Title: Identification and Classification of the Most Influential Nodes
Description: Provides functions for the identification, classification, and
ranking of influential nodes and candidate features from network and omics
data. The package implements the Integrated Value of Influence (IVI) for
integrative network centrality analysis, the SIR-based Influence Ranking
(SIRIR) model for unsupervised influence ranking, and the Experimental
data-based Integrative Ranking (ExIR) model for prioritizing candidate
driver, biomarker, and mediator features from experimental omics data.
Functions are provided for network reconstruction from adjacency matrices
and data frames, topological analysis, centrality calculation, assessment
of associations between centrality measures, and conditional probability
analysis. ExIR supports bulk and single-cell omics data, including matrices,
sparse matrices, data frames, tibbles, and Seurat objects.
Author: Adrian Salavaty [aut, cre] ,
Mirana Ramialison [ths],
Peter D. Currie [ths]
Maintainer: Adrian Salavaty <abbas.salavaty@gmail.com>
Diff between influential versions 2.3.1 dated 2026-05-28 and 2.3.2 dated 2026-08-23
DESCRIPTION | 7 MD5 | 28 NEWS.md | 10 R/data.R | 6 README.md | 241 ++++-- build/partial.rdb |only inst/CITATION | 7 inst/doc/Vignettes.R | 104 +- inst/doc/Vignettes.Rmd | 210 ++++- inst/doc/Vignettes.html | 1392 ++++++++++++++++++++++++++++++-------- man/centrality.measures.Rd | 2 man/coexpression.adjacency.Rd | 2 man/coexpression.data.Rd | 2 vignettes/Vignettes.Rmd | 210 ++++- vignettes/figures |only vignettes/influentialVignette.css | 1165 ++++++++++++++++++++++++++----- 16 files changed, 2648 insertions(+), 738 deletions(-)
Title: A Traceability Focused Grammar of Clinical Data Summary
Description: A traceability focused tool created to simplify the data manipulation necessary to create clinical summaries.
Author: Eli Miller [aut] ,
Mike Stackhouse [aut, cre] ,
Ashley Tarasiewicz [aut],
Nathan Kosiba [ctb] ,
Sadchla Mascary [ctb],
Andrew Bates [ctb],
Shiyu Chen [ctb],
Oleksii Mikryukov [ctb],
Atorus Research LLC [cph]
Maintainer: Mike Stackhouse <mike.stackhouse@atorusresearch.com>
Diff between Tplyr versions 1.3.3 dated 2026-06-30 and 1.4.0 dated 2026-08-23
DESCRIPTION | 6 MD5 | 50 +++--- NEWS.md | 9 + R/count.R | 2 R/desc.R | 17 +- R/gather_defaults.R | 2 R/num_fmt.R | 15 + R/precision.R | 33 ++++ R/set_format_strings.R | 23 ++ R/zzz.R | 3 inst/doc/Tplyr.html | 12 - inst/doc/denom.html | 6 inst/doc/desc_layer_formatting.R | 14 + inst/doc/desc_layer_formatting.Rmd | 27 +++ inst/doc/desc_layer_formatting.html | 295 ++++++++++++++++++++++++------------ inst/doc/metadata.html | 2 inst/doc/options.R | 26 +++ inst/doc/options.Rmd | 37 ++++ inst/doc/options.html | 250 ++++++++++++++++++++---------- man/set_format_strings.Rd | 24 ++ tests/testthat/test-count.R | 33 ++++ tests/testthat/test-opts.R | 51 ++++++ tests/testthat/test-precision.R | 113 +++++++++++++ vignettes/desc_layer_formatting.Rmd | 27 +++ vignettes/options.Rmd | 37 ++++ vignettes/tplyr_options.csv | 1 26 files changed, 882 insertions(+), 233 deletions(-)
Title: A 'shiny' Package for Data Analysis
Description: Provides a 'shiny' application with a user-friendly interface
for interactive data analysis. It supports exploratory data analysis
through descriptive statistics, data visualization, statistical
tests (e.g., normality assessment), linear modeling, data
import, transformation and reporting. For more details see Shapiro and Wilk
(1965) <doi:10.2307/2333709>.
Author: Luis Gustavo Schuck [aut, cre]
Maintainer: Luis Gustavo Schuck <luisgustavoschuck@yahoo.com.br>
Diff between spada versions 0.1.7 dated 2026-07-10 and 0.1.8 dated 2026-08-23
spada-0.1.7/spada/man/figures/spada_loading_0.1.3.png |only spada-0.1.8/spada/DESCRIPTION | 6 spada-0.1.8/spada/MD5 | 78 - spada-0.1.8/spada/NAMESPACE | 2 spada-0.1.8/spada/NEWS.md | 22 spada-0.1.8/spada/R/calculate_cols_module.R | 33 spada-0.1.8/spada/R/duplicates_module.R | 7 spada-0.1.8/spada/R/exploratory_module.R | 15 spada-0.1.8/spada/R/filter_rows_module.R | 39 spada-0.1.8/spada/R/groupby_module.R | 3 spada-0.1.8/spada/R/lm_module.R | 17 spada-0.1.8/spada/R/missing_module.R |only spada-0.1.8/spada/R/navbar_df_info_module.R | 2 spada-0.1.8/spada/R/sidebar_module.R | 7 spada-0.1.8/spada/R/spada.R | 8 spada-0.1.8/spada/R/spada_server.R | 3 spada-0.1.8/spada/R/spada_themes.R | 299 +++-- spada-0.1.8/spada/R/spada_ui.R | 1 spada-0.1.8/spada/R/utils.R | 613 ++++++----- spada-0.1.8/spada/R/zzz.R | 14 spada-0.1.8/spada/README.md | 6 spada-0.1.8/spada/inst/doc/spada.html | 25 spada-0.1.8/spada/man/figures/data.png |binary spada-0.1.8/spada/man/figures/export.png |binary spada-0.1.8/spada/man/figures/highlights.png |binary spada-0.1.8/spada/man/figures/import.png |binary spada-0.1.8/spada/man/figures/metadata.png |binary spada-0.1.8/spada/man/figures/navbar_active_dataset.png |binary spada-0.1.8/spada/man/figures/overview.png |binary spada-0.1.8/spada/man/figures/spada_analysis_exploratory.png |binary spada-0.1.8/spada/man/figures/spada_config.png |binary spada-0.1.8/spada/man/figures/spada_data_metadata.png |binary spada-0.1.8/spada/man/figures/spada_data_overview.png |binary spada-0.1.8/spada/man/figures/spada_edit.png |binary spada-0.1.8/spada/man/figures/spada_home.png |binary spada-0.1.8/spada/man/figures/spada_home2.png |binary spada-0.1.8/spada/man/figures/spada_home3.png |binary spada-0.1.8/spada/man/figures/spada_loading.png |only spada-0.1.8/spada/man/figures/spada_output.png |binary spada-0.1.8/spada/man/figures/spada_output_exported.png |binary spada-0.1.8/spada/tests/testthat/test-missing_module.R |only spada-0.1.8/spada/tests/testthat/test-utils.R | 25 42 files changed, 796 insertions(+), 429 deletions(-)
Title: An Accessible Interface for Stock-and-Flow Modelling
Description: Stock-and-flow models are a computational method from the
field of system dynamics. They represent how systems change over time
and are mathematically equivalent to ordinary differential equations.
'sdbuildR' (system dynamics builder) provides an intuitive interface
for constructing stock-and-flow models without requiring extensive
domain knowledge. Models can quickly be simulated and revised,
supporting iterative development. 'sdbuildR' simulates models in 'R'
and 'Julia', and supports computationally intensive ensemble
simulations. Additionally, 'sdbuildR' can import models created in
'Insight Maker' (<https://insightmaker.com/>).
Author: Kyra Caitlin Evers [aut, cre, cph] ,
STIX Fonts Project Authors [ctb, cph] , SIL Open Font License 1.1)
Maintainer: Kyra Caitlin Evers <kyra.c.evers@gmail.com>
This is a re-admission after prior archival of version 2.2.2 dated 2026-07-17
Diff between sdbuildR versions 2.2.2 dated 2026-07-17 and 2.2.3 dated 2026-08-23
DESCRIPTION | 6 MD5 | 141 NEWS.md | 30 R/aaa.R | 26 R/compile_script.R | 1394 +-- R/ensemble.R | 27 R/import_insightmaker.R | 5 R/insightmaker_conv.R | 356 R/plot.R | 28 R/scripts.R | 692 - R/sdbuildR-methods.R |only R/sim_methods.R | 375 R/simulate.R | 1 R/sysdata.rda |binary R/templates.R | 14 R/update.R | 1 R/use_julia.R | 334 R/utils.R | 4248 +++++----- inst/Project.toml | 13 inst/init.jl | 4 inst/setup.jl | 2 man/as.data.frame.ensemble_stockflow.Rd | 23 man/ensemble.Rd | 14 man/export_plot.Rd | 41 man/install_julia_env.Rd | 6 man/plot.simulate_stockflow.Rd | 2 man/plot.verify_stockflow.Rd | 11 man/sdbuildR-as.data.frame.Rd |only man/sdbuildR-head-tail.Rd |only man/sdbuildR-plot.Rd |only man/sdbuildR-print.Rd |only man/sdbuildR-summary.Rd |only man/simulate.stockflow.Rd | 105 man/update.stockflow.Rd | 433 - man/url_to_insightmaker.Rd | 2 man/use_julia.Rd | 2 tests/testthat/_snaps/plot_ensemble_stockflow/ens-alpha-named.png |binary tests/testthat/_snaps/plot_ensemble_stockflow/ens-alpha-roles-named.png |binary tests/testthat/_snaps/plot_ensemble_stockflow/ens-filtered-condition-2.png |binary tests/testthat/_snaps/plot_ensemble_stockflow/ens-lw-roles.png |binary tests/testthat/_snaps/plot_ensemble_stockflow/ens-lw-scalar.png |binary tests/testthat/_snaps/plot_ensemble_stockflow/ens-sims-default.png |binary tests/testthat/_snaps/plot_ensemble_stockflow/ens-summary-default.png |binary tests/testthat/_snaps/plot_simulate_stockflow/sim-constants-filtered-vars.png |binary tests/testthat/_snaps/plot_simulate_stockflow/sim-custom-colors.png |binary tests/testthat/_snaps/plot_simulate_stockflow/sim-custom-palette.png |binary tests/testthat/_snaps/plot_simulate_stockflow/sim-only-stocks-false.png |binary tests/testthat/_snaps/plot_simulate_stockflow/sim-single-var-legend.png |binary tests/testthat/_snaps/plot_simulate_stockflow/sim-single-variable.png |binary tests/testthat/_snaps/plot_simulate_stockflow/sim-with-constants.png |binary tests/testthat/_snaps/plot_simulate_stockflow/sim-without-constants.png |binary tests/testthat/_snaps/plot_simulate_stockflow/sim-wrap-width-narrow.png |binary tests/testthat/_snaps/plot_verify_stockflow/verify-custom-colors.png |binary tests/testthat/_snaps/plot_verify_stockflow/verify-custom-font-family.png |binary tests/testthat/_snaps/plot_verify_stockflow/verify-custom-palette.png |binary tests/testthat/_snaps/plot_verify_stockflow/verify-nr-label-intersection.png |binary tests/testthat/_snaps/plot_verify_stockflow/verify-show_legend-false.png |binary tests/testthat/_snaps/plot_verify_stockflow/verify-single-cond-n1.png |binary tests/testthat/_snaps/plot_verify_stockflow/verify-status-fail-only.png |binary tests/testthat/_snaps/plot_verify_stockflow/verify-status-pass-only.png |binary tests/testthat/_snaps/plot_verify_stockflow/verify-wrap-width-narrow.png |binary tests/testthat/helper.R | 11 tests/testthat/test-cache-invalidation.R | 1 tests/testthat/test-ensemble-jl.R | 1672 +-- tests/testthat/test-ensemble-r.R | 1029 +- tests/testthat/test-fonts.R | 426 - tests/testthat/test-insightmaker.R | 729 + tests/testthat/test-julia_conv_ast.R | 1 tests/testthat/test-layout-invariants.R | 1 tests/testthat/test-plot_ensemble_stockflow.R | 26 tests/testthat/test-plot_simulate_stockflow.R | 29 tests/testthat/test-solvers.R |only tests/testthat/test-templates.R | 4 tests/testthat/test-use_julia.R | 168 tests/testthat/test-verify.R | 92 75 files changed, 6631 insertions(+), 5894 deletions(-)
Title: Phonetic Spelling Algorithms
Description: Provides a collection of phonetic algorithms including
Soundex, Metaphone, NYSIIS, Caverphone, and others. The package is
documented in <doi:10.18637/jss.v095.i08>.
Author: James Howard [aut, cre] ,
Kyle Haynes [ctb],
Amanda Hood [ctb],
Os Keyes [ctb]
Maintainer: James Howard <jh@jameshoward.us>
Diff between phonics versions 1.3.10 dated 2021-07-11 and 1.4.0 dated 2026-08-23
phonics-1.3.10/phonics/tests/test-all.R |only phonics-1.4.0/phonics/DESCRIPTION | 21 phonics-1.4.0/phonics/MD5 | 141 ++-- phonics-1.4.0/phonics/NAMESPACE | 7 phonics-1.4.0/phonics/NEWS.md |only phonics-1.4.0/phonics/R/RcppExports.R | 4 phonics-1.4.0/phonics/R/caverphone.R | 7 phonics-1.4.0/phonics/R/cologne.R | 118 ++- phonics-1.4.0/phonics/R/lein.R | 17 phonics-1.4.0/phonics/R/metaphone.R | 24 phonics-1.4.0/phonics/R/mra.R | 24 phonics-1.4.0/phonics/R/nysiis.R | 303 ++++----- phonics-1.4.0/phonics/R/onca.R | 31 phonics-1.4.0/phonics/R/phonex.R | 17 phonics-1.4.0/phonics/R/phonics-package.R |only phonics-1.4.0/phonics/R/phonics.R | 66 -- phonics-1.4.0/phonics/R/rogerroot.R | 85 +- phonics-1.4.0/phonics/R/soundex.R | 28 phonics-1.4.0/phonics/R/statcan.R | 13 phonics-1.4.0/phonics/R/validate.R |only phonics-1.4.0/phonics/README.md | 103 ++- phonics-1.4.0/phonics/build/partial.rdb |only phonics-1.4.0/phonics/build/vignette.rds |binary phonics-1.4.0/phonics/inst/CITATION | 2 phonics-1.4.0/phonics/inst/doc/phonics.R | 3 phonics-1.4.0/phonics/inst/doc/phonics.Rmd | 66 +- phonics-1.4.0/phonics/inst/doc/phonics.html | 313 +++++----- phonics-1.4.0/phonics/man/caverphone.Rd | 28 phonics-1.4.0/phonics/man/cologne.Rd | 34 - phonics-1.4.0/phonics/man/lein.Rd | 28 phonics-1.4.0/phonics/man/metaphone.Rd | 44 - phonics-1.4.0/phonics/man/mra.Rd | 28 phonics-1.4.0/phonics/man/nysiis.Rd | 45 - phonics-1.4.0/phonics/man/onca.Rd | 39 - phonics-1.4.0/phonics/man/phonex.Rd | 28 phonics-1.4.0/phonics/man/phonics-package.Rd |only phonics-1.4.0/phonics/man/phonics.Rd | 88 +- phonics-1.4.0/phonics/man/rogerroot.Rd | 33 - phonics-1.4.0/phonics/man/soundex.Rd | 48 - phonics-1.4.0/phonics/man/statcan.Rd | 28 phonics-1.4.0/phonics/src/metaphone.cpp | 247 +++++-- phonics-1.4.0/phonics/src/soundex.cpp | 121 ++- phonics-1.4.0/phonics/tests/testthat.R |only phonics-1.4.0/phonics/tests/testthat/cologne.csv | 2 phonics-1.4.0/phonics/tests/testthat/helper-encoders.R |only phonics-1.4.0/phonics/tests/testthat/lein.csv | 4 phonics-1.4.0/phonics/tests/testthat/metaphone.csv | 2 phonics-1.4.0/phonics/tests/testthat/mra-compare.csv | 4 phonics-1.4.0/phonics/tests/testthat/mra-encode.csv | 2 phonics-1.4.0/phonics/tests/testthat/nysiis-modified.csv | 15 phonics-1.4.0/phonics/tests/testthat/nysiis.csv | 3 phonics-1.4.0/phonics/tests/testthat/onca-modified-refined.csv | 2 phonics-1.4.0/phonics/tests/testthat/onca-modified.csv | 2 phonics-1.4.0/phonics/tests/testthat/onca-refined.csv | 2 phonics-1.4.0/phonics/tests/testthat/onca.csv | 2 phonics-1.4.0/phonics/tests/testthat/phonex.csv | 2 phonics-1.4.0/phonics/tests/testthat/phonics.csv | 8 phonics-1.4.0/phonics/tests/testthat/rogerroot.csv | 6 phonics-1.4.0/phonics/tests/testthat/soundex-refined.csv | 4 phonics-1.4.0/phonics/tests/testthat/soundex.csv | 4 phonics-1.4.0/phonics/tests/testthat/statcan.csv | 2 phonics-1.4.0/phonics/tests/testthat/test-caverphone.R | 86 -- phonics-1.4.0/phonics/tests/testthat/test-cologne.R | 44 - phonics-1.4.0/phonics/tests/testthat/test-encoder-contracts.R |only phonics-1.4.0/phonics/tests/testthat/test-fixtures.R |only phonics-1.4.0/phonics/tests/testthat/test-lein.R | 42 - phonics-1.4.0/phonics/tests/testthat/test-metaphone.R | 50 - phonics-1.4.0/phonics/tests/testthat/test-mra.R | 103 +-- phonics-1.4.0/phonics/tests/testthat/test-nysiis.R | 86 -- phonics-1.4.0/phonics/tests/testthat/test-onca.R | 189 ------ phonics-1.4.0/phonics/tests/testthat/test-phonex.R | 43 - phonics-1.4.0/phonics/tests/testthat/test-phonics.R | 89 ++ phonics-1.4.0/phonics/tests/testthat/test-rogerroot.R | 42 - phonics-1.4.0/phonics/tests/testthat/test-soundex.R | 99 --- phonics-1.4.0/phonics/tests/testthat/test-spec-conformance.R |only phonics-1.4.0/phonics/tests/testthat/test-statcan.R | 44 - phonics-1.4.0/phonics/vignettes/phonics.Rmd | 66 +- 77 files changed, 1557 insertions(+), 1724 deletions(-)
Title: Download and Process Brazilian Education Data from INEP
Description: Download and process public education data from INEP (Instituto
Nacional de Estudos e Pesquisas Educacionais Anísio Teixeira). Provides
functions to access microdata from the School Census (Censo Escolar),
ENEM (Exame Nacional do Ensino Médio), SAEB (Sistema de Avaliação da
Educação Básica), Higher Education Census (Censo da Educação Superior),
ENADE (Exame Nacional de Desempenho dos Estudantes),
ENCCEJA (Exame Nacional para Certificação de Competências de Jovens e Adultos),
IDD (Indicador de Diferença entre os Desempenhos Observado e Esperado),
CPC (Conceito Preliminar de Curso),
IGC (Índice Geral de Cursos),
CAPES graduate education data,
FUNDEB (Fundo de Manutencao e Desenvolvimento da Educacao Basica),
IDEB (Índice de Desenvolvimento da Educação Básica),
and other educational datasets. Returns data in
tidy format ready for analysis. Data source: INEP Open Data Portal
<https://www.gov.br/inep/pt-br/acesso-a-informacao/dados-abertos>.
Author: Sidney da Silva Pereira Bissoli [aut, cre]
Maintainer: Sidney da Silva Pereira Bissoli <sbissoli76@gmail.com>
Diff between educabR versions 1.0.0 dated 2026-05-27 and 1.1.0 dated 2026-08-23
DESCRIPTION | 6 MD5 | 38 NEWS.md | 32 R/get-ideb.R | 188 ++++ R/utils-download.R | 94 -- README.md | 32 build/vignette.rds |binary inst/doc/getting-started.R | 8 inst/doc/getting-started.Rmd | 8 inst/doc/getting-started.html | 18 inst/doc/mapping-education-with-geobr.Rmd | 4 inst/doc/mapping-education-with-geobr.html | 7 man/fetch_ideb_file.Rd |only man/get_ideb.Rd | 28 tests/testthat/test-get-ideb.R | 1191 ++++++++++++++++------------- tests/testthat/test-get-pipelines-excel.R | 36 tests/testthat/test-utils-cache.R | 4 tests/testthat/test-utils-download.R | 2 tests/testthat/test-year-discovery.R |only vignettes/getting-started.Rmd | 8 vignettes/mapping-education-with-geobr.Rmd | 4 21 files changed, 1061 insertions(+), 647 deletions(-)
Title: Empirical Bayes Estimation Strategies
Description: Empirical Bayes methods for learning prior distributions from data.
An unknown prior distribution (g) has yielded (unobservable) parameters, each of
which produces a data point from a parametric exponential family (f). The goal
is to estimate the unknown prior ("g-modeling") by deconvolution and Empirical
Bayes methods. Details and examples are in the paper by Narasimhan and Efron
(2020, <doi:10.18637/jss.v094.i11>).
Author: Bradley Efron [aut],
Balasubramanian Narasimhan [aut, cre]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Diff between deconvolveR versions 1.2-1 dated 2020-08-29 and 1.2-2 dated 2026-08-23
DESCRIPTION | 8 MD5 | 22 +- NEWS.md | 8 R/deconv.R | 6 R/deconvolveR-package.R | 5 README.md | 14 + build/vignette.rds |binary inst/doc/deconvolution.R | 6 inst/doc/deconvolution.html | 384 ++++++++++++++++++++++++++------------------ man/deconv.Rd | 6 man/deconvolveR-package.Rd | 19 ++ man/figures |only 12 files changed, 289 insertions(+), 189 deletions(-)
Title: Companion to the Book "The R Software"
Description: Functions and datasets for readers of the book
"The R Software: Fundamentals of Programming and Statistical
Analysis" by Lafaye de Micheaux, Drouilhet and Liquet
(2013) <doi:10.1007/978-1-4614-9020-3>.
Author: Pierre Lafaye De Micheaux [aut, cre],
Remy Drouilhet [aut],
Benoit Liquet [aut]
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
This is a re-admission after prior archival of version 1.0.2 dated 2018-05-10
Diff between TRSbook versions 1.0.2 dated 2018-05-10 and 1.0.4 dated 2026-08-23
DESCRIPTION | 28 +++++++++++++++++++--------- MD5 | 34 +++++++++++++++++----------------- R/arrowaxis.R | 2 ++ R/barchart.R | 5 +++-- R/camembert.R | 3 ++- R/flashy.plot.R | 2 ++ inst/CITATION | 35 +++++++++++++++++++---------------- man/BIRTH.WEIGHT.Rd | 2 +- man/BMI.CHILD.Rd | 2 +- man/INFARCTION.Rd | 2 +- man/INTIMA.MEDIA.Rd | 2 +- man/NUTRIELDERLY.Rd | 2 +- man/TRSbook.Rd | 3 +-- man/VectorAddr.Rd | 2 +- man/arrowaxis.Rd | 4 ++++ man/getaddr.Rd | 6 +++--- man/writeaddr.Rd | 6 +++--- src/getaddr.c | 38 +++++++++++++++++++++++++++----------- 18 files changed, 108 insertions(+), 70 deletions(-)
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt' (<DOI:10.32614/CRAN.package.mlt>, <DOI:10.32614/CRAN.package.mlt.docreg>).
Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Barbanti and Hothorn, 2022,
<DOI:10.1093/biostatistics/kxac048>) and a tutorial explains applications in survival analysis
(Siegfried et al., 2025, <DOI:10.48550/arXiv.2402.06428>). Multivariate conditional transformation models
(Klein et al, 2022, <DOI:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023,
<DOI:10.108 [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Luisa Barbanti [ctb] ,
Sandra Siegfried [aut] ,
Lucas Kook [aut] ,
Susanne Dandl [ctb] ,
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 1.4-4 dated 2026-07-16 and 1.4-5 dated 2026-08-23
DESCRIPTION | 31 ++++++++++++++++--------------- MD5 | 42 +++++++++++++++++++++--------------------- R/methods.R | 5 +++-- R/mmlt.R | 5 ++++- build/partial.rdb |binary inst/NEWS.Rd | 10 ++++++++++ inst/doc/NAMI.R | 2 +- inst/doc/NAMI.Rnw | 2 +- inst/doc/NAMI.pdf |binary inst/doc/mtram.R | 2 +- inst/doc/mtram.Rnw | 2 +- inst/doc/mtram.pdf |binary inst/doc/survtram.pdf |binary inst/doc/tram.R | 2 +- inst/doc/tram.Rnw | 2 +- inst/doc/tram.pdf |binary man/tram-methods.Rd | 16 +++++++++++----- tests/bugfixes.R | 10 ++++++++++ tests/mmlt-interface.R | 41 +++++++++++++++++++++++------------------ vignettes/NAMI.Rnw | 2 +- vignettes/mtram.Rnw | 2 +- vignettes/tram.Rnw | 2 +- 22 files changed, 107 insertions(+), 71 deletions(-)
Title: Singular Linear Models for Longitudinal Data
Description: Fits singular linear models to longitudinal data. Singular linear
models are useful when the number, or timing, of longitudinal observations
may be informative about the observations themselves. They are described
in Farewell (2010) <doi:10.1093/biomet/asp068>, and are extensions of the
linear increments model <doi:10.1111/j.1467-9876.2007.00590.x> to general
longitudinal data.
Author: Daniel Farewell [aut, cre]
Maintainer: Daniel Farewell <farewelld@cardiff.ac.uk>
Diff between slim versions 0.1.1 dated 2017-05-15 and 0.1.2 dated 2026-08-23
slim-0.1.1/slim/man/slim.methods.Rd |only slim-0.1.2/slim/DESCRIPTION | 13 ++++++----- slim-0.1.2/slim/MD5 | 30 ++++++++++++++------------ slim-0.1.2/slim/NEWS.md | 5 +--- slim-0.1.2/slim/R/methods.R | 30 +++++++++----------------- slim-0.1.2/slim/R/slim-package.R |only slim-0.1.2/slim/R/slim.R | 19 ---------------- slim-0.1.2/slim/README.md |only slim-0.1.2/slim/build/vignette.rds |binary slim-0.1.2/slim/data/dialysis.rda |only slim-0.1.2/slim/inst/doc/slim.R | 36 ++++++++++++++++---------------- slim-0.1.2/slim/inst/doc/slim.pdf |binary slim-0.1.2/slim/man/dialysis.Rd | 6 +++-- slim-0.1.2/slim/man/fit_slim.Rd | 2 - slim-0.1.2/slim/man/list_covariances.Rd | 2 - slim-0.1.2/slim/man/print.slim.Rd | 14 ++++++++---- slim-0.1.2/slim/man/slim-package.Rd | 7 +++++- slim-0.1.2/slim/man/slim.Rd | 3 -- 18 files changed, 77 insertions(+), 90 deletions(-)
Title: Probabilistic Efficiency Analysis Using Explainable Artificial
Intelligence
Description: Provides a probabilistic framework that integrates Data Envelopment
Analysis (DEA) (Banker et al., 1984) <doi:10.1287/mnsc.30.9.1078> with machine
learning classifiers (Kuhn, 2008) <doi:10.18637/jss.v028.i05> to estimate both the
(in)efficiency status and the probability of efficiency for decision-making
units. The approach trains predictive models on DEA-derived efficiency labels
(Charnes et al., 1985) <doi:10.1016/0304-4076(85)90133-2>, enabling explainable
artificial intelligence (XAI) workflows with global and local interpretability
tools, including permutation importance (Molnar et al., 2018) <doi:10.21105/joss.00786>,
Shapley value explanations (Strumbelj & Kononenko, 2014) <doi:10.1007/s10115-013-0679-x>,
and sensitivity analysis (Cortez, 2011) <https://CRAN.R-project.org/package=rminer>.
The framework also supports probability-threshold peer selection and counterfactual
improvement recommendations for benchmarking and policy evaluation. T [...truncated...]
Author: Ricardo Gonzalez Moyano [cre, aut] ,
Juan Aparicio [aut] ,
Jose Luis Zofio [aut] ,
Victor Espana [aut]
Maintainer: Ricardo Gonzalez Moyano <ricardo.gonzalezm@umh.es>
Diff between PEAXAI versions 1.0.2 dated 2026-06-01 and 1.0.3 dated 2026-08-23
DESCRIPTION | 12 MD5 | 69 NAMESPACE | 116 - R/PEAXAI_counterfactuals.R | 583 +++--- R/PEAXAI_fitting.R | 277 ++ R/PEAXAI_importance_features.R | 221 +- R/PEAXAI_peer.R | 142 - R/PEAXAI_predict.R | 94 R/PEAXAI_ranking.R | 128 - R/SMOTE_Z_data.R | 7 R/SMOTE_data.R | 13 R/convex_facets.R | 46 R/get_SMOTE_DMUs.R | 1033 +++++----- R/label_efficiency.R | 610 +++--- R/preprocessing.R | 3811 +++++++++++++++++++++++++++++----------- R/simulations.R |only R/training.R | 2 README.md | 2 inst/doc/PEAXAI.R | 18 inst/doc/PEAXAI.Rmd | 46 inst/doc/PEAXAI.html | 381 ++- man/PEAXAI_counterfactuals.Rd | 103 - man/PEAXAI_fitting.Rd | 86 man/PEAXAI_global_importance.Rd | 268 +- man/PEAXAI_local_importance.Rd | 294 +-- man/PEAXAI_peer.Rd | 120 - man/PEAXAI_predict.Rd | 104 - man/PEAXAI_ranking.Rd | 111 - man/SMOTE_Z_data.Rd | 6 man/SMOTE_data.Rd | 9 man/cobb_douglas_XnY1.Rd |only man/convex_facets.Rd | 68 man/find_beta_maxmin.Rd | 142 - man/get_SMOTE_DMUs.Rd | 25 man/label_efficiency.Rd | 1 man/reffcy.Rd |only vignettes/PEAXAI.Rmd | 46 37 files changed, 5604 insertions(+), 3390 deletions(-)
Title: Optimal Binning and Weight of Evidence Framework for Modeling
Description: High-performance implementation of 37 optimal binning algorithms
(16 categorical, 21 numerical) for Weight of Evidence ('WoE') transformation,
credit scoring, and risk modeling. Includes advanced methods such as Mixed
Integer Linear Programming ('MILP'), Genetic Algorithms, Simulated Annealing,
and Monotonic Regression. Features automatic method selection based on
Information Value ('IV') maximization, strict monotonicity enforcement, and
efficient handling of large datasets via 'Rcpp'. Provides automated variable
screening by Information Value strength and bin ordering, and generation of
the equivalent 'SQL' 'CASE' expressions for in-database scoring. Fully
integrated with the 'tidymodels' ecosystem for building robust machine
learning pipelines.
Based on methods described in Siddiqi (2006) <doi:10.1002/9781119201731>
and Navas-Palencia (2020) <doi:10.48550/arXiv.2001.08025>.
Author: Jose Evandeilton Lopes [aut, cre, cph]
Maintainer: Jose Evandeilton Lopes <evandeilton@gmail.com>
Diff between OptimalBinningWoE versions 1.0.8 dated 2026-01-29 and 1.13.3 dated 2026-08-23
OptimalBinningWoE-1.0.8/OptimalBinningWoE/inst/include |only OptimalBinningWoE-1.0.8/OptimalBinningWoE/man/fit_logistic_regression.Rd |only OptimalBinningWoE-1.0.8/OptimalBinningWoE/man/ob_gains_table.Rd |only OptimalBinningWoE-1.0.8/OptimalBinningWoE/man/ob_gains_table_feature.Rd |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/DESCRIPTION | 30 OptimalBinningWoE-1.13.3/OptimalBinningWoE/MD5 | 255 OptimalBinningWoE-1.13.3/OptimalBinningWoE/NAMESPACE | 22 OptimalBinningWoE-1.13.3/OptimalBinningWoE/NEWS.md | 1309 ++ OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/RcppExports.R | 382 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/ob_binning_cutpoints_cat.R | 22 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/ob_binning_cutpoints_num.R | 47 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/ob_correlation.R | 8 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/ob_logistic_regression.R | 7 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/ob_utilities.R | 12 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obc_dmiv.R | 8 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obc_jedi_mwoe.R | 8 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obc_sketch.R | 10 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obn_ir.R | 29 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obn_ldb.R | 8 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obn_mdlp.R | 12 OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obn_mob.R | 736 - OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obn_mrblp.R | 601 - OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obn_sketch.R | 798 - OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obwoe.R | 5041 +++++----- OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obwoe_engine.R |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obwoe_report.R |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obwoe_score.R |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obwoe_scorecard.R |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obwoe_select.R |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/R/obwoe_sql.R |only 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OptimalBinningWoE-1.13.3/OptimalBinningWoE/inst/doc/introduction.html | 2641 ++--- OptimalBinningWoE-1.13.3/OptimalBinningWoE/inst/extdata |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/man/control.obwoe.Rd | 29 OptimalBinningWoE-1.13.3/OptimalBinningWoE/man/control.obwoe_scorecard.Rd |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/man/dot-dispatch_algorithm.Rd | 3 OptimalBinningWoE-1.13.3/OptimalBinningWoE/man/dot-ob_as_table.Rd |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/man/dot-ob_auc_ks_binned.Rd |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/man/dot-ob_card_score.Rd |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/man/dot-ob_cutoff_table.Rd |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/man/dot-ob_engine_get.Rd |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/man/dot-ob_engine_registry.Rd |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/man/dot-ob_feature_metrics.Rd |only OptimalBinningWoE-1.13.3/OptimalBinningWoE/man/dot-ob_fit_checked.Rd |only 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More information about OptimalBinningWoE at CRAN
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Title: Marginalization over Incomplete Auxiliaries
Description: Implements methods to estimate conditional outcome means in
settings with missingness-not-at-random and incomplete auxiliary variables.
Specifically, this package implements the marginalization over incomplete
auxiliaries (MIA) method proposed by Mathur et al. (2026) <doi:10.13140/RG.2.2.30750.19524>.
The package supports the iterative conditional expectation estimator and
the noniterative conditional expectation estimator.
Author: Sean McGrath [aut, cre] ,
Shaun Seaman [aut] ,
Willi Zhang [aut] ,
Ilya Shpitser [aut] ,
Maya Mathur [aut]
Maintainer: Sean McGrath <sean.mcgrath514@gmail.com>
Diff between miapack versions 0.1.0 dated 2026-02-25 and 0.2.0 dated 2026-08-23
miapack-0.1.0/miapack/R/mia.R |only miapack-0.1.0/miapack/man/mia.Rd |only miapack-0.2.0/miapack/DESCRIPTION | 12 - miapack-0.2.0/miapack/MD5 | 37 ++-- miapack-0.2.0/miapack/NAMESPACE | 3 miapack-0.2.0/miapack/NEWS.md |only miapack-0.2.0/miapack/R/bootstrap.R | 62 ++++-- miapack-0.2.0/miapack/R/data.R | 2 miapack-0.2.0/miapack/R/mia_ice.R |only miapack-0.2.0/miapack/R/mia_nice.R |only miapack-0.2.0/miapack/R/s3methods.R | 26 +- miapack-0.2.0/miapack/README.md | 151 +++++++++++++---- miapack-0.2.0/miapack/build |only miapack-0.2.0/miapack/man/dat.sim.Rd | 2 miapack-0.2.0/miapack/man/get_CI.Rd | 22 +- miapack-0.2.0/miapack/man/mia_ice.Rd |only miapack-0.2.0/miapack/man/mia_nice.Rd |only miapack-0.2.0/miapack/man/print.mia.Rd | 10 - miapack-0.2.0/miapack/man/print.mia_ci.Rd | 2 miapack-0.2.0/miapack/tests/testthat/test-contrasts.R | 28 +-- miapack-0.2.0/miapack/tests/testthat/test-edge-cases.R | 24 +- miapack-0.2.0/miapack/tests/testthat/test-errors.R | 72 ++++---- miapack-0.2.0/miapack/tests/testthat/test-mia-ice.R |only miapack-0.2.0/miapack/tests/testthat/test-point-est.R | 18 +- 24 files changed, 298 insertions(+), 173 deletions(-)
Title: Companion to the Book Le Logiciel R
Description: Functions and datasets for readers of the book
"Le logiciel R: Maitriser le langage, Effectuer des analyses
statistiques" by Lafaye de Micheaux, Drouilhet and Liquet
(2011) <doi:10.1007/978-2-8178-0115-5>.
The documentation and help pages are written in French.
Author: Pierre Lafaye De Micheaux [aut, cre],
Remy Drouilhet [aut],
Benoit Liquet [aut]
Maintainer: Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
This is a re-admission after prior archival of version 1.2.1 dated 2018-05-17
Diff between LeLogicielR versions 1.2.1 dated 2018-05-17 and 1.2.3 dated 2026-08-23
DESCRIPTION | 39 +++++++++++++++++++++++--------------- MD5 | 46 ++++++++++++++++++++++----------------------- R/camembert.R | 3 +- R/flashy.plot.R | 2 + R/fleches.R | 2 + R/getaddr.R | 2 - R/tuyauxorgue.R | 5 ++-- inst/CITATION | 36 ++++++++++++++++++----------------- man/IMC.ENFANT.Rd | 22 ++++++++++----------- man/INFARCTUS.Rd | 42 ++++++++++++++++++++--------------------- man/INTIMA.MEDIA.Rd | 34 ++++++++++++++++----------------- man/LeLogicielR-package.Rd | 7 ++---- man/NUTRIAGE.Rd | 42 ++++++++++++++++++++--------------------- man/POIDS.NAISSANCE.Rd | 38 ++++++++++++++++++------------------- man/VectorAddr.Rd | 2 - man/camembert.Rd | 10 ++++----- man/cor0.test.Rd | 14 ++++++------- man/cor2.test.2.sample.Rd | 16 +++++++-------- man/diagcroix.Rd | 8 +++---- man/flashy.plot.Rd | 12 +++++------ man/fleches.Rd | 10 ++++++--- man/tuyauxorgue.Rd | 10 ++++----- man/writeaddr.Rd | 6 ++--- src/getaddr.c | 8 ++++--- 24 files changed, 219 insertions(+), 197 deletions(-)
Title: Statistical Tools for Evaluation of in Vitro Diagnostic Reagents
Description: Provides statistical workflows used in the evaluation of in vitro
diagnostic reagents. Facilities include method comparison and
Bland-Altman analysis, receiver operating characteristic analysis,
qualitative agreement, precision and variance-component analysis,
reference intervals, stability studies, quality-control charts,
curve fitting, analytical sensitivity, outlier and normality assessment,
and sample-size calculations. For methodological details,
see Bland and Altman (1986) <doi:10.1016/S0140-6736(86)90837-8>,
Passing and Bablok (1983) <doi:10.1515/cclm.1983.21.11.709>,
Linnet (1993) <doi:10.1093/clinchem/39.3.424>,
Hanley and McNeil (1982) <doi:10.1148/radiology.143.1.7063747>,
Horn et al. (1998) <doi:10.1093/clinchem/44.3.622>,
Westgard et al. (1981) <doi:10.1093/clinchem/27.3.493>,
and Lu et al. (2016) <doi:10.1515/ijb-2015-0039>.
Author: hiox-tech [cph, aut, cre]
Maintainer: hiox-tech <GeorgeBinDragon@outlook.com>
Diff between ivdtools versions 0.1.2 dated 2026-08-20 and 0.1.3 dated 2026-08-23
DESCRIPTION | 6 +-- MD5 | 12 +++---- NEWS.md | 6 +++ R/005-fit.R | 13 ++++--- R/015-sensitivity.R | 65 +++++++++++++++++++++++++++++++------- man/lob_lod_loq.Rd | 18 +++++++--- tests/testthat/test-sensitivity.R | 50 ++++++++++++++++++++++++++++- 7 files changed, 138 insertions(+), 32 deletions(-)
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2022, JMLR) <https://www.jmlr.org/papers/v23/20-322.html> and Sigrist (2023, TPAMI) <doi:10.1109/TPAMI.2022.3168152> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Tim Gyger [aut],
Pascal Kuendig [aut],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the incl [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 1.7.2 dated 2026-08-19 and 1.7.4 dated 2026-08-23
DESCRIPTION | 8 MD5 | 23 R/GPModel.R | 11 configure.ac | 2 man/GPModel.Rd | 6 man/GPModel_shared_params.Rd | 6 man/fitGPModel.Rd | 6 src/include/GPBoost/likelihoods.h | 628 +++++++++++++++++++- src/include/GPBoost/sparse_matrix_utils.h | 2 src/include/LightGBM/utils/openmp_wrapper.h | 2 tests/testthat/Rplots.pdf |only tests/testthat/_snaps |only tests/testthat/test_GPModel_ar1_multifidelity.R | 738 ++++++++++++------------ tests/testthat/test_GPModel_non_Gaussian_data.R | 207 ++++++ 14 files changed, 1208 insertions(+), 431 deletions(-)
Title: Transparent Analysis of Ordered Categorical Sequences
Description: Provides transparent, reproducible, and auditable tools for validating,
preparing, encoding, summarising, comparing, modelling, and diagnosing
ordered categorical sequence data. Supports explicit preprocessing
policies, contiguous motifs and bounded subsequences, consensus and group
comparisons, edit and transition distances, clustering and stability
diagnostics, transition networks, higher-order models, categorical,
mixture, multichannel, and covariate hidden Markov models, longitudinal
panel workflows, time-varying models, design-aware inference, analysis
contracts and provenance audits, and guarded adapters to specialist
sequence-analysis packages.
Author: Stefanos Balaskas [aut, cre]
Maintainer: Stefanos Balaskas <s.balaskas@ac.upatras.gr>
Diff between gp3sequences versions 0.1.0 dated 2026-07-30 and 0.3.0 dated 2026-08-23
DESCRIPTION | 27 MD5 | 176 ++++ NAMESPACE | 66 + NEWS.md | 66 + R/gp3sequences-package.R | 12 R/sequence-adapters.R |only R/sequence-advanced-internals.R |only R/sequence-analysis-audit.R |only R/sequence-capabilities.R |only R/sequence-consensus-groups.R |only R/sequence-contracts.R |only R/sequence-covariate-hmm.R |only R/sequence-distances-clustering.R |only R/sequence-extension-internals.R |only R/sequence-inference.R |only R/sequence-latent-models.R |only R/sequence-multichannel-hmm.R |only R/sequence-networks.R |only R/sequence-panel.R |only R/sequence-subsequences.R |only R/sequence-test-cases.R |only R/sequence-time-models.R |only R/sequence-visualisations-extended.R |only README.md | 583 ++++++++------ build/vignette.rds |binary inst/CITATION | 2 inst/doc/choosing-a-sequence-analysis-method.R |only inst/doc/choosing-a-sequence-analysis-method.Rmd |only inst/doc/choosing-a-sequence-analysis-method.html |only inst/doc/consensus-and-group-comparisons.R |only inst/doc/consensus-and-group-comparisons.Rmd |only inst/doc/consensus-and-group-comparisons.html |only inst/doc/distances-clustering-and-stability.R |only inst/doc/distances-clustering-and-stability.Rmd |only inst/doc/distances-clustering-and-stability.html |only inst/doc/extended-sequence-visualisations.R |only inst/doc/extended-sequence-visualisations.Rmd |only inst/doc/extended-sequence-visualisations.html |only inst/doc/getting-started-with-gp3sequences.R |only inst/doc/getting-started-with-gp3sequences.Rmd |only inst/doc/getting-started-with-gp3sequences.html |only inst/doc/latent-models-and-optional-adapters.R |only inst/doc/latent-models-and-optional-adapters.Rmd |only inst/doc/latent-models-and-optional-adapters.html |only inst/doc/longitudinal-panel-sequences.R |only inst/doc/longitudinal-panel-sequences.Rmd |only inst/doc/longitudinal-panel-sequences.html |only inst/doc/multichannel-and-covariate-hmms.R |only inst/doc/multichannel-and-covariate-hmms.Rmd |only inst/doc/multichannel-and-covariate-hmms.html |only inst/doc/noncontiguous-subsequence-mining.R |only inst/doc/noncontiguous-subsequence-mining.Rmd |only inst/doc/noncontiguous-subsequence-mining.html |only inst/doc/reproducible-sequence-analysis-case-study.R |only inst/doc/reproducible-sequence-analysis-case-study.Rmd |only inst/doc/reproducible-sequence-analysis-case-study.html |only inst/doc/sequence-data-validation-and-preparation.R |only inst/doc/sequence-data-validation-and-preparation.Rmd |only inst/doc/sequence-data-validation-and-preparation.html |only inst/doc/sequence-inference-and-randomization.R |only inst/doc/sequence-inference-and-randomization.Rmd |only inst/doc/sequence-inference-and-randomization.html |only inst/doc/time-varying-condition-models.R |only inst/doc/time-varying-condition-models.Rmd |only inst/doc/time-varying-condition-models.html |only inst/doc/transition-networks-and-higher-order-models.R |only inst/doc/transition-networks-and-higher-order-models.Rmd |only inst/doc/transition-networks-and-higher-order-models.html |only inst/validation |only man/as_arules_sequences.Rd |only man/as_grpstring_data.Rd |only man/as_igraph_transition_network.Rd |only man/as_seqhmm_sequences.Rd |only man/as_traminer_sequences.Rd |only man/audit_sequence_analysis.Rd |only man/bootstrap_sequence_clusters.Rd |only man/bootstrap_sequence_group_difference.Rd |only man/bootstrap_transition_network.Rd |only man/cluster_sequences.Rd |only man/compare_sequence_analysis_results.Rd |only man/compare_sequence_groups.Rd |only man/compare_sequence_hmms.Rd |only man/compare_sequence_panel_changes.Rd |only man/compare_sequence_subsequences.Rd |only man/compute_sequence_distance.Rd |only man/create_consensus_sequence.Rd |only man/create_sequence_cluster_ensemble.Rd |only man/create_transition_network.Rd |only man/declare_sequence_comparison_design.Rd |only man/decode_covariate_sequence_states.Rd |only man/decode_multichannel_sequence_states.Rd |only man/decode_sequence_states.Rd |only man/detect_transition_communities.Rd |only man/extract_representative_sequences.Rd |only man/extract_sequence_subsequences.Rd |only man/filter_sequence_subsequences.Rd |only man/fit_covariate_sequence_hmm.Rd |only man/fit_higher_order_transition_model.Rd |only man/fit_multichannel_sequence_hmm.Rd |only man/fit_sequence_hmm.Rd |only man/fit_sequence_hmm_mixture.Rd |only man/fit_time_varying_sequence_model.Rd |only man/format_consensus_sequence.Rd |only man/gp3sequences-package.Rd | 12 man/plot_consensus_sequence.Rd |only man/plot_multichannel_sequence_hmm.Rd |only man/plot_sequence_cluster_silhouette.Rd |only man/plot_sequence_distance_heatmap.Rd |only man/plot_sequence_entropy.Rd |only man/plot_sequence_group_comparison.Rd |only man/plot_sequence_group_inference.Rd |only man/plot_sequence_index.Rd |only man/plot_sequence_panel_changes.Rd |only man/plot_sequence_state_distribution.Rd |only man/plot_sequence_subsequences.Rd |only man/plot_time_varying_sequence_model.Rd |only man/plot_transition_network.Rd |only man/predict_covariate_transition_probabilities.Rd |only man/predict_next_state.Rd |only man/predict_time_varying_sequence_model.Rd |only man/prepare_gp3tools_sequences.Rd |only man/prepare_sequence_panel.Rd |only man/sequence_capabilities.Rd |only man/summarise_consensus_agreement.Rd |only man/summarise_covariate_sequence_hmm.Rd |only man/summarise_multichannel_sequence_hmm.Rd |only man/summarise_sequence_cluster_stability.Rd |only man/summarise_sequence_distance.Rd |only man/summarise_sequence_group_inference.Rd |only man/summarise_sequence_hmm.Rd |only man/summarise_sequence_panel.Rd |only man/summarise_sequence_subsequences.Rd |only man/summarise_time_varying_sequence_model.Rd |only man/summarise_transition_centrality.Rd |only man/test_sequence_group_difference.Rd |only man/validate_sequence_clusters.Rd |only tests/testthat/helper-advanced-sequences.R |only tests/testthat/helper-sequence-extensions.R |only tests/testthat/test-adversarial-inputs.R |only tests/testthat/test-analysis-audit.R |only tests/testthat/test-capabilities.R |only tests/testthat/test-contract-invariants.R |only tests/testthat/test-metamorphic-invariants.R |only tests/testthat/test-sequence-adapters.R |only tests/testthat/test-sequence-consensus-groups.R |only tests/testthat/test-sequence-covariate-hmm.R |only tests/testthat/test-sequence-distances-clustering.R |only tests/testthat/test-sequence-inference.R |only tests/testthat/test-sequence-latent-models.R |only tests/testthat/test-sequence-multichannel-hmm.R |only tests/testthat/test-sequence-networks.R |only tests/testthat/test-sequence-panel.R |only tests/testthat/test-sequence-subsequences.R |only tests/testthat/test-sequence-time-models.R |only tests/testthat/test-sequence-visualisations-extended.R |only vignettes/choosing-a-sequence-analysis-method.Rmd |only vignettes/consensus-and-group-comparisons.Rmd |only vignettes/distances-clustering-and-stability.Rmd |only vignettes/extended-sequence-visualisations.Rmd |only vignettes/getting-started-with-gp3sequences.Rmd |only vignettes/latent-models-and-optional-adapters.Rmd |only vignettes/longitudinal-panel-sequences.Rmd |only vignettes/multichannel-and-covariate-hmms.Rmd |only vignettes/noncontiguous-subsequence-mining.Rmd |only vignettes/reproducible-sequence-analysis-case-study.Rmd |only vignettes/sequence-data-validation-and-preparation.Rmd |only vignettes/sequence-inference-and-randomization.Rmd |only vignettes/time-varying-condition-models.Rmd |only vignettes/transition-networks-and-higher-order-models.Rmd |only 169 files changed, 674 insertions(+), 270 deletions(-)
Title: Governance-First Predictive Modelling for 'Gazepoint' Research
Description: Provides governance-first infrastructure for leakage-resistant
predictive modelling and validation using 'Gazepoint'-derived research
data. Supports explicit task and role declarations, feature-provenance
manifests, group-aware holdout splitting and repeated resampling,
repository-aware fold evaluation, explicit governed tuning, nested grouped
resampling, fold-local preprocessing, discrimination and calibration
metrics, target-aligned uncertainty, external-validation and
transportability reports, prediction-to-decision governance, target-aware
conformal prediction, dataset-shift auditing, locked analysis plans,
portable model artifacts, robustness diagnostics, environment provenance,
research-object export, model cards, and reproducibility evidence.
Intended only for explicitly observed, non-sensitive outcomes and declared
scientific purposes. Use is prohibited for person identification,
biometric authentication, health or protected-attribute inference, and
direct or indirect inference [...truncated...]
Author: Stefanos Balaskas [aut, cre]
Maintainer: Stefanos Balaskas <s.balaskas@ac.upatras.gr>
Diff between gp3ml versions 0.1.0 dated 2026-07-30 and 0.3.0 dated 2026-08-23
DESCRIPTION | 46 +-- MD5 | 269 ++++++++++++++++++-- NAMESPACE | 134 +++++++++ NEWS.md | 50 +++ R/analysis-plan.R |only R/api-contracts.R |only R/conformal-prediction.R |only R/dataset-shift.R |only R/decision-governance.R |only R/engine-capabilities.R |only R/environment-provenance.R |only R/external-validation-expansion.R |only R/governance-profile.R |only R/governance-reports.R | 8 R/gp3ml-package.R | 40 ++ R/group-aware-resampling.R | 2 R/group-aware-splitting.R | 2 R/interoperability.R |only R/model-artifacts.R |only R/model-engines.R | 5 R/model-tuning.R |only R/modeling-utils.R | 4 R/nested-resampling.R |only R/next-generation-helpers.R |only R/release-provenance.R |only R/reproducibility-hardening.R |only R/resample-evaluation.R |only R/resampling-diagnostics.R | 2 R/research-workflow.R |only R/ro-crate.R |only R/roadmap-reporting.R |only R/roadmap-utils.R |only R/robustness-stability.R |only R/synthetic-workflows.R |only R/target-uncertainty.R |only R/task-governance.R | 4 README.md | 128 ++++++++- build |only inst/doc |only man/apply_gazepoint_decision_rule.Rd |only man/as_gp3ml_data.Rd |only man/assert_gp3ml_engine_available.Rd |only man/assess_gazepoint_conformal_coverage.Rd |only man/audit_gazepoint_abstention.Rd |only man/audit_gazepoint_dataset_shift.Rd |only man/audit_gazepoint_missingness_shift.Rd |only man/audit_gazepoint_model_robustness.Rd |only man/audit_gazepoint_nested_resampling.Rd |only man/audit_gazepoint_plan_deviations.Rd |only man/audit_gazepoint_reproducibility.Rd |only man/audit_gp3ml_api_stability.Rd |only man/audit_gp3ml_governance_profile.Rd |only man/bootstrap_gazepoint_metrics_by_unit.Rd |only man/capture_gazepoint_environment.Rd |only man/collect_gazepoint_fold_predictions.Rd |only man/combine_gazepoint_handoffs.Rd |only man/compare_gazepoint_environments.Rd |only man/compare_gazepoint_models.Rd |only man/create_gazepoint_decision_rule.Rd |only man/create_gazepoint_handoff.Rd |only man/create_gazepoint_model_artifact.Rd |only man/create_gazepoint_nested_folds.Rd |only man/create_gazepoint_release_evidence.Rd |only man/create_gazepoint_release_model_card.Rd |only man/create_gazepoint_synthetic_manifest.Rd |only man/create_gazepoint_synthetic_task.Rd |only man/create_gazepoint_tuning_grid.Rd |only man/create_gp3ml_governance_profile.Rd |only man/declare_gazepoint_analysis_plan.Rd |only man/declare_gazepoint_external_dataset.Rd |only man/evaluate_gazepoint_external_transportability.Rd |only man/evaluate_gazepoint_feature_stability.Rd |only man/evaluate_gazepoint_group_folds.Rd |only man/evaluate_gazepoint_missingness_sensitivity.Rd |only man/evaluate_gazepoint_nested_resampling.Rd |only man/evaluate_gazepoint_seed_stability.Rd |only man/evaluate_gazepoint_threshold_stability.Rd |only man/evaluate_gazepoint_thresholds.Rd |only man/fit_gazepoint_conformal.Rd |only man/gp3ml-package.Rd | 47 ++- man/gp3ml_api_contracts.Rd |only man/gp3ml_engine_capabilities.Rd |only man/gp3ml_interop_contracts.Rd |only man/gp3ml_object_schema.Rd |only man/integrate_black_box_model.Rd | 5 man/lock_gazepoint_analysis_plan.Rd |only man/normalize_gazepoint_artifact_text.Rd |only man/plot.gp3ml_abstention_audit.Rd |only man/plot.gp3ml_api_stability_audit.Rd |only man/plot.gp3ml_conformal_coverage.Rd |only man/plot.gp3ml_dataset_shift_audit.Rd |only man/plot.gp3ml_engine_capabilities.Rd |only man/plot.gp3ml_environment_comparison.Rd |only man/plot.gp3ml_governance_profile_audit.Rd |only man/plot.gp3ml_handoff_validation.Rd |only man/plot.gp3ml_model_artifact_validation.Rd |only man/plot.gp3ml_model_robustness_audit.Rd |only man/plot.gp3ml_plan_deviation_audit.Rd |only man/plot.gp3ml_release_checksum_validation.Rd |only man/plot.gp3ml_reproducibility_audit.Rd |only man/plot.gp3ml_research_bundle_validation.Rd |only man/plot.gp3ml_ro_crate_validation.Rd |only man/plot.gp3ml_threshold_evaluation.Rd |only man/predict_gazepoint_interval.Rd |only man/predict_gazepoint_set.Rd |only man/restore_gazepoint_model_artifact.Rd |only man/select_gazepoint_model.Rd |only man/select_gazepoint_threshold.Rd |only man/simulate_gazepoint_governed_data.Rd |only man/simulate_gazepoint_research_handoffs.Rd |only man/summarize_gazepoint_resample_performance.Rd |only man/summarize_gazepoint_resample_uncertainty.Rd |only man/summarize_gazepoint_shift.Rd |only man/test_gazepoint_model_portability.Rd |only man/tune_gazepoint_model.Rd |only man/validate_gazepoint_analysis_plan.Rd |only man/validate_gazepoint_conformal.Rd |only man/validate_gazepoint_decision_rule.Rd |only man/validate_gazepoint_environment.Rd |only man/validate_gazepoint_handoff.Rd |only man/validate_gazepoint_model_artifact.Rd |only man/validate_gazepoint_model_tuning.Rd |only man/validate_gazepoint_nested_evaluation.Rd |only man/validate_gazepoint_nested_folds.Rd |only man/validate_gazepoint_release_checksums.Rd |only man/validate_gazepoint_resample_evaluation.Rd |only man/validate_gazepoint_research_bundle.Rd |only man/validate_gazepoint_ro_crate.Rd |only man/validate_gazepoint_target_uncertainty.Rd |only man/validate_gazepoint_transportability.Rd |only man/validate_gp3ml_object_contract.Rd |only man/with_gazepoint_reproducible_output.Rd |only man/write_gazepoint_analysis_plan.Rd |only man/write_gazepoint_fold_diagnostics_csv.Rd | 2 man/write_gazepoint_group_folds_csv.Rd | 2 man/write_gazepoint_ml_split_csv.Rd | 2 man/write_gazepoint_model_tuning.Rd |only man/write_gazepoint_nested_evaluation.Rd |only man/write_gazepoint_release_checksums.Rd |only man/write_gazepoint_release_model_card.Rd |only man/write_gazepoint_reproducibility_audit.Rd |only man/write_gazepoint_resample_evaluation.Rd |only man/write_gazepoint_ro_crate.Rd |only man/write_gazepoint_target_uncertainty.Rd |only man/write_gazepoint_transportability_report.Rd |only man/write_gp3ml_api_contracts.Rd |only man/write_gp3ml_governance_profile.Rd |only tests/testthat/helper-roadmap.R |only tests/testthat/test-analysis-plan.R |only tests/testthat/test-api-contracts.R |only tests/testthat/test-bootstrap-metadata.R | 2 tests/testthat/test-conformal-prediction.R |only tests/testthat/test-dataset-shift.R |only tests/testthat/test-decision-governance.R |only tests/testthat/test-engine-capabilities.R |only tests/testthat/test-environment-provenance.R |only tests/testthat/test-external-validation-expansion.R |only tests/testthat/test-governance-profile.R |only tests/testthat/test-interoperability.R |only tests/testthat/test-model-tuning.R |only tests/testthat/test-nested-resampling.R |only tests/testthat/test-release-provenance.R |only tests/testthat/test-reproducibility-hardening.R |only tests/testthat/test-resample-evaluation.R |only tests/testthat/test-research-workflow.R |only tests/testthat/test-ro-crate.R |only tests/testthat/test-roadmap-regressions.R |only tests/testthat/test-roadmap-reporting.R |only tests/testthat/test-roadmap-smoke.R |only tests/testthat/test-roadmap-writers.R |only tests/testthat/test-robustness-stability.R |only tests/testthat/test-synthetic-workflows.R |only tests/testthat/test-target-uncertainty.R |only vignettes |only 174 files changed, 662 insertions(+), 92 deletions(-)
Title: Contract-First Bayesian Workflows for Hierarchical Behavioural
Data
Description: Provides transparent, contract-first infrastructure for Bayesian
analysis of repeated-measures and hierarchical behavioural data. It
supports approved Bernoulli-logit, positive lognormal duration, and
governed Gaussian dynamic-pupillometry workflows with strict readiness
auditing, deterministic simulation, explicit preparation and
transformation replay, inspectable scale-aware priors, prior and posterior
predictive checks, restricted optional fitting through 'brms' with either
'rstan' or 'cmdstanr', sampling and temporal diagnostics, explicit
posterior estimands, sensitivity analysis, target-specific predictive
validation, simulation-based calibration, and conservative reporting.
Core contracts and validation remain backend-independent.
Version 0.5 adds governed robust and distributional dynamic pupillometry, bounded ARMA residual structures, Gaussian-process trajectories, explicit measurement uncertainty and missing-data models, joint binocular analysis, predictive model comparison, f [...truncated...]
Author: Stefanos Balaskas [aut, cre, cph]
Maintainer: Stefanos Balaskas <s.balaskas@ac.upatras.gr>
Diff between gp3bayes versions 0.1.1 dated 2026-08-09 and 0.5.0 dated 2026-08-23
DESCRIPTION | 29 MD5 | 811 +++++++++- NAMESPACE | 634 +++++++ NEWS.md | 179 ++ R/advanced-optional-workflows.R |only R/advanced-predictive-graphics.R |only R/analysis-bundle.R |only R/analysis-manifest.R |only R/backend-reliability.R |only R/binary-model-fitting.R | 24 R/design-support-diagnostics.R |only R/evidence-graphics-gg.R |only R/global-variables.R |only R/gp3bayes-package.R | 34 R/hierarchical-effects-advanced.R |only R/loo-group-influence.R |only R/loo-influence-atlas.R |only R/model-card.R |only R/model-readiness-audit.R | 4 R/posterior-validation-core.R | 12 R/postfit-exploration.R |only R/prediction-support.R |only R/prediction-surfaces.R |only R/predictive-diagnostics-advanced.R |only R/predictive-distribution-atlas.R |only R/prior-posterior-bridge.R |only R/publication-graphics.R |only R/publication-registry-dashboard.R |only R/pupil-advanced-audit.R |only R/pupil-advanced-diagnostics.R |only R/pupil-advanced-estimands.R |only R/pupil-advanced-fit.R |only 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inst/doc/optional-backend-installation.Rmd | 91 - inst/doc/optional-backend-installation.html | 164 +- inst/doc/pathological-simulation-scenarios.R |only inst/doc/pathological-simulation-scenarios.Rmd |only inst/doc/pathological-simulation-scenarios.html |only inst/doc/posterior-exploration-and-graphics.R |only inst/doc/posterior-exploration-and-graphics.Rmd |only inst/doc/posterior-exploration-and-graphics.html |only inst/doc/pre-fit-design-diagnostics.R |only inst/doc/pre-fit-design-diagnostics.Rmd |only inst/doc/pre-fit-design-diagnostics.html |only inst/doc/prediction-calibration-and-scoring.R |only inst/doc/prediction-calibration-and-scoring.Rmd |only inst/doc/prediction-calibration-and-scoring.html |only inst/doc/prediction-contrasts-ranking-and-groups.R |only inst/doc/prediction-contrasts-ranking-and-groups.Rmd |only inst/doc/prediction-contrasts-ranking-and-groups.html |only inst/doc/prediction-profiles-surfaces-and-contrasts.R |only 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man/pupil_readiness_table.Rd |only man/pupil_residual_acf.Rd |only man/pupil_residual_scale_table.Rd |only man/pupil_residual_spectrum.Rd |only man/pupil_response_parameter_table.Rd |only man/pupil_sensitivity_table.Rd |only man/pupil_specification_table.Rd |only man/pupil_trajectory_derivative_table.Rd |only man/pupil_trajectory_table.Rd |only man/pupil_validation_table.Rd |only man/random_intercept_variance_partition.Rd |only man/random_intercept_variance_partition_table.Rd |only man/random_slope_sensitivity_table.Rd |only man/read_analysis_manifest.Rd |only man/read_gp3bayes_schema.Rd |only man/recovery_estimate_table.Rd |only man/recovery_fit_status_table.Rd |only man/recovery_parameter_table.Rd |only man/register_publication_figure.Rd |only man/register_publication_table.Rd |only man/review_duration_extremes.Rd |only man/run_group_deletion_sensitivity.Rd |only man/run_random_slope_sensitivity.Rd |only man/run_sbc_plan.Rd |only man/run_sensitivity_suite.Rd |only man/sampler_diagnostic_table.Rd |only man/save_figure_set.Rd |only man/save_publication_registry_figures.Rd |only man/sbc_overview_table.Rd |only man/sbc_stats_table.Rd |only man/schema_comparison_table.Rd |only man/score_pupil_predictions.Rd |only man/sensitivity_suite_table.Rd |only man/simulate_advanced_pupil_timecourse.Rd |only man/simulate_binary_pathology.Rd |only man/simulate_binocular_pupil_timecourse.Rd |only man/simulate_declared_prior_draws.Rd |only man/simulate_duration_pathology.Rd |only man/simulate_pupil_response_shape.Rd |only man/simulate_pupil_timecourse.Rd |only man/specify_advanced_pupil_timecourse_model.Rd |only man/specify_binary_model_with_interaction_prior.Rd |only man/specify_binocular_pupil_model.Rd |only man/specify_duration_model_with_interaction_prior.Rd |only man/specify_pupil_distribution.Rd |only man/specify_pupil_response_shape_model.Rd |only man/specify_pupil_timecourse_model.Rd |only man/summarise_binary_group_variation.Rd |only 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man/write_analysis_bundle_report.Rd |only man/write_diagnostic_dashboard_report.Rd |only man/write_model_card.Rd |only man/write_publication_registry.Rd |only man/write_reproducibility_report.Rd |only tests/testthat/test-advanced-optional-workflows.R |only tests/testthat/test-advanced-predictive-diagnostics.R |only tests/testthat/test-advanced-predictive-graphics.R |only tests/testthat/test-analysis-bundle-suite.R |only tests/testthat/test-analysis-manifest.R |only tests/testthat/test-backend-reliability.R |only tests/testthat/test-design-support-diagnostics.R |only tests/testthat/test-evidence-graphics-gg.R |only tests/testthat/test-hierarchical-effects-advanced.R |only tests/testthat/test-loo-group-influence.R |only tests/testthat/test-loo-influence-atlas.R |only tests/testthat/test-model-card.R |only tests/testthat/test-postfit-adapter-smoke-contracts.R |only tests/testthat/test-postfit-exploration-suite.R |only tests/testthat/test-postfit-failure-contracts.R |only tests/testthat/test-prediction-support-suite.R |only tests/testthat/test-prediction-surfaces.R |only tests/testthat/test-predictive-distribution-atlas.R |only tests/testthat/test-prior-posterior-bridge.R |only tests/testthat/test-public-api-0.5-contract.R |only tests/testthat/test-public-api-contract.R |only tests/testthat/test-public-api-documentation-contract.R |only tests/testthat/test-publication-graphics-suite.R |only tests/testthat/test-publication-registry-dashboard.R |only tests/testthat/test-pupil-05-regressions.R |only tests/testthat/test-pupil-advanced-audit.R |only tests/testthat/test-pupil-advanced-brms-translation.R |only tests/testthat/test-pupil-advanced-graphics.R |only tests/testthat/test-pupil-advanced-sensitivity.R |only tests/testthat/test-pupil-advanced-specification.R |only tests/testthat/test-pupil-binocular.R |only tests/testthat/test-pupil-contract-gazepoint.R |only tests/testthat/test-pupil-functional-estimands.R |only tests/testthat/test-pupil-graphics-failures.R |only tests/testthat/test-pupil-measurement-missingness.R |only tests/testthat/test-pupil-response-shape.R |only tests/testthat/test-pupil-simulation-preparation.R |only tests/testthat/test-pupil-specification-estimands.R |only tests/testthat/test-pupil-temporal-complexity.R |only tests/testthat/test-pupil-validation-sensitivity.R |only tests/testthat/test-recovery-sensitivity-publication.R |only tests/testthat/test-sbc-publication-adapters.R |only tests/testthat/test-sensitivity-evidence-suite.R |only tests/testthat/test-specification-closure.R |only tests/testthat/test-unified-workflow-api.R |only vignettes/advanced-dynamic-pupillometry-0-5.Rmd |only vignettes/advanced-optional-workflows.Rmd |only vignettes/advanced-predictive-diagnostics.Rmd |only vignettes/arma-and-temporal-diagnostics.Rmd |only vignettes/backend-portability.Rmd |only vignettes/backend-reliability.Rmd |only vignettes/bayesian-dynamic-pupillometry.Rmd |only vignettes/binary-end-to-end.Rmd | 5 vignettes/binocular-pupil-models.Rmd |only vignettes/computational-governance-and-model-cards.Rmd |only vignettes/declared-prior-versus-posterior.Rmd |only vignettes/duration-end-to-end.Rmd | 5 vignettes/end-to-end-evidence-showcase.Rmd |only vignettes/estimands-and-sensitivity.Rmd |only vignettes/evidence-graphics-and-governance.Rmd |only vignettes/experimental-pupil-response-shape.Rmd |only vignettes/fitting-pupil-timecourse-models.Rmd |only vignettes/functional-dynamics-and-predictive-calibration.Rmd |only vignettes/gaussian-process-pupil-trajectories.Rmd |only vignettes/gazepoint-pupil-interoperability.Rmd |only vignettes/governed-pupil-model-comparison.Rmd |only vignettes/grouped-loo-influence.Rmd |only vignettes/hierarchical-effect-atlas.Rmd |only vignettes/hierarchical-effects-and-uncertainty.Rmd |only vignettes/loo-influence-and-model-comparison.Rmd |only vignettes/loo-influence-atlas.Rmd |only vignettes/measurement-error-and-missing-pupil-data.Rmd |only vignettes/model-cards-and-reporting-inventories.Rmd |only vignettes/optional-backend-installation.Rmd | 91 - vignettes/pathological-simulation-scenarios.Rmd |only vignettes/posterior-exploration-and-graphics.Rmd |only vignettes/pre-fit-design-diagnostics.Rmd |only vignettes/prediction-calibration-and-scoring.Rmd |only vignettes/prediction-contrasts-ranking-and-groups.Rmd |only vignettes/prediction-profiles-surfaces-and-contrasts.Rmd |only vignettes/predictive-distribution-and-calibration-uncertainty.Rmd |only vignettes/public-api-map.Rmd |only vignettes/publication-analysis-bundles.Rmd |only vignettes/publication-registries-and-dashboards.Rmd |only vignettes/pupil-baseline-gaze-luminance-sensitivity.Rmd |only vignettes/pupil-ppc-and-temporal-diagnostics.Rmd |only vignettes/pupil-preparation-and-auditing.Rmd |only vignettes/pupil-temporal-validation.Rmd |only vignettes/pupil-trajectories-and-estimands.Rmd |only vignettes/quality-hardening-and-failure-contracts.Rmd |only vignettes/recovery-diagnostics-for-publication.Rmd |only vignettes/release-case-study.Rmd |only vignettes/reproducible-analysis-manifests.Rmd |only vignettes/robust-distributional-pupil-models.Rmd |only vignettes/sbc-publication-diagnostics.Rmd |only vignettes/sensitivity-atlas.Rmd |only vignettes/sensitivity-evidence-workflow.Rmd |only vignettes/specification-closure.Rmd |only vignettes/stable-unified-workflow.Rmd |only vignettes/synthetic-advanced-pupillometry-gallery.Rmd |only vignettes/synthetic-gazepoint-pupillometry-case-study.Rmd |only vignettes/transformation-replay-and-detailed-ppc.Rmd |only 765 files changed, 2177 insertions(+), 333 deletions(-)
Title: Functional Propensity Score for Causal Inference
Description: Implements functional propensity score (FPS) weighting for causal inference with functional treatments. The method estimates weights that balance observed confounders by removing their dependence on the functional treatment and uses a dual formulation of the weighting problem for efficient unconstrained optimization. The framework supports scalar, binary, and functional outcomes, as well as functional covariates, and can be used to estimate marginal causal effects in settings with time-varying exposures. The methodology follows Ciardulli, S., Fontana, N., Vantini, S., and Ieva, F. (2026) "Generalized propensity score weighting for functional causal inference framework" <doi:10.48550/arXiv.2608.03200>.
Author: Nicole Fontana [aut, cre],
Simone Ciardulli [aut],
Simone Vantini [ths],
Francesca Ieva [ths]
Maintainer: Nicole Fontana <nicole.fontana@polimi.it>
Diff between FPScausal versions 0.1.0 dated 2026-08-09 and 0.1.1 dated 2026-08-23
DESCRIPTION | 16 ++++++++++------ MD5 | 8 ++++---- inst/WORDLIST | 2 ++ inst/doc/FPScausal.html | 44 ++++++++++++++++++++++---------------------- man/FPScausal-package.Rd | 6 ++++++ 5 files changed, 44 insertions(+), 32 deletions(-)
Title: Easily Scrape and Process AFL Data
Description: An easy package for scraping and processing Australia Rules Football (AFL)
data. 'fitzRoy' provides a range of functions for accessing publicly available data
from 'AFL Tables' <https://afltables.com/afl/afl_index.html>, 'Footy Wire' <https://www.footywire.com> and
'The Squiggle' <https://squiggle.com.au>. Further functions allow for easy processing,
cleaning and transformation of this data into formats that can be used for analysis.
Author: James Day [cre, aut],
Robert Nguyen [aut],
Matthew Erbs [ctb],
Oscar Lane [aut],
Jason Zivkovic [ctb],
Jacob Holden [ctb]
Maintainer: James Day <jamesthomasday@gmail.com>
Diff between fitzRoy versions 1.7.0 dated 2026-03-12 and 1.8.0 dated 2026-08-23
DESCRIPTION | 9 MD5 | 79 ++++--- R/fetch-betting-odds.R | 2 R/fetch-fixture.R | 3 R/fetch-ladder.R | 2 R/fetch-outofcontract.R | 2 R/fetch-player-stats.R | 30 +- R/fetch-results.R | 2 R/fetch_awards.R | 8 R/fetch_supercoach_dreamteam.R | 2 R/fetch_team_stats.R | 6 R/helper-aflcoaches.R | 2 R/helpers-afl.R | 202 +++++++++++++++++--- R/helpers-afltables-playerdetails.R | 2 R/helpers-afltables-playerstats.R | 100 ++++++--- R/helpers-footywire-playerdetails.R | 6 R/helpers-footywire.R | 8 R/plot-score-worm.R | 2 R/utils-http.R |only R/womens_stats.R | 13 - R/z_score-progression.R | 4 inst/doc/elo-ratings-example.html | 4 man/get_aflw_cookie.Rd | 2 man/get_score_progression_raw.Rd | 4 tests/testthat/_snaps |only tests/testthat/helper-afltables.R |only tests/testthat/helper-footywire.R |only tests/testthat/helper-network.R |only tests/testthat/test-fetch-awards.R | 98 +++++---- tests/testthat/test-fetch-betting-odds.R | 102 +++++----- tests/testthat/test-fetch-fixture.R | 176 +++++++++-------- tests/testthat/test-fetch-ladder.R | 163 +++++++++------- tests/testthat/test-fetch-lineup.R | 118 ++++++----- tests/testthat/test-fetch-outofcontract.R | 90 ++++---- tests/testthat/test-fetch-player-details.R | 70 +++--- tests/testthat/test-fetch-player-stats.R | 152 +++++++++------ tests/testthat/test-fetch-results.R | 66 +++--- tests/testthat/test-fetch_supercoach_dreamteam.R | 60 +++-- tests/testthat/test-fetch_team_stats.R | 18 - tests/testthat/test-helpers-afltables-playerstats.R | 70 ++++-- tests/testthat/test-helpers-afltables.R | 12 - tests/testthat/test-helpers-footywire.R | 32 +-- tests/testthat/test-helpers-general.R | 15 - 43 files changed, 1031 insertions(+), 705 deletions(-)
Title: Estimating (Time-Dependent) Drift Diffusion Models
Description: Fit and explore Drift Diffusion Models (DDMs),
a common tool in psychology for describing decision processes in simple
tasks. It can handle both time-independent and time-dependent DDMs. You
either choose prebuilt models or create your own, and the package takes
care of model predictions and parameter estimation. Model predictions
are derived via the numerical solutions provided by Richter, Ulrich, and
Janczyk (2023, <doi:10.1016/j.jmp.2023.102756>).
Author: Valentin Koob [cre, aut, cph],
Thomas Richter [aut, cph],
Markus Janczyk [aut]
Maintainer: Valentin Koob <v.koob@web.de>
Diff between dRiftDM versions 0.3.2 dated 2026-06-06 and 0.3.3 dated 2026-08-23
DESCRIPTION | 6 MD5 | 42 +-- NEWS.md | 371 +++++++++++++++--------------- R/core_bayes_estimate.R | 6 R/core_dm.R | 1 R/models.R | 37 +- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 inst/doc/dRiftDM.R | 8 inst/doc/dRiftDM.Rmd | 8 inst/doc/model_recovery.R | 1 inst/doc/model_recovery.Rmd | 1 inst/doc/model_recovery.html | 21 - inst/doc/predictions_simple_ddm.R | 4 inst/doc/predictions_simple_ddm.Rmd | 4 inst/doc/predictions_simple_ddm.html | 4 tests/testthat/test-core_bayes_estimate.R | 3 vignettes/dRiftDM.Rmd | 8 vignettes/model_recovery.Rmd | 1 vignettes/predictions_simple_ddm.Rmd | 4 22 files changed, 264 insertions(+), 270 deletions(-)
Title: Fast Strength-t Coverage Verification for Covering Arrays
Description: Verifies that an array covers every t-way interaction, the
certificate check for covering arrays, using compiled C code with
optional 'OpenMP' threading. Missing values are treated as wildcard
("flexible") entries that count as every symbol. Designed to be easy
to embed in other packages: a single C file with a registered .Call
entry point and one R wrapper.
Author: Christopher Smolen [aut, cre]
Maintainer: Christopher Smolen <chrispbsmolen@gmail.com>
Diff between caverify versions 0.1.2 dated 2026-08-20 and 0.1.3 dated 2026-08-23
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 10 ++++++++++ src/ca_verify.c | 49 +++++++++++++++++++++++++++++-------------------- 4 files changed, 45 insertions(+), 26 deletions(-)
Title: Pathwise Estimation of Covariate Balancing Propensity Scores
Description: Provides pathwise estimation of regularized logistic propensity
score models using covariate balancing loss functions rather than maximum
likelihood. Regularization paths are fit via the 'adelie' elastic-net
solver with a 'glmnet'-like interface, yielding balancing weights that target
covariate balance for the ATE and ATT. Under lasso penalization, lambda
bounds the maximum covariate imbalance, so the regularization path traces a
sequence of decreasing imbalance tolerances. For details, see Sverdrup &
Hastie (2026) <doi:10.48550/arXiv.2602.18577>.
Author: Erik Sverdrup [aut, cre],
Trevor Hastie [aut],
James Yang [ctb]
Maintainer: Erik Sverdrup <erik.sverdrup@gmail.com>
Diff between balnet versions 0.0.3 dated 2026-05-25 and 0.0.4 dated 2026-08-23
DESCRIPTION | 10 +- MD5 | 14 +-- R/balnet.R | 7 + R/cv.balnet.R | 85 ++++++++++++++++++++---- inst/include/adelie_core/solver/solver_base.hpp | 6 + inst/include/adelie_core/solver/utils.hpp | 4 - man/balnet.Rd | 4 - man/cv.balnet.Rd | 19 ++++- 8 files changed, 113 insertions(+), 36 deletions(-)
Title: Weighted Scores Method for Regression Models with Dependent Data
Description: The weighted scores method and composite likelihood information criteria as an intermediate step for variable/correlation selection for longitudinal ordinal and count data in Nikoloulopoulos, Joe and Chaganty (2011) <doi:10.1093/biostatistics/kxr005>, Nikoloulopoulos (2016) <doi:10.1002/sim.6871> and Nikoloulopoulos (2017) <doi:10.1080/00949655.2020.1759602>.
Author: Aristidis K. Nikoloulopoulos [aut, cre],
Harry Joe [aut]
Maintainer: Aristidis K. Nikoloulopoulos <a.nikoloulopoulos@uea.ac.uk>
Diff between weightedScores versions 0.9.5.3 dated 2020-03-23 and 0.9.5.4 dated 2026-08-23
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- build/partial.rdb |binary man/CLIC.Rd | 12 ++++++------ man/godambe.Rd | 6 ++---- man/solvewtsc.Rd | 6 ++---- man/weightMat.Rd | 6 ++---- man/weightedScores-package.Rd | 12 +++++------- man/wtsc.Rd | 6 ++---- man/wtsc.wrapper.Rd | 6 ++---- 10 files changed, 35 insertions(+), 47 deletions(-)
More information about weightedScores at CRAN
Permanent link
Title: Fast Calculation of Feature Contributions in Boosting Trees
Description: Computes feature-specific R-squared (R2) contributions for
boosting tree models using a Shapley-value-based decomposition of the
total R-squared in polynomial time. Supports models fitted with
'XGBoost', 'LightGBM', and 'CatBoost', with optimized backend-specific
implementations and cached tree summaries suitable for large-scale
problems. Multiple
visualization tools are included for interpreting and communicating
feature contributions. The methodology is described in Jiang, Zhang,
and Zhang (2025) <doi:10.48550/arXiv.2407.03515>. Optional 'CatBoost'
support uses the R package 'catboost', which is not distributed on CRAN;
installation instructions and released binaries are provided by the
CatBoost project at <https://catboost.ai/docs/en/concepts/r-installation>.
Author: Steven He [aut],
Zhongli Jiang [aut, cre],
Dabao Zhang [aut]
Maintainer: Zhongli Jiang <zhongli.jiang.stats@gmail.com>
Diff between qshap versions 1.0.1 dated 2026-05-04 and 2.0.0 dated 2026-08-23
DESCRIPTION | 10 MD5 | 77 ++-- NAMESPACE | 3 R/RcppExports.R | 16 + R/catboost_fast_backend.R |only R/catboost_utils.R | 670 ++++++++++++++++++++++++++++++++++++++---- R/classes.R | 118 ++++++- R/get_tree.R |only R/lightgbm_utils.R | 198 +++++------- R/qshap-package.R | 2 R/tree_explainer.R | 177 ++++++----- R/tree_summary.R | 8 R/vis_module.R | 631 ++++++++++++++++++++++++++++++++++----- R/xgboost_utils.R | 15 man/gazer.Rd | 4 man/get_tree.Rd |only man/loss.Rd | 2 man/new_qshap_result.Rd | 10 man/new_simple_tree.Rd | 11 man/new_tree_summary.Rd | 8 man/plot.qshap_rsq.Rd | 7 man/plot_loss_heatmap.Rd |only man/plot_qshap.Rd | 6 man/qshap-package.Rd | 2 man/qshap.Rd | 13 man/qshap_result.Rd | 10 man/qshap_rsq.Rd | 28 - man/rsq.Rd | 25 + man/simple_tree.Rd | 11 man/tree_summary.Rd | 8 man/vis.Rd | 1 src/RcppExports.cpp | 60 +++ src/catboost_fast.cpp |only src/catboost_fused_router.h |only src/catboost_oblivious_core.h |only src/general_tree_ol2d.cpp |only src/general_tree_ol2d.h |only src/qshap.cpp | 316 +++++++++++++------ src/utils.cpp | 26 + src/utils.h | 16 + tests |only 41 files changed, 1948 insertions(+), 541 deletions(-)
Title: Tools for Supply Chain Management, Demand and Supply Planning
Description: Perform flexible and quick calculations for Demand and Supply Planning, such as projected inventories and coverages, as well as replenishment plan. For any time bucket, daily, weekly or monthly, and any granularity level, product or group of products.
Author: Nicolas Nguyen [aut, cre]
Maintainer: Nicolas Nguyen <nikonguyen@yahoo.fr>
Diff between planr versions 0.6.4 dated 2026-03-28 and 0.6.5 dated 2026-08-23
DESCRIPTION | 8 ++-- MD5 | 15 ++++++--- NAMESPACE | 1 R/data.R | 23 ++++++++++++++ R/inv_to_cov.R |only README.md | 64 ++++++++++++++++++++++++++++++++++++++- data/inventories_data.rda |only man/inv_to_cov.Rd |only man/inventories_data.Rd |only tests/testthat/test-alloc_dmd.R | 2 - tests/testthat/test-inv_to_cov.R |only 11 files changed, 102 insertions(+), 11 deletions(-)
Title: Betas-Select in Structural Equation Models and Linear Models
Description: It computes betas-select, coefficients after standardization in
structural equation models and regression models, standardizing only selected
variables. Supports models with moderation, with product terms formed after
standardization. It also offers confidence intervals that account for
standardization, including bootstrap confidence intervals as proposed by
Cheung et al. (2022) <doi:10.1037/hea0001188>. An introduction to the package
can be found in Sun et al. (2026) <doi:10.1080/00273171.2026.2672692>.
Author: Shu Fai Cheung [aut, cre] ,
Rong Wei Sun [aut] ,
Florbela Chang [aut] ,
Wendie Yang [aut] ,
Sing-Hang Cheung [aut]
Maintainer: Shu Fai Cheung <shufai.cheung@gmail.com>
Diff between betaselectr versions 0.2.2 dated 2026-07-11 and 0.2.3 dated 2026-08-23
DESCRIPTION | 10 ++++----- MD5 | 19 ++++++++++-------- NEWS.md | 16 +++++++++++++++ R/lav_betaselect.R | 2 - R/lm_betaselect.R | 25 ++++++++++++++++++++++-- R/lm_betaselect_helpers.R | 2 - README.md | 2 - man/lav_betaselect.Rd | 2 - man/lm_betaselect.Rd | 6 ++++- tests/testthat/test_glm_betaselect_glm_object.R |only tests/testthat/test_lm_betaselect_lm_object.R |only tests/testthat/test_lm_betaselect_tibble.R |only 12 files changed, 64 insertions(+), 20 deletions(-)
Title: Feature Selection for 'mlr3'
Description: Feature selection package of the 'mlr3' ecosystem. It selects
the optimal feature set for any 'mlr3' learner. The package works with
several optimization algorithms e.g. Random Search, Recursive Feature
Elimination, and Genetic Search. Moreover, it can automatically
optimize learners and estimate the performance of optimized feature
sets with nested resampling.
Author: Marc Becker [aut, cre] ,
Patrick Schratz [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
John Zobolas [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 1.6.0 dated 2026-05-21 and 1.7.0 dated 2026-08-23
DESCRIPTION | 12 MD5 | 199 +++---- NAMESPACE | 27 - NEWS.md | 34 + R/ArchiveAsyncFSelect.R | 22 R/ArchiveAsyncFSelectFrozen.R | 2 R/ArchiveBatchFSelect.R | 12 R/AutoFSelector.R | 86 +-- R/EnsembleFSResult.R | 88 +-- R/FSelector.R | 16 R/FSelectorAsyncFromOptimizerAsync.R | 2 R/FSelectorBatchDesignPoints.R | 4 R/FSelectorBatchGeneticSearch.R | 6 R/FSelectorBatchRFE.R | 30 - R/FSelectorBatchRFECV.R | 14 R/FSelectorBatchSequential.R | 46 - R/FSelectorBatchShadowVariableSearch.R | 72 +- R/ObjectiveFSelectAsync.R | 11 R/ObjectiveFSelectBatch.R | 12 R/auto_fselector.R | 2 R/embedded_ensemble_fselect.R | 6 R/ensemble_fselect.R | 13 R/extract_inner_fselect_archives.R | 4 R/extract_inner_fselect_results.R | 3 R/fselect.R | 89 +-- R/helper.R | 18 R/mlr_callbacks.R | 108 ++-- R/sugar.R | 8 R/zzz.R | 21 README.md | 19 build/partial.rdb |binary inst/CITATION |only inst/WORDLIST | 1 man/ArchiveAsyncFSelect.Rd | 366 +++++++------- man/ArchiveAsyncFSelectFrozen.Rd | 273 +++++----- man/ArchiveBatchFSelect.Rd | 346 ++++++------- man/AutoFSelector.Rd | 317 ++++++------ man/CallbackAsyncFSelect.Rd | 72 +- man/CallbackBatchFSelect.Rd | 66 +- man/ContextAsyncFSelect.Rd | 70 +- man/ContextBatchFSelect.Rd | 70 +- man/FSelectInstanceAsyncMultiCrit.Rd | 148 ++--- man/FSelectInstanceAsyncSingleCrit.Rd | 151 ++--- man/FSelectInstanceBatchMultiCrit.Rd | 183 +++---- man/FSelectInstanceBatchSingleCrit.Rd | 186 +++---- man/FSelector.Rd | 188 +++---- man/FSelectorAsync.Rd | 82 +-- man/FSelectorAsyncFromOptimizerAsync.Rd | 127 ++--- man/FSelectorBatch.Rd | 131 ++--- man/FSelectorBatchFromOptimizerBatch.Rd | 117 ++-- man/ObjectiveFSelect.Rd | 129 ++--- man/ObjectiveFSelectAsync.Rd | 54 +- man/ObjectiveFSelectBatch.Rd | 122 ++-- man/auto_fselector.Rd | 2 man/embedded_ensemble_fselect.Rd | 16 man/ensemble_fs_result.Rd | 481 ++++++++++--------- man/ensemble_fselect.Rd | 11 man/figures/logo.png |binary man/fselect.Rd | 9 man/mlr3fselect-package.Rd | 1 man/mlr3fselect.backup.Rd | 5 man/mlr3fselect.one_se_rule.Rd | 4 man/mlr3fselect.svm_rfe.Rd | 10 man/mlr_fselectors.Rd | 4 man/mlr_fselectors_async_design_points.Rd | 68 +- man/mlr_fselectors_async_exhaustive_search.Rd | 100 ++- man/mlr_fselectors_async_random_search.Rd | 68 +- man/mlr_fselectors_design_points.Rd | 72 +- man/mlr_fselectors_exhaustive_search.Rd | 68 +- man/mlr_fselectors_genetic_search.Rd | 72 +- man/mlr_fselectors_random_search.Rd | 68 +- man/mlr_fselectors_rfe.Rd | 71 +- man/mlr_fselectors_rfecv.Rd | 74 +- man/mlr_fselectors_sequential.Rd | 107 ++-- man/mlr_fselectors_shadow_variable_search.Rd | 106 ++-- man/reexports.Rd | 4 tests/testthat/test_ArchiveAsyncFSelect.R | 56 +- tests/testthat/test_ArchiveAsyncFSelectFrozen.R | 2 tests/testthat/test_ArchiveBatchFSelect.R | 73 ++ tests/testthat/test_AutoFSelector.R | 106 +++- tests/testthat/test_CallbackAsyncFSelect.R | 18 tests/testthat/test_FSelectInstanceAsyncMultiCrit.R | 12 tests/testthat/test_FSelectInstanceAsyncSingleCrit.R | 51 +- tests/testthat/test_FSelectInstanceSingleCrit.R | 18 tests/testthat/test_FSelectorRFE.R | 36 + tests/testthat/test_FSelectorRFECV.R | 109 ++++ tests/testthat/test_FSelectorSequential.R | 20 tests/testthat/test_FSelectorShadowVariableSearch.R | 16 tests/testthat/test_ObjectiveFSelect.R | 12 tests/testthat/test_ObjectiveFSelectAsync.R | 8 tests/testthat/test_auto_fselector.R | 4 tests/testthat/test_embedded_ensemble_fselect.R | 34 + tests/testthat/test_ensemble_fselect.R | 143 +++++ tests/testthat/test_extract_inner_fselect_archives.R | 71 ++ tests/testthat/test_extract_inner_fselect_result.R | 70 +- tests/testthat/test_fselect.R | 21 tests/testthat/test_fselect_nested.R | 4 tests/testthat/test_fsi.R | 8 tests/testthat/test_fsi_async.R | 4 tests/testthat/test_mlr_callbacks.R | 93 +++ tests/testthat/test_mlr_fselectors.R | 24 101 files changed, 3769 insertions(+), 2850 deletions(-)
Title: Psychometric Analysis with Rasch Measurement Theory
Description: Streamlines reproducible Rasch measurement theory analyses
for ordinal item-response data, combining estimation routines from
'eRm', 'psychotools', 'mirt', 'iarm', and 'lavaan' with consistent
diagnostic, plotting, and reporting layers. Covers the four basic
psychometric criteria summarised by Christensen et al. (2021)
<doi:10.1111/sms.13908> -- unidimensionality, local independence,
ordered response category thresholds, and invariance across
subgroups -- together with item fit, targeting, reliability,
category functioning, and descriptive item-response plots. A
distinguishing feature is the use of simulation-based critical
values to replace rule-of-thumb cutoffs for conditional infit mean-square,
Yen's Q3 local-dependence statistic, the largest residual-PCA eigenvalue,
ordinal CFA fit indices, and partial-gamma DIF and local-dependence
coefficients, optionally augmented with multiplicity-corrected bootstrap
p-values. Outputs are knitr::kable() tables and
'ggplot2' figures suitab [...truncated...]
Author: Magnus Johansson [aut, cre] ,
Nicklas Korsell [ctb] ,
Mirka Henninger [ctb] ,
Jan Radek [ctb]
Maintainer: Magnus Johansson <pgmj@pm.me>
Diff between easyRasch2 versions 1.1.1 dated 2026-08-04 and 1.2.0 dated 2026-08-23
DESCRIPTION | 6 MD5 | 115 +++-- NEWS.md | 117 +++++ R/bootstrap_restscore.R | 15 R/cfa_cutoff.R | 15 R/cicc_plot.R | 91 ++++ R/conditional_infit.R | 125 ++++-- R/conditional_infit_mi.R | 15 R/dif_partgam.R | 15 R/dif_tree.R | 7 R/infit_cutoff.R | 46 ++ R/infit_cutoff_mi.R | 12 R/infitcutoff_plot.R | 35 + R/ld_partgam.R | 496 +++++++++++++++++++++---- R/local_dependence.R | 155 ++++++- R/martin_lof.R | 345 ++++++++++------- R/person_fit.R | 29 + R/reliability.R | 34 + R/residual_pca.R | 15 R/utils-multiplicity.R | 376 ++++++++++++++++++ R/utils-validation.R | 39 + R/zzz_reproducibility.R |only README.md | 96 ++-- inst/doc/easyRasch2.Rmd | 90 ++-- inst/doc/easyRasch2.html | 202 +++++++--- man/RMdifGammaCutoff.Rd | 4 man/RMdimCFACutoff.Rd | 4 man/RMdimMartinLof.Rd | 73 ++- man/RMdimMartinLofResiduals.Rd | 20 - man/RMdimResidualPCACutoff.Rd | 4 man/RMitemICCPlot.Rd | 8 man/RMitemInfit.Rd | 39 + man/RMitemInfitCutoff.Rd | 34 + man/RMitemInfitCutoffMI.Rd | 14 man/RMitemInfitMI.Rd | 11 man/RMitemInfitPlot.Rd | 4 man/RMitemRestscoreBoot.Rd | 4 man/RMlocdepGamma.Rd | 30 - man/RMlocdepGammaCutoff.Rd | 28 + man/RMlocdepQ3.Rd | 30 + man/RMlocdepQ3Cutoff.Rd | 20 - man/RMpersonFit.Rd | 8 man/RMreliability.Rd | 4 man/easyRasch2-reproducibility.Rd |only tests/testthat/test-cicc_plot.R | 81 ++++ tests/testthat/test-conditional_infit.R | 6 tests/testthat/test-infit-flagging-defaults.R |only tests/testthat/test-infit_pvalue.R | 18 tests/testthat/test-ld_partgam_gamma.R |only tests/testthat/test-local_dependence.R | 6 tests/testthat/test-locdep-flagging-defaults.R |only tests/testthat/test-martin_lof.R | 104 ++++- tests/testthat/test-parallel-reproducibility.R |only tests/testthat/test-partgam_ld.R | 46 +- tests/testthat/test-person_fit.R | 34 + tests/testthat/test-reliability.R | 21 + tests/testthat/test-rounding.R |only vignettes/easyRasch2.Rmd | 90 ++-- vignettes/easyRasch2.Rmd.orig | 16 vignettes/figures/rasch-dif-cicc-1.png |binary vignettes/figures/rasch-personfit-1.png |binary vignettes/references.bib | 9 62 files changed, 2620 insertions(+), 641 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') Driver Manager
Description: Provides a developer-facing interface to 'Arrow' Database
Connectivity ('ADBC') for the purposes of driver development, driver
testing, and building high-level database interfaces for users. 'ADBC'
<https://arrow.apache.org/adbc/> is an API standard for database access
libraries that uses 'Arrow' for result sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcdrivermanager versions 0.24.0-1 dated 2026-07-30 and 0.24.0-2 dated 2026-08-23
DESCRIPTION | 6 MD5 | 10 src/c/driver_manager/adbc_driver_manager_profiles.cc | 2 src/c/vendor/nanoarrow/nanoarrow.c | 590 ++++++++++++++++--- src/c/vendor/nanoarrow/nanoarrow.h | 122 +++ src/c/vendor/nanoarrow/nanoarrow.hpp | 2 6 files changed, 646 insertions(+), 86 deletions(-)
More information about adbcdrivermanager at CRAN
Permanent link
Title: Version, Share, Deploy, and Monitor Models
Description: The goal of 'vetiver' is to provide fluent tooling to
version, share, deploy, and monitor a trained model. Functions handle
both recording and checking the model's input data prototype, and
predicting from a remote API endpoint. The 'vetiver' package is
extensible, with generics that can support many kinds of models.
Author: Julia Silge [cre, aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Julia Silge <julia.silge@posit.co>
Diff between vetiver versions 0.2.7 dated 2025-12-13 and 0.2.8 dated 2026-08-23
vetiver-0.2.7/vetiver/inst/pima_Learner.R |only vetiver-0.2.8/vetiver/DESCRIPTION | 8 vetiver-0.2.8/vetiver/MD5 | 46 ++-- vetiver-0.2.8/vetiver/NAMESPACE | 46 ++-- vetiver-0.2.8/vetiver/NEWS.md | 4 vetiver-0.2.8/vetiver/R/dashboard.R | 2 vetiver-0.2.8/vetiver/R/monitor.R | 4 vetiver-0.2.8/vetiver/R/write-plumber.R | 2 vetiver-0.2.8/vetiver/build/vignette.rds |binary vetiver-0.2.8/vetiver/inst/doc/vetiver.R | 10 vetiver-0.2.8/vetiver/inst/doc/vetiver.Rmd | 12 - vetiver-0.2.8/vetiver/inst/doc/vetiver.html | 133 ++++++------ vetiver-0.2.8/vetiver/inst/penguins_Learner.R |only vetiver-0.2.8/vetiver/man/reexports.Rd | 2 vetiver-0.2.8/vetiver/man/vetiver-package.Rd | 5 vetiver-0.2.8/vetiver/man/vetiver_api.Rd | 2 vetiver-0.2.8/vetiver/man/vetiver_compute_metrics.Rd | 2 vetiver-0.2.8/vetiver/man/vetiver_dashboard.Rd | 4 vetiver-0.2.8/vetiver/man/vetiver_plot_metrics.Rd | 2 vetiver-0.2.8/vetiver/man/vetiver_write_plumber.Rd | 2 vetiver-0.2.8/vetiver/tests/testthat/_snaps/mlr3.md | 6 vetiver-0.2.8/vetiver/tests/testthat/_snaps/sagemaker.md | 2 vetiver-0.2.8/vetiver/tests/testthat/_snaps/write-docker.md | 12 + vetiver-0.2.8/vetiver/tests/testthat/test-mlr3.R | 31 +- vetiver-0.2.8/vetiver/vignettes/vetiver.Rmd | 12 - 25 files changed, 198 insertions(+), 151 deletions(-)
Title: A Universal Approach for Causal Mediation Analysis
Description: This program realizes a universal estimation approach that accommodates
multi-category variables and effect scales, making up for the deficiencies
of the existing approaches when dealing with non-binary exposures and
complex models. The estimation via bootstrapping can simultaneously provide results of
causal mediation on risk difference (RD), odds ratio (OR) and risk ratio (RR) scales with tests of the effects' difference.
The estimation is also applicable to many other settings, e.g., moderated mediation, inconsistent covariates,
panel data, etc. The high flexibility and compatibility
make it possible to apply for any type of model, greatly meeting the needs of
current empirical researches.
Author: Tianbao Zhou [aut, cre],
Xinghao Li [aut]
Maintainer: Tianbao Zhou <michaelzhou@buaa.edu.cn>
Diff between unvs.med versions 1.1.1 dated 2026-06-30 and 1.1.2 dated 2026-08-23
DESCRIPTION | 14 ++++++-------- MD5 | 4 ++-- NEWS.md | 5 ++++- 3 files changed, 12 insertions(+), 11 deletions(-)
Title: Generalized Kumaraswamy Distribution Family
Description: Implements the five-parameter Generalized Kumaraswamy ('gkw')
distribution proposed by 'Carrasco, Ferrari and Cordeiro (2010)'
<doi:10.48550/arXiv.1004.0911> and its seven nested sub-families for
modeling bounded continuous data on the unit interval (0,1). The 'gkw'
distribution extends the Kumaraswamy distribution described by Jones (2009)
<doi:10.1016/j.stamet.2008.04.001>. Provides density, distribution,
quantile, and random generation functions, along with analytical
log-likelihood, gradient, and Hessian functions implemented in 'C++' via
'RcppArmadillo' for maximum computational efficiency. Suitable for modeling
proportions, rates, percentages, and indices exhibiting complex features
such as asymmetry, or heavy tails and other shapes not adequately captured by
standard distributions like simple Beta or Kumaraswamy.
Author: Jose Evandeilton Lopes [aut, cre]
Maintainer: Jose Evandeilton Lopes <evandeilton@gmail.com>
Diff between gkwdist versions 1.1.4 dated 2026-05-28 and 1.1.5 dated 2026-08-23
gkwdist-1.1.4/gkwdist/inst/paper |only gkwdist-1.1.5/gkwdist/DESCRIPTION | 8 gkwdist-1.1.5/gkwdist/MD5 | 41 gkwdist-1.1.5/gkwdist/NEWS.md | 111 + gkwdist-1.1.5/gkwdist/README.md | 19 gkwdist-1.1.5/gkwdist/build/partial.rdb |binary gkwdist-1.1.5/gkwdist/build/vignette.rds |binary gkwdist-1.1.5/gkwdist/inst/CITATION | 14 gkwdist-1.1.5/gkwdist/inst/doc/into-gkwdist.html | 53 gkwdist-1.1.5/gkwdist/inst/doc/theory-gkwdist.Rmd | 480 +++--- gkwdist-1.1.5/gkwdist/inst/doc/theory-gkwdist.html | 786 ++++++---- gkwdist-1.1.5/gkwdist/src/bkw.cpp | 396 +---- gkwdist-1.1.5/gkwdist/src/ekw.cpp | 340 +--- gkwdist-1.1.5/gkwdist/src/gkw.cpp | 16 gkwdist-1.1.5/gkwdist/src/kkw.cpp | 512 +----- gkwdist-1.1.5/gkwdist/src/kw.cpp | 2 gkwdist-1.1.5/gkwdist/src/utils.h | 15 gkwdist-1.1.5/gkwdist/tests/testthat/test-boundary-derivatives.R |only gkwdist-1.1.5/gkwdist/tests/testthat/test-density-correctness.R |only gkwdist-1.1.5/gkwdist/tests/testthat/test-mle-performance.R | 15 gkwdist-1.1.5/gkwdist/vignettes/theory-gkwdist.Rmd | 480 +++--- 21 files changed, 1634 insertions(+), 1654 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Bryce Mecum [aut],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb], [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 25.0.0 dated 2026-07-16 and 25.0.1 dated 2026-08-23
arrow-25.0.0/arrow/tools/checksums/r-libarrow-darwin-arm64-25.0.0.zip.sha512 |only arrow-25.0.0/arrow/tools/checksums/r-libarrow-darwin-x86_64-25.0.0.zip.sha512 |only arrow-25.0.0/arrow/tools/checksums/r-libarrow-linux-arm64-25.0.0.zip.sha512 |only arrow-25.0.0/arrow/tools/checksums/r-libarrow-linux-x86_64-25.0.0.zip.sha512 |only arrow-25.0.0/arrow/tools/checksums/r-libarrow-windows-x86_64-25.0.0.zip.sha512 |only arrow-25.0.0/arrow/tools/cpp/src/arrow/util/bpacking_simd_128_alt.cc |only arrow-25.0.1/arrow/DESCRIPTION | 8 arrow-25.0.1/arrow/MD5 | 41 - arrow-25.0.1/arrow/NAMESPACE | 244 +++++----- arrow-25.0.1/arrow/NEWS.md | 16 arrow-25.0.1/arrow/R/type.R | 2 arrow-25.0.1/arrow/man/infer_type.Rd | 2 arrow-25.0.1/arrow/src/type_infer.cpp | 2 arrow-25.0.1/arrow/tools/checksums/r-libarrow-darwin-arm64-25.0.1.zip.sha512 |only arrow-25.0.1/arrow/tools/checksums/r-libarrow-darwin-x86_64-25.0.1.zip.sha512 |only arrow-25.0.1/arrow/tools/checksums/r-libarrow-linux-arm64-25.0.1.zip.sha512 |only arrow-25.0.1/arrow/tools/checksums/r-libarrow-linux-x86_64-25.0.1.zip.sha512 |only arrow-25.0.1/arrow/tools/checksums/r-libarrow-windows-x86_64-25.0.1.zip.sha512 |only arrow-25.0.1/arrow/tools/cpp/CMakeLists.txt | 2 arrow-25.0.1/arrow/tools/cpp/cmake_modules/ThirdpartyToolchain.cmake | 12 arrow-25.0.1/arrow/tools/cpp/meson.build | 2 arrow-25.0.1/arrow/tools/cpp/src/arrow/CMakeLists.txt | 28 - arrow-25.0.1/arrow/tools/cpp/src/arrow/util/bpacking.cc | 7 arrow-25.0.1/arrow/tools/cpp/src/arrow/util/bpacking_benchmark.cc | 5 arrow-25.0.1/arrow/tools/cpp/src/arrow/util/bpacking_simd_internal.h | 28 - arrow-25.0.1/arrow/tools/cpp/thirdparty/versions.txt | 4 arrow-25.0.1/arrow/tools/cpp/vcpkg.json | 2 27 files changed, 211 insertions(+), 194 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-08-09 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-17 2.2.2
2026-06-16 2.0.0
2025-11-19 1.0.8
2025-11-03 1.0.7
2025-10-29 1.0.5
Title: Statistical Methods for Quantitative Finance
Description: Provides data and functions used in the book "Statistical Methods for Quantitative Finance"
by David Ardia (2026).
Author: David Ardia [aut, cre, cph, fnd] ,
Marius Hofert [ctb, cph] ,
Kurt Hornik [ctb, cph] ,
Alexander J. McNeil [ctb, cph] ,
Dries Cornilly [ctb, cph] was ported under GPL-2 | GPL-3),
Kris Boudt [ctb, cph] was ported under GPL-2 | GPL-3)
Maintainer: David Ardia <david.ardia.ch@gmail.com>
Diff between smqf versions 1.1-1 dated 2026-06-01 and 1.1-7 dated 2026-08-23
smqf-1.1-1/smqf/R/FamaFrenchMonthly.R |only smqf-1.1-1/smqf/R/FamaFrenchWeekly.R |only smqf-1.1-1/smqf/data/FamaFrenchMonthly.rda |only smqf-1.1-1/smqf/data/FamaFrenchWeekly.rda |only smqf-1.1-1/smqf/man/FamaFrenchMonthly.Rd |only smqf-1.1-1/smqf/man/FamaFrenchWeekly.Rd |only smqf-1.1-7/smqf/DESCRIPTION | 41 - smqf-1.1-7/smqf/MD5 | 118 +-- smqf-1.1-7/smqf/NAMESPACE | 22 smqf-1.1-7/smqf/NEWS.md | 320 ++++++++ smqf-1.1-7/smqf/R/DJ_const.R | 18 smqf-1.1-7/smqf/R/EURSTX_const.R | 24 smqf-1.1-7/smqf/R/FTSE_const.R | 19 smqf-1.1-7/smqf/R/FamaFrench.R |only smqf-1.1-7/smqf/R/Fred.R | 71 + smqf-1.1-7/smqf/R/FungHsieh.R | 93 +- smqf-1.1-7/smqf/R/GoyalWelch.R | 76 + smqf-1.1-7/smqf/R/SP500_const.R |only smqf-1.1-7/smqf/R/TermStructure.R | 47 - smqf-1.1-7/smqf/R/clayton-copula.R | 38 smqf-1.1-7/smqf/R/display-copula.R | 34 smqf-1.1-7/smqf/R/efficient-frontier.R | 339 ++++++-- smqf-1.1-7/smqf/R/extdata.R |only smqf-1.1-7/smqf/R/gumbel-copula.R | 16 smqf-1.1-7/smqf/R/mdp.R |only smqf-1.1-7/smqf/R/mvsk-portfolios.R |only smqf-1.1-7/smqf/R/normal-copula.R | 59 + smqf-1.1-7/smqf/R/portfolio-moments.R | 18 smqf-1.1-7/smqf/R/ptf-max-u.R | 37 smqf-1.1-7/smqf/R/smqf-package.R | 26 smqf-1.1-7/smqf/R/student-copula.R | 63 + smqf-1.1-7/smqf/R/tail-dependence.R | 37 smqf-1.1-7/smqf/README.md | 29 smqf-1.1-7/smqf/data/FamaFrench.rda |only smqf-1.1-7/smqf/data/Fred.rda |binary smqf-1.1-7/smqf/data/FungHsieh.rda |binary smqf-1.1-7/smqf/data/GoyalWelch.rda |binary smqf-1.1-7/smqf/data/SP500_const.rda |only smqf-1.1-7/smqf/data/TermStructure.rda |binary smqf-1.1-7/smqf/inst/CITATION | 8 smqf-1.1-7/smqf/man/DJ_const.Rd | 20 smqf-1.1-7/smqf/man/EURSTX_const.Rd | 26 smqf-1.1-7/smqf/man/FTSE_const.Rd | 21 smqf-1.1-7/smqf/man/FamaFrench.Rd |only smqf-1.1-7/smqf/man/Fred.Rd | 72 + smqf-1.1-7/smqf/man/FungHsieh.Rd | 95 +- smqf-1.1-7/smqf/man/GoyalWelch.Rd | 80 +- smqf-1.1-7/smqf/man/SP500_const.Rd |only smqf-1.1-7/smqf/man/TermStructure.Rd | 45 - smqf-1.1-7/smqf/man/extdata.Rd |only smqf-1.1-7/smqf/man/f_clayton_copula_2d_pdf.Rd | 8 smqf-1.1-7/smqf/man/f_display_copula.Rd | 9 smqf-1.1-7/smqf/man/f_efficient_frontier.Rd | 78 +- smqf-1.1-7/smqf/man/f_gumbel_copula_2d_pdf.Rd | 6 smqf-1.1-7/smqf/man/f_mdp.Rd |only smqf-1.1-7/smqf/man/f_mvsk_portfolio.Rd |only smqf-1.1-7/smqf/man/f_normal_copula_pdf.Rd | 17 smqf-1.1-7/smqf/man/f_portfolio_moments.Rd | 3 smqf-1.1-7/smqf/man/f_ptf_max_U.Rd | 8 smqf-1.1-7/smqf/man/f_student_copula_pdf.Rd | 17 smqf-1.1-7/smqf/man/f_tail_dependence.Rd | 9 smqf-1.1-7/smqf/man/smqf.Rd | 28 smqf-1.1-7/smqf/tests/testthat/test-copula-reference.R |only smqf-1.1-7/smqf/tests/testthat/test-datasets.R | 579 +++++++++++++-- smqf-1.1-7/smqf/tests/testthat/test-efficient-frontier.R | 304 ++++++- smqf-1.1-7/smqf/tests/testthat/test-mdp.R |only smqf-1.1-7/smqf/tests/testthat/test-mvsk-portfolio.R |only smqf-1.1-7/smqf/tests/testthat/test-normal-copula.R | 29 smqf-1.1-7/smqf/tests/testthat/test-portfolio-moments.R |only smqf-1.1-7/smqf/tests/testthat/test-student-copula.R | 67 + smqf-1.1-7/smqf/tests/testthat/test-tail-dependence.R | 11 71 files changed, 2503 insertions(+), 582 deletions(-)
Title: Decision-Theoretic Causal Diagnostics via Experiment Deficiency
Description: Implements a deficiency-theoretic framework for causal inference,
grounded in the classical theory of statistical experiment comparison,
as described in Akdemir (2026) <doi:10.5281/zenodo.21877511>. Provides
theorem-backed bounds together with computable proxy diagnostics for
information loss from confounding, selection bias, and distributional
shift. Supports continuous, binary, count, survival, and competing risks
outcomes. Key features include propensity-score total-variation deficiency
proxies, negative control diagnostics, policy regret bounds, and
sensitivity analysis via confounding frontiers.
Author: Deniz Akdemir [aut, cre]
Maintainer: Deniz Akdemir <deniz.akdemir.work@gmail.com>
Diff between causaldef versions 0.2.0 dated 2026-03-31 and 0.2.1 dated 2026-08-23
DESCRIPTION | 13 MD5 | 133 ++-- NEWS.md | 28 R/aaa-classes.R | 2 R/api.R | 6 R/causaldef-package.R | 8 R/competing_risks.R | 2 R/confounding_frontier.R | 121 ++-- R/data_auditor.R | 2 R/deficiency.R | 6 R/frontdoor.R | 2 R/instrumental_variables.R | 2 R/negative_controls.R | 2 R/policy_bounds.R | 2 R/shiny_app.R | 2 R/theorem_bounds.R | 6 README.md | 231 ++------ build/vignette.rds |binary inst/CITATION | 6 inst/doc/advanced_analysis.Rmd | 38 - inst/doc/advanced_analysis.html | 559 +++++++++++-------- inst/doc/causaldef_methodology.R | 46 - inst/doc/causaldef_methodology.Rmd | 36 - inst/doc/causaldef_methodology.html | 676 +++++++++++++---------- inst/doc/classical_benchmarks.Rmd | 2 inst/doc/classical_benchmarks.html | 482 +++++++++-------- inst/doc/complete_workflow.R | 263 ++++----- inst/doc/complete_workflow.Rmd | 115 ++-- inst/doc/complete_workflow.html | 990 ++++++++++++++++++++--------------- inst/doc/data_auditing.html | 582 +++++++++++--------- inst/doc/introduction.R | 1 inst/doc/introduction.Rmd | 21 inst/doc/introduction.html | 577 +++++++++++--------- inst/doc/negative_controls.R | 1 inst/doc/negative_controls.Rmd | 10 inst/doc/negative_controls.html | 476 +++++++++------- inst/doc/policy_and_transport.html | 515 ++++++++++-------- inst/doc/policy_learning.R | 16 inst/doc/policy_learning.Rmd | 34 - inst/doc/policy_learning.html | 655 ++++++++++++----------- inst/doc/sensitivity_analysis.Rmd | 4 inst/doc/sensitivity_analysis.html | 595 +++++++++++---------- inst/doc/survival_analysis.R | 234 ++++---- inst/doc/survival_analysis.Rmd | 335 ++++------- inst/doc/survival_analysis.html | 680 ++++++++++++------------ man/audit_data.Rd | 2 man/causaldef-package.Rd | 8 man/confounding_frontier.Rd | 19 man/dot-deficiency_gaussian.Rd | 2 man/dot-tv_distance_normal.Rd |only man/estimate_deficiency.Rd | 6 man/estimate_deficiency_competing.Rd | 2 man/figures/README-regret-1.png |binary man/frontdoor_effect.Rd | 2 man/iv_effect.Rd | 2 man/nc_diagnostic.Rd | 2 man/policy_regret_bound.Rd | 2 man/policy_regret_bound_vc.Rd | 2 man/rkhs_rate_bound.Rd | 2 vignettes/advanced_analysis.Rmd | 38 - vignettes/causaldef_methodology.Rmd | 36 - vignettes/classical_benchmarks.Rmd | 2 vignettes/complete_workflow.Rmd | 115 ++-- vignettes/introduction.Rmd | 21 vignettes/negative_controls.Rmd | 10 vignettes/policy_learning.Rmd | 34 - vignettes/sensitivity_analysis.Rmd | 4 vignettes/survival_analysis.Rmd | 335 ++++------- 68 files changed, 4912 insertions(+), 4251 deletions(-)
Title: Automatic Toolkit for Construction, Optimization, Scoring and
Simulation of Forced-Choice Tests
Description: Forced-choice (FC) response has gained increasing popularity
and interest for its resistance to faking when well-designed (Cao &
Drasgow, 2019 <doi:10.1037/apl0000414>). To established well-designed
FC scales, typically each item within a block should measure different
trait and have similar level of social desirability (Zhang et al.,
2020 <doi:10.1177/1094428119836486>). Recent study also suggests the
importance of high inter-item agreement of social desirability between
items within a block (Pavlov et al., 2021
<doi:10.31234/osf.io/hmnrc>). In addition to this, FC developers may
also need to maximize factor loading differences (Brown &
Maydeu-Olivares, 2011 <doi:10.1177/0013164410375112>) or minimize item
location differences (Cao & Drasgow, 2019 <doi:10.1037/apl0000414>)
depending on scoring models. Decision of which items should be
assigned to the same block, also called as item pairing, is thus critical
to the quality of an FC test. Becau [...truncated...]
Author: Mengtong Li [cre, aut] ,
Tianjun Sun [aut] ,
Bo Zhang [aut]
Maintainer: Mengtong Li <mt_li@fudan.edu.cn>
Diff between autoFC versions 1.0.0.1002 dated 2026-07-14 and 1.0.0.1100 dated 2026-08-23
DESCRIPTION | 8 MD5 | 61 +++- NAMESPACE | 45 ++- NEWS.md | 10 R/build_pairwise_names.R |only R/convert_maxdiff_to_pairwise.R |only R/convert_pick_to_pairwise.R |only R/generate_cfc_mplus_syntax.R |only R/generate_gfc_lavaan_syntax.R |only R/generate_gfc_mplus_syntax.R |only R/generate_tirt_mplus_syntax.R | 543 ++++++++++++++++++------------------- R/generate_tirt_stan_syntax.R | 44 -- R/predict_cfc_stan.R |only R/predict_gfc_stan.R |only R/prepare_cfc_stan_data.R |only R/prepare_gfc_stan_data.R |only R/prepare_tirt_stan_data.R | 75 +---- R/score_cfc_lavaan.R | 11 R/score_cfc_mplus.R |only R/score_cfc_stan.R |only R/score_gfc_lavaan.R |only R/score_gfc_mplus.R |only R/score_gfc_stan.R |only R/simulate_fc_data.R | 167 +++++++---- README.md | 26 + inst/CITATION |only inst/doc/intro-to-autoFC.html | 4 inst/stan/cfc_model.stan |only inst/stan/gfc_model.stan |only man/build_pairwise_names.Rd |only man/convert_maxdiff_to_pairwise.Rd |only man/convert_pick_to_pairwise.Rd |only man/generate_cfc_mplus_syntax.Rd |only man/generate_gfc_lavaan_syntax.Rd |only man/generate_gfc_mplus_syntax.Rd |only man/generate_tirt_mplus_syntax.Rd | 4 man/generate_tirt_stan_syntax.Rd | 8 man/predict_cfc_stan.Rd |only man/predict_gfc_stan.Rd |only man/prepare_cfc_stan_data.Rd |only man/prepare_gfc_stan_data.Rd |only man/prepare_tirt_stan_data.Rd | 6 man/score_cfc_mplus.Rd |only man/score_cfc_stan.Rd |only man/score_gfc_lavaan.Rd |only man/score_gfc_mplus.Rd |only man/score_gfc_stan.Rd |only man/simulate_fc_data.Rd | 53 ++- 48 files changed, 562 insertions(+), 503 deletions(-)
Title: Forecastable Component Analysis
Description: Implementation of Forecastable Component Analysis ('ForeCA'),
including main algorithms and auxiliary function (summary, plotting, etc.) to
apply 'ForeCA' to multivariate time series data. 'ForeCA' is a novel dimension
reduction (DR) technique for temporally dependent signals. Contrary to other
popular DR methods, such as 'PCA' or 'ICA', 'ForeCA' takes time dependency
explicitly into account and searches for the most ''forecastable'' signal.
The measure of forecastability is based on the Shannon entropy of the spectral
density of the transformed signal.
Author: Georg M. Goerg [aut, cre]
Maintainer: Georg M. Goerg <im@gmge.org>
Diff between ForeCA versions 0.2.7 dated 2020-06-29 and 0.2.8-1 dated 2026-08-23
DESCRIPTION | 17 - MD5 | 53 ++- NAMESPACE | 1 NEWS.md | 38 ++ R/ForeCA-package.R | 10 R/Omega.R | 2 R/common-arguments.R | 3 R/complete_controls.R | 12 R/discrete_entropy.R | 2 R/foreca.R | 4 R/initialize_weightvector.R | 4 R/whiten.R | 4 README.md | 70 +++-- build/vignette.rds |binary inst/CITATION | 10 inst/doc/Introduction.R | 2 inst/doc/Introduction.Rmd | 2 inst/doc/Introduction.html | 548 ++++++++++++++--------------------------- man/ForeCA-package.Rd | 15 - man/Omega.Rd | 2 man/common-arguments.Rd | 1 man/complete-controls.Rd | 11 man/discrete_entropy.Rd | 2 man/foreca.Rd | 4 man/initialize_weightvector.Rd | 2 man/whiten.Rd | 4 tests/testthat/Rplots.pdf |only vignettes/Introduction.Rmd | 2 28 files changed, 376 insertions(+), 449 deletions(-)
Title: Matrix Exponential, Log, 'etc'
Description: Computation of the matrix exponential, logarithm, sqrt,
and related quantities, using traditional and modern methods.
Author: Martin Maechler [aut, cre] ,
Christophe Dutang [aut] ,
Vincent Goulet [aut] ,
Douglas Bates [ctb] ,
David Firth [ctb] ),
Marina Shapira [ctb] ),
Michael Stadelmann [ctb]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between expm versions 1.0-0 dated 2024-08-19 and 1.0-1 dated 2026-08-23
ChangeLog | 14 ++++++++++++++ DESCRIPTION | 17 ++++++++++------- MD5 | 24 ++++++++++++------------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/expm.R | 4 +--- inst/doc/expm.Rnw | 9 +++++---- inst/doc/expm.pdf |binary man/expm.Higham08.Rd | 5 ++--- man/expm.Rd | 4 ++-- tests/exact-ex.R | 6 ++++-- vignettes/expm.Rnw | 9 +++++---- vignettes/expm.bib | 6 +++--- 13 files changed, 58 insertions(+), 40 deletions(-)
Title: Interior Point Conic Optimization Solver
Description: A versatile interior point solver that solves linear programs (LPs), quadratic programs (QPs), second-order cone programs (SOCPs), semidefinite programs (SDPs), and problems with exponential and power cone constraints (<https://clarabel.org/stable/>). For quadratic objectives, unlike interior point solvers based on the standard homogeneous self-dual embedding (HSDE) model, Clarabel handles quadratic objective without requiring any epigraphical reformulation of its objective function. It can therefore be significantly faster than other HSDE-based solvers for problems with quadratic objective functions. Infeasible problems are detected using using a homogeneous embedding technique.
Author: Balasubramanian Narasimhan [aut, cre],
Paul Goulart [aut, cph],
Yuwen Chen [aut],
Hiroaki Yutani [ctb] ,
David Zimmermann-Kollenda [ctb] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between clarabel versions 0.11.2 dated 2026-03-01 and 0.11.3 dated 2026-08-23
DESCRIPTION | 8 MD5 | 60 ++--- NEWS.md | 34 +++ R/000-wrappers.R | 8 R/clarabel.R | 65 +++-- build/vignette.rds |binary inst/doc/clarabel.R | 34 +++ inst/doc/clarabel.Rmd | 155 +++++++++++++ inst/doc/clarabel.html | 335 +++++++++++++++++++++++++----- inst/tinytest/test_api_dimension.R | 5 inst/tinytest/test_basic_eq_constrained.R | 4 inst/tinytest/test_basic_expcone.R | 4 inst/tinytest/test_basic_genpowcone.R | 4 inst/tinytest/test_basic_powcone.R | 4 inst/tinytest/test_basic_psd.R | 5 inst/tinytest/test_basic_socp.R | 3 inst/tinytest/test_basic_unconstrained.R | 4 inst/tinytest/test_control_defaults.R |only inst/tinytest/test_empty_conespec.R | 4 inst/tinytest/test_mixed_conic.R | 5 inst/tinytest/test_presolve.R | 5 inst/tinytest/test_sdp_chordal.R | 4 man/ClarabelSolver.Rd | 5 man/clarabel_control.Rd | 44 ++- man/clarabel_solver.Rd | 13 - man/solver_is_update_allowed.Rd | 8 src/Makevars.win | 2 src/init.c | 6 src/rust/api.h | 1 src/rust/src/lib.rs | 94 ++++++++ tools/rustarch.R |only vignettes/clarabel.Rmd | 155 +++++++++++++ 32 files changed, 883 insertions(+), 195 deletions(-)
Title: Computing P-Values of the One-Sample K-S Test and the Two-Sample
K-S and Kuiper Tests for (Dis)Continuous Null Distribution
Description: Contains functions to compute p-values for the one-sample and two-sample Kolmogorov-Smirnov (KS) tests and the two-sample Kuiper test for any fixed critical level and arbitrary (possibly very large) sample sizes. For the one-sample KS test, this package implements a novel, accurate and efficient method named Exact-KS-FFT, which allows the pre-specified cumulative distribution function under the null hypothesis to be continuous, purely discrete or mixed. In the two-sample case, it is assumed that both samples come from an unspecified (unknown) continuous, purely discrete or mixed distribution, i.e. ties (repeated observations) are allowed, and exact p-values of the KS and the Kuiper tests are computed. Note, the two-sample Kuiper test is often used when data samples are on the line or on the circle (circular data). To cite this package in publication: (for the use of the one-sample KS test) Dimitrina S. Dimitrova, Vladimir K. Kaishev, and Senren Tan. Computing the Kolmogorov-Smirnov Dis [...truncated...]
Author: Dimitrina S. Dimitrova [aut, cre],
Yun Jia [aut],
Vladimir K. Kaishev [aut],
Senren Tan [aut]
Maintainer: Dimitrina S. Dimitrova <D.Dimitrova@city.ac.uk>
Diff between KSgeneral versions 2.0.2 dated 2024-07-29 and 2.1.0 dated 2026-08-22
KSgeneral-2.0.2/KSgeneral/man/ks_c_cdf_Rcpp.Rd |only KSgeneral-2.0.2/KSgeneral/src/cont_ks_dist.cpp |only KSgeneral-2.0.2/KSgeneral/src/crossprob_new.cc |only KSgeneral-2.0.2/KSgeneral/src/crossprob_new.h |only KSgeneral-2.0.2/KSgeneral/src/k2sample_stable1.cpp |only KSgeneral-2.1.0/KSgeneral/DESCRIPTION | 34 KSgeneral-2.1.0/KSgeneral/MD5 | 80 - KSgeneral-2.1.0/KSgeneral/NAMESPACE | 13 KSgeneral-2.1.0/KSgeneral/NEWS.md |only KSgeneral-2.1.0/KSgeneral/R/KS2sample.R | 7 KSgeneral-2.1.0/KSgeneral/R/Kuiper2sample.R | 7 KSgeneral-2.1.0/KSgeneral/R/RcppExports.R | 6 KSgeneral-2.1.0/KSgeneral/R/cont_ks_distribution.R | 177 +-- KSgeneral-2.1.0/KSgeneral/R/cont_ks_test.R | 88 - KSgeneral-2.1.0/KSgeneral/R/deprecated.R |only KSgeneral-2.1.0/KSgeneral/R/disc_ks_distribution.R | 428 ++++---- KSgeneral-2.1.0/KSgeneral/R/disc_ks_test.R | 479 ++++------ KSgeneral-2.1.0/KSgeneral/R/ks_c_cdf.R |only KSgeneral-2.1.0/KSgeneral/R/mixed_ks_distribution.R | 215 ++-- KSgeneral-2.1.0/KSgeneral/R/mixed_ks_test.R | 217 ++-- KSgeneral-2.1.0/KSgeneral/README.md |only KSgeneral-2.1.0/KSgeneral/build/partial.rdb |binary KSgeneral-2.1.0/KSgeneral/man/KS2sample.Rd | 6 KSgeneral-2.1.0/KSgeneral/man/KS2sample_Rcpp.Rd | 2 KSgeneral-2.1.0/KSgeneral/man/KS2sample_c_Rcpp.Rd | 2 KSgeneral-2.1.0/KSgeneral/man/KSgeneral-deprecated.Rd |only KSgeneral-2.1.0/KSgeneral/man/Kuiper2sample.Rd | 6 KSgeneral-2.1.0/KSgeneral/man/Kuiper2sample_Rcpp.Rd | 2 KSgeneral-2.1.0/KSgeneral/man/Kuiper2sample_c_Rcpp.Rd | 2 KSgeneral-2.1.0/KSgeneral/man/Population_Data.Rd | 44 KSgeneral-2.1.0/KSgeneral/man/cont_ks_c_cdf.Rd | 140 +- KSgeneral-2.1.0/KSgeneral/man/cont_ks_distribution.Rd | 138 +- KSgeneral-2.1.0/KSgeneral/man/cont_ks_test.Rd | 136 +- KSgeneral-2.1.0/KSgeneral/man/disc_ks_c_cdf.Rd | 226 ++-- KSgeneral-2.1.0/KSgeneral/man/disc_ks_test.Rd | 210 ++-- KSgeneral-2.1.0/KSgeneral/man/ks_c_cdf.Rd |only KSgeneral-2.1.0/KSgeneral/man/ksgeneral-package.Rd | 16 KSgeneral-2.1.0/KSgeneral/man/mixed_ks_c_cdf.Rd | 244 ++--- KSgeneral-2.1.0/KSgeneral/man/mixed_ks_test.Rd | 244 ++--- KSgeneral-2.1.0/KSgeneral/src/KSgeneral.cpp |only KSgeneral-2.1.0/KSgeneral/src/KSgeneral.h |only KSgeneral-2.1.0/KSgeneral/src/RcppExports.cpp | 34 KSgeneral-2.1.0/KSgeneral/src/aligned_mem.h | 14 KSgeneral-2.1.0/KSgeneral/src/fftw_wrappers.cc | 9 KSgeneral-2.1.0/KSgeneral/src/k1sample.cpp |only KSgeneral-2.1.0/KSgeneral/src/k1sample.h |only KSgeneral-2.1.0/KSgeneral/src/k2sample.cpp |only KSgeneral-2.1.0/KSgeneral/src/two_sided_noncrossing_probability.cc | 118 +- KSgeneral-2.1.0/KSgeneral/src/two_sided_noncrossing_probability.h | 34 49 files changed, 1724 insertions(+), 1654 deletions(-)
Title: Access and Analyze Global GreenSpace Spatial Data
Description: Access and analyze multi-band greenspace seasonality data cubes
(available for 1,028 major global cities), global Normalized Difference
Vegetation Index / land cover data from the European Space Agency
WorldCover 10m Dataset, and Sentinel-2-l2a images. Users can download data
using bounding boxes, city names, and filter by year or seasonal time window.
The package also supports calculating human exposure to greenspace using a
population-weighted greenspace exposure model introduced by
Chen et al. (2022) <doi:10.1038/s41467-022-32258-4> based on Global Human
Settlement Layer population data, and calculating a set of greenspace
morphology metrics at patch and landscape levels.
Author: Xiaohao Yang [aut, cre, cph]
Maintainer: Xiaohao Yang <xiaohaoy111@gmail.com>
Diff between greenSD versions 0.2.0 dated 2026-06-25 and 0.2.2 dated 2026-08-22
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/core.R | 21 +++++++++++---------- inst/doc/get_data.R | 2 +- inst/doc/get_data.Rmd | 4 ++-- inst/doc/get_data.html | 4 ++-- man/get_esa_wc.Rd | 11 ++++++----- vignettes/get_data.Rmd | 4 ++-- 8 files changed, 34 insertions(+), 32 deletions(-)
Title: Fourier ARDL Methods: Quantile, Nonlinear, Multi-Threshold &
Unit Root Tests
Description: Comprehensive implementation of advanced ARDL methodologies for
cointegration analysis with structural breaks and asymmetric effects.
Includes: (1) Fourier Quantile ARDL (FQARDL) - quantile regression with
Fourier approximation for analyzing relationships across the conditional
distribution; (2) Fourier Nonlinear ARDL (FNARDL) - asymmetric cointegration
with partial sum decomposition following Shin, Yu & Greenwood-Nimmo (2014)
<doi:10.1007/978-1-4899-8008-3_9>; (3) Multi-Threshold NARDL (MTNARDL) -
multiple regime asymmetry analysis; (4) Fourier Unit Root Tests - ADF and
KPSS tests with Fourier terms following Enders & Lee (2012)
<doi:10.1016/j.econlet.2012.05.019> and Becker, Enders & Lee (2006)
<doi:10.1111/j.1467-9892.2006.00490.x>. Features automatic lag and frequency
selection, PSS bounds testing following Pesaran, Shin & Smith (2001)
<doi:10.1002/jae.616>, bootstrap cointegration tests, Wald tests for
asymmetry, dynamic multiplier computati [...truncated...]
Author: Muhammad Alkhalaf [aut, cre, cph] ,
Merwan Roudane [ctb]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between fqardl versions 1.0.2 dated 2026-03-17 and 1.0.4 dated 2026-08-22
DESCRIPTION | 14 MD5 | 20 NEWS.md | 124 +++ R/bounds_helpers.R |only R/bounds_test.R | 674 +++++++++-------- R/fnardl.R | 1247 ++++++++++++++++----------------- R/fqardl.R | 632 ++++++++-------- R/mtnardl.R | 1216 ++++++++++++++++---------------- R/qardl.R | 734 +++++++++---------- README.md | 223 +---- tests/testthat/test-bounds.R | 40 - tests/testthat/test-regression-1.0.3.R |only 12 files changed, 2511 insertions(+), 2413 deletions(-)
Title: Recursive Partitioning for Graded Response Models
Description: Provides methods for recursive partitioning based on the
'Graded Response Model' ('GRM'), extending the 'MOB' algorithm from the
'partykit' package. The package allows for fitting
'GRM' trees that partition the population into homogeneous
subgroups based on item response patterns and covariates.
Includes specialized plotting functions for visualizing 'GRM' trees
with different terminal node displays (threshold regions,
parameter profiles, and factor score distributions). The package also implements the Longitudinal GRMTree for detecting response shift in PROMs measured at two time points, embedding a constrained two-factor longitudinal GRM within recursive partitioning, with post-hoc characterization of recalibration and reprioritization.
For more details on the methods, see Samejima (1969) <doi:10.1002/J.2333-8504.1968.TB00153.X>, Komboz et al. (2018) <doi:10.1177/0013164416664394> and Arimoro et al. (2025) <doi:10.1007/s11136-025-04018-6>.
Author: Olayinka I. Arimoro [aut, cre] ,
Tolulope T. Sajobi [aut],
Lisa M. Lix [aut],
Matthew T. James [ctb],
Maria Santana [ctb],
Emmanuel Ugochukwu [ctb]
Maintainer: Olayinka I. Arimoro <olayinka.arimoro@ucalgary.ca>
Diff between grmtree versions 0.2.0 dated 2026-07-02 and 0.2.2 dated 2026-08-22
DESCRIPTION | 12 MD5 | 84 - NAMESPACE | 2 NEWS.md | 42 R/grmforest-control.R | 152 +-- R/grmforest-varimp-final.R | 361 +++---- R/grmforest-varimp-plot.R | 8 R/grmforest.R | 559 +++++++++--- R/grmtree-fscores.R | 3 R/grmtree-threshpar.R | 8 R/grmtree.R | 12 R/longitudinal_grmtree.R | 100 +- R/rs_characterize.R | 960 ++++++++------------- R/rs_characterize_plots.R | 197 ++-- README.md | 7 inst/doc/GRMForest-implementation.R | 12 inst/doc/GRMForest-implementation.Rmd | 28 inst/doc/GRMForest-implementation.html | 126 +- inst/doc/getting-started-with-grmtree-package.R | 138 +-- inst/doc/getting-started-with-grmtree-package.Rmd | 14 inst/doc/getting-started-with-grmtree-package.html | 394 +------- inst/doc/longitudinal-grmtree.Rmd | 3 inst/doc/longitudinal-grmtree.html | 3 man/c.grmforest.Rd |only man/grmforest.Rd | 72 + man/grmforest.control.Rd | 99 +- man/longitudinal_grmtree.Rd | 75 - man/plot.varimp.Rd | 9 man/plot_rs_tree.Rd | 24 man/print.grmforest.Rd | 10 man/print.varimp.Rd |only man/rs_characterize.Rd | 444 ++++----- man/threshpar_grmtree.Rd | 9 man/varimp.Rd | 84 + tests/testthat/test-discrpar.R | 4 tests/testthat/test-generate_node_scores_dataset.R | 3 tests/testthat/test-grmforest.R | 147 +-- tests/testthat/test-grmtree.R | 1 tests/testthat/test-itempar.R | 3 tests/testthat/test-plot.R | 1 tests/testthat/test-varimp.R | 196 +--- vignettes/GRMForest-implementation.Rmd | 28 vignettes/getting-started-with-grmtree-package.Rmd | 14 vignettes/longitudinal-grmtree.Rmd | 3 44 files changed, 2240 insertions(+), 2211 deletions(-)
Title: Optimal Pairing and Matching via Linear Assignment
Description: Solves optimal pairing and matching problems using linear assignment
algorithms. Provides implementations of the Hungarian method (Kuhn 1955)
<doi:10.1002/nav.3800020109>, Jonker-Volgenant shortest path algorithm
(Jonker and Volgenant 1987) <doi:10.1007/BF02278710>, Auction algorithm
(Bertsekas 1988) <doi:10.1007/BF02186476>, cost-scaling
(Goldberg and Kennedy 1995) <doi:10.1007/BF01585996>, scaling algorithms
(Gabow and Tarjan 1989) <doi:10.1137/0218069>, push-relabel (Goldberg and
Tarjan 1988) <doi:10.1145/48014.61051>, and Sinkhorn entropy-regularized
transport (Cuturi 2013) <doi:10.48550/arxiv.1306.0895>. Designed for
matching plots, sites, samples, or any pairwise optimization problem.
Supports rectangular matrices, forbidden assignments, data frame inputs,
batch solving, k-best solutions, and pixel-level image morphing for
visualization. Includes automatic preprocessing with variable health
checks, multiple scaling methods (standardized, [...truncated...]
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between couplr versions 1.5.3 dated 2026-07-25 and 1.6.1 dated 2026-08-22
couplr-1.5.3/couplr/R/trace_stub.R |only couplr-1.5.3/couplr/man/augment.Rd |only couplr-1.5.3/couplr/man/dot-couples_ratio.Rd |only couplr-1.5.3/couplr/src/solvers/solve_full_matching.cpp |only couplr-1.5.3/couplr/src/solvers/solve_full_matching.h |only couplr-1.5.3/couplr/src/solvers/solve_full_matching_rcpp.cpp |only couplr-1.6.1/couplr/DESCRIPTION | 9 couplr-1.6.1/couplr/MD5 | 651 +- couplr-1.6.1/couplr/NAMESPACE | 247 couplr-1.6.1/couplr/NEWS.md | 2193 +++++--- couplr-1.6.1/couplr/R/RcppExports.R | 64 couplr-1.6.1/couplr/R/flow_model.R |only couplr-1.6.1/couplr/R/lap_cardinality.R |only couplr-1.6.1/couplr/R/lap_certify.R |only couplr-1.6.1/couplr/R/lap_dispatch.R |only couplr-1.6.1/couplr/R/lap_implicit.R |only couplr-1.6.1/couplr/R/lap_solve.R | 2521 +++++----- couplr-1.6.1/couplr/R/lap_solve_batch.R | 594 +- couplr-1.6.1/couplr/R/lap_solve_kbest.R | 586 +- couplr-1.6.1/couplr/R/lap_status.R |only couplr-1.6.1/couplr/R/matching_balance_flow.R |only couplr-1.6.1/couplr/R/matching_cardinality.R | 569 +- couplr-1.6.1/couplr/R/matching_cardinality_exact.R |only couplr-1.6.1/couplr/R/matching_cardinality_heuristic.R |only couplr-1.6.1/couplr/R/matching_cem.R | 625 +- couplr-1.6.1/couplr/R/matching_constraints.R | 342 - couplr-1.6.1/couplr/R/matching_core.R | 893 +-- couplr-1.6.1/couplr/R/matching_diagnostics.R | 72 couplr-1.6.1/couplr/R/matching_distance.R | 578 +- couplr-1.6.1/couplr/R/matching_full.R | 901 ++- couplr-1.6.1/couplr/R/matching_interop.R | 479 + couplr-1.6.1/couplr/R/matching_join.R | 47 couplr-1.6.1/couplr/R/matching_lazy.R | 45 couplr-1.6.1/couplr/R/matching_memory.R | 127 couplr-1.6.1/couplr/R/matching_messages.R | 964 +-- couplr-1.6.1/couplr/R/matching_methods.R |only couplr-1.6.1/couplr/R/matching_moments.R |only couplr-1.6.1/couplr/R/matching_output.R | 445 - couplr-1.6.1/couplr/R/matching_parallel.R | 632 +- couplr-1.6.1/couplr/R/matching_path.R |only couplr-1.6.1/couplr/R/matching_sensitivity.R | 644 +- couplr-1.6.1/couplr/R/matching_subclass.R | 516 +- couplr-1.6.1/couplr/R/matching_utils.R | 455 + couplr-1.6.1/couplr/R/morph_tiling.R | 676 +- couplr-1.6.1/couplr/R/morph_utils.R | 822 +-- couplr-1.6.1/couplr/R/trace_csa.R | 44 couplr-1.6.1/couplr/R/trace_csflow.R | 214 couplr-1.6.1/couplr/R/trace_cycle_cancel.R | 14 couplr-1.6.1/couplr/R/trace_helpers_frame.R | 46 couplr-1.6.1/couplr/R/trace_helpers_mcf.R | 154 couplr-1.6.1/couplr/R/trace_helpers_sap.R |only couplr-1.6.1/couplr/R/trace_hungarian.R | 23 couplr-1.6.1/couplr/R/trace_jv.R | 12 couplr-1.6.1/couplr/R/trace_network_simplex.R | 45 couplr-1.6.1/couplr/R/trace_push_relabel.R | 139 couplr-1.6.1/couplr/R/trace_ramshaw_tarjan.R | 40 couplr-1.6.1/couplr/R/trace_ssap_bucket.R | 36 couplr-1.6.1/couplr/R/utils.R | 352 - couplr-1.6.1/couplr/R/zzz.R | 106 couplr-1.6.1/couplr/README.md | 10 couplr-1.6.1/couplr/inst/doc/algorithms.html | 8 couplr-1.6.1/couplr/inst/doc/comparison.Rmd | 11 couplr-1.6.1/couplr/inst/doc/comparison.html | 18 couplr-1.6.1/couplr/inst/doc/getting-started.html | 95 couplr-1.6.1/couplr/inst/doc/matching-workflows.R | 44 couplr-1.6.1/couplr/inst/doc/matching-workflows.Rmd | 62 couplr-1.6.1/couplr/inst/doc/matching-workflows.html | 499 + couplr-1.6.1/couplr/inst/doc/pixel-morphing.html | 4 couplr-1.6.1/couplr/inst/doc/troubleshooting.html | 30 couplr-1.6.1/couplr/man/BIG_COST.Rd | 30 couplr-1.6.1/couplr/man/apply_all_constraints.Rd | 46 couplr-1.6.1/couplr/man/apply_calipers.Rd | 30 couplr-1.6.1/couplr/man/apply_max_distance.Rd | 30 couplr-1.6.1/couplr/man/apply_scaling.Rd | 30 couplr-1.6.1/couplr/man/apply_weights.Rd | 30 couplr-1.6.1/couplr/man/as_assignment_matrix.Rd | 42 couplr-1.6.1/couplr/man/as_matchit.Rd | 130 couplr-1.6.1/couplr/man/assign_blocks_cluster.Rd | 30 couplr-1.6.1/couplr/man/assign_blocks_group.Rd | 30 couplr-1.6.1/couplr/man/assignment.Rd | 317 - couplr-1.6.1/couplr/man/assignment_duals.Rd | 152 couplr-1.6.1/couplr/man/augment.matching_result.Rd | 100 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couplr-1.6.1/couplr/man/compute_distances.Rd | 216 couplr-1.6.1/couplr/man/count_valid_pairs.Rd | 30 couplr-1.6.1/couplr/man/couplr-package.Rd | 86 couplr-1.6.1/couplr/man/couplr_emoji.Rd | 36 couplr-1.6.1/couplr/man/couplr_inform.Rd | 30 couplr-1.6.1/couplr/man/couplr_messages.Rd | 20 couplr-1.6.1/couplr/man/couplr_stop.Rd | 30 couplr-1.6.1/couplr/man/couplr_success.Rd | 30 couplr-1.6.1/couplr/man/couplr_warn.Rd | 30 couplr-1.6.1/couplr/man/design_estimand.Rd |only couplr-1.6.1/couplr/man/detect_blocking.Rd | 30 couplr-1.6.1/couplr/man/diagnose_distance_matrix.Rd | 62 couplr-1.6.1/couplr/man/dot-assignment_implicit.Rd |only couplr-1.6.1/couplr/man/dot-auto_breaks.Rd | 40 couplr-1.6.1/couplr/man/dot-autoplot_hist.Rd | 24 couplr-1.6.1/couplr/man/dot-autoplot_love.Rd | 24 couplr-1.6.1/couplr/man/dot-autoplot_variance.Rd | 24 couplr-1.6.1/couplr/man/dot-balance_flow_audit.Rd |only couplr-1.6.1/couplr/man/dot-balance_flow_encode.Rd |only couplr-1.6.1/couplr/man/dot-balance_flow_problem.Rd |only couplr-1.6.1/couplr/man/dot-balance_flow_read.Rd |only couplr-1.6.1/couplr/man/dot-balance_node_layout.Rd |only couplr-1.6.1/couplr/man/dot-blocks_parallel.Rd | 94 couplr-1.6.1/couplr/man/dot-cardinality_branch_bound.Rd |only couplr-1.6.1/couplr/man/dot-cardinality_flow.Rd |only couplr-1.6.1/couplr/man/dot-cardinality_heuristic_report.Rd |only couplr-1.6.1/couplr/man/dot-cardinality_lagrangian.Rd |only couplr-1.6.1/couplr/man/dot-cardinality_prune.Rd |only couplr-1.6.1/couplr/man/dot-cardinality_report.Rd |only couplr-1.6.1/couplr/man/dot-cardinality_result.Rd |only couplr-1.6.1/couplr/man/dot-cardinality_solve.Rd |only couplr-1.6.1/couplr/man/dot-compute_pair_balance.Rd | 24 couplr-1.6.1/couplr/man/dot-couples_blocked.Rd | 92 couplr-1.6.1/couplr/man/dot-couples_from_distance.Rd | 88 couplr-1.6.1/couplr/man/dot-couples_replace.Rd | 50 couplr-1.6.1/couplr/man/dot-couples_single.Rd | 88 couplr-1.6.1/couplr/man/dot-overall_balance.Rd |only couplr-1.6.1/couplr/man/dot-pair_var_diffs.Rd | 24 couplr-1.6.1/couplr/man/dot-rosenbaum_bounds.Rd | 32 couplr-1.6.1/couplr/man/err_invalid_param.Rd | 30 couplr-1.6.1/couplr/man/err_missing_data.Rd | 30 couplr-1.6.1/couplr/man/err_missing_vars.Rd | 30 couplr-1.6.1/couplr/man/err_no_valid_pairs.Rd | 30 couplr-1.6.1/couplr/man/example_costs.Rd | 138 couplr-1.6.1/couplr/man/example_df.Rd | 142 couplr-1.6.1/couplr/man/explain_dispatch.Rd |only couplr-1.6.1/couplr/man/extract_ids.Rd | 51 couplr-1.6.1/couplr/man/extract_matching_vars.Rd | 30 couplr-1.6.1/couplr/man/filter_blocks.Rd | 44 couplr-1.6.1/couplr/man/full_match.Rd | 257 - couplr-1.6.1/couplr/man/get_block_id_column.Rd | 30 couplr-1.6.1/couplr/man/get_free_ram_mb.Rd | 11 couplr-1.6.1/couplr/man/get_method_used.Rd | 34 couplr-1.6.1/couplr/man/get_total_cost.Rd | 34 couplr-1.6.1/couplr/man/greedy_blocks_parallel.Rd | 118 couplr-1.6.1/couplr/man/group_by.Rd | 24 couplr-1.6.1/couplr/man/has_blocks.Rd | 30 couplr-1.6.1/couplr/man/has_valid_pairs.Rd | 30 couplr-1.6.1/couplr/man/hospital_staff.Rd | 302 - couplr-1.6.1/couplr/man/info_low_match_rate.Rd | 30 couplr-1.6.1/couplr/man/is_distance_object.Rd | 50 couplr-1.6.1/couplr/man/is_lap_solve_batch_result.Rd | 34 couplr-1.6.1/couplr/man/is_lap_solve_kbest_result.Rd | 34 couplr-1.6.1/couplr/man/is_lap_solve_result.Rd | 34 couplr-1.6.1/couplr/man/join_matched.Rd | 254 - couplr-1.6.1/couplr/man/lap_solve.Rd | 164 couplr-1.6.1/couplr/man/lap_solve_batch.Rd | 152 couplr-1.6.1/couplr/man/lap_solve_kbest.Rd | 146 couplr-1.6.1/couplr/man/lap_solve_line_metric.Rd | 158 couplr-1.6.1/couplr/man/lazy_cost_spec_calipers.Rd |only couplr-1.6.1/couplr/man/lazy_cost_spec_mode.Rd |only couplr-1.6.1/couplr/man/long_to_cost_matrix.Rd |only couplr-1.6.1/couplr/man/mark_forbidden_pairs.Rd | 30 couplr-1.6.1/couplr/man/mask_forbidden.Rd |only couplr-1.6.1/couplr/man/match_blocks_parallel.Rd | 118 couplr-1.6.1/couplr/man/match_couples.Rd | 344 - 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couplr-1.6.1/couplr/man/vm_stat_available_mb.Rd |only couplr-1.6.1/couplr/man/vm_stat_page_size.Rd |only couplr-1.6.1/couplr/man/warn_constant_distance.Rd | 30 couplr-1.6.1/couplr/man/warn_constant_var.Rd | 30 couplr-1.6.1/couplr/man/warn_extreme_costs.Rd | 30 couplr-1.6.1/couplr/man/warn_many_forbidden.Rd | 30 couplr-1.6.1/couplr/man/warn_many_zeros.Rd | 30 couplr-1.6.1/couplr/man/warn_parallel_unavailable.Rd | 30 couplr-1.6.1/couplr/man/warn_poor_quality.Rd | 30 couplr-1.6.1/couplr/src/Makevars | 32 couplr-1.6.1/couplr/src/Makevars.win | 32 couplr-1.6.1/couplr/src/RcppExports.cpp | 283 + couplr-1.6.1/couplr/src/core/kbest_partition.cpp |only couplr-1.6.1/couplr/src/core/kbest_partition.h |only couplr-1.6.1/couplr/src/core/lap_certify.h |only couplr-1.6.1/couplr/src/core/lap_certify_rcpp.cpp |only couplr-1.6.1/couplr/src/core/lap_cost_source.h |only couplr-1.6.1/couplr/src/core/lap_cost_view.h | 13 couplr-1.6.1/couplr/src/core/lap_error.h | 18 couplr-1.6.1/couplr/src/core/lap_hall.h |only couplr-1.6.1/couplr/src/core/lap_hall_rcpp.cpp |only couplr-1.6.1/couplr/src/core/lap_internal.h | 20 couplr-1.6.1/couplr/src/core/lap_lazy_types.h | 72 couplr-1.6.1/couplr/src/core/lap_neighbours.h |only couplr-1.6.1/couplr/src/core/lap_rcpp_convert.h |only couplr-1.6.1/couplr/src/core/lap_utils.cpp | 56 couplr-1.6.1/couplr/src/core/lap_utils.h | 62 couplr-1.6.1/couplr/src/core/lap_utils_rcpp.h | 8 couplr-1.6.1/couplr/src/flow |only couplr-1.6.1/couplr/src/gabow_tarjan/solve_gabow_tarjan.cpp | 174 couplr-1.6.1/couplr/src/gabow_tarjan/utils_gabow_tarjan.cpp | 673 +- couplr-1.6.1/couplr/src/gabow_tarjan/utils_gabow_tarjan.h | 69 couplr-1.6.1/couplr/src/interface/probe_cost_matrix.cpp |only couplr-1.6.1/couplr/src/rcpp_interface.cpp | 228 couplr-1.6.1/couplr/src/solvers/jv_core.cpp | 20 couplr-1.6.1/couplr/src/solvers/jv_core.h | 5 couplr-1.6.1/couplr/src/solvers/network_simplex/ns_graph.h | 3 couplr-1.6.1/couplr/src/solvers/network_simplex/ns_init.h | 80 couplr-1.6.1/couplr/src/solvers/network_simplex/ns_pivot.h | 30 couplr-1.6.1/couplr/src/solvers/network_simplex/ns_types.h | 39 couplr-1.6.1/couplr/src/solvers/network_simplex/solve_network_simplex.cpp | 46 couplr-1.6.1/couplr/src/solvers/network_simplex/solve_network_simplex.h | 9 couplr-1.6.1/couplr/src/solvers/network_simplex/solve_network_simplex_rcpp.cpp | 11 couplr-1.6.1/couplr/src/solvers/orlin_ahuja/orlin_solve.cpp | 5 couplr-1.6.1/couplr/src/solvers/solve_auction.cpp | 53 couplr-1.6.1/couplr/src/solvers/solve_bottleneck.cpp | 5 couplr-1.6.1/couplr/src/solvers/solve_bruteforce.cpp | 5 couplr-1.6.1/couplr/src/solvers/solve_csa.cpp | 5 couplr-1.6.1/couplr/src/solvers/solve_csflow.cpp | 176 couplr-1.6.1/couplr/src/solvers/solve_cycle_cancel.cpp | 137 couplr-1.6.1/couplr/src/solvers/solve_hk01.cpp | 5 couplr-1.6.1/couplr/src/solvers/solve_hungarian.cpp | 4 couplr-1.6.1/couplr/src/solvers/solve_jv.cpp | 81 couplr-1.6.1/couplr/src/solvers/solve_jv_duals.cpp | 89 couplr-1.6.1/couplr/src/solvers/solve_jv_duals.h | 11 couplr-1.6.1/couplr/src/solvers/solve_jv_duals_lazy_rcpp.cpp |only couplr-1.6.1/couplr/src/solvers/solve_kbest_lawler.cpp | 84 couplr-1.6.1/couplr/src/solvers/solve_lapmod.cpp | 5 couplr-1.6.1/couplr/src/solvers/solve_munkres.cpp | 4 couplr-1.6.1/couplr/src/solvers/solve_murty.cpp | 102 couplr-1.6.1/couplr/src/solvers/solve_push_relabel.cpp | 195 couplr-1.6.1/couplr/src/solvers/solve_push_relabel.h | 24 couplr-1.6.1/couplr/src/solvers/solve_ssp.cpp | 143 couplr-1.6.1/couplr/tests/testthat/_snaps |only couplr-1.6.1/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleG.R | 1030 +--- couplr-1.6.1/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleH.R | 581 +- couplr-1.6.1/couplr/tests/testthat/helper-cardinality.R |only couplr-1.6.1/couplr/tests/testthat/helper-certify.R |only couplr-1.6.1/couplr/tests/testthat/test-assignment-duals.R | 566 +- couplr-1.6.1/couplr/tests/testthat/test-assignment-ssap-bucket.R | 793 +-- couplr-1.6.1/couplr/tests/testthat/test-assignment-ssp.R | 97 couplr-1.6.1/couplr/tests/testthat/test-autoplot.R | 6 couplr-1.6.1/couplr/tests/testthat/test-cardinality-balance-flow.R |only couplr-1.6.1/couplr/tests/testthat/test-cardinality-exact.R |only couplr-1.6.1/couplr/tests/testthat/test-cardinality-moments.R |only couplr-1.6.1/couplr/tests/testthat/test-cardinality.R | 472 + couplr-1.6.1/couplr/tests/testthat/test-certificate.R |only couplr-1.6.1/couplr/tests/testthat/test-constrained-optimality.R |only couplr-1.6.1/couplr/tests/testthat/test-coverage-90-boost.R | 54 couplr-1.6.1/couplr/tests/testthat/test-coverage-90-final.R | 3 couplr-1.6.1/couplr/tests/testthat/test-coverage-90-target.R | 53 couplr-1.6.1/couplr/tests/testthat/test-coverage-final-push.R | 567 +- couplr-1.6.1/couplr/tests/testthat/test-dispatch-probe.R |only couplr-1.6.1/couplr/tests/testthat/test-flow-design.R |only couplr-1.6.1/couplr/tests/testthat/test-flow-model.R |only couplr-1.6.1/couplr/tests/testthat/test-gabow_tarjan_solver.R | 858 ++- couplr-1.6.1/couplr/tests/testthat/test-implicit.R |only couplr-1.6.1/couplr/tests/testthat/test-kbest-partition.R |only couplr-1.6.1/couplr/tests/testthat/test-lap-solve-extended-coverage.R | 562 +- couplr-1.6.1/couplr/tests/testthat/test-lap-solve-final-coverage.R | 575 +- couplr-1.6.1/couplr/tests/testthat/test-match-path.R |only couplr-1.6.1/couplr/tests/testthat/test-matching-constraints.R | 559 +- couplr-1.6.1/couplr/tests/testthat/test-matching-core-coverage.R | 22 couplr-1.6.1/couplr/tests/testthat/test-matching-core-extended.R | 3 couplr-1.6.1/couplr/tests/testthat/test-matching-id-contract.R |only couplr-1.6.1/couplr/tests/testthat/test-matching-replace.R | 4 couplr-1.6.1/couplr/tests/testthat/test-matching.R | 12 couplr-1.6.1/couplr/tests/testthat/test-memory-mode.R | 43 couplr-1.6.1/couplr/tests/testthat/test-morph-coverage-boost.R | 1369 ++--- couplr-1.6.1/couplr/tests/testthat/test-morph-coverage-final.R | 31 couplr-1.6.1/couplr/tests/testthat/test-morph-final-push.R | 644 +- couplr-1.6.1/couplr/tests/testthat/test-morph-pixel.R | 7 couplr-1.6.1/couplr/tests/testthat/test-morph-tiling-coverage.R | 722 +- couplr-1.6.1/couplr/tests/testthat/test-morph-tiling-extended.R | 277 - couplr-1.6.1/couplr/tests/testthat/test-morph-utils-coverage-2.R | 433 - couplr-1.6.1/couplr/tests/testthat/test-morph-utils-coverage-3.R | 402 - couplr-1.6.1/couplr/tests/testthat/test-morph-utils-coverage-4.R | 651 +- couplr-1.6.1/couplr/tests/testthat/test-morph-utils-coverage.R | 487 - couplr-1.6.1/couplr/tests/testthat/test-morph-utils-extended.R | 399 - couplr-1.6.1/couplr/tests/testthat/test-morph-utils-final.R | 1089 ++-- couplr-1.6.1/couplr/tests/testthat/test-morph-utils-internal.R | 420 - couplr-1.6.1/couplr/tests/testthat/test-morph-utils.R | 567 -- couplr-1.6.1/couplr/tests/testthat/test-pixel-morph.R | 797 +-- couplr-1.6.1/couplr/tests/testthat/test-propensity.R | 197 couplr-1.6.1/couplr/tests/testthat/test-push-relabel.R |only couplr-1.6.1/couplr/tests/testthat/test-source-hygiene.R |only couplr-1.6.1/couplr/tests/testthat/test-statistical-recovery.R | 19 couplr-1.6.1/couplr/tests/testthat/test-summary-enhanced.R | 6 couplr-1.6.1/couplr/tests/testthat/test-trace-parity.R | 4 couplr-1.6.1/couplr/vignettes/comparison.Rmd | 11 couplr-1.6.1/couplr/vignettes/matching-workflows.Rmd | 62 353 files changed, 24840 insertions(+), 22730 deletions(-)
Title: Parse 'YMD' Format Number or String to Date
Description: Convert 'YMD' format number or string to Date efficiently, using Rust's
standard library. It also provides helper functions to handle Date, e.g., quick
finding the beginning or end of the given period, adding months to Date, etc.
Author: Xianying Tan [aut, cre] ,
Hiroaki Yutani [ctb] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Xianying Tan <shrektan@126.com>
Diff between ymd versions 0.1.5 dated 2025-04-15 and 0.1.7 dated 2026-08-22
DESCRIPTION | 18 ++-- LICENSE.note | 130 ++++++++++++++++++------------ MD5 | 48 ++++++----- NEWS.md | 18 ++++ R/extendr-wrappers.R | 7 - R/ymd.R | 2 README.md | 173 ++++++++++++++++++++++------------------ cleanup | 6 - cleanup.win |only inst/AUTHORS | 37 ++++++-- inst/WORDLIST |only man/beop.Rd | 2 man/edate.Rd | 3 man/ymd.Rd | 2 src/Makevars.in | 29 ++++-- src/Makevars.win.in | 29 ++++-- src/entrypoint.c | 2 src/rust/Cargo.lock | 108 +++++++++++++++++------- src/rust/Cargo.toml | 16 ++- src/rust/document.rs |only src/rust/src/dateof.rs | 2 src/rust/src/lib.rs | 18 +--- src/rust/src/period.rs | 4 src/rust/src/rdate.rs | 75 ++++++++++++----- src/rust/vendor.tar.xz |binary tests/testthat/test-date-part.R |only tools/config.R | 18 +++- 27 files changed, 473 insertions(+), 274 deletions(-)
Title: Model-Independent Variable Selection via the Rule-Based Variable
Priority
Description: A new framework of variable selection, which instead of generating artificial covariates such as permutation importance and knockoffs, creates release rules to examine the affect on the response for each covariate where the conditional distribution of the response variable can be arbitrary and unknown.
Author: Min Lu [aut],
Aster K. Shear [aut],
Udaya B. Kogalur [aut, cre],
Hemant Ishwaran [aut]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between varPro versions 3.1.0 dated 2026-04-19 and 3.2.0 dated 2026-08-22
DESCRIPTION | 8 MD5 | 18 - NEWS.md | 19 + R/outpro.R | 105 ++++- R/partialpro.R | 148 +++++++- R/utilities_outpro.R | 81 ++++ R/utilities_partialpro.R | 12 man/outpro.Rd | 260 +++++++++----- man/partialpro.Rd | 710 +++++++++++++++++++++++++--------------- src/shared/stackForestObjects.c | 2 10 files changed, 945 insertions(+), 418 deletions(-)
Title: Social Mixing Matrices for Infectious Disease Modelling
Description: Methods for sampling contact matrices from diary data for
use in infectious disease modelling, as discussed in Mossong et al.
(2008) <doi:10.1371/journal.pmed.0050074>.
Author: Sebastian Funk [aut, cre],
Lander Willem [aut],
Hugo Gruson [aut],
Nicholas Tierney [aut] ,
Maria Bekker-Nielsen Dunbar [ctb],
Carl A. B. Pearson [ctb],
Sam Clifford [ctb],
Christopher Jarvis [ctb],
Alexis Robert [ctb],
Niel Hens [ctb],
Pietro Colett [...truncated...]
Maintainer: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
Diff between socialmixr versions 0.6.0 dated 2026-04-29 and 0.7.0 dated 2026-08-22
socialmixr-0.6.0/socialmixr/R/limits_to_agegroups.R |only socialmixr-0.6.0/socialmixr/R/reduce_agegroups.R |only socialmixr-0.6.0/socialmixr/man/resolve_survey_pop.Rd |only socialmixr-0.6.0/socialmixr/tests/testthat/_snaps/checks.md |only socialmixr-0.7.0/socialmixr/DESCRIPTION | 6 socialmixr-0.7.0/socialmixr/MD5 | 186 +++-- socialmixr-0.7.0/socialmixr/NAMESPACE | 11 socialmixr-0.7.0/socialmixr/NEWS.md | 131 ++++ socialmixr-0.7.0/socialmixr/R/as_contact_survey.R | 2 socialmixr-0.7.0/socialmixr/R/assign-age-groups.R | 21 socialmixr-0.7.0/socialmixr/R/check.R | 63 - socialmixr-0.7.0/socialmixr/R/checkers.R | 9 socialmixr-0.7.0/socialmixr/R/clean.R | 2 socialmixr-0.7.0/socialmixr/R/compute-matrix.R | 60 + socialmixr-0.7.0/socialmixr/R/contact-age-distribution.R | 4 socialmixr-0.7.0/socialmixr/R/contact-matrix-result.R | 132 +++- socialmixr-0.7.0/socialmixr/R/contact-matrix-utils.R | 210 ++++-- socialmixr-0.7.0/socialmixr/R/contact_matrix.R | 114 +-- socialmixr-0.7.0/socialmixr/R/deprecate-args.R | 3 socialmixr-0.7.0/socialmixr/R/deprecated.R | 62 - socialmixr-0.7.0/socialmixr/R/globals.R | 26 socialmixr-0.7.0/socialmixr/R/groupings.R |only socialmixr-0.7.0/socialmixr/R/limits_to_age_groups.R |only socialmixr-0.7.0/socialmixr/R/lists.R | 4 socialmixr-0.7.0/socialmixr/R/load-survey-utils.R | 30 socialmixr-0.7.0/socialmixr/R/matrix_plot.R | 18 socialmixr-0.7.0/socialmixr/R/pop_age.R | 116 --- socialmixr-0.7.0/socialmixr/R/postprocess-matrix.R | 266 +++++--- socialmixr-0.7.0/socialmixr/R/rebin_ages.R |only socialmixr-0.7.0/socialmixr/R/reduce_age_groups.R |only socialmixr-0.7.0/socialmixr/R/subset-contact-survey.R | 4 socialmixr-0.7.0/socialmixr/R/survey-country-population.R | 34 - socialmixr-0.7.0/socialmixr/R/survey.R | 24 socialmixr-0.7.0/socialmixr/R/weigh.R | 302 +++++++-- socialmixr-0.7.0/socialmixr/R/wpp_age.R | 19 socialmixr-0.7.0/socialmixr/README.md | 7 socialmixr-0.7.0/socialmixr/inst/dev/check_all_surveys.r | 33 - socialmixr-0.7.0/socialmixr/inst/dev/dl_all_surveys.r | 10 socialmixr-0.7.0/socialmixr/inst/doc/socialmixr.R | 75 +- socialmixr-0.7.0/socialmixr/inst/doc/socialmixr.Rmd | 92 +- socialmixr-0.7.0/socialmixr/inst/doc/socialmixr.html | 325 +++++----- socialmixr-0.7.0/socialmixr/man/abort_if_missing.Rd |only socialmixr-0.7.0/socialmixr/man/age_groups_to_limits.Rd |only socialmixr-0.7.0/socialmixr/man/agegroups_to_limits.Rd | 16 socialmixr-0.7.0/socialmixr/man/align_ages.Rd |only socialmixr-0.7.0/socialmixr/man/as_contact_survey.Rd | 2 socialmixr-0.7.0/socialmixr/man/assign_age_groups.Rd | 13 socialmixr-0.7.0/socialmixr/man/check.Rd | 2 socialmixr-0.7.0/socialmixr/man/check_grouping_columns.Rd |only socialmixr-0.7.0/socialmixr/man/check_part_cnt_dims_match.Rd |only socialmixr-0.7.0/socialmixr/man/compute_matrix.Rd | 38 + socialmixr-0.7.0/socialmixr/man/contact_matrix.Rd | 29 socialmixr-0.7.0/socialmixr/man/default_age_groupings.Rd |only socialmixr-0.7.0/socialmixr/man/deprecate_arg.Rd | 3 socialmixr-0.7.0/socialmixr/man/download_survey.Rd | 8 socialmixr-0.7.0/socialmixr/man/explicit_grouping.Rd |only socialmixr-0.7.0/socialmixr/man/flat_level_labels.Rd |only socialmixr-0.7.0/socialmixr/man/flatten.Rd |only socialmixr-0.7.0/socialmixr/man/get_citation.Rd | 9 socialmixr-0.7.0/socialmixr/man/get_survey.Rd | 8 socialmixr-0.7.0/socialmixr/man/grouping_predicates.Rd |only socialmixr-0.7.0/socialmixr/man/joint_population_vector.Rd |only socialmixr-0.7.0/socialmixr/man/limits_to_age_groups.Rd |only socialmixr-0.7.0/socialmixr/man/limits_to_agegroups.Rd | 13 socialmixr-0.7.0/socialmixr/man/list_surveys.Rd | 7 socialmixr-0.7.0/socialmixr/man/n_participants_per_age_group.Rd |only socialmixr-0.7.0/socialmixr/man/n_participants_per_group.Rd |only socialmixr-0.7.0/socialmixr/man/new_contact_matrix.Rd | 21 socialmixr-0.7.0/socialmixr/man/normalise_weights_to_counts.Rd |only socialmixr-0.7.0/socialmixr/man/per_capita.Rd | 38 - socialmixr-0.7.0/socialmixr/man/pop_age.Rd | 31 socialmixr-0.7.0/socialmixr/man/rebin_ages.Rd |only socialmixr-0.7.0/socialmixr/man/rebin_ages_numeric.Rd |only socialmixr-0.7.0/socialmixr/man/reduce_age_groups.Rd |only socialmixr-0.7.0/socialmixr/man/reduce_agegroups.Rd | 13 socialmixr-0.7.0/socialmixr/man/resolve_groupings.Rd |only socialmixr-0.7.0/socialmixr/man/resolve_one_grouping.Rd |only socialmixr-0.7.0/socialmixr/man/split_matrix.Rd | 35 - socialmixr-0.7.0/socialmixr/man/stem_grouping.Rd |only socialmixr-0.7.0/socialmixr/man/survey.Rd | 11 socialmixr-0.7.0/socialmixr/man/survey_countries.Rd | 11 socialmixr-0.7.0/socialmixr/man/survey_country_population.Rd | 16 socialmixr-0.7.0/socialmixr/man/symmetrise.Rd | 42 - socialmixr-0.7.0/socialmixr/man/weigh.Rd | 154 +++- socialmixr-0.7.0/socialmixr/man/weighted_matrix_array.Rd |only socialmixr-0.7.0/socialmixr/man/wpp_age.Rd | 4 socialmixr-0.7.0/socialmixr/tests/testthat.R | 7 socialmixr-0.7.0/socialmixr/tests/testthat/_snaps/agegroups.md | 20 socialmixr-0.7.0/socialmixr/tests/testthat/_snaps/as_contact_survey.md | 10 socialmixr-0.7.0/socialmixr/tests/testthat/_snaps/matrix.md | 72 -- socialmixr-0.7.0/socialmixr/tests/testthat/_snaps/survey-country-population.md | 20 socialmixr-0.7.0/socialmixr/tests/testthat/helper-copy-survey.R |only socialmixr-0.7.0/socialmixr/tests/testthat/test-agegroups.r | 185 +++-- socialmixr-0.7.0/socialmixr/tests/testthat/test-as_contact_survey.r | 4 socialmixr-0.7.0/socialmixr/tests/testthat/test-checks.r | 53 - socialmixr-0.7.0/socialmixr/tests/testthat/test-clean.R | 5 socialmixr-0.7.0/socialmixr/tests/testthat/test-compute-matrix.R | 70 ++ socialmixr-0.7.0/socialmixr/tests/testthat/test-contact-matrix-result.R | 5 socialmixr-0.7.0/socialmixr/tests/testthat/test-countries.r | 13 socialmixr-0.7.0/socialmixr/tests/testthat/test-load-survey.R | 109 +++ socialmixr-0.7.0/socialmixr/tests/testthat/test-matrix.r | 118 +-- socialmixr-0.7.0/socialmixr/tests/testthat/test-plot.r | 11 socialmixr-0.7.0/socialmixr/tests/testthat/test-postprocess-matrix.R | 305 ++++++++- socialmixr-0.7.0/socialmixr/tests/testthat/test-survey-country-population.R | 9 socialmixr-0.7.0/socialmixr/tests/testthat/test-surveys.r | 28 socialmixr-0.7.0/socialmixr/tests/testthat/test-weigh.R | 322 ++++++--- socialmixr-0.7.0/socialmixr/vignettes/intro.qmd | 112 ++- socialmixr-0.7.0/socialmixr/vignettes/multidimensional.qmd |only socialmixr-0.7.0/socialmixr/vignettes/socialmixr.Rmd | 92 +- socialmixr-0.7.0/socialmixr/vignettes/socialmixr.bib | 11 110 files changed, 2929 insertions(+), 1577 deletions(-)
Title: A Comprehensive Collection of Neuroscience and Brain-Related
Datasets
Description: Offers a rich and diverse collection of datasets focused on the brain, nervous system, and related disorders.
The package includes clinical, experimental, neuroimaging, behavioral, cognitive, and simulated data on conditions such as
Parkinson's disease, Alzheimer's disease, dementia, epilepsy, schizophrenia, autism spectrum disorder, attention deficit, hyperactivity disorder,
Tourette's syndrome, traumatic brain injury, gliomas, migraines, headaches, sleep disorders, concussions, encephalitis,
subarachnoid hemorrhage, and mental health conditions. Datasets cover structural and functional brain data, cross-sectional and longitudinal
MRI imaging studies, neurotransmission, gene expression, cognitive performance, intelligence metrics, sleep deprivation effects, treatment outcomes,
brain-body relationships across species, neurological injury patterns, and acupuncture interventions. Data sources include peer-reviewed studies,
clinical trials, military health records, sports injury databases [...truncated...]
Author: Renzo Caceres Rossi [aut, cre] ,
Michael Seo [ctb] ,
Christopher Schmid [ctb] ,
Si Gao [ctb] ,
Peter Kochunov [ctb, cph] ,
Kathryn Hatch [ctb] .),
Yizhou Ma [ctb] .),
Fatima Talib [ctb] .),
Kevin M. Middleton [ctb] ,
Randall Pruim [ctb] ,
Max Kuhn [c [...truncated...]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between NeuroDataSets versions 0.3.0 dated 2025-11-23 and 0.3.1 dated 2026-08-22
DESCRIPTION | 903 +++++++++++++++++++++- MD5 | 134 +-- NEWS.md | 12 R/data-documentation.R | 4 R/neurodatasets-package.R | 4 R/view_datasets_NeuroDataSets.R | 4 README.md | 8 build/vignette.rds |binary inst/CITATION | 4 inst/doc/introduction_to_neurodatasets.html | 6 inst/licenses/LICENSE | 4 inst/licenses/LICENSE.md | 29 inst/licenses/LICENSES_DETAILS.md | 58 - tests/testthat/test-ADHD_df.R | 4 tests/testthat/test-AD_biomarkers_tbl_df.R | 4 tests/testthat/test-ASD_risks_tbl_df.R | 4 tests/testthat/test-DA_schizophrenia_tbl_df.R | 4 tests/testthat/test-OASIS_cross_tbl_df.R | 4 tests/testthat/test-OASIS_long_tbl_df.R | 4 tests/testthat/test-SAHemorrhage_df.R | 4 tests/testthat/test-TBI_age_tbl_df.R | 4 tests/testthat/test-TBI_military_tbl_df.R | 4 tests/testthat/test-TBI_steroids_df.R | 4 tests/testthat/test-WMpatterns_tbl_df.R | 4 tests/testthat/test-aba_phenotype_data_df.R | 4 tests/testthat/test-ability_intelligence_list.R | 4 tests/testthat/test-acupuncture_df.R | 4 tests/testthat/test-adolescent_mental_health_df.R | 4 tests/testthat/test-alzheimer_smoking_df.R | 4 tests/testthat/test-bilingual_brains_df.R | 4 tests/testthat/test-blood_brain_barrier_df.R | 4 tests/testthat/test-brain_litter_mammals_df.R | 4 tests/testthat/test-brain_size_iq_df.R | 4 tests/testthat/test-brain_string_players_df.R | 4 tests/testthat/test-brainexpression_df.R | 4 tests/testthat/test-brains_cognitive_matrix.R | 4 tests/testthat/test-brainvolume_df.R | 4 tests/testthat/test-cerebellar_age_df.R | 4 tests/testthat/test-chimpbrains_df.R | 4 tests/testthat/test-cocaine_dopamine_df.R | 4 tests/testthat/test-dementia_df.R | 4 tests/testthat/test-encephalitis_df.R | 4 tests/testthat/test-epilepsy_RCT_tbl_df.R | 4 tests/testthat/test-epilepsy_drug_qol_df.R | 4 tests/testthat/test-epilepsy_drug_trial_df.R | 4 tests/testthat/test-gm_expected_patterns_tbl_df.R | 4 tests/testthat/test-hippocampus_lesions_df.R | 4 tests/testthat/test-iq_country_tbl_df.R | 4 tests/testthat/test-mammals_brain_body_df.R | 4 tests/testthat/test-markers_brain_df.R | 4 tests/testthat/test-markers_human_brain_df.R | 4 tests/testthat/test-markers_mouse_brain_df.R | 4 tests/testthat/test-migraine_treatment_df.R | 4 tests/testthat/test-migraines_df.R | 4 tests/testthat/test-migrane_dose_df.R | 4 tests/testthat/test-neanderthal_brains_df.R | 4 tests/testthat/test-neuro_pointprocess_matrix.R | 4 tests/testthat/test-neurodeg_dose_df.R | 4 tests/testthat/test-nfl_concussions_tbl_df.R | 4 tests/testthat/test-parkinsons_dopamine_list.R | 4 tests/testthat/test-pediatric_glioma_tbl_df.R | 4 tests/testthat/test-psych_neurocog_df.R | 4 tests/testthat/test-sleep_deprivation_tbl_df.R | 4 tests/testthat/test-sleep_disorder_df.R | 4 tests/testthat/test-sleep_performance_df.R | 4 tests/testthat/test-subcortical_patterns_tbl_df.R | 4 tests/testthat/test-tourette_ADHD_df.R | 4 tests/testthat/test-view_datasets_NeuroDataSets.R | 4 68 files changed, 1161 insertions(+), 229 deletions(-)
Title: Differentiating Through Cone Programs
Description: A port of the 'python' 'diffcp' package. Computes the
derivative of the optimal solution map of a convex cone program,
treating the program as an implicit function of its data
(constraint matrix, offset, objective coefficients, and optionally
a quadratic), mirroring Agrawal et al. (2019)
<doi:10.48550/arXiv.1904.09043>.
Author: Balasubramanian Narasimhan [aut, cre],
Akshay Agrawal [aut],
Shane Barratt [aut],
Stephen Boyd [aut],
Enzo Busseti [aut],
Walaa Moursi [aut]
Maintainer: Balasubramanian Narasimhan <naras@stanford.edu>
Diff between diffcp versions 0.1.1 dated 2026-05-27 and 0.1.2 dated 2026-08-22
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NEWS.md | 8 ++++++++ R/cone_program.R | 27 ++++++++++++++++++++++++++- R/derivative.R | 14 ++++++++++++-- build/vignette.rds |binary tests/testthat/test-explicit-zeros.R |only 7 files changed, 55 insertions(+), 11 deletions(-)
Title: Bayesian Latent Variable Analysis
Description: Fit a variety of Bayesian latent variable models, including confirmatory
factor analysis, structural equation models, and latent growth curve models. References: Merkle & Rosseel (2018) <doi:10.18637/jss.v085.i04>; Merkle et al. (2021) <doi:10.18637/jss.v100.i06>.
Author: Edgar Merkle [aut, cre] ,
Yves Rosseel [aut],
Ben Goodrich [aut],
Mauricio Garnier-Villarreal [ctb] ,
Terrence D. Jorgensen [ctb] ,
Huub Hoofs [ctb] ,
Rens van de Schoot [ctb] ,
Andrew Johnson [ctb] ,
Matthew Emery [ctb] ,
Michael S. Truong [ctb] )
Maintainer: Edgar Merkle <merklee@missouri.edu>
Diff between blavaan versions 0.5-10 dated 2026-01-20 and 0.6-1 dated 2026-08-22
blavaan-0.5-10/blavaan/inst/testdata |only blavaan-0.6-1/blavaan/DESCRIPTION | 21 blavaan-0.6-1/blavaan/MD5 | 111 blavaan-0.6-1/blavaan/NAMESPACE | 13 blavaan-0.6-1/blavaan/NEWS.md | 38 blavaan-0.6-1/blavaan/R/00class.R | 8 blavaan-0.6-1/blavaan/R/blav_adapt_quad.R | 10 blavaan-0.6-1/blavaan/R/blav_compare.R | 48 blavaan-0.6-1/blavaan/R/blav_cond_utils.R | 244 - blavaan-0.6-1/blavaan/R/blav_fit.R | 136 blavaan-0.6-1/blavaan/R/blav_fit_measures.R | 493 +- blavaan-0.6-1/blavaan/R/blav_limited_info.R |only blavaan-0.6-1/blavaan/R/blav_model_loglik.R | 405 + blavaan-0.6-1/blavaan/R/blav_object_inspect.R | 607 +- blavaan-0.6-1/blavaan/R/blav_object_methods.R | 303 - blavaan-0.6-1/blavaan/R/blav_predict.R | 97 blavaan-0.6-1/blavaan/R/blav_test.R | 93 blavaan-0.6-1/blavaan/R/blav_tidiers.R |only blavaan-0.6-1/blavaan/R/blav_twolevel_ppp.R |only blavaan-0.6-1/blavaan/R/blav_utils.R | 632 +- blavaan-0.6-1/blavaan/R/blavaan.R | 2321 +++++----- blavaan-0.6-1/blavaan/R/ctr_bayes_fit.R | 24 blavaan-0.6-1/blavaan/R/ctr_ppmc.R | 32 blavaan-0.6-1/blavaan/R/dpriors.R | 26 blavaan-0.6-1/blavaan/R/jags2r.R | 378 - blavaan-0.6-1/blavaan/R/lav_export_mcmc.R | 202 blavaan-0.6-1/blavaan/R/lav_export_stanclassic.R | 352 - blavaan-0.6-1/blavaan/R/lav_export_stancond.R | 334 - blavaan-0.6-1/blavaan/R/lav_export_stanmarg.R | 413 + blavaan-0.6-1/blavaan/R/lvgqs.R | 206 blavaan-0.6-1/blavaan/R/margloglik.R | 44 blavaan-0.6-1/blavaan/R/postpred.R | 90 blavaan-0.6-1/blavaan/R/ppp.R |only blavaan-0.6-1/blavaan/R/set_inits.R | 78 blavaan-0.6-1/blavaan/R/set_partable.R | 306 - blavaan-0.6-1/blavaan/R/set_priors.R | 520 +- blavaan-0.6-1/blavaan/R/set_stancovs.R | 22 blavaan-0.6-1/blavaan/R/set_stanpars.R | 422 - blavaan-0.6-1/blavaan/R/stanmarg_data.R | 110 blavaan-0.6-1/blavaan/R/zzz.R | 11 blavaan-0.6-1/blavaan/README.md | 2 blavaan-0.6-1/blavaan/inst/stan/stanmarg.stan | 768 ++- blavaan-0.6-1/blavaan/inst/tinytest/helper_convergence.R |only blavaan-0.6-1/blavaan/inst/tinytest/test_bcontrol_passthrough.R |only blavaan-0.6-1/blavaan/inst/tinytest/test_cmdstan_wcp.R |only blavaan-0.6-1/blavaan/inst/tinytest/test_limited_info_ppp.R |only blavaan-0.6-1/blavaan/inst/tinytest/test_ord2.R |only blavaan-0.6-1/blavaan/inst/tinytest/test_stan2.R |only blavaan-0.6-1/blavaan/inst/tinytest/test_stan_multilevel2.R |only blavaan-0.6-1/blavaan/inst/tinytest/test_stan_multilevel_missing.R |only blavaan-0.6-1/blavaan/inst/tinytest/test_stan_multilevel_missing_lvs.R |only blavaan-0.6-1/blavaan/inst/tinytest/test_stan_reduce_sum.R |only blavaan-0.6-1/blavaan/inst/tinytest/test_twolevel_ppp.R |only blavaan-0.6-1/blavaan/inst/tinytest/tests.blavaan-tidiers.R |only blavaan-0.6-1/blavaan/inst/tinytest/tests.blavaan.R | 6 blavaan-0.6-1/blavaan/inst/tinytest/tests.blavaanobject-methods.R | 313 - blavaan-0.6-1/blavaan/man/bcfa.Rd | 23 blavaan-0.6-1/blavaan/man/bgrowth.Rd | 23 blavaan-0.6-1/blavaan/man/blavFitIndices.Rd | 2 blavaan-0.6-1/blavaan/man/blavInspect.Rd | 33 blavaan-0.6-1/blavaan/man/blavaan-class.Rd | 13 blavaan-0.6-1/blavaan/man/blavaan.Rd | 23 blavaan-0.6-1/blavaan/man/bsem.Rd | 23 blavaan-0.6-1/blavaan/man/glance.blavaan.Rd |only blavaan-0.6-1/blavaan/man/ppp.Rd |only blavaan-0.6-1/blavaan/man/reexports.Rd |only blavaan-0.6-1/blavaan/man/tidy.blavaan.Rd |only 67 files changed, 5920 insertions(+), 4459 deletions(-)
Title: What Works Clearinghouse Standards for Education Impact
Evaluations
Description: Applies the group-design determinations of the What Works
Clearinghouse (WWC) to education impact studies. Computes WWC effect sizes
(Hedges' g with the small-sample correction, and the Cox index) and
classifies baseline equivalence; classifies overall and differential
attrition against the WWC attrition boundary; returns the group-design
study rating; and reports the robustness of the baseline-equivalence
verdict as a multiverse over the computation choices an analyst could
defensibly make differently. Provides report-ready tables and Love plots.
Author: Yuxia Liang [aut, cre]
Maintainer: Yuxia Liang <zl1212@uw.edu>
Diff between baselinr versions 0.5.0 dated 2026-06-30 and 0.6.0 dated 2026-08-22
DESCRIPTION | 23 ++++++----- MD5 | 36 ++++++++++++------ NAMESPACE | 5 ++ NEWS.md | 32 ++++++++++++++++ R/attrition_boundary.R |only R/baselinr.R | 16 ++++++-- R/cluster_correction.R |only R/robustness.R |only R/wwc_rating.R |only README.md | 60 +++++++++++++++++++++---------- inst/CITATION |only inst/doc/impact-evaluation-workflow.Rmd | 12 +++--- inst/doc/impact-evaluation-workflow.html | 20 +++++----- man/attrition_boundary.Rd |only man/baselinr-package.Rd | 2 - man/cluster_correction.Rd |only man/cox_index.Rd | 3 + man/hedges_g.Rd | 3 + man/wwc_rating.Rd |only man/wwc_robustness.Rd |only tests/testthat/test-attrition-boundary.R |only tests/testthat/test-cluster-correction.R |only tests/testthat/test-edge-cases.R |only tests/testthat/test-robustness.R |only tests/testthat/test-wwc-rating.R |only vignettes/impact-evaluation-workflow.Rmd | 12 +++--- 26 files changed, 155 insertions(+), 69 deletions(-)
Title: Static Detection and Citation of R Package and Function Usage
Description: Scans R source files for package and function use, then
builds citations from configurable package universes. Supports .R,
.Rmd, and .qmd files, resolves unqualified calls by attachment order
and re-export origin, and leaves each package collection to define its
own citations. See 'stanflow' <https://github.com/VisruthSK/stanflow>
for an example usage.
Author: Visruth Srimath Kandali [aut, cre, cph]
Maintainer: Visruth Srimath Kandali <public@visruth.com>
Diff between ascribe versions 0.1.1 dated 2026-08-08 and 0.2.0 dated 2026-08-22
DESCRIPTION | 12 MD5 | 46 +- NAMESPACE | 1 NEWS.md | 21 R/cite_usage.R | 32 - R/collect.R | 113 ++-- R/scan_usage.R | 723 +++++++++++++++++-------------- R/universe.R | 32 + README.md | 2 inst/doc/build-a-citation-scanner.R | 9 inst/doc/build-a-citation-scanner.html | 30 - inst/doc/build-a-citation-scanner.qmd | 11 man/build_origin_map.Rd | 2 man/build_universe_data.Rd | 4 man/cite_usage.Rd | 18 man/collect_r6_methods.Rd | 9 man/generate_universe_sysdata.Rd | 2 man/scan_usage.Rd | 33 - tests/testthat/_snaps |only tests/testthat/setup.R |only tests/testthat/test-cite_usage.R | 228 ++++++++-- tests/testthat/test-collect.R | 163 +++++++ tests/testthat/test-scan_usage.R | 746 +++++++++++++++++++++++++-------- tests/testthat/test-universe.R | 14 vignettes/build-a-citation-scanner.qmd | 11 25 files changed, 1542 insertions(+), 720 deletions(-)
Title: Quickly Draw Various Combinations of Circular Objects
Description: Contains the adaptation of bubblebath from 'MATLAB' (Danz, 2020: <https://www.mathworks.com/matlabcentral/fileexchange/70348>) and the tools to transform a
dataframe of radii and points to plot-able paths.
Author: Ryan ODea [aut, cre]
Maintainer: Ryan ODea <odea.ryan@outlook.com>
Diff between circles versions 0.1.0 dated 2025-05-02 and 0.1.2 dated 2026-08-22
DESCRIPTION | 16 ++++++++-------- MD5 | 2 +- 2 files changed, 9 insertions(+), 9 deletions(-)
Title: Nonparametric Analysis of Longitudinal Data in Factorial
Experiments
Description: Provides nonparametric procedures for the analysis of longitudinal data in factorial experiments. The package implements hypothesis tests on marginal distribution functions and unweighted relative marginal effects. It supports arbitrary crossed factorial designs with longitudinal or repeated-measures factors, missing observations, dependent replicates, rank- and pseudo-rank-based inference, Wald-type and ANOVA-type statistics, multiple contrast tests, and simultaneous confidence intervals.
Author: Frank Konietschke [aut, cre],
Kimihiro Noguchi [ctb] ,
Mahbub Latif [ctb] ,
Karthinathan Thangavelu [ctb] ,
Yulia R. Gel [ctb] ,
Edgar Brunner [ctb]
Maintainer: Frank Konietschke <frank.konietschke@charite.de>
Diff between nparLD versions 2.2 dated 2022-08-06 and 2.3.0 dated 2026-08-22
nparLD-2.2/nparLD/R/f1.ld.f1.R |only nparLD-2.2/nparLD/R/f1.ld.f2.R |only nparLD-2.2/nparLD/R/f2.ld.f1.R |only nparLD-2.2/nparLD/R/ld.ci.R |only nparLD-2.2/nparLD/R/ld.f1.R |only nparLD-2.2/nparLD/R/ld.f2.R |only nparLD-2.2/nparLD/R/plot.nparLD.R |only nparLD-2.2/nparLD/R/print.nparLD.R |only nparLD-2.2/nparLD/R/summary.nparLD.R |only nparLD-2.2/nparLD/man/amylase.rd |only nparLD-2.2/nparLD/man/dental.rd |only nparLD-2.2/nparLD/man/edema.rd |only nparLD-2.2/nparLD/man/f1.ld.f1.rd |only nparLD-2.2/nparLD/man/f1.ld.f2.rd |only nparLD-2.2/nparLD/man/f2.ld.f1.rd |only nparLD-2.2/nparLD/man/ld.ci.rd |only nparLD-2.2/nparLD/man/ld.f1.rd |only nparLD-2.2/nparLD/man/ld.f2.rd |only nparLD-2.2/nparLD/man/nparLD.rd |only nparLD-2.2/nparLD/man/panic.rd |only nparLD-2.2/nparLD/man/panic2.rd |only nparLD-2.2/nparLD/man/plasma.rd |only nparLD-2.2/nparLD/man/plot.nparLD.rd |only nparLD-2.2/nparLD/man/print.nparLD.rd |only nparLD-2.2/nparLD/man/rat.rd |only nparLD-2.2/nparLD/man/respiration.rd |only nparLD-2.2/nparLD/man/shoulder.rd |only nparLD-2.2/nparLD/man/summary.nparLD.rd |only nparLD-2.2/nparLD/man/tree.rd |only nparLD-2.3.0/nparLD/DESCRIPTION | 66 - nparLD-2.3.0/nparLD/MD5 | 98 + nparLD-2.3.0/nparLD/NAMESPACE | 44 nparLD-2.3.0/nparLD/NEWS.md |only nparLD-2.3.0/nparLD/R/Design.R |only nparLD-2.3.0/nparLD/R/PairedData.R |only nparLD-2.3.0/nparLD/R/Statistics.R |only nparLD-2.3.0/nparLD/R/Utility.R |only nparLD-2.3.0/nparLD/R/data.R |only nparLD-2.3.0/nparLD/R/nparLD-package.R |only nparLD-2.3.0/nparLD/R/nparLD.R | 904 ++++++++++++----- nparLD-2.3.0/nparLD/README.md |only nparLD-2.3.0/nparLD/build |only nparLD-2.3.0/nparLD/data/amylase.rda |binary nparLD-2.3.0/nparLD/data/brdu.rda |only nparLD-2.3.0/nparLD/data/dental.rda |binary nparLD-2.3.0/nparLD/data/edema.rda |binary nparLD-2.3.0/nparLD/data/panic.rda |binary nparLD-2.3.0/nparLD/data/panic2.rda |binary nparLD-2.3.0/nparLD/data/plasma.rda |binary nparLD-2.3.0/nparLD/data/rat.rda |binary nparLD-2.3.0/nparLD/data/respiration.rda |binary nparLD-2.3.0/nparLD/data/shoulder.rda |binary nparLD-2.3.0/nparLD/data/tree.rda |binary nparLD-2.3.0/nparLD/inst/CITATION | 37 nparLD-2.3.0/nparLD/inst/WORDLIST |only nparLD-2.3.0/nparLD/inst/doc |only nparLD-2.3.0/nparLD/man/amylase.Rd |only nparLD-2.3.0/nparLD/man/brdu.Rd |only nparLD-2.3.0/nparLD/man/dental.Rd |only nparLD-2.3.0/nparLD/man/edema.Rd |only nparLD-2.3.0/nparLD/man/nparLD-package.Rd |only nparLD-2.3.0/nparLD/man/nparLD.Rd |only nparLD-2.3.0/nparLD/man/panic.Rd |only nparLD-2.3.0/nparLD/man/panic2.Rd |only nparLD-2.3.0/nparLD/man/plasma.Rd |only nparLD-2.3.0/nparLD/man/plot.nparld_fit.Rd |only nparLD-2.3.0/nparLD/man/plot.nparld_mctp.Rd |only nparLD-2.3.0/nparLD/man/print.nparld_covarianceinfo.Rd |only nparLD-2.3.0/nparLD/man/print.nparld_factorinfo.Rd |only nparLD-2.3.0/nparLD/man/print.nparld_fit.Rd |only nparLD-2.3.0/nparLD/man/print.nparld_mctp.Rd |only nparLD-2.3.0/nparLD/man/print.summary.nparld_fit.Rd |only nparLD-2.3.0/nparLD/man/rat.Rd |only nparLD-2.3.0/nparLD/man/respiration.Rd |only nparLD-2.3.0/nparLD/man/shoulder.Rd |only nparLD-2.3.0/nparLD/man/summary.nparld_fit.Rd |only nparLD-2.3.0/nparLD/man/tree.Rd |only nparLD-2.3.0/nparLD/tests |only nparLD-2.3.0/nparLD/vignettes |only 79 files changed, 795 insertions(+), 354 deletions(-)
Title: A Financial Calculator
Description: A financial calculator that provides very fast implementations
of common financial indicators using 'Rust' code. It includes functions for
bond-related indicators, such as yield to maturity ('YTM'), modified duration,
and Macaulay duration, as well as functions for calculating time-weighted
and money-weighted rates of return (using 'Modified Dietz' method) for multiple portfolios,
given their market values and profit and loss ('PnL') data. 'fcl' is designed
to be efficient and accurate for financial analysis and computation. The methods
used in this package are based on the following references:
<https://en.wikipedia.org/wiki/Modified_Dietz_method>,
<https://en.wikipedia.org/wiki/Time-weighted_return>.
Author: Xianying Tan [aut, cre] ,
Raymon Mina [ctb] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Xianying Tan <shrektan@126.com>
Diff between fcl versions 0.1.4 dated 2025-04-15 and 0.1.5 dated 2026-08-22
fcl-0.1.4/fcl/tools/msrv.R |only fcl-0.1.5/fcl/DESCRIPTION | 14 - fcl-0.1.5/fcl/LICENSE.note | 112 +++++++++--- fcl-0.1.5/fcl/MD5 | 54 +++--- fcl-0.1.5/fcl/NEWS.md | 12 + fcl-0.1.5/fcl/R/fixed-bond.R | 12 - fcl-0.1.5/fcl/R/rtn.R | 4 fcl-0.1.5/fcl/README.md | 2 fcl-0.1.5/fcl/configure | 3 fcl-0.1.5/fcl/configure.win | 3 fcl-0.1.5/fcl/inst/AUTHORS | 110 +++++++----- fcl-0.1.5/fcl/inst/WORDLIST |only fcl-0.1.5/fcl/man/fixed_bond.Rd | 12 - fcl-0.1.5/fcl/man/make_rtn.Rd | 4 fcl-0.1.5/fcl/src/Makevars.in | 19 -- fcl-0.1.5/fcl/src/Makevars.win.in | 10 - fcl-0.1.5/fcl/src/rust/Cargo.lock | 270 ++++++++++++++++++------------ fcl-0.1.5/fcl/src/rust/Cargo.toml | 8 fcl-0.1.5/fcl/src/rust/src/assert.rs | 6 fcl-0.1.5/fcl/src/rust/src/bond.rs | 63 ++----- fcl-0.1.5/fcl/src/rust/src/check_len.rs | 16 - fcl-0.1.5/fcl/src/rust/src/date_handle.rs | 6 fcl-0.1.5/fcl/src/rust/src/lib.rs | 38 +--- fcl-0.1.5/fcl/src/rust/src/rdate.rs | 19 -- fcl-0.1.5/fcl/src/rust/src/rtn.rs | 30 --- fcl-0.1.5/fcl/src/rust/src/xirr.rs | 8 fcl-0.1.5/fcl/src/rust/vendor.tar.xz |binary fcl-0.1.5/fcl/tools/config.R | 9 - fcl-0.1.5/fcl/tools/configure.R | 59 ++++-- 29 files changed, 514 insertions(+), 389 deletions(-)
Title: Declarative EQUATOR-Style Flow Diagrams for Clinical Studies
Description: Build EQUATOR-style flowcharts for clinical studies by sequentially
defining inclusion and exclusion criteria, study arms, and endpoints. The
pipe-friendly API supports CONSORT (randomized trials), STROBE
(observational cohorts), STARD (diagnostic accuracy), PRISMA (systematic
reviews), and MOOSE (observational meta-analysis) diagram layouts, as well
as multi-source convergence, split-and-recombine, factorial, and hybrid
topologies. Diagrams are rendered via 'grid' graphics in both data-driven
(automatic counting) and manual-count modes, with optional
'DiagrammeR'/'Graphviz' output.
Author: Paul Hsin-ti McClelland [aut, cre, cph]
Maintainer: Paul Hsin-ti McClelland <PaulHMcClelland@protonmail.com>
Diff between selecta versions 0.6.0 dated 2026-06-24 and 0.6.1 dated 2026-08-22
DESCRIPTION | 8 - MD5 | 36 ++-- NEWS.md | 10 + R/compute.R | 2 R/core.R | 4 R/dot.R | 35 ---- R/globals.R | 18 ++ R/grid.R | 2 R/output.R | 246 ++++++++++++++++++++-------------- README.md | 11 + build/vignette.rds |binary inst/doc/advanced_workflows.html | 4 inst/doc/enrollment_diagrams.html | 4 inst/doc/graphviz_export.html | 16 +- man/convert_units.Rd |only man/export_dot.Rd | 7 man/flowchart.Rd | 8 - man/flowsave.Rd | 42 ++++- man/recdims.Rd | 128 ++++++++++------- tests/testthat/test-layout-defaults.R |only 20 files changed, 341 insertions(+), 240 deletions(-)
Title: Analyzing Revisions in Real-Time Time Series Vintages
Description: Analyzes revisions in real-time time series vintages. The
package converts between wide revision triangles and tidy long
vintages, extracts selected releases, computes revision series,
visualizes vintage paths, and summarizes revision properties such as
bias, dispersion, autocorrelation, and news-noise diagnostics. It
also identifies efficient releases and estimates state-space models
for revision nowcasting. Methods are based on Howrey (1978)
<doi:10.2307/1924972>, Jacobs and Van Norden (2011)
<doi:10.1016/j.jeconom.2010.04.010>, and Kishor and Koenig (2012)
<doi:10.1198/jbes.2010.08169>.
Author: Marc Burri [aut, cre, cph] ,
Philipp Wegmueller [aut, cph]
Maintainer: Marc Burri <marc.burri91@gmail.com>
Diff between reviser versions 0.1.1 dated 2026-03-31 and 0.2.0 dated 2026-08-22
DESCRIPTION | 20 +- MD5 | 101 +++++++----- NAMESPACE | 25 +++ NEWS.md | 36 ++++ R/jvn.R | 127 +++++++++++---- R/kk.R | 79 +++++++-- R/model-methods.R |only R/reviser-package.R | 1 R/revisions.R | 2 R/utils.R | 260 +++++++++++++++++++++++++++++++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/efficient-release.html | 148 +++++++++--------- inst/doc/literature-review.html | 18 +- inst/doc/nowcasting-revisions-jvn.R | 34 ++-- inst/doc/nowcasting-revisions-jvn.html | 60 +++---- inst/doc/nowcasting-revisions-kk.R | 26 +-- inst/doc/nowcasting-revisions-kk.html | 170 ++++++++++----------- inst/doc/reviser.Rmd | 2 inst/doc/reviser.html | 262 ++++++++++++++++----------------- inst/doc/revision-analysis.R | 40 ++--- inst/doc/revision-analysis.html | 9 - inst/doc/understanding-revisions.html | 37 ++-- man/coef.jvn_model.Rd |only man/coef.kk_model.Rd |only man/fitted.jvn_model.Rd |only man/fitted.kk_model.Rd |only man/get_nth_release.Rd | 2 man/jvn_nowcast.Rd | 17 ++ man/kk_nowcast.Rd | 17 ++ man/logLik.jvn_model.Rd |only man/logLik.kk_model.Rd |only man/nobs.jvn_model.Rd |only man/nobs.kk_model.Rd |only man/plot.jvn_model.Rd | 17 ++ man/plot.kk_model.Rd | 17 ++ man/predict.jvn_model.Rd |only man/predict.kk_model.Rd |only man/print.jvn_model.Rd | 17 ++ man/print.kk_model.Rd | 17 ++ man/print.tbl_pubdate.Rd | 1 man/print.tbl_release.Rd | 1 man/residuals.jvn_model.Rd |only man/residuals.kk_model.Rd |only man/states.Rd |only man/summary.jvn_model.Rd | 17 ++ man/summary.kk_model.Rd | 17 ++ man/summary.tbl_pubdate.Rd | 5 man/summary.tbl_release.Rd | 1 man/tbl_sum.tbl_pubdate.Rd | 1 man/tbl_sum.tbl_release.Rd | 1 man/validate_vintages.Rd |only man/vcov.jvn_model.Rd |only man/vcov.kk_model.Rd |only man/vintages_long.Rd | 1 man/vintages_wide.Rd | 1 tests/testthat/test-jvn.R | 108 +++++++++++++ tests/testthat/test-kk.R | 149 ++++++++++++++++++ tests/testthat/test-utils.R | 187 +++++++++++++++++++++++ vignettes/reviser.Rmd | 2 60 files changed, 1515 insertions(+), 538 deletions(-)
Title: Grab Longitudinal Employer-Household Dynamics (LEHD) Flat Files
Description: Designed to query Longitudinal Employer-Household Dynamics
(LEHD) workplace/residential association and origin-destination flat
files and optionally aggregate Census block-level data to block group,
tract, county, or state. Also provides analytical functions for commute
flow statistics, longitudinal change, and earnings tier distributions.
Data comes from the LODES FTP server
<https://lehd.ces.census.gov/data/lodes/LODES8/>.
Author: Jamaal Green [cre, aut] ,
Liming Wang [aut],
Dillon Mahmoudi [aut] ,
Matthew Rogers [ctb],
Kyle Walker [ctb],
Eli Pousson [ctb]
Maintainer: Jamaal Green <jamaal.green@gmail.com>
Diff between lehdr versions 1.1.4 dated 2024-11-21 and 1.2.0 dated 2026-08-22
lehdr-1.1.4/lehdr/man/aggregate_lodes_df.Rd |only lehdr-1.2.0/lehdr/.Rinstignore |only lehdr-1.2.0/lehdr/DESCRIPTION | 60 lehdr-1.2.0/lehdr/LICENSE | 2 lehdr-1.2.0/lehdr/MD5 | 87 lehdr-1.2.0/lehdr/NAMESPACE | 60 lehdr-1.2.0/lehdr/R/compute_commute_stats.R |only lehdr-1.2.0/lehdr/R/compute_earnings_share.R |only lehdr-1.2.0/lehdr/R/compute_lodes_change.R |only lehdr-1.2.0/lehdr/R/grab_crosswalk.R | 239 +- lehdr-1.2.0/lehdr/R/lehdr-package.R |only lehdr-1.2.0/lehdr/R/lehdr.R | 883 ++++++--- lehdr-1.2.0/lehdr/R/zzz.R |only lehdr-1.2.0/lehdr/README.md | 481 +++-- lehdr-1.2.0/lehdr/build/vignette.rds |binary lehdr-1.2.0/lehdr/inst/CITATION | 12 lehdr-1.2.0/lehdr/inst/doc/fig1_balt_self_containment.png |only lehdr-1.2.0/lehdr/inst/doc/fig2_md_job_change.png |only lehdr-1.2.0/lehdr/inst/doc/fig3_md_earnings_shares.png |only lehdr-1.2.0/lehdr/inst/doc/fig4_balt_accessibility.png |only lehdr-1.2.0/lehdr/inst/doc/getting_started.R | 346 ++- lehdr-1.2.0/lehdr/inst/doc/getting_started.Rmd | 621 ++++-- lehdr-1.2.0/lehdr/inst/doc/getting_started.html | 1293 ++++++++------ lehdr-1.2.0/lehdr/man/compute_commute_stats.Rd |only lehdr-1.2.0/lehdr/man/compute_earnings_share.Rd |only lehdr-1.2.0/lehdr/man/compute_lodes_change.Rd |only lehdr-1.2.0/lehdr/man/grab_crosswalk.Rd | 80 lehdr-1.2.0/lehdr/man/grab_lodes.Rd | 221 +- lehdr-1.2.0/lehdr/man/lehdr-package.Rd |only lehdr-1.2.0/lehdr/tests/testthat.R | 10 lehdr-1.2.0/lehdr/tests/testthat/_problems |only lehdr-1.2.0/lehdr/tests/testthat/test-lehdr.R | 1206 +++++++++++-- lehdr-1.2.0/lehdr/vignettes/.install_extras |only lehdr-1.2.0/lehdr/vignettes/figures |only lehdr-1.2.0/lehdr/vignettes/getting_started.Rmd | 621 ++++-- 35 files changed, 4378 insertions(+), 1844 deletions(-)
Title: Correlation-Based and Model-Based Predictor Pruning
Description: Provides functions for predictor pruning using association-based and model-based approaches. Includes corrPrune() for fast correlation-based pruning, modelPrune() for regression pruning on the variance inflation factor (VIF) and the condition number, and exact graph-theoretic algorithms (Eppstein–Löffler–Strash, Bron–Kerbosch) for exhaustive subset enumeration. Supports linear models, generalized linear models (GLMs), and mixed models ('lme4', 'glmmTMB').
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between corrselect versions 3.2.3 dated 2026-07-18 and 3.3.0 dated 2026-08-22
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corrselect-3.3.0/corrselect/src/utils.cpp | 50 corrselect-3.3.0/corrselect/src/utils.h | 21 corrselect-3.3.0/corrselect/tests/testthat/test-CorrCombo.R | 32 corrselect-3.3.0/corrselect/tests/testthat/test-assocSelect.R | 2475 ++--- corrselect-3.3.0/corrselect/tests/testthat/test-corrMatSelect-bron-kerbosch.R | 767 - corrselect-3.3.0/corrselect/tests/testthat/test-corrPrune.R | 4291 ++++---- corrselect-3.3.0/corrselect/tests/testthat/test-modelPrune.R | 4813 +++++----- corrselect-3.3.0/corrselect/tests/testthat/test-reference-associations.R | 140 corrselect-3.3.0/corrselect/vignettes/advanced.Rmd | 2323 ++-- corrselect-3.3.0/corrselect/vignettes/comparison.Rmd | 74 corrselect-3.3.0/corrselect/vignettes/quickstart.Rmd | 768 - corrselect-3.3.0/corrselect/vignettes/theory.Rmd | 3270 +++--- corrselect-3.3.0/corrselect/vignettes/workflows.Rmd | 84 corrselect-3.3.0/corrselect/vignettes/workflows_cache/html/unnamed-chunk-10_0d4627349ae729beadb10ec6f22b8fcf.RData |only 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Title: Supervised Variational Autoencoder Regression via 'reticulate'
Description: Supervised latent-variable regression for high-dimensional predictors
such as soil reflectance spectra. The model uses an encoder-decoder neural
network with a stochastic Gaussian latent representation regularized by a
Kullback-Leibler term, and a supervised prediction head trained jointly with
the reconstruction objective. The implementation interfaces R with a 'Python'
deep-learning backend and provides utilities for training, tuning, and
prediction.
Author: Hugo Rodrigues [aut, cre],
Alexandre M. J.-C. Wadoux [cph] , from which the bundled 'datsoilspc' dataset is
redistributed)
Maintainer: Hugo Rodrigues <rodrigues.machado.hugo@gmail.com>
Diff between soilVAE versions 0.1.9 dated 2026-03-17 and 0.1.10 dated 2026-08-22
DESCRIPTION | 18 ++++++++++++------ LICENSE | 2 +- MD5 | 21 +++++++++++---------- NEWS.md | 10 ++++++++++ R/datsoilspc.R | 38 ++++++++++++++++++++++++++------------ README.md | 8 ++++++++ build/vignette.rds |binary inst/COPYRIGHTS |only inst/doc/soilVAE-workflow.Rmd | 2 ++ inst/doc/soilVAE-workflow.html | 9 +++++++-- man/datsoilspc.Rd | 40 +++++++++++++++++++++++++++------------- vignettes/soilVAE-workflow.Rmd | 2 ++ 12 files changed, 106 insertions(+), 44 deletions(-)
Title: ROBust INference for Covariate Adjustment in Randomized Clinical
Trials
Description: Performs robust estimation and inference when using covariate adjustment
and/or covariate-adaptive randomization in randomized controlled trials.
This package is trimmed to reduce the dependencies and validated to be used across industry.
See "FDA's final guidance on covariate adjustment"<https://www.regulations.gov/docket/FDA-2019-D-0934>, Tsiatis (2008) <doi:10.1002/sim.3113>,
Bugni et al. (2018) <doi:10.1080/01621459.2017.1375934>, Ye, Shao, Yi, and Zhao (2023)<doi:10.1080/01621459.2022.2049278>,
Ye, Shao, and Yi (2022)<doi:10.1093/biomet/asab015>, Rosenblum and van der Laan (2010)<doi:10.2202/1557-4679.1138>,
Wang et al. (2021)<doi:10.1080/01621459.2021.1981338>, Ye, Bannick, Yi, and Shao (2023)<doi:10.1080/24754269.2023.2205802>,
and Bannick, Shao, Liu, Du, Yi, and Ye (2024)<doi:10.48550/arXiv.2306.10213>.
Author: Liming Li [aut, cre] ,
Marlena Bannick [aut] ,
Daniel Sabanes Bove [aut] ,
Dong Xi [aut],
Ting Ye [aut],
Yanyao Yi [aut],
Gregory Chen [ctb],
Gilead Sciences, Inc. [cph, fnd],
F. Hoffmann-La Roche AG [cph, fnd],
Merck Sharp & Dohme, Inc. [cph, fnd],
[...truncated...]
Maintainer: Liming Li <liming.li1@astrazeneca.com>
Diff between RobinCar2 versions 0.2.3 dated 2026-07-02 and 0.2.4 dated 2026-08-22
DESCRIPTION | 12 ++-- MD5 | 37 ++++++------- NAMESPACE | 1 NEWS.md | 14 +++++ R/RobinCar2-package.R | 2 R/survival.R | 74 +++++++++++++++++++++++---- build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/intro.html | 16 +++-- man/RobinCar2-package.Rd | 1 man/h_log_hr_est_via_score.Rd | 9 ++- man/randomization_schema.Rd | 4 - man/robin_surv.Rd | 5 + man/robin_surv_comparison.Rd | 1 man/surv_control.Rd |only man/survival_comparison_functions.Rd | 22 +++++++- tests/testthat/_snaps/surv_effect.md | 10 +-- tests/testthat/_snaps/survival.md | 44 ++++++++-------- tests/testthat/test-predict_counterfactual.R | 8 +- tests/testthat/test-survival.R | 68 ++++++++++++++++++++++++ 20 files changed, 249 insertions(+), 81 deletions(-)
Title: Slice into 'Zarr' Arrays
Description: An implementation of chunked, compressed,
N-dimensional arrays for R. 'Zarr' spec V2 (2024)
<doi:10.5281/zenodo.11320255>.
Author: David Blodgett [cre, aut] ,
Mark Keller [aut] ,
Artuer Manukyan [aut] ,
zarr-developers [cph]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between pizzarr versions 0.2.0 dated 2026-04-20 and 0.2.1 dated 2026-08-22
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Title: Tests for Departure from Normality
Description: A toolkit for assessing data normality using a comprehensive collection of statistical methods.
It includes descriptive measures and formal hypothesis tests, such as skewness and kurtosis tests,
the Anderson–Darling test, the Shapiro–Wilk test, and the D'Agostino–Pearson K2 omnibus test.
Author: Joon-Keat Lai [aut, cre, cph]
Maintainer: Joon-Keat Lai <p10911004@gmail.com>
Diff between normality versions 0.0.3 dated 2026-07-07 and 0.0.4 dated 2026-08-22
DESCRIPTION | 8 MD5 | 37 - NAMESPACE | 1 NEWS.md | 7 R/Anderson_Darling_test.R | 10 R/Cramer_von_Mises_test.R |only R/D.Agostino_Pearson_test.R | 657 ++++++++++++++-------------- R/Jarque_Bera_test.R | 213 ++++----- R/Shapiro_Wilk_test.R | 19 R/check_normality.R | 123 ++++- R/is_normal.R | 3 R/kurtosis.R | 3 R/skewness.R | 5 R/utils.R | 8 README.md | 9 man/Anderson_Darling_test.Rd | 8 man/Cramer_von_Mises_test.Rd |only man/check_normality.Rd | 41 - man/is_normal.Rd | 3 tests/testthat/test-Cramer_von_Mises_test.R |only tests/testthat/test-check_normality.R | 6 21 files changed, 638 insertions(+), 523 deletions(-)
Title: Lightweight Interface to TIGER/Line Shapefiles
Description: Download geographic shapes from the United States Census Bureau
TIGER/Line Shapefiles <https://www.census.gov/geographies/mapping-files/time-series/geo/tiger-line-file.html>.
Functions support downloading and reading in geographic boundary data.
All downloads can be set up with a cache to avoid multiple downloads.
Data is available back to 2000 for most geographies.
Author: Christopher T. Kenny [aut, cre] ,
Cory McCartan [aut]
Maintainer: Christopher T. Kenny <ctkenny@proton.me>
Diff between tinytiger versions 0.0.11 dated 2025-10-24 and 0.0.12 dated 2026-08-22
tinytiger-0.0.11/tinytiger/inst/templates |only tinytiger-0.0.11/tinytiger/tests/testthat/setup.R |only tinytiger-0.0.12/tinytiger/DESCRIPTION | 14 tinytiger-0.0.12/tinytiger/MD5 | 92 +-- tinytiger-0.0.12/tinytiger/NEWS.md | 7 tinytiger-0.0.12/tinytiger/R/download.R | 7 tinytiger-0.0.12/tinytiger/R/lookup.R | 4 tinytiger-0.0.12/tinytiger/R/tinytiger-package.R | 9 tinytiger-0.0.12/tinytiger/README.md | 276 +++++++++- tinytiger-0.0.12/tinytiger/build/vignette.rds |binary tinytiger-0.0.12/tinytiger/man/tinytiger-package.Rd | 14 tinytiger-0.0.12/tinytiger/tests/testthat/test-address_ranges.R | 10 tinytiger-0.0.12/tinytiger/tests/testthat/test-ai_an_nh_areas.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-anrc.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-area_landmarks.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-area_water.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-block_groups.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-cbsa.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-coastline.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-congressional_districts.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-consolidated_cities.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-counties.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-county_subdivisions.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-csa.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-elementary_school_districts.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-estates.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-linear_water.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-metropolitan_divisions.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-new_england_city_divisions.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-new_england_combined_areas.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-places.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-point_landmarks.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-polygon_edges.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-polygon_faces.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-primary_roads.R | 10 tinytiger-0.0.12/tinytiger/tests/testthat/test-primary_secondary_roads.R | 10 tinytiger-0.0.12/tinytiger/tests/testthat/test-puma.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-rails.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-roads.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-state_leg_upper.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-states.R | 10 tinytiger-0.0.12/tinytiger/tests/testthat/test-subbarrio.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-tract.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-tribal_block_groups.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-tribal_tracts.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-uac.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-unified_school_districts.R | 9 tinytiger-0.0.12/tinytiger/tests/testthat/test-voting_districts.R | 9 48 files changed, 518 insertions(+), 242 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include geometric operations such as intersect and buffer. Raster methods include local, focal, global, zonal and geometric operations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/> to get started.
Author: Robert J. Hijmans [cre, aut] ,
Andrew Brown [aut] ,
A. Marcia Barbosa [aut] ,
Emanuele Cordano [aut] ,
Krzysztof Dyba [aut] ,
Roger Bivand [ctb] ,
Michael Chirico [ctb] ,
Edzer Pebesma [ctb] ,
Barry Rowlingson [ctb] ,
Michael D. Sumner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.9-34 dated 2026-06-19 and 1.9-46 dated 2026-08-22
terra-1.9-34/terra/man/NIPD.Rd |only terra-1.9-46/terra/DESCRIPTION | 21 terra-1.9-46/terra/MD5 | 244 ++-- terra-1.9-46/terra/NAMESPACE | 49 terra-1.9-46/terra/NEWS.md | 51 - terra-1.9-46/terra/R/Agenerics.R | 8 terra-1.9-46/terra/R/animate.R | 4 terra-1.9-46/terra/R/as.arrows.R |only terra-1.9-46/terra/R/coerce.R | 2 terra-1.9-46/terra/R/crs.R | 24 terra-1.9-46/terra/R/distance.R | 15 terra-1.9-46/terra/R/extract.R | 27 terra-1.9-46/terra/R/gdal.R | 10 terra-1.9-46/terra/R/generics.R | 29 terra-1.9-46/terra/R/geom.R | 1 terra-1.9-46/terra/R/lines.R | 100 + terra-1.9-46/terra/R/options.R | 33 terra-1.9-46/terra/R/plot_add.R | 31 terra-1.9-46/terra/R/plot_cartogram.R | 2 terra-1.9-46/terra/R/plot_let.R | 136 ++ terra-1.9-46/terra/R/rast.R | 14 terra-1.9-46/terra/R/relate.R | 9 terra-1.9-46/terra/R/sample.R | 23 terra-1.9-46/terra/R/spatvec.R | 17 terra-1.9-46/terra/R/tile_apply.R | 2 terra-1.9-46/terra/R/time.R | 1 terra-1.9-46/terra/R/vect.R | 23 terra-1.9-46/terra/R/watershed.R | 34 terra-1.9-46/terra/R/wrap.R | 11 terra-1.9-46/terra/R/z_show.R | 4 terra-1.9-46/terra/build/partial.rdb |binary terra-1.9-46/terra/inst/tinytest/test_misc-raster.R | 9 terra-1.9-46/terra/inst/tinytest/test_nc.R | 4 terra-1.9-46/terra/inst/tinytest/test_sample.R | 9 terra-1.9-46/terra/inst/tinytest/test_tile_apply.R | 10 terra-1.9-46/terra/inst/tinytest/test_time.R | 35 terra-1.9-46/terra/inst/tinytest/test_vect-z.R |only terra-1.9-46/terra/man/NAflag.Rd | 2 terra-1.9-46/terra/man/NIDP.Rd |only terra-1.9-46/terra/man/add_mtext.Rd | 16 terra-1.9-46/terra/man/as.arrows.Rd |only terra-1.9-46/terra/man/cellSize.Rd | 2 terra-1.9-46/terra/man/centroids.Rd | 15 terra-1.9-46/terra/man/clamp.Rd | 4 terra-1.9-46/terra/man/click.Rd | 2 terra-1.9-46/terra/man/compareGeom.Rd | 5 terra-1.9-46/terra/man/convhull.Rd | 2 terra-1.9-46/terra/man/crop.Rd | 7 terra-1.9-46/terra/man/crs.Rd | 6 terra-1.9-46/terra/man/draw.Rd | 2 terra-1.9-46/terra/man/extract.Rd | 4 terra-1.9-46/terra/man/flowAccumulation.Rd | 2 terra-1.9-46/terra/man/flowDir.Rd |only terra-1.9-46/terra/man/focal.Rd | 2 terra-1.9-46/terra/man/furdist.Rd |only terra-1.9-46/terra/man/gdal.Rd | 6 terra-1.9-46/terra/man/has.geoloc.Rd |only terra-1.9-46/terra/man/has.z.Rd |only terra-1.9-46/terra/man/is.flipped.Rd | 2 terra-1.9-46/terra/man/is.rotated.Rd | 2 terra-1.9-46/terra/man/lines.Rd | 14 terra-1.9-46/terra/man/north.Rd | 2 terra-1.9-46/terra/man/pitfiller.Rd |only terra-1.9-46/terra/man/pitfinder.Rd | 44 terra-1.9-46/terra/man/plet.Rd | 34 terra-1.9-46/terra/man/project.Rd | 272 ++--- terra-1.9-46/terra/man/rectify.Rd | 3 terra-1.9-46/terra/man/regress.Rd | 9 terra-1.9-46/terra/man/replace_values.Rd | 2 terra-1.9-46/terra/man/resample.Rd | 2 terra-1.9-46/terra/man/rescale.Rd | 2 terra-1.9-46/terra/man/select.Rd | 4 terra-1.9-46/terra/man/snapTo.Rd |only terra-1.9-46/terra/man/stretch.Rd | 2 terra-1.9-46/terra/man/terra-package.Rd | 69 + terra-1.9-46/terra/man/terraOptions.Rd | 4 terra-1.9-46/terra/man/vect.Rd | 2 terra-1.9-46/terra/man/writeCDF.Rd | 4 terra-1.9-46/terra/man/writeRaster.Rd | 6 terra-1.9-46/terra/src/RcppFunctions.cpp | 32 terra-1.9-46/terra/src/RcppModule.cpp | 55 - terra-1.9-46/terra/src/arith.cpp | 24 terra-1.9-46/terra/src/catchments.cpp | 1020 +++++++++++++++----- terra-1.9-46/terra/src/catchments.h |only terra-1.9-46/terra/src/crs.cpp | 10 terra-1.9-46/terra/src/crs.h | 2 terra-1.9-46/terra/src/date.h | 14 terra-1.9-46/terra/src/distRaster.cpp | 64 - terra-1.9-46/terra/src/distValueRaster.cpp | 12 terra-1.9-46/terra/src/distVector.cpp | 30 terra-1.9-46/terra/src/distance.cpp | 24 terra-1.9-46/terra/src/extract.cpp | 33 terra-1.9-46/terra/src/file_utils.cpp | 4 terra-1.9-46/terra/src/focal.cpp | 613 +++++++----- terra-1.9-46/terra/src/gdal_algs.cpp | 318 ++++-- terra-1.9-46/terra/src/gdal_multidimensional.cpp | 845 ++++++++++++---- terra-1.9-46/terra/src/gdalio.cpp | 137 ++ terra-1.9-46/terra/src/gdalio.h | 19 terra-1.9-46/terra/src/geos_methods.cpp | 469 ++++++++- terra-1.9-46/terra/src/geos_spat.h | 165 ++- terra-1.9-46/terra/src/memory.cpp | 16 terra-1.9-46/terra/src/merge.cpp | 6 terra-1.9-46/terra/src/raster_methods.cpp | 46 terra-1.9-46/terra/src/rasterize.cpp | 154 +-- terra-1.9-46/terra/src/read.cpp | 1 terra-1.9-46/terra/src/read_gdal.cpp | 394 +++++-- terra-1.9-46/terra/src/read_ogr.cpp | 100 + terra-1.9-46/terra/src/sample.cpp | 16 terra-1.9-46/terra/src/show.cpp | 33 terra-1.9-46/terra/src/spatBase.h | 25 terra-1.9-46/terra/src/spatDataframe.cpp | 4 terra-1.9-46/terra/src/spatDataframe.h | 14 terra-1.9-46/terra/src/spatFactor.h | 16 terra-1.9-46/terra/src/spatNetwork_gnm.cpp | 6 terra-1.9-46/terra/src/spatRaster.cpp | 273 +++-- terra-1.9-46/terra/src/spatRaster.h | 234 +++- terra-1.9-46/terra/src/spatRasterMultiple.cpp | 18 terra-1.9-46/terra/src/spatRasterMultiple.h | 16 terra-1.9-46/terra/src/spatSources.cpp | 123 +- terra-1.9-46/terra/src/spatTime.cpp | 43 terra-1.9-46/terra/src/spatTime.h | 16 terra-1.9-46/terra/src/spatVector.cpp | 206 +++- terra-1.9-46/terra/src/spatVector.h | 45 terra-1.9-46/terra/src/vecmath.h | 18 terra-1.9-46/terra/src/vecmathse.cpp | 10 terra-1.9-46/terra/src/vector_methods.cpp | 21 terra-1.9-46/terra/src/write.cpp | 6 terra-1.9-46/terra/src/write_gdal.cpp | 86 - terra-1.9-46/terra/src/write_ogr.cpp | 45 129 files changed, 5288 insertions(+), 2141 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <https://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] ,
Heidi Seibold [ctb] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-29 dated 2026-07-17 and 1.3-0 dated 2026-08-22
partykit-1.2-29/partykit/R/zzz.R |only partykit-1.2-29/partykit/inst/REFERENCES.bib.sav |only partykit-1.3-0/partykit/DESCRIPTION | 15 - partykit-1.3-0/partykit/MD5 | 91 ++++---- partykit-1.3-0/partykit/NAMESPACE | 67 +++-- partykit-1.3-0/partykit/R/S3.R |only partykit-1.3-0/partykit/R/as.party.R | 10 partykit-1.3-0/partykit/R/cforest.R | 5 partykit-1.3-0/partykit/R/ctree.R | 8 partykit-1.3-0/partykit/R/modelparty.R | 45 +++- partykit-1.3-0/partykit/R/party.R | 11 partykit-1.3-0/partykit/R/plot.R | 5 partykit-1.3-0/partykit/R/pmmlTreeModel.R | 5 partykit-1.3-0/partykit/R/print.R | 6 partykit-1.3-0/partykit/R/prune.R | 5 partykit-1.3-0/partykit/R/varimp.R | 21 + partykit-1.3-0/partykit/build/partial.rdb |binary partykit-1.3-0/partykit/build/vignette.rds |binary partykit-1.3-0/partykit/cleanup | 38 +-- partykit-1.3-0/partykit/inst/NEWS.Rd | 42 ++- partykit-1.3-0/partykit/inst/REFERENCES.bib | 8 partykit-1.3-0/partykit/inst/doc/constparty.pdf |binary partykit-1.3-0/partykit/inst/doc/ctree.pdf |binary partykit-1.3-0/partykit/inst/doc/mob.R | 117 +++++----- partykit-1.3-0/partykit/inst/doc/mob.Rnw | 180 ++++++++-------- partykit-1.3-0/partykit/inst/doc/mob.pdf |binary partykit-1.3-0/partykit/inst/doc/partykit.pdf |binary partykit-1.3-0/partykit/man/cforest.Rd | 1 partykit-1.3-0/partykit/man/ctree.Rd | 4 partykit-1.3-0/partykit/man/glmtree.Rd | 41 +-- partykit-1.3-0/partykit/man/mob.Rd | 52 ++-- partykit-1.3-0/partykit/man/party-methods.Rd | 1 partykit-1.3-0/partykit/man/prune.modelparty.Rd | 8 partykit-1.3-0/partykit/man/varimp.Rd | 1 partykit-1.3-0/partykit/tests/bugfixes.Rout.save | 4 partykit-1.3-0/partykit/tests/constparty.Rout.save | 4 partykit-1.3-0/partykit/tests/regtest-MIA.Rout.save | 4 partykit-1.3-0/partykit/tests/regtest-cforest.Rout.save | 4 partykit-1.3-0/partykit/tests/regtest-ctree.Rout.save | 4 partykit-1.3-0/partykit/tests/regtest-glmtree.R | 21 - partykit-1.3-0/partykit/tests/regtest-glmtree.Rout.save | 44 +-- partykit-1.3-0/partykit/tests/regtest-nmax.Rout.save | 4 partykit-1.3-0/partykit/tests/regtest-node.Rout.save | 4 partykit-1.3-0/partykit/tests/regtest-party.Rout.save | 76 +++--- partykit-1.3-0/partykit/tests/regtest-split.Rout.save | 4 partykit-1.3-0/partykit/tests/regtest-weights.R | 33 +- partykit-1.3-0/partykit/tests/regtest-weights.Rout.save | 46 ++-- partykit-1.3-0/partykit/vignettes/mob.Rnw | 180 ++++++++-------- 48 files changed, 697 insertions(+), 522 deletions(-)
Title: Model Context Protocol Servers and Clients
Description: Implements the Model Context Protocol (MCP). Users can start
'R'-based servers, serving functions as tools for large language
models to call before responding to the user in MCP-compatible apps
like 'Claude Desktop' and 'Claude Code', with options to run those
tools inside of interactive 'R' sessions. On the other end, when 'R'
is the client via the 'ellmer' package, users can register tools from
third-party MCP servers to integrate additional context into chats.
Author: Simon Couch [aut, cre] ,
Winston Chang [aut] ,
Charlie Gao [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Simon Couch <simon.couch@posit.co>
Diff between mcptools versions 1.0.1 dated 2026-07-27 and 1.0.2 dated 2026-08-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test-socket-dir.R | 4 ++-- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Discrete p-Value Combination Tests
Description: Provides tools for performing p-value combination tests with discrete input p-values. These tests combine significance evidence derived from independent discrete statistics to test a global null hypothesis, which is defined by the specified null distribution(s) of these discrete statistics. The testing procedure involves two main steps:
(1) Wasserstein Adjustment: Each component of the combination statistic is replaced by an adjusted Z statistic. This adjustment, based on the minimum Wasserstein distance, preserves the discrete nature of the original statistics while better aligning them with their counterparts under continuity.
(2) Calculation of the Significance of the Combination Statistic: A continuous distribution that optimally matches the discrete distribution of the combination statistic is obtained, and the testing p-value for the global null hypothesis is computed.
The first step is analogous to Lancaster's approach but is generalized based on Wasserstein optimization. The se [...truncated...]
Author: Gonzalo Contador [aut],
Shuaichuan Feng [aut],
Zheyang Wu [aut, cre]
Maintainer: Zheyang Wu <zheyangwu@wpi.edu>
Diff between DPComb versions 1.0 dated 2026-06-19 and 1.0.1 dated 2026-08-22
DESCRIPTION | 18 ++++++++++-------- MD5 | 3 ++- NEWS.md |only 3 files changed, 12 insertions(+), 9 deletions(-)
Title: Miscellaneous Functions for Panel Data, Quantiles, and Printing
Results
Description: These are miscellaneous functions for working with panel data, quantiles, and printing results. For panel data, the package includes functions for making a panel data balanced (that is, dropping missing individuals that have missing observations in any time period), converting id numbers to row numbers, and to treat repeated cross sections as panel data under the assumption of rank invariance. For quantiles, there are functions to make distribution functions from a set of data points (this is particularly useful when a distribution function is created in several steps), to combine distribution functions based on some external weights, and to invert distribution functions. Finally, there are several other miscellaneous functions for obtaining weighted means, weighted distribution functions, and weighted quantiles; to generate summary statistics and their differences for two groups; and to add or drop covariates from formulas. Additional utilities support staggered treatment adoption [...truncated...]
Author: Brantly Callaway [aut, cre],
Grant McDermott [ctb]
Maintainer: Brantly Callaway <brantly.callaway@uga.edu>
Diff between BMisc versions 1.4.9 dated 2026-06-11 and 1.4.10 dated 2026-08-22
DESCRIPTION | 18 +- MD5 | 32 ++-- NAMESPACE | 17 -- NEWS.md | 48 ++++++ R/BMisc.R | 312 +++++++++++++++++++++++++++++++------------ R/imports.R | 7 README.md | 12 - inst/CITATION | 4 man/BMisc.Rd | 5 man/check_staggered.Rd | 16 +- man/check_staggered_inner.Rd | 10 + man/get_Yit.Rd | 3 man/makeBalancedPanel.Rd | 8 - man/make_balanced_panel.Rd | 16 +- man/set_balanced_panel.Rd |only man/sort_panel.Rd |only tests/testthat/test-BMisc.R | 43 +++++ tests/testthat/test-panel.R | 184 +++++++++++++++++++++++++ 18 files changed, 586 insertions(+), 149 deletions(-)
Title: An R Package for Evaluating Expertise Indices for Research
Strength Assessment
Description: Institutional performance assessment remains a key challenge to a multitude of stakeholders. Existing indicators such as h-type indicators, g-type indicators, and many others do not reflect expertise of institutions that defines their research portfolio. The package offers functionality to compute and visualise two novel indices: the x-index and the xd-index. The x-index evaluates an institution's scholarly expertise within a specific discipline or field, while the xd-index provides a broader assessment of overall scholarly expertise considering an institution's publication pattern and strengths across coarse thematic areas. These indices offer a nuanced understanding of institutional research capabilities, aiding stakeholders in research management and resource allocation decisions. For further details, see Lathabai, H.H., Nandy, A., and Singh, V.K. (2021) <doi:10.1007/s11192-021-04188-3>, and Nandy, A., Lathabai, H.H., and Singh, V.K. (2023) <doi:10.5281/zenodo.8305585>. [...truncated...]
Author: Nilabhra R Das [cre, aut] ,
Abhirup Nandy [aut]
Maintainer: Nilabhra R Das <nr.das@yahoo.com>
Diff between xxdi versions 1.26.4 dated 2026-04-30 and 1.26.8 dated 2026-08-22
DESCRIPTION | 11 +--- MD5 | 24 ++++----- NAMESPACE | 19 ------- NEWS.md | 7 ++ R/g_index.R | 30 +++++++---- R/h_index.R | 30 ++++++----- R/ivw_xd_index.R | 92 +++++++++++++++++++++-------------- R/x_index.R | 42 +++++++++++----- R/xc_index.R | 61 +++++++++++++++-------- R/xd_index.R | 134 +++++++++++++++++++++++++++++++--------------------- R/xo_index.R | 68 +++++++++++++++++--------- man/ivw_xd_index.Rd | 5 + man/xd_index.Rd | 16 ++++-- 13 files changed, 327 insertions(+), 212 deletions(-)
Title: Tools for Wikidata and Wikipedia
Description: A set of wrappers intended to check, read and download information from the Wikimedia sources. It is specifically created to work with names of celebrities, in which case their information and statistics can be downloaded. Additionally, it also builds links and snippets to use in combination with the function gallery() in netCoin package.
Author: Modesto Escobar [aut, cph, cre] ,
Angel Zazo [aut],
Carlos Prieto [aut] ,
David Barrios [aut],
Cristina Calvo [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between wikiTools versions 1.2.24 dated 2026-05-25 and 1.2.26 dated 2026-08-22
DESCRIPTION | 10 +- MD5 | 44 ++++++------- R/wiki_utils.R | 4 + README.md | 4 - build/vignette.rds |binary inst/doc/wiki_utils.R | 2 inst/doc/wiki_utils.Rmd | 2 inst/doc/wiki_utils.html | 159 +++-------------------------------------------- man/filext.Rd | 58 ++++++++--------- man/getFiles.Rd | 102 +++++++++++++++--------------- man/getWikiFiles.Rd | 88 +++++++++++++------------- man/httrGetJSON.Rd | 62 +++++++++--------- man/nametoWikiFrame.Rd | 74 ++++++++++----------- man/nametoWikiHtml.Rd | 70 ++++++++++---------- man/nametoWikiURL.Rd | 74 ++++++++++----------- man/preName.Rd | 60 ++++++++--------- man/searchWiki.Rd | 96 ++++++++++++++-------------- man/selectLang.Rd | 48 +++++++------- man/urltoFrame.Rd | 70 ++++++++++---------- man/urltoHtml.Rd | 86 ++++++++++++------------- man/v_dfVIAF.Rd | 88 +++++++++++++------------- man/validUrl.Rd | 56 ++++++++-------- vignettes/wiki_utils.Rmd | 2 23 files changed, 568 insertions(+), 691 deletions(-)
Title: Segments Accelerometry Data into Walking Bouts using Open Source
Methods
Description: Segments walking from accelerometry data using 'forest' python
module <https://github.com/onnela-lab/forest> from Yi (2025) <doi:10.2196/71375>,
'Verisense' original from Rowlands (2022) <doi:10.1080/02640414.2022.2147134>
and 'Verisense' revised from Maylor (2022) <doi:10.3390/s22249984>,
and Step Detection Threshold (SDT) from Ducharme (2021)
<doi:10.1123/jmpb.2021-0011> methods.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between walking versions 0.7.0 dated 2026-08-03 and 0.8.0 dated 2026-08-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/find_walking.R | 17 ++++++++++++++++- man/find_walking.Rd | 7 ++++++- 5 files changed, 34 insertions(+), 10 deletions(-)
Title: Client for US Treasury XML Feed and Published Data
Description: Download daily interest rates from the US Treasury XML feed.
Leveraging
<https://home.treasury.gov/treasury-daily-interest-rate-xml-feed>,
this package serves as a wrapper, facilitating the retrieval of daily
treasury rates across various categories, including par yield curves,
treasury bills, long-term rates, and real yield curves. In addition,
it provides access to the monthly published yield curve datasets,
including the High Quality Market (HQM) corporate bond yield curve and
the Treasury nominal and real coupon-issue (TNC, TRC) and breakeven
inflation (TBI) curves.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between treasury versions 0.6.0 dated 2026-07-11 and 0.7.0 dated 2026-08-22
DESCRIPTION | 14 ++++++++----- MD5 | 26 +++++++++++++------------ NAMESPACE | 24 ++++++++++++----------- NEWS.md | 6 +++++ R/httr2.R | 4 ++- R/interest-rate.R | 7 ++---- R/utils.R | 2 - R/yield-curve.R | 36 ++++++++++++++++++++++++++++------- README.md | 12 +++++------ man/tr_bill_rate.Rd | 7 ++---- man/tr_curve_rate.Rd | 4 ++- tests/testthat/_snaps/yield-curve.md |only tests/testthat/test-httr2.R |only tests/testthat/test-interest-rate.R | 2 - tests/testthat/test-yield-curve.R | 5 ++++ 15 files changed, 96 insertions(+), 53 deletions(-)
Title: Deep Neural Networks for Survival Analysis with R 'torch'
Description: Provides deep learning models for right-censored survival data using the 'torch' backend.
Supports multiple loss functions, including Cox partial likelihood, L2-penalized Cox, time-dependent Cox,
and accelerated failure time (AFT) loss. Offers a formula-based interface, built-in support for cross-validation,
hyperparameter tuning, survival curve plotting, and evaluation metrics such as the C-index, Brier score,
and integrated Brier score. For methodological details, see Kvamme et al. (2019) <https://www.jmlr.org/papers/v20/18-424.html>.
The package is described in El Badisy (2026) <doi:10.32614/RJ-2026-008>.
Author: Imad El Badisy [aut, cre],
Daniel Falbel [ctb]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
Diff between survdnn versions 0.7.6 dated 2026-04-29 and 1.0.0 dated 2026-08-22
DESCRIPTION | 30 ++++++++++++-------- MD5 | 7 ++-- NEWS.md | 11 +++++++ README.md | 88 +++++++++++++++++++++++++++++++++++++----------------------- inst |only 5 files changed, 88 insertions(+), 48 deletions(-)
Title: Interpretable Survival Machine Learning Framework
Description: A modular toolkit for interpretable survival machine learning
with a unified interface for fitting, prediction, evaluation, and
interpretation.
It includes semiparametric, parametric, tree-based, ensemble, boosting,
kernel, and deep-learning survival learners, together with benchmarking,
scoring, calibration, and model-agnostic interpretation utilities.
Representative methodological anchors include Cox (1972)
<doi:10.1111/j.2517-6161.1972.tb00899.x>, Royston and Parmar (2002)
<doi:10.1002/sim.1203>, Ishwaran et al. (2008) <doi:10.1214/08-AOAS169>,
Jaeger et al. (2019) <doi:10.1214/19-AOAS1261>, Harrell et al. (1982)
<doi:10.1001/jama.1982.03320430047030>, Graf et al. (1999)
<doi:10.1002/(SICI)1097-0258(19990915/30)18:17/18%3C2529::AID-SIM274%3E3.0.CO;2-5>,
Friedman (2001) <doi:10.1214/aos/1013203451>, Apley and Zhu (2020)
<doi:10.1111/rssb.12377>, and Lundberg and Lee (2017)
<https://papers.nips.cc/paper/7062-a-unified-approach-to-inte [...truncated...]
Author: Imad El Badisy [aut, cre]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
This is a re-admission after prior archival of version 0.7.1 dated 2026-04-23
Diff between survalis versions 0.7.1 dated 2026-04-23 and 1.0.0 dated 2026-08-22
DESCRIPTION | 18 - MD5 | 166 ++++++----- NAMESPACE | 41 -- NEWS.md | 290 ++++++++++++++++++++ R/benchmark_default_survlearners.R | 246 ++++++++++------- R/compute_ale.R | 27 + R/compute_calibration.R | 48 +-- R/compute_counterfactual.R | 17 - R/compute_interactions.R | 40 +- R/compute_pdp.R | 49 +-- R/compute_shap.R | 47 ++- R/compute_shap_mean.R | 6 R/compute_surrogate.R | 18 - R/compute_tree_surrogate.R | 16 - R/compute_varimp.R | 103 ++++--- R/dt-utils.R |only R/evaluation.R | 191 ++++++++----- R/fit_bart.R | 17 - R/fit_blackboost.R | 20 - R/fit_bnnsurv.R | 34 -- R/fit_cforest.R | 23 - R/fit_coxboost.R |only R/fit_flexsurvreg.R | 18 - R/fit_glmnet.R | 23 - R/fit_orsf.R | 20 - R/fit_ranger.R | 17 - R/fit_rpart.R | 22 - R/fit_rsf.R | 22 - R/fit_selectcox.R | 18 - R/fit_survdnn.R | 63 ++-- R/fit_survmetalearner.R | 48 +-- R/fit_survsvm.R | 59 ++-- R/fit_xgboost.R | 44 --- R/list_functions.R | 14 R/plot-survcurve.R |only R/survalis-package.R | 17 - R/survmat-helpers.R | 66 ++-- R/theme-survalis.R |only README.md | 425 +++++++++++++++++++----------- build |only man/auc_survmat.Rd | 8 man/benchmark.Rd |only man/best_survlearner.Rd | 2 man/compute_tree_surrogate.Rd | 2 man/compute_varimp.Rd | 10 man/cv_plot.Rd | 8 man/cv_summary.Rd | 9 man/cv_survlearner.Rd | 4 man/figures/README-unnamed-chunk-11-1.png |only man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-14-1.png |binary man/figures/README-unnamed-chunk-15-1.png |binary man/figures/README-unnamed-chunk-15-2.png |only man/figures/README-unnamed-chunk-16-1.png |binary man/figures/README-unnamed-chunk-16-2.png |only man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-18-1.png |binary man/figures/README-unnamed-chunk-19-1.png |only man/figures/README-unnamed-chunk-20-1.png |binary man/figures/README-unnamed-chunk-20-2.png |only man/figures/README-unnamed-chunk-20-3.png |only man/figures/README-unnamed-chunk-22-1.png |only man/fit_coxboost.Rd |only man/list_interpretability_methods.Rd | 2 man/list_metrics.Rd | 2 man/list_survlearners.Rd | 2 man/plot_ale.Rd | 7 man/plot_benchmark.Rd | 8 man/plot_calibration.Rd | 6 man/plot_counterfactual.Rd | 7 man/plot_interactions.Rd | 6 man/plot_pdp.Rd | 7 man/plot_shap.Rd | 6 man/plot_surrogate.Rd | 6 man/plot_survcurve.Rd |only man/plot_survmat.Rd | 7 man/plot_survmetalearner_weights.Rd | 6 man/plot_tree_surrogate.Rd | 14 man/plot_varimp.Rd | 13 man/predict_coxboost.Rd |only man/score_survmodel.Rd | 2 man/summarise_benchmark.Rd | 9 man/summarize_benchmark_results.Rd | 2 man/survalis-package.Rd | 8 man/survalis-scales.Rd |only man/theme_survalis.Rd |only man/timeroc_survmat.Rd |only man/tune_coxboost.Rd |only man/tune_glmnet.Rd | 3 man/tune_survdnn.Rd | 9 tests/testthat/test-benchmark-tuned.R | 36 ++ tests/testthat/test-evaluation.R | 28 + tests/testthat/test-plot-survcurve.R |only tests/testthat/test-survmat-helpers.R | 2 tests/testthat/test-theme-survalis.R |only 95 files changed, 1585 insertions(+), 949 deletions(-)
Title: Tidy Data Validation Reports
Description: Tools for creating data validation pipelines and
tidy reports. This package offers a framework for exploring and
validating data frame like objects using 'dplyr' grammar of data
manipulation.
Author: Evgeni Chasnovski [aut, cre]
Maintainer: Evgeni Chasnovski <evgeni.chasnovski@gmail.com>
Diff between ruler versions 0.3.1 dated 2025-07-28 and 0.3.2 dated 2026-08-22
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- NEWS.md | 4 ++++ R/packs.R | 12 ++++++------ R/rules.R | 3 ++- README.md | 14 +++++++------- build/vignette.rds |binary inst/doc/design-and-format.Rmd | 2 +- inst/doc/design-and-format.html | 8 ++++---- inst/doc/rule-packs.html | 28 ++++++++++++++++------------ inst/doc/validation.html | 10 ++++++---- man/cell-pack.Rd | 4 ++-- man/column-pack.Rd | 2 +- man/rule-packs.Rd | 12 ++++++------ man/ruler-package.Rd | 5 +++++ man/rules.Rd | 2 +- tests/testthat/test-rules.R | 6 ++++-- vignettes/design-and-format.Rmd | 2 +- 18 files changed, 87 insertions(+), 69 deletions(-)
Title: 'Open Scoring' API Client
Description: Creativity research involves the need to score open-ended problems.
Usually done by humans, automatic scoring using AI becomes more
and more accurate. This package provides a simple interface to
the 'Open Scoring' API <https://openscoring.du.edu/docs>, leading creativity scoring technology by
Organiscak et al. (2023) <doi:10.1016/j.tsc.2023.101356>. With it,
you can score your own data directly from an R script.
Author: Jakub Jedrusiak [aut, cre, cph] ,
Peter Organisciak [ctb] ,
Selcuk Acar [ctb] ,
Denis Dumas [ctb] ,
Pier-Luc de Chantal [ctb] ,
Kelly Berthiaume [ctb]
Maintainer: Jakub Jedrusiak <jakub.jedrusiak@uwr.edu.pl>
Diff between openscoring versions 1.1.0 dated 2026-03-24 and 1.2.0 dated 2026-08-22
DESCRIPTION | 16 +++--- MD5 | 16 +++--- NEWS.md | 7 ++ R/ocsai.R | 104 +++++++++++++++++++++++++++++++++++--------- README.md | 63 ++++++++++++++++++++------ build/partial.rdb |binary man/ocsai.Rd | 15 +++++- man/openscoring-package.Rd | 17 ++++--- tests/testthat/test-ocsai.R | 69 ++++++++++++++++++++++++----- 9 files changed, 239 insertions(+), 68 deletions(-)
Title: Mixed-Effects Models with Autocorrelation Structures
Description: Fits longitudinal mixed-effects models through a registered 'C++'
numerical backend. Supported serial covariance structures include first-order
autoregressive (AR(1)), exponential or Ornstein-Uhlenbeck, higher-order
autoregressive (AR(p)), first-order autoregressive moving-average (ARMA(1,1)),
compound symmetry, Toeplitz, and unstructured covariance. Serial processes
can be unified or attached independently to numeric predictor loadings.
Candidate temporal structures can be ranked on a common sample by
dependence-component grouped cross-validation, the Akaike information
criterion, the Bayesian information criterion, or log-likelihood. Clustered,
crossed, and nested random intercepts and slopes are assembled jointly with
diagonal or term-specific unstructured covariance. Available approximation
methods include Laplace, saddlepoint likelihood with latent Laplace
integration, adaptive Gaussian quadrature, full-covariance Gaussian variational
inference, and penalized quasi-likelihood. Pen [...truncated...]
Author: Enoch Kang [aut, cre, trl]
Maintainer: Enoch Kang <y.enoch.kang@gmail.com>
This is a re-admission after prior archival of version 0.9.3 dated 2026-08-08
Diff between MEMWAS versions 0.9.3 dated 2026-08-08 and 0.9.5 dated 2026-08-22
MEMWAS-0.9.3/MEMWAS/man/MEMWAS_tune_methods.Rd |only MEMWAS-0.9.3/MEMWAS/tests/testthat/helper-toy-model.R |only MEMWAS-0.9.3/MEMWAS/tests/testthat/test-compressed-random-design.R |only MEMWAS-0.9.3/MEMWAS/tests/testthat/test-exact-gaussian-derivatives.R |only MEMWAS-0.9.3/MEMWAS/tests/testthat/test-local-rng.R |only MEMWAS-0.9.5/MEMWAS/DESCRIPTION | 62 MEMWAS-0.9.5/MEMWAS/MD5 | 109 MEMWAS-0.9.5/MEMWAS/NAMESPACE | 7 MEMWAS-0.9.5/MEMWAS/NEWS.md | 110 MEMWAS-0.9.5/MEMWAS/R/MEMWAS-package.R | 12 MEMWAS-0.9.5/MEMWAS/R/approximation-tools.R | 80 MEMWAS-0.9.5/MEMWAS/R/check_MEMWAS_assumptions.R | 33 MEMWAS-0.9.5/MEMWAS/R/fit_MEMWAS.R | 865 +++ MEMWAS-0.9.5/MEMWAS/R/helpers-capabilities.R | 86 MEMWAS-0.9.5/MEMWAS/R/helpers-coefficients.R | 47 MEMWAS-0.9.5/MEMWAS/R/helpers-common.R | 26 MEMWAS-0.9.5/MEMWAS/R/helpers-dependence.R |only MEMWAS-0.9.5/MEMWAS/R/helpers-fit_MEMWAS.R | 1111 +++- MEMWAS-0.9.5/MEMWAS/R/helpers-inference.R | 882 +++ MEMWAS-0.9.5/MEMWAS/R/helpers-lagged_data.R | 2 MEMWAS-0.9.5/MEMWAS/R/helpers-random-effects.R | 66 MEMWAS-0.9.5/MEMWAS/R/helpers-serial-component.R | 134 MEMWAS-0.9.5/MEMWAS/R/helpers-simulate_panel_data.R | 10 MEMWAS-0.9.5/MEMWAS/R/helpers-smooth-selection.R |only MEMWAS-0.9.5/MEMWAS/R/helpers-smooths.R |only MEMWAS-0.9.5/MEMWAS/R/helpers-tune_MEMWAS.R | 2483 ++++++++-- MEMWAS-0.9.5/MEMWAS/R/helpers-use-data.R |only MEMWAS-0.9.5/MEMWAS/R/methods-fit.R | 977 +++ MEMWAS-0.9.5/MEMWAS/R/methods-tune.R | 781 +-- MEMWAS-0.9.5/MEMWAS/R/package-init.R | 4 MEMWAS-0.9.5/MEMWAS/R/rank_autocorrelation_structures.R | 185 MEMWAS-0.9.5/MEMWAS/R/screen_MEMWAS_nonlinearity.R | 284 - MEMWAS-0.9.5/MEMWAS/README.md | 429 + MEMWAS-0.9.5/MEMWAS/inst/doc/Introduction-to-MEMWAS.R | 244 MEMWAS-0.9.5/MEMWAS/inst/doc/Introduction-to-MEMWAS.Rmd | 2202 ++++---- MEMWAS-0.9.5/MEMWAS/inst/doc/Introduction-to-MEMWAS.html | 828 +-- MEMWAS-0.9.5/MEMWAS/man/MEMWAS-package.Rd | 12 MEMWAS-0.9.5/MEMWAS/man/MEMWAS_capabilities.Rd | 20 MEMWAS-0.9.5/MEMWAS/man/MEMWAS_fit_methods.Rd | 113 MEMWAS-0.9.5/MEMWAS/man/MEMWAS_nonlinearity_screen_methods.Rd |only MEMWAS-0.9.5/MEMWAS/man/check_MEMWAS_assumptions.Rd | 33 MEMWAS-0.9.5/MEMWAS/man/compare_approximations.Rd | 29 MEMWAS-0.9.5/MEMWAS/man/diagnose_approximation.Rd | 29 MEMWAS-0.9.5/MEMWAS/man/fit_MEMWAS.Rd | 279 - MEMWAS-0.9.5/MEMWAS/man/predict.MEMWAS_fit.Rd | 82 MEMWAS-0.9.5/MEMWAS/man/rank_autocorrelation_structures.Rd | 88 MEMWAS-0.9.5/MEMWAS/man/screen_MEMWAS_nonlinearity.Rd | 111 MEMWAS-0.9.5/MEMWAS/man/serial_component.Rd | 17 MEMWAS-0.9.5/MEMWAS/src/memwas_native.cpp | 1659 +++++- MEMWAS-0.9.5/MEMWAS/tests/testthat.R | 24 MEMWAS-0.9.5/MEMWAS/tests/testthat/helper-MEMWAS.R |only MEMWAS-0.9.5/MEMWAS/tests/testthat/test-MEMWAS_capabilities.R | 13 MEMWAS-0.9.5/MEMWAS/tests/testthat/test-check_MEMWAS_assumptions.R | 19 MEMWAS-0.9.5/MEMWAS/tests/testthat/test-compare_approximations.R | 38 MEMWAS-0.9.5/MEMWAS/tests/testthat/test-diagnose_approximation.R | 24 MEMWAS-0.9.5/MEMWAS/tests/testthat/test-fit_MEMWAS.R | 32 MEMWAS-0.9.5/MEMWAS/tests/testthat/test-rank_autocorrelation_structures.R | 54 MEMWAS-0.9.5/MEMWAS/tests/testthat/test-screen_MEMWAS_nonlinearity.R | 18 MEMWAS-0.9.5/MEMWAS/tests/testthat/test-serial_component.R | 27 MEMWAS-0.9.5/MEMWAS/tests/testthat/test-smooths.R |only MEMWAS-0.9.5/MEMWAS/tests/testthat/test-use_data.R |only MEMWAS-0.9.5/MEMWAS/vignettes/Introduction-to-MEMWAS.Rmd | 2202 ++++---- 62 files changed, 11843 insertions(+), 5139 deletions(-)
Title: Improved Predictors
Description: Improved predictive models by indirect classification and
bagging for classification, regression and survival problems
as well as resampling based estimators of prediction error.
Author: Andrea Peters [aut],
Torsten Hothorn [aut, cre],
Brian D. Ripley [ctb],
Terry Therneau [ctb],
Beth Atkinson [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between ipred versions 0.9-15 dated 2024-07-18 and 0.9-16 dated 2026-08-22
DESCRIPTION | 9 +++++---- MD5 | 32 ++++++++++++++++---------------- R/ipredbagg.R | 18 +++++++++++------- R/irpart.R | 10 ++++------ build/vignette.rds |binary inst/NEWS | 11 ++++++++++- inst/doc/ipred-examples.R | 2 -- inst/doc/ipred-examples.pdf |binary man/DLBCL.Rd | 2 +- man/bagging.Rd | 2 ++ man/bootest.Rd | 1 + man/cv.Rd | 1 + man/errorest.Rd | 9 +++++---- man/inbagg.Rd | 1 + man/inclass.Rd | 1 + man/slda.Rd | 1 + vignettes/ipred.bib | 2 +- 17 files changed, 60 insertions(+), 42 deletions(-)
Title: Integrative Bayesian Multiple Regression for Multi-Platform
Biomarkers
Description: A Bayesian framework that integrates several regression models to
identify a parsimonious set of biomarkers shared across disparate data
platforms (for example genomic, transcriptomic and proteomic assays).
Subjects are partitioned into subgroups defined by their pattern of
platform availability, so that no subject with partially missing platform
data is excluded, and information is borrowed across subgroups through a
Markov random field prior on the variable-selection indicators together
with non-local (product moment) priors on the regression effects. The
methodology was introduced for time-to-event outcomes by Chekouo,
Stingo, Doecke and Do (2017) <doi:10.1111/biom.12587>; this package
additionally supports continuous (Gaussian) and binary (probit) outcomes.
Posterior inference is carried out by a Markov chain Monte Carlo sampler
implemented in C for computational efficiency.
Author: Sinian Zhang [aut],
Jianfeng Wang [aut],
Thierry Chekouo [aut, cre]
Maintainer: Thierry Chekouo <tchekouo@umn.edu>
Diff between IntegMultiReg versions 0.1.0 dated 2026-08-09 and 0.1.1 dated 2026-08-22
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 5 +++++ README.md | 2 +- configure | 18 +++++++++--------- configure.ac | 2 +- inst/CITATION | 6 ++++-- src/main_function_final.c | 32 +++++++++++++++++++++++++++----- src/utils.c | 2 +- src/utils.h | 2 +- 10 files changed, 61 insertions(+), 32 deletions(-)
Title: Equal-Area Hex Grids on the Snyder ISEA Icosahedron
Description: Provides functions to build and use hexagonal discrete global grids
using the Icosahedral Snyder Equal Area ('ISEA') projection (Snyder 1992
<doi:10.3138/27H7-8K88-4882-1752>) and the 'H3' hierarchical hexagonal system
(Uber Technologies). Implements the 'ISEA' discrete global grid system
(Sahr, White and Kimerling 2003 <doi:10.1559/152304003100011090>).
Includes a fast C++ core for 'ISEA' projection and aperture quantization,
an included 'H3' v4.4.1 C library for native 'H3' grid operations, and
'sf'/'terra'-compatible R wrappers for grid generation and coordinate assignment.
Output is compatible with 'dggridR' for interoperability.
Author: Gilles Colling [aut, cre, cph] ,
Uber Technologies, Inc. [ctb, cph] )
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between hexify versions 0.6.5 dated 2026-02-28 and 0.8.2 dated 2026-08-22
hexify-0.6.5/hexify/man/index_to_cell_internal.Rd |only hexify-0.6.5/hexify/tests/testthat-full |only hexify-0.6.5/hexify/tests/testthat/data/truth_hex.csv |only hexify-0.8.2/hexify/DESCRIPTION | 33 hexify-0.8.2/hexify/LICENSE | 4 hexify-0.8.2/hexify/MD5 | 398 +- hexify-0.8.2/hexify/NAMESPACE | 14 hexify-0.8.2/hexify/NEWS.md | 480 ++ hexify-0.8.2/hexify/R/RcppExports.R | 134 hexify-0.8.2/hexify/R/aperture_mixed_hierarchy.R |only hexify-0.8.2/hexify/R/aperture_sequence.R |only hexify-0.8.2/hexify/R/classes.R | 113 hexify-0.8.2/hexify/R/constants.R | 266 + hexify-0.8.2/hexify/R/constructors.R | 150 hexify-0.8.2/hexify/R/crosswalk.R | 35 hexify-0.8.2/hexify/R/dggrid_compat.R | 26 hexify-0.8.2/hexify/R/grid_helpers.R | 322 + hexify-0.8.2/hexify/R/h3_compat.R |only hexify-0.8.2/hexify/R/hex_browse.R |only hexify-0.8.2/hexify/R/hex_compact.R |only hexify-0.8.2/hexify/R/hex_distance.R |only hexify-0.8.2/hexify/R/hex_extract.R |only hexify-0.8.2/hexify/R/hex_summarize.R |only hexify-0.8.2/hexify/R/hex_topology.R |only hexify-0.8.2/hexify/R/hex_zonal.R |only hexify-0.8.2/hexify/R/hexify-package.R | 10 hexify-0.8.2/hexify/R/hexify.R | 52 hexify-0.8.2/hexify/R/hexify_assign.R | 137 hexify-0.8.2/hexify/R/hexify_cell_to_sf.R | 53 hexify-0.8.2/hexify/R/hexify_conversions.R | 136 hexify-0.8.2/hexify/R/hexify_grid.R | 68 hexify-0.8.2/hexify/R/hexify_index.R | 96 hexify-0.8.2/hexify/R/hexify_map.R | 53 hexify-0.8.2/hexify/R/hexify_neighbors.R |only hexify-0.8.2/hexify/R/hexify_stats.R | 60 hexify-0.8.2/hexify/R/plot_globe.R | 78 hexify-0.8.2/hexify/R/plot_methods.R | 52 hexify-0.8.2/hexify/README.md | 41 hexify-0.8.2/hexify/build/vignette.rds |binary hexify-0.8.2/hexify/inst/WORDLIST | 2 hexify-0.8.2/hexify/inst/doc/h3.R | 49 hexify-0.8.2/hexify/inst/doc/h3.Rmd | 76 hexify-0.8.2/hexify/inst/doc/h3.html | 148 hexify-0.8.2/hexify/inst/doc/quickstart.R | 23 hexify-0.8.2/hexify/inst/doc/quickstart.Rmd | 31 hexify-0.8.2/hexify/inst/doc/quickstart.html | 32 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hexify-0.8.2/hexify/man/hexify_cell_to_lonlat.Rd | 40 hexify-0.8.2/hexify/man/hexify_cell_to_plane.Rd | 40 hexify-0.8.2/hexify/man/hexify_cell_to_quad_ij.Rd | 40 hexify-0.8.2/hexify/man/hexify_cell_to_quad_xy.Rd | 40 hexify-0.8.2/hexify/man/hexify_cell_to_sf.Rd | 8 hexify-0.8.2/hexify/man/hexify_compare_indices.Rd | 22 hexify-0.8.2/hexify/man/hexify_compare_resolutions.Rd | 23 hexify-0.8.2/hexify/man/hexify_default_index_type.Rd | 22 hexify-0.8.2/hexify/man/hexify_eff_res_to_area.Rd | 14 hexify-0.8.2/hexify/man/hexify_eff_res_to_resolution.Rd | 14 hexify-0.8.2/hexify/man/hexify_face_centers.Rd | 20 hexify-0.8.2/hexify/man/hexify_forward.Rd | 20 hexify-0.8.2/hexify/man/hexify_forward_to_face.Rd | 20 hexify-0.8.2/hexify/man/hexify_get_children.Rd | 22 hexify-0.8.2/hexify/man/hexify_get_parent.Rd | 22 hexify-0.8.2/hexify/man/hexify_get_precision.Rd | 20 hexify-0.8.2/hexify/man/hexify_get_resolution.Rd | 22 hexify-0.8.2/hexify/man/hexify_grid.Rd | 11 hexify-0.8.2/hexify/man/hexify_grid_cell_to_lonlat.Rd | 40 hexify-0.8.2/hexify/man/hexify_grid_global.Rd | 20 hexify-0.8.2/hexify/man/hexify_grid_rect.Rd | 14 hexify-0.8.2/hexify/man/hexify_grid_to_cell.Rd | 40 hexify-0.8.2/hexify/man/hexify_heatmap.Rd | 9 hexify-0.8.2/hexify/man/hexify_icosa_tri_to_plane.Rd | 40 hexify-0.8.2/hexify/man/hexify_icosa_tri_to_quad_ij.Rd | 40 hexify-0.8.2/hexify/man/hexify_icosa_tri_to_quad_xy.Rd | 40 hexify-0.8.2/hexify/man/hexify_index_to_cell.Rd | 33 hexify-0.8.2/hexify/man/hexify_index_to_lonlat.Rd | 28 hexify-0.8.2/hexify/man/hexify_inverse.Rd | 20 hexify-0.8.2/hexify/man/hexify_is_valid_index_type.Rd | 22 hexify-0.8.2/hexify/man/hexify_lonlat_to_cell.Rd | 40 hexify-0.8.2/hexify/man/hexify_lonlat_to_index.Rd | 30 hexify-0.8.2/hexify/man/hexify_lonlat_to_plane.Rd | 40 hexify-0.8.2/hexify/man/hexify_lonlat_to_quad_ij.Rd | 40 hexify-0.8.2/hexify/man/hexify_projection_stats.Rd | 20 hexify-0.8.2/hexify/man/hexify_quad_ij_to_cell.Rd | 40 hexify-0.8.2/hexify/man/hexify_quad_ij_to_icosa_tri.Rd | 40 hexify-0.8.2/hexify/man/hexify_quad_ij_to_xy.Rd | 40 hexify-0.8.2/hexify/man/hexify_quad_xy_to_cell.Rd | 40 hexify-0.8.2/hexify/man/hexify_quad_xy_to_icosa_tri.Rd | 40 hexify-0.8.2/hexify/man/hexify_resolution_to_eff_res.Rd | 14 hexify-0.8.2/hexify/man/hexify_roundtrip_test.Rd | 40 hexify-0.8.2/hexify/man/hexify_set_precision.Rd | 20 hexify-0.8.2/hexify/man/hexify_set_verbose.Rd | 20 hexify-0.8.2/hexify/man/hexify_which_face.Rd | 20 hexify-0.8.2/hexify/man/hexify_z7_canonical.Rd | 47 hexify-0.8.2/hexify/man/import_h3.Rd |only hexify-0.8.2/hexify/man/is_pentagon.Rd |only hexify-0.8.2/hexify/man/plot-HexData-missing-method.Rd | 8 hexify-0.8.2/hexify/man/plot_world.Rd | 4 hexify-0.8.2/hexify/man/reexports.Rd |only hexify-0.8.2/hexify/man/st_crs.HexGridInfo.Rd |only hexify-0.8.2/hexify/src/RcppExports.cpp | 428 +- hexify-0.8.2/hexify/src/aperture.cpp | 196 - hexify-0.8.2/hexify/src/aperture.h | 3 hexify-0.8.2/hexify/src/aperture_sequence.cpp | 156 hexify-0.8.2/hexify/src/aperture_sequence.h | 36 hexify-0.8.2/hexify/src/cell_index.cpp | 294 - hexify-0.8.2/hexify/src/cell_index.h | 7 hexify-0.8.2/hexify/src/constants.h | 26 hexify-0.8.2/hexify/src/coordinate_transforms.cpp | 390 +- hexify-0.8.2/hexify/src/coordinate_transforms.h | 70 hexify-0.8.2/hexify/src/cube_coordinates.h | 11 hexify-0.8.2/hexify/src/grid_math.h | 477 +- hexify-0.8.2/hexify/src/h3/LICENSE | 402 +- hexify-0.8.2/hexify/src/icosahedron.cpp | 4 hexify-0.8.2/hexify/src/icosahedron.h | 2 hexify-0.8.2/hexify/src/index_z3.cpp | 10 hexify-0.8.2/hexify/src/index_z7.cpp | 143 hexify-0.8.2/hexify/src/index_z7.h | 12 hexify-0.8.2/hexify/src/index_zorder.cpp | 68 hexify-0.8.2/hexify/src/projection_forward.cpp | 7 hexify-0.8.2/hexify/src/rcpp_aperture.cpp | 430 +- hexify-0.8.2/hexify/src/rcpp_cell.cpp | 1674 +++++----- hexify-0.8.2/hexify/src/rcpp_h3.cpp | 281 + hexify-0.8.2/hexify/src/rcpp_index.cpp | 168 - hexify-0.8.2/hexify/src/rcpp_projection.cpp | 2 hexify-0.8.2/hexify/tests/dggrid_test.meta | 18 hexify-0.8.2/hexify/tests/seqnums.txt | 4 hexify-0.8.2/hexify/tests/testthat.R | 24 hexify-0.8.2/hexify/tests/testthat/Rplots.pdf |binary hexify-0.8.2/hexify/tests/testthat/fixtures/test_cache.rds |binary hexify-0.8.2/hexify/tests/testthat/generate_cache.R | 2 hexify-0.8.2/hexify/tests/testthat/test-aperture-3.R | 500 +- hexify-0.8.2/hexify/tests/testthat/test-aperture-4.R | 390 +- hexify-0.8.2/hexify/tests/testthat/test-aperture-7.R | 63 hexify-0.8.2/hexify/tests/testthat/test-aperture-mixed.R | 514 ++- hexify-0.8.2/hexify/tests/testthat/test-assign.R | 70 hexify-0.8.2/hexify/tests/testthat/test-cell-area.R | 5 hexify-0.8.2/hexify/tests/testthat/test-cell-geometry.R |only hexify-0.8.2/hexify/tests/testthat/test-cell-id.R | 55 hexify-0.8.2/hexify/tests/testthat/test-classes.R | 848 ++--- hexify-0.8.2/hexify/tests/testthat/test-coercion.R | 262 - hexify-0.8.2/hexify/tests/testthat/test-compact.R |only hexify-0.8.2/hexify/tests/testthat/test-constants.R | 14 hexify-0.8.2/hexify/tests/testthat/test-constructors.R | 306 - hexify-0.8.2/hexify/tests/testthat/test-conversions.R | 64 hexify-0.8.2/hexify/tests/testthat/test-core.R | 230 - hexify-0.8.2/hexify/tests/testthat/test-dggrid-compat-functions.R | 2 hexify-0.8.2/hexify/tests/testthat/test-dggrid-compat.R | 661 +-- hexify-0.8.2/hexify/tests/testthat/test-edge-cases.R |only hexify-0.8.2/hexify/tests/testthat/test-geometry-validity.R |only hexify-0.8.2/hexify/tests/testthat/test-globe.R |only hexify-0.8.2/hexify/tests/testthat/test-grid-helpers.R | 396 +- hexify-0.8.2/hexify/tests/testthat/test-grid-wrappers.R | 506 +-- hexify-0.8.2/hexify/tests/testthat/test-grid.R | 342 +- hexify-0.8.2/hexify/tests/testthat/test-hexify-function.R | 951 ++--- hexify-0.8.2/hexify/tests/testthat/test-hexify-heatmap.R | 54 hexify-0.8.2/hexify/tests/testthat/test-hierarchical-index.R | 304 + hexify-0.8.2/hexify/tests/testthat/test-icosahedron.R | 51 hexify-0.8.2/hexify/tests/testthat/test-import-h3.R |only hexify-0.8.2/hexify/tests/testthat/test-index-utils.R | 28 hexify-0.8.2/hexify/tests/testthat/test-index-z3.R | 972 ++--- hexify-0.8.2/hexify/tests/testthat/test-index-z7.R | 158 hexify-0.8.2/hexify/tests/testthat/test-index-zorder.R | 736 ++-- hexify-0.8.2/hexify/tests/testthat/test-interactive.R |only hexify-0.8.2/hexify/tests/testthat/test-namespace-hygiene.R |only hexify-0.8.2/hexify/tests/testthat/test-neighbors.R |only hexify-0.8.2/hexify/tests/testthat/test-plot-methods.R | 721 ++-- hexify-0.8.2/hexify/tests/testthat/test-polygons.R | 9 hexify-0.8.2/hexify/tests/testthat/test-projection-forward.R | 2 hexify-0.8.2/hexify/tests/testthat/test-projection-inverse.R | 734 ++-- hexify-0.8.2/hexify/tests/testthat/test-quantizer-nearest.R |only hexify-0.8.2/hexify/tests/testthat/test-radius.R |only hexify-0.8.2/hexify/tests/testthat/test-raster.R |only hexify-0.8.2/hexify/tests/testthat/test-stats.R | 14 hexify-0.8.2/hexify/tests/testthat/test-summarize.R |only hexify-0.8.2/hexify/tests/testthat/test-topology.R |only hexify-0.8.2/hexify/tests/testthat/test-visualization.R | 1574 ++++----- hexify-0.8.2/hexify/vignettes/_common.R |only hexify-0.8.2/hexify/vignettes/h3.Rmd | 76 hexify-0.8.2/hexify/vignettes/quickstart.Rmd | 31 hexify-0.8.2/hexify/vignettes/theory.Rmd |only hexify-0.8.2/hexify/vignettes/visualization.Rmd | 48 hexify-0.8.2/hexify/vignettes/workflows.Rmd | 156 222 files changed, 12989 insertions(+), 10022 deletions(-)
Title: Decode and Validate HEIMS Data from Department of Education,
Australia
Description: Decode elements of the Australian Higher Education Information Management System (HEIMS) data for clarity and performance. HEIMS is the record system of the Department of Education, Australia to record enrolments and completions in Australia's higher education system, as well as a range of relevant information. For more information, including the source of the data dictionary, see <https://web.archive.org/web/20180210074903/http://heimshelp.education.gov.au/sites/heimshelp/dictionary/pages/data-element-dictionary>. That collection has since been superseded by the Tertiary Collection of Student Information, whose data element dictionary is at <https://www.tcsisupport.gov.au/element>.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between heims versions 0.4.0 dated 2018-01-25 and 0.4.3 dated 2026-08-22
DESCRIPTION | 19 +- MD5 | 78 ++++---- NAMESPACE | 96 ++++++---- R/browse_elements.R | 40 ++-- R/data-decoders.R | 186 ++++++++++---------- R/decode_heims.R | 286 ++++++++++++++++---------------- R/dummy_enrol.R | 8 R/first_levels.R | 12 - R/fread_heims.R | 52 ++--- R/heims_data_dict.R | 48 ++--- R/read_heims_fst.R | 161 +++++++++--------- R/relevel_heims.R | 57 +++--- R/rename_heims.R | 154 ++++++++--------- R/utils.R | 222 ++++++++++++------------ R/validate_elements.R | 255 ++++++++++++++-------------- R/zzz.R | 14 - README.md | 6 data/heims_data_dict.rda |binary man/browse_elements.Rd | 40 ++-- man/decode_heims.Rd | 78 ++++---- man/decoders.Rd | 256 +++++++++++++++++----------- man/dummy_enrol.Rd | 30 +-- man/element_decoders.Rd | 62 +++--- man/element_validation.Rd | 82 ++++----- man/first_levels.Rd | 30 +-- man/fread_heims.Rd | 44 ++-- man/heims_data_dict.Rd | 76 ++++---- man/read_heims_fst.Rd | 36 ++-- man/relevel_heims.Rd | 36 ++-- man/utilities.Rd | 166 +++++++++--------- tests/testthat.R | 16 - tests/testthat/test_TableA.R | 12 - tests/testthat/test_browse_elements.R | 14 - tests/testthat/test_decode_heims.R | 285 +++++++++++++++++-------------- tests/testthat/test_dictionary_format.R | 62 +++++- tests/testthat/test_element2name.R | 14 - tests/testthat/test_read_heims_fst.R | 138 +++++++-------- tests/testthat/test_relevel_heims.R | 32 +-- tests/testthat/test_utils.R | 66 +++---- tests/testthat/test_validate_elements.R | 130 +++++++------- 40 files changed, 1782 insertions(+), 1617 deletions(-)
Title: Genomic Random Interval (GRIN)
Description: Implements the Genomic Random Interval (GRIN) framework for
identifying genomic loci affected by genomic lesions more frequently than
expected by chance. Supports multiple lesion classes, lesion constellation
analysis, exon-level target-size modeling, genomic lesion visualization,
and gene-level association analyses linking genomic lesions or gene
expression with binary and time-to-event clinical outcomes. Includes tools
for retrieving versioned GRCh38 Ensembl gene, exon, and regulatory-element
annotations. The statistical framework is described in Pounds et al. (2013)
<doi:10.1093/bioinformatics/btt372>.
Author: Abdelrahman Elsayed [aut, cre, cph] ,
Xueyuan Cao [aut],
Lakshmi Anuhya Patibandla [aut],
Stanley Pounds [aut, cph]
Maintainer: Abdelrahman Elsayed <aelsayed@stjude.org>
Diff between GRIN2 versions 2.0.0 dated 2025-06-17 and 2.1.0 dated 2026-08-22
DESCRIPTION | 64 MD5 | 203 - NAMESPACE | 24 NEWS.md | 31 R/KW.hit.express.R | 161 + R/alex.boxplots.R | 132 - R/alex.pathway.R | 188 + R/alex.prep.lsn.expr.R | 204 + R/alex.waterfall.plot.R | 183 + R/alex.waterfall.prep.R | 136 - R/clin_data.R | 43 R/compute.gw.coordinates.R | 91 R/count.hits.R | 194 + R/default.grin.colors.R | 38 R/define.grps.R | 6 R/dist.lsn.R | 8 R/example_exon_annotation.R |only R/expr_data.R | 16 R/find.gene.lsn.overlaps.R | 183 + R/genomewide.log10q.plot.R | 265 +- R/genomewide.lsn.plot.R | 257 +- R/get.chrom.length.R | 49 R/get.ensembl.annotation.R | 356 ++ R/globals.R |only R/grin.assoc.expr.outcome.R |only R/grin.assoc.lsn.outcome.R | 1016 +++++--- R/grin.barplt.R | 196 + R/grin.logRank.R |only R/grin.lsn.boundaries.R | 163 - R/grin.oncoprint.mtx.R | 347 ++ R/grin.results.R |only R/grin.stats.R | 305 +- R/grin.stats.lsn.plot.R | 537 ++-- R/grin2.annotation.resources.R |only R/grin2.retrieve.annotation.resource.R |only R/hg38_chrom_size.R | 16 R/hg38_cytoband.R | 27 R/hg38_exon_chrom_size.R |only R/hg38_gene_annotation.R | 40 R/lesion_data.R | 34 R/lsn.transcripts.plot.R | 1891 +++++++++------ R/onco.print.alter.func.R | 75 R/onco.print.props.R | 159 + R/oncoprint.legend.R | 31 R/one.KW.pvalue.R | 1 R/order.index.gene.data.R | 71 R/order.index.lsn.data.R | 73 R/p.order.R | 49 R/pathways.R | 10 R/pbc.R | 56 R/pc06.fdr.R | 10 R/prep.binary.lsn.mtx.R | 84 R/prep.gene.lsn.data.R | 500 +++- R/prep.lsn.type.matrix.R | 99 R/prob.hits.R | 462 ++- R/row.prob.subj.hit.R | 60 R/rpbc.R | 34 R/stat.by.group.R | 3 R/top.alex.waterfall.plots.R | 134 - R/write.grin.xlsx.R | 569 +++- build/partial.rdb |only build/vignette.rds |binary data/example_exon_annotation.rda |only data/grin.results.rda |only data/hg38_exon_chrom_size.rda |only inst/doc/GRIN2.R | 638 +++-- inst/doc/GRIN2.Rmd | 947 +++++-- inst/doc/GRIN2.html | 4014 ++++++++++++++++----------------- man/KW.hit.express.Rd | 106 man/alex.boxplots.Rd | 84 man/alex.pathway.Rd | 118 man/alex.prep.lsn.expr.Rd | 79 man/alex.waterfall.plot.Rd | 84 man/alex.waterfall.prep.Rd | 87 man/clin_data.Rd | 43 man/compute.gw.coordinates.Rd | 74 man/count.hits.Rd | 115 man/default.grin.colors.Rd | 25 man/example_exon_annotation.Rd |only man/expr_data.Rd | 16 man/find.gene.lsn.overlaps.Rd | 105 man/genomewide.log10q.plot.Rd | 83 man/genomewide.lsn.plot.Rd | 100 man/get.chrom.length.Rd | 23 man/get.ensembl.annotation.Rd | 168 + man/grin.assoc.expr.outcome.Rd |only man/grin.assoc.lsn.outcome.Rd | 199 + man/grin.barplt.Rd | 53 man/grin.logRank.Rd |only man/grin.lsn.boundaries.Rd | 71 man/grin.oncoprint.mtx.Rd | 95 man/grin.results.Rd |only man/grin.stats.Rd | 247 +- man/grin.stats.lsn.plot.Rd | 85 man/hg38_chrom_size.Rd | 14 man/hg38_cytoband.Rd | 24 man/hg38_exon_chrom_size.Rd |only man/hg38_gene_annotation.Rd | 40 man/lesion_data.Rd | 33 man/lsn.transcripts.plot.Rd | 272 +- man/onco.print.props.Rd | 80 man/order.index.gene.data.Rd | 50 man/order.index.lsn.data.Rd | 54 man/pathways.Rd | 8 man/prep.binary.lsn.mtx.Rd | 66 man/prep.gene.lsn.data.Rd | 166 + man/prep.lsn.type.matrix.Rd | 67 man/prob.hits.Rd | 154 + man/top.alex.waterfall.plots.Rd | 91 man/write.grin.xlsx.Rd | 85 vignettes/GRIN2.Rmd | 947 +++++-- 111 files changed, 13087 insertions(+), 6607 deletions(-)
Title: Gradient Projection Factor Rotation
Description: Gradient projection algorithms for orthogonal and oblique rotation
of factor loadings matrices in factor analysis. Implements a comprehensive
set of rotation criteria including quartimax, quartimin, oblimin, geomin,
simplimax, the Crawford-Ferguson family, and target rotation, among others.
Supports multiple random starts. For details see Bernaards and Jennrich (2005)
<doi:10.1177/0013164404272507>.
Author: Coen Bernaards [aut, cre],
Paul Gilbert [aut],
Robert Jennrich [aut]
Maintainer: Coen Bernaards <cab.gparotation@gmail.com>
Diff between GPArotation versions 2026.8-1 dated 2026-08-03 and 2026.8-2 dated 2026-08-22
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 2 +- NEWS | 4 ++++ R/printsummary.R | 4 ++-- R/rotations.R | 46 ++++++++++++++++++++++++++++++++++++++++++++++ R/trajectoryPlot.R | 6 +++--- inst/doc/GPA1guide.pdf |binary inst/doc/GPA2local.pdf |binary inst/doc/GPA3bifactor.pdf |binary inst/doc/GPA4fitstats.pdf |binary man/00.GPArotation.Rd | 1 + man/GPA.Rd | 4 +++- man/GriffithMulaik.Rd | 2 ++ man/rotations.Rd | 25 +++++++++++++++++++++++-- tests/rotations.R | 4 ++-- 16 files changed, 105 insertions(+), 29 deletions(-)
Title: Functional Machine Learning Framework
Description: A compact and explicit machine learning framework for
supervised learning, resampling-based evaluation, hyperparameter
tuning, learner comparison, interpretation, and plug-in
g-computation. The package uses standard formulas for model
specification and provides stable S3 interfaces for fitting,
evaluation, tuning, interpretation, and causal estimation across a
learner registry with multiple backend engines. Implemented
interpretation methods build on established approaches such as
permutation-based variable importance, partial dependence,
individual conditional expectation, accumulated local effects, SHAP,
and LIME; see Friedman (2001) <doi:10.1214/aos/1013203451>,
Goldstein et al. (2015) <doi:10.1080/10618600.2014.907095>, Apley
and Zhu (2020) <doi:10.1111/rssb.12377>, Lundberg and Lee (2017)
<doi:10.48550/arXiv.1705.07874>, and Ribeiro et al. (2016)
<doi:10.48550/arXiv.1602.04938>. The framework is intentionally
opinionated: preprocessing is expected to [...truncated...]
Author: Imad El Badisy [aut, cre]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
Diff between funcml versions 0.7.1 dated 2026-04-21 and 0.9.0 dated 2026-08-22
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Title: Ecological Inference via Information Theory
Description: Estimates RxC transfer matrices from aggregated marginal data using
a two-stage (GME+IPF; Generalized Maximum Entropy and Iterative Proportional Fitting)
information-theoretic approach within a two-step
(global+local) estimation procedure. The resulting matrices are consistent
with observed row and column marginals across collections of subtables
(e.g. precincts, polling stations, or districts).
References:
Golan, A., Judge, G., & Miller, D. (1996). Maximum Entropy Econometrics: Robust Estimation with Limited Data. Wiley.
Judge, G., Miller, D.J., & Cho, W.K.T. (2004). "An information theoretic approach to ecological estimation and inference". In G. King, O. Rosen, & M. A. Tanner (Eds.), Ecological Inference: New Methodological Strategies (pp. 162–187). Cambridge University Press.
Mittelhammer, R., Judge, G., & Miller, D. (2000). Econometric Foundations. Cambridge University Press.
Pavia, J.M. (2023) <doi:10.1007/s43545-023-00658-y>
Acknowledgements: The author wis [...truncated...]
Author: Jose M. Pavia [aut, cre]
Maintainer: Jose M. Pavia <jose.m.pavia@uv.es>
Diff between eiIT versions 0.0.1-1 dated 2026-06-01 and 0.0.2-1 dated 2026-08-22
DESCRIPTION | 16 +++++++++------- MD5 | 13 ++++++++----- NEWS.md |only R/auxiliary_functions.R | 22 ++++++++++++---------- R/ei_it.R | 41 ++++++++++++++++++++++------------------- build/partial.rdb |binary man/ei_it.Rd | 35 +++++++++++++++++++---------------- tests |only 8 files changed, 70 insertions(+), 57 deletions(-)
Title: Packages and Functions for 'CourseKata' Courses
Description: Easily install and load all packages and functions used in
'CourseKata' courses. Aid teaching with helper functions and augment
generic functions to provide cohesion between the network of packages.
Learn more about 'CourseKata' at <https://www.coursekata.org>.
Author: Adam Blake [cre, aut] ,
Ji Son [aut] ,
Jim Stigler [aut] ,
CourseKata [cph]
Maintainer: Adam Blake <adam@coursekata.org>
This is a re-admission after prior archival of version 0.19.2 dated 2026-03-10
Diff between coursekata versions 0.19.2 dated 2026-03-10 and 0.20.1 dated 2026-08-22
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Title: Color Palettes for Soccer, MLB, NBA, WNBA, NHL, and NFL Teams
Description: Current-season color palettes for soccer clubs in the English Premier
League ('EPL'), 'LaLiga', 'Serie A', the 'Bundesliga', 'Ligue 1' and Major League
Soccer ('MLS'), and for Major League Baseball ('MLB'), National Basketball
Association ('NBA'), Women's National Basketball Association ('WNBA'), National
Hockey League ('NHL') and National Football League ('NFL') teams. Palettes are
returned as named character vectors of hex colors, and as 'ggplot2' colour and
fill scales. The palettes shipped in earlier versions of the package remain
available so that older figures stay reproducible.
Author: Charles Crabtree [aut, cre]
Maintainer: Charles Crabtree <charles.crabtree@monash.edu>
Diff between colorr versions 1.0.0 dated 2017-02-20 and 1.1.0 dated 2026-08-22
DESCRIPTION | 30 ++++-- LICENSE | 2 MD5 | 55 +++++++++--- NAMESPACE | 34 ++++++- R/colorr-package.R |only R/colorr-teams.R |only R/colorr-utils.R |only R/eplcolors.r | 157 ++++++------------------------------ R/leagues.R |only R/mlbcolors.r | 179 ++++++----------------------------------- R/nbacolors.r | 205 ++++++----------------------------------------- R/nflcolors.r | 215 ++++++-------------------------------------------- R/nhlcolors.r | 200 ++++++---------------------------------------- R/palettes-current.R |only R/palettes-legacy.R |only R/scales.R |only R/soccercolors.r |only R/wnbacolors.r |only README.md | 148 ++++++++++++++++++++++++++++++---- man/colorr-package.Rd |only man/colorr.colors.Rd |only man/colorr.leagues.Rd |only man/colorr.pal.Rd |only man/colorr.teams.Rd |only man/epl-scales.Rd |only man/epl.colors.Rd | 42 ++++++--- man/mlb-scales.Rd |only man/mlb.colors.Rd | 41 ++++++--- man/nba-scales.Rd |only man/nba.colors.Rd | 39 ++++++--- man/nfl-scales.Rd |only man/nfl.colors.Rd | 43 ++++++---- man/nhl-scales.Rd |only man/nhl.colors.Rd | 42 ++++++--- man/soccer-scales.Rd |only man/soccer.colors.Rd |only man/wnba-scales.Rd |only man/wnba.colors.Rd |only tests |only 39 files changed, 498 insertions(+), 934 deletions(-)
Title: Capital Asset Pricing for Nature
Description: Implements the natural capital asset pricing for nature (CAPN) approach, using a collocation or iteration method and associated functions for dynamic programs. Development of this package was supported by the Knobloch Family Foundation and Lenfest Ocean Program Contract ID 00029728.
Author: Seong D. Yun [aut, cre],
Eli P. Fenichel [aut, ctb],
Joshua K. Abbott [aut, ctb]
Maintainer: Seong D. Yun <yunsd2004@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2017-06-05
Diff between capn versions 1.0.0 dated 2017-06-05 and 2.0.0 dated 2026-08-22
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Title: Bayesian Estimation of Structural Vector Autoregressive Models
Description: Provides fast and efficient procedures for Bayesian analysis of Structural Vector Autoregressions. This package estimates a wide range of models, including homo-, heteroskedastic, and non-normal specifications. Structural models can be identified by adjustable exclusion restrictions, time-varying volatility, or non-normality, and include exclusion restrictions on autoregressive parameters. They all include a flexible three-level equation-specific local-global hierarchical prior distribution for the estimated level of shrinkage for autoregressive and structural parameters. Additionally, the package facilitates predictive and structural analyses such as impulse responses, forecast error variance and historical decompositions, forecasting, verification of heteroskedasticity, non-normality, and hypotheses on autoregressive parameters, as well as analyses of structural shocks, volatilities, and fitted values. Beautiful plots, informative summary functions, and extensive documentation includ [...truncated...]
Author: Tomasz Wozniak [aut, cre] ,
Fei Shang [ctb] , introduced major code
corrections and improvements),
Helmut Luetkepohl [ctb] ),
Luis Uzeda [ctb] ),
Xiaolei Wang [ctb] ,
Bruno Cavalcante [ctb]
Maintainer: Tomasz Wozniak <wozniak.tom@pm.me>
Diff between bsvars versions 3.2 dated 2024-10-24 and 4.0 dated 2026-08-22
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bsvars-4.0/bsvars/R/estimate.BSVARMIX.R | 69 bsvars-4.0/bsvars/R/estimate.BSVARMSH.R | 65 bsvars-4.0/bsvars/R/estimate.BSVARSV.R | 78 bsvars-4.0/bsvars/R/estimate.BSVART.R | 74 bsvars-4.0/bsvars/R/estimate.R | 7 bsvars-4.0/bsvars/R/forecast.R | 914 ++++++---- bsvars-4.0/bsvars/R/normalise.R |only bsvars-4.0/bsvars/R/plot.R | 171 - bsvars-4.0/bsvars/R/specify_bsvar.R | 148 + bsvars-4.0/bsvars/R/specify_bsvar_exh.R |only bsvars-4.0/bsvars/R/specify_bsvar_hmsh.R |only bsvars-4.0/bsvars/R/specify_bsvar_mix.R | 58 bsvars-4.0/bsvars/R/specify_bsvar_msh.R | 89 bsvars-4.0/bsvars/R/specify_bsvar_sv.R | 88 bsvars-4.0/bsvars/R/specify_bsvar_t.R | 127 - bsvars-4.0/bsvars/R/summary.R | 817 ++++---- bsvars-4.0/bsvars/R/us_fiscal_cond_forecasts.R | 5 bsvars-4.0/bsvars/R/us_fiscal_ex.R | 4 bsvars-4.0/bsvars/R/us_fiscal_ex_forecasts.R | 5 bsvars-4.0/bsvars/R/us_fiscal_lsuw.R | 10 bsvars-4.0/bsvars/R/us_fiscal_sww.R |only bsvars-4.0/bsvars/R/verify.R | 875 ++++++++- bsvars-4.0/bsvars/README.md | 104 - bsvars-4.0/bsvars/build/partial.rdb |binary bsvars-4.0/bsvars/build/vignette.rds |binary bsvars-4.0/bsvars/data/us_fiscal_cond_forecasts.rda |binary bsvars-4.0/bsvars/data/us_fiscal_ex.rda |binary bsvars-4.0/bsvars/data/us_fiscal_ex_forecasts.rda |binary bsvars-4.0/bsvars/data/us_fiscal_lsuw.rda |binary bsvars-4.0/bsvars/data/us_fiscal_sww.rda |only bsvars-4.0/bsvars/inst/CITATION | 23 bsvars-4.0/bsvars/inst/doc/bsvars_vignette.pdf |binary bsvars-4.0/bsvars/inst/include/bsvars_RcppExports.h | 252 ++ bsvars-4.0/bsvars/inst/tinytest/test_compute_conditional_sd.R | 73 bsvars-4.0/bsvars/inst/tinytest/test_compute_impulse_responses.R | 71 bsvars-4.0/bsvars/inst/tinytest/test_compute_regime_probabilities.R | 61 bsvars-4.0/bsvars/inst/tinytest/test_compute_variance_decomposition.R | 61 bsvars-4.0/bsvars/inst/tinytest/test_estimate_bsvar.R | 12 bsvars-4.0/bsvars/inst/tinytest/test_estimate_bsvar_exh.R |only bsvars-4.0/bsvars/inst/tinytest/test_estimate_bsvar_hmsh.R |only bsvars-4.0/bsvars/inst/tinytest/test_estimate_bsvar_mix.R | 12 bsvars-4.0/bsvars/inst/tinytest/test_estimate_bsvar_msh.R | 12 bsvars-4.0/bsvars/inst/tinytest/test_estimate_bsvar_sv.R | 12 bsvars-4.0/bsvars/inst/tinytest/test_estimate_bsvar_t.R | 12 bsvars-4.0/bsvars/inst/tinytest/test_exogenous.R | 3 bsvars-4.0/bsvars/inst/tinytest/test_forecast.R | 145 + bsvars-4.0/bsvars/inst/tinytest/test_hmsh_thinning.R |only bsvars-4.0/bsvars/inst/tinytest/test_msh_kernels.R |only bsvars-4.0/bsvars/inst/tinytest/test_normalise.R |only bsvars-4.0/bsvars/inst/tinytest/test_verify_autoregression.R | 18 bsvars-4.0/bsvars/inst/tinytest/test_verify_identification.R | 29 bsvars-4.0/bsvars/inst/tinytest/test_verify_volatility.R | 30 bsvars-4.0/bsvars/man/bsvars-package.Rd | 185 +- bsvars-4.0/bsvars/man/compute_conditional_sd.PosteriorBSVAR.Rd | 26 bsvars-4.0/bsvars/man/compute_conditional_sd.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/compute_conditional_sd.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/compute_conditional_sd.PosteriorBSVARMIX.Rd | 26 bsvars-4.0/bsvars/man/compute_conditional_sd.PosteriorBSVARMSH.Rd | 26 bsvars-4.0/bsvars/man/compute_conditional_sd.PosteriorBSVARSV.Rd | 26 bsvars-4.0/bsvars/man/compute_conditional_sd.PosteriorBSVART.Rd | 30 bsvars-4.0/bsvars/man/compute_conditional_sd.Rd | 28 bsvars-4.0/bsvars/man/compute_fitted_values.PosteriorBSVAR.Rd | 18 bsvars-4.0/bsvars/man/compute_fitted_values.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/compute_fitted_values.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/compute_fitted_values.PosteriorBSVARMIX.Rd | 22 bsvars-4.0/bsvars/man/compute_fitted_values.PosteriorBSVARMSH.Rd | 22 bsvars-4.0/bsvars/man/compute_fitted_values.PosteriorBSVARSV.Rd | 22 bsvars-4.0/bsvars/man/compute_fitted_values.PosteriorBSVART.Rd | 22 bsvars-4.0/bsvars/man/compute_fitted_values.Rd | 20 bsvars-4.0/bsvars/man/compute_historical_decompositions.PosteriorBSVAR.Rd | 24 bsvars-4.0/bsvars/man/compute_historical_decompositions.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/compute_historical_decompositions.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/compute_historical_decompositions.PosteriorBSVARMIX.Rd | 24 bsvars-4.0/bsvars/man/compute_historical_decompositions.PosteriorBSVARMSH.Rd | 24 bsvars-4.0/bsvars/man/compute_historical_decompositions.PosteriorBSVARSV.Rd | 12 bsvars-4.0/bsvars/man/compute_historical_decompositions.PosteriorBSVART.Rd | 24 bsvars-4.0/bsvars/man/compute_historical_decompositions.Rd | 28 bsvars-4.0/bsvars/man/compute_impulse_responses.PosteriorBSVAR.Rd | 22 bsvars-4.0/bsvars/man/compute_impulse_responses.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/compute_impulse_responses.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/compute_impulse_responses.PosteriorBSVARMIX.Rd | 24 bsvars-4.0/bsvars/man/compute_impulse_responses.PosteriorBSVARMSH.Rd | 24 bsvars-4.0/bsvars/man/compute_impulse_responses.PosteriorBSVARSV.Rd | 24 bsvars-4.0/bsvars/man/compute_impulse_responses.PosteriorBSVART.Rd | 24 bsvars-4.0/bsvars/man/compute_impulse_responses.Rd | 24 bsvars-4.0/bsvars/man/compute_regime_probabilities.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/compute_regime_probabilities.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/compute_regime_probabilities.PosteriorBSVARMIX.Rd | 18 bsvars-4.0/bsvars/man/compute_regime_probabilities.PosteriorBSVARMSH.Rd | 22 bsvars-4.0/bsvars/man/compute_regime_probabilities.Rd | 22 bsvars-4.0/bsvars/man/compute_structural_shocks.PosteriorBSVAR.Rd | 20 bsvars-4.0/bsvars/man/compute_structural_shocks.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/compute_structural_shocks.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/compute_structural_shocks.PosteriorBSVARMIX.Rd | 20 bsvars-4.0/bsvars/man/compute_structural_shocks.PosteriorBSVARMSH.Rd | 20 bsvars-4.0/bsvars/man/compute_structural_shocks.PosteriorBSVARSV.Rd | 20 bsvars-4.0/bsvars/man/compute_structural_shocks.PosteriorBSVART.Rd | 20 bsvars-4.0/bsvars/man/compute_structural_shocks.Rd | 22 bsvars-4.0/bsvars/man/compute_variance_decompositions.PosteriorBSVAR.Rd | 20 bsvars-4.0/bsvars/man/compute_variance_decompositions.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/compute_variance_decompositions.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/compute_variance_decompositions.PosteriorBSVARMIX.Rd | 20 bsvars-4.0/bsvars/man/compute_variance_decompositions.PosteriorBSVARMSH.Rd | 20 bsvars-4.0/bsvars/man/compute_variance_decompositions.PosteriorBSVARSV.Rd | 20 bsvars-4.0/bsvars/man/compute_variance_decompositions.PosteriorBSVART.Rd | 20 bsvars-4.0/bsvars/man/compute_variance_decompositions.Rd | 22 bsvars-4.0/bsvars/man/estimate.BSVAR.Rd | 28 bsvars-4.0/bsvars/man/estimate.BSVAREXH.Rd |only bsvars-4.0/bsvars/man/estimate.BSVARHMSH.Rd |only bsvars-4.0/bsvars/man/estimate.BSVARMIX.Rd | 26 bsvars-4.0/bsvars/man/estimate.BSVARMSH.Rd | 26 bsvars-4.0/bsvars/man/estimate.BSVARSV.Rd | 35 bsvars-4.0/bsvars/man/estimate.BSVART.Rd | 38 bsvars-4.0/bsvars/man/estimate.PosteriorBSVAR.Rd | 29 bsvars-4.0/bsvars/man/estimate.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/estimate.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/estimate.PosteriorBSVARMIX.Rd | 30 bsvars-4.0/bsvars/man/estimate.PosteriorBSVARMSH.Rd | 26 bsvars-4.0/bsvars/man/estimate.PosteriorBSVARSV.Rd | 35 bsvars-4.0/bsvars/man/estimate.PosteriorBSVART.Rd | 38 bsvars-4.0/bsvars/man/estimate.Rd | 7 bsvars-4.0/bsvars/man/forecast.PosteriorBSVAR.Rd | 53 bsvars-4.0/bsvars/man/forecast.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/forecast.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/forecast.PosteriorBSVARMIX.Rd | 47 bsvars-4.0/bsvars/man/forecast.PosteriorBSVARMSH.Rd | 47 bsvars-4.0/bsvars/man/forecast.PosteriorBSVARSV.Rd | 43 bsvars-4.0/bsvars/man/forecast.PosteriorBSVART.Rd | 49 bsvars-4.0/bsvars/man/normalise.PosteriorBSVAR.Rd |only bsvars-4.0/bsvars/man/normalise.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/normalise.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/normalise.PosteriorBSVARMIX.Rd |only bsvars-4.0/bsvars/man/normalise.PosteriorBSVARMSH.Rd |only bsvars-4.0/bsvars/man/normalise.PosteriorBSVARSV.Rd |only bsvars-4.0/bsvars/man/normalise.PosteriorBSVART.Rd |only bsvars-4.0/bsvars/man/normalise.Rd |only bsvars-4.0/bsvars/man/plot.Forecasts.Rd | 11 bsvars-4.0/bsvars/man/plot.PosteriorFEVD.Rd | 11 bsvars-4.0/bsvars/man/plot.PosteriorFitted.Rd | 11 bsvars-4.0/bsvars/man/plot.PosteriorHD.Rd | 11 bsvars-4.0/bsvars/man/plot.PosteriorIR.Rd | 15 bsvars-4.0/bsvars/man/plot.PosteriorRegimePr.Rd | 11 bsvars-4.0/bsvars/man/plot.PosteriorShocks.Rd | 14 bsvars-4.0/bsvars/man/plot.PosteriorSigma.Rd | 3 bsvars-4.0/bsvars/man/plot_ribbon.Rd | 3 bsvars-4.0/bsvars/man/reexports.Rd |only bsvars-4.0/bsvars/man/specify_bsvar.Rd | 256 +- bsvars-4.0/bsvars/man/specify_bsvar_exh.Rd |only bsvars-4.0/bsvars/man/specify_bsvar_hmsh.Rd |only bsvars-4.0/bsvars/man/specify_bsvar_mix.Rd | 137 - bsvars-4.0/bsvars/man/specify_bsvar_msh.Rd | 260 +- bsvars-4.0/bsvars/man/specify_bsvar_sv.Rd | 257 +- bsvars-4.0/bsvars/man/specify_bsvar_t.Rd | 131 - bsvars-4.0/bsvars/man/specify_data_matrices.Rd | 121 - bsvars-4.0/bsvars/man/specify_forecasts.Rd |only bsvars-4.0/bsvars/man/specify_identification_bsvars.Rd | 183 +- bsvars-4.0/bsvars/man/specify_posterior_bsvar.Rd | 227 +- bsvars-4.0/bsvars/man/specify_posterior_bsvar_exh.Rd |only bsvars-4.0/bsvars/man/specify_posterior_bsvar_hmsh.Rd |only bsvars-4.0/bsvars/man/specify_posterior_bsvar_mix.Rd | 227 +- bsvars-4.0/bsvars/man/specify_posterior_bsvar_msh.Rd | 227 +- bsvars-4.0/bsvars/man/specify_posterior_bsvar_sv.Rd | 227 +- bsvars-4.0/bsvars/man/specify_posterior_bsvar_t.Rd | 227 +- bsvars-4.0/bsvars/man/specify_prior_bsvar.Rd | 159 - bsvars-4.0/bsvars/man/specify_prior_bsvar_exh.Rd |only bsvars-4.0/bsvars/man/specify_prior_bsvar_mix.Rd | 82 bsvars-4.0/bsvars/man/specify_prior_bsvar_msh.Rd | 153 - bsvars-4.0/bsvars/man/specify_prior_bsvar_sv.Rd | 148 - bsvars-4.0/bsvars/man/specify_prior_bsvar_t.Rd | 76 bsvars-4.0/bsvars/man/specify_starting_values_bsvar.Rd | 224 +- bsvars-4.0/bsvars/man/specify_starting_values_bsvar_exh.Rd |only bsvars-4.0/bsvars/man/specify_starting_values_bsvar_hmsh.Rd |only bsvars-4.0/bsvars/man/specify_starting_values_bsvar_mix.Rd | 135 - bsvars-4.0/bsvars/man/specify_starting_values_bsvar_msh.Rd | 219 +- bsvars-4.0/bsvars/man/specify_starting_values_bsvar_sv.Rd | 219 +- bsvars-4.0/bsvars/man/summary.Forecasts.Rd | 20 bsvars-4.0/bsvars/man/summary.PosteriorBSVAR.Rd | 26 bsvars-4.0/bsvars/man/summary.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/summary.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/summary.PosteriorBSVARMIX.Rd | 23 bsvars-4.0/bsvars/man/summary.PosteriorBSVARMSH.Rd | 24 bsvars-4.0/bsvars/man/summary.PosteriorBSVARSV.Rd | 24 bsvars-4.0/bsvars/man/summary.PosteriorBSVART.Rd | 23 bsvars-4.0/bsvars/man/summary.PosteriorFEVD.Rd | 20 bsvars-4.0/bsvars/man/summary.PosteriorFitted.Rd | 20 bsvars-4.0/bsvars/man/summary.PosteriorHD.Rd | 20 bsvars-4.0/bsvars/man/summary.PosteriorIR.Rd | 19 bsvars-4.0/bsvars/man/summary.PosteriorRegimePr.Rd | 20 bsvars-4.0/bsvars/man/summary.PosteriorShocks.Rd | 19 bsvars-4.0/bsvars/man/summary.PosteriorSigma.Rd | 11 bsvars-4.0/bsvars/man/summary.SDDRautoregression.Rd | 8 bsvars-4.0/bsvars/man/summary.SDDRidMIX.Rd | 8 bsvars-4.0/bsvars/man/summary.SDDRidMSH.Rd | 8 bsvars-4.0/bsvars/man/summary.SDDRidSV.Rd | 8 bsvars-4.0/bsvars/man/summary.SDDRidT.Rd | 8 bsvars-4.0/bsvars/man/summary.SDDRvolatility.Rd | 8 bsvars-4.0/bsvars/man/us_fiscal_cond_forecasts.Rd | 5 bsvars-4.0/bsvars/man/us_fiscal_ex.Rd | 4 bsvars-4.0/bsvars/man/us_fiscal_ex_forecasts.Rd | 5 bsvars-4.0/bsvars/man/us_fiscal_lsuw.Rd | 10 bsvars-4.0/bsvars/man/us_fiscal_sww.Rd |only bsvars-4.0/bsvars/man/verify_autoregression.PosteriorBSVAR.Rd | 7 bsvars-4.0/bsvars/man/verify_autoregression.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/verify_autoregression.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/verify_autoregression.PosteriorBSVARMIX.Rd | 7 bsvars-4.0/bsvars/man/verify_autoregression.PosteriorBSVARMSH.Rd | 6 bsvars-4.0/bsvars/man/verify_autoregression.PosteriorBSVARSV.Rd | 7 bsvars-4.0/bsvars/man/verify_autoregression.PosteriorBSVART.Rd | 6 bsvars-4.0/bsvars/man/verify_autoregression.Rd | 7 bsvars-4.0/bsvars/man/verify_identification.PosteriorBSVAR.Rd | 7 bsvars-4.0/bsvars/man/verify_identification.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/verify_identification.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/verify_identification.PosteriorBSVARMIX.Rd | 7 bsvars-4.0/bsvars/man/verify_identification.PosteriorBSVARMSH.Rd | 7 bsvars-4.0/bsvars/man/verify_identification.PosteriorBSVARSV.Rd | 7 bsvars-4.0/bsvars/man/verify_identification.PosteriorBSVART.Rd | 7 bsvars-4.0/bsvars/man/verify_identification.Rd | 7 bsvars-4.0/bsvars/man/verify_normality.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/verify_normality.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/verify_normality.PosteriorBSVARMIX.Rd |only bsvars-4.0/bsvars/man/verify_normality.PosteriorBSVARMSH.Rd |only bsvars-4.0/bsvars/man/verify_normality.PosteriorBSVARSV.Rd |only bsvars-4.0/bsvars/man/verify_normality.Rd |only bsvars-4.0/bsvars/man/verify_volatility.PosteriorBSVAR.Rd | 7 bsvars-4.0/bsvars/man/verify_volatility.PosteriorBSVAREXH.Rd |only bsvars-4.0/bsvars/man/verify_volatility.PosteriorBSVARHMSH.Rd |only bsvars-4.0/bsvars/man/verify_volatility.PosteriorBSVARMIX.Rd | 7 bsvars-4.0/bsvars/man/verify_volatility.PosteriorBSVARMSH.Rd | 7 bsvars-4.0/bsvars/man/verify_volatility.PosteriorBSVARSV.Rd | 7 bsvars-4.0/bsvars/man/verify_volatility.Rd | 7 bsvars-4.0/bsvars/src/Makevars | 4 bsvars-4.0/bsvars/src/Makevars.win | 4 bsvars-4.0/bsvars/src/RcppExports.cpp | 605 ++++-- bsvars-4.0/bsvars/src/bsvar.cpp | 63 bsvars-4.0/bsvars/src/bsvar.h | 2 bsvars-4.0/bsvars/src/bsvarTOOLs.cpp | 74 bsvars-4.0/bsvars/src/bsvarTOOLs.h | 17 bsvars-4.0/bsvars/src/bsvar_exh.cpp |only bsvars-4.0/bsvars/src/bsvar_exh.h |only bsvars-4.0/bsvars/src/bsvar_hmsh.cpp |only bsvars-4.0/bsvars/src/bsvar_hmsh.h |only bsvars-4.0/bsvars/src/bsvar_msh.cpp | 94 - bsvars-4.0/bsvars/src/bsvar_msh.h | 4 bsvars-4.0/bsvars/src/bsvar_sv.cpp | 83 bsvars-4.0/bsvars/src/bsvar_sv.h | 2 bsvars-4.0/bsvars/src/bsvar_t.cpp | 64 bsvars-4.0/bsvars/src/bsvar_t.h | 1 bsvars-4.0/bsvars/src/forecast.cpp | 112 + bsvars-4.0/bsvars/src/forecast.h | 14 bsvars-4.0/bsvars/src/msh.cpp | 180 + bsvars-4.0/bsvars/src/msh.h | 23 bsvars-4.0/bsvars/src/normalisation.cpp | 4 bsvars-4.0/bsvars/src/normalisation.h | 6 bsvars-4.0/bsvars/src/sample_ABhyper.cpp | 44 bsvars-4.0/bsvars/src/sample_ABhyper.h | 27 bsvars-4.0/bsvars/src/sample_t.cpp | 88 bsvars-4.0/bsvars/src/sample_t.h | 19 bsvars-4.0/bsvars/src/sv.cpp | 2 bsvars-4.0/bsvars/src/verify.cpp | 126 + bsvars-4.0/bsvars/src/verify.h | 8 bsvars-4.0/bsvars/vignettes/pdf/bsvars.pdf |binary 281 files changed, 8844 insertions(+), 6102 deletions(-)
Title: Automatic Generation of Interactive Visualizations for
Statistical Results
Description: Functionalities to automatically generate interactive visualizations for
statistical results supported by 'ggfortify', such as time series, PCA,
clustering and survival analysis, with 'plotly.js' <https://plotly.com/> and
'ggplot2' style. The generated visualizations can also be easily extended
using 'ggplot2' and 'plotly' syntax while staying interactive.
Author: Yuan Tang [aut, cre]
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
This is a re-admission after prior archival of version 0.1.4 dated 2021-04-18
Diff between autoplotly versions 0.1.4 dated 2021-04-18 and 0.1.7 dated 2026-08-22
DESCRIPTION | 8 - MD5 | 24 +-- NAMESPACE | 1 NEWS.md | 21 ++ R/autoplotly.R | 96 ++++++++++++ R/generic_methods.R | 27 +++ build/vignette.rds |binary inst/CITATION | 26 ++- inst/doc/intro.Rmd | 16 ++ inst/doc/intro.html | 344 +++++++++++++++++----------------------------- man/autoplotly.Rd | 22 ++ tests/testthat/test_all.R | 61 +++++++- vignettes/intro.Rmd | 16 ++ 13 files changed, 406 insertions(+), 256 deletions(-)
Title: Estimate Human Activity from Accelerometry Data
Description: Interfaces the 'actinet' Python
module <https://github.com/OxWearables/actinet> for an activity
classification model based on self-supervised
learning for wrist-worn accelerometer data.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between actinet versions 0.2.0 dated 2026-08-05 and 0.4.0 dated 2026-08-22
actinet-0.2.0/actinet/R/utils-pipe.R |only actinet-0.4.0/actinet/DESCRIPTION | 17 - actinet-0.4.0/actinet/MD5 | 26 +- actinet-0.4.0/actinet/NAMESPACE | 5 actinet-0.4.0/actinet/NEWS.md | 11 actinet-0.4.0/actinet/R/ac_download_model.R | 14 + actinet-0.4.0/actinet/R/acti_net.R |only actinet-0.4.0/actinet/R/actinet.R | 53 ++++ actinet-0.4.0/actinet/R/py_actinet.R |only actinet-0.4.0/actinet/R/py_require_actinet.R |only actinet-0.4.0/actinet/R/zzz.R | 2 actinet-0.4.0/actinet/man/ac_load_model.Rd | 2 actinet-0.4.0/actinet/man/acti_net.Rd |only actinet-0.4.0/actinet/man/actinet.Rd | 45 +++ actinet-0.4.0/actinet/man/py_require_actinet.Rd |only actinet-0.4.0/actinet/tests/testthat/test-actinet.R | 115 +++++++++- actinet-0.4.0/actinet/tests/testthat/test-python-actinet.R |only actinet-0.4.0/actinet/tests/testthat/test-python-requirements.R |only 18 files changed, 249 insertions(+), 41 deletions(-)
Title: Procrustes Cross-Validation
Description: Implements Procrustes cross-validation method for Principal Component Analysis, Principal Component Regression and Partial Least Squares regression models. S. Kucheryavskiy (2023) <doi:10.1016/j.aca.2023.341096>.
Author: Sergey Kucheryavskiy [aut, cre]
Maintainer: Sergey Kucheryavskiy <svkucheryavski@gmail.com>
Diff between pcv versions 1.1.0 dated 2023-08-12 and 1.2.0 dated 2026-08-22
DESCRIPTION | 16 ++++++++-------- MD5 | 33 +++++++++++++++++---------------- NAMESPACE | 1 - R/getxpvorth.R | 36 ++++++++++++++++++++++++++++++++---- R/pcv.R | 7 ++++--- R/pcvcrossval.R | 2 +- R/pcvpca.R | 19 ++++++++++++++++--- R/pcvpcr.R | 22 +++++++++++----------- R/pcvpls.R | 30 ++++++++++++++++++++---------- R/pcvreg.R | 30 ++++++++++++++++++++++++++---- README.md | 2 +- man/flipSigns.Rd |only man/getxpvorth.Rd | 1 + man/normalize.Rd | 6 +----- man/pcv.Rd | 2 +- man/pcvpca.Rd | 2 +- man/pcvpcr.Rd | 4 ++-- man/pcvpls.Rd | 4 ++-- 18 files changed, 144 insertions(+), 73 deletions(-)
Title: Evaluation of Inequality Constrained Hypotheses Using GORICA
Description: Implements the generalized order-restricted information criterion
approximation (GORICA), an AIC-like information criterion that can be
utilized to evaluate informative hypotheses specifying directional
relationships between model parameters in terms of (in)equality
constraints (see Altinisik, Van Lissa, Hoijtink, Oldehinkel, & Kuiper,
2021), <doi:10.31234/osf.io/t3c8g>. The GORICA is applicable not only to
normal linear models, but also to generalized linear models (GLMs),
generalized linear mixed models (GLMMs), structural equation models
(SEMs), and contingency tables. For contingency tables, restrictions on cell
probabilities can be non-linear.
Author: Rebecca M. Kuiper [aut],
Altinisik Yasin [aut],
Vanbrabant Leonard [ctb],
Caspar J. van Lissa [aut, cre]
Maintainer: Caspar J. van Lissa <c.j.vanlissa@tilburguniversity.edu>
Diff between gorica versions 0.1.5 dated 2026-02-12 and 0.1.6 dated 2026-08-22
DESCRIPTION | 8 MD5 | 47 ++-- NAMESPACE | 1 NEWS.md | 57 +++-- R/compare_hypotheses.R | 150 +++++++-------- R/create_matrices.R |only R/from_bain.R |only R/get_estimates_unique_to_gorica.R | 294 +++++++++++++++--------------- R/gorica_methods.R | 6 R/hox_2010.R | 58 ++--- R/import_parser.R | 26 +- R/print_functions.R | 90 ++++----- build/partial.rdb |binary man/constraint_to_equation.Rd |only man/constraint_to_row.Rd |only man/create_matrices.Rd |only man/expand_compound_constraints.Rd |only man/expand_parentheses.Rd |only man/flip_inequality.Rd |only man/order_terms.Rd |only man/school_admissions.Rd | 66 +++--- tests/testthat/test-contingency_supp1.R | 2 tests/testthat/test-contingency_supp2.R | 2 tests/testthat/test-contingency_supp2_2.R | 2 tests/testthat/test-contingency_supp2_3.R | 2 tests/testthat/test-contingency_supp3_2.R | 3 tests/testthat/test-contingency_supp4_1.R | 4 tests/testthat/test-contingency_supp4_2.R | 3 tests/testthat/test-gorica_table.R | 20 +- 29 files changed, 427 insertions(+), 414 deletions(-)
Title: Representation for Glycan Compositions and Structures
Description: Computational representations of glycan compositions and structures,
including details such as linkages, anomers, and substituents. Supports varying
levels of monosaccharide specificity (e.g., "Hex" or "Gal") and ambiguous linkages.
Provides robust parsing and generation of IUPAC-condensed structure strings.
Optimized for vectorized operations on glycan structures, with efficient handling
of duplications. As the cornerstone of the glycoverse ecosystem, this package
delivers the foundational data structures that power glycomics and glycoproteomics
analysis workflows.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glyrepr versions 0.14.0 dated 2026-07-21 and 1.0.0 dated 2026-08-22
glyrepr-0.14.0/glyrepr/man/reduce_structure_level.Rd |only glyrepr-0.14.0/glyrepr/tests/testthat/_snaps/structure-level.md |only glyrepr-1.0.0/glyrepr/DESCRIPTION | 6 glyrepr-1.0.0/glyrepr/MD5 | 193 + glyrepr-1.0.0/glyrepr/NAMESPACE | 17 glyrepr-1.0.0/glyrepr/NEWS.md | 29 glyrepr-1.0.0/glyrepr/R/alditol.R |only glyrepr-1.0.0/glyrepr/R/anomer.R | 8 glyrepr-1.0.0/glyrepr/R/color-utils.R | 39 glyrepr-1.0.0/glyrepr/R/composition.R | 116 - glyrepr-1.0.0/glyrepr/R/count-mono.R | 21 glyrepr-1.0.0/glyrepr/R/example-glycans.R | 2 glyrepr-1.0.0/glyrepr/R/fill-anomer-pos.R | 61 glyrepr-1.0.0/glyrepr/R/floating-localization.R |only glyrepr-1.0.0/glyrepr/R/floating-parts.R |only glyrepr-1.0.0/glyrepr/R/floating-substituents.R |only glyrepr-1.0.0/glyrepr/R/floating-symmetry.R |only glyrepr-1.0.0/glyrepr/R/iupac-to-structure.R | 460 ++++ glyrepr-1.0.0/glyrepr/R/linkage.R | 59 glyrepr-1.0.0/glyrepr/R/mono-type.R | 112 - glyrepr-1.0.0/glyrepr/R/monosaccharide.R | 220 ++ glyrepr-1.0.0/glyrepr/R/reorder-graph.R | 72 glyrepr-1.0.0/glyrepr/R/smap.R | 140 + glyrepr-1.0.0/glyrepr/R/structure-graph-low-level.R | 128 - glyrepr-1.0.0/glyrepr/R/structure-level.R | 160 - glyrepr-1.0.0/glyrepr/R/structure-tables.R | 1033 +++++++++- glyrepr-1.0.0/glyrepr/R/structure-to-iupac.R | 123 + glyrepr-1.0.0/glyrepr/R/structure.R | 174 + glyrepr-1.0.0/glyrepr/R/substituent.R | 133 + glyrepr-1.0.0/glyrepr/R/validate-helper.R | 56 glyrepr-1.0.0/glyrepr/README.md | 16 glyrepr-1.0.0/glyrepr/inst/doc/glycan-graph.R | 24 glyrepr-1.0.0/glyrepr/inst/doc/glycan-graph.Rmd | 78 glyrepr-1.0.0/glyrepr/inst/doc/glycan-graph.html | 145 + glyrepr-1.0.0/glyrepr/inst/doc/glyrepr.R | 7 glyrepr-1.0.0/glyrepr/inst/doc/glyrepr.Rmd | 46 glyrepr-1.0.0/glyrepr/inst/doc/glyrepr.html | 107 - glyrepr-1.0.0/glyrepr/inst/doc/smap.R | 4 glyrepr-1.0.0/glyrepr/inst/doc/smap.Rmd | 13 glyrepr-1.0.0/glyrepr/inst/doc/smap.html | 31 glyrepr-1.0.0/glyrepr/man/as_glycan_composition.Rd | 10 glyrepr-1.0.0/glyrepr/man/as_glycan_structure.Rd | 39 glyrepr-1.0.0/glyrepr/man/available_monosaccharides.Rd | 6 glyrepr-1.0.0/glyrepr/man/canonicalize_glycan_graph.Rd | 19 glyrepr-1.0.0/glyrepr/man/convert_to_generic.Rd | 16 glyrepr-1.0.0/glyrepr/man/count_mono.Rd | 14 glyrepr-1.0.0/glyrepr/man/enumerate_floating_graph_localizations.Rd |only glyrepr-1.0.0/glyrepr/man/enumerate_floating_localizations.Rd |only glyrepr-1.0.0/glyrepr/man/fill_anomer_pos.Rd | 13 glyrepr-1.0.0/glyrepr/man/get_alditol.Rd |only glyrepr-1.0.0/glyrepr/man/get_anomer.Rd | 5 glyrepr-1.0.0/glyrepr/man/get_mono_type.Rd | 14 glyrepr-1.0.0/glyrepr/man/get_structure_graphs.Rd | 10 glyrepr-1.0.0/glyrepr/man/get_structure_level.Rd | 43 glyrepr-1.0.0/glyrepr/man/glycan_composition.Rd | 4 glyrepr-1.0.0/glyrepr/man/glycan_structure.Rd | 84 glyrepr-1.0.0/glyrepr/man/graph_to_iupac.Rd | 19 glyrepr-1.0.0/glyrepr/man/has_floating_parts.Rd |only glyrepr-1.0.0/glyrepr/man/has_floating_substituents.Rd |only glyrepr-1.0.0/glyrepr/man/has_linkages.Rd | 7 glyrepr-1.0.0/glyrepr/man/localize_floating_parts.Rd |only glyrepr-1.0.0/glyrepr/man/n_glycan_core.Rd | 2 glyrepr-1.0.0/glyrepr/man/new_glycan_structure.Rd | 23 glyrepr-1.0.0/glyrepr/man/remove_linkages.Rd | 10 glyrepr-1.0.0/glyrepr/man/remove_substituents.Rd | 8 glyrepr-1.0.0/glyrepr/man/simap.Rd | 8 glyrepr-1.0.0/glyrepr/man/smap.Rd | 10 glyrepr-1.0.0/glyrepr/man/smap2.Rd | 8 glyrepr-1.0.0/glyrepr/man/smap_unique.Rd | 3 glyrepr-1.0.0/glyrepr/man/spmap.Rd | 8 glyrepr-1.0.0/glyrepr/man/structure_candidate_edges.Rd |only glyrepr-1.0.0/glyrepr/man/structure_component_membership.Rd |only glyrepr-1.0.0/glyrepr/man/structure_floating_candidates.Rd |only glyrepr-1.0.0/glyrepr/man/structure_tables.Rd | 92 glyrepr-1.0.0/glyrepr/man/structure_to_iupac.Rd | 19 glyrepr-1.0.0/glyrepr/man/validate_glycan_graph.Rd | 19 glyrepr-1.0.0/glyrepr/man/validate_glycan_graph_vector.Rd | 32 glyrepr-1.0.0/glyrepr/tests/testthat/_snaps/alditol.md |only glyrepr-1.0.0/glyrepr/tests/testthat/_snaps/composition.md | 30 glyrepr-1.0.0/glyrepr/tests/testthat/_snaps/floating-localization.md |only glyrepr-1.0.0/glyrepr/tests/testthat/_snaps/floating-parts.md |only glyrepr-1.0.0/glyrepr/tests/testthat/_snaps/floating-substituents.md |only glyrepr-1.0.0/glyrepr/tests/testthat/_snaps/floating-validation.md |only glyrepr-1.0.0/glyrepr/tests/testthat/_snaps/low-level-structure.md | 24 glyrepr-1.0.0/glyrepr/tests/testthat/_snaps/smap.md |only glyrepr-1.0.0/glyrepr/tests/testthat/_snaps/structure-tables.md |only glyrepr-1.0.0/glyrepr/tests/testthat/_snaps/structure.md | 61 glyrepr-1.0.0/glyrepr/tests/testthat/test-alditol.R |only glyrepr-1.0.0/glyrepr/tests/testthat/test-anomer.R | 6 glyrepr-1.0.0/glyrepr/tests/testthat/test-color-substituents.R | 48 glyrepr-1.0.0/glyrepr/tests/testthat/test-composition.R | 73 glyrepr-1.0.0/glyrepr/tests/testthat/test-count-mono.R | 50 glyrepr-1.0.0/glyrepr/tests/testthat/test-fill-anomer-pos.R | 64 glyrepr-1.0.0/glyrepr/tests/testthat/test-floating-localization.R |only glyrepr-1.0.0/glyrepr/tests/testthat/test-floating-parts.R |only glyrepr-1.0.0/glyrepr/tests/testthat/test-floating-substituents.R |only glyrepr-1.0.0/glyrepr/tests/testthat/test-floating-symmetry.R |only glyrepr-1.0.0/glyrepr/tests/testthat/test-floating-validation.R |only glyrepr-1.0.0/glyrepr/tests/testthat/test-iupac-to-structure.R | 270 ++ glyrepr-1.0.0/glyrepr/tests/testthat/test-linkage.R | 101 glyrepr-1.0.0/glyrepr/tests/testthat/test-low-level-structure.R | 151 + glyrepr-1.0.0/glyrepr/tests/testthat/test-mono-type.R | 129 + glyrepr-1.0.0/glyrepr/tests/testthat/test-monosaccharide.R | 106 + glyrepr-1.0.0/glyrepr/tests/testthat/test-smap.R | 149 + glyrepr-1.0.0/glyrepr/tests/testthat/test-structure-level.R | 266 +- glyrepr-1.0.0/glyrepr/tests/testthat/test-structure-tables.R | 539 +++++ glyrepr-1.0.0/glyrepr/tests/testthat/test-structure-to-iupac.R | 41 glyrepr-1.0.0/glyrepr/tests/testthat/test-structure.R | 133 - glyrepr-1.0.0/glyrepr/tests/testthat/test-substituent.R | 54 glyrepr-1.0.0/glyrepr/vignettes/glycan-graph.Rmd | 78 glyrepr-1.0.0/glyrepr/vignettes/glyrepr.Rmd | 46 glyrepr-1.0.0/glyrepr/vignettes/smap.Rmd | 13 112 files changed, 5731 insertions(+), 1079 deletions(-)
Title: Discriminant Adaptive Nearest Neighbor Classification
Description: Discriminant Adaptive Nearest Neighbor Classification is a
variation of k nearest neighbors where the shape of the neighborhood is
data driven. The neighborhood is elongated along class boundaries and
shrunk in the orthogonal direction. This package implements dann and
sub_dann from Hastie (1996)
<https://web.stanford.edu/~hastie/Papers/dann_IEEE.pdf>.
Author: Greg McMahan [aut, cre]
Maintainer: Greg McMahan <gmcmacran@gmail.com>
Diff between dann versions 1.1.0 dated 2026-04-25 and 1.2.0 dated 2026-08-22
dann-1.1.0/dann/man/figures |only dann-1.2.0/dann/DESCRIPTION | 12 +- dann-1.2.0/dann/MD5 | 68 ++++++------- dann-1.2.0/dann/NEWS.md | 5 dann-1.2.0/dann/R/dann.R | 78 ++++++++------- dann-1.2.0/dann/R/graph_eigenvalues.R | 31 +++-- dann-1.2.0/dann/R/print.R | 12 +- dann-1.2.0/dann/R/sub_dann.R | 69 +++++++------ dann-1.2.0/dann/README.md | 77 +++++++------- dann-1.2.0/dann/man/dann.Rd | 10 - dann-1.2.0/dann/man/dann.data.frame.Rd | 10 - dann-1.2.0/dann/man/dann.default.Rd | 10 - dann-1.2.0/dann/man/dann.formula.Rd | 12 +- dann-1.2.0/dann/man/dann.matrix.Rd | 10 - dann-1.2.0/dann/man/dann.recipe.Rd | 12 +- dann-1.2.0/dann/man/graph_eigenvalues.Rd | 19 +-- dann-1.2.0/dann/man/graph_eigenvalues.data.frame.Rd | 21 ++-- dann-1.2.0/dann/man/graph_eigenvalues.default.Rd | 19 +-- dann-1.2.0/dann/man/graph_eigenvalues.formula.Rd | 21 ++-- dann-1.2.0/dann/man/graph_eigenvalues.matrix.Rd | 19 +-- dann-1.2.0/dann/man/graph_eigenvalues.recipe.Rd | 21 ++-- dann-1.2.0/dann/man/predict.dann.Rd | 12 +- dann-1.2.0/dann/man/predict.sub_dann.Rd | 17 +-- dann-1.2.0/dann/man/print.dann.Rd | 7 - dann-1.2.0/dann/man/print.sub_dann.Rd | 11 +- dann-1.2.0/dann/man/sub_dann.Rd | 23 ++-- dann-1.2.0/dann/man/sub_dann.data.frame.Rd | 23 ++-- dann-1.2.0/dann/man/sub_dann.default.Rd | 23 ++-- dann-1.2.0/dann/man/sub_dann.formula.Rd | 25 ++-- dann-1.2.0/dann/man/sub_dann.matrix.Rd | 23 ++-- dann-1.2.0/dann/man/sub_dann.recipe.Rd | 25 ++-- dann-1.2.0/dann/src/internal_armadillo_helpers.cpp | 74 +++++++++++--- dann-1.2.0/dann/tests/testthat/test_A_dann.R | 17 +++ dann-1.2.0/dann/tests/testthat/test_C_predict_dann.R | 76 ++++++++++++++ dann-1.2.0/dann/tests/testthat/test_D_predict_sub_dann.R | 20 +++ 35 files changed, 555 insertions(+), 357 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-12 3.2.3
2023-05-04 2.7.0
2022-09-26 2.4.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-08 1.0.4
2022-03-25 1.0.2
2022-01-28 1.0.1
2021-11-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-22 0.1.3
Title: Stratified Randomized Experiments
Description: Estimate average treatment effects (ATEs) in stratified
randomized experiments. 'sreg' supports a wide range of stratification
designs, including matched pairs, n-tuple designs, and larger strata with
many units — possibly of unequal size across strata. 'sreg' is designed to
accommodate scenarios with multiple treatments and cluster-level treatment
assignments, and accommodates optimal linear covariate adjustment based on
baseline observable characteristics. 'sreg' computes estimators and
standard errors based on Bugni, Canay, Shaikh (2018)
<doi:10.1080/01621459.2017.1375934>;
Bugni, Canay, Shaikh, Tabord-Meehan (2024+)
<doi:10.48550/arXiv.2204.08356>;
Jiang, Linton, Tang, Zhang (2023+)
<doi:10.48550/arXiv.2201.13004>;
Bai, Jiang, Romano, Shaikh, and Zhang (2024)
<doi:10.1016/j.jeconom.2024.105740>;
Bai (2022) <doi:10.1257/aer.20201856>;
Bai, Romano, and Shaikh (2022)
<doi:10.1080/01621459.2021.1883437>;
Liu (2024+) <doi:10.48550/arXiv.2301.09016& [...truncated...]
Author: Juri Trifonov [aut, cre, cph],
Yuehao Bai [aut],
Azeem Shaikh [aut],
Max Tabord-Meehan [aut]
Maintainer: Juri Trifonov <jutrifonov@u.northwestern.edu>
Diff between sreg versions 2.0.2 dated 2025-08-25 and 2.1.0 dated 2026-08-22
sreg-2.0.2/sreg/R/'2.0(dev)' |only sreg-2.1.0/sreg/DESCRIPTION | 30 sreg-2.1.0/sreg/MD5 | 56 sreg-2.1.0/sreg/NEWS.md | 64 sreg-2.1.0/sreg/R/core.R | 437 +++-- sreg-2.1.0/sreg/R/data_check.r | 76 sreg-2.1.0/sreg/R/dgp_obs.r | 58 sreg-2.1.0/sreg/R/dgp_po.r | 10 sreg-2.1.0/sreg/R/output.r | 40 sreg-2.1.0/sreg/R/pi_hat.r | 116 - sreg-2.1.0/sreg/R/result.r | 65 sreg-2.1.0/sreg/R/tau_hat.r | 252 -- sreg-2.1.0/sreg/R/var_hat.r | 393 ++-- sreg-2.1.0/sreg/README.md | 82 sreg-2.1.0/sreg/build/partial.rdb |binary sreg-2.1.0/sreg/build/vignette.rds |binary sreg-2.1.0/sreg/inst/doc/intro-to-sreg.R | 222 ++ sreg-2.1.0/sreg/inst/doc/intro-to-sreg.Rmd | 477 ++++- sreg-2.1.0/sreg/inst/doc/intro-to-sreg.html | 872 ++++++++-- sreg-2.1.0/sreg/man/plot.sreg.Rd | 19 sreg-2.1.0/sreg/man/print.sreg.Rd | 17 sreg-2.1.0/sreg/man/sreg.Rd | 151 + sreg-2.1.0/sreg/man/sreg.rgen.Rd | 67 sreg-2.1.0/sreg/tests/testthat/test-cluster-large-variance.R |only sreg-2.1.0/sreg/tests/testthat/test-cluster-mixed-components.R |only sreg-2.1.0/sreg/tests/testthat/test-cluster-small-correction.R |only sreg-2.1.0/sreg/tests/testthat/test-core.R | 174 - sreg-2.1.0/sreg/tests/testthat/test-design-classifier-warning.R |only sreg-2.1.0/sreg/tests/testthat/test-general-k-mixed.R |only sreg-2.1.0/sreg/tests/testthat/test-mixed-adjustment-validation.R |only sreg-2.1.0/sreg/tests/testthat/test-rgen-covariate-output.R |only sreg-2.1.0/sreg/tests/testthat/test-rgen-large-custom.R |only sreg-2.1.0/sreg/tests/testthat/test-rgen-mixed.R |only sreg-2.1.0/sreg/vignettes/intro-to-sreg.Rmd | 477 ++++- 34 files changed, 2936 insertions(+), 1219 deletions(-)
Title: 'Shiny' Bindings for Designsystemet Components
Description: Provides 'R' wrappers for the Designsystemet component library
<https://designsystemet.no>, enabling use of Norwegian government design system
components in 'Shiny' applications. Includes web components and CSS-based
HTML components with full 'Shiny' input binding support.
Author: Novica Nakov [aut, cre, cph]
Maintainer: Novica Nakov <nnovica@gmail.com>
Diff between shinyds versions 0.3.0 dated 2026-06-08 and 0.5.0 dated 2026-08-22
DESCRIPTION | 6 MD5 | 42 ++- NAMESPACE | 2 NEWS.md | 28 ++ R/ds-dependencies.R | 4 R/ds-input.R | 88 ++++++++ R/ds-misc.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/getting-started.html | 11 - inst/doc/reactivity-patterns.R | 30 ++ inst/doc/reactivity-patterns.html | 326 +++++++++++++++++-------------- inst/doc/reactivity-patterns.qmd | 41 +++ inst/examples/showcase/app.R | 17 - inst/www/css/designsystemet.min.css | 6 inst/www/js/designsystemet-web.umd.js | 88 +++++++- inst/www/js/ds-bindings.js | 53 ++++- man/ds_radio.Rd | 7 man/ds_radio_group.Rd |only man/update_ds_radio_group.Rd |only tests/testthat/test-components.R | 44 ++++ tests/testthat/test-showcase-shinytest.R | 63 +++++ vignettes/reactivity-patterns.qmd | 41 +++ 23 files changed, 693 insertions(+), 210 deletions(-)
Title: Be Nice on the Web
Description: Be responsible when scraping data from websites by following polite principles: introduce yourself, ask for permission, take slowly and never ask twice.
Author: Dmytro Perepolkin [aut, cre]
Maintainer: Dmytro Perepolkin <dperepolkin@gmail.com>
This is a re-admission after prior archival of version 0.1.4 dated 2026-05-11
Diff between polite versions 0.1.4 dated 2026-05-11 and 0.1.4 dated 2026-08-22
0 files changed
Title: Read and Write 'wal' Bitmap Image Files and Other 'Quake' Assets
Description: Read 'Quake' assets including bitmap images and textures in 'wal' file format. This package also provides support for extracting these assets from 'WAD' and 'PAK' file archives. It can also read models in 'MDL' and 'MD2' formats.
Author: Tim Schaefer [aut, cre]
Maintainer: Tim Schaefer <ts+code@rcmd.org>
Diff between wal versions 0.1.1 dated 2024-02-02 and 0.2.1 dated 2026-08-22
DESCRIPTION | 12 MD5 | 28 - R/image_to_wal.R | 6 R/palette.R | 2 R/read_helpers.R |only R/read_model_common.R | 2 R/read_model_md2.R | 6 R/read_model_mdl.R | 10 R/read_pak.R | 6 R/read_wad.R | 10 R/read_wal.R | 674 ++++++++++++++-------------- build/vignette.rds |binary inst/doc/wal.R | 80 +-- inst/doc/wal.html | 886 ++++++++++++++++++------------------- tests/testthat/Rplots.pdf |only tests/testthat/test-plot.R |only tests/testthat/test-read_helpers.R |only 17 files changed, 865 insertions(+), 857 deletions(-)
Title: Nonparametric Additive Instrumental Variable Estimator and
Related IV Methods
Description: In empirical studies, instrumental variable (IV) regression is the signature method to solve the endogeneity problem. If we enforce the exogeneity condition of the IV, it is likely that we end up with a large set of IVs without knowing which ones are good. Also, one could face the model uncertainty for structural equation, as large micro dataset is commonly available nowadays. This package uses adaptive group lasso and B-spline methods to select the nonparametric components of the IV function, with the linear function being a special case (naivereg). The package also incorporates two stage least squares estimator (2SLS), generalized method of moment (GMM), generalized empirical likelihood (GEL) methods post instrument selection, logistic-regression instrumental variables estimator (LIVE, for dummy endogenous variable problem), double-selection plus instrumental variable estimator (DS-IV) and double selection plus logistic regression instrumental variable estimator (DS-LIVE), where the [...truncated...]
Author: Qingliang Fan [aut, cre],
KongYu He [aut],
Wei Zhong [aut]
Maintainer: Qingliang Fan <michaelqfan@xmu.edu.cn>
Diff between naivereg versions 1.0.5 dated 2020-03-18 and 1.0.7 dated 2026-08-22
DESCRIPTION | 17 ++++++++++++----- MD5 | 6 +++--- man/DSIVdata.Rd | 16 ++++++++-------- man/DSLIVEdata.Rd | 20 ++++++++++---------- 4 files changed, 33 insertions(+), 26 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-16 1.2.1
2024-06-27 1.2.0
2023-06-24 1.1.1
2023-02-02 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-20 0.1.4
2026-01-22 0.1.3
2026-01-17 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-08-02 0.6.0
2026-07-27 0.5.1
2026-04-14 0.2.5
2026-03-17 0.2.4
2026-03-12 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-24 2.1.7
2025-10-24 2.1.6
2025-07-17 2.1.5
2025-01-24 2.1.3
2024-08-31 2.1.2
2024-04-21 2.1.0
2022-03-01 1.0.6
2021-04-21 1.0.5
2021-03-09 1.0.4
2021-02-11 1.0.3
2020-06-07 1.0.2
2020-03-09 1.0.1
2020-02-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-11 0.1.4
2023-06-30 0.1.3
2022-08-09 0.1.2
2019-11-30 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-07-29 0.0.17
2024-07-13 0.0.15
2024-05-10 0.0.14
2024-04-15 0.0.13
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement
complex random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain
an efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [...truncated...]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.9.23 dated 2026-07-23 and 1.9.25 dated 2026-08-22
DESCRIPTION | 8 ++--- MD5 | 32 +++++++++++----------- NEWS | 10 +++++++ R/TMB.R | 7 ++++- inst/include/TMB.hpp | 10 +++++++ inst/include/TMBad/TMBad.cpp | 2 + inst/include/TMBad/eigen_numtraits.hpp | 28 ++++++++++++++++++++ inst/include/TMBad/global.hpp | 2 + inst/include/atomic_math.hpp | 1 inst/include/tmb_core.hpp | 46 ++++++++++++++++++++------------- inst/include/tmbutils/R_inla.hpp | 23 +++++++++------- inst/include/tmbutils/array.hpp | 8 ++--- inst/include/tmbutils/density.hpp | 31 ++++++++++------------ inst/include/tmbutils/kronecker.hpp | 4 +- inst/include/tmbutils/matexp.hpp | 14 +++++----- inst/include/tmbutils/tmbutils.hpp | 1 inst/include/tmbutils/vector.hpp | 11 +++---- 17 files changed, 152 insertions(+), 86 deletions(-)
Title: Take Screenshots (Screen Capture) from R Command
Description: Take screenshots from R command and locate an image position.
Author: Toshikazu Matsumura [aut, cre]
Maintainer: Toshikazu Matsumura <matutosi@gmail.com>
Diff between screenshot versions 0.9.2 dated 2025-08-26 and 0.9.3 dated 2026-08-22
DESCRIPTION | 8 - MD5 | 35 +++--- NEWS.md | 46 +++++++ R/clipboard.R | 7 - R/display.R | 48 ++++++-- R/locate_image.R | 210 ++++++++++++++++++++++++++---------- R/screenshot.R | 60 ++++++---- inst/WORDLIST | 2 man/crop_image.Rd | 2 man/is_all_same.Rd | 4 man/locate_image.Rd | 12 +- man/locate_ndl_in_hay.Rd | 17 ++ man/screenshot.Rd | 6 - tests/testthat.R | 8 - tests/testthat/test-clipboard.R |only tests/testthat/test-compare_table.R |only tests/testthat/test-crop_image.R |only tests/testthat/test-display.R |only tests/testthat/test-find_needle.R | 47 ++++++-- tests/testthat/test-index2xy.R |only tests/testthat/test-locate_tol.R |only tests/testthat/test-screenshot.R |only 22 files changed, 379 insertions(+), 133 deletions(-)
Title: Shiny Application for Latent Structure Analysis with a Graphical
User Interface
Description: Provides an interactive Shiny-based toolkit for conducting latent structure analyses, including Latent Profile Analysis (LPA), Latent Class Analysis (LCA), Latent Trait Analysis (LTA/IRT), Exploratory Factor Analysis (EFA), Confirmatory Factor Analysis (CFA), and Structural Equation Modeling (SEM). The implementation is grounded in established methodological frameworks: LPA is supported through 'tidyLPA' (Rosenberg et al., 2018) <doi:10.21105/joss.00978>, LCA through 'poLCA' (Linzer & Lewis, 2011) <doi:10.32614/CRAN.package.poLCA> & 'glca' (Kim & Kim, 2024) <doi:10.32614/CRAN.package.glca>, LTA/IRT via 'mirt' (Chalmers, 2012) <doi:10.18637/jss.v048.i06>, and EFA via 'psych' (Revelle, 2025). SEM and CFA functionalities build upon the 'lavaan' framework (Rosseel, 2012) <doi:10.18637/jss.v048.i02>. The CFA/SEM module additionally supports multi-group invariance testing, latent growth modelling, modification indices, and path diagram visualisation. [...truncated...]
Author: Hasan Djidu [aut, cre] ,
Heri Retnawati [ctb] ,
Samsul Hadi [ctb] ,
Haryanto [ctb]
Maintainer: Hasan Djidu <hasandjidu@gmail.com>
Diff between projectLSA versions 0.0.9 dated 2026-05-09 and 0.1.1 dated 2026-08-22
DESCRIPTION | 22 MD5 | 52 NAMESPACE | 39 NEWS.md | 70 R/zzz.R | 40 README.md | 48 build/vignette.rds |binary inst/app/Rplots.pdf |only inst/app/ai_helper.R |only inst/app/ai_widget_ui.R |only inst/app/app.R | 80 inst/app/cfa_report.Rmd | 277 - inst/app/cfa_ui.R | 377 + inst/app/console_widget_ui.R |only inst/app/efa_report.Rmd |only inst/app/efa_ui.R | 88 inst/app/homepage_ui.R | 11 inst/app/lca_report.Rmd |only inst/app/lca_ui.R | 31 inst/app/lpa_report.Rmd |only inst/app/lpa_ui.R | 33 inst/app/lta_report.Rmd |only inst/app/lta_ui.R | 70 inst/app/report_utils.R |only inst/app/rsconnect/shinyapps.io/hasandjidu/ProjectLSA.dcf | 2 inst/app/serverAIWidget.R |only inst/app/serverCFA.R | 2729 +++++++++----- inst/app/serverEFA.R | 498 ++ inst/app/serverLCA.R | 229 + inst/app/serverLPA.R | 237 + inst/app/serverLTA.R | 421 ++ inst/app/styleCSS.R | 9 32 files changed, 4157 insertions(+), 1206 deletions(-)
Title: Ecological Analysis and Visualization
Description: Support ecological analyses such as ordination and clustering.
Contains consistent and easy wrapper functions of 'stat', 'vegan', and
'labdsv' packages, and visualisation functions of ordination and clustering.
Author: Toshikazu Matsumura [aut, cre]
Maintainer: Toshikazu Matsumura <matutosi@gmail.com>
Diff between ecan versions 0.2.1 dated 2023-07-07 and 0.2.2 dated 2026-08-22
ecan-0.2.1/ecan/man/figures/README-unnamed-chunk-4-1.png |only ecan-0.2.1/ecan/man/figures/README-unnamed-chunk-6-1.png |only ecan-0.2.1/ecan/man/figures/README-unnamed-chunk-6-2.png |only ecan-0.2.1/ecan/man/figures/README-unnamed-chunk-6-3.png |only ecan-0.2.1/ecan/man/figures/README-unnamed-chunk-7-1.png |only ecan-0.2.1/ecan/man/figures/README-unnamed-chunk-7-2.png |only ecan-0.2.2/ecan/DESCRIPTION | 16 +- ecan-0.2.2/ecan/MD5 | 30 ++- ecan-0.2.2/ecan/NAMESPACE | 12 + ecan-0.2.2/ecan/NEWS.md | 13 + ecan-0.2.2/ecan/R/convert.R | 2 ecan-0.2.2/ecan/R/ordination.R | 10 - ecan-0.2.2/ecan/README.md | 115 +++++++-------- ecan-0.2.2/ecan/man/figures/README-cluster-1.png |only ecan-0.2.2/ecan/man/figures/README-cluster-2.png |only ecan-0.2.2/ecan/man/figures/README-cluster-3.png |only ecan-0.2.2/ecan/man/figures/README-diversity-1.png |only ecan-0.2.2/ecan/man/figures/README-ordination-1.png |only ecan-0.2.2/ecan/man/figures/README-ordination-2.png |only ecan-0.2.2/ecan/tests/testthat/test-cluster.R |only ecan-0.2.2/ecan/tests/testthat/test-convert.R |only ecan-0.2.2/ecan/tests/testthat/test-ind_val.R |only ecan-0.2.2/ecan/tests/testthat/test-one2multi.R |only ecan-0.2.2/ecan/tests/testthat/test-ordination.R | 84 ++++++++++ 24 files changed, 195 insertions(+), 87 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-08-04 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-01-15 0.2.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-08-04 2.1.7
2026-04-29 2.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-12-04 2.0.0
2023-02-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-06-13 0.9.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-23 1.0.2
2025-11-03 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-29 0.3.13
2026-03-19 0.3.12
2023-09-24 0.3.11
2023-01-26 0.3.10
2023-01-08 0.3.9
2022-08-27 0.3.8
2020-08-07 0.3.7
2019-08-22 0.3.6
2019-03-07 0.3.5
2018-09-02 0.3.4
2018-06-12 0.3.3
2018-03-17 0.3.2
2018-03-01 0.3.1
2016-08-04 0.2.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-31 0.2.1
2024-01-11 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-13 1.0.0
2020-05-28 0.1.1
2020-05-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-28 1.6
2026-04-22 1.5
2026-04-07 1.4
2025-08-25 1.3
2024-05-07 1.2
2024-04-05 1.1
2024-03-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-07-18 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-08 0.3.0
2023-08-09 0.2.1
2023-03-09 0.2.0
2023-02-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-14 1.6.2
2026-06-30 1.6.1
2026-05-18 1.6.0
2026-04-14 1.5.1
2026-03-23 1.5.0
2025-12-20 1.4.0
2025-09-13 1.3.0
2025-07-19 1.2.0
2025-05-07 1.1.1
2025-05-02 1.1.0
2025-03-21 1.0.1
2025-03-13 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-08-08 0.9.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-04-23 0.7.1
Title: Import Origin(R) Project Files
Description: Read the data from Origin(R) project files ('*.opj')
<https://www.originlab.com/doc/User-Guide/Origin-File-Types>.
No write support is planned.
Author: Miquel Garriga [aut],
Stefan Gerlach [aut],
Ion Vasilief [aut],
Alex Kargovsky [aut],
Knut Franke [ctb],
Alexander Semke [ctb],
Tilman Benkert [ctb],
Kasper Peeters [ctb],
Russell Standish [ctb],
Mehdi Chinoune [ctb],
Ivan Krylov [cre]
Maintainer: Ivan Krylov <ikrylov@disroot.org>
Diff between Ropj versions 0.3-6 dated 2025-03-15 and 0.3-7 dated 2026-08-22
DESCRIPTION | 6 ++-- MD5 | 31 +++++++++++++++++------ build/partial.rdb |binary inst/NEWS.Rd | 10 +++++++ inst/bugs.tar.xz |only src/config.h | 2 - src/liborigin/OriginAnyParser.cpp | 10 +++++-- src/liborigin/OriginObj.h | 51 ++++++++++++++++++++++---------------- src/liborigin/compile |only src/liborigin/tests |only src/liborigin/tree.hh | 2 - tests |only 12 files changed, 77 insertions(+), 35 deletions(-)
Title: Run 'lavaan' Models from Keys Lists
Description: Specifying 'lavaan' models manually can be time consuming when
multiple similar models are required. The 'semFromKeys' package streamlines
the process of running 'lavaan' models by generating model code from simple
keys lists and running entire collections of models at once.
The package was inspired by the process used in the code for
Bainbridge, T. F., Ludeke, S. G., & Smillie, L. D. (2022)
<doi:10.1037/pspp0000395>.
The package also optionally checks that identical models have not been run
on the same data, which saves time when code needs to be run again.
Author: Timothy F. Bainbridge [aut, cre, cph]
Maintainer: Timothy F. Bainbridge <tfbainbridge@gmail.com>
Diff between semFromKeys versions 0.3.0 dated 2026-07-30 and 0.5.2 dated 2026-08-22
DESCRIPTION | 10 MD5 | 60 ++-- NAMESPACE | 20 - NEWS.md | 32 ++ R/bifactor.from.keys.R | 20 - R/cache.clean.R | 4 R/cache.setup.R | 28 - R/cfa.from.keys.R | 12 R/efa.from.keys.R | 28 + R/esem.from.keys.r |only R/esem.from.mods.R | 261 +++++++++++------- R/sem.check.R | 355 +++++++++++++++++++----- R/sem.cor.R | 445 +++++++++++++++++++++++++------ R/sem.path.R |only README.md | 225 +++++++++++++-- man/bifactor.from.keys.Rd | 30 +- man/cache.clean.Rd | 4 man/cache.setup.Rd | 28 - man/cfa.from.keys.Rd | 27 + man/efa.from.keys.Rd | 40 +- man/esem.from.keys.Rd |only man/esem.from.mods.Rd | 197 +++++++------ man/sem.check.Rd | 63 ++-- man/sem.cor.Rd | 108 +++---- man/sem.path.Rd |only tests/testthat/helper.R | 3 tests/testthat/test-bifactor.from.keys.R | 17 + tests/testthat/test-cfa.from.keys.R | 17 + tests/testthat/test-efa.from.keys.R | 39 +- tests/testthat/test-esem.from.keys.r |only tests/testthat/test-esem.from.mods.R | 49 +++ tests/testthat/test-sem.check.R | 19 + tests/testthat/test-sem.cor.R | 330 +++++++++++++++------- tests/testthat/test-sem.path.R |only 34 files changed, 1762 insertions(+), 709 deletions(-)
Title: Multidimensional Iterative Proportional Fitting and Alternative
Models
Description: An implementation of the iterative proportional fitting (IPFP),
maximum likelihood, minimum chi-square and weighted least squares procedures
for updating a N-dimensional array with respect to given target marginal
distributions (which, in turn can be multidimensional). The package also
provides an application of the IPFP to simulate multivariate Bernoulli
distributions.
Author: Johan Barthelemy [aut, cre],
Thomas Suesse [aut],
Mohammad Namazi-Rad [ctb]
Maintainer: Johan Barthelemy <johan@uow.edu.au>
Diff between mipfp versions 3.2.1 dated 2018-08-29 and 3.2.3 dated 2026-08-22
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- man/gof.estimates.Rd | 9 +++------ man/mipfp-package.Rd | 4 ++-- man/spnamur.Rd | 2 +- man/vcov.mipfp.Rd | 18 ++++++------------ 6 files changed, 21 insertions(+), 30 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates graphics with
details from statistical tests included in the plots themselves. It
provides an easier syntax to generate information-rich plots for
statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports the most common types of
statistical approaches and tests: parametric, nonparametric, robust,
and Bayesian versions of t-test/ANOVA, correlation analyses,
contingency table analysis, meta-analysis, and regression analyses.
References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 1.0.0 dated 2026-04-23 and 1.1.0 dated 2026-08-22
DESCRIPTION | 25 ++++++------ MD5 | 72 +++++++++++++++++------------------ NEWS.md | 9 +++- R/combine-plots.R | 15 +------ R/extract-stats.R | 6 -- R/ggpiestats-ggbarstats-helpers.R | 8 +-- R/ggwithinstats.R | 5 +- README.md | 28 ++----------- build/partial.rdb |binary build/vignette.rds |binary man/ggbarstats.Rd | 6 +- man/ggbetweenstats.Rd | 8 +-- man/ggcoefstats.Rd | 8 +-- man/ggcorrmat.Rd | 2 man/ggdotplotstats.Rd | 4 - man/gghistostats.Rd | 4 - man/ggpiestats.Rd | 6 +- man/ggscatterstats.Rd | 6 +- man/ggstatsplot-package.Rd | 5 ++ man/ggwithinstats.Rd | 8 +-- man/grouped_ggbarstats.Rd | 8 +-- man/grouped_ggbetweenstats.Rd | 10 ++-- man/grouped_ggcorrmat.Rd | 4 - man/grouped_ggdotplotstats.Rd | 6 +- man/grouped_gghistostats.Rd | 6 +- man/grouped_ggpiestats.Rd | 8 +-- man/grouped_ggscatterstats.Rd | 6 +- man/grouped_ggwithinstats.Rd | 10 ++-- man/theme_ggstatsplot.Rd | 2 tests/testthat/_snaps/r-4.7 |only tests/testthat/helper-z-fixtures.R |only tests/testthat/test-ggbarstats.R | 23 +---------- tests/testthat/test-ggbetweenstats.R | 4 - tests/testthat/test-ggcoefstats.R | 5 -- tests/testthat/test-ggdotplotstats.R | 16 ------- tests/testthat/test-ggpiestats.R | 18 -------- tests/testthat/test-ggwithinstats.R | 37 +++++++++++++---- tests/testthat/test-utils.R | 27 +++++++++++++ 38 files changed, 197 insertions(+), 218 deletions(-)
Title: Repel Visually Similar Colors for Colorblind Users in Various
Plots
Description: Iterate and repel visually similar colors away in various 'ggplot2' plots. When many groups are plotted at the same time on multiple axes, for instance stacked bars or scatter plots, effectively ordering colors becomes difficult. This tool iterates through color combinations to find the best solution to maximize visual distinctness of nearby groups, so plots are more friendly toward colorblind users. This is achieved by two distance measurements, distance between groups within the plot, and CIELAB color space distances between colors as described in Carter et al., (2018) <doi:10.25039/TR.015.2018>.
Author: Rui Fu [cre, aut, cph]
Maintainer: Rui Fu <raysinensis@gmail.com>
Diff between colorrepel versions 0.5.0 dated 2026-07-13 and 0.5.2 dated 2026-08-22
DESCRIPTION | 8 ++--- MD5 | 26 ++++++++--------- NEWS.md | 7 ++++ R/color_repel.R | 15 +++++++++- R/for_ggplot.R | 68 +++++++++++++++++++++++++++++++++++++++++++++-- R/interactive.R | 7 ++-- R/utils.R | 25 ++++++++--------- R/wrappers.R | 11 ++++--- README.md | 1 man/color_repel.Rd | 5 ++- man/gg_color_repel.Rd | 7 +++- man/matrix2_score.Rd | 4 +- man/matrix2_score_n.Rd | 4 +- man/scale_color_repel.Rd | 20 +++++++++++++ 14 files changed, 161 insertions(+), 47 deletions(-)
Title: Compute Maps and Properties of Polar Zonoids
Description: In each odd dimension is a convex body - the polar zonoid - whose generating functions are trigonometric polynomials. The polar zonoid is a straightforward generalization of the polar zonohedron in dimension 3, as defined by Chilton and Coxeter (1963) <doi:10.2307/2313051>. The package has some applications of the polar zonoid, including the properties of configuration spaces of arcs on the circle and 3x3 rotation matrices. There is also a root solver for trigonometric polynomials.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between polarzonoid versions 0.3-0 dated 2026-01-11 and 0.4-0 dated 2026-08-22
DESCRIPTION | 8 MD5 | 22 - NEWS.md | 6 build/vignette.rds |binary inst/doc/implicitization.html | 73 +++-- inst/doc/paths.html | 61 ++-- inst/doc/polarzonoid-guide.Rmd | 299 ++++++++++++++--------- inst/doc/polarzonoid-guide.html | 516 +++++++++++++++++++++++----------------- inst/doc/rotations.html | 65 ++--- inst/doc/unknot.pdf |binary vignettes/bibliography.bib | 41 +++ vignettes/polarzonoid-guide.Rmd | 299 ++++++++++++++--------- 12 files changed, 861 insertions(+), 529 deletions(-)
Title: MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Description: A system for writing hierarchical statistical models largely
compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models
and do basic R-style math, and compiling both models and nimbleFunctions via
custom-generated C++. 'NIMBLE' includes default methods for MCMC, Laplace
Approximation, deterministic nested approximations, Monte Carlo Expectation
Maximization, and some other tools.
The nimbleFunction system makes it easy to do things like implement new MCMC
samplers from R, customize the assignment of samplers to different parts of
a model from R, and compile the new samplers automatically via C++ alongside
the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language
by making it extensible: New distributions and functions can be added,
including as calls to external compiled code. Although most people think
of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models,
one can use 'NIMBLE' for writing arbitrary other kinds of model-generic
al [...truncated...]
Author: Perry de Valpine [aut],
Christopher Paciorek [aut, cre],
Daniel Turek [aut],
Nick Michaud [aut],
Cliff Anderson-Bergman [aut],
Fritz Obermeyer [aut],
Claudia Wehrhahn Cortes [aut] ,
Abel Rodriguez [aut] ,
Duncan Temple Lang [aut] ,
Wei Zhang [aut] ,
[...truncated...]
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between nimble versions 1.4.2 dated 2026-04-01 and 1.4.3 dated 2026-08-22
DESCRIPTION | 10 ++--- INSTALL | 6 +-- MD5 | 50 +++++++++++++-------------- R/BUGS_model.R | 4 +- R/BUGS_modelDef.R | 10 +++-- R/BUGS_nimbleGraph.R | 2 - R/MCMC_WAIC.R | 2 - R/MCMC_samplers.R | 49 ++++++++++---------------- R/cppDefs_ADtools.R | 2 - R/nimbleFunction_Rexecution.R | 2 + R/nimbleList_core.R | 4 -- R/setupMargNodes.R | 37 ++++++++----------- inst/NEWS.md | 33 +++++++++++++++++ inst/include/nimble/NimArr.h | 42 +++++++++++++++------- inst/include/nimble/RcppNimbleUtils.h | 18 ++++++--- inst/include/nimble/accessorClasses.h | 7 ++- inst/include/nimble/nimbleCppADbaseClass.cpp | 10 +++-- man/ADproxyModelClass-class.Rd | 3 - man/nimbleType-class.Rd | 7 --- man/samplers.Rd | 11 ++--- man/setupMargNodes.Rd | 22 +++++++---- man/setupOutputs.Rd | 3 + tests/testthat/mcmcTestLog_Correct.Rout | 4 -- tests/testthat/test-getDependencies.R | 10 ++--- tests/testthat/test-mcmc.R | 22 ++--------- tests/testthat/test-setupMargNodes.R | 2 - 26 files changed, 197 insertions(+), 175 deletions(-)
Title: Time-Varying Garch Models Through a State-Space Representation
Description: Estimates the time-varying (tv) parameters of the GARCH(1,1) model, enabling the modeling of non-stationary volatilities by allowing the model parameters to change gradually over time. The estimation and prediction processes are facilitated through the application of the Kalman filter and state-space equations. This package supports the estimation of tv parameters for various deterministic functions, which can be identified through exploratory analysis of different time periods or segments of return data. The methodology is grounded in the framework presented by Ferreira et al. (2017) <doi:10.1080/00949655.2017.1334778>.
Author: Guillermo Ferreira [aut],
Tomas Arancibia [aut, cre]
Maintainer: Tomas Arancibia <tarancibia2016@udec.cl>
Diff between tvGarchKF versions 0.0.1 dated 2025-05-30 and 1.0.0 dated 2026-08-21
DESCRIPTION | 25 ++++-- MD5 | 65 +++++++++++---- NAMESPACE | 77 +++++++++++++++--- R/NonParam-BS.R |only R/NonParam-LP.R |only R/NonParam-SS.R |only R/Parametric-function.R | 143 +++++++++++++++++++++++++++++++++- R/auto.tvGarchKF.R |only R/class-tvGarchKF.R |only R/class-tvGarchKFNonParam.R |only R/class-tvGarchKFNonParam_Fit.R |only R/helpers.R |only R/helpers_gamSS.R |only R/methods-fitted.R |only R/methods-nobs.R |only R/methods-plot.R |only R/methods-predict.R |only R/methods-residuals.R |only R/methods-summary.R |only R/methods-vcov.R |only R/tvCoef.R |only R/tvGarchKalman.R |only R/tvGarchKalmanFit.R | 154 +++++++++++++++++++++++++------------ R/tvGarchKalmanLoglike.R | 92 +++++----------------- R/tvGarchKalmanPrint.R | 99 ++++++++--------------- R/tvGarchNonParamFit.R |only R/tvGarchNonParamKF.R |only R/tvGarch_Sim.R | 43 ++++++---- R/tvParameter.R | 138 ++++++++++++++++++++++----------- inst/CITATION | 2 man/auto.tvGarchKF.Rd |only man/fitted-methods.Rd |only man/nobs-tvGarchKF-method.Rd |only man/plot-methods.Rd |only man/predict-methods.Rd |only man/residuals-tvGarchKF-method.Rd |only man/summary-methods.Rd |only man/tvGarchKF-class.Rd |only man/tvGarchKFNonParam-class.Rd |only man/tvGarchKFNonParam_Fit-class.Rd |only man/tvGarchKalmanFit.Rd | 68 +++++++++------- man/tvGarchKalmanLoglike.Rd | 32 +++---- man/tvGarchKalmanPrint.Rd | 30 +++---- man/tvGarchNonParamFit.Rd |only man/tvGarchNonParamKF.Rd |only man/tvGarch_Sim.Rd | 31 ++++--- man/tvParameter.Rd | 49 +++++++++-- man/vcov-tvGarchKF-method.Rd |only src/tvGarchKF.c | 15 +-- tests/testthat/test-indipsa.R | 12 +- 50 files changed, 695 insertions(+), 380 deletions(-)
Title: Reproducible Pipeline Infrastructure for Neuroscience
Description: Defines the underlying pipeline structure for reproducible
neuroscience, adopted by 'RAVE' (reproducible analysis and visualization
of intracranial electroencephalography); provides high-level class
definition to build, compile, set, execute, and share analysis pipelines.
Both R and 'Python' are supported, with 'Markdown' and 'shiny' dashboard
templates for extending and building customized pipelines. See the full
documentations at <https://rave.wiki>; to cite us,
check out our paper by Magnotti, Wang, and Beauchamp (2020,
<doi:10.1016/j.neuroimage.2020.117341>), or run
citation("ravepipeline") for details.
Author: Zhengjia Wang [aut, cre, cph],
John Magnotti [ctb, res],
Xiang Zhang [ctb, res],
Michael Beauchamp [ctb, res],
Trustees of University of Pennsylvania [cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ravepipeline versions 0.1.0 dated 2026-05-30 and 0.2.0 dated 2026-08-21
DESCRIPTION | 13 - MD5 | 36 ++- NAMESPACE | 9 NEWS.md | 51 +++++ R/aaa-colormap.R |only R/aaa.R | 8 R/class-PipelineTools.R | 189 ++++++++++++++++++++ R/filearray.R | 14 + R/pipeline-knitr.R | 16 + R/pipeline-preferences.R |only R/pipeline-report.R | 5 R/pipeline-run.R | 2 R/pipeline-tools.R | 203 --------------------- R/preference-basic.R |only R/preference-colormap.R |only R/rmarkdown.R |only man/PipelineTools.Rd | 270 +++++++++++++++++++++++++++++ man/define_preference_basic.Rd |only man/define_preference_colormap.Rd |only man/package-reports.Rd |only man/rave-colormaps.Rd |only man/rave-pipeline-preferences.Rd | 13 + man/ravepipeline-constants.Rd | 3 tests/testthat/test-pipeline-preferences.R |only 24 files changed, 604 insertions(+), 228 deletions(-)
Title: Functions for Declared Missing Values
Description: A zero dependency package containing functions to declare labels
and missing values, coupled with associated functions to create (weighted)
tables of frequencies and various other summary measures.
Some of the base functions have been rewritten to make use of the specific
information about the missing values, most importantly to distinguish
between empty and declared NA values.
Some functions have similar functionality with the corresponding ones from
packages "haven" and "labelled". The aim is to ensure as much compatibility
as possible with these packages, while offering an alternative in the
objects of class "declared".
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between declared versions 0.26 dated 2026-04-02 and 0.27 dated 2026-08-21
DESCRIPTION | 16 +- MD5 | 103 ++++++++------- NAMESPACE | 15 ++ R/as.declared.R | 69 ++++++++++ R/class_methods.R | 175 ++++++++++++++++++++++++- R/declared.R | 38 +++++ R/declared_package.R | 33 ++++ R/drop_undeclare.R | 28 ++++ R/haven.R | 27 +++ R/internals.R | 228 ++++++++++++++++++++++++++++++--- R/is.declared.R | 27 +++ R/is.empty.R | 30 ++++ R/labelled.R | 35 ++++- R/labels.R | 26 +++ R/measurement.R | 26 +++ R/missing_range.R | 31 ++++ R/missing_values.R | 31 ++++ R/onLoad.R | 220 ++++++++++---------------------- R/pillar.R | 40 +++++ R/print.R | 120 +++++++++++++++++ R/valid_na_index.R |only R/validate_declared.R | 26 +++ R/vctrs.R | 27 +++ R/vroom.R | 26 +++ R/wIQR.R | 27 +++ R/wfivenum.R | 28 ++++ R/wmean.R | 30 ++++ R/wmeasures.R |only R/wmedian.R | 28 ++++ R/wmode.R | 33 ++++ R/wquantile.R | 37 +++++ R/wsd.R | 27 +++ R/wstandardize.R | 28 ++++ R/wsummary.R | 35 ++++- R/wtable.R | 82 ++++++++--- R/wvar.R | 33 ++++ build |only inst/ChangeLog | 302 +++++++++++++++++++++++--------------------- inst/WORDLIST | 2 inst/doc |only man/declared-package.Rd |only man/declared.Rd | 4 man/declared_internal.Rd | 1 man/declared_package.Rd | 7 - man/drop_undeclare.Rd | 6 man/labels.Rd | 4 man/measurement.Rd | 4 man/valid_na_index.Rd |only man/weighted.Rd | 122 ++++++++++------- src/declared.c | 103 ++++++++++++++- src/registerDynamicSymbol.c | 28 ++++ vignettes |only 52 files changed, 1897 insertions(+), 471 deletions(-)
Title: DDI with R
Description: Useful functions for various DDI (Data Documentation Initiative)
related inputs and outputs. Converts data files to and from DDI, SPSS,
Stata, SAS, R and Excel, including user declared missing values.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between DDIwR versions 0.19 dated 2024-12-10 and 0.20 dated 2026-08-21
DESCRIPTION | 18 MD5 | 169 ++ NAMESPACE | 28 R/DDI_Codebook_2.6.R | 3094 ++++++++++++++++++++++++------------------------- R/DDIwR_package.R | 52 R/children.R | 649 +++++++++- R/convert.R | 336 +++-- R/exportCodebook.R | 162 ++ R/getCodebook.R | 295 ++++ R/internals.R | 1377 +++++++++++++++++---- R/makeCategories.R | 26 R/makeDataNotes.R | 26 R/makeElement.R | 26 R/onAttach.R | 28 R/readstat_internal.R |only R/recodeCharcat.R | 87 - R/recodeMissings.R | 568 +++----- R/searchFor.R | 26 R/setupfile.R | 45 R/showDetails.R | 26 R/testValid.R | 26 R/updateCodebook.R | 28 R/updateSchema.R |only cleanup |only configure |only inst/ChangeLog | 297 ++-- man/DDI-children.Rd | 42 man/DDIwR_internal.Rd | 50 man/DDIwR_package.Rd | 12 man/buildDictionary.Rd |only man/convert.Rd | 45 man/exportCodebook.Rd | 2 man/getCodebook.Rd | 23 man/recodeCharcat.Rd | 5 man/recodeMissings.Rd | 76 - man/updateSchema.Rd |only src |only 37 files changed, 4976 insertions(+), 2668 deletions(-)
Title: Assessment Tools for Regression Models with Discrete and
Semicontinuous Outcomes
Description: Provides assessment tools for regression models with discrete and
semicontinuous outcomes. The implemented methods are described in
Yang (2021) <doi:10.1080/10618600.2021.1910042>,
Yang (2024) <doi:10.1080/10618600.2024.2303336>,
Yang (2024) <doi:10.1093/biomtc/ujae007>, and
Yang (2026) <doi:10.1002/cjs.70046>. It calculates double probability integral transform (DPIT) residuals and constructs QQ plots, ordered curves, quasi-empirical residual distribution functions, and formal goodness-of-fit tests.
Author: Lu Yang [aut],
Jeonghwan Lee [cre, aut]
Maintainer: Jeonghwan Lee <lee03938@umn.edu>
Diff between assessor versions 1.3.1 dated 2026-04-20 and 1.3.2 dated 2026-08-21
DESCRIPTION | 13 - MD5 | 75 +++---- NAMESPACE | 6 R/LGPIF.R | 85 ++++---- R/bballHR.R | 2 R/dpit_2pm.R | 179 +++++++++--------- R/dpit_binomial.R | 33 +-- R/dpit_glm.R | 102 +--------- R/dpit_helper.R | 191 ++++++++++++++++++- R/dpit_main.R | 77 ++++--- R/dpit_nb.R | 29 +- R/dpit_ordinal.R | 66 ++++-- R/dpit_pois.R | 24 -- R/dpit_tobit.R | 92 +++++---- R/dpit_tweedie.R | 24 -- R/dpit_zeroinfl.R | 21 -- R/dpit_znb.R | 28 +- R/dpit_zpois.R | 33 +-- R/gof_calc.R | 513 ++++++++++++++-------------------------------------- R/gof_main.R | 74 ++++--- R/ord_curve.R | 61 ++++-- R/quasi.R | 32 --- R/quasi_func.R | 9 man/LGPIF.Rd | 84 ++++---- man/bballHR.Rd | 2 man/dpit-methods.Rd |only man/dpit.Rd | 75 +++---- man/dpit_2pm.Rd | 39 +-- man/dpit_bin.Rd | 30 --- man/dpit_nb.Rd | 28 -- man/dpit_ordi.Rd | 31 +-- man/dpit_pois.Rd | 24 -- man/dpit_tobit.Rd | 36 +-- man/dpit_tweedie.Rd | 24 -- man/dpit_znb.Rd | 28 -- man/dpit_zpois.Rd | 32 +-- man/gof_disc.Rd | 19 + man/ord_curve.Rd | 15 - man/quasi_plot.Rd | 14 - 39 files changed, 1025 insertions(+), 1225 deletions(-)
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'DDIwR', 'QCA' and 'venn'.
Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts
information (set names, set values) from those expressions. Other functions
perform various other checks if possibly numeric (even if all numbers reside
in a character vector) and coerce to numeric, or check if the numbers are
whole. It also offers, among many others, a highly versatile recoding
routine and some more flexible alternatives to the base functions 'with()'
and 'within()'.
SOP simplification functions in this package use related minimization from
package 'QCA', which is recommended to be installed despite not being listed
in the Imports field, due to circular dependency issues.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.40 dated 2026-03-27 and 0.41 dated 2026-08-21
admisc-0.40/admisc/src/Makevars |only admisc-0.41/admisc/DESCRIPTION | 9 admisc-0.41/admisc/MD5 | 150 ++++++++-------- admisc-0.41/admisc/NAMESPACE | 1 admisc-0.41/admisc/R/admisc_internal.R | 1 admisc-0.41/admisc/R/admisc_package.R | 8 admisc-0.41/admisc/R/asNumeric.R | 15 + admisc-0.41/admisc/R/asSOP.R | 4 admisc-0.41/admisc/R/brackets.R | 58 +++++- admisc-0.41/admisc/R/change.R | 28 ++- admisc-0.41/admisc/R/checkMV.R | 26 ++ admisc-0.41/admisc/R/checkValid.R | 13 + admisc-0.41/admisc/R/classify.R | 1 admisc-0.41/admisc/R/coerceMode.R | 7 admisc-0.41/admisc/R/combnk.R | 10 + admisc-0.41/admisc/R/compute.R | 61 ++++++ admisc-0.41/admisc/R/dimnames.R | 2 admisc-0.41/admisc/R/equality.R | 16 + admisc-0.41/admisc/R/expand.R | 60 ++++++ admisc-0.41/admisc/R/export.R | 22 ++ admisc-0.41/admisc/R/factorize.R | 117 ++++++++++++ admisc-0.41/admisc/R/frelevel.R | 4 admisc-0.41/admisc/R/frev.R | 2 admisc-0.41/admisc/R/getInfo.R | 28 +++ admisc-0.41/admisc/R/getLevels.R | 13 + admisc-0.41/admisc/R/getMatrix.R | 9 admisc-0.41/admisc/R/getName.R | 41 ++++ admisc-0.41/admisc/R/inside.R | 65 ++++++- admisc-0.41/admisc/R/intersection.R | 63 ++++++ admisc-0.41/admisc/R/invert.R | 66 ++++++- admisc-0.41/admisc/R/mvSOP.R | 22 ++ admisc-0.41/admisc/R/numdec.R | 46 ++++ admisc-0.41/admisc/R/onLoad.R | 1 admisc-0.41/admisc/R/overwrite.R | 1 admisc-0.41/admisc/R/pad.R | 5 admisc-0.41/admisc/R/permutations.R | 2 admisc-0.41/admisc/R/possibleNumeric.R | 20 +- admisc-0.41/admisc/R/prettyString.R | 15 + admisc-0.41/admisc/R/prettyTable.R | 11 - admisc-0.41/admisc/R/print.R | 74 ++++++++ admisc-0.41/admisc/R/recode.R | 102 ++++++++++- admisc-0.41/admisc/R/recreate.R | 62 ++++++ admisc-0.41/admisc/R/reload.R | 3 admisc-0.41/admisc/R/replaceText.R | 46 ++++ admisc-0.41/admisc/R/scan.clipboard.R | 9 admisc-0.41/admisc/R/simplify.R | 34 +++ admisc-0.41/admisc/R/sopos.R | 54 +++++ admisc-0.41/admisc/R/sortExpressions.R | 4 admisc-0.41/admisc/R/stopError.R | 17 + admisc-0.41/admisc/R/string.R | 127 +++++++++++++ admisc-0.41/admisc/R/tagged.R | 11 + admisc-0.41/admisc/R/tilde.R | 6 admisc-0.41/admisc/R/translate.R | 169 +++++++++++++++++- admisc-0.41/admisc/R/tryCatchWEM.R | 67 +++++-- admisc-0.41/admisc/R/unicode.R | 7 admisc-0.41/admisc/R/unload.R | 4 admisc-0.41/admisc/R/update.R | 5 admisc-0.41/admisc/R/using.R | 155 ++++++++++++++++ admisc-0.41/admisc/R/validateNames.R | 9 admisc-0.41/admisc/R/verify.R | 12 + admisc-0.41/admisc/R/wholeNumeric.R | 12 + admisc-0.41/admisc/R/write.clipboard.R | 1 admisc-0.41/admisc/R/writePIs.R | 16 + admisc-0.41/admisc/build/partial.rdb |binary admisc-0.41/admisc/inst/ChangeLog | 6 admisc-0.41/admisc/man/admisc-package.Rd |only admisc-0.41/admisc/man/admisc_internal.Rd | 1 admisc-0.41/admisc/man/admisc_package.Rd | 7 admisc-0.41/admisc/man/brackets.Rd | 16 - admisc-0.41/admisc/man/factorize.Rd | 3 admisc-0.41/admisc/man/inside.Rd | 2 admisc-0.41/admisc/src/Makevars.win | 4 admisc-0.41/admisc/src/admisc.c | 44 +++- admisc-0.41/admisc/src/admisc.h | 28 +++ admisc-0.41/admisc/src/registerDynamicSymbol.c | 28 +++ admisc-0.41/admisc/src/utils.c | 231 ++++++++++++++++++++----- admisc-0.41/admisc/src/utils.h | 28 +++ 77 files changed, 2169 insertions(+), 258 deletions(-)
Title: Connectivity Corridor Optimization for Raster and Vector Data
Description: Standalone R implementation of habitat connectivity corridor
optimization for raster and vector workflows. Supports scenario-based
planning with budget-constrained optimization, optional impassable
areas, packaged parity fixtures, and comparative before-and-after
connectivity metrics. The package exposes structural,
movement-oriented, and species-oriented strategies in a reproducible
workflow aligned with a companion GIS plugin while avoiding a
desktop GIS dependency.
Author: Benjamin Bishop [aut, cre],
SORUS Consulting LLC [fnd, cph]
Maintainer: Benjamin Bishop <benjamin.bishop@sorusconsultingllc.com>
Diff between terralink versions 1.8.0 dated 2026-05-12 and 1.8.2 dated 2026-08-21
DESCRIPTION | 6 - MD5 | 40 ++++++----- NEWS.md | 13 +++ R/connectivity_metrics.R | 77 +++++++++++++++------ R/optimization.R | 16 ++-- R/raster_analysis.R | 16 +++- R/raster_utils.R | 9 +- R/terralink.R | 8 +- R/vector_analysis.R | 120 +++++++++++++++++++++++++++++++-- README.md | 6 - inst/doc/terralink-intro.Rmd | 4 - inst/doc/terralink-intro.html | 8 +- inst/extdata/impassable.gpkg |binary inst/extdata/patches.gpkg |binary inst/extdata/synthetic_impassable.gpkg |binary inst/extdata/synthetic_patches.gpkg |binary inst/scripts |only man/terralink_raster.Rd | 4 - man/terralink_vector.Rd | 4 - vignettes/terralink-intro.Rmd | 4 - 20 files changed, 260 insertions(+), 75 deletions(-)
Title: Tests of Multispecies Coalescent Gene Tree Simulator Output
Description: Statistical tests for validating multispecies coalescent gene tree simulators, using pairwise distances and rooted triple counts. See Allman ES, Baños HD, Rhodes JA 2023. Testing multispecies coalescent simulators using summary statistics, IEEE/ACM Trans Comput Biol Bioinformat, 20(2):1613–1618. <doi:10.1109/TCBB.2022.3177956>.
Author: Elizabeth Allman [aut, cre, cph],
Hector Banos [aut, cph],
John Rhodes [aut, cph]
Maintainer: Elizabeth Allman <e.allman@alaska.edu>
Diff between MSCsimtester versions 1.1 dated 2025-06-02 and 1.2 dated 2026-08-21
MSCsimtester-1.1/MSCsimtester/man/MSCsimtester.Rd |only MSCsimtester-1.2/MSCsimtester/DESCRIPTION | 8 ++++---- MSCsimtester-1.2/MSCsimtester/MD5 | 12 +++++++----- MSCsimtester-1.2/MSCsimtester/NAMESPACE | 8 +++++--- MSCsimtester-1.2/MSCsimtester/NEWS.md |only MSCsimtester-1.2/MSCsimtester/R/MSCsimtester.R | 9 +++------ MSCsimtester-1.2/MSCsimtester/build/partial.rdb |binary MSCsimtester-1.2/MSCsimtester/inst/extdata |only MSCsimtester-1.2/MSCsimtester/man/MSCsimtester-package.Rd |only 9 files changed, 19 insertions(+), 18 deletions(-)
Title: Functional Programming with Parallelism and Progress Tracking
Description: Provides functional tools such as fmap(), fwalk(), and fapply()
to iterate over vectors, data frames, or grouped data with optional parallelism
and real-time progress tracking. Progress updates now reflect completed tasks
across sequential, multicore, and cluster-backed execution. Designed for
readable and reproducible workflows, including support for Monte Carlo
simulations and benchmarking.
Author: Imad El Badisy [aut, cre]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
Diff between functionals versions 0.5.0 dated 2025-07-18 and 0.5.1 dated 2026-08-21
DESCRIPTION | 21 +-- MD5 | 40 +++--- NAMESPACE | 1 NEWS.md |only R/fapply.R | 84 ++++++++----- R/floop.R | 3 R/fmap.R | 8 - R/fmapc.R | 4 R/fmapg.R | 3 R/fmapn.R | 12 - R/frepeat.R | 13 +- R/helpers.R | 208 ++++++++++++++++++++++++++++++---- README.md | 49 +++++++- man/fapply.Rd | 9 + man/floop.Rd | 3 man/fmap.Rd | 6 man/fmapc.Rd | 4 man/fmapg.Rd | 3 man/fmapn.Rd | 12 - man/frepeat.Rd | 13 +- man/functionals-package.Rd | 1 tests/testthat/test-progress-system.R |only 22 files changed, 380 insertions(+), 117 deletions(-)
Title: A Workflow for Statistical Testing and Interpretation
Description: Provides a unified workflow for choosing, running, and
interpreting common statistical tests, from group comparisons and
analysis of variance to regression, survival analysis, and diagnostic and
agreement statistics. The package combines assumption checks, test
selection, effect sizes, formatted results, plain-language interpretation,
and a sample-size planning module covering continuous, binary, survival,
ordinal, bioequivalence, and precision-based designs. Implemented methods
follow standard references
including Casella and Berger (2002, ISBN:9780534243128), Hollander et al.
(2013, ISBN:9781118553299), Agresti (2013, ISBN:9780470463635), Cohen
(1988, ISBN:9780805802832), Hosmer, Lemeshow and Sturdivant (2013,
ISBN:9780470582473), and Julious (2010, ISBN:9781584887393).
Author: Imad El Badisy [aut, cre]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
Diff between testflow versions 0.9.0 dated 2026-07-17 and 1.0.0 dated 2026-08-21
testflow-0.9.0/testflow/inst/doc/effect-size-formulas.R |only testflow-0.9.0/testflow/inst/doc/effect-size-formulas.Rmd |only testflow-0.9.0/testflow/inst/doc/effect-size-formulas.pdf |only testflow-0.9.0/testflow/inst/doc/statistical-test-workflows.R |only testflow-0.9.0/testflow/inst/doc/statistical-test-workflows.Rmd |only testflow-0.9.0/testflow/inst/doc/statistical-test-workflows.pdf |only testflow-0.9.0/testflow/vignettes/effect-size-formulas.Rmd |only testflow-0.9.0/testflow/vignettes/statistical-test-workflows.Rmd |only testflow-1.0.0/testflow/DESCRIPTION | 28 testflow-1.0.0/testflow/MD5 | 64 - testflow-1.0.0/testflow/NAMESPACE | 32 testflow-1.0.0/testflow/NEWS.md | 93 + testflow-1.0.0/testflow/R/sample_size.R | 586 +++++++++- testflow-1.0.0/testflow/R/sumtab.R | 21 testflow-1.0.0/testflow/R/test_agreement.R | 39 testflow-1.0.0/testflow/R/testflow-package.R |only testflow-1.0.0/testflow/build/vignette.rds |binary testflow-1.0.0/testflow/inst/doc/getting-started.pdf |binary testflow-1.0.0/testflow/inst/doc/sample-size-api-reference.R | 23 testflow-1.0.0/testflow/inst/doc/sample-size-api-reference.Rmd | 69 - testflow-1.0.0/testflow/inst/doc/sample-size-api-reference.pdf |binary testflow-1.0.0/testflow/inst/doc/sample-size-planning.R | 32 testflow-1.0.0/testflow/inst/doc/sample-size-planning.Rmd | 103 + testflow-1.0.0/testflow/inst/doc/sample-size-planning.pdf |binary testflow-1.0.0/testflow/inst/doc/scientific-validation.R |only testflow-1.0.0/testflow/inst/doc/scientific-validation.Rmd |only testflow-1.0.0/testflow/inst/doc/scientific-validation.pdf |only testflow-1.0.0/testflow/inst/doc/testflow-complete-reference.R |only testflow-1.0.0/testflow/inst/doc/testflow-complete-reference.Rmd |only testflow-1.0.0/testflow/inst/doc/testflow-complete-reference.pdf |only testflow-1.0.0/testflow/inst/validation |only testflow-1.0.0/testflow/man/print.summary.sample_size.Rd |only testflow-1.0.0/testflow/man/print.testflow_sumtab.Rd |only testflow-1.0.0/testflow/man/sample_size_bioequivalence.Rd | 38 testflow-1.0.0/testflow/man/sample_size_precision.Rd | 117 + testflow-1.0.0/testflow/man/test_agreement.Rd | 27 testflow-1.0.0/testflow/man/testflow-package.Rd |only testflow-1.0.0/testflow/tests/testthat/test-sample-size-precision.R |only testflow-1.0.0/testflow/tests/testthat/test-sample-size.R | 89 + testflow-1.0.0/testflow/tests/testthat/test-test-agreement.R | 32 testflow-1.0.0/testflow/vignettes/sample-size-api-reference.Rmd | 69 - testflow-1.0.0/testflow/vignettes/sample-size-planning.Rmd | 103 + testflow-1.0.0/testflow/vignettes/scientific-validation.Rmd |only testflow-1.0.0/testflow/vignettes/testflow-complete-reference.Rmd |only 44 files changed, 1365 insertions(+), 200 deletions(-)
Title: Fast Masked K-Nearest Neighbor Imputation
Description: Fast masked KNN imputation for tabular data with support for single and multiple imputation.
Author: Imad El Badisy [aut, cre]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
Diff between missknn versions 1.0.0 dated 2026-07-24 and 1.1.2 dated 2026-08-21
DESCRIPTION | 7 + MD5 | 39 ++++++--- R/RcppExports.R | 16 ++-- R/internal.R | 80 ++++++++++++++++++-- R/missknn.R | 16 +++- README.md | 27 ++++++ inst/benchmark/benchmark_bio.R |only inst/benchmark/benchmark_real.R | 6 - inst/benchmark/data |only inst/benchmark/load_bio_datasets.R |only inst/benchmark/output/bio_data_benchmark_report.md |only inst/benchmark/output/bio_data_nrmse_plot.png |only inst/benchmark/output/bio_data_results.csv |only inst/benchmark/output/bio_data_speed_plot.png |only inst/benchmark/output/real_data_benchmark_report.md | 42 +++++----- inst/benchmark/output/real_data_bign_results.csv | 4 - inst/benchmark/output/real_data_nrmse_plot.png |binary inst/benchmark/output/real_data_results.csv | 30 +++---- inst/benchmark/output/real_data_speed_plot.png |binary man/missknn-package.Rd | 8 ++ man/missknn.Rd | 10 ++ src/RcppExports.cpp | 40 ++++++---- src/missknn.cpp | 73 ++++++++++++++++-- 23 files changed, 296 insertions(+), 102 deletions(-)
Title: Compact Multiple Imputation, Assessment, and Reporting
Description: Provides compact tools for missing-data analysis, including
artificial amputation, chained single and multiple imputation, statistical
and machine-learning-based imputation methods, diagnostic evaluation, and
post-imputation pooling.
Author: Imad El Badisy [aut, cre]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
Diff between mimar versions 0.8.0 dated 2026-06-09 and 1.0.0 dated 2026-08-21
DESCRIPTION | 21 - MD5 | 55 +-- NAMESPACE | 10 NEWS.md | 38 ++ R/ampute.R | 7 R/classes.R | 4 R/complete.R | 8 R/describe.R | 4 R/evaluate.R | 13 R/generics.R | 3 R/impute.R | 19 - R/impute_chained.R | 42 ++ R/imputer.R | 63 ++- R/plot.R | 11 R/pool.R | 154 +++++++- R/pool_models.R |only R/utils.R | 24 - README.md | 401 +++++++++++++++++---- inst/doc/mimar.R | 19 + inst/doc/mimar.Rmd | 69 +++ inst/doc/mimar.html | 821 +++++++++++++++++++++++++++++++-------------- man/impute.Rd | 7 man/imputer_registry.Rd | 4 man/pool.Rd | 3 man/pool_clogit.Rd |only man/pool_coxph.Rd |only man/pool_glm.Rd |only man/pool_lm.Rd |only man/pool_survmat.Rd |only man/pool_survreg.Rd |only tests/testthat/test-core.R | 218 ++++++++++- vignettes/mimar.Rmd | 69 +++ 32 files changed, 1623 insertions(+), 464 deletions(-)
Title: Monte Carlo Statistical Simulation Tools Using a Functional
Approach
Description: A lightweight package designed to facilitate statistical
simulations through functional programming. It centralizes the simulation process into a single
higher-order function, enhancing manageability and usability. The package includes ready-to-use
functions for common simulation targets.
Author: Imad El Badisy [aut, cre, cph]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
Diff between mcstatsim versions 0.5.0 dated 2024-07-29 and 0.5.1 dated 2026-08-21
DESCRIPTION | 27 ++++++++++++++------------- MD5 | 12 ++++++------ NAMESPACE | 2 -- NEWS.md | 11 +++++++++++ R/mcpmap.R | 13 +++---------- README.md | 13 +++++++++---- man/mcpmap.Rd | 4 ++-- 7 files changed, 45 insertions(+), 37 deletions(-)
Title: Dense Neural Networks for Tabular Classification and Regression
Description: Provides dense feed-forward neural network models for
tabular regression and classification using 'torch'. The package supports
modern extensions around dense neural network blocks, including dropout,
batch normalization, residual connections, gated blocks, and optional
input projection.
Author: Imad El Badisy [aut, cre]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
Diff between densemlp versions 0.5.0 dated 2026-08-08 and 0.6.0 dated 2026-08-21
DESCRIPTION | 14 ++-- MD5 | 18 +++--- NAMESPACE | 2 NEWS.md |only R/cv.R |only README.md | 28 +++++++++ inst/doc/getting-started.Rmd | 123 ++++++++++++++++++++++++++++++++++++++++++ inst/doc/getting-started.pdf |binary man/cv_densemlp.Rd |only man/densemlp-package.Rd | 4 - tests/testthat/test-cv.R |only vignettes/getting-started.Rmd | 123 ++++++++++++++++++++++++++++++++++++++++++ 12 files changed, 296 insertions(+), 16 deletions(-)
Title: Bayesian Additive Regression Trees with Stan-Sampled Parametric
Extensions
Description: Fits semiparametric linear and multilevel models with non-parametric additive Bayesian additive regression tree (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) components and Stan (Stan Development Team (2021) <https://mc-stan.org/>) sampled parametric ones. Multilevel models can be expressed using 'lme4' syntax (Bates, Maechler, Bolker, and Walker (2015) <doi:10.18637/jss.v067.i01>).
Author: Vincent Dorie [aut, cre] ,
Ben Goodrich [ctb] ,
Jonah Gabry [ctb] ,
Imad Ali [ctb] ,
Sam Brilleman [ctb] ,
Paul-Christian Burkner [ctb] ,
Joshua Pritikin [ctb] ,
Andrew Gelman [ctb] ,
Bob Carpenter [ctb] ,
Matt Hoffman [ctb] ,
Daniel Lee [ctb] ,
Mich [...truncated...]
Maintainer: Vincent Dorie <vdorie@gmail.com>
Diff between stan4bart versions 0.0-12 dated 2026-03-19 and 0.0-13 dated 2026-08-21
stan4bart-0.0-12/stan4bart/src/stan_files/continuous_new.hpp |only stan4bart-0.0-13/stan4bart/DESCRIPTION | 10 ++-- stan4bart-0.0-13/stan4bart/MD5 | 7 +-- stan4bart-0.0-13/stan4bart/R/generics.R | 2 stan4bart-0.0-13/stan4bart/src/init.cpp | 25 ++++++----- 5 files changed, 24 insertions(+), 20 deletions(-)
Title: Spatial Logistic Gaussian Process for Field Density Estimation
Description: Provides tools for conditional and spatially dependent
density estimation using Spatial Logistic Gaussian Processes (SLGPs).
The approach represents probability densities through finite-rank
Gaussian process priors transformed via a spatial logistic density
transformation, enabling flexible non-parametric modeling of
heterogeneous data. Functionality includes density prediction,
quantile and moment estimation, sampling methods, and preprocessing
routines for basis functions. Applications arise in spatial statistics,
machine learning, and uncertainty quantification.
The methodology builds on the framework of Leonard (1978)
<doi:10.1111/j.2517-6161.1978.tb01655.x>, Lenk (1988) <doi:10.1080/01621459.1988.10478625>,
Tokdar (2007) <doi:10.1198/106186007X210206>, Tokdar (2010) <doi:10.1214/10-BA605>,
and is further aligned with recent developments
in Bayesian non-parametric modelling: see Gautier (2023) <https://boristheses.unibe.ch/4377/>,
and Gautier (2025) &l [...truncated...]
Author: Athenais Gautier [aut, cre]
Maintainer: Athenais Gautier <athenais.gautier@onera.fr>
Diff between SLGP versions 1.0.2 dated 2026-02-17 and 1.1.0 dated 2026-08-21
SLGP-1.0.2/SLGP/inst/extdata |only SLGP-1.1.0/SLGP/DESCRIPTION | 6 SLGP-1.1.0/SLGP/MD5 | 68 +- SLGP-1.1.0/SLGP/NAMESPACE | 13 SLGP-1.1.0/SLGP/R/PredictAndSimulate.R | 381 +++++------ SLGP-1.1.0/SLGP/R/SLGP-package.R | 89 ++ SLGP-1.1.0/SLGP/R/SLGPclass.R | 2 SLGP-1.1.0/SLGP/R/datamanagement.R | 16 SLGP-1.1.0/SLGP/R/methods.R |only SLGP-1.1.0/SLGP/R/slgp.R | 209 +++--- SLGP-1.1.0/SLGP/inst/doc/IntroductionSLGP.R | 337 ++++++---- SLGP-1.1.0/SLGP/inst/doc/IntroductionSLGP.Rmd | 382 +++++++---- SLGP-1.1.0/SLGP/inst/doc/IntroductionSLGP.html | 780 ++++++++++++++---------- SLGP-1.1.0/SLGP/inst/doc/SLGPdiscrete.R | 243 +++---- SLGP-1.1.0/SLGP/inst/doc/SLGPdiscrete.Rmd | 282 ++++---- SLGP-1.1.0/SLGP/inst/doc/SLGPdiscrete.html | 375 ++++++----- SLGP-1.1.0/SLGP/man/SLGP-class.Rd | 2 SLGP-1.1.0/SLGP/man/SLGP-package.Rd | 79 ++ SLGP-1.1.0/SLGP/man/coef-SLGP-method.Rd |only SLGP-1.1.0/SLGP/man/formula-SLGP-method.Rd |only SLGP-1.1.0/SLGP/man/nobs-SLGP-method.Rd |only SLGP-1.1.0/SLGP/man/plot-SLGP-missing-method.Rd |only SLGP-1.1.0/SLGP/man/pre_comput_NN.Rd | 8 SLGP-1.1.0/SLGP/man/pre_comput_WNN.Rd | 6 SLGP-1.1.0/SLGP/man/pre_comput_nothing.Rd | 2 SLGP-1.1.0/SLGP/man/predict-SLGP-method.Rd |only SLGP-1.1.0/SLGP/man/predictSLGP_cdf.Rd | 54 - SLGP-1.1.0/SLGP/man/predictSLGP_moments.Rd | 54 - SLGP-1.1.0/SLGP/man/predictSLGP_newNode.Rd | 54 - SLGP-1.1.0/SLGP/man/predictSLGP_quantiles.Rd | 58 - SLGP-1.1.0/SLGP/man/print-SLGP-method.Rd |only SLGP-1.1.0/SLGP/man/print.summary.SLGP.Rd |only SLGP-1.1.0/SLGP/man/retrainSLGP.Rd | 181 ++--- SLGP-1.1.0/SLGP/man/sampleSLGP.Rd | 48 - SLGP-1.1.0/SLGP/man/simulate-SLGP-method.Rd |only SLGP-1.1.0/SLGP/man/slgp.Rd | 87 +- SLGP-1.1.0/SLGP/man/summary-SLGP-method.Rd |only SLGP-1.1.0/SLGP/man/update-SLGP-method.Rd |only SLGP-1.1.0/SLGP/vignettes/IntroductionSLGP.Rmd | 382 +++++++---- SLGP-1.1.0/SLGP/vignettes/SLGPdiscrete.Rmd | 282 ++++---- SLGP-1.1.0/SLGP/vignettes/references.bib |only 41 files changed, 2420 insertions(+), 2060 deletions(-)
Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <https://curl.se/libcurl/>
Provides functions to allow one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Author: CRAN Team [ctb] ,
Duncan Temple Lang [aut] ,
Ivan Krylov [cre]
Maintainer: Ivan Krylov <ikrylov@disroot.org>
Diff between RCurl versions 1.98-1.19 dated 2026-06-03 and 1.98-1.20 dated 2026-08-21
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- R/curlAuthConstants.R | 2 +- inst/NEWS.Rd |only inst/doc/philosophy.html | 8 ++++---- inst/doc/withCookies.html | 12 ++++++------ man/base64.Rd | 2 ++ man/curlError.Rd | 2 +- man/getURIAsynchronous.Rd | 4 ++++ 9 files changed, 29 insertions(+), 22 deletions(-)
Title: Quality Report Generation for MaxQuant and mzTab Results
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.
Author: Chris Bielow [aut, cre],
Juliane Schmachtenberg [ctb],
Swenja Wagner [ctb],
Patricia Scheil [ctb],
Tom Waschischek [ctb],
Guido Mastrobuoni [dtc, rev]
Maintainer: Chris Bielow <chris.bielow@bsc.fu-berlin.de>
Diff between PTXQC versions 1.1.5 dated 2026-04-23 and 1.1.6 dated 2026-08-21
DESCRIPTION | 8 - MD5 | 44 +++++----- NEWS | 3 R/MQDataReader.R | 94 +++++++++++---------- R/fcn_MQ.R | 13 +- R/fcn_qualities.R | 114 +++++++++++++------------- R/qcMetric.R | 18 ++-- R/qcMetric_EVD.R | 4 R/qcMetric_MSMS.R | 4 R/qcMetric_MSMSScans.R | 2 README.md | 2 inst/doc/PTXQC-Basic_Guide_for_R_users.html | 6 - inst/doc/PTXQC-CustomizeReport.html | 6 - inst/doc/PTXQC-DragNDrop.html | 6 - inst/doc/PTXQC-FAQ.html | 6 - inst/doc/PTXQC-Input_And_Output_Data.html | 6 - inst/doc/PTXQC-ListOfMetrics.html | 31 +++---- man/MQDataReader-class.Rd | 122 +++++++++++++++------------- man/qcMetric-class.Rd | 26 +++-- man/qualCentered.Rd | 2 man/qualGaussDev.Rd | 2 man/qualHighest.Rd | 4 man/qualUniform.Rd | 12 +- 23 files changed, 287 insertions(+), 248 deletions(-)
Title: Download and Manage Optional Package Data
Description: Manage optional data for your package. The data can be hosted anywhere, and you have to give a Uniform Resource Locator (URL) for each file. File integrity checks are supported. This is useful for package authors who need to ship more than the 5 Megabyte of data currently allowed by the the Comprehensive R Archive Network (CRAN). Download functions are supposed to be called by users in interactive sessions only.
Author: Tim Schaefer [aut, cre]
Maintainer: Tim Schaefer <ts+code@rcmd.org>
Diff between pkgfilecache versions 0.1.5 dated 2024-02-02 and 0.2.0 dated 2026-08-21
DESCRIPTION | 16 LICENSE | 4 MD5 | 64 - NAMESPACE | 22 R/filecache.R | 985 ++++++++-------- build/vignette.rds |binary inst/doc/pkgfilecache.R | 178 +- inst/doc/pkgfilecache.Rmd | 418 +++--- inst/doc/pkgfilecache.html | 1197 ++++++++++---------- inst/extdata/file1.txt | 2 inst/extdata/file2.txt | 2 man/are_files_available.Rd | 52 man/download_files_with_md5_mismatch.Rd | 52 man/ensure_files_available.Rd | 98 - man/erase_file_cache.Rd | 34 man/files_exist_md5.Rd | 40 man/flatten_filepath.Rd | 36 man/get_abs_filenames.Rd | 40 man/get_absolute_path_for_files.Rd | 50 man/get_cache_dir.Rd | 54 man/get_filepath.Rd | 52 man/get_pkg_info.Rd | 54 man/get_relative_file_subdir.Rd | 40 man/list_available.Rd | 44 man/make_pgk_cache_subdir_for_all_relative_files.Rd | 34 man/make_pgk_cache_subdir_for_relative_file.Rd | 34 man/pick_cache_dir.Rd |only man/pkg_cache_dir_with_version.Rd |only man/remove_cached_files.Rd | 48 tests/testthat.R | 8 tests/testthat/setup.R |only tests/testthat/teardown-cran.R | 14 tests/testthat/test-download-rcmd-org.R |only tests/testthat/test-filecache.R | 778 +++++++----- vignettes/pkgfilecache.Rmd | 418 +++--- 35 files changed, 2519 insertions(+), 2349 deletions(-)
Title: Bayesian Estimation and Forecasting of Age-Specific Rates
Description: Fast Bayesian estimation and forecasting of age-specific
rates, probabilities, and means, based on 'Template Model Builder'.
Author: John Bryant [aut, cre],
Junni Zhang [aut],
Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>
Diff between bage versions 0.10.9 dated 2026-05-20 and 0.10.10 dated 2026-08-21
DESCRIPTION | 8 +- MD5 | 32 +++++------ NAMESPACE | 14 ++-- NEWS.md | 11 +++ R/bage_mod-methods.R | 24 ++------ R/forecast.R | 36 ++++++++++++ R/util.R | 25 -------- README.md | 39 +++---------- build/vignette.rds |binary inst/Matrix-version | 2 inst/TMB-version | 2 inst/doc/vig01_intro.html | 6 +- man/augment.bage_mod.Rd | 19 +----- man/replicate_data.Rd | 2 tests/testthat/test-bage_mod-methods.R | 91 +++++++++++++++++++++++++++++++- tests/testthat/test-forecast.R | 93 ++++++++++++++++++++++++++++++++- tests/testthat/test-util.R | 25 -------- 17 files changed, 285 insertions(+), 144 deletions(-)
Title: Tools for Parsing and Generating XML Within R and S-Plus
Description: Many approaches for both reading and
creating XML (and HTML) documents, both local
and accessible via HTTP or FTP. Also offers access to an
'XPath' "interpreter".
Author: CRAN Team [ctb] ,
Duncan Temple Lang [aut] ,
Tomas Kalibera [ctb],
Ivan Krylov [cre]
Maintainer: Ivan Krylov <ikrylov@disroot.org>
Diff between XML versions 3.99-0.23 dated 2026-03-20 and 3.99-0.24 dated 2026-08-21
XML-3.99-0.23/XML/R/DTD.R |only XML-3.99-0.23/XML/R/parseDTD.R |only XML-3.99-0.23/XML/man/dtdElement.Rd |only XML-3.99-0.23/XML/man/dtdElementValidEntry.Rd |only XML-3.99-0.23/XML/man/dtdIsAttribute.Rd |only XML-3.99-0.23/XML/man/dtdValidElement.Rd |only XML-3.99-0.23/XML/man/xmlContainsEntity.Rd |only XML-3.99-0.24/XML/ChangeLog | 5 + XML-3.99-0.24/XML/DESCRIPTION | 28 ++++---- XML-3.99-0.24/XML/MD5 | 90 ++++++++++++-------------- XML-3.99-0.24/XML/NAMESPACE | 26 +++---- XML-3.99-0.24/XML/R/XMLRErrorInfo.R | 4 - XML-3.99-0.24/XML/R/defunct.R |only XML-3.99-0.24/XML/R/parser.R | 2 XML-3.99-0.24/XML/R/xmlErrorEnums.R | 6 - XML-3.99-0.24/XML/man/AssignXMLNode.Rd | 3 XML-3.99-0.24/XML/man/XML-defunct.Rd | 19 ++++- XML-3.99-0.24/XML/man/XMLCodeFile-class.Rd | 10 ++ XML-3.99-0.24/XML/man/addChildren.Rd | 6 - XML-3.99-0.24/XML/man/append.XMLNode.Rd | 3 XML-3.99-0.24/XML/man/asXMLNode.Rd | 3 XML-3.99-0.24/XML/man/genericSAXHandlers.Rd | 3 XML-3.99-0.24/XML/man/getHTMLLinks.Rd | 2 XML-3.99-0.24/XML/man/getLineNumber.Rd | 3 XML-3.99-0.24/XML/man/getNodeSet.Rd | 3 XML-3.99-0.24/XML/man/length.XMLNode.Rd | 3 XML-3.99-0.24/XML/man/libxmlVersion.Rd | 3 XML-3.99-0.24/XML/man/names.XMLNode.Rd | 3 XML-3.99-0.24/XML/man/newXMLDoc.Rd | 5 - XML-3.99-0.24/XML/man/parseURI.Rd | 2 XML-3.99-0.24/XML/man/print.Rd | 2 XML-3.99-0.24/XML/man/readHTMLList.Rd | 2 XML-3.99-0.24/XML/man/saveXML.Rd | 2 XML-3.99-0.24/XML/man/supportsExpat.Rd | 3 XML-3.99-0.24/XML/man/xmlApply.Rd | 3 XML-3.99-0.24/XML/man/xmlAttributeType.Rd | 2 XML-3.99-0.24/XML/man/xmlDOMApply.Rd | 3 XML-3.99-0.24/XML/man/xmlElementsByTagName.Rd | 3 XML-3.99-0.24/XML/man/xmlEventHandler.Rd | 3 XML-3.99-0.24/XML/man/xmlGetAttr.Rd | 3 XML-3.99-0.24/XML/man/xmlName.Rd | 7 +- XML-3.99-0.24/XML/man/xmlNamespace.Rd | 3 XML-3.99-0.24/XML/man/xmlNode.Rd | 3 XML-3.99-0.24/XML/man/xmlOutput.Rd | 3 XML-3.99-0.24/XML/man/xmlRoot.Rd | 3 XML-3.99-0.24/XML/man/xmlSize.Rd | 4 - XML-3.99-0.24/XML/man/xmlSubset.Rd | 2 XML-3.99-0.24/XML/man/xmlTree.Rd | 5 - XML-3.99-0.24/XML/man/xmlTreeParse.Rd | 9 ++ XML-3.99-0.24/XML/man/xmlValue.Rd | 3 50 files changed, 155 insertions(+), 145 deletions(-)
Title: 'vcd' Extensions and Additions
Description: Provides additional data sets, methods and documentation to complement the 'vcd' package for Visualizing Categorical Data
and the 'gnm' package for Generalized Nonlinear Models.
In particular, 'vcdExtra' extends mosaic, assoc and sieve plots from 'vcd' to handle 'glm()' and 'gnm()' models and
adds a 3D version in 'mosaic3d'. Additionally, methods are provided for comparing and visualizing lists of
'glm' and 'loglm' objects. This package is now a support package for the book Friendly, M. and Meyer, D.
(2016, ISBN:978-1-4987-2583-5) 'Discrete Data Analysis with R: Visualization and Modeling Techniques for
Categorical and Count Data'. Recent work adds colorized tables of frequencies to highlight patterns of association,
association graphs to visualize conditional independence and a variety of new or improved statistical tests for
categorical data analysis.
Author: Michael Friendly [aut, cre] ,
David Meyer [ctb],
Achim Zeileis [ctb] ,
Duncan Murdoch [ctb],
Heather Turner [ctb] ,
David Firth [ctb],
Daniel Sabanes Bove [ctb] ,
Matt Kumar [ctb],
Shuguang Sun [ctb],
Gavin Klorfine [aut]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between vcdExtra versions 0.9.7 dated 2026-08-03 and 0.9.8 dated 2026-08-21
vcdExtra-0.9.7/vcdExtra/man/figures/logo-new.jpg |only vcdExtra-0.9.7/vcdExtra/man/figures/logo-old.png |only vcdExtra-0.9.8/vcdExtra/DESCRIPTION | 33 +- vcdExtra-0.9.8/vcdExtra/MD5 | 57 ++-- vcdExtra-0.9.8/vcdExtra/NAMESPACE | 168 +++++++------ vcdExtra-0.9.8/vcdExtra/NEWS.md | 41 +++ vcdExtra-0.9.8/vcdExtra/R/CMHtest.R | 7 vcdExtra-0.9.8/vcdExtra/R/Summarise.R | 14 - vcdExtra-0.9.8/vcdExtra/R/data.R | 22 + vcdExtra-0.9.8/vcdExtra/R/drop1.loglm.R |only vcdExtra-0.9.8/vcdExtra/R/logist_plot.R |only vcdExtra-0.9.8/vcdExtra/R/logseries.R | 2 vcdExtra-0.9.8/vcdExtra/R/vcdExtra-deprecated.R |only vcdExtra-0.9.8/vcdExtra/inst/doc/a1-creating.html | 8 vcdExtra-0.9.8/vcdExtra/inst/doc/a1a-convert-collapse.html | 2 vcdExtra-0.9.8/vcdExtra/inst/doc/a2-tests.html | 12 vcdExtra-0.9.8/vcdExtra/inst/doc/a3-loglinear.html | 4 vcdExtra-0.9.8/vcdExtra/inst/doc/a4-mosaics.html | 18 - vcdExtra-0.9.8/vcdExtra/inst/doc/a5-demo-housing.html | 10 vcdExtra-0.9.8/vcdExtra/inst/doc/a6-mobility.html | 18 - vcdExtra-0.9.8/vcdExtra/inst/doc/a7-continuous.html | 12 vcdExtra-0.9.8/vcdExtra/inst/doc/datasets.html | 4 vcdExtra-0.9.8/vcdExtra/inst/doc/tidyCats.html | 4 vcdExtra-0.9.8/vcdExtra/man/Donner.Rd | 12 vcdExtra-0.9.8/vcdExtra/man/Draft1970.Rd | 3 vcdExtra-0.9.8/vcdExtra/man/ICU.Rd | 7 vcdExtra-0.9.8/vcdExtra/man/Reinis.Rd | 152 +++++------ vcdExtra-0.9.8/vcdExtra/man/Summarise.Rd | 16 + vcdExtra-0.9.8/vcdExtra/man/drop1.loglm.Rd |only vcdExtra-0.9.8/vcdExtra/man/logist_plot.Rd |only vcdExtra-0.9.8/vcdExtra/man/logseries.Rd | 2 vcdExtra-0.9.8/vcdExtra/man/vcdExtra-deprecated.Rd |only vcdExtra-0.9.8/vcdExtra/tests/testthat/test-CMHtest.R | 14 + vcdExtra-0.9.8/vcdExtra/tests/testthat/test-logist_plot.R |only 34 files changed, 386 insertions(+), 256 deletions(-)
Title: Super Learner Prediction
Description: Implements the super learner prediction method and contains a
library of prediction algorithms to be used in the super learner.
Author: Eric Polley [aut, cre],
Erin LeDell [aut],
Chris Kennedy [aut],
Sam Lendle [ctb],
Mark van der Laan [aut, ths]
Maintainer: Eric Polley <epolley@uchicago.edu>
Diff between SuperLearner versions 2.0-40 dated 2025-12-21 and 2.0-41 dated 2026-08-21
SuperLearner-2.0-40/SuperLearner/man/predict.superlearner.Rd |only SuperLearner-2.0-41/SuperLearner/DESCRIPTION | 18 SuperLearner-2.0-41/SuperLearner/MD5 | 80 SuperLearner-2.0-41/SuperLearner/NAMESPACE | 2 SuperLearner-2.0-41/SuperLearner/R/SL.bartMachine.R | 2 SuperLearner-2.0-41/SuperLearner/R/SL.cforest.R | 2 SuperLearner-2.0-41/SuperLearner/R/SL.glmnet.R | 4 SuperLearner-2.0-41/SuperLearner/R/SL.kernelKnn.R | 4 SuperLearner-2.0-41/SuperLearner/R/SL.ksvm.R | 2 SuperLearner-2.0-41/SuperLearner/R/SL.xgboost.R | 4 SuperLearner-2.0-41/SuperLearner/R/plot.CV.SuperLearner.R | 2 SuperLearner-2.0-41/SuperLearner/build/vignette.rds |binary SuperLearner-2.0-41/SuperLearner/inst/NEWS | 7 SuperLearner-2.0-41/SuperLearner/inst/doc/Guide-to-SuperLearner.R | 204 -- SuperLearner-2.0-41/SuperLearner/inst/doc/Guide-to-SuperLearner.Rmd | 251 --- SuperLearner-2.0-41/SuperLearner/inst/doc/Guide-to-SuperLearner.html | 826 +++------- SuperLearner-2.0-41/SuperLearner/man/CV.SuperLearner.Rd | 2 SuperLearner-2.0-41/SuperLearner/man/SL.bartMachine.Rd | 21 SuperLearner-2.0-41/SuperLearner/man/SL.biglasso.Rd | 19 SuperLearner-2.0-41/SuperLearner/man/SL.cforest.Rd | 25 SuperLearner-2.0-41/SuperLearner/man/SL.glmnet.Rd | 20 SuperLearner-2.0-41/SuperLearner/man/SL.kernelKnn.Rd | 18 SuperLearner-2.0-41/SuperLearner/man/SL.ksvm.Rd | 26 SuperLearner-2.0-41/SuperLearner/man/SL.lda.Rd | 18 SuperLearner-2.0-41/SuperLearner/man/SL.qda.Rd | 18 SuperLearner-2.0-41/SuperLearner/man/SL.ranger.Rd | 21 SuperLearner-2.0-41/SuperLearner/man/SL.xgboost.Rd | 24 SuperLearner-2.0-41/SuperLearner/man/create.Learner.Rd | 12 SuperLearner-2.0-41/SuperLearner/man/create.SL.xgboost.Rd | 10 SuperLearner-2.0-41/SuperLearner/man/predict.SL.bartMachine.Rd | 3 SuperLearner-2.0-41/SuperLearner/man/predict.SL.glmnet.Rd | 3 SuperLearner-2.0-41/SuperLearner/man/predict.SL.lda.Rd | 10 SuperLearner-2.0-41/SuperLearner/man/predict.SL.qda.Rd | 10 SuperLearner-2.0-41/SuperLearner/man/predict.SL.ranger.Rd | 10 SuperLearner-2.0-41/SuperLearner/man/predict.SuperLearner.Rd |only SuperLearner-2.0-41/SuperLearner/tests/cran |only SuperLearner-2.0-41/SuperLearner/tests/testthat/test-SampleSplitSuperLearner.R |only SuperLearner-2.0-41/SuperLearner/tests/testthat/test-SuperLearner.R | 4 SuperLearner-2.0-41/SuperLearner/tests/testthat/test-createLearner.R |only SuperLearner-2.0-41/SuperLearner/tests/testthat/test-glmnet.R | 4 SuperLearner-2.0-41/SuperLearner/tests/testthat/test-kernelKnn.R | 4 SuperLearner-2.0-41/SuperLearner/tests/testthat/test-knn.R | 4 SuperLearner-2.0-41/SuperLearner/tests/testthat/test-randomForest.R |only SuperLearner-2.0-41/SuperLearner/vignettes/Guide-to-SuperLearner.Rmd | 251 --- 44 files changed, 782 insertions(+), 1163 deletions(-)
Title: Algorithms and Tools for Tabular Statistics and Hierarchical
Computations
Description: Includes general data manipulation functions, algorithms for statistical disclosure control (Langsrud, 2024) <doi:10.1007/978-3-031-69651-0_6> and functions for hierarchical computations by sparse model matrices (Langsrud, 2023) <doi:10.32614/RJ-2023-088>.
Author: Oeyvind Langsrud [aut, cre] ,
Daniel Lupp [aut] ,
Bjoern-Helge Mevik [ctb],
Vidar Norstein Klungre [rev] ,
Statistics Norway [cph]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 1.8.7 dated 2026-05-12 and 1.8.8 dated 2026-08-21
DESCRIPTION | 10 ++--- MD5 | 16 ++++----- NAMESPACE | 82 +++++++++++++++++++++++++---------------------- NEWS.md | 12 ++++++ R/convert_integer64.R | 4 +- R/dummy_aggregate.R | 10 +++++ R/model_aggregate.R | 1 man/convert_integer64.Rd | 4 +- man/dummy_aggregate.Rd | 6 +++ 9 files changed, 91 insertions(+), 54 deletions(-)
Title: General-Purpose Optimisation with the Self-Organising Migrating
Algorithm
Description: An R implementation of the Self-Organising Migrating Algorithm, a
general-purpose, stochastic optimisation algorithm. The approach is similar to
that of genetic algorithms, although it is based on the idea of a series of
"migrations" by a fixed set of individuals, rather than the development of
successive generations. It can be applied to any cost-minimisation problem
with a bounded parameter space, and is robust to local minima.
Author: Jon Clayden [cre, aut]
Maintainer: Jon Clayden <code@clayden.org>
Diff between soma versions 1.2.0 dated 2022-05-02 and 1.2.1 dated 2026-08-21
DESCRIPTION | 21 ++++++++++++++------- MD5 | 12 ++++++------ NEWS | 13 +++++++++++++ R/soma.R | 13 +++++++++++-- README.md | 14 +++++++------- inst/tinytest/test_soma.R | 27 +++++++++++++++++++++++++++ tools/figures/unnamed-chunk-5-1.png |binary 7 files changed, 78 insertions(+), 22 deletions(-)
Title: Safetensors File Format
Description: A file format for storing tensors that is secure (doesn't allow for
code execution), fast and simple to implement. 'safetensors' also enables cross
language and cross frameworks compatibility making it an ideal format for
storing machine learning model weights.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [aut],
Sebastian Fischer [ctb],
Posit [cph]
Maintainer: Tomasz Kalinowski <tomasz@posit.co>
Diff between safetensors versions 0.2.1 dated 2026-04-27 and 0.3.0 dated 2026-08-21
DESCRIPTION | 6 +-- MD5 | 16 +++++----- NEWS.md | 14 ++++++++ R/safetensors.R | 25 ++++++++++++--- R/torch.R | 6 +++ R/write.R | 58 ++++++++++++++++++++++++++++-------- README.md | 2 - tests/testthat/test-safetensors.R | 60 ++++++++++++++++++++++++++++++++++++++ tests/testthat/test-write.R | 19 ++++++++++++ 9 files changed, 175 insertions(+), 31 deletions(-)
Title: 'S7' Framework for Schema-Validated YAML Configuration
Description: Provides a generic framework for working with YAML (YAML
Ain't Markup Language) configuration files. Uses 'ajv' (Another JSON
Schema Validator) via 'V8' to validate configurations against JSON
Schema definitions. Configuration objects inherit from 'S7' classes
and base lists, supporting downstream extension through custom classes
and methods.
Author: Aksel Thomsen [aut, cre],
Matthew Phelps [aut],
Novo Nordisk A/S [cph],
Evgeny Poberezkin [cph] ,
Python Software Foundation [cph] ),
Vladimir Zapparov [cph] ,
Vincent Le Goff [cph] ,
Vsevolod Strukchinsky [cph]
Maintainer: Aksel Thomsen <oath@novonordisk.com>
Diff between S7schema versions 0.1.1 dated 2026-05-09 and 0.1.2 dated 2026-08-21
DESCRIPTION | 8 MD5 | 44 NEWS.md | 6 R/validator.R | 25 R/y_S7schema.R | 108 R/z_write.R | 9 build/vignette.rds |binary inst/WORDLIST | 1 inst/bundle.js | 4241 ++++++++++++++++---------------- inst/doc/S7schema.html | 18 inst/doc/use-in-package.html | 9 inst/examples/config.yml | 3 inst/examples/definitions.json | 4 man/S7schema.Rd | 13 man/reexports.Rd | 2 man/validate_config.Rd | 2 man/validator.Rd | 4 tests/testthat/input/simple.yml | 1 tests/testthat/input/simple_error.yml | 1 tests/testthat/schemas/definitions.json | 5 tests/testthat/test-validate-config.R | 44 tests/testthat/test-y_schema.R | 20 tests/testthat/test-z_write.R | 27 23 files changed, 2482 insertions(+), 2113 deletions(-)
Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal 'RPC' protocols and file formats. Additional documentation
is available in two included vignettes one of which corresponds to our 'JSS'
paper (2016, <doi:10.18637/jss.v071.i02>. A sufficiently recent version of
'Protocol Buffers' library is required; currently version 3.3.0 from 2017
is the tested minimum.
Author: Romain Francois [aut] ,
Dirk Eddelbuettel [aut, cre] ,
Murray Stokely [aut] ,
Jeroen Ooms [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RProtoBuf versions 0.4.27 dated 2026-04-26 and 0.4.28 dated 2026-08-21
ChangeLog | 49 +++++++++++++++++++++++++++++++++ DESCRIPTION | 8 ++--- MD5 | 35 ++++++++++++----------- R/00classes.R | 2 - R/rexp_obj.R | 4 ++ R/serialize_pb.R | 4 +- R/wrapper_ServiceDescriptor.R | 8 +++-- build/vignette.rds |binary configure | 18 ++++++------ configure.ac | 2 - inst/NEWS.Rd | 9 ++++++ inst/doc/RProtoBuf-paper.pdf |binary inst/tinytest/test_servicedescriptor.R |only man/serialize_pb.Rd | 5 ++- man/type.Rd | 5 ++- src/RcppMacros.h | 9 +++++- src/init.c | 10 +++++- src/rprotobuf.h | 8 ++--- src/wrapper_ServiceDescriptor.cpp | 19 ++++++++++-- 19 files changed, 144 insertions(+), 51 deletions(-)
Title: Interface for the 'QuickJS-NG' Lightweight 'JavaScript' Engine
Description: An 'R' interface to the 'QuickJS' portable 'JavaScript'
engine. The engine and all 'R' to 'JavaScript' interoperability is bundled
within the package, requiring no dependencies beyond a 'C' compiler.
Author: Andrew R. Johnson [aut, cre] ,
QuickJS Authors [cph] ,
QuickJS-NG Authors [cph]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between QuickJSR versions 1.10.0 dated 2026-05-17 and 1.11.0 dated 2026-08-21
DESCRIPTION | 8 MD5 | 120 NAMESPACE | 2 NEWS.md | 5 R/JSContext.R | 27 R/flags.R |only R/qjs.R | 16 R/zzz.R | 4 README.md | 4 build/vignette.rds |binary cleanup |only cleanup.win |only inst/doc/working_with_js_types.html | 2 inst/tinytest/test_JSContext.R | 60 inst/tinytest/test_assign.R |only inst/tinytest/test_conversion.R |only inst/tinytest/test_data_conversion.R | 85 inst/tinytest/test_environment.R |only inst/tinytest/test_interop.R |only inst/tinytest/test_io_wrappers.R |only inst/tinytest/test_os_exec_fork_safety.R |only inst/tinytest/test_qjs_eval.R | 20 inst/tinytest/test_r_callbacks.R |only inst/tinytest/test_stdio_file_safety.R |only inst/tinytest/test_to_json_asis.R | 16 inst/tinytest/test_to_json_dataframe.R | 28 inst/tinytest/test_to_json_date.R | 24 inst/tinytest/test_to_json_factor.R | 9 inst/tinytest/test_to_json_matrix.R | 5 man/JSContext-method-assign.Rd | 5 man/JSContext-method-call.Rd | 5 man/JSContext-method-get.Rd | 5 man/JSContext-method-source.Rd | 5 man/JSContext-method-validate.Rd | 5 man/JSContext.Rd | 5 man/QuickJSR-package.Rd | 5 man/quickjs_flags.Rd |only src/Makevars | 12 src/include/quickjs_helpers.hpp | 35 src/include/quickjsr/JSValue_to_SEXP.hpp | 70 src/include/quickjsr/JS_PropertyRecursive.hpp | 6 src/include/quickjsr/JS_SEXP.hpp | 55 src/include/quickjsr/SEXP_to_JSValue.hpp | 169 src/libquickjs.c | 251 + src/quickjs/api-test.c | 1144 ++++- src/quickjs/builtin-array-fromasync.h | 169 src/quickjs/builtin-iterator-zip-keyed.h | 466 +- src/quickjs/builtin-iterator-zip.h | 472 +- src/quickjs/cutils.h | 1 src/quickjs/libregexp-opcode.h | 37 src/quickjs/libregexp.c | 2396 +++++++--- src/quickjs/libregexp.h | 7 src/quickjs/libunicode-table.h | 453 + src/quickjs/libunicode.c | 339 + src/quickjs/libunicode.h | 50 src/quickjs/lre-test.c | 68 src/quickjs/qjs.c | 64 src/quickjs/quickjs-atom.h | 12 src/quickjs/quickjs-libc.c | 83 src/quickjs/quickjs-opcode.h | 10 src/quickjs/quickjs.c | 5890 +++++++++++++++++++++----- src/quickjs/quickjs.h | 102 src/quickjs/run-test262.c | 28 src/quickjs/unicode_gen.c | 517 ++ src/quickjs/unicode_gen_def.h | 16 src/quickjsr.cpp | 109 tests/tinytest.R | 1 67 files changed, 10796 insertions(+), 2706 deletions(-)
Title: Identify Characteristics of Patients in the OMOP Common Data
Model
Description: Identify the characteristics of patients in data mapped to the
Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xintong Li [ctb] ,
Xihang Chen [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between PatientProfiles versions 1.6.0 dated 2026-07-25 and 1.6.1 dated 2026-08-21
DESCRIPTION | 6 MD5 | 16 +- NEWS.md | 4 R/addIntersect.R | 6 R/checks.R | 13 + inst/doc/cohort-intersect.html | 94 +++++++------- inst/doc/demographics.html | 246 ++++++++++++++++++------------------- inst/doc/event.html | 18 +- tests/testthat/test-addIntersect.R | 20 ++- 9 files changed, 225 insertions(+), 198 deletions(-)
More information about PatientProfiles at CRAN
Permanent link
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <d [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Kurt Hornik [aut] ,
Carolin Strobl [aut] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.3-21 dated 2026-07-12 and 1.3-22 dated 2026-08-21
DESCRIPTION | 11 +- MD5 | 44 +++++----- build/partial.rdb |binary inst/NEWS.Rd | 11 ++ inst/doc/MOB.R | 29 +++--- inst/doc/MOB.Rnw | 43 +++++----- inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary man/mob.Rd | 17 +--- man/plot.mob.Rd | 19 +--- tests/Distributions.Rout.save | 4 tests/Examples/party-Ex.Rout.save | 44 ++++------ tests/LinearStatistic-regtest.Rout.save | 4 tests/Predict-regtest.Rout.save | 4 tests/RandomForest-regtest.Rout.save | 10 +- tests/TestStatistic-regtest.Rout.save | 4 tests/TreeGrow-regtest.Rout.save | 4 tests/Utils-regtest.Rout.save | 4 tests/bugfixes.Rout.save | 10 +- tests/mob.R | 13 +-- tests/mob.Rout.save | 136 ++++++++------------------------ vignettes/MOB.Rnw | 43 +++++----- vignettes/MOB.Rout.save | 29 +++--- 23 files changed, 215 insertions(+), 268 deletions(-)
Title: Dynamic, Probabilistic, and Higher-Order Network Analysis
Description: Estimate, compare, and analyze dynamic and psychological networks
using a unified interface. Provides transition network analysis
estimation (transition, frequency, co-occurrence, attention-weighted)
Saqr et al. (2025) <doi:10.1145/3706468.3706513>, psychological
network methods (correlation, partial correlation, 'graphical lasso',
'Ising') Saqr, Beck, and Lopez-Pernas (2024)
<doi:10.1007/978-3-031-54464-4_19>,
and higher-order network methods including higher-order networks,
higher-order network embedding, hyper-path anomaly, and multi-order
generative model. Supports bootstrap inference, permutation testing,
split-half reliability, centrality stability analysis, mixed Markov
models, multi-cluster multi-layer networks and clustering.
Author: Mohammed Saqr [aut, cre, cph],
Sonsoles Lopez-Pernas [aut],
Kamila Misiejuk [aut]
Maintainer: Mohammed Saqr <saqr@saqr.me>
Diff between Nestimate versions 0.8.0 dated 2026-07-10 and 0.8.5 dated 2026-08-21
DESCRIPTION | 8 MD5 | 99 +- NAMESPACE | 11 NEWS.md | 143 +++ R/bayes_compare.R | 2 R/build_network.R | 6 R/cluster_data.R | 17 R/cluster_diagnostics.R | 10 R/data_conversion.R | 78 - R/group-id.R |only R/htna-partition.R |only R/mcml.R | 55 + R/mmm.R | 102 +- R/prepare_data.R | 51 - R/sequence_compare.R | 2 R/sequence_plot.R | 2 R/transition_entropy.R | 959 ++++++++++++++++++++- build/vignette.rds |binary inst/doc/clustering.R | 5 inst/doc/clustering.Rmd | 33 inst/doc/clustering.html | 55 - inst/doc/sequence-comparison.html | 4 inst/doc/transition-entropy.R |only inst/doc/transition-entropy.Rmd |only inst/doc/transition-entropy.html |only inst/doc/transition-networks.html | 8 man/Nestimate-package.Rd | 2 man/as_htna.Rd | 26 man/build_clusters.Rd | 2 man/build_network.Rd | 6 man/cluster_diagnostics.Rd | 8 man/cluster_mmm.Rd | 49 - man/entropy_bayes.Rd |only man/entropy_network.Rd |only man/entropy_trajectory.Rd |only man/plot.net_entropy_bayes.Rd |only man/plot.net_entropy_trajectory.Rd |only man/plot.net_mmm_clustering.Rd | 10 man/prepare.Rd | 14 man/print.net_entropy_bayes.Rd |only man/print.net_entropy_bayes_group.Rd |only man/print.net_entropy_trajectory.Rd |only man/print.net_mmm_clustering.Rd | 8 man/summary.net_entropy_bayes.Rd |only man/summary.net_entropy_trajectory.Rd |only man/transition_entropy.Rd | 24 tests/testthat/test-as_htna.R | 53 + tests/testthat/test-cluster-diagnostics.R | 12 tests/testthat/test-contract-htna.R | 105 ++ tests/testthat/test-htna-clustering-equivalence.R |only tests/testthat/test-mcml_pc.R | 18 tests/testthat/test-mmm.R | 25 tests/testthat/test-plot_state_frequencies.R | 5 tests/testthat/test-prepare-grouping-equivalence.R |only tests/testthat/test-prepare.R | 139 +++ tests/testthat/test-prepare_onehot-grouping.R |only tests/testthat/test-print-cluster.R | 38 tests/testthat/test-transition_entropy.R | 342 +++++++ vignettes/clustering.Rmd | 33 vignettes/transition-entropy.Rmd |only 60 files changed, 2231 insertions(+), 338 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre] ,
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb],
Christian Ritz [ctb],
Christian B. Pipper [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-31 dated 2026-07-12 and 1.4-32 dated 2026-08-21
DESCRIPTION | 6 +-- MD5 | 46 ++++++++++++++--------------- R/methods.R | 6 +-- R/pqfunctions.R | 2 + build/partial.rdb |binary build/vignette.rds |binary data/cholesterol.rda |binary data/litter.rda |binary inst/NEWS.Rd | 8 +++++ inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary man/cld.Rd | 1 man/glht.Rd | 1 tests/Examples/multcomp-Ex.Rout.save | 6 +-- tests/bugfix.R | 2 + tests/bugfix.Rout.save | 9 ++--- tests/regtest-Tukey.Rout.save | 4 +- tests/regtest-anova.Rout.save | 4 +- tests/regtest-interface-extended.Rout.save | 4 +- tests/regtest-interface.Rout.save | 4 +- tests/regtest-lme.Rout.save | 4 +- tests/regtest-mmm.Rout.save | 4 +- tests/regtest-survival.Rout.save | 4 +- 24 files changed, 64 insertions(+), 51 deletions(-)
Title: Cluster Extension for 'mlr3'
Description: Extends the 'mlr3' package with cluster analysis.
Author: Maximilian Muecke [aut, cre] ,
Damir Pulatov [aut],
Michel Lang [aut] ,
Marc Becker [ctb]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between mlr3cluster versions 0.4.1 dated 2026-07-10 and 0.5.0 dated 2026-08-21
DESCRIPTION | 50 +-- MD5 | 259 ++++++++--------- NAMESPACE | 15 NEWS.md | 46 +++ R/LearnerClustAffinityPropagation.R | 9 R/LearnerClustAgnes.R | 8 R/LearnerClustBICO.R | 4 R/LearnerClustBIRCH.R | 2 R/LearnerClustCLARA.R | 14 R/LearnerClustCMeans.R | 8 R/LearnerClustCobweb.R | 33 +- R/LearnerClustDBSCAN.R | 2 R/LearnerClustDBSCANfpc.R | 7 R/LearnerClustDiana.R | 8 R/LearnerClustEM.R | 30 + R/LearnerClustFanny.R | 4 R/LearnerClustFarthestFirst.R | 32 +- R/LearnerClustFeatureless.R | 2 R/LearnerClustFlexmix.R | 4 R/LearnerClustGMeans.R |only R/LearnerClustGenie.R | 8 R/LearnerClustHDBSCAN.R | 4 R/LearnerClustHclust.R | 10 R/LearnerClustKCCA.R | 16 - R/LearnerClustKKMeans.R | 4 R/LearnerClustKMeans.R | 9 R/LearnerClustKMeansRcpp.R |only R/LearnerClustKModes.R |only R/LearnerClustKProto.R | 2 R/LearnerClustMclust.R | 4 R/LearnerClustMeanShift.R | 25 + R/LearnerClustMiniBatchKMeans.R | 2 R/LearnerClustMovMF.R | 9 R/LearnerClustOPTICS.R | 11 R/LearnerClustPAM.R | 14 R/LearnerClustProtoclust.R | 42 +- R/LearnerClustSKMeans.R | 4 R/LearnerClustSOM.R | 6 R/LearnerClustSTDBSCAN.R | 3 R/LearnerClustSimpleKMeans.R | 32 +- R/LearnerClustSpectral.R | 6 R/LearnerClustTclust.R | 6 R/LearnerClustXMeans.R | 6 R/MeasureClustSimple.R | 53 ++- R/PredictionClust.R | 25 + R/PredictionDataClust.R | 40 ++ R/TaskClust_usarrest.R | 2 R/as_prediction_clust.R | 6 R/bibentries.R | 26 + R/cluster_stats.R | 5 R/helper.R | 23 + R/helper_weka.R |only R/zzz.R | 4 man/PredictionClust.Rd | 4 man/mlr_learners_clust.MBatchKMeans.Rd | 3 man/mlr_learners_clust.SimpleKMeans.Rd | 55 +++ man/mlr_learners_clust.agnes.Rd | 3 man/mlr_learners_clust.ap.Rd | 3 man/mlr_learners_clust.bico.Rd | 5 man/mlr_learners_clust.birch.Rd | 3 man/mlr_learners_clust.clara.Rd | 3 man/mlr_learners_clust.cmeans.Rd | 3 man/mlr_learners_clust.cobweb.Rd | 64 +++- man/mlr_learners_clust.dbscan.Rd | 3 man/mlr_learners_clust.dbscan_fpc.Rd | 3 man/mlr_learners_clust.diana.Rd | 3 man/mlr_learners_clust.em.Rd | 53 +++ man/mlr_learners_clust.fanny.Rd | 3 man/mlr_learners_clust.featureless.Rd | 3 man/mlr_learners_clust.ff.Rd | 55 +++ man/mlr_learners_clust.flexmix.Rd | 3 man/mlr_learners_clust.genie.Rd | 3 man/mlr_learners_clust.gmeans.Rd |only man/mlr_learners_clust.hclust.Rd | 5 man/mlr_learners_clust.hdbscan.Rd | 5 man/mlr_learners_clust.kcca.Rd | 12 man/mlr_learners_clust.kkmeans.Rd | 3 man/mlr_learners_clust.kmeans.Rd | 3 man/mlr_learners_clust.kmeans_rcpp.Rd |only man/mlr_learners_clust.kmodes.Rd |only man/mlr_learners_clust.kproto.Rd | 3 man/mlr_learners_clust.mclust.Rd | 3 man/mlr_learners_clust.meanshift.Rd | 6 man/mlr_learners_clust.movMF.Rd | 7 man/mlr_learners_clust.optics.Rd | 3 man/mlr_learners_clust.pam.Rd | 3 man/mlr_learners_clust.protoclust.Rd | 18 - man/mlr_learners_clust.skmeans.Rd | 5 man/mlr_learners_clust.som.Rd | 3 man/mlr_learners_clust.specc.Rd | 5 man/mlr_learners_clust.stdbscan.Rd | 4 man/mlr_learners_clust.tclust.Rd | 3 man/mlr_learners_clust.xmeans.Rd | 5 man/mlr_measures_clust.avg_between.Rd | 3 man/mlr_measures_clust.avg_within.Rd | 3 man/mlr_measures_clust.ch.Rd | 1 man/mlr_measures_clust.davies_bouldin.Rd | 1 man/mlr_measures_clust.dunn.Rd | 3 man/mlr_measures_clust.dunn2.Rd | 3 man/mlr_measures_clust.entropy.Rd | 1 man/mlr_measures_clust.pearsongamma.Rd | 3 man/mlr_measures_clust.silhouette.Rd | 3 man/mlr_measures_clust.sse_ratio.Rd |only man/mlr_measures_clust.wb_ratio.Rd | 3 man/mlr_measures_clust.wss.Rd | 1 man/mlr_tasks_usarrests.Rd | 2 tests/testthat/_snaps/MeasureClust.md | 23 + tests/testthat/_snaps/PredictionClust.md | 34 ++ tests/testthat/_snaps/mlr_learners_clust_clara.md | 11 tests/testthat/_snaps/mlr_learners_clust_dbscan_fpc.md | 11 tests/testthat/_snaps/mlr_learners_clust_kmodes.md |only tests/testthat/_snaps/mlr_learners_clust_pam.md |only tests/testthat/test_LearnerClust.R | 19 + tests/testthat/test_MeasureClust.R | 11 tests/testthat/test_PredictionClust.R | 79 +++++ tests/testthat/test_cluster_stats.R | 10 tests/testthat/test_mlr_learners_clust_agnes.R | 10 tests/testthat/test_mlr_learners_clust_clara.R | 4 tests/testthat/test_mlr_learners_clust_cobweb.R | 4 tests/testthat/test_mlr_learners_clust_dbscan_fpc.R | 4 tests/testthat/test_mlr_learners_clust_diana.R | 10 tests/testthat/test_mlr_learners_clust_fanny.R | 8 tests/testthat/test_mlr_learners_clust_ff.R | 3 tests/testthat/test_mlr_learners_clust_genie.R | 10 tests/testthat/test_mlr_learners_clust_gmeans.R |only tests/testthat/test_mlr_learners_clust_hclust.R | 10 tests/testthat/test_mlr_learners_clust_kcca.R | 3 tests/testthat/test_mlr_learners_clust_kmeans_rcpp.R |only tests/testthat/test_mlr_learners_clust_kmodes.R |only tests/testthat/test_mlr_learners_clust_meanshift.R | 47 ++- tests/testthat/test_mlr_learners_clust_movMF.R | 3 tests/testthat/test_mlr_learners_clust_pam.R | 7 tests/testthat/test_mlr_learners_clust_protoclust.R | 46 ++- tests/testthat/test_mlr_learners_clust_simplekmeans.R | 2 tests/testthat/test_mlr_learners_clust_skmeans.R | 5 tests/testthat/test_mlr_learners_clust_spectral.R | 8 tests/testthat/test_mlr_learners_clust_tclust.R | 8 137 files changed, 1387 insertions(+), 345 deletions(-)
Title: 'JavaScript' Utilities for 'R'
Description: A collection of popular/useful JavaScript utilities, including the
terser minifier, sass compiler, typescript transpiler, and more.
Author: Andrew R. Johnson [aut, cre]
Maintainer: Andrew R. Johnson <andrew.johnson@arjohnsonau.com>
Diff between jsutils versions 0.3.0 dated 2026-05-17 and 0.4.0 dated 2026-08-21
jsutils-0.3.0/jsutils/inst/bundle/package-lock.json |only jsutils-0.3.0/jsutils/inst/js/sass.1.99.0.js |only jsutils-0.3.0/jsutils/inst/js/terser.5.47.1.js |only jsutils-0.4.0/jsutils/DESCRIPTION | 8 jsutils-0.4.0/jsutils/MD5 | 51 jsutils-0.4.0/jsutils/NEWS.md | 4 jsutils-0.4.0/jsutils/R/esprima.R | 6 jsutils-0.4.0/jsutils/R/sass.R | 4 jsutils-0.4.0/jsutils/R/terser.R | 4 jsutils-0.4.0/jsutils/R/typescript.R | 4 jsutils-0.4.0/jsutils/R/versions.R | 4 jsutils-0.4.0/jsutils/README.md | 4 jsutils-0.4.0/jsutils/inst/bundle/build.js |only jsutils-0.4.0/jsutils/inst/bundle/bun.lock |only jsutils-0.4.0/jsutils/inst/bundle/esprima.js | 4 jsutils-0.4.0/jsutils/inst/bundle/package.json | 8 jsutils-0.4.0/jsutils/inst/bundle/sass.js | 4 jsutils-0.4.0/jsutils/inst/bundle/terser.js | 4 jsutils-0.4.0/jsutils/inst/bundle/typescript.js | 4 jsutils-0.4.0/jsutils/inst/js/esprima.4.0.1.js |12849 jsutils-0.4.0/jsutils/inst/js/esprima.4.0.1.min.js |only jsutils-0.4.0/jsutils/inst/js/sass.1.103.1.js |only jsutils-0.4.0/jsutils/inst/js/sass.1.103.1.min.js |only jsutils-0.4.0/jsutils/inst/js/terser.5.50.0.js |only jsutils-0.4.0/jsutils/inst/js/terser.5.50.0.min.js |only jsutils-0.4.0/jsutils/inst/js/typescript.6.0.3.js |385980 ++++++++---------- jsutils-0.4.0/jsutils/inst/js/typescript.6.0.3.min.js |only jsutils-0.4.0/jsutils/man/esprima.Rd | 2 jsutils-0.4.0/jsutils/man/jsutils-package.Rd | 7 jsutils-0.4.0/jsutils/man/sass.Rd | 2 jsutils-0.4.0/jsutils/man/terser.Rd | 2 jsutils-0.4.0/jsutils/man/typescript.Rd | 2 32 files changed, 193913 insertions(+), 205044 deletions(-)
Title: Bayesian MI-LASSO for Variable Selection on Multiply-Imputed
Datasets
Description: Provides a suite of Bayesian MI-LASSO for variable selection methods for multiply-imputed datasets. The package includes four Bayesian MI-LASSO models using shrinkage (Multi-Laplace, Horseshoe, ARD) and Spike-and-Slab (Spike-and-Laplace) priors, along with tools for model fitting via MCMC, four-step projection predictive variable selection, and hyperparameter calibration. Methods are suitable for both continuous and binary covariates under missing-at-random or missing-completely-at-random assumptions. See Zou, J., Wang, S. and Chen, Q. (2025), Bayesian MI-LASSO for Variable Selection on Multiply-Imputed Data. ArXiv, 2211.00114. <doi:10.48550/arXiv.2211.00114> for more details. We also provide the frequentist MI-LASSO function.
Author: Jungang Zou [aut, cre],
Sijian Wang [aut],
Qixuan Chen [aut]
Maintainer: Jungang Zou <jungang.zou@gmail.com>
Diff between BMIselect versions 1.0.4 dated 2026-07-09 and 1.0.9 dated 2026-08-21
DESCRIPTION | 8 MD5 | 50 +- NAMESPACE | 6 R/ARD.R | 8 R/Horseshoe.R | 8 R/Multi_Laplace.R | 8 R/Spike_Laplace.R | 8 R/bmiselect.R | 611 +++++++++++++++++++++++++++++------- R/projection.R | 222 ++++++++----- R/select_criteria.R |only R/sim.R | 74 ++-- R/utils.R | 18 - inst/doc/Introduction.Rmd | 18 - inst/doc/Introduction.html | 385 ++++++++++++---------- man/ARD_mcmc.Rd | 8 man/BMI_LASSO.Rd | 57 ++- man/calibrate_posterior.Rd |only man/horseshoe_mcmc.Rd | 8 man/multi_laplace_mcmc.Rd | 8 man/projection_mean.Rd | 19 - man/projection_posterior.Rd | 15 man/spike_laplace_partially_mcmc.Rd | 8 src/ard.cpp | 97 +++++ src/horseshoe.cpp | 113 +++++- src/spike_laplace.cpp | 9 tests |only vignettes/Introduction.Rmd | 18 - 27 files changed, 1226 insertions(+), 558 deletions(-)
Title: Access to Global Sub-National Income Data
Description: Provides access to granular sub-national income data from the
MCC-PIK Database Of Sub-national Economic Output (DOSE). The package
downloads and processes the data from its open repository on 'Zenodo'
(<https://zenodo.org/records/20035157>). Functions are provided to
fetch data at multiple geographic levels, match coordinates to
administrative regions, and access associated geometries.
Author: Pablo Garcia Guzman [aut, cre, cph]
Maintainer: Pablo Garcia Guzman <garciagp@ebrd.com>
Diff between subincomeR versions 0.5.0 dated 2026-05-08 and 0.6.0 dated 2026-08-21
subincomeR-0.5.0/subincomeR/inst/doc/regional-convergence.R |only subincomeR-0.6.0/subincomeR/DESCRIPTION | 12 subincomeR-0.6.0/subincomeR/MD5 | 44 +- subincomeR-0.6.0/subincomeR/NAMESPACE | 2 subincomeR-0.6.0/subincomeR/NEWS.md | 35 ++ subincomeR-0.6.0/subincomeR/R/cache.R |only subincomeR-0.6.0/subincomeR/R/getDOSE.R | 106 ++---- subincomeR-0.6.0/subincomeR/R/getDOSE_geom.r | 166 +++++----- subincomeR-0.6.0/subincomeR/R/matchDOSE.R | 98 +++-- subincomeR-0.6.0/subincomeR/R/utils.R |only subincomeR-0.6.0/subincomeR/build/vignette.rds |binary subincomeR-0.6.0/subincomeR/inst/WORDLIST | 1 subincomeR-0.6.0/subincomeR/inst/doc/regional-convergence.Rmd | 62 ++- subincomeR-0.6.0/subincomeR/inst/doc/regional-convergence.html | 27 + subincomeR-0.6.0/subincomeR/man/figures/map.png |binary subincomeR-0.6.0/subincomeR/man/getDOSE.Rd | 23 + subincomeR-0.6.0/subincomeR/man/getDOSE_geom.Rd | 21 + subincomeR-0.6.0/subincomeR/man/matchDOSE.Rd | 30 + subincomeR-0.6.0/subincomeR/man/subincomeR_cache_clear.Rd |only subincomeR-0.6.0/subincomeR/man/subincomeR_cache_dir.Rd |only subincomeR-0.6.0/subincomeR/tests/testthat.R |only subincomeR-0.6.0/subincomeR/tests/testthat/test-cache.R |only subincomeR-0.6.0/subincomeR/tests/testthat/test-coverage.R |only subincomeR-0.6.0/subincomeR/tests/testthat/test-getDOSE_geom.R | 6 subincomeR-0.6.0/subincomeR/tests/testthat/test-matchDOSE.R | 4 subincomeR-0.6.0/subincomeR/tests/testthat/test-offline.R |only subincomeR-0.6.0/subincomeR/vignettes/img |only subincomeR-0.6.0/subincomeR/vignettes/regional-convergence.Rmd | 62 ++- 28 files changed, 447 insertions(+), 252 deletions(-)
Title: A Reproducible Workflow Layer for 'Scopus' Bibliographic
Searches
Description: A coherent, quota-aware workflow layer over the Elsevier
'Scopus' Search 'API' <https://dev.elsevier.com/sc_apis.html>. It builds
reproducible search plans, retrieves records with rate-limit handling,
retry with back-off and optional resumable caching, normalises results to a
stable tidy schema, extracts and tracks changes in Digital Object
Identifiers (DOIs), sizes sets of concepts and their intersections,
compares publication trends across topics, writes the search up as a
reproducible record for a methods section following the 'PRISMA-S'
reporting standard (Rethlefsen and others, 2021)
<doi:10.1186/s13643-020-01542-z> and exports to formats
compatible with downstream bibliometric tools. Network and 'API'
errors are surfaced as typed conditions so that callers can respond to them
programmatically. 'Scopus' is a trademark of Elsevier. This package is an
independent client and is not affiliated with or endorsed by Elsevier.
Author: Pablo Bernabeu [aut, cre]
Maintainer: Pablo Bernabeu <pcbernabeu@gmail.com>
Diff between scopusflow versions 0.1.0 dated 2026-06-20 and 0.4.0 dated 2026-08-21
DESCRIPTION | 24 - MD5 | 218 +++++---- NAMESPACE | 22 NEWS.md | 349 ++++++++++++++- R/abstract.R |only R/analyse.R |only R/app-helpers.R |only R/bibliometrix.R | 11 R/combine.R | 30 + R/compare.R | 58 +- R/conditions.R | 7 R/corpus.R |only R/count.R | 28 + R/data.R | 60 +- R/dois.R | 34 - R/export-refman.R |only R/fetch.R | 157 ++++++ R/fetch_plan.R | 296 ++++++++++++ R/intersections.R |only R/io.R | 52 +- R/key.R | 2 R/plan.R | 10 R/plot-analyse.R |only R/plot-intersections.R |only R/plot.R | 212 ++++++++- R/print.R |only R/records.R | 110 +++- R/report.R |only R/request.R | 45 + R/run-app.R |only R/scopusflow-package.R | 10 R/summary.R | 14 README.md | 399 +++++++++-------- build/partial.rdb |only build/vignette.rds |binary data/example_records.rda |binary inst/CITATION | 11 inst/WORDLIST | 68 ++ inst/doc/about.R |only inst/doc/about.Rmd |only inst/doc/about.html |only inst/doc/analysing-a-literature.R |only inst/doc/analysing-a-literature.Rmd |only inst/doc/analysing-a-literature.html |only inst/doc/building-a-reference-set.R | 43 + inst/doc/building-a-reference-set.Rmd | 82 +++ inst/doc/building-a-reference-set.html | 354 +++++++++++++-- inst/doc/comparing-topics.R | 83 +++ inst/doc/comparing-topics.Rmd | 142 +++++- inst/doc/comparing-topics.html | 231 +++++++-- inst/doc/designing-queries.R | 27 + inst/doc/designing-queries.Rmd | 43 + inst/doc/designing-queries.html | 270 ++++++++--- inst/doc/keywords-and-references.R |only inst/doc/keywords-and-references.Rmd |only inst/doc/keywords-and-references.html |only inst/doc/plans-and-quota.R | 73 +++ inst/doc/plans-and-quota.Rmd | 442 +++++++++++++------ inst/doc/plans-and-quota.html | 692 +++++++++++++++++++++++++---- inst/doc/scopusflow.R | 109 +++- inst/doc/scopusflow.Rmd | 419 +++++++++++------- inst/doc/scopusflow.html | 718 ++++++++++++++++++++++++------- inst/doc/tracking-literature-change.R | 52 +- inst/doc/tracking-literature-change.Rmd | 102 ++-- inst/doc/tracking-literature-change.html | 176 ++++--- inst/doc/using-the-app.R |only inst/doc/using-the-app.Rmd |only inst/doc/using-the-app.html |only inst/extdata/README.md |only inst/extdata/scopus_page.json | 16 man/as_bibliometrix.Rd | 11 man/as_bibtex.Rd |only man/example_records.Rd | 61 +- man/figures/README-readme-hero-1.png |binary man/figures/logo.png |binary man/makeContent.sf_endlabels.Rd |only man/plot_scopus_comparison.Rd | 11 man/plot_scopus_intersections.Rd |only man/plot_scopus_top.Rd |only man/plot_scopus_trend.Rd |only man/run_app.Rd |only man/scopus_abstract.Rd |only man/scopus_combine.Rd | 19 man/scopus_compare_topics.Rd | 33 + man/scopus_corpus.Rd |only man/scopus_count.Rd | 27 + man/scopus_diff_dois.Rd | 9 man/scopus_extract_dois.Rd | 21 man/scopus_fetch.Rd | 44 + man/scopus_fetch_plan.Rd | 51 +- man/scopus_has_key.Rd | 2 man/scopus_intersections.Rd |only man/scopus_plan.Rd | 8 man/scopus_records.Rd | 75 ++- man/scopus_search_report.Rd |only man/scopus_top.Rd |only man/scopus_trend.Rd |only man/scopusflow-package.Rd | 12 man/summary.scopus_records.Rd | 2 man/write_scopus_records.Rd | 24 - tests/spelling.R |only tests/testthat/golden-search-record.txt |only tests/testthat/helper-mock.R | 85 +++ tests/testthat/test-abstract.R |only tests/testthat/test-analyse.R |only tests/testthat/test-app.R |only tests/testthat/test-cache.R | 331 ++++++++++++++ tests/testthat/test-combine.R | 83 +++ tests/testthat/test-compare.R | 37 + tests/testthat/test-corpus.R |only tests/testthat/test-data.R | 19 tests/testthat/test-dois.R | 8 tests/testthat/test-export-refman.R |only tests/testthat/test-fetch.R | 134 +++++ tests/testthat/test-intersections.R |only tests/testthat/test-io.R | 29 + tests/testthat/test-key.R | 15 tests/testthat/test-live.R | 90 +++ tests/testthat/test-plot.R | 169 +++++++ tests/testthat/test-print.R |only tests/testthat/test-records.R | 43 + tests/testthat/test-report.R |only tests/testthat/test-request.R |only tests/testthat/test-summary.R | 18 vignettes/about.Rmd |only vignettes/analysing-a-literature.Rmd |only vignettes/building-a-reference-set.Rmd | 82 +++ vignettes/comparing-topics.Rmd | 142 +++++- vignettes/designing-queries.Rmd | 43 + vignettes/figures |only vignettes/keywords-and-references.Rmd |only vignettes/plans-and-quota.Rmd | 442 +++++++++++++------ vignettes/scopusflow.Rmd | 419 +++++++++++------- vignettes/tracking-literature-change.Rmd | 102 ++-- vignettes/using-the-app.Rmd |only 135 files changed, 7128 insertions(+), 1874 deletions(-)
Title: Randomization Tests
Description: A collection of randomization tests, data sets and examples. The current version focuses on five testing problems and their implementation in empirical work. First, it facilitates the empirical researcher to test for particular hypotheses, such as comparisons of means, medians, and variances from k populations using robust permutation tests, which asymptotic validity holds under very weak assumptions, while retaining the exact rejection probability in finite samples when the underlying distributions are identical. Second, the description and implementation of a permutation test for testing the continuity assumption of the baseline covariates in the sharp regression discontinuity design (RDD) as in Canay and Kamat (2018) <https://goo.gl/UZFqt7>. More specifically, it allows the user to select a set of covariates and test the aforementioned hypothesis using a permutation test based on the Cramer-von Misses test statistic. Graphical inspection of the empirical CDF and histograms for [...truncated...]
Author: Mauricio Olivares [aut, cre],
Ignacio Sarmiento-Barbieri [aut]
Maintainer: Mauricio Olivares <mau.olivarego@gmail.com>
Diff between RATest versions 0.1.10 dated 2022-09-29 and 0.1.11 dated 2026-08-21
DESCRIPTION | 10 +++++----- LICENSE |only MD5 | 13 +++++++------ README.md | 10 ++++++---- build/vignette.rds |binary inst/doc/RDperm.Rnw | 21 ++++----------------- inst/doc/RDperm.pdf |binary vignettes/RDperm.Rnw | 21 ++++----------------- 8 files changed, 26 insertions(+), 49 deletions(-)
Title: Learning Hybrid Bayesian Networks using Mixtures of Truncated
Basis Functions
Description: Learning, manipulation and evaluation of mixtures of truncated basis functions
(MoTBFs), which include mixtures of polynomials (MOPs) and mixtures of truncated
exponentials (MTEs). MoTBFs are a flexible framework for modelling hybrid Bayesian
networks (I. Pérez-Bernabé, A. Salmerón, H. Langseth (2015) <doi:10.1007/978-3-319-20807-7_36>; H. Langseth, T.D. Nielsen, I. Pérez-Bernabé, A. Salmerón (2014) <doi:10.1016/j.ijar.2013.09.012>; I. Pérez-Bernabé, A. Fernández, R. Rumí, A. Salmerón (2016) <doi:10.1007/s10618-015-0429-7>). The package provides functionality for learning univariate, multivariate and conditional densities, with the possibility of incorporating prior knowledge. Structural learning of hybrid Bayesian networks is also provided. A set of useful tools is provided, including plotting, printing and likelihood evaluation. This package makes use of S3 objects, with two new classes called 'motbf' and 'jointmotbf'.
Author: Inmaculada Perez-Bernabe [aut],
Antonio Salmeron [aut],
Thomas D. Nielsen [aut],
Angel T. Saez-Ruiz [aut],
Ana D. Maldonado [aut, cre]
Maintainer: Ana D. Maldonado <ana.d.maldonado@ual.es>
Diff between MoTBFs versions 1.4.2 dated 2025-07-22 and 2.0 dated 2026-08-21
MoTBFs-1.4.2/MoTBFs/man/Class-JointMoTBF.Rd |only MoTBFs-1.4.2/MoTBFs/man/Class-MoTBF.Rd |only MoTBFs-1.4.2/MoTBFs/man/MoTBFs_Learning.Rd |only MoTBFs-1.4.2/MoTBFs/man/Subclass-MoTBF.Rd |only MoTBFs-1.4.2/MoTBFs/man/as.function.jointmotbf.Rd |only MoTBFs-1.4.2/MoTBFs/man/as.function.motbf.Rd |only MoTBFs-1.4.2/MoTBFs/man/coefExpJointCDF.Rd |only MoTBFs-1.4.2/MoTBFs/man/forward_sampling.Rd |only MoTBFs-1.4.2/MoTBFs/man/goodnessDiscreteVariables.Rd |only MoTBFs-1.4.2/MoTBFs/man/jointCDF.Rd |only MoTBFs-1.4.2/MoTBFs/man/parentValues.Rd |only MoTBFs-1.4.2/MoTBFs/man/plot.jointmotbf.Rd |only MoTBFs-1.4.2/MoTBFs/man/printBN.Rd |only MoTBFs-1.4.2/MoTBFs/man/printDiscreteBN.Rd |only MoTBFs-1.4.2/MoTBFs/man/sample_MoTBFs.Rd |only MoTBFs-1.4.2/MoTBFs/man/summary.jointmotbf.Rd |only MoTBFs-2.0/MoTBFs/DESCRIPTION | 62 MoTBFs-2.0/MoTBFs/MD5 | 177 +- MoTBFs-2.0/MoTBFs/NAMESPACE | 102 + MoTBFs-2.0/MoTBFs/R/Deprecated.R |only MoTBFs-2.0/MoTBFs/R/DiscreteLearning.R | 119 + MoTBFs-2.0/MoTBFs/R/Inference.R | 671 +++++----- MoTBFs-2.0/MoTBFs/R/Integrate.R |only MoTBFs-2.0/MoTBFs/R/LearningBN.R | 524 ++++---- MoTBFs-2.0/MoTBFs/R/MI_MoP_TAN.R |only MoTBFs-2.0/MoTBFs/R/MoTBFClass.R | 437 +++--- MoTBFs-2.0/MoTBFs/R/VariableEliminationFunctionsClean.R |only MoTBFs-2.0/MoTBFs/R/conditional.R | 237 +-- MoTBFs-2.0/MoTBFs/R/crossValidation.R |only MoTBFs-2.0/MoTBFs/R/elimination_ordering.R |only MoTBFs-2.0/MoTBFs/R/format_motbfFit.R |only MoTBFs-2.0/MoTBFs/R/functions.R | 203 ++- MoTBFs-2.0/MoTBFs/R/joint.R | 1034 +++++----------- MoTBFs-2.0/MoTBFs/R/mop.R | 349 +++-- MoTBFs-2.0/MoTBFs/R/motbf.R | 263 ---- MoTBFs-2.0/MoTBFs/R/mte.R | 157 +- MoTBFs-2.0/MoTBFs/R/plots.R |only MoTBFs-2.0/MoTBFs/R/predict.R |only MoTBFs-2.0/MoTBFs/R/print.R |only MoTBFs-2.0/MoTBFs/R/priorKnowledge.R | 188 ++ MoTBFs-2.0/MoTBFs/R/rMoTBF.R | 24 MoTBFs-2.0/MoTBFs/R/rescalatedFunctions.R | 246 +++ MoTBFs-2.0/MoTBFs/R/selectiveModel2.R |only MoTBFs-2.0/MoTBFs/R/structuralLearning.R | 79 + MoTBFs-2.0/MoTBFs/README.md |only MoTBFs-2.0/MoTBFs/build |only MoTBFs-2.0/MoTBFs/inst |only MoTBFs-2.0/MoTBFs/man/BICMoTBF.Rd | 4 MoTBFs-2.0/MoTBFs/man/LearningHC.Rd | 4 MoTBFs-2.0/MoTBFs/man/MOPTAN.Rd |only MoTBFs-2.0/MoTBFs/man/MoTBF-Distribution.Rd | 17 MoTBFs-2.0/MoTBFs/man/UpperBoundLogLikelihood.Rd | 2 MoTBFs-2.0/MoTBFs/man/coef.jointmotbf.Rd | 23 MoTBFs-2.0/MoTBFs/man/coercion-motbf.Rd |only MoTBFs-2.0/MoTBFs/man/conditionalmotbf.learning.Rd | 40 MoTBFs-2.0/MoTBFs/man/confusionMatrix.Rd |only MoTBFs-2.0/MoTBFs/man/dataMining.Rd | 11 MoTBFs-2.0/MoTBFs/man/derivMOP.Rd | 2 MoTBFs-2.0/MoTBFs/man/derivMTE.Rd | 2 MoTBFs-2.0/MoTBFs/man/derivMoTBF.Rd | 2 MoTBFs-2.0/MoTBFs/man/dimensionFunction.Rd | 26 MoTBFs-2.0/MoTBFs/man/discreteStatesFromBN.Rd | 13 MoTBFs-2.0/MoTBFs/man/ecoli.Rd | 22 MoTBFs-2.0/MoTBFs/man/eval.motbf.Rd |only MoTBFs-2.0/MoTBFs/man/evalJointFunction.Rd | 48 MoTBFs-2.0/MoTBFs/man/expectedValueMOP.Rd |only MoTBFs-2.0/MoTBFs/man/expectedValueMTE.Rd |only MoTBFs-2.0/MoTBFs/man/findConditional.Rd | 4 MoTBFs-2.0/MoTBFs/man/generateNormalPriorData.Rd | 6 MoTBFs-2.0/MoTBFs/man/getChildParentsFromGraph.Rd | 4 MoTBFs-2.0/MoTBFs/man/getCoefficients.Rd | 4 MoTBFs-2.0/MoTBFs/man/getDAG.Rd |only MoTBFs-2.0/MoTBFs/man/getMotbfDim.Rd |only MoTBFs-2.0/MoTBFs/man/getMotbfVar.Rd |only MoTBFs-2.0/MoTBFs/man/getStructure.Rd |only MoTBFs-2.0/MoTBFs/man/get_approx_posterior.Rd |only MoTBFs-2.0/MoTBFs/man/goodnessMoTBFBN.Rd | 10 MoTBFs-2.0/MoTBFs/man/integralJointMoTBF.Rd | 38 MoTBFs-2.0/MoTBFs/man/integralMOP.Rd | 29 MoTBFs-2.0/MoTBFs/man/integralMTE.Rd | 30 MoTBFs-2.0/MoTBFs/man/integralMoTBF.Rd | 41 MoTBFs-2.0/MoTBFs/man/integrate.motbf.Rd |only MoTBFs-2.0/MoTBFs/man/is.discrete.Rd | 2 MoTBFs-2.0/MoTBFs/man/is.motbf.Rd |only MoTBFs-2.0/MoTBFs/man/is.root.Rd | 4 MoTBFs-2.0/MoTBFs/man/jointmotbf.fit.Rd |only MoTBFs-2.0/MoTBFs/man/jointmotbf.learning.Rd | 66 - MoTBFs-2.0/MoTBFs/man/learnMoTBFpriorInformation.Rd | 24 MoTBFs-2.0/MoTBFs/man/marginal.jointmotbf.Rd |only MoTBFs-2.0/MoTBFs/man/marginalJointMoTBF.Rd | 37 MoTBFs-2.0/MoTBFs/man/mop.learning.Rd | 16 MoTBFs-2.0/MoTBFs/man/motbf.cv.Rd |only MoTBFs-2.0/MoTBFs/man/motbf.fit.Rd |only MoTBFs-2.0/MoTBFs/man/motbf2bnlearn.Rd |only MoTBFs-2.0/MoTBFs/man/motbf2grain.Rd |only MoTBFs-2.0/MoTBFs/man/mte.learning.Rd | 16 MoTBFs-2.0/MoTBFs/man/nVariables.Rd | 34 MoTBFs-2.0/MoTBFs/man/plot.motbf.Rd | 83 - MoTBFs-2.0/MoTBFs/man/plotConditional.Rd | 6 MoTBFs-2.0/MoTBFs/man/predict.motbf_fit.Rd |only MoTBFs-2.0/MoTBFs/man/preprocessedData.Rd | 4 MoTBFs-2.0/MoTBFs/man/print.motbf.Rd |only MoTBFs-2.0/MoTBFs/man/probDiscreteVariable.Rd | 40 MoTBFs-2.0/MoTBFs/man/query.Rd |only MoTBFs-2.0/MoTBFs/man/r.data.frame.Rd | 10 MoTBFs-2.0/MoTBFs/man/rescale_data.Rd |only MoTBFs-2.0/MoTBFs/man/rescaledFunctions.Rd | 25 MoTBFs-2.0/MoTBFs/man/rnormMultiv.Rd | 2 MoTBFs-2.0/MoTBFs/man/sample_motbfs.Rd |only MoTBFs-2.0/MoTBFs/man/subsetData.Rd | 24 MoTBFs-2.0/MoTBFs/man/summary.motbf.Rd | 26 MoTBFs-2.0/MoTBFs/man/thyroid.Rd | 48 MoTBFs-2.0/MoTBFs/man/univMoTBF.Rd | 21 MoTBFs-2.0/MoTBFs/man/variableElimination.Rd |only MoTBFs-2.0/MoTBFs/man/variableSelection.Rd |only MoTBFs-2.0/MoTBFs/vignettes |only 116 files changed, 2963 insertions(+), 2779 deletions(-)
Title: Markov Chain Gaussian Fields Simulation and Parameter Estimation
Description: Simulating and estimating (regime-switching) Markov chain Gaussian
fields with spatio-temporal covariance functions of the Gneiting class
(Gneiting 2002) <doi:10.1198/016214502760047113>, including the
regime-switching framework of Jia and Sezer (2025)
<doi:10.1063/5.0285012>. It supports parameter estimation by weighted
least squares and approximate conditional maximum likelihood methods,
and produces Kriging forecasts and intervals for existing and new
locations.
Author: Tianxia Jia [aut, cre, cph]
Maintainer: Tianxia Jia <tylarjia@outlook.com>
Diff between mcgf versions 1.1.1 dated 2024-06-29 and 1.2.0 dated 2026-08-21
DESCRIPTION | 28 MD5 | 216 ++--- NEWS.md | 29 R/add_base.R | 4 R/add_lagr.R | 6 R/add_nugget.R | 6 R/ccfs.R | 2 R/check.R | 18 R/cor2cov.R | 2 R/cor_cauchy.R | 4 R/cor_exp.R | 6 R/cor_fs.R | 4 R/cor_lagr_askey.R | 8 R/cor_lagr_exp.R | 8 R/cor_lagr_tri.R | 8 R/cor_stat.R | 10 R/cor_stat_rs.R | 10 R/cov_joint.R | 2 R/estimate.R | 6 R/find_dists.R | 4 R/find_dists_new.R | 8 R/fit_base.R | 6 R/fit_lagr.R | 17 R/krige.R | 8 R/krige_new.R | 14 R/mcgf.R | 6 R/mcgf_rs.R | 14 R/mcgf_rs_sim.R | 3 R/mcgf_sim.R | 10 R/sds.R | 2 README.md | 8 build/vignette.rds |binary inst/doc/correlation-models.R |only inst/doc/correlation-models.Rmd |only inst/doc/correlation-models.html |only inst/doc/forecasting-new-locations.R |only inst/doc/forecasting-new-locations.Rmd |only inst/doc/forecasting-new-locations.html |only inst/doc/mcgf.Rmd | 10 inst/doc/mcgf.html | 1114 +++++++++++++-------------- inst/doc/mcgf_rs.Rmd | 14 inst/doc/mcgf_rs.html | 923 +++++++++++----------- inst/doc/simulation.R |only inst/doc/simulation.Rmd |only inst/doc/simulation.html |only man/add_base.mcgf.Rd | 12 man/add_base.mcgf_rs.Rd | 16 man/add_lagr.mcgf.Rd | 12 man/add_lagr.mcgf_rs.Rd | 16 man/add_nugget.Rd | 2 man/ccfs.mcgf.Rd | 2 man/check_dists.Rd | 2 man/check_length.Rd | 8 man/check_length_ls.Rd | 6 man/cor2cov.Rd | 2 man/cor_cauchy.Rd | 22 man/cor_exp.Rd | 22 man/cor_fs.Rd | 18 man/cor_lagr_askey.Rd | 18 man/cor_lagr_exp.Rd | 18 man/cor_lagr_tri.Rd | 18 man/cor_sep.Rd | 18 man/cor_stat.Rd | 23 man/cor_stat_rs.Rd | 24 man/cov_joint.Rd | 2 man/dot-.cor_stat.Rd | 3 man/dot-cor_cauchy.Rd | 4 man/dot-cor_exp.Rd | 4 man/dot-cor_stat.Rd | 3 man/dot-find_dists.Rd | 2 man/dot-find_dists_new.Rd | 2 man/dot-mcgf_rs_sim.Rd | 3 man/dot-mcgf_sim.Rd | 3 man/find_dists.Rd | 2 man/find_dists_new.Rd | 6 man/fit_base.mcgf.Rd | 12 man/fit_base.mcgf_rs.Rd | 12 man/fit_lagr.mcgf.Rd | 12 man/fit_lagr.mcgf_rs.Rd | 12 man/is.mcgf_rs.Rd | 8 man/krige.mcgf.Rd | 14 man/krige.mcgf_rs.Rd | 12 man/krige_new.mcgf.Rd | 16 man/krige_new.mcgf_rs.Rd | 16 man/mcgf.Rd | 4 man/mcgf_rs.Rd | 8 man/mcgf_rs_sim.Rd | 7 man/mcgf_sim.Rd | 9 man/new_mcgf.Rd | 4 man/new_mcgf_rs.Rd | 4 man/obj_mle.Rd | 8 man/sd_rs.Rd | 2 man/sim1.Rd | 2 man/sim2.Rd | 2 man/sim3.Rd | 2 man/validate_mcgf.Rd | 2 man/wind.Rd | 2 tests/testthat/helper-fixtures.R |only tests/testthat/test-acfs-ccfs-sds.R |only tests/testthat/test-ccov-krige.R |only tests/testthat/test-check.R | 12 tests/testthat/test-cor_cauchy.R | 38 tests/testthat/test-cor_exp.R | 23 tests/testthat/test-cor_fs.R | 48 - tests/testthat/test-cor_sep.R | 85 +- tests/testthat/test-correlation-composite.R |only tests/testthat/test-correlation-lagrangian.R |only tests/testthat/test-covariance-utils.R |only tests/testthat/test-distances.R |only tests/testthat/test-fit-base.R |only tests/testthat/test-fit-lagr.R |only tests/testthat/test-krige-new.R |only tests/testthat/test-mcgf-object.R |only tests/testthat/test-mcgf-rs-object.R |only tests/testthat/test-model-storage.R |only tests/testthat/test-simulation.R |only vignettes/correlation-models.Rmd |only vignettes/forecasting-new-locations.Rmd |only vignettes/mcgf.Rmd | 10 vignettes/mcgf.bib | 12 vignettes/mcgf_rs.Rmd | 14 vignettes/simulation.Rmd |only 122 files changed, 1742 insertions(+), 1501 deletions(-)
Title: Map Quantiles for Physical Activity from 'NHANES'
Description: Maps physical activity from the National Health and Nutrition
Examination Survey ('NHANES') study into population-based quantiles.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between mapnhanespa versions 0.1.0 dated 2026-06-02 and 0.2.0 dated 2026-08-21
mapnhanespa-0.1.0/mapnhanespa/R/imports.R |only mapnhanespa-0.1.0/mapnhanespa/man/pipe.Rd |only mapnhanespa-0.2.0/mapnhanespa/DESCRIPTION | 10 +++++----- mapnhanespa-0.2.0/mapnhanespa/MD5 | 12 +++++------- mapnhanespa-0.2.0/mapnhanespa/NAMESPACE | 2 -- mapnhanespa-0.2.0/mapnhanespa/R/map-quantiles.R | 4 ++++ mapnhanespa-0.2.0/mapnhanespa/R/run_cdf.R | 2 +- mapnhanespa-0.2.0/mapnhanespa/README.md | 2 ++ 8 files changed, 17 insertions(+), 15 deletions(-)
Title: Web Interface to 'IsoplotR'
Description: Provides a graphical user interface to the 'IsoplotR' package for radiometric geochronology. The GUI runs in an internet browser and can either be used offline, or hosted on a server to provide online access to the 'IsoplotR' toolbox.
Author: Pieter Vermeesch [aut, cre],
Tim Band [ctb]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotRgui versions 6.8 dated 2025-10-27 and 7.0 dated 2026-08-21
DESCRIPTION | 10 +++---- MD5 | 30 +++++++++++------------ R/IsoplotR.R | 6 ++-- inst/www/home/news.html | 39 +++++++++++++++--------------- inst/www/index.html | 2 - inst/www/js/IsoplotR.js | 32 ++++++++++++++++-------- inst/www/locales/en/contextual_help.json | 5 ++- inst/www/locales/en/dictionary_class.json | 2 - inst/www/locales/en/dictionary_id.json | 16 ++++++------ inst/www/locales/en/home_id.json | 2 - inst/www/options/KDE.html | 3 ++ inst/www/options/Th-U.html | 20 ++++++--------- inst/www/options/evolution.html | 2 + inst/www/options/fissiontracks.html | 2 + inst/www/options/isochron.html | 9 +++++- inst/www/version.txt | 2 - 16 files changed, 104 insertions(+), 78 deletions(-)
Title: The Free Group
Description: The free group in R; juxtaposition is represented by a
plus. Includes inversion, multiplication by a scalar,
group-theoretic power operation, and Tietze forms. To cite the
package in publications please use Hankin (2022)
<doi:10.48550/ARXIV.2212.05883>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between freegroup versions 1.2-1 dated 2026-07-15 and 1.2-1-1 dated 2026-08-21
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- build/partial.rdb |binary inst/doc/freegroup.pdf |binary man/outer.Rd | 2 +- tests/testthat/test_aab.R | 8 +++++++- 6 files changed, 16 insertions(+), 10 deletions(-)
Title: Download Flight and Airport Data from Brazil
Description: Download flight and airport data from Brazil’s Civil Aviation Agency
(ANAC) <https://www.gov.br/anac/pt-br>. The data covers detailed
information on aircraft, airports, and airport operations registered
with ANAC. It also includes data on airfares, all international
flights to and from Brazil, and domestic flights within the country.
Author: Rafael H. M. Pereira [aut, cre] ,
Arthur Bazolli [ctb],
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Diff between flightsbr versions 1.1.1 dated 2025-07-24 and 1.2.0 dated 2026-08-21
flightsbr-1.1.1/flightsbr/R/utils_flightst.R |only flightsbr-1.1.1/flightsbr/man/get_flights_url.Rd |only flightsbr-1.2.0/flightsbr/DESCRIPTION | 37 - flightsbr-1.2.0/flightsbr/MD5 | 101 +- flightsbr-1.2.0/flightsbr/NAMESPACE | 14 flightsbr-1.2.0/flightsbr/NEWS.md | 62 + flightsbr-1.2.0/flightsbr/R/flightsbr.R | 13 flightsbr-1.2.0/flightsbr/R/latest_flights_date.R | 3 flightsbr-1.2.0/flightsbr/R/read_aircraft.R | 4 flightsbr-1.2.0/flightsbr/R/read_aircrafts.R | 13 flightsbr-1.2.0/flightsbr/R/read_airfares.R | 59 + flightsbr-1.2.0/flightsbr/R/read_airports.R | 43 + flightsbr-1.2.0/flightsbr/R/read_flights.R | 88 +- flightsbr-1.2.0/flightsbr/R/utils.R | 91 +- flightsbr-1.2.0/flightsbr/R/utils_aircraft.R | 18 flightsbr-1.2.0/flightsbr/R/utils_airfares.R | 341 ++++++++-- flightsbr-1.2.0/flightsbr/R/utils_flights.R |only flightsbr-1.2.0/flightsbr/README.md | 10 flightsbr-1.2.0/flightsbr/build/vignette.rds |binary flightsbr-1.2.0/flightsbr/inst/doc/airports.R | 2 flightsbr-1.2.0/flightsbr/inst/doc/airports.Rmd | 2 flightsbr-1.2.0/flightsbr/inst/doc/airports.html | 2 flightsbr-1.2.0/flightsbr/inst/doc/flights.R | 2 flightsbr-1.2.0/flightsbr/inst/doc/flights.Rmd | 2 flightsbr-1.2.0/flightsbr/inst/doc/flights.html | 2 flightsbr-1.2.0/flightsbr/man/check_input_date_format.Rd | 58 - flightsbr-1.2.0/flightsbr/man/download_aircraft_data.Rd | 70 +- flightsbr-1.2.0/flightsbr/man/download_airfares_data.Rd | 2 flightsbr-1.2.0/flightsbr/man/download_flights_data.Rd | 19 flightsbr-1.2.0/flightsbr/man/download_flightsbr_file.Rd | 8 flightsbr-1.2.0/flightsbr/man/flightsbr.Rd | 13 flightsbr-1.2.0/flightsbr/man/get_aircraft_dates_available.Rd | 42 - flightsbr-1.2.0/flightsbr/man/get_aircraft_url.Rd | 52 - flightsbr-1.2.0/flightsbr/man/get_airfares_dates_available.Rd | 6 flightsbr-1.2.0/flightsbr/man/get_flight_dates_available.Rd | 13 flightsbr-1.2.0/flightsbr/man/get_flights_files_available.Rd |only flightsbr-1.2.0/flightsbr/man/latest_airfares_date.Rd | 62 - flightsbr-1.2.0/flightsbr/man/latest_flights_date.Rd | 4 flightsbr-1.2.0/flightsbr/man/read_aircraft.Rd | 9 flightsbr-1.2.0/flightsbr/man/read_aircrafts.Rd | 6 flightsbr-1.2.0/flightsbr/man/read_airfares.Rd | 3 flightsbr-1.2.0/flightsbr/man/read_flights.Rd | 13 flightsbr-1.2.0/flightsbr/tests/tests_rafa/test_rafa.R | 34 flightsbr-1.2.0/flightsbr/tests/testthat/test_check_date.R | 2 flightsbr-1.2.0/flightsbr/tests/testthat/test_get_flight_dates_available.R | 2 flightsbr-1.2.0/flightsbr/tests/testthat/test_latest_flights_date.R | 2 flightsbr-1.2.0/flightsbr/tests/testthat/test_read_aircraft.R | 31 flightsbr-1.2.0/flightsbr/tests/testthat/test_read_aircrafts.R |only flightsbr-1.2.0/flightsbr/tests/testthat/test_read_airfares.R | 23 flightsbr-1.2.0/flightsbr/tests/testthat/test_read_airport_movements.R | 15 flightsbr-1.2.0/flightsbr/tests/testthat/test_read_airports.R | 15 flightsbr-1.2.0/flightsbr/tests/testthat/test_read_flights.R | 15 flightsbr-1.2.0/flightsbr/vignettes/airports.Rmd | 2 flightsbr-1.2.0/flightsbr/vignettes/flights.Rmd | 2 54 files changed, 952 insertions(+), 480 deletions(-)
Title: Flexible Graphs for Analysis of Financial Data and Time Series
Description: Flexible wrappers around R graphics modules 'dygraphs' <https://dygraphs.com/> and 'ggplot2' <https://ggplot2.tidyverse.org/> to visualize data commonly found in Financial Studies, with an emphasis on time series.
Interactive time series plots include multiple options for incorporating external data such as forecasts and events. Other static plots useful for time
series data include an intuitive and generic scatter plotter, a boxplot generator suitable for multiple time series, and event study plotters for time series analysis
around sets of dates.
Author: Derek Holmes [aut, cre, cph]
Maintainer: Derek Holmes <derek@derekholmes.com>
Diff between FinanceGraphs versions 0.9.0 dated 2026-06-22 and 0.9.2 dated 2026-08-21
FinanceGraphs-0.9.0/FinanceGraphs/man/fg_create_defaults.Rd |only FinanceGraphs-0.9.2/FinanceGraphs/DESCRIPTION | 8 FinanceGraphs-0.9.2/FinanceGraphs/MD5 | 118 +++++----- FinanceGraphs-0.9.2/FinanceGraphs/NAMESPACE | 44 ++- FinanceGraphs-0.9.2/FinanceGraphs/NEWS.md | 15 + FinanceGraphs-0.9.2/FinanceGraphs/R/Data.R | 3 FinanceGraphs-0.9.2/FinanceGraphs/R/es_ggplot.R | 4 FinanceGraphs-0.9.2/FinanceGraphs/R/event_helpers.R | 14 - FinanceGraphs-0.9.2/FinanceGraphs/R/forecast_helpers.R | 4 FinanceGraphs-0.9.2/FinanceGraphs/R/get_constants.R | 12 - FinanceGraphs-0.9.2/FinanceGraphs/R/preamble.R | 5 FinanceGraphs-0.9.2/FinanceGraphs/R/scat_ggplot.R | 6 FinanceGraphs-0.9.2/FinanceGraphs/R/seas_ggplot.R |only FinanceGraphs-0.9.2/FinanceGraphs/R/set_constants.R | 7 FinanceGraphs-0.9.2/FinanceGraphs/R/sysdata.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/R/ts_ggplot.R | 2 FinanceGraphs-0.9.2/FinanceGraphs/R/ts_graphs.R | 11 FinanceGraphs-0.9.2/FinanceGraphs/R/utilities.R | 12 - FinanceGraphs-0.9.2/FinanceGraphs/README.md | 63 ++++- FinanceGraphs-0.9.2/FinanceGraphs/build/vignette.rds |binary FinanceGraphs-0.9.2/FinanceGraphs/data/consumer_sent.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/data/earnings_ibm.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/data/eqtypx.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/data/eqtypx_melt.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/data/eqtyrtn.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/data/example_fcst_set.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/data/nomfxdta.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/data/ratings_db.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/data/recession_indic.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/data/reerdta.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/data/yc_CMSUST.rda |binary FinanceGraphs-0.9.2/FinanceGraphs/inst/doc/Time-Series-dygraph.html | 90 +++---- FinanceGraphs-0.9.2/FinanceGraphs/inst/doc/Time-Series-scatterplot.html | 16 - FinanceGraphs-0.9.2/FinanceGraphs/inst/extdata/fg_aesdefault.csv | 12 + FinanceGraphs-0.9.2/FinanceGraphs/man/Event_Helpers.Rd | 8 FinanceGraphs-0.9.2/FinanceGraphs/man/eqtyrtn.Rd | 1 FinanceGraphs-0.9.2/FinanceGraphs/man/fg_RegimeChange.Rd | 6 FinanceGraphs-0.9.2/FinanceGraphs/man/fg_addbreakouts.Rd | 2 FinanceGraphs-0.9.2/FinanceGraphs/man/fg_cut_to_events.Rd | 2 FinanceGraphs-0.9.2/FinanceGraphs/man/fg_eventStudy.Rd | 2 FinanceGraphs-0.9.2/FinanceGraphs/man/fg_findTurningPoints.Rd | 2 FinanceGraphs-0.9.2/FinanceGraphs/man/fg_prophet.Rd | 2 FinanceGraphs-0.9.2/FinanceGraphs/man/fg_scatplot.Rd | 4 FinanceGraphs-0.9.2/FinanceGraphs/man/fg_seasonalstudy.Rd |only FinanceGraphs-0.9.2/FinanceGraphs/man/fg_signal_to_events.Rd | 2 FinanceGraphs-0.9.2/FinanceGraphs/man/fg_sweep.Rd | 2 FinanceGraphs-0.9.2/FinanceGraphs/man/fg_sync_group.Rd | 4 FinanceGraphs-0.9.2/FinanceGraphs/man/fg_tsboxplot.Rd | 5 FinanceGraphs-0.9.2/FinanceGraphs/man/fgts_dygraph.Rd | 6 FinanceGraphs-0.9.2/FinanceGraphs/man/figures/README-Boxplot1-1.png |binary FinanceGraphs-0.9.2/FinanceGraphs/man/figures/README-Boxplot2-1.png |binary FinanceGraphs-0.9.2/FinanceGraphs/man/figures/README-Events1-1.png |binary FinanceGraphs-0.9.2/FinanceGraphs/man/figures/README-Events2-1.png |binary FinanceGraphs-0.9.2/FinanceGraphs/man/figures/README-Forecasts1-1.png |binary FinanceGraphs-0.9.2/FinanceGraphs/man/figures/README-Scatter1-1.png |binary FinanceGraphs-0.9.2/FinanceGraphs/man/figures/README-Seasonality-1.png |only FinanceGraphs-0.9.2/FinanceGraphs/man/figures/README-simple_example1-1.png |binary FinanceGraphs-0.9.2/FinanceGraphs/man/figures/README-simple_example2-1.png |binary FinanceGraphs-0.9.2/FinanceGraphs/man/figures/README-simple_example3-1.png |binary FinanceGraphs-0.9.2/FinanceGraphs/man/get_constants.Rd | 13 + FinanceGraphs-0.9.2/FinanceGraphs/man/reerdta.Rd | 2 FinanceGraphs-0.9.2/FinanceGraphs/man/set_constants.Rd | 4 62 files changed, 322 insertions(+), 191 deletions(-)
Title: End-to-End Automated Machine Learning and Model Evaluation
Description: Single unified interface for end-to-end modelling of regression,
categorical and time-to-event (survival) outcomes. Models created using
familiar are self-containing, and their use does not require additional
information such as baseline survival, feature clustering, or feature
transformation and normalisation parameters. Model performance,
calibration, risk group stratification, (permutation) variable importance,
individual conditional expectation, partial dependence, and more, are
assessed automatically as part of the evaluation process and exported in
tabular format and plotted, and may also be computed manually using export
and plot functions. Where possible, metrics and values obtained during the
evaluation process come with confidence intervals.
Author: Alex Zwanenburg [aut, cre] ,
Steffen Loeck [aut],
German Cancer Research Center [cph],
Technische Universitaet Dresden [cph]
Maintainer: Alex Zwanenburg <alex.zwanenburg@outlook.com>
Diff between familiar versions 2.0.2 dated 2026-06-01 and 2.0.3 dated 2026-08-21
familiar-2.0.2/familiar/tests/testthat/test-vimp_corelearn_S4.R |only familiar-2.0.3/familiar/DESCRIPTION | 26 familiar-2.0.3/familiar/MD5 | 105 +-- familiar-2.0.3/familiar/NAMESPACE | 46 - familiar-2.0.3/familiar/NEWS.md | 41 + familiar-2.0.3/familiar/R/DataObject.R | 4 familiar-2.0.3/familiar/R/ErrorMessages.R | 16 familiar-2.0.3/familiar/R/FamiliarDataComputationCalibrationData.R | 5 familiar-2.0.3/familiar/R/FamiliarDataComputationUtilities.R | 4 familiar-2.0.3/familiar/R/FamiliarModel.R | 23 familiar-2.0.3/familiar/R/FamiliarSharedS4Methods.R | 1 familiar-2.0.3/familiar/R/HyperparameterOptimisation.R | 7 familiar-2.0.3/familiar/R/HyperparameterOptimisationUtilities.R | 5 familiar-2.0.3/familiar/R/LearnerMain.R | 3 familiar-2.0.3/familiar/R/LearnerS4Naive.R | 81 ++ familiar-2.0.3/familiar/R/LearnerS4Ranger.R | 133 +--- familiar-2.0.3/familiar/R/ParseSettings.R | 34 + familiar-2.0.3/familiar/R/PlotKaplanMeier.R | 2 familiar-2.0.3/familiar/R/PlotShapForce.R | 30 - familiar-2.0.3/familiar/R/PlotShapWaterfall.R | 11 familiar-2.0.3/familiar/R/PlotUtilities.R | 2 familiar-2.0.3/familiar/R/PredictS4Methods.R | 4 familiar-2.0.3/familiar/R/TaskLearnerHyperparameters.R | 1 familiar-2.0.3/familiar/R/TaskVimpHyperparameters.R | 1 familiar-2.0.3/familiar/R/TestFunctions.R | 54 + familiar-2.0.3/familiar/R/Utilities.R | 23 familiar-2.0.3/familiar/R/VimpS4CoreLearn.R | 115 ---- familiar-2.0.3/familiar/inst/config.xml | 2 familiar-2.0.3/familiar/inst/doc/evaluation_and_explanation_precompiled.Rmd | 60 +- familiar-2.0.3/familiar/inst/doc/evaluation_and_explanation_precompiled.html | 284 +++++----- familiar-2.0.3/familiar/inst/doc/introduction_precompiled.Rmd | 2 familiar-2.0.3/familiar/inst/doc/introduction_precompiled.html | 4 familiar-2.0.3/familiar/inst/doc/learners_precompiled.Rmd | 4 familiar-2.0.3/familiar/inst/doc/learners_precompiled.html | 16 familiar-2.0.3/familiar/inst/doc/performance_metrics_precompiled.Rmd | 2 familiar-2.0.3/familiar/inst/doc/performance_metrics_precompiled.html | 4 familiar-2.0.3/familiar/inst/doc/variable_importance_precompiled.Rmd | 15 familiar-2.0.3/familiar/inst/doc/variable_importance_precompiled.html | 144 +---- familiar-2.0.3/familiar/man/dot-parse_general_settings.Rd | 9 familiar-2.0.3/familiar/man/dot-parse_hyperparameter_optimisation_settings.Rd | 11 familiar-2.0.3/familiar/man/familiar.Rd | 4 familiar-2.0.3/familiar/man/summon_familiar.Rd | 9 familiar-2.0.3/familiar/man/train_familiar.Rd | 9 familiar-2.0.3/familiar/tests/testthat/test-0_plot_calibration.R | 15 familiar-2.0.3/familiar/tests/testthat/test-evaluation_settings.R |only familiar-2.0.3/familiar/tests/testthat/test-export_prediction_data.R | 28 familiar-2.0.3/familiar/tests/testthat/test-learner_naive.R |only familiar-2.0.3/familiar/tests/testthat/test-naive_model.R | 30 + familiar-2.0.3/familiar/vignettes/eval_and_explain/decision-curve-bci-1.png |binary familiar-2.0.3/familiar/vignettes/eval_and_explain/model-variable-importance-1.png |binary familiar-2.0.3/familiar/vignettes/evaluation_and_explanation_precompiled.Rmd | 60 +- familiar-2.0.3/familiar/vignettes/introduction_precompiled.Rmd | 2 familiar-2.0.3/familiar/vignettes/learners_precompiled.Rmd | 4 familiar-2.0.3/familiar/vignettes/performance_metrics_precompiled.Rmd | 2 familiar-2.0.3/familiar/vignettes/variable_importance_precompiled.Rmd | 15 55 files changed, 840 insertions(+), 672 deletions(-)
Title: Area-Proportional Euler and Venn Diagrams
Description: Generate area-proportional Euler diagrams using numerical
optimization. A Euler diagram is a generalization of a Venn diagram,
relaxing the criterion that all interactions need to be represented.
Diagrams may be fit with circles, ellipses, squares, and rectangles via a
wide range of inputs and can be visualized in numerous ways.
Author: Johan Larsson [aut, cre, cph] ,
A. Jonathan R. Godfrey [ctb],
Peter Gustafsson [ctb],
David H. Eberly [ctb] ,
Emanuel Huber [ctb] ,
Florian Prive [ctb]
Maintainer: Johan Larsson <johan@jolars.co>
Diff between eulerr versions 8.1.0 dated 2026-06-30 and 8.3.0 dated 2026-08-21
eulerr-8.1.0/eulerr/man/n_sets.Rd |only eulerr-8.1.0/eulerr/man/rescale.Rd |only eulerr-8.3.0/eulerr/DESCRIPTION | 64 +- eulerr-8.3.0/eulerr/MD5 | 185 ++++---- eulerr-8.3.0/eulerr/NAMESPACE | 2 eulerr-8.3.0/eulerr/NEWS.md | 23 + eulerr-8.3.0/eulerr/R/compose.R | 114 ++--- eulerr-8.3.0/eulerr/R/euler.R | 2 eulerr-8.3.0/eulerr/R/eulerr_options.R | 29 + eulerr-8.3.0/eulerr/R/extendr-wrappers.R | 30 - eulerr-8.3.0/eulerr/R/fit_diagram.R | 14 eulerr-8.3.0/eulerr/R/geometry.R | 4 eulerr-8.3.0/eulerr/R/glyph-grobs.R |only eulerr-8.3.0/eulerr/R/label_placement.R | 64 ++ eulerr-8.3.0/eulerr/R/parse_input.R | 2 eulerr-8.3.0/eulerr/R/plot.euler.R | 164 ++++++- eulerr-8.3.0/eulerr/R/setup_geometry.R | 4 eulerr-8.3.0/eulerr/R/setup_grobs.R | 57 ++ eulerr-8.3.0/eulerr/R/tag-grobs.R | 209 +++++++-- eulerr-8.3.0/eulerr/R/utils.R | 71 +-- eulerr-8.3.0/eulerr/R/venn.R | 2 eulerr-8.3.0/eulerr/build/partial.rdb |binary eulerr-8.3.0/eulerr/build/vignette.rds |binary eulerr-8.3.0/eulerr/inst/WORDLIST | 4 eulerr-8.3.0/eulerr/inst/doc/comparison.Rmd | 29 - eulerr-8.3.0/eulerr/inst/doc/comparison.html | 40 - eulerr-8.3.0/eulerr/inst/doc/gallery.html | 24 - eulerr-8.3.0/eulerr/inst/doc/introduction.Rmd | 34 - eulerr-8.3.0/eulerr/inst/doc/introduction.html | 27 - eulerr-8.3.0/eulerr/inst/doc/loss-functions.Rmd | 32 - eulerr-8.3.0/eulerr/inst/doc/loss-functions.html | 6 eulerr-8.3.0/eulerr/inst/doc/under-the-hood.Rmd | 158 +++--- eulerr-8.3.0/eulerr/inst/doc/under-the-hood.html | 140 +++--- eulerr-8.3.0/eulerr/inst/doc/venn-diagrams.html | 12 eulerr-8.3.0/eulerr/inst/doc/visualization.R | 18 eulerr-8.3.0/eulerr/inst/doc/visualization.Rmd | 49 +- eulerr-8.3.0/eulerr/inst/doc/visualization.html | 82 ++- eulerr-8.3.0/eulerr/man/EULER_PANEL_PAD_PT.Rd | 8 eulerr-8.3.0/eulerr/man/apply_label_placement.Rd | 23 + eulerr-8.3.0/eulerr/man/build_leader_grob.Rd | 41 + eulerr-8.3.0/eulerr/man/build_tag_grobs.Rd | 32 + eulerr-8.3.0/eulerr/man/default_n_threads.Rd | 8 eulerr-8.3.0/eulerr/man/default_placement_opts.Rd | 3 eulerr-8.3.0/eulerr/man/detect_available_cores.Rd | 6 eulerr-8.3.0/eulerr/man/dummy_code.Rd | 8 eulerr-8.3.0/eulerr/man/ellipse_bounding_box.Rd | 7 eulerr-8.3.0/eulerr/man/ellipse_frame_to_shapes.Rd | 5 eulerr-8.3.0/eulerr/man/eulergram-compose.Rd | 11 eulerr-8.3.0/eulerr/man/eulerr_options.Rd | 4 eulerr-8.3.0/eulerr/man/expand_limits_with_canvas.Rd | 8 eulerr-8.3.0/eulerr/man/find_eulertags.Rd | 3 eulerr-8.3.0/eulerr/man/is_integer.Rd | 2 eulerr-8.3.0/eulerr/man/is_real.Rd | 2 eulerr-8.3.0/eulerr/man/makeContent.EulerGlyphs.Rd |only eulerr-8.3.0/eulerr/man/makeContent.EulerSetLabels.Rd |only eulerr-8.3.0/eulerr/man/makeContent.EulerTags.Rd | 22 eulerr-8.3.0/eulerr/man/makeContext.EulerPanel.Rd | 26 - eulerr-8.3.0/eulerr/man/measure_all_tags.Rd | 24 - eulerr-8.3.0/eulerr/man/measure_tag.Rd | 14 eulerr-8.3.0/eulerr/man/measure_tag_native.Rd | 6 eulerr-8.3.0/eulerr/man/measure_tag_sizes.Rd | 17 eulerr-8.3.0/eulerr/man/new_shape_frame.Rd | 7 eulerr-8.3.0/eulerr/man/open_measurement_viewport.Rd | 3 eulerr-8.3.0/eulerr/man/pad_axis_native.Rd | 24 - eulerr-8.3.0/eulerr/man/place_euler_glyph_boxes.Rd |only eulerr-8.3.0/eulerr/man/place_euler_glyphs.Rd |only eulerr-8.3.0/eulerr/man/place_euler_labels.Rd | 4 eulerr-8.3.0/eulerr/man/place_euler_set_labels.Rd |only eulerr-8.3.0/eulerr/man/plot.euler.Rd | 38 + eulerr-8.3.0/eulerr/man/replace_list.Rd | 4 eulerr-8.3.0/eulerr/man/resolve_gap_native.Rd | 7 eulerr-8.3.0/eulerr/man/resolve_placement_opts.Rd | 3 eulerr-8.3.0/eulerr/man/run_placement_pass.Rd | 24 + eulerr-8.3.0/eulerr/man/setup_complement_tag.Rd | 18 eulerr-8.3.0/eulerr/man/setup_euler_glyphs.Rd |only eulerr-8.3.0/eulerr/man/setup_euler_set_labels.Rd |only eulerr-8.3.0/eulerr/man/setup_geometry.Rd | 7 eulerr-8.3.0/eulerr/man/setup_grobs.Rd | 21 eulerr-8.3.0/eulerr/man/setup_tag.Rd | 14 eulerr-8.3.0/eulerr/man/shape_bounding_box.Rd | 3 eulerr-8.3.0/eulerr/man/shapes_to_ellipse_frame.Rd | 3 eulerr-8.3.0/eulerr/man/split_waypoints.Rd | 3 eulerr-8.3.0/eulerr/man/tally_combinations.Rd | 4 eulerr-8.3.0/eulerr/man/validate_glyph_options.Rd |only eulerr-8.3.0/eulerr/man/venn.Rd | 2 eulerr-8.3.0/eulerr/src/rust/Cargo.lock | 154 +++--- eulerr-8.3.0/eulerr/src/rust/Cargo.toml | 2 eulerr-8.3.0/eulerr/src/rust/src/lib.rs | 407 +++++++++++++++++- eulerr-8.3.0/eulerr/src/rust/vendor.tar.xz |binary eulerr-8.3.0/eulerr/tests/testthat/test-assertions.R | 4 eulerr-8.3.0/eulerr/tests/testthat/test-glyphs.R |only eulerr-8.3.0/eulerr/tests/testthat/test-plotting.R | 66 ++ eulerr-8.3.0/eulerr/tools/config.R | 12 eulerr-8.3.0/eulerr/tools/msrv.R | 2 eulerr-8.3.0/eulerr/tools/vendor-agent-override.md |only eulerr-8.3.0/eulerr/vignettes/comparison.Rmd | 29 - eulerr-8.3.0/eulerr/vignettes/introduction.Rmd | 34 - eulerr-8.3.0/eulerr/vignettes/loss-functions.Rmd | 32 - eulerr-8.3.0/eulerr/vignettes/under-the-hood.Rmd | 158 +++--- eulerr-8.3.0/eulerr/vignettes/visualization.Rmd | 49 +- 100 files changed, 2253 insertions(+), 860 deletions(-)
Title: Access Tidy Education Finance Data
Description: Provides easy access to tidy education finance data using Bellwether's methodology
to combine NCES F-33 Survey, Census Bureau Small Area Income Poverty Estimates (SAIPE),
community data from the ACS 5-Year Estimates, the Comparable Wage Index for
Teachers (CWIFT) from NCES EDGE, and school district land area from U.S. Census Bureau
Gazetteer Files. The package simplifies
downloading, caching, and filtering education finance data by year and state,
enabling researchers and analysts to explore K-12 education funding patterns,
revenue sources, expenditure categories, and demographic factors across
U.S. school districts.
Author: Alex Spurrier [aut, cre],
Krista Kaput [aut],
Michael Chrzan [ctb],
Bellwether [cph]
Maintainer: Alex Spurrier <alex.spurrier@bellwether.org>
Diff between edfinr versions 0.1.1 dated 2025-08-26 and 0.2.0 dated 2026-08-21
edfinr-0.1.1/edfinr/inst/doc/basic-usage.R |only edfinr-0.1.1/edfinr/inst/doc/basic-usage.Rmd |only edfinr-0.1.1/edfinr/inst/doc/basic-usage.html |only edfinr-0.1.1/edfinr/vignettes/basic-usage.Rmd |only edfinr-0.2.0/edfinr/DESCRIPTION | 21 edfinr-0.2.0/edfinr/MD5 | 48 - edfinr-0.2.0/edfinr/NEWS.md | 21 edfinr-0.2.0/edfinr/R/cache.R | 92 + edfinr-0.2.0/edfinr/R/get_finance_data.R | 244 ++--- edfinr-0.2.0/edfinr/R/utils.R | 374 +++---- edfinr-0.2.0/edfinr/README.md | 53 - edfinr-0.2.0/edfinr/build/vignette.rds |binary edfinr-0.2.0/edfinr/inst/doc/cpi-adjustments.R | 261 +++-- edfinr-0.2.0/edfinr/inst/doc/cpi-adjustments.Rmd | 165 ++- edfinr-0.2.0/edfinr/inst/doc/cpi-adjustments.html | 374 +++---- edfinr-0.2.0/edfinr/inst/doc/data-sources-methods.R |only edfinr-0.2.0/edfinr/inst/doc/data-sources-methods.Rmd | 113 +- edfinr-0.2.0/edfinr/inst/doc/data-sources-methods.html | 809 ++++++++++++++++- edfinr-0.2.0/edfinr/inst/doc/edfinr.R |only edfinr-0.2.0/edfinr/inst/doc/edfinr.Rmd |only edfinr-0.2.0/edfinr/inst/doc/edfinr.html |only edfinr-0.2.0/edfinr/man/fetch_parquet.Rd |only edfinr-0.2.0/edfinr/man/figures |only edfinr-0.2.0/edfinr/man/get_finance_data.Rd | 56 - edfinr-0.2.0/edfinr/man/list_variables.Rd | 14 edfinr-0.2.0/edfinr/tests |only edfinr-0.2.0/edfinr/vignettes/cpi-adjustments.Rmd | 165 ++- edfinr-0.2.0/edfinr/vignettes/data-sources-methods.Rmd | 113 +- edfinr-0.2.0/edfinr/vignettes/edfinr.Rmd |only 29 files changed, 2031 insertions(+), 892 deletions(-)
Title: Summarise Patient-Level Drug Utilisation in Data Mapped to the
OMOP Common Data Model
Description: Summarise patient-level drug utilisation cohorts using data mapped
to the Observational Medical Outcomes Partnership (OMOP) common data model.
New users and prevalent users cohorts can be generated and their
characteristics, indication and drug use summarised.
Author: Marti Catala [aut, cre] ,
Mike Du [ctb] ,
Yuchen Guo [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Xintong Li [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between DrugUtilisation versions 1.3.0 dated 2026-07-24 and 1.3.1 dated 2026-08-21
DESCRIPTION | 8 MD5 | 35 NEWS.md | 5 R/addIntersect.R | 19 R/benchmarkDrugUtilisation.R | 29 R/cohortUtilities.R | 7 R/documentationHelpers.R | 10 R/summariseIntersect.R | 19 inst/doc/create_cohorts.html | 311 ++-- inst/doc/drug_utilisation.html | 2200 +++++++++++++++---------------- man/DrugUtilisation-package.Rd | 1 man/addIndication.Rd | 7 man/addTreatment.Rd | 7 man/benchmarkDrugUtilisation.Rd | 6 man/reexports.Rd | 2 man/restrictIncidentCohortDoc.Rd |only man/summariseIndication.Rd | 7 man/summariseTreatment.Rd | 7 tests/testthat/test-summariseTreatment.R | 107 + 19 files changed, 1504 insertions(+), 1283 deletions(-)
More information about DrugUtilisation at CRAN
Permanent link
Title: Convenient Access to Chicago Open Data API Endpoints
Description: Provides simple, reproducible access to datasets from the
Chicago Open Data portal <https://data.cityofchicago.org/>. Functions return
results as tidy tibbles and support optional filtering, sorting,
and row limits via the Socrata API.
Author: Christian Martinez [aut, cre]
Maintainer: Christian Martinez <c.martinez0@outlook.com>
Diff between chiOpenData versions 0.1.0 dated 2026-04-16 and 0.1.1 dated 2026-08-21
DESCRIPTION | 8 +-- MD5 | 14 ++--- R/utils_request.R | 2 README.md | 2 inst/doc/getting-started.R | 108 +++++++++++++++++++++-------------------- inst/doc/getting-started.Rmd | 18 ++++-- inst/doc/getting-started.html | 109 ++++++------------------------------------ vignettes/getting-started.Rmd | 18 ++++-- 8 files changed, 108 insertions(+), 171 deletions(-)
Title: Testing for Population Trends Using Low-Cost Ecological Count
Data
Description: A Bayesian tool to test for population trends and changes in trends under arbitrary designs, including before-after (BA), control-intervention (CI) and before-after-control-intervention (BACI) designs commonly used to assess conservation impact. It infers changes in trends jointly from data obtained with multiple survey methods, as well as from limited and noisy data not necessarily collected in standardized ecological surveys. Observed counts can be modeled as following either a Poisson or a negative binomial model, and both deterministic and stochastic trend models are available. For more details on the model see Singer et al. (2025) <doi:10.1101/2025.01.08.631844>, and the file 'AUTHORS' for a list of copyright holders and contributors.
Author: Madleina Caduff [aut],
Andreas Fueglistaler [aut, cre],
Daniel Wegmann [aut],
Liam Singer [aut],
Raphael Eckel [ctb]
Maintainer: Andreas Fueglistaler <andreas.fueglistaler@unifr.ch>
This is a re-admission after prior archival of version 0.0.5 dated 2025-07-12
Diff between birp versions 0.0.5 dated 2025-07-12 and 0.0.6 dated 2026-08-21
birp-0.0.5/birp/inst/extdata/birp_BACI_configuration.txt |only birp-0.0.5/birp/man/dot-addTextSingleGamma.birp.Rd |only birp-0.0.5/birp/src/Makevars |only birp-0.0.5/birp/src/Makevars.win |only birp-0.0.5/birp/src/libs |only birp-0.0.6/birp/DESCRIPTION | 32 birp-0.0.6/birp/MD5 | 420 birp-0.0.6/birp/NEWS.md | 6 birp-0.0.6/birp/R/birp.R | 836 birp-0.0.6/birp/R/birp_data.R | 85 birp-0.0.6/birp/build/partial.rdb |binary birp-0.0.6/birp/build/vignette.rds |binary birp-0.0.6/birp/cleanup |only birp-0.0.6/birp/cleanup.win |only birp-0.0.6/birp/configure | 101 birp-0.0.6/birp/configure.win | 101 birp-0.0.6/birp/inst/doc/birp-introduction.R | 136 birp-0.0.6/birp/inst/doc/birp-introduction.Rmd | 275 birp-0.0.6/birp/inst/doc/birp-introduction.html | 724 birp-0.0.6/birp/inst/extdata/birp_BACI_gamma_configuration.txt |only birp-0.0.6/birp/inst/extdata/birp_DeltaSummaries.txt |only birp-0.0.6/birp/inst/extdata/birp_Method_1_simulated_counts.txt | 12 birp-0.0.6/birp/inst/extdata/birp_birp_Method_1_simulated_counts_filtered_counts.txt | 12 birp-0.0.6/birp/inst/extdata/birp_config.txt | 1 birp-0.0.6/birp/inst/extdata/birp_gammaSummaries.txt | 2 birp-0.0.6/birp/inst/extdata/birp_meanVar.txt | 2 birp-0.0.6/birp/inst/extdata/birp_state.txt | 3 birp-0.0.6/birp/inst/extdata/birp_timesOfChange.txt |only birp-0.0.6/birp/inst/extdata/birp_trace.txt |19982 +++++----- birp-0.0.6/birp/man/birp.Rd | 17 birp-0.0.6/birp/man/birp_data_from_data_frame.Rd | 2 birp-0.0.6/birp/man/dot-addLegendMultiGamma.birp.Rd | 4 birp-0.0.6/birp/man/dot-addTextSingleGammaDelta.birp.Rd |only birp-0.0.6/birp/man/dot-calculatePsi.birp.Rd |only birp-0.0.6/birp/man/dot-createObjBirp.birp.Rd | 17 birp-0.0.6/birp/man/dot-parsePosteriorGammaDelta.birp.Rd |only birp-0.0.6/birp/man/dot-printPostSummary.birp.Rd |only birp-0.0.6/birp/man/plot.birp.Rd | 57 birp-0.0.6/birp/man/plot_epoch_pair.Rd | 10 birp-0.0.6/birp/man/plot_mcmc.Rd | 2 birp-0.0.6/birp/man/plot_trend.Rd | 2 birp-0.0.6/birp/man/prob_step.Rd |only birp-0.0.6/birp/man/prob_trend.Rd |only birp-0.0.6/birp/man/prob_trend_diff.Rd |only birp-0.0.6/birp/man/simulate_birp.Rd | 33 birp-0.0.6/birp/man/simulate_birp_from_results.Rd | 3 birp-0.0.6/birp/src/Makevars.in |only birp-0.0.6/birp/src/RcppExports.cpp | 1 birp-0.0.6/birp/src/git_commit |only birp-0.0.6/birp/src/main.cpp | 3 birp-0.0.6/birp/vignettes/birp-introduction.Rmd | 275 51 files changed, 11763 insertions(+), 11393 deletions(-)
Title: Pedigree Validation Genetic Composition of Diploids & Polyploids
Description: Tools for pedigree quality control and genomic breed/line
composition estimation in diploid and polyploid breeding populations.
'BIGpopA' provides functions to check and correct common pedigree
errors, assign parentage from SNP genotype data using Mendelian error
rates, validate parent-offspring trios, and estimate genome-wide
breed or line composition using quadratic programming. Pedigree
validation and parentage assignment support any ploidy, using a
polysomic Mendelian test for even ploidy and a homozygosity-based
check for odd ploidy. For more details about the included 'breedTools'
functions, see Funkhouser et al. (2017) <doi:10.2527/tas2016.0003>.
Author: Josue Chinchilla-Vargas [cre, aut],
Alexander Sandercock [aut],
University of Florida [cph]
Maintainer: Josue Chinchilla-Vargas <josue.chinchilla@ufl.edu>
Diff between BIGpopA versions 1.0.6 dated 2026-07-16 and 2.0.0 dated 2026-08-21
DESCRIPTION | 12 +++-- MD5 | 22 +++++----- NEWS.md | 6 ++ R/find_parentage.R | 32 ++++++++------- R/utils.R | 90 +++++++++++++++++++++++++++++++++++++++++++ R/validate_pedigree.R | 30 ++++++++------ README.md | 4 - inst/CITATION | 2 inst/doc/BIGpopA.html | 12 ++--- man/figures |only man/find_parentage.Rd | 11 ++++- man/validate_pedigree.Rd | 11 ++++- tests/testthat/test-ploidy.R |only 13 files changed, 179 insertions(+), 53 deletions(-)
Title: Extending Lasso Model Fitting to Big Data
Description: Extend lasso and elastic-net model fitting for large data sets that
cannot be loaded into memory. Designed to be more memory- and
computation-efficient than existing lasso-fitting packages like 'glmnet' and
'ncvreg', thus allowing the user to analyze big data with limited RAM
<doi:10.32614/RJ-2021-001>.
Author: Yaohui Zeng [aut],
Chuyi Wang [aut],
Tabitha Peter [aut],
Patrick Breheny [aut, cre]
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between biglasso versions 1.6.1 dated 2025-03-05 and 1.7.0 dated 2026-08-21
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Title: Statistical Methods for Anthropometric Data
Description: Statistical methodologies especially developed to analyze anthropometric data. These methods are aimed at providing effective solutions to some commons problems related to Ergonomics and Anthropometry. They are based on clustering, the statistical concept of data depth, statistical shape analysis and archetypal analysis. Please see Vinue (2017) <doi:10.18637/jss.v077.i06>.
Author: Guillermo Vinue [aut, cre],
Irene Epifanio [aut],
Amelia Simo [aut],
M. Victoria Ibanez [aut],
Juan Domingo [aut],
Guillermo Ayala [aut]
Maintainer: Guillermo Vinue <guillermo.vinue@uv.es>
Diff between Anthropometry versions 1.21 dated 2025-12-04 and 1.22 dated 2026-08-21
DESCRIPTION | 8 - MD5 | 18 +- NEWS | 4 R/trimmedoid.R | 279 +++++++++++++++++++++++-------------------- inst/doc/Anthropometry.Rnw | 11 - inst/doc/Anthropometry.pdf |binary man/Anthropometry-package.Rd | 4 man/trimmedoid.Rd | 4 vignettes/Anthropometry.Rnw | 11 - vignettes/Anthropometry.bib | 9 - 10 files changed, 188 insertions(+), 160 deletions(-)
Title: The Equiplot Graph and Complex Inequality Measures
Description: Generates the equiplot, an iconic dot-plot graph for visualizing inequalities, as well as three complex inequality measures: the slope index of inequality, the concentration index and the mean absolute difference to the mean. For more details see World Health Organization (2013) <https://www.who.int/docs/default-source/gho-documents/health-equity/handbook-on-health-inequality-monitoring/handbook-on-health-inequality-monitoring.pdf>.
Author: Leonardo Ferreira [aut, cre],
Luisa Arroyave [aut]
Maintainer: Leonardo Ferreira <lferreira@equidade.org>
Diff between ICEHmeasures versions 2.0.0 dated 2026-08-03 and 2.1.0 dated 2026-08-21
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/mad.R | 15 ++++++++++----- man/mad.Rd | 14 ++++++++++++-- 5 files changed, 33 insertions(+), 14 deletions(-)
Title: Bayesian State-Space Aggregation of Brazilian Presidential Polls
Description: A set of dynamic measurement models to estimate latent vote shares
from noisy polling sources. The models build on Jackman (2009, ISBN: 9780470011546)
and feature specialized methods for bias adjustment based on past performance
and correction for asymmetric errors based on candidate political alignment.
Author: Rafael N. Magalhaes [aut, cre]
Maintainer: Rafael N. Magalhaes <rnunesmagalhaes@gmail.com>
Diff between agregR versions 1.0.3 dated 2026-03-06 and 1.0.4 dated 2026-08-21
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