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Package caret updated to version 3.25 with previous version 3.21 dated 2008-06-11 Author: Max Kuhn. Contributions from Jed Wing, Steve Weston and Andre Williams
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Package RcmdrPlugin.HH updated to version 1.1-14 with previous version 1.1-12 dated 2008-03-21 Author: Richard M. Heiberger, with contributions from Burt Holland.
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Title: Time series analysis and computational finance
Description: Package for time series analysis and computational finance
ChangeLog | 10 +++++++++-
DESCRIPTION | 6 +++---
R/finance.R | 4 ++--
3 files changed, 14 insertions(+), 6 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Chronological objects which can handle dates and times
Description: Chronological objects which can handle dates and times
ChangeLog | 9 +++++++++
DESCRIPTION | 6 +++---
R/chron.R | 22 ++++++++++++++++------
man/chron.Rd | 11 +++++++++++
4 files changed, 39 insertions(+), 9 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: yaImpute: An R Package for k-NN Imputation
Description: Performs popular nearest neighbor routines for imputation
DESCRIPTION | 22 +++++++++++-----------
NAMESPACE | 14 +++++++-------
R/asciigridimpute.R | 18 +++++++++++++-----
R/yai.R | 19 ++++++++++++++-----
4 files changed, 45 insertions(+), 28 deletions(-)
posted at: 05:17 | path: /cran/updated | permanent link to this entry
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data,
mainly Spatial Point Patterns, including multitype/marked points
and spatial covariates, in any two-dimensional spatial region.
Contains functions for plotting spatial data,
exploratory data analysis, model-fitting, simulation,
spatial sampling, model diagnostics,
and formal inference. Data types include point patterns,
line segment patterns, spatial windows, and
pixel images. Point process models can be
fitted to point pattern data. Cluster type models are fitted
by the method of minimum contrast. Very general Gibbs point
process models can be fitted to point pattern data
using a function ppm similar to lm or glm. Models may
include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated automatically.
Also provides facilities for formal inference (such as chi-squared
tests) and model diagnostics (including simulation
envelopes, residuals, residual plots and Q-Q plots).
DESCRIPTION | 8 ++--
INDEX | 10 +++++
R/closepairs.R | 82 ++++++++++++++++++++++++++++++++++------------
R/diagnoseppm.R | 4 +-
R/effectfun.R |only
R/eval.im.R | 9 ++---
R/kppm.R |only
R/levelset.R | 8 ++--
R/lurking.R | 10 +++--
R/marks.R | 3 +
R/mpl.R | 9 +++--
R/options.R | 3 +
R/plot.im.R | 32 +++++++++++++-----
R/ppmclass.R | 22 ++++++++++++
R/ppp.S | 52 +++++++++++++++++------------
R/update.ppm.R | 24 +++++++++++--
R/window.S | 8 ++++
R/wingeom.S | 84 ++++++++++++++++++++++++++++++++++++++++++------
data/chorley.rda |binary
data/urkiola.rda |only
demo/data.R | 3 +
demo/spatstat.R | 2 -
man/00spatstat.Rd | 67 ++++++++++++++++++++++++++------------
man/as.owin.Rd | 9 ++++-
man/effectfun.Rd |only
man/eval.im.Rd | 3 +
man/gpc2owin.Rd |only
man/internal.Rd | 12 ++++++
man/intersect.owin.Rd | 8 +---
man/kppm.Rd |only
man/lurking.Rd | 4 +-
man/matclust.estK.Rd | 7 +++-
man/mincontrast.Rd | 3 +
man/plot.im.Rd | 55 ++++++++++++++++++++++++++-----
man/plot.kppm.Rd |only
man/predict.kppm.Rd |only
man/rMatClust.Rd | 9 ++---
man/rSSI.Rd | 2 -
man/rThomas.Rd | 6 ++-
man/rmpoispp.Rd | 6 ++-
man/rpoispp.Rd | 25 ++++++++++++--
man/simulate.kppm.Rd |only
man/solutionset.Rd | 4 +-
man/spatstat.options.Rd | 6 +++
man/subset.ppp.Rd | 12 ++++--
man/thomas.estK.Rd | 4 ++
man/update.kppm.Rd |only
man/update.ppm.Rd | 16 ++++++++-
man/urkiola.Rd |only
tests/step.R |only
50 files changed, 482 insertions(+), 149 deletions(-)
posted at: 05:17 | path: /cran/updated | permanent link to this entry
Title: Sample Selection Models
Description: Estimation of Sample Selection Models
DESCRIPTION | 6 +++---
INDEX | 4 ++--
inst/doc |only
3 files changed, 5 insertions(+), 5 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entry
Title: Political Science Computational Laboratory, Stanford University
Description: Bayesian analysis of item-response theory (IRT) models, roll call analysis;
computing highest density regions; maximum likelihood estimation of
zero-inflated and hurdle models for count data; goodness-of-fit measures for
GLMs; data sets used in writing and teaching at the Political Science
Computational Laboratory; seats-votes curves.
pscl-0.97/pscl/inst/doc/.build.timestamp |only
pscl-1.00/pscl/DESCRIPTION | 6 +++---
pscl-1.00/pscl/HISTORY | 20 ++++++++++++--------
pscl-1.00/pscl/R/margins.rollcall.r | 4 ++--
pscl-1.00/pscl/inst/CITATION | 28 +++++++++++++++++++---------
pscl-1.00/pscl/inst/doc/auto/countreg.el | 17 +++++++++++------
pscl-1.00/pscl/inst/doc/countreg.pdf |binary
pscl-1.00/pscl/man/computeMargins.Rd | 6 +++---
pscl-1.00/pscl/man/hurdle.Rd | 12 +++++-------
pscl-1.00/pscl/man/zeroinfl.Rd | 12 +++++-------
10 files changed, 60 insertions(+), 45 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entry
Title: Non-supervised Regional Frequency Analysis
Description: A collection of statistical tools for objective (non-supervised) applications
of the Regional Frequency Analysis methods in hydrology.
DESCRIPTION | 6 +++---
R/BayesianMCMC.R |only
R/EXP.R | 14 +++++++++-----
R/GENLOGIS.R | 9 ++++++---
R/GENPAR.R | 9 ++++++---
R/GEV.R | 12 ++++++++----
R/LOGNORM.R | 9 ++++++---
R/MLlaio2004.R | 12 ++++++------
R/P3.R | 8 ++++----
data/functionsLaio.rda |binary
inst/doc/Fig1ElamirSeheult.pdf |binary
man/BayesianMCMC.Rd |only
man/functionsLaio.Rd | 8 ++++----
13 files changed, 52 insertions(+), 35 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entry
Title: General solvers for ordinary differential equations
(ODE) and for differential algebraic equations (DAE)
Description: Functions that solve a system of first-order ordinary
differential equations (ODE) and of differential algebraic
equations (DAE).
The functions provide an interface to the FORTRAN functions
lsoda, lsodar, lsode, lsodes, dvode and daspk.
The package also contains routines designed for solving
uni-and multicomponent 1-D and 2-D reactive transport models.
deSolve-1.1/deSolve/inst/doc/compiledCode.tex |only
deSolve-1.2/deSolve/DESCRIPTION | 21 -
deSolve-1.2/deSolve/R/daspk.R | 2
deSolve-1.2/deSolve/R/lsoda.R | 2
deSolve-1.2/deSolve/R/lsodar.R | 2
deSolve-1.2/deSolve/R/lsode.R | 440 +++++++++++++-------------
deSolve-1.2/deSolve/R/lsodes.R | 2
deSolve-1.2/deSolve/R/rk4.R | 57 ---
deSolve-1.2/deSolve/R/rkAuto.R | 8
deSolve-1.2/deSolve/R/rkMethod.R | 18 -
deSolve-1.2/deSolve/R/vode.R | 2
deSolve-1.2/deSolve/demo/rk_solvers.R | 7
deSolve-1.2/deSolve/inst/doc/compiledCode.Rnw |only
deSolve-1.2/deSolve/inst/doc/compiledCode.pdf |binary
deSolve-1.2/deSolve/inst/doc/jss.bst |only
deSolve-1.2/deSolve/inst/doc/jss.cls |only
deSolve-1.2/deSolve/inst/doc/mymod.c |only
deSolve-1.2/deSolve/inst/doc/mymod.f |only
deSolve-1.2/deSolve/inst/dynload/satres.c |only
deSolve-1.2/deSolve/inst/dynload/satres.f |only
deSolve-1.2/deSolve/inst/dynload/satres.r |only
deSolve-1.2/deSolve/inst/svnversion | 2
deSolve-1.2/deSolve/man/ccl4model.Rd | 3
deSolve-1.2/deSolve/man/deSolve.Rd |only
deSolve-1.2/deSolve/man/lsodar.Rd | 2
deSolve-1.2/deSolve/man/ode.1D.Rd | 4
deSolve-1.2/deSolve/man/ode.2D.Rd | 2
deSolve-1.2/deSolve/man/rk.Rd | 87 ++---
deSolve-1.2/deSolve/man/rk4.Rd | 13
deSolve-1.2/deSolve/man/rkMethod.Rd | 51 +--
deSolve-1.2/deSolve/src/R_init_deSolve.c |only
deSolve-1.2/deSolve/src/deSolve_utils.c | 4
32 files changed, 340 insertions(+), 389 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entry
Title: Manage massive matrices in R using C++, with UNIX support for shared memory
Description: Use C++ to create, store, access, and manipulate massive matrices. Under UNIX, it also supports use of shared memory.
DESCRIPTION | 6 +++---
R/kmeans.R | 2 ++
man/bigmemory-package.Rd | 4 ++--
man/kmeans.big.matrix.Rd | 6 ++++++
4 files changed, 13 insertions(+), 5 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entry
Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 5 +++++
DESCRIPTION | 6 +++---
R/bayespolr.R | 2 +-
3 files changed, 9 insertions(+), 4 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entry
Title: Read and write of MAT files together with R-to-Matlab connectivity
Description: This package provides methods to read and write MAT files. It also makes it possible to communicate (evaluate code, send and retrieve objects etc.) with Matlab v6 or higher running locally or on a remote host.
R.matlab-1.1.4/R.matlab/inst/HISTORY |only
R.matlab-1.2.2/R.matlab/DESCRIPTION | 13
R.matlab-1.2.2/R.matlab/R/000.R | 25
R.matlab-1.2.2/R.matlab/R/999.package.R | 9
R.matlab-1.2.2/R.matlab/R/Matlab.R | 4
R.matlab-1.2.2/R.matlab/R/readMat.R | 3683 +++++-----
R.matlab-1.2.2/R.matlab/R/writeMat.R | 686 +
R.matlab-1.2.2/R.matlab/incl/readMat.Rex | 22
R.matlab-1.2.2/R.matlab/inst/NEWS |only
R.matlab-1.2.2/R.matlab/inst/mat-files/StructWithSparseMatrix-v4.mat |only
R.matlab-1.2.2/R.matlab/man/Matlab.Rd | 63
R.matlab-1.2.2/R.matlab/man/R.matlab-package.Rd | 14
R.matlab-1.2.2/R.matlab/man/Sys.setenv.Rd | 2
R.matlab-1.2.2/R.matlab/man/readMat.Rd | 52
14 files changed, 2425 insertions(+), 2148 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entry
Title: Amelia II: A Program for Missing Data
Description: Amelia II "multiply imputes" missing data in a single cross-section
(such as a survey), from a time series (like variables collected for
each year in a country), or from a time-series-cross-sectional data
set (such as collected by years for each of several countries).
Amelia II implements our bootstrapping-based algorithm that gives
essentially the same answers as the standard IP or EMis approaches,
is usually considerably faster than existing approaches and can
handle many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but please
let us know if you find to the contrary!). The program also
generalizes existing approaches by allowing for trends in time series
across observations within a cross-sectional unit, as well as priors
that allow experts to incorporate beliefs they have about the values
of missing cells in their data. Amelia II also includes useful
diagnostics of the fit of multiple imputation models. The program
works from the R command line or via a graphical user interface that
does not require users to know R.
DESCRIPTION | 6
R/ameliagui.r | 4
R/emb.r | 12
inst/doc/amelia.bbl | 6
inst/doc/amelia.blg | 2
inst/doc/amelia.log | 4
inst/doc/amelia.pdf | 686 +++++++++++++++++++++++++--------------------------
inst/doc/index.shtml | 13
8 files changed, 372 insertions(+), 361 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entryThu, 17 Jul 2008
Title: A GUI for interactive plots using GTK+
Description: A GTK+ graphical user interface for viewing and interacting with R plots.
It tries to work out the structure of a plot, in order to interact with it.
The built-in features include: zooming the data space, identifying data points,
editing and annotating the plot, and saving to a file. New tools can be defined.
Also includes latticist, a lattice-based tool for exploratory visualisation.
DESCRIPTION | 6
R/API.R | 27 ++--
R/latticist.R | 295 ++++++++++++++-------------------------------
R/marginals.R |only
R/playTools.R | 28 ++--
R/playTools_clickhandler.R | 4
R/playTools_options.R | 2
R/playTools_time.mode.R | 2
R/utilities.R | 16 +-
inst/NEWS | 6
man/latticist.Rd | 13 +
man/marginals.Rd | 20 ++-
man/playwith.Rd | 3
13 files changed, 172 insertions(+), 250 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Inequality constrained inference in linear normal situations
Description: This package implements parameter estimation in normal (linear) models under linear equality and inequality constraints and implements normal likelihood ratio tests involving inequality-constrained hypotheses. For inequality-constrained linear models, averaging over R-squared for different orderings of regressors is also included.
DESCRIPTION | 6 +++---
R/all.R2.R | 4 ++++
R/or.relimp.R | 4 ++++
R/orlm.R | 9 +++++++--
inst/doc/News.pdf |binary
man/or.relimp.rd | 5 ++++-
man/orlm.rd | 16 +++++++++++++---
7 files changed, 35 insertions(+), 9 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Extreme Values in R
Description: Functions for extreme value theory, which may be
divided into the following groups; exploratory data analysis,
block maxima, peaks over thresholds (univariate and bivariate),
point processes, gev/gpd distributions.
DESCRIPTION | 9 ++++-----
inst/CHANGES | 10 +++++++---
2 files changed, 11 insertions(+), 8 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Functions for extreme value distributions
Description: Extends simulation, distribution, quantile and
density functions to univariate and multivariate parametric
extreme value distributions, and provides fitting functions
which calculate maximum likelihood estimates for univariate
and bivariate maxima models, and for univariate and
bivariate threshold models.
DESCRIPTION | 7 +++----
R/uvfit.R | 4 +++-
inst/CHANGES | 7 +++++++
3 files changed, 13 insertions(+), 5 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 7 ++++++-
DESCRIPTION | 6 +++---
R/bayespolr.R | 19 ++++++++++++-------
3 files changed, 21 insertions(+), 11 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entryWed, 16 Jul 2008
Title: Construction and analysis of matrix population models
Description: Construct and analyze projection matrix models from a demography study of marked individuals classified by age or stage. The package covers methods described in Matrix Population Models by Caswell (2001) and Quantitative Conservation Biology by Morris and Doak (2002).
popbio-1.1.8/popbio/data/hudcorrs.R |only
popbio-1.1.8/popbio/inst/doc |only
popbio-1.1.9/popbio/DESCRIPTION | 6 +--
popbio-1.1.9/popbio/R/multiresultm.R | 2 -
popbio-1.1.9/popbio/R/projection.matrix.R | 11 +++--
popbio-1.1.9/popbio/R/vitalsens.R | 2 -
popbio-1.1.9/popbio/data/hudcorrs.rda |only
popbio-1.1.9/popbio/inst/._CITATION |only
popbio-1.1.9/popbio/inst/CITATION |only
popbio-1.1.9/popbio/inst/ChangeLog |only
popbio-1.1.9/popbio/man/01Introduction.Rd | 7 ++-
popbio-1.1.9/popbio/man/02Caswell.Rd | 9 ++++
popbio-1.1.9/popbio/man/boot.transitions.Rd | 50 ++++++++-----------------
popbio-1.1.9/popbio/man/extCDF.Rd | 3 -
popbio-1.1.9/popbio/man/hudcorrs.Rd | 4 --
popbio-1.1.9/popbio/man/multiresultm.Rd | 12 +++---
popbio-1.1.9/popbio/man/projection.matrix.Rd | 53 ++++++++++++---------------
popbio-1.1.9/popbio/man/teasel.Rd | 2 -
popbio-1.1.9/popbio/man/test.census.Rd | 24 ++++++------
popbio-1.1.9/popbio/man/vitalsens.Rd | 6 +--
popbio-1.1.9/popbio/man/woodpecker.Rd | 4 ++
21 files changed, 97 insertions(+), 98 deletions(-)
posted at: 17:16 | path: /cran/updated | permanent link to this entry
Title: Partially-observed Markov processes
Description: Inference methods for partially-observed Markov processes
pomp-0.19-1/pomp/R/print-pomp.R |only
pomp-0.19-1/pomp/inst/include/euler.h |only
pomp-0.19-1/pomp/inst/include/lookup_table.h |only
pomp-0.19-1/pomp/src/euler.h |only
pomp-0.19-1/pomp/src/lookup_table.h |only
pomp-0.20-2/pomp/DESCRIPTION | 6
pomp-0.20-2/pomp/NAMESPACE | 20 -
pomp-0.20-2/pomp/R/aaa.R | 100 +++++
pomp-0.20-2/pomp/R/compare.mif.R |only
pomp-0.20-2/pomp/R/dmeasure-pomp.R | 12
pomp-0.20-2/pomp/R/euler.R | 60 ++-
pomp-0.20-2/pomp/R/init.state-pomp.R | 1
pomp-0.20-2/pomp/R/mif-methods.R | 26 +
pomp-0.20-2/pomp/R/mif.R | 25 +
pomp-0.20-2/pomp/R/plot-pomp.R | 12
pomp-0.20-2/pomp/R/pomp-methods.R | 49 ++
pomp-0.20-2/pomp/R/pomp.R | 288 +++++++++++++++--
pomp-0.20-2/pomp/R/rmeasure-pomp.R | 12
pomp-0.20-2/pomp/R/simulate-pomp.R | 5
pomp-0.20-2/pomp/R/skeleton-pomp.R |only
pomp-0.20-2/pomp/data/ou2.rda |binary
pomp-0.20-2/pomp/inst/ChangeLog |only
pomp-0.20-2/pomp/inst/NEWS |only
pomp-0.20-2/pomp/inst/doc/compiled_code_in_pomp.Rnw | 123 -------
pomp-0.20-2/pomp/inst/doc/compiled_code_in_pomp.pdf |binary
pomp-0.20-2/pomp/inst/doc/intro_to_pomp.Rnw | 87 ++---
pomp-0.20-2/pomp/inst/doc/intro_to_pomp.pdf |binary
pomp-0.20-2/pomp/inst/examples/sir.R | 251 ++++++++------
pomp-0.20-2/pomp/inst/examples/sir.c | 104 ++++--
pomp-0.20-2/pomp/inst/include/pomp.h |only
pomp-0.20-2/pomp/man/dmeasure-pomp.Rd | 5
pomp-0.20-2/pomp/man/dprocess-pomp.Rd | 88 ++---
pomp-0.20-2/pomp/man/euler.Rd | 154 +++------
pomp-0.20-2/pomp/man/eulermultinom.Rd | 2
pomp-0.20-2/pomp/man/mif-class.Rd | 15
pomp-0.20-2/pomp/man/mif-methods.Rd | 25 +
pomp-0.20-2/pomp/man/mif.Rd | 5
pomp-0.20-2/pomp/man/pomp-class.Rd | 109 +-----
pomp-0.20-2/pomp/man/pomp-methods.Rd |only
pomp-0.20-2/pomp/man/pomp.Rd | 142 +++++---
pomp-0.20-2/pomp/man/rmeasure-pomp.Rd | 38 +-
pomp-0.20-2/pomp/man/skeleton-pomp.Rd |only
pomp-0.20-2/pomp/src/bspline.c | 2
pomp-0.20-2/pomp/src/dmeasure.c | 259 +++++++++++++--
pomp-0.20-2/pomp/src/dprocess.c | 32 +
pomp-0.20-2/pomp/src/dsobol.c | 2
pomp-0.20-2/pomp/src/euler.c | 336 ++++++++++++++++----
pomp-0.20-2/pomp/src/eulermultinom.c | 2
pomp-0.20-2/pomp/src/initstate.c | 47 ++
pomp-0.20-2/pomp/src/lookup_table.c | 49 ++
pomp-0.20-2/pomp/src/ou2.c | 200 ++---------
pomp-0.20-2/pomp/src/pomp.h | 228 ++++++++-----
pomp-0.20-2/pomp/src/pomp_fun.c |only
pomp-0.20-2/pomp/src/pomp_internal.h |only
pomp-0.20-2/pomp/src/resample.c | 2
pomp-0.20-2/pomp/src/rmeasure.c | 249 ++++++++++++--
pomp-0.20-2/pomp/src/rprocess.c | 30 +
pomp-0.20-2/pomp/src/sir.c | 104 ++++--
pomp-0.20-2/pomp/src/skeleton.c |only
pomp-0.20-2/pomp/tests/ou2-kalman.R | 18 -
pomp-0.20-2/pomp/tests/ou2-kalman.Rout.save |only
pomp-0.20-2/pomp/tests/ou2-mif.R | 22 -
pomp-0.20-2/pomp/tests/ou2-mif.Rout.save |only
pomp-0.20-2/pomp/tests/ou2-simulate.Rout.save |only
pomp-0.20-2/pomp/tests/rw2.R | 137 +++++---
pomp-0.20-2/pomp/tests/rw2.Rout.save |only
pomp-0.20-2/pomp/tests/sir.R |only
pomp-0.20-2/pomp/tests/sir.Rout.save |only
68 files changed, 2287 insertions(+), 1196 deletions(-)
posted at: 17:16 | path: /cran/updated | permanent link to this entry
Title: Political Science Computational Laboratory, Stanford University
Description: Bayesian analysis of item-response theory (IRT) models, roll call analysis;
computing highest density regions; maximum likelihood estimation of
zero-inflated and hurdle models for count data; goodness-of-fit measures for
GLMs; data sets used in writing and teaching at the Political Science
Computational Laboratory; seats-votes curves.
DESCRIPTION | 6 -
HISTORY | 9 ++
R/dropRollCall.r | 157 ++++++++++++++++++++++++++++++++---------
R/ideal.r | 10 ++
R/igamma.r | 20 +++--
R/margins.rollcall.r | 3
R/plot.ideal.r | 8 +-
R/postProcess.r | 33 ++++----
R/rollcall.r | 114 +++++++++++++++++++++--------
R/summary.ideal.r | 34 ++++++--
data/presidentialElections.rda |only
data/s109.rda |binary
inst/doc/.build.timestamp |only
inst/doc/auto/countreg.el | 17 +---
inst/doc/countreg.pdf |binary
man/dropRollCall.Rd | 66 +++++++++++++----
man/dropUnanimous.Rd | 2
man/hitmiss.Rd | 3
man/idealToMCMC.Rd | 5 -
man/plot.ideal.Rd | 7 +
man/presidentialElections.Rd |only
man/readKH.Rd | 5 -
man/s109.Rd | 38 +++++----
man/simpi.Rd | 4 -
man/summary.rollcall.Rd | 6 +
25 files changed, 388 insertions(+), 159 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Estimate a Log-Concave Probability Density from iid Observations
Description: Given independent and identically distributed observations X(1), ..., X(n), this package allows to
compute a concave, piecewise linear function phi on [X(1), X(n)] with knots only in {X(1), X(2), ..., X(n)}
such that L(phi) = sum_{i=1}^n W(i)*phi(X(i)) - int_{X(1)}^{X(n)} exp(phi(x)) dx is maximal, for some
weights W(1), ..., W(n) s.t. sum_{i=1}^n W(i) = 1. According to the results in Duembgen and Rufibach (2008),
this function phi maximizes the ordinary log-likelihood sum_{i=1}^n W(i)*phi(X(i))
under the constraint that phi is concave. The corresponding function exp(phi) is a log-concave probability density.
Two algorithms are offered: An active set algorithm and one based on the pool-adjacent-violaters algorithm.
DESCRIPTION | 14
R/intF.r | 4
inst/doc/logcondens_vignette.pdf | 751 +++++++++++++++++++--------------------
man/Jfunctions.Rd | 4
man/Lhat_eta.Rd | 4
man/Local_LL.Rd | 4
man/Local_LL_all.Rd | 4
man/MLE.Rd | 4
man/activeSetLogCon.Rd | 12
man/activeSetRoutines.Rd | 4
man/evaluateLogConDens.Rd | 4
man/icmaLogCon.Rd | 4
man/intECDF.Rd | 10
man/intF.Rd | 16
man/isoMean.Rd | 4
man/logcondens-package.Rd | 22 -
man/qloglin.Rd | 4
man/quadDeriv.Rd | 4
man/quantilesLogConDens.Rd | 4
man/reparametrizations.Rd | 4
man/robust.Rd | 4
21 files changed, 447 insertions(+), 438 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Non-additive measure and integral manipulation functions
Description: Kappalab, which stands for "laboratory for capacities", is an S4 tool box for capacity (or non-additive measure, fuzzy measure) and integral manipulation on a finite setting. It contains routines for handling various types of set functions such as games or capacities. It can be used to compute several non-additive integrals: the Choquet integral, the Sugeno integral, and the symmetric and asymmetric Choquet integrals. An analysis of capacities in terms of decision behavior can be performed through the computation of various indices such as the Shapley value, the interaction index, the orness degree, etc. The well-known Möbius transform, as well as other equivalent representations of set functions can also be computed. Kappalab further contains seven capacity identification routines: three least squares based approaches, a method based on linear programming, a maximum entropy like method based on variance minimization, a minimum distance approach and an unsupervised approach grounded on parametric entropies. The functions contained in Kappalab can for instance be used in the framework of multicriteria decision making or cooperative game theory.
kappalab-0.4-1/kappalab/man/round-methods.Rd |only
kappalab-0.4-3/kappalab/DESCRIPTION | 6 +++---
kappalab-0.4-3/kappalab/NAMESPACE | 2 +-
kappalab-0.4-3/kappalab/R/AllGeneric.R | 6 +++---
kappalab-0.4-3/kappalab/R/ls.ranking.capa.ident.R | 12 +++++++++---
kappalab-0.4-3/kappalab/R/superclass.set.func.R | 2 +-
kappalab-0.4-3/kappalab/man/Choquet.integral-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Mobius-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Mobius.capacity-class.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Mobius.card.set.func-class.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Mobius.game-class.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Mobius.set.func-class.Rd | 6 +++---
kappalab-0.4-3/kappalab/man/Sipos.integral-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/Sugeno.integral-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/entropy-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/favor-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/is.kadditive-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/is.monotone-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/is.normalized-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/ls.ranking.capa.ident.Rd | 2 +-
kappalab-0.4-3/kappalab/man/rnd-methods.Rd |only
kappalab-0.4-3/kappalab/man/show-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/superclass.set.func-class.Rd | 6 +++---
kappalab-0.4-3/kappalab/man/to.data.frame-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/variance-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/veto-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/man/zeta-methods.Rd | 2 +-
kappalab-0.4-3/kappalab/src/core.c | 4 ++++
28 files changed, 45 insertions(+), 35 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, ...
Description: Functions for reading and writing data stored by statistical
packages such as Minitab, S, SAS, SPSS, Stata, Systat, ...,
and for reading and writing .dbf (dBase) files.
ChangeLog | 43 ++++--
DESCRIPTION | 6
K_Van_Dijck_patch |only
K_Van_Dijck_patch-2 |only
src/SASxport.c | 7 -
src/minitab.c | 5
src/sfm-read.c | 72 ++++++++++-
src/sfm-read.c.orig |only
src/sfm-read.c.rej |only
src/spss.c | 5
src/stataread.c | 7 -
src/var.h.in | 12 +
src/var.h.in.orig |only
src/var.h.in.rej |only
tests/sas.R | 1
tests/spss.R | 70 +++++++---
tests/spss.Rout.save | 326 ++++++++-------------------------------------------
tests/spss_long.sav |only
18 files changed, 230 insertions(+), 324 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: A Package for Performing a Bayesian Analysis of Change Point Problems
Description: An implementation of the Barry and Hartigan (1993) product partition model for the standard change point problem using Markov Chain Monte Carlo.
DESCRIPTION | 23 +++---
NAMESPACE | 2
R/bcp.R | 88 ++++++++++++++++++++++++-
R/output.R | 5 +
man/RealInt.Rd | 39 ++++++-----
man/bcp.Rd | 142 +++++++++++++++++++++++++----------------
man/coriell.Rd | 107 ++++++++++++++++---------------
man/fitted.bcp.Rd | 150 +++++++++++--------------------------------
man/interval.prob.Rd |only
man/plot.bcp.Rd | 154 ++++++++++++---------------------------------
man/print.bcp.Rd | 170 +++++++++++++++----------------------------------
man/residuals.bcp.Rd | 149 +++++++++++--------------------------------
man/summary.bcp.Rd | 174 ++++++++++++++++-----------------------------------
13 files changed, 496 insertions(+), 707 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Subset AR Model Fitting
Description: Complete functions are given for model identification, estimation and diagnostic checking for AR and subset AR models. Two types of subset AR models are supported. One family of subset AR models, denoted by ARp, is formed by taking subet of the original AR coefficients and in the other, denoted by ARz, subsets of the partial autocorrelations are used. The main advantage of the ARz model is its applicability to very large order models.
DESCRIPTION | 6 +++---
R/cts.R | 6 +++++-
man/FitAR-package.Rd | 4 ++--
man/cts.Rd | 36 +++++++++++++++++++++++++++++++++---
4 files changed, 43 insertions(+), 9 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Creation and evaluation of Acceptance Sampling Plans
Description: This package provides functionality for creating and
evaluating acceptance sampling plans. Plans can be single,
double or multiple sampling plans
DESCRIPTION | 4 ++--
inst |only
2 files changed, 2 insertions(+), 2 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entryTue, 15 Jul 2008
Title: Duncan test, Tukey test and Scott-Knott test.
Description: The package contains functions to compare and group means.
DESCRIPTION | 6 +++---
R/LScottKnott.aov.r | 34 +++++++++++++++++-----------------
man/laercio-package.Rd | 4 ++--
3 files changed, 22 insertions(+), 22 deletions(-)
posted at: 17:16 | path: /cran/updated | permanent link to this entry
Title: Inequality constrained inference in linear normal situations
Description: This package implements parameter estimation in normal (linear) models under linear equality and inequality constraints and implements normal likelihood ratio tests involving inequality-constrained hypotheses. For inequality-constrained linear models, averaging over R-squared for different orderings of regressors is also included.
ic.infer-0.7/ic.infer/COPYING |only
ic.infer-0.7/ic.infer/COPYRIGHT |only
ic.infer-0.8/ic.infer/DESCRIPTION | 10 ++++-----
ic.infer-0.8/ic.infer/LICENSE |only
ic.infer-0.8/ic.infer/NAMESPACE | 2 -
ic.infer-0.8/ic.infer/R/all.R2.R |only
ic.infer-0.8/ic.infer/R/ic.test.R | 7 +++++-
ic.infer-0.8/ic.infer/R/ic.weights.R | 34 +++++++++++++++++++++++----------
ic.infer-0.8/ic.infer/R/or.relimp.R |only
ic.infer-0.8/ic.infer/R/summary.orlm.R | 9 +++++++-
ic.infer-0.8/ic.infer/inst |only
ic.infer-0.8/ic.infer/man/or.relimp.rd |only
ic.infer-0.8/ic.infer/man/orlm.rd | 13 +++++++-----
13 files changed, 52 insertions(+), 23 deletions(-)
posted at: 17:16 | path: /cran/updated | permanent link to this entry
Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing lm, glm, mer and polr outputs.
CHANGELOG | 5 +++
DESCRIPTION | 10 +++---
R/coefplot.R | 82 ++++++++++++++++++++++++++++++++++++--------------------
man/coefplot.Rd | 21 +++++---------
4 files changed, 72 insertions(+), 46 deletions(-)
posted at: 17:16 | path: /cran/updated | permanent link to this entry
Title: Whole Genome Average Interval Mapping for QTL detection using mixed models
Description: This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL's in linkage maps.
DESCRIPTION | 4 ++--
R/wgaim.R | 41 +++++++++++++++++++++++------------------
man/read.interval.Rd | 2 +-
man/wgaim-internal.Rd | 11 +++++------
4 files changed, 31 insertions(+), 27 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Sensitivity Analysis
Description: A collection of functions for factor screening and
global sensitivity analysis of model output.
sensitivity-1.3-1/sensitivity/HISTORY |only
sensitivity-1.3-1/sensitivity/R/fast_saltelli99.R |only
sensitivity-1.3-1/sensitivity/R/generic.R |only
sensitivity-1.3-1/sensitivity/R/plot.R |only
sensitivity-1.3-1/sensitivity/R/sobol_saltelli02.R |only
sensitivity-1.3-1/sensitivity/R/sobol_sobol93.R |only
sensitivity-1.3-1/sensitivity/R/srcpcc.R |only
sensitivity-1.3-1/sensitivity/TODO |only
sensitivity-1.3-1/sensitivity/inst |only
sensitivity-1.3-1/sensitivity/man/fast.Rd |only
sensitivity-1.3-1/sensitivity/man/srcpcc.Rd |only
sensitivity-1.3-1/sensitivity/man/tell.Rd |only
sensitivity-1.4-0/sensitivity/COPYRIGHT | 11
sensitivity-1.4-0/sensitivity/DESCRIPTION | 22
sensitivity-1.4-0/sensitivity/LICENSE | 60 +-
sensitivity-1.4-0/sensitivity/NAMESPACE | 43 +
sensitivity-1.4-0/sensitivity/R/base.R |only
sensitivity-1.4-0/sensitivity/R/bootstats.R | 46 -
sensitivity-1.4-0/sensitivity/R/fast99.R |only
sensitivity-1.4-0/sensitivity/R/morris.R | 374 ++++++---------
sensitivity-1.4-0/sensitivity/R/morris_oat.R |only
sensitivity-1.4-0/sensitivity/R/morris_sfd.R |only
sensitivity-1.4-0/sensitivity/R/morris_simplex.R |only
sensitivity-1.4-0/sensitivity/R/nodeplot.R |only
sensitivity-1.4-0/sensitivity/R/pcc.R |only
sensitivity-1.4-0/sensitivity/R/sb.R |only
sensitivity-1.4-0/sensitivity/R/sobol.R |only
sensitivity-1.4-0/sensitivity/R/sobol2002.R |only
sensitivity-1.4-0/sensitivity/R/src.R |only
sensitivity-1.4-0/sensitivity/R/template_replace.R |only
sensitivity-1.4-0/sensitivity/R/testmodels.R | 76 +--
sensitivity-1.4-0/sensitivity/man/decoupling.Rd |only
sensitivity-1.4-0/sensitivity/man/fast99.Rd |only
sensitivity-1.4-0/sensitivity/man/morris.Rd | 187 ++++---
sensitivity-1.4-0/sensitivity/man/pcc.Rd |only
sensitivity-1.4-0/sensitivity/man/sb.Rd |only
sensitivity-1.4-0/sensitivity/man/sensitivity-package.Rd | 115 +---
sensitivity-1.4-0/sensitivity/man/sobol.Rd | 139 ++---
sensitivity-1.4-0/sensitivity/man/sobol2002.Rd |only
sensitivity-1.4-0/sensitivity/man/src.Rd |only
sensitivity-1.4-0/sensitivity/man/template_replace.Rd |only
sensitivity-1.4-0/sensitivity/man/testmodels.Rd | 24
42 files changed, 557 insertions(+), 540 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Random Effects Latent Class Analysis
Description: Fits random effects latent class models, as well as standard latent class models.
DESCRIPTION | 6 +-
NAMESPACE | 1
R/plot.randomLCA.R | 9 ++++
R/summary.randomLCA.R | 89 +++++++++++++++++++++++------------------
inst/NEWS | 6 ++
inst/doc/randomLCA-example.Rnw | 16 ++++---
inst/doc/randomLCA-example.pdf |binary
7 files changed, 80 insertions(+), 47 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Functions for analyzing psychophysical data in R
Description: An assortment of functions that could be useful in analyzing data from pyschophysical experiments. It includes functions for calculating d' from several different experimental designs, links for mafc to be used with the binomial family in glm (and possibly other contexts) and self-Start functions for estimating gamma values for CRT screen calibrations.
DESCRIPTION | 8 ++++----
NAMESPACE | 4 +++-
R/gl.links.R |only
R/glm.lambda.R | 5 ++++-
R/psyfun.2asym.R |only
doc/TODO | 2 +-
inst/NEWS | 9 +++++++--
man/glm.WH.Rd | 11 ++++-------
man/glm.lambda.Rd | 11 ++++-------
man/logit.2asym.Rd |only
man/mafc.Rd | 9 +++------
man/probit.lambda.Rd | 11 ++++-------
man/psyfun.2asym.Rd |only
13 files changed, 34 insertions(+), 36 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: A GUI for interactive plots using GTK+
Description: A GTK+ graphical user interface for viewing and interacting with R plots.
It tries to work out the structure of a plot, in order to interact with it.
The built-in features include: zooming the data space, identifying data points,
editing and annotating the plot, and saving to a file. New tools can be defined.
Also includes latticist, a lattice-based tool for exploratory visualisation.
DESCRIPTION | 14 +--
NAMESPACE | 8 ++
R/API.R | 73 +++++++++++++++-----
R/latticist.R |only
R/playTools_clickhandler.R |only
R/playTools_coords.R | 28 ++-----
R/playTools_edit.call.R | 2
R/playTools_identify.R | 161 ++++++++++++++++++++++++++-------------------
R/playTools_zero.R | 27 ++++++-
R/playTools_zoom.R | 79 +++++++---------------
R/playwith.R | 40 -----------
R/settings.R | 3
inst/NEWS | 52 ++++++++++++++
man/callArg.Rd | 8 +-
man/cutEq.Rd |only
man/latticist.Rd |only
man/marginals.Rd |only
man/playwith.Rd | 12 +--
18 files changed, 295 insertions(+), 212 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Just-in-time compiler for the R language
Description:
Enable just-in-time (JIT) compilation.
The functions in this package are useful only under Ra and have no effect under R.
See \url{http://www.milbo.users.sonic.net/ra/index.html}.
This version of the jit package is for Ra 1.1.1 and higher.
DESCRIPTION | 6 +++---
NEWS | 2 ++
man/jit.Rd | 3 ++-
3 files changed, 7 insertions(+), 4 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Multivariate Adaptive Regression Spline Models
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression Splines".
(The term "MARS" is copyrighted and thus not used in the name of the package.)
DESCRIPTION | 4 ++--
NEWS | 3 +++
man/format.earth.Rd | 8 ++++----
src/tests/earth.times.bat | 2 +-
src/tests/test.earth.full.Rout.save | 2 +-
src/tests/test.earthc.mak | 2 +-
src/tests/test.plotmo.Rout.save | 18 ++++--------------
7 files changed, 16 insertions(+), 23 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Evaluation and experimental design for binomial group testing
Description: Confidence intervals and tests for a single binomial proportion.
Exact and approximate methods for equal group size and exact method for designs with unequal group sizes.
Exact, Score and Wald Test for standard binomial and binomial group testing for designs with equal group size.
Experimental design depending on power, controlling bias and mse of the estimator
depending on group size and sample size, and calculation of expected interval width.
DESCRIPTION | 12 +++++++-----
R/plot.nDesign.R | 19 +++++++++++--------
R/plot.sDesign.R | 17 ++++++++++++-----
R/print.bgtCI.R | 10 +++++++---
R/print.bgtTest.R | 9 +++++++--
R/print.binDesign.R | 9 +++++++--
R/print.nDesign.R | 18 +++++++++++-------
R/print.sDesign.R | 13 +++++++++----
man/bgtCI.Rd | 16 ++++++++++------
man/bgtPower.Rd | 9 ++++++---
man/bgtTest.Rd | 8 +++-----
man/bgtWidth.Rd | 9 ++++++---
man/bgtvs.Rd | 6 +++---
man/binCI.Rd | 6 +++---
man/binDesign.Rd | 11 ++++++++---
man/binGroup.Rd |only
man/binPower.Rd | 4 ++--
man/binTest.Rd | 6 ++----
man/binWidth.Rd | 7 ++-----
man/estDesign.Rd | 1 -
man/nDesign.Rd | 4 ++--
man/plot.binDesign.Rd | 2 --
man/plot.nDesign.Rd | 3 +--
man/plot.sDesign.Rd | 1 -
man/print.bgtCI.Rd | 3 +--
man/print.bgtvs.Rd | 7 +++----
man/print.binDesign.Rd | 4 ++--
man/print.nDesign.Rd | 6 +-----
man/print.sDesign.Rd | 4 +---
man/sDesign.Rd | 9 ++++++---
30 files changed, 133 insertions(+), 100 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entryMon, 14 Jul 2008
Title: svcR package
Description: svcR implements a support vector machine technique for clustering
DESCRIPTION | 4 ++--
R/svcR.R | 2 +-
src/svcR.c | 27 ++++++++++++++++-----------
3 files changed, 19 insertions(+), 14 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Functions and Exampels for "Software for Data Analysis"
Description: Functions, examples and other software related to the book
"Software for Data Analysis: Programming with R". See
package?SoDA for an overview.
DESCRIPTION | 13 +--
NAMESPACE | 5 -
R/demoSource.R | 125 ++++++++++++++++++++++++++---------
R/localRFiles.R |only
R/recoverHandler.R | 2
R/runExample.R |only
R/showEnv.R |only
R/tryRequire.R |only
R/zzz.R | 10 --
data/.exampleFiles.csv |only
data/examplePages.R |only
data/examplePages.csv |only
exec |only
inst/Examples/GPSTrackClass.R |only
inst/Examples/GPSUtils.R |only
inst/Examples/IQclosure.R |only
inst/Examples/IQreplace.R |only
inst/Examples/PerlChunks.perl |only
inst/Examples/PerlFieldsToLines.perl |only
inst/Examples/PerlReadRepeated.perl |only
inst/Examples/SoDAinit.c |only
inst/Examples/arrowFactor.R |only
inst/Examples/baseOpFuns.R |only
inst/Examples/bbMargins.R |only
inst/Examples/binaryCount.R |only
inst/Examples/binaryRep_3_15.R |only
inst/Examples/binaryRep_45.R |only
inst/Examples/bitRepExample.R |only
inst/Examples/changeFunctions.R |only
inst/Examples/cloudsModelFrame.R | 3
inst/Examples/dataFrame.R |only
inst/Examples/dataFrameAsDataFrame.R |only
inst/Examples/dateStuff.perl |only
inst/Examples/dowNames.R |only
inst/Examples/dropFormula.R |only
inst/Examples/dropModel.R |only
inst/Examples/dummyQuantile.R |only
inst/Examples/fieldsToLines.R |only
inst/Examples/findDateForm.perl |only
inst/Examples/geoXY.R |only
inst/Examples/gpsScatterPlot.R |only
inst/Examples/gpstrack.txt |only
inst/Examples/graphicMargins.R |only
inst/Examples/gridSegments.R |only
inst/Examples/hashWords.perl |only
inst/Examples/htmlOut.perl |only
inst/Examples/implicitUpdate.R |only
inst/Examples/implicitUpdateEx.R |only
inst/Examples/implicitWith.R |only
inst/Examples/indexingFirst.R |only
inst/Examples/irisBwplot.R |only
inst/Examples/irregTS.R |only
inst/Examples/madCall.R |only
inst/Examples/madMatch.R |only
inst/Examples/marsPlot.R |only
inst/Examples/marsPlot2.R |only
inst/Examples/marsPlot3.R |only
inst/Examples/marsRead.R |only
inst/Examples/numericComparison.R |only
inst/Examples/perlMonths.perl |only
inst/Examples/perpOperator.R |only
inst/Examples/plotGPS.R |only
inst/Examples/plotGPS1.R |only
inst/Examples/plotGPSArrows.R |only
inst/Examples/plotGPSArrows2.R |only
inst/Examples/plotGPSTrackMethod.R |only
inst/Examples/quickBrownFox.R |only
inst/Examples/quickBrownFox2.R |only
inst/Examples/quoteWords.R |only
inst/Examples/randomSlippageTest.R |only
inst/Examples/readRepeated.R |only
inst/Examples/recoverHandler.R |only
inst/Examples/regForColorPlot.R |only
inst/Examples/replaceChar.R |only
inst/Examples/replaceLong.R |only
inst/Examples/scaleVisual.R |only
inst/Examples/scanGPS1.R |only
inst/Examples/showPrimTypes.R |only
inst/Examples/showPrimitives.R |only
inst/Examples/speedGPS.R |only
inst/Examples/splitRepeated.R |only
inst/Examples/stateCities.txt |only
inst/Examples/subsetMethodTrack.R |only
inst/Examples/testSdFun.R |only
inst/Examples/trackArrows.R |only
inst/Examples/trackClass.R |only
inst/Examples/trackCompareMethods.R |only
inst/Examples/trackEqualMethods.R |only
inst/Examples/trackInitialize.R |only
inst/Examples/trackNumeric.R |only
inst/Examples/trackNumericOps.R |only
inst/Examples/trackNumericOps2.R |only
inst/Examples/trellisPars.R |only
inst/Examples/triDiag.R |only
inst/Examples/triDiag2.R |only
inst/Examples/triDiag3.R |only
inst/Examples/undefinedGets.R |only
inst/Examples/undefinedVector.R |only
inst/Examples/weather1.csv |only
inst/Examples/weather1CSV.csv |only
inst/doc |only
inst/examplePages.csv |only
man/SoDA-package.Rd | 36 ++++++++--
man/chunksAdd.Rd | 14 +--
man/demoSource.Rd | 55 ++++++++++++---
man/demoSourceClass.Rd | 7 +
man/exampleFiles.Rd | 50 +++++++++++---
man/geoDist.Rd | 2
man/localRFiles.Rd |only
man/runExample.Rd |only
man/showEnv.Rd |only
man/simulationResult.Rd | 5 -
man/tryRequire.Rd |only
tests/chunksAdd.R | 1
114 files changed, 235 insertions(+), 93 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Sample Selection Models
Description: Estimation of Sample Selection Models
DESCRIPTION | 8 -
INDEX | 2
data/nlswork.rda |only
inst |only
man/nlswork.Rd |only
tests/heckit.Rout.save | 269 +++++++++++++++++++++++-----------------------
tests/probit.Rout.save | 10 +
tests/selection.Rout.save | 12 +-
8 files changed, 164 insertions(+), 137 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Applied Psychometric Theory
Description: Contains functions useful for correlation theory,
meta-analysis (validity-generalization),
reliability, item analysis, inter-rater reliability,
and classical utility
DESCRIPTION | 8 +++---
R/item.exam.R | 58 +++++++++++++++++++++++++++-----------------
README.txt | 3 ++
man/CAFAA.Rd | 3 --
man/CI.Rsq.Rd | 3 --
man/CI.Rsqlm.Rd | 3 --
man/CI.tscore.Rd | 3 --
man/CIr.Rd | 3 --
man/CIrb.Rd | 3 --
man/CIrdif.Rd | 3 --
man/CIz.Rd | 3 --
man/CVF.Rd | 3 --
man/CVratio.Rd | 3 --
man/ClassUtil.Rd | 3 --
man/CredIntRho.Rd | 3 --
man/EnterMeta.Rd | 3 --
man/Est.true.Rd | 3 --
man/FileDrawer.Rd | 4 ---
man/FunnelPlot.Rd | 3 --
man/ICC.CI.Rd | 3 --
man/ICC.lme.Rd | 3 --
man/MetaTable.Rd | 3 --
man/Qrbar.Rd | 3 --
man/Qrho.Rd | 4 ---
man/SBrel.Rd | 3 --
man/SE.Meas.Rd | 3 --
man/SErbar.Rd | 3 --
man/SEz.Rd | 3 --
man/TestScores.Rd | 2 -
man/Utility.Rd | 3 --
man/alpha.CI.Rd | 3 --
man/alpha.Rd | 3 --
man/artifacts.Rd | 3 --
man/cRRr.Rd | 3 --
man/discrim.Rd | 3 --
man/item.exam.Rd | 13 +++++----
man/psychometric-package.Rd | 20 +++++++++------
man/pvaaa.Rd | 3 --
man/pvse.Rd | 3 --
man/r.nil.Rd | 3 --
man/r2z.Rd | 3 --
man/rbar.Rd | 3 --
man/rdif.nul.Rd | 3 --
man/rhoCA.Rd | 3 --
man/varAV.Rd | 3 --
man/varRCA.Rd | 3 --
man/varRes.Rd | 3 --
man/varResT.Rd | 3 --
man/vare.Rd | 4 ---
man/varr.Rd | 3 --
man/z2r.Rd | 2 -
51 files changed, 108 insertions(+), 133 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Mesh generation and surface tesselation
Description: This package makes the qhull library (www.qhull.org) available in R,
in a similar manner as in Octave and MATLAB. Qhull computes convex hulls,
Delaunay triangulations, halfspace intersections about a point, Voronoi diagrams,
furthest-site Delaunay triangulations, and furthest-site Voronoi diagrams.
It runs in 2-d, 3-d, 4-d, and higher dimensions. It implements the Quickhull
algorithm for computing the convex hull. Qhull does not support constrained
Delaunay triangulations, or mesh generation of non-convex objects, but the
package does include some R functions that allow for this. Currently the package
only gives access to Delaunay triangulation and convex hull computation.
geometry-0.1-2/geometry/._COPYING |only
geometry-0.1-2/geometry/._DESCRIPTION |only
geometry-0.1-2/geometry/._NAMESPACE |only
geometry-0.1-2/geometry/._R |only
geometry-0.1-2/geometry/._TODO |only
geometry-0.1-2/geometry/._configure |only
geometry-0.1-2/geometry/._configure.ac |only
geometry-0.1-2/geometry/._configure.win |only
geometry-0.1-2/geometry/._inst |only
geometry-0.1-2/geometry/._man |only
geometry-0.1-2/geometry/._src |only
geometry-0.1-2/geometry/inst/._doc |only
geometry-0.1-2/geometry/inst/doc/._Announce.txt |only
geometry-0.1-2/geometry/inst/doc/._COPYING.txt |only
geometry-0.1-2/geometry/inst/doc/._File_id.diz |only
geometry-0.1-2/geometry/inst/doc/._MODIFIED.txt |only
geometry-0.1-2/geometry/inst/doc/._README.txt |only
geometry-0.1-2/geometry/inst/doc/._REGISTER.txt |only
geometry-0.1-2/geometry/inst/doc/._html |only
geometry-0.1-2/geometry/inst/doc/._index.htm |only
geometry-0.1-2/geometry/inst/doc/._src |only
geometry-0.1-2/geometry/inst/doc/html/._index.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qconvex.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qdelau_f.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qdelaun.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qh--4d.gif |only
geometry-0.1-2/geometry/inst/doc/html/._qh--cone.gif |only
geometry-0.1-2/geometry/inst/doc/html/._qh--dt.gif |only
geometry-0.1-2/geometry/inst/doc/html/._qh--geom.gif |only
geometry-0.1-2/geometry/inst/doc/html/._qh--half.gif |only
geometry-0.1-2/geometry/inst/doc/html/._qh--rand.gif |only
geometry-0.1-2/geometry/inst/doc/html/._qh-eg.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qh-faq.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qh-get.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qh-impre.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qh-in.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qh-optc.htm |only
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geometry-0.1-2/geometry/inst/doc/html/._qh-optp.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qh-optq.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qh-optt.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qh-quick.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qhalf.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qhull.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qhull.man |only
geometry-0.1-2/geometry/inst/doc/html/._qhull.txt |only
geometry-0.1-2/geometry/inst/doc/html/._qvoron_f.htm |only
geometry-0.1-2/geometry/inst/doc/html/._qvoronoi.htm |only
geometry-0.1-2/geometry/inst/doc/html/._rbox.htm |only
geometry-0.1-2/geometry/inst/doc/html/._rbox.man |only
geometry-0.1-2/geometry/inst/doc/html/._rbox.txt |only
geometry-0.1-2/geometry/inst/doc/src/._Changes.txt |only
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geometry-0.1-2/geometry/src/Makevars |only
geometry-0.1-2/geometry/src/src/._Changes.txt |only
geometry-0.1-2/geometry/src/src/._Make-config.sh |only
geometry-0.1-2/geometry/src/src/._Makefile.txt |only
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geometry-0.1-2/geometry/src/src/._geom.c |only
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geometry-0.1-2/geometry/src/src/._geom.h |only
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geometry-0.1-2/geometry/src/src/._merge.h |only
geometry-0.1-2/geometry/src/src/._poly.c |only
geometry-0.1-2/geometry/src/src/._poly.h |only
geometry-0.1-2/geometry/src/src/._poly2.c |only
geometry-0.1-2/geometry/src/src/._qconvex.c |only
geometry-0.1-2/geometry/src/src/._qdelaun.c |only
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geometry-0.1-2/geometry/src/src/._qh-user.htm |only
geometry-0.1-2/geometry/src/src/._qhalf.c |only
geometry-0.1-2/geometry/src/src/._qhull.c |only
geometry-0.1-2/geometry/src/src/._qhull.h |only
geometry-0.1-2/geometry/src/src/._qhull_a.h |only
geometry-0.1-2/geometry/src/src/._qhull_interface.cpp |only
geometry-0.1-2/geometry/src/src/._qset.c |only
geometry-0.1-2/geometry/src/src/._qset.h |only
geometry-0.1-2/geometry/src/src/._qvoronoi.c |only
geometry-0.1-2/geometry/src/src/._rbox.c |only
geometry-0.1-2/geometry/src/src/._stat.c |only
geometry-0.1-2/geometry/src/src/._stat.h |only
geometry-0.1-2/geometry/src/src/._unix.c |only
geometry-0.1-2/geometry/src/src/._user.c |only
geometry-0.1-2/geometry/src/src/._user.h |only
geometry-0.1-2/geometry/src/src/._user_eg.c |only
geometry-0.1-2/geometry/src/src/._user_eg2.c |only
geometry-0.1-3/geometry/DESCRIPTION | 5 ++--
geometry-0.1-3/geometry/R/convhulln.R | 2 -
geometry-0.1-3/geometry/man/convhulln.Rd | 20 ++++++++++--------
geometry-0.1-3/geometry/src/._convhulln.c |only
geometry-0.1-3/geometry/src/._delaunayn.c |only
geometry-0.1-3/geometry/src/._global.c |only
geometry-0.1-3/geometry/src/convhulln.c | 6 +++--
geometry-0.1-3/geometry/src/src/__voronoi__.c |only
122 files changed, 20 insertions(+), 13 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Generalized Estimating Equation Package
Description: Generalized estimating equations solver for parameters in mean, scale, and correlation structures, through mean link, scale link, and correlation link. Can also handle clustered categorical responses.
ChangeLog | 6 ++++++
DESCRIPTION | 6 +++---
R/geeglm.R | 14 +++++++++++---
3 files changed, 20 insertions(+), 6 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
Description: Estimation, model selection and other aspects of statistical inference in Graphical Gaussian models with edge and vertex symmetries (Graphical Gaussian models with colours)
ChangeLog | 15 +++
DESCRIPTION | 9 +-
R/RCON-IPM5.R | 12 +-
R/add1drop1.R | 14 +--
R/cleverTraceMat.R | 3
R/comparecc.R | 99 ++++++++++++++++++++++++
R/display4.R | 41 +++++++++-
R/fitMain.R | 10 +-
R/rcox-ScoreMatching4.R | 34 +++++---
R/rcox4.R | 134 ++++++++++++++++-----------------
R/sets-SetOp-Lists.R | 23 +++++
R/stepwise4.R | 13 ---
R/update4.R | 99 ++++++++++++++----------
R/utility4.R | 10 +-
R/xxx2yyy.R | 92 +++++++++++++---------
R/zzz-generatingClasscImplementation.R | 19 ++++
R/zzz.R | 7 +
Wishlist.txt | 5 -
man/add1drop1.Rd | 4
man/internal.Rd | 3
man/rcox.Rd | 29 ++++---
man/update.Rd | 3
22 files changed, 464 insertions(+), 214 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Graphical Independence Networks
Description: A package for probability propagation in graphical independence networks, also known as probabilistic expert systems (which includes Bayesian networks as a special case).
ChangeLog | 7 +++++
DESCRIPTION | 7 +++--
R/TabOpArray.R | 55 ++++++++++++++++++++++++++++++++++++++++++++++-
R/display.R | 6 +++++
Wishlist.txt | 2 +
inst/doc/gRain-intro.pdf |binary
6 files changed, 73 insertions(+), 4 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Quantitative Psychology Tools
Description: Contains functions useful for data screening,
testing moderation, mediation and estimating power.
DESCRIPTION | 8 ++++----
man/Make.Z.Rd | 3 +--
man/QuantPsyc-package.Rd | 12 ++++++------
man/distInd.ef.Rd | 3 +--
man/distal.med.Rd | 3 +--
man/eda.uni.Rd | 3 +--
man/graph.mod.Rd | 3 +--
man/lm.beta.Rd | 3 +--
man/mean.center.Rd | 3 +--
man/moderate.lm.Rd | 3 +--
man/mult.norm.Rd | 3 +--
man/norm.Rd | 3 +--
man/plot.normX.Rd | 3 +--
man/powerF.Rd | 3 +--
man/proxInd.ef.Rd | 3 +--
man/proximal.med.Rd | 3 +--
man/sim.slopes.Rd | 5 +----
17 files changed, 25 insertions(+), 42 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Provides R-language code to examine Quantitative Risk Management concepts
Description: This is a free R-language library designed to accompany the book
Quantitative Risk Management: Concepts, Techniques and Tools by Alexander
J. McNeil, Rudiger Frey and Paul Embrechts. A separate SPlus version can be
downloaded from Alexander McNeil's URL at
http://www.ma.hw.ac.uk/~mcneil/book/QRMlib.html
DESCRIPTION | 6
inst/Chap5/S2-Archimedean.R | 79
inst/Chap5/S3-Fitting.R | 3
inst/Docs/QRMlib.pdf | 5912 ++++++++++++++++++++++----------------------
inst/README.txt | 4
man/0-QRMlib-package.Rd | 4
6 files changed, 3040 insertions(+), 2968 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis (Baseline, Normalization, Peak Detection,
PCA, PLS, Nearest Neigbourgt, Neural Network) developed to make easy this data analysis.
DESCRIPTION | 8 ++++----
R/Met.Outliers.R | 1 -
R/Met.PCA.R | 2 +-
R/Metabonomic.R | 6 +++---
4 files changed, 8 insertions(+), 9 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entry
Title: Bayesian Nonparametric and Semiparametric Analysis
Description:
This package contains functions to perform inference via
simulation from the posterior distributions for Bayesian nonparametric and
semiparametric models. Although the name of the package was motivated
by the Dirichlet Process prior, the package considers and will consider
other priors on functional spaces. So far, DPpackage includes models
considering Dirichlet Processes, Dependent Dirichlet Processes, Polya Trees,
Mixtures of Triangular distributions, and Random Bernstein polynomials priors. The package
also includes models considering Penalized B-Splines.
Currently the package includes semiparametric models for marginal and
conditional density estimation, ROC curve analysis,
interval censored data, binary regression models, generalized linear mixed
models, IRT type models, and generalized additive models. The package also contains functions
to compute Pseudo-Bayes factors for model comparison, and to elicitate the precision
parameter of the Dirichlet Process. To maximize computational efficiency,
the actual sampling for each model is done in compiled FORTRAN. The functions
return objects which can be subsequently analyzed with functions provided in
the coda package.
DPpackage-1.0-5/DPpackage/src/PTglmmgam.f |only
DPpackage-1.0-5/DPpackage/src/PTglmmlogit.f |only
DPpackage-1.0-5/DPpackage/src/PTglmmpois.f |only
DPpackage-1.0-5/DPpackage/src/PTglmmprob.f |only
DPpackage-1.0-5/DPpackage/src/PTlmm.f |only
DPpackage-1.0-5/DPpackage/src/PTolmmp.f |only
DPpackage-1.0-6/DPpackage/DESCRIPTION | 22 +++-
DPpackage-1.0-6/DPpackage/NAMESPACE | 46 +++++++++-
DPpackage-1.0-6/DPpackage/R/BDPdensity.R | 2
DPpackage-1.0-6/DPpackage/R/CSDPbinary.R | 4
DPpackage-1.0-6/DPpackage/R/DPMglmm.R | 2
DPpackage-1.0-6/DPpackage/R/DPMlmm.R | 2
DPpackage-1.0-6/DPpackage/R/DPMmeta.R | 2
DPpackage-1.0-6/DPpackage/R/DPMolmm.R | 2
DPpackage-1.0-6/DPpackage/R/DPMrandom.R | 2
DPpackage-1.0-6/DPpackage/R/DPbinary.R | 4
DPpackage-1.0-6/DPpackage/R/DPcaterpillar.R | 4
DPpackage-1.0-6/DPpackage/R/DPcdensity.R |only
DPpackage-1.0-6/DPpackage/R/DPdensity.R | 6 -
DPpackage-1.0-6/DPpackage/R/DPelicit.R | 4
DPpackage-1.0-6/DPpackage/R/DPglmm.R | 2
DPpackage-1.0-6/DPpackage/R/DPlmm.R | 4
DPpackage-1.0-6/DPpackage/R/DPmeta.R | 2
DPpackage-1.0-6/DPpackage/R/DPmultmeta.R |only
DPpackage-1.0-6/DPpackage/R/DPolmm.R | 2
DPpackage-1.0-6/DPpackage/R/DPpsBF.R | 4
DPpackage-1.0-6/DPpackage/R/DPrandom.R | 4
DPpackage-1.0-6/DPpackage/R/DPrasch.R | 4
DPpackage-1.0-6/DPpackage/R/DPraschpoisson.R | 4
DPpackage-1.0-6/DPpackage/R/DProc.R | 4
DPpackage-1.0-6/DPpackage/R/DPsurvint.R | 4
DPpackage-1.0-6/DPpackage/R/FPTbinary.R | 4
DPpackage-1.0-6/DPpackage/R/FPTrasch.R | 4
DPpackage-1.0-6/DPpackage/R/FPTraschpoisson.R | 4
DPpackage-1.0-6/DPpackage/R/HDPdensity.R |only
DPpackage-1.0-6/DPpackage/R/LDDPdensity.R |only
DPpackage-1.0-6/DPpackage/R/PSgam.R | 2
DPpackage-1.0-6/DPpackage/R/PTdensity.R | 2
DPpackage-1.0-6/DPpackage/R/PTlm.R | 2
DPpackage-1.0-6/DPpackage/R/PTmeta.R |only
DPpackage-1.0-6/DPpackage/R/PTrandom.R |only
DPpackage-1.0-6/DPpackage/R/Pbinary.R | 4
DPpackage-1.0-6/DPpackage/R/TDPdensity.R | 2
DPpackage-1.0-6/DPpackage/R/hidden.R | 10 +-
DPpackage-1.0-6/DPpackage/R/ps.R | 2
DPpackage-1.0-6/DPpackage/data/calgb.pred.rda |only
DPpackage-1.0-6/DPpackage/data/calgb.rda |only
DPpackage-1.0-6/DPpackage/man/DPMmeta.Rd | 4
DPpackage-1.0-6/DPpackage/man/DPcdensity.Rd |only
DPpackage-1.0-6/DPpackage/man/DPdensity.Rd | 4
DPpackage-1.0-6/DPpackage/man/DPmultmeta.Rd |only
DPpackage-1.0-6/DPpackage/man/DPrasch.Rd | 4
DPpackage-1.0-6/DPpackage/man/HDPdensity.Rd |only
DPpackage-1.0-6/DPpackage/man/LDDPdensity.Rd |only
DPpackage-1.0-6/DPpackage/man/PSgam.Rd | 4
DPpackage-1.0-6/DPpackage/man/PTmeta.Rd |only
DPpackage-1.0-6/DPpackage/man/PTrandom.Rd |only
DPpackage-1.0-6/DPpackage/man/calgb.Rd |only
DPpackage-1.0-6/DPpackage/man/calgb.pred.Rd |only
DPpackage-1.0-6/DPpackage/man/deterioration.Rd | 1
DPpackage-1.0-6/DPpackage/man/predict.HDPdensity.Rd |only
DPpackage-1.0-6/DPpackage/man/uniond.Rd | 5 -
DPpackage-1.0-6/DPpackage/src/DPMglmmlogit.f | 6 -
DPpackage-1.0-6/DPpackage/src/DPdensityreg.f |only
DPpackage-1.0-6/DPpackage/src/DPmultmeta.f |only
DPpackage-1.0-6/DPpackage/src/HDPdensity.c |only
DPpackage-1.0-6/DPpackage/src/HDPdensity.h |only
DPpackage-1.0-6/DPpackage/src/LDDPdensity.f |only
DPpackage-1.0-6/DPpackage/src/Makevars | 2
DPpackage-1.0-6/DPpackage/src/ToolsBDP.f | 17 ++-
DPpackage-1.0-6/DPpackage/src/ToolsBayes.c |only
DPpackage-1.0-6/DPpackage/src/ToolsBayes.h |only
DPpackage-1.0-6/DPpackage/src/ToolsCCdflib.c |only
DPpackage-1.0-6/DPpackage/src/ToolsCCdflib.h |only
DPpackage-1.0-6/DPpackage/src/ToolsCMatrix.c |only
DPpackage-1.0-6/DPpackage/src/ToolsCMatrix.h |only
DPpackage-1.0-6/DPpackage/src/ToolsCdflib.f | 29 ++++--
DPpackage-1.0-6/DPpackage/src/ToolsCom.c |only
DPpackage-1.0-6/DPpackage/src/ToolsDDP.f |only
DPpackage-1.0-6/DPpackage/src/ToolsFortif.c |only
DPpackage-1.0-6/DPpackage/src/ToolsFortif.h |only
DPpackage-1.0-6/DPpackage/src/ToolsGiis.h |only
DPpackage-1.0-6/DPpackage/src/ToolsHMM.f |only
DPpackage-1.0-6/DPpackage/src/ToolsInterface.c |only
DPpackage-1.0-6/DPpackage/src/ToolsInterface.h |only
DPpackage-1.0-6/DPpackage/src/ToolsIpmpar.c |only
DPpackage-1.0-6/DPpackage/src/ToolsMathconst.h |only
DPpackage-1.0-6/DPpackage/src/ToolsMatrix.f | 90 ++++++++++++++++++++
DPpackage-1.0-6/DPpackage/src/ToolsMess.c |only
DPpackage-1.0-6/DPpackage/src/ToolsMess.h |only
DPpackage-1.0-6/DPpackage/src/ToolsNrutil.c |only
DPpackage-1.0-6/DPpackage/src/ToolsNrutil.h |only
DPpackage-1.0-6/DPpackage/src/ToolsPredictN.c |only
DPpackage-1.0-6/DPpackage/src/ToolsRand-nr.c |only
DPpackage-1.0-6/DPpackage/src/ToolsRand-nr.h |only
DPpackage-1.0-6/DPpackage/src/ToolsRand.c |only
DPpackage-1.0-6/DPpackage/src/ToolsRand.h |only
DPpackage-1.0-6/DPpackage/src/ToolsRanlib.c |only
DPpackage-1.0-6/DPpackage/src/ToolsRanlib.h |only
DPpackage-1.0-6/DPpackage/src/ToolsRegr.c |only
DPpackage-1.0-6/DPpackage/src/ToolsRegr.h |only
DPpackage-1.0-6/DPpackage/src/ToolsRfun.c | 5 +
DPpackage-1.0-6/DPpackage/src/ToolsRnumbers.f | 83 ++++++++++++++++++
DPpackage-1.0-6/DPpackage/src/ToolsSB.f |only
DPpackage-1.0-6/DPpackage/src/ToolsUnixrep.c |only
DPpackage-1.0-6/DPpackage/src/ToolsUnixrep.h |only
DPpackage-1.0-6/DPpackage/src/ToolsVector.c |only
DPpackage-1.0-6/DPpackage/src/ToolsVector.h |only
108 files changed, 330 insertions(+), 96 deletions(-)
posted at: 09:16 | path: /cran/updated | permanent link to this entrySat, 12 Jul 2008
Title: Linear mixed-effects models using S4 classes
Description: Fit linear and generalized linear mixed-effects models.
ChangeLog | 20 ++++
DESCRIPTION | 6 -
R/lmer.R | 150 +++++++++++++++++++++---------------
inst/doc/Implementation.pdf |binary
inst/doc/PLSvGLS.Rnw | 21 +++++
inst/doc/PLSvGLS.pdf |binary
inst/doc/Theory.pdf |binary
man/lmer.Rd | 15 ++-
src/lmer.c | 3
tests/nlmer.R | 13 +--
tests/nlmer.Rout.save | 180 +++++++++++++++++++++-----------------------
11 files changed, 236 insertions(+), 172 deletions(-)
posted at: 17:16 | path: /cran/updated | permanent link to this entry
Title: Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics".
Description: Data sets exemplifying statistical methods, and some
facilitatory utility functions used in
"Analyzing Linguistic Data: A practical introduction to
statistics using R", Cambridge University Press, 2008.
DESCRIPTION | 4 -
R/aovlmer.fnc.R | 9 +--
R/preparePredictor.fnc.R | 1
R/pvals.fnc.R | 128 ++++++++++++++++++-----------------------------
man/aovlmer.fnc.Rd | 10 +--
man/lexdec.Rd | 4 +
man/pvals.fnc.Rd | 9 ++-
7 files changed, 73 insertions(+), 92 deletions(-)
posted at: 17:16 | path: /cran/updated | permanent link to this entry
Title: Routines for simple graphs, network analysis.
Description: Routines for simple graphs and network analysis. igraph can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality indices and much more.
ChangeLog | 86 ++++
ChangeLog.orig |only
ChangeLog.rej |only
DESCRIPTION | 6
NAMESPACE | 11
R/CohesiveBlocks.R | 73 ++--
R/auto.R | 51 ++
R/centrality.R | 35 +
R/community.R | 9
R/conversion.R | 193 ++++++++++-
R/games.R | 4
R/layout.R | 156 ++++++++
R/plot.R | 172 +++------
R/plot.common.R | 4
R/plot.shapes.R |only
R/structural.properties.R | 34 +
R/structure.generators.R | 259 +++++++++++++-
configure | 18 -
man/arpack.Rd | 24 +
man/conversion.Rd | 12
man/degree.sequence.game.Rd | 32 +
man/fastgreedy.community.Rd | 11
man/graph.adjacency.Rd | 32 +
man/graph.adjlist.Rd |only
man/graph.constructors.Rd | 15
man/graph.data.frame.Rd |only
man/graphNEL.Rd |only
man/igraph.vertex.shapes.Rd |only
man/is.mutual.Rd |only
man/layout.Rd | 6
man/layout.drl.Rd |only
man/plot.common.Rd | 32 +
man/shortest.paths.Rd | 32 +
man/similarity.Rd | 18 -
man/walktrap.community.Rd | 4
src/DensityGrid.cpp |only
src/DensityGrid.h |only
src/Makevars |only
src/Makevars.win | 2
src/NetDataTypes.cpp | 2
src/NetDataTypes.h | 40 +-
src/NetRoutines.cpp | 8
src/adjlist.c | 14
src/arpack.c | 142 +++++++-
src/arpack.h | 3
src/attributes.h | 4
src/bliss.cc | 4
src/bliss_graph.cc | 11
src/bliss_kqueue.hh | 1
src/bliss_kstack.hh | 1
src/cattributes.c | 24 -
src/centrality.c | 14
src/clustertool.cpp | 14
src/cocitation.c | 115 +++++-
src/community.c | 3
src/components.c | 52 ++
src/drl_Node.h |only
src/drl_graph.cpp |only
src/drl_graph.h |only
src/drl_layout.cpp |only
src/drl_layout.h |only
src/drl_parse.cpp |only
src/drl_parse.h |only
src/dtrexc.c | 2
src/dtrsen.c | 2
src/error.c | 7
src/error.h | 30 +
src/fast_community.c | 25 -
src/flow.c | 125 ++++++-
src/foreign-gml-lexer.c | 58 ++-
src/foreign-graphml.c | 15
src/foreign-lgl-lexer.c | 86 +++-
src/foreign-lgl-parser.c | 35 +
src/foreign-lgl-parser.h | 2
src/foreign-ncol-lexer.c | 84 +++-
src/foreign-ncol-parser.c | 30 -
src/foreign-ncol-parser.h | 2
src/foreign-pajek-lexer.c | 58 ++-
src/foreign-pajek-parser.c | 210 ++++++-----
src/foreign-pajek-parser.h | 2
src/foreign.c | 53 ++-
src/forestfire.c | 6
src/games.c | 353 ++++++++++++++++----
src/gengraph_box_list.cpp |only
src/gengraph_box_list.h |only
src/gengraph_definitions.h |only
src/gengraph_degree_sequence.cpp |only
src/gengraph_degree_sequence.h |only
src/gengraph_graph_molloy_hash.cpp |only
src/gengraph_graph_molloy_hash.h |only
src/gengraph_graph_molloy_optimized.cpp |only
src/gengraph_graph_molloy_optimized.h |only
src/gengraph_hash.h |only
src/gengraph_header.h |only
src/gengraph_mr-connected.cpp |only
src/gengraph_powerlaw.cpp |only
src/gengraph_powerlaw.h |only
src/gengraph_qsort.h |only
src/gengraph_random.cpp |only
src/gengraph_random.h |only
src/gengraph_vertex_cover.h |only
src/heap.c | 2
src/igraph.h | 130 +++++++
src/iterators.c | 4
src/layout.c | 205 ++++++-----
src/matrix.pmt | 2
src/pottsmodel_2.cpp | 23 -
src/random.c | 12
src/random.h | 3
src/rinterface.c | 299 ++++++++++++++++-
src/spmatrix.c | 2
src/structural_properties.c | 561 +++++++++++++++++++++++++++++++-
src/structure_generators.c | 341 +++++++++++++++++++
src/topology.c | 24 +
src/type_indexededgelist.c | 4
src/types.h | 2
src/vector.h | 6
src/vector.pmt | 67 +++
src/walktrap.cpp | 1
src/walktrap_graph.cpp | 1
120 files changed, 3939 insertions(+), 718 deletions(-)
posted at: 17:16 | path: /cran/updated | permanent link to this entry
Title: Factor Analysis and Data Mining with R
Description: an R package for exploratory data analysis
DESCRIPTION | 6 +--
NAMESPACE | 2 -
R/CA.R | 2 +
R/MCA.R | 3 +
R/PCA.R | 8 ++--
R/catdes.r | 4 +-
R/condes.r |only
R/dimdesc.r | 79 +++++++++----------------------------------------
R/graph.var.R | 4 +-
R/plot.AFDM.R | 4 +-
data/tea.rda |only
man/AFDM.Rd | 6 ++-
man/CA.Rd | 2 -
man/DMFA.Rd | 2 -
man/HMFA.Rd | 3 +
man/MCA.Rd | 4 +-
man/MFA.Rd | 2 -
man/PCA.Rd | 2 -
man/catdes.Rd | 8 ++--
man/coeffRV.Rd | 2 -
man/condes.Rd |only
man/coord.ellipse.Rd | 2 -
man/dimdesc.Rd | 2 -
man/graph.var.Rd | 5 +--
man/plot.AFDM.Rd | 5 +--
man/plot.CA.Rd | 2 -
man/plot.DMFA.Rd | 2 -
man/plot.GPA.Rd | 2 -
man/plot.GPApartial.Rd | 2 -
man/plot.HMFA.Rd | 2 -
man/plot.MCA.Rd | 2 -
man/plot.MFA.Rd | 2 -
man/plot.MFApartial.Rd | 2 -
man/plot.PCA.Rd | 2 -
man/prefpls.Rd | 4 --
man/print.AFDM.Rd | 2 -
man/print.CA.Rd | 2 -
man/print.GPA.Rd | 2 -
man/print.HMFA.Rd | 2 -
man/print.MCA.Rd | 2 -
man/print.MFA.Rd | 2 -
man/print.PCA.Rd | 2 -
man/simule.Rd | 2 -
man/tea.Rd |only
man/textual.Rd | 2 -
man/write.infile.Rd | 2 -
46 files changed, 78 insertions(+), 121 deletions(-)
posted at: 17:16 | path: /cran/updated | permanent link to this entry
Title: Random Effects Latent Class Analysis
Description: Fits random effects latent class models, as well as standard latent class models.
DESCRIPTION | 6 -
R/fit.adapt.random2.randomLCA.R | 156 +++++++------------------------
R/fit.adapt.random2byclass.randomLCA.R | 165 +++++++--------------------------
R/randomLCA.R | 2
R/summary.randomLCA.R | 58 +++++++++--
data/myocardial.rda |only
data/symptoms.RData |only
inst/NEWS | 10 ++
inst/doc/.build.timestamp |only
inst/doc/randomLCA-example.Rnw | 91 ++++++++++++++++++
inst/doc/randomLCA-example.pdf |binary
man/myocardial.Rd |only
man/randomLCA.Rd | 3
man/symptoms.Rd |only
src/bernoulliprobrandom.c | 10 +-
src/bernoulliprobrandom2.c |only
16 files changed, 231 insertions(+), 270 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entry
Title: Procedures for Personality and Psychological Research
Description: A number of routines for personality, psychometrics and experimental
psychology. Functions are primarily for scale construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. For more information, see the personality-project.org/r.
DESCRIPTION | 8
NAMESPACE | 22
R/ICC.R |only
R/ICLUST.R | 11
R/ICLUST.cluster.R | 69
R/ICLUST.graph.R | 2
R/ICLUST.rgraph.R | 14
R/ICLUST.sort.R | 2
R/SD.R |only
R/VSS.R | 30
R/VSS.simulate.R | 15
R/bartlett.cortest.R |only
R/cluster.cor.R | 6
R/cluster.fit.R | 23
R/cluster.loadings.R | 13
R/cluster.plot.R | 8
R/cluster2keys.R |only
R/comorbidity.R |only
R/congeneric.sim.R | 3
R/describe.R | 8
R/fa.graph.R | 31
R/fa.parallel.R | 48
R/factor.pa.R | 38
R/jennrich.cortest.R |only
R/kappa.R |only
R/kurtosi.R | 6
R/make.keys.R |only
R/mat.cortest.R |only
R/mat.regress.R | 45
R/matrix.addition.R | 7
R/multi.hist.R | 3
R/normal.cortest.R |only
R/omega.R | 13
R/omega.graph.R | 77
R/pairs.panels.R | 38
R/phi.R | 4
R/principal.R | 41
R/read.clipboard.R | 9
R/read.clipboard.lower.R |only
R/rescale.R | 6
R/scaling.fits.R |only
R/schmid.R | 21
R/skew.R | 6
R/smc.R |only
R/structure.graph.R |only
R/test.psych.r | 37
R/thurstone.R |only
R/winsor.R | 38
data/cities.rda |only
data/epi.bfi.rda |only
data/vegetables.rda |only
inst/doc/index.html | 4
inst/doc/psych-manual.pdf |51855 +++++++++++++++++++++++++---------------------
man/00.psych-package.Rd | 55
man/ICC.Rd |only
man/ICLUST.Rd | 27
man/ICLUST.graph.Rd | 2
man/ICLUST.rgraph.Rd | 9
man/SD.Rd |only
man/VSS.Rd | 51
man/VSS.simulate.Rd | 7
man/Yule.Rd | 5
man/bartlett.cortest.Rd |only
man/bfi.Rd | 11
man/circ.tests.Rd | 2
man/cities.Rd |only
man/cluster.plot.Rd | 9
man/cluster2keys.Rd |only
man/comorbidity.Rd |only
man/congeneric.sim.Rd | 10
man/cubits.Rd | 1
man/epi.bfi.Rd |only
man/error.bars.Rd | 1
man/error.crosses.Rd | 24
man/fa.graph.Rd | 6
man/fa.parallel.Rd | 7
man/factor.congruence.Rd | 2
man/factor.pa.Rd | 4
man/heights.Rd | 4
man/kappa.Rd |only
man/make.hierarchical.Rd | 9
man/make.keys.Rd |only
man/mat.cortest.Rd |only
man/mat.regress.Rd | 18
man/matrix.addition.Rd | 6
man/omega.Rd | 11
man/omega.graph.Rd | 18
man/pairs.panels.Rd | 3
man/read.clipboard.Rd | 14
man/rescale.Rd | 10
man/scaling.fits.Rd |only
man/schmid.Rd | 5
man/score.items.Rd | 26
man/smc.Rd |only
man/thurstone.Rd |only
man/tr.Rd |only
man/vegetables.Rd |only
man/winsor.Rd | 19
98 files changed, 29062 insertions(+), 23875 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entry
Title: A package for graphical modelling in R
Description: This package defines S3-classes gmData (graphical meta data), gModel (graphical model). Several other graphical modelling packages rely on these fundamental constructs. gRbase illustrates how hierarchical log-linear models (hllm) may be implemented.
ChangeLog | 8 ++++++-
DESCRIPTION | 4 +--
R/formulae.R | 53 +++++++++++++++++++++++++++++++++++++++++++------
R/ggm.R | 22 --------------------
R/setopsR.R | 2 -
R/utility.R |only
inst/doc/gRbase.pdf |binary
man/gRbase-internal.Rd | 6 +++++
8 files changed, 63 insertions(+), 32 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entry
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and regression models
caret-3.21/caret/inst/doc/caretMisc.tex |only
caret-3.21/caret/inst/doc/caretTrain.tex |only
caret-3.21/caret/inst/doc/caretVarImp.tex |only
caret-3.25/caret/DESCRIPTION | 6 +-
caret-3.25/caret/NAMESPACE | 12 ++++
caret-3.25/caret/R/createGrid.R | 9 +--
caret-3.25/caret/R/createModel.R | 43 ++++++++++++++--
caret-3.25/caret/R/extractPrediction.R | 2
caret-3.25/caret/R/extractProb.R | 2
caret-3.25/caret/R/misc.R | 32 +++++++++---
caret-3.25/caret/R/pcaNNet.R |only
caret-3.25/caret/R/predictionFunction.R | 11 +++-
caret-3.25/caret/R/print.train.R | 4 -
caret-3.25/caret/R/probFunction.R | 6 +-
caret-3.25/caret/R/rfVarImp.R | 2
caret-3.25/caret/R/selection.R | 6 +-
caret-3.25/caret/inst/doc/caretMisc.pdf | 79 ++++++++++++++----------------
caret-3.25/caret/inst/doc/caretTrain.pdf |binary
caret-3.25/caret/inst/doc/caretVarImp.pdf |binary
caret-3.25/caret/man/pcaNNet.Rd |only
caret-3.25/caret/man/selection.Rd | 2
caret-3.25/caret/man/varImp.Rd | 9 +--
22 files changed, 148 insertions(+), 77 deletions(-)
posted at: 05:16 | path: /cran/updated | permanent link to this entry
Title: Rcmdr support for the HH package
Description: Rcmdr menu support for many of the functions in the HH package.
The focus is on menu items for functions we use in our introductory courses.
DESCRIPTION | 6 +++---
R/PredictModel.R | 43 ++++++++++++++++++++++++++-----------------
R/anovaTableII.R |only
inst/etc/menus.txt | 2 +-
man/anovaTableI.HH.Rd | 2 ++
5 files changed, 32 insertions(+), 21 deletions(-)
posted at: 05:16 | path: /cran/updated | <