Webber [aut] (<https://orcid.org/0000-0002-0434-9360>), Eric Vander Wal [aut] (<https://orcid.org/0000-0002-8534-4317>)
Maintainer: Alec L. Robitaille <robit.alec@gmail.com>

Diff between spatsoc versions 0.1.15 dated 2020-10-21 and 0.1.16 dated 2021-02-24

 DESCRIPTION                       |    6 
 MD5                               |   76 ++---
 NEWS.md                           |    9 
 R/build_lines.R                   |   47 ++-
 R/build_polys.R                   |   70 +++-
 R/edge_dist.R                     |   77 +++--
 R/extdata.R                       |    2 
 R/get_gbi.R                       |    2 
 R/group_lines.R                   |   11 
 R/group_polys.R                   |   11 
 build/vignette.rds                |binary
 inst/doc/faq.Rmd                  |   14 
 inst/doc/faq.html                 |   14 
 inst/doc/intro-spatsoc.R          |    8 
 inst/doc/intro-spatsoc.Rmd        |    8 
 inst/doc/intro-spatsoc.html       |   70 ++--
 inst/doc/using-edge-and-dyad.html |  564 ++++++++++----------------------------
 inst/doc/using-in-sna.R           |    4 
 inst/doc/using-in-sna.Rmd         |    4 
 inst/doc/using-in-sna.html        |    4 
 man/DT.Rd                         |    2 
 man/build_lines.Rd                |   46 ++-
 man/build_polys.Rd                |   64 +++-
 man/edge_dist.Rd                  |    6 
 man/get_gbi.Rd                    |    2 
 man/group_lines.Rd                |   15 -
 man/group_polys.Rd                |   15 -
 tests/testthat/test-build-lines.R |    2 
 tests/testthat/test-build-polys.R |    2 
 tests/testthat/test-edge-dist.R   |   20 -
 tests/testthat/test-edge-nn.R     |   15 -
 tests/testthat/test-gbi.R         |    2 
 tests/testthat/test-group-lines.R |   14 
 tests/testthat/test-group-polys.R |    2 
 tests/testthat/test-pts.R         |   19 -
 tests/testthat/test-random.R      |   65 ++--
 vignettes/faq.Rmd                 |   14 
 vignettes/intro-spatsoc.Rmd       |    8 
 vignettes/using-in-sna.Rmd        |    4 
 39 files changed, 630 insertions(+), 688 deletions(-)

More information about spatsoc at CRAN
Permanent link

Package rdrobust updated to version 1.0.1 with previous version 0.99.9 dated 2020-08-26

Title: Robust Data-Driven Statistical Inference in Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico <sebastian.calonico@columbia.edu>, Matias D. Cattaneo <cattaneo@princeton.edu>, Max H. Farrell <max.farrell@chicagobooth.edu>, Rocio Titiunik <titiunik@princeton.edu>
Maintainer: Sebastian Calonico <sebastian.calonico@columbia.edu>

Diff between rdrobust versions 0.99.9 dated 2020-08-26 and 1.0.1 dated 2021-02-24

 DESCRIPTION             |   10 ++---
 MD5                     |   18 ++++-----
 NAMESPACE               |    1 
 R/functions.R           |    9 +++-
 R/rdbwselect.R          |   71 ++++++++++++++++++++++++-------------
 R/rdplot.R              |   91 +++++++++++++++++++++++++++++++-----------------
 R/rdrobust.R            |   35 +++++++++++-------
 man/rdbwselect.Rd       |    3 +
 man/rdplot.Rd           |   14 ++++++-
 man/rdrobust-package.Rd |    4 +-
 10 files changed, 166 insertions(+), 90 deletions(-)

More information about rdrobust at CRAN
Permanent link

Package RcppSimdJson updated to version 0.1.5 with previous version 0.1.4 dated 2021-02-12

Title: 'Rcpp' Bindings for the 'simdjson' Header-Only Library for 'JSON' Parsing
Description: The 'JSON' format is ubiquitous for data interchange, and the 'simdjson' library written by Daniel Lemire (and many contributors) provides a high-performance parser for these files which by relying on parallel 'SIMD' instruction manages to parse these files as faster than disk speed. See the <arXiv:1902.08318> paper for more details about 'simdjson'. This package parses 'JSON' from string, file, or remote URLs under a variety of settings.
Author: Dirk Eddelbuettel, Brendan Knapp
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppSimdJson versions 0.1.4 dated 2021-02-12 and 0.1.5 dated 2021-02-24

 ChangeLog                                           |   21 ++++++++++++++-
 DESCRIPTION                                         |    8 ++---
 MD5                                                 |   20 +++++++-------
 R/utils.R                                           |   11 ++++---
 R/validateJSON.R                                    |    2 -
 build/partial.rdb                                   |binary
 inst/NEWS.Rd                                        |    8 +++++
 inst/include/RcppSimdJson/deserialize.hpp           |   28 ++++++++++----------
 inst/include/RcppSimdJson/deserialize/dataframe.hpp |    4 +-
 inst/include/RcppSimdJson/deserialize/vector.hpp    |    4 +-
 inst/include/RcppSimdJson/utils.hpp                 |    2 -
 11 files changed, 68 insertions(+), 40 deletions(-)

More information about RcppSimdJson at CRAN
Permanent link

Package dfadjust updated to version 1.0.2 with previous version 1.0.1 dated 2019-12-16

Title: Degrees of Freedom Adjustment for Robust Standard Errors
Description: Computes small-sample degrees of freedom adjustment for heteroskedasticity robust standard errors, and for clustered standard errors in linear regression. See Imbens and Kolesár (2016) <doi:10.1162/REST_a_00552> for a discussion of these adjustments.
Author: Michal Kolesár [aut, cre] (<https://orcid.org/0000-0002-2482-7796>)
Maintainer: Michal Kolesár <kolesarmi@googlemail.com>

Diff between dfadjust versions 1.0.1 dated 2019-12-16 and 1.0.2 dated 2021-02-24

 DESCRIPTION                      |    8 +--
 MD5                              |   24 +++++------
 NEWS.md                          |    9 +++-
 R/ols.R                          |   24 +++++++----
 build/partial.rdb                |only
 build/vignette.rds               |binary
 inst/doc/dfadjust.Rmd            |   21 +++++----
 inst/doc/dfadjust.pdf            |binary
 man/dfadjustSE.Rd                |    7 +--
 tests/testthat/test-hc2-check.R  |    6 +-
 tests/testthat/test_clustervar.R |only
 vignettes/auto/library.el        |    2 
 vignettes/dfadjust.Rmd           |   21 +++++----
 vignettes/library.bib            |   85 ++++++++++++++++++++-------------------
 14 files changed, 121 insertions(+), 86 deletions(-)

More information about dfadjust at CRAN
Permanent link

Package ARTool updated to version 0.11.0 with previous version 0.10.8 dated 2020-10-31

Title: Aligned Rank Transform
Description: The Aligned Rank Transform for nonparametric factorial ANOVAs as described by J. O. Wobbrock, L. Findlater, D. Gergle, & J. J. Higgins, "The Aligned Rank Transform for nonparametric factorial analyses using only ANOVA procedures", CHI 2011 <DOI:10.1145/1978942.1978963>.
Author: Matthew Kay [aut, cre], Lisa A. Elkin [aut], James J. Higgins [aut], Jacob O. Wobbrock [aut]
Maintainer: Matthew Kay <mjskay@northwestern.edu>

Diff between ARTool versions 0.10.8 dated 2020-10-31 and 0.11.0 dated 2021-02-24

 DESCRIPTION                             |   22 -
 MD5                                     |   89 ++--
 NAMESPACE                               |    7 
 NEWS.md                                 |  179 ++++----
 R/anova.art.R                           |  414 ++++++++++----------
 R/art.R                                 |  581 ++++++++++++++--------------
 R/art.con.R                             |only
 R/art.con.internal.R                    |only
 R/artlm.R                               |  168 ++++----
 R/artlm.con.R                           |only
 R/data.R                                |  504 +++++++++++++-----------
 R/flat.anova.R                          |  222 +++++-----
 R/global.variables.R                    |   18 
 R/internal.R                            |  367 +++++++++--------
 R/release.questions.R                   |   20 
 README.md                               |   30 +
 build/vignette.rds                      |binary
 data/ElkinAB.RData                      |only
 data/ElkinABC.RData                     |only
 inst/CITATION                           |   81 ++-
 inst/doc/art-contrasts.R                |  159 ++++---
 inst/doc/art-contrasts.Rmd              |  661 +++++++++++++++++---------------
 inst/doc/art-contrasts.html             |  611 ++++++++++-------------------
 inst/doc/art-effect-size.R              |    2 
 inst/doc/art-effect-size.Rmd            |  358 ++++++++---------
 inst/doc/art-effect-size.html           |  352 +++--------------
 man/ElkinAB.Rd                          |only
 man/ElkinABC.Rd                         |only
 man/Higgins1990Table1.Rd                |   86 ++--
 man/Higgins1990Table1.art.Rd            |   68 +--
 man/Higgins1990Table5.Rd                |  102 ++--
 man/Higgins1990Table5.art.Rd            |   68 +--
 man/HigginsABC.Rd                       |   76 +--
 man/HigginsABC.art.Rd                   |   86 ++--
 man/InteractionTestData.Rd              |   35 -
 man/anova.art.Rd                        |  206 ++++-----
 man/art.Rd                              |  318 ++++++++-------
 man/art.con.Rd                          |only
 man/artlm.Rd                            |  114 ++---
 man/artlm.con.Rd                        |only
 man/summary.art.Rd                      |   82 +--
 tests/testthat.R                        |    8 
 tests/testthat/test.anova.art.R         |  180 ++++----
 tests/testthat/test.art.R               |  564 +++++++++++++--------------
 tests/testthat/test.art.con.R           |only
 tests/testthat/test.artlm.R             |   96 ++--
 tests/testthat/test.artlm.con.R         |only
 tests/testthat/test.parse.art.formula.R |  192 ++++-----
 tests/testthat/test.summary.art.R       |   38 -
 vignettes/art-contrasts.Rmd             |  661 +++++++++++++++++---------------
 vignettes/art-effect-size.Rmd           |  358 ++++++++---------
 51 files changed, 4045 insertions(+), 4138 deletions(-)

More information about ARTool at CRAN
Permanent link

Package argo updated to version 3.0.1 with previous version 2.0.2 dated 2020-04-25

Title: Accurate Estimation of Influenza Epidemics using Google Search Data
Description: Augmented Regression with General Online data (ARGO) for accurate estimation of influenza epidemics in United States on national level, regional level and state level. It replicates the method introduced in paper Yang, S., Santillana, M. and Kou, S.C. (2015) <doi:10.1073/pnas.1515373112>; Ning, S., Yang, S. and Kou, S.C. (2019) <doi:10.1038/s41598-019-41559-6>; Yang, S., Ning, S. and Kou, S.C. (2021) <doi:10.1038/s41598-021-83084-5>.
Author: Shaoyang Ning, Shihao Yang, S. C. Kou
Maintainer: Shihao Yang <shihao.yang@isye.gatech.edu>

Diff between argo versions 2.0.2 dated 2020-04-25 and 3.0.1 dated 2021-02-24

 DESCRIPTION                          |   12 -
 MD5                                  |   35 +--
 NAMESPACE                            |    1 
 R/constructor.R                      |    2 
 R/dataparsing.R                      |   22 -
 R/main.R                             |  391 +++++++++++++++++++++++++++++++++++
 R/plot.R                             |    3 
 R/summary.R                          |    6 
 README                               |    2 
 man/argo.Rd                          |   15 -
 man/argo2_main.Rd                    |    9 
 man/argox_main.Rd                    |only
 man/boot_re.Rd                       |   15 +
 man/bootstrap_relative_efficiency.Rd |   14 -
 man/load_data.Rd                     |   17 -
 man/load_reg_data.Rd                 |    9 
 man/parse_gt_weekly.Rd               |    2 
 man/parse_unrevised_ili.Rd           |    2 
 man/summary_argo.Rd                  |   11 
 19 files changed, 500 insertions(+), 68 deletions(-)

More information about argo at CRAN
Permanent link

Package UniDOE (with last version 1.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-04-18 1.0.2
2017-12-08 1.0.1
2017-11-29 1.0

Permanent link
Package rmetasim (with last version 3.1.14) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-02-07 3.1.14
2020-01-29 3.1.13
2018-02-15 3.1.7
2018-01-04 3.1.6
2017-11-07 3.1.5
2017-09-19 3.1.3
2017-09-16 3.1.2
2016-04-09 3.0.5
2016-04-06 3.0.4
2016-03-29 3.0.2
2016-02-26 2.0.4.1
2014-06-01 2.0.4
2014-05-27 2.0.3

Permanent link
Package divDyn (with last version 0.8.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-06-12 0.8.0
2019-02-19 0.7.1
2019-01-08 0.7.0
2018-10-08 0.6.1

Permanent link
Package sppmix (with last version 1.0.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-10-14 1.0.2.1
2017-11-17 1.0.2
2017-03-31 1.0.1
2017-02-23 1.0.0.0

Permanent link
Package blaster (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-02-10 1.0

Permanent link
Package RSNPset (with last version 0.5.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-12-14 0.5.3
2017-02-21 0.5.2
2015-11-20 0.5
2015-02-11 0.4
2014-12-16 0.3

Permanent link
Package PivotalR (with last version 0.1.18.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-11-16 0.1.18.4
2019-01-05 0.1.18.3.1
2017-02-13 0.1.18.3
2016-10-22 0.1.18.2
2015-01-03 0.1.17.45

Permanent link
Package ProcData (with last version 0.2.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-05-12 0.2.5

Permanent link
Package sharpeRratio updated to version 1.4.2 with previous version 1.4.1 dated 2020-05-15

Title: Moment-Free Estimation of Sharpe Ratios
Description: An efficient moment-free estimator of the Sharpe ratio, or signal-to-noise ratio, for heavy-tailed data (see <arXiv:1505.01333>).
Author: Damien Challet
Maintainer: Damien Challet <damien.challet@gmail.com>

Diff between sharpeRratio versions 1.4.1 dated 2020-05-15 and 1.4.2 dated 2021-02-24

 DESCRIPTION         |    8 ++++----
 MD5                 |    6 +++---
 NEWS                |    9 +++++++++
 src/num_records.cpp |   11 ++++++-----
 4 files changed, 22 insertions(+), 12 deletions(-)

More information about sharpeRratio at CRAN
Permanent link

Package myTAI updated to version 0.9.3 with previous version 0.9.2 dated 2020-01-10

Title: Evolutionary Transcriptomics
Description: Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2017) <doi:10.1093/bioinformatics/btx835>). The aim of this tool is to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest (Drost et al. (2016) <doi:10.1101/051565>).
Author: Hajk-Georg Drost [aut, cre] (<https://orcid.org/0000-0002-1567-306X>)
Maintainer: Hajk-Georg Drost <hajk-georg.drost@tuebingen.mpg.de>

Diff between myTAI versions 0.9.2 dated 2020-01-10 and 0.9.3 dated 2021-02-24

 myTAI-0.9.2/myTAI/tests/testthat/test-taxid.R                  |only
 myTAI-0.9.3/myTAI/DESCRIPTION                                  |   23 
 myTAI-0.9.3/myTAI/MD5                                          |   75 -
 myTAI-0.9.3/myTAI/NEWS.md                                      |   17 
 myTAI-0.9.3/myTAI/R/MatchMap.R                                 |    2 
 myTAI-0.9.3/myTAI/R/PlotSignature.R                            |    2 
 myTAI-0.9.3/myTAI/R/is.ExpressionSet.R                         |    2 
 myTAI-0.9.3/myTAI/R/myTAI-package.R                            |only
 myTAI-0.9.3/myTAI/R/pStrata.R                                  |    2 
 myTAI-0.9.3/myTAI/R/tf.R                                       |    4 
 myTAI-0.9.3/myTAI/README.md                                    |   57 
 myTAI-0.9.3/myTAI/build/vignette.rds                           |binary
 myTAI-0.9.3/myTAI/inst/CITATION                                |    8 
 myTAI-0.9.3/myTAI/inst/doc/Advanced.html                       |  240 +--
 myTAI-0.9.3/myTAI/inst/doc/Enrichment.Rmd                      |    2 
 myTAI-0.9.3/myTAI/inst/doc/Enrichment.html                     |  256 +--
 myTAI-0.9.3/myTAI/inst/doc/Expression.Rmd                      |    4 
 myTAI-0.9.3/myTAI/inst/doc/Expression.html                     |  646 ++++-----
 myTAI-0.9.3/myTAI/inst/doc/Intermediate.R                      |  282 +--
 myTAI-0.9.3/myTAI/inst/doc/Intermediate.Rmd                    |   62 
 myTAI-0.9.3/myTAI/inst/doc/Intermediate.html                   |  478 +++---
 myTAI-0.9.3/myTAI/inst/doc/Introduction.R                      |  310 ++--
 myTAI-0.9.3/myTAI/inst/doc/Introduction.Rmd                    |   46 
 myTAI-0.9.3/myTAI/inst/doc/Introduction.html                   |  711 +++++-----
 myTAI-0.9.3/myTAI/inst/doc/Taxonomy.R                          |   14 
 myTAI-0.9.3/myTAI/inst/doc/Taxonomy.Rmd                        |   33 
 myTAI-0.9.3/myTAI/inst/doc/Taxonomy.html                       |  128 +
 myTAI-0.9.3/myTAI/man/PlotSignature.Rd                         |    2 
 myTAI-0.9.3/myTAI/man/tf.Rd                                    |    4 
 myTAI-0.9.3/myTAI/src/code.cpp                                 |only
 myTAI-0.9.3/myTAI/src/myTAI_init.c                             |    5 
 myTAI-0.9.3/myTAI/src/rcpp_funcs.cpp                           |    9 
 myTAI-0.9.3/myTAI/tests/testthat/test-EarlyConservationTest.R  |   56 
 myTAI-0.9.3/myTAI/tests/testthat/test-REMatrix.R               |    4 
 myTAI-0.9.3/myTAI/tests/testthat/test-ReductiveHourglassTest.R |   79 -
 myTAI-0.9.3/myTAI/vignettes/Enrichment.Rmd                     |    2 
 myTAI-0.9.3/myTAI/vignettes/Expression.Rmd                     |    4 
 myTAI-0.9.3/myTAI/vignettes/Intermediate.Rmd                   |   62 
 myTAI-0.9.3/myTAI/vignettes/Introduction.Rmd                   |   46 
 myTAI-0.9.3/myTAI/vignettes/Taxonomy.Rmd                       |   33 
 40 files changed, 1924 insertions(+), 1786 deletions(-)

More information about myTAI at CRAN
Permanent link

Package gbm.auto updated to version 1.4.1 with previous version 1.4.0 dated 2021-02-15

Title: Automated Boosted Regression Tree Modelling and Mapping Suite
Description: Automates delta log-normal boosted regression tree abundance prediction. Loops through parameters provided (LR (learning rate), TC (tree complexity), BF (bag fraction)), chooses best, simplifies, & generates line, dot & bar plots, & outputs these & predictions & a report, makes predicted abundance maps, and Unrepresentativeness surfaces. Package core built around 'gbm' (gradient boosting machine) functions in 'dismo' (Hijmans, Phillips, Leathwick & Jane Elith, 2020 & ongoing), itself built around 'gbm' (Greenwell, Boehmke, Cunningham & Metcalfe, 2020 & ongoing, originally by Ridgeway). Indebted to Elith/Leathwick/Hastie 2008 'Working Guide' <doi:10.1111/j.1365-2656.2008.01390.x>; workflow follows Appendix S3. See <http://www.simondedman.com/> for published guides and papers using this package.
Author: Simon Dedman [aut, cre], Hans Gerritsen [aut]
Maintainer: Simon Dedman <simondedman@gmail.com>

Diff between gbm.auto versions 1.4.0 dated 2021-02-15 and 1.4.1 dated 2021-02-24

 DESCRIPTION        |    6 
 MD5                |   24 +--
 NEWS.md            |    3 
 R/gbm.auto.R       |    3 
 R/gbm.basemap.R    |    3 
 R/gbm.bfcheck.R    |    5 
 R/gbm.cons.R       |  391 ++++++++++++++++++++++++++---------------------------
 R/gbm.loop.R       |    3 
 man/gbm.auto.Rd    |    2 
 man/gbm.basemap.Rd |    2 
 man/gbm.bfcheck.Rd |    2 
 man/gbm.cons.Rd    |    3 
 man/gbm.loop.Rd    |    2 
 13 files changed, 223 insertions(+), 226 deletions(-)

More information about gbm.auto at CRAN
Permanent link

Package diathor updated to version 0.0.4 with previous version 0.0.1 dated 2020-11-26

Title: Calculate Ecological Information and Diatom Based Indices
Description: Calculates ecological information and biotic indices for diatoms in a sample. It includes number/shape of chloroplasts diversity indices, size classes, ecological guilds, and multiple biotic indices. It outputs both a dataframe with all the results and plots of all the obtained data in a defined output folder. Sample data was taken from Nicolosi Gelis, Cochero & Gómez (2020, <doi:10.1016/j.ecolind.2019.105951>). The package uses the 'Diat.Barcode' database to calculate morphological and ecological information by Rimet & Couchez (2012, <doi:10.1051/kmae/2012018>), and calculates the DES index by Descy (1979, <http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=PASCAL8060205402>), the EPID index by Dell'Uomo (1996, ISBN: 3950009002), the IDAP index by Prygiel & Coste (1993, <doi:10.1007/BF00028033>), the ID-CH index by Hürlimann & Niederhauser (2007, <https://www.bafu.admin.ch/bafu/fr/home/themes/eaux/publications/publications-eaux/methodes-analyse-appreciation-cours-eau-diatomees.html>), the IDP index by Gómez & Licursi (2001, <doi:10.1023/A:1011415209445>), the ILM index by Leclercq & Maquet (1987, <http://www.vliz.be/imisdocs/publications/286641.pdf>), the IPS index by Coste (1982, <https://www.oieau.org/eaudoc/notice/ETUDE-DES-METHODES-BIOLOGIQUES-DAPPRECIATION-QUANTITATIVE-DE-LA-QUALITE-DES-EAUX>), the LOBO index by Lobo, Callegaro, & Bender (2002, ISBN:9788585869908), the SLA by Sládeček (1986, <doi:10.1002/aheh.19860140519>), the TDI index by Kelly, & Whitton (1995, <doi:10.1007/BF00003802>), and the SPEAR(herbicide) index by Wood, Mitrovic, Lim, Warne, Dunlop, & Kefford (2019, <doi:10.1016/j.ecolind.2018.12.035>).
Author: María Mercedes Nicolosi Gelis [aut] (<https://orcid.org/0000-0001-6324-7930>), María Belén Sathicq [aut] (<https://orcid.org/0000-0002-3534-8950>), Joaquín Cochero [cre] (<https://orcid.org/0000-0003-3957-6819>)
Maintainer: Joaquín Cochero <jcochero@ilpla.edu.ar>

Diff between diathor versions 0.0.1 dated 2020-11-26 and 0.0.4 dated 2021-02-24

 DESCRIPTION            |    9 -
 MD5                    |   42 ++---
 NAMESPACE              |    4 
 R/data.R               |   14 -
 R/diat_findAcronyms.R  |   31 ++-
 R/diat_guilds.R        |  121 +++++++--------
 R/diat_loadData.R      |   56 +++++--
 R/diat_morpho.R        |  155 +++++++------------
 R/diat_size.R          |  101 +++++--------
 R/diat_spear.R         |   31 ++-
 R/diat_vandam.R        |  380 +++++++++++++++++++++----------------------------
 R/diathorAll.R         |   13 -
 README.md              |  124 +++++++++++++++
 data/acronyms.rda      |binary
 data/spear.rda         |binary
 man/dbc_offline.Rd     |    2 
 man/diat_sampleData.Rd |    2 
 man/idap.Rd            |    2 
 man/idp.Rd             |    2 
 man/sla.Rd             |    2 
 man/spear.Rd           |    2 
 man/tdi.Rd             |    2 
 22 files changed, 572 insertions(+), 523 deletions(-)

More information about diathor at CRAN
Permanent link

Tue, 23 Feb 2021

Package localScore updated to version 1.0.5 with previous version 1.0.4 dated 2021-02-23

Title: Package for Sequence Analysis by Local Score
Description: Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.archives-ouvertes.fr/hal-00714174> ; S. Karlin and S. Altschul (1990) <https://www.pnas.org/content/87/6/2264> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.archives-ouvertes.fr/hal-00937529v1> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).
Author: Sebastian Simon [aut], David Robelin [aut, cre], Sabine Mercier [aut], Sebastien Dejean [aut], The authors of Eigen the library for the included version of Eigen [cph]
Maintainer: David Robelin <david.robelin@inrae.fr>

Diff between localScore versions 1.0.4 dated 2021-02-23 and 1.0.5 dated 2021-02-23

 DESCRIPTION                                 |    6 +++---
 MD5                                         |    6 +++---
 inst/doc/localScorePackageDocumentation.pdf |binary
 src/pValueMethods.cpp                       |   12 ++++++------
 4 files changed, 12 insertions(+), 12 deletions(-)

More information about localScore at CRAN
Permanent link

Package SEMsens updated to version 1.0.1 with previous version 0.2.6 dated 2020-07-18

Title: A Tool for Sensitivity Analysis in Structural Equation Modeling
Description: Perform sensitivity analysis in structural equation modeling using meta-heuristic optimization methods (e.g., ant colony optimization and others). The references for the proposed methods are: (1) Leite, W., & Shen, Z., Marcoulides, K., Fish, C., & Harring, J. (in press). Using ant colony optimization for sensitivity analysis in structural equation modeling. Structural Equation Modeling: A Multidisciplinary Journal. (2) Harring, J. R., McNeish, D. M., & Hancock, G. R. (2017) <doi:10.1080/10705511.2018.1506925>; (3) Socha, K., & Dorigo, M. (2008) <doi:10.1016/j.ejor.2006.06.046>. We also thank Dr. Krzysztof Socha for sharing his research on ant colony optimization algorithm with continuous domains and associated R code, which provided the base for the development of this package.
Author: Walter Leite [aut, cre], Zuchao Shen [aut], Gail Fish [ctb], YongSeok Lee [ctb], Sanaz Nazari [ctb], Jia Quan [ctb], Eric Wright [ctb], Huibin Zhang [ctb]
Maintainer: Walter Leite <walter.leite@coe.ufl.edu>

Diff between SEMsens versions 0.2.6 dated 2020-07-18 and 1.0.1 dated 2021-02-23

 SEMsens-0.2.6/SEMsens/inst/doc/SEMsens.html                 |only
 SEMsens-1.0.1/SEMsens/DESCRIPTION                           |   41 +-
 SEMsens-1.0.1/SEMsens/MD5                                   |   46 +-
 SEMsens-1.0.1/SEMsens/NEWS.md                               |   17 
 SEMsens-1.0.1/SEMsens/R/SEMsens-package.R                   |   10 
 SEMsens-1.0.1/SEMsens/R/gen.sens.pars.R                     |   12 
 SEMsens-1.0.1/SEMsens/R/sa.aco.R                            |  242 +++++++-----
 SEMsens-1.0.1/SEMsens/R/sens.tables.R                       |   90 +++-
 SEMsens-1.0.1/SEMsens/R/smith19.R                           |only
 SEMsens-1.0.1/SEMsens/build/vignette.rds                    |binary
 SEMsens-1.0.1/SEMsens/data                                  |only
 SEMsens-1.0.1/SEMsens/inst/doc/Hom-vignette.R               |only
 SEMsens-1.0.1/SEMsens/inst/doc/Hom-vignette.Rmd             |only
 SEMsens-1.0.1/SEMsens/inst/doc/Hom-vignette.pdf             |only
 SEMsens-1.0.1/SEMsens/inst/doc/SEMsens.R                    |   61 +--
 SEMsens-1.0.1/SEMsens/inst/doc/SEMsens.Rmd                  |   88 ++--
 SEMsens-1.0.1/SEMsens/inst/doc/SEMsens.pdf                  |only
 SEMsens-1.0.1/SEMsens/inst/doc/Smith12vignette.R            |only
 SEMsens-1.0.1/SEMsens/inst/doc/Smith12vignette.Rmd          |only
 SEMsens-1.0.1/SEMsens/inst/doc/Smith12vignette.pdf          |only
 SEMsens-1.0.1/SEMsens/inst/doc/Smith19_6phantom3.R          |only
 SEMsens-1.0.1/SEMsens/inst/doc/Smith19_6phantom3.Rmd        |only
 SEMsens-1.0.1/SEMsens/inst/doc/Smith19_6phantom3.pdf        |only
 SEMsens-1.0.1/SEMsens/man/SEMsens-package.Rd                |   10 
 SEMsens-1.0.1/SEMsens/man/gen.sens.pars.Rd                  |   26 -
 SEMsens-1.0.1/SEMsens/man/sa.aco.Rd                         |  172 +++++---
 SEMsens-1.0.1/SEMsens/man/sens.tables.Rd                    |   28 +
 SEMsens-1.0.1/SEMsens/man/smith19.use.Rd                    |only
 SEMsens-1.0.1/SEMsens/vignettes/Hom-vignette.Rmd            |only
 SEMsens-1.0.1/SEMsens/vignettes/SEMsens.Rmd                 |   88 ++--
 SEMsens-1.0.1/SEMsens/vignettes/Smith12vignette.Rmd         |only
 SEMsens-1.0.1/SEMsens/vignettes/Smith19_6phantom3.Rmd       |only
 SEMsens-1.0.1/SEMsens/vignettes/smith19_6_my.sa.table.rdata |only
 33 files changed, 613 insertions(+), 318 deletions(-)

More information about SEMsens at CRAN
Permanent link

Package saemix updated to version 2.4 with previous version 2.3 dated 2019-12-06

Title: Stochastic Approximation Expectation Maximization (SAEM) Algorithm
Description: The SAEMIX package implements the Stochastic Approximation EM algorithm for parameter estimation in (non)linear mixed effects models. The SAEM algorithm: - computes the maximum likelihood estimator of the population parameters, without any approximation of the model (linearisation, quadrature approximation,...), using the Stochastic Approximation Expectation Maximization (SAEM) algorithm, - provides standard errors for the maximum likelihood estimator - estimates the conditional modes, the conditional means and the conditional standard deviations of the individual parameters, using the Hastings-Metropolis algorithm. Several applications of SAEM in agronomy, animal breeding and PKPD analysis have been published by members of the Monolix group. Documentation about 'saemix' is provided by a comprehensive user guide in the inst folder, and a reference concerning the methods is the paper by Comets, Lavenu and Lavielle (2017, <doi:10.18637/jss.v080.i03>). See 'citation("saemix")' for details.
Author: Emmanuelle Comets [aut, cre] (<https://orcid.org/0000-0002-9150-9886>), Audrey Lavenu [ctb], Marc Lavielle [ctb], Maud Delattre [ctb]
Maintainer: Emmanuelle Comets <emmanuelle.comets@inserm.fr>

Diff between saemix versions 2.3 dated 2019-12-06 and 2.4 dated 2021-02-23

 saemix-2.3/saemix/man/saemix-package.Rd        |only
 saemix-2.3/saemix/man/z[-methods.Rd            |only
 saemix-2.3/saemix/man/z[_--methods.Rd          |only
 saemix-2.4/saemix/CHANGES                      |   16 +
 saemix-2.4/saemix/DESCRIPTION                  |   37 +-
 saemix-2.4/saemix/MD5                          |   85 ++---
 saemix-2.4/saemix/NAMESPACE                    |   14 
 saemix-2.4/saemix/R/SaemixData.R               |   89 +++--
 saemix-2.4/saemix/R/SaemixModel.R              |   39 +-
 saemix-2.4/saemix/R/SaemixObject.R             |  373 +++++++++++++++++++-----
 saemix-2.4/saemix/R/SaemixRes.R                |  223 +++++++++++++-
 saemix-2.4/saemix/R/aaa_generics.R             |  388 ++++++++++++++++++++++++-
 saemix-2.4/saemix/R/compute_LL.R               |   22 +
 saemix-2.4/saemix/R/func_FIM.R                 |  102 +++++-
 saemix-2.4/saemix/R/func_aux.R                 |  338 +--------------------
 saemix-2.4/saemix/R/func_diagnostics.R         |only
 saemix-2.4/saemix/R/func_distcond.R            |  287 +++++++++++-------
 saemix-2.4/saemix/R/func_estimParam.R          |only
 saemix-2.4/saemix/R/func_plots.R               |  122 +++++--
 saemix-2.4/saemix/R/func_simulations.R         |    3 
 saemix-2.4/saemix/R/main.R                     |  182 ++++++-----
 saemix-2.4/saemix/R/main_initialiseMainAlgo.R  |   16 -
 saemix-2.4/saemix/R/main_mstep.R               |    2 
 saemix-2.4/saemix/R/zzz.R                      |    2 
 saemix-2.4/saemix/man/PD1.saemix.Rd            |   93 ++---
 saemix-2.4/saemix/man/SaemixData-class.Rd      |    2 
 saemix-2.4/saemix/man/SaemixRes-class.Rd       |   18 -
 saemix-2.4/saemix/man/conddist.saemix.Rd       |   47 +--
 saemix-2.4/saemix/man/cow.saemix.Rd            |   83 ++---
 saemix-2.4/saemix/man/createSaemixObject.Rd    |only
 saemix-2.4/saemix/man/initialize-methods.Rd    |    2 
 saemix-2.4/saemix/man/kurtosis.Rd              |only
 saemix-2.4/saemix/man/llis.saemix.Rd           |    1 
 saemix-2.4/saemix/man/logLik.Rd                |   12 
 saemix-2.4/saemix/man/map.saemix.Rd            |    2 
 saemix-2.4/saemix/man/mydiag.Rd                |only
 saemix-2.4/saemix/man/oxboys.saemix.Rd         |   72 ++--
 saemix-2.4/saemix/man/predict-methods.Rd       |    2 
 saemix-2.4/saemix/man/replaceData.Rd           |only
 saemix-2.4/saemix/man/saemix.Rd                |   16 -
 saemix-2.4/saemix/man/saemix.internal.Rd       |   24 +
 saemix-2.4/saemix/man/saemixControl.Rd         |    2 
 saemix-2.4/saemix/man/saemixpredict.newdata.Rd |only
 saemix-2.4/saemix/man/skewness.Rd              |only
 saemix-2.4/saemix/man/summary-methods.Rd       |    5 
 saemix-2.4/saemix/man/testnpde.Rd              |   18 -
 saemix-2.4/saemix/man/theo.saemix.Rd           |  169 +++++-----
 saemix-2.4/saemix/man/vcov.Rd                  |    4 
 saemix-2.4/saemix/man/yield.saemix.Rd          |  100 ++----
 49 files changed, 1913 insertions(+), 1099 deletions(-)

More information about saemix at CRAN
Permanent link

Package RcmdrPlugin.UCA updated to version 4.3-3 with previous version 4.2-6 dated 2018-12-30

Title: UCA Rcmdr Plug-in
Description: Some extensions to Rcmdr (R Commander), randomness test, variance test for one normal sample and predictions using active model, made by R-UCA project and used in teaching statistics at University of Cadiz (UCA).
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>

Diff between RcmdrPlugin.UCA versions 4.2-6 dated 2018-12-30 and 4.3-3 dated 2021-02-23

 ChangeLog                                   |    3 
 DESCRIPTION                                 |   18 
 MD5                                         |   34 -
 NAMESPACE                                   |    4 
 R/RcmdrPlugin.UCA.R                         |  126 +++---
 build/vignette.rds                          |binary
 inst/doc/additions.R                        |only
 inst/doc/additions.html                     |  541 +++++++++++++++++++--------
 inst/doc/adiciones.R                        |only
 inst/doc/adiciones.html                     |  561 ++++++++++++++++++++--------
 inst/etc/menus.txt                          |    8 
 inst/po/es/LC_MESSAGES/R-RcmdrPlugin.UCA.mo |binary
 man/RcmdrPlugin.UCA-package.Rd              |    6 
 man/RcmdrPlugin.UCA.es-package.Rd           |    6 
 man/paretochartMenu.Rd                      |only
 man/paretochartMenu.es.Rd                   |only
 man/sigmaMenu.es.Rd                         |    6 
 po/R-RcmdrPlugin.UCA-es.mo                  |binary
 po/R-RcmdrPlugin.UCA-es.po                  |   35 +
 po/R-RcmdrPlugin.UCA.pot                    |   31 +
 20 files changed, 982 insertions(+), 397 deletions(-)

More information about RcmdrPlugin.UCA at CRAN
Permanent link

Package CSTools updated to version 4.0.0 with previous version 3.1.0 dated 2020-07-02

Title: Assessing Skill of Climate Forecasts on Seasonal-to-Decadal Timescales
Description: Exploits dynamical seasonal forecasts in order to provide information relevant to stakeholders at the seasonal timescale. The package contains process-based methods for forecast calibration, bias correction, statistical and stochastic downscaling, optimal forecast combination and multivariate verification, as well as basic and advanced tools to obtain tailored products. This package was developed in the context of the ERA4CS project MEDSCOPE and the H2020 S2S4E project. Doblas-Reyes et al. (2005) <doi:10.1111/j.1600-0870.2005.00104.x>. Mishra et al. (2018) <doi:10.1007/s00382-018-4404-z>. Sanchez-Garcia et al. (2019) <doi:10.5194/asr-16-165-2019>. Straus et al. (2007) <doi:10.1175/JCLI4070.1>. Terzago et al. (2018) <doi:10.5194/nhess-18-2825-2018>. Torralba et al. (2017) <doi:10.1175/JAMC-D-16-0204.1>. D'Onofrio et al. (2014) <doi:10.1175/JHM-D-13-096.1>. Verfaillie et al. (2017) <doi:10.5194/gmd-10-4257-2017>. Van Schaeybroeck et al. (2019) <doi:10.1016/B978-0-12-812372-0.00010-8>. Yiou et al. (2013) <doi:10.1007/s00382-012-1626-3>.
Author: Nuria Perez-Zanon [aut, cre] (<https://orcid.org/0000-0001-8568-3071>), Louis-Philippe Caron [aut] (<https://orcid.org/0000-0001-5221-0147>), Carmen Alvarez-Castro [aut] (<https://orcid.org/0000-0002-9958-010X>), Lauriane Batte [aut], Jost von Hardenberg [aut] (<https://orcid.org/0000-0002-5312-8070>), Llorenç LLedo [aut], Nicolau Manubens [aut], Eroteida Sanchez-Garcia [aut], Bert van Schaeybroeck [aut], Veronica Torralba [aut], Deborah Verfaillie [aut], Filippo Cali Quaglia [ctb], Maria M. Chaves-Montero [ctb], Chihchung Chou [ctb], Nicola Cortesi [ctb], Susanna Corti [ctb], Paolo Davini [ctb], Gildas Dayon [ctb], Marta Dominguez [ctb], Federico Fabiano [ctb], Ignazio Giuntoli [ctb], Raul Marcos [ctb], Paola Marson [ctb], Niti Mishra [ctb], Jesus Peña [ctb], Francesc Roura-Adserias [ctb], Silvia Terzago [ctb], Danila Volpi [ctb], BSC-CNS [cph]
Maintainer: Nuria Perez-Zanon <nuria.perez@bsc.es>

Diff between CSTools versions 3.1.0 dated 2020-07-02 and 4.0.0 dated 2021-02-23

 CSTools-3.1.0/CSTools/data/areave_data.RData                                         |only
 CSTools-3.1.0/CSTools/man/areave_data.Rd                                             |only
 CSTools-4.0.0/CSTools/DESCRIPTION                                                    |   27 
 CSTools-4.0.0/CSTools/MD5                                                            |  220 +
 CSTools-4.0.0/CSTools/NAMESPACE                                                      |   28 
 CSTools-4.0.0/CSTools/NEWS.md                                                        |   33 
 CSTools-4.0.0/CSTools/R/AnalogsPred_train.R                                          |only
 CSTools-4.0.0/CSTools/R/CST_AdamontAnalog.R                                          |only
 CSTools-4.0.0/CSTools/R/CST_AdamontQQCorr.R                                          |only
 CSTools-4.0.0/CSTools/R/CST_Analogs.R                                                | 1107 ++++++----
 CSTools-4.0.0/CSTools/R/CST_AnalogsPredictors.R                                      |only
 CSTools-4.0.0/CSTools/R/CST_Anomaly.R                                                |    3 
 CSTools-4.0.0/CSTools/R/CST_BiasCorrection.R                                         |    1 
 CSTools-4.0.0/CSTools/R/CST_Calibration.R                                            |  298 +-
 CSTools-4.0.0/CSTools/R/CST_CategoricalEnsCombination.R                              |   54 
 CSTools-4.0.0/CSTools/R/CST_Load.R                                                   |    2 
 CSTools-4.0.0/CSTools/R/CST_MergeDims.R                                              |    4 
 CSTools-4.0.0/CSTools/R/CST_MultiMetric.R                                            |  214 +
 CSTools-4.0.0/CSTools/R/CST_MultivarRMSE.R                                           |   13 
 CSTools-4.0.0/CSTools/R/CST_QuantileMapping.R                                        |  120 +
 CSTools-4.0.0/CSTools/R/CST_RFSlope.R                                                |   28 
 CSTools-4.0.0/CSTools/R/CST_RFWeights.R                                              |  110 
 CSTools-4.0.0/CSTools/R/CST_RainFARM.R                                               |  138 -
 CSTools-4.0.0/CSTools/R/CST_RegimesAssign.R                                          |   14 
 CSTools-4.0.0/CSTools/R/CST_SaveExp.R                                                |   17 
 CSTools-4.0.0/CSTools/R/CST_SplitDim.R                                               |   79 
 CSTools-4.0.0/CSTools/R/CST_WeatherRegimes.R                                         |    4 
 CSTools-4.0.0/CSTools/R/PlotCombinedMap.R                                            |    2 
 CSTools-4.0.0/CSTools/R/PlotForecastPDF.R                                            |  194 +
 CSTools-4.0.0/CSTools/R/PlotMostLikelyQuantileMap.R                                  |    1 
 CSTools-4.0.0/CSTools/R/PlotPDFsOLE.R                                                |   41 
 CSTools-4.0.0/CSTools/R/PlotTriangles4Categories.R                                   |   14 
 CSTools-4.0.0/CSTools/R/sample_data.R                                                |   39 
 CSTools-4.0.0/CSTools/build/vignette.rds                                             |binary
 CSTools-4.0.0/CSTools/inst/doc/Analogs_vignette.R                                    |only
 CSTools-4.0.0/CSTools/inst/doc/Analogs_vignette.Rmd                                  |only
 CSTools-4.0.0/CSTools/inst/doc/Analogs_vignette.html                                 |only
 CSTools-4.0.0/CSTools/inst/doc/BestEstimateIndex_vignette.Rmd                        |    8 
 CSTools-4.0.0/CSTools/inst/doc/BestEstimateIndex_vignette.html                       |    8 
 CSTools-4.0.0/CSTools/inst/doc/Data_Considerations.Rmd                               |only
 CSTools-4.0.0/CSTools/inst/doc/Data_Considerations.html                              |only
 CSTools-4.0.0/CSTools/inst/doc/ENSclustering_vignette.Rmd                            |    4 
 CSTools-4.0.0/CSTools/inst/doc/ENSclustering_vignette.html                           |    4 
 CSTools-4.0.0/CSTools/inst/doc/MostLikelyTercile_vignette.Rmd                        |only
 CSTools-4.0.0/CSTools/inst/doc/MostLikelyTercile_vignette.html                       |only
 CSTools-4.0.0/CSTools/inst/doc/MultiModelSkill_vignette.Rmd                          |   56 
 CSTools-4.0.0/CSTools/inst/doc/MultiModelSkill_vignette.html                         |   59 
 CSTools-4.0.0/CSTools/inst/doc/MultivarRMSE_vignette.html                            |    2 
 CSTools-4.0.0/CSTools/inst/doc/PlotForecastPDF.R                                     |   23 
 CSTools-4.0.0/CSTools/inst/doc/PlotForecastPDF.Rmd                                   |   47 
 CSTools-4.0.0/CSTools/inst/doc/PlotForecastPDF.html                                  |   51 
 CSTools-4.0.0/CSTools/inst/doc/RainFARM_vignette.Rmd                                 |    6 
 CSTools-4.0.0/CSTools/inst/doc/RainFARM_vignette.html                                |    6 
 CSTools-4.0.0/CSTools/inst/doc/WeatherRegimes_vignette.Rmd                           |    2 
 CSTools-4.0.0/CSTools/inst/doc/WeatherRegimes_vignette.html                          |    8 
 CSTools-4.0.0/CSTools/man/AdamontQQCorr.Rd                                           |only
 CSTools-4.0.0/CSTools/man/Analogs.Rd                                                 |  392 +--
 CSTools-4.0.0/CSTools/man/CST_AdamontAnalog.Rd                                       |only
 CSTools-4.0.0/CSTools/man/CST_AdamontQQCorr.Rd                                       |only
 CSTools-4.0.0/CSTools/man/CST_Analogs.Rd                                             |  115 -
 CSTools-4.0.0/CSTools/man/CST_AnalogsPredictors.Rd                                   |only
 CSTools-4.0.0/CSTools/man/CST_Calibration.Rd                                         |   17 
 CSTools-4.0.0/CSTools/man/CST_MultiMetric.Rd                                         |   34 
 CSTools-4.0.0/CSTools/man/CST_MultivarRMSE.Rd                                        |    2 
 CSTools-4.0.0/CSTools/man/CST_QuantileMapping.Rd                                     |   30 
 CSTools-4.0.0/CSTools/man/CST_RFSlope.Rd                                             |    4 
 CSTools-4.0.0/CSTools/man/CST_RFWeights.Rd                                           |   23 
 CSTools-4.0.0/CSTools/man/CST_RainFARM.Rd                                            |   25 
 CSTools-4.0.0/CSTools/man/CST_SaveExp.Rd                                             |    2 
 CSTools-4.0.0/CSTools/man/CST_SplitDim.Rd                                            |   16 
 CSTools-4.0.0/CSTools/man/Calibration.Rd                                             |   24 
 CSTools-4.0.0/CSTools/man/CategoricalEnsCombination.Rd                               |only
 CSTools-4.0.0/CSTools/man/MultiMetric.Rd                                             |only
 CSTools-4.0.0/CSTools/man/PlotPDFsOLE.Rd                                             |   21 
 CSTools-4.0.0/CSTools/man/PlotTriangles4Categories.Rd                                |    6 
 CSTools-4.0.0/CSTools/man/QuantileMapping.Rd                                         |only
 CSTools-4.0.0/CSTools/man/RFSlope.Rd                                                 |   11 
 CSTools-4.0.0/CSTools/man/RF_Weights.Rd                                              |only
 CSTools-4.0.0/CSTools/man/RainFARM.Rd                                                |   18 
 CSTools-4.0.0/CSTools/man/SplitDim.Rd                                                |   12 
 CSTools-4.0.0/CSTools/man/training_analogs.Rd                                        |only
 CSTools-4.0.0/CSTools/src                                                            |only
 CSTools-4.0.0/CSTools/vignettes/Analogs_vignette.Rmd                                 |only
 CSTools-4.0.0/CSTools/vignettes/BestEstimateIndex_vignette.Rmd                       |    8 
 CSTools-4.0.0/CSTools/vignettes/Data_Considerations.Rmd                              |only
 CSTools-4.0.0/CSTools/vignettes/ENSclustering_vignette.Rmd                           |    4 
 CSTools-4.0.0/CSTools/vignettes/Figures/Analogs1.png                                 |only
 CSTools-4.0.0/CSTools/vignettes/Figures/Analogs2.png                                 |only
 CSTools-4.0.0/CSTools/vignettes/Figures/Analogs3.png                                 |only
 CSTools-4.0.0/CSTools/vignettes/Figures/Analogs4.png                                 |only
 CSTools-4.0.0/CSTools/vignettes/Figures/Analogs5.png                                 |only
 CSTools-4.0.0/CSTools/vignettes/Figures/Analogs6.png                                 |only
 CSTools-4.0.0/CSTools/vignettes/Figures/BestEstimateIndex_fig1.png                   |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/BestEstimateIndex_fig2.png                   |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/BestEstimateIndex_fig3.png                   |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/BestEstimateIndex_fig4.png                   |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/CSTvsNonCST.png                              |only
 CSTools-4.0.0/CSTools/vignettes/Figures/EnsClus_4clus_both_mem_std_Fig1.png          |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/EnsClus_4clus_both_mem_std_Fig2.png          |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/Meteofrance_r360x180.png                     |only
 CSTools-4.0.0/CSTools/vignettes/Figures/MostLikelyTercile_fig1.png                   |only
 CSTools-4.0.0/CSTools/vignettes/Figures/MostLikelyTercile_fig2.png                   |only
 CSTools-4.0.0/CSTools/vignettes/Figures/MostLikelyTercile_fig3.png                   |only
 CSTools-4.0.0/CSTools/vignettes/Figures/MultiModelSkill_cor_tas_1992-2012.png        |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/MultiModelSkill_rms_tas_1992-2012.png        |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/MultiModelSkill_rmsss_tas_1992-2012.png      |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/MultivarRMSE_gloseas5_tas_prlr_1992-2012.png |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/Obs_Persistence.png                          |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/PlotForecastPDF_ex1.png                      |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/PlotForecastPDF_ex2.png                      |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/PlotForecastPDF_ex3.png                      |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/PlotForecastPDF_ex4.png                      |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/RainFARM_fig1.png                            |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/RainFARM_fig2.png                            |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/observed_regimes.png                         |binary
 CSTools-4.0.0/CSTools/vignettes/Figures/predicted_regimes.png                        |binary
 CSTools-4.0.0/CSTools/vignettes/MostLikelyTercile_vignette.Rmd                       |only
 CSTools-4.0.0/CSTools/vignettes/MultiModelSkill_vignette.Rmd                         |   56 
 CSTools-4.0.0/CSTools/vignettes/PlotForecastPDF.Rmd                                  |   47 
 CSTools-4.0.0/CSTools/vignettes/RainFARM_vignette.Rmd                                |    6 
 CSTools-4.0.0/CSTools/vignettes/WeatherRegimes_vignette.Rmd                          |    2 
 121 files changed, 2504 insertions(+), 1460 deletions(-)

More information about CSTools at CRAN
Permanent link

Package prt updated to version 0.1.3 with previous version 0.1.2 dated 2020-09-29

Title: Tabular Data Backed by Partitioned 'fst' Files
Description: Intended for larger-than-memory tabular data, 'prt' objects provide an interface to read row and/or column subsets into memory as data.table objects. Data queries, constructed as 'R' expressions, are evaluated using the non-standard evaluation framework provided by 'rlang' and file-backing is powered by the fast and efficient 'fst' package.
Author: Nicolas Bennett [aut, cre], Drago Plecko [ctb]
Maintainer: Nicolas Bennett <nicolas.bennett@stat.math.ethz.ch>

Diff between prt versions 0.1.2 dated 2020-09-29 and 0.1.3 dated 2021-02-23

 DESCRIPTION                                   |    6 
 MD5                                           |   36 ++--
 NAMESPACE                                     |    3 
 NEWS.md                                       |    4 
 R/format.R                                    |   79 +++++-----
 R/utils.R                                     |   12 -
 README.md                                     |   14 -
 build/vignette.rds                            |binary
 inst/doc/prt.R                                |    5 
 inst/doc/prt.Rmd                              |    6 
 inst/doc/prt.html                             |  185 +++++++++++++-----------
 tests/testthat/output/format/POSIXct-8-60.txt |   18 +-
 tests/testthat/output/format/iris--70.txt     |   12 -
 tests/testthat/output/format/iris-5-30.txt    |   12 -
 tests/testthat/output/format/iris-inf-30.txt  |  198 +++++++++++++-------------
 tests/testthat/output/format/iris-neg-30.txt  |   12 -
 tests/testthat/output/format/long-5-30.txt    |   20 +-
 tests/testthat/output/format/mtcars-8-30.txt  |   18 +-
 vignettes/prt.Rmd                             |    6 
 19 files changed, 336 insertions(+), 310 deletions(-)

More information about prt at CRAN
Permanent link

Package mvabund updated to version 4.1.9 with previous version 4.1.6 dated 2020-12-18

Title: Statistical Methods for Analysing Multivariate Abundance Data
Description: A set of tools for displaying, modeling and analysing multivariate abundance data in community ecology. See 'mvabund-package.Rd' for details of overall package organization. The package is implemented with the Gnu Scientific Library (<http://www.gnu.org/software/gsl/>) and 'Rcpp' (<http://dirk.eddelbuettel.com/code/rcpp.html>) 'R' / 'C++' classes.
Author: Yi Wang [aut], Ulrike Naumann [aut], Dirk Eddelbuettel [aut], John Wilshire [aut], David Warton [aut, cre], Julian Byrnes [ctb], Ralph dos Santos Silva [ctb, cph], Jenni Niku [ctb], Ian Renner [ctb], Stephen Wright [ctb]
Maintainer: David Warton <David.Warton@unsw.edu.au>

Diff between mvabund versions 4.1.6 dated 2020-12-18 and 4.1.9 dated 2021-02-23

 DESCRIPTION              |    8 ++++----
 MD5                      |   14 +++++++-------
 R/best.r.sq.R            |    6 ++++--
 R/coefplot.manyglm.R     |    4 ++--
 R/default.plot.manyglm.R |   12 +++++++-----
 R/default.plot.manylm.R  |   29 +++++++++++++++++++----------
 R/residuals.manyglm.R    |    1 +
 README.md                |    4 ++--
 8 files changed, 46 insertions(+), 32 deletions(-)

More information about mvabund at CRAN
Permanent link

Package rplos updated to version 1.0.0 with previous version 0.9.0 dated 2020-04-08

Title: Interface to the Search API for 'PLoS' Journals
Description: A programmatic interface to the 'SOLR' based search API (<http://api.plos.org/>) provided by the Public Library of Science journals to search their articles. Functions are included for searching for articles, retrieving articles, making plots, doing 'faceted' searches, 'highlight' searches, and viewing results of 'highlighted' searches in a browser.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), Carl Boettiger [aut], Karthik Ram [aut], rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between rplos versions 0.9.0 dated 2020-04-08 and 1.0.0 dated 2021-02-23

 rplos-0.9.0/rplos/README.md                                      |only
 rplos-1.0.0/rplos/DESCRIPTION                                    |   19 
 rplos-1.0.0/rplos/LICENSE                                        |    2 
 rplos-1.0.0/rplos/MD5                                            |   82 
 rplos-1.0.0/rplos/NEWS.md                                        |    8 
 rplos-1.0.0/rplos/R/plossubject.R                                |    2 
 rplos-1.0.0/rplos/R/rplos-package.R                              |    2 
 rplos-1.0.0/rplos/build/vignette.rds                             |binary
 rplos-1.0.0/rplos/inst/doc/facethighlight.Rmd                    |   36 
 rplos-1.0.0/rplos/inst/doc/facethighlight.html                   |   73 
 rplos-1.0.0/rplos/inst/doc/fulltext.Rmd                          |   64 
 rplos-1.0.0/rplos/inst/doc/fulltext.html                         |  103 
 rplos-1.0.0/rplos/inst/doc/rplos.Rmd                             |   84 
 rplos-1.0.0/rplos/inst/doc/rplos.html                            |  125 
 rplos-1.0.0/rplos/man/figures/plosword1plot-1.png                |binary
 rplos-1.0.0/rplos/man/figures/throughtime1-1.png                 |binary
 rplos-1.0.0/rplos/man/figures/unnamed-chunk-21-1.png             |binary
 rplos-1.0.0/rplos/man/highplos.Rd                                |    2 
 rplos-1.0.0/rplos/man/plossubject.Rd                             |    2 
 rplos-1.0.0/rplos/man/rplos.Rd                                   |    2 
 rplos-1.0.0/rplos/tests/fixtures/full_text_urls_all_journals.yml |12439 ----------
 rplos-1.0.0/rplos/tests/fixtures/plosfigtabcaps_id.yml           |only
 rplos-1.0.0/rplos/tests/testthat/test-facetplos.R                |    4 
 rplos-1.0.0/rplos/tests/testthat/test-formatarticleurl.R         |    4 
 rplos-1.0.0/rplos/tests/testthat/test-fulltext.R                 |   12 
 rplos-1.0.0/rplos/tests/testthat/test-highbrow.R                 |    4 
 rplos-1.0.0/rplos/tests/testthat/test-highplos.R                 |    4 
 rplos-1.0.0/rplos/tests/testthat/test-journalnamekey.R           |    4 
 rplos-1.0.0/rplos/tests/testthat/test-plosabstract.R             |    3 
 rplos-1.0.0/rplos/tests/testthat/test-plosauthor.R               |    4 
 rplos-1.0.0/rplos/tests/testthat/test-plosfields.R               |    7 
 rplos-1.0.0/rplos/tests/testthat/test-plosfigtabcaps.R           |    8 
 rplos-1.0.0/rplos/tests/testthat/test-plossubject.R              |    4 
 rplos-1.0.0/rplos/tests/testthat/test-plostitle.R                |    4 
 rplos-1.0.0/rplos/tests/testthat/test-plosviews.R                |    4 
 rplos-1.0.0/rplos/tests/testthat/test-plosword.R                 |    4 
 rplos-1.0.0/rplos/tests/testthat/test-plot_throughtime.R         |    3 
 rplos-1.0.0/rplos/tests/testthat/test-searchplos.R               |    6 
 rplos-1.0.0/rplos/vignettes/facethighlight.Rmd                   |   36 
 rplos-1.0.0/rplos/vignettes/fulltext.Rmd                         |   64 
 rplos-1.0.0/rplos/vignettes/fulltext.Rmd.og                      |    6 
 rplos-1.0.0/rplos/vignettes/rplos.Rmd                            |   84 
 rplos-1.0.0/rplos/vignettes/rplos.Rmd.og                         |    2 
 43 files changed, 602 insertions(+), 12714 deletions(-)

More information about rplos at CRAN
Permanent link

Package ggmosaic updated to version 0.3.3 with previous version 0.2.0 dated 2018-09-12

Title: Mosaic Plots in the 'ggplot2' Framework
Description: Mosaic plots in the 'ggplot2' framework. Mosaic plot functionality is provided in a single 'ggplot2' layer by calling the geom 'mosaic'.
Author: Haley Jeppson [aut, cre], Heike Hofmann [aut], Di Cook [aut], Hadley Wickham [ctb]
Maintainer: Haley Jeppson <hjeppson@iastate.edu>

Diff between ggmosaic versions 0.2.0 dated 2018-09-12 and 0.3.3 dated 2021-02-23

 ggmosaic-0.2.0/ggmosaic/man/scale_type.product.Rd        |only
 ggmosaic-0.2.0/ggmosaic/man/scale_type.tbl_df.Rd         |only
 ggmosaic-0.3.3/ggmosaic/DESCRIPTION                      |   18 
 ggmosaic-0.3.3/ggmosaic/MD5                              |   65 -
 ggmosaic-0.3.3/ggmosaic/NAMESPACE                        |   21 
 ggmosaic-0.3.3/ggmosaic/NEWS.md                          |   16 
 ggmosaic-0.3.3/ggmosaic/R/calculate.R                    |   12 
 ggmosaic-0.3.3/ggmosaic/R/data.R                         |   88 +
 ggmosaic-0.3.3/ggmosaic/R/geom-mosaic-jitter.R           |only
 ggmosaic-0.3.3/ggmosaic/R/geom-mosaic-text.R             |only
 ggmosaic-0.3.3/ggmosaic/R/geom-mosaic.r                  |   91 +
 ggmosaic-0.3.3/ggmosaic/R/scale-product.R                |   73 -
 ggmosaic-0.3.3/ggmosaic/R/stat-mosaic-jitter.r           |only
 ggmosaic-0.3.3/ggmosaic/R/stat-mosaic-text.R             |only
 ggmosaic-0.3.3/ggmosaic/R/stat-mosaic.r                  |  135 +-
 ggmosaic-0.3.3/ggmosaic/R/theme-mosaic.R                 |only
 ggmosaic-0.3.3/ggmosaic/README.md                        |   61 -
 ggmosaic-0.3.3/ggmosaic/build/vignette.rds               |binary
 ggmosaic-0.3.3/ggmosaic/data/fly.rda                     |binary
 ggmosaic-0.3.3/ggmosaic/data/happy.rda                   |binary
 ggmosaic-0.3.3/ggmosaic/data/titanic.rda                 |only
 ggmosaic-0.3.3/ggmosaic/inst/doc/ggmosaic.R              |  354 +++----
 ggmosaic-0.3.3/ggmosaic/inst/doc/ggmosaic.Rmd            |  445 ++++----
 ggmosaic-0.3.3/ggmosaic/inst/doc/ggmosaic.html           |  750 +++++++--------
 ggmosaic-0.3.3/ggmosaic/inst/server.R                    |    2 
 ggmosaic-0.3.3/ggmosaic/man/GeomMosaic.Rd                |only
 ggmosaic-0.3.3/ggmosaic/man/GeomMosaicJitter.Rd          |only
 ggmosaic-0.3.3/ggmosaic/man/GeomMosaicText.Rd            |only
 ggmosaic-0.3.3/ggmosaic/man/StatMosaicJitter.Rd          |only
 ggmosaic-0.3.3/ggmosaic/man/StatMosaicText.Rd            |only
 ggmosaic-0.3.3/ggmosaic/man/figures/README-example-1.png |binary
 ggmosaic-0.3.3/ggmosaic/man/fly.Rd                       |   60 -
 ggmosaic-0.3.3/ggmosaic/man/geom_mosaic.Rd               |  108 +-
 ggmosaic-0.3.3/ggmosaic/man/geom_mosaic_jitter.Rd        |only
 ggmosaic-0.3.3/ggmosaic/man/geom_mosaic_text.Rd          |only
 ggmosaic-0.3.3/ggmosaic/man/happy.Rd                     |   30 
 ggmosaic-0.3.3/ggmosaic/man/prodcalc.Rd                  |   11 
 ggmosaic-0.3.3/ggmosaic/man/product.Rd                   |   17 
 ggmosaic-0.3.3/ggmosaic/man/scale_x_productlist.Rd       |   98 +
 ggmosaic-0.3.3/ggmosaic/man/theme_mosaic.Rd              |only
 ggmosaic-0.3.3/ggmosaic/man/titanic.Rd                   |only
 ggmosaic-0.3.3/ggmosaic/vignettes/ggmosaic.Rmd           |  445 ++++----
 42 files changed, 1527 insertions(+), 1373 deletions(-)

More information about ggmosaic at CRAN
Permanent link

Package eatGADS updated to version 0.16.0 with previous version 0.15.2 dated 2020-11-25

Title: Data Management of Large Hierarchical Data
Description: Import 'SPSS' data, handle and change 'SPSS' meta data, store and access large hierarchical data in 'SQLite' data bases.
Author: Benjamin Becker [aut, cre]
Maintainer: Benjamin Becker <b.becker@iqb.hu-berlin.de>

Diff between eatGADS versions 0.15.2 dated 2020-11-25 and 0.16.0 dated 2021-02-23

 eatGADS-0.15.2/eatGADS/tests/testthat/test_writeSPSS.R         |only
 eatGADS-0.16.0/eatGADS/DESCRIPTION                             |    9 
 eatGADS-0.16.0/eatGADS/MD5                                     |  117 -
 eatGADS-0.16.0/eatGADS/NAMESPACE                               |   13 
 eatGADS-0.16.0/eatGADS/NEWS.md                                 |   29 
 eatGADS-0.16.0/eatGADS/R/GADSdat_utilities.R                   |    9 
 eatGADS-0.16.0/eatGADS/R/applyChangeMeta.R                     |  157 +
 eatGADS-0.16.0/eatGADS/R/changeSPSSformat.R                    |   19 
 eatGADS-0.16.0/eatGADS/R/changeValLabels.R                     |    6 
 eatGADS-0.16.0/eatGADS/R/checkMissings.R                       |    2 
 eatGADS-0.16.0/eatGADS/R/checkValLabels.R                      |only
 eatGADS-0.16.0/eatGADS/R/checkValue.R                          |   38 
 eatGADS-0.16.0/eatGADS/R/collapseColumns.R                     |   12 
 eatGADS-0.16.0/eatGADS/R/compareGADS.R                         |only
 eatGADS-0.16.0/eatGADS/R/extract_labels.R                      |    3 
 eatGADS-0.16.0/eatGADS/R/getChangeMeta.R                       |    5 
 eatGADS-0.16.0/eatGADS/R/import_stata.R                        |only
 eatGADS-0.16.0/eatGADS/R/recode2NA.R                           |only
 eatGADS-0.16.0/eatGADS/R/recodeGADS.R                          |   67 
 eatGADS-0.16.0/eatGADS/R/recodeString2NA.R                     |   39 
 eatGADS-0.16.0/eatGADS/R/removeValLabels.R                     |   37 
 eatGADS-0.16.0/eatGADS/R/write_spss.R                          |   37 
 eatGADS-0.16.0/eatGADS/README.md                               |   16 
 eatGADS-0.16.0/eatGADS/build/partial.rdb                       |binary
 eatGADS-0.16.0/eatGADS/inst/doc/createGADS.html                |  474 +----
 eatGADS-0.16.0/eatGADS/inst/doc/getGADS.html                   |  498 +----
 eatGADS-0.16.0/eatGADS/inst/doc/import_raw.html                |  608 ++-----
 eatGADS-0.16.0/eatGADS/inst/doc/import_spss.html               |  414 +---
 eatGADS-0.16.0/eatGADS/inst/doc/recoding_forcedChoice.R        |    6 
 eatGADS-0.16.0/eatGADS/inst/doc/recoding_forcedChoice.html     |  592 ++----
 eatGADS-0.16.0/eatGADS/inst/doc/recoding_forcedChoice.rmd      |    8 
 eatGADS-0.16.0/eatGADS/inst/doc/recoding_multipleChoice.html   |  857 +++-------
 eatGADS-0.16.0/eatGADS/man/applyChangeMeta.Rd                  |   23 
 eatGADS-0.16.0/eatGADS/man/changeValLabels.Rd                  |    6 
 eatGADS-0.16.0/eatGADS/man/checkEmptyValLabels.Rd              |only
 eatGADS-0.16.0/eatGADS/man/checkMissings.Rd                    |    2 
 eatGADS-0.16.0/eatGADS/man/checkValue.Rd                       |   17 
 eatGADS-0.16.0/eatGADS/man/collapseColumns.Rd                  |    4 
 eatGADS-0.16.0/eatGADS/man/compareGADS.Rd                      |only
 eatGADS-0.16.0/eatGADS/man/import_stata.Rd                     |only
 eatGADS-0.16.0/eatGADS/man/recode2NA.Rd                        |only
 eatGADS-0.16.0/eatGADS/man/recodeGADS.Rd                       |   31 
 eatGADS-0.16.0/eatGADS/man/recodeString2NA.Rd                  |   21 
 eatGADS-0.16.0/eatGADS/man/removeValLabels.Rd                  |   25 
 eatGADS-0.16.0/eatGADS/man/write_spss.Rd                       |   25 
 eatGADS-0.16.0/eatGADS/tests/testthat/helper_spss_datetime.sav |only
 eatGADS-0.16.0/eatGADS/tests/testthat/test_GADSdat_utilities.R |   10 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_applyChangeMeta.R   |  106 +
 eatGADS-0.16.0/eatGADS/tests/testthat/test_changeMissings.R    |  109 -
 eatGADS-0.16.0/eatGADS/tests/testthat/test_changeSPSSformat.R  |   10 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_changeValLabels.R   |    5 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_checkValLabels.R    |only
 eatGADS-0.16.0/eatGADS/tests/testthat/test_checkValue.R        |   65 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_collapseColumns.R   |   10 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_collapseMC_Text.R   |    8 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_compareGADS.R       |only
 eatGADS-0.16.0/eatGADS/tests/testthat/test_getChangeMeta.R     |   12 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_import_raw.R        |    3 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_recode2NA.R         |only
 eatGADS-0.16.0/eatGADS/tests/testthat/test_recodeGADS.R        |   27 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_recodeString2NA.R   |   32 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_remove2NAchar.R     |    3 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_removeValLabels.R   |   26 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_times2character.R   |   15 
 eatGADS-0.16.0/eatGADS/tests/testthat/test_write_spss.R        |only
 eatGADS-0.16.0/eatGADS/tests/testthat/test_write_stata.R       |only
 eatGADS-0.16.0/eatGADS/vignettes/recoding_forcedChoice.rmd     |    8 
 67 files changed, 1943 insertions(+), 2732 deletions(-)

More information about eatGADS at CRAN
Permanent link

Package diffrprojectswidget (with last version 0.1.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-11-07 0.1.5

Permanent link
Package kmeRs (with last version 1.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-11-03 1.1.0

Permanent link
Package rhcoclust (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-12-08 1.0.0

Permanent link
Package tcR (with last version 2.3.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-06-09 2.3.2
2020-03-22 2.2.4.1
2019-03-25 2.2.4
2019-01-07 2.2.3
2018-08-01 2.2.2
2016-04-22 2.2.1.11
2015-12-22 2.2.1.7
2015-11-07 2.2.1

Permanent link
Package qualityTools (with last version 1.55) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-02-24 1.55

Permanent link
Package diffrprojects (with last version 0.1.14) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-11-06 0.1.14

Permanent link
Package qcr (with last version 1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-04-21 1.2
2016-07-19 1.0
2014-05-30 0.1-18

Permanent link
Package reproducer updated to version 0.4.2 with previous version 0.4.1 dated 2021-02-14

Title: Reproduce Statistical Analyses and Meta-Analyses
Description: Includes data analysis functions (e.g., to calculate effect sizes and 95% Confidence Intervals (CI) on Standardised Effect Sizes (d) for AB/BA cross-over repeated-measures experimental designs), data presentation functions (e.g., density curve overlaid on histogram), and the data sets analyzed in different research papers in software engineering (e.g., related to software defect prediction or multi-site experiment concerning the extent to which structured abstracts were clearer and more complete than conventional abstracts) to streamline reproducible research in software engineering.
Author: Lech Madeyski [cre, aut, ctb] (The main contributor and maintainer), Barbara Kitchenham [ctb] (Data and code contributor), Tomasz Lewowski [ctb] (Data and code contributor), Marian Jureczko [ctb] (Data contributor), David Budgen [ctb] (Data contributor), Pearl Brereton [ctb] (Data contributor), Jacky Keung [ctb] (Data contributor), Stuart Charters [ctb] (Data contributor), Shirley Gibbs [ctb] (Data contributor), Amnart Pohthong [ctb] (Data contributor), Giuseppe Scanniello [ctb] (Data contributor), Carmine Gravino [ctb] (Data contributor)
Maintainer: Lech Madeyski <lech.madeyski@gmail.com>

Diff between reproducer versions 0.4.1 dated 2021-02-14 and 0.4.2 dated 2021-02-23

 reproducer-0.4.1/reproducer/man/simulateRandomzedDesignEffectSizes.Rd    |only
 reproducer-0.4.2/reproducer/DESCRIPTION                                  |    8 ++---
 reproducer-0.4.2/reproducer/MD5                                          |   12 ++++----
 reproducer-0.4.2/reproducer/NAMESPACE                                    |    2 -
 reproducer-0.4.2/reproducer/NEWS.md                                      |    6 ++++
 reproducer-0.4.2/reproducer/R/NPSimulation.R                             |   14 +++++-----
 reproducer-0.4.2/reproducer/man/RandomizedBlocksExperimentSimulations.Rd |    6 +---
 reproducer-0.4.2/reproducer/man/simulateRandomizedDesignEffectSizes.Rd   |only
 8 files changed, 26 insertions(+), 22 deletions(-)

More information about reproducer at CRAN
Permanent link

Package DiceKriging updated to version 1.6.0 with previous version 1.5.8 dated 2020-11-05

Title: Kriging Methods for Computer Experiments
Description: Estimation, validation and prediction of kriging models. Important functions : km, print.km, plot.km, predict.km.
Author: Olivier Roustant, David Ginsbourger, Yves Deville. Contributors: Clement Chevalier, Yann Richet.
Maintainer: Olivier Roustant <roustant@insa-toulouse.fr>

Diff between DiceKriging versions 1.5.8 dated 2020-11-05 and 1.6.0 dated 2021-02-23

 CHANGELOG                  |   12 ++++++++++++
 DESCRIPTION                |    8 ++++----
 MD5                        |   13 ++++++++-----
 NAMESPACE                  |    1 +
 R/cv.R                     |only
 man/DiceKriging-package.Rd |    4 ++--
 man/cv.Rd                  |only
 man/leaveOneOut.km.Rd      |    7 +++++--
 tests/testthat/tests-cv.R  |only
 9 files changed, 32 insertions(+), 13 deletions(-)

More information about DiceKriging at CRAN
Permanent link

Package Boom updated to version 0.9.7 with previous version 0.9.6 dated 2020-04-30

Title: Bayesian Object Oriented Modeling
Description: A C++ library for Bayesian modeling, with an emphasis on Markov chain Monte Carlo. Although boom contains a few R utilities (mainly plotting functions), its primary purpose is to install the BOOM C++ library on your system so that other packages can link against it.
Author: Steven L. Scott is the sole author and creator of the BOOM project. Some code in the BOOM libraries has been modified from other open source projects. These include Cephes (obtained from Netlib, written by Stephen L. Moshier), NEWUOA (M.J.D Powell, obtained from Powell's web site), and a modified version of the R math libraries (R core development team). Original copyright notices have been maintained in all source files. In these cases, copyright claimed by Steven L. Scott is limited to modifications made to the original code. Google claims copyright for code written while Steven L. Scott was employed at Google from 2008 - 2018, but BOOM is not an officially supported Google project.
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>

Diff between Boom versions 0.9.6 dated 2020-04-30 and 0.9.7 dated 2021-02-23

 DESCRIPTION                                                                 |    8 
 MD5                                                                         |  462 +++---
 inst/include/Bmath/Bmath.hpp                                                |    1 
 inst/include/Bmath/bessel.hpp                                               |only
 inst/include/Eigen/CMakeLists.txt                                           |only
 inst/include/Eigen/Cholesky                                                 |    5 
 inst/include/Eigen/Core                                                     |   34 
 inst/include/Eigen/Eigenvalues                                              |    8 
 inst/include/Eigen/Geometry                                                 |    4 
 inst/include/Eigen/LU                                                       |    4 
 inst/include/Eigen/QR                                                       |    8 
 inst/include/Eigen/QtAlignedMalloc                                          |    2 
 inst/include/Eigen/SVD                                                      |    4 
 inst/include/Eigen/SparseQR                                                 |    1 
 inst/include/Eigen/src/Cholesky/LDLT.h                                      |   14 
 inst/include/Eigen/src/Cholesky/LLT.h                                       |   26 
 inst/include/Eigen/src/Core/Array.h                                         |    2 
 inst/include/Eigen/src/Core/ArrayBase.h                                     |    4 
 inst/include/Eigen/src/Core/AssignEvaluator.h                               |   66 
 inst/include/Eigen/src/Core/Assign_MKL.h                                    |    6 
 inst/include/Eigen/src/Core/ConditionEstimator.h                            |    2 
 inst/include/Eigen/src/Core/CoreEvaluators.h                                |   39 
 inst/include/Eigen/src/Core/CwiseUnaryView.h                                |    2 
 inst/include/Eigen/src/Core/DenseBase.h                                     |    7 
 inst/include/Eigen/src/Core/DenseStorage.h                                  |    6 
 inst/include/Eigen/src/Core/Diagonal.h                                      |    5 
 inst/include/Eigen/src/Core/Dot.h                                           |   17 
 inst/include/Eigen/src/Core/GeneralProduct.h                                |   21 
 inst/include/Eigen/src/Core/GenericPacketMath.h                             |    9 
 inst/include/Eigen/src/Core/Map.h                                           |   17 
 inst/include/Eigen/src/Core/MapBase.h                                       |   11 
 inst/include/Eigen/src/Core/MathFunctions.h                                 |   80 -
 inst/include/Eigen/src/Core/MathFunctionsImpl.h                             |   23 
 inst/include/Eigen/src/Core/Matrix.h                                        |    2 
 inst/include/Eigen/src/Core/MatrixBase.h                                    |   38 
 inst/include/Eigen/src/Core/PermutationMatrix.h                             |   28 
 inst/include/Eigen/src/Core/PlainObjectBase.h                               |   16 
 inst/include/Eigen/src/Core/Product.h                                       |   10 
 inst/include/Eigen/src/Core/ProductEvaluators.h                             |   59 
 inst/include/Eigen/src/Core/Redux.h                                         |    2 
 inst/include/Eigen/src/Core/Ref.h                                           |    7 
 inst/include/Eigen/src/Core/SelfAdjointView.h                               |    6 
 inst/include/Eigen/src/Core/SelfCwiseBinaryOp.h                             |    4 
 inst/include/Eigen/src/Core/SolveTriangular.h                               |    9 
 inst/include/Eigen/src/Core/StableNorm.h                                    |    2 
 inst/include/Eigen/src/Core/Transpose.h                                     |    2 
 inst/include/Eigen/src/Core/Transpositions.h                                |   41 
 inst/include/Eigen/src/Core/TriangularMatrix.h                              |    8 
 inst/include/Eigen/src/Core/arch/AVX/Complex.h                              |   36 
 inst/include/Eigen/src/Core/arch/AVX/PacketMath.h                           |   24 
 inst/include/Eigen/src/Core/arch/AVX512/MathFunctions.h                     |   95 -
 inst/include/Eigen/src/Core/arch/AVX512/PacketMath.h                        |  729 ++++------
 inst/include/Eigen/src/Core/arch/AltiVec/Complex.h                          |   35 
 inst/include/Eigen/src/Core/arch/AltiVec/PacketMath.h                       |   46 
 inst/include/Eigen/src/Core/arch/CUDA/Half.h                                |  254 ++-
 inst/include/Eigen/src/Core/arch/CUDA/PacketMathHalf.h                      |    9 
 inst/include/Eigen/src/Core/arch/Default/ConjHelper.h                       |only
 inst/include/Eigen/src/Core/arch/NEON/Complex.h                             |   12 
 inst/include/Eigen/src/Core/arch/NEON/PacketMath.h                          |   31 
 inst/include/Eigen/src/Core/arch/SSE/Complex.h                              |   40 
 inst/include/Eigen/src/Core/arch/SSE/PacketMath.h                           |   24 
 inst/include/Eigen/src/Core/arch/SSE/TypeCasting.h                          |   28 
 inst/include/Eigen/src/Core/arch/ZVector/Complex.h                          |    3 
 inst/include/Eigen/src/Core/functors/BinaryFunctors.h                       |   25 
 inst/include/Eigen/src/Core/functors/StlFunctors.h                          |    4 
 inst/include/Eigen/src/Core/functors/UnaryFunctors.h                        |    2 
 inst/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h              |   22 
 inst/include/Eigen/src/Core/products/GeneralMatrixMatrix.h                  |   37 
 inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h        |   68 
 inst/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h   |   20 
 inst/include/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h             |   25 
 inst/include/Eigen/src/Core/products/GeneralMatrixVector.h                  |    8 
 inst/include/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h             |   19 
 inst/include/Eigen/src/Core/products/Parallelizer.h                         |    9 
 inst/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h              |   54 
 inst/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h         |   72 
 inst/include/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h         |    9 
 inst/include/Eigen/src/Core/products/SelfadjointProduct.h                   |    4 
 inst/include/Eigen/src/Core/products/TriangularMatrixMatrix.h               |   89 -
 inst/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h          |   65 
 inst/include/Eigen/src/Core/products/TriangularMatrixVector.h               |   22 
 inst/include/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h          |   46 
 inst/include/Eigen/src/Core/products/TriangularSolverMatrix.h               |   62 
 inst/include/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h          |   52 
 inst/include/Eigen/src/Core/util/BlasUtil.h                                 |  115 +
 inst/include/Eigen/src/Core/util/DisableStupidWarnings.h                    |   27 
 inst/include/Eigen/src/Core/util/ForwardDeclarations.h                      |    6 
 inst/include/Eigen/src/Core/util/MKL_support.h                              |   10 
 inst/include/Eigen/src/Core/util/Macros.h                                   |   75 -
 inst/include/Eigen/src/Core/util/Memory.h                                   |   24 
 inst/include/Eigen/src/Core/util/Meta.h                                     |   76 +
 inst/include/Eigen/src/Core/util/ReenableStupidWarnings.h                   |    8 
 inst/include/Eigen/src/Core/util/StaticAssert.h                             |  120 -
 inst/include/Eigen/src/Core/util/XprHelper.h                                |   17 
 inst/include/Eigen/src/Eigenvalues/ComplexSchur.h                           |    9 
 inst/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h                 |    5 
 inst/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h                  |    2 
 inst/include/Eigen/src/Eigenvalues/RealSchur.h                              |   19 
 inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h                 |    7 
 inst/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h         |   25 
 inst/include/Eigen/src/Geometry/AngleAxis.h                                 |    2 
 inst/include/Eigen/src/Geometry/Quaternion.h                                |   51 
 inst/include/Eigen/src/Geometry/Scaling.h                                   |    2 
 inst/include/Eigen/src/Geometry/Transform.h                                 |    4 
 inst/include/Eigen/src/Geometry/Translation.h                               |    6 
 inst/include/Eigen/src/Geometry/Umeyama.h                                   |    2 
 inst/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h        |    2 
 inst/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h           |    5 
 inst/include/Eigen/src/Jacobi/Jacobi.h                                      |  253 +--
 inst/include/Eigen/src/LU/InverseImpl.h                                     |    2 
 inst/include/Eigen/src/LU/PartialPivLU.h                                    |    5 
 inst/include/Eigen/src/LU/arch/Inverse_SSE.h                                |    4 
 inst/include/Eigen/src/PaStiXSupport/PaStiXSupport.h                        |    8 
 inst/include/Eigen/src/PardisoSupport/PardisoSupport.h                      |    3 
 inst/include/Eigen/src/SVD/BDCSVD.h                                         |   94 -
 inst/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h                              |    5 
 inst/include/Eigen/src/SVD/SVDBase.h                                        |    4 
 inst/include/Eigen/src/SparseCholesky/SimplicialCholesky.h                  |    2 
 inst/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h             |    2 
 inst/include/Eigen/src/SparseCore/AmbiVector.h                              |    7 
 inst/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h         |   67 
 inst/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h                      |    2 
 inst/include/Eigen/src/SparseCore/SparseMatrix.h                            |    9 
 inst/include/Eigen/src/SparseCore/SparseSelfAdjointView.h                   |   12 
 inst/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h          |   22 
 inst/include/Eigen/src/SparseCore/SparseView.h                              |    1 
 inst/include/Eigen/src/SparseLU/SparseLU.h                                  |    6 
 inst/include/Eigen/src/SparseQR/SparseQR.h                                  |   26 
 inst/include/Eigen/src/StlSupport/StdDeque.h                                |    6 
 inst/include/Eigen/src/SuperLUSupport/SuperLUSupport.h                      |    4 
 inst/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h                        |    2 
 inst/include/LinAlg/Array.hpp                                               |   16 
 inst/include/LinAlg/Matrix.hpp                                              |   26 
 inst/include/LinAlg/SWEEP.hpp                                               |   15 
 inst/include/Models/CategoricalData.hpp                                     |   28 
 inst/include/Models/DataTypes.hpp                                           |   24 
 inst/include/Models/FiniteMixtureModel.hpp                                  |    5 
 inst/include/Models/Glm/GlmCoefs.hpp                                        |   12 
 inst/include/Models/Glm/LoglinearModel.hpp                                  |only
 inst/include/Models/Glm/MultivariateRegression.hpp                          |   14 
 inst/include/Models/Glm/MvtRegModel.hpp                                     |    4 
 inst/include/Models/Glm/PosteriorSamplers/LoglinearModelBipfSampler.hpp     |only
 inst/include/Models/Glm/PosteriorSamplers/MultivariateRegressionSampler.hpp |    5 
 inst/include/Models/Glm/RegressionModel.hpp                                 |    6 
 inst/include/Models/Glm/TRegression.hpp                                     |    6 
 inst/include/Models/Glm/VariableSelectionPrior.hpp                          |    4 
 inst/include/Models/IRT/Item.hpp                                            |    9 
 inst/include/Models/IRT/PartialCreditModel.hpp                              |    4 
 inst/include/Models/Impute                                                  |only
 inst/include/Models/ModelTypes.hpp                                          |   18 
 inst/include/Models/MultinomialModel.hpp                                    |   27 
 inst/include/Models/ParamTypes.hpp                                          |   20 
 inst/include/Models/PointProcess/PoissonProcess.hpp                         |   14 
 inst/include/Models/PoissonModel.hpp                                        |    2 
 inst/include/Models/Policies/CompositeParamPolicy.hpp                       |    8 
 inst/include/Models/Policies/IID_DataPolicy.hpp                             |   17 
 inst/include/Models/Policies/ManyParamPolicy.hpp                            |    8 
 inst/include/Models/Policies/NullParamPolicy.hpp                            |    4 
 inst/include/Models/Policies/NullPriorPolicy.hpp                            |    1 
 inst/include/Models/Policies/ParamPolicy_1.hpp                              |   30 
 inst/include/Models/Policies/ParamPolicy_2.hpp                              |   54 
 inst/include/Models/Policies/ParamPolicy_3.hpp                              |   13 
 inst/include/Models/Policies/ParamPolicy_4.hpp                              |    8 
 inst/include/Models/Policies/PriorPolicy.hpp                                |    2 
 inst/include/Models/PosteriorSamplers/MultinomialDirichletSampler.hpp       |   27 
 inst/include/Models/SpdParams.hpp                                           |    2 
 inst/include/Models/StateSpace/DynamicRegression.hpp                        |    8 
 inst/include/Models/StateSpace/StateModels/SemilocalLinearTrend.hpp         |    5 
 inst/include/Models/StateSpace/StateModels/StaticInterceptStateModel.hpp    |    9 
 inst/include/Models/StateSpace/StateSpaceModelBase.hpp                      |    6 
 inst/include/Models/WishartModel.hpp                                        |    2 
 inst/include/TargetFun/Loglike.hpp                                          |    2 
 inst/include/cpputil/ParamHolder.hpp                                        |    9 
 inst/include/cpputil/ToString.hpp                                           |   13 
 inst/include/distributions.hpp                                              |   23 
 inst/include/distributions/Rmath_dist.hpp                                   |    2 
 inst/include/distributions/rng.hpp                                          |   14 
 inst/include/numopt/Integral.hpp                                            |   16 
 inst/include/r_interface/boom_r_tools.hpp                                   |   20 
 inst/include/stats/DataTable.hpp                                            |  289 +++
 inst/include/stats/ECDF.hpp                                                 |   16 
 inst/include/stats/Encoders.hpp                                             |only
 inst/include/stats/FreqDist.hpp                                             |    7 
 inst/include/stats/IQagent.hpp                                              |   33 
 inst/include/stats/hexbin.hpp                                               |only
 inst/include/stats/summary.hpp                                              |  113 +
 src/Bmath/Bmath.hpp                                                         |    1 
 src/Bmath/bessel.hpp                                                        |only
 src/Bmath/bessel_k.cpp                                                      |only
 src/LinAlg/Array.cpp                                                        |   74 -
 src/LinAlg/CorrelationMatrix.cpp                                            |    8 
 src/LinAlg/Matrix.cpp                                                       |  132 +
 src/LinAlg/SWEEP.cpp                                                        |   69 
 src/LinAlg/Vector.cpp                                                       |   28 
 src/LinAlg/VectorView.cpp                                                   |   17 
 src/Models/CategoricalData.cpp                                              |   29 
 src/Models/DataTypes.cpp                                                    |   28 
 src/Models/FiniteMixtureModel.cpp                                           |   21 
 src/Models/Glm/GlmCoefs.cpp                                                 |    5 
 src/Models/Glm/LoglinearModel.cpp                                           |only
 src/Models/Glm/MultivariateRegression.cpp                                   |   18 
 src/Models/Glm/MvtRegModel.cpp                                              |    6 
 src/Models/Glm/PosteriorSamplers/LoglinearModelBipfSampler.cpp              |only
 src/Models/Glm/PosteriorSamplers/MultivariateRegressionSampler.cpp          |   11 
 src/Models/Glm/RegressionModel.cpp                                          |    4 
 src/Models/Glm/TRegression.cpp                                              |    7 
 src/Models/Glm/VariableSelectionPrior.cpp                                   |   16 
 src/Models/IRT/DafePcrItemSampler.cpp                                       |    2 
 src/Models/IRT/PartialCreditModel.cpp                                       |    4 
 src/Models/Impute                                                           |only
 src/Models/Mixtures/PosteriorSamplers/SplitMerge.cpp                        |   43 
 src/Models/ModelTypes.cpp                                                   |    6 
 src/Models/MultinomialModel.cpp                                             |   55 
 src/Models/ParamTypes.cpp                                                   |    9 
 src/Models/PoissonModel.cpp                                                 |    2 
 src/Models/Policies/CompositeParamPolicy.cpp                                |    8 
 src/Models/Policies/NullParamPolicy.cpp                                     |   10 
 src/Models/PosteriorSamplers/MultinomialDirichletSampler.cpp                |   62 
 src/Models/SpdParams.cpp                                                    |    4 
 src/Models/StateSpace/PosteriorSamplers/DynamicRegressionDirectGibbs.cpp    |    4 
 src/Models/StateSpace/StateSpaceModelBase.cpp                               |    4 
 src/Models/TimeSeries/ArModel.cpp                                           |    1 
 src/Models/TimeSeries/PosteriorSamplers/NonzeroMeanAr1Sampler.cpp           |    6 
 src/Models/WishartModel.cpp                                                 |    2 
 src/boom_r_tools.cpp                                                        |   31 
 src/cpputil/ParamHolder.cpp                                                 |    6 
 src/distributions/Rmath_dist.cpp                                            |    4 
 src/distributions/gig.cpp                                                   |only
 src/distributions/mvn.cpp                                                   |   18 
 src/distributions/rng.cpp                                                   |   12 
 src/distributions/trun_gamma.cpp                                            |    6 
 src/stats/DataTable.cpp                                                     |  654 ++++++--
 src/stats/ECDF.cpp                                                          |   28 
 src/stats/Encoders.cpp                                                      |only
 src/stats/FreqDist.cpp                                                      |    4 
 src/stats/IQagent.cpp                                                       |   48 
 src/stats/hexbin.cpp                                                        |only
 src/stats/summary.cpp                                                       |  133 +
 238 files changed, 4459 insertions(+), 2578 deletions(-)

More information about Boom at CRAN
Permanent link

Package mlt.docreg updated to version 1.0-10 with previous version 1.0-9 dated 2020-12-15

Title: Most Likely Transformations: Documentation and Regression Tests
Description: Additional documentation, a package vignette and regression tests for package mlt.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

Diff between mlt.docreg versions 1.0-9 dated 2020-12-15 and 1.0-10 dated 2021-02-23

 DESCRIPTION                   |    8 ++---
 MD5                           |   20 ++++++------
 build/vignette.rds            |binary
 inst/NEWS.Rd                  |    7 ++++
 inst/doc/mlt.R                |   62 ++++++++++++++++++++++++++++++++++++---
 inst/doc/mlt.Rnw              |   66 ++++++++++++++++++++++++++++++++++++++----
 inst/doc/mlt.pdf              |binary
 tests/AFT-Ex.Rout.save        |    8 ++---
 tests/timedep_covar.R         |    4 +-
 tests/timedep_covar.Rout.save |   11 +++----
 vignettes/mlt.Rnw             |   66 ++++++++++++++++++++++++++++++++++++++----
 11 files changed, 212 insertions(+), 40 deletions(-)

More information about mlt.docreg at CRAN
Permanent link

Package episensr updated to version 1.0.0 with previous version 0.9.6 dated 2020-03-06

Title: Basic Sensitivity Analysis of Epidemiological Results
Description: Basic sensitivity analysis of the observed relative risks adjusting for unmeasured confounding and misclassification of the exposure/outcome, or both. It follows the bias analysis methods and examples from the book by Lash T.L, Fox M.P, and Fink A.K. "Applying Quantitative Bias Analysis to Epidemiologic Data", ('Springer', 2009).
Author: Denis Haine [aut, cre] (<https://orcid.org/0000-0002-6691-7335>)
Maintainer: Denis Haine <denis.haine@gmail.com>

Diff between episensr versions 0.9.6 dated 2020-03-06 and 1.0.0 dated 2021-02-23

 episensr-0.9.6/episensr/R/misclassification_cov.R               |only
 episensr-1.0.0/episensr/DESCRIPTION                             |   18 
 episensr-1.0.0/episensr/MD5                                     |  129 -
 episensr-1.0.0/episensr/NAMESPACE                               |   21 
 episensr-1.0.0/episensr/NEWS.md                                 |    8 
 episensr-1.0.0/episensr/R/boot.bias.R                           |    6 
 episensr-1.0.0/episensr/R/confounders.R                         |   44 
 episensr-1.0.0/episensr/R/confounders.emm.R                     |    2 
 episensr-1.0.0/episensr/R/confounders.evalue.R                  |   16 
 episensr-1.0.0/episensr/R/confounders.ext.R                     |    2 
 episensr-1.0.0/episensr/R/confounders.limit.R                   |    6 
 episensr-1.0.0/episensr/R/confounders.poly.R                    |    2 
 episensr-1.0.0/episensr/R/mbias.R                               |   66 
 episensr-1.0.0/episensr/R/misclassification.R                   |    2 
 episensr-1.0.0/episensr/R/misclassification.cov.R               |only
 episensr-1.0.0/episensr/R/multidimBias.R                        |   49 
 episensr-1.0.0/episensr/R/multiple.bias.R                       |   29 
 episensr-1.0.0/episensr/R/plot.episensr.booted.R                |   23 
 episensr-1.0.0/episensr/R/plot.episensr.probsens.R              |only
 episensr-1.0.0/episensr/R/plot.mbias.R                          |  144 -
 episensr-1.0.0/episensr/R/print.mbias.R                         |    2 
 episensr-1.0.0/episensr/R/probsens.R                            |  257 +-
 episensr-1.0.0/episensr/R/probsens.conf.R                       |  214 +-
 episensr-1.0.0/episensr/R/probsens.irr.R                        |  130 +
 episensr-1.0.0/episensr/R/probsens.irr.conf.R                   |  127 -
 episensr-1.0.0/episensr/R/probsens.sel.R                        |   93 -
 episensr-1.0.0/episensr/R/selection.R                           |    3 
 episensr-1.0.0/episensr/R/utils.R                               |only
 episensr-1.0.0/episensr/README.md                               |   47 
 episensr-1.0.0/episensr/build/vignette.rds                      |binary
 episensr-1.0.0/episensr/inst/CITATION                           |only
 episensr-1.0.0/episensr/inst/WORDLIST                           |only
 episensr-1.0.0/episensr/inst/doc/b_probabilistic.R              |only
 episensr-1.0.0/episensr/inst/doc/b_probabilistic.Rmd            |only
 episensr-1.0.0/episensr/inst/doc/b_probabilistic.html           |only
 episensr-1.0.0/episensr/inst/doc/c_multiple_bias.R              |only
 episensr-1.0.0/episensr/inst/doc/c_multiple_bias.Rmd            |only
 episensr-1.0.0/episensr/inst/doc/c_multiple_bias.html           |only
 episensr-1.0.0/episensr/inst/doc/d_other_sens.R                 |only
 episensr-1.0.0/episensr/inst/doc/d_other_sens.Rmd               |only
 episensr-1.0.0/episensr/inst/doc/d_other_sens.html              |only
 episensr-1.0.0/episensr/inst/doc/episensr.R                     |  322 +--
 episensr-1.0.0/episensr/inst/doc/episensr.Rmd                   |  606 ++----
 episensr-1.0.0/episensr/inst/doc/episensr.html                  |  915 +++++-----
 episensr-1.0.0/episensr/man/confounders.Rd                      |   12 
 episensr-1.0.0/episensr/man/confounders.emm.Rd                  |    2 
 episensr-1.0.0/episensr/man/confounders.evalue.Rd               |    6 
 episensr-1.0.0/episensr/man/confounders.ext.Rd                  |    2 
 episensr-1.0.0/episensr/man/confounders.limit.Rd                |    4 
 episensr-1.0.0/episensr/man/confounders.poly.Rd                 |    2 
 episensr-1.0.0/episensr/man/figures                             |only
 episensr-1.0.0/episensr/man/mbias.Rd                            |   15 
 episensr-1.0.0/episensr/man/misclassification.Rd                |    2 
 episensr-1.0.0/episensr/man/misclassification_cov.Rd            |   13 
 episensr-1.0.0/episensr/man/multidimBias.Rd                     |   21 
 episensr-1.0.0/episensr/man/multiple.bias.Rd                    |   14 
 episensr-1.0.0/episensr/man/plot.episensr.booted.Rd             |    4 
 episensr-1.0.0/episensr/man/plot.episensr.probsens.Rd           |only
 episensr-1.0.0/episensr/man/plot.mbias.Rd                       |   27 
 episensr-1.0.0/episensr/man/probsens.Rd                         |   61 
 episensr-1.0.0/episensr/man/probsens.conf.Rd                    |   40 
 episensr-1.0.0/episensr/man/probsens.irr.Rd                     |   19 
 episensr-1.0.0/episensr/man/probsens.irr.conf.Rd                |   34 
 episensr-1.0.0/episensr/man/probsens.sel.Rd                     |   33 
 episensr-1.0.0/episensr/man/selection.Rd                        |    3 
 episensr-1.0.0/episensr/tests/testthat/test-boot.R              |only
 episensr-1.0.0/episensr/tests/testthat/test-confounders.array.R |   18 
 episensr-1.0.0/episensr/tests/testthat/test-confounders.ext.R   |only
 episensr-1.0.0/episensr/tests/testthat/test-confounders.limit.R |   32 
 episensr-1.0.0/episensr/tests/testthat/test-misclass.R          |  107 +
 episensr-1.0.0/episensr/tests/testthat/test-multiple.R          |only
 episensr-1.0.0/episensr/tests/testthat/test-probsens.R          |  401 +++-
 episensr-1.0.0/episensr/tests/testthat/test-selection.R         |   18 
 episensr-1.0.0/episensr/vignettes/b_probabilistic.Rmd           |only
 episensr-1.0.0/episensr/vignettes/c_multiple_bias.Rmd           |only
 episensr-1.0.0/episensr/vignettes/d_other_sens.Rmd              |only
 episensr-1.0.0/episensr/vignettes/episensr.Rmd                  |  606 ++----
 77 files changed, 2775 insertions(+), 2004 deletions(-)

More information about episensr at CRAN
Permanent link

Package eirm updated to version 0.3 with previous version 0.2.0 dated 2020-10-27

Title: Explanatory Item Response Modeling for Dichotomous and Polytomous Items
Description: Analysis of dichotomous and polytomous response data using the explanatory item response modeling framework, as described in Stanke & Bulut (2019) <doi:10.21449/ijate.515085> and De Boeck & Wilson (2004) <doi:10.1007/978-1-4757-3990-9>. Generalized linear mixed modeling is used for estimating the effects of item-related and person-related variables on dichotomous and polytomous item responses.
Author: Okan Bulut [aut, cre] (<https://orcid.org/0000-0001-5853-1267>)
Maintainer: Okan Bulut <bulut@ualberta.ca>

Diff between eirm versions 0.2.0 dated 2020-10-27 and 0.3 dated 2021-02-23

 eirm-0.2.0/eirm/man/figures               |only
 eirm-0.3/eirm/DESCRIPTION                 |    7 
 eirm-0.3/eirm/MD5                         |   20 +-
 eirm-0.3/eirm/NAMESPACE                   |   52 +++--
 eirm-0.3/eirm/NEWS.md                     |only
 eirm-0.3/eirm/R/eirmShiny.R               |only
 eirm-0.3/eirm/R/plot.eirm.R               |   40 ++--
 eirm-0.3/eirm/R/utils-pipe.R              |only
 eirm-0.3/eirm/build/vignette.rds          |binary
 eirm-0.3/eirm/inst/CITATION               |only
 eirm-0.3/eirm/inst/doc/eirm_vignette.html |  261 +++++-------------------------
 eirm-0.3/eirm/inst/shiny                  |only
 eirm-0.3/eirm/man/eirmShiny.Rd            |only
 eirm-0.3/eirm/man/pipe.Rd                 |only
 14 files changed, 118 insertions(+), 262 deletions(-)

More information about eirm at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.