New package expert with initial version 0.1-1
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New package NetIndices with initial version 1.1
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New package bark with initial version 0.1-0
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New package fts with initial version 0.7.5
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New package peperr with initial version 1.0
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New package etm with initial version 0.3-2
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New package marginalmodelplots with initial version 0.3.0
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New package TraMineR with initial version 1.0
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New package ic.infer with initial version 0.7
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New package gene2pathway with initial version 1.0
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New package bear with initial version 1.0.0
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New package RKEA with initial version 0.0-1
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New package BaM with initial version 0.5
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New package tossm with initial version 1.0
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New package Metabonomic with initial version 1.0
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New package icomp with initial version 0.1
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New package fuzzyOP with initial version 1.0
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New package CADStat with initial version 2.1-06
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New package HAPim with initial version 1.0
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New package SNPMaP with initial version 1.0.2
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New package qdg with initial version 1.0.0
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New package orloca.es with initial version 1.0
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New package lmom with initial version 1.0
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New package SNPMaP.cdm with initial version 1.0.0
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New package Network with initial version 1.1
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New package DiagnosisMed with initial version 0.0.1
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New package PredictiveRegression with initial version 0.0-1
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New package wgaim with initial version 0.1-0
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New package qlspack with initial version 1.0-1
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New package bigmemory with initial version 2.1
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New package SASPECT with initial version 0.1-1
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New package MDD with initial version 0.5
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New package repolr with initial version 1.0
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New package snowfall with initial version 1.51
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New package kml with initial version 0.9.0
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New package waveclock with initial version 1.0-0
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New package orloca with initial version 1.0
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New package compare with initial version 0.1
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New package diffractometry with initial version 0.1-00
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New package lpSolveAPI with initial version 5.5.0.12-2
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New package ecolMod with initial version 1.1
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New package SiZer with initial version 0.1-0
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New package laercio with initial version 0.9-1
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New package lpc with initial version 1.0
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New package MLDA with initial version 1.0
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New package AdMit with initial version 1-00.02
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New package PSM with initial version 0.7
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New package spssDDI with initial version 0.1
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New package LDtests with initial version 1.0
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New package betaper with initial version 1.0-0
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New package onemap with initial version 0.1-0
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New package dataframes2xls with initial version 0.4
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New package uncompress with initial version 1.0
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New package bmd with initial version 0.1
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New package bayesGARCH with initial version 1-00.01
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New package picante with initial version 0.1-2
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New package rootSolve with initial version 1.1
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New package glmnet with initial version 1.1
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New package msProstate with initial version 1.0.1
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New package deSolve with initial version 1.1
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New package bise with initial version 1.0
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New package Pomic with initial version 0.9.0
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New package msDilution with initial version 1.0.1
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New package msBreast with initial version 1.0.1
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New package SDDA with initial version 1.0-0
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New package PtProcess with initial version 3.0-0
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New package smacof with initial version 0.9-0
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New package dynamo with initial version 0.1.2
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New package FTICRMS with initial version 0.5
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New package randtoolbox with initial version 1.00
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New package fgui with initial version 0.2
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New package fbati with initial version 0.5
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New package coxphw with initial version 1.0
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New package LIStest with initial version 1.0
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New package dti with initial version 0.5-4
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New package sdtalt with initial version 0.1-0
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New package rPorta with initial version 0.1-5
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New package compoisson with initial version 0.3
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New package mpm with initial version 1.0-7
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New package orth with initial version 1.5
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New package mlogit with initial version 0.1-0
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New package MMG with initial version 1.2.1
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New package rjags with initial version 1.0.2-2
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New package copas with initial version 0.5-1
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New package PolynomF with initial version 0.9
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New package BCE with initial version 1.1
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New package tframePlus with initial version 2008.5-1
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New package RCurl with initial version 0.9-2
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New package singlecase with initial version 0.1
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New package empiricalBayes with initial version 2.0
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New package mrdrc with initial version 1.0-0
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New package nparcomp with initial version 1.0-0
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Package: expert
Type: Package
Title: Modeling of data using expert opinion
Version: 0.1-1
Date: 2008-07-16
Author: Mathieu Pigeon, Michel Jacques, Vincent Goulet
Maintainer: Mathieu Pigeon
Description:
Depends: R (>= 2.6.0), stats
License: GPL (>= 2)
Encoding: latin1
LazyLoad: yes
LazyData: yes
ZipData: yes
Packaged: Thu Jul 17 11:43:02 2008; MaTT
posted at: 05:16 | path: /cran/new | permanent link to this entry
Package: NetIndices
Version: 1.1
Title: Estimates network indices, including trophic structure of foodwebs
Author: Karline Soetaert
Maintainer: Karline Soetaert
Depends: R (>= 2.01), MASS
Description: Given a network (e.g. a food web), estimates several network indices. These include: Ascendency network indices, Direct and indirect dependencies, Effective measures, Environ network indices, General network indices, Pathway analysis, Network uncertainty indices and constraint efficiencies and the trophic level and omnivory indices of food webs.
License: GPL
LazyData: yes
Packaged: Fri Jul 18 09:39:11 2008; hornik
posted at: 05:16 | path: /cran/new | permanent link to this entryWed, 16 Jul 2008
Package: bark
Type: Package
Title: Bayesian Additive Regresssion Kernels
Version: 0.1-0
Date: 2008-07-16
Author: Zhi Ouyang
Maintainer: Zhi Ouyang
Description: Impelementation of BARK: Bayesian Additive Regression Kernels with Feature Selection, Zhi Ouyang (2008), Ph.D. thesis, chapter 3.
License: GPL version 2 or newer
URL: http://www.r-project.org, http://www.stat.duke.edu/~zo2/research.html
LazyLoad: yes
Packaged: Wed Jul 16 11:46:34 2008; zo2
posted at: 17:16 | path: /cran/new | permanent link to this entry
Package: fts
Title: R interface to tslib (a time series library in c++)
Version: 0.7.5
Maintainer: Whit Armstrong
Author: Whit Armstrong
Depends: utils, stats
Description: fast operations for time series objects
License: GPL Version 3
Packaged: Wed Jul 16 08:23:34 2008; whit
posted at: 13:16 | path: /cran/new | permanent link to this entryTue, 15 Jul 2008
Package: peperr
Type: Package
Title: Parallelised Estimation of Prediction Error
Version: 1.0
Date: 2008-06-03
Depends: snowfall
Suggests: CoxBoost, locfit, survival, penalized
Author: Christine Porzelius, Harald Binder
Maintainer: Christine Porzelius
Description: Package peperr is designed for prediction error estimation through resampling techniques, possibly accelerated by parallel execution on a compute cluster. Newly developed model fitting routines can be easily incorporated.
License: GPL (>=2)
Packaged: Tue Jul 15 21:24:12 2008; hornik
posted at: 17:16 | path: /cran/new | permanent link to this entry
Package: etm
Title: Empirical Transition Matrix
Version: 0.3-2
Author: Arthur Allignol
Description: Matrix of transition probabilities for any time-inhomogeneous multistate model with finite state space
Maintainer: Arthur Allignol
License: GPL (>=2)
Depends: lattice
date: 2008/7/15
Packaged: Tue Jul 15 19:46:19 2008; arthur
posted at: 17:16 | path: /cran/new | permanent link to this entry
Package: marginalmodelplots
Type: Package
Title: Marginal Model Plots
Version: 0.3.0
Date: 2007-07-25
Author: Andrew Redd
Maintainer: Andrew Redd
Depends: R (>= 2.0.1), locfit (>= 1.5-4), grid
Description: Marginal model plots for linear (lm) and generalized linear models (glm). Including tools for bandwidth exploration. Built on the work from the alr3 and locfit packages.
License: GPL (>= 2)
Packaged: Mon Jul 14 10:54:29 2008; aredd
posted at: 13:16 | path: /cran/new | permanent link to this entry
Package: TraMineR
Version: 1.0
Date: 2008-07-10
Title: Sequences and trajectories mining for social scientists
Author: Alexis Gabadinho
Maintainer: Alexis Gabadinho
Depends: R (>= 2.4.0), RColorBrewer
Suggests: cluster
Description: This package is intended for sequence manipulation, description and data mining in the field of social sciences. In this field, sequences are sets of states or events describing life histories, for example family formation histories. It provides tools for translating sequences from one format to another, statistical functions for describing sequences and methods for computing distances between sequences using several metrics like optimal matching and some other metrics proposed by C. Elzinga.
License: GPL (>= 2)
URL: http://mephisto.unige.ch/traminer
Packaged: Mon Jul 14 19:07:43 2008; gabuntu
posted at: 13:16 | path: /cran/new | permanent link to this entryMon, 14 Jul 2008
Package: ic.infer
Title: Inequality constrained inference in linear normal situations
Version: 0.7
Depends: R(>= 2.6.1), quadprog, mvtnorm, boot
Date: 2008-07-13
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
Description: This package provides an interface to optimization methods for estimation under linear equality and inequality constraints and implements normal likelihood ratio tests involving inequality-constrained hypotheses.
License: GPL (>=2)
Encoding: latin1
Packaged: Sun Jul 13 12:55:42 2008; Grömping
posted at: 09:16 | path: /cran/new | permanent link to this entryFri, 11 Jul 2008
Package: gene2pathway
Version: 1.0
Date: 2008-07-03
Title: Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures
Author: Holger Froehlich
Maintainer: Holger Froehlich
Depends: R (>= 2.6.0), kernlab (>= 0.9), KEGG.db (>= 2.2.0), biomaRt (>= 1.12.1), KEGGSOAP (>= 1.12.0), RBGL, AnnotationDbi
LazyLoad: Yes
Description:
License: GPL (>= 2)
biocViews: Statistics, Classification
Packaged: Wed Jul 9 11:54:44 2008; froehlih
posted at: 13:17 | path: /cran/new | permanent link to this entry
Package: bear
Version: 1.0.0
Date: 2008-07-09
Title: Bioavability and Bioequivalence data analysis with crossover design (ABE)
Author: Hsin-ya Lee
Maintainer: Hsin-ya Lee
Depends: R (>= 2.5.0), reshape, nlme, sciplot
Description: A menu-driven package for bioavability andbBioequivalence data analysis including sample size estimation, noncompartment analysis (NCA) and generalized linear model (GLM)
License: GPL version 2 or newer
URL: http://pkpd.kmu.edu.tw/bear
Packaged: Thu Jul 10 17:54:50 2008; user
posted at: 13:17 | path: /cran/new | permanent link to this entry
Package: RKEA
Version: 0.0-1
Date: 2008-06-28
Title: R/KEA interface
Author: Ingo Feinerer
Maintainer: Ingo Feinerer
Description: An R interface to KEA (Version 5.0).
Depends: rJava (>= 0.5-0), RWeka, Snowball
Imports: tm
SystemRequirements: Java (>= 5.0)
License: GPL-2
Packaged: Wed Jul 9 12:23:39 2008; hornik
posted at: 13:16 | path: /cran/new | permanent link to this entryWed, 09 Jul 2008
Package: BaM
Version: 0.5
Date: 2008-07-01
Author: Jeff Gill
Maintainer: Jeff Gill
Title: Functions and datasets for books by Jeff Gill.
Description: Books is "Bayesian Methods: A Social and Behavioral Sciences Approach, Second Edition published by CRC Press, 2007"
Depends: R (>= 1.4.1), bayesm, coda, MASS, stats, mice, survival, foreign,nnet
License: GPL
URL: jgill.wustl.edu
LazyData: yes
Packaged: Tue Jul 8 11:43:14 2008; rapkin
posted at: 05:16 | path: /cran/new | permanent link to this entryTue, 08 Jul 2008
Package: tossm
Type: Package
Title: Testing of Spatial Structure Methods
Version: 1.0
Date: 2008-07-07
Author: Karen Martien, Dave Gregovich, Mark Bravington
Maintainer: Karen Martien
Description: Provides a framework under which methods for using genetic data to detect population structure and define management units can be tested.
Depends: splancs,grid,gpclib,hierfstat,mvbutils,rmetasim
URL: http://swfsc.noaa.gov/TOSSM.aspx
LazyData: true
License: GPL version 2 or newer
Packaged: Mon Jul 7 15:58:49 2008; DPG
posted at: 09:17 | path: /cran/new | permanent link to this entryMon, 07 Jul 2008
Package: Metabonomic
Type: Package
Title: GUI for Metabonomic Analysis
Version: 1.0
Date: 2008-07-07
Author: Jose L. Izquierdo
Maintainer: Jose L. Izquierdo
Description: Graphical User Interface for the Metabonomic Analysis (Baseline, Normalization, Peak Detection,
PCA, PLS, Nearest Neigbourgt, Neural Network) developed to make easy this data analysis.
License: GPL version 2 or newer
Depends: tcltk, tcltk2, tkrplot, robustbase, mvoutlier, MASS, gpls, pls, splines, class, nnet, AMORE,
neural, caMassClass, clusterSim, hddplot, scatterplot3d, relimp
Packaged: Mon Jul 7 18:31:53 2008; Jose
posted at: 13:16 | path: /cran/new | permanent link to this entry
Package: icomp
Type: Package
Title: ICOMP criterion
Version: 0.1
Date: 2008-07-03
Author: Jake Ferguson
Maintainer: Jake Ferguson
Description: Calculates the ICOMP criterion and its variations
License: GPL (>= 2)
URL: http://taper-linux.msu.montana.edu/
Packaged: Mon Jul 7 14:45:08 2008; hornik
posted at: 09:16 | path: /cran/new | permanent link to this entry
Package: fuzzyOP
Type: Package
Title: Fuzzy numbers and the main mathematical operations
Version: 1.0
Date: 2008-06-15
Author: Aklan Semagul, Altindas Emine, Macit Rabiye, Umar Senay, Unal Hatice
Maintainer: Aklan Semagul, Altindas Emine, Macit Rabiye, Umar Senay, Unal Hatice
Description: This package contains functions which allow the depiction of fuzzy numbers.
Besides, the main arithmetic operations are applied to fuzzy numbers and the
extension principle for continuous functions can be applied and plotted.
License: GPL (>= 2)
Packaged: Mon Jul 7 14:51:40 2008; hornik
posted at: 09:16 | path: /cran/new | permanent link to this entry
Package: CADStat
Version: 2.1-06
Date: 2008-07-06
Title: Provides a GUI to several statistical methods for biological inferences
Author: Lester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and Mark Fitzgerald
Maintainer: Lester Yuan
Depends: JGR, XML, lattice, bio.infer, gdata, gmodels, car, MASS, quantreg, rpart
Description: Using JGR, provides a GUI to several statistical methods -
scatterplot, boxplot, linear regression, generalized linear regression, quantile,
regression, conditional probability calculations,
and regression trees.
License: GPL Version 2 or newer
URL: http://www.rforge.net/CADStat/
Packaged: Sun Jul 6 21:38:23 2008; Lester
posted at: 09:16 | path: /cran/new | permanent link to this entry
Package: HAPim
Type: Package
Title: HapIM
Version: 1.0
Date: 2008-07-01
Author: S.Dejean, N.Oumouhou, D.Estivals, B.Mangin
Maintainer: Brigitte Mangin
Description: The package provides a set of functions whose aim is to propose 4 methods of QTL detection and fine mapping.HAPIM LD is an interval-mapping method designed for unrelated individuals with no family information and is based on a maximum-likelihood calculation.HAPIM LDL is an interval-mapping method which uses family information of individuals and combines linkage and linkage disequilibrium.It is based on a maximum-likelihood calculation.HAPLOMAX gives an analysis of variance with a sire effect and a haplotype effect. HAPLOMAX HS gives an analysis of variance with a sire effect and a haplotype effect in half-sire design.
License: GPL
Packaged: Mon Jul 7 09:15:08 2008; sdejean
posted at: 09:16 | path: /cran/new | permanent link to this entrySat, 05 Jul 2008
Package: SNPMaP
Type: Package
Title: SNP Microarrays and Pooling in R
Version: 1.0.2
Date: 2008-06-24
Author: Oliver SP Davis, Leo C Schalkwyk
Maintainer: Oliver SP Davis
Description: Pooling DNA on SNP microarrays is a cost-effective way to carry out genome-wide association studies for heritable disorders or traits. The SNPMaP package provides formal SNPMaP objects and methods in R as a base for these analyses using Affymetrix genotyping arrays.
License: GPL (>= 3)
LazyLoad: yes
LazyData: yes
Depends: methods, SNPMaP.cdm, affxparser, R.huge, R.utils, R (>= 2.4.0)
Packaged: Tue Jun 24 16:23:34 2008; spjgosd
posted at: 17:16 | path: /cran/new | permanent link to this entry
Package: qdg
Type: Package
Title: QTL directed graphs
Version: 1.0.0
Date: 2008-06-27
Author: Elias Chaibub Neto
Maintainer: Elias Chaibub Neto
Description: Infer QTL-directed Dependency Graphs for Phenotype Networks
Depends: pcalg,sem,qtl
LazyLoad: yes
LazyData: yes
License: GPL version 2 or newer
Packaged: Fri Jun 27 10:21:49 2008; yandell
posted at: 13:18 | path: /cran/new | permanent link to this entry
Package: orloca.es
Type: Package
Depends: methods, orloca
Suggests: grDevices, graphics
Title: Spanish version of orloca package
Version: 1.0
Date: 2008-06-17
Author: Fernando Fernandez-Palacin
Maintainer: Manuel Munoz-Marquez
Description: Version espanola del paquete orloca que trata de los modelos de Localizacion en Investigacion Operativa (Operations Research LOCational Analysis). En particular, el problema de encontrar el punto que minimiza la suma ponderada de las distancias a un conjunto de puntos dados.
License: GPL (>= 2)
URL: http://knuth.uca.es/orloca
Packaged: Thu Jul 3 11:20:53 2008; mmarquez
posted at: 13:18 | path: /cran/new | permanent link to this entry
Package: lmom
Version: 1.0
Date: 2008-07-03
Title: L-moments
Author: J. R. M. Hosking
Maintainer: J. R. M. Hosking
Description: Functions related to L-moments: computation of L-moments
of distributions and data samples; parameter estimation; L-moment
ratio diagram; plot vs. quantiles of an extreme-value distribution.
License: Common Public License Version 1.0
Packaged: Thu Jul 3 11:08:28 2008; hosking
posted at: 13:18 | path: /cran/new | permanent link to this entry
Package: SNPMaP.cdm
Type: Package
Title: Annotation for SNP Microarrays and Pooling in R
Version: 1.0.0
Date: 2008-06-24
Author: Oliver SP Davis, Leo C Schalkwyk
Maintainer: Oliver SP Davis
Description: Pooling DNA on SNP microarrays is a cost-effective way to carry out genome-wide association studies for heritable disorders or traits. The SNPMaP package provides formal SNPMaP objects and methods in R as a base for these analyses using Affymetrix genotyping arrays. The SNPMaP.cdm package provides cdm objects for the SNPMaP package.
License: GPL (>= 3)
LazyLoad: yes
LazyData: yes
Depends: R (>= 2.4.0)
Enhances: SNPMaP
Packaged: Tue Jun 24 17:42:49 2008; spjgosd
posted at: 13:17 | path: /cran/new | permanent link to this entry
Package: Network
Version: 1.1
Title: Estimates network indices, including trophic structure of foodwebs
Author: Karline Soetaert
Maintainer: Karline Soetaert
Depends: R (>= 2.01), MASS
Description: Given a network (e.g. a food web), estimates several network indices. These include: Ascendency network indices, Direct and indirect dependencies, Effective measures, Environ network indices, General network indices, Pathway analysis, Network uncertainty indices and constraint efficiencies and the trophic level and omnivory indices of food webs.
License: GPL
LazyData: yes
Packaged: Sat Jul 5 17:56:37 2008; hornik
posted at: 13:16 | path: /cran/new | permanent link to this entry
Package: DiagnosisMed
Version: 0.0.1
Date: 2008-06-18
Author: Pedro Brasil
Maintainer: Pedro Brasil
Depends: R (>= 2.6.2),epitools,epicalc
Title: Diagonositic test accuracy evaluation for medical professionals
Description: DiagnosisMed is a package to analyse data from diganostic test accuracy evaluating health conditions. It is beeing built to be used by health professionals. This pacakge is - or soon will be - able to estimate sample size for common situations in diagnostic test accuracy, estimate sensitivity and especificity form categorical and continuous test results including some evaluations of indeteminate results, or compare different analysis strategies into measures commonly used by health professionals.
License: GPL version 2 or later
Packaged: Sat Jul 5 17:43:56 2008; hornik
posted at: 13:16 | path: /cran/new | permanent link to this entryThu, 26 Jun 2008
Package: PredictiveRegression
Version: 0.0-1
Date: 2008-06-18
Title: Prediction Intervals for Three Basic Statistical Models
Author: Vladimir Vovk
Maintainer: Vladimir Vovk
Description: Three prediction algorithms described in the paper "On-line predictive linear regression"
(Annals of Statistics, 2008)
License: file LICENSE
Packaged: Wed Jun 25 21:27:34 2008; vovk
posted at: 05:16 | path: /cran/new | permanent link to this entryTue, 24 Jun 2008
Package: wgaim
Type: Package
Title: Whole Genome Average Interval Mapping for QTL detection using mixed models
Version: 0.1-0
Date: 2008-03-05
Author: Julian Taylor
Maintainer: Julian Taylor
Depends: R (>= 2.0.0), qtl
SystemRequirements: asreml-R
Description: This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL's in linkage maps.
License: GPL (>= 2)
Packaged: Tue Jun 24 10:31:00 2008; tay333
posted at: 05:16 | path: /cran/new | permanent link to this entryMon, 23 Jun 2008
Package: qlspack
Version: 1.0-1
Date: 2007-07-13
Title: Quasi Least Square Package
Author: Jichun Xie
Maintainer: Jichun Xie
Depends: R (>= 2.4.1), geepack (>= 1.0-12)
Description: QLS is a two-stage computational approach for estimation of the correlation parameters within the framework of GEE. It helps solving parameters in mean, scale, and correlation structures for longitudinal data.
License: GPL (>= 2)
URL: http://www.cceb.upenn.edu/~sratclif/QLSproject.html
Packaged: Fri Jun 20 23:32:36 2008; jxie
posted at: 13:39 | path: /cran/new | permanent link to this entry
Package: bigmemory
Type: Package
Title: Manage massive matrices in R using C++, with UNIX support for shared memory
Version: 2.1
Date: 2008-06-22
Author: Michael J. Kane and John W. Emerson
Maintainer: John W. Emerson
Depends: methods, stats, utils
Suggests: biglm, nws
Description: Use C++ to create, store, access, and manipulate massive matrices. Under UNIX, it also supports use of shared memory.
License: LGPL-3
Packaged: Mon Jun 23 08:35:58 2008; jay
posted at: 13:39 | path: /cran/new | permanent link to this entry
Package: SASPECT
Version: 0.1-1
Date: 2008-06-02
Title: Significant AnalysiS of PEptide CounTs.
Author: Pei Wang
Maintainer: Pei Wang
Description: A statistical method for significant analysis of comparative proteomics based on LC-MS/MS Experiments
License: GPL version 2 or newer
Packaged: Sun Jun 22 14:45:39 2008; pwang
posted at: 13:39 | path: /cran/new | permanent link to this entry
Package: MDD
Type: Package
Title: Minimum Detectable Difference Calculations
Version: 0.5
Date: 2008-06-20
Author: Don Barkauskas
Maintainer: Don Barkauskas
Depends: partitions,tcltk
Description: Calculates minimum detectable difference for several continuous and binary endpoints. Also contains programs to compare the MDD to the clinically significant difference for most of the same tests.
License: GPL-2
Packaged: Fri Jun 20 22:03:59 2008; Don
posted at: 13:39 | path: /cran/new | permanent link to this entryFri, 20 Jun 2008
Package: repolr
Type: Package
Title: Repeated measures proportional odds logistic regression
Version: 1.0
Date: 2008-05-01
Author: Nick Parsons
Maintainer: Nick Parsons
Depends: gee
Description: Package fits regression model to repeated ordinal response variables using generalized estimating equations.
License: GPL
URL: http://www.warwick.ac.uk/go/repolr
Packaged: Thu Jun 19 15:20:22 2008; nick
posted at: 05:18 | path: /cran/new | permanent link to this entryThu, 19 Jun 2008
Package: snowfall
Type: Package
Title: snowfall
Version: 1.51
Date: 2008-06-19
Author: Jochen Knaus
Maintainer: Jochen Knaus
Description: Toplevel wrapper around snow for easier development of
parallel R programs.
All functions work in sequential mode, too, if no cluster is present.
Package is also designed as connector to the cluster management tool
sfCluster, but can also used without it.
Suggests: snow, Rmpi
Depends:
License: GPL
Packaged: Thu Jun 19 10:26:05 2008; jo
posted at: 05:18 | path: /cran/new | permanent link to this entryWed, 18 Jun 2008
Package: kml
Type: Package
Title: K-Means for Longitudinal data
Version: 0.9.0
Date: 2008-05-01
Author: Christophe M. Genolini
Maintainer: Christophe M. Genolini
Description: K-Means for Longitudinal data (kml) is a non parametric algorithm for clusterizing longitudinal data.
License: GPL (>= 2)
Lazyload: yes
Depends: methods,codetools,clv
URL: http:www.r-project.org,http://christophe.genolini.free.fr/kml
Collate: function.r partition.r longData.r imputation.r artificialLongData.r clusterization.r clusterizLongData.r
Encoding: latin1
Packaged: Tue Jun 17 20:57:01 2008; Christophe
posted at: 09:18 | path: /cran/new | permanent link to this entryMon, 16 Jun 2008
Package: waveclock
Version: 1.0-0
Date: 2008-06-16
Title: Time-frequency analysis of cycling cell luminescence data
Author: Tom Price
Maintainer: Tom Price
Depends: R (>= 2.7.0), Rwave
Description: waveclock is an R function designed to assess the period and
amplitude of cycling cell luminescence data. The function reconstructs
the modal frequencies from a continuous wavelet decomposition of the
luminescence data using the 'crazy climbers' algorithm described in
"Practical Time-Frequency Analysis: Gabor and Wavelet Transforms with
an Implementation in S", by Rene Carmona, Wen L. Hwang and Bruno
Torresani, Academic Press, 1998.
License: GPL version 2 or newer
URL: http://sgdp.iop.kcl.ac.uk/tprice/software.html
Packaged: Mon Jun 16 09:17:54 2008; spjgtsp
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: orloca
Type: Package
Depends: methods
Suggests: grDevices, graphics
Title: The package deals with Operations Research LOCational Analysis models
Version: 1.0
Date: 2008-03-21
Author: Fernando Fernandez-Palacin
Maintainer: Manuel Munoz-Marquez
Description: This version of the package deals with the min-sum or center location problems.
The min-sum location problem search for a point such that the weighted sum of the distances to the demand points are minimized.
License: GPL (>= 2)
URL: http://knuth.uca.es/R
Packaged: Mon Jun 16 12:03:07 2008; hornik
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: compare
Version: 0.1
Title: Comparing Objects for Differences
Author: Paul Murrell
Maintainer: Paul Murrell
Description: Functions for comparing vectors and data frames.
License: GPL version 2 or newer
Packaged: Mon Jun 16 13:01:46 2008; paul
posted at: 05:18 | path: /cran/new | permanent link to this entryFri, 13 Jun 2008
Package: diffractometry
Type: Package
Title: Baseline identification and peak decomposition for x-ray diffractograms
Version: 0.1-00
Date: 2008-06-12
Author: P.L. Davies, U. Gather, M. Meise, D.Mergel, T. Mildenberger. Additional Code by T. Bernholt and T. Hofmeister
Maintainer: T. Mildenberger
Description: Residual-based baseline identification and peak decomposition for x-ray diffractograms as introduced in Davies/Gather/Mergel/Meise/Mildenberger (2008).
License: GPL (>= 2)
Packaged: Fri Jun 13 10:51:00 2008; mildenberger
posted at: 13:18 | path: /cran/new | permanent link to this entry
Package: lpSolveAPI
Version: 5.5.0.12-2
Date: 2008-06-12
Title: Interface to lp_solve v. 5.5
Author: lp_solve
Maintainer: Kjell Konis
Depends: R (>= 2.7.0)
Description: The lpSolveAPI package provides an R interface to the lp_solve
library API - lp_solve is a Mixed Integer Linear Programming (MILP) solver
with support for pure linear, (mixed) integer/binary, semi-continuous
and special ordered sets (SOS) models.
License: LGPL-2
Packaged: Thu Jun 12 15:21:44 2008; konis
posted at: 05:18 | path: /cran/new | permanent link to this entryThu, 12 Jun 2008
Package: ecolMod
Version: 1.1
Date: 2008-05-29
Title: "A practical guide to ecological modelling - using R as a simulation platform"
Author: Karline Soetaert
Maintainer: Karline Soetaert
Depends: R (>= 2.01), diagram,rootSolve, deSolve,mapdata,seacarb,scatterplot3d, deldir
Description: Figures, data sets and examples from the book "A practical guide to ecological modelling - using R as a simulation platform" by Karline Soetaert and Peter MJ Herman (2008). Springer.
All figures from chapter x can be generated by "demo(chapx)", where x = 1 to 11.
The R-scripts of the model examples discussed in the book are in subdirectory "examples", ordered per chapter.
Solutions to model projects are in the same subdirectories.
License: GPL
LazyData: yes
Packaged: Tue Jun 3 14:27:59 2008; karlines
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: SiZer
Version: 0.1-0
Date: 2008-06-05
Title: SiZer: Significant Zero Crossings
Author: Derek Sonderegger
Maintainer: Derek Sonderegger
Depends: R (>= 2.4.0), splines, boot
Suggests:
Description: Calculates and plots the SiZer map for scatterplot data. A SiZer map is a way of examining when the p-th derivative of a scatterplot-smoother is significantly negative, possibly zero or significantly positive across a range of smoothing bandwidths.
License: GPL (>= 2)
URL: http://www.r-project.org, http://www.another.url
Packaged: Thu Jun 12 11:27:10 2008; hornik
posted at: 05:18 | path: /cran/new | permanent link to this entryWed, 11 Jun 2008
Package: laercio
Type: Package
Title: Functions for Means comparison.
Version: 0.9-1
Date: 2008-06-10
Author: Laercio Junio da Silva
Maintainer: Laercio Junio da Silva
Description: The package contains tests to compare means.
License: GPL (>= 2)
Packaged: Wed Jun 11 09:28:58 2008; Chefe
posted at: 13:18 | path: /cran/new | permanent link to this entry
Package: lpc
Type: Package
Title: Lassoed principal components for testing significance of features
Version: 1.0
Date: 2008-06-05
Author: Daniela M Witten and Robert Tibshirani
Maintainer: Daniela M Witten
Description: Implements the LPC method of Witten&Tibshirani(2008) for identification of significant genes in a microarray experiment.
License: GPL (>= 2)
Packaged: Mon Jun 9 17:13:57 2008; dwitten
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: MLDA
Type: Package
Title: Methylation Linear Discriminant Analysis (MLDA)
Version: 1.0
Date: 2008-06-10
Author: Wei Dai, Robert Brown, Jim Paul
Maintainer: Wei Dai
Description: MLDA is a method to identify the differential methylated loci on CpG island array using Differential Methylation Hybridisation(DMH).
License: GPL (version 2 or later)
Depends: R (>= 2.7.0)
LazyLoad: yes
Packaged: Tue Jun 10 19:32:29 2008; wdai
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: AdMit
Version: 1-00.02
Date: 2008-06-10
Title: Adaptive Mixture of Student-t distributions
Author: David Ardia, Lennart F. Hoogerheide and Herman K. van Dijk
Maintainer: David Ardia
Depends: coda, mvtnorm
Description: This package provides functions to perform the fitting of an
adaptive mixture of Student-t distributions to a target density through its kernel function.
The mixture approximation can then be used as the importance density
in importance sampling or as the candidate density in the Metropolis-Hastings algorithm to
obtain quantities of interest for the target density itself.
License: GPL version 2 or newer
URL: http://perso.unifr.ch/david.ardia/
Packaged: Tue Jun 10 16:32:58 2008; David Ardia
posted at: 05:18 | path: /cran/new | permanent link to this entryTue, 10 Jun 2008
Package: PSM
Type: Package
Title: Non-Linear Mixed-Effects modelling using Stochastic Differential Equations.
Version: 0.7
Date: 2008-06-04
Encoding: latin1
Author: Stig Mortensen
Maintainer: Søren Klim
Depends: MASS, numDeriv, odesolve
Description: This package provides functions for estimation of linear and non-linear mixed-effects models using stochastic differential equations. Moreover it provides functions for finding smoothed estimates of model states and for simulation. The package allows for any multivariate non-linear time-variant model to be specified, and it also handels multidimentional input, co-variates, missing observations and specification of dosage regimen.
License: GPL (>=2)
URL: http://www.imm.dtu.dk/psm
Packaged: Tue Jun 10 04:39:27 2008; theussl
posted at: 05:18 | path: /cran/new | permanent link to this entryMon, 09 Jun 2008
Package: spssDDI
Type: Package
Title: Read SPSS System files and produce valid DDI Version 3.0 documents
Version: 0.1
Date: 2008-05-28
Author: Guido Gay
Maintainer:
Description: Read SPSS System files and produce valid DDI Version 3.0 documents
License: GPL-2
LazyLoad: yes
Packaged: Mon Jun 9 19:44:54 2008; hornik
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: LDtests
Type: Package
Title: Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
Version: 1.0
Date: 2008-06-07
Author: Alex Lewin
Maintainer: Alex Lewin
Description: Exact tests for Linkage Disequilibrium (LD) and Hardy-Weinberg Equilibrium (HWE). - 2-sided LD tests based on different measures of LD (Kulinskaya and Lewin 2008) - 1-sided Fisher's exact test for LD - 2-sided Haldane test for HWE (Wiggington 2005) - 1-sided test for inbreeding - conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions (for both LD and HWE)
License: GPL
Packaged: Mon Jun 9 10:25:16 2008; alewin
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: betaper
Type: Package
Title: Distance decay of similarity among biological inventories in the face of taxonomic uncertainty
Version: 1.0-0
Date: 2008-06-08
Author: Luis Cayuela and Marcelino de la Cruz
Maintainer: Luis Cayuela
Depends: vegan
Description: Evaluates and quantifies distance decay of similarity among biological inventories in the face of taxonomic uncertainty
License: GPL>=2
LazyLoad: yes
Packaged: Sun Jun 8 22:10:20 2008; MCR
posted at: 05:18 | path: /cran/new | permanent link to this entrySun, 08 Jun 2008
Package: onemap
Type: Package
Title: Software for constructing genetic maps in outcrossing species
Version: 0.1-0
Date: 2008-06-06
Author: Gabriel Rodrigues Alves Margarido
Maintainer: Gabriel Rodrigues Alves Margarido
Depends: R (>= 2.5.0)
Description: Analysis of molecular marker data from non-model systems to
simultaneously estimate linkage and linkage phases (genetic map construction)
License: GPL version 2 or newer
URL: http://www.r-project.org, http://www.ciagri.usp.br/~aafgarci/OneMap/
Packaged: Fri Jun 6 09:50:03 2008; gramarga
posted at: 13:18 | path: /cran/new | permanent link to this entry
Package: dataframes2xls
Type: Package
Title: dataframes2xls writes data frames to xls files
Depends: R (>= 2.0.0)
Version: 0.4
Date: 2008-07-06
Author: Guido van Steen
Maintainer:
Description: dataframes2xls writes data frames to xls files. It supports multiple sheets and basic formatting.
License: MIT
Packaged: Sun Jun 8 10:57:12 2008; nerd
posted at: 13:18 | path: /cran/new | permanent link to this entryFri, 06 Jun 2008
Package: uncompress
Version: 1.0
Date: 2008-06-05
Title: Uncompress
Author: Nicholas Vinen
Maintainer: Nicholas Vinen
Description: This R Add-On provides the function uncompress::uncompress(raw)
for decompressing .Z files. It returns the decompressed data as a raw
(binary) string. The compressed data is passed in in the same format. It
returns NULL if the input data is invalid.
License: Unlimited
Packaged: Thu Jun 5 21:18:16 2008; hb
posted at: 05:18 | path: /cran/new | permanent link to this entryThu, 05 Jun 2008
Package: bmd
Title: Benchmark dose analysis for dose-response data
LazyLoad: yes
LazyData: yes
Version: 0.1
Author: Christian Ritz
Maintainer: Christian Ritz
Description: Benchmark dose analysis for continuous and quantal dose-response data.
License: GPL (>= 2)
Depends: R (>= 2.6.0), drc
Date: 2008-06-04
URL: http://www.r-project.org
Packaged: Wed Jun 4 22:19:54 2008; ritz
posted at: 05:18 | path: /cran/new | permanent link to this entryTue, 03 Jun 2008
Package: bayesGARCH
Version: 1-00.01
Date: 2008-06-03
Title: Bayesian Estimation of the GARCH(1,1) Model with Student's t Innovations
Author: David Ardia
Maintainer: David Ardia
Depends: mvtnorm, coda
Description: This package provides the bayesGARCH function which performs the
Bayesian estimation of the GARCH(1,1) model with Student's t innovations.
License: GPL (>=2)
URL: http://perso.unifr.ch/david.ardia
Packaged: Tue Jun 3 13:10:19 2008; David Ardia
posted at: 09:18 | path: /cran/new | permanent link to this entry
Package: picante
Type: Package
Title: Tools for integrating phylogenies and ecology
Version: 0.1-2
Date: 2008-5-30
Author: Steve Kembel
Maintainer: Steve Kembel
Depends: ape, vegan
Suggests: circular
Description: Phylocom integration, community analyses, null-models, traits and evolution in R
License: GPL-2
Packaged: Tue Jun 3 08:36:18 2008; hornik
posted at: 05:18 | path: /cran/new | permanent link to this entryMon, 02 Jun 2008
Package: rootSolve
Version: 1.1
Title: Nonlinear root finding, equilibrium and steady-state analysis of ordinary differential equations
Author: Karline Soetaert
Maintainer: Karline Soetaert
Depends: R (>= 2.01)
Description: Routines to find the root of nonlinear functions, and to perform steady-state and equilibrium analysis of ordinary differential equations (ODE).
Includes routines that: (1) generate gradient and Jacobian matrices (full and banded)
(2) find roots of non-linear equations by the Newton-Raphson method,
(3) estimate steady-state conditions of a system of (differential) equations in full, banded or sparse form, using the Newton-Raphson method.
(4) solve the steady-state conditions for uni-and multicomponent 1-D and 2-D reactive transport models (boundary value problems of ODE).
Includes fortran code.
License: GPL
LazyData: yes
Packaged: Mon Jun 2 05:03:25 2008; theussl
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: glmnet
Type: Package
Title: Lasso and elastic-net regularized generalized linear models
Version: 1.1
Date: 2008-05-26
Author: Jerome Friedman, Trevor Hastie, Rob Tibshirani
Maintainer: Trevor Hastie
Depends: Matrix
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models. The algorithm uses cyclical coordinate descent in a pathwise fashion, as described in the paper on the maintainer's website.
License: GPL-2
URL: http://www-stat.stanford.edu/~hastie/Papers/glmnet.pdf
Packaged: Sun Jun 1 18:48:44 2008; hastie
posted at: 09:18 | path: /cran/new | permanent link to this entrySun, 01 Jun 2008
Package: msProstate
Type: Package
Title: Protein Mass Spectra Dataset from a Breast Cancer Study
Version: 1.0.1
Date: 2008-06-01
Author: Lixin Gong, William Constantine, and Alex Chen
Maintainer: Lixin Gong
Depends: R (>= 2.5.0), RSQLite
DependsSplus:
Suggests: msProcess
Description: This package provides a dataset of protein mass spectra
generated from patients with prostate cancer, benign prostatic hypertrophy,
and normal controls.
License: GNU General Public License Version 2
Copyright: 2007-2008 Insightful Corporation. All rights reserved.
Packaged: Fri May 30 10:14:15 2008; lgong
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: deSolve
Version: 1.1
Title: General solvers for ordinary differential equations (ODE) and for differential algebraic equations (DAE)
Author: Karline Soetaert
Maintainer: R. Woodrow Setzer
Depends: R (>= 2.01)
Description: Functions that solve a system of first-order ordinary differential equations (ODE) and of differential algebraic equations (DAE).
The functions provide an interface to the fortran functions \code{lsoda}, \code{lsodar}, \code{lsode}, \code{lsodes}, \code{dvode} and \code{daspk}.
The package also contains routines designed for solving uni-and multicomponent 1-D and 2-D reactive transport models.
License: GPL
LazyData: yes
Packaged: Fri May 30 04:45:45 2008; theussl
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: bise
Title: Auxiliary functions for phenological data analysis
Version: 1.0
Date: 16.08.2007
Author: Daniel Doktor
Description: Provides some easy-to-use functions
for spatial analyses of (plant-) phenological data sets and satellite observations of vegetation.
Maintainer: Daniel Doktor
Depends: R (>= 1.9)
License: GPL (>=2)
Packaged: Fri May 30 16:07:54 2008; doktor
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: Pomic
Type: Package
Title: Pattern Oriented Modelling Information Criterion
Version: 0.9.0
Date: 2008-30-05
Author: Cyril Piou
Maintainer: Cyril Piou
Description: This package propose calculations of a non-parsimonious based information criterion to check the quality of simulations results of ABM/IBM or other non-linear rule-based models. The POMIC is based on the KL divergence and likelihood theory. This method is still under development and further work are needed for the incorporation of model complexity measurement in the information criterion.
Depends: stats
License: GPL-2
Packaged: Fri May 30 15:46:52 2008; cyrilpiou
posted at: 17:18 | path: /cran/new | permanent link to this entryFri, 30 May 2008
Package: msDilution
Type: Package
Title: Protein Mass Spectra Dataset from a Dilution Experiment
Version: 1.0.1
Date: Fri Apr 18 14:54:53 PDT 2008
Author: Lixin Gong, William Constantine, and Yu Alex Chen
Maintainer: Lixin Gong
Depends: R (>= 2.5.0), RSQLite
DependsSplus:
Suggests: msProcess
Description: This package provides a dataset of 280 MALDI-TOF mass spectra
generated from a dilution experiment aimed at elucidating which features in
MALDI-TOF mass spectrometry data are informative for quantifying peptide
content.
License: GNU General Public License Version 2
Copyright: 2007-2008 Insightful Corporation. All rights reserved.
URL: http://www.insightful.com/services/research/proteome/default.asp
Packaged: Thu May 29 14:43:07 2008; lgong
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: msBreast
Type: Package
Title: Protein Mass Spectra Dataset from a Breast Cancer Study
Version: 1.0.1
Date: Fri Apr 18 14:56:25 PDT 2008
Author: Lixin Gong, William Constantine, and Yu Alex Chen
Maintainer: Lixin Gong
Depends: R (>= 2.5.0), RSQLite
DependsSplus:
Suggests: msProcess
Description: This package provides a dataset of 96 protein mass spectra
generated from a pooled sample of nipple aspirate fluid (NAF)
from healthy breasts and breasts with cancer.
License: GNU General Public License Version 2
Copyright: 2007-2008 Insightful Corporation. All rights reserved.
URL: http://www.insightful.com/services/research/proteome/default.asp
Packaged: Thu May 29 14:39:36 2008; lgong
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: SDDA
Date: 2008-5-30
Title: Stepwise Diagonal Discriminant Analysis
Version: 1.0-0
Author: CSIRO Bioinformatics, Glenn Stone
Description: Stepwsie Diagonal Discriminant Analysis - a fast algorithm for building multivariate classifiers
Maintainer: David Clifford
License: file LICENSE
Packaged: Fri May 30 13:46:51 2008; cli065
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: PtProcess
Version: 3.0-0
Date: 2008-05-26
Title: Time Dependent Point Process Modelling
Author: David Harte
Maintainer: David Harte
Description: This package fits and analyses time dependent marked point process models with an emphasis on earthquake modelling. For a more detailed introduction to the package, see the topic "PtProcess". A list of recent changes can be found in the topic "Changes".
License: GPL (>=2)
URL: http://www.statsresearch.co.nz/software.html
Packaged: Mon May 26 11:38:54 2008; david
posted at: 05:18 | path: /cran/new | permanent link to this entryMon, 26 May 2008
Package: smacof
Type: Package
Title: smacof for Multidimensional Scaling.
Version: 0.9-0
Date: 2008-05-24
Author: Jan de Leeuw, Patrick Mair
Maintainer: Jan de Leeuw
Description: This package provides the following approaches of multidimensional scaling (MDS) based on stress minimization by means of majorization (smacof): Simple smacof on symmetric dissimilarity matrices, smacof for rectangular matrices (unfolding models), smacof with constraints on the configuration, three-way smacof for individual differences (including constraints for idioscal, indscal, and identity), and spherical smacof (primal and dual algorithm). Each of these approaches is implemented in a metric and nonmetric manner including primary, secondary, and tertiary approaches for tie handling.
Imports: graphics, stats
Depends: R (>= 2.7.0), polynom, rgl, scatterplot3d
License: GPL
Packaged: Sun May 25 04:46:11 2008; theussl
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: dynamo
Title: Dynamic Models
Type: Package
Version: 0.1.2
Date: 2007-12-20
Author: Christian T. Brownlees
Maintainer: Christian T. Brownlees
Depends: R (>= 2.5)
Description: Routines for estimation, simulation, regularization and prediction of univariate dynamic models including: ARMA, ARMA-GARCH, ACD, MEM.
License: GPL (>=3)
Packaged: Mon May 26 00:04:30 2008; ctb
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: FTICRMS
Type: Package
Title: Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data
Version: 0.5
Date: 2008-05-24
Author: Don Barkauskas
Maintainer: Don Barkauskas
Depends: Matrix,lattice,splines
Description: This package was developed partially with funding from the NIH Training Program in Biomolecular Technology (2-T32-GM08799).
License: GPL-2
Packaged: Sun May 25 13:04:10 2008; Don
posted at: 05:18 | path: /cran/new | permanent link to this entrySun, 25 May 2008
Package: randtoolbox
Type: Package
Title: toolbox for pseudo and quasi random number generation.
Version: 1.00
Date: 2008-5-15
Author: Christophe Dutang (for the code except the SFMT algorithm from M. Matsumoto and M. Saito), Thibault Marchal (for the pdf document)
Maintainer: Christophe Dutang
Description: The package provides (1) pseudo random generators - general linear congruential generators such as Park Miller sequence and SF-Mersenne Twister algorithm; (2) a quasi random generator - the Torus algorithm (for Van Der Corput low-discrepancy sequences, use the 'Rmetrics - fOptions' package) and (3) some additional tests such as the gap test, the serial test... (other test can be found in the 'RDieHarder' package). For true random number generation, use the 'random' package.
Depends: R (>= 2.6.0)
License: GPL (>= 2)
Encoding: latin1
Packaged: Thu May 22 18:33:48 2008; christophedutang
posted at: 17:19 | path: /cran/new | permanent link to this entry
Package: fgui
Version: 0.2
Date: 2007-10-23
Title: Function GUI
Author: Thomas Hoffmann
Maintainer: Thomas Hoffmann
Imports: tcltk
Suggests: tcltk
Description: Rapidly create a GUI interface for a function you created by automatically creating widgets for arguments of the function. Automatically parses help routines for context-sensative help to these arguments. The interface essentially a wrapper to some tcltk routines to both simplify and facilitate GUI creation. More advanced tcltk routines/GUI objects can be incorporated into the interface for greater customization for the more experienced.
License: GPL
URL: http://www.people.fas.harvard.edu/~tjhoffm/fgui.html
LazyLoad: true
Packaged: Mon May 19 11:12:59 2008; merlin
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: fbati
Version: 0.5
Date: 2007-04-08
Title: Gene by Environment Interaction Tests
Author: Thomas Hoffmann
Maintainer: Thomas Hoffmann
Depends: pbatR(>= 2.0.0), fgui
Imports: tcltk, fgui
Description: Does family-based gene by environment interaction tests, and joint gene, gene-environment interaction test.
License: GPL
URL: http://www.people.fas.harvard.edu/~tjhoffm/ibat.html
LazyLoad: true
Packaged: Wed May 21 12:12:39 2008; merlin
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: coxphw
Type: Package
Title: Weighted Cox regression
Version: 1.0
Date: 2008-05-19
Author: R by Meinhard Ploner,Fortran by Georg Heinze
Maintainer:
Depends: R (>= 2.4.0), survival
Description: Weighted estimation for Cox regression
License: GPL
Packaged: Fri May 23 11:39:16 2008; Georg
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: LIStest
Type: Package
Title: Longest Increasing Subsequence Independence Test
Version: 1.0
Date: 2008-05-15
Author: Jesus Garcia and Veronica Andrea Gonzalez Lopez
Maintainer:
Description: calculate the pvalue for the two samples L.I.S independence test (for continuous random variables).
License: GPL 2.0
Packaged: Sat May 24 03:36:27 2008; user
posted at: 17:18 | path: /cran/new | permanent link to this entryWed, 21 May 2008
Package: dti
Version: 0.5-4
Date: 2008-05-20
Title: DTI Analysis
Author: Karsten Tabelow
Maintainer: Karsten Tabelow
Depends: R (>= 2.5.0), methods, adimpro, fmri
Description: Diffusion Weighted Imaging is a Magnetic Resonance Imaging
modality, that measures diffusion of water in tissues like the human brain.
The package contains R-functions to process diffusion-weighted data in the
context of the diffusion tensor model (DTI). This includes the calculation
of anisotropy measures and, most important, the implementation of our structural
adaptive smoothing algorithm as described in K. Tabelow, J. Polzehl, V. Spokoiny,
and H.U. Voss, Diffusion Tensor Imaging: Structural Adaptive Smoothing,
Neuroimage 39(4), 1763-1773 (2008).
License: GPL (>=2)
Copyright: This package is
Copyright (C) 2005-2008 Weierstrass Institute for
Applied Analysis and Stochastics.
URL: http://www.wias-berlin.de/projects/matheon_a3
Packaged: Wed May 21 15:46:14 2008; tabelow
posted at: 13:18 | path: /cran/new | permanent link to this entryTue, 20 May 2008
Package: sdtalt
Title: Signal detection theory measures and alternatives
Version: 0.1-0
Date: 2008-05-18
Author: Daniel B. Wright
Maintainer: Daniel B. Wright
Description: Two functions, sdt and mlmsdt, for calculating statistics
from signal detection theory. sdt calculates several measures where each
individual's data form a 2x2 table. Statistics for each individual and for
the sample are calculated. mlmsdt using Bates' (2008) lme4 to run multilevel
generalized linear models for this situation. Deatails in Wright, D.B.,
Horry, R., & Skagerberg, E.M. (in press). Functions for traditional and
multilevel approaches to signal detection theory. Behavior Research Methods.
Depends: lme4, boot
License: GPL
Packaged: Tue May 20 07:52:23 2008; danw
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: rPorta
Version: 0.1-5
Date: 2008-05-19
Title: R/PORTA interface
Author: Robin Nunkesser
Maintainer: Robin Nunkesser
Depends: R (>= 2.6.0)
Imports: methods
Description: An R interface to a modified version of PORTA.
License: GPL (>= 2)
Packaged: Mon May 19 17:25:00 2008; nunkesser
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: compoisson
Type: Package
Title: Conway-Maxwell-Poisson Distribution
Version: 0.3
Date: 2008-05-07
Author: Jeffrey Dunn
Maintainer: Jeffrey Dunn
Description: Provides routines for density and moments of the
Conway-Maxwell-Poisson distribution as well as functions for fitting the
COM-Poisson model for over/under-dispersed count data.
License: BSD
Depends: stats, MASS
Packaged: Mon May 19 18:28:46 2008; jsd115
posted at: 05:18 | path: /cran/new | permanent link to this entryMon, 19 May 2008
Package: mpm
Version: 1.0-7
Date: 2008-05-09
Title: Spectral Map Analysis
Maintainer: Luc Wouters
Author: Luc Wouters
Depends: R (>= 1.5), MASS, geneplotter
Description: Exploratory graphical analysis of multivariate data,
specifically gene expression data with different projection
methods: principal component analysis, correspondence
analysis, spectral map analysis.
License: GPL (>=2)
URL: http://mpm.r-forge.r-project.org
Packaged: Thu May 15 12:13:33 2008; tobias
posted at: 05:18 | path: /cran/new | permanent link to this entryFri, 16 May 2008
Package: orth
Title: Multivariate Logistic Regressions Using Orthogonalized Residuals.
Version: 1.5
Author: Kunthel By, Bahjat F. Qaqish, and John S. Preisser
Maintainer: Kunthel By
Description: Performs multivariate logistic regressions by way of orthogonalized residuals.
As a special case, the methodology recasts alternating logistic regressions
in a way that is consistent with standard estimating equation theory.
Cluster diagnostics and observation level diagnostics such as
leverage and Cook's distance are computed based on an approximation.
Exact versions of these diagnostics are computationally demanding and
as of this version, will not be included.
Depends: methods
LazyLoad: yes
License: GPL (>= 2)
Packaged: Thu May 15 10:47:39 2008; euclid
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: mlogit
Version: 0.1-0
Date: 2008-05-15
Title: multinomial logit model
Author: Yves Croissant
Maintainer: Yves Croissant
Depends: R (>= 1.8.0), maxLik
Suggests: Ecdat, lmtest, car
Description: Estimation of the multinomial logit model with choice specific variables
License: GPL (>=2)
URL: http://www.r-project.org
Packaged: Thu May 15 13:18:24 2008; yves
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: MMG
Type: Package
Title: Mixture Model on Graphs
Version: 1.2.1
Date: 2008-05-16
Author: Josselin Noirel and Guido Sanguinetti
Maintainer: Josselin Noirel
Depends: R (>= 2.6.0)
Description: This package implements the Mixture Model on Graphs
developed in Sanguinetti et al., Bioinformatics 2008. The
graph structure is used to infer quantities that were not
measured, based on the neighbours' measurements. This approach
was developed to address problems typical of Quantitative
Proteomics but could be applicable to many other domains.
License: GPL-3
Packaged: Fri May 16 11:33:54 2008; jnoirel
posted at: 17:18 | path: /cran/new | permanent link to this entryWed, 14 May 2008
Package: rjags
Version: 1.0.2-2
Date: 2008-05-09
Title: Bayesian graphical models using MCMC
Author: Martyn Plummer
Maintainer: Martyn Plummer
Depends: coda (>= 0.13)
SystemRequirements: jags (== 1.0.2)
Description: Interface to the JAGS MCMC library
License: GPL (==2)
URL: http://mcmc-jags.sourceforge.net
Packaged: Fri May 9 10:12:20 2008; martyn
posted at: 09:18 | path: /cran/new | permanent link to this entry
Package: copas
Title: Statistical methods to model and adjust for bias in meta-analysis
Version: 0.5-1
Author: James Carpenter
Maintainer: Guido Schwarzer
Depends: meta (>= 0.8)
Date: 2008-05-13
Description: Copas selection model.
License: GPL (>= 2)
Packaged: Tue May 13 22:03:25 2008; sc
posted at: 05:18 | path: /cran/new | permanent link to this entryTue, 13 May 2008
Package: PolynomF
Type: Package
Title: Polynomials in R
Version: 0.9
Date: 2008-05-12
Author: Bill Venables
Maintainer: Bill Venables
Description: Implements univariate polynomial operations in R
License: GPL version 2
Packaged: Sun May 11 21:17:40 2008; ven037
posted at: 17:18 | path: /cran/new | permanent link to this entryThu, 08 May 2008
Package: BCE
Version: 1.1
Title: Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
Author: Karel Van den Meersche
Maintainer: Karel Van den Meersche
Depends: R (>= 2.01), quadprog
Description: Function to estimates taxonomic compositions from biomarker data, using a Bayesian approach.
License: GPL
LazyData: yes
Packaged: Thu May 8 04:31:09 2008; theussl
posted at: 09:18 | path: /cran/new | permanent link to this entry
Package: tframePlus
Title: Time Frame coding kernel extensions
Description: Extensions and additional tframe utilities.
Depends: R (>= 2.5.0), tframe
Imports: tframe
Suggests: zoo, its
Version: 2008.5-1
Date: 2008-05-02
LazyLoad: yes
License: GPL-2 | file LICENSE
Author: Paul Gilbert
Maintainer: Paul Gilbert
URL: http://www.bank-banque-canada.ca/pgilbert
Packaged: Fri May 2 10:24:00 2008; paul
posted at: 05:18 | path: /cran/new | permanent link to this entry
Package: RCurl
Version: 0.9-2
Title: HTTP request interface
Author: Duncan Temple Lang
SystemRequirements: curl (version 7.12.0 or higher) http://curl.haxx.se
Maintainer: Duncan Temple Lang
Description: The package allows one to compose HTTP requests to fetch URIs, post forms,
etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP connection and the form
of the request while providing a higher-level interface than is available just
using R socket connections. Additionally, the underlying implementation is robust
and extensive, supporting SSL/HTTPS, cookies, redirects, authentication, etc.
License: BSD
LazyLoad: true
Depends: methods
URL: http://www.omegahat.org/RCurl
Limitations:
One doesn't yet have full control over the contents of a POST form such as specifying
files, content type.
Error handling uses a single global variable at present.
Note: This will be used generally to communicate with HTTP servers and specifically
in the SOAP package, HTML forms and for accessing data on Web sites that require
more state information than simply URL access (e.g. cookies).
Check: To run R CMD check, one really needs network access. It is an HTTP client!
This can be problematic as a Web site may be down when you run
but the real tests are important.
Packaged: Thu May 8 02:28:19 2008; duncan
posted at: 05:18 | path: /cran/new | permanent link to this entryWed, 07 May 2008
Package: singlecase
Type: Package
Title: statistical tests for single case studies in neuropsychology
Version: 0.1
Date: 2008-05-07
Author: Matthieu Dubois
Maintainer: Matthieu Dubois
Description: The singlecase package implements various functions for the single-case research in neuropsychology. Currently, the functions that are implemented were all originally developed by John Crawford, Paul Garthwaite and colleagues. These functions mainly deal with the comparison of a patient's test score (or score difference) to a control or normative sample. These methods also provide a point estimate of the percentage of the population that would obtain a more extreme score (or score difference) and, for some problems, an accompanying interval estimate (i.e., confidence limits) on this percentage.
License: GPL version 2 or newer
URL: http://www.code.ucl.ac.be/MatthieuDubois/r_code.html
Packaged: Wed May 7 16:55:50 2008; hornik
posted at: 13:19 | path: /cran/new | permanent link to this entry
Bundle: empiricalBayes
Contains: HighProbability localFDR
Version: 2.0
Date: 2008-03-05
Author: David R. Bickel , Zahra Montazeri
Maintainer: David. R. Bickel
BundleDescription: EmpiricalBayes provides a simple solution to the extreme multiple testing problem by estimating local false
discovery rates. It contains two packages, localFDR and HighProbability. Given a vector of p- values, localFDR estimates local false discovery rates and HighProbability determines which p-values are low enough that their alternative hypotheses can be considered highly probable .
License: Mozilla Public License 1.1
Packaged: Wed May 7 16:51:03 2008; hornik
posted at: 13:18 | path: /cran/new | permanent link to this entryTue, 06 May 2008
Package: mrdrc
Title: Model-robust concentration-response analysis
LazyLoad: yes
LazyData: yes
Version: 1.0-0
Author: Christian Ritz
Maintainer: Christian Ritz
Description: Model-robust, semi-parametric modelling of continuous and quantal concentration/dose-response data.
License: GNU GPL (>= 2)
Depends: R (>= 2.6.0), drc, locfit, EffectiveDose
Date: 2008-05-05
URL: http://www.r-project.org
Packaged: Tue May 6 07:46:20 2008; ritz
posted at: 17:18 | path: /cran/new | permanent link to this entry
Package: nparcomp
Type: Package
Title: nparcomp-package
Version: 1.0-0
Date: 2008-05-04
Author: Frank Konietschke
Maintainer: Frank Konietschke
Depends: multcomp, mvtnorm
Description: With this package, it is possible to compute nonparametric simultaneous
confidence intervals for relative contrast effects in the unbalanced one way layout.
Moreover, it computes simultaneous p-values. The simultaneous confidence intervals can
be computed using multivariate normal distribution, multivariate t-distribution with a Satterthwaite
Approximation of the degree of freedom or using multivariate range preserving transformations with
Logit or Probit as transformation function. 2 sample comparisons can be performed with the same
methods described above. There is no assumption on the underlying distribution function, only that
the data have to be at least ordinal numbers.
License: GPL
Packaged: Tue May 6 11:45:42 2008; manager
posted at: 17:18 | path: /cran/new | permanent link to this entry