Title: Forensic Glass Transfer Probabilities
Description: Statistical interpretation of forensic glass transfer (Simulation of the probability distribution of recovered glass fragments).
Author: James Curran and TingYu Huang
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between tfer versions 1.1 dated 2010-11-08 and 1.2 dated 2020-07-09
tfer-1.1/tfer/R/tfer-class.R |only tfer-1.1/tfer/R/tfer-methods.R |only tfer-1.1/tfer/R/tfer-parameters-method.R |only tfer-1.1/tfer/R/tfer-plot-method.R |only tfer-1.1/tfer/R/tfer-tprob-methods.R |only tfer-1.1/tfer/man/Compare-methods.Rd |only tfer-1.1/tfer/man/para.Rd |only tfer-1.1/tfer/man/parameters-methods.Rd |only tfer-1.1/tfer/man/parameters.Rd |only tfer-1.1/tfer/man/plot-methods.Rd |only tfer-1.1/tfer/man/show-methods.Rd |only tfer-1.1/tfer/man/summary-methods.Rd |only tfer-1.1/tfer/man/tfer-package.Rd |only tfer-1.1/tfer/man/tprob-methods.Rd |only tfer-1.1/tfer/man/transfer-class.Rd |only tfer-1.1/tfer/man/values.Rd |only tfer-1.1/tfer/man/z[-methods.Rd |only tfer-1.2/tfer/DESCRIPTION | 18 +- tfer-1.2/tfer/MD5 |only tfer-1.2/tfer/NAMESPACE |only tfer-1.2/tfer/R/getParams.R |only tfer-1.2/tfer/R/getValues.R |only tfer-1.2/tfer/R/plot.transfer.R |only tfer-1.2/tfer/R/print.transfer.R |only tfer-1.2/tfer/R/subset.transfer.R |only tfer-1.2/tfer/R/summary.transfer.R |only tfer-1.2/tfer/R/tferR-package.R |only tfer-1.2/tfer/R/tprob.R |only tfer-1.2/tfer/R/transfer.R |only tfer-1.2/tfer/man/getParams.Rd |only tfer-1.2/tfer/man/getValues.Rd |only tfer-1.2/tfer/man/plot.tfer.Rd |only tfer-1.2/tfer/man/print.transfer.Rd |only tfer-1.2/tfer/man/summary.transfer.Rd |only tfer-1.2/tfer/man/tprob.Rd | 71 ++++---- tfer-1.2/tfer/man/transfer.Rd | 246 ++++++++++++++++--------------- 36 files changed, 173 insertions(+), 162 deletions(-)
Title: Spatio-Temporal Under-Five Mortality Methods for Estimation
Description: Provides methods for spatial and spatio-temporal smoothing of demographic and health indicators using survey data, with particular focus on estimating and projecting under-five mortality rates, described in Mercer et al. (2015) <doi:10.1214/15-AOAS872>
and Li et al. (2019) <doi:10.1371/journal.pone.0210645>.
Author: Zehang R Li [cre, aut],
Bryan D Martin [aut],
Yuan Hsiao [aut],
Jessica Godwin [aut],
Jon Wakefield [aut],
Samuel J Clark [aut],
Geir-Arne Fuglstad [aut],
Andrea Riebler [aut]
Maintainer: Zehang R Li <lizehang@gmail.com>
Diff between SUMMER versions 0.3.0 dated 2019-10-23 and 1.0.0 dated 2020-07-09
SUMMER-0.3.0/SUMMER/R/read_shape.R |only SUMMER-0.3.0/SUMMER/man/fitGeneric.Rd |only SUMMER-0.3.0/SUMMER/man/fitINLA.Rd |only SUMMER-0.3.0/SUMMER/man/fitINLA2.Rd |only SUMMER-0.3.0/SUMMER/man/read_shape.Rd |only SUMMER-1.0.0/SUMMER/DESCRIPTION | 28 SUMMER-1.0.0/SUMMER/MD5 | 137 +- SUMMER-1.0.0/SUMMER/NAMESPACE | 16 SUMMER-1.0.0/SUMMER/NEWS.md | 22 SUMMER-1.0.0/SUMMER/R/ChangeRegion.R | 3 SUMMER-1.0.0/SUMMER/R/DemoData.R | 4 SUMMER-1.0.0/SUMMER/R/DemoData2.R | 2 SUMMER-1.0.0/SUMMER/R/DemoMap.R | 2 SUMMER-1.0.0/SUMMER/R/DemoMap2.R | 8 SUMMER-1.0.0/SUMMER/R/Kendata.R | 4 SUMMER-1.0.0/SUMMER/R/MalawiData.R |only SUMMER-1.0.0/SUMMER/R/MalawiMap.R |only SUMMER-1.0.0/SUMMER/R/SUMMER.R | 6 SUMMER-1.0.0/SUMMER/R/aggregateSurvey.R | 5 SUMMER-1.0.0/SUMMER/R/countrySummary.R | 13 SUMMER-1.0.0/SUMMER/R/countrySummary_mult.R | 3 SUMMER-1.0.0/SUMMER/R/fitINLA.R | 669 +++++++++---- SUMMER-1.0.0/SUMMER/R/fitINLA2.R | 857 +++++++++++++---- SUMMER-1.0.0/SUMMER/R/fitspace.R | 265 +++-- SUMMER-1.0.0/SUMMER/R/getAdjusted.R | 1 SUMMER-1.0.0/SUMMER/R/getAmat.R | 1 SUMMER-1.0.0/SUMMER/R/getBirths.R | 25 SUMMER-1.0.0/SUMMER/R/getCounts.R | 6 SUMMER-1.0.0/SUMMER/R/getDiag.R | 173 ++- SUMMER-1.0.0/SUMMER/R/getSmoothedDensity.R |only SUMMER-1.0.0/SUMMER/R/hatchPlot.R | 44 SUMMER-1.0.0/SUMMER/R/mapPlot.R | 89 + SUMMER-1.0.0/SUMMER/R/mapPoints.R | 1 SUMMER-1.0.0/SUMMER/R/plot_projINLA.R | 72 - SUMMER-1.0.0/SUMMER/R/projINLA.R | 581 ++++++++--- SUMMER-1.0.0/SUMMER/R/simRandom.R | 7 SUMMER-1.0.0/SUMMER/R/simhyper.R | 3 SUMMER-1.0.0/SUMMER/R/tcpPlot.R |only SUMMER-1.0.0/SUMMER/R/zzz.R |only SUMMER-1.0.0/SUMMER/README.md | 100 + SUMMER-1.0.0/SUMMER/build/vignette.rds |binary SUMMER-1.0.0/SUMMER/data/KingCounty.rda |binary SUMMER-1.0.0/SUMMER/data/MalawiData.rda |only SUMMER-1.0.0/SUMMER/data/MalawiMap.rda |only SUMMER-1.0.0/SUMMER/data/datalist | 2 SUMMER-1.0.0/SUMMER/inst/doc/summer-vignette.html | 310 +++--- SUMMER-1.0.0/SUMMER/inst/doc/u5mr-vignette.html | 432 +++----- SUMMER-1.0.0/SUMMER/inst/doc/u5mr-vignette2.html | 248 ++-- SUMMER-1.0.0/SUMMER/inst/doc/u5mr-vignette2.html.asis | 2 SUMMER-1.0.0/SUMMER/man/ChangeRegion.Rd | 7 SUMMER-1.0.0/SUMMER/man/DemoData.Rd | 4 SUMMER-1.0.0/SUMMER/man/DemoData2.Rd | 2 SUMMER-1.0.0/SUMMER/man/DemoMap.Rd | 2 SUMMER-1.0.0/SUMMER/man/DemoMap2.Rd | 8 SUMMER-1.0.0/SUMMER/man/KenData.Rd | 4 SUMMER-1.0.0/SUMMER/man/MalawiData.Rd |only SUMMER-1.0.0/SUMMER/man/MalawiMap.Rd |only SUMMER-1.0.0/SUMMER/man/SUMMER-package.Rd | 6 SUMMER-1.0.0/SUMMER/man/aggregateSurvey.Rd | 3 SUMMER-1.0.0/SUMMER/man/getAdjusted.Rd | 3 SUMMER-1.0.0/SUMMER/man/getAmat.Rd | 3 SUMMER-1.0.0/SUMMER/man/getBirths.Rd | 20 SUMMER-1.0.0/SUMMER/man/getCounts.Rd | 8 SUMMER-1.0.0/SUMMER/man/getDiag.Rd | 30 SUMMER-1.0.0/SUMMER/man/getDirect.Rd | 8 SUMMER-1.0.0/SUMMER/man/getDirectList.Rd | 8 SUMMER-1.0.0/SUMMER/man/getSmoothed.Rd | 47 SUMMER-1.0.0/SUMMER/man/hatchPlot.Rd | 16 SUMMER-1.0.0/SUMMER/man/mapPlot.Rd | 29 SUMMER-1.0.0/SUMMER/man/mapPoints.Rd | 3 SUMMER-1.0.0/SUMMER/man/plot.SUMMERproj.Rd | 23 SUMMER-1.0.0/SUMMER/man/ridgePlot.Rd |only SUMMER-1.0.0/SUMMER/man/rst.Rd | 7 SUMMER-1.0.0/SUMMER/man/simhyper.Rd | 7 SUMMER-1.0.0/SUMMER/man/smoothCluster.Rd |only SUMMER-1.0.0/SUMMER/man/smoothDirect.Rd |only SUMMER-1.0.0/SUMMER/man/smoothSurvey.Rd |only SUMMER-1.0.0/SUMMER/man/tcpPlot.Rd |only SUMMER-1.0.0/SUMMER/vignettes/u5mr-vignette2.html.asis | 2 79 files changed, 2908 insertions(+), 1483 deletions(-)
Title: Species Sensitivity Distributions
Description: Species sensitivity distributions are
cumulative probability distributions which are fitted to
toxicity concentrations for different species as described by
Posthuma et al.(2001) <isbn:9781566705783>.
The ssdtools package uses Maximum Likelihood to fit distributions
such as the log-normal, gamma, log-logistic,
log-Gumbel, Gompertz and Weibull.
The user can provide custom distributions.
Multiple distributions can be averaged using Information Criteria.
Confidence intervals on hazard concentrations and proportions are produced by
parametric bootstrapping.
Author: Joe Thorley [aut, cre, ctr] (<https://orcid.org/0000-0002-7683-4592>),
Carl Schwarz [aut, ctr],
Angeline Tillmanns [ctb],
Ali Azizishirazi [ctb],
Rebecca Fisher [ctb],
David Fox [ctb],
Kathleen McTavish [ctb],
Heather Thompson [ctb],
Andy Teucher [ctb],
Emilie Doussantousse [ctb],
Stephanie Hazlitt [ctb],
Nan-Hung Hsieh [ctb],
Sergio Ibarra Espinosa [ctb],
Province of British Columbia [cph]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between ssdtools versions 0.2.0 dated 2020-04-15 and 0.3.0 dated 2020-07-09
ssdtools-0.2.0/ssdtools/R/burrIII3.R |only ssdtools-0.2.0/ssdtools/R/deprecated.R |only ssdtools-0.2.0/ssdtools/tests/testthat/test-aaa-deprecated.R |only ssdtools-0.2.0/ssdtools/tests/testthat/test-burrrIII3.R |only ssdtools-0.3.0/ssdtools/DESCRIPTION | 19 ssdtools-0.3.0/ssdtools/MD5 | 200 +++++----- ssdtools-0.3.0/ssdtools/NAMESPACE | 7 ssdtools-0.3.0/ssdtools/NEWS.md | 25 + ssdtools-0.3.0/ssdtools/R/RcppExports.R |only ssdtools-0.3.0/ssdtools/R/burrIII2.R | 90 +--- ssdtools-0.3.0/ssdtools/R/burrrIII3.R |only ssdtools-0.3.0/ssdtools/R/data.R | 96 ++-- ssdtools-0.3.0/ssdtools/R/dpqr.R |only ssdtools-0.3.0/ssdtools/R/fit.R | 18 ssdtools-0.3.0/ssdtools/R/gamma.R | 24 - ssdtools-0.3.0/ssdtools/R/ggplot.R | 2 ssdtools-0.3.0/ssdtools/R/ggproto.R | 2 ssdtools-0.3.0/ssdtools/R/gof.R | 4 ssdtools-0.3.0/ssdtools/R/gompertz.R | 40 -- ssdtools-0.3.0/ssdtools/R/hc.R | 10 ssdtools-0.3.0/ssdtools/R/lgumbel.R | 42 -- ssdtools-0.3.0/ssdtools/R/llog.R |only ssdtools-0.3.0/ssdtools/R/llogis.R | 42 -- ssdtools-0.3.0/ssdtools/R/lnorm.R |only ssdtools-0.3.0/ssdtools/R/match-moments.R | 2 ssdtools-0.3.0/ssdtools/R/namespace.R | 2 ssdtools-0.3.0/ssdtools/R/params.R | 6 ssdtools-0.3.0/ssdtools/R/pareto.R | 21 - ssdtools-0.3.0/ssdtools/R/plot-cf.R | 10 ssdtools-0.3.0/ssdtools/R/utils.R | 3 ssdtools-0.3.0/ssdtools/R/weibull.R | 17 ssdtools-0.3.0/ssdtools/R/zzz.R | 5 ssdtools-0.3.0/ssdtools/README.md | 21 - ssdtools-0.3.0/ssdtools/build/vignette.rds |binary ssdtools-0.3.0/ssdtools/data/boron_data.rda |binary ssdtools-0.3.0/ssdtools/data/boron_dists.rda |binary ssdtools-0.3.0/ssdtools/data/boron_hc5.rda |binary ssdtools-0.3.0/ssdtools/data/boron_lnorm.rda |binary ssdtools-0.3.0/ssdtools/data/boron_pred.rda |binary ssdtools-0.3.0/ssdtools/data/ccme_data.rda |binary ssdtools-0.3.0/ssdtools/data/fluazinam_dists.rda |binary ssdtools-0.3.0/ssdtools/data/fluazinam_lnorm.rda |binary ssdtools-0.3.0/ssdtools/data/fluazinam_pred.rda |binary ssdtools-0.3.0/ssdtools/inst/WORDLIST |only ssdtools-0.3.0/ssdtools/inst/doc/distributions.R | 2 ssdtools-0.3.0/ssdtools/inst/doc/distributions.Rmd | 2 ssdtools-0.3.0/ssdtools/inst/doc/distributions.html | 48 +- ssdtools-0.3.0/ssdtools/inst/doc/exposure-plots.html | 52 +- ssdtools-0.3.0/ssdtools/inst/doc/faqs.Rmd | 9 ssdtools-0.3.0/ssdtools/inst/doc/faqs.html | 55 +- ssdtools-0.3.0/ssdtools/inst/doc/small-sample-bias-ref.html | 29 - ssdtools-0.3.0/ssdtools/inst/doc/ssdtools.Rmd | 10 ssdtools-0.3.0/ssdtools/inst/doc/ssdtools.html | 78 ++- ssdtools-0.3.0/ssdtools/man/boron_data.Rd | 19 ssdtools-0.3.0/ssdtools/man/boron_hc5.Rd | 22 - ssdtools-0.3.0/ssdtools/man/boron_pred.Rd | 20 - ssdtools-0.3.0/ssdtools/man/burrIII2.Rd | 38 - ssdtools-0.3.0/ssdtools/man/burrIII3.Rd | 33 - ssdtools-0.3.0/ssdtools/man/ccme_data.Rd | 31 - ssdtools-0.3.0/ssdtools/man/comma_signif.Rd | 2 ssdtools-0.3.0/ssdtools/man/figures/README-unnamed-chunk-10-1.png |binary ssdtools-0.3.0/ssdtools/man/figures/README-unnamed-chunk-5-1.png |binary ssdtools-0.3.0/ssdtools/man/fluazinam_dists.Rd | 2 ssdtools-0.3.0/ssdtools/man/fluazinam_lnorm.Rd | 2 ssdtools-0.3.0/ssdtools/man/fluazinam_pred.Rd | 20 - ssdtools-0.3.0/ssdtools/man/gamma.Rd | 7 ssdtools-0.3.0/ssdtools/man/geom_hcintersect.Rd | 2 ssdtools-0.3.0/ssdtools/man/geom_xribbon.Rd | 4 ssdtools-0.3.0/ssdtools/man/gompertz.Rd | 29 - ssdtools-0.3.0/ssdtools/man/lgumbel.Rd | 30 - ssdtools-0.3.0/ssdtools/man/llogis.Rd | 42 +- ssdtools-0.3.0/ssdtools/man/lnorm.Rd |only ssdtools-0.3.0/ssdtools/man/params.Rd | 10 ssdtools-0.3.0/ssdtools/man/pareto.Rd | 11 ssdtools-0.3.0/ssdtools/man/ssd_fit_dists.Rd | 14 ssdtools-0.3.0/ssdtools/man/ssd_gof.Rd | 20 - ssdtools-0.3.0/ssdtools/man/ssd_match_moments.Rd | 2 ssdtools-0.3.0/ssdtools/man/ssd_plot_cf.Rd | 12 ssdtools-0.3.0/ssdtools/man/ssdtools-ggproto.Rd | 2 ssdtools-0.3.0/ssdtools/man/ssdtools-package.Rd | 2 ssdtools-0.3.0/ssdtools/man/stat_ssd.Rd | 2 ssdtools-0.3.0/ssdtools/man/test_data.Rd | 12 ssdtools-0.3.0/ssdtools/man/weibull.Rd | 8 ssdtools-0.3.0/ssdtools/src |only ssdtools-0.3.0/ssdtools/tests/testthat/test-burrIII2.R | 180 ++++++--- ssdtools-0.3.0/ssdtools/tests/testthat/test-burrIII3.R |only ssdtools-0.3.0/ssdtools/tests/testthat/test-exposure.R | 12 ssdtools-0.3.0/ssdtools/tests/testthat/test-fit.R | 80 ++-- ssdtools-0.3.0/ssdtools/tests/testthat/test-gamma.R | 140 ++++--- ssdtools-0.3.0/ssdtools/tests/testthat/test-gof.R | 12 ssdtools-0.3.0/ssdtools/tests/testthat/test-gompertz.R | 164 +++++--- ssdtools-0.3.0/ssdtools/tests/testthat/test-hc.R | 104 ++--- ssdtools-0.3.0/ssdtools/tests/testthat/test-hp.R | 130 ++---- ssdtools-0.3.0/ssdtools/tests/testthat/test-lgumbel.R | 160 ++++++-- ssdtools-0.3.0/ssdtools/tests/testthat/test-llog.R |only ssdtools-0.3.0/ssdtools/tests/testthat/test-llogis.R | 16 ssdtools-0.3.0/ssdtools/tests/testthat/test-lnorm.R |only ssdtools-0.3.0/ssdtools/tests/testthat/test-match-moments.R | 49 -- ssdtools-0.3.0/ssdtools/tests/testthat/test-pareto.R | 24 - ssdtools-0.3.0/ssdtools/tests/testthat/test-predict.R | 43 -- ssdtools-0.3.0/ssdtools/tests/testthat/test-schwarz-tillmans.R | 34 - ssdtools-0.3.0/ssdtools/tests/testthat/test-test-data.R | 26 - ssdtools-0.3.0/ssdtools/tests/testthat/test-weibull.R |only ssdtools-0.3.0/ssdtools/vignettes/distributions.Rmd | 2 ssdtools-0.3.0/ssdtools/vignettes/faqs.Rmd | 9 ssdtools-0.3.0/ssdtools/vignettes/ssdtools.Rmd | 10 106 files changed, 1409 insertions(+), 1177 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. <https://martin3141.github.io/spant/>.
Author: Martin Wilson [cre, aut],
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 1.6.0 dated 2020-06-05 and 1.7.0 dated 2020-07-09
spant-1.6.0/spant/man/write_mrs_dpt_v2.Rd |only spant-1.6.0/spant/man/write_mrs_lcm_raw.Rd |only spant-1.6.0/spant/man/write_mrs_rds.Rd |only spant-1.7.0/spant/DESCRIPTION | 12 - spant-1.7.0/spant/MD5 | 44 ++-- spant-1.7.0/spant/NAMESPACE | 7 spant-1.7.0/spant/NEWS.md | 10 + spant-1.7.0/spant/R/mrs_data_io.R | 132 +++++++------ spant-1.7.0/spant/R/mrs_data_proc.R | 22 +- spant-1.7.0/spant/R/mrs_read_nifti.R |only spant-1.7.0/spant/R/mrs_write_nifti.R |only spant-1.7.0/spant/R/spant.R | 8 spant-1.7.0/spant/R/utils.R | 12 - spant-1.7.0/spant/build/vignette.rds |binary spant-1.7.0/spant/inst/doc/abfit-baseline-opts.html | 90 +++++---- spant-1.7.0/spant/inst/doc/spant-intro.html | 194 ++++++++++---------- spant-1.7.0/spant/inst/doc/spant-preprocessing.html | 80 +++++--- spant-1.7.0/spant/man/array2mrs_data.Rd |only spant-1.7.0/spant/man/crop_spec.Rd | 4 spant-1.7.0/spant/man/crossprod_3d.Rd |only spant-1.7.0/spant/man/def_nuc.Rd |only spant-1.7.0/spant/man/read_mrs.Rd | 9 spant-1.7.0/spant/man/reexports.Rd | 2 spant-1.7.0/spant/man/sd.Rd | 27 -- spant-1.7.0/spant/man/spant_mpress_drift.Rd | 2 spant-1.7.0/spant/man/write_mrs.Rd |only spant-1.7.0/spant/man/write_mrs_nifti.Rd | 2 spant-1.7.0/spant/tests/testthat/test_nifti.R |only 28 files changed, 374 insertions(+), 283 deletions(-)
Title: Pacific Decadal Oscillation Index Data
Description: Monthly Pacific Decadal Oscillation (PDO) index
values from January 1900 to September 2018.
Superseded by 'rsoi' package which includes the historical and
most recent monthly PDO index values together with related climate indices.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Nathan Mantua [aut, dtc],
Steven R. Hare [aut, dtc]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between rpdo versions 0.3.0 dated 2020-03-04 and 0.3.1 dated 2020-07-09
DESCRIPTION | 19 +++++++----- MD5 | 28 +++++++++++++------ NEWS.md | 5 +++ R/pdo-download.R | 14 +++++++-- R/zzz.R |only README.md | 44 +++++++++++------------------- build |only inst |only man/figures/README-unnamed-chunk-2-1.png |binary man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-soft-deprecated.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/pdo.Rd | 6 ++-- man/pdo_download.Rd | 8 +++-- tests/testthat/test-pdo-download.R | 5 +++ 21 files changed, 78 insertions(+), 51 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between rlang versions 0.4.6 dated 2020-05-02 and 0.4.7 dated 2020-07-09
rlang-0.4.6/rlang/R/events.R |only rlang-0.4.6/rlang/tests/testthat/test-events.R |only rlang-0.4.7/rlang/DESCRIPTION | 10 rlang-0.4.7/rlang/MD5 | 282 ++++----- rlang-0.4.7/rlang/NAMESPACE | 10 rlang-0.4.7/rlang/NEWS.md | 65 ++ rlang-0.4.7/rlang/R/arg.R | 76 +- rlang-0.4.7/rlang/R/call.R | 46 + rlang-0.4.7/rlang/R/cnd-abort.R | 87 +- rlang-0.4.7/rlang/R/cnd-error.R | 103 +++ rlang-0.4.7/rlang/R/cnd-handlers.R | 4 rlang-0.4.7/rlang/R/cnd-signal.R | 108 ++- rlang-0.4.7/rlang/R/compat-defer.R |only rlang-0.4.7/rlang/R/compat-lifecycle.R | 11 rlang-0.4.7/rlang/R/deparse.R | 6 rlang-0.4.7/rlang/R/dots.R | 25 rlang-0.4.7/rlang/R/env-binding.R | 285 ++------- rlang-0.4.7/rlang/R/env-special.R | 19 rlang-0.4.7/rlang/R/env.R | 29 rlang-0.4.7/rlang/R/eval-tidy.R | 69 -- rlang-0.4.7/rlang/R/eval.R | 2 rlang-0.4.7/rlang/R/fn.R | 14 rlang-0.4.7/rlang/R/lifecycle-retired.R | 47 + rlang-0.4.7/rlang/R/lifecycle.R | 47 - rlang-0.4.7/rlang/R/nse-defuse.R | 5 rlang-0.4.7/rlang/R/parse.R | 59 + rlang-0.4.7/rlang/R/raw.R |only rlang-0.4.7/rlang/R/s3.R | 2 rlang-0.4.7/rlang/R/sexp.R | 4 rlang-0.4.7/rlang/R/state.R | 3 rlang-0.4.7/rlang/R/trace.R | 115 +++ rlang-0.4.7/rlang/R/types.R | 60 -- rlang-0.4.7/rlang/R/utils.R | 34 + rlang-0.4.7/rlang/README.md | 4 rlang-0.4.7/rlang/build/rlang.pdf |binary rlang-0.4.7/rlang/man/abort.Rd | 70 +- rlang-0.4.7/rlang/man/are_na.Rd | 2 rlang-0.4.7/rlang/man/arg_match.Rd | 34 - rlang-0.4.7/rlang/man/as_data_mask.Rd | 38 - rlang-0.4.7/rlang/man/as_name.Rd | 4 rlang-0.4.7/rlang/man/as_string.Rd | 2 rlang-0.4.7/rlang/man/bare-type-predicates.Rd | 4 rlang-0.4.7/rlang/man/box.Rd | 2 rlang-0.4.7/rlang/man/call2.Rd | 21 rlang-0.4.7/rlang/man/call_name.Rd | 4 rlang-0.4.7/rlang/man/call_parse_type.Rd |only rlang-0.4.7/rlang/man/caller_env.Rd | 4 rlang-0.4.7/rlang/man/cnd_muffle.Rd | 12 rlang-0.4.7/rlang/man/done.Rd | 2 rlang-0.4.7/rlang/man/dots_definitions.Rd | 4 rlang-0.4.7/rlang/man/dyn-dots.Rd | 19 rlang-0.4.7/rlang/man/env_bind.Rd | 5 rlang-0.4.7/rlang/man/env_bury.Rd | 8 rlang-0.4.7/rlang/man/env_parent.Rd | 11 rlang-0.4.7/rlang/man/env_poke.Rd | 13 rlang-0.4.7/rlang/man/env_unbind.Rd | 19 rlang-0.4.7/rlang/man/eval_tidy.Rd | 16 rlang-0.4.7/rlang/man/figures/lifecycle-superseded.svg |only rlang-0.4.7/rlang/man/inherits_any.Rd | 2 rlang-0.4.7/rlang/man/is_function.Rd | 2 rlang-0.4.7/rlang/man/is_installed.Rd | 13 rlang-0.4.7/rlang/man/is_integerish.Rd | 2 rlang-0.4.7/rlang/man/lifecycle.Rd | 44 - rlang-0.4.7/rlang/man/list2.Rd | 5 rlang-0.4.7/rlang/man/missing.Rd | 12 rlang-0.4.7/rlang/man/new_function.Rd | 2 rlang-0.4.7/rlang/man/new_node.Rd | 2 rlang-0.4.7/rlang/man/ns_env.Rd | 2 rlang-0.4.7/rlang/man/nse-defuse.Rd | 4 rlang-0.4.7/rlang/man/parse_expr.Rd | 30 - rlang-0.4.7/rlang/man/parse_quo.Rd |only rlang-0.4.7/rlang/man/parse_quosure.Rd | 5 rlang-0.4.7/rlang/man/raw_deparse_str.Rd |only rlang-0.4.7/rlang/man/return_from.Rd | 2 rlang-0.4.7/rlang/man/rlang_backtrace_on_error.Rd | 2 rlang-0.4.7/rlang/man/scalar-type-predicates.Rd | 4 rlang-0.4.7/rlang/man/stack.Rd | 2 rlang-0.4.7/rlang/man/switch_type.Rd | 2 rlang-0.4.7/rlang/man/tidyeval-data.Rd | 4 rlang-0.4.7/rlang/man/type-predicates.Rd | 4 rlang-0.4.7/rlang/man/vector-coercion.Rd | 2 rlang-0.4.7/rlang/man/with_env.Rd | 2 rlang-0.4.7/rlang/src/Makevars | 6 rlang-0.4.7/rlang/src/export/exported.c | 27 rlang-0.4.7/rlang/src/export/init.c | 34 - rlang-0.4.7/rlang/src/internal.c | 2 rlang-0.4.7/rlang/src/internal/arg.c | 116 +++ rlang-0.4.7/rlang/src/internal/attr.c | 6 rlang-0.4.7/rlang/src/internal/call.c | 2 rlang-0.4.7/rlang/src/internal/dots.c | 63 +- rlang-0.4.7/rlang/src/internal/env-binding.c | 298 +++++++++- rlang-0.4.7/rlang/src/internal/eval-tidy.c | 13 rlang-0.4.7/rlang/src/internal/eval.c | 2 rlang-0.4.7/rlang/src/internal/expr-interp.c | 7 rlang-0.4.7/rlang/src/internal/quo.c | 2 rlang-0.4.7/rlang/src/internal/utils.c | 6 rlang-0.4.7/rlang/src/internal/utils.h | 5 rlang-0.4.7/rlang/src/internal/vec-raw.c |only rlang-0.4.7/rlang/src/lib/attrs.c | 2 rlang-0.4.7/rlang/src/lib/attrs.h | 2 rlang-0.4.7/rlang/src/lib/cnd.c | 2 rlang-0.4.7/rlang/src/lib/cnd.h | 6 rlang-0.4.7/rlang/src/lib/debug.c | 7 rlang-0.4.7/rlang/src/lib/debug.h | 2 rlang-0.4.7/rlang/src/lib/env.c | 106 ++- rlang-0.4.7/rlang/src/lib/env.h | 42 + rlang-0.4.7/rlang/src/lib/node.c | 2 rlang-0.4.7/rlang/src/lib/rlang.c | 4 rlang-0.4.7/rlang/src/lib/rlang.h | 5 rlang-0.4.7/rlang/src/lib/stack.c | 14 rlang-0.4.7/rlang/src/lib/sym-unescape.c | 4 rlang-0.4.7/rlang/src/lib/sym.h | 1 rlang-0.4.7/rlang/src/lib/vec-chr.c | 11 rlang-0.4.7/rlang/src/lib/vec-chr.h | 35 + rlang-0.4.7/rlang/src/lib/vec-lgl.c | 28 rlang-0.4.7/rlang/src/lib/vec-lgl.h | 8 rlang-0.4.7/rlang/src/lib/vec.c | 32 - rlang-0.4.7/rlang/src/lib/vec.h | 35 - rlang-0.4.7/rlang/src/version.c | 2 rlang-0.4.7/rlang/tests/sink.R | 2 rlang-0.4.7/rlang/tests/testthat/helper-c-api.R | 4 rlang-0.4.7/rlang/tests/testthat/output-cnd-abort-parent-trace.txt | 9 rlang-0.4.7/rlang/tests/testthat/output-cnd-abort-trace-reminder.txt | 1 rlang-0.4.7/rlang/tests/testthat/test-arg.R | 62 +- rlang-0.4.7/rlang/tests/testthat/test-c-api.R | 195 +++--- rlang-0.4.7/rlang/tests/testthat/test-cnd-abort.R | 5 rlang-0.4.7/rlang/tests/testthat/test-cnd-error-parent-default.txt | 19 rlang-0.4.7/rlang/tests/testthat/test-cnd-error-parent-full.txt | 20 rlang-0.4.7/rlang/tests/testthat/test-cnd-error-parent-trace.txt | 46 - rlang-0.4.7/rlang/tests/testthat/test-cnd-error-str.txt | 25 rlang-0.4.7/rlang/tests/testthat/test-cnd-handlers.R | 9 rlang-0.4.7/rlang/tests/testthat/test-cnd-signal.R | 97 ++- rlang-0.4.7/rlang/tests/testthat/test-deparse.R | 25 rlang-0.4.7/rlang/tests/testthat/test-dots.R | 39 + rlang-0.4.7/rlang/tests/testthat/test-env-binding.R | 91 ++- rlang-0.4.7/rlang/tests/testthat/test-env-special.R | 4 rlang-0.4.7/rlang/tests/testthat/test-env.R | 25 rlang-0.4.7/rlang/tests/testthat/test-eval-tidy.R | 14 rlang-0.4.7/rlang/tests/testthat/test-fn.R | 4 rlang-0.4.7/rlang/tests/testthat/test-nse-force.R | 5 rlang-0.4.7/rlang/tests/testthat/test-parse.R | 14 rlang-0.4.7/rlang/tests/testthat/test-raw.R |only rlang-0.4.7/rlang/tests/testthat/test-retired.R | 4 rlang-0.4.7/rlang/tests/testthat/test-state.R | 21 rlang-0.4.7/rlang/tests/testthat/test-typo-suggest.txt | 28 rlang-0.4.7/rlang/tests/testthat/test-vec-new.R | 2 rlang-0.4.7/rlang/tests/testthat/test-with-abort.txt | 35 - 147 files changed, 2505 insertions(+), 1313 deletions(-)
Title: The Pareto, Piecewise Pareto and Generalized Pareto Distribution
Description: Utilities for the Pareto, piecewise Pareto and generalized Pareto distribution
that are useful for reinsurance pricing. In particular, the package provides
a non-trivial algorithm that can be used to match the expected losses of a
tower of reinsurance layers with a layer-independent collective risk model.
The theoretical background of the matching algorithm and most other methods
are described in Ulrich Riegel (2018) <doi:10.1007/s13385-018-0177-3>.
Author: Ulrich Riegel [aut, cre]
Maintainer: Ulrich Riegel <ulrich.riegel@gmx.de>
Diff between Pareto versions 2.0.0 dated 2020-05-02 and 2.1.0 dated 2020-07-09
DESCRIPTION | 12 MD5 | 72 +- NAMESPACE | 29 + NEWS.md | 15 R/CollectiveModelMethods.R |only R/Functions.R | 783 +++++++++++++++++++++++++++++- R/PGPModel.R |only R/PPPModel.R | 112 +--- R/ValidationFunctions.R | 26 README.md | 8 build/vignette.rds |binary inst/doc/Pareto.R | 103 ++- inst/doc/Pareto.Rmd | 97 +++ inst/doc/Pareto.html | 175 +++++- man/Example1_AP.Rd | 28 - man/Example1_EL.Rd | 28 - man/Excess_Frequency.PGP_Model.Rd |only man/Excess_Frequency.PPP_Model.Rd |only man/Excess_Frequency.Rd |only man/GenPareto_Layer_Mean.Rd |only man/GenPareto_Layer_SM.Rd |only man/GenPareto_Layer_Var.Rd |only man/GenPareto_ML_Estimator_Alpha.Rd |only man/Layer_Mean.PGP_Model.Rd |only man/Layer_Mean.PPP_Model.Rd |only man/Layer_Mean.Rd |only man/Layer_Sd.PGP_Model.Rd |only man/Layer_Sd.PPP_Model.Rd |only man/Layer_Sd.Rd |only man/Layer_Var.PGP_Model.Rd |only man/Layer_Var.PPP_Model.Rd |only man/Layer_Var.Rd |only man/PGP_Model.Rd |only man/PPP_Model_Excess_Frequency.Rd | 2 man/PPP_Model_Exp_Layer_Loss.Rd | 4 man/PPP_Model_Layer_Sd.Rd | 2 man/PPP_Model_Layer_Var.Rd | 4 man/PPP_Model_Simulate.Rd | 3 man/Simulate_Losses.PGP_Model.Rd |only man/Simulate_Losses.PPP_Model.Rd |only man/Simulate_Losses.Rd |only man/dGenPareto.Rd |only man/is.PGP_Model.Rd |only man/is.valid.PGP_Model.Rd |only man/is.valid.PPP_Model.Rd | 2 man/pGenPareto.Rd |only man/print.PGP_Model.Rd |only man/qGenPareto.Rd |only man/rGenPareto.Rd |only tests/testthat/test_functions_GenPareto.R |only tests/testthat/test_functions_PPP_Model.R | 58 +- vignettes/Pareto.Rmd | 97 +++ 52 files changed, 1402 insertions(+), 258 deletions(-)
Title: Inspect, Read, Edit and Run 'APSIM' "Next Generation" and
'APSIM' Classic
Description: The functions in this package inspect, read, edit and run files for 'APSIM' "Next Generation" ('JSON')
and 'APSIM' "Classic" ('XML'). The files with an 'apsim' extension correspond to
'APSIM' Classic (7.x) - Windows only - and the ones with an 'apsimx' extension correspond to 'APSIM' "Next Generation".
For more information about 'APSIM' see (<https://www.apsim.info/>) and for 'APSIM'
next generation (<https://apsimnextgeneration.netlify.com/>).
Author: Fernando Miguez [aut, cre] (<https://orcid.org/0000-0002-4627-8329>)
Maintainer: Fernando Miguez <femiguez@iastate.edu>
Diff between apsimx versions 1.941 dated 2020-07-01 and 1.946 dated 2020-07-09
DESCRIPTION | 10 +- MD5 | 79 +++++++++-------- NAMESPACE | 3 R/apsim_classic.R | 69 +++++++-------- R/apsim_met.R | 5 - R/apsim_version.R | 10 +- R/apsimx.R | 67 +++++++------- R/apsimx_filetype.R | 6 - R/apsimx_soil_profile.R | 95 +++++++++++++++++++- R/edit_apsim.R | 90 +++++++++---------- R/edit_apsim_replace_soil_profile.R | 5 - R/edit_apsimx_batch.R | 69 +++++++-------- R/edit_apsimx_json.R | 36 +++---- R/edit_apsimx_replace_soil_profile.R | 26 ++--- R/get_iemre_apsim_met.R | 15 +-- R/get_power_apsim_met.R | 30 +++--- R/inspect_apsim_xml.R | 118 +++++++++++++------------ R/inspect_apsimx_json.R | 33 +++---- R/inspect_apsimx_replacement.R | 55 ++++++------ R/ssurgo2sp.R | 30 +++--- R/view_apsimx.R |only R/zzz.R | 19 +++- README.md | 8 + inst/doc/apsimx-scripts.html | 6 - inst/doc/apsimx.R | 61 ++++++------- inst/doc/apsimx.Rmd | 61 ++++++------- inst/doc/apsimx.html | 151 +++++++++++++++++---------------- inst/extdata/Maize.csv |only inst/extdata/Wheat.csv |only man/apsim.Rd | 2 man/apsimx_soil_profile.Rd | 8 + man/edit_apsim_replace_soil_profile.Rd | 17 +++ man/edit_apsimx.Rd | 8 - man/edit_apsimx_batch.Rd | 2 man/get_iem_apsim_met.Rd | 5 - man/view_apsim.Rd |only man/view_apsimx.Rd |only man/write_apsim_met.Rd | 4 tests/test_classic_examples.r | 66 +++++++------- tests/test_edit_batch.R | 2 tests/test_examples.R | 1 tests/test_ssurgo2sp.R | 2 vignettes/apsimx.Rmd | 61 ++++++------- 43 files changed, 750 insertions(+), 585 deletions(-)
Title: Coloured Formatting for Columns
Description: Provides 'pillar' and 'colonnade' generics designed
for formatting columns of data using the full range of colours
provided by modern terminals.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between pillar versions 1.4.4 dated 2020-05-05 and 1.4.5 dated 2020-07-09
pillar-1.4.4/pillar/R/compat-lifecycle.R |only pillar-1.4.4/pillar/R/lengths.R |only pillar-1.4.4/pillar/R/shaft.R |only pillar-1.4.4/pillar/R/strrep.R |only pillar-1.4.4/pillar/build |only pillar-1.4.4/pillar/man/figures/lifecycle-retired.svg |only pillar-1.4.4/pillar/tests/testthat/out-native/deal1.txt |only pillar-1.4.4/pillar/tests/testthat/out-native/deal2.txt |only pillar-1.4.4/pillar/tests/testthat/out-native/deal3.txt |only pillar-1.4.4/pillar/tests/testthat/out-native/utf8.txt |only pillar-1.4.4/pillar/tests/testthat/out/list-one.txt |only pillar-1.4.4/pillar/tests/testthat/out/tibble-all-digits-secs.txt |only pillar-1.4.5/pillar/DESCRIPTION | 22 - pillar-1.4.5/pillar/MD5 | 111 +++++----- pillar-1.4.5/pillar/NAMESPACE | 3 pillar-1.4.5/pillar/NEWS.md | 23 ++ pillar-1.4.5/pillar/R/capital.R | 6 pillar-1.4.5/pillar/R/deprecated.R | 2 pillar-1.4.5/pillar/R/extent.R | 14 + pillar-1.4.5/pillar/R/multi.R | 12 - pillar-1.4.5/pillar/R/pillar-package.R | 6 pillar-1.4.5/pillar/R/pillar.R | 10 pillar-1.4.5/pillar/R/shaft-.R |only pillar-1.4.5/pillar/R/shaft-simple.R | 1 pillar-1.4.5/pillar/R/sigfig.R | 10 pillar-1.4.5/pillar/R/testthat.R | 2 pillar-1.4.5/pillar/R/title.R | 6 pillar-1.4.5/pillar/R/type-sum.R | 14 - pillar-1.4.5/pillar/R/type.R | 16 + pillar-1.4.5/pillar/R/zzz.R | 22 - pillar-1.4.5/pillar/README.md | 25 -- pillar-1.4.5/pillar/man/align.Rd |only pillar-1.4.5/pillar/man/colonnade.Rd | 2 pillar-1.4.5/pillar/man/deprecated.Rd | 2 pillar-1.4.5/pillar/man/extra_cols.Rd | 2 pillar-1.4.5/pillar/man/figures/lifecycle-superseded.svg |only pillar-1.4.5/pillar/man/format_type_sum.Rd | 2 pillar-1.4.5/pillar/man/new_pillar_shaft.Rd | 6 pillar-1.4.5/pillar/man/new_pillar_title.Rd | 2 pillar-1.4.5/pillar/man/new_pillar_type.Rd | 2 pillar-1.4.5/pillar/man/pillar-package.Rd | 6 pillar-1.4.5/pillar/man/pillar.Rd | 8 pillar-1.4.5/pillar/man/pillar_shaft.Rd | 17 - pillar-1.4.5/pillar/man/type_sum.Rd | 6 pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-06.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-07.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-08.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-09.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-10.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-11.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-12.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-13.txt |only pillar-1.4.5/pillar/tests/testthat/bw-out/integer64-14.txt |only pillar-1.4.5/pillar/tests/testthat/helper-output.R | 10 pillar-1.4.5/pillar/tests/testthat/out-native/integer64-06.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-07.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-08.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-09.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-10.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-11.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-12.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-13.txt |only pillar-1.4.5/pillar/tests/testthat/out-native/integer64-14.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-06.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-07.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-08.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-09.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-10.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-11.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-12.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-13.txt |only pillar-1.4.5/pillar/tests/testthat/out/integer64-14.txt |only pillar-1.4.5/pillar/tests/testthat/test-format_decimal.R | 1 pillar-1.4.5/pillar/tests/testthat/test-format_integer.R | 2 pillar-1.4.5/pillar/tests/testthat/test-format_integer64.R |only pillar-1.4.5/pillar/tests/testthat/test-format_rowid.R | 2 pillar-1.4.5/pillar/tests/testthat/test-format_scientific.R | 4 pillar-1.4.5/pillar/tests/testthat/test-format_time.R | 1 78 files changed, 220 insertions(+), 160 deletions(-)
Title: Regularization Paths for SCAD and MCP Penalized Regression
Models
Description: Fits regularization paths for linear regression, GLM, and Cox
regression models using lasso or nonconvex penalties, in particular the
minimax concave penalty (MCP) and smoothly clipped absolute deviation (SCAD)
penalty, with options for additional L2 penalties (the "elastic net" idea).
Utilities for carrying out cross-validation as well as post-fitting
visualization, summarization, inference, and prediction are also provided.
Author: Patrick Breheny [aut, cre] (<https://orcid.org/0000-0002-0650-1119>)
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between ncvreg versions 3.11.2 dated 2020-02-13 and 3.12.0 dated 2020-07-09
ncvreg-3.11.2/ncvreg/R/ncvreg_fit.R |only ncvreg-3.11.2/ncvreg/inst/testing-functions.R |only ncvreg-3.11.2/ncvreg/inst/tests |only ncvreg-3.11.2/ncvreg/tests/run |only ncvreg-3.12.0/ncvreg/DESCRIPTION | 12 - ncvreg-3.12.0/ncvreg/MD5 | 80 +++++------- ncvreg-3.12.0/ncvreg/NAMESPACE | 1 ncvreg-3.12.0/ncvreg/NEWS.md | 7 + ncvreg-3.12.0/ncvreg/R/ncvfit.R |only ncvreg-3.12.0/ncvreg/R/ncvreg.R | 23 ++- ncvreg-3.12.0/ncvreg/R/ncvsurv.R | 1 ncvreg-3.12.0/ncvreg/R/permres-ncvreg.R | 1 ncvreg-3.12.0/ncvreg/README.md | 8 - ncvreg-3.12.0/ncvreg/build/vignette.rds |binary ncvreg-3.12.0/ncvreg/inst/doc/getting-started.html | 140 ++++++++++++--------- ncvreg-3.12.0/ncvreg/inst/tinytest |only ncvreg-3.12.0/ncvreg/man/auc.Rd | 2 ncvreg-3.12.0/ncvreg/man/ncvfit.Rd |only ncvreg-3.12.0/ncvreg/man/ncvreg-package.Rd | 2 ncvreg-3.12.0/ncvreg/src/cox-dh.c | 6 ncvreg-3.12.0/ncvreg/src/ncvreg_init.c | 2 ncvreg-3.12.0/ncvreg/src/rawfit_gaussian.c |only ncvreg-3.12.0/ncvreg/tests/test.R |only 23 files changed, 165 insertions(+), 120 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
Hossein Falaki [aut],
Lu Wang [aut],
Andy Zhang [aut],
Yitao Li [aut, cre],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Yitao Li <yitao@rstudio.com>
Diff between sparklyr versions 1.3.0 dated 2020-06-27 and 1.3.1 dated 2020-07-09
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 23 ++++++++++++----------- R/dplyr_hof.R | 2 +- 4 files changed, 19 insertions(+), 18 deletions(-)
Title: 'hms' Based Timer
Description: Tracks elapsed clock time using a `hms::hms()` scalar,
which if running has an attribute named start
that specifies the system time when the timer was started.
The elapsed time is the value of the scalar
plus the difference between the current system time
and the system time when the timer was started.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between hmstimer versions 0.0.2 dated 2019-07-24 and 0.1.0 dated 2020-07-09
hmstimer-0.0.2/hmstimer/R/check.R |only hmstimer-0.1.0/hmstimer/DESCRIPTION | 20 ++- hmstimer-0.1.0/hmstimer/LICENSE | 2 hmstimer-0.1.0/hmstimer/MD5 | 64 ++++++++-- hmstimer-0.1.0/hmstimer/NAMESPACE | 6 + hmstimer-0.1.0/hmstimer/NEWS.md | 9 + hmstimer-0.1.0/hmstimer/R/ceiling.R |only hmstimer-0.1.0/hmstimer/R/chk.R |only hmstimer-0.1.0/hmstimer/R/elapsed.R |only hmstimer-0.1.0/hmstimer/R/floor.R |only hmstimer-0.1.0/hmstimer/R/format.R |only hmstimer-0.1.0/hmstimer/R/hms-timer.R |only hmstimer-0.1.0/hmstimer/R/hmstimer-package.R | 1 hmstimer-0.1.0/hmstimer/R/is-started.R |only hmstimer-0.1.0/hmstimer/R/is-stopped.R |only hmstimer-0.1.0/hmstimer/R/namespace.R |only hmstimer-0.1.0/hmstimer/R/params.R |only hmstimer-0.1.0/hmstimer/R/reset.R |only hmstimer-0.1.0/hmstimer/R/round.R |only hmstimer-0.1.0/hmstimer/R/start.R |only hmstimer-0.1.0/hmstimer/R/stop.R |only hmstimer-0.1.0/hmstimer/R/timer.R | 102 ++--------------- hmstimer-0.1.0/hmstimer/R/utils.R | 4 hmstimer-0.1.0/hmstimer/README.md | 77 +++++-------- hmstimer-0.1.0/hmstimer/inst |only hmstimer-0.1.0/hmstimer/man/figures |only hmstimer-0.1.0/hmstimer/man/hms-timer.Rd |only hmstimer-0.1.0/hmstimer/man/hmstimer-package.Rd | 10 + hmstimer-0.1.0/hmstimer/man/params.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_ceiling.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_elapsed.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_floor.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_format.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_is_started.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_is_stopped.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_reset.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_round.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_start.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_stop.Rd |only hmstimer-0.1.0/hmstimer/man/tmr_timer.Rd | 84 +++----------- hmstimer-0.1.0/hmstimer/tests/testthat/test-ceiling.R |only hmstimer-0.1.0/hmstimer/tests/testthat/test-floor.R |only hmstimer-0.1.0/hmstimer/tests/testthat/test-format.R |only hmstimer-0.1.0/hmstimer/tests/testthat/test-reset.R |only hmstimer-0.1.0/hmstimer/tests/testthat/test-round.R |only hmstimer-0.1.0/hmstimer/tests/testthat/test-timer.R | 106 +++++++++--------- 46 files changed, 210 insertions(+), 275 deletions(-)
Title: Nested and Crossed Block Designs for Factorial and Unstructured
Treatment Sets
Description: Constructs D-optimal or near D-optimal treatment and block designs for linear
treatment models with crossed or nested block factors. The treatment design can be any
arbitrary linear model defined by a treatment model formula and the block design can be
any feasible combination of crossed or nested block factors. The block design factors
are optimized sequentially and the levels of each successive block factor are optimized
within the levels of each preceding block factor. Crossed block designs with non-singular
interaction effects are optimized using a weighting scheme that allows for differential
weighting of first and second-order block effects. Outputs include a table showing the
allocation of treatments to blocks and tables showing the achieved D-efficiency factors
for each block and treatment design.
Author: R. N. Edmondson.
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 4.2 dated 2020-06-11 and 4.3 dated 2020-07-09
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/blocks.r | 1 - R/design.r | 12 +++++------- 4 files changed, 13 insertions(+), 16 deletions(-)
Title: Functions Useful in the Design and ANOVA of Experiments
Description: The content falls into the following groupings: (i) Data, (ii)
Factor manipulation functions, (iii) Design functions, (iv) ANOVA functions, (v)
Matrix functions, (vi) Projector and canonical efficiency functions, and (vii)
Miscellaneous functions. There is a vignette describing how to use the
design functions for randomizing and assessing designs available as a
vignette called 'DesignNotes'. The ANOVA functions facilitate the extraction of
information when the 'Error' function has been used in the call to 'aov'.
The package 'dae' can also be installed from
<http://chris.brien.name/rpackages/>.
Author: Chris Brien [aut, cre] (<https://orcid.org/0000-0003-0581-1817>)
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between dae versions 3.1-23 dated 2020-03-16 and 3.1-27 dated 2020-07-09
DESCRIPTION | 12 +-- MD5 | 33 ++++----- NAMESPACE | 1 R/designGGPlot.v1.r | 14 ++- R/mat.functions.r | 150 ++++++++++++++++++++++------------------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 18 ++++ inst/doc/DesignNotes.pdf |binary inst/doc/dae-manual.pdf |binary man/dae-package.Rd | 7 + man/designAmeasures.Rd | 9 +- man/designGGPlot.Rd | 4 - man/designRandomize.Rd | 7 + man/mat.Vpredicts.Rd | 16 ++-- man/mat.random.Rd |only tests/testthat.R | 2 tests/testthat/testAmeasures.r | 8 +- 18 files changed, 170 insertions(+), 111 deletions(-)
More information about ActivePathways at CRAN
Permanent link
Title: Dynamic Generation of Scientific Reports
Description: The RSP markup language makes any text-based document come alive. RSP provides a powerful markup for controlling the content and output of LaTeX, HTML, Markdown, AsciiDoc, Sweave and knitr documents (and more), e.g. 'Today's date is <%=Sys.Date()%>'. Contrary to many other literate programming languages, with RSP it is straightforward to loop over mixtures of code and text sections, e.g. in month-by-month summaries. RSP has also several preprocessing directives for incorporating static and dynamic contents of external files (local or online) among other things. Functions rstring() and rcat() make it easy to process RSP strings, rsource() sources an RSP file as it was an R script, while rfile() compiles it (even online) into its final output format, e.g. rfile('report.tex.rsp') generates 'report.pdf' and rfile('report.md.rsp') generates 'report.html'. RSP is ideal for self-contained scientific reports and R package vignettes. It's easy to use - if you know how to write an R script, you'll be up and running within minutes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.rsp versions 0.43.2 dated 2019-10-17 and 0.44.0 dated 2020-07-09
R.rsp-0.43.2/R.rsp/inst/doc/incl |only R.rsp-0.43.2/R.rsp/inst/doc/templates |only R.rsp-0.44.0/R.rsp/DESCRIPTION | 10 R.rsp-0.44.0/R.rsp/MD5 | 70 ++-- R.rsp-0.44.0/R.rsp/NAMESPACE | 3 R.rsp-0.44.0/R.rsp/NEWS | 24 + R.rsp-0.44.0/R.rsp/R/000-rsp-brackets.R |only R.rsp-0.44.0/R.rsp/R/RspCode.R | 4 R.rsp-0.44.0/R.rsp/R/RspComment.R | 5 R.rsp-0.44.0/R.rsp/R/RspDirective.R | 6 R.rsp-0.44.0/R.rsp/R/RspDocument.toR.R | 11 R.rsp-0.44.0/R.rsp/R/RspParser.R | 26 - R.rsp-0.44.0/R.rsp/R/RspRSourceCodeFactory.R | 2 R.rsp-0.44.0/R.rsp/R/RspShSourceCode.R | 2 R.rsp-0.44.0/R.rsp/R/RspShSourceCodeFactory.R | 10 R.rsp-0.44.0/R.rsp/R/RspString.R | 2 R.rsp-0.44.0/R.rsp/R/buildVignette.R | 2 R.rsp-0.44.0/R.rsp/R/parseInternetMediaType.R | 8 R.rsp-0.44.0/R.rsp/R/rcat.R | 7 R.rsp-0.44.0/R.rsp/R/rfile.R | 142 +++++++++- R.rsp-0.44.0/R.rsp/R/rstring.R | 3 R.rsp-0.44.0/R.rsp/R/utils.R | 4 R.rsp-0.44.0/R.rsp/build/vignette.rds |binary R.rsp-0.44.0/R.rsp/inst/doc/Dynamic_document_creation_using_RSP.pdf |binary R.rsp-0.44.0/R.rsp/inst/doc/RSP_intro.html | 14 R.rsp-0.44.0/R.rsp/inst/doc/RSP_refcard.pdf |binary R.rsp-0.44.0/R.rsp/inst/doc/R_packages-LaTeX_vignettes.pdf |binary R.rsp-0.44.0/R.rsp/inst/doc/R_packages-Vignettes_prior_to_R300.pdf |binary R.rsp-0.44.0/R.rsp/inst/rsp_tests_experimental/birth-sh.txt | 12 R.rsp-0.44.0/R.rsp/inst/rsp_tests_experimental/birth-sh.txt.rsp | 7 R.rsp-0.44.0/R.rsp/man/R.rsp-package.Rd | 4 R.rsp-0.44.0/R.rsp/man/RspShSourceCode.Rd | 3 R.rsp-0.44.0/R.rsp/man/rcat.Rd | 3 R.rsp-0.44.0/R.rsp/man/rfile.Rd | 6 R.rsp-0.44.0/R.rsp/man/toR.RspDocument.Rd | 2 35 files changed, 303 insertions(+), 89 deletions(-)
Title: Sensitivity Analysis for Publication Bias in Meta-Analyses
Description: Performs sensitivity analysis for publication bias in meta-analyses (per Mathur & VanderWeele, 2020 [<https://osf.io/s9dp6>]).
These analyses enable statements such as: "For publication bias to shift the observed point estimate to the null,
'significant' results would need to be at least 30-fold more likely to be published than negative or 'nonsignificant'
results." Comparable statements can be made regarding shifting to a chosen non-null value or shifting the confidence
interval. Provides a worst-case meta-analytic point estimate under maximal publication bias obtained simply by conducting
a standard meta-analysis of only the negative and "nonsignificant" studies.
Author: Maya B. Mathur, Tyler J. VanderWeele
Maintainer: Maya B. Mathur <mmathur@stanford.edu>
Diff between PublicationBias versions 2.0.0 dated 2020-03-30 and 2.1.0 dated 2020-07-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/functions.R | 42 ++++++++++++++++++++++++++---------------- man/corrected_meta.Rd | 17 +++++++++++++---- man/significance_funnel.Rd | 20 +++++++++++++++----- man/svalue.Rd | 15 ++++++++++++--- 6 files changed, 75 insertions(+), 37 deletions(-)
More information about PublicationBias at CRAN
Permanent link
Title: Estimate Parameters in the Generalized SBM
Description: Given an adjacency matrix drawn from a Generalized Stochastic Block Model with missing observations, this package robustly estimates the probabilities of connection between nodes and detects outliers nodes, as describes in Gaucher, Klopp and Robin (2019) <arXiv:1911.13122>.
Author: Genevieve Robin [aut],
Solenne Gaucher [aut, cre]
Maintainer: Solenne Gaucher <solenne.gaucher@math.u-psud.fr>
Diff between gsbm versions 0.1.0 dated 2020-02-28 and 0.1.1 dated 2020-07-09
DESCRIPTION | 12 +- MD5 | 36 +++--- NAMESPACE | 1 NEWS.md |only R/PrimarySchool.R |only R/blogosphere.R | 4 R/cross_validation.R | 6 - R/gsbm_mcgd.R | 28 ++--- build/vignette.rds |binary data/PrimarySchool.RData |only inst/doc/PrimarySchool.R |only inst/doc/PrimarySchool.Rmd |only inst/doc/PrimarySchool.html |only inst/doc/blogosphere.R | 8 - inst/doc/blogosphere.html | 109 ++++++++----------- inst/doc/les_miserables.R | 10 - inst/doc/les_miserables.html | 240 +++++++++++++++++++++---------------------- man/PrimarySchool.Rd |only man/blogosphere.Rd | 10 + man/crossval.Rd | 6 - man/gsbm_mcgd.Rd | 2 man/les_miserables.Rd | 6 - vignettes/PrimarySchool.Rmd |only 23 files changed, 242 insertions(+), 236 deletions(-)
Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Jakub Nowosad [ctb],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb],
John Clouse [ctb],
Robin Lovelace [ctb],
Jannes Muenchow [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 3.0 dated 2020-04-09 and 3.1 dated 2020-07-09
tmap-3.0/tmap/R/add_data_to_gps.R |only tmap-3.0/tmap/R/add_leaflet_titles.R |only tmap-3.0/tmap/R/cat2pal.R |only tmap-3.0/tmap/R/cat2shape.R |only tmap-3.0/tmap/R/check_shape.R |only tmap-3.0/tmap/R/determine_asp_ratios.R |only tmap-3.0/tmap/R/facet_functions.R |only tmap-3.0/tmap/R/gather_shape_info.R |only tmap-3.0/tmap/R/get_sepia_col.R |only tmap-3.0/tmap/R/gridplot.R |only tmap-3.0/tmap/R/grob_mod.R |only tmap-3.0/tmap/R/is_num_string.R |only tmap-3.0/tmap/R/legend_hist.R |only tmap-3.0/tmap/R/legend_prepare.R |only tmap-3.0/tmap/R/lines_midpoints.R |only tmap-3.0/tmap/R/meta_plot.R |only tmap-3.0/tmap/R/meta_plot_items.R |only tmap-3.0/tmap/R/num2pal.R |only tmap-3.0/tmap/R/num2shape.R |only tmap-3.0/tmap/R/order_x.R |only tmap-3.0/tmap/R/plot_all.R |only tmap-3.0/tmap/R/plot_misc_functions.R |only tmap-3.0/tmap/R/pointLabelGrid.R |only tmap-3.0/tmap/R/prearrange_element_order.R |only tmap-3.0/tmap/R/prepare_vp.R |only tmap-3.0/tmap/R/preprocess_facet_layout.R |only tmap-3.0/tmap/R/preprocess_gt.R |only tmap-3.0/tmap/R/preprocess_shapes.R |only tmap-3.0/tmap/R/sf_functions.R |only tmap-3.0/tmap/R/split_g.R |only tmap-3.0/tmap/R/stars_misc.R |only tmap-3.0/tmap/R/symbol_functions.R |only tmap-3.0/tmap/R/text_functions.R |only tmap-3.1/tmap/DESCRIPTION | 18 tmap-3.1/tmap/MD5 | 214 +++---- tmap-3.1/tmap/NAMESPACE | 6 tmap-3.1/tmap/NEWS | 10 tmap-3.1/tmap/R/grid_shp.R | 89 --- tmap-3.1/tmap/R/map_cat2pal.R |only tmap-3.1/tmap/R/map_cat2shape.R |only tmap-3.1/tmap/R/map_num2pal.R |only tmap-3.1/tmap/R/map_num2shape.R |only tmap-3.1/tmap/R/misc_grid.R |only tmap-3.1/tmap/R/misc_sf.R |only tmap-3.1/tmap/R/misc_stars.R |only tmap-3.1/tmap/R/misc_text.R |only tmap-3.1/tmap/R/pkg.R | 4 tmap-3.1/tmap/R/plot_1.R |only tmap-3.1/tmap/R/plot_attributes.R |only tmap-3.1/tmap/R/plot_grid.R |only tmap-3.1/tmap/R/plot_legend.R |only tmap-3.1/tmap/R/plot_legend_hist.R |only tmap-3.1/tmap/R/plot_legend_prepare.R |only tmap-3.1/tmap/R/plot_map.R | 6 tmap-3.1/tmap/R/plot_meta.R |only tmap-3.1/tmap/R/plot_n.R |only tmap-3.1/tmap/R/plot_symbol_misc.R |only tmap-3.1/tmap/R/plot_symbols.R |only tmap-3.1/tmap/R/plot_text.R |only tmap-3.1/tmap/R/plot_text_pointLabelGrid.R |only tmap-3.1/tmap/R/pre_check_shape.R |only tmap-3.1/tmap/R/pre_gather_shape_info.R |only tmap-3.1/tmap/R/pre_order_x.R |only tmap-3.1/tmap/R/pre_prepare_vp.R |only tmap-3.1/tmap/R/pre_process_facet_layout.R |only tmap-3.1/tmap/R/pre_process_gt.R |only tmap-3.1/tmap/R/pre_process_shapes.R |only tmap-3.1/tmap/R/pre_split_x.R |only tmap-3.1/tmap/R/print.R | 3 tmap-3.1/tmap/R/print_shortcut.R | 10 tmap-3.1/tmap/R/print_tmap.R | 75 +- tmap-3.1/tmap/R/process_add_data_to_gps.R |only tmap-3.1/tmap/R/process_aes.R | 32 - tmap-3.1/tmap/R/process_breaks.R |only tmap-3.1/tmap/R/process_determine_asp_ratios.R |only tmap-3.1/tmap/R/process_fill.R | 9 tmap-3.1/tmap/R/process_get_arrangement.R |only tmap-3.1/tmap/R/process_gps.R | 9 tmap-3.1/tmap/R/process_layers.R | 11 tmap-3.1/tmap/R/process_limit_nx.R |only tmap-3.1/tmap/R/process_lwd_aes.R | 3 tmap-3.1/tmap/R/process_meta.R | 7 tmap-3.1/tmap/R/process_raster.R | 12 tmap-3.1/tmap/R/process_shape_aes.R | 4 tmap-3.1/tmap/R/process_shapes.R | 37 - tmap-3.1/tmap/R/process_size_aes.R | 2 tmap-3.1/tmap/R/process_split_g.R |only tmap-3.1/tmap/R/process_symbols.R | 8 tmap-3.1/tmap/R/process_tm.R | 15 tmap-3.1/tmap/R/qtm.R | 39 - tmap-3.1/tmap/R/tm_add_legend.R | 11 tmap-3.1/tmap/R/tm_layers.R | 23 tmap-3.1/tmap/R/tm_layout.R | 5 tmap-3.1/tmap/R/tm_misc_elements.R | 29 - tmap-3.1/tmap/R/tm_shape.R | 10 tmap-3.1/tmap/R/tm_view.R | 2 tmap-3.1/tmap/R/tmap_arrange.R | 10 tmap-3.1/tmap/R/tmap_icons.R | 2 tmap-3.1/tmap/R/tmap_mode.R | 22 tmap-3.1/tmap/R/tmap_options.R | 16 tmap-3.1/tmap/R/tmap_save.R | 25 tmap-3.1/tmap/R/tmap_tip.R | 69 +- tmap-3.1/tmap/R/view_add_leaflet_titles.R |only tmap-3.1/tmap/R/view_add_legend.R |only tmap-3.1/tmap/R/view_format_popups.R |only tmap-3.1/tmap/R/view_functions.R |only tmap-3.1/tmap/R/view_set_bounds.R |only tmap-3.1/tmap/R/view_tmap.R | 594 +++----------------- tmap-3.1/tmap/R/xxx_scales.R | 225 ------- tmap-3.1/tmap/build/create_rivers.R | 14 tmap-3.1/tmap/build/create_world.R | 1 tmap-3.1/tmap/build/vignette.rds |binary tmap-3.1/tmap/data/rivers.rda |binary tmap-3.1/tmap/inst/doc/tmap-JSS-code.Rmd | 4 tmap-3.1/tmap/inst/doc/tmap-JSS-code.html | 722 +++++++++++++------------ tmap-3.1/tmap/inst/doc/tmap-changes.Rmd | 2 tmap-3.1/tmap/inst/doc/tmap-changes.html | 174 +++--- tmap-3.1/tmap/inst/doc/tmap-getstarted.R | 7 tmap-3.1/tmap/inst/doc/tmap-getstarted.Rmd | 36 - tmap-3.1/tmap/inst/doc/tmap-getstarted.html | 316 +++++----- tmap-3.1/tmap/inst/tips.txt | 42 + tmap-3.1/tmap/man/land.Rd | 2 tmap-3.1/tmap/man/qtm.Rd | 2 tmap-3.1/tmap/man/tm_add_legend.Rd | 47 + tmap-3.1/tmap/man/tm_compass.Rd | 6 tmap-3.1/tmap/man/tm_facets.Rd | 2 tmap-3.1/tmap/man/tm_layout.Rd | 4 tmap-3.1/tmap/man/tm_lines.Rd | 5 tmap-3.1/tmap/man/tm_mouse_coordinates.Rd |only tmap-3.1/tmap/man/tm_polygons.Rd | 12 tmap-3.1/tmap/man/tm_raster.Rd | 2 tmap-3.1/tmap/man/tm_scale_bar.Rd | 6 tmap-3.1/tmap/man/tm_shape.Rd | 12 tmap-3.1/tmap/man/tm_symbols.Rd | 10 tmap-3.1/tmap/man/tm_text.Rd | 2 tmap-3.1/tmap/man/tm_view.Rd | 5 tmap-3.1/tmap/man/tmap-package.Rd | 2 tmap-3.1/tmap/man/tmap_design_mode.Rd |only tmap-3.1/tmap/man/tmap_mode.Rd | 5 tmap-3.1/tmap/man/tmap_options.Rd | 13 tmap-3.1/tmap/man/tmap_save.Rd | 10 tmap-3.1/tmap/man/tmap_tip.Rd | 7 tmap-3.1/tmap/vignettes/tmap-JSS-code.Rmd | 4 tmap-3.1/tmap/vignettes/tmap-changes.Rmd | 2 tmap-3.1/tmap/vignettes/tmap-getstarted.Rmd | 36 - 145 files changed, 1479 insertions(+), 1701 deletions(-)
Title: Regression Spline Functions and Classes
Description: Constructs B-splines and its integral, M-splines
and its integral (I-splines), convex splines (C-splines),
generalized Bernstein polynomials, and their derivatives.
It also contains a C++ head-only library integrated with Rcpp.
See De Boor (1978) <doi:10.1002/zamm.19800600129>,
Ramsay (1988) <doi:10.1214/ss/1177012761>, and
Meyer (2008) <doi:10.1214/08-AOAS167>
for more information about the spline basis.
Author: Wenjie Wang [aut, cre] (<https://orcid.org/0000-0003-0363-3180>),
Jun Yan [aut] (<https://orcid.org/0000-0003-4401-7296>)
Maintainer: Wenjie Wang <wenjie.2.wang@uconn.edu>
Diff between splines2 versions 0.2.8 dated 2018-06-14 and 0.3.0 dated 2020-07-09
splines2-0.2.8/splines2/man/print.Rd |only splines2-0.2.8/splines2/tests/testthat |only splines2-0.2.8/splines2/tests/testthat.R |only splines2-0.3.0/splines2/DESCRIPTION | 41 +- splines2-0.3.0/splines2/MD5 | 117 +++-- splines2-0.3.0/splines2/NAMESPACE | 9 splines2-0.3.0/splines2/NEWS.md | 36 + splines2-0.3.0/splines2/R/RcppExports.R |only splines2-0.3.0/splines2/R/bSpline.R | 317 ++++----------- splines2-0.3.0/splines2/R/bernsteinPoly.R |only splines2-0.3.0/splines2/R/cSpline.R | 337 +++++++--------- splines2-0.3.0/splines2/R/dbs.R | 266 ++++--------- splines2-0.3.0/splines2/R/deriv.R | 194 +++------ splines2-0.3.0/splines2/R/iSpline.R | 271 +++++-------- splines2-0.3.0/splines2/R/ibs.R | 194 ++++----- splines2-0.3.0/splines2/R/mSpline.R | 214 +++++----- splines2-0.3.0/splines2/R/misc.R | 88 +--- splines2-0.3.0/splines2/R/predict.R | 94 +--- splines2-0.3.0/splines2/R/print.R | 54 -- splines2-0.3.0/splines2/R/splines2-package.R | 56 +- splines2-0.3.0/splines2/README.md | 196 +++++++-- splines2-0.3.0/splines2/build/vignette.rds |binary splines2-0.3.0/splines2/inst/CITATION | 23 - splines2-0.3.0/splines2/inst/bib/splines2.bib | 43 ++ splines2-0.3.0/splines2/inst/doc/splines2-intro.R | 145 ++++--- splines2-0.3.0/splines2/inst/doc/splines2-intro.Rmd | 338 +++++++++-------- splines2-0.3.0/splines2/inst/doc/splines2-intro.html | 321 ++++++++++------ splines2-0.3.0/splines2/inst/doc/splines2-wi-rcpp.Rmd |only splines2-0.3.0/splines2/inst/doc/splines2-wi-rcpp.html |only splines2-0.3.0/splines2/inst/examples |only splines2-0.3.0/splines2/inst/include |only splines2-0.3.0/splines2/inst/tinytest |only splines2-0.3.0/splines2/inst/v0.2.8.R |only splines2-0.3.0/splines2/man/bSpline.Rd | 92 ++-- splines2-0.3.0/splines2/man/bernsteinPoly.Rd |only splines2-0.3.0/splines2/man/cSpline.Rd | 87 ++-- splines2-0.3.0/splines2/man/dbs.Rd | 94 ++-- splines2-0.3.0/splines2/man/deriv.Rd | 70 +-- splines2-0.3.0/splines2/man/iSpline.Rd | 80 ++-- splines2-0.3.0/splines2/man/ibs.Rd | 90 ++-- splines2-0.3.0/splines2/man/mSpline.Rd | 78 ++- splines2-0.3.0/splines2/man/predict.Rd | 24 - splines2-0.3.0/splines2/man/splines2.Rd | 29 + splines2-0.3.0/splines2/src |only splines2-0.3.0/splines2/tests/tinytest.R |only splines2-0.3.0/splines2/vignettes/splines2-intro.Rmd | 338 +++++++++-------- splines2-0.3.0/splines2/vignettes/splines2-wi-rcpp.Rmd |only 47 files changed, 2167 insertions(+), 2169 deletions(-)
Title: Client for OGC Sensor Observation Services
Description: A client for Sensor Observation Services (SOS, see
<https://www.opengeospatial.org/standards/sos>) as specified by the
Open Geospatial Consortium (OGC). With the package users can
retrieve (meta)data from SOS instances and interactively
create requests for near real-time observation
data based on the available sensors, phenomena, observations etc.
using thematic, temporal, and spatial filtering.
Author: Daniel Nuest [cre, aut] (<https://orcid.org/0000-0002-0024-5046>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>),
Ben Graeler [aut] (<https://orcid.org/0000-0001-5443-4304>),
Benjamin Pross [aut],
Eike Hinderk Juerrens [aut],
52°North Initiative for Geospatial Open Source Software GmbH [cph]
Maintainer: Daniel Nuest <daniel.nuest@uni-muenster.de>
Diff between sos4R versions 0.4.1 dated 2020-06-10 and 0.4.2 dated 2020-07-09
DESCRIPTION | 8 - MD5 | 38 ++--- NEWS.md | 4 build/vignette.rds |binary inst/doc/sos4R-vignette-02-ogc-sos.html | 20 ++ inst/doc/sos4R-vignette-03-sos-operations.html | 167 +++++++++++----------- inst/doc/sos4R-vignette-04-extensions.html | 55 +++++-- inst/doc/sos4R-vignette-05-wrapper-functions.html | 64 +++++--- inst/doc/sos4R.pdf |binary man/Coercion.Rd | 2 man/DescribeSensor.Rd | 3 man/SML.Rd | 2 man/SOS.Rd | 2 man/SosObservationOffering.Rd | 2 man/getData.Rd | 2 man/phenomena.Rd | 2 man/sites.Rd | 4 man/sos4R-package.Rd | 6 tests/testthat/test_getobservation.R | 1 vignettes/sos4R.html | 44 +++-- 20 files changed, 264 insertions(+), 162 deletions(-)
Title: Detecting Politeness Features in Text
Description: Detecting markers of politeness in English natural language. This package allows researchers to easily visualize and quantify politeness between groups of documents. This package combines prior research on the linguistic markers of politeness (Brown & Levinson, 1987 <http://psycnet.apa.org/record/1987-97641-000>; Danescu-Niculescu-Mizil et al., 2013 <arXiv:1306.6078>; Voigt et al., 2017 <doi:10.1073/pnas.1702413114>). We thank the Spencer Foundation, the Hewlett Foundation, and Harvard's Institute for Quantitative Social Science for support.
Author: Mike Yeomans, Alejandro Kantor, Dustin Tingley
Maintainer: Mike Yeomans <mk.yeomans@gmail.com>
Diff between politeness versions 0.6.0 dated 2020-04-18 and 0.6.1 dated 2020-07-09
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- R/politenessPlot.R | 15 +++++++++++---- build/vignette.rds |binary inst/doc/politeness.html | 16 ++++++++-------- man/bowl_offers.Rd | 6 ++++-- man/feature_table.Rd | 4 +++- man/hedge_list.Rd | 4 +++- man/negative_list.Rd | 4 +++- man/phone_offers.Rd | 6 ++++-- man/polite_dicts.Rd | 4 +++- man/politenessPlot.Rd | 5 ++++- man/positive_list.Rd | 4 +++- man/receptive_model.Rd | 4 +++- 14 files changed, 66 insertions(+), 40 deletions(-)
Title: Phylogenetic Tree Search Using Custom Optimality Criteria
Description: Searches for phylogenetic trees that are optimal using a
user-defined criterion.
Handles inapplicable data using the algorithm of
Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.
Implements Profile Parsimony (Faith and Trueman, 2001)
<doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969)
<doi:10.2307/2412182>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Martin Brazeau [cph] (<https://orcid.org/0000-0002-0650-1282>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeSearch versions 0.4.2 dated 2020-07-07 and 0.4.3 dated 2020-07-09
DESCRIPTION | 6 +- MD5 | 23 ++++---- NEWS.md | 5 + build/partial.rdb |binary inst/doc/getting-started.html | 28 ++------- inst/doc/inapplicable.html | 112 ++++++++++++++++----------------------- inst/doc/profile-scores.html | 20 ------ inst/doc/profile.html | 98 ++++++++++++++-------------------- src/RMorphy.c | 27 +++++++-- src/RMorphy.h | 2 tests/testthat/test-RMorphy.R |only tests/testthat/test-TreeSearch.R | 102 +++++++++++++++++++---------------- tests/testthat/test-pp-ICS.R | 28 ++++++--- 13 files changed, 216 insertions(+), 235 deletions(-)
Title: Find All TODO Comments and More
Description: This is a simple addin to 'RStudio' that finds all 'TODO', 'FIX ME', 'CHANGED' etc. comments in your project and shows them as a markers list.
Author: Dominik Krzemiński [aut, cre]
Maintainer: Dominik Krzemiński <raymon92@gmail.com>
Diff between todor versions 0.1.0 dated 2020-03-03 and 0.1.1 dated 2020-07-09
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NAMESPACE | 1 + R/todor.R | 25 +++++++++++++++++++++---- inst/rstudio/addins.dcf | 5 +++++ man/todor_file_addin.Rd |only 6 files changed, 36 insertions(+), 12 deletions(-)
Title: Alt String Implementation
Description: Provides an extendable and performant 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph],
Phillip Hazel [ctb] (Bundled PCRE2 code),
Zoltan Herczeg [ctb, cph] (Bundled PCRE2 code),
University of Cambridge [cph] (Bundled PCRE2 code),
Tilera Corporation [cph] (Stack-less Just-In-Time compiler bundled with
PCRE2),
Yann Collet [ctb, cph] (Yann Collet is the author of the bundled xxHash
code)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between stringfish versions 0.13.2 dated 2020-07-08 and 0.13.3 dated 2020-07-09
stringfish-0.13.2/stringfish/src/xxhash/xxh3.h |only stringfish-0.13.3/stringfish/ChangeLog | 3 +++ stringfish-0.13.3/stringfish/DESCRIPTION | 8 ++++---- stringfish-0.13.3/stringfish/MD5 | 15 +++++++-------- stringfish-0.13.3/stringfish/configure | 1 + stringfish-0.13.3/stringfish/configure.ac | 1 + stringfish-0.13.3/stringfish/inst/doc/vignette.html | 2 +- stringfish-0.13.3/stringfish/src/sf_functions.cpp | 4 ++-- stringfish-0.13.3/stringfish/src/xxhash/xxhash.h | 2 +- 9 files changed, 20 insertions(+), 16 deletions(-)
Title: Optimal Stratification in Stratified Sampling
Description: An Optimization Algorithm Applied to
Stratification Problem.This function aims
at constructing optimal strata with an optimization algorithm
based on a global optimisation technique called vns.
Author: Leonardo de Lima, Jose Brito, Pedro Gonzalez and Breno Oliveira
Maintainer: Jose Brito <jambrito@gmail.com>
Diff between stratvns versions 1.0 dated 2017-05-27 and 1.1 dated 2020-07-09
stratvns-1.0/stratvns/R/EVP.R |only stratvns-1.0/stratvns/man/EVP.Rd |only stratvns-1.1/stratvns/DESCRIPTION | 28 +++++++++++----------------- stratvns-1.1/stratvns/MD5 | 19 +++++++++++++++---- stratvns-1.1/stratvns/NAMESPACE | 14 +++++++------- stratvns-1.1/stratvns/R/STRATENUM.R |only stratvns-1.1/stratvns/R/STRATVNS.R |only stratvns-1.1/stratvns/R/U1.R |only stratvns-1.1/stratvns/R/U15.R |only stratvns-1.1/stratvns/R/U21.R |only stratvns-1.1/stratvns/data |only stratvns-1.1/stratvns/man/STRATENUM.Rd |only stratvns-1.1/stratvns/man/STRATVNS.Rd |only stratvns-1.1/stratvns/man/U1.Rd |only stratvns-1.1/stratvns/man/U15.Rd |only stratvns-1.1/stratvns/man/U21.Rd |only 16 files changed, 33 insertions(+), 28 deletions(-)
Title: Robust Gaussian Stochastic Process Emulation
Description: Robust parameter estimation and prediction of Gaussian stochastic process emulators. It allows for robust parameter estimation and prediction using Gaussian stochastic process emulator. It also implements the parallel partial Gaussian stochastic process emulator for computer model with massive outputs See the reference: Mengyang Gu and Jim Berger, 2016, Annals of Applied Statistics; Mengyang Gu, Xiaojing Wang and Jim Berger, 2018, Annals of Statistics.
Author: Mengyang Gu [aut, cre],
Jesus Palomo [aut],
James Berger [aut]
Maintainer: Mengyang Gu <mengyang@pstat.ucsb.edu>
Diff between RobustGaSP versions 0.5.7 dated 2019-06-05 and 0.6.0 dated 2020-07-09
CHANGELOG | 11 DESCRIPTION | 10 MD5 | 69 +- NAMESPACE | 7 R/RcppExports.R | 56 + R/functions.R | 106 +++ R/ppgasp.R | 369 +++++++++++-- R/predict.R | 153 ++++- R/rgasp.R | 395 +++++++++++-- R/simulate.R | 110 +++ R/structure.R | 28 build/partial.rdb |binary man/RobustGaSP-package.Rd | 6 man/Sample.rgasp.Rd | 14 man/euclidean_distance.Rd |only man/generate_predictive_mean_cov.Rd | 12 man/log_marginal_lik.Rd | 3 man/log_marginal_lik_deriv.Rd | 4 man/log_marginal_lik_deriv_ppgasp.Rd | 4 man/log_profile_lik.Rd |only man/log_profile_lik_deriv.Rd |only man/log_profile_lik_deriv_ppgasp.Rd |only man/log_profile_lik_ppgasp.Rd |only man/periodic_exp_deriv.Rd |only man/periodic_exp_funct.Rd |only man/periodic_gauss_deriv.Rd |only man/periodic_gauss_funct.Rd |only man/pow_exp_funct.Rd | 6 man/ppgasp-class.Rd | 2 man/ppgasp.Rd | 34 + man/pred_rgasp.Rd | 14 man/predict.ppgasp.Rd | 27 man/predict.rgasp.Rd | 36 + man/rgasp-class.Rd | 2 man/rgasp.Rd | 72 ++ man/separable_kernel.Rd | 3 man/simulate.rgasp.Rd | 13 src/RcppExports.cpp | 196 ++++++ src/functions.cpp | 988 ++++++++++++++++++++++++++++++++--- src/init.c | 70 +- 40 files changed, 2441 insertions(+), 379 deletions(-)
Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also now included.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] (Contributions to Censored QR code),
Pin Tian Ng [ctb] (Contributions to Sparse QR code),
Blaise Melly [ctb] (Contributions to preprocessing code),
Achim Zeileis [ctb] (Contributions to dynrq code essentially identical
to his dynlm code),
Philip Grosjean [ctb] (Contributions to nlrq code),
Cleve Moler [ctb] (author of several linpack routines),
Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my
everlasting shame -- how could I have been so slow to adopt R!) and
for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.55 dated 2020-04-01 and 5.61 dated 2020-07-09
DESCRIPTION | 11 +- MD5 | 25 +++--- NAMESPACE | 5 - R/boot.R | 87 +++++++++++++++++++++ R/quantreg.R | 198 +++++++++++++++++++++++++++++++++++++++----------- R/rqss.R | 5 - build/vignette.rds |binary inst/ChangeLog | 25 ++++++ man/boot.rq.pxy.Rd |only man/plot.rqs.Rd | 2 man/rq.Rd | 54 +++++++++---- man/rq.fit.conquer.Rd |only man/rq.fit.pfn.Rd | 4 - man/rq.fit.ppro.Rd |only man/summary.rq.Rd | 7 + 15 files changed, 344 insertions(+), 79 deletions(-)
Title: Statistics and Metrics for Seismic Data
Description: Classes and functions for metrics calculation as part of the
'IRIS DMC MUSTANG' project. The functionality in this package
builds upon the base classes of the 'IRISSeismic' package.
Metrics include basic statistics as well as higher level
'health' metrics that can help identify problematic seismometers.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Mary Templeton [aut],
Gillian Sharer [aut, cre]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between IRISMustangMetrics versions 2.3.0 dated 2019-11-15 and 2.4.0 dated 2020-07-09
DESCRIPTION | 11 ++++++----- MD5 | 16 +++++++++++----- NAMESPACE | 3 +++ R/ISPAQUtils.R | 33 +++++++++++++++++++++++++++++++++ R/maxRangeMetric.R |only R/sampleRateChannelMetric.R |only R/sampleRateRespMetric.R |only man/IRISMustangMetrics-package.Rd | 7 ++++++- man/getSingleValueMetrics.Rd | 2 +- man/maxRangeMetric.Rd |only man/sampleRateChannelMetric.Rd |only man/sampleRateRespMetric.Rd |only 12 files changed, 60 insertions(+), 12 deletions(-)
More information about IRISMustangMetrics at CRAN
Permanent link
Title: Plotting, Smoothing and Growth Trait Extraction for Longitudinal
Data
Description: Assists in producing longitudinal or profile plots of measured
traits. These allow checks to be made for anomalous data and growth patterns
in the data to be explored. Smoothing of growth trends for individual plants
using smoothing splines is available for removing transient effects. There
are tools for diagnosing the adequacy of trait smoothing, either using this
package or other packages, such as those that fit nonlinear growth models.
A range of per-unit (pot, plant, plot) growth traits can be extracted from
longitudinal data, including single time-point smoothed trait values and
their growth rates, interval growth rates and other growth statistics, such
as maximum growth. The package is particularly suited to preparing data from
high-throughput phenotyping facilities, such as imaging data from a Lemna-Tec Scananalyzer 3D
(see <https://www.youtube.com/watch?v=MRAF_mAEa7E/> for more
information). The package 'growthPheno' can also be installed from
<http://chris.brien.name/rpackages/>.
Author: Chris Brien [aut, cre] (<https://orcid.org/0000-0003-0581-1817>)
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between growthPheno versions 1.0-22 dated 2020-03-18 and 1.0-26 dated 2020-07-09
DESCRIPTION | 20 ++++++------ MD5 | 44 ++++++++++++++------------- NAMESPACE | 1 R/dataCart_v2.r | 36 +++++++++++++--------- R/dataLongi_v9.r | 12 ++++--- build/partial.rdb |binary build/vignette.rds |binary data/RiceRaw.dat.rda |binary data/cart.dat.rda |binary data/exampleData.rda |binary data/tomato.dat.rda |binary inst/News.Rd | 18 +++++++++++ inst/doc/Rice.pdf |binary inst/doc/Rice.pdf.asis | 2 - inst/doc/Tomato.pdf |binary inst/doc/growthPheno-manual.pdf |binary man/growthPheno-pkg.Rd | 2 - man/plotMedianDeviations.Rd | 11 +++--- tests/testthat.R | 1 tests/testthat/data/0498_Rice_Plett_test.csv |only tests/testthat/testImportXL.r | 31 +++++++++++++++++++ tests/testthat/testProbeSmooth.r | 42 +++++++++++++++++++++++++ tests/testthat/testRiceNoPlots.r |only vignettes/Rice.pdf.asis | 2 - 24 files changed, 164 insertions(+), 58 deletions(-)
Title: Convert Statistical Objects into Tidy Tibbles
Description: Summarizes key information about statistical
objects in tidy tibbles. This makes it easy to report results, create
plots and consistently work with large numbers of models at once.
Broom provides three verbs that each provide different types of
information about a model. tidy() summarizes information about model
components such as coefficients of a regression. glance() reports
information about an entire model, such as goodness of fit measures
like AIC and BIC. augment() adds information about individual
observations to a dataset, such as fitted values or influence
measures.
Author: David Robinson [aut],
Alex Hayes [aut, cre] (<https://orcid.org/0000-0002-4985-5160>),
Simon Couch [aut],
Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>),
Derek Chiu [ctb],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Hadley Wickham [ctb],
Matthew Lincoln [ctb],
Alessandro Gasparini [ctb],
Lukasz Komsta [ctb],
Frederick Novometsky [ctb],
Wilson Freitas [ctb],
Michelle Evans [ctb],
Jason Cory Brunson [ctb],
Simon Jackson [ctb],
Ben Whalley [ctb],
Karissa Whiting [ctb],
Yves Rosseel [ctb],
Michael Kuehn [ctb],
Jorge Cimentada [ctb],
Erle Holgersen [ctb],
Karl Dunkle Werner [ctb] (<https://orcid.org/0000-0003-0523-7309>),
Ethan Christensen [ctb],
Steven Pav [ctb],
Paul PJ [ctb],
Ben Schneider [ctb],
Patrick Kennedy [ctb],
Lily Medina [ctb],
Brian Fannin [ctb],
Jason Muhlenkamp [ctb],
Matt Lehman [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Nic Crane [ctb],
Andrew Bates [ctb],
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>),
Hideaki Hayashi [ctb],
Luis Tobalina [ctb],
Annie Wang [ctb],
Wei Yang Tham [ctb],
Clara Wang [ctb],
Abby Smith [ctb] (<https://orcid.org/0000-0002-3207-0375>),
Jasper Cooper [ctb] (<https://orcid.org/0000-0002-8639-3188>),
E Auden Krauska [ctb] (<https://orcid.org/0000-0002-1466-5850>),
Alex Wang [ctb],
Malcolm Barrett [ctb] (<https://orcid.org/0000-0003-0299-5825>),
Charles Gray [ctb] (<https://orcid.org/0000-0002-9978-011X>),
Jared Wilber [ctb],
Vilmantas Gegzna [ctb] (<https://orcid.org/0000-0002-9500-5167>),
Eduard Szoecs [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Angus Moore [ctb],
Nick Williams [ctb],
Marius Barth [ctb] (<https://orcid.org/0000-0002-3421-6665>),
Bruna Wundervald [ctb] (<https://orcid.org/0000-0001-8163-220X>),
Joyce Cahoon [ctb] (<https://orcid.org/0000-0001-7217-4702>),
Grant McDermott [ctb] (<https://orcid.org/0000-0001-7883-8573>),
Kevin Zarca [ctb],
Shiro Kuriwaki [ctb] (<https://orcid.org/0000-0002-5687-2647>),
Lukas Wallrich [ctb] (<https://orcid.org/0000-0003-2121-5177>),
James Martherus [ctb] (<https://orcid.org/0000-0002-8285-3300>),
Chuliang Xiao [ctb] (<https://orcid.org/0000-0002-8466-9398>),
Joseph Larmarange [ctb],
Max Kuhn [ctb],
Michal Bojanowski [ctb],
Hakon Malmedal [ctb],
Clara Wang [ctb],
Sergio Oller [ctb],
Luke Sonnet [ctb],
Jim Hester [ctb],
Cory Brunson [ctb],
Ben Schneider [ctb],
Bernie Gray [ctb] (<https://orcid.org/0000-0001-9190-6032>),
Mara Averick [ctb],
Aaron Jacobs [ctb],
Andreas Bender [ctb],
Sven Templer [ctb],
Paul-Christian Buerkner [ctb],
Matthew Kay [ctb],
Erwan Le Pennec [ctb],
Johan Junkka [ctb],
Hao Zhu [ctb],
Benjamin Soltoff [ctb],
Zoe Wilkinson Saldana [ctb],
Tyler Littlefield [ctb],
Charles T. Gray [ctb],
Shabbh E. Banks [ctb],
Serina Robinson [ctb],
Roger Bivand [ctb],
Riinu Ots [ctb],
Nicholas Williams [ctb],
Nina Jakobsen [ctb],
Michael Weylandt [ctb],
Lisa Lendway [ctb],
Karl Hailperin [ctb],
Josue Rodriguez [ctb],
Jenny Bryan [ctb],
Chris Jarvis [ctb],
Greg Macfarlane [ctb],
Brian Mannakee [ctb],
Drew Tyre [ctb],
Shreyas Singh [ctb],
Laurens Geffert [ctb],
Hong Ooi [ctb],
Henrik Bengtsson [ctb],
Eduard Szocs [ctb],
David Hugh-Jones [ctb],
Matthieu Stigler [ctb]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between broom versions 0.5.6 dated 2020-04-20 and 0.7.0 dated 2020-07-09
broom-0.5.6/broom/R/base-data-frame-tidiers.R |only broom-0.5.6/broom/R/base-matrix-tidiers.R |only broom-0.5.6/broom/R/base-summary-tidiers.R |only broom-0.5.6/broom/R/base-vector-tidiers.R |only broom-0.5.6/broom/R/bootstrap.R |only broom-0.5.6/broom/R/brms-tidiers.R |only broom-0.5.6/broom/R/data-argument-glossary.R |only broom-0.5.6/broom/R/data-column-glossary.R |only broom-0.5.6/broom/R/dplyr-rowwise-df-tidiers.R |only broom-0.5.6/broom/R/lme4-tidiers.R |only broom-0.5.6/broom/R/mcmc-tidiers.R |only broom-0.5.6/broom/R/nlme-tidiers.R |only broom-0.5.6/broom/R/ordinal-tidiers.R |only broom-0.5.6/broom/R/rstanarm-tidiers.R |only broom-0.5.6/broom/R/speedglm-tidiers.R |only broom-0.5.6/broom/R/stats-tidiers.R |only broom-0.5.6/broom/data |only broom-0.5.6/broom/inst/doc/adding-tidiers.R |only broom-0.5.6/broom/inst/doc/kmeans.R |only broom-0.5.6/broom/inst/extdata |only broom-0.5.6/broom/man/argument_glossary.Rd |only broom-0.5.6/broom/man/brms_tidiers.Rd |only broom-0.5.6/broom/man/column_glossary.Rd |only broom-0.5.6/broom/man/emmeans_tidiers.Rd |only broom-0.5.6/broom/man/geeglm_tidiers.Rd |only broom-0.5.6/broom/man/insert_NAs.Rd |only broom-0.5.6/broom/man/lme4_tidiers.Rd |only broom-0.5.6/broom/man/matrix_tidiers.Rd |only broom-0.5.6/broom/man/mcmc_tidiers.Rd |only broom-0.5.6/broom/man/mgcv_glance_gam.Rd |only broom-0.5.6/broom/man/mgcv_tidy_gam.Rd |only broom-0.5.6/broom/man/nlme_tidiers.Rd |only broom-0.5.6/broom/man/ordinal_tidiers.Rd |only broom-0.5.6/broom/man/rowwise_df_tidiers.Rd |only broom-0.5.6/broom/man/rstanarm_tidiers.Rd |only broom-0.5.6/broom/tests/testthat/helper-tests.R |only broom-0.5.6/broom/tests/testthat/test-base.R |only broom-0.5.6/broom/tests/testthat/test-deprecating.R |only broom-0.5.6/broom/tests/testthat/test-speedglm.R |only broom-0.5.6/broom/tests/testthat/test-stats.R |only broom-0.7.0/broom/DESCRIPTION | 547 ++ broom-0.7.0/broom/LICENSE | 4 broom-0.7.0/broom/MD5 | 838 ++-- broom-0.7.0/broom/NAMESPACE | 561 +- broom-0.7.0/broom/NEWS.md | 996 +++-- broom-0.7.0/broom/R/aaa-documentation-helper.R |only broom-0.7.0/broom/R/aer-tidiers.R | 291 - broom-0.7.0/broom/R/auc-tidiers.R | 93 broom-0.7.0/broom/R/base-tidiers.R | 46 broom-0.7.0/broom/R/bbmle-tidiers.R | 88 broom-0.7.0/broom/R/betareg-tidiers.R | 219 - broom-0.7.0/broom/R/biglm-tidiers.R | 168 broom-0.7.0/broom/R/bingroup-tidiers.R | 224 - broom-0.7.0/broom/R/boot-tidiers.R | 239 - broom-0.7.0/broom/R/broom-package.R |only broom-0.7.0/broom/R/broom.R | 79 broom-0.7.0/broom/R/btergm-tidiers.R | 162 broom-0.7.0/broom/R/car-tidiers.R | 71 broom-0.7.0/broom/R/caret-tidiers.R | 255 - broom-0.7.0/broom/R/data-frame-tidiers.R |only broom-0.7.0/broom/R/deprecated-0-7-0.R |only broom-0.7.0/broom/R/drc-tidiers.R |only broom-0.7.0/broom/R/emmeans-tidiers.R | 362 + broom-0.7.0/broom/R/epiR-tidiers.R |only broom-0.7.0/broom/R/ergm-tidiers.R | 329 - broom-0.7.0/broom/R/fixest-tidiers.R |only broom-0.7.0/broom/R/gam-tidiers.R | 116 broom-0.7.0/broom/R/gamlss-tidiers.R | 97 broom-0.7.0/broom/R/gee.R |only broom-0.7.0/broom/R/geepack-tidiers.R | 246 - broom-0.7.0/broom/R/glmnet-cv-glmnet-tidiers.R | 208 - broom-0.7.0/broom/R/glmnet-glmnet-tidiers.R | 230 - broom-0.7.0/broom/R/gmm-tidiers.R | 266 - broom-0.7.0/broom/R/hmisc-tidiers.R | 128 broom-0.7.0/broom/R/joinerml-tidiers.R |only broom-0.7.0/broom/R/kendall-tidiers.R | 91 broom-0.7.0/broom/R/ks-tidiers.R | 128 broom-0.7.0/broom/R/lavaan-tidiers.R | 302 - broom-0.7.0/broom/R/leaps.R |only broom-0.7.0/broom/R/lfe-tidiers.R | 335 - broom-0.7.0/broom/R/list-irlba.R | 35 broom-0.7.0/broom/R/list-optim-tidiers.R | 121 broom-0.7.0/broom/R/list-svd-tidiers.R | 145 broom-0.7.0/broom/R/list-tidiers.R | 102 broom-0.7.0/broom/R/list-xyz-tidiers.R | 96 broom-0.7.0/broom/R/lm-beta-tidiers.R |only broom-0.7.0/broom/R/lmodel2-tidiers.R | 202 - broom-0.7.0/broom/R/lmtest-tidiers.R | 70 broom-0.7.0/broom/R/maps-tidiers.R | 81 broom-0.7.0/broom/R/mass-fitdistr-tidiers.R | 105 broom-0.7.0/broom/R/mass-polr-tidiers.R | 195 broom-0.7.0/broom/R/mass-ridgelm-tidiers.R | 185 broom-0.7.0/broom/R/mass-rlm-tidiers.R | 157 broom-0.7.0/broom/R/matrix-tidiers.R | 107 broom-0.7.0/broom/R/mclogit.R |only broom-0.7.0/broom/R/mclust-tidiers.R | 261 - broom-0.7.0/broom/R/mediate-tidiers.R |only broom-0.7.0/broom/R/mfx-tidiers.R |only broom-0.7.0/broom/R/mgcv-tidiers.R | 156 broom-0.7.0/broom/R/muhaz-tidiers.R | 104 broom-0.7.0/broom/R/multcomp-tidiers.R | 276 - broom-0.7.0/broom/R/nnet-tidiers.R | 239 - broom-0.7.0/broom/R/nobs.R |only broom-0.7.0/broom/R/null-and-default-tidiers.R | 86 broom-0.7.0/broom/R/orcutt-tidiers.R | 136 broom-0.7.0/broom/R/ordinal-clm-tidiers.R |only broom-0.7.0/broom/R/ordinal-clmm-tidiers.R |only broom-0.7.0/broom/R/pam-tidiers.R |only broom-0.7.0/broom/R/plm-tidiers.R | 191 broom-0.7.0/broom/R/polca-tidiers.R | 369 - broom-0.7.0/broom/R/psych-tidiers.R | 92 broom-0.7.0/broom/R/quantreg-nlrq-tidiers.R | 146 broom-0.7.0/broom/R/quantreg-rq-tidiers.R | 321 - broom-0.7.0/broom/R/quantreg-rqs-tidiers.R | 195 broom-0.7.0/broom/R/rma-tidiers.R |only broom-0.7.0/broom/R/robust-glmrob-tidiers.R |only broom-0.7.0/broom/R/robust-lmrob-tidiers.R |only broom-0.7.0/broom/R/robustbase-glmrob-tidiers.R |only broom-0.7.0/broom/R/robustbase-lmrob-tidiers.R |only broom-0.7.0/broom/R/scam-tidiers.R |only broom-0.7.0/broom/R/sp-tidiers.R | 220 - broom-0.7.0/broom/R/spdep-tidiers.R |only broom-0.7.0/broom/R/speedglm-speedglm-tidiers.R |only broom-0.7.0/broom/R/speedglm-speedlm-tidiers.R |only broom-0.7.0/broom/R/stats-anova-tidiers.R | 513 +- broom-0.7.0/broom/R/stats-arima-tidiers.R | 139 broom-0.7.0/broom/R/stats-decompose-tidiers.R | 232 - broom-0.7.0/broom/R/stats-factanal-tidiers.R | 319 - broom-0.7.0/broom/R/stats-glm-tidiers.R | 196 broom-0.7.0/broom/R/stats-htest-tidiers.R | 461 +- broom-0.7.0/broom/R/stats-kmeans-tidiers.R | 153 broom-0.7.0/broom/R/stats-lm-tidiers.R | 471 -- broom-0.7.0/broom/R/stats-loess-tidiers.R | 82 broom-0.7.0/broom/R/stats-mlm-tidiers.R |only broom-0.7.0/broom/R/stats-nls-tidiers.R | 227 - broom-0.7.0/broom/R/stats-prcomp-tidiers.R | 346 - broom-0.7.0/broom/R/stats-smooth.spline-tidiers.R | 112 broom-0.7.0/broom/R/stats-time-series-tidiers.R | 177 broom-0.7.0/broom/R/survey-tidiers.R | 163 broom-0.7.0/broom/R/survival-aareg-tidiers.R | 149 broom-0.7.0/broom/R/survival-cch-tidiers.R | 163 broom-0.7.0/broom/R/survival-coxph-tidiers.R | 352 - broom-0.7.0/broom/R/survival-pyears-tidiers.R | 155 broom-0.7.0/broom/R/survival-survdiff-tidiers.R | 168 broom-0.7.0/broom/R/survival-survexp-tidiers.R | 117 broom-0.7.0/broom/R/survival-survfit-tidiers.R | 262 - broom-0.7.0/broom/R/survival-survreg-tidiers.R | 230 - broom-0.7.0/broom/R/sysdata.rda |binary broom-0.7.0/broom/R/systemfit-tidiers.R |only broom-0.7.0/broom/R/tseries-tidiers.R | 156 broom-0.7.0/broom/R/utilities.R | 1041 ++--- broom-0.7.0/broom/R/zoo-tidiers.R | 95 broom-0.7.0/broom/R/zzz.R | 6 broom-0.7.0/broom/README.md | 254 - broom-0.7.0/broom/build/vignette.rds |binary broom-0.7.0/broom/inst/WORDLIST |only broom-0.7.0/broom/inst/doc/adding-tidiers.Rmd | 225 - broom-0.7.0/broom/inst/doc/adding-tidiers.html | 771 +-- broom-0.7.0/broom/inst/doc/available-methods.R | 46 broom-0.7.0/broom/inst/doc/available-methods.Rmd | 76 broom-0.7.0/broom/inst/doc/available-methods.html | 1981 +++++----- broom-0.7.0/broom/inst/doc/bootstrapping.R | 98 broom-0.7.0/broom/inst/doc/bootstrapping.Rmd | 162 broom-0.7.0/broom/inst/doc/bootstrapping.html | 731 +-- broom-0.7.0/broom/inst/doc/broom.R | 97 broom-0.7.0/broom/inst/doc/broom.Rmd | 353 - broom-0.7.0/broom/inst/doc/broom.html | 1184 +++-- broom-0.7.0/broom/inst/doc/broom_and_dplyr.R | 220 - broom-0.7.0/broom/inst/doc/broom_and_dplyr.Rmd | 355 - broom-0.7.0/broom/inst/doc/broom_and_dplyr.html | 1181 +++-- broom-0.7.0/broom/inst/doc/kmeans.Rmd | 157 broom-0.7.0/broom/inst/doc/kmeans.html | 744 +-- broom-0.7.0/broom/man/augment.Mclust.Rd | 54 broom-0.7.0/broom/man/augment.betamfx.Rd |only broom-0.7.0/broom/man/augment.betareg.Rd | 50 broom-0.7.0/broom/man/augment.clm.Rd |only broom-0.7.0/broom/man/augment.coxph.Rd | 72 broom-0.7.0/broom/man/augment.decomposed.ts.Rd | 59 broom-0.7.0/broom/man/augment.drc.Rd |only broom-0.7.0/broom/man/augment.factanal.Rd | 16 broom-0.7.0/broom/man/augment.felm.Rd | 60 broom-0.7.0/broom/man/augment.fixest.Rd |only broom-0.7.0/broom/man/augment.glm.Rd | 133 broom-0.7.0/broom/man/augment.glmRob.Rd |only broom-0.7.0/broom/man/augment.htest.Rd | 52 broom-0.7.0/broom/man/augment.ivreg.Rd | 36 broom-0.7.0/broom/man/augment.kmeans.Rd | 40 broom-0.7.0/broom/man/augment.lm.Rd | 131 broom-0.7.0/broom/man/augment.lmRob.Rd |only broom-0.7.0/broom/man/augment.loess.Rd | 62 broom-0.7.0/broom/man/augment.mfx.Rd |only broom-0.7.0/broom/man/augment.mjoint.Rd |only broom-0.7.0/broom/man/augment.nlrq.Rd | 48 broom-0.7.0/broom/man/augment.nls.Rd | 49 broom-0.7.0/broom/man/augment.pam.Rd |only broom-0.7.0/broom/man/augment.plm.Rd | 44 broom-0.7.0/broom/man/augment.poLCA.Rd | 102 broom-0.7.0/broom/man/augment.polr.Rd |only broom-0.7.0/broom/man/augment.prcomp.Rd | 14 broom-0.7.0/broom/man/augment.rlm.Rd | 114 broom-0.7.0/broom/man/augment.rma.Rd |only broom-0.7.0/broom/man/augment.robustbase.glmrob.Rd |only broom-0.7.0/broom/man/augment.robustbase.lmrob.Rd |only broom-0.7.0/broom/man/augment.rq.Rd | 43 broom-0.7.0/broom/man/augment.rqs.Rd | 49 broom-0.7.0/broom/man/augment.sarlm.Rd |only broom-0.7.0/broom/man/augment.smooth.spline.Rd | 24 broom-0.7.0/broom/man/augment.speedlm.Rd | 38 broom-0.7.0/broom/man/augment.stl.Rd | 14 broom-0.7.0/broom/man/augment.survreg.Rd | 60 broom-0.7.0/broom/man/augment_columns.Rd | 2 broom-0.7.0/broom/man/bootstrap.Rd | 28 broom-0.7.0/broom/man/broom.Rd | 151 broom-0.7.0/broom/man/confint_tidy.Rd | 25 broom-0.7.0/broom/man/data.frame_tidiers.Rd | 44 broom-0.7.0/broom/man/durbinWatsonTest_tidiers.Rd | 20 broom-0.7.0/broom/man/finish_glance.Rd | 31 broom-0.7.0/broom/man/fix_data_frame.Rd | 18 broom-0.7.0/broom/man/glance.Arima.Rd | 35 broom-0.7.0/broom/man/glance.Gam.Rd | 61 broom-0.7.0/broom/man/glance.Mclust.Rd | 62 broom-0.7.0/broom/man/glance.aareg.Rd | 38 broom-0.7.0/broom/man/glance.aov.Rd |only broom-0.7.0/broom/man/glance.betamfx.Rd |only broom-0.7.0/broom/man/glance.betareg.Rd | 33 broom-0.7.0/broom/man/glance.biglm.Rd | 51 broom-0.7.0/broom/man/glance.binDesign.Rd | 51 broom-0.7.0/broom/man/glance.cch.Rd | 60 broom-0.7.0/broom/man/glance.clm.Rd |only broom-0.7.0/broom/man/glance.clmm.Rd |only broom-0.7.0/broom/man/glance.coxph.Rd | 66 broom-0.7.0/broom/man/glance.cv.glmnet.Rd | 79 broom-0.7.0/broom/man/glance.drc.Rd |only broom-0.7.0/broom/man/glance.ergm.Rd | 17 broom-0.7.0/broom/man/glance.factanal.Rd | 72 broom-0.7.0/broom/man/glance.felm.Rd | 66 broom-0.7.0/broom/man/glance.fitdistr.Rd | 37 broom-0.7.0/broom/man/glance.fixest.Rd |only broom-0.7.0/broom/man/glance.garch.Rd | 27 broom-0.7.0/broom/man/glance.geeglm.Rd |only broom-0.7.0/broom/man/glance.glm.Rd | 40 broom-0.7.0/broom/man/glance.glmRob.Rd |only broom-0.7.0/broom/man/glance.glmnet.Rd | 54 broom-0.7.0/broom/man/glance.gmm.Rd | 92 broom-0.7.0/broom/man/glance.ivreg.Rd | 59 broom-0.7.0/broom/man/glance.kmeans.Rd | 45 broom-0.7.0/broom/man/glance.lavaan.Rd | 40 broom-0.7.0/broom/man/glance.lm.Rd | 106 broom-0.7.0/broom/man/glance.lmRob.Rd |only broom-0.7.0/broom/man/glance.lmodel2.Rd | 47 broom-0.7.0/broom/man/glance.mfx.Rd |only broom-0.7.0/broom/man/glance.mjoint.Rd |only broom-0.7.0/broom/man/glance.muhaz.Rd | 38 broom-0.7.0/broom/man/glance.multinom.Rd | 44 broom-0.7.0/broom/man/glance.nlrq.Rd | 29 broom-0.7.0/broom/man/glance.nls.Rd | 53 broom-0.7.0/broom/man/glance.orcutt.Rd | 49 broom-0.7.0/broom/man/glance.pam.Rd |only broom-0.7.0/broom/man/glance.plm.Rd | 51 broom-0.7.0/broom/man/glance.poLCA.Rd | 130 broom-0.7.0/broom/man/glance.polr.Rd |only broom-0.7.0/broom/man/glance.pyears.Rd | 44 broom-0.7.0/broom/man/glance.ridgelm.Rd | 50 broom-0.7.0/broom/man/glance.rlm.Rd | 34 broom-0.7.0/broom/man/glance.rma.Rd |only broom-0.7.0/broom/man/glance.robustbase.lmrob.Rd |only broom-0.7.0/broom/man/glance.rq.Rd | 29 broom-0.7.0/broom/man/glance.sarlm.Rd |only broom-0.7.0/broom/man/glance.smooth.spline.Rd | 34 broom-0.7.0/broom/man/glance.speedglm.Rd |only broom-0.7.0/broom/man/glance.speedlm.Rd | 53 broom-0.7.0/broom/man/glance.survdiff.Rd | 37 broom-0.7.0/broom/man/glance.survexp.Rd | 42 broom-0.7.0/broom/man/glance.survfit.Rd | 63 broom-0.7.0/broom/man/glance.survreg.Rd | 58 broom-0.7.0/broom/man/glance.svyglm.Rd |only broom-0.7.0/broom/man/glance.svyolr.Rd |only broom-0.7.0/broom/man/glance_optim.Rd | 29 broom-0.7.0/broom/man/list_tidiers.Rd | 2 broom-0.7.0/broom/man/metafor_tidiers.Rd |only broom-0.7.0/broom/man/null_tidiers.Rd | 2 broom-0.7.0/broom/man/reexports.Rd | 10 broom-0.7.0/broom/man/sp_tidiers.Rd | 2 broom-0.7.0/broom/man/sparse_tidiers.Rd | 21 broom-0.7.0/broom/man/summary_tidiers.Rd | 32 broom-0.7.0/broom/man/tidy.Arima.Rd | 24 broom-0.7.0/broom/man/tidy.Gam.Rd | 64 broom-0.7.0/broom/man/tidy.Kendall.Rd | 25 broom-0.7.0/broom/man/tidy.Mclust.Rd | 45 broom-0.7.0/broom/man/tidy.TukeyHSD.Rd | 25 broom-0.7.0/broom/man/tidy.aareg.Rd | 32 broom-0.7.0/broom/man/tidy.acf.Rd | 21 broom-0.7.0/broom/man/tidy.anova.Rd | 29 broom-0.7.0/broom/man/tidy.aov.Rd | 16 broom-0.7.0/broom/man/tidy.aovlist.Rd | 26 broom-0.7.0/broom/man/tidy.betamfx.Rd |only broom-0.7.0/broom/man/tidy.betareg.Rd | 46 broom-0.7.0/broom/man/tidy.biglm.Rd | 77 broom-0.7.0/broom/man/tidy.binDesign.Rd | 35 broom-0.7.0/broom/man/tidy.binWidth.Rd | 42 broom-0.7.0/broom/man/tidy.boot.Rd | 74 broom-0.7.0/broom/man/tidy.btergm.Rd | 39 broom-0.7.0/broom/man/tidy.cch.Rd | 46 broom-0.7.0/broom/man/tidy.cld.Rd | 38 broom-0.7.0/broom/man/tidy.clm.Rd |only broom-0.7.0/broom/man/tidy.clmm.Rd |only broom-0.7.0/broom/man/tidy.coeftest.Rd | 41 broom-0.7.0/broom/man/tidy.confint.glht.Rd | 40 broom-0.7.0/broom/man/tidy.confusionMatrix.Rd | 75 broom-0.7.0/broom/man/tidy.coxph.Rd | 32 broom-0.7.0/broom/man/tidy.cv.glmnet.Rd | 124 broom-0.7.0/broom/man/tidy.density.Rd | 26 broom-0.7.0/broom/man/tidy.dist.Rd | 36 broom-0.7.0/broom/man/tidy.drc.Rd |only broom-0.7.0/broom/man/tidy.emmGrid.Rd |only broom-0.7.0/broom/man/tidy.epi.2by2.Rd |only broom-0.7.0/broom/man/tidy.ergm.Rd | 7 broom-0.7.0/broom/man/tidy.factanal.Rd | 51 broom-0.7.0/broom/man/tidy.felm.Rd | 92 broom-0.7.0/broom/man/tidy.fitdistr.Rd | 18 broom-0.7.0/broom/man/tidy.fixest.Rd |only broom-0.7.0/broom/man/tidy.ftable.Rd | 31 broom-0.7.0/broom/man/tidy.gamlss.Rd | 30 broom-0.7.0/broom/man/tidy.garch.Rd | 23 broom-0.7.0/broom/man/tidy.geeglm.Rd |only broom-0.7.0/broom/man/tidy.glht.Rd | 61 broom-0.7.0/broom/man/tidy.glm.Rd | 61 broom-0.7.0/broom/man/tidy.glmRob.Rd |only broom-0.7.0/broom/man/tidy.glmnet.Rd | 76 broom-0.7.0/broom/man/tidy.gmm.Rd | 168 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broom-0.7.0/broom/tests/testthat/test-betareg.R | 103 broom-0.7.0/broom/tests/testthat/test-biglm.R | 72 broom-0.7.0/broom/tests/testthat/test-bingroup.R | 67 broom-0.7.0/broom/tests/testthat/test-boot.R | 104 broom-0.7.0/broom/tests/testthat/test-btergm.R | 91 broom-0.7.0/broom/tests/testthat/test-car.R | 93 broom-0.7.0/broom/tests/testthat/test-caret.R | 79 broom-0.7.0/broom/tests/testthat/test-cluster.R |only broom-0.7.0/broom/tests/testthat/test-drc.R |only broom-0.7.0/broom/tests/testthat/test-emmeans.R | 185 broom-0.7.0/broom/tests/testthat/test-epiR.R |only broom-0.7.0/broom/tests/testthat/test-ergm.R | 86 broom-0.7.0/broom/tests/testthat/test-fixest.R |only broom-0.7.0/broom/tests/testthat/test-gam.R | 58 broom-0.7.0/broom/tests/testthat/test-gamlss.R | 70 broom-0.7.0/broom/tests/testthat/test-gee.R |only broom-0.7.0/broom/tests/testthat/test-geepack.R | 73 broom-0.7.0/broom/tests/testthat/test-glmnet.R | 172 broom-0.7.0/broom/tests/testthat/test-glmnetUtils.R |only 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broom-0.7.0/broom/tests/testthat/test-mass-polr.R | 98 broom-0.7.0/broom/tests/testthat/test-mass-ridgelm.R | 58 broom-0.7.0/broom/tests/testthat/test-mass-rlm.R | 84 broom-0.7.0/broom/tests/testthat/test-mclogit.R |only broom-0.7.0/broom/tests/testthat/test-mclust.R | 143 broom-0.7.0/broom/tests/testthat/test-mediate.R |only broom-0.7.0/broom/tests/testthat/test-mfx.R |only broom-0.7.0/broom/tests/testthat/test-mgcv.R | 53 broom-0.7.0/broom/tests/testthat/test-muhaz.R | 58 broom-0.7.0/broom/tests/testthat/test-multcomp.R | 102 broom-0.7.0/broom/tests/testthat/test-nnet.R | 51 broom-0.7.0/broom/tests/testthat/test-null-and-default.R | 97 broom-0.7.0/broom/tests/testthat/test-orcutt.R | 69 broom-0.7.0/broom/tests/testthat/test-ordinal.R | 158 broom-0.7.0/broom/tests/testthat/test-pam.R |only broom-0.7.0/broom/tests/testthat/test-plm.R | 86 broom-0.7.0/broom/tests/testthat/test-polca.R | 81 broom-0.7.0/broom/tests/testthat/test-psych.R | 44 broom-0.7.0/broom/tests/testthat/test-quantreg-nlrq.R | 109 broom-0.7.0/broom/tests/testthat/test-quantreg-rq.R | 131 broom-0.7.0/broom/tests/testthat/test-quantreg-rqs.R | 114 broom-0.7.0/broom/tests/testthat/test-rma.R |only broom-0.7.0/broom/tests/testthat/test-robust.R |only broom-0.7.0/broom/tests/testthat/test-robustbase.R |only broom-0.7.0/broom/tests/testthat/test-sp.R | 196 broom-0.7.0/broom/tests/testthat/test-spdep.R |only broom-0.7.0/broom/tests/testthat/test-speedglm-speedglm.R |only broom-0.7.0/broom/tests/testthat/test-speedglm-speedlm.R |only broom-0.7.0/broom/tests/testthat/test-stats-anova.R | 161 broom-0.7.0/broom/tests/testthat/test-stats-arima.R | 71 broom-0.7.0/broom/tests/testthat/test-stats-decompose.R | 49 broom-0.7.0/broom/tests/testthat/test-stats-factanal.R | 186 broom-0.7.0/broom/tests/testthat/test-stats-glm.R | 128 broom-0.7.0/broom/tests/testthat/test-stats-htest.R | 233 - broom-0.7.0/broom/tests/testthat/test-stats-kmeans.R | 99 broom-0.7.0/broom/tests/testthat/test-stats-lm.R | 211 - broom-0.7.0/broom/tests/testthat/test-stats-loess.R | 31 broom-0.7.0/broom/tests/testthat/test-stats-mlm.R |only broom-0.7.0/broom/tests/testthat/test-stats-nls.R | 100 broom-0.7.0/broom/tests/testthat/test-stats-prcomp.R | 145 broom-0.7.0/broom/tests/testthat/test-stats-smooth.spline.R | 46 broom-0.7.0/broom/tests/testthat/test-stats-time-series.R | 71 broom-0.7.0/broom/tests/testthat/test-survey.R | 81 broom-0.7.0/broom/tests/testthat/test-survival-aareg.R | 90 broom-0.7.0/broom/tests/testthat/test-survival-cch.R | 73 broom-0.7.0/broom/tests/testthat/test-survival-coxph.R | 111 broom-0.7.0/broom/tests/testthat/test-survival-pyears.R | 83 broom-0.7.0/broom/tests/testthat/test-survival-survdiff.R | 120 broom-0.7.0/broom/tests/testthat/test-survival-survexp.R | 66 broom-0.7.0/broom/tests/testthat/test-survival-survfit.R | 95 broom-0.7.0/broom/tests/testthat/test-survival-survreg.R | 108 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Title: Gathering Metadata About Publications, Grants, Clinical Trials
from 'PubMed' Database
Description: A set of tools to extract bibliographic content from 'PubMed' database using 'NCBI' REST API <https://www.ncbi.nlm.nih.gov/home/develop/api/>.
Author: Massimo Aria [aut, cre] (<https://orcid.org/0000-0002-8517-9411>)
Maintainer: Massimo Aria <massimo.aria@gmail.com>
Diff between pubmedR versions 0.0.2 dated 2020-04-03 and 0.0.3 dated 2020-07-09
DESCRIPTION | 8 MD5 | 12 R/pmApi2df.R | 377 +++++++------- build/vignette.rds |binary inst/doc/A_Brief_Example.Rmd | 782 ++++++++++++++--------------- inst/doc/A_Brief_Example.html | 1096 +++++++++++++++++++++--------------------- vignettes/A_Brief_Example.Rmd | 782 ++++++++++++++--------------- 7 files changed, 1531 insertions(+), 1526 deletions(-)
Title: Graphics in the Context of Analyzing High-Throughput Data
Description: Additional options for making graphics in the context of analyzing high-throughput data are available here.
This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots,
automatic checking for optimal location of legends in plots, small histograms to insert as legends,
histograms re-transforming axis labels to linear when plotting log2-transformed data,
a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats,
principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples,
generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>,
staggered count plots and generation of mouse-over interactive html pages.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@unistra.fr>
Diff between wrGraph versions 1.0.1 dated 2020-06-02 and 1.0.2 dated 2020-07-09
wrGraph-1.0.1/wrGraph/inst/doc/wrGraphVignette1.R |only wrGraph-1.0.1/wrGraph/inst/doc/wrGraphVignette1.Rmd |only wrGraph-1.0.1/wrGraph/inst/doc/wrGraphVignette1.html |only wrGraph-1.0.1/wrGraph/vignettes/wrGraphVignette1.Rmd |only wrGraph-1.0.2/wrGraph/DESCRIPTION | 10 wrGraph-1.0.2/wrGraph/MD5 | 50 +-- wrGraph-1.0.2/wrGraph/NAMESPACE | 1 wrGraph-1.0.2/wrGraph/R/MAplotW.R | 266 +++++++++---------- wrGraph-1.0.2/wrGraph/R/checkForLegLoc.R | 106 +++++-- wrGraph-1.0.2/wrGraph/R/convertPlotCoordPix.R | 7 wrGraph-1.0.2/wrGraph/R/cumFrqPlot.R | 6 wrGraph-1.0.2/wrGraph/R/legendHist.R | 3 wrGraph-1.0.2/wrGraph/R/plotBy2Groups.R | 7 wrGraph-1.0.2/wrGraph/R/plotLinReg.R |only wrGraph-1.0.2/wrGraph/R/plotPCAw.R | 66 ++-- wrGraph-1.0.2/wrGraph/R/staggerdCountsPlot.R | 4 wrGraph-1.0.2/wrGraph/R/vioplotW.R | 240 +++++++++-------- wrGraph-1.0.2/wrGraph/build/vignette.rds |binary wrGraph-1.0.2/wrGraph/inst/doc/wrGraphVignette2.R |only wrGraph-1.0.2/wrGraph/inst/doc/wrGraphVignette2.Rmd |only wrGraph-1.0.2/wrGraph/inst/doc/wrGraphVignette2.html |only wrGraph-1.0.2/wrGraph/man/MAplotW.Rd | 23 - wrGraph-1.0.2/wrGraph/man/checkForLegLoc.Rd | 32 +- wrGraph-1.0.2/wrGraph/man/convertPlotCoordPix.Rd | 7 wrGraph-1.0.2/wrGraph/man/cumFrqPlot.Rd | 6 wrGraph-1.0.2/wrGraph/man/legendHist.Rd | 3 wrGraph-1.0.2/wrGraph/man/plotLinReg.Rd |only wrGraph-1.0.2/wrGraph/man/plotPCAw.Rd | 19 - wrGraph-1.0.2/wrGraph/man/staggerdCountsPlot.Rd | 4 wrGraph-1.0.2/wrGraph/man/vioplotW.Rd | 57 +--- wrGraph-1.0.2/wrGraph/vignettes/wrGraphVignette2.Rmd |only 31 files changed, 509 insertions(+), 408 deletions(-)
Title: Tools for Handling and Scraping Instant Weather Forecast Feeds
Description: Handle instant weather forecasts and geographical information. It combines multiple sources of information to obtain instant weather forecasts.
Author: Stan Yip [aut, cre]
Maintainer: Stan Yip <stanyip101@gmail.com>
Diff between weatherr versions 0.1.2 dated 2015-09-08 and 0.1.3 dated 2020-07-09
DESCRIPTION | 10 +++++----- INDEX |only MD5 | 11 ++++++----- R/ggele.R | 4 ++-- R/locationforecast.R | 8 ++++---- man/ggele.Rd | 4 +++- man/locationforecast.Rd | 5 ++++- 7 files changed, 24 insertions(+), 18 deletions(-)
Title: 'RStudio' Addins and 'Shiny' Modules for Medical Research
Description: 'RStudio' addins and 'Shiny' modules for descriptive statistics, regression and survival analysis.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jsmodule versions 1.0.8 dated 2020-06-04 and 1.1.0 dated 2020-07-09
jsmodule-1.0.8/jsmodule/man/logisticModule.Rd |only jsmodule-1.0.8/jsmodule/man/regressModule.Rd |only jsmodule-1.1.0/jsmodule/DESCRIPTION | 10 jsmodule-1.1.0/jsmodule/MD5 | 35 - jsmodule-1.1.0/jsmodule/NAMESPACE | 4 jsmodule-1.1.0/jsmodule/NEWS.md | 6 jsmodule-1.1.0/jsmodule/R/coxph.R | 61 + jsmodule-1.1.0/jsmodule/R/jsPropensityGadget.R | 2 jsmodule-1.1.0/jsmodule/R/regress.R | 598 +++---------------- jsmodule-1.1.0/jsmodule/R/roc.R | 16 jsmodule-1.1.0/jsmodule/R/timeroc.R | 4 jsmodule-1.1.0/jsmodule/build/vignette.rds |binary jsmodule-1.1.0/jsmodule/inst/doc/jsmodule.html | 20 jsmodule-1.1.0/jsmodule/man/ROC_table.Rd | 2 jsmodule-1.1.0/jsmodule/man/jsPropensityExtAddin.Rd | 2 jsmodule-1.1.0/jsmodule/man/rocModule.Rd | 62 - jsmodule-1.1.0/jsmodule/man/rocModule2.Rd |only jsmodule-1.1.0/jsmodule/man/survIDINRI_helper.Rd | 2 jsmodule-1.1.0/jsmodule/man/timeROC_table.Rd | 2 jsmodule-1.1.0/jsmodule/tests/testthat/test-module.R | 12 20 files changed, 244 insertions(+), 594 deletions(-)
Title: Generalized Linear Mixed Models with Robust Random Fields for
Spatiotemporal Modeling
Description: Implements Bayesian spatial and spatiotemporal
models that optionally allow for extreme spatial deviations through
time. 'glmmfields' uses a predictive process approach with random
fields implemented through a multivariate-t distribution instead of
the usual multivariate normal. Sampling is conducted with 'Stan'.
References: Anderson and Ward (2019) <doi:10.1002/ecy.2403>.
Author: Sean C. Anderson [aut, cre],
Eric J. Ward [aut],
Trustees of Columbia University [cph]
Maintainer: Sean C. Anderson <sean@seananderson.ca>
Diff between glmmfields versions 0.1.3 dated 2019-05-18 and 0.1.4 dated 2020-07-09
DESCRIPTION | 56 ++--- MD5 | 44 ++-- NEWS.md | 4 R/fitting.R | 4 R/glmmfields-package.R | 4 R/methods.R | 2 R/predict.R | 4 R/sim.R | 2 build/vignette.rds |binary inst/doc/spatial-glms.R | 26 +- inst/doc/spatial-glms.html | 284 +++++++++++++++------------ man/format_data.Rd | 17 + man/glmmfields.Rd | 44 ++-- man/loo.Rd | 2 man/plot.glmmfields.Rd | 8 man/predict.Rd | 15 + man/sim_glmmfields.Rd | 24 +- man/stan_pars.Rd | 10 tests/testthat/test-fit-ar-processes.R | 56 ++--- tests/testthat/test-fit-basic.R | 26 +- tests/testthat/test-fit-observation-models.R | 24 +- tests/testthat/test-fit-with-predictors.R | 8 tests/testthat/test-stations.R | 2 23 files changed, 387 insertions(+), 279 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multiprocess)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.17.0 dated 2020-04-18 and 1.18.0 dated 2020-07-09
DESCRIPTION | 8 MD5 | 135 ++++++------- NAMESPACE | 5 NEWS | 94 +++++++-- R/ClusterFuture-class.R | 77 +++++-- R/ConstantFuture-class.R | 10 R/Future-class.R | 10 R/FutureCondition-class.R | 8 R/FutureResult-class.R | 6 R/MulticoreFuture-class.R | 24 +- R/MultiprocessFuture-class.R | 5 R/MultisessionFuture-class.R | 12 - R/UniprocessFuture-class.R | 5 R/availableCores.R | 3 R/future.R | 33 +-- R/futureAssign.R | 3 R/globals.R | 33 ++- R/makeClusterMPI.R | 13 - R/makeClusterPSOCK.R | 109 ++++++++-- R/multiprocess.R | 10 R/multisession.R | 1 R/options.R | 26 +- R/signalConditions.R | 6 R/utils.R | 2 R/zzz.plan.R | 45 ++-- build/vignette.rds |binary demo/mandelbrot.R | 2 inst/WORDLIST | 126 +++++++++++- inst/doc/future-1-overview.html | 115 +++++------ inst/doc/future-1-overview.md.rsp | 115 +++++------ inst/doc/future-2-output.html | 12 - inst/doc/future-2-output.md.rsp | 12 - inst/doc/future-3-topologies.html | 38 +-- inst/doc/future-3-topologies.md.rsp | 38 +-- inst/doc/future-4-issues.html | 4 inst/doc/future-4-issues.md.rsp | 4 inst/doc/future-4-non-exportable-objects.html | 33 +++ inst/doc/future-4-non-exportable-objects.md.rsp | 31 ++ inst/doc/future-5-startup.html | 12 - inst/doc/future-5-startup.md.rsp | 12 - inst/doc/future-6-future-api-backend-specification.html |only inst/doc/future-6-future-api-backend-specification.md.rsp |only inst/vignettes-static/future-1-overview.md.rsp.rsp | 49 ++-- man/Future-class.Rd | 2 man/FutureResult.Rd | 6 man/MulticoreFuture-class.Rd | 4 man/autoStopCluster.Rd | 2 man/availableCores.Rd | 3 man/future.Rd | 5 man/future.options.Rd | 26 +- man/getExpression.Rd | 2 man/getGlobalsAndPackages.Rd | 7 man/makeClusterMPI.Rd | 7 man/makeClusterPSOCK.Rd | 30 ++ man/multiprocess.Rd | 11 - man/nbrOfWorkers.Rd | 2 man/nullcon.Rd | 2 man/signalConditions.Rd | 6 tests/cluster-missing-future-pkg.R | 18 - tests/cluster.R | 27 ++ tests/future.R | 14 - tests/incl/start,load-only.R | 2 tests/whichIndex.R | 2 vignettes/future-1-overview.md.rsp | 115 +++++------ vignettes/future-2-output.md.rsp | 12 - vignettes/future-3-topologies.md.rsp | 38 +-- vignettes/future-4-issues.md.rsp | 4 vignettes/future-4-non-exportable-objects.md.rsp | 31 ++ vignettes/future-5-startup.md.rsp | 12 - vignettes/future-6-future-api-backend-specification.md.rsp |only 70 files changed, 1105 insertions(+), 571 deletions(-)
Title: Change-in-Estimate Approach to Assess Confounding Effects
Description: Applies the change-in-effect estimate method to assess confounding
effects in medical and epidemiological research (Greenland & Pearce (2016)
<doi:10.1146/annurev-publhealth-031914-122559> ). It starts with a crude model
including only the outcome and exposure variables. At each of the subsequent
steps, one variable which creates the largest change among the remaining variables
is selected. This process is repeated until all variables have been entered into
the model (Wang Z (2007) <doi:10.1177/1536867X0700700203> ). Currently, the 'chest'
package has functions for linear regression, logistic regression, negative
binomial regression, Cox proportional hazards model and conditional logistic
regression.
Author: Zhiqiang Wang [aut, cre]
Maintainer: Zhiqiang Wang <zhiqiang.wang@menzies.edu.au>
Diff between chest versions 0.3.1 dated 2020-01-29 and 0.3.2 dated 2020-07-09
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 2 +- NEWS.md | 5 ++++- R/chest_cox.R | 2 +- build/vignette.rds |binary inst/doc/chest-vignette.html | 16 ++++++++++++++++ man/diab_df.Rd | 6 ++++-- 8 files changed, 38 insertions(+), 17 deletions(-)
Title: Effect Estimates from All Models
Description: Estimates and plots effect estimates from models with all possible
combinations of a list of variables. It can be used for assessing treatment
effects in clinical trials or risk factors in bio-medical and epidemiological
research. Like Stata command 'confall' (Wang Z (2007) <doi:10.1177/1536867X0700700203> ),
'allestimates' calculates and stores all effect estimates, and plots them against p values or
Akaike information criterion (AIC) values. It currently has functions for linear
regression: all_lm(), logistic and Poisson regression: all_glm() and all_speedglm(),
and Cox proportional hazards regression: all_cox().
Author: Zhiqiang Wang [aut, cre]
Maintainer: Zhiqiang Wang <zhiqiang.wang@menzies.edu.au>
Diff between allestimates versions 0.1.6 dated 2020-02-05 and 0.1.7 dated 2020-07-09
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 3 +++ R/all_cox.R | 2 +- build/vignette.rds |binary inst/doc/allestimates-vignette.html | 16 ++++++++++++++++ man/diab_df.Rd | 6 ++++-- 7 files changed, 36 insertions(+), 15 deletions(-)
Title: A 'shiny' Module for Reading Excel Sheets
Description: This is a shiny module that presents a file picker user interface to get an Excel file name, and reads the Excel sheets using 'readxl' package and returns the resulting sheet(s) as a vector and data in dataframe(s).
Author: Yadu Balehosur <yadu@vizualytics.com>
Maintainer: Yadu Balehosur <yadu@vizualytics.com>
Diff between modgetxl versions 0.3 dated 2020-06-28 and 0.4 dated 2020-07-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 5 ++--- R/xl.R | 18 +++++++----------- R/xlex.R | 3 ++- man/xlex.Rd | 3 ++- 6 files changed, 22 insertions(+), 25 deletions(-)
Title: Accelerated Bayesian Analytics with DAGs
Description: Accelerate Bayesian analytics workflows in 'R' through interactive modelling,
visualization, and inference. Define probabilistic graphical models using directed
acyclic graphs (DAGs) as a unifying language for business stakeholders, statisticians,
and programmers. This package relies on the sleek and elegant 'greta' package for
Bayesian inference. 'greta', in turn, is an interface into 'TensorFlow' from 'R'.
Install 'greta' using instructions available here: <http://causact.com/install-greta.html>.
See <http://github.com/flyaflya/causact> or <http://causact.com> for more documentation.
Author: Adam Fleischhacker [aut, cre, cph],
Daniela Dapena [ctb],
Rose Nguyen [ctb],
Jared Sharpe [ctb]
Maintainer: Adam Fleischhacker <ajf@udel.edu>
Diff between causact versions 0.3.1 dated 2020-06-24 and 0.3.2 dated 2020-07-09
DESCRIPTION | 17 +++++++++-------- MD5 | 18 +++++++++++++----- NEWS.md | 16 +++++++--------- R/dag_diagrammer.R | 5 ++--- R/dag_greta.R | 16 ++++++++++++++-- README.md | 49 ++++++++++++++++++++++++++++--------------------- man/figures |only 7 files changed, 73 insertions(+), 48 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-25 0.6.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-25 0.0.2.0
2020-01-17 0.0.1.1
2019-07-06 0.0.1.0
2019-02-08 0.0.0.9
Title: Create United States Uniform Cartogram Heatmaps
Description: The 'cartogram' heatmaps generated by the included methods
are an alternative to choropleth maps for the United States
and are based on work by the Washington Post graphics department in their report
on "The states most threatened by trade"
(<http://www.washingtonpost.com/wp-srv/special/business/states-most-threatened-by-trade/>).
"State bins" preserve as much of the geographic placement of the states as
possible but have the look and feel of a traditional heatmap. Functions are
provided that allow for use of a binned, discrete scale, a continuous scale
or manually specified colors depending on what is needed for the underlying data.
Author: Bob Rudis [aut, cre] (<https://orcid.org/0000-0001-5670-2640>),
Harold Gil [ctb] (fix for show.guide),
Brian Adams [ctb] (theme testing & feedback),
Thomas Wood [ctb] (Significant suggestions & testing that made new
features possible),
Mathew Kiang [ctb] (Minor fix for NA handling)
Maintainer: Bob Rudis <bob@rud.is>
Diff between statebins versions 1.2.2 dated 2015-12-21 and 1.4.0 dated 2020-07-08
statebins-1.2.2/statebins/man/statebins_continuous.Rd |only statebins-1.2.2/statebins/man/statebins_manual.Rd |only statebins-1.2.2/statebins/tests/test-all.R |only statebins-1.2.2/statebins/tests/testthat |only statebins-1.4.0/statebins/DESCRIPTION | 62 +- statebins-1.4.0/statebins/MD5 | 42 + statebins-1.4.0/statebins/NAMESPACE | 28 - statebins-1.4.0/statebins/R/aaa.R |only statebins-1.4.0/statebins/R/geom-rrect.r |only statebins-1.4.0/statebins/R/geom-rtile.R |only statebins-1.4.0/statebins/R/geom-statebins.r |only statebins-1.4.0/statebins/R/gutil.R |only statebins-1.4.0/statebins/R/statebins-package.R | 25 - statebins-1.4.0/statebins/R/statebins.R | 413 ++---------------- statebins-1.4.0/statebins/R/theme-statebin.R |only statebins-1.4.0/statebins/R/util.R |only statebins-1.4.0/statebins/data |only statebins-1.4.0/statebins/inst |only statebins-1.4.0/statebins/man/figures |only statebins-1.4.0/statebins/man/geom_statebins.Rd |only statebins-1.4.0/statebins/man/state_tbl.Rd |only statebins-1.4.0/statebins/man/statebins-package.Rd | 15 statebins-1.4.0/statebins/man/statebins.Rd | 87 +-- statebins-1.4.0/statebins/man/theme_statebins.Rd |only statebins-1.4.0/statebins/tests/tinytest.R |only 25 files changed, 215 insertions(+), 457 deletions(-)
Title: Model Elemental Fluxes in Fishes
Description: Model fluxes of carbon, nitrogen, and phosphorus with the use of a coupled
bioenergetics and stoichiometric model that incorporates flexible elemental limitation.
Additional functions to help the user to find parameters are included. Finally, functions to
extract and visualize results are available as well. For an introduction, see vignette.
For more information on the theoretical background of this model,
see Schiettekatte et al. (2020) <doi:10.1111/1365-2435.13618>.
Author: Nina M. D. Schiettekatte [aut, cre],
Diego Barneche [aut]
Maintainer: Nina M. D. Schiettekatte <nina.schiettekatte@gmail.com>
Diff between fishflux versions 0.0.1 dated 2020-07-03 and 0.0.1.1 dated 2020-07-08
DESCRIPTION | 6 - MD5 | 8 - README.md | 39 +++++-- inst/doc/intro_to_fishflux.html | 196 ++++++++++++++++++++-------------------- inst/stan/getB0.stan | 2 5 files changed, 132 insertions(+), 119 deletions(-)
Title: Ecological Metadata as Linked Data
Description: This is a utility for transforming Ecological Metadata Language
('EML') files into 'JSON-LD' and back into 'EML.' Doing so creates a
list-based representation of 'EML' in R, so that 'EML' data can easily
be manipulated using standard 'R' tools. This makes this package an
effective backend for other 'R'-based tools working with 'EML.' By
abstracting away the complexity of 'XML' Schema, developers can
build around native 'R' list objects and not have to worry about satisfying
many of the additional constraints of set by the schema (such as element
ordering, which is handled automatically). Additionally, the 'JSON-LD'
representation enables the use of developer-friendly 'JSON' parsing and
serialization that may facilitate the use of 'EML' in contexts outside of 'R,'
as well as the informatics-friendly serializations such as 'RDF' and
'SPARQL' queries.
Author: Carl Boettiger [aut, cre, cph]
(<https://orcid.org/0000-0002-1642-628X>),
Matthew B. Jones [aut, cph] (<https://orcid.org/0000-0003-0077-4738>),
Bryce Mecum [aut, cph] (<https://orcid.org/0000-0002-0381-3766>)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between emld versions 0.4.0 dated 2020-02-05 and 0.5.0 dated 2020-07-08
DESCRIPTION | 6 MD5 | 22 NEWS.md | 8 R/eml_version.R | 25 R/validate_units.R | 6 build/vignette.rds |binary inst/doc/tutorial.html | 181 + inst/tests/eml-2.1.1/invalid |only inst/tests/eml-2.2.0/eml-2.2.0-milligramPerLiter.xml |only inst/tests/eml-2.2.0/eml-unitDictionary.xml | 1741 +++++++++++++++---- man/eml_version.Rd | 4 tests/testthat/test-validator.R | 9 tests/testthat/test-version.R | 12 13 files changed, 1574 insertions(+), 440 deletions(-)
Title: Hidden Markov Models of Character Evolution
Description: Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
Author: Jeremy Beaulieu [aut, cre],
Brian O'Meara [aut],
Jeffrey Oliver [aut],
James Boyko [aut]
Maintainer: Jeremy Beaulieu <jmbeauli@uark.edu>
Diff between corHMM versions 2.1 dated 2020-07-07 and 2.2 dated 2020-07-08
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/doc/corHMMv2.1-vignette.pdf |binary 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Extra 'Recipes' for Text Processing
Description: Converting text to numerical features requires
specifically created procedures, which are implemented as steps
according to the 'recipes' package. These steps allows for
tokenization, filtering, counting (tf and tfidf) and feature hashing.
Author: Emil Hvitfeldt [aut, cre] (<https://orcid.org/0000-0002-0679-1945>)
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between textrecipes versions 0.2.3 dated 2020-05-22 and 0.3.0 dated 2020-07-08
DESCRIPTION | 18 MD5 | 84 - NAMESPACE | 6 NEWS.md | 6 R/0_imports.R | 2 R/RcppExports.R | 5 R/ngram.R | 22 R/stopwords.R | 9 R/text_normalization.R |only R/tokenlist.R | 4 R/utils-pipe.R | 2 README.md | 60 - inst/doc/Working-with-n-grams.html | 480 +++++----- inst/doc/cookbook---using-more-complex-recipes-involving-text.R | 6 inst/doc/cookbook---using-more-complex-recipes-involving-text.Rmd | 6 inst/doc/cookbook---using-more-complex-recipes-involving-text.html | 436 ++++----- inst/doc/tokenlist.html | 26 man/figures/logo.png |only man/pipe.Rd | 2 man/rcpp_ngram.Rd | 4 man/step_lda.Rd | 6 man/step_lemma.Rd | 6 man/step_ngram.Rd | 19 man/step_pos_filter.Rd | 6 man/step_sequence_onehot.Rd | 6 man/step_stem.Rd | 6 man/step_stopwords.Rd | 9 man/step_text_normalization.Rd |only man/step_textfeature.Rd | 6 man/step_texthash.Rd | 6 man/step_tf.Rd | 6 man/step_tfidf.Rd | 6 man/step_tokenfilter.Rd | 6 man/step_tokenize.Rd | 6 man/step_tokenmerge.Rd | 6 man/step_untokenize.Rd | 6 man/step_word_embeddings.Rd | 6 man/textrecipes-package.Rd | 2 src/RcppExports.cpp | 9 src/ngram.cpp | 52 - tests/testthat/test-ngram.R | 104 +- tests/testthat/test-stopwords.R | 4 tests/testthat/test-text_normalization.R |only tests/testthat/test-tokenlist.R | 85 + vignettes/cookbook---using-more-complex-recipes-involving-text.Rmd | 6 45 files changed, 927 insertions(+), 625 deletions(-)
Title: Statistical Toolbox for Radiometric Geochronology
Description: Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using 'York', 'Titterington' and 'Ludwig' approaches. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb, Th-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isochrons as well as 230Th-U evolution plots.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotR versions 3.3 dated 2020-03-19 and 3.4 dated 2020-07-08
IsoplotR-3.3/IsoplotR/R/tests.R |only IsoplotR-3.4/IsoplotR/DESCRIPTION | 10 IsoplotR-3.4/IsoplotR/MD5 | 106 ++--- IsoplotR-3.4/IsoplotR/NAMESPACE | 1 IsoplotR-3.4/IsoplotR/R/ArAr.R | 4 IsoplotR-3.4/IsoplotR/R/KCa.R | 4 IsoplotR-3.4/IsoplotR/R/PD.R | 6 IsoplotR-3.4/IsoplotR/R/PbPb.R | 4 IsoplotR-3.4/IsoplotR/R/ThPb.R | 4 IsoplotR-3.4/IsoplotR/R/ThU.R | 18 IsoplotR-3.4/IsoplotR/R/UPb.R | 636 +++++++++++++++--------------- IsoplotR-3.4/IsoplotR/R/age.R | 66 +-- IsoplotR-3.4/IsoplotR/R/agespectrum.R | 12 IsoplotR-3.4/IsoplotR/R/cad.R | 124 ++--- IsoplotR-3.4/IsoplotR/R/central.R | 21 IsoplotR-3.4/IsoplotR/R/commonPb.R | 111 ++--- IsoplotR-3.4/IsoplotR/R/concordia.R | 73 ++- IsoplotR-3.4/IsoplotR/R/discfilter.R |only IsoplotR-3.4/IsoplotR/R/discordia.R | 4 IsoplotR-3.4/IsoplotR/R/errorellipse.R | 80 ++- IsoplotR-3.4/IsoplotR/R/evolution.R | 113 +++-- IsoplotR-3.4/IsoplotR/R/helioplot.R | 67 +-- IsoplotR-3.4/IsoplotR/R/io.R | 22 - IsoplotR-3.4/IsoplotR/R/isochron.R | 345 ++++++++-------- IsoplotR-3.4/IsoplotR/R/kde.R | 162 +++---- IsoplotR-3.4/IsoplotR/R/ludwig.R | 31 - IsoplotR-3.4/IsoplotR/R/peakfit.R | 160 ++++--- IsoplotR-3.4/IsoplotR/R/radialplot.R | 44 -- IsoplotR-3.4/IsoplotR/R/regression.R | 12 IsoplotR-3.4/IsoplotR/R/toolbox.R | 77 ++- IsoplotR-3.4/IsoplotR/R/weightedmean.R | 212 +++++----- IsoplotR-3.4/IsoplotR/R/york.R | 18 IsoplotR-3.4/IsoplotR/README.md | 4 IsoplotR-3.4/IsoplotR/inst/PbPb3.csv | 36 - IsoplotR-3.4/IsoplotR/inst/UPb7.csv | 42 - IsoplotR-3.4/IsoplotR/inst/UPb8.csv |only IsoplotR-3.4/IsoplotR/man/Pb0corr.Rd | 7 IsoplotR-3.4/IsoplotR/man/age.Rd | 112 +++-- IsoplotR-3.4/IsoplotR/man/agespectrum.Rd | 52 +- IsoplotR-3.4/IsoplotR/man/cad.Rd | 231 +++++++--- IsoplotR-3.4/IsoplotR/man/central.Rd | 3 IsoplotR-3.4/IsoplotR/man/concordia.Rd | 50 +- IsoplotR-3.4/IsoplotR/man/data2york.Rd | 14 IsoplotR-3.4/IsoplotR/man/discfilter.Rd |only IsoplotR-3.4/IsoplotR/man/diseq.Rd | 9 IsoplotR-3.4/IsoplotR/man/evolution.Rd | 41 + IsoplotR-3.4/IsoplotR/man/helioplot.Rd | 44 +- IsoplotR-3.4/IsoplotR/man/isochron.Rd | 403 ++++++++++++++----- IsoplotR-3.4/IsoplotR/man/kde.Rd | 414 ++++++++++++++----- IsoplotR-3.4/IsoplotR/man/ludwig.Rd | 10 IsoplotR-3.4/IsoplotR/man/mds.Rd | 33 + IsoplotR-3.4/IsoplotR/man/peakfit.Rd | 167 +++++-- IsoplotR-3.4/IsoplotR/man/radialplot.Rd | 418 ++++++++++++++----- IsoplotR-3.4/IsoplotR/man/read.data.Rd | 50 +- IsoplotR-3.4/IsoplotR/man/scatterplot.Rd | 65 ++- IsoplotR-3.4/IsoplotR/man/weightedmean.Rd | 423 ++++++++++++++----- 56 files changed, 3268 insertions(+), 1907 deletions(-)
Title: Utilities for Quantiles
Description: Functions for unconditional and conditional quantiles. These
include methods for transformation-based quantile regression,
quantile-based measures of location, scale and shape, methods for quantiles
of discrete variables, quantile-based multiple imputation, restricted
quantile regression, and directional quantile classification. A vignette
is given in Geraci (2016, The R Journal) <doi:10.32614/RJ-2016-037> and
included in the package.
Author: Marco Geraci [aut, cph, cre] (<https://orcid.org/0000-0002-6311-8685>),
Alessio Farcomeni [ctb] (Contributions to midrq code,
<https://orcid.org/0000-0002-7104-5826>)
Maintainer: Marco Geraci <geraci@mailbox.sc.edu>
Diff between Qtools versions 1.5.1 dated 2019-12-13 and 1.5.2 dated 2020-07-08
DESCRIPTION | 26 ++++---- MD5 | 28 ++++---- NAMESPACE | 12 ++- NEWS | 23 ++++--- R/Qtools.R | 158 +++++++++++++++++++++++++++++++++++++------------ build/vignette.rds |binary inst/doc/Qtools.R | 2 inst/doc/Qtools.html | 8 -- man/Qtools-internal.Rd | 1 man/Qtools-package.Rd | 6 - man/cmidecdf.Rd | 12 ++- man/midq2q.Rd |only man/midrq.Rd | 2 man/midrqControl.Rd | 7 +- man/plot.midq2q.Rd |only man/predict.qlss.Rd | 16 ++-- 16 files changed, 202 insertions(+), 99 deletions(-)
Title: Mixed Effect Excess Hazard Models
Description: Fit flexible (excess) hazard regression models with the possibility of including non-proportional effects of covariables and of adding a random effect at the cluster level (corresponding to a shared frailty).
Author: Hadrien Charvat, Aurelien Belot
Maintainer: Hadrien Charvat <chadrien@ncc.go.jp>
Diff between mexhaz versions 1.7 dated 2019-12-10 and 1.8 dated 2020-07-08
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 12 +++++++++++- R/mexhaz.R | 7 ++----- R/predict.mexhaz.R | 16 +++++++++------- man/mexhaz.Rd | 3 +-- src/FrailtyAdaptL.c | 6 +++--- src/init.c | 36 ++++++++++++++++++------------------ 8 files changed, 55 insertions(+), 47 deletions(-)
Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query
engine to efficiently analyze large corpora (<http://cwb.sourceforge.net>). 'RcppCWB' is licensed
under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>).
The 'CWB' relies on 'pcre' (BSD license, see <http://www.pcre.org/licence.txt>)
and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>).
See the file LICENSE.note for further information. The package includes modified code of the
'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors
of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this
package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code
is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre],
Bernard Desgraupes [aut],
Sylvain Loiseau [aut],
Oliver Christ [ctb],
Bruno Maximilian Schulze [ctb],
Stefan Evert [ctb],
Arne Fitschen [ctb],
Jeroen Ooms [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between RcppCWB versions 0.2.9 dated 2020-06-25 and 0.3.0 dated 2020-07-08
DESCRIPTION | 24 ++-- MD5 | 60 ++++++----- NEWS.md | 19 +++ R/zzz.R | 8 + README.md | 4 configure | 197 +++++++++++++++++++++++++++++---------- src/cqp.cpp | 19 +-- src/cwb/Makefile | 2 src/cwb/cl/attributes.c | 6 - src/cwb/cl/cdaccess.c | 2 src/cwb/cl/class-mapping.c | 14 +- src/cwb/cl/class-mapping.h | 4 src/cwb/cl/makecomps.c | 2 src/cwb/cl/storage.c | 3 src/cwb/config/platform/linux-64 | 2 src/cwb/cqp/Makefile | 16 +-- src/cwb/cqp/_options.h | 164 ++++++++++++++++---------------- src/cwb/cqp/corpmanag.c | 2 src/cwb/cqp/corpmanag.h | 4 src/cwb/cqp/cqp.h | 24 ++-- src/cwb/cqp/eval.c | 8 - src/cwb/cqp/eval.h | 15 +- src/cwb/cqp/lex.yy.c | 92 ------------------ src/cwb/cqp/options.h | 162 ++++++++++++++++---------------- src/cwb/cqp/parse_actions.c | 18 +-- src/cwb/cqp/parser.tab.c | 2 src/cwb/cqp/parser.y | 5 src/cwb/cqp/regex2dfa.c | 2 src/cwb/definitions.mk | 6 - src/env.h |only src/globalvars.h |only src/utils.h | 2 32 files changed, 467 insertions(+), 421 deletions(-)
Title: Tidy Tuning Tools
Description: The ability to tune models is important. 'tune' contains functions and
classes to be used in conjunction with other 'tidymodels' packages for
finding reasonable values of hyper-parameters in models, pre-processing
methods, and post-processing steps.
Author: Max Kuhn [aut, cre],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between tune versions 0.1.0 dated 2020-04-02 and 0.1.1 dated 2020-07-08
tune-0.1.0/tune/R/compat_dplyr.R |only tune-0.1.0/tune/R/tune_Bayes.R |only tune-0.1.0/tune/inst/examples |only tune-0.1.0/tune/tests/testthat/bayes_example.RData |only tune-0.1.0/tune/tests/testthat/svm_results.RData |only tune-0.1.1/tune/DESCRIPTION | 14 tune-0.1.1/tune/MD5 | 179 ++---- tune-0.1.1/tune/NAMESPACE | 81 ++ tune-0.1.1/tune/NEWS.md | 33 + tune-0.1.1/tune/R/0_imports.R | 20 tune-0.1.1/tune/R/checks.R | 138 +++- tune-0.1.1/tune/R/collect.R | 30 - tune-0.1.1/tune/R/compat-dplyr-old.R |only tune-0.1.1/tune/R/compat-dplyr.R |only tune-0.1.1/tune/R/compat-vctrs-helpers.R |only tune-0.1.1/tune/R/compat-vctrs.R |only tune-0.1.1/tune/R/conf_mat_resampled.R |only tune-0.1.1/tune/R/control.R | 56 + tune-0.1.1/tune/R/coord_obs_pred.R |only tune-0.1.1/tune/R/data.R | 2 tune-0.1.1/tune/R/extract.R | 19 tune-0.1.1/tune/R/filter_parameters.R |only tune-0.1.1/tune/R/grid_code_paths.R | 92 ++- tune-0.1.1/tune/R/grid_performance.R | 4 tune-0.1.1/tune/R/iteration_results.R |only tune-0.1.1/tune/R/last_fit.R | 10 tune-0.1.1/tune/R/merge.R | 3 tune-0.1.1/tune/R/min_grid.R | 5 tune-0.1.1/tune/R/outcome-names.R | 12 tune-0.1.1/tune/R/plots.R | 386 ++++++++++++- tune-0.1.1/tune/R/resample.R | 16 tune-0.1.1/tune/R/resample_results.R |only tune-0.1.1/tune/R/select_best.R | 29 tune-0.1.1/tune/R/symbol.R | 8 tune-0.1.1/tune/R/tunable.R | 116 +++ tune-0.1.1/tune/R/tune_args.R | 3 tune-0.1.1/tune/R/tune_bayes.R |only tune-0.1.1/tune/R/tune_grid.R | 94 ++- tune-0.1.1/tune/R/tune_results.R |only tune-0.1.1/tune/R/utils.R | 124 ++++ tune-0.1.1/tune/R/zzz.R | 31 - tune-0.1.1/tune/README.md | 77 +- tune-0.1.1/tune/data/example_ames_knn.RData |binary tune-0.1.1/tune/inst/WORDLIST | 2 tune-0.1.1/tune/man/autoplot.tune_results.Rd | 50 + tune-0.1.1/tune/man/conf_mat_resampled.Rd |only tune-0.1.1/tune/man/control_bayes.Rd | 6 tune-0.1.1/tune/man/control_grid.Rd | 9 tune-0.1.1/tune/man/coord_obs_pred.Rd |only tune-0.1.1/tune/man/empty_ellipses.Rd |only tune-0.1.1/tune/man/example_ames_knn.Rd | 2 tune-0.1.1/tune/man/filter_parameters.Rd |only tune-0.1.1/tune/man/fit_resamples.Rd | 2 tune-0.1.1/tune/man/merge.recipe.Rd | 3 tune-0.1.1/tune/man/outcome_names.Rd | 3 tune-0.1.1/tune/man/show_best.Rd | 12 tune-0.1.1/tune/man/tunable.Rd | 10 tune-0.1.1/tune/man/tune_accessor.Rd |only tune-0.1.1/tune/man/tune_args.Rd | 3 tune-0.1.1/tune/man/tune_bayes.Rd | 4 tune-0.1.1/tune/man/tune_grid.Rd | 4 tune-0.1.1/tune/tests/testthat/Rplots.pdf |only tune-0.1.1/tune/tests/testthat/helper-s3.R |only tune-0.1.1/tune/tests/testthat/knn_gp.rds |only tune-0.1.1/tune/tests/testthat/knn_grid.rds |binary tune-0.1.1/tune/tests/testthat/knn_results.rds |binary tune-0.1.1/tune/tests/testthat/knn_set.rds |binary tune-0.1.1/tune/tests/testthat/lm_bayes.rds |only tune-0.1.1/tune/tests/testthat/lm_resamples.rds |only tune-0.1.1/tune/tests/testthat/rcv_results.rds |binary tune-0.1.1/tune/tests/testthat/svm_reg_results.rds |only tune-0.1.1/tune/tests/testthat/svm_results.rds |only tune-0.1.1/tune/tests/testthat/test-GP.R | 69 -- tune-0.1.1/tune/tests/testthat/test-autoplot.R | 177 +++++ tune-0.1.1/tune/tests/testthat/test-bayes.R | 39 + tune-0.1.1/tune/tests/testthat/test-checks.R | 50 - tune-0.1.1/tune/tests/testthat/test-collect.R | 44 - tune-0.1.1/tune/tests/testthat/test-compat-dplyr-old.R |only tune-0.1.1/tune/tests/testthat/test-compat-dplyr.R |only tune-0.1.1/tune/tests/testthat/test-compat-vctrs-helpers.R |only tune-0.1.1/tune/tests/testthat/test-compat-vctrs.R |only tune-0.1.1/tune/tests/testthat/test-conf-mat-resampled.R |only tune-0.1.1/tune/tests/testthat/test-engine-parameters.R |only tune-0.1.1/tune/tests/testthat/test-estimate.R | 15 tune-0.1.1/tune/tests/testthat/test-extract.R | 49 + tune-0.1.1/tune/tests/testthat/test-filter-parameters.R |only tune-0.1.1/tune/tests/testthat/test-finalization.R |only tune-0.1.1/tune/tests/testthat/test-grid.R | 82 ++ tune-0.1.1/tune/tests/testthat/test-misc.R | 38 + tune-0.1.1/tune/tests/testthat/test-outcome-names.R |only tune-0.1.1/tune/tests/testthat/test-predictions.R | 56 - tune-0.1.1/tune/tests/testthat/test-resample.R | 49 + tune-0.1.1/tune/tests/testthat/test-select_best.R | 38 - tune-0.1.1/tune/tests/testthat/test-tunable.R | 7 tune-0.1.1/tune/tests/testthat/test_objects.RData |binary 95 files changed, 1876 insertions(+), 529 deletions(-)
Title: Tools for Creating Tuning Parameter Values
Description: Many models contain tuning parameters (i.e. parameters that cannot be directly estimated from the data). These tools can be used to define objects for creating, simulating, or validating values for such parameters.
Author: Max Kuhn [aut, cre],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between dials versions 0.0.7 dated 2020-06-10 and 0.0.8 dated 2020-07-08
dials-0.0.7/dials/tests/testthat/test_qual_params.R |only dials-0.0.8/dials/DESCRIPTION | 8 ++-- dials-0.0.8/dials/MD5 | 34 ++++++++++++-------- dials-0.0.8/dials/NAMESPACE | 21 ++++++++++++ dials-0.0.8/dials/NEWS.md | 4 ++ dials-0.0.8/dials/R/aaa_unknown.R | 8 +++- dials-0.0.8/dials/R/finalize.R | 22 ++++++++++++ dials-0.0.8/dials/R/param_engine_c50.R |only dials-0.0.8/dials/R/param_engine_cubist.R |only dials-0.0.8/dials/R/param_engine_earth.R |only dials-0.0.8/dials/R/param_engine_randomForest.R |only dials-0.0.8/dials/R/param_engine_ranger.R |only dials-0.0.8/dials/R/parameters.R | 2 - dials-0.0.8/dials/inst/doc/Basics.html | 16 +++++++++ dials-0.0.8/dials/man/c5_parameters.Rd |only dials-0.0.8/dials/man/cubist_parameters.Rd |only dials-0.0.8/dials/man/earth_parameters.Rd |only dials-0.0.8/dials/man/finalize.Rd | 6 +++ dials-0.0.8/dials/man/new-param.Rd | 2 - dials-0.0.8/dials/man/randomForest_parameters.Rd |only dials-0.0.8/dials/man/ranger_parameters.Rd |only dials-0.0.8/dials/man/update.parameters.Rd | 2 - dials-0.0.8/dials/tests/testthat/test_finalize.R | 8 ++-- dials-0.0.8/dials/tests/testthat/test_params.R |only 24 files changed, 108 insertions(+), 25 deletions(-)
Title: Hierarchical Bayesian Analysis of North American BBS Data
Description: The North American Breeding Bird Survey (BBS) is a long-running
program that seeks to monitor the status and trends of the breeding birds in
North America. Since its start in 1966, the BBS has accumulated over 50 years
of data for over 500 species of North American Birds. Given the temporal and
spatial structure of the data, hierarchical Bayesian models are used to assess
the status and trends of these 500+ species of birds. 'bbsBayes' allows you to perform
hierarchical Bayesian analysis of BBS data. You can run a full
model analysis for one or more species that you choose, or you can take
more control and specify how the data should be stratified, prepared
for 'JAGS', or modelled. The functions provided here allow you to replicate
analyses performed by the United State Geological Survey (USGS, see Link
and Sauer (2011) <doi:10.1525/auk.2010.09220>) and Canadian Wildlife Service
(CWS, see Smith and Edwards (2020) <doi:10.1101/2020.03.26.010215>).
Author: Brandon P.M. Edwards [aut, cre],
Adam C. Smith [aut]
Maintainer: Brandon P.M. Edwards <edwardsb@uoguelph.ca>
Diff between bbsBayes versions 2.3.2.2020 dated 2020-06-27 and 2.3.3.2020 dated 2020-07-08
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/fetch-bbs-data.R | 18 ++++++++++++------ man/fetch_bbs_data.Rd | 3 ++- 4 files changed, 21 insertions(+), 14 deletions(-)
Title: Fast Rolling Functions for Seismology using 'Rcpp'
Description: Fast versions of seismic analysis functions that 'roll' over a
vector of values. See the 'RcppRoll' package for alternative
versions of basic statistical functions such as rolling mean,
median, etc.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Mary Templeton [aut],
Gillian Sharer [aut, cre]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between seismicRoll versions 1.1.3 dated 2018-12-04 and 1.1.4 dated 2020-07-08
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- man/findOutliers.Rd | 10 ++++++++-- man/seismicRoll.Rd | 6 +++++- src/source_files.cpp | 19 +++++++++++++++++++ 5 files changed, 40 insertions(+), 11 deletions(-)
Title: Confidentiality of Spatial Point Data
Description: Provides an automatic aggregation tool to manage point data privacy,
intended to be helpful for the production of official spatial data and for researchers.
The package pursues the data accuracy at the smallest possible areas preventing
individual information disclosure. The methodology, based on hierarchical geographic
data structures performs aggregation and local suppression of point data to ensure privacy
as described in Lagonigro, R., Oller, R., Martori J.C. (2017) <doi:10.2436/20.8080.02.55>.
The data structures are created following the guidelines for grid datasets from the
European Forum for Geography and Statistics.
Author: Raymond Lagonigro [aut, cre] (<https://orcid.org/0000-0002-8091-4296>),
Ramon Oller [aut] (<https://orcid.org/0000-0002-4333-0021>),
Joan Carles Martori [aut] (<https://orcid.org/0000-0002-8400-5487>)
Maintainer: Raymond Lagonigro <raymond.lagonigro@uvic.cat>
Diff between AQuadtree versions 1.0.0 dated 2020-03-13 and 1.0.1 dated 2020-07-08
AQuadtree-1.0.0/AQuadtree/inst/doc/AQuadtreeUse.pdf |only AQuadtree-1.0.0/AQuadtree/vignettes/AQuadtreeUse.html |only AQuadtree-1.0.1/AQuadtree/DESCRIPTION | 7 +-- AQuadtree-1.0.1/AQuadtree/MD5 | 36 ++++++++-------- AQuadtree-1.0.1/AQuadtree/NEWS |only AQuadtree-1.0.1/AQuadtree/R/AQuadtree-class.R | 17 +++++++ AQuadtree-1.0.1/AQuadtree/R/createAQuadtree.R | 19 ++++---- AQuadtree-1.0.1/AQuadtree/R/createGrid.R | 10 ++-- AQuadtree-1.0.1/AQuadtree/R/joinAQuadtrees.R | 6 ++ AQuadtree-1.0.1/AQuadtree/R/pointsToAQuadtree.R | 15 +++++- AQuadtree-1.0.1/AQuadtree/R/spatialPointsCellCodes.R | 13 +++++ AQuadtree-1.0.1/AQuadtree/build/vignette.rds |binary AQuadtree-1.0.1/AQuadtree/inst/doc/AQuadtreeUse.Rmd | 6 +- AQuadtree-1.0.1/AQuadtree/inst/doc/AQuadtreeUse.html |only AQuadtree-1.0.1/AQuadtree/man/AQuadtree-class.Rd | 16 ++++++- AQuadtree-1.0.1/AQuadtree/man/createAQuadtree.Rd | 6 +- AQuadtree-1.0.1/AQuadtree/man/createGrid.Rd | 8 +-- AQuadtree-1.0.1/AQuadtree/man/joinAQuadtrees.Rd | 6 ++ AQuadtree-1.0.1/AQuadtree/man/pointsToAQuadtree.Rd | 10 ++++ AQuadtree-1.0.1/AQuadtree/man/spatialPointsCellCodes.Rd | 8 +++ AQuadtree-1.0.1/AQuadtree/vignettes/AQuadtreeUse.Rmd | 6 +- 21 files changed, 136 insertions(+), 53 deletions(-)
Title: R Interface to Stan
Description: User-facing R functions are provided to parse, compile, test,
estimate, and analyze Stan models by accessing the header-only Stan library
provided by the 'StanHeaders' package. The Stan project develops a probabilistic
programming language that implements full Bayesian statistical inference
via Markov Chain Monte Carlo, rough Bayesian inference via 'variational'
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to quickly
and accurately evaluate gradients without burdening the user with the need to
derive the partial derivatives.
Author: Jiqiang Guo [aut],
Jonah Gabry [aut],
Ben Goodrich [cre, aut],
Sebastian Weber [aut],
Daniel Lee [ctb],
Krzysztof Sakrejda [ctb],
Modrak Martin [ctb],
Trustees of Columbia University [cph],
Oleg Sklyar [cph] (R/cxxfunplus.R),
The R Core Team [cph] (R/pairs.R, R/dynGet.R),
Jens Oehlschlaegel-Akiyoshi [cph] (R/pairs.R),
John Maddock [cph] (gamma.hpp),
Paul Bristow [cph] (gamma.hpp),
Nikhar Agrawal [cph] (gamma.hpp),
Christopher Kormanyos [cph] (gamma.hpp)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstan versions 2.19.3 dated 2020-02-11 and 2.21.1 dated 2020-07-08
DESCRIPTION | 30 MD5 | 763 ++++++++++++++-- NAMESPACE | 15 R/Rcpp_module_def.R | 48 - R/SBC.R | 61 + R/check_hmc_diagnostics.R | 6 R/cxxfunplus.R | 19 R/doctor_cppcode.R | 149 +-- R/exposeStanClass.R | 9 R/expose_stan_functions.R | 1 R/gqs_light.R | 2 R/loo.R | 125 ++ R/misc.R | 19 R/monitor.R | 33 R/plugin.R | 82 + R/rstan.R | 227 ++-- R/stan_plot.R | 3 R/stanc.R | 63 + R/stanfit-class.R | 1 R/stanmodel-class.R | 374 ++++--- R/zzz.R | 34 build/vignette.rds |binary inst/NEWS | 8 inst/doc/SBC.R | 3 inst/doc/SBC.Rmd | 6 inst/doc/SBC.html | 24 inst/doc/external.R | 2 inst/doc/external.Rmd | 9 inst/doc/external.html | 38 inst/doc/rstan.R | 4 inst/doc/rstan.Rmd | 4 inst/doc/rstan.html | 158 +-- inst/doc/stanfit-objects.R | 2 inst/doc/stanfit-objects.Rmd | 2 inst/doc/stanfit-objects.html | 255 ++--- inst/include/exporter.h | 4 inst/include/rstan/rcpp_module_def_for_rstan.hpp | 53 - inst/include/rstan/rstaninc.hpp | 1 inst/include/rstan_next |only man/plotting-functions.Rd | 2 man/rstan.Rd | 2 man/sbc.Rd | 7 man/stan.Rd | 2 man/stan_plot_diagnostics.Rd | 3 man/stanfit-method-loo-moment-match.Rd |only man/stanfit-method-loo.Rd | 89 + man/stanmodel-method-optimizing.Rd | 22 man/stanmodel-method-sampling.Rd | 2 src/Makevars | 24 src/Makevars.win | 17 src/Module.cpp |only src/init.cpp | 14 src/stan/analyze |only src/stan/callbacks |only src/stan/command |only src/stan/io |only src/stan/lang/ast |only src/stan/lang/ast.hpp |only src/stan/lang/compile_functions.hpp |only src/stan/lang/compiler.hpp |only src/stan/lang/function_signatures.h |only src/stan/lang/generator |only src/stan/lang/generator.hpp |only src/stan/lang/grammars/bare_type_grammar.hpp | 54 - src/stan/lang/grammars/bare_type_grammar_def.hpp | 93 - src/stan/lang/grammars/bare_type_grammar_inst.cpp | 9 src/stan/lang/grammars/block_var_decls_grammar_def.hpp | 284 +++-- src/stan/lang/grammars/block_var_decls_grammar_inst.cpp | 6 src/stan/lang/grammars/common_adaptors_def.hpp | 4 src/stan/lang/grammars/expression07_grammar.hpp | 51 - src/stan/lang/grammars/expression07_grammar_def.hpp | 58 - src/stan/lang/grammars/expression07_grammar_inst.cpp | 6 src/stan/lang/grammars/expression_grammar.hpp | 70 - src/stan/lang/grammars/expression_grammar_def.hpp | 157 +-- src/stan/lang/grammars/expression_grammar_inst.cpp | 6 src/stan/lang/grammars/functions_grammar.hpp | 72 - src/stan/lang/grammars/functions_grammar_def.hpp | 167 +-- src/stan/lang/grammars/functions_grammar_inst.cpp | 6 src/stan/lang/grammars/indexes_grammar.hpp | 91 - src/stan/lang/grammars/indexes_grammar_def.hpp | 158 +-- src/stan/lang/grammars/indexes_grammar_inst.cpp | 7 src/stan/lang/grammars/iterator_typedefs.hpp | 10 src/stan/lang/grammars/local_var_decls_grammar.hpp | 115 +- src/stan/lang/grammars/local_var_decls_grammar_def.hpp | 248 ++--- src/stan/lang/grammars/local_var_decls_grammar_inst.cpp | 6 src/stan/lang/grammars/program_grammar.hpp | 110 +- src/stan/lang/grammars/program_grammar_def.hpp | 252 ++--- src/stan/lang/grammars/program_grammar_inst.cpp | 6 src/stan/lang/grammars/semantic_actions.hpp | 40 src/stan/lang/grammars/semantic_actions_def.cpp | 439 ++++----- src/stan/lang/grammars/statement_2_grammar.hpp | 52 - src/stan/lang/grammars/statement_2_grammar_def.hpp | 92 - src/stan/lang/grammars/statement_2_grammar_inst.cpp | 6 src/stan/lang/grammars/statement_grammar.hpp | 190 +-- src/stan/lang/grammars/statement_grammar_def.hpp | 612 +++++------- src/stan/lang/grammars/statement_grammar_inst.cpp | 6 src/stan/lang/grammars/term_grammar.hpp | 169 +-- src/stan/lang/grammars/term_grammar_def.hpp | 654 +++++-------- src/stan/lang/grammars/term_grammar_inst.cpp | 6 src/stan/lang/grammars/whitespace_grammar.hpp | 21 src/stan/lang/grammars/whitespace_grammar_def.hpp | 31 src/stan/lang/grammars/whitespace_grammar_inst.cpp | 6 src/stan/lang/parser.hpp |only src/stan/lang/rethrow_located.hpp |only src/stan/mcmc |only src/stan/model |only src/stan/optimization |only src/stan/services |only src/stan/variational |only src/stan/version.hpp |only src/stan_fit.cpp |only src/stan_fit_base.cpp |only src/stan_fit_rccp.cpp |only vignettes/SBC.Rmd | 6 vignettes/external.Rmd | 9 vignettes/rstan.Rmd | 4 vignettes/stanfit-objects.Rmd | 2 117 files changed, 3896 insertions(+), 3316 deletions(-)
Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in
a tidy workflow. 'landscapemetrics' reimplements the most common metrics from
'FRAGSTATS' (<https://www.umass.edu/landeco/research/fragstats/fragstats.html>)
and new ones from the current literature on landscape metrics.
This package supports 'raster' spatial objects and takes
RasterLayer, RasterStacks, RasterBricks or lists of RasterLayer from the
'raster' package as input arguments. It further provides utility functions
to visualize patches, select metrics and building blocks to develop new
metrics.
Author: Maximillian H.K. Hesselbarth [aut, cre]
(<https://orcid.org/0000-0003-1125-9918>),
Marco Sciaini [aut] (<https://orcid.org/0000-0002-3042-5435>),
Jakub Nowosad [aut] (<https://orcid.org/0000-0002-1057-3721>),
Sebastian Hanss [aut] (<https://orcid.org/0000-0002-3990-4897>),
Laura J. Graham [ctb] (Input on package structure),
Jeffrey Hollister [ctb] (Input on package structure),
Kimberly A. With [ctb] (Input on package structure),
Florian Privé [ctb] (Original author of underlying C++ code for
get_nearestneighbour() function),
Project Nayuki [ctb] (Original author of underlying C++ code for
get_circumscribingcircle and lsm_p_circle),
Matt Strimas-Mackey [ctb] (Bugfix in sample_metrics())
Maintainer: Maximillian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between landscapemetrics versions 1.4.4 dated 2020-05-15 and 1.4.5 dated 2020-07-08
DESCRIPTION | 8 MD5 | 73 ++++---- NAMESPACE | 9 - NEWS.md | 11 + R/RcppExports.R | 4 R/calculate_lsm.R | 24 ++ R/get_boundaries.R | 200 +++++++++++++----------- R/get_centroids.R |only R/get_circumscribingcircle.R | 42 ++--- R/get_nearestneighbour.R | 237 +++++++++++------------------ R/lsm_c_gyrate_cv.R | 44 +++-- R/lsm_c_gyrate_mn.R | 44 +++-- R/lsm_c_gyrate_sd.R | 44 +++-- R/lsm_l_gyrate_cv.R | 41 +++-- R/lsm_l_gyrate_mn.R | 44 +++-- R/lsm_l_gyrate_sd.R | 41 +++-- R/lsm_p_core.R | 78 +++------ R/lsm_p_enn.R | 97 ++++------- R/lsm_p_gyrate.R | 84 +++++++--- R/lsm_p_ncore.R | 25 --- R/show_cores.R | 2 inst/doc/getstarted.html | 49 ++++- man/calculate_lsm.Rd | 19 +- man/get_boundaries.Rd | 60 ++++--- man/get_centroids.Rd |only man/get_nearestneighbour.Rd | 35 ++-- man/lsm_c_gyrate_cv.Rd | 19 +- man/lsm_c_gyrate_mn.Rd | 22 +- man/lsm_c_gyrate_sd.Rd | 19 +- man/lsm_l_gyrate_cv.Rd | 19 +- man/lsm_l_gyrate_mn.Rd | 22 +- man/lsm_l_gyrate_sd.Rd | 19 +- man/lsm_p_gyrate.Rd | 22 +- src/RcppExports.cpp | 16 + src/rcpp_get_nearest_neighbor.cpp | 24 ++ tests/testthat/test-get-boundaries.R | 92 +++++++---- tests/testthat/test-get-centroids.R |only tests/testthat/test-get-nearestneighbour.R | 51 +++--- tests/testthat/test-lsm-p-gyrate.R | 10 - 39 files changed, 941 insertions(+), 709 deletions(-)
More information about landscapemetrics at CRAN
Permanent link
Title: R Interface to Google Charts
Description: R interface to Google's chart tools, allowing users
to create interactive charts based on data frames. Charts
are displayed locally via the R HTTP help server. A modern
browser with an Internet connection is required and for some
charts a Flash player. The data remains local and is not
uploaded to Google.
Author: Markus Gesmann [aut, cre],
Diego de Castillo [aut],
Joe Cheng [ctb],
Ashley Baldry [ctb]
Maintainer: Markus Gesmann <markus.gesmann@googlemail.com>
Diff between googleVis versions 0.6.5 dated 2020-06-08 and 0.6.6 dated 2020-07-08
googleVis-0.6.5/googleVis/R/gvisIntensityMap.R |only googleVis-0.6.5/googleVis/demo/AnimatedGeoChart.R |only googleVis-0.6.5/googleVis/demo/WorldBank.R |only googleVis-0.6.5/googleVis/inst/brew |only googleVis-0.6.5/googleVis/inst/doc/Using_Roles_via_googleVis.R |only googleVis-0.6.5/googleVis/inst/doc/Using_Roles_via_googleVis.Rmd |only googleVis-0.6.5/googleVis/inst/doc/Using_Roles_via_googleVis.html |only googleVis-0.6.5/googleVis/inst/doc/Using_Trendlines_with_googleVis.R |only googleVis-0.6.5/googleVis/inst/doc/Using_Trendlines_with_googleVis.Rmd |only googleVis-0.6.5/googleVis/inst/doc/Using_Trendlines_with_googleVis.html |only googleVis-0.6.5/googleVis/inst/doc/Using_googleVis_with_knitr.R |only googleVis-0.6.5/googleVis/inst/doc/Using_googleVis_with_knitr.Rmd |only googleVis-0.6.5/googleVis/inst/doc/Using_googleVis_with_knitr.html |only googleVis-0.6.5/googleVis/inst/doc/googleVis.R |only googleVis-0.6.5/googleVis/inst/doc/googleVis.Rnw |only googleVis-0.6.5/googleVis/inst/doc/googleVis.pdf |only googleVis-0.6.5/googleVis/inst/gadgets |only googleVis-0.6.5/googleVis/inst/rsp |only googleVis-0.6.5/googleVis/man/gvisIntensityMap.Rd |only googleVis-0.6.5/googleVis/vignettes/Using_Roles_via_googleVis.Rmd |only googleVis-0.6.5/googleVis/vignettes/Using_Trendlines_with_googleVis.Rmd |only googleVis-0.6.5/googleVis/vignettes/Using_googleVis_with_knitr.Rmd |only googleVis-0.6.5/googleVis/vignettes/figures |only googleVis-0.6.5/googleVis/vignettes/googleVis.Rnw |only googleVis-0.6.5/googleVis/vignettes/mystyle.css |only googleVis-0.6.6/googleVis/DESCRIPTION | 16 googleVis-0.6.6/googleVis/MD5 | 83 googleVis-0.6.6/googleVis/NAMESPACE | 1 googleVis-0.6.6/googleVis/NEWS | 14 googleVis-0.6.6/googleVis/R/gvis.R | 9 googleVis-0.6.6/googleVis/R/gvisGeoChart.R | 58 googleVis-0.6.6/googleVis/R/gvisMap.R | 3 googleVis-0.6.6/googleVis/README.md | 18 googleVis-0.6.6/googleVis/build/googleVis.pdf |binary googleVis-0.6.6/googleVis/build/vignette.rds |binary googleVis-0.6.6/googleVis/demo/00Index | 2 googleVis-0.6.6/googleVis/demo/googleVis.R | 42 googleVis-0.6.6/googleVis/inst/doc/googleVis_examples.R | 25 googleVis-0.6.6/googleVis/inst/doc/googleVis_examples.Rmd | 36 googleVis-0.6.6/googleVis/inst/doc/googleVis_examples.html | 1413 ++-------- googleVis-0.6.6/googleVis/inst/doc/googleVis_intro.R |only googleVis-0.6.6/googleVis/inst/doc/googleVis_intro.Rmd |only googleVis-0.6.6/googleVis/inst/doc/googleVis_intro.html |only googleVis-0.6.6/googleVis/man/gvisGeoChart.Rd | 58 googleVis-0.6.6/googleVis/man/gvisMap.Rd | 3 googleVis-0.6.6/googleVis/vignettes/googleVis.bib | 4 googleVis-0.6.6/googleVis/vignettes/googleVis_examples.Rmd | 36 googleVis-0.6.6/googleVis/vignettes/googleVis_intro.Rmd |only 48 files changed, 461 insertions(+), 1360 deletions(-)
Title: Fetch and Analyze Data from 'WaterML' and 'WaterOneFlow' Web
Services
Description: Lets you connect to any of the 'Consortium of Universities for the Advancement of Hydrological Science, Inc.'
('CUAHSI') Water Data Center 'WaterOneFlow' web services
and read any 'WaterML' time series data file. To see list of available
web services, see <http://hiscentral.cuahsi.org>. All versions of 'WaterML'
(1.0, 1.1 and 2.0) and both types of the web service protocol ('SOAP' and 'REST') are supported.
The package has six data download functions: GetServices(): show all public web
services from the HIS Central Catalog. HISCentral_GetSites() and HISCentral_GetSeriesCatalog():
search for sites or time series from the HIS Central catalog based on geographic bounding box,
server, or keyword. GetVariables(): Show a data.frame with all variables on the server.
GetSites(): Show a data.frame with all sites on the server. GetSiteInfo(): Show what variables,
methods and quality control levels are available at the specific site. GetValues(): Given a site
code, variable code, start time and end time, fetch a data.frame of all the observation time
series data values. The GetValues() function can also parse 'WaterML' data from a custom URL or
from a local file. The package also has five data upload functions:
AddSites(), AddVariables(), AddMethods(), AddSources(), and AddValues().
These functions can be used for uploading data to a 'HydroServer Lite' Observations
Data Model ('ODM') database via the 'JSON' data upload web service interface.
Author: Jiri Kadlec [aut, cre]
Maintainer: Jiri Kadlec <jirikadlec2@gmail.com>
Diff between WaterML versions 1.9.0 dated 2020-02-12 and 1.9.5 dated 2020-07-08
DESCRIPTION | 13 LICENSE | 4 MD5 | 46 - NAMESPACE | 30 - R/GetServices.R | 156 ++--- R/GetSiteInfo.R | 1164 +++++++++++++++++++------------------- R/GetSites.R | 630 ++++++++++----------- R/GetValues.R | 1195 ++++++++++++++++++++-------------------- R/GetVariables.R | 454 +++++++-------- R/HISCentral_GetSeriesCatalog.R | 306 +++++----- R/HISCentral_GetSites.R | 276 ++++----- R/MakeSOAPEnvelope.R | 146 ++-- R/PackageDocumentation.R | 36 - R/WaterMLVersion.R | 88 +- R/WaterOneFlowNamespace.R | 62 +- R/WaterOneFlowVersion.R | 66 +- README.md | 28 build/vignette.rds |binary inst/CITATION | 40 - inst/doc/WaterML-Tutorial.R | 144 ++-- inst/doc/WaterML-Tutorial.Rmd | 314 +++++----- inst/doc/WaterML-Tutorial.html | 738 ++++++++++++------------ man/GetServices.Rd | 2 vignettes/WaterML-Tutorial.Rmd | 314 +++++----- 24 files changed, 3131 insertions(+), 3121 deletions(-)
More information about doebioresearch at CRAN
Permanent link
Title: Spatiotemporal Arrays, Raster and Vector Data Cubes
Description: Reading, manipulating, writing and plotting
spatiotemporal arrays (raster and vector data cubes) in 'R', using 'GDAL'
bindings provided by 'sf', and 'NetCDF' bindings by 'ncmeta' and 'RNetCDF'.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Michael Sumner [ctb] (<https://orcid.org/0000-0002-2471-7511>),
Etienne Racine [ctb],
Adriano Fantini [ctb],
David Blodgett [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between stars versions 0.4-2 dated 2020-07-01 and 0.4-3 dated 2020-07-08
DESCRIPTION | 10 - MD5 | 27 +- NAMESPACE | 1 NEWS.md | 8 R/ncdf.R | 284 ++++++++++++++++--------------- R/plot.R | 41 ++++ R/raster.R | 20 +- inst/doc/stars1.html | 17 - inst/doc/stars2.html | 4 inst/nc/sub.nc |only inst/nc/test_adaptor.cams_regional_fc.nc |only man/read_ncdf.Rd | 2 man/st_as_stars.Rd | 6 man/st_rgb.Rd |only tests/testthat/test_ncdf.R | 114 +++++++----- tests/testthat/test_rectilinear.R | 84 ++++----- 16 files changed, 362 insertions(+), 256 deletions(-)
Title: Statistical Modelling for Plant Size Distributions
Description: Developed for the following tasks. 1 ) Computing the probability density function,
cumulative distribution function, random generation, and estimating the parameters
of the eleven mixture models. 2 ) Point estimation of the parameters of two -
parameter Weibull distribution using twelve methods and three - parameter Weibull
distribution using nine methods. 3 ) The Bayesian inference for the three -
parameter Weibull distribution. 4 ) Estimating parameters of the three - parameter
Birnbaum - Saunders, generalized exponential, and Weibull distributions fitted to
grouped data using three methods including approximated maximum likelihood,
expectation maximization, and maximum likelihood. 5 ) Estimating the parameters
of the gamma, log-normal, and Weibull mixture models fitted to the grouped data
through the EM algorithm, 6 ) Estimating parameters of the nonlinear height curve
fitted to the height - diameter observation, 7 ) Estimating parameters, computing
probability density function, cumulative distribution function, and generating
realizations from gamma shape mixture model introduced by Venturini et al. (2008)
<doi:10.1214/07-AOAS156> , 8 ) The Bayesian inference, computing probability density function,
cumulative distribution function, and generating realizations from four - parameter
Johnson SB distribution, and 9 ) Robust multiple linear regression analysis when error
term follows skewed t distribution.
Author: Mahdi Teimouri
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>
Diff between ForestFit versions 0.6.0 dated 2020-06-27 and 0.6.1 dated 2020-07-08
DESCRIPTION | 29 ++++---- MD5 | 10 +-- R/ForestFit.R | 183 ++++++++++++++++++++++++++++---------------------------- man/rgsm.Rd | 2 man/rjsb.Rd | 2 man/skewtreg.Rd | 6 - 6 files changed, 118 insertions(+), 114 deletions(-)
Title: Estimation of Characteristics of Seasonal and Sporadic
Infectious Disease Outbreaks Using Generalized Additive
Modeling with Penalized Basis Splines
Description: Stochastic inference of infectious disease outcomes using generalized additive (mixed) models.
Author: Ben Artin [aut, cre, cph]
Maintainer: Ben Artin <ben@artins.org>
Diff between pspline.inference versions 0.23 dated 2020-07-01 and 0.24 dated 2020-07-08
pspline.inference-0.23/pspline.inference/vignettes/seasonal.csv |only pspline.inference-0.24/pspline.inference/DESCRIPTION | 17 pspline.inference-0.24/pspline.inference/MD5 | 18 pspline.inference-0.24/pspline.inference/README.md | 27 pspline.inference-0.24/pspline.inference/build/vignette.rds |binary pspline.inference-0.24/pspline.inference/inst/doc/seasonal.R | 22 pspline.inference-0.24/pspline.inference/inst/doc/seasonal.Rmd | 69 - pspline.inference-0.24/pspline.inference/inst/doc/seasonal.html | 497 ++++------ pspline.inference-0.24/pspline.inference/inst/extdata |only pspline.inference-0.24/pspline.inference/tests/testthat/test-estimate.R | 1 pspline.inference-0.24/pspline.inference/vignettes/seasonal.Rmd | 69 - 11 files changed, 286 insertions(+), 434 deletions(-)
More information about pspline.inference at CRAN
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Title: The IsoSpec Algorithm
Description: IsoSpec is a fine structure calculator used for obtaining the most
probable masses of a chemical compound given the frequencies of the composing
isotopes and their masses. It finds the smallest set of isotopologues with
a given probability. The probability is assumed to be that of the product of
multinomial distributions, each corresponding to one particular element and
parametrized by the frequencies of finding these elements in nature. These
numbers are supplied by IUPAC - the International Union of Pure and Applied
Chemistry.
Author: Mateusz Krzysztof Lacki and Michal Startek
Maintainer: Matteo Lacki <matteo.lacki@gmail.com>
Diff between IsoSpecR versions 2.1.0 dated 2020-05-27 and 2.1.1 dated 2020-07-08
DESCRIPTION | 8 - MD5 | 35 +++--- inst/CITATION | 15 ++ src/allocator.cpp | 15 +- src/allocator.h | 4 src/conf.h | 15 ++ src/cwrapper.cpp | 19 +++ src/cwrapper.h | 4 src/dirtyAllocator.cpp | 6 - src/dirtyAllocator.h | 4 src/fixedEnvelopes.cpp | 23 ++++ src/fixedEnvelopes.h | 4 src/isoSpec++.cpp | 26 ++-- src/isoSpec++.h | 8 - src/marginalTrek++.cpp | 272 +++++++++++++++++++++++++------------------------ src/marginalTrek++.h | 49 +++----- src/misc.h | 59 ++++++++++ src/platform.h | 2 src/pod_vector.h |only 19 files changed, 354 insertions(+), 214 deletions(-)
More information about UnifiedDoseFinding at CRAN
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Title: Alt String Implementation
Description: Provides an extendable and performant 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph],
Phillip Hazel [ctb] (Bundled PCRE2 code),
Zoltan Herczeg [ctb, cph] (Bundled PCRE2 code),
University of Cambridge [cph] (Bundled PCRE2 code),
Tilera Corporation [cph] (Stack-less Just-In-Time compiler bundled with
PCRE2),
Yann Collet [ctb, cph] (Yann Collet is the author of the bundled xxHash
code)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between stringfish versions 0.12.1 dated 2020-06-05 and 0.13.2 dated 2020-07-08
stringfish-0.12.1/stringfish/vignettes/bench_v1.png |only stringfish-0.13.2/stringfish/ChangeLog | 9 stringfish-0.13.2/stringfish/DESCRIPTION | 18 stringfish-0.13.2/stringfish/MD5 | 60 stringfish-0.13.2/stringfish/NAMESPACE | 11 stringfish-0.13.2/stringfish/R/RcppExports.R | 36 stringfish-0.13.2/stringfish/R/help_files.R | 154 + stringfish-0.13.2/stringfish/R/sf_functions.r | 38 stringfish-0.13.2/stringfish/R/zzz.R | 3 stringfish-0.13.2/stringfish/README.md | 73 stringfish-0.13.2/stringfish/configure | 81 - stringfish-0.13.2/stringfish/configure.ac | 65 stringfish-0.13.2/stringfish/inst/doc/vignette.R | 13 stringfish-0.13.2/stringfish/inst/doc/vignette.html | 175 +- stringfish-0.13.2/stringfish/inst/doc/vignette.rmd | 52 stringfish-0.13.2/stringfish/inst/include/sf_external.h | 18 stringfish-0.13.2/stringfish/inst/include/sf_internal.h | 129 + stringfish-0.13.2/stringfish/man/sf_ends.Rd |only stringfish-0.13.2/stringfish/man/sf_grepl.Rd | 6 stringfish-0.13.2/stringfish/man/sf_gsub.Rd | 6 stringfish-0.13.2/stringfish/man/sf_match.Rd |only stringfish-0.13.2/stringfish/man/sf_readLines.Rd | 2 stringfish-0.13.2/stringfish/man/sf_split.Rd |only stringfish-0.13.2/stringfish/man/sf_starts.Rd |only stringfish-0.13.2/stringfish/man/sf_tolower.Rd |only stringfish-0.13.2/stringfish/man/sf_toupper.Rd |only stringfish-0.13.2/stringfish/man/sf_trim.Rd |only stringfish-0.13.2/stringfish/man/sf_writeLines.Rd |only stringfish-0.13.2/stringfish/man/string_identical.Rd |only stringfish-0.13.2/stringfish/src/PCRE2/sljit/sljitConfigInternal.h | 2 stringfish-0.13.2/stringfish/src/RcppExports.cpp | 114 + stringfish-0.13.2/stringfish/src/sf_altrep.h | 4 stringfish-0.13.2/stringfish/src/sf_functions.cpp | 792 +++++++--- stringfish-0.13.2/stringfish/src/xxhash |only stringfish-0.13.2/stringfish/vignettes/bench_v2.png |only stringfish-0.13.2/stringfish/vignettes/vignette.rmd | 52 36 files changed, 1366 insertions(+), 547 deletions(-)
Title: A Grammar of Animated Graphics
Description: The grammar of graphics as implemented in the 'ggplot2' package has
been successful in providing a powerful API for creating static
visualisation. In order to extend the API for animated graphics this package
provides a completely new set of grammar, fully compatible with 'ggplot2'
for specifying transitions and animations in a flexible and extensible way.
Author: Thomas Lin Pedersen [aut, cre]
(<https://orcid.org/0000-0002-5147-4711>),
David Robinson [aut],
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between gganimate versions 1.0.5 dated 2020-02-09 and 1.0.6 dated 2020-07-08
DESCRIPTION | 8 - MD5 | 16 +- NEWS.md | 2 R/renderers.R | 3 build/vignette.rds |binary inst/doc/gganimate.html | 204 ++++++++++++++++++-------------- man/anim_save.Rd | 4 man/gif_file.Rd | 6 tests/testthat/test-transition-states.R | 2 9 files changed, 141 insertions(+), 104 deletions(-)
Title: World Register of Marine Species (WoRMS) Client
Description: Client for World Register of Marine Species
(<http://www.marinespecies.org/>). Includes functions for each
of the API methods, including searching for names by name, date and
common names, searching using external identifiers, fetching
synonyms, as well as fetching taxonomic children and
taxonomic classification.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between worrms versions 0.4.0 dated 2019-06-28 and 0.4.2 dated 2020-07-08
worrms-0.4.0/worrms/tests/fixtures/vcr_cassettes |only worrms-0.4.2/worrms/DESCRIPTION | 15 worrms-0.4.2/worrms/LICENSE | 2 worrms-0.4.2/worrms/MD5 | 153 - worrms-0.4.2/worrms/NEWS.md | 8 worrms-0.4.2/worrms/R/worrms-package.R | 4 worrms-0.4.2/worrms/README.md | 177 -- worrms-0.4.2/worrms/build/vignette.rds |binary worrms-0.4.2/worrms/inst/doc/worrms.Rmd | 220 +- worrms-0.4.2/worrms/inst/doc/worrms.html | 851 ++++++---- worrms-0.4.2/worrms/man/wm_children.Rd | 3 worrms-0.4.2/worrms/man/wm_records_date.Rd | 9 worrms-0.4.2/worrms/man/wm_records_name.Rd | 3 worrms-0.4.2/worrms/man/worrms-package.Rd | 6 worrms-0.4.2/worrms/tests/fixtures/wm_children.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_children_-error.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_children_.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_children_error.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_children_many.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_children_marine_only_false.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_children_marine_only_true.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_children_name.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_children_offset.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_classification.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_classification_.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_classification_many.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_common_id.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_common_id_.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_common_id_many.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_distribution.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_distribution_.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_distribution_many.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_external.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_external_.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_external_fishbase.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_external_many.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_id2name.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_id2name_.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_id2name_many.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_name2id.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_name2id_.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_name2id_many.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_ranks_id.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_ranks_id_error.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_ranks_name.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_ranks_name_error.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_record.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_record_by_external__many.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_record_by_external__tsn.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_record_by_external_fishbase.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_record_by_external_ncbi.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_record_by_external_tsn.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_record_error.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_record_plural_plural.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records__many.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records_common.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records_common_fuzzy_false.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records_common_fuzzy_true.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records_common_offset.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records_name.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records_name_fuzzy.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records_names.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records_names_fuzzy.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records_rank.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records_rank_error.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_records_taxamatch.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_sources.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_sources__many.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_synonyms.yml |only worrms-0.4.2/worrms/tests/fixtures/wm_synonyms__many.yml |only worrms-0.4.2/worrms/tests/testthat/helper-worrms.R | 3 worrms-0.4.2/worrms/tests/testthat/test-wm_children.R | 6 worrms-0.4.2/worrms/tests/testthat/test-wm_record.R | 1 worrms-0.4.2/worrms/tests/testthat/test-wm_records_date.R | 3 worrms-0.4.2/worrms/tests/testthat/test-wm_records_name.R | 15 worrms-0.4.2/worrms/tests/testthat/test-wm_records_names.R | 12 worrms-0.4.2/worrms/tests/testthat/test-wm_records_taxamatch.R | 2 worrms-0.4.2/worrms/vignettes/worrms.Rmd | 220 +- worrms-0.4.2/worrms/vignettes/worrms.Rmd.og |only 79 files changed, 970 insertions(+), 743 deletions(-)
Title: S3 Generics for Bayesian Analyses
Description: Provides S3 generic methods and some default implementations
for Bayesian analyses that generate Markov Chain Monte Carlo (MCMC) samples.
The purpose of 'universals' is to reduce package dependencies and conflicts.
The 'nlist' package implements many of the methods for its 'nlist' class.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>),
Kirill Müller [ctb] (<https://orcid.org/0000-0002-1416-3412>),
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between universals versions 0.0.2 dated 2020-06-11 and 0.0.3 dated 2020-07-08
universals-0.0.2/universals/R/testing.R |only universals-0.0.2/universals/tests/testthat/test-bind-chains.R |only universals-0.0.2/universals/tests/testthat/test-converged-pars.R |only universals-0.0.2/universals/tests/testthat/test-converged-terms.R |only universals-0.0.2/universals/tests/testthat/test-converged.R |only universals-0.0.2/universals/tests/testthat/test-esr-pars.R |only universals-0.0.2/universals/tests/testthat/test-esr-terms.R |only universals-0.0.2/universals/tests/testthat/test-esr.R |only universals-0.0.2/universals/tests/testthat/test-nterms.R |only universals-0.0.2/universals/tests/testthat/test-pars.R |only universals-0.0.2/universals/tests/testthat/test-rhat-pars.R |only universals-0.0.2/universals/tests/testthat/test-rhat-terms.R |only universals-0.0.2/universals/tests/testthat/test-rhat.R |only universals-0.0.3/universals/DESCRIPTION | 21 - universals-0.0.3/universals/MD5 | 141 ++++------ universals-0.0.3/universals/NEWS.md | 5 universals-0.0.3/universals/R/bind-chains.R | 5 universals-0.0.3/universals/R/collapse-chains.R | 5 universals-0.0.3/universals/R/converged-pars.R | 6 universals-0.0.3/universals/R/converged-terms.R | 6 universals-0.0.3/universals/R/converged.R | 5 universals-0.0.3/universals/R/dims.R | 15 - universals-0.0.3/universals/R/esr-pars.R | 6 universals-0.0.3/universals/R/esr-terms.R | 5 universals-0.0.3/universals/R/esr.R | 5 universals-0.0.3/universals/R/estimates.R | 11 universals-0.0.3/universals/R/nchains.R | 13 universals-0.0.3/universals/R/ndims.R | 18 - universals-0.0.3/universals/R/niters.R | 10 universals-0.0.3/universals/R/npars.R | 4 universals-0.0.3/universals/R/npdims.R | 9 universals-0.0.3/universals/R/nsams.R | 13 universals-0.0.3/universals/R/nsims.R | 9 universals-0.0.3/universals/R/nterms.R | 15 - universals-0.0.3/universals/R/pars.R | 9 universals-0.0.3/universals/R/pdims.R | 10 universals-0.0.3/universals/R/rhat-pars.R | 6 universals-0.0.3/universals/R/rhat-terms.R | 6 universals-0.0.3/universals/R/rhat.R | 5 universals-0.0.3/universals/R/set-pars.R | 12 universals-0.0.3/universals/R/split-chains.R | 11 universals-0.0.3/universals/README.md | 6 universals-0.0.3/universals/man/bind_chains.Rd | 6 universals-0.0.3/universals/man/collapse_chains.Rd | 6 universals-0.0.3/universals/man/converged.Rd | 6 universals-0.0.3/universals/man/converged_pars.Rd | 7 universals-0.0.3/universals/man/converged_terms.Rd | 7 universals-0.0.3/universals/man/dims.Rd | 6 universals-0.0.3/universals/man/esr.Rd | 6 universals-0.0.3/universals/man/esr_pars.Rd | 7 universals-0.0.3/universals/man/esr_terms.Rd | 6 universals-0.0.3/universals/man/estimates.Rd | 11 universals-0.0.3/universals/man/nchains.Rd | 12 universals-0.0.3/universals/man/ndims.Rd | 7 universals-0.0.3/universals/man/niters.Rd | 10 universals-0.0.3/universals/man/npars.Rd | 5 universals-0.0.3/universals/man/npdims.Rd | 9 universals-0.0.3/universals/man/nsams.Rd | 13 universals-0.0.3/universals/man/nsims.Rd | 9 universals-0.0.3/universals/man/nterms.Rd | 15 - universals-0.0.3/universals/man/pars.Rd | 9 universals-0.0.3/universals/man/pdims.Rd | 10 universals-0.0.3/universals/man/rhat.Rd | 6 universals-0.0.3/universals/man/rhat_pars.Rd | 7 universals-0.0.3/universals/man/rhat_terms.Rd | 7 universals-0.0.3/universals/man/set_pars.Rd | 12 universals-0.0.3/universals/man/split_chains.Rd | 11 universals-0.0.3/universals/man/universals-package.Rd | 5 universals-0.0.3/universals/tests/testthat/test-collapse-chains.R | 16 - universals-0.0.3/universals/tests/testthat/test-estimates.R | 54 +++ universals-0.0.3/universals/tests/testthat/test-nchains.R | 17 - universals-0.0.3/universals/tests/testthat/test-niters.R | 14 universals-0.0.3/universals/tests/testthat/test-npdims.R | 20 + universals-0.0.3/universals/tests/testthat/test-nsams.R | 23 + universals-0.0.3/universals/tests/testthat/test-nsims.R | 12 universals-0.0.3/universals/tests/testthat/test-pdims.R | 19 + universals-0.0.3/universals/tests/testthat/test-set-pars.R | 48 +++ universals-0.0.3/universals/tests/testthat/test-split-chains.R | 28 + 78 files changed, 482 insertions(+), 376 deletions(-)
Title: Sustainable Transport Planning
Description: Tools for transport planning with an emphasis on spatial transport
data and non-motorized modes. Enables common transport planning tasks including:
downloading and cleaning transport datasets; creating geographic "desire lines"
from origin-destination (OD) data; route assignment, locally and via
interfaces to routing services such as <http://cyclestreets.net/>;
calculation of route segment attributes such as bearing and aggregate flow;
and 'travel watershed' analysis.
See Lovelace and Ellison (2018) <doi:10.32614/RJ-2018-053>.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Richard Ellison [aut],
Malcolm Morgan [aut] (<https://orcid.org/0000-0002-9488-9183>),
Barry Rowlingson [ctb] (Author of overline),
Nick Bearman [ctb] (Co-author of gclip),
Nikolai Berkoff [ctb] (Co-author of line2route),
Scott Chamberlain [rev] (Scott reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/10),
Mark Padgham [ctb],
Andrea Gilardi [ctb] (<https://orcid.org/0000-0002-9424-7439>)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.6.1 dated 2020-06-23 and 0.6.2 dated 2020-07-08
DESCRIPTION | 10 +++--- MD5 | 25 ++++++++------- NAMESPACE | 2 + NEWS.md | 7 ++++ R/route.R | 19 ++++++++--- R/route_google.R |only inst/doc/stplanr-od.html | 4 +- inst/doc/stplanr-routing.R | 47 ++++++++++++++++++++--------- inst/doc/stplanr-routing.Rmd | 67 +++++++++++++++++++++++++++++++++--------- inst/doc/stplanr-routing.html | 55 +++++++++++++++++++++------------- inst/doc/stplanr.html | 4 +- inst/test-route-local-large.R |only man/route.Rd | 4 +- man/route_google.Rd |only vignettes/stplanr-routing.Rmd | 67 +++++++++++++++++++++++++++++++++--------- 15 files changed, 223 insertions(+), 88 deletions(-)
Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at <https://www.ncdc.noaa.gov/cdo-web/webservices/v2>, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Brooke Anderson [ctb],
Maëlle Salmon [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Alex Simmons [ctb],
Karthik Ram [ctb],
Hart Edmund [ctb],
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rnoaa versions 1.0.0 dated 2020-06-13 and 1.1.0 dated 2020-07-08
rnoaa-1.0.0/rnoaa/tests/fixtures/buoy_buoyid_case.yml |only rnoaa-1.0.0/rnoaa/tests/fixtures/homr.yml |only rnoaa-1.1.0/rnoaa/DESCRIPTION | 6 - rnoaa-1.1.0/rnoaa/MD5 | 76 +++++++--------- rnoaa-1.1.0/rnoaa/NEWS.md | 8 + rnoaa-1.1.0/rnoaa/R/argo.R | 7 - rnoaa-1.1.0/rnoaa/R/buoy.R | 5 - rnoaa-1.1.0/rnoaa/R/ncdc.r | 10 -- rnoaa-1.1.0/rnoaa/R/ncdc_datasets.r | 20 +--- rnoaa-1.1.0/rnoaa/R/ncdc_datatypes.r | 9 - rnoaa-1.1.0/rnoaa/README.md | 53 +++++------ rnoaa-1.1.0/rnoaa/build/vignette.rds |binary rnoaa-1.1.0/rnoaa/inst/doc/buoy_vignette.html | 20 +++- rnoaa-1.1.0/rnoaa/inst/doc/homr_vignette.html | 20 +++- rnoaa-1.1.0/rnoaa/inst/doc/ncdc_attributes.html | 20 +++- rnoaa-1.1.0/rnoaa/inst/doc/ncdc_vignette.html | 20 +++- rnoaa-1.1.0/rnoaa/inst/doc/ncdc_workflow.html | 20 +++- rnoaa-1.1.0/rnoaa/inst/doc/rnoaa.html | 20 +++- rnoaa-1.1.0/rnoaa/inst/doc/rnoaa_ropenaq.html | 20 +++- rnoaa-1.1.0/rnoaa/inst/doc/seaice_vignette.html | 20 +++- rnoaa-1.1.0/rnoaa/inst/doc/storms_vignette.html | 20 +++- rnoaa-1.1.0/rnoaa/inst/doc/swdi_vignette.html | 20 +++- rnoaa-1.1.0/rnoaa/man/argo.Rd | 3 rnoaa-1.1.0/rnoaa/man/buoy.Rd | 2 rnoaa-1.1.0/rnoaa/man/ncdc.Rd | 35 ------- rnoaa-1.1.0/rnoaa/man/ncdc_datasets.Rd | 15 --- rnoaa-1.1.0/rnoaa/man/ncdc_datatypes.Rd | 11 -- rnoaa-1.1.0/rnoaa/tests/testthat/test-arc2.R | 9 - rnoaa-1.1.0/rnoaa/tests/testthat/test-buoy.R | 21 +--- rnoaa-1.1.0/rnoaa/tests/testthat/test-check_response.r | 6 - rnoaa-1.1.0/rnoaa/tests/testthat/test-coops.R | 4 rnoaa-1.1.0/rnoaa/tests/testthat/test-cpc_prcp.R | 2 rnoaa-1.1.0/rnoaa/tests/testthat/test-ghcnd.R | 6 - rnoaa-1.1.0/rnoaa/tests/testthat/test-ghcnd_splitvars.R | 2 rnoaa-1.1.0/rnoaa/tests/testthat/test-homr.R | 53 +++++------ rnoaa-1.1.0/rnoaa/tests/testthat/test-meteo.R | 4 rnoaa-1.1.0/rnoaa/tests/testthat/test-seaice.R | 6 - rnoaa-1.1.0/rnoaa/tests/testthat/test-storm_events.R | 16 +-- rnoaa-1.1.0/rnoaa/tests/testthat/test-storms.R | 2 rnoaa-1.1.0/rnoaa/tests/testthat/test-vis_miss.R | 3 40 files changed, 325 insertions(+), 269 deletions(-)
Title: Recurrent Event Data Analysis
Description: Contains implementations of recurrent event data analysis routines
including (1) survival and recurrent event data simulation from
stochastic process point of view by the thinning method
proposed by Lewis and Shedler (1979) <doi:10.1002/nav.3800260304>
and the inversion method introduced in Cinlar (1975, ISBN:978-0486497976),
(2) the mean cumulative function (MCF) estimation by the
Nelson-Aalen estimator of the cumulative hazard rate function,
(3) two-sample recurrent event responses comparison with the pseudo-score
tests proposed by Lawless and Nadeau (1995) <doi:10.2307/1269617>,
(4) gamma frailty model with spline rate function following
Fu, et al. (2016) <doi:10.1080/10543406.2014.992524>.
Author: Wenjie Wang [aut, cre] (<https://orcid.org/0000-0003-0363-3180>),
Haoda Fu [aut],
Jun Yan [ctb] (<https://orcid.org/0000-0003-4401-7296>)
Maintainer: Wenjie Wang <wenjie.2.wang@uconn.edu>
Diff between reda versions 0.5.1 dated 2020-06-27 and 0.5.2 dated 2020-07-08
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 1 + NEWS.md | 8 ++++++++ R/rateReg.R | 12 ++++++------ README.md | 13 +++---------- inst/CITATION | 2 +- inst/doc/reda-Recur.html | 6 +++--- inst/doc/reda-intro.html | 6 +++--- inst/doc/reda-simulate.html | 6 +++--- 10 files changed, 42 insertions(+), 40 deletions(-)
Title: Profile Output Processing Tools for R
Description: Tools for examining Rprof profile output.
Author: Luke Tierney and Riad Jarjour
Maintainer: Luke Tierney <luke-tierney@uiowa.edu>
Diff between proftools versions 0.99-2 dated 2016-01-13 and 0.99-3 dated 2020-07-08
proftools-0.99-2/proftools/README |only proftools-0.99-3/proftools/DESCRIPTION | 6 proftools-0.99-3/proftools/MD5 | 39 proftools-0.99-3/proftools/NAMESPACE | 5 proftools-0.99-3/proftools/R/callgrind.R |only proftools-0.99-3/proftools/R/flamegraph.R |only proftools-0.99-3/proftools/R/prof.R | 871 +++++------------ proftools-0.99-3/proftools/R/proftools.R | 6 proftools-0.99-3/proftools/README.md |only proftools-0.99-3/proftools/build/vignette.rds |binary proftools-0.99-3/proftools/inst/doc/proftools.R | 35 proftools-0.99-3/proftools/inst/doc/proftools.Rnw | 38 proftools-0.99-3/proftools/inst/doc/proftools.pdf |binary proftools-0.99-3/proftools/man/hotPaths.Rd | 3 proftools-0.99-3/proftools/man/plotProfileCallGraph.Rd | 7 proftools-0.99-3/proftools/man/profileCallGraph2Dot.Rd | 5 proftools-0.99-3/proftools/man/profileExpr.Rd | 8 proftools-0.99-3/proftools/man/readProfileData.Rd | 6 proftools-0.99-3/proftools/man/styles.Rd | 2 proftools-0.99-3/proftools/man/summaries.Rd | 10 proftools-0.99-3/proftools/vignettes/proftools.Rnw | 38 proftools-0.99-3/proftools/vignettes/proftools.bib | 56 - proftools-0.99-3/proftools/vignettes/shinyGUI.png |only 23 files changed, 435 insertions(+), 700 deletions(-)
Title: Management of Survey Data and Presentation of Analysis Results
Description: An infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) 'SPSS' and
'Stata' files is provided. Further, the package allows to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates, which can be exported to 'LaTeX' and HTML.
Author: Martin Elff (with contributions from Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, Achim Zeileis)
Maintainer: Martin Elff <memisc@elff.eu>
Diff between memisc versions 0.99.25.5 dated 2020-06-30 and 0.99.25.6 dated 2020-07-08
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/codebook-methods.R | 23 ++++++++++++++--------- R/dedup-labels.R | 5 +++-- inst/ChangeLog | 11 +++++++++++ inst/doc/anes48.html | 2 +- 6 files changed, 38 insertions(+), 21 deletions(-)
Title: Linear Group Fixed Effects
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors with many levels as pure control variables.
Includes support for instrumental variables, conditional F statistics for weak instruments,
robust and multi-way clustered standard errors, as well as limited mobility bias correction.
Author: Simen Gaure [aut, cre] (<https://orcid.org/0000-0001-7251-8747>),
Grant McDermott [ctb],
Karl Dunkle Werner [ctb],
Matthieu Stigler [ctb],
Daniel Lüdecke [ctb]
Maintainer: Simen Gaure <Simen.Gaure@frisch.uio.no>
Diff between lfe versions 2.8-5 dated 2019-12-17 and 2.8-5.1 dated 2020-07-08
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/startup.R | 3 ++- 3 files changed, 7 insertions(+), 6 deletions(-)
Title: Groupwise Statistics, LSmeans, Linear Contrasts, Utilities
Description: Contains:
1) Facilities for working with grouped data: 'do' something to data
stratified 'by' some variables.
2) LSmeans (least-squares means), general linear contrasts.
3) Miscellaneous other utilities.
Author: Søren Højsgaard <sorenh@math.aau.dk> and Ulrich Halekoh
<uhalekoh@health.sdu.dk>
Maintainer: Søren Højsgaard <sorenh@math.aau.dk>
Diff between doBy versions 4.6.6 dated 2020-05-16 and 4.6.7 dated 2020-07-08
DESCRIPTION | 12 +++++----- MD5 | 52 ++++++++++++++++++++++---------------------- NAMESPACE | 3 ++ NEWS | 5 ++++ R/by-lmBy.R | 2 - R/by-splitBy.R | 2 - R/by-subsetBy.R | 2 - R/by-summaryBy.R | 2 - R/by-transformBy.R | 2 - R/esticon.R | 4 ++- R/firstlastObs.R | 2 - R/interaction_plot.R |only R/linest_LSmeans.R | 2 - R/linest_compute.R | 2 - R/tidy.R | 4 +-- inst/doc/doby.pdf |binary inst/doc/linest-lsmeans.pdf |binary man/by-lmby.Rd | 2 - man/by-subset.Rd | 2 - man/by-summary.Rd | 2 - man/by-transform.Rd | 2 - man/esticon.Rd | 2 - man/firstlastobs.Rd | 2 - man/interaction-plot.Rd |only man/linest.Rd | 2 - man/ls-means.Rd | 2 - man/tidy-esticon.Rd | 2 - man/tidy-linest.Rd | 2 - 28 files changed, 64 insertions(+), 52 deletions(-)
Title: Extract Genotypes from a PLINK .bed File
Description: A matrix-like data structure that allows for efficient,
convenient, and scalable subsetting of binary genotype/phenotype files
generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole
genome association analysis toolset, without loading the entire file into
memory.
Author: Alexander Grueneberg [aut, cre],
Gustavo de los Campos [ctb]
Maintainer: Alexander Grueneberg <cran@agrueneberg.info>
Diff between BEDMatrix versions 2.0.2 dated 2020-03-11 and 2.0.3 dated 2020-07-08
BEDMatrix-2.0.2/BEDMatrix/tests/testthat |only BEDMatrix-2.0.2/BEDMatrix/tests/testthat.R |only BEDMatrix-2.0.3/BEDMatrix/DESCRIPTION | 14 +-- BEDMatrix-2.0.3/BEDMatrix/MD5 | 30 ++++---- BEDMatrix-2.0.3/BEDMatrix/NEWS.md | 6 + BEDMatrix-2.0.3/BEDMatrix/R/BEDMatrix.R | 74 ++++++++++++--------- BEDMatrix-2.0.3/BEDMatrix/README.md | 4 - BEDMatrix-2.0.3/BEDMatrix/inst/include/BEDMatrix.h | 20 ++--- BEDMatrix-2.0.3/BEDMatrix/inst/tinytest |only BEDMatrix-2.0.3/BEDMatrix/man/BEDMatrix-class.Rd | 9 +- BEDMatrix-2.0.3/BEDMatrix/man/BEDMatrix-package.Rd | 5 - BEDMatrix-2.0.3/BEDMatrix/man/BEDMatrix.Rd | 12 +-- BEDMatrix-2.0.3/BEDMatrix/src/mapping.c | 12 --- BEDMatrix-2.0.3/BEDMatrix/tests/tinytest.R |only 14 files changed, 101 insertions(+), 85 deletions(-)
Title: Scale Mixture of Skew-Normal Linear Mixed Models
Description: It fits scale mixture of skew-normal linear mixed models using an expectation–maximization (EM) type algorithm, including some possibilities for modeling the within-subject dependence. Details can be found in Schumacher, Lachos and Matos (2020) <arXiv:2002.01040>.
Author: Fernanda L. Schumacher [aut, cre],
Larissa A. Matos [aut],
Victor H. Lachos [aut]
Maintainer: Fernanda L. Schumacher <fernandalschumacher@gmail.com>
Diff between skewlmm versions 0.2.1 dated 2020-07-06 and 0.2.2 dated 2020-07-08
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 1 - R/auxfunctions-sim.R | 31 +++++++++++++++++++++---------- R/auxfunctions.R | 30 ++++++++++++++++++++---------- man/smsn.lmm.Rd | 4 ++-- 6 files changed, 52 insertions(+), 32 deletions(-)
Title: Ensemble Boolean Model Biomarker Analysis
Description: Analysis and visualization of an ensemble of boolean models for
biomarker discovery in cancer cell networks. The package allows to easily
load the simulation data results of the DrugLogics software pipeline which predicts synergistic drug
combinations in cancer cell lines (developed by the DrugLogics research group
in NTNU). It has generic functions that can be used to split a boolean model
dataset to model groups with regards to the models predictive performance (number of true
positive predictions/Matthews correlation coefficient score) or synergy prediction based on a given set
of gold standard synergies and find the average activity difference per network
node between all model group pairs. Thus, given user-specific thresholds,
important nodes (biomarkers) can be accessed in the sense that they make the
models predict specific synergies (synergy biomarkers) or have better
performance in general (performance biomarkers). Lastly, if the
boolean models have a specific equation form and differ only in their link operator,
link operator biomarkers can also be found.
Author: John Zobolas [aut, cph, cre] (<https://orcid.org/0000-0002-3609-8674>)
Maintainer: John Zobolas <bblodfon@gmail.com>
Diff between emba versions 0.1.5 dated 2020-07-01 and 0.1.6 dated 2020-07-08
DESCRIPTION | 8 - MD5 | 8 - NEWS.md | 4 inst/doc/emba.html | 172 ++++++++++++++++++++++------------------- tests/testthat/test-analysis.R | 38 ++++----- 5 files changed, 125 insertions(+), 105 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-04 0.1.4
2019-03-17 0.1.3
2018-11-20 0.1.2
2018-10-28 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-20 1.2.17
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-14 1.1.0
2018-04-19 1.0.2
2017-11-20 1.0.1
2017-10-30 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-14 0.1.1
2017-08-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-17 0.1.0
2016-11-08 0.0.8
2016-10-11 0.0.7
2016-10-06 0.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-15 0.0.1.1
2020-05-25 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-02 1.0.3
2017-12-05 1.0.1
2017-11-22 1.0
2017-10-09 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-06 1.1
2019-01-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-17 1.0.3
2015-08-05 1.0.2
2015-01-05 1.0.1
Title: Variance Components Testing for Linear and Nonlinear Mixed
Effects Models
Description: An implementation of the Likelihood ratio Test (LRT) for testing that,
in a (non)linear mixed effects model, the variances of a subset of the random
effects are equal to zero. There is no restriction on the subset of variances
that can be tested: for example, it is possible to test that all the variances
are equal to zero. Note that the implemented test is asymptotic.
This package should be used on model fits from packages 'nlme', 'lmer', and 'saemix'.
Charlotte Baey, Paul-Henry Cournède and Estelle Kuhn (2019) <doi:10.1016/j.csda.2019.01.014>.
Author: Charlotte Baey [aut, cre] (<https://orcid.org/0000-0002-1413-1058>),
Estelle Kuhn [aut]
Maintainer: Charlotte Baey <charlotte.baey@univ-lille.fr>
Diff between varTestnlme versions 0.1.0 dated 2020-01-10 and 0.2.0 dated 2020-07-07
DESCRIPTION | 10 +- MD5 | 40 ++++++----- NAMESPACE | 1 NEWS.md | 4 + R/bootstrapFIM.R |only R/chiBarObject.R | 4 - R/extractFIMnlme.R | 1 R/funcStruct.R | 48 ++++++++++--- R/getVarCovlme4.R |only R/getVarCovnlme.R |only R/varTest.R | 160 +++++++++++++++++++++++++--------------------- README.md | 47 ++++++++----- build/vignette.rds |binary inst/doc/varTestnlme.R | 86 ++++++++++++++++++++++-- inst/doc/varTestnlme.Rmd | 111 +++++++++++++++++++++++++++---- inst/doc/varTestnlme.html | 115 +++++++++++++++++++++++++++------ man/bootinvFIM.Rd |only man/dfchisqbar-methods.Rd | 4 - man/funcStruct.Rd |only man/getVarCovlme4.Rd |only man/getVarCovnlme.Rd |only man/pchisqbar-methods.Rd | 4 - man/varTest.Rd | 22 +++--- vignettes/varTestnlme.Rmd | 111 +++++++++++++++++++++++++++---- vignettes/web_only |only 25 files changed, 572 insertions(+), 196 deletions(-)
Title: Tools for Visualizing Gaussian Mixture Models
Description: The main function, plot_GMM, is used for plotting output from Gaussian mixture models (GMMs),
including both densities and overlaying mixture weight component curves from the fit GMM. The package
also include the function, plot_cut_point, which plots the cutpoint (mu) from the GMM over a histogram
of the distribution with several color options. Finally, the package includes the function, plot_mix_comps,
which is used in the plot_GMM function, and can be used to create a custom plot for overlaying mixture
component curves from GMMs. For the plot_mix_comps function, usage most often will be specifying
the "fun" argument within "stat_function" in a ggplot2 object.
Author: Philip Waggoner [aut, cre],
Fong Chan [aut]
Maintainer: Philip Waggoner <philip.waggoner@gmail.com>
Diff between plotGMM versions 0.2.1 dated 2019-06-28 and 0.2.2 dated 2020-07-07
DESCRIPTION | 11 +++++------ MD5 | 5 +++-- NEWS | 15 +++++---------- R/zzz.R |only 4 files changed, 13 insertions(+), 18 deletions(-)
Title: 'Rcpp' Bindings for the 'simdjson' Header-Only Library for
'JSON' Parsing
Description: The 'JSON' format is ubiquitous for data interchange, and the
'simdjson' library written by Daniel Lemire (and many contributors) provides
a high-performance parser for these files which by relying on parallel 'SIMD'
instruction manages to parse these files as faster than disk speed. See the
<arXiv:1902.08318> paper for more details about 'simdjson'. This package is
at present still a fairly thin and not fully complete wrapper that does not
aim to replace the existing and excellent 'JSON' packages for R.
Author: Dirk Eddelbuettel, Brendan Knapp
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSimdJson versions 0.0.6 dated 2020-06-25 and 0.1.0 dated 2020-07-07
RcppSimdJson-0.0.6/RcppSimdJson/man/dot-deserialize_json.Rd |only RcppSimdJson-0.1.0/RcppSimdJson/ChangeLog | 49 RcppSimdJson-0.1.0/RcppSimdJson/DESCRIPTION | 13 RcppSimdJson-0.1.0/RcppSimdJson/MD5 | 46 RcppSimdJson-0.1.0/RcppSimdJson/NAMESPACE | 1 RcppSimdJson-0.1.0/RcppSimdJson/R/RcppExports.R | 77 - RcppSimdJson-0.1.0/RcppSimdJson/R/fload.R |only RcppSimdJson-0.1.0/RcppSimdJson/R/fparse.R |only RcppSimdJson-0.1.0/RcppSimdJson/R/utils.R |only RcppSimdJson-0.1.0/RcppSimdJson/build/partial.rdb |binary RcppSimdJson-0.1.0/RcppSimdJson/inst/NEWS.Rd | 16 RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson.hpp | 2 RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/common.hpp | 138 +- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize.hpp | 515 ++++---- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/Type_Doctor.hpp | 600 +++++----- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/dataframe.hpp | 353 ++--- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/matrix.hpp | 438 ++++--- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/scalar.hpp | 186 +-- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/simplify.hpp | 271 ++-- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/deserialize/vector.hpp | 230 +-- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/RcppSimdJson/utils.hpp | 124 -- RcppSimdJson-0.1.0/RcppSimdJson/inst/include/simdjson.cpp | 53 RcppSimdJson-0.1.0/RcppSimdJson/inst/include/simdjson.h | 142 +- RcppSimdJson-0.1.0/RcppSimdJson/inst/tinytest/test_fparse_fload.R |only RcppSimdJson-0.1.0/RcppSimdJson/man/fparse.Rd |only RcppSimdJson-0.1.0/RcppSimdJson/src/RcppExports.cpp | 22 RcppSimdJson-0.1.0/RcppSimdJson/src/deserialize.cpp | 506 ++++---- 27 files changed, 2017 insertions(+), 1765 deletions(-)
Title: Tools for Cleaning Up Messy Files
Description: Some tools for cleaning up messy 'Excel' files to
be suitable for R. People who have been working with 'Excel' for years
built more or less complicated sheets with names, characters, formats
that are not homogeneous. To be able to use them in R nowadays, we
built a set of functions that will avoid the majority of importation
problems and keep all the data at best.
Author: Vincent Guyader [aut, cre] (<https://orcid.org/0000-0003-0671-9270>),
Sébastien Rochette [aut] (<https://orcid.org/0000-0002-1565-9313>),
ThinkR [cph]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between thinkr versions 0.13 dated 2018-06-21 and 0.15 dated 2020-07-07
thinkr-0.13/thinkr/man/thinkr.Rd |only thinkr-0.15/thinkr/DESCRIPTION | 47 +++- thinkr-0.15/thinkr/MD5 | 73 +++---- thinkr-0.15/thinkr/NAMESPACE | 101 +++++----- thinkr-0.15/thinkr/R/all_ggplot_to_docx.R | 152 +++++++-------- thinkr-0.15/thinkr/R/clean_names.R | 229 +++++++++++------------ thinkr-0.15/thinkr/R/excel_names.R | 87 ++++----- thinkr-0.15/thinkr/R/thinkr.r | 18 - thinkr-0.15/thinkr/R/utils-pipe.R | 2 thinkr-0.15/thinkr/R/write_csv.R | 65 +++--- thinkr-0.15/thinkr/README.md | 239 +++++++++++++++++++++---- thinkr-0.15/thinkr/inst |only thinkr-0.15/thinkr/man/all_ggplot_to_pptx.Rd | 62 +++--- thinkr-0.15/thinkr/man/as_mon_numeric.Rd | 34 +-- thinkr-0.15/thinkr/man/clean_levels.Rd | 42 ++-- thinkr-0.15/thinkr/man/clean_names.Rd | 54 ++--- thinkr-0.15/thinkr/man/clean_vec.Rd | 58 +++--- thinkr-0.15/thinkr/man/dot-efface_test.Rd |only thinkr-0.15/thinkr/man/dput_levels.Rd | 42 ++-- thinkr-0.15/thinkr/man/excel_col.Rd | 32 +-- thinkr-0.15/thinkr/man/excel_to_ncol.Rd | 34 +-- thinkr-0.15/thinkr/man/figures |only thinkr-0.15/thinkr/man/find_name.Rd | 46 ++-- thinkr-0.15/thinkr/man/from_excel_to_posixt.Rd | 32 +-- thinkr-0.15/thinkr/man/grapes-ni-grapes.Rd | 42 ++-- thinkr-0.15/thinkr/man/gsub2.Rd | 40 ++-- thinkr-0.15/thinkr/man/is.01.Rd | 48 ++--- thinkr-0.15/thinkr/man/is.12.Rd | 48 ++--- thinkr-0.15/thinkr/man/is_full_figures.Rd | 44 ++-- thinkr-0.15/thinkr/man/is_full_na.Rd | 40 ++-- thinkr-0.15/thinkr/man/is_likert.Rd | 50 ++--- thinkr-0.15/thinkr/man/look_like_a_number.Rd | 34 +-- thinkr-0.15/thinkr/man/make_unique.Rd | 50 ++--- thinkr-0.15/thinkr/man/ncol_to_excel.Rd | 34 +-- thinkr-0.15/thinkr/man/peep.Rd | 72 +++---- thinkr-0.15/thinkr/man/pipe.Rd | 24 +- thinkr-0.15/thinkr/man/replace_pattern.Rd | 72 +++---- thinkr-0.15/thinkr/man/save_as_csv.Rd | 66 +++--- thinkr-0.15/thinkr/man/set_col_type.Rd | 40 ++-- thinkr-0.15/thinkr/man/thinkr-package.Rd |only 40 files changed, 1172 insertions(+), 981 deletions(-)
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Ingo Feinerer [aut],
Martin Kober [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between skmeans versions 0.2-11 dated 2017-08-08 and 0.2-12 dated 2020-07-07
DESCRIPTION | 11 ++++++----- MD5 | 8 +++++--- R/skmeans.R | 7 ++++++- build/partial.rdb |binary inst/po |only po |only 6 files changed, 17 insertions(+), 9 deletions(-)
Title: Cache 'CRAN'-Like Metadata and R Packages
Description: Metadata and package cache for CRAN-like repositories.
This is a utility package to be used by package management tools
that want to take advantage of caching.
Author: Gábor Csárdi [aut, cre]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pkgcache versions 1.0.7 dated 2020-04-18 and 1.1.0 dated 2020-07-07
pkgcache-1.0.7/pkgcache/tests/testthat/helper-async.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test-async-http.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test-cache.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test-cran-metadata.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test-metadata-api.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test-metadata-cache.R |only pkgcache-1.0.7/pkgcache/tests/testthat/test.R |only pkgcache-1.1.0/pkgcache/DESCRIPTION | 12 - pkgcache-1.1.0/pkgcache/MD5 | 70 ++++---- pkgcache-1.1.0/pkgcache/NAMESPACE | 9 + pkgcache-1.1.0/pkgcache/NEWS.md | 16 + pkgcache-1.1.0/pkgcache/R/aaa-async.R | 21 +- pkgcache-1.1.0/pkgcache/R/async-http.R | 1 pkgcache-1.1.0/pkgcache/R/metadata-cache.R | 77 ++++++-- pkgcache-1.1.0/pkgcache/R/packages-gz.R | 9 - pkgcache-1.1.0/pkgcache/R/platform.R |only pkgcache-1.1.0/pkgcache/R/repo-status.R |only pkgcache-1.1.0/pkgcache/R/utils.R | 70 ++++---- pkgcache-1.1.0/pkgcache/man/bioc_version.Rd |only pkgcache-1.1.0/pkgcache/man/cranlike_metadata_cache.Rd | 2 pkgcache-1.1.0/pkgcache/man/current_r_platform.Rd |only pkgcache-1.1.0/pkgcache/man/default_cran_mirror.Rd |only pkgcache-1.1.0/pkgcache/man/pkgcache-package.Rd | 87 ++++------ pkgcache-1.1.0/pkgcache/man/repo_status.Rd |only pkgcache-1.1.0/pkgcache/tests/async/helper.R | 22 -- pkgcache-1.1.0/pkgcache/tests/async/setup-httpbin.R |only pkgcache-1.1.0/pkgcache/tests/async/teardown-httpbin.R |only pkgcache-1.1.0/pkgcache/tests/async/test-call-function.R | 6 pkgcache-1.1.0/pkgcache/tests/async/test-cancel-early.R | 16 - pkgcache-1.1.0/pkgcache/tests/async/test-deferred-http.R | 15 - pkgcache-1.1.0/pkgcache/tests/async/test-deferred-then.R | 24 -- pkgcache-1.1.0/pkgcache/tests/async/test-http.R | 74 +++----- pkgcache-1.1.0/pkgcache/tests/async/test-parallel.R | 6 pkgcache-1.1.0/pkgcache/tests/async/test-process.R | 7 pkgcache-1.1.0/pkgcache/tests/async/test-when-any.R | 5 pkgcache-1.1.0/pkgcache/tests/test-async.R | 4 pkgcache-1.1.0/pkgcache/tests/testthat.R | 4 pkgcache-1.1.0/pkgcache/tests/testthat/setup-httpbin.R |only pkgcache-1.1.0/pkgcache/tests/testthat/teardown-httpbin.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-1-metadata-cache-1.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-1-metadata-cache-2.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-1-metadata-cache-3.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-2-metadata-api.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-3-cran-metadata.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-4-async-http.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-5-cache.R |only pkgcache-1.1.0/pkgcache/tests/testthat/test-metadata-utils.R | 2 pkgcache-1.1.0/pkgcache/tests/testthat/test-utils.R | 32 +-- 48 files changed, 310 insertions(+), 281 deletions(-)
Title: Model Wrappers for Discriminant Analysis
Description: Bindings for additional classification models for use with the
'parsnip' package. Models include flavors of discriminant analysis, such as
linear (Fisher (1936) <doi:10.1111/j.1469-1809.1936.tb02137.x>), regularized
(Friedman (1989) <doi:10.1080/01621459.1989.10478752>), and flexible
(Hastie, Tibshirani, and Buja (1994) <doi:10.1080/01621459.1994.10476866>),
as well as naive Bayes classifiers (Hand and Yu (2007)
<doi:10.1111/j.1751-5823.2001.tb00465.x>).
Author: Max Kuhn [aut, cre] (<https://orcid.org/0000-0003-2402-136X>),
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between discrim versions 0.0.2 dated 2020-04-09 and 0.1.0 dated 2020-07-07
DESCRIPTION | 22 ++++++++----- MD5 | 39 ++++++++++++------------ NEWS.md | 4 ++ R/discrim_flexible_data.R | 11 ++++++ R/discrim_lin_data.R | 22 +++++++++++++ R/discrim_regularized_data.R | 11 ++++++ R/naive_Bayes.R | 2 - R/naive_Bayes_data.R | 21 +++++++++++++ inst/WORDLIST | 9 +++++ man/discrim_flexible.Rd | 10 +++--- man/discrim_linear.Rd | 6 ++- man/discrim_regularized.Rd | 8 +++-- man/figures/README-example-1.png |binary man/naive_Bayes.Rd | 35 +++++++++++++-------- man/rmd/discrim-flexible-engine.Rmd | 17 +++++++++- man/rmd/discrim-lin-engine.Rmd | 15 ++++++++- man/rmd/discrim-regularized-engine.Rmd | 16 ++++++++-- man/rmd/naive-Bayes-engine.Rmd | 20 ++++++++++-- man/rmd/setup.Rmd |only tests/testthat/test-naive-Bayes.R | 43 +++++++++++---------------- tests/testthat/test-naive-Bayes_naivebayes.R | 41 ++++++++++--------------- 21 files changed, 244 insertions(+), 108 deletions(-)
Title: Client for the CORE API
Description: Client for the CORE API (<https://core.ac.uk/docs/>).
CORE (<https://core.ac.uk>) aggregates open access research
outputs from repositories and journals worldwide and make them
available to the public.
Author: Scott Chamberlain [aut, cre],
Aristotelis Charalampous [ctb],
Simon Goring [ctb]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between rcoreoa versions 0.3.0 dated 2018-09-20 and 0.4.0 dated 2020-07-07
rcoreoa-0.3.0/rcoreoa/R/advanced_search_helper_functions.R |only rcoreoa-0.3.0/rcoreoa/inst/doc/cored_vignette.R |only rcoreoa-0.3.0/rcoreoa/inst/doc/cored_vignette.Rmd |only rcoreoa-0.3.0/rcoreoa/inst/doc/cored_vignette.html |only rcoreoa-0.3.0/rcoreoa/tests/testthat/test-fail-well.R |only rcoreoa-0.3.0/rcoreoa/vignettes/cored_vignette.Rmd |only rcoreoa-0.4.0/rcoreoa/DESCRIPTION | 20 - rcoreoa-0.4.0/rcoreoa/LICENSE | 2 rcoreoa-0.4.0/rcoreoa/MD5 | 73 ++-- rcoreoa-0.4.0/rcoreoa/NAMESPACE | 4 rcoreoa-0.4.0/rcoreoa/NEWS.md | 13 rcoreoa-0.4.0/rcoreoa/R/core_advanced_search.R | 148 +++++---- rcoreoa-0.4.0/rcoreoa/R/core_articles.R | 6 rcoreoa-0.4.0/rcoreoa/R/core_articles_dedup.R |only rcoreoa-0.4.0/rcoreoa/R/core_articles_history.R | 5 rcoreoa-0.4.0/rcoreoa/R/core_articles_search.R | 4 rcoreoa-0.4.0/rcoreoa/R/core_journals.R | 5 rcoreoa-0.4.0/rcoreoa/R/core_repos_search.R | 4 rcoreoa-0.4.0/rcoreoa/R/core_search.R | 23 - rcoreoa-0.4.0/rcoreoa/R/rcoreoa-package.R | 13 rcoreoa-0.4.0/rcoreoa/R/zzz.R | 41 ++ rcoreoa-0.4.0/rcoreoa/README.md | 155 +--------- rcoreoa-0.4.0/rcoreoa/build/vignette.rds |binary rcoreoa-0.4.0/rcoreoa/inst/doc/rcoreoa.Rmd |only rcoreoa-0.4.0/rcoreoa/inst/doc/rcoreoa.html |only rcoreoa-0.4.0/rcoreoa/man/core_advanced_search.Rd | 109 ++++--- rcoreoa-0.4.0/rcoreoa/man/core_articles.Rd | 37 +- rcoreoa-0.4.0/rcoreoa/man/core_articles_dedup.Rd |only rcoreoa-0.4.0/rcoreoa/man/core_articles_history.Rd | 7 rcoreoa-0.4.0/rcoreoa/man/core_articles_pdf.Rd | 2 rcoreoa-0.4.0/rcoreoa/man/core_articles_search.Rd | 43 ++ rcoreoa-0.4.0/rcoreoa/man/core_repos_search.Rd | 7 rcoreoa-0.4.0/rcoreoa/man/core_search.Rd | 19 - rcoreoa-0.4.0/rcoreoa/man/rcoreoa-package.Rd | 14 rcoreoa-0.4.0/rcoreoa/tests/fixtures |only rcoreoa-0.4.0/rcoreoa/tests/testthat/helper-rcoreoa.R |only rcoreoa-0.4.0/rcoreoa/tests/testthat/test-core_advanced_search.R | 89 +---- rcoreoa-0.4.0/rcoreoa/tests/testthat/test-core_articles.R |only rcoreoa-0.4.0/rcoreoa/tests/testthat/test-core_articles_history.R |only rcoreoa-0.4.0/rcoreoa/tests/testthat/test-core_search.R | 45 ++ rcoreoa-0.4.0/rcoreoa/vignettes/rcoreoa.Rmd |only rcoreoa-0.4.0/rcoreoa/vignettes/rcoreoa.Rmd.og |only 42 files changed, 455 insertions(+), 433 deletions(-)
Title: 'Petfinder' API Wrapper
Description: Wrapper of the 'Petfinder API' <https://www.petfinder.com/developers/v2/docs/> that implements
methods for interacting with and extracting data from the 'Petfinder' database. The 'Petfinder
REST API' allows access to the 'Petfinder' database, one of the largest online databases of
adoptable animals and animal welfare organizations across North America.
Author: Aaron Schlegel
Maintainer: Aaron Schlegel <aaron@aaronschlegel.me>
Diff between PetfindeR versions 2.0.0 dated 2019-08-23 and 2.1.0 dated 2020-07-07
PetfindeR-2.0.0/PetfindeR/build/PetfindeR_2.0.0.tar.gz |only PetfindeR-2.1.0/PetfindeR/DESCRIPTION | 12 - PetfindeR-2.1.0/PetfindeR/MD5 | 22 - PetfindeR-2.1.0/PetfindeR/R/api.R | 75 +++++- PetfindeR-2.1.0/PetfindeR/README.md | 23 - PetfindeR-2.1.0/PetfindeR/build/vignette.rds |binary PetfindeR-2.1.0/PetfindeR/inst/doc/Introduction_to_PetfindeR.R | 36 +-- PetfindeR-2.1.0/PetfindeR/inst/doc/Introduction_to_PetfindeR.html | 115 +++++---- PetfindeR-2.1.0/PetfindeR/man/animals.Rd | 24 +- PetfindeR-2.1.0/PetfindeR/man/dot-Petfinder.class.Rd | 117 +++++++++- PetfindeR-2.1.0/PetfindeR/man/organizations.Rd | 16 + PetfindeR-2.1.0/PetfindeR/tests/testthat/test-animals.R | 11 PetfindeR-2.1.0/PetfindeR/vignettes/Introduction_to_PetfindeR.md |only 13 files changed, 333 insertions(+), 118 deletions(-)
Title: Formal Concept Analysis
Description: Provides tools to perform fuzzy formal concept analysis, presented in Wille (1982) <doi:10.1007/978-3-642-01815-2_23> and in Ganter and Obiedkov (2016) <doi:10.1007/978-3-662-49291-8>.
It provides functions to load and save a formal context, extract its concept lattice and implications.
In addition, one can use the implications to compute semantic closures of fuzzy sets and, thus, build recommendation systems.
Author: Domingo Lopez Rodriguez [aut, cre]
(<https://orcid.org/0000-0002-0172-1585>),
Angel Mora [aut],
Jesus Dominguez [aut],
Ana Villalon [aut],
Ian Johnson [ctb]
Maintainer: Domingo Lopez Rodriguez <dominlopez@uma.es>
Diff between fcaR versions 1.0.3 dated 2020-01-19 and 1.0.4 dated 2020-07-07
DESCRIPTION | 10 - MD5 | 77 +++++---- NAMESPACE | 29 ++- NEWS.md | 13 + R/RcppExports.R | 4 R/as_SparseSet.R |only R/batch_apply.R | 3 R/compute_closure.R | 32 +++ R/concept_lattice.R | 274 ++++++++++++++++++++++++++++++++-- R/export_to_latex.R | 22 +- R/export_to_string.R | 3 R/formal_context.R | 221 ++++++++++++++++++++++++--- R/imp_to_basis.R |only R/implication_set.R | 44 ++++- R/process_batch.R | 3 R/sparse_concept.R | 18 +- R/sparse_set.R | 77 ++++++++- R/to_fraction.R |only README.md | 11 - inst/doc/arules.html | 34 ++-- inst/doc/concept_lattice.html | 52 +++--- inst/doc/implications.html | 50 +++--- man/ConceptLattice.Rd | 55 ++++++ man/FormalContext.Rd | 55 ++++++ man/ImplicationSet.Rd | 32 +++ man/SparseConcept.Rd | 15 + man/SparseSet.Rd | 44 +++++ man/as_SparseSet.Rd |only man/as_vector.Rd |only man/cobre32.Rd | 6 man/cobre61.Rd | 6 man/planets.Rd | 6 man/vegas.Rd | 6 src/RcppExports.cpp | 9 - src/nextclosure.cpp | 96 +++++++---- src/vector_operations.cpp | 34 ++++ src/vector_operations.h | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test-concept_lattice.R | 11 + tests/testthat/test-formal_context.R | 2 tests/testthat/test-implication_set.R | 12 + tests/testthat/test-sparse_set.R | 9 + 42 files changed, 1143 insertions(+), 233 deletions(-)
Title: Rearrangement Distances Between Unrooted Phylogenetic Trees
Description: Fast calculation of the Subtree Prune and Regraft (SPR),
Tree Bisection and Reconnection (TBR) and Replug distances between
unrooted trees, using the algorithms of Whidden and
Matsen (2017) <arxiv:1511.07529>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Chris Whidden [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TBRDist versions 1.0.0 dated 2020-07-01 and 1.0.1 dated 2020-07-07
DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/RcppExports.R | 30 +++++++++++++++--------------- R/uspr.R | 24 ++++++++++++++---------- inst/doc/TBRDist.html | 4 ++-- man/TreeRearrangementDistances.Rd | 10 +++++----- man/dot-PrepareTrees.Rd | 1 + src/RcppExports.cpp | 30 +++++++++++++++--------------- src/uspr.cpp | 33 ++++++++++++++++----------------- src/uspr/tbr.h | 1 - 12 files changed, 90 insertions(+), 82 deletions(-)
Title: Strategy Estimation
Description: Variants of strategy estimation (Dal Bo & Frechette, 2011, <doi:10.1257/aer.101.1.411>), including the model with parameters for the choice probabilities of the strategies (Breitmoser, 2015, <doi:10.1257/aer.20130675>), and the model with individual level covariates for the selection of strategies by individuals (Dvorak & Fehrler, 2018, <doi:10.2139/ssrn.2986445>).
Author: Fabian Dvorak
Maintainer: Fabian Dvorak <fabian.dvorak@uni.kn>
Diff between stratEst versions 1.0.0 dated 2020-06-23 and 1.0.1 dated 2020-07-07
DESCRIPTION | 10 - MD5 | 34 +-- R/stratEst_check.R | 1 R/stratEst_check_data.R | 6 R/stratEst_model.R | 9 R/stratEst_post.R | 46 ++++ R/stratEst_simulate.R | 2 R/stratEst_simulate_check_strategies.R | 2 R/stratEst_strategy.R | 2 R/stratEst_test.R | 19 -- R/summary_stratEst_model.R | 304 ++++++++++++++++++++------------- man/stratEst.model.Rd | 31 +-- man/stratEst.test.Rd | 3 src/Makevars.win | 2 src/stratEst.cpp | 213 ++++++++++------------- src/stratEst_data.cpp | 3 tests/testthat/tests.examples.R | 22 +- tests/testthat/tests.stratEst.R | 245 +++++++++++--------------- 18 files changed, 504 insertions(+), 450 deletions(-)
Title: Bayesian Inference for A|B and Bandit Marketing Tests
Description: Uses simple Bayesian conjugate prior update rules to calculate
the win probability of each option, value remaining in the test, and
percent lift over the baseline for various marketing objectives.
References:
Fink, Daniel (1997) "A Compendium of Conjugate Priors" <https://www.johndcook.com/CompendiumOfConjugatePriors.pdf>.
Stucchio, Chris (2015) "Bayesian A/B Testing at VWO" <http://cdn2.hubspot.net/hubfs/310840/VWO_SmartStats_technical_whitepaper.pdf>.
Author: Ryan Angi
Maintainer: Ryan Angi <rangi@redventures.com>
Diff between grizbayr versions 1.2.2 dated 2020-06-04 and 1.2.3 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 7 +++++++ R/estimate_win_prob_given_posterior.R | 2 +- 4 files changed, 15 insertions(+), 8 deletions(-)
Title: Gene by Environment Interaction and Conditional Gene Tests for
Nuclear Families
Description: Does family-based gene by environment interaction tests, joint gene, gene-environment interaction test, and a test of a set of genes conditional on another set of genes.
Author: Thomas Hoffmann <tjhoffm@gmail.com>
Maintainer: Thomas Hoffmann <tjhoffm@gmail.com>
Diff between fbati versions 1.0-3 dated 2018-04-23 and 1.0-4 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/REXP_joint.R | 3 ++- R/fbatmeev.R | 6 ++++-- src/fbati_init.c | 25 +++++++++++++++++++------ src/fbatmeev.cpp | 7 +++++++ 6 files changed, 41 insertions(+), 18 deletions(-)
Title: Biochemically Intuitive Generalized Loewe Model
Description: Response surface methods for drug synergy analysis. Available
methods include generalized and classical Loewe formulations as well as Highest
Single Agent methodology. Response surfaces can be plotted in an interactive
3-D plot and formal statistical tests for presence of synergistic effects are
available. Implemented methods and tests are described in the article
"BIGL: Biochemically Intuitive Generalized Loewe null model for prediction
of the expected combined effect compatible with partial agonism and antagonism"
by Koen Van der Borght, Annelies Tourny, Rytis Bagdziunas, Olivier Thas,
Maxim Nazarov, Heather Turner, Bie Verbist & Hugo Ceulemans (2017)
<doi:10.1038/s41598-017-18068-5>.
Author: Heather Turner, Annelies Tourny, Olivier Thas, Maxim Nazarov, Rytis Bagdziunas
Maintainer: Maxim Nazarov <maxim.nazarov@openanalytics.eu>
Diff between BIGL versions 1.4.3 dated 2020-02-20 and 1.5.1 dated 2020-07-07
DESCRIPTION | 10 ++--- MD5 | 50 +++++++++++++------------- R/MarginalFit-methods.R | 76 +++++++++++++++++++++++++++++++--------- R/generalizedLoewe.R | 11 ++++- inst/NEWS | 3 + inst/doc/analysis.html | 12 +++--- inst/doc/methodology.html | 4 +- man/CPBootstrap.Rd | 10 ++++- man/bootstrapData.Rd | 9 +++- man/constructFormula.Rd | 8 +++- man/directAntivirals.Rd | 6 ++- man/directAntivirals_ALL.Rd | 6 ++- man/fitMarginals.Rd | 13 +++++- man/fitSurface.Rd | 27 ++++++++++---- man/generateData.Rd | 14 +++++-- man/getTransformations.Rd | 3 - man/maxR.Rd | 20 ++++++++-- man/meanR.Rd | 19 +++++++--- man/plot.MarginalFit.Rd | 9 ++++ man/plot.ResponseSurface.Rd | 3 - man/plot.maxR.Rd | 18 ++++++--- man/plotResponseSurface.Rd | 27 ++++++++++---- man/predictOffAxis.Rd | 9 +++- man/simulateNull.Rd | 9 +++- tests/testthat/test_calls.R | 21 +++++------ tests/testthat/test_marginals.R | 12 +++++- 26 files changed, 288 insertions(+), 121 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-24 0.1.1
2017-05-12 0.0.1
Title: Interface to Data from the SAFE Project
Description: The SAFE Project (<https://www.safeproject.net/>) is a large
scale ecological experiment in Malaysian Borneo that explores the impact
of habitat fragmentation and conversion on ecosystem function and services.
Data collected at the SAFE Project is made available under a common format
through the Zenodo data repository and this package makes it easy to
discover and load that data into R.
Author: Andy Aldersley [aut],
David Orme [aut, cre] (<https://orcid.org/0000-0002-7005-1394>)
Maintainer: David Orme <d.orme@imperial.ac.uk>
Diff between safedata versions 1.0.1 dated 2020-06-02 and 1.0.5 dated 2020-07-07
safedata-1.0.1/safedata/man/get_phylogeny.Rd |only safedata-1.0.1/safedata/man/load_safe_worksheet.Rd |only safedata-1.0.5/safedata/DESCRIPTION | 10 safedata-1.0.5/safedata/MD5 | 43 safedata-1.0.5/safedata/NAMESPACE | 4 safedata-1.0.5/safedata/R/files.R |only safedata-1.0.5/safedata/R/index.R | 82 safedata-1.0.5/safedata/R/load_safe.R | 228 + safedata-1.0.5/safedata/R/locations.R | 14 safedata-1.0.5/safedata/R/metadata.R | 85 safedata-1.0.5/safedata/R/safedata.R | 12 safedata-1.0.5/safedata/R/taxa.R | 350 ++ safedata-1.0.5/safedata/inst/doc/overview.html | 498 +--- safedata-1.0.5/safedata/inst/doc/using_safe_data.R | 18 safedata-1.0.5/safedata/inst/doc/using_safe_data.Rmd | 52 safedata-1.0.5/safedata/inst/doc/using_safe_data.html | 1197 +++++----- safedata-1.0.5/safedata/inst/safedata_example_dir/template_ClareWfunctiondata.xlsx |only safedata-1.0.5/safedata/man/file_status.Rd |only safedata-1.0.5/safedata/man/get_file_details.Rd |only safedata-1.0.5/safedata/man/get_taxon_coverage.Rd | 2 safedata-1.0.5/safedata/man/get_taxon_graph.Rd |only safedata-1.0.5/safedata/man/igraph_to_phylo.Rd |only safedata-1.0.5/safedata/man/insert_dataset.Rd |only safedata-1.0.5/safedata/man/load_index.Rd | 5 safedata-1.0.5/safedata/man/set_safe_dir.Rd | 3 safedata-1.0.5/safedata/man/show_concepts.Rd | 4 safedata-1.0.5/safedata/vignettes/using_safe_data.Rmd | 52 27 files changed, 1540 insertions(+), 1119 deletions(-)
Title: Data Language Engine for 'knitr' / 'rmarkdown'
Description: Implements a data language engine for incorporating data directly in
'rmarkdown' documents so that they can be made completely standalone.
Author: David M. Kaplan [aut, cre, cph]
(<https://orcid.org/0000-0001-6087-359X>, dmkaplan2000)
Maintainer: David M. Kaplan <dmkaplan2000@gmail.com>
Diff between knitrdata versions 0.3.1 dated 2020-06-23 and 0.4.1 dated 2020-07-07
DESCRIPTION | 9 MD5 | 29 - NAMESPACE | 3 NEWS.md | 12 R/create_chunks.R | 12 R/data_engine.R | 4 R/rstudio_addins.R |only README.md | 9 build/vignette.rds |binary inst/doc/data_language_engine_vignette.Rmd | 20 inst/doc/data_language_engine_vignette.html | 710 ++++++++++++++-------------- inst/rstudio |only man/create_chunk.Rd | 11 man/create_data_chunk_dialog.Rd |only man/insert_data_chunk_dialog.Rd |only man/list_rmd_chunks.Rd | 9 man/remove_chunks_dialog.Rd |only vignettes/data_language_engine_vignette.Rmd | 20 18 files changed, 482 insertions(+), 366 deletions(-)
Title: Diversity Through Hill Numbers
Description: Calculate taxonomic, functional and phylogenetic diversity measures
through Hill Numbers proposed by Chao, Chiu and Jost (2014)
<doi:10.1146/annurev-ecolsys-120213-091540>.
Author: Daijiang Li
Maintainer: Daijiang Li <daijianglee@gmail.com>
Diff between hillR versions 0.4.0 dated 2018-11-19 and 0.5.0 dated 2020-07-07
DESCRIPTION | 14 ++-- MD5 | 50 ++++++++-------- NEWS.md | 7 ++ R/hill_func.R | 47 ++++++++------- R/hill_func_parti.R | 28 ++++----- R/hill_func_parti_pairwise.R | 57 +++++++++++++------ R/hill_phylo.R | 69 +++++++++-------------- R/hill_phylo_parti.R | 75 ++++++++++++++----------- R/hill_phylo_parti_pairwise.R | 70 +++++++++++++++++------ R/hill_taxa.R | 2 R/hill_taxa_parti.R | 25 +++++--- R/hill_taxa_parti_pairwise.R | 47 ++++++++++----- README.md | 116 +++++++++++++++++++++------------------ man/hillR.Rd | 1 man/hill_func.Rd | 21 +++++-- man/hill_func_parti.Rd | 26 +++++--- man/hill_func_parti_pairwise.Rd | 21 +++++-- man/hill_phylo.Rd | 18 ++++-- man/hill_phylo_parti.Rd | 26 ++++++-- man/hill_phylo_parti_pairwise.Rd | 31 ++++++++-- man/hill_taxa.Rd | 2 man/hill_taxa_parti.Rd | 22 +++++-- man/hill_taxa_parti_pairwise.Rd | 18 +++++- tests/testthat/test_hill_func.R | 2 tests/testthat/test_hill_phyl.R | 20 ++++++ tests/testthat/test_hill_taxa.R | 18 +++++- 26 files changed, 524 insertions(+), 309 deletions(-)
Title: GOV.UK Style Templates for R Markdown
Description: A suite of custom R Markdown formats and templates
for authoring web pages styled with the GOV.UK Design System.
Author: Crown Copyright 2019 [cph],
Duncan Garmonsway [aut, cre]
Maintainer: Duncan Garmonsway <duncan.garmonsway@digital.cabinet-office.gov.uk>
Diff between govdown versions 0.9.1 dated 2020-05-13 and 0.10.0 dated 2020-07-07
DESCRIPTION | 6 MD5 | 10 NEWS.md | 5 inst/rmarkdown/resources/all.js | 52 +-- inst/rmarkdown/resources/govuk.css | 479 +++++++++++----------------------- inst/rmarkdown/resources/govukish.css | 479 +++++++++++----------------------- 6 files changed, 365 insertions(+), 666 deletions(-)
Title: Computational Methods for Numerical Analysis
Description: Provides the source and examples for James P. Howard, II,
"Computational Methods for Numerical Analysis with R,"
<https://jameshoward.us/cmna>, a book on numerical
methods in R.
Author: James Howard [aut, cre] (<https://orcid.org/0000-0003-4530-1547>)
Maintainer: James Howard <jh@jameshoward.us>
Diff between cmna versions 1.0.2 dated 2019-07-23 and 1.0.3 dated 2020-07-07
DESCRIPTION | 18 ++++----- MD5 | 90 ++++++++++++++++++++++++------------------------ README.md | 23 ++++++++++-- inst/CITATION | 2 - inst/COPYRIGHTS | 2 - man/adaptint.Rd | 26 +++++++++---- man/bezier.Rd | 11 +++-- man/bilinear.Rd | 28 +++++++++----- man/bisection.Rd | 11 +++-- man/choleskymatrix.Rd | 15 +++++--- man/cmna-package.Rd | 4 +- man/cubicspline.Rd | 27 +++++++++----- man/detmatrix.Rd | 15 +++++--- man/division.Rd | 17 +++++---- man/fibonacci.Rd | 17 +++++---- man/gaussint.Rd | 15 +++++--- man/gdls.Rd | 15 +++++--- man/giniquintile.Rd | 26 +++++++++---- man/goldsect.Rd | 11 +++-- man/gradient.Rd | 11 +++-- man/hillclimbing.Rd | 11 +++-- man/horner.Rd | 17 +++++---- man/invmatrix.Rd | 15 +++++--- man/isPrime.Rd | 17 +++++---- man/iterativematrix.Rd | 15 +++++--- man/linterp.Rd | 27 +++++++++----- man/lumatrix.Rd | 15 +++++--- man/mcint.Rd | 15 +++++--- man/midpt.Rd | 26 +++++++++---- man/newton.Rd | 11 +++-- man/nn.Rd | 10 +++-- man/nthroot.Rd | 17 +++++---- man/polyinterp.Rd | 27 +++++++++----- man/pwiselinterp.Rd | 27 +++++++++----- man/quadratic.Rd | 17 +++++---- man/refmatrix.Rd | 15 +++++--- man/revolution-solid.Rd | 15 +++++--- man/romberg.Rd | 26 +++++++++---- man/rowops.Rd | 15 +++++--- man/sa.Rd | 11 +++-- man/secant.Rd | 11 +++-- man/simp.Rd | 26 +++++++++---- man/simp38.Rd | 26 +++++++++---- man/trap.Rd | 26 +++++++++---- man/tridiagmatrix.Rd | 15 +++++--- man/vecnorm.Rd | 15 +++++--- 46 files changed, 545 insertions(+), 307 deletions(-)
Title: Modeling Workflows
Description: Managing both a 'parsnip' model and a preprocessor, such as a
model formula or recipe from 'recipes', can often be challenging. The goal
of 'workflows' is to streamline this process by bundling the model alongside
the preprocessor, all within the same object.
Author: Davis Vaughan [aut, cre],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between workflows versions 0.1.1 dated 2020-03-17 and 0.1.2 dated 2020-07-07
workflows-0.1.1/workflows/R/data.R |only workflows-0.1.1/workflows/data |only workflows-0.1.1/workflows/man/bivariate.Rd |only workflows-0.1.2/workflows/DESCRIPTION | 16 workflows-0.1.2/workflows/MD5 | 64 +-- workflows-0.1.2/workflows/NAMESPACE | 2 workflows-0.1.2/workflows/NEWS.md | 10 workflows-0.1.2/workflows/R/fit-action-model.R | 2 workflows-0.1.2/workflows/R/fit.R | 113 +++++- workflows-0.1.2/workflows/R/pre-action-formula.R | 18 - workflows-0.1.2/workflows/R/pre-action-recipe.R | 20 - workflows-0.1.2/workflows/R/predict.R | 13 workflows-0.1.2/workflows/R/pull.R | 37 +- workflows-0.1.2/workflows/R/tidy.R |only workflows-0.1.2/workflows/R/utils.R | 10 workflows-0.1.2/workflows/R/workflow.R | 28 + workflows-0.1.2/workflows/R/workflows-package.R | 1 workflows-0.1.2/workflows/README.md | 25 + workflows-0.1.2/workflows/build/vignette.rds |binary workflows-0.1.2/workflows/inst/doc/stages.html | 16 workflows-0.1.2/workflows/man/add_formula.Rd | 176 +++++++++- workflows-0.1.2/workflows/man/add_model.Rd | 107 ++++++ workflows-0.1.2/workflows/man/add_recipe.Rd | 17 workflows-0.1.2/workflows/man/figures |only workflows-0.1.2/workflows/man/fit-workflow.Rd | 132 ++++++- workflows-0.1.2/workflows/man/predict-workflow.Rd | 19 - workflows-0.1.2/workflows/man/rmd |only workflows-0.1.2/workflows/man/tidy.workflow.Rd |only workflows-0.1.2/workflows/man/workflow-extractors.Rd | 37 +- workflows-0.1.2/workflows/man/workflow.Rd | 133 +++++++ workflows-0.1.2/workflows/man/workflows-internals.Rd | 16 workflows-0.1.2/workflows/man/workflows-package.Rd | 3 workflows-0.1.2/workflows/tests/testthat/out/test-print-workflow-fit.txt | 2 workflows-0.1.2/workflows/tests/testthat/test-fit.R | 87 ++++ workflows-0.1.2/workflows/tests/testthat/test-tidy.R |only workflows-0.1.2/workflows/vignettes/extras/getting-started.Rmd | 7 36 files changed, 951 insertions(+), 160 deletions(-)
Title: Genotype Quality Control with 'PLINK'
Description: Genotyping arrays enable the direct measurement of an individuals
genotype at thousands of markers. 'plinkQC' facilitates genotype quality
control for genetic association studies as described by Anderson and
colleagues (2010) <doi:10.1038/nprot.2010.116>. It makes 'PLINK' basic
statistics (e.g. missing genotyping rates per individual, allele frequencies
per genetic marker) and relationship functions accessible from 'R' and
generates a per-individual and per-marker quality control report.
Individuals and markers that fail the quality control can subsequently be
removed to generate a new, clean dataset. Removal of individuals based on
relationship status is optimised to retain as many individuals as possible
in the study.
Author: Hannah Meyer [aut, cre] (<https://orcid.org/0000-0003-4564-0899>)
Maintainer: Hannah Meyer <hannah.v.meyer@gmail.com>
Diff between plinkQC versions 0.3.0 dated 2019-10-19 and 0.3.2 dated 2020-07-07
plinkQC-0.3.0/plinkQC/inst/extdata/data.fail-IBD.IDs |only plinkQC-0.3.2/plinkQC/DESCRIPTION | 8 plinkQC-0.3.2/plinkQC/MD5 | 99 +++++----- plinkQC-0.3.2/plinkQC/NEWS.md | 49 +++- plinkQC-0.3.2/plinkQC/R/individualQC.R | 52 +++-- plinkQC-0.3.2/plinkQC/R/plinkQC.R | 2 plinkQC-0.3.2/plinkQC/R/utils.R | 2 plinkQC-0.3.2/plinkQC/README.md | 14 - plinkQC-0.3.2/plinkQC/build/vignette.rds |binary plinkQC-0.3.2/plinkQC/inst/doc/AncestryCheck.R | 4 plinkQC-0.3.2/plinkQC/inst/doc/AncestryCheck.Rmd | 48 +++- plinkQC-0.3.2/plinkQC/inst/doc/AncestryCheck.pdf |binary plinkQC-0.3.2/plinkQC/inst/doc/Genomes1000.R | 2 plinkQC-0.3.2/plinkQC/inst/doc/Genomes1000.Rmd | 6 plinkQC-0.3.2/plinkQC/inst/doc/Genomes1000.pdf |binary plinkQC-0.3.2/plinkQC/inst/doc/HapMap.R | 2 plinkQC-0.3.2/plinkQC/inst/doc/HapMap.Rmd | 14 + plinkQC-0.3.2/plinkQC/inst/doc/HapMap.pdf |binary plinkQC-0.3.2/plinkQC/inst/doc/plinkQC.R | 41 ++-- plinkQC-0.3.2/plinkQC/inst/doc/plinkQC.Rmd | 14 + plinkQC-0.3.2/plinkQC/inst/doc/plinkQC.pdf |binary plinkQC-0.3.2/plinkQC/man/checkPlink.Rd | 2 plinkQC-0.3.2/plinkQC/man/check_ancestry.Rd | 38 +++ plinkQC-0.3.2/plinkQC/man/check_het_and_miss.Rd | 19 + plinkQC-0.3.2/plinkQC/man/check_hwe.Rd | 15 + plinkQC-0.3.2/plinkQC/man/check_maf.Rd | 16 + plinkQC-0.3.2/plinkQC/man/check_relatedness.Rd | 20 +- plinkQC-0.3.2/plinkQC/man/check_sex.Rd | 26 ++ plinkQC-0.3.2/plinkQC/man/check_snp_missingness.Rd | 15 + plinkQC-0.3.2/plinkQC/man/cleanData.Rd | 28 ++ plinkQC-0.3.2/plinkQC/man/evaluate_check_ancestry.Rd | 30 ++- plinkQC-0.3.2/plinkQC/man/evaluate_check_het_and_miss.Rd | 10 - plinkQC-0.3.2/plinkQC/man/evaluate_check_relatedness.Rd | 10 - plinkQC-0.3.2/plinkQC/man/evaluate_check_sex.Rd | 25 +- plinkQC-0.3.2/plinkQC/man/perIndividualQC.Rd | 66 ++++-- plinkQC-0.3.2/plinkQC/man/perMarkerQC.Rd | 23 +- plinkQC-0.3.2/plinkQC/man/plinkQC.Rd | 3 plinkQC-0.3.2/plinkQC/man/relatednessFilter.Rd | 22 +- plinkQC-0.3.2/plinkQC/man/run_check_ancestry.Rd | 12 - plinkQC-0.3.2/plinkQC/man/run_check_heterozygosity.Rd | 12 - plinkQC-0.3.2/plinkQC/man/run_check_missingness.Rd | 12 - plinkQC-0.3.2/plinkQC/man/run_check_relatedness.Rd | 16 + plinkQC-0.3.2/plinkQC/man/run_check_sex.Rd | 12 - plinkQC-0.3.2/plinkQC/man/testNumerics.Rd | 3 plinkQC-0.3.2/plinkQC/tests/testthat/data.HapMapIII_no_samples.eigenvec |only plinkQC-0.3.2/plinkQC/tests/testthat/data.HapMapIII_some_samples.eigenvec |only plinkQC-0.3.2/plinkQC/tests/testthat/test-individualQC.R | 26 ++ plinkQC-0.3.2/plinkQC/tests/testthat/test-utils.R | 19 - plinkQC-0.3.2/plinkQC/vignettes/AncestryCheck.Rmd | 48 +++- plinkQC-0.3.2/plinkQC/vignettes/Genomes1000.Rmd | 6 plinkQC-0.3.2/plinkQC/vignettes/HapMap.Rmd | 14 + plinkQC-0.3.2/plinkQC/vignettes/plinkQC.Rmd | 14 + 52 files changed, 647 insertions(+), 272 deletions(-)
Title: Larger-than-RAM Disk-Based Data Manipulation Framework
Description: A disk-based data manipulation tool for working with
large-than-RAM datasets. Aims to lower the barrier-to-entry for
manipulating large datasets by adhering closely to popular and
familiar data manipulation paradigms like 'dplyr' verbs and
'data.table' syntax.
Author: Dai ZJ [aut, cre],
Jacky Poon [ctb]
Maintainer: Dai ZJ <zhuojia.dai@gmail.com>
Diff between disk.frame versions 0.3.6 dated 2020-06-13 and 0.3.7 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/add_chunk.r | 7 ++++--- R/pull.r | 2 +- README.md | 47 ++++++++++++++++++++--------------------------- man/add_chunk.Rd | 4 +++- man/pull.disk.frame.Rd | 2 +- 8 files changed, 44 insertions(+), 44 deletions(-)
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') that
provides stricter checking and better formatting than the traditional
data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 3.0.1 dated 2020-04-20 and 3.0.2 dated 2020-07-07
tibble-3.0.1/tibble/build/tibble.pdf |only tibble-3.0.2/tibble/DESCRIPTION | 15 tibble-3.0.2/tibble/MD5 | 112 ++--- tibble-3.0.2/tibble/NAMESPACE | 3 tibble-3.0.2/tibble/NEWS.md | 19 tibble-3.0.2/tibble/R/add.R | 8 tibble-3.0.2/tibble/R/as_tibble.R | 11 tibble-3.0.2/tibble/R/compat-lazyeval.R | 2 tibble-3.0.2/tibble/R/deprecated.R | 2 tibble-3.0.2/tibble/R/enframe.R | 10 tibble-3.0.2/tibble/R/glimpse.R | 8 tibble-3.0.2/tibble/R/legacy-compat.R |only tibble-3.0.2/tibble/R/lst.R | 4 tibble-3.0.2/tibble/R/names.R | 4 tibble-3.0.2/tibble/R/new.R | 2 tibble-3.0.2/tibble/R/options.R | 8 tibble-3.0.2/tibble/R/print.R | 14 tibble-3.0.2/tibble/R/rownames.R | 2 tibble-3.0.2/tibble/R/subsetting-matrix.R | 2 tibble-3.0.2/tibble/R/subsetting.R | 288 ++++++++------- tibble-3.0.2/tibble/R/tbl_sum.R | 8 tibble-3.0.2/tibble/R/tibble-package.R | 4 tibble-3.0.2/tibble/R/tibble.R | 16 tibble-3.0.2/tibble/R/tidy_names.R | 2 tibble-3.0.2/tibble/R/tribble.R | 30 + tibble-3.0.2/tibble/R/view.R | 2 tibble-3.0.2/tibble/build/vignette.rds |binary tibble-3.0.2/tibble/inst/doc/invariants.html | 113 ++--- tibble-3.0.2/tibble/inst/doc/types.html | 81 ++-- tibble-3.0.2/tibble/man/as_tibble.Rd | 10 tibble-3.0.2/tibble/man/deprecated.Rd | 2 tibble-3.0.2/tibble/man/enframe.Rd | 2 tibble-3.0.2/tibble/man/formatting.Rd | 10 tibble-3.0.2/tibble/man/frame_matrix.Rd | 2 tibble-3.0.2/tibble/man/glimpse.Rd | 8 tibble-3.0.2/tibble/man/is.tibble.Rd | 2 tibble-3.0.2/tibble/man/lst.Rd | 4 tibble-3.0.2/tibble/man/name-repair-superseded.Rd | 2 tibble-3.0.2/tibble/man/new_tibble.Rd | 2 tibble-3.0.2/tibble/man/print.tbl_df.Rd | 2 tibble-3.0.2/tibble/man/reexports.Rd | 5 tibble-3.0.2/tibble/man/subsetting.Rd | 4 tibble-3.0.2/tibble/man/tbl_sum.Rd | 4 tibble-3.0.2/tibble/man/tibble-package.Rd | 2 tibble-3.0.2/tibble/man/tibble.Rd | 6 tibble-3.0.2/tibble/man/tribble.Rd | 2 tibble-3.0.2/tibble/man/view.Rd | 2 tibble-3.0.2/tibble/tests/testthat/as_tibble.txt | 2 tibble-3.0.2/tibble/tests/testthat/helper-expectations.R | 2 tibble-3.0.2/tibble/tests/testthat/helper-my.R |only tibble-3.0.2/tibble/tests/testthat/subsetting.txt | 190 +++++---- tibble-3.0.2/tibble/tests/testthat/tbl_sum.txt | 6 tibble-3.0.2/tibble/tests/testthat/test-add.R | 9 tibble-3.0.2/tibble/tests/testthat/test-legacy-compat.R |only tibble-3.0.2/tibble/tests/testthat/test-subsetting.R | 45 ++ tibble-3.0.2/tibble/tests/testthat/test-tbl_sum.R | 2 tibble-3.0.2/tibble/tests/testthat/test-tribble.R | 22 + tibble-3.0.2/tibble/tests/testthat/test-zzz-tribble.R | 2 tibble-3.0.2/tibble/tests/testthat/tribble.txt | 3 59 files changed, 653 insertions(+), 471 deletions(-)
Title: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
Description: Efficient approximate leave-one-out cross-validation (LOO)
for Bayesian models fit using Markov chain Monte Carlo, as
described in Vehtari, Gelman, and Gabry (2017)
<doi:10.1007/s11222-016-9696-4>.
The approximation uses Pareto smoothed importance sampling (PSIS),
a new procedure for regularizing importance weights.
As a byproduct of the calculations, we also obtain approximate
standard errors for estimated predictive errors and for the comparison
of predictive errors between models. The package also provides methods
for using stacking and other model weighting techniques to average
Bayesian predictive distributions.
Author: Aki Vehtari [aut],
Jonah Gabry [cre, aut],
Mans Magnusson [aut],
Yuling Yao [aut],
Paul-Christian Bürkner [aut],
Topi Paananen [aut],
Andrew Gelman [aut],
Ben Goodrich [ctb],
Juho Piironen [ctb]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between loo versions 2.2.0 dated 2019-12-19 and 2.3.0 dated 2020-07-07
loo-2.2.0/loo/inst/doc/loo2-non-factorizable.R |only loo-2.2.0/loo/inst/doc/loo2-non-factorizable.Rmd |only loo-2.2.0/loo/inst/doc/loo2-non-factorizable.html |only loo-2.2.0/loo/vignettes/loo2-non-factorizable.Rmd |only loo-2.3.0/loo/DESCRIPTION | 16 loo-2.3.0/loo/MD5 | 140 +- loo-2.3.0/loo/NAMESPACE | 5 loo-2.3.0/loo/NEWS.md | 18 loo-2.3.0/loo/R/compare.R | 4 loo-2.3.0/loo/R/diagnostics.R | 62 loo-2.3.0/loo/R/importance_sampling.R | 27 loo-2.3.0/loo/R/loo-glossary.R | 18 loo-2.3.0/loo/R/loo-package.R | 17 loo-2.3.0/loo/R/loo.R | 54 loo-2.3.0/loo/R/loo_compare.R | 3 loo-2.3.0/loo/R/loo_model_weights.R | 3 loo-2.3.0/loo/R/loo_moment_matching.R |only loo-2.3.0/loo/R/loo_subsample.R | 12 loo-2.3.0/loo/R/psis.R | 22 loo-2.3.0/loo/R/sis.R | 25 loo-2.3.0/loo/R/split_moment_matching.R |only loo-2.3.0/loo/R/tis.R | 29 loo-2.3.0/loo/R/waic.R | 4 loo-2.3.0/loo/build/vignette.rds |binary loo-2.3.0/loo/inst/doc/loo2-example.R | 28 loo-2.3.0/loo/inst/doc/loo2-example.Rmd | 9 loo-2.3.0/loo/inst/doc/loo2-example.html | 197 +- loo-2.3.0/loo/inst/doc/loo2-large-data.R | 32 loo-2.3.0/loo/inst/doc/loo2-large-data.Rmd | 31 loo-2.3.0/loo/inst/doc/loo2-large-data.html | 327 ++-- loo-2.3.0/loo/inst/doc/loo2-lfo.R | 206 +-- loo-2.3.0/loo/inst/doc/loo2-lfo.Rmd | 307 ++-- loo-2.3.0/loo/inst/doc/loo2-lfo.html | 674 ++++------ loo-2.3.0/loo/inst/doc/loo2-moment-matching.R |only loo-2.3.0/loo/inst/doc/loo2-moment-matching.Rmd |only loo-2.3.0/loo/inst/doc/loo2-moment-matching.html |only loo-2.3.0/loo/inst/doc/loo2-non-factorized.R |only loo-2.3.0/loo/inst/doc/loo2-non-factorized.Rmd |only loo-2.3.0/loo/inst/doc/loo2-non-factorized.html |only loo-2.3.0/loo/inst/doc/loo2-weights.R | 42 loo-2.3.0/loo/inst/doc/loo2-weights.Rmd | 2 loo-2.3.0/loo/inst/doc/loo2-weights.html | 388 ++--- loo-2.3.0/loo/inst/doc/loo2-with-rstan.R | 10 loo-2.3.0/loo/inst/doc/loo2-with-rstan.Rmd | 9 loo-2.3.0/loo/inst/doc/loo2-with-rstan.html | 125 - loo-2.3.0/loo/man/compare.Rd | 8 loo-2.3.0/loo/man/loo-glossary.Rd | 22 loo-2.3.0/loo/man/loo-package.Rd | 19 loo-2.3.0/loo/man/loo.Rd | 37 loo-2.3.0/loo/man/loo_compare.Rd | 4 loo-2.3.0/loo/man/loo_model_weights.Rd | 7 loo-2.3.0/loo/man/loo_moment_match.Rd |only loo-2.3.0/loo/man/loo_moment_match_split.Rd |only loo-2.3.0/loo/man/pareto-k-diagnostic.Rd | 57 loo-2.3.0/loo/man/print.loo.Rd | 2 loo-2.3.0/loo/man/psis.Rd | 39 loo-2.3.0/loo/man/psis_approximate_posterior.Rd | 4 loo-2.3.0/loo/man/psislw.Rd | 4 loo-2.3.0/loo/man/sis.Rd | 18 loo-2.3.0/loo/man/tis.Rd | 20 loo-2.3.0/loo/man/waic.Rd | 8 loo-2.3.0/loo/man/weights.importance_sampling.Rd |only loo-2.3.0/loo/tests/testthat/reference-results/loo.rds |binary loo-2.3.0/loo/tests/testthat/reference-results/mcse_loo.rds |binary loo-2.3.0/loo/tests/testthat/reference-results/moment_match_loo_1.rds |only loo-2.3.0/loo/tests/testthat/reference-results/moment_match_loo_2.rds |only loo-2.3.0/loo/tests/testthat/reference-results/moment_match_loo_3.rds |only loo-2.3.0/loo/tests/testthat/reference-results/moment_match_loo_Stan_1.rds |only loo-2.3.0/loo/tests/testthat/reference-results/moment_match_split.rds |only loo-2.3.0/loo/tests/testthat/reference-results/moment_match_var_and_cov.rds |only loo-2.3.0/loo/tests/testthat/reference-results/psis.rds |binary loo-2.3.0/loo/tests/testthat/test_loo_and_waic.R | 6 loo-2.3.0/loo/tests/testthat/test_loo_moment_matching.R |only loo-2.3.0/loo/tests/testthat/test_loo_subsampling.R | 10 loo-2.3.0/loo/tests/testthat/test_print_plot.R | 9 loo-2.3.0/loo/tests/testthat/test_tisis.R | 8 loo-2.3.0/loo/vignettes/loo2-example.Rmd | 9 loo-2.3.0/loo/vignettes/loo2-large-data.Rmd | 31 loo-2.3.0/loo/vignettes/loo2-lfo.Rmd | 307 ++-- loo-2.3.0/loo/vignettes/loo2-moment-matching.Rmd |only loo-2.3.0/loo/vignettes/loo2-non-factorized.Rmd |only loo-2.3.0/loo/vignettes/loo2-weights.Rmd | 2 loo-2.3.0/loo/vignettes/loo2-with-rstan.Rmd | 9 83 files changed, 1770 insertions(+), 1716 deletions(-)
Title: Creates Log Files
Description: Contains functions to help create log files. The
package aims to overcome the difficulty of the base R sink() command. The
log_print() function will print to both the console and the file log,
without interfering in other write operations.
Author: David Bosak [aut, cre]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between logr versions 1.0.4 dated 2020-07-05 and 1.0.5 dated 2020-07-07
DESCRIPTION | 6 - MD5 | 12 +-- R/logr.R | 186 ++++++++++++++++++++++++++++++----------------------- README.md | 7 + inst/doc/logr.Rmd | 7 + inst/doc/logr.html | 7 + vignettes/logr.Rmd | 7 + 7 files changed, 138 insertions(+), 94 deletions(-)
Title: Estimating and Mapping Disaggregated Indicators
Description: Functions that support estimating, assessing and mapping regional
disaggregated indicators. So far, estimation methods comprise direct estimation,
the model-based unit-level approach Empirical Best Prediction (see "Small area
estimation of poverty indicators" by Molina and Rao (2010) <doi:10.1002/cjs.10051>),
the area-level model (see "Estimates of income for small places: An
application of James-Stein procedures to Census Data" by (Fay and Herriot 1979)
<doi:10.1080/01621459.1979.10482505>) and various extensions of it (adjusted variance estimation methods,
log and arcsin transformation, spatial, robust and measurement error models),
as well as their precision estimates. The assessment of the used model
is supported by a summary and diagnostic plots. For a suitable presentation of
estimates, map plots can be easily created. Furthermore, results can easily be
exported to excel. For a detailed description of the package and the methods used
see "The {R} Package {emdi} for Estimating and Mapping Regionally Disaggregated Indicators"
by Kreutzmann et al. (2019) <doi:10.18637/jss.v091.i07>.
Author: Sylvia Harmening [aut],
Ann-Kristin Kreutzmann [aut],
Soeren Pannier [aut, cre],
Natalia Rojas-Perilla [aut],
Nicola Salvati [aut],
Timo Schmid [aut],
Matthias Templ [aut],
Nikos Tzavidis [aut],
Nora Würz [aut]
Maintainer: Soeren Pannier <soeren.pannier@fu-berlin.de>
Diff between emdi versions 1.1.7 dated 2020-03-18 and 2.0.0 dated 2020-07-07
DESCRIPTION | 37 +- MD5 | 154 ++++++-- NAMESPACE | 39 ++ NEWS.md | 13 R/FH.R |only R/auxiliary_functions.R |only R/back_transformation.R |only R/benchmark.R |only R/check_compare_arguments.R | 29 - R/check_estimators_arguments.R | 31 + R/check_fh_arguments.R |only R/combine_data.R |only R/compare.R | 355 ++++++------------- R/compare_plot.R |only R/direct_estimation.R | 16 R/drop1.add1.fh.R |only R/eblup.R |only R/eblup_robust.R |only R/ebp.R | 17 R/emdi.R | 41 +- R/emdiObject.R | 90 ++-- R/estim_sigmau2.R |only R/estimators.emdi.R | 115 +++--- R/eusilcA_popAgg.R |only R/eusilcA_prox.R |only R/eusilcA_smpAgg.R |only R/framework_direct.R | 8 R/framework_ebp.R | 1 R/framework_fh.R |only R/map_plot.R | 34 - R/mse.R |only R/mse_emdi.R | 19 - R/plot.emdi.R | 514 ++++++++++++++++------------ R/point_emdi.R | 48 +- R/print.emdi.R | 99 +++-- R/spatialcor.R |only R/step.R |only R/summary.emdi.R | 292 +++++++++++---- R/transformation_functions.R | 4 R/variable_selection.R |only R/write.excel.emdi.R | 179 ++++++++- R/write.ods.emdi.R | 82 +++- build/vignette.rds |binary data/eusilcA_popAgg.rda |only data/eusilcA_prox.rda |only data/eusilcA_smpAgg.rda |only inst/COPYRIGHTS | 5 inst/doc/vignette_fh.pdf |only inst/doc/vignette_fh.pdf.asis |only man/benchmark.Rd |only man/combine_data.Rd |only man/compare.Rd |only man/compare.fh.Rd |only man/compare_plot.Rd | 114 ++---- man/compare_plot.emdi.Rd |only man/data_transformation.Rd | 4 man/direct.Rd | 16 man/ebp.Rd | 13 man/emdi.Rd | 41 +- man/emdiObject.Rd | 88 ++-- man/estimators.Rd | 15 man/estimators.emdi.Rd | 35 + man/eusilcA_popAgg.Rd |only man/eusilcA_prox.Rd |only man/eusilcA_smpAgg.Rd |only man/fh.Rd |only man/head.estimators.emdi.Rd | 16 man/map_plot.Rd | 25 - man/plot.emdi.Rd | 148 ++++---- man/print.compare.fh.Rd |only man/print.emdi.Rd | 6 man/print.step.Rd |only man/print.summary.emdi.Rd | 2 man/spatialcor.tests.Rd |only man/step.Rd |only man/step.fh.Rd |only man/subset.estimators.emdi.Rd | 8 man/summary.emdi.Rd | 91 ++-- man/tail.estimators.emdi.Rd | 22 - man/write.excel.Rd | 21 - tests/testthat/FH |only tests/testthat/test_fh_std_spatial_robust.R |only tests/testthat/test_fh_transformation.R |only tests/testthat/test_fh_variance.R |only vignettes/vignette_fh.pdf.asis |only 85 files changed, 1704 insertions(+), 1183 deletions(-)
Title: Tools for Analysing Forensic Genetic DNA Data
Description: Computationally efficient tools for comparing all pairs of profiles
in a DNA database. The expectation and covariance of the summary statistic
is implemented for fast computing. Routines for estimating proportions of
close related individuals are available. The use of wildcards (also called F-
designation) is implemented. Dedicated functions ease plotting the results.
See Tvedebrink et al. (2012) <doi:10.1016/j.fsigen.2011.08.001>.
Compute the distribution of the numbers of alleles in DNA mixtures.
See Tvedebrink (2013) <doi:10.1016/j.fsigss.2013.10.142>.
Author: Torben Tvedebrink [aut],
James Curran [aut],
Mikkel Meyer Andersen [aut, cre]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between DNAtools versions 0.2-2 dated 2020-03-03 and 0.2-3 dated 2020-07-07
DESCRIPTION | 13 ++- MD5 | 16 ++-- NEWS | 3 build/vignette.rds |binary inst/doc/db_vignette.html | 76 +++++++++++----------- inst/doc/dna_vignette.html | 10 +-- inst/doc/noa_vignette.html | 140 +++++++++++++++++++++--------------------- man/dbExample.Rd | 6 + tests/testthat/test-compare.R | 9 +- 9 files changed, 142 insertions(+), 131 deletions(-)
Title: Tools for Creating Automated Courses
Description: Leverages the 'ari' package and other tools to create automated
courses from slides and a script. Also, uploads these to
'YouTube' and other services using 'tuber' package.
Author: John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between ariExtra versions 0.2.7 dated 2020-07-03 and 0.2.9 dated 2020-07-07
DESCRIPTION | 6 +-- MD5 | 32 ++++++++++------- NEWS.md | 8 ++++ R/gs_ari.R | 59 +++++++++++++++++++++++++++++---- R/make_ari_document.R | 1 R/rmd_to_ari.R | 58 +++++++++++++++++++++++++------- README.md | 8 +--- inst/doc/making_videos.R | 15 +++++++- inst/doc/making_videos.Rmd | 15 +++++++- inst/doc/making_videos.html | 39 +++++++++++++-------- inst/extdata/lucy-demo-noggplot2.Rmd |only inst/extdata/lucy-demo-noggplot2.html |only inst/extdata/lucy-demo-noggplot2_files |only man/gs_to_ari.Rd | 31 +++++++++++++---- man/rmd_to_ari.Rd | 34 ++++++++++++------- tests/testthat/test-rmd_to_ari.R | 23 ++++++++++-- vignettes/making_videos.Rmd | 15 +++++++- 17 files changed, 263 insertions(+), 81 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear univariate or multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017) <doi:10.18637/jss.v078.i02>).
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 1.9.1 dated 2020-06-03 and 1.9.2 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS | 7 +++++++ R/Jointlcmm.R | 7 ++++--- R/lcmm-package.R | 4 ++-- R/mpjlcmm.R | 5 ++++- R/predYmedian.R | 24 +++++++++++++++++------- build/partial.rdb |binary man/Jointlcmm.Rd | 12 ++++++------ man/lcmm-package.Rd | 4 ++-- src/mpjhet.f90 | 11 ++++++++--- 11 files changed, 64 insertions(+), 38 deletions(-)
Title: Phylogenetic Tree Search Using Custom Optimality Criteria
Description: Searches for phylogenetic trees that are optimal using a
user-defined criterion.
Handles inapplicable data using the algorithm of
Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.
Implements Profile Parsimony (Faith and Trueman, 2001)
<doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969)
<doi:10.2307/2412182>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Martin Brazeau [cph] (<https://orcid.org/0000-0002-0650-1282>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeSearch versions 0.4.1 dated 2020-06-09 and 0.4.2 dated 2020-07-07
DESCRIPTION | 8 +- MD5 | 18 ++-- NEWS.md | 4 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/getting-started.html | 20 ++++- inst/doc/inapplicable.html | 143 ++++++++++++++++++++------------------- inst/doc/profile-scores.html | 20 ++++- inst/doc/profile.html | 26 +++++-- tests/testthat/test-TreeSearch.R | 19 +++-- 10 files changed, 159 insertions(+), 99 deletions(-)
Title: Weighting for Covariate Balance in Observational Studies
Description: Generates weights to form equivalent groups in observational studies with point or longitudinal treatments by easing and extending the functionality of the R packages 'twang' for generalized boosted modeling (McCaffrey, Ridgeway & Morral, 2004) <doi:10.1037/1082-989X.9.4.403>, 'CBPS' for covariate balancing propensity score weighting (Imai & Ratkovic, 2014) <doi:10.1111/rssb.12027>, 'ebal' for entropy balancing (Hainmueller, 2012) <doi:10.1093/pan/mpr025>, 'optweight' for optimization-based weights (Zubizarreta, 2015) <doi:10.1080/01621459.2015.1023805>, 'ATE' for empirical balancing calibration weighting (Chan, Yam, & Zhang, 2016) <doi:10.1111/rssb.12129>, and 'SuperLearner' for stacked machine learning-based propensity scores (Pirracchio, Petersen, & van der Laan, 2015) <doi:10.1093/aje/kwu253>. Also allows for assessment of weights and checking of covariate balance by interfacing directly with 'cobalt'.
Author: Noah Greifer [aut, cre] (<https://orcid.org/0000-0003-3067-7154>)
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between WeightIt versions 0.9.0 dated 2020-02-11 and 0.10.0 dated 2020-07-07
DESCRIPTION | 19 MD5 | 73 +-- NAMESPACE | 7 NEWS.md | 24 + R/SHARED.R | 356 +++++++++++---- R/balance.criteria.R |only R/functions_for_processing.R | 660 ++++++++++++++++++++-------- R/sbps.R | 2 R/trim.R | 116 ++--- R/utilities.R | 73 +-- R/weightit.R | 44 + R/weightit.fit.R | 85 ++- R/weightit2method.R | 829 ++++++++++++++++++++---------------- R/weightitMSM.R | 63 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/WeightIt_A0_basic_use.R | 2 inst/doc/WeightIt_A0_basic_use.Rmd | 2 inst/doc/WeightIt_A0_basic_use.html | 458 ++++++------------- man/ESS.Rd | 2 man/get_w_from_ps.Rd | 14 man/make_full_rank.Rd | 5 man/method-cbps.Rd | 5 man/method-ebal.Rd | 3 man/method-energy.Rd |only man/method-gbm.Rd | 26 - man/method-npcbps.Rd | 3 man/method-optweight.Rd | 17 man/method-ps.Rd | 20 man/method-super.Rd | 14 man/method-twang.Rd | 2 man/ps.cont.Rd | 7 man/sbps.Rd | 7 man/stop.method.Rd |only man/summary.weightit.Rd | 1 man/trim.Rd | 20 man/weightit.Rd | 34 - man/weightitMSM.Rd | 4 vignettes/WeightIt_A0_basic_use.Rmd | 2 39 files changed, 1764 insertions(+), 1235 deletions(-)
Title: Create, Modify and Analyse Phylogenetic Trees
Description: Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
rooting of trees and extraction of subtrees;
calculation and depiction of node support;
calculation of ancestor-descendant relationships;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <http://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>),
Klaus Schliep [cph] (<https://orcid.org/0000-0003-2941-0161>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeTools versions 1.0.0 dated 2020-06-08 and 1.1.0 dated 2020-07-07
DESCRIPTION | 12 - MD5 | 97 ++++---- NAMESPACE | 29 ++ NEWS.md | 23 + R/RcppExports.R | 4 R/Splits.R | 12 - R/TreeNumber.R | 24 +- R/helper_functions.R | 48 +++- R/tree_generation.R | 48 +++- R/tree_properties.R | 43 +++ R/tree_rearrangement.R | 138 +++++++++++ build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/filesystem-navigation.html | 20 + inst/doc/load-data.html | 20 + inst/doc/load-trees.Rmd | 2 inst/doc/load-trees.html | 28 +- man/AddTip.Rd | 1 man/CollapseNode.Rd | 1 man/ConsensusWithout.Rd | 2 man/DropTip.Rd | 1 man/EnforceOutgroup.Rd | 1 man/GenerateTree.Rd | 135 +++++------ man/LeafLabelInterchange.Rd | 1 man/MakeTreeBinary.Rd |only man/NSplits.Rd | 2 man/NTip.Rd | 2 man/Renumber.Rd | 1 man/RenumberTips.Rd | 1 man/Reorder.Rd | 1 man/RootTree.Rd | 8 man/SingleTaxonTree.Rd | 1 man/SortTree.Rd | 1 man/SplitsInBinaryTree.Rd |only man/Subtree.Rd | 1 man/TipLabels.Rd | 2 man/TipsInSplits.Rd | 1 man/TreeIsRooted.Rd | 1 man/TreeNumber.Rd | 322 +++++++++++++-------------- man/as.Splits.Rd | 1 man/dot-RandomParent.Rd |only man/match.Rd | 6 man/sapply64.Rd |only src/RcppExports.cpp | 18 + src/TreeTools-init.c | 2 src/int_to_tree.cpp | 43 +++ tests/testthat/test-tree_generation-random.R |only tests/testthat/test-tree_generation.R | 2 tests/testthat/test-tree_properties.R | 6 tests/testthat/test-tree_rearrange.R | 54 ++++ vignettes/load-trees.Rmd | 2 52 files changed, 847 insertions(+), 322 deletions(-)
Title: An Implementation of Isolation Forest
Description: Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detection (Liu, Ting and Zhou <doi:10.1145/2133360.2133363>).
Author: Komala Sheshachala Srikanth [aut, cre]
Maintainer: Komala Sheshachala Srikanth <sri.teach@gmail.com>
Diff between solitude versions 1.0.0 dated 2020-07-05 and 1.0.1 dated 2020-07-07
DESCRIPTION | 10 +- MD5 | 10 +- NEWS.md | 13 ++- R/isolationForest_r6.R | 157 +++++++++++++++++++++++++------------------ README.md | 176 +++++++++++++++++++++++++------------------------ man/isolationForest.Rd | 46 ++++++------ 6 files changed, 221 insertions(+), 191 deletions(-)
More information about predReliability at CRAN
Permanent link
Title: Define and Work with Parameter Spaces for Complex Algorithms
Description: Define parameter spaces, constraints and
dependencies for arbitrary algorithms, to program on such spaces. Also
includes statistical designs and random samplers. Objects are
implemented as 'R6' classes.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Jakob Richter [aut] (<https://orcid.org/0000-0003-4481-5554>),
Xudong Sun [aut] (<https://orcid.org/0000-0003-3269-2307>),
Martin Binder [aut],
Marc Becker [ctb] (<https://orcid.org/0000-0002-8115-0400>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between paradox versions 0.2.0 dated 2020-04-15 and 0.3.0 dated 2020-07-07
DESCRIPTION | 20 + MD5 | 98 +++---- NEWS.md | 7 R/Condition.R | 51 ++- R/Design.R | 63 ++-- R/Param.R | 138 ++++++---- R/ParamDbl.R | 47 +-- R/ParamFct.R | 47 +-- R/ParamInt.R | 44 +-- R/ParamLgl.R | 42 --- R/ParamSet.R | 296 ++++++++++++++--------- R/ParamSetCollection.R | 42 +-- R/ParamUty.R | 54 +--- R/Sampler.R | 47 +-- R/Sampler1D.R | 157 +++--------- R/SamplerHierarchical.R | 29 -- R/SamplerJointIndep.R | 27 -- R/SamplerUnif.R | 14 - R/asserts.R | 3 R/generate_design_grid.R | 6 R/generate_design_lhs.R | 6 R/generate_design_random.R | 4 R/helper.R |only README.md | 8 man/Condition.Rd | 140 +++++++++- man/Design.Rd | 117 +++++++-- man/Param.Rd | 308 +++++++++++++++++++---- man/ParamDbl.Rd | 169 ++++++++++--- man/ParamFct.Rd | 162 +++++++++--- man/ParamInt.Rd | 168 ++++++++++--- man/ParamLgl.Rd | 150 ++++++++--- man/ParamSet.Rd | 527 +++++++++++++++++++++++++++++++++-------- man/ParamSetCollection.Rd | 138 +++++++++- man/ParamUty.Rd | 161 +++++++++--- man/Sampler.Rd | 132 ++++++++-- man/Sampler1D.Rd | 94 +++++-- man/Sampler1DCateg.Rd | 95 +++++-- man/Sampler1DNormal.Rd | 107 +++++--- man/Sampler1DRfun.Rd | 105 +++++--- man/Sampler1DUnif.Rd | 77 ++++- man/SamplerHierarchical.Rd | 96 +++++-- man/SamplerJointIndep.Rd | 90 ++++--- man/SamplerUnif.Rd | 74 ++++- man/assert_param.Rd | 2 man/generate_design_grid.Rd | 6 man/generate_design_lhs.Rd | 6 man/generate_design_random.Rd | 4 man/paradox-package.Rd | 5 man/transpose.Rd |only tests/testthat/test_ParamSet.R | 31 ++ tests/testthat/test_sampler.R | 6 51 files changed, 2924 insertions(+), 1296 deletions(-)
Title: Model-Based Clustering of Network Data
Description: Clustering unilayer and multilayer network data by means of finite mixtures is the main utility of 'netClust'.
Author: Shuchismita Sarkar [aut, cre],
Volodymyr Melnykov [aut]
Maintainer: Shuchismita Sarkar <ssarkar@bgsu.edu>
Diff between netClust versions 1.0 dated 2020-07-06 and 1.0.1 dated 2020-07-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- build/partial.rdb |binary src/netClust.cpp | 38 ++++++++++++++++++++++++-------------- 4 files changed, 30 insertions(+), 20 deletions(-)
More information about DetLifeInsurance at CRAN
Permanent link
Title: 'Asio' C++ Header Files
Description: 'Asio' is a cross-platform C++ library for network and low-level
I/O programming that provides developers with a consistent asynchronous model
using a modern C++ approach. It is also included in Boost but requires linking
when used with Boost. Standalone it can be used header-only (provided a recent
compiler). 'Asio' is written and maintained by Christopher M. Kohlhoff, and
released under the 'Boost Software License', Version 1.0.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between AsioHeaders versions 1.12.2-1 dated 2020-03-11 and 1.16.1-1 dated 2020-07-07
AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/datagram_socket_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/deadline_timer_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/experimental |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/experimental.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/handler_type.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/ip/resolver_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/posix/stream_descriptor_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/raw_socket_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/seq_packet_socket_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/serial_port_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/signal_set_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/socket_acceptor_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/stream_socket_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/waitable_timer_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/windows/basic_handle.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/windows/object_handle_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/windows/random_access_handle_service.hpp |only AsioHeaders-1.12.2-1/AsioHeaders/inst/include/asio/windows/stream_handle_service.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/ChangeLog | 20 AsioHeaders-1.16.1-1/AsioHeaders/DESCRIPTION | 8 AsioHeaders-1.16.1-1/AsioHeaders/MD5 | 969 ++-- AsioHeaders-1.16.1-1/AsioHeaders/NAMESPACE | 6 AsioHeaders-1.16.1-1/AsioHeaders/README.md | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/NEWS.Rd | 7 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio.hpp | 29 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/associated_allocator.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/associated_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/async_result.hpp | 498 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/awaitable.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_datagram_socket.hpp | 690 +-- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_deadline_timer.hpp | 295 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_io_object.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_raw_socket.hpp | 692 +-- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_seq_packet_socket.hpp | 426 + AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_serial_port.hpp | 413 + AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_signal_set.hpp | 309 + AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_socket.hpp | 591 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_socket_acceptor.hpp | 1437 ++++-- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_socket_iostream.hpp | 65 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_socket_streambuf.hpp | 50 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_stream_socket.hpp | 524 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_streambuf.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_streambuf_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/basic_waitable_timer.hpp | 302 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/bind_executor.hpp | 33 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffer.hpp | 495 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_read_stream.hpp | 50 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_read_stream_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_stream.hpp | 61 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_stream_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_write_stream.hpp | 50 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffered_write_stream_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/buffers_iterator.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/co_spawn.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/completion_condition.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/compose.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/connect.hpp | 220 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/coroutine.hpp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/deadline_timer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/defer.hpp | 38 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detached.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/array.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/array_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/assert.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/atomic_count.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/base_from_completion_cond.hpp | 7 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/bind_handler.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/buffer_resize_guard.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/buffer_sequence_adapter.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/buffered_stream_storage.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/call_stack.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/chrono.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/chrono_time_traits.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/completion_handler.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/concurrency_hint.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/conditionally_enabled_event.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/conditionally_enabled_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/config.hpp | 239 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/consuming_buffers.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/cstddef.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/cstdint.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/date_time_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/deadline_timer_service.hpp | 22 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/dependent_type.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/descriptor_ops.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/descriptor_read_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/descriptor_write_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/dev_poll_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/epoll_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/event.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/eventfd_select_interrupter.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/executor_function.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/executor_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/fd_set_adapter.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/functional.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/future.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/gcc_arm_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/gcc_hppa_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/gcc_sync_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/gcc_x86_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/global.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_alloc_helpers.hpp | 19 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_cont_helpers.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_invoke_helpers.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_tracking.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_type_requirements.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/handler_work.hpp | 34 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/hash_map.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/buffer_sequence_adapter.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/descriptor_ops.ipp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/dev_poll_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/dev_poll_reactor.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/epoll_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/epoll_reactor.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/eventfd_select_interrupter.ipp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/handler_tracking.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/kqueue_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/kqueue_reactor.ipp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/null_event.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/pipe_select_interrupter.ipp | 17 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/posix_event.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/posix_mutex.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/posix_thread.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/posix_tss_ptr.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/reactive_descriptor_service.ipp | 9 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/reactive_serial_port_service.ipp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/reactive_socket_service_base.ipp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/resolver_service_base.ipp | 70 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/scheduler.ipp | 54 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/select_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/select_reactor.ipp | 11 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/service_registry.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/service_registry.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/signal_set_service.ipp | 42 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/socket_ops.ipp | 22 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/socket_select_interrupter.ipp | 21 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/strand_executor_service.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/strand_executor_service.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/strand_service.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/strand_service.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/throw_error.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/timer_queue_ptime.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/timer_queue_set.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_event.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_handle_service.ipp | 12 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_io_context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_io_context.ipp | 44 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_serial_port_service.ipp | 23 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_iocp_socket_service_base.ipp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_mutex.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_object_handle_service.ipp | 35 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_static_mutex.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_thread.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/win_tss_ptr.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/winrt_ssocket_service_base.ipp | 39 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/winrt_timer_scheduler.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/winrt_timer_scheduler.ipp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/impl/winsock_init.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/io_control.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/io_object_executor.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/io_object_impl.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/is_buffer_sequence.hpp | 81 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/is_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/keyword_tss_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/kqueue_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/local_free_on_block_exit.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/macos_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/memory.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/non_const_lvalue.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/noncopyable.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_event.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_global.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_signal_blocker.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_socket_service.hpp | 115 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_static_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/null_tss_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/object_pool.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/old_win_sdk_compat.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/op_queue.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/operation.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/pipe_select_interrupter.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/pop_options.hpp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_event.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_fd_set_adapter.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_global.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_signal_blocker.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_static_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/posix_tss_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/push_options.hpp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_descriptor_service.hpp | 55 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_null_buffers_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_serial_port_service.hpp | 24 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_accept_op.hpp | 51 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_connect_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_recv_op.hpp | 18 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_recvfrom_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_recvmsg_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_send_op.hpp | 18 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_sendto_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_service.hpp | 117 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_socket_service_base.hpp | 85 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactive_wait_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactor_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactor_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/reactor_op_queue.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/recycling_allocator.hpp | 30 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/regex_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/resolve_endpoint_op.hpp | 38 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/resolve_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/resolve_query_op.hpp | 34 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/resolver_service.hpp | 36 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/resolver_service_base.hpp | 41 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/scheduler.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/scheduler_operation.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/scheduler_thread_info.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/scoped_lock.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/scoped_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/select_interrupter.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/select_reactor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/service_registry.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/signal_blocker.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/signal_handler.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/signal_init.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/signal_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/signal_set_service.hpp | 36 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/socket_holder.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/socket_ops.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/socket_option.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/socket_select_interrupter.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/socket_types.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/solaris_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/static_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_event.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_global.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_static_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/std_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/strand_executor_service.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/strand_service.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/string_view.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/thread_context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/thread_group.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/thread_info_base.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/throw_error.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/throw_exception.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_queue.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_queue_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_queue_ptime.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_queue_set.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_scheduler.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/timer_scheduler_fwd.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/tss_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/type_traits.hpp | 9 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/variadic_templates.hpp | 34 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/wait_handler.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/wait_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_event.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_fd_set_adapter.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_fenced_block.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_global.hpp | 13 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_handle_read_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_handle_service.hpp | 72 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_handle_write_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_io_context.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_null_buffers_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_operation.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_overlapped_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_overlapped_ptr.hpp | 42 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_serial_port_service.hpp | 24 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_accept_op.hpp | 43 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_connect_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_recv_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_recvfrom_op.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_recvmsg_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_send_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_service.hpp | 134 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_socket_service_base.hpp | 103 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_thread_info.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_iocp_wait_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_object_handle_service.hpp | 35 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_static_mutex.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/win_tss_ptr.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winapp_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/wince_thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_async_manager.hpp | 39 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_async_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_resolve_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_resolver_service.hpp | 54 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_socket_connect_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_socket_recv_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_socket_send_op.hpp | 15 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_ssocket_service.hpp | 33 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_ssocket_service_base.hpp | 69 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_timer_scheduler.hpp | 26 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winrt_utils.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/winsock_init.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/work_dispatcher.hpp | 7 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/detail/wrapped_handler.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/dispatch.hpp | 36 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/error.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/error_code.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/execution_context.hpp | 5 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/executor_work_guard.hpp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/basic_endpoint.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/datagram_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/detail/endpoint.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/detail/impl/endpoint.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/raw_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/seq_packet_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/generic/stream_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/handler_alloc_hook.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/handler_continuation_hook.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/handler_invoke_hook.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/high_resolution_timer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/awaitable.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/buffered_read_stream.hpp | 158 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/buffered_write_stream.hpp | 148 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/co_spawn.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/compose.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/connect.hpp | 486 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/defer.hpp | 90 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/detached.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/dispatch.hpp | 91 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/error.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/error_code.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/execution_context.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/execution_context.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/executor.hpp | 31 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/executor.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/handler_alloc_hook.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/io_context.hpp | 134 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/io_context.ipp | 7 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/post.hpp | 90 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/read.hpp | 662 ++ AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/read_at.hpp | 211 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/read_until.hpp | 2258 ++++++++-- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/redirect_error.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/serial_port_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/serial_port_base.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/spawn.hpp | 47 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/src.cpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/src.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/system_context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/system_context.ipp | 11 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/system_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/thread_pool.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/thread_pool.ipp | 21 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/use_awaitable.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/use_future.hpp | 52 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/write.hpp | 613 ++ AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/impl/write_at.hpp | 212 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/io_context.hpp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/io_context_strand.hpp | 96 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/io_service.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/io_service_strand.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address.hpp | 62 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v4.hpp | 58 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v4_iterator.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v4_range.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v6.hpp | 77 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v6_iterator.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/address_v6_range.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/bad_address_cast.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_endpoint.hpp | 47 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_resolver.hpp | 394 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_resolver_entry.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_resolver_iterator.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_resolver_query.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/basic_resolver_results.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/detail/endpoint.hpp | 40 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/detail/impl/endpoint.ipp | 20 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/detail/socket_option.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/host_name.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/icmp.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address.ipp | 41 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address_v4.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address_v4.ipp | 22 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address_v6.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/address_v6.ipp | 52 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/basic_endpoint.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/host_name.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/network_v4.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/network_v4.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/network_v6.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/impl/network_v6.ipp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/multicast.hpp | 16 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/network_v4.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/network_v6.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/resolver_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/resolver_query_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/tcp.hpp | 18 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/udp.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/unicast.hpp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ip/v6_only.hpp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/is_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/is_read_buffered.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/is_write_buffered.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/basic_endpoint.hpp | 12 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/connect_pair.hpp | 33 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/datagram_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/detail/endpoint.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/detail/impl/endpoint.ipp | 9 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/local/stream_protocol.hpp | 8 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/packaged_task.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/placeholders.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/posix/basic_descriptor.hpp | 263 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/posix/basic_stream_descriptor.hpp | 252 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/posix/descriptor.hpp | 617 -- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/posix/descriptor_base.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/posix/stream_descriptor.hpp | 329 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/post.hpp | 34 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/read.hpp | 457 +- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/read_at.hpp | 81 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/read_until.hpp | 1209 ++++- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/redirect_error.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/serial_port.hpp | 739 --- AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/serial_port_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/signal_set.hpp | 425 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/socket_base.hpp | 52 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/spawn.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl.hpp | 3 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/context.hpp | 5 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/context_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/buffered_handshake_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/engine.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/handshake_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/impl/engine.ipp | 28 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/impl/openssl_init.ipp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/io.hpp | 17 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/openssl_init.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/openssl_types.hpp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/password_callback.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/read_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/shutdown_op.hpp | 14 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/stream_core.hpp | 9 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/verify_callback.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/detail/write_op.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/error.hpp | 28 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/host_name_verification.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/context.ipp | 54 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/error.ipp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/host_name_verification.ipp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/rfc2818_verification.ipp | 6 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/impl/src.hpp | 3 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/rfc2818_verification.hpp | 10 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/stream.hpp | 319 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/stream_base.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/verify_context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ssl/verify_mode.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/steady_timer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/strand.hpp | 40 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/streambuf.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/system_context.hpp | 5 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/system_error.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/system_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/system_timer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/this_coro.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/thread.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/thread_pool.hpp | 5 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/time_traits.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/buffer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/executor.hpp | 3 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/internet.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/io_context.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/net.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/netfwd.hpp | 74 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/socket.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/ts/timer.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/unyield.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/use_awaitable.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/use_future.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/uses_executor.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/version.hpp | 4 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/wait_traits.hpp | 2 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/basic_object_handle.hpp | 337 + AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/basic_overlapped_handle.hpp |only AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/basic_random_access_handle.hpp | 258 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/basic_stream_handle.hpp | 261 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/object_handle.hpp | 349 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/overlapped_handle.hpp | 300 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/overlapped_ptr.hpp | 45 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/random_access_handle.hpp | 347 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/windows/stream_handle.hpp | 331 - AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/write.hpp | 428 + AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/write_at.hpp | 81 AsioHeaders-1.16.1-1/AsioHeaders/inst/include/asio/yield.hpp | 2 502 files changed, 15541 insertions(+), 10399 deletions(-)
Title: Zipf Extended Distributions
Description: Implementation of four extensions of the Zipf distribution: the Marshall-Olkin
Extended Zipf (MOEZipf) Pérez-Casany, M., & Casellas, A. (2013) <arXiv:1304.4540>, the Zipf-Poisson Extreme (Zipf-PE), the
Zipf-Poisson Stopped Sum (Zipf-PSS) and the Zipf-Polylog distributions.
In log-log scale, the two first extensions allow for top-concavity
and top-convexity while the third one only allows for top-concavity.
All the extensions maintain the linearity associated with the Zipf model in the tail.
Author: Ariel Duarte-López [aut, cre] (<https://orcid.org/0000-0002-7432-0344>),
Marta Pérez-Casany [aut] (<https://orcid.org/0000-0003-3675-6902>)
Maintainer: Ariel Duarte-López <aduarte@ac.upc.edu>
Diff between zipfextR versions 1.0.1 dated 2019-09-18 and 1.0.2 dated 2020-07-07
DESCRIPTION | 6 +- MD5 | 16 ++++- NAMESPACE | 6 ++ R/zipfPolylog.R | 125 ++++++++++++++++++++++++++++++++++++++++++++-- R/zipfpe.R | 5 + R/zipfpolylogMean.R |only R/zipfpolylogMoments.R |only R/zipfpoylogVariance.R |only man/zipfPolylog.Rd | 24 +++++++- man/zipfpolylogMean.Rd |only man/zipfpolylogMoments.Rd |only man/zipfpoylogVariance.Rd |only 12 files changed, 168 insertions(+), 14 deletions(-)
Title: Simple Visualisation with 'ggplot2' and 'leaflet' Wrappers
Description: Provides 'ggplot2' and 'leaflet' wrapper functions designed to simplify the creation of high quality graph and map visualisations. These functions only require inputs of data, variables and titles to provide beautiful interactive or image visualisations. However they allow for more flexibility if required. The intent is that high quality well-designed graphs and maps can be made more consistently with less effort, code and expertise than would otherwise be required.
Author: David Hodge [aut, cre] (<https://orcid.org/0000-0002-3868-7501>),
Statistics New Zealand [cph]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between simplevis versions 1.4.0 dated 2020-06-22 and 1.5.0 dated 2020-07-07
DESCRIPTION | 10 - MD5 | 120 ++++++++---- NEWS.md | 75 ++++---- R/ggplot_box_fun.R | 83 +++++--- R/ggplot_hbar_fun.R | 236 +++++++++++++++++++------ R/ggplot_line_fun.R | 141 ++++++++++++--- R/ggplot_scatter_fun.R | 135 +++++++++++++- R/ggplot_vbar_fun.R | 300 +++++++++++++++++++++++--------- R/leaflet_sf_fun.R | 13 - R/leaflet_stars_fun.R | 2 inst/doc/simplevis.html | 4 inst/shiny/template1/data/data.RDS |only inst/shiny/template1/data/data.zip |only inst/shiny/template1/data/template1.zip |binary inst/shiny/template1/get_app_data.R |only inst/shiny/template1/global.R | 10 - inst/shiny/template1/make_app_vis.R | 24 +- inst/shiny/template1/server.R | 74 +++---- inst/shiny/template1/ui.R | 7 inst/shiny/template1/www/about.Rmd | 4 inst/shiny/template2/data/data.zip |only inst/shiny/template2/data/data1.RDS |only inst/shiny/template2/data/data2.RDS |only inst/shiny/template2/data/template2.zip |binary inst/shiny/template2/get_app_data.R |only inst/shiny/template2/global.R | 17 - inst/shiny/template2/make_app_vis.R | 44 ++-- inst/shiny/template2/server.R | 85 ++++----- inst/shiny/template2/ui.R | 14 - inst/shiny/template2/www/about.Rmd | 4 inst/shiny/zip |only man/ggplot_box.Rd | 7 man/ggplot_box_facet.Rd | 7 man/ggplot_hbar.Rd | 23 +- man/ggplot_hbar_col.Rd | 13 - man/ggplot_hbar_col_facet.Rd | 13 - man/ggplot_hbar_facet.Rd | 23 +- man/ggplot_line.Rd | 17 + man/ggplot_line_col.Rd | 26 +- man/ggplot_line_col_facet.Rd | 15 + man/ggplot_line_facet.Rd | 15 + man/ggplot_scatter.Rd | 9 man/ggplot_scatter_col.Rd | 9 man/ggplot_scatter_col_facet.Rd | 9 man/ggplot_scatter_facet.Rd | 9 man/ggplot_vbar.Rd | 19 +- man/ggplot_vbar_col.Rd | 24 +- man/ggplot_vbar_col_facet.Rd | 25 +- man/ggplot_vbar_facet.Rd | 21 +- man/leaflet_sf.Rd | 2 man/leaflet_sf_col.Rd | 13 - man/leaflet_stars_col.Rd | 2 52 files changed, 1158 insertions(+), 545 deletions(-)
Title: Results for Forest Inventories
Description: The functions return sampling parameters for forest inventories with tables and graphics. Methods used in the
package refers to Pellico e Brena (1997) <https://bit.ly/2BDbHJI>.
Author: Igor Cobelo Ferreira
Maintainer: Igor Cobelo Ferreira <cobelo.igor@gmail.com>
Diff between florestal versions 0.1.0 dated 2020-07-06 and 0.1.1 dated 2020-07-07
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/ace.R | 14 +++++++------- man/ace.Rd | 4 ++-- man/acs.Rd | 4 ++-- man/bit.Rd | 4 ++-- man/fito.Rd | 4 ++-- 7 files changed, 24 insertions(+), 24 deletions(-)
Title: Solvers for Boundary Value Problems of Differential Equations
Description: Functions that solve boundary value problems ('BVP') of systems of ordinary
differential equations ('ODE') and differential algebraic equations ('DAE').
The functions provide an interface to the FORTRAN functions
'twpbvpC', 'colnew/colsys', and an R-implementation of the shooting method.
'Mazzia, F., J.R. Cash and K. Soetaert, 2014. <DOI:10.7494/OpMath.2014.34.2.387>.
Author: Karline Soetaert [aut, cre] (<https://orcid.org/0000-0003-4603-7100>),
Jeff Cash [aut],
Francesca Mazzia [aut],
Uri M. Ascher [ctb] (files colsysR.f, colnewR.f, coldaeR.f),
G. Bader [ctb] (file colnewR.f),
J. Christiansen [ctb] (file colsysR.f),
Robert R. Russell [ctb] (file colsysR.f)
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between bvpSolve versions 1.4 dated 2020-05-26 and 1.4.1 dated 2020-07-07
DESCRIPTION | 23 +++++----- MD5 | 14 +++--- inst/doc/bvpSolve.pdf |binary inst/doc/bvpTests.pdf |binary inst/doc/opuscula_math_3424.pdf |binary src/R_init_bvpSolve.c | 4 - src/bvpSolve.h | 89 +++++++++++++++++++++------------------- src/bvpSolve_utils.c | 2 8 files changed, 70 insertions(+), 62 deletions(-)
Title: Visual Regression Testing and Graphical Diffing
Description: An extension to the 'testthat' package that makes it easy
to add graphical unit tests. It provides a Shiny application to
manage the test cases.
Author: Lionel Henry [cre, aut],
RStudio [cph],
Carl Sutherland [aut] (jg-imagediff library),
Humble Software [cph] (jg-imagediff library),
David Hong [aut] (TwoFace library),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/htmlwidgets/lib/jquery-authors.txt),
T Jake Luciani [aut] (svglite),
Matthieu Decorde [aut] (svglite),
Vaudor Lise [aut] (svglite),
Tony Plate [ctb] (svglite: Early line dashing code),
David Gohel [ctb] (svglite: Line dashing code and raster code),
Yixuan Qiu [ctb] (svglite: Improved styles; polypath implementation),
Håkon Malmedal [ctb] (svglite: Opacity code)
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between vdiffr versions 0.3.2.1 dated 2020-06-28 and 0.3.2.2 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: An 'SVG' Graphics Device
Description: A graphics device for R that produces 'Scalable Vector Graphics'.
'svglite' is a fork of the older 'RSvgDevice' package.
Author: Hadley Wickham [aut],
Lionel Henry [aut],
Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
T Jake Luciani [aut],
Matthieu Decorde [aut],
Vaudor Lise [aut],
Tony Plate [ctb] (Early line dashing code),
David Gohel [ctb] (Line dashing code and raster code),
Yixuan Qiu [ctb] (Improved styles; polypath implementation),
Håkon Malmedal [ctb] (Opacity code),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@rstudio.com>
Diff between svglite versions 1.2.3.1 dated 2020-06-28 and 1.2.3.2 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Embeddable Cairo Graphics Device Driver
Description: This device uses Cairo and GTK to draw to the screen,
file (png, svg, pdf, and ps) or memory (arbitrary GdkDrawable
or Cairo context). The screen device may be embedded into RGtk2
interfaces and supports all interactive features of other graphics
devices, including getGraphicsEvent().
Author: Michael Lawrence
Maintainer: Michael Lawrence <michafla@gene.com>
Diff between cairoDevice versions 2.28.1 dated 2020-06-28 and 2.28.2 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: R Graphics Device using Cairo Graphics Library for Creating
High-Quality Bitmap (PNG, JPEG, TIFF), Vector (PDF, SVG,
PostScript) and Display (X11 and Win32) Output
Description: R graphics device using cairographics library that can be used to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environments (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>, Jeffrey Horner <jeff.horner@vanderbilt.edu>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between Cairo versions 1.5-12.1 dated 2020-06-28 and 1.5-12.2 dated 2020-07-07
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/cairogd.c | 1 + 3 files changed, 7 insertions(+), 6 deletions(-)
Title: Japanese Utility Functions and Data
Description: Some data treated by the Japanese R user require
unique operations and processing. These are caused by address, Kanji,
and traditional year representations. 'zipangu' transforms specific
to Japan into something more general one.
Author: Shinya Uryu [aut, cre] (<https://orcid.org/0000-0002-0493-6186>),
Hiroaki Yutani [ctb] (<https://orcid.org/0000-0002-3385-7233>),
Kazuhiro Maeda [ctb]
Maintainer: Shinya Uryu <suika1127@gmail.com>
Diff between zipangu versions 0.2.0 dated 2020-01-10 and 0.2.1 dated 2020-07-07
zipangu-0.2.0/zipangu/man/is_japanpost_zippath.Rd |only zipangu-0.2.1/zipangu/DESCRIPTION | 32 +- zipangu-0.2.1/zipangu/MD5 | 32 +- zipangu-0.2.1/zipangu/NAMESPACE | 1 zipangu-0.2.1/zipangu/NEWS.md | 12 zipangu-0.2.1/zipangu/R/address.R | 126 +++++----- zipangu-0.2.1/zipangu/R/convert-jyear.R | 15 + zipangu-0.2.1/zipangu/R/jholiday.R | 234 +++++++++---------- zipangu-0.2.1/zipangu/R/zipcode.R | 1 zipangu-0.2.1/zipangu/README.md | 26 +- zipangu-0.2.1/zipangu/build/zipangu.pdf |binary zipangu-0.2.1/zipangu/data/jpnprefs.rda |binary zipangu-0.2.1/zipangu/man/convert_jdate.Rd |only zipangu-0.2.1/zipangu/man/is_jholiday.Rd | 2 zipangu-0.2.1/zipangu/man/jpnprefs.Rd | 6 zipangu-0.2.1/zipangu/tests/testthat/test-address.R | 25 ++ zipangu-0.2.1/zipangu/tests/testthat/test-jholiday.R | 71 ++++- zipangu-0.2.1/zipangu/tests/testthat/test-jyear.R | 7 18 files changed, 371 insertions(+), 219 deletions(-)
Title: Interactive, Complex Heatmaps
Description: Make complex, interactive heatmaps. 'iheatmapr' includes a modular
system for iteratively building up complex heatmaps, as well as the
iheatmap() function for making relatively standard heatmaps.
Author: Alicia Schep [aut, cre] (<https://orcid.org/0000-0002-3915-0618>),
Sarah Kummerfeld [aut] (<https://orcid.org/0000-0002-0089-2358>),
Genentech [cph],
Andee Kaplan [rev] (Reviewer for rOpensci review process
https://github.com/ropensci/onboarding/issues/107),
Carl Ganz [rev] (Reviewer for rOpensci review process
https://github.com/ropensci/onboarding/issues/107),
Alex Johnson [ctb] (plotly.js library),
Étienne Tétreault-Pinard [ctb] (plotly.js library),
Mikola Lysenko [ctb] (plotly.js library),
Ricky Reusser [ctb] (plotly.js library),
Robert Monfera [ctb] (plotly.js library),
Nicolas Riesco [ctb] (plotly.js library),
Miklós Tusz [ctb] (plotly.js library),
Chelsea Douglas [ctb] (plotly.js library),
Ben Postlethwaite [ctb] (plotly.js library),
Chris Parmer [ctb] (plotly.js library),
Alex Vados [ctb] (plotly.js library),
Plotly [cph] (plotly.js library),
Frederick Boehm [ctb] (colorbars & main_heatmap)
Maintainer: Alicia Schep <aschep@gmail.com>
Diff between iheatmapr versions 0.4.12 dated 2019-11-23 and 0.5.0 dated 2020-07-07
DESCRIPTION | 20 MD5 | 250 +++++----- NAMESPACE | 3 NEWS.md | 5 R/AllClasses.R | 18 R/axes.R | 17 R/colorbars.R | 11 R/generic_subplots.R | 12 R/iheatmapr.R | 2 R/list_utils.R |only R/main_heatmap.R | 12 R/signal.R | 16 R/utils.R | 5 build/vignette.rds |binary inst/doc/iheatmapr-minimal.html | 15 man/access_component.Rd | 3 man/add_col_annotation.Rd | 15 man/add_col_barplot.Rd | 21 man/add_col_clustering.Rd | 18 man/add_col_clusters.Rd | 13 man/add_col_dendro.Rd | 15 man/add_col_groups.Rd | 25 - man/add_col_labels.Rd | 17 man/add_col_plot.Rd | 23 man/add_col_signal.Rd | 27 - man/add_col_summary.Rd | 25 - man/add_col_title.Rd | 15 man/add_iheatmap.Rd | 71 ++ man/add_main_heatmap.Rd | 59 +- man/add_row_annotation.Rd | 15 man/add_row_barplot.Rd | 21 man/add_row_clustering.Rd | 18 man/add_row_clusters.Rd | 13 man/add_row_dendro.Rd | 15 man/add_row_groups.Rd | 25 - man/add_row_labels.Rd | 17 man/add_row_plot.Rd | 23 man/add_row_signal.Rd | 27 - man/add_row_summary.Rd | 25 - man/add_row_title.Rd | 16 man/add_subplot.Rd | 13 man/iheatmap.Rd | 48 + man/iheatmap_list_utils.Rd |only man/iheatmapr.Rd | 5 man/iheatmapr_event.Rd | 7 man/main_heatmap.Rd | 35 - man/modify_layout.Rd | 1 man/reexports.Rd | 2 man/reorder_cols.Rd | 4 man/reorder_rows.Rd | 4 man/save_iheatmap.Rd | 1 man/setup_colorbar_grid.Rd | 11 man/setup_tooltip_options.Rd | 13 man/to_widget.Rd | 1 tests/testthat/reference/col_barplot_horizontal.rds |binary tests/testthat/reference/col_barplot_vertical.rds |binary tests/testthat/reference/col_clustering_hclust_horizontal.rds |binary tests/testthat/reference/col_clustering_hclust_k_horizontal.rds |binary tests/testthat/reference/col_clustering_hclust_k_vertical.rds |binary tests/testthat/reference/col_clustering_hclust_vertical.rds |binary tests/testthat/reference/col_clustering_kmeans_horizontal.rds |binary tests/testthat/reference/col_clustering_kmeans_vertical.rds |binary tests/testthat/reference/col_dendro_horizontal.rds |binary tests/testthat/reference/col_dendro_vertical.rds |binary tests/testthat/reference/col_groups_horizontal.rds |binary tests/testthat/reference/col_groups_vertical.rds |binary tests/testthat/reference/col_labels_continuous_horizontal.rds |binary tests/testthat/reference/col_labels_continuous_vertical.rds |binary tests/testthat/reference/col_labels_horizontal.rds |binary tests/testthat/reference/col_labels_vertical.rds |binary tests/testthat/reference/col_plot_horizontal.rds |binary tests/testthat/reference/col_plot_vertical.rds |binary tests/testthat/reference/col_scatter_plot_horizontal.rds |binary tests/testthat/reference/col_scatter_plot_vertical.rds |binary tests/testthat/reference/col_signal_horizontal.rds |binary tests/testthat/reference/col_signal_vertical.rds |binary tests/testthat/reference/col_summary_groups_horizontal.rds |binary tests/testthat/reference/col_summary_groups_vertical.rds |binary tests/testthat/reference/col_summary_horizontal.rds |binary tests/testthat/reference/col_summary_vertical.rds |binary tests/testthat/reference/col_title_horizontal.rds |binary tests/testthat/reference/col_title_vertical.rds |binary tests/testthat/reference/complex_example_horizontal.rds |binary tests/testthat/reference/complex_example_vertical.rds |binary tests/testthat/reference/main_heatmap.rds |binary tests/testthat/reference/main_heatmap_vertical.rds |binary tests/testthat/reference/row_barplot_horizontal.rds |binary tests/testthat/reference/row_barplot_vertical.rds |binary tests/testthat/reference/row_clustering_hclust_horizontal.rds |binary tests/testthat/reference/row_clustering_hclust_k_horizontal.rds |binary tests/testthat/reference/row_clustering_k_vertical.rds |binary tests/testthat/reference/row_clustering_kmeans_horizontal.rds |binary tests/testthat/reference/row_clustering_kmeans_vertical.rds |binary tests/testthat/reference/row_clustering_vertical.rds |binary tests/testthat/reference/row_dendro_horizontal.rds |binary tests/testthat/reference/row_dendro_vertical.rds |binary tests/testthat/reference/row_groups_horizontal.rds |binary tests/testthat/reference/row_groups_vertical.rds |binary tests/testthat/reference/row_labels_continuous_horizontal.rds |binary tests/testthat/reference/row_labels_continuous_vertical.rds |binary tests/testthat/reference/row_labels_custom_ticktext1_horizontal.rds |binary tests/testthat/reference/row_labels_custom_ticktext2_horizontal.rds |binary tests/testthat/reference/row_labels_custom_ticktext_tickvals_horizontal.rds |binary tests/testthat/reference/row_labels_custom_tickvals_horizontal.rds |binary tests/testthat/reference/row_labels_horizontal.rds |binary tests/testthat/reference/row_labels_vertical.rds |binary tests/testthat/reference/row_plot_horizontal.rds |binary tests/testthat/reference/row_plot_vertical.rds |binary tests/testthat/reference/row_scatter_plot_horizontal.rds |binary tests/testthat/reference/row_scatter_plot_vertical.rds |binary tests/testthat/reference/row_signal_horizontal.rds |binary tests/testthat/reference/row_signal_vertical.rds |binary tests/testthat/reference/row_summary_groups_horizontal.rds |binary tests/testthat/reference/row_summary_groups_vertical.rds |binary tests/testthat/reference/row_summary_horizontal.rds |binary tests/testthat/reference/row_summary_vertical.rds |binary tests/testthat/reference/row_title_horizontal.rds |binary tests/testthat/reference/row_title_vertical.rds |binary tests/testthat/reference/shared_axes_gap_bottom_horizontal.rds |binary tests/testthat/reference/shared_axes_gap_left_vertical.rds |binary tests/testthat/reference/shared_axes_gap_right_vertical.rds |binary tests/testthat/reference/shared_axes_gap_top_horizontal.rds |binary tests/testthat/reference/single_col_main_heatmap_horizontal.rds |only tests/testthat/reference/single_row_main_heatmap_horizontal.rds |only tests/testthat/reference/two_main_heatmap_horizontal.rds |binary tests/testthat/reference/two_main_heatmap_vertical.rds |binary tests/testthat/test_list_utils.R |only tests/testthat/test_main_heatmap.R | 10 tests/view_reference.html |only 129 files changed, 703 insertions(+), 400 deletions(-)
Title: Excess Certainty Adjusted Probability Estimate
Description: Implements the Excess Certainty Adjusted Probability adjustment procedure as described in the paper "Irrational Exuberance: Correcting Bias in Probability Estimates" by Gareth James, Peter Radchenko, and Bradley Rava (Journal of the American Statistical Association, 2020; <arXiv:1910.13570>). The package includes a function that preforms the ECAP adjustment and a function that estimates the parameters needed for implementing ECAP. For testing and reproducibility, the ESPN and FiveThirtyEight data used in the paper are also included.
Author: Bradley Rava, Peter Radchenko, and Gareth M. James
Maintainer: Bradley Rava <brava@marshall.usc.edu>
Diff between ecap versions 0.1.0 dated 2020-06-29 and 0.1.1 dated 2020-07-07
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 6 +++++- R/ecap.R | 6 +++++- man/ecap.Rd | 2 +- 5 files changed, 18 insertions(+), 10 deletions(-)
Title: Sunburst 'Htmlwidget'
Description: Make interactive 'd3.js' sequence sunburst diagrams in R with the
convenience and infrastructure of an 'htmlwidget'.
Author: Mike Bostock [aut, cph] (d3.js library, http://d3js.org),
Kerry Rodden [aut, cph] (sequences library in htmlwidgets/lib,
https://gist.github.com/kerryrodden/7090426),
Kevin Warne [aut, cph] (d2b sunburst library in htmlwidgets/lib,
https://github.com/d2bjs/d2b),
Kent Russell [aut, cre] (R interface),
Florian Breitwieser [ctb] (R interface),
CJ Yetman [ctb] (R interface, <https://orcid.org/0000-0001-5099-9500>)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between sunburstR versions 2.1.3 dated 2019-11-05 and 2.1.4 dated 2020-07-06
DESCRIPTION | 10 - MD5 | 22 +-- NEWS.md | 4 R/d2b.R | 5 build/vignette.rds |binary inst/doc/sunburst-2-0-0.html | 230 ++++++++++++++++++++++++++++------------- inst/examples/example_sund2b.R | 40 ++++--- inst/htmlwidgets/sund2b.js | 6 + man/sunburst.Rd | 26 +++- man/sund2b.Rd | 59 ++++++---- man/sund2bBreadcrumb.Rd | 2 man/sund2bTooltip.Rd | 5 12 files changed, 273 insertions(+), 136 deletions(-)
Title: Rounding to Decimal Digits
Description: Decimal rounding is non-trivial in binary arithmetic. ISO
standard round to even is more rare than typically assumed as most decimal fractions
are not exactly representable in binary. Our roundX() versions explore differences
between current and potential future versions of round() in R.
Further, provides (some partly related) C99 math lib functions not in base R.
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
R-core [ctb] ("r1.C" only)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between round versions 0.12-1 dated 2020-01-24 and 0.12-2 dated 2020-07-06
DESCRIPTION | 11 - MD5 | 24 +-- R/round.R | 6 build/round.pdf |binary build/vignette.rds |binary inst/NEWS.Rd | 18 ++ inst/doc/Rounding.Rmd | 227 ++++++++++++++++++++++++-------- inst/doc/Rounding.html | 340 +++++++++++++++++++++++++++---------------------- man/roundX.Rd | 17 +- src/fround.c | 5 tests/round-tst.R | 58 +++++--- vignettes/Rounding.Rmd | 227 ++++++++++++++++++++++++-------- vignettes/style.css | 2 13 files changed, 623 insertions(+), 312 deletions(-)
Title: R Functions for Chapter 3,4,6,7,9,10,11,12,14,15 of Sample Size
Calculation in Clinical Research
Description: Functions and Examples in Sample Size Calculation in
Clinical Research.
Author: Ed Zhang ; Vicky Qian Wu ; Shein-Chung Chow ; Harry G.Zhang
(Quality check) <ed.zhang.jr@gmail.com>
Maintainer: Vicky Qian Wu <wuqian7@gmail.com>
Diff between TrialSize versions 1.3 dated 2013-06-03 and 1.4 dated 2020-07-06
TrialSize-1.3/TrialSize/data |only TrialSize-1.3/TrialSize/man/Example.3.1.4.Rd |only TrialSize-1.4/TrialSize/DESCRIPTION | 13 TrialSize-1.4/TrialSize/MD5 | 212 ++++------ TrialSize-1.4/TrialSize/NAMESPACE | 1 TrialSize-1.4/TrialSize/R/Cox.Equality.R | 9 TrialSize-1.4/TrialSize/R/Cox.Equivalence.R | 9 TrialSize-1.4/TrialSize/R/Cox.NIS.R | 9 TrialSize-1.4/TrialSize/R/OneSampleMean.Equality.R | 4 TrialSize-1.4/TrialSize/R/OneSampleMean.Equivalence.R | 7 TrialSize-1.4/TrialSize/R/OneSampleMean.NIS.R | 4 TrialSize-1.4/TrialSize/R/OneSampleProportion.Equality.R | 6 TrialSize-1.4/TrialSize/R/OneSampleProportion.Equivalence.R | 6 TrialSize-1.4/TrialSize/R/OneSampleProportion.NIS.R | 6 TrialSize-1.4/TrialSize/R/TwoSampleCrossOver.Equality.R | 4 TrialSize-1.4/TrialSize/R/TwoSampleCrossOver.Equivalence.R | 6 TrialSize-1.4/TrialSize/R/TwoSampleCrossOver.NIS.R | 5 TrialSize-1.4/TrialSize/R/TwoSampleMean.Equality.R | 7 TrialSize-1.4/TrialSize/R/TwoSampleMean.Equivalence.R | 7 TrialSize-1.4/TrialSize/R/TwoSampleMean.NIS.R | 7 TrialSize-1.4/TrialSize/R/TwoSampleProportion.Equality.R | 9 TrialSize-1.4/TrialSize/R/TwoSampleProportion.Equivalence.R | 6 TrialSize-1.4/TrialSize/R/TwoSampleProportion.NIS.R | 7 TrialSize-1.4/TrialSize/man/AB.withDescalation.Rd | 5 TrialSize-1.4/TrialSize/man/AB.withoutDescalation.Rd | 4 TrialSize-1.4/TrialSize/man/ABE.Rd | 4 TrialSize-1.4/TrialSize/man/ANOVA.Repeat.Measure.Rd | 7 TrialSize-1.4/TrialSize/man/Carry.Over.Rd | 4 TrialSize-1.4/TrialSize/man/Cochran.Armitage.Trend.Rd | 4 TrialSize-1.4/TrialSize/man/Cox.Equality.Rd | 11 TrialSize-1.4/TrialSize/man/Cox.Equivalence.Rd | 15 TrialSize-1.4/TrialSize/man/Cox.NIS.Rd | 11 TrialSize-1.4/TrialSize/man/CrossOver.ISV.Equality.Rd | 4 TrialSize-1.4/TrialSize/man/CrossOver.ISV.Equivalence.Rd | 6 TrialSize-1.4/TrialSize/man/CrossOver.ISV.NIS.Rd | 4 TrialSize-1.4/TrialSize/man/Dose.Min.Effect.Rd | 4 TrialSize-1.4/TrialSize/man/Dose.Response.Linear.Rd | 4 TrialSize-1.4/TrialSize/man/Dose.Response.binary.Rd | 4 TrialSize-1.4/TrialSize/man/Dose.Response.time.to.event.Rd | 4 TrialSize-1.4/TrialSize/man/IBE.Rd | 7 TrialSize-1.4/TrialSize/man/ISCV.Equality.Rd | 5 TrialSize-1.4/TrialSize/man/ISCV.Equivalence.Rd | 6 TrialSize-1.4/TrialSize/man/ISCV.NIS.Rd | 4 TrialSize-1.4/TrialSize/man/ISV.Equality.Rd | 5 TrialSize-1.4/TrialSize/man/ISV.Equivalence.Rd | 4 TrialSize-1.4/TrialSize/man/ISV.NIS.Rd | 7 TrialSize-1.4/TrialSize/man/InterSV.Equality.Rd | 4 TrialSize-1.4/TrialSize/man/InterSV.NIS.Rd | 4 TrialSize-1.4/TrialSize/man/MeanWilliamsDesign.Equality.Rd | 4 TrialSize-1.4/TrialSize/man/MeanWilliamsDesign.Equivalence.Rd | 4 TrialSize-1.4/TrialSize/man/MeanWilliamsDesign.NIS.Rd | 5 TrialSize-1.4/TrialSize/man/Multiple.Testing.Rd | 6 TrialSize-1.4/TrialSize/man/Nonpara.Independ.Rd | 4 TrialSize-1.4/TrialSize/man/Nonpara.One.Sample.Rd | 4 TrialSize-1.4/TrialSize/man/Nonpara.Two.Sample.Rd | 4 TrialSize-1.4/TrialSize/man/OneSampleMean.Equality.Rd | 6 TrialSize-1.4/TrialSize/man/OneSampleMean.Equivalence.Rd | 6 TrialSize-1.4/TrialSize/man/OneSampleMean.NIS.Rd | 6 TrialSize-1.4/TrialSize/man/OneSampleProportion.Equality.Rd | 10 TrialSize-1.4/TrialSize/man/OneSampleProportion.Equivalence.Rd | 8 TrialSize-1.4/TrialSize/man/OneSampleProportion.NIS.Rd | 8 TrialSize-1.4/TrialSize/man/OneSide.fixEffect.Rd | 4 TrialSize-1.4/TrialSize/man/OneSide.varyEffect.Rd | 6 TrialSize-1.4/TrialSize/man/OneWayANOVA.PairwiseComparison.Rd | 4 TrialSize-1.4/TrialSize/man/OneWayANOVA.pairwise.Rd | 5 TrialSize-1.4/TrialSize/man/PBE.Rd | 4 TrialSize-1.4/TrialSize/man/Propensity.Score.nostrata.Rd | 4 TrialSize-1.4/TrialSize/man/Propensity.Score.strata.Rd | 4 TrialSize-1.4/TrialSize/man/QOL.Rd | 4 TrialSize-1.4/TrialSize/man/QT.PK.crossover.Rd | 4 TrialSize-1.4/TrialSize/man/QT.PK.parallel.Rd | 4 TrialSize-1.4/TrialSize/man/QT.crossover.Rd | 5 TrialSize-1.4/TrialSize/man/QT.parallel.Rd | 4 TrialSize-1.4/TrialSize/man/RelativeRisk.Equality.Rd | 4 TrialSize-1.4/TrialSize/man/RelativeRisk.Equivalence.Rd | 4 TrialSize-1.4/TrialSize/man/RelativeRisk.NIS.Rd | 4 TrialSize-1.4/TrialSize/man/RelativeRiskCrossOver.Equality.Rd | 5 TrialSize-1.4/TrialSize/man/RelativeRiskCrossOver.Equivalence.Rd | 5 TrialSize-1.4/TrialSize/man/RelativeRiskCrossOver.NIS.Rd | 4 TrialSize-1.4/TrialSize/man/Sensitivity.Index.Rd | 4 TrialSize-1.4/TrialSize/man/Stuart.Maxwell.Test.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleCrossOver.Equality.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleCrossOver.Equivalence.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleCrossOver.NIS.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleMean.Equality.Rd | 5 TrialSize-1.4/TrialSize/man/TwoSampleMean.Equivalence.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleMean.NIS.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleProportion.Equality.Rd | 11 TrialSize-1.4/TrialSize/man/TwoSampleProportion.Equivalence.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleProportion.NIS.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleSeqCrossOver.Equality.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleSeqCrossOver.Equivalence.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleSeqCrossOver.NIS.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleSurvival.Conditional.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleSurvival.Equality.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleSurvival.Equivalence.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSampleSurvival.NIS.Rd | 4 TrialSize-1.4/TrialSize/man/TwoSide.fixEffect.Rd | 2 TrialSize-1.4/TrialSize/man/TwoSide.varyEffect.Rd | 4 TrialSize-1.4/TrialSize/man/Vaccine.CEM.Rd | 4 TrialSize-1.4/TrialSize/man/Vaccine.ELDI.Rd | 4 TrialSize-1.4/TrialSize/man/Vaccine.RDI.Rd | 4 TrialSize-1.4/TrialSize/man/Vitro.BE.Rd | 4 TrialSize-1.4/TrialSize/man/WilliamsDesign.Equality.Rd | 4 TrialSize-1.4/TrialSize/man/WilliamsDesign.Equivalence.Rd | 4 TrialSize-1.4/TrialSize/man/WilliamsDesign.NIS.Rd | 4 TrialSize-1.4/TrialSize/man/gof.Pearson.Rd | 4 TrialSize-1.4/TrialSize/man/gof.Pearson.twoway.Rd | 5 108 files changed, 199 insertions(+), 562 deletions(-)
Title: Download DBnomics Data
Description: R access to hundreds of millions data series from DBnomics API
(<https://db.nomics.world/>).
Author: Sebastien Galais [cre, ctb],
Thomas Brand [aut]
Maintainer: Sebastien Galais <s915.stem@gmail.com>
Diff between rdbnomics versions 0.6.1 dated 2020-04-23 and 0.6.2 dated 2020-07-06
rdbnomics-0.6.1/rdbnomics/tests/testthat |only rdbnomics-0.6.1/rdbnomics/tests/testthat.R |only rdbnomics-0.6.2/rdbnomics/DESCRIPTION | 12 rdbnomics-0.6.2/rdbnomics/MD5 | 43 rdbnomics-0.6.2/rdbnomics/NEWS.md | 5 rdbnomics-0.6.2/rdbnomics/R/dbnomics.R | 100 rdbnomics-0.6.2/rdbnomics/R/dot_rdb.R | 82 rdbnomics-0.6.2/rdbnomics/R/rdb_datasets.R | 8 rdbnomics-0.6.2/rdbnomics/R/rdb_dimensions.R | 17 rdbnomics-0.6.2/rdbnomics/R/rdb_last_updates.R | 5 rdbnomics-0.6.2/rdbnomics/R/rdb_series.R | 24 rdbnomics-0.6.2/rdbnomics/R/rdbnomics.R | 2 rdbnomics-0.6.2/rdbnomics/R/utils.R | 145 rdbnomics-0.6.2/rdbnomics/README.md | 28 rdbnomics-0.6.2/rdbnomics/build/vignette.rds |binary rdbnomics-0.6.2/rdbnomics/inst/doc/rdbnomics.R | 983 ++++-- rdbnomics-0.6.2/rdbnomics/inst/doc/rdbnomics.Rmd | 986 ++++-- rdbnomics-0.6.2/rdbnomics/inst/doc/rdbnomics.html | 3233 +++------------------- rdbnomics-0.6.2/rdbnomics/inst/tinytest |only rdbnomics-0.6.2/rdbnomics/man/dbnomics.Rd | 2 rdbnomics-0.6.2/rdbnomics/man/figures |only rdbnomics-0.6.2/rdbnomics/tests/tinytest.R |only rdbnomics-0.6.2/rdbnomics/vignettes/rdbnomics.Rmd | 986 ++++-- 23 files changed, 2714 insertions(+), 3947 deletions(-)
Title: Fast Imputations Using 'Rcpp' and 'Armadillo'
Description: Fast imputations under the object-oriented programming paradigm.
Moreover there are offered a few functions built to work with popular R packages such as 'data.table' or 'dplyr'.
The biggest improvement in time performance could be achieve for a calculation where a grouping variable have to be used.
A single evaluation of a quantitative model for the multiple imputations is another major enhancement.
A new major improvement is one of the fastest predictive mean matching in the R world because of presorting and binary search.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between miceFast versions 0.5.1 dated 2019-08-19 and 0.6.1 dated 2020-07-06
miceFast-0.5.1/miceFast/inst/extdata/images |only miceFast-0.6.1/miceFast/DESCRIPTION | 24 miceFast-0.6.1/miceFast/MD5 | 91 miceFast-0.6.1/miceFast/NAMESPACE | 108 miceFast-0.6.1/miceFast/NEWS.md | 83 miceFast-0.6.1/miceFast/R/RcppExports.R | 68 miceFast-0.6.1/miceFast/R/VIF.R | 306 +- miceFast-0.6.1/miceFast/R/data.R | 98 miceFast-0.6.1/miceFast/R/fill_NA.R | 791 +++-- miceFast-0.6.1/miceFast/R/fill_NA_N.R | 812 +++-- miceFast-0.6.1/miceFast/R/miceFast.R |only miceFast-0.6.1/miceFast/R/naive_fill_NA.R |only miceFast-0.6.1/miceFast/R/pmm.R |only miceFast-0.6.1/miceFast/R/zzz.R | 29 miceFast-0.6.1/miceFast/build/vignette.rds |binary miceFast-0.6.1/miceFast/data/air_miss.rda |binary miceFast-0.6.1/miceFast/inst/doc/miceFast-intro.R | 617 ++-- miceFast-0.6.1/miceFast/inst/doc/miceFast-intro.Rmd | 1003 +++--- miceFast-0.6.1/miceFast/inst/doc/miceFast-intro.html | 1817 ++++++------ miceFast-0.6.1/miceFast/inst/extdata/performance_validity.R | 1127 +++---- miceFast-0.6.1/miceFast/man/VIF.Rd | 40 miceFast-0.6.1/miceFast/man/air_miss.Rd | 32 miceFast-0.6.1/miceFast/man/figures |only miceFast-0.6.1/miceFast/man/fill_NA.Rd | 368 +- miceFast-0.6.1/miceFast/man/fill_NA_N.Rd | 414 +- miceFast-0.6.1/miceFast/man/naive_fill_NA.Rd |only miceFast-0.6.1/miceFast/man/neibo.Rd |only miceFast-0.6.1/miceFast/man/neibo_index.Rd |only miceFast-0.6.1/miceFast/src/R_funs.cpp | 57 miceFast-0.6.1/miceFast/src/RcppExports.cpp | 65 miceFast-0.6.1/miceFast/src/miceFast.h | 56 miceFast-0.6.1/miceFast/src/miceFast_additfunc.cpp | 44 miceFast-0.6.1/miceFast/src/miceFast_class.cpp | 88 miceFast-0.6.1/miceFast/src/miceFast_quantmodels.cpp | 375 ++ miceFast-0.6.1/miceFast/tests/testthat.R | 14 miceFast-0.6.1/miceFast/tests/testthat/test-corrData_fill.R | 125 miceFast-0.6.1/miceFast/tests/testthat/test-impute.R | 563 +-- miceFast-0.6.1/miceFast/tests/testthat/test-impute_N.R | 66 miceFast-0.6.1/miceFast/tests/testthat/test-imputes_funcs.R | 744 +++- miceFast-0.6.1/miceFast/tests/testthat/test-naive_fill_NA.R |only miceFast-0.6.1/miceFast/tests/testthat/test-vif.R | 81 miceFast-0.6.1/miceFast/vignettes/miceFast-intro.Rmd | 1003 +++--- 42 files changed, 6238 insertions(+), 4871 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-29 0.1.4
2019-05-08 0.1.1
2019-04-09 0.1.0.0
Title: Install the 'Natverse' Packages from Scratch
Description: Provides streamlined installation for packages from the 'natverse',
a suite of R packages for computational neuroanatomy built on top of the
'nat' 'NeuroAnatomy Toolbox' package. Installation of the complete
'natverse' suite requires a 'GitHub' user account and personal access token
'GITHUB_PAT'. 'natmanager' will help the end user set this up if necessary.
Author: Sridhar Jagannathan [aut, cre]
(<https://orcid.org/0000-0002-2078-1145>),
Gregory Jefferis [aut] (<https://orcid.org/0000-0002-0587-9355>)
Maintainer: Sridhar Jagannathan <j.sridharrajan@gmail.com>
Diff between natmanager versions 0.4.0 dated 2020-03-11 and 0.4.6 dated 2020-07-06
DESCRIPTION | 8 +++---- MD5 | 16 +++++++-------- NEWS.md | 30 ++++++++++++++++++++++++++++ R/install.R | 56 ++++++++++++++++++++++++++++++++++++++---------------- R/update.R | 50 +++++++++++++++++++++++++++++++++--------------- R/utils.R | 27 ++++++++++++++++++++++++++ README.md | 9 ++++++++ man/install.Rd | 16 ++++++++++++--- man/selfupdate.Rd | 13 +++++++++++- 9 files changed, 178 insertions(+), 47 deletions(-)
Title: Tools for Developing R Packages Interfacing with 'Stan'
Description: Provides various tools for developers of R packages interfacing
with 'Stan' <https://mc-stan.org>, including functions to set up the required
package structure, S3 generics and default methods to unify function naming
across 'Stan'-based R packages, and vignettes with recommendations for
developers.
Author: Jonah Gabry [aut, cre],
Ben Goodrich [aut],
Martin Lysy [aut],
Stefan Siegert [ctb],
Trustees of Columbia University [cph]
Maintainer: Jonah Gabry <jsg2201@columbia.edu>
Diff between rstantools versions 2.1.0 dated 2020-06-01 and 2.1.1 dated 2020-07-06
DESCRIPTION | 10 - MD5 | 20 +-- NEWS.md | 6 - inst/doc/developer-guidelines.html | 2 inst/doc/minimal-rstan-package.R | 14 +- inst/doc/minimal-rstan-package.Rmd | 18 +-- inst/doc/minimal-rstan-package.html | 172 ++++++++++++++++++++--------- inst/include/sys/Makevars | 4 inst/include/sys/Makevars.win | 4 tests/testthat/test-rstan_create_package.R | 8 - vignettes/minimal-rstan-package.Rmd | 18 +-- 11 files changed, 175 insertions(+), 101 deletions(-)
Title: Ocean Biodiversity Information System (OBIS) Client
Description: Client for the Ocean Biodiversity Information System (<https://obis.org>).
Author: Pieter Provoost [cre, aut],
Samuel Bosch [aut],
Ward Appeltans [ctb],
OBIS [cph]
Maintainer: Pieter Provoost <pieterprovoost@gmail.com>
Diff between robis versions 2.1.8 dated 2019-06-03 and 2.3.9 dated 2020-07-06
robis-2.1.8/robis/inst |only robis-2.3.9/robis/DESCRIPTION | 17 +-- robis-2.3.9/robis/MD5 | 41 ++++---- robis-2.3.9/robis/NAMESPACE | 7 + robis-2.3.9/robis/NEWS.md | 52 ++++++++++ robis-2.3.9/robis/R/area.R | 2 robis-2.3.9/robis/R/checklist.R | 27 +++-- robis-2.3.9/robis/R/dataset.R | 7 + robis-2.3.9/robis/R/map.R | 18 +++ robis-2.3.9/robis/R/mof.R |only robis-2.3.9/robis/R/node.R | 2 robis-2.3.9/robis/R/occurrence.R | 91 ++++++++++++++----- robis-2.3.9/robis/R/robis.R | 3 robis-2.3.9/robis/R/util.R | 23 +++- robis-2.3.9/robis/man/checklist.Rd | 6 + robis-2.3.9/robis/man/dataset.Rd | 4 robis-2.3.9/robis/man/get_geometry.Rd |only robis-2.3.9/robis/man/map_leaflet.Rd | 2 robis-2.3.9/robis/man/measurements.Rd |only robis-2.3.9/robis/man/occurrence.Rd | 32 ++++++ robis-2.3.9/robis/man/robis.Rd | 1 robis-2.3.9/robis/tests/testthat/test_checklist.R | 7 + robis-2.3.9/robis/tests/testthat/test_measurements.R |only robis-2.3.9/robis/tests/testthat/test_occurrence.R | 7 + 24 files changed, 277 insertions(+), 72 deletions(-)
Title: Nonparametric Regression via Smoothing Splines
Description: Multiple and generalized nonparametric regression using smoothing spline ANOVA models and generalized additive models, as described in Helwig (2020) <doi:10.4135/9781526421036885885>. Includes support for Gaussian and non-Gaussian responses, smoothers for multiple types of predictors, interactions between smoothers of mixed types, and eight different methods for smoothing parameter selection.
Author: Nathaniel E. Helwig <helwig@umn.edu>
Maintainer: Nathaniel E. Helwig <helwig@umn.edu>
Diff between npreg versions 1.0-2 dated 2020-05-04 and 1.0-3 dated 2020-07-06
ChangeLog | 34 ++++++++ DESCRIPTION | 10 +- MD5 | 37 ++++---- NAMESPACE | 8 - R/NegBin.R |only R/check_control.R | 18 +++- R/check_family.R | 12 +- R/fit_gsm.R | 203 +++++++++++++++++++++++++++++++------------------ R/gsm.R | 20 ++++ R/predict.gsm.R | 4 R/predict.sm.R | 4 R/sm.R | 6 - R/ss.R | 6 - R/summary.gsm.R | 14 +-- R/tune.theta.R |only man/NegBin.Rd |only man/gsm.Rd | 112 ++++++++++++++++++--------- man/npreg-internals.Rd | 1 man/predict.gsm.Rd | 4 man/sm.Rd | 6 - man/ss.Rd | 4 21 files changed, 333 insertions(+), 170 deletions(-)
Title: Kernel Learning Integrative Clustering
Description: Kernel Learning Integrative Clustering (KLIC) is an algorithm that allows to combine multiple kernels, each representing a different measure of the similarity between a set of observations. The contribution of each kernel on the final clustering is weighted according to the amount of information carried by it. As well as providing the functions required to perform the kernel-based clustering, this package also allows the user to simply give the data as input: the kernels are then built using consensus clustering. Different strategies to choose the best number of clusters are also available. For further details please see Cabassi and Kirk (2020) <doi:10.1093/bioinformatics/btaa593>.
Author: Alessandra Cabassi [aut, cre] (<https://orcid.org/0000-0003-1605-652X>),
Paul DW Kirk [ths] (<https://orcid.org/0000-0002-5931-7489>),
Mehmet Gonen [ctb] (<https://orcid.org/0000-0002-2483-075X>)
Maintainer: Alessandra Cabassi <alessandra.cabassi@mrc-bsu.cam.ac.uk>
Diff between klic versions 1.0.2 dated 2020-04-03 and 1.0.4 dated 2020-07-06
DESCRIPTION | 14 ++--- MD5 | 20 +++---- R/klic.R | 27 +++++++--- R/lmkkmeans.R | 10 +++ README.md | 9 ++- build/vignette.rds |binary inst/CITATION | 8 +- inst/doc/klic-vignette.html | 16 ++--- man/klic.Rd | 3 - vignettes/klic-vignette_files/figure-html/consensus_cluster-1.png |binary vignettes/klic-vignette_files/figure-html/spectrum_shift-1.png |binary 11 files changed, 66 insertions(+), 41 deletions(-)
Title: Input Output Analysis
Description: Calculates fundamental IO matrices (Leontief, Wassily W. (1951) <doi:10.1038/scientificamerican1051-15>); within period analysis via various rankings and coefficients (Sonis and Hewings (2006) <doi:10.1080/09535319200000013>, Blair and Miller (2009) <ISBN:978-0-521-73902-3>, Antras et al (2012) <doi:10.3386/w17819>, Hummels, Ishii, and Yi (2001) <doi:10.1016/S0022-1996(00)00093-3>); across period analysis with impact analysis (Dietzenbacher, van der Linden, and Steenge (2006) <doi:10.1080/09535319300000017>, Sonis, Hewings, and Guo (2006) <doi:10.1080/09535319600000002>); and a variety of table operators.
Author: John Wade [aut, cre],
Ignacio Sarmiento-Barbieri [aut]
Maintainer: John Wade <jjpwade2@illinois.edu>
Diff between ioanalysis versions 0.3.2 dated 2020-06-08 and 0.3.3 dated 2020-07-06
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- R/multipliers.R | 4 ++-- R/ras.R | 2 +- man/ioanalysis.Rd |only man/multipliers.Rd | 6 +++--- 6 files changed, 15 insertions(+), 14 deletions(-)
Title: Cluster-of-Clusters Analysis
Description: Contains the R functions needed to perform Cluster-Of-Clusters Analysis (COCA) and Consensus Clustering (CC). For further details please see Cabassi and Kirk (2020) <doi:10.1093/bioinformatics/btaa593>.
Author: Alessandra Cabassi [aut, cre] (<https://orcid.org/0000-0003-1605-652X>),
Paul DW Kirk [ths] (<https://orcid.org/0000-0002-5931-7489>)
Maintainer: Alessandra Cabassi <alessandra.cabassi@mrc-bsu.cam.ac.uk>
Diff between coca versions 1.0.4 dated 2020-03-26 and 1.1.0 dated 2020-07-06
DESCRIPTION | 12 - MD5 | 16 +- R/consensus-cluster.R | 71 ++++++---- README.md | 10 + build/vignette.rds |binary inst/CITATION | 8 - inst/doc/coca-vignette.html | 8 - man/consensusCluster.Rd | 18 ++ vignettes/coca-vignette_files/figure-html/coca_unknownK-1.png |binary 9 files changed, 91 insertions(+), 52 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] (ORCID:0000-0001-5411-1409),
Cameron Smith [aut],
George Sugihara [aut, ccp] (ORCID:0000-0002-2863-6946),
Ethan Deyle [aut] (ORCID:0000-0001-8704-8434),
Erik Saberski [ctb] (ORCID:0000-0002-6475-6187),
Hao Ye [ctb] (<https://orcid.org/0000-0002-8630-1458>),
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.3.8.5 dated 2020-06-23 and 1.5.0 dated 2020-07-06
rEDM-1.3.8.5/rEDM/src/cppEDM/src/AuxFunc.cc |only rEDM-1.3.8.5/rEDM/src/cppEDM/src/AuxFunc.h |only rEDM-1.3.8.5/rEDM/src/cppEDM/src/DateTimeUtil.cc |only rEDM-1.3.8.5/rEDM/src/cppEDM/src/Embed.cc |only rEDM-1.3.8.5/rEDM/src/cppEDM/src/Embed.h |only rEDM-1.3.8.5/rEDM/src/cppEDM/src/Interface.cc |only rEDM-1.3.8.5/rEDM/src/cppEDM/src/Neighbors.cc |only rEDM-1.3.8.5/rEDM/src/cppEDM/src/Neighbors.h |only rEDM-1.5.0/rEDM/DESCRIPTION | 9 rEDM-1.5.0/rEDM/MD5 | 82 - rEDM-1.5.0/rEDM/NEWS | 6 rEDM-1.5.0/rEDM/R/EDM.R | 5 rEDM-1.5.0/rEDM/R/LegacyInterface.R | 9 rEDM-1.5.0/rEDM/build/vignette.rds |binary rEDM-1.5.0/rEDM/data/paramecium_didinium.RData |only rEDM-1.5.0/rEDM/inst/doc/rEDM-tutorial.Rmd | 11 rEDM-1.5.0/rEDM/inst/doc/rEDM-tutorial.pdf |binary rEDM-1.5.0/rEDM/man/MakeBlock.Rd | 4 rEDM-1.5.0/rEDM/man/paramecium_didinium.Rd |only rEDM-1.5.0/rEDM/src/Embed.cpp | 18 rEDM-1.5.0/rEDM/src/Makevars | 2 rEDM-1.5.0/rEDM/src/Multiview.cpp | 8 rEDM-1.5.0/rEDM/src/RcppEDMCommon.cpp | 9 rEDM-1.5.0/rEDM/src/RcppEDMCommon.h | 5 rEDM-1.5.0/rEDM/src/cppEDM/src/API.cc |only rEDM-1.5.0/rEDM/src/cppEDM/src/API.h |only rEDM-1.5.0/rEDM/src/cppEDM/src/CCM.cc | 863 +++--------- rEDM-1.5.0/rEDM/src/cppEDM/src/CCM.h |only rEDM-1.5.0/rEDM/src/cppEDM/src/Common.cc | 94 - rEDM-1.5.0/rEDM/src/cppEDM/src/Common.h | 335 ---- rEDM-1.5.0/rEDM/src/cppEDM/src/DataFrame.h | 263 +-- rEDM-1.5.0/rEDM/src/cppEDM/src/DateTime.cc |only rEDM-1.5.0/rEDM/src/cppEDM/src/DateTime.h | 15 rEDM-1.5.0/rEDM/src/cppEDM/src/EDM.cc |only rEDM-1.5.0/rEDM/src/cppEDM/src/EDM.h |only rEDM-1.5.0/rEDM/src/cppEDM/src/EDM_Formatting.cc |only rEDM-1.5.0/rEDM/src/cppEDM/src/EDM_Neighbors.cc |only rEDM-1.5.0/rEDM/src/cppEDM/src/EDM_Neighbors.h |only rEDM-1.5.0/rEDM/src/cppEDM/src/Eval.cc | 415 ++--- rEDM-1.5.0/rEDM/src/cppEDM/src/Multiview.cc | 706 ++++------ rEDM-1.5.0/rEDM/src/cppEDM/src/Multiview.h |only rEDM-1.5.0/rEDM/src/cppEDM/src/Parameter.cc | 278 +--- rEDM-1.5.0/rEDM/src/cppEDM/src/Parameter.h | 142 -- rEDM-1.5.0/rEDM/src/cppEDM/src/SMap.cc | 389 +---- rEDM-1.5.0/rEDM/src/cppEDM/src/SMap.h |only rEDM-1.5.0/rEDM/src/cppEDM/src/Simplex.cc | 303 +--- rEDM-1.5.0/rEDM/src/cppEDM/src/Simplex.h |only rEDM-1.5.0/rEDM/src/cppEDM/src/Version.h | 3 rEDM-1.5.0/rEDM/src/cppEDM/src/makefile | 83 - rEDM-1.5.0/rEDM/src/cppEDM/src/makefile.mingw | 85 - rEDM-1.5.0/rEDM/src/cppEDM/src/makefile.windows | 71 - rEDM-1.5.0/rEDM/vignettes/rEDM-tutorial.Rmd | 11 rEDM-1.5.0/rEDM/vignettes/rEDM-tutorial.html | 1594 +++++++++++------------ 53 files changed, 2384 insertions(+), 3434 deletions(-)
More information about mrgsim.parallel at CRAN
Permanent link
Title: Hybrid Bayesian Networks Using R and JAGS
Description: Facilities for easy implementation of hybrid Bayesian networks
using R. Bayesian networks are directed acyclic graphs representing joint
probability distributions, where each node represents a random variable and
each edge represents conditionality. The full joint distribution is therefore
factorized as a product of conditional densities, where each node is assumed
to be independent of its non-descendents given information on its parent nodes.
Since exact, closed-form algorithms are computationally burdensome for inference
within hybrid networks that contain a combination of continuous and discrete
nodes, particle-based approximation techniques like Markov Chain Monte Carlo
are popular. We provide a user-friendly interface to constructing these networks
and running inference using the 'rjags' package. Econometric analyses (maximum
expected utility under competing policies, value of information) involving
decision and utility nodes are also supported.
Author: Jarrod E. Dalton <daltonj@ccf.org> and Benjamin Nutter
<benjamin.nutter@gmail.com>
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between HydeNet versions 0.10.10 dated 2020-05-15 and 0.10.11 dated 2020-07-06
DESCRIPTION | 6 MD5 | 26 +-- NAMESPACE | 1 R/bindPosterior.R | 47 ++--- R/chain.R | 4 R/cpt.R | 9 - R/plot.HydeNetwork.R | 22 +- inst/doc/DecisionNetworks.html | 260 +++++++++++++++++--------------- inst/doc/GettingStartedWithHydeNet.html | 38 ++-- inst/doc/HydeNetPlots.html | 4 inst/doc/WorkingWithHydeNetObjects.html | 6 man/bindSim.Rd | 2 man/chain.Rd | 4 tests/testthat/test-plot.HydeNetwork.R | 5 14 files changed, 227 insertions(+), 207 deletions(-)
Title: Automated Spectral Deconvolution, Alignment, and Metabolite
Identification in GC/MS-Based Untargeted Metabolomics
Description: Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics. Outputs a table with compound names, matching scores and the integrated area of the compound for each sample. Package implementation is described in Domingo-Almenara et al. (2016) <doi:10.1021/acs.analchem.6b02927>.
Author: Xavier Domingo-Almenara [aut, cre, cph], Jasen P. Finch [ctb], Sara Samino [aut], Maria Vinaixa [aut], Alexandre Perera [aut, ths], Jesus Brezmes [aut, ths], Oscar Yanes [aut, ths]
Maintainer: Xavier Domingo-Almenara <xavier.domingoa@eurecat.org>
Diff between erah versions 1.1.0 dated 2018-07-11 and 1.1.1 dated 2020-07-06
erah-1.1.0/erah/inst/doc/eRahManual.pdf.asis |only erah-1.1.0/erah/vignettes/eRahManual.pdf.asis |only erah-1.1.1/erah/DESCRIPTION | 18 ++++---- erah-1.1.1/erah/MD5 | 55 +++++++++++++------------- erah-1.1.1/erah/R/MSimport.R | 16 ++++++- erah-1.1.1/erah/R/alignment.R | 4 - erah-1.1.1/erah/R/identification.R | 29 ++++++------- erah-1.1.1/erah/R/missingCompRecovery.R | 15 +++---- erah-1.1.1/erah/R/plotting.R | 13 ++++-- erah-1.1.1/erah/R/processing.R | 12 ++++- erah-1.1.1/erah/R/zzz.R | 2 erah-1.1.1/erah/build/vignette.rds |binary erah-1.1.1/erah/data/mslib.rda |binary erah-1.1.1/erah/inst/NEWS | 4 + erah-1.1.1/erah/inst/doc/eRahManual.Rnw |only erah-1.1.1/erah/inst/doc/eRahManual.pdf |binary erah-1.1.1/erah/man/alignComp.Rd | 2 erah-1.1.1/erah/man/computeRIerror.Rd | 6 +- erah-1.1.1/erah/man/createdt.Rd | 2 erah-1.1.1/erah/man/deconvolveComp.Rd | 4 - erah-1.1.1/erah/man/identifyComp.Rd | 2 erah-1.1.1/erah/man/newExp.Rd | 4 - erah-1.1.1/erah/man/plotAlign.Rd | 2 erah-1.1.1/erah/man/plotChr.Rd | 2 erah-1.1.1/erah/man/plotProfile.Rd | 2 erah-1.1.1/erah/man/plotSpectra.Rd | 2 erah-1.1.1/erah/man/recMissComp.Rd | 2 erah-1.1.1/erah/man/setAlPar.Rd | 2 erah-1.1.1/erah/man/setDecPar.Rd | 2 erah-1.1.1/erah/vignettes/eRahManual.Rnw |only erah-1.1.1/erah/vignettes/eem.pdf |only 31 files changed, 115 insertions(+), 87 deletions(-)
Title: Testing Neighbor Effects in Marker-Based Regressions
Description: To incorporate neighbor genotypic identity into genome-wide association studies, the package provides a set of functions for variation partitioning and association mapping. The theoretical background of the method is described in Sato et al. (2019) <doi:10.1101/845735>.
Author: Yasuhiro Sato [aut, cre] (<https://orcid.org/0000-0002-6466-723X>),
Eiji Yamamoto [aut],
Kentaro K. Shimizu [aut] (<https://orcid.org/0000-0002-6483-1781>),
Atsushi J. Nagano [aut] (<https://orcid.org/0000-0001-7891-5049>)
Maintainer: Yasuhiro Sato <sato.yasuhiro.36c@kyoto-u.jp>
Diff between rNeighborGWAS versions 1.0.0 dated 2020-04-15 and 1.2.0 dated 2020-07-06
DESCRIPTION | 16 +-- MD5 | 58 +++++++----- NAMESPACE | 2 R/calc_PVEnei.R | 71 ++++++-------- R/delta_PVE.R | 7 - R/gaston2neiGWAS.R |only R/min_dist.R | 34 +++++-- R/neiGWAS.R | 52 +++++----- R/nei_coval.R | 90 ++++++++++++------ R/nei_lmm.R |only R/nei_simu.R | 18 ++- R/qtl_pheno_simu.R | 35 ++++--- R/rNeighborGWAS-package.R | 2 R/w.R | 11 +- README.md |only inst/doc/rNeighborGWAS.R | 69 +++++++++++--- inst/doc/rNeighborGWAS.Rmd | 207 ++++++++++++++++++++++++++----------------- inst/doc/rNeighborGWAS.html | 178 ++++++++++++++++++++++++------------ man/calc_PVEnei.Rd | 14 +- man/delta_PVE.Rd | 2 man/gaston2neiGWAS.Rd |only man/min_dist.Rd | 4 man/neiGWAS.Rd | 8 - man/nei_coval.Rd | 18 ++- man/nei_lmm.Rd |only man/nei_simu.Rd | 10 +- man/qtl_pheno_simu.Rd | 26 ++--- man/rNeighborGWAS-package.Rd | 2 man/w.Rd | 4 tests |only vignettes/rNeighborGWAS.Rmd | 207 ++++++++++++++++++++++++++----------------- 31 files changed, 708 insertions(+), 437 deletions(-)
Title: Tables, Labels and Some Useful Functions from Spreadsheets and
'SPSS' Statistics
Description: Package computes and displays tables with support for 'SPSS'-style
labels, multiple and nested banners, weights, multiple-response variables
and significance testing. There are facilities for nice output of tables
in 'knitr', 'Shiny', '*.xlsx' files, R and 'Jupyter' notebooks. Methods
for labelled variables add value labels support to base R functions and to
some functions from other packages. Additionally, the package brings
popular data transformation functions from 'SPSS' Statistics and 'Excel':
'RECODE', 'COUNT', 'COMPUTE', 'DO IF', 'COUNTIF', 'VLOOKUP' and etc.
These functions are very useful for data processing in marketing research
surveys. Package intended to help people to move data
processing from 'Excel' and 'SPSS' to R.
Author: Gregory Demin [aut, cre],
Sebastian Jeworutzki [ctb] (<https://orcid.org/0000-0002-2671-5253>)
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between expss versions 0.10.2 dated 2020-03-25 and 0.10.5 dated 2020-07-06
DESCRIPTION | 8 MD5 | 210 NAMESPACE | 2 NEWS | 355 R/S3_methods.R | 916 R/add_rows.R | 351 R/as_hux.R | 65 R/caption.R | 15 R/compute.R | 22 R/criteria_functions.R | 14 R/custom_tables.R | 2 R/expss_options.R | 351 R/fctr.R | 12 R/html_datatable.R | 11 R/html_table.R | 1077 - R/labels.R | 17 R/selectors.R | 4 R/vlookup.R | 722 R/write_labelled.R | 3 build/vignette.rds |binary inst/doc/examples.R | 636 inst/doc/examples.html |16242 ++++++++--------- inst/doc/labels-support.R | 266 inst/doc/labels-support.html | 1384 - inst/doc/tables-with-labels.R | 950 inst/doc/tables-with-labels.html |12198 ++++++------ inst/doc/xlsx-export.R | 146 inst/doc/xlsx-export.html | 1526 - man/add_rows.Rd | 9 man/as.datatable_widget.Rd | 8 man/compute.Rd | 22 man/criteria.Rd | 14 man/fctr.Rd | 12 man/htmlTable.etable.Rd | 117 man/reexports.Rd | 6 man/tables.Rd | 2 man/var_lab.Rd | 5 man/vars.Rd | 4 man/write_labelled_csv.Rd | 2 tests/testthat.R | 12 tests/testthat/rds/as_hux1.rds |binary tests/testthat/rds/as_hux10.rds |binary tests/testthat/rds/as_hux11.rds |binary tests/testthat/rds/as_hux12.rds |binary tests/testthat/rds/as_hux12single.rds |binary tests/testthat/rds/as_hux12single2.rds |binary tests/testthat/rds/as_hux13.rds |binary tests/testthat/rds/as_hux14.rds |binary tests/testthat/rds/as_hux14_2.rds |binary tests/testthat/rds/as_hux15.rds |binary tests/testthat/rds/as_hux16.rds |binary tests/testthat/rds/as_hux17.rds |binary tests/testthat/rds/as_hux18.rds |binary tests/testthat/rds/as_hux19.rds |binary tests/testthat/rds/as_hux1_caption.rds |binary tests/testthat/rds/as_hux2.rds |binary tests/testthat/rds/as_hux2empty1.rds |binary tests/testthat/rds/as_hux2single1.rds |binary tests/testthat/rds/as_hux3_no_rowgroups_caption.rds |binary tests/testthat/rds/cro_mean_out.txt | 14 tests/testthat/rds/htmlTable1.rds |binary tests/testthat/rds/htmlTable10.rds |binary tests/testthat/rds/htmlTable11.rds |binary tests/testthat/rds/htmlTable12.rds |binary tests/testthat/rds/htmlTable12_no_rowgroups.rds |binary tests/testthat/rds/htmlTable12single.rds |binary tests/testthat/rds/htmlTable12single2.rds |binary tests/testthat/rds/htmlTable13.rds |binary tests/testthat/rds/htmlTable13_1.rds |binary tests/testthat/rds/htmlTable14.rds |binary tests/testthat/rds/htmlTable14_1.rds |binary tests/testthat/rds/htmlTable14_2.rds |binary tests/testthat/rds/htmlTable14_3.rds |binary tests/testthat/rds/htmlTable15.rds |binary tests/testthat/rds/htmlTable16.rds |binary tests/testthat/rds/htmlTable17.rds |binary tests/testthat/rds/htmlTable18.rds |binary tests/testthat/rds/htmlTable19.rds |binary tests/testthat/rds/htmlTable1_caption.rds |binary tests/testthat/rds/htmlTable1_list.rds |binary tests/testthat/rds/htmlTable1_list_norogroups.rds |binary tests/testthat/rds/htmlTable2.rds |binary tests/testthat/rds/htmlTable20.rds |binary tests/testthat/rds/htmlTable21.rds |binary tests/testthat/rds/htmlTable2empty1.rds |binary tests/testthat/rds/htmlTable2single1.rds |binary tests/testthat/rds/htmlTable3.rds |binary tests/testthat/rds/htmlTable3_no_rowgroups.rds |binary tests/testthat/rds/htmlTable3_no_rowgroups_caption.rds |binary tests/testthat/rds/print_etable.txt | 46 tests/testthat/rds/print_etable_2.txt | 92 tests/testthat/rds/print_etable_custom_label.txt | 46 tests/testthat/rds/print_etable_digits2.txt | 46 tests/testthat/rds/print_etable_digits2_2.txt | 92 tests/testthat/rds/print_etable_raw.txt | 36 tests/testthat/rds/print_etable_rnotebook.txt | 410 tests/testthat/rds/print_etable_rnotebook_caption.txt | 207 tests/testthat/rds/print_etable_single_column.txt | 40 tests/testthat/rds/print_etable_unrounded.txt | 46 tests/testthat/rds/print_etable_unrounded2.txt | 92 tests/testthat/rds/print_etable_zero.txt | 2 tests/testthat/rds/print_etable_zero_columns.txt | 2 tests/testthat/rds/print_etable_zero_rows.txt | 12 tests/testthat/test_huxtable.R | 49 tests/testthat/test_labels.R | 13 tests/testthat/test_split_labels.R | 720 106 files changed, 19857 insertions(+), 19826 deletions(-)
Title: Data Science for Psychologists
Description: All datasets and functions required for the examples and exercises of the book "Data Science for Psychologists" (by Hansjoerg Neth, Konstanz University, 2020), available at <https://bookdown.org/hneth/ds4psy/>. The book and course introduce principles and methods of data science to students of psychology and other biological or social sciences. The 'ds4psy' package primarily provides datasets, but also functions for data generation and manipulation (e.g., of text and time data) and graphics that are used in the book and its exercises. All functions included in 'ds4psy' are designed to be instructive and entertaining, rather than elegant or efficient.
Author: Hansjoerg Neth [aut, cre] (<https://orcid.org/0000-0001-5427-3141>)
Maintainer: Hansjoerg Neth <h.neth@uni.kn>
Diff between ds4psy versions 0.3.0 dated 2020-06-15 and 0.4.0 dated 2020-07-06
DESCRIPTION | 10 MD5 | 129 ++++--- NAMESPACE | 3 NEWS.md | 111 ++---- R/data.R | 430 ++++++++++++++++--------- R/data_fun.R | 79 +++- R/plot_fun.R | 19 - R/text_fun.R | 18 - R/time_fun.R | 824 ++++++++++++++++++++++++++++++++++++++++++++----- R/util_fun.R | 22 - README.md | 239 +++----------- data/dt_10.rda |only data/exp_num_dt.rda |only data/fruits.rda |binary inst/CITATION | 4 inst/WORDLIST | 12 inst/doc/ds4psy.R | 2 inst/doc/ds4psy.Rmd | 4 inst/doc/ds4psy.html | 294 ++--------------- man/Bushisms.Rd | 2 man/Trumpisms.Rd | 2 man/change_time.Rd |only man/change_tz.Rd |only man/countries.Rd | 2 man/cur_date.Rd | 35 +- man/cur_time.Rd | 27 + man/data_1.Rd | 2 man/data_2.Rd | 2 man/data_t1.Rd | 2 man/data_t1_de.Rd | 2 man/data_t1_tab.Rd | 2 man/data_t2.Rd | 2 man/data_t3.Rd | 2 man/data_t4.Rd | 2 man/dt_10.Rd |only man/exp_num_dt.Rd |only man/exp_wide.Rd | 2 man/falsePosPsy_all.Rd | 2 man/fame.Rd | 2 man/flowery.Rd | 2 man/fruits.Rd | 2 man/is.wholenumber.Rd | 12 man/is_leap_year.Rd |only man/outliers.Rd | 2 man/pi_100k.Rd | 2 man/plot_n.Rd | 17 - man/posPsy_AHI_CESD.Rd | 2 man/posPsy_long.Rd | 2 man/posPsy_p_info.Rd | 2 man/posPsy_wide.Rd | 2 man/sample_date.Rd | 2 man/sample_time.Rd | 43 ++ man/t3.Rd | 2 man/t4.Rd | 2 man/t_1.Rd | 2 man/t_2.Rd | 2 man/t_3.Rd | 2 man/t_4.Rd | 2 man/table6.Rd | 2 man/table7.Rd | 2 man/table8.Rd | 2 man/tb.Rd | 6 man/what_date.Rd | 66 +++ man/what_day.Rd | 23 - man/what_month.Rd | 12 man/what_time.Rd | 53 ++- man/what_week.Rd | 21 - man/what_year.Rd | 10 vignettes/ds4psy.Rmd | 4 69 files changed, 1674 insertions(+), 919 deletions(-)
Title: Clustering of Weighted Data
Description: Clusters state sequences and weighted data. It provides an optimized weighted PAM algorithm as well as functions for aggregating replicated cases, computing cluster quality measures for a range of clustering solutions and plotting clusters of state sequences.
Author: Matthias Studer [aut, cre]
Maintainer: Matthias Studer <matthias.studer@unige.ch>
Diff between WeightedCluster versions 1.4 dated 2019-03-21 and 1.4-1 dated 2020-07-06
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 6 ++++++ R/clusterquality.R | 2 +- build/vignette.rds |binary inst/doc/WeightedCluster.pdf |binary inst/doc/WeightedClusterFR.pdf |binary inst/doc/WeightedClusterPreview.pdf |binary src/init.c | 4 ++-- 9 files changed, 21 insertions(+), 15 deletions(-)
More information about WeightedCluster at CRAN
Permanent link
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018,
<doi:10.1080/00031305.2017.1375990>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 1.0.4.6 dated 2020-04-09 and 1.0.5 dated 2020-07-06
ChangeLog | 836 ++++++++++++++++------------- DESCRIPTION | 13 MD5 | 60 +- R/Rcpp.package.skeleton.R | 11 README.md | 38 - build/vignette.rds |binary inst/NEWS.Rd | 40 + inst/bib/Rcpp.bib | 72 ++ inst/doc/Rcpp-FAQ.pdf |binary inst/doc/Rcpp-attributes.pdf |binary inst/doc/Rcpp-extending.pdf |binary inst/doc/Rcpp-introduction.pdf |binary inst/doc/Rcpp-jss-2011.pdf |binary inst/doc/Rcpp-libraries.Rnw |only inst/doc/Rcpp-libraries.pdf |only inst/doc/Rcpp-modules.pdf |binary inst/doc/Rcpp-package.pdf |binary inst/doc/Rcpp-quickref.pdf |binary inst/doc/Rcpp-sugar.pdf |binary inst/include/Rcpp/DataFrame.h | 2 inst/include/Rcpp/String.h | 9 inst/include/Rcpp/config.h | 8 inst/include/Rcpp/exceptions.h | 4 inst/include/Rcpp/macros/debug.h | 36 - inst/include/Rcpp/macros/macros.h | 19 inst/include/Rcpp/sugar/functions/sample.h | 4 inst/include/RcppCommon.h | 19 inst/tinytest/test_exceptions.R | 2 src/api.cpp | 8 tests/tinytest.R | 8 vignettes/Rcpp-libraries.Rnw |only vignettes/pdf/Rcpp-jss-2011.pdf |binary vignettes/pdf/Rcpp-libraries.pdf |only 33 files changed, 707 insertions(+), 482 deletions(-)
Title: Parsing Command-Line Arguments and Simple Variable Interpolation
Description: This is a command-line argument parser which wraps the
powerful Perl module Getopt::Long and with some adaptations for easier use
in R. It also provides a simple way for variable interpolation in R.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between GetoptLong versions 1.0.1 dated 2020-07-05 and 1.0.2 dated 2020-07-06
DESCRIPTION | 8 +++---- MD5 | 12 +++++----- inst/doc/GetoptLong.R | 39 ++++++++++++++++++++++++++--------- inst/doc/GetoptLong.Rmd | 39 ++++++++++++++++++++++++++--------- inst/doc/GetoptLong.html | 12 +++++----- inst/doc/variable_interpolation.html | 10 ++++---- vignettes/GetoptLong.Rmd | 39 ++++++++++++++++++++++++++--------- 7 files changed, 111 insertions(+), 48 deletions(-)