Thu, 17 Apr 2014

New package WikipediR with initial version 0.5
Package: WikipediR
Type: Package
Title: A MediaWiki API wrapper
Version: 0.5
Date: 2014-04-13
Author: Oliver Keyes
Maintainer: Oliver Keyes
Description: WikipediR is a wrapper for the MediaWiki API, aimed particularly at the Wikimedia 'production' wikis, such as Wikipedia
License: MIT + file LICENSE
Depends: httr, jsonlite, methods
BugReports: https://github.com/Ironholds/WikipediR/issues
Classification/ACM: J.1
Packaged: 2014-04-17 17:55:16 UTC; ironholds
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-18 00:38:14

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New package userfriendlyscience with initial version 0.1.1
Package: userfriendlyscience
Type: Package
Title: Userfriendlyscience: quantitative analysis made accessible
Version: 0.1.1
Date: 2014-02-25
Author: Gjalt-Jorn Peters
Maintainer: Gjalt-Jorn Peters
License: GPL (>= 2)
Description: This package contains a number of functions that serve two goals: first, make R more accessible to people migrating from SPSS by adding a number of functions that behave roughly like their SPSS equivalents; and second, make a number of slightly more advanced functions more userfriendly to relatively novice users.
URL: http://userfriendlyscience.com
Imports: lavaan, psych, GGally, pwr, plyr, grid, fBasics, e1071, ltm, MBESS, knitr, xtable, foreign
Depends: ggplot2
Packaged: 2014-04-17 16:18:32 UTC; micro_000
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-17 23:17:14

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New package ShrinkCovMat with initial version 1.0.0
Package: ShrinkCovMat
Type: Package
Title: Shrinkage Covariance Matrix Estimators
Version: 1.0.0
Date: 2014-04-17
Author: Anestis Touloumis
Maintainer: Anestis Touloumis
Description: This package provides nonparametric Stein-type shrinkage estimators of the covariance matrix that are suitable in high-dimensional settings, that is when the number of variables is larger than the sample size.
License: GPL-2 | GPL-3
Depends: R (>= 2.10)
LazyLoad: yes
Packaged: 2014-04-17 14:20:12 UTC; toulou01
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-17 23:12:07

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New package HSAUR3 with initial version 1.0-0
Package: HSAUR3
Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Date: 2014-04-17
Version: 1.0-0
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
Description: Functions, data sets, analyses and examples from the third edition of the book `A Handbook of Statistical Analyses Using R' (Torsten Hothorn and Brian S. Everitt, Chapman & Hall/CRC, 2014). The first chapter of the book, which is entitled `An Introduction to R', is completely included in this package, for all other chapters, a vignette containing all data analyses is available. In addition, Sweave source code for slides of selected chapters is included in this package (see HSAUR3/inst/slides).
URL: The publishers web page is http://www.crcpress.com/product/isbn/9781420079333
Depends: R (>= 3.0.0), tools
Suggests: boot (>= 1.3-9), lattice (>= 0.20-23), MASS (>= 7.3-29), mgcv (>= 1.7-27), rpart (>= 4.1-4), survival (>= 2.37-4), alr3 (>= 2.0.5), ape (>= 3.0-11), coin (>= 1.0-23), flexmix (>= 2.3-11), Formula (>= 1.1-1), gamair (>= 0.0.8), gamlss.data (>= 4.2.6), gee (>= 4.13-18), KernSmooth (>= 2.23-10), lme4 (>= 1.0-5), maps (>= 2.3-6), maptools (>= 0.8-27), mboost (>= 2.2-3), mclust (>= 4.2), mlbench (>= 2.1-1), mice (>= 2.18), multcomp (>= 1.3-1), mvtnorm (>= 0.9-9996), partykit (>= 0.8-0), quantreg (>= 5.05), randomForest (>= 4.6-7), rmeta (>= 2.16), sandwich (>= 2.3-0), scatterplot3d (>= 0.3-34), sp (>= 1.0-14), TH.data (>= 1.0-2), tm (>= 0.5-9.1), vcd (>= 1.3-1), wordcloud (>= 2.4)
LazyData: yes
License: GPL-2
Encoding: UTF-8
Packaged: 2014-04-17 10:31:57 UTC; hothorn
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-18 00:21:17

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New package MSQC with initial version 1.0.1
Package: MSQC
Type: Package
Title: Multivariate Statistical Quality Control
Version: 1.0.1
Date: 2014-04-17
Author: Edgar Santos-Fernandez
Maintainer: Edgar Santos-Fernandez
Depends: rgl
Description: This package is a toolkit for multivariate process monitoring. It contains the main alternatives of multivariate control chart such as: Hotelling, Chi squared, MEWMA, MCUSUM and Generelized Variance control chart. Also, it includes some tools for assessing multivariate normality like: Mardia, Royston and Henze Zirkler test and the univariate D'Agostino test. Moreover, it possess ten didactic datasets.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-04-16 23:55:48 UTC; esantosf
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-17 18:28:39

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New package ATmet with initial version 1.2
Package: ATmet
Type: Package
Title: Advanced Tools for Metrology
Version: 1.2
Date: 2014-01-06
Author: S.Demeyer, A.Allard
Maintainer: Alexandre Allard
Depends: R (>= 2.7.0), DiceDesign, lhs, metRology, msm, sensitivity
Description: This package provides functions for smart sampling and sensitivity analysis for metrology applications, including computationally expensive problems.
License: GPL-3
Packaged: 2014-04-17 09:21:13 UTC; ALLARD
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-17 19:04:39

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Wed, 16 Apr 2014

New package BEQI2 with initial version 1.0-0
Package: BEQI2
Type: Package
Title: Benthic Ecosystem Quality Index 2
Description: Benthic Ecosystem Quality Index 2. This package facilitates the analysis of benthos data. It estimates several quality indices like the total abundance of species, species richness, Shannon index, AZTI Marine Biotic Index (AMBI), and the BEQI-2 index. The package includes two additional optional features that enhance data preprocessing: (1) genus to species conversion, i.e.,taxa counts at the taxonomic genus level can optionally be converted to the species level and (2) pooling: small samples are combined to bigger samples with a standardized size to (a) meet the data requirements of the AMBI, (b) generate comparable species richness values and (c) give a higher benthos signal to noise ratio.
Version: 1.0-0
Date: 2014-04-16
Authors@R: c(person(given = "Willem", family = "van Loon", email = "willem.van.loon@rws.nl", role = c("aut", "cph")), person(given = "Dennis", family = "Walvoort", email = "dennis.Walvoort@wur.nl", role = c("aut", "cre")))
Depends: R (>= 3.0.2), methods, tcltk
Imports: knitr, markdown, RJSONIO, xtable, plyr, reshape2
Suggests: testthat
VignetteBuilder: knitr
License: GPL (>= 3)
Packaged: 2014-04-16 14:38:31 UTC; dennis
Author: Willem van Loon [aut, cph], Dennis Walvoort [aut, cre]
Maintainer: Dennis Walvoort
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-16 22:50:45

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New package RHive with initial version 2.0-0.0
Package: RHive
Type: Package
Title: R and Hive
Version: 2.0-0.0
Description: RHive is an R extension facilitating distributed computing via HIVE query. It provides an easy to use HQL like SQL and R objects and functions in HQL.
Author: NexR
Maintainer: Johan Ahn
License: Apache License (== 2.0)
Depends: R (>= 2.13.0), rJava (>= 0.9-0)
Suggests: RUnit
SystemRequirements: Hadoop core >= 0.20.3 (http://hadoop.apache.org/core/), Hive >= 0.8 (http://hive.apache.org/)
OS_type: unix
Repository: CRAN
Packaged: 2014-04-15 01:26:27 UTC; root
NeedsCompilation: no
X-CRAN-Comment: Archived 2013-08-07 as the former maintainer withdrew maintaienrship and the nominated new maintainer did never respond to requests to update the package.
Date/Publication: 2014-04-16 09:21:53

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New package bigalgebra with initial version 0.8.4
Package: bigalgebra
Version: 0.8.4
Date: 2014-04-15
Title: BLAS routines for native R matrices and big.matrix objects.
Author: Michael J. Kane, Bryan Lewis, and John W. Emerson
Maintainer: Michael J. Kane
Imports: methods
Depends: bigmemory (>= 4.0.0)
LinkingTo: bigmemory, BH
Description: This package provides arithmetic functions for R matrix and big.matrix objects.
License: LGPL-3 | Apache License 2.0
Copyright: (C) 2014 Michael J. Kane, Bryan Lewis, and John W. Emerson
URL: http://www.bigmemory.org
LazyLoad: yes
Packaged: 2012-12-26 22:17:06 UTC; blewis
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-16 09:21:50

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Tue, 15 Apr 2014

New package HiLMM with initial version 1.0
Package: HiLMM
Type: Package
Title: Estimation of heritability in high dimensional Linear Mixed Models
Version: 1.0
Date: 2014-04-10
Author: Anna Bonnet
Maintainer: Anna Bonnet
Description: HiLMM provides estimation of heritability with confidence intervals in linear mixed models.
License: GPL-2
Packaged: 2014-04-15 13:09:37 UTC; levyleduc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 18:21:12

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New package StereoMorph with initial version 1.0
Package: StereoMorph
Title: Stereo Camera Calibration and Reconstruction
Description: StereoMorph provides functions for the collection of 3D points and curves using a stereo camera setup.
Version: 1.0
Depends: grid
Suggests: rgl
Author: Aaron Olsen, Annat Haber
Maintainer: Aaron Olsen
License: GPL-2
Packaged: 2014-04-15 03:34:20 UTC; aaron
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 15:47:06

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New package MPCI with initial version 1.0.6
Package: MPCI
Type: Package
Title: Multivariate Process Capability Indices (MPCI)
Version: 1.0.6
Date: 2014-04-13
Author: Edgar Santos-Fernandez, Michele Scagliarini.
Maintainer: Edgar Santos-Fernandez
Description: MPCI package performs the followings Multivariate Process Capability Indices: Shahriari et al. (1995) Multivariate Capability Vector, Taam et al. (1993) Multivariate Capability Index (MCpm), Pan and Lee (2010) proposal (NMCpm) and the followings based on Principal Component Analysis (PCA):Wang and Chen (1998), Xekalaki and Perakis (2002) and Wang (2005). Moreover, it includes two datasets.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-04-14 23:18:37 UTC; esantosf
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 15:31:19

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New package Johnson with initial version 1.4
Package: Johnson
Type: Package
Title: Johnson Transformation
Version: 1.4
Date: 2014-04-15
Author: Edgar Santos Fernandez
Maintainer: Edgar Santos Fernandez
Description: RE.Johnson performs the Johnson Transformation to increase the normality.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-04-14 23:37:38 UTC; esantosf
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 15:55:00

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Mon, 14 Apr 2014

New package VAR.etp with initial version 0.1
Package: VAR.etp
Type: Package
Title: VAR modelling: estimation, testing, and prediction
Version: 0.1
Date: 2014-04-14
Author: Jae. H. Kim
Maintainer: Jae H. Kim
Description: Estimation, Hypothesis Testing, Prediction for Stationary Vector Autoregressive Models
License: GPL-2
Packaged: 2014-04-14 20:21:51 UTC; jkim
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 00:32:09

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New package OceanView with initial version 1.0
Package: OceanView
Version: 1.0
Title: Visualisation of Oceanographic Data and Model Output.
Author: Karline Soetaert
Maintainer: Karline Soetaert
Depends: plot3D, plot3Drgl, R (>= 2.10)
Imports: shape
Description: Functions for transforming and viewing 2-D and 3-D (oceanographic) data and model output.
License: GPL (>= 3.0)
LazyData: yes
Repository: CRAN
Repository/R-Forge/Project: plot3d
Repository/R-Forge/Revision: 80
Repository/R-Forge/DateTimeStamp: 2014-04-11 08:12:26
Date/Publication: 2014-04-14 19:18:54
Packaged: 2014-04-11 10:18:52 UTC; rforge
NeedsCompilation: yes

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New package LumiWCluster with initial version 1.0.2
Package: LumiWCluster
Version: 1.0.2
Date: 2010-09-02
Title: Weighted model based clustering
Author: Pei Fen Kuan , Xin Zhou
Maintainer: Xin Zhou
Depends: R (>= 2.10.0)
Description: The LumiWCluster package implements the proposed weighted model based clustering for Illumina Methylation BeadArray (Kuan et al., 2010). There are two parts to this package. The first part provides function to normalize the methylation data from the Illumina GoldenGate platform. We will include the normalization for Illumina Infinium platform in future. The second part provides function to identify subgroups with distinct methylation profiles in Illumina BeadArray. It works for both Infinium and GoldenGate platform, as well as any other platforms including gene expression arrays. The core of the algorithm is based on the paper by Wang and Zhu (2008), which automatically selects important CpGs/probes. LumiWCluster incorporates the detection p-values (a quality measure of probe performance reported by Illumina BeadStudio or GenomeStudio) systematically in the clustering algorithm and avoids arbitrary cutoff for excluding unreliable probes. Further details and motivation can be found in Kuan et al. (2010).
License: GPL (>= 2)
Packaged: 2014-04-13 23:11:57 UTC; peifenkuan
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-14 18:40:03

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New package DivE with initial version 1.0
Package: DivE
Type: Package
Title: Diversity Estimator
Version: 1.0
Date: 2014-04-01
Author: Daniel Laydon, Aaron Sim, Charles Bangham, Becca Asquith
Maintainer: Daniel Laydon
Depends: deSolve, FME, rgeos, sp, R (>= 2.15.3)
Description: R-package DivE contains functions for the DivE estimator (Laydon, D. et al., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014). The DivE estimator is a heuristic approach to estimate the number of classes or the number of species (species richness) in a population.
License: GPL (>= 2)
LazyData: TRUE
Packaged: 2014-04-14 12:24:21 UTC; aaronsim
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-14 19:07:04

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New package compositions with initial version 1.40-0
Package: compositions
Version: 1.40-0
Date: 2013-04-08
Title: Compositional Data Analysis
Author: K. Gerald van den Boogaart , Raimon Tolosana, Matevz Bren
Maintainer: K. Gerald van den Boogaart
Depends: R (>= 2.2.0), tensorA, robustbase, energy, bayesm
Suggests: rgl
Description: The package provides functions for the consistent analysis of compositional data (e.g. portions of substances) and positive numbers (e.g. concentrations) in the way proposed by Aitchison and Pawlowsky-Glahn.
License: GPL (>= 2)
URL: http://www.stat.boogaart.de/compositions
Packaged: 2014-04-12 09:04:49 UTC; boogaart
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-14 18:36:22

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New package rHealthDataGov with initial version 1.0.0
Package: rHealthDataGov
Type: Package
Title: Retrieve data sets from the HealthData.gov data API
Version: 1.0.0
Date: 2014-04-13
Author: Erin LeDell
Maintainer: Erin LeDell
Description: An R interface for the HealthData.gov data API. For each data resource, you can filter results (server-side) to select subsets of data.
License: GPL-2
Depends: R (>= 3.0.1), bit64, httr, jsonlite
LazyLoad: yes
LazyData: yes
Packaged: 2014-04-14 00:08:14 UTC; ledell
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-14 14:14:26

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New package mdatools with initial version 0.5.1
Package: mdatools
Title: Multivariate data analysis for chemometrics
Version: 0.5.1
Date: 2014-04-13
Author: Sergey Kucheryavskiy
Maintainer: Sergey Kucheryavskiy
Description: The package implements projection based methods for preprocessing, exploring and analysis of multivariate data used in chemometrics.
Suggests:
Depends:
License: GPL-3
Packaged: 2014-04-14 06:03:36 UTC; svkucheryavski
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-14 14:13:42

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New package ibs with initial version 1.0
Package: ibs
Type: Package
Title: Integrated B-spline
Version: 1.0
Date: 2014-04-12
Author: Feng Chen
Maintainer: Feng Chen
Description: Calculate B-spline basis functions with a given set of knots and order, or a B-spline function with a given set of knots and order and set of de Boor points (coefficients), or the integral of a B-spline function.
License: GPL (>= 2)
Packaged: 2014-04-13 22:43:15 UTC; z3243864
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-14 14:12:30

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New package binda with initial version 1.0.0
Package: binda
Version: 1.0.0
Date: 2014-04-14
Title: Multi-Class Discriminant Analysis using Binary Predictors
Author: Sebastian Gibb and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
Depends: R (>= 2.15.1), entropy (>= 1.2.0)
Suggests: MASS
Description: The "binda" package implements functions for multi-class discriminant analysis using binary predictors, for corresponding variable selection, and for dichotomizing continuous data.
License: GPL (>= 3)
URL: http://strimmerlab.org/software/binda/
Packaged: 2014-04-14 00:26:52 UTC; strimmer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-14 14:54:59

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Sun, 13 Apr 2014

New package LOGICOIL with initial version 0.99.0
Package: LOGICOIL
Type: Package
Version: 0.99.0
Date: 2014-04-12
Title: LOGICOIL: multi-state prediction of coiled-coil oligomeric state.
Author: Thomas L. Vincent , Peter J. Green and Derek N. Woolfson
Maintainer: Thomas L. Vincent
Depends: R (>= 2.12), nnet
LazyData: true
ZipData: no
License: GPL (>= 2)
Description: This package contains the functions necessary to run the LOGICOIL algorithm. LOGICOIL can be used to differentiate between antiparallel dimers, parallel dimers, trimers and higher-order coiled-coil sequence. By covering >90 percent of the known coiled-coil structures, LOGICOIL is a net improvement compared with other existing methods, which achieve a predictive coverage of around 31 percent of this population. As such, LOGICOIL is particularly useful for researchers looking to characterize novel coiled-coil sequences or studying coiled-coil containing protein assemblies. It may also be used to assist in the structural characterization of synthetic coiled-coil sequences.
Repository: CRAN
URL: http://coiledcoils.chm.bris.ac.uk/LOGICOIL
Packaged: 2014-04-13 21:36:51 UTC; ThomasVincent
NeedsCompilation: no
Date/Publication: 2014-04-14 00:04:00

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New package freqweights with initial version 0.0.1
Package: freqweights
Type: Package
Title: Working with frequency tables
Version: 0.0.1
Date: 2014-04-03
Author: Emilio Torres-Manzanera
Maintainer: Emilio Torres-Manzanera
Description: The frequency of a particular data value is the number of times it occurs. A frequency table is a table of values with their corresponding frequencies. Frequency weights are integer numbers that indicate how many cases each case represents. This package provides some functions to work with such type of collected data.
License: GPL-3
Imports: plyr, data.table, dplyr, biglm, fastcluster
Suggests: MASS, hflights, cluster, ggplot2
Packaged: 2014-04-13 00:49:45 UTC; emilio
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-14 00:05:17

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New package FisHiCal with initial version 1.0
Package: FisHiCal
Type: Package
Title: Iterative FISH-based Calibration of Hi-C Data
Version: 1.0
Date: 2014-04-09
Author: Yoli Shavit, Fiona Kathryn Hamey and Pietro Lio'
Maintainer: Yoli Shavit
Description: FisHiCal integrates Hi-C and FISH data, offering a modular and easy-to-use tool for chromosomal spatial analysis.
License: GPL
Depends: R (>= 3.0.2), igraph, RcppArmadillo (>= 0.4.100.2.1)
Suggests: rgl
LinkingTo: Rcpp (>= 0.11.1), RcppArmadillo (>= 0.4.100.2.1)
Packaged: 2014-04-13 18:55:42 UTC; ys388
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-13 23:26:01

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New package FGSG with initial version 1.0
Package: FGSG
Title: Feature grouping and selection over an undirected graph
Version: 1.0
Author: Xiaotong Shen, Yiwen Sun, Julie Langou
Maintainer: Yiwen Sun
Description: FGSG package implements algorithms for feature grouping and selection over an undirected graph.
License: GPL-2
Note: The header file blaswrap.h, f2c.h and fgsg.h are from the VisualStudio library created by Julie Langou.
Packaged: 2014-04-13 17:25:11 UTC; sunxx847
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-13 23:04:06

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New package anominate with initial version 0.3
Package: anominate
Type: Package
Title: alpha-NOMINATE Ideal Point Estimator
Version: 0.3
Date: 2014-04-11
Author: Christopher Hare , Jeffrey Lewis , Keith Poole , Howard Rosenthal , Royce Carroll , James Lo
Maintainer: Christopher Hare
Depends: wnominate, oc, pscl, MCMCpack
Description: Fits ideal point model described in Carroll, Lewis, Lo, Poole and Rosenthal, "The Structure of Utility in Models of Spatial Voting," American Journal of Political Science 57(4): 1008--1028.
License: GPL-2
URL: http://www.voteview.com/alphanominate.asp
Packaged: 2014-04-13 01:45:17 UTC; Christopher
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-13 19:57:16

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New package helsinki with initial version 0.9.12
Package: helsinki
Type: Package
Title: Helsinki open data R tools
Version: 0.9.12
Date: 2014-04-13
Author: Juuso Parkkinen, Leo Lahti, Joona Lehtomaki
Maintainer: Juuso Parkkinen
Description: Tools for accessing various open data sources in the Helsinki region in Finland. Current data sources include the Real Estate Department and the Environmental Services Authority.
License: BSD_2_clause + file LICENSE
Depends: R (>= 3.0.1), rjson, RCurl, maptools, utils
URL: http://ropengov.github.com/helsinki
LazyLoad: yes
Packaged: 2014-04-13 07:32:03 UTC; juusoparkkinen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-13 16:05:54

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Sat, 12 Apr 2014

New package hasseDiagram with initial version 0.1
Package: hasseDiagram
Type: Package
Title: Drawing Hasse diagram
Version: 0.1
Date: 2014-02-13
Author: Krzysztof Ciomek
Maintainer: Krzysztof Ciomek
Depends: Rgraphviz (>= 2.6.0), grid (>= 3.0.2)
Description: Drawing Hasse diagram - visualization of transitive reduction of a finite partially ordered set.
License: MIT + file LICENSE
Packaged: 2014-04-12 10:09:02 UTC; Krzysztof
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-12 23:27:47

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New package EntropyEstimation with initial version 0.1
Package: EntropyEstimation
Type: Package
Title: Tools for the estimation of entropy and related quantities.
Version: 0.1
Date: 2014-04-06
Author: Lijuan Cao and Michael Grabchak
Maintainer: Michael Grabchak
Description: This package contains methods for the estimation of Shannon's entropy, variants of Renyi's entropy, mutual information, and Kullback-Leibler divergence. The estimators used have a bias that decays exponentially fast.
License: GPL (>= 3)
URL: http://math2.uncc.edu/~mgrabcha/research.html
Packaged: 2014-04-12 04:06:04 UTC; fionacao
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-13 00:34:45

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Fri, 11 Apr 2014

New package rorutadis with initial version 0.1.1
Package: rorutadis
Type: Package
Title: Robust Ordinal Regression UTADIS
Version: 0.1.1
Date: 2014-04-10
Author: Krzysztof Ciomek
Maintainer: Krzysztof Ciomek
URL: https://github.com/kciomek/rorutadis/
Depends: Rglpk (>= 0.5-1), ggplot2 (>= 0.9.3.1), gridExtra (>= 0.9.1)
Description: Implementation of Robust Ordinal Regression for value-based sorting with some extensions and additional tools. It is a novel Multiple-Criteria Decision Aiding (MCDA) framework.
License: GPL-3
Suggests: testthat (>= 0.7.1)
Packaged: 2014-04-11 09:47:35 UTC; Krzysztof
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-11 22:44:27

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New package gRapfa with initial version 1.0
Package: gRapfa
Type: Package
Title: Acyclic Probabilistic Finite Automata
Version: 1.0
Date: 2014-04-10
Author: Smitha Ankinakatte and David Edwards
Maintainer: Smitha Ankinakatte
Description: gRapfa is for modelling discrete longitudinal data using acyclic probabilistic finite automata (APFA). The package contains functions for constructing APFA models from a given data using penalized likelihood methods. For graphical display of APFA models, gRapfa depends on 'igraph package'. gRapfa also contains an interface function to Beagle software that implements an efficient model selection algorithm.
License: GPL (>= 2)
Depends: R (>= 3.0.2), igraph
Packaged: 2014-04-11 12:02:26 UTC; SMAA
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-11 22:47:57

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New package CircE with initial version 1.0
Package: CircE
Version: 1.0
Date: 2014/3/4
Title: Circumplex models Estimation
Author: Michele Grassi
Maintainer: Michele Grassi
Depends: R (>= 1.6.0), stats
Description: This package contains functions for fitting circumplex structural models for correlation matrices (with negative correlation) by the method of maximum likelihood.
License: GPL (>= 2)
LazyLoad: true
Packaged: 2014-04-11 16:11:21 UTC; michelegrassi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-11 22:52:57

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New package Rcpp11 with initial version 3.1.0
Package: Rcpp11
Title: R and C++11
Version: 3.1.0
Date: 2014-04-10
Authors@R: c( person("Romain", "Francois", role = c("aut", "cre"), email = "romain@r-enthusiasts.com"), person("Kevin", "Ushey", role = "aut", email = "kevinushey@gmail.com"), person("John", "Chambers", role = "ctb", email = "jmc@r-project.org") )
Description: R and C++11
Depends: R (>= 3.1.0)
License: MIT + file LICENSE
SystemRequirements: C++11
Packaged: 2014-04-10 13:08:01 UTC; romain
Author: Romain Francois [aut, cre], Kevin Ushey [aut], John Chambers [ctb]
Maintainer: Romain Francois
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-11 10:46:36

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New package rvTDT with initial version 1.0
Package: rvTDT
Type: Package
Title: population control weighted rare-variants TDT
Version: 1.0
Date: 2014-04-07
Author: Yu Jiang, Andrew S. Allen
Maintainer: Yu Jiang
Description: Used to compute population controls weighted rare variants transmission distortion test
License: GPL-3
Depends: CompQuadForm (>= 1.4.1)
Packaged: 2014-04-10 20:16:07 UTC; yujiang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-11 07:52:45

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New package extWeibQuant with initial version 1.0
Package: extWeibQuant
Type: Package
Title: Estimate the lower extreme quantile with the censored Weibull MLE and censored Weibull Mixture
Version: 1.0
Date: 2014-04-09
Author: Yang (Seagle) Liu
Maintainer: Yang (Seagle) Liu
Description: This package implements the subjectively censored Weibull MLE and censored Weibull mixture for the lower quantile estimation. It also includes functions to evaluation the standard error of the resulting quantile estimates. Also, the methods here can be used to fit the Weibull or Weibull mixture for the Type-I or Type-II right censored data.
License: GPL (>= 2)
Packaged: 2014-04-10 21:33:42 UTC; User
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-11 07:52:38

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Thu, 10 Apr 2014

New package PSMix with initial version 1.1.1
Package: PSMix
Type: Package
Title: Population structure inference using mixture model
Version: 1.1.1
Encoding: UTF-8
Authors@R: c(person(given = "Baolin", family = "Wu", role = c("aut","cph"),email = "baolin@umn.edu"), person(given = "Nianjun", family = "Liu", role = c("aut","cph"),email = "nliu@ms.soph.uab.edu"), person(given = "Hongyu", family = "Zhao", role = c("aut","cph"),email = "hongyu.zhao@yale.edu"), person(given = "Jose", family = "Gama", role = "cre",email = "jgama@abo.fi"))
Description: population structure inference using likelihood-based approach
URL: http://bioinformatics.med.yale.edu/PSMIX
License: GPL (>= 2)
Depends: R (>= 2.10)
Author: Baolin Wu [aut, cph], Nianjun Liu [aut, cph], Hongyu Zhao [aut, cph], Jose Gama [cre]
Maintainer: Jose Gama
Repository: CRAN
Repository/R-Forge/Project: psmix
Repository/R-Forge/Revision: 3
Repository/R-Forge/DateTimeStamp: 2014-04-10 09:54:12
Date/Publication: 2014-04-10 15:16:20
Packaged: 2014-04-10 10:15:20 UTC; rforge
NeedsCompilation: yes

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New package toaster with initial version 0.2.5
Package: toaster
Type: Package
Title: analytics and visualization with Aster Database
Version: 0.2.5
Author: Gregory Kanevsky
Maintainer: Gregory Kanevsky
Description: toaster (a.k.a 'to Aster') is a set of tools to perform in-database analytics with Teradata Aster Discovery Platform. toaster embraces simple approach by dividing tasks into 2 steps: compute in Aster - visualize and analyze in R. toaster `compute` functions use distributed, highly scalable, parallel SQL and map-reduce for processing of large data sets in Aster database. Then `create` functions visualize results with boxplots, scatterplots, histograms, heatmaps, word clouds, maps, or slope graphs. Advanced options such as faceting, coloring, labeling, and others are supported with most plots.
URL: https://grigory@bitbucket.org/grigory/toaster.git
SystemRequirements: Teradata Aster 5.1 or higher, Teradata Aster Analytical Foundation 5.10 or higher (5.11 or higher is recommended)
Depends: R (>= 2.14), RODBC (>= 1.3-9)
Suggests: testthat (>= 0.2), memoise
Imports: plyr (>= 1.8), reshape2 (>= 1.2.2), ggplot2 (>= 0.9.3.1), scales, RColorBrewer (>= 1.0-5), grid, wordcloud (>= 2.4), ggmap (>= 2.3)
License: GPL-2
Collate: 'toaster.R' 'misc.R' 'utils.R' 'computeCorrelations.R' 'computeHistogram.R' 'computeHeatmap.R' 'plotting.R' 'maps.R' 'showData.R' 'computeAggregates.R' 'computeBarchart.R' 'computeSample.R' 'computePercentiles.R' 'computeLm.R'
Packaged: 2014-04-09 23:04:29 UTC; gk186006
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-10 09:18:08

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New package edmr with initial version 0.6.3
Package: edmr
Type: Package
Title: Empirical differentially methylated regions calculation
Description: Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis optimization. It captures the regional methylation modification by taking the spatial distribution of CpGs into account for the enrichment DNA methylation sequencing data so as to optimize the definition of the empirical regions. Combined with the dependent adjustment for regional p-value combination and DMR annotation.
Version: 0.6.3
Authors@R: c(person(given="Sheng", family="Li", role=c("aut","cre", "cph"), email = "shelly1436@gmail.com"), person(given="Francine", family="Garrett-Bakelman", role="ctb"), person(family="Akalin", given="Altuna", role="ctb"), person(family="Zumbo", given="Paul", role="ctb"), person(family="Melnick", given="Ari", role="ctb"), person(family="Mason", given="Chris", role=c("ctb","ths")))
Maintainer: Sheng Li
Depends: R (>= 3.0.2)
Imports: GenomicRanges, IRanges, data.table, mixtools
License: MIT + file LICENSE
URL: https://github.com/ShengLi/edmr
LazyData: true
Collate: 'ACF.R' 'edmr.R' 'eDMR.sub.R' 'get.dist.cutoff.R' 'getDMR.R' 'getPeaks.R' 'helpers.R' 'myDiff.to.mixmdl.R' 'myDiffToDMR.R' 'plotCost.R' 'plotMdl1.R' 'filter.dmr.R' 'annotation.R' 'document_data.R'
Packaged: 2014-04-07 15:24:10 UTC; shl2018
Author: Sheng Li [aut, cre, cph], Francine Garrett-Bakelman [ctb], Altuna Akalin [ctb], Paul Zumbo [ctb], Ari Melnick [ctb], Chris Mason [ctb, ths]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-10 09:18:01

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New package CatDyn with initial version 1.0-5
Package: CatDyn
Type: Package
Title: Fishery Stock Assessment by Catch Dynamic Models
LazyLoad: yes
LazyData: yes
Version: 1.0-5
Date: 2014-04-07
Author: Ruben H. Roa-Ureta
Maintainer: Ruben H. Roa-Ureta
Depends: R (>= 3.0.0)
Imports: optimx (>= 2013.8.6), BB
Description: Using high-frequency or medium-frequency catch in biomass or numbers, fishing nominal effort, and mean body mass by time step, from one or two fishing fleets, estimate stock abundance, natural mortality rate, and fishing operational parameters. It includes methods for data organization, plotting standard exploratory and analytical plots, predictions, for 57 types of catch dynamics models of increasing complexity, and two distributions for the catch data.
License: GPL (>= 2)
Packaged: 2014-04-10 05:35:28 UTC; Rubin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-10 09:17:54

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Wed, 09 Apr 2014

New package NLSdata with initial version 0.9
Package: NLSdata
Version: 0.9
Date: 2014-04-9
Title: An R package for National Longitudinal Survey Analysis
Author: Ben Ogorek
Maintainer: Ben Ogorek
Imports: reshape2
Suggests: RUnit
Description: The National Longitudinal Surveys provide a wealth of sociological data. However, the export facilities provided by the Bureau of Labor Statistics result in a crude output format that requires a considerable time commitment from the analyst. The NLSdata package is a companion utility to the NLS Investigator that facilitates reading, interpreting and reshaping NLS data for a wide variety of sociological and longitudinal analyses.
License: GPL (>= 2)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-10 00:31:31

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New package GHQp with initial version 1.0
Package: GHQp
Type: Package
Title: Gauss Hermite Quadrature with pruning.
Version: 1.0
Date: 2014-03-04
Author: Freddy Hernandez Barajas
Maintainer: Freddy Hernandez Barajas
Description: The GHQ function can be used to obtain the quadrature points and weights to approximate an integral in two or more dimensions. This function uses the pruning approach to eliminate that points that do not contribute to the approximation of the integral and increases computational cost. The advantage to conducting this elimination of points is the decrease in the number of times that the function of interest is evaluated. This advantage is crucial in mixed models in which we must address several integrations within an iterative process to obtain model parameters.
License: GPL (>= 2)
Depends: R (>= 2.10), statmod
Suggests: scatterplot3d
Packaged: 2014-04-09 14:36:24 UTC; user
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-09 16:46:24

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New package cuttlefish.model with initial version 1.0
Package: cuttlefish.model
Version: 1.0
Date: 2013-12-13
Title: An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model
Author: Michael Gras and Jean-Paul Robin
Maintainer: Michael Gras
Depends: R (>= 3.0.0)
Type: Package
Description: This package can be used to standardize abundance indices using the delta-GLM method and to model the English Channel cuttlefish stock using a two-stage biomass model
License: GPL-3
LazyLoad: yes
Packaged: 2014-04-08 22:00:32 UTC; root
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-09 08:01:57

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Tue, 08 Apr 2014

New package Ecfun with initial version 0.1-0
Package: Ecfun
Version: 0.1-0
Date: 2013-10-13
Title: Functions for Ecdat
Author: Spencer Graves
Maintainer: Spencer Graves
Depends: R (>= 3.0.1)
Suggests: car, systemfit, sem, lmtest, sandwich, gdata, RCurl, XML, tis, Ecdat, fda
Description: Functions to update datasets in Ecdat and to create, manipulate, plot and analyze those and similar datasets.
LazyData: true
License: GPL (>= 2)
URL: http://www.r-project.org
Repository: CRAN
Repository/R-Forge/Project: ecdat
Repository/R-Forge/Revision: 157
Repository/R-Forge/DateTimeStamp: 2014-04-07 04:08:00
Date/Publication: 2014-04-08 15:25:29
Packaged: 2014-04-08 04:35:12 UTC; rforge
NeedsCompilation: no

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New package sitar with initial version 1.0
Package: sitar
Type: Package
Title: SITAR growth curve analysis
Version: 1.0
Date: 2013-09-22
Author: Tim Cole
Maintainer: Tim Cole
Description: Functions for fitting and plotting SITAR (SuperImposition by Translation And Rotation) growth curve models
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Depends: R (>= 3.0.0), nlme, splines
Suggests: quantreg
Packaged: 2014-04-07 22:18:05 UTC; timcole
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-08 11:07:26

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Mon, 07 Apr 2014

New package sotkanet with initial version 0.9.03
Package: sotkanet
Type: Package
Title: Sotkanet R Tools
Version: 0.9.03
Date: 2014-04-06
Author: Leo Lahti, Einari Happonen, Juuso Parkkinen, Joona Lehtomaki
Maintainer: Leo Lahti
Description: Sotkanet API R Tools
License: BSD_2_clause + file LICENSE
URL: https://github.com/ropengov/sotkanet
BugReports: https://github.com/ropengov/sotkanet/issues
Depends: R (>= 3.0.2), ggplot2, rjson
LazyLoad: yes
VignetteBuilder: knitr
Suggests: knitr
Packaged: 2014-04-07 15:11:51 UTC; antagomir
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-07 20:15:37

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New package NPS with initial version 1.0
Package: NPS
Type: Package
Title: Convenience functions and tests for working with the Net Promoter Score (NPS)
Version: 1.0
Date: 2014-04-07
Author: Brendan Rocks
Maintainer: Brendan Rocks
Description: This package provides a few small functions to make working with survey data in an NPS context easier. Specifically, data transformation methods, some methods for examining the statistical properties of the NPS, such as its variance and standard errors, and some simple inferential testing procedures.
License: GPL (>= 2)
Packaged: 2014-04-07 12:43:18 UTC; brendan.rocks
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-07 14:56:13

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New package spectral.methods with initial version 0.7.2.124
Package: spectral.methods
Title: Singular Spectrum Analysis (SSA) tools for time series analysis
Version: 0.7.2.124
Date: 2014-01-01
Author: Jannis v. Buttlar
Maintainer: Jannis v. Buttlar
Imports: Rssa, raster, nnet, abind, RNetCDF, ncdf.tools, foreach, JBTools, parallel, DistributionUtils, RColorBrewer
Description: This package contains some implementations of Singular Spectrum Analysis (SSA) for the gapfilling (gapfillSSA() ) and spectral decomposition (filterTseriesSSA() ) of time series. It contains the code used by Buttlar et. al. (2014), Nonlinear Processes in Geophysics (gapfillNcdf). In addition, the iterative SSA gapfilling of Kondrashov and Ghil (2006) is implemented. All SSA calculations are done via the truncated and fast SSA algorithm of Korobeneykov (2010) (package Rssa).
License: GPL-2
LazyLoad: yes
Depends: R (>= 2.10.0)
Packaged: 2014-04-07 09:47:27 UTC; jbuttlar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-07 13:02:37

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New package TreatmentSelection with initial version 1.1.1
Package: TreatmentSelection
Type: Package
Title: Evaluate Treatment Selection Biomarkers
Version: 1.1.1
Date: 2014-04-04
Author: Marshall Brown and Holly Janes
Maintainer: Marshall Brown
Description: Evaluate the performance of markers used to guide treatment selection decisions. Package includes functions to plot risk curves, evaluate marker performance, assess model calibration, and compare markers.
URL: http://mdbrown.github.io/TreatmentSelection/
License: GPL-2
Imports: ggplot2, grid
Packaged: 2014-04-07 02:13:12 UTC; mdbrown
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-07 07:46:23

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New package Rsomoclu with initial version 1.3
Package: Rsomoclu
Version: 1.3
Date: 2014-03-16
Title: R package for somoclu
Depends: Rcpp
Imports:
Suggests:
Authors@R: c(person(given = "Peter", family = "Wittek", role = c("aut"), email = ""), person(given = "Shichao", family = "Gao", role = c("cre"), email = "xgdgsc@gmail.com"))
Description: Somoclu is a cluster-oriented implementation of self-organizing maps. It relies on MPI for distributing the workload, and it can be accelerated by CUDA on a GPU cluster. A sparse kernel is also included, which is useful for training maps on vector spaces generated in text mining processes.
URL: http://peterwittek.github.io/somoclu/
BugReports: https://github.com/peterwittek/somoclu/issues
License: GPL-3
Packaged: 2014-04-07 04:21:19 UTC; gsc
Author: Peter Wittek [aut], Shichao Gao [cre]
Maintainer: Shichao Gao
NeedsCompilation: yes
Repository: CRAN
SystemRequirements: GNU make
Date/Publication: 2014-04-07 07:46:29

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Sun, 06 Apr 2014

New package acss with initial version 0.1-1
Package: acss
Type: Package
Title: Algorithmic Complexity for Short Strings
Version: 0.1-1
Date: 2014-04-05
Authors@R: c( person("Nicolas", "Gauvrit", role = "aut"), person("Fernando", "Soler Toscano", role = "aut"), person("Hector", "Zenil", role = "aut"), person("Henrik", "Singmann", email = "singmann@gmail.com", role = c("aut", "cre")))
Imports: zoo
Depends: R (>= 2.15.0), acss.data
Description: Main functionality is to provide the algorithmic complexity for short strings, an approximation of the Kolmogorov Complexity of a short string using the coding theorem method (see ?acss). The database containing the complexity is provided in the data only package acss.data, this package provides functions accessing the data such as prob_random returning the probability that a given string was produced by a random process. In addition, two traditional (but problematic) measures of complexity are also provided: entropy and change complexity.
URL: http://complexitycalculator.com/methodology.html
License: GPL (>= 2)
Packaged: 2014-04-05 21:15:19 UTC; Henrik
Author: Nicolas Gauvrit [aut], Fernando Soler Toscano [aut], Hector Zenil [aut], Henrik Singmann [aut, cre]
Maintainer: Henrik Singmann
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-06 07:26:37

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Sat, 05 Apr 2014

New package isotonic.pen with initial version 1.0
Package: isotonic.pen
Type: Package
Title: Penalized Isotonic Regression in one and two dimensions
Version: 1.0
Date: 2014-04-04
Author: Mary C Meyer, Jiwen Wu, and Jean D. Opsomer
Maintainer: Mary Meyer
Description: Given a response y and a one- or two-dimensional predictor, the isotonic regression estimator is calculated with the usual orderings.
License: GPL-2 | GPL-3
Depends: graphics, grDevices, stats, utils, coneproj, Matrix
Packaged: 2014-04-04 22:31:54 UTC; marycmeyer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-05 19:08:34

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New package acss.data with initial version 1.0
Package: acss.data
Type: Package
Title: Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method)
Version: 1.0
Date: 2014-04-02
Authors@R: c( person("Fernando", "Soler Toscano", role = "aut"), person("Nicolas", "Gauvrit", role = "aut"), person("Hector", "Zenil", role = "aut"), person("Henrik", "Singmann", email = "singmann@gmail.com", role = c("aut", "cre")))
Depends: R (>= 2.10)
Description: Data only package providing the algorithmic complexity of short strings, computed using the coding theorem method. For a given set of symbols in a string, all possible or a large number of random samples of Turing machines (TM) with a given number of states (e.g., 5) and number of symbols corresponding to the number of symbols in the strings were simulated until they reached a halting state or failed to end. This package contains data on 4.5 million strings from length 1 to 12 simulated on TMs with 2, 4, 5, 6, and 9 symbols. The complexity of the string corresponds to the distribution of the halting states of the TMs.
URL: http://complexitycalculator.com/methodology.html
License: GPL (>= 2)
Packaged: 2014-04-05 09:16:08 UTC; Henrik
Author: Fernando Soler Toscano [aut], Nicolas Gauvrit [aut], Hector Zenil [aut], Henrik Singmann [aut, cre]
Maintainer: Henrik Singmann
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-05 18:54:45

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New package nonrandom with initial version 1.42
Package: nonrandom
Type: Package
Title: Stratification and matching by the propensity score
Version: 1.42
Date: 2014-04-04
Author: Susanne Stampf [cre, aut]
Authors@R: c(person("Susanne","Stampf", role=c("cre","aut"), email = "susanne.stampf@usb.ch"))
Maintainer: Susanne Stampf
Description: This package offers a comprehensive data analysis if stratification and matching by the propensity score is done. Several functions are implemented, starting from the selection of the propensity score model up to estimating propensity score based treatment or exposure effects. All functions can be applied separately as well as combined.
Depends: lme4
Suggests: colorspace
License: GPL
LazyLoad: yes
LazyData: yes
BuildVignettes: yes
NeedsCompilation: no
Packaged: 2014-04-04 08:39:52 UTC; jo
Repository: CRAN
Date/Publication: 2014-04-05 08:06:21

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Fri, 04 Apr 2014

New package palinsol with initial version 0.92
Package: palinsol
Version: 0.92
Date: 2013-01-30
Title: Insolation for palaeoclimate studies
Author: Michel Crucifix
Maintainer: Michel Crucifix
Depends: R (>= 2.10), stats, gsl
Description: R package to compute Incoming Solar Radiation (insolation) for paleoclimate studies. Features three solutions: BER78 (Berger, 1978), BER90 (Berger and Loutre, 1991) and LA04 (Laskar et al. 2004). Computes daily-mean, season-averaged and annual means for all latitudes.
License: file LICENSE
URL: https://bitbucket.org/mcrucifix/insol
Packaged: 2014-04-04 14:05:49 UTC; crucifix
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 17:34:38

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New package ncdf.tools with initial version 0.7.1.290
Package: ncdf.tools
Title: Easier ncdf file handling
Version: 0.7.1.290
Date: 2014-01-01
Author: Jannis v. Buttlar
Maintainer: Jannis v. Buttlar
Imports: RNetCDF, chron, foreach, doMC, abind, plotrix, raster, RColorBrewer, JBTools
Description: Set of tools to simplify the handling of ncdf files with the RNetCDF package. Most functions are wrappers for basic functions from RNetCDF to easily run combinations of these functions for frequently encountered tasks.
License: GPL-2
LazyLoad: yesf
Depends: R (>= 2.10.0)
Packaged: 2014-04-04 13:13:29 UTC; jbuttlar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 16:07:58

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New package ERP with initial version 1.0.1
Package: ERP
Type: Package
Title: Significance analysis of Event-Related Potentials data
Version: 1.0.1
Date: 2014-04-01
Author: David Causeur (Agrocampus, Rennes, France) and Ching-Fan Sheu (National Cheng-Kung University, Tainan, Taiwan)
Maintainer: David Causeur
Description: The functions provided in the package ERP are designed for the significance analysis of ERP data in a linear model framework. The possible procedures are either the collection of FDR or FWER controlling methods available in the generic function p.adjust, the same collection combined with a factor modeling of the time dependence among tests (see Sheu, Perthame, Lee and Causeur, 2014) and the Guthrie and Buchwald (1991) test.
License: GPL (>= 2)
Depends: fdrtool, mnormt
Packaged: 2014-04-04 13:27:47 UTC; David Causeur
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 16:07:09

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New package apmsWAPP with initial version 1.0
Package: apmsWAPP
Type: Package
Title: Pre- and Postprocessing for AP-MS data analysis based on spectral counts
Version: 1.0
Date: 2013-03-14
Author: Martina Fischer
Maintainer: Martina Fischer
Description: apmsWAPP provides a complete workflow for the analysis of AP-MS data (replicate single-bait purifications including negative controls) based on spectral counts. It comprises pre-processing, scoring and postprocessing of protein interactions. A final list of interaction candidates is reported: it provides a ranking of the candidates according to their p-values which allow estimating the number of false-positive interactions.
Imports: genefilter, Biobase, seqinr, multtest, gtools, edgeR, DESeq, aroma.light
License: LGPL-3
LazyLoad: yes
SystemRequirements: SAINT_v2.3.4
Packaged: 2014-04-04 09:51:38 UTC; fischerm
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 12:38:28

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New package neuroim with initial version 0.0.3
Package: neuroim
Imports: Matrix, yaImpute,
License: GPL (>= 2)
Maintainer: Bradley Buchsbaum
Title: neuroim: R software for reading, writing and representing brain imaging data.
Type: Package
Author: Bradley R. Buchsbaum
Description: neuroim is a collection of data structures that represent volumetric brain imaging data. The focus is on basic data handling for 3D and 4D neuroimaging data. In addition, there are function to read and write ANALYZE7.5 and NIFTI files and limited support for reading AFNI files.
Version: 0.0.3
Date: 2014-04-01
Depends: R (>= 3.0.0), stringr, hash, iterators, abind, methods
Collate: 'AFNI_IO.R' 'AllGeneric.R' 'AllClass.R' 'Axis.R' 'BinaryIO.R' 'BrainData.R' 'common.R' 'NIFTI_IO.R' 'BrainFileDescriptor.R' 'BrainMetaInfo.R' 'BrainRegion3D.R' 'BrainSlice.R' 'BrainSpace.R' 'SparseBrainVector.R' 'BrainVector.R' 'BrainVolume.R' 'Display.R' 'IndexLookupVolume.R' 'Ops.R' 'conncomp.R'
Packaged: 2014-04-04 00:40:02 UTC; bbuchsbaum
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 08:13:51

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Thu, 03 Apr 2014

New package bigsplines with initial version 1.0-0
Package: bigsplines
Type: Package
Title: Big Splines (smoothing splines for large samples)
Version: 1.0-0
Date: 2014-04-03
Author: Nathaniel E. Helwig
Maintainer: Nathaniel E. Helwig
Description: Fits smoothing spline regression models using scalable algorithms designed for large samples. Five marginal spline types are supported: cubic, different cubic, cubic periodic, cubic thin-plate, and nominal. Parametric predictors are also supported.
License: GPL (>= 2)
Packaged: 2014-04-03 05:01:17 UTC; Nate
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-04 01:27:18

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New package aRpsDCA with initial version 1.0.0
Package: aRpsDCA
Version: 1.0.0
Date: 2014-04-03
Title: Arps Decline Curve Analysis in R
Authors@R: c(person("Derrick", "Turk", role = c("aut", "cre", "cph"), email = "dwt@terminusdatascience.com"))
Description: Functions for Arps decline-curve analysis on oil and gas data. Includes exponential, hyperbolic, harmonic, and hyperbolic-to-exponential models as well as the preceding with initial curtailment. Functions included for computing rate, cumulative production, instantaneous decline, EUR, time to economic limit, and performing least-squares best fits.
License: LGPL-2.1
URL: https://github.com/derrickturk/aRpsDCA
BugReports: https://github.com/derrickturk/aRpsDCA/issues
Packaged: 2014-04-03 21:44:35 UTC; derrick
Author: Derrick Turk [aut, cre, cph]
Maintainer: Derrick Turk
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 01:20:41

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New package rivervis with initial version 0.38.2
Package: rivervis
Type: Package
Title: River Visualisation Tool
Version: 0.38.2
Date: 2014-04-03
Author: Feng Mao , Yichuan Shi , and Keith Richards
Maintainer: Feng Mao
Description: Visualisation for quantitative and qualitative riverine data
License: GPL (>= 2)
Encoding: UTF-8
Imports: graphics
Repository: CRAN
Packaged: 2014-04-03 16:53:35 UTC; Fujitsu
NeedsCompilation: no
Date/Publication: 2014-04-03 20:20:38

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New package rDVR with initial version 0.1.1
Package: rDVR
Title: The rDVR package allows you to start stop and save a video server from within R.
Version: 0.1.1
Authors@R: "John Harrison [aut, cre]"
Description: The rDVR package allows you to start stop and save a video server from within R. It does this by way of a REST interface to a JAVA service. The jar binary relies on the screen recorder included in the Monte Media Library (CC BY 3.0 licence) developed by Werner Randelshofer (http://http://www.randelshofer.ch/monte/). The REST interface was modified from https://github.com/tuenti/VideoRecorderService which has an Apache licence.
URL: http://johndharrison.github.io/rDVR/
BugReports: https://github.com/johndharrison/rDVR/issues
Imports: methods,RCurl
Depends: R (>= 3.0.0)
Suggests: knitr,RSelenium
VignetteBuilder: knitr
License: AGPL-3
LazyData: yes
Packaged: 2014-04-03 16:53:11 UTC; john
Author: "John Harrison" [aut, cre]
Maintainer: "John Harrison"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 20:20:36

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New package findpython with initial version 1.0.1
Package: findpython
Type: Package
Title: Python tools to find an acceptable python binary
Version: 1.0.1
Author: Trevor L Davis and Paul Gilbert.
Maintainer: Trevor L Davis
URL: https://github.com/trevorld/findpython
BugReports: https://github.com/trevorld/findpython/issues
Description: Package designed to find an acceptable python binary.
Suggests: testthat
License: MIT + file LICENSE
Collate: 'find_python_cmd.r'
Packaged: 2014-04-03 17:33:07 UTC; trevorld
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 20:20:34

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New package ConnMatTools with initial version 0.1.4
Package: ConnMatTools
Type: Package
Title: Tools for working with connectivity matrices
Version: 0.1.4
Date: 2013-07-09
Author: Marco Andrello
Maintainer: David M. Kaplan
Description: ConnMatTools collects several different methods for analyzing and working with connectivity matrices in R. Though primarily oriented towards marine larval dispersal, many of the methods are general and useful for terrestrial systems as well.
URL: https://github.com/dmkaplan2000/ConnMatTools.git
Suggests: igraph
Collate: 'ConnMatTools.R' 'eigs.R' 'Jacobi_EPT_reserve_selection.R' 'datasets.R' 'dpr_model.R' 'retentionStats.R' 'jacobi_etal_2012.R'
License: GPL (>= 2)
Packaged: 2014-04-03 12:29:41 UTC; dmk
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 18:30:23

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New package nlreg with initial version 1.2-2
Package: nlreg
Version: 1.2-2
Date: 2014-03-31
Title: Higher Order Inference for Nonlinear Heteroscedastic Models
Author: S original by Alessandra R. Brazzale and Ruggero Bellio . R port by Alessandra R. Brazzale , following earlier work by Douglas Bates.
Maintainer: Alessandra R. Brazzale
URL: http://www.r-project.org, http://statwww.epfl.ch/AA/
Description: Likelihood inference based on higher order approximations for nonlinear models with possibly non constant variance
Depends: R (>= 3.0.0), statmod, survival
Suggests: boot, cond, csampling, marg
License: GPL (>= 2) | file LICENCE
LazyLoad: yes
LazyData: yes
Packaged: 2014-04-03 08:32:56 UTC; brazzale
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 14:00:52

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New package marg with initial version 1.2-2
Package: marg
Version: 1.2-2
Date: 2014-03-31
Title: Approximate marginal inference for regression-scale models
Author: S original by Alessandra R. Brazzale . R port by Alessandra R. Brazzale , following earlier work by Douglas Bates.
Maintainer: Alessandra R. Brazzale
Depends: R (>= 3.0.0), statmod, survival
Suggests: boot, cond, csampling, nlreg
Description: Likelihood inference based on higher order approximations for linear nonnormal regression models
License: GPL (>= 2) | file LICENCE
URL: http://www.r-project.org, http://statwww.epfl.ch/AA/
LazyLoad: yes
LazyData: yes
Packaged: 2014-04-03 08:30:00 UTC; brazzale
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 14:00:49

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New package JBTools with initial version 0.7.2.6
Package: JBTools
Title: JBs tools and helper functions.
Version: 0.7.2.6
Date: 2014-01-01
Author: Jannis v. Buttlar
Maintainer: Jannis v. Buttlar
Description: Collection of several tools and helper functions used across the other packages of J. Buttlar (ncdf.tools and spectral.methods).
Imports: foreach, parallel, gplots, colorspace, plotrix
Suggests: doMC
License: GPL-2
LazyLoad: yes
Depends: R (>= 2.14.0)
Packaged: 2014-04-03 09:53:01 UTC; jbuttlar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 14:00:41

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New package csampling with initial version 1.2-2
Package: csampling
Version: 1.2-2
Date: 2014-03-31
Title: Functions for Conditional Simulation in Regression-Scale Models
Author: S original by Alessandra R. Brazzale . R port by Alessandra R. Brazzale .
Maintainer: Alessandra R. Brazzale
Depends: R (>= 3.0.0), marg, statmod, survival
Description: Monte Carlo conditional inference for the parameters of a linear nonnormal regression model
License: GPL (>= 2) | file LICENCE
URL: http://www.r-project.org, http://statwww.epfl.ch/AA/
LazyLoad: yes
LazyData: yes
Packaged: 2014-04-03 08:28:05 UTC; brazzale
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 14:00:47

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New package cond with initial version 1.2-2
Package: cond
Version: 1.2-2
Date: 2014-03-31
Title: Approximate conditional inference for logistic and loglinear models
Author: S original by Alessandra R. Brazzale . R port by Alessandra R. Brazzale , following earlier work by Douglas Bates.
Maintainer: Alessandra R. Brazzale
Depends: R (>= 3.0.0), statmod, survival
Suggests: boot, csampling, marg, nlreg
Description: Higher order likelihood-based inference for logistic and loglinear models
License: GPL (>= 2) | file LICENCE
URL: http://www.r-project.org, http://statwww.epfl.ch/AA/
LazyLoad: yes
LazyData: yes
Packaged: 2014-04-03 08:26:33 UTC; brazzale
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 14:00:45

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New package Methplot with initial version 1.0
Package: Methplot
Type: Package
Title: Visualize the methylation patterns
Version: 1.0
Date: 2014-03-10
Author: Xin Yang
Maintainer: Xin Yang
Imports: ggplot2, grid, reshape
Description: It plots the output from Methpup (https://github.com/XinYang6699/Methpup)
License: GPL (>= 2)
LazyData: FALSE
Packaged: 2014-04-02 15:21:30 UTC; xin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 12:04:00

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New package survivalMPL with initial version 0.1.0
Package: survivalMPL
Title: Penalised Maximum Likelihood for Survival Analysis Models
Version: 0.1.0
Date: 2014-04-03
Author: Dominique-Laurent Couturier, Jun Ma, Stephane Heritier.
Maintainer: Dominique-Laurent Couturier
Description: Estimate the regression coefficients and the baseline hazard of proportional hazard Cox models using maximum penalised likelihood. A 'non-parametric' smooth estimate of the baseline hazard function is provided.
Depends: survival
NeedsCompilation: yes
License: LGPL (>= 2)
Packaged: 2014-04-03 03:45:10 UTC; research
Repository: CRAN
Date/Publication: 2014-04-03 06:01:58

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New package RankResponse with initial version 3.0.3
Package: RankResponse
Type: Package
Title: Ranking Responses in a Single Response Question or a Multiple Response Question
Version: 3.0.3
Date: 2014-03-18
Author: Hsiuying Wang, Yu-Jun Lin
Maintainer: Hsiuying Wang
Description: Methods for ranking responses of a single response question or a multiple response question
License: GPL-2
Packaged: 2014-04-02 16:45:17 UTC; Much
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 05:57:23

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Wed, 02 Apr 2014

New package LSAfun with initial version 0.1
Package: LSAfun
Type: Package
Title: Applied Latent Semantic Analysis (LSA) functions
Description: This package provides functions that allow for convenient working with Latent Semantic Analysis. For actually building an LSA space, use the package 'lsa'.
Version: 0.1
Date: 2014-02-18
Authors@R: c(person("Fritz Guenther", role = c("aut","cre"), email ="fritz.guenther@uni-tuebingen.de"))
Depends: R (>= 2.15.3), lsa, rgl
License: GPL (>= 2)
LazyData: true
Packaged: 2014-04-02 22:57:33 UTC; zxmje28
Author: Fritz Guenther [aut, cre]
Maintainer: Fritz Guenther
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 01:02:34

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New package fifer with initial version 1.0
Package: fifer
Title: A collection of miscellaneous functions.
Description: A collection of functions that assist in data manipulation analysis and plotting.
Version: 1.0
Author: Dustin Fife
Maintainer: Dustin Fife
License: GPL-2
Depends: xtable, MASS
Collate: 'polarCoord.R' 'stratified.R' 'univariate.tests.R' 'string.to.color.R' 'spearman.plot.R' 'r.crit.R' 'boxcoxR.R' 'missing.vals.R' 'make.formula.R' 'scaleB.R' 'par1.R' 'make.null.R' 'demographics.R' 'chisqPostHoc.R' 'cor2cov.R' 'random.correlation.R' 'scale.it.R' 'densityPlotR.R' 'excelMatch.R' 'prism.plots.R' 'hash.R' 'printx.R' 'roxtemp.R' 'intersperse.R' 'subsetString.R' 'auto.layout.R' 'contents.R' 'mvrnorm.R' 'kruskalmc.R'
Packaged: 2014-04-02 16:19:55 UTC; fifed
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-02 19:17:23

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New package fat2Lpoly with initial version 1.0.2
Package: fat2Lpoly
Type: Package
Title: Two-locus Family-based Association Test with Polytomic Outcome
Version: 1.0.2
Date: 2014-04-02
Author: Alexandre BUREAU and Jordie Croteau
Maintainer: Alexandre BUREAU
Depends: R (>= 2.10), kinship2, multgee
Description: Performs family-based association tests with a polytomous outcome under 2-locus and 1-locus models defined by some design matrix.
License: GPL
LazyLoad: yes
URL: http://www.crulrg.ulaval.ca/pages_perso_chercheurs/bureau_a/
Packaged: 2014-04-02 18:25:36 UTC; alexandrebureau
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-02 20:46:07

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New package ssym with initial version 1.0
Package: ssym
Type: Package
Title: Fitting Semiparametric Symmetric Regression Models
Version: 1.0
Date: 2014-03-30
Author: Luis Hernando Vanegas and Gilberto A. Paula
Maintainer: Luis Hernando Vanegas
Description: This package allows to fit a semiparametric regression model suitable for data set analysis in which the conditional distribution of the response is symmetric and continuous.
License: GPL-2 | GPL-3
Depends: GIGrvg, numDeriv, gsl, normalp
Suggests: NISTnls
Packaged: 2014-04-02 12:15:11 UTC; Usuario
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-02 16:20:48

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New package lsa with initial version 0.73
Package: lsa
Title: Latent Semantic Analysis
Version: 0.73
Date: 2014-03-30
Author: Fridolin Wild
Description: The basic idea of latent semantic analysis (LSA) is, that text do have a higher order (=latent semantic) structure which, however, is obscured by word usage (e.g. through the use of synonyms or polysemy). By using conceptual indices that are derived statistically via a truncated singular value decomposition (a two-mode factor analysis) over a given document-term matrix, this variability problem can be overcome.
Depends: SnowballC
Suggests: tm
Maintainer: Fridolin Wild
License: GPL (>= 2)
Encoding: UTF-8
LazyData: yes
BuildResaveData: no
Packaged: 2014-04-02 12:17:36 UTC; hornik
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-02 14:43:00

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New package sybilccFBA with initial version 1.0.0
Package: sybilccFBA
Type: Package
Title: Cost Constrained FLux Balance Analysis: MetabOlic Modeling with ENzyme kineTics (MOMENT)
Version: 1.0.0
Date: 2013-10-23
Authors@R: c(person("Abdelmoneim", "Amer Desouki", role = c("aut","cre"), email = "abdelmoneim.amer@uni-duesseldorf.de"))
Depends: R (>= 2.10.0), sybil, Matrix
Suggests: cplexAPI (>= 1.2.6), glpkAPI (>= 1.2.1)
Description: implement cost constrained flux balance analysis as described in Adadi, R., Volkmer, B., Milo, R., Heinemann, M., & Shlomi, T. (2012). Prediction of Microbial Growth Rate versus Biomass Yield by a Metabolic Network with Kinetic Parameters, 8(7). doi:10.1371/journal.pcbi.1002575. Flux balance analysis is a technique to find fluxes in metabolic models at steady state. It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010)
LazyLoad: yes
License: GPL-3
Packaged: 2014-04-02 09:44:48 UTC; Abdelmonem
Author: Abdelmoneim Amer Desouki [aut, cre]
Maintainer: Abdelmoneim Amer Desouki
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-02 11:55:51

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New package sybilcycleFreeFlux with initial version 1.0.0
Package: sybilcycleFreeFlux
Type: Package
Title: cycle-Free Flux balance analysis: Efficient removal of thermodynamically infeasible cycles from metabolic flux distributions
Version: 1.0.0
Date: 2013-10-23
Authors@R: c(person("Abdelmoneim", "Amer Desouki", role = c("aut","cre"), email = "abdelmoneim.amer@uni-duesseldorf.de"))
Depends: R (>= 2.10.0), sybil, Matrix, MASS
Suggests: cplexAPI (>= 1.2.6), glpkAPI (>= 1.2.1)
Description: implement cycle-Free flux balance analysis, flux variability, and Random Sampling of solution space. Flux balance analysis is a technique to find fluxes in metabolic models at steady state. It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010).
LazyLoad: yes
License: GPL-3
Packaged: 2014-03-31 08:57:16 UTC; Abdelmonem
Author: Abdelmoneim Amer Desouki [aut, cre]
Maintainer: Abdelmoneim Amer Desouki
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-02 09:08:26

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New package spatialTailDep with initial version 1.0
Package: spatialTailDep
Title: Estimation of spatial tail dependence models
Description: Provides functions implementing the pairwise M-estimator for parametric models for stable tail dependence functions described in "An M-estimator of spatial tail dependence" (Einmahl, J.H.J., Kiriliouk, A., Krajina, A. and Segers, J., 2014). See http://arxiv.org/abs/1403.1975.
Version: 1.0
Author: Anna Kiriliouk, Johan Segers
Maintainer: Anna Kiriliouk
Depends: R (>= 3.0.1), cubature, mvtnorm, SpatialExtremes
License: GPL-3
Collate: 'tailIntEmp.r' 'gridUtilities.r' 'EstimationSmith.r' 'EstimationBR.r' 'Estimation.R' 'spatialTailDep-package.r'
Packaged: 2014-04-01 10:45:50 UTC; Anna
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-02 09:08:25

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New package Rchoice with initial version 0.1
Package: Rchoice
Title: Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters
Version: 0.1
Author: Mauricio Sarrias
Maintainer: Mauricio Sarrias
Description: Estimate binary, ordered and count models with random parameters.
Depends: R (>= 2.10), maxLik, Formula
Imports: sandwich, ggplot2, plotrix, car, lmtest
License: GPL (>= 2)
LazyData: no
Packaged: 2014-04-01 17:15:50 UTC; mauriciosarrias
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-02 09:08:22

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New package birdring with initial version 1.0
Package: birdring
Type: Package
Title: Methods to analyse ring re-encounter data
Version: 1.0
Date: 2011-10-19
Author: Fraenzi Korner-Nievergelt, Rob Robinson
Maintainer: Fraenzi Korner-Nievergelt
Depends: R (>= 2.10.1), stats
Imports: geosphere, ks, lazyData, raster, reshape, rgdal, rgeos, rworldmap, rworldxtra, sp
Description: The package contains methods and functions to analyse re-encounter data of birds marked by metal rings.
License: GPL-2
LazyLoad: yes
LazyData: TRUE
Packaged: 2014-04-01 20:46:22 UTC; Fraenzi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-02 07:50:45

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Tue, 01 Apr 2014

New package tosls with initial version 1.0
Package: tosls
Type: Package
Title: Instrumental Variables Two Stage Least Squares estimation
Version: 1.0
Date: 2014-03-31
Author: Zaghdoudi Taha
Maintainer: Zaghdoudi Taha
Description: Fit an Instrumental Variables Two Stage Least Squares model
Imports: Formula
License: Artistic-2.0
Packaged: 2014-04-01 11:49:42 UTC; Taha
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-01 14:06:09

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New package PBD with initial version 0.8
Package: PBD
Type: Package
Title: Protracted birth-death model of diversification
Version: 0.8
Date: 2014-4-1
Depends: R (>= 3.0), deSolve, ade4, ape, DDD
Author: Rampal S. Etienne
Maintainer: Rampal S. Etienne
Description: Maximum likelihood analysis of the protracted speciation model
License: GPL-2
Packaged: 2014-04-01 10:15:58 UTC; p223208
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-01 14:03:28

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New package BootPR with initial version 0.59
Package: BootPR
Type: Package
Title: Bootstrap Prediction Intervals and Bias-Corrected Forecasting
Version: 0.59
Date: 2014-04-01
Author: Jae. H. Kim
Maintainer: Jae H. Kim
Description: Bias-Corrected Forecasting and Bootstrap Prediction Intervals for Autoregressive Time Series
License: GPL-2
Packaged: 2014-04-01 11:47:08 UTC; jkim
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-01 15:02:42

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New package plusser with initial version 0.3-5
Package: plusser
Date: 2014-02-28
Version: 0.3-5
Title: A Google+ Interface for R
Description: plusser provides an API interface to Google+ so that posts, profiles and pages can be automatically retrieved
URL: http://kdss.at
Authors@R: person("Christoph", "Waldhauser", email="chw@kdss.at", role=c("aut", "cre"))
Depends: R (>= 3.0.2)
Imports: RCurl, RJSONIO, lubridate, plyr
License: GPL-3 | file LICENSE
LazyData: true
Packaged: 2014-04-01 05:54:51 UTC; toph
Author: Christoph Waldhauser [aut, cre]
Maintainer: Christoph Waldhauser
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-01 11:52:52

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New package domino with initial version 0.1-6
Package: domino
Version: 0.1-6
Type: Package
Title: Domino Data Lab R console bindings
Date: 2014-03-27
Author: Jacek Glodek
Maintainer: Jacek Glodek
Copyright: Domino Data Lab Inc.
Description: The Domino R package is a wrapper on top of the Domino command-line client. It lets you run Domino commands (e.g., "run", "upload", "download") directly from your R environment. Under the hood, it uses R's system function to run the Domino executable, which must be installed as a prerequisite.
License: MIT + file LICENSE
SystemRequirements: domino (~>1.2.0)
URL: http://www.dominoup.com/
Packaged: 2014-03-31 21:52:39 UTC; jglodek
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-01 11:52:41

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New package spcr with initial version 1.0
Package: spcr
Type: Package
Title: Sparse principal component regression
Version: 1.0
Date: 2014-4-1
Author: Shuichi Kawano
Maintainer: Shuichi Kawano
Description: This package computes the sparse principal component regression. The regularization parameters are optimized by cross-validation.
License: GPL (>= 2)
URL: http://www.ms.osakafu-u.ac.jp/~skawano/index.html
Repository: CRAN
Packaged: 2014-04-01 00:37:14 UTC; shuichi
NeedsCompilation: yes
Date/Publication: 2014-04-01 09:17:56

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Mon, 31 Mar 2014

New package TFDEA with initial version 0.8.3
Package: TFDEA
Version: 0.8.3
Title: TFDEA (Technology Forecasting using Data Envelopment Analysis) functions
Author: ETA Research Group at Portland State University
Maintainer: Tom Shott
Depends: R (>= 3.0.0), lpSolveAPI
License: GPL-2
Description: The package implements the TFDEA algorithm for technology forecasting. Using DEA it forecasts the capabilities of future technologies. The package also includes basic DEA (Data Envelopment Analysis) and SDEA (Super-efficiency Data Envelopment Analysis). In additional the package includes some standard technology forecasting data sets.
URL: https://projects.cecs.pdx.edu/projects/tshott-opentfdea
Packaged: 2014-03-31 20:46:58 UTC; tshott
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-31 23:06:47

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New package strap with initial version 1.0
Package: strap
Type: Package
Title: Stratigraphic Tree Analysis for Palaeontology
Version: 1.0
Date: 2014-01-22
Author: Mark A. Bell Graeme T. Lloyd .
Maintainer: Mark A. Bell
Depends: ape,geoscale
Description: Functions for the stratigraphic analysis of phylogenetic trees.
License: GPL (>= 2)
LazyData: yes
ByteCompile: yes
Packaged: 2014-03-31 17:43:26 UTC; gral
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-31 22:18:38

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New package r2d2 with initial version 1.0-0
Package: r2d2
Version: 1.0-0
Date: 2014-03-31
Title: Bivariate (Two-Dimensional) Confidence Region and Frequency Distribution
Authors@R: c(person("Arni", "Magnusson", role="aut"), person("Julian", "Burgos", role=c("aut","cre"), email="julian@hafro.is"), person(c("Gregory","R."), "Warnes", role="ctb"))
Author: Arni Magnusson [aut], Julian Burgos [aut, cre], Gregory R. Warnes [ctb]
Maintainer: Julian Burgos
Imports: KernSmooth, MASS, sp
Suggests: cluster, lattice
LazyData: yes
Description: This package provides generic functions to analyze the distribution of two continuous variables: 'conf2d' to calculate a smooth empirical confidence region, and 'freq2d' to calculate a frequency distribution.
License: GPL (>= 2)
Packaged: 2014-03-31 13:46:45 UTC; julian
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-31 19:10:21

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New package RImageJROI with initial version 0.1
Package: RImageJROI
Title: Read ImageJ Region of Interest (ROI) files
Description: Provides functions to read ImageJ (http://imagej.nih.gov/ij/) Region of Interest (ROI) files, to plot the ROIs and to convert them as spatstat (http://spatstat.org/) spatial patterns.
Version: 0.1
URL: https://github.com/davidcsterratt/RImageJROI
Date: 2014-03-20
Authors@R: c(person("David C", "Sterratt", role=c("aut", "cph", "cre"), email="david.c.sterratt@ed.ac.uk"), person("Mikko", "Vihtakari", role=c("aut", "cph"), email="mikko.vihtakari@uit.no"))
Depends: R (>= 3.0.2)
Imports: spatstat
Suggests: png, testthat
License: GPL-3
LazyData: true
Packaged: 2014-03-31 12:49:59 UTC; sterratt
Author: David C Sterratt [aut, cph, cre], Mikko Vihtakari [aut, cph]
Maintainer: David C Sterratt
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-31 15:37:32

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New package ManyTests with initial version 1.0
Package: ManyTests
Type: Package
Title: Multiple testing procedures of Cox (2011) and Wang and Cox (2007).
Version: 1.0
Date: 2014-03-31
Author: Christiana Kartsonaki
Maintainer: Christiana Kartsonaki
Description: Performs the multiple testing procedures of Cox (2011) and Wang and Cox (2007).
License: GPL-2
Packaged: 2014-03-31 14:17:44 UTC; ckartsonaki
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-31 16:28:59

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New package factas with initial version 2.3
Package: factas
Type: Package
Title: Data Mining Methods for Data Streams
Version: 2.3
Date: 2014-23-01
Author: Romain BAR
Maintainer: Romain BAR
Description: The package contains methods using stochastic approximation to analyse (big) data (streams).
Depends: R (>= 2.14.0), plotrix, FactoMineR, Matrix
License: GPL
Encoding: UTF-8
LazyLoad: yes
Packaged: 2014-03-31 11:16:10 UTC; romain
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-31 15:37:35
X-CRAN-Comment: Archived on 2014-01-01 as import conflicts were not corrected.

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New package EMP with initial version 1.0
Package: EMP
Type: Package
Title: Estimates EMP following Verbraken et al. (2014)
Version: 1.0
Date: 2014-03-31
Author: Cristian Bravo and Thomas Verbraken
Maintainer: Cristian Bravo
Depends: R (>= 3.0.0)
Description: Functions for estimating EMP (Expected Maximum Profit Measure) in Credit Scoring, according to Verbraken et al (2014).
License: GPL (>= 3)
Packaged: 2014-03-31 13:52:21 UTC; cristian
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-31 16:28:58

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New package TFMPvalue with initial version 0.0.2
Package: TFMPvalue
Version: 0.0.2
Date: 2014-03-31
Title: Efficient and accurate P-value computation for Position Weight Matrices.
Description: TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. This package is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15.
Author: Ge Tan
Maintainer: Ge Tan
Copyright: 2007 LIFL-USTL-INRIA
Imports: Rcpp(>= 0.11.1)
Depends: R (>= 3.0.1)
Suggests: RUnit
LinkingTo: Rcpp
License: GPL-2
Type: Package
NeedsCompilation: yes
LazyData: yes
Collate: TFMPvalue-sc2pv.R TFMPvalue-pv2sc.R TFMPvalue-lazyScore.R util.R
Packaged: 2014-03-31 12:12:52 UTC; gtan
Repository: CRAN
Date/Publication: 2014-03-31 14:47:58

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New package Reot with initial version 0.1.0
Package: Reot
Type: Package
Title: Empirical Orthogonal Teleconnections in R
Version: 0.1.0
Date: 2014-02-04
Author: Tim Appelhans, Florian Detsch, Thomas Nauss
Maintainer: Tim Appelhans
Description: A collection of functions to facilitate empirical orthogonal teleconnection analysis.
License: GPL (>= 3)
Depends: R (>= 2.10), Rcpp (>= 0.10.3), raster, foreach
LinkingTo: Rcpp
Suggests: latticeExtra, gridExtra, mapdata, scales
Packaged: 2014-03-31 10:05:18 UTC; ede
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-03-31 12:40:39

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New package EWGoF with initial version 1.0
Package: EWGoF
Type: Package
Title: Goodness-of-fit tests for the Exponential and two-parameter Weibull distributions
Version: 1.0
Date: 2014-01-13
Author: Meryam KRIT
Maintainer: Meryam KRIT
Description: This package contains a large number of the goodness-of-fit tests for the Exponential and Weibull distributions classified into families: the tests based on the empirical distribution function, the tests based on the probability plot, the tests based on the normalized spacings, the tests based on the Laplace transform and the likelihood based tests ...
License: GPL (>= 2.0)
Imports: Rcpp (>= 0.10.3), maxLik, miscTools
LinkingTo: Rcpp
LazyLoad: yes
Packaged: 2014-02-13 10:40:12 UTC; mkrit
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-03-31 10:28:57

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New package crossval with initial version 1.0.0
Package: crossval
Version: 1.0.0
Date: 2014-03-31
Title: Generic Functions for Cross Validation
Author: Korbinian Strimmer.
Maintainer: Korbinian Strimmer
Depends: R (>= 2.15.1)
Suggests: MASS
Description: This package contains generic functions for performing cross validation and for computing diagnostic errors.
License: GPL (>= 3)
URL: http://cran.r-project.org/web/packages/crossval/
Packaged: 2014-03-31 09:27:44 UTC; strimmer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-03-31 12:00:26

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