Tue, 16 Sep 2014

New package nat.templatebrains with initial version 0.4.1
Package: nat.templatebrains
Type: Package
Title: NeuroAnatomy Toolbox (nat) Extension for Handling Template Brains
Version: 0.4.1
Date: 2014-09-13
Author: James Manton and Greg Jefferis
Maintainer: James Manton
Description: Extends package nat (NeuroAnatomy Toolbox) by providing objects and functions for handling template brains.
License: GPL-3
Depends: R (>= 2.10), rgl, nat (>= 1.5.9)
Suggests: testthat
Packaged: 2014-09-16 11:16:57 UTC; jefferis
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 18:40:27

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New package fRegression with initial version 3011.81
Package: fRegression
Title: Rmetrics - Regression Based Decision and Prediction
Date: 2013-12-17
Version: 3011.81
Author: Rmetrics Core Team, Diethelm Wuertz [aut], Tobias Setz [cre] Yohan Chalabi [ctb]
Maintainer: Tobias Setz
Description: Environment for teaching "Financial Engineering and Computational Finance".
Depends: R (>= 2.15.1), timeDate, timeSeries, fBasics
Imports: lmtest, mgcv, nnet, polspline
Suggests: methods, MASS, RUnit
Note: SEVERAL PARTS ARE STILL PRELIMINARY AND MAY BE CHANGED IN THE FUTURE. THIS TYPICALLY INCLUDES FUNCTION AND ARGUMENT NAMES, AS WELL AS DEFAULTS FOR ARGUMENTS AND RETURN VALUES.
LazyData: yes
License: GPL (>= 2)
URL: http://www.rmetrics.org
Packaged: 2014-09-16 10:08:42 UTC; Tobi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 18:40:22

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New package UPMASK with initial version 1.0
Package: UPMASK
Type: Package
Title: Unsupervised Photometric Membership Assignment in Stellar Clusters
Version: 1.0
Date: 2014-09-15
Author: Alberto Krone-Martins, Andre Moitinho
Maintainer: Alberto Krone-Martins
Description: An implementation of the UPMASK method for performing membership assignment in stellar clusters in R. It is prepared to use photometry and spatial positions, but it can take into account other types of data. The method is able to take into account arbitrary error models, and it is unsupervised, data-driven, physical-model-free and relies on as few assumptions as possible. The approach followed for membership assessment is based on an iterative process, principal component analysis, a clustering algorithm and a kernel density estimation.
Depends: R (>= 3.0)
License: GPL (>= 3)
Imports: parallel, MASS, RSQLite, DBI
NeedsCompilation: no
Packaged: 2014-09-16 09:32:25 UTC; brain
Repository: CRAN
Date/Publication: 2014-09-16 12:28:13

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New package polidata with initial version 0.1.0
Package: polidata
Type: Package
Title: Political Data Interface in R
Description: This package provides easy access to various political data APIs directly from R. For example, you can access Google Civic Information API (https://developers.google.com/civic-information/) or Sunlight Congress API (https://sunlightlabs.github.io/congress/) for US Congress data, and POPONG API (http://data.popong.com/) for South Korea National Assembly data.
Version: 0.1.0
Date: 2014-06-13
Authors@R: c(person("Eunjeong", "Park", role = c("aut", "cre"), email = "ejpark04@snu.ac.kr"), person("Jong Hee", "Park", role = "aut", email = "jongheepark@snu.ac.kr"))
Maintainer: Eunjeong Park
License: MIT + file LICENSE
Imports: jsonlite, RCurl
Suggests: knitr
URL: http://github.com/e9t/polidata-r
BugReports: https://github.com/e9t/polidata-r/issues
VignetteBuilder: knitr
Packaged: 2014-09-16 06:57:36 UTC; e9t
Author: Eunjeong Park [aut, cre], Jong Hee Park [aut]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 11:58:04

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New package smoother with initial version 1.0.0.0
Package: smoother
Type: Package
Title: Smoother
Version: 1.0.0.0
Date: 2014-09-13
Author: Nicholas Hamilton
Maintainer: Nicholas Hamilton
Description: A port of the matlab gaussian window smoothing function
License: GPL-2
Collate: 'smoother-package.R' 'functions.R' 'smth-gaussian.R' 'smth.R'
Packaged: 2014-09-16 03:57:42 UTC; nick
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 07:34:01

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New package m4fe with initial version 0.1
Package: m4fe
Title: Models for Financial Economics
Version: 0.1
Author: Nathan Esau
Maintainer: Nathan Esau
Description: Provides binomial tree models for European, American and Asian Options as well as Interest Rates. Monte Carlo Simulation and Methods for Solving Differential Equations are also included.
Depends: R (>= 3.1.0)
License: GPL-2
LazyData: true
Packaged: 2014-09-16 02:40:33 UTC; nate
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 07:33:58

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Mon, 15 Sep 2014

New package kselection with initial version 0.1.0
Package: kselection
Type: Package
Title: Selection of k in k-means clustering
Version: 0.1.0
Date: 2014-09-15
Author: Daniel Rodriguez Perez
Maintainer: Daniel Rodriguez Perez
Description: Selection of k in k-means clustering based on Pham et al. paper ``Selection of k in k-means clustering''
License: GPL-3
URL: https://github.com/drodriguezperez/kselection
BugReports: https://github.com/drodriguezperez/kselection/issues
Imports: tools
Suggests: testthat
Packaged: 2014-09-15 19:42:02 UTC; daniel
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 03:19:49

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New package redcapAPI with initial version 1.0
Package: redcapAPI
Type: Package
Title: R interface to REDCap
Version: 1.0
Date: 2014-09-15
Author: Benjamin Nutter. Initiated by Jeffrey Horner and Will Gray with contributions from Jeremy Stephens, and Will Beasley
Maintainer: Benjamin Nutter
Description: Access data stored in REDCap databases using the Application Programming Interface (API). REDCap (Research Electronic Data CAPture) is a web application for building and managing online surveys and databases developed at Vanderbilt University. The API allows users to access data and project meta data (such as the data dictionary) from the web programmatically. The redcapAPI package facilitates the process of accessing data with options to prepare an analysis-ready data set consistent with the definitions in a database's data dictionary.
License: GPL-2
Imports: chron, httr, stringr
Suggests: DBI, Hmisc
LazyLoad: yes
URL: https://github.com/nutterb/redcapAPI/wiki, https://github.com/nutterb/redcapAPI, http://project-redcap.org
Packaged: 2014-09-15 13:10:44 UTC; nutterb
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-16 02:22:08

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New package GlobalOptions with initial version 0.0.1
Package: GlobalOptions
Type: Package
Title: Generate functions to get or set global options
Version: 0.0.1
Date: 2014-9-15
Author: Zuguang Gu
Maintainer: Zuguang Gu
Depends: R (>= 2.10.0)
Imports: methods
Suggests: testthat (>= 0.3)
Description: Generate functions to get or set global options
URL: https://github.com/jokergoo/GlobalOptions
License: GPL (>= 2)
Packaged: 2014-09-15 21:09:26 UTC; IBM
Repository: CRAN
Date/Publication: 2014-09-16 02:03:23
NeedsCompilation: no

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New package SOR with initial version 0.22
Package: SOR
Type: Package
Title: Estimation using Sequential Offsetted Regression
Version: 0.22
Date: 2014-9-15
Author: Lee S. McDaniel, Jonathan S. Schildcrout
Maintainer: Lee S. McDaniel
Depends: Matrix, stats
Description: Estimation for longitudinal data following outcome dependent sampling using the sequential offsetted regression technique. Includes support for binary, count, and continuous data.
License: GPL (>= 2)
Packaged: 2014-09-15 14:42:51 UTC; lmcda4
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-15 17:05:56

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New package propOverlap with initial version 1.0
Package: propOverlap
Type: Package
Title: Feature (gene) selection based on the Proportional Overlapping Scores
Version: 1.0
Date: 2014-09-15
Author: Osama Mahmoud, Andrew Harrison, Aris Perperoglou, Asma Gul, Zardad Khan, Berthold Lausen
Maintainer: Osama Mahmoud
Description: A package for selecting the most relevant features (genes) in the high-dimensional binary classification problems. The discriminative features are identified using analyzing the overlap between the expression values across both classes. The package includes functions for measuring the proportional overlapping score for each gene avoiding the outliers effect. The used measure for the overlap is the one defined in the "Proportional Overlapping Score (POS)" technique for feature selection. A gene mask which represents a gene's classification power can also be produced for each gene (feature). The set size of the selected genes might be set by the user. The minimum set of genes that correctly classify the maximum number of the given tissue samples (observations) can be also produced.
Depends: R (>= 2.10), Biobase
LazyLoad: yes
License: GPL (>= 2)
Repository: CRAN
Packaged: 2014-09-15 12:28:08 UTC; osama
NeedsCompilation: no
Date/Publication: 2014-09-15 17:06:03

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New package hot.deck with initial version 1.0
Package: hot.deck
Type: Package
Title: Multiple Hot-deck Imputation
Version: 1.0
Date: 2014-09-03
Author: Skyler Cranmer, Jeff Gill, Natalie Jackson, Andreas Murr, Dave Armstrong
Maintainer: Dave Armstrong
Description: Performs multiple hot-deck imputation of categorical and continuous variables in a data frame.
License: GPL (>= 2)
Depends: R (>= 3.0), mice
Suggests: knitr, mitools, miceadds, Zelig
Packaged: 2014-09-15 14:26:05 UTC; armstrod
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-15 17:06:01

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New package nonnest2 with initial version 0.1-1
Package: nonnest2
Title: Tests of non-nested models
Version: 0.1-1
Author: Ed Merkle and Dongjun You
Maintainer: Dongjun You
Description: Testing non-nested models via theory supplied by Vuong (1989). Includes tests of model distinguishability and of model fit that can be applied to both nested and non-nested models. Also includes functionality to obtain confidence intervals associated with AIC and BIC.
Depends: R (>= 3.0.0)
Imports: CompQuadForm, mvtnorm, sandwich
License: GPL-2 | GPL-3
LazyData: yes
Packaged: 2014-09-15 11:53:15 UTC; Jun
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-15 14:20:59

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New package binequality with initial version 0.6.1
Package: binequality
Type: Package
Title: Methods for Analyzing Binned Income Data
Version: 0.6.1
Date: 2014-09-14
Author: Samuel V. Scarpino, Paul von Hippel, and Igor Holas
Maintainer: Samuel V. Scarpino
Description: Methods for model selection, model averaging, and calculating metrics, such as the Gini, Theil, Mean Log Deviation, etc, on binned income data where the topmost bin is right-censored. We provide both a non-parametric method, termed the bounded midpoint estimator (BME), which assigns cases to their bin midpoints; except for the censored bins, where cases are assigned to an income estimated by fitting a Pareto distribution. Because the usual Pareto estimate can be inaccurate or undefined, especially in small samples, we implement a bounded Pareto estimate that yields much better results. We also provide a parametric approach, which fits distributions from the generalized beta (GB) family. Because some GB distributions can have poor fit or undefined estimates, we fit 10 GB-family distributions and use multimodel inference to obtain definite estimates from the best-fitting distributions. We also provide binned income data from all United States of America school districts, counties, and states.
License: GPL (>= 3.0)
LazyLoad: yes
Depends: R (>= 2.10), gamlss (>= 4.2.7), gamlss.cens (>= 4.2.7), gamlss.dist (>= 4.3.0)
Imports: survival (>= 2.37-7), ineq (>= 0.2-11)
Packaged: 2014-09-14 22:50:02 UTC; scarpino
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-15 07:27:50

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Sun, 14 Sep 2014

New package DLMtool with initial version 1.34
Package: DLMtool
Type: Package
Title: Data-Limited Methods Toolkit
Version: 1.34
Date: 2014-09-11
Author: Tom Carruthers
Maintainer: Tom Carruthers
Description: Simulation testing and implementation of data-limited fishery stock assessment methods
License: GPL-2
Depends: R (>= 2.10.0), methods, snowfall, boot, MASS
LazyData: yes
LazyLoad: yes
VignetteBuilder: knitr
Suggests: knitr
Packaged: 2014-09-14 05:06:54 UTC; Tom
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-14 10:12:18

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Sat, 13 Sep 2014

New package recosystem with initial version 0.2.4
Package: recosystem
Type: Package
Title: Recommender System using Matrix Factorization
Version: 0.2.4
Date: 2014-09-12
Author: Yixuan Qiu, Chih-Jen Lin, Yu-Chin Juan, Yong Zhuang, Wei-Sheng Chin and other contributors. See file AUTHORS for details.
Maintainer: Yixuan Qiu
Description: This package is an R wrapper of the libmf library (http://www.csie.ntu.edu.tw/~cjlin/libmf/) for recommender system using matrix factorization. It is typically used to approximate an incomplete matrix using the product of two matrices in a latent space. Other common names for this task include "collaborative filtering", "matrix completion", "matrix recovery", etc.
License: BSD_3_clause + file LICENSE
Copyright: see file COPYRIGHTS
URL: https://github.com/yixuan/recosystem
BugReports: https://github.com/yixuan/recosystem/issues
SystemRequirements: C++11
Depends: methods
Imports: Rcpp (>= 0.11.0)
Suggests: knitr
LinkingTo: Rcpp
VignetteBuilder: knitr
Packaged: 2014-09-12 20:52:34 UTC; qyx
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-13 08:01:57

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Fri, 12 Sep 2014

New package treatSens with initial version 1.0
Package: treatSens
Type: Package
Title: Sensitivity analysis for causal inference
Version: 1.0
Date: 2014-09-02
Author: Nicole Bohme Carnegie, Masataka Harada, Jennifer Hill
Maintainer: "Nicole Bohme Carnegie"
Depends: R (>= 3.1.0)
Suggests: doParallel, foreach
Description: Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment.
License: GPL-2
LazyLoad: yes
LazyData: yes
Packaged: 2014-09-12 17:24:24 UTC; carnegin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-12 20:27:07

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New package nettools with initial version 1.0.1
Package: nettools
Type: Package
Title: A Network Comparison Framework
Version: 1.0.1
Date: 2014-09-02
Authors@R: c(person("Michele","Filosi",role=c("aut","cre"), email = "filosi@fbk.eu"), person("Roberto", "Visintainer", role = "aut", email = "visintainer@fbk.eu"), person("Samantha", "Riccadonna", role = "aut", email = "samantha.riccadonna@fmach.it"), person("Giuseppe", "Jurman", role = "ctb", email = "jurman@fbk.eu"), person("Cesare", "Furlanello", role = "ctb", email = "furlan@fbk.eu"))
Maintainer: Michele Filosi
Depends: R (>= 2.14.1), methods
Imports: parallel, rootSolve, dtw, WGCNA, minet, Matrix, minerva, combinat, igraph
Description: A collection of network inference methods for co-expression networks, quantitative network distances and a novel framework for network stability analysis.
License: CC BY-NC-SA 4.0
Packaged: 2014-09-11 10:37:46 UTC; michele
Author: Michele Filosi [aut, cre], Roberto Visintainer [aut], Samantha Riccadonna [aut], Giuseppe Jurman [ctb], Cesare Furlanello [ctb]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-12 16:16:26

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New package Mobilize with initial version 2.16-4
Package: Mobilize
Type: Package
Title: Mobilize plots and functions
Version: 2.16-4
Date: 2014-09-11
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
Description: Some canned plots and functions designed for the mobilize project. Designed to be called remotely.
License: GPL
Depends: R (>= 2.14), stats, methods, Ohmage
Imports: ggplot2, wordcloud, reshape2
Suggests: XML, maps
Packaged: 2014-09-11 10:24:17 UTC; jeroen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-12 07:53:18

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Thu, 11 Sep 2014

New package lefse with initial version 0.1
Package: lefse
Type: Package
Title: Phylogenetic and Functional Analyses for Ecology
Version: 0.1
Date: 2014-09-04
Author: Nathan G. Swenson
Maintainer: Nathan G. Swenson
Description: Utilizing phylogenetic and functional information for the analyses of ecological datasets. The analyses include methods for quantifying the phylogenetic and functional diversity of assemblages.
License: GPL-2 | GPL-3
Depends: R (>= 2.10)
Imports: ape, picante, geiger, fBasics, SDMTools, vegan
Packaged: 2014-09-05 10:37:55 UTC; nathanswenson
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-11 21:03:26

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New package GENLIB with initial version 1.0
Package: GENLIB
Type: Package
Title: Genealogical Data Analysis
Version: 1.0
Date: 2012-04-04
Author: Louis Houde, Jean-Francois Lefebvre, Valery Roy-Lagace, Sebastien Lemieux
Maintainer: Marie-Helene Roy-Gagnon
Description: Takes genealogical data frames and calculates different demographic variables such as genetic contribution, kinship, etc...
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 3.0), Rcpp (>= 0.9.10)
Imports: kinship2, methods, bootstrap, Matrix, lattice, quadprog, foreach, parallel, doParallel
LinkingTo: Rcpp
Packaged: 2014-09-11 16:31:06 UTC; sainte-justine\lefjea01
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-11 21:02:19

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New package gapmap with initial version 0.0.1
Package: gapmap
Type: Package
Title: Functions for Drawing Gapped Cluster Heatmap with ggplot2
Version: 0.0.1
URL: https://bitbucket.org/biovizleuven/gapmap/
Date: 2014-09-10
Author: Ryo Sakai
Maintainer: Ryo Sakai
Description: The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.
License: GPL-2 | GPL-3
Depends: ggplot2, grid, reshape2
Suggests: knitr, dendsort
VignetteBuilder: knitr
Packaged: 2014-09-11 10:21:51 UTC; Ryo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-11 13:06:15

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New package FRESA.CAD with initial version 1.0
Package: FRESA.CAD
Type: Package
Title: FeatuRE Selection Algorithms for Computer Aided Diagnosis
Version: 1.0
Date: 2014-09-10
Author: Jose Gerardo Tamez-Pena
Maintainer: Jose Gerardo Tamez-Pena
Description: FRESA.CAD provides a set of functions and feature selection algorithms for building Computer Aided Diagnosis Models
License: LGPL (>= 2)
Depends: R (>= 3.0.0),Hmisc,pROC,stringr,miscTools,survival
Suggests: class, cvTools, glmnet, speedglm, gplots, RColorBrewer, nlme, rpart
Packaged: 2014-09-11 12:24:47 UTC; Jose Tamez
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-11 15:08:50

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New package lcmm with initial version 1.6.6
Package: lcmm
Type: Package
Title: Estimation of Extended Mixed Models Using Latent Classes and Latent Processes
Version: 1.6.6
Date: 2014-09-10
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima
Description: Functions for the estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear univariate or multivariate longitudinal outcomes using a maximum likelihood estimation method.
License: GPL (>= 2.0)
Depends: R (>= 2.9.0), survival
LazyLoad: yes
Packaged: 2014-09-10 09:08:05 UTC; vp3
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-11 11:39:40

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New package gdsfmt with initial version 1.1.0
Package: gdsfmt
Type: Package
Title: R Interface to CoreArray Genomic Data Structure (GDS) files
Version: 1.1.0
Date: 2014-09-10
Depends: R (>= 2.14.0)
Imports: methods
Suggests: parallel, RUnit
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
BugReports: http://github.com/zhengxwen/gdsfmt/issues
Description: This package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory. The gdsfmt package offers the efficient operations specifically designed for integers with less than 8 bits, since a single genetic/genomic variant, such like single-nucleotide polymorphism, usually occupies fewer bits than a byte. Data compression and decompression are also supported. It is allowed to read a GDS file in parallel with multiple R processes supported by the parallel package.
License: LGPL-3
URL: http://corearray.sourceforge.net/, http://github.com/zhengxwen/gdsfmt
Packaged: 2014-09-11 06:43:57 UTC; sts
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-11 12:33:04

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New package recosystem with initial version 0.2.3
Package: recosystem
Type: Package
Title: Recommender System using Matrix Factorization
Version: 0.2.3
Date: 2014-09-08
Authors@R: c(person(given = "Yixuan", family = "Qiu", role = c("aut", "cre"), email = "yixuan.qiu@cos.name"), person(given = "Chih-Jen", family = "Lin", role = c("aut","cph"), comment = "original C++ code"), person(given = "Yu-Chin", family = "Juan", role = c("aut","cph"), comment = "original C++ code"), person(given = "Yong", family = "Zhuang", role = c("aut","cph"), comment = "original C++ code"), person(given = "Wei-Sheng", family = "Chin", role = c("aut","cph"), comment = "original C++ code"))
Maintainer: Yixuan Qiu
Description: This package is an R wrapper of the libmf library (http://www.csie.ntu.edu.tw/~cjlin/libmf/) for recommender system using matrix factorization. It is typically used to approximate an incomplete matrix using the product of two matrices in a latent space. Other common names for this task include "collaborative filtering", "matrix completion", "matrix recovery", etc.
License: BSD_3_clause + file LICENSE
Copyright: see file COPYRIGHTS
URL: https://github.com/yixuan/recosystem
BugReports: https://github.com/yixuan/recosystem/issues
SystemRequirements: C++11
Depends: methods
Imports: Rcpp (>= 0.11.0)
Suggests: knitr
LinkingTo: Rcpp
VignetteBuilder: knitr
Packaged: 2014-09-08 15:06:23 UTC; qyx
Author: Yixuan Qiu [aut, cre], Chih-Jen Lin [aut, cph] (original C++ code), Yu-Chin Juan [aut, cph] (original C++ code), Yong Zhuang [aut, cph] (original C++ code), Wei-Sheng Chin [aut, cph] (original C++ code)
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-11 10:00:26

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New package rChoiceDialogs with initial version 1.0.6
Package: rChoiceDialogs
Type: Package
Title: rChoiceDialogs collection
Version: 1.0.6
Date: 2014-09-05
Authors@R: c(person("Alex","Lisovich",role=c("aut","cre"),email="alex.lisovich@gmail.com"), person("Roger","Day",role="aut",email="day01@pitt.edu"), person("Sun Microsystems, Inc",role="cph", comment="swing-layout-1.0.4.jar, download from http://www.java2s.com/Code/Jar/s/Downloadswinglayout104jar.htm"))
Description: Collection of portable choice dialog widgets
License: LGPL (>= 2.1)
Depends: rJava, utils
Imports: tcltk
Collate: 'zzz.R' 'rChoiceDialogs-package.R' 'rFileChooser.R' 'rListChooser.R' 'rMiscFunctions.R'
Packaged: 2014-09-10 20:49:54 UTC; alex
Author: Alex Lisovich [aut, cre], Roger Day [aut], Sun Microsystems, Inc [cph] (swing-layout-1.0.4.jar, download from http://www.java2s.com/Code/Jar/s/Downloadswinglayout104jar.htm)
Maintainer: Alex Lisovich
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-11 07:26:55

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New package OjaNP with initial version 0.9-8
Package: OjaNP
Type: Package
Title: Multivariate Methods Based on the Oja Median and Related Concepts
Version: 0.9-8
Date: 2014-09-10
Author: Daniel Fischer, Jyrki Möttönen, Klaus Nordhausen, Daniel Vogel
Maintainer: Klaus Nordhausen
Depends: R (>= 2.9.0), ICS, ICSNP
Description: The package provides functions for the Oja median, Oja signs and ranks and methods based upon them.
License: GPL (>= 2)
Encoding: latin1
LazyLoad: yes
Packaged: 2014-09-10 09:19:18 UTC; klaus
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-11 08:48:28

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New package funFEM with initial version 1.0
Package: funFEM
Type: Package
Title: Clustering in the Discriminative Functional Subspace
Version: 1.0
Date: 2014-09-06
Author: Charles Bouveyron
Depends: R (>= 2.10), MASS, fda, elasticnet
Maintainer: Charles Bouveyron
Description: The funFEM algorithm (Bouveyron et al., 2014) allows to cluster functional data by modeling the curves within a common and discriminative functional subspace.
License: GPL-2
LazyLoad: yes
Packaged: 2014-09-10 07:52:48 UTC; charles
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-11 07:36:22

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Wed, 10 Sep 2014

New package saery with initial version 1.0
Package: saery
Type: Package
Title: Small Area Estimation for Rao and Yu Model
Version: 1.0
Date: 2014-09-10
Author: Maria Dolores Esteban Lefler, Domingo Morales Gonzalez, Agustin Perez Martin
Maintainer: Agustin Perez Martin
Description: A complete set of functions to calculate several EBLUP (Empirical Best Linear Unbiased Predictor) estimators and their mean squared errors. All estimators are based on an area-level linear mixed model introduced by Rao and Yu in 1994 (see documentation). The REML method is used for fitting this model.
License: GPL-2
LazyData: true
Packaged: 2014-09-10 20:48:45 UTC; agus
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-10 23:18:02

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New package Ohmage with initial version 2.11-4
Package: Ohmage
Type: Package
Title: R Client for Ohmage 2 server
Version: 2.11-4
Date: 2014-09-10
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
Description: R Client for Ohmage 2 server. Implements basic R functions to retrieve and process data.
License: GPL
Depends: R (>= 2.14), stats, methods
Imports: RCurl, RJSONIO
Suggests: XML
Packaged: 2014-09-10 13:00:58 UTC; jeroen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-10 15:14:12

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New package ForwardSearch with initial version 1.0
Package: ForwardSearch
Type: Package
Title: Forward Search using asymptotic theory
Version: 1.0
Date: 2014-09-10
Author: Bent Nielsen
Maintainer: Bent Nielsen
URL: http://users.ox.ac.uk/~nuff0078/
Description: Forward Search analysis of time series regressions. Implements the asymptotic theory developed in Johansen and Nielsen (2013, 2014).
License: GPL-3
Depends: robustbase
Packaged: 2014-09-10 11:19:57 UTC; Nielsen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-10 13:56:09

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New package RImpala with initial version 0.1.4
Package: RImpala
Version: 0.1.4
Date: 2014-09-10
Title: R and Impala
Author: Vijay Raajaa, Austin Chungath Vincent, Sachin Sudarshana, Vikas Raguttahalli
Maintainer: Vijay Raajaa
Contact: Austin Chungath Vincent ,Vikas Raguttahalli , Sachin Sudarshana
Description: RImpala facilitates the connection and execution of distributed queries using Cloudera Impala, which is a massively parallel processing (MPP) SQL query engine that runs natively in Apache Hadoop. Impala supports jdbc integration which RImpala utilizes to establish the connection between R and Impala.
Depends: R (>= 2.7.0), rJava (>= 0.5-0)
SystemRequirements: Java (>= 1.5)
License: GPL-3
Packaged: 2014-09-10 08:47:33 UTC; root
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-10 11:43:20

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New package RDML with initial version 0.4-2
Package: RDML
Type: Package
Title: Importing real-time thermo cycler (qPCR) data from RDML format files
Version: 0.4-2
LazyData: true
Date: 2014-09-10
Description: Imports real-time thermo cycler (qPCR) data from RDML format files and transforms to the appropriate formats of the 'qpcR' and 'chipPCR' packages.
Authors@R: c( person("Konstantin A.", "Blagodatskikh", email = "k.blag@yandex.ru", role = c("cre", "aut")), person("Stefan", "Roediger", email = "stefan.roedigier@hs-lausitz.de", role = "aut"), person("Michal", "Burdukiewicz", email = "michalburdukiewicz@gmail.com", role = "aut"))
License: GPL (>= 2)
URL: https://github.com/kablag/RDML
Depends: XML (>= 3.98-1.1)
Imports: chipPCR (>= 0.0.8-1)
Suggests: qpcR (>= 1.3-9)
Packaged: 2014-09-10 08:55:14 UTC; kablag
Author: Konstantin A. Blagodatskikh [cre, aut], Stefan Roediger [aut], Michal Burdukiewicz [aut]
Maintainer: Konstantin A. Blagodatskikh
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-10 11:38:16

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Tue, 09 Sep 2014

New package vcrpart with initial version 0.2-1
Package: vcrpart
Type: Package
Title: Tree-Based Varying Coefficient Regression for Generalized Linear and Ordinal Mixed Models
Version: 0.2-1
Date: 2014-09-10
Authors@R: c( person("Reto", "Buergin", role = c("aut", "cre", "cph"), email = "rbuergin@gmx.ch"), person("Gilbert", "Ritschard", role = c("ctb", "ths"), email = "gilbert.ritschard@unige.ch"))
Maintainer: Reto Buergin
Description: Recursive partitioning algorithm for varying coefficient generalized linear models and ordinal 2-stage linear mixed models. Special features are coefficient-wise partitioning, non-varying coefficients and partitioning of time-varying variables in longitudinal ordinal regression.
License: GPL (>= 2)
Depends: R (>= 3.1.0), parallel, partykit
Imports: stats, grid, graphics, methods, nlme, rpart, numDeriv, ucminf, zoo, sandwich, strucchange
LazyLoad: yes
NeedsCompilation: yes
Packaged: 2014-09-09 22:27:25 UTC; rbuergin
Author: Reto Buergin [aut, cre, cph], Gilbert Ritschard [ctb, ths]
Repository: CRAN
Date/Publication: 2014-09-10 00:51:30

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New package eegkitdata with initial version 1.0
Package: eegkitdata
Type: Package
Title: Data for package eegkit
Version: 1.0
Date: 2014-09-09
Author: Nathaniel E. Helwig
Maintainer: Nathaniel E. Helwig
Description: Contains the example EEG data used in the package eegkit. Also contains code for easily creating larger EEG datasets from the EEG Database on the UCI Machine Learning Repository.
License: GPL (>= 2)
Packaged: 2014-09-09 17:33:17 UTC; Nate
Depends: R (>= 2.10)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-10 00:27:03

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New package eegkit with initial version 1.0-0
Package: eegkit
Type: Package
Title: Toolkit for electroencephalography data
Version: 1.0-0
Date: 2014-09-09
Author: Nathaniel E. Helwig
Maintainer: Nathaniel E. Helwig
Depends: R (>= 3.1.1), bigsplines, eegkitdata, ica, rgl
Description: Analysis and visualization tools for electroencephalography (EEG) data. Includes functions for plotting (a) EEG caps, (b) single- and multi-channel EEG time courses, and (c) EEG spatial maps. Also includes smoothing and Independent Component Analysis functions for EEG data analysis.
License: GPL (>= 2)
Packaged: 2014-09-09 17:42:07 UTC; Nate
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-10 00:55:52

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New package cmvnorm with initial version 1.0
Package: cmvnorm
Type: Package
Title: Complex multivariate Gaussian distribution
Version: 1.0
Date: 2014-01-10
Author: Robin K. S. Hankin
Depends: emulator (>= 1.2-15)
Imports: elliptic
Maintainer: Robin K. S. Hankin
Description: various utilities for the complex multivariate Gaussian distribution
VignetteBuilder: elliptic, emulator
License: GPL-2
Packaged: 2014-09-09 20:37:37 UTC; rhankin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-10 00:24:00

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New package micropan with initial version 1.0
Package: micropan
Type: Package
Title: Microbial Pan-genome Analysis
Version: 1.0
Date: 2014-09-03
Author: Lars Snipen and Kristian Hovde Liland
Maintainer: Lars Snipen
Description: A collection of functions for computations and visualizations of microbial pan-genomes.
Depends: R (>= 2.15.0), igraph
License: GPL-2
LazyData: FALSE
ZipData: TRUE
Packaged: 2014-09-09 09:30:39 UTC; larssn
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-09 14:18:33

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New package couchDB with initial version 1.3.0
Package: couchDB
Type: Package
Title: Connect and work with couchDB databases
Version: 1.3.0
Date: 2014-02-25
Author: Aleksander Dietrichson
Maintainer: Aleksander Dietrichson
Depends: R (>= 3.0.0), RCurl, bitops, httr, rjson
Description: Interface to couchDB
SystemRequirements: couchDB instance to connect to and work on.
License: AGPL-3
Packaged: 2014-09-08 17:58:38 UTC; sasha
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-09 07:24:25

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Mon, 08 Sep 2014

New package tlm with initial version 0.1.2
Package: tlm
Type: Package
Title: Effects under Linear, Logistic and Poisson Regression Models with Transformed Variables.
Version: 0.1.2
Date: 2014-09-08
Author: Jose Barrera-Gomez and Xavier Basagana
Maintainer: Jose Barrera-Gomez
Depends: R (>= 3.0.1), stats, utils, boot
Description: Computation of effects under linear, logistic and Poisson regression models with transformed variables. Logarithm and power transformations are allowed. Effects can be displayed both numerically and graphically in both the original and the transformed space of the variables.
License: GPL (>= 2)
Packaged: 2014-09-08 16:48:10 UTC; jbarrera
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-08 19:23:03

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New package funHDDC with initial version 1.0
Package: funHDDC
Type: Package
Title: Model-based clustering in group-specific functional subspaces
Version: 1.0
Date: 2014-09-06
Author: C. Bouveyron & J. Jacques
Maintainer: Charles Bouveyron
Depends: fda
Description: The package provides the funHDDC algorithm (Bouveyron & Jacques, 2011) which allows to cluster functional data by modeling each group within a specific functional subspace.
License: GPL-2
LazyLoad: yes
Packaged: 2014-09-08 14:12:24 UTC; charles
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-08 19:15:54

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New package slackr with initial version 1.2
Package: slackr
Type: Package
Title: Send messages, images, R objects and files to Slack.com channels/users
Version: 1.2
Date: 2014-09-08
Author: Bob Rudis (@hrbrmstr) & Jay Jacobs (@jayjacobs)
Maintainer: Bob Rudis
Description: Slackr contains functions that make it possible to interact with Slack.com messaging platform. When you need to share information/data from R, rather than resort to copy/paste in e-mails or other services like Skype, you can use this package to send well-formatted output from multiple R objects and expressions to all teammates at the same time with little effort. You can also send images from the current graphics device, R objects (as RData), and upload files.
URL: http://github.com/hrbrmstr/slackr
BugReports: https://github.com/hrbrmstr/slackr/issues
License: MIT + file LICENSE
Suggests: testthat
Depends: R (>= 3.0.0), httr (>= 0.4.0), jsonlite, data.table (>= 1.9.2), ggplot2
Packaged: 2014-09-08 11:02:54 UTC; bob
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-08 13:31:26

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New package lunar with initial version 0.1-04
Package: lunar
Type: Package
Title: Lunar Phase & Distance, Seasons and Other Environmental Factors
Author: Emmanuel Lazaridis [aut, cre]
Maintainer: Emmanuel Lazaridis
Depends: R (>= 2.10.0)
Description: Provides functions to calculate lunar and other environmental covariates.
License: MIT + file LICENSE
Encoding: UTF-8
LazyLoad: no
URL: http://statistics.lazaridis.eu
Authors@R: c(person(given = "Emmanuel", family = "Lazaridis", email="emmanuel@lazaridis.eu", role = c("aut", "cre")))
Version: 0.1-04
Date: 2014-09-04
Packaged: 2014-09-04 14:50:09 UTC; james
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-08 10:59:14

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Sun, 07 Sep 2014

New package PerfMeas with initial version 1.2.1
Package: PerfMeas
Type: Package
Title: PerfMeas: Performance Measures for ranking and classification tasks
Version: 1.2.1
Date: 2014-09-07
Author: Giorgio Valentini, Matteo Re -- Universita' degli Studi di Milano
Maintainer: Giorgio Valentini
Description: Package that implements different performance measures for classification and ranking tasks. AUC, precision at a given recall, F-score for single and multiple classes are available.
License: GPL (>= 2)
LazyLoad: yes
Depends: limma, graph, RBGL
Packaged: 2014-09-07 09:09:55 UTC; valenti
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-07 11:28:42

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New package bionetdata with initial version 1.0.1
Package: bionetdata
Type: Package
Title: Biological and chemical data networks
Version: 1.0.1
Date: 2014-09-07
Author: Matteo Re, Giorgio Valentini -- Universita' degli Studi di Milano
Maintainer: Matteo Re
Description: Data Package that includes several examples of chemical and biological data networks, i.e. data graph structured.
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 2.10)
Packaged: 2014-09-07 09:28:57 UTC; valenti
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-07 13:10:15

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New package copCAR with initial version 1.0
Package: copCAR
Version: 1.0
Date: 2014
Title: Fitting the copCAR regression model for discrete areal data
Type: Package
Author: Emily Goren and John Hughes
Maintainer: John Hughes
Depends: numDeriv, Rcpp, spam
Suggests: lattice
LinkingTo: Rcpp, RcppArmadillo
RcppModules: buildM, inverse
Description: copCAR provides tools for fitting the copCAR regression model for discrete areal data. Three types of estimation are supported: continuous extension, composite marginal likelihood, and distributional transform.
License: GPL (>= 2)
URL: http://www.biostat.umn.edu/~johnh
Packaged: 2014-09-06 20:00:02 UTC; jphughesjr
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-07 08:33:10

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Sat, 06 Sep 2014

New package GDAtools with initial version 1.3
Package: GDAtools
Type: Package
Title: A toolbox for the analysis of categorical data in social sciences, and especially Geometric Data Analysis.
Version: 1.3
Date: 2014-09-05
Author: Nicolas Robette
Maintainer: Nicolas Robette
Imports: FactoMineR
Suggests: cluster, WeightedCluster
Description: This package contains functions for 'specific' MCA (Multiple Correspondence Analysis), 'class specific' MCA, computing and plotting structuring factors and concentration ellipses, 'standardized' MCA, inductive tests and others tools for Geometric Data Analysis. It also provides functions for the translation of logit models coefficients into percentages (forthcoming), weighted contingency tables and an association measure - i.e. Percentages of Maximum Deviation from Independence (PEM).
License: GPL (>= 2)
URL: http://nicolas.robette.free.fr/outils_eng.html
Packaged: 2014-09-05 16:31:51 UTC; nicolas
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-06 23:11:18

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New package trotter with initial version 0.5
Package: trotter
Type: Package
Title: Pseudo-Vectors Containing All Permutations and Combinations of Objects Taken from a Vector.
Version: 0.5
Date: 2014-09-05
Author: Richard Ambler
Maintainer: Richard Ambler
Description: Class definitions and constructors for pseudo-vectors containing all permutations and combinations of objects taken from a vector.
Depends: methods
License: GPL-3
Packaged: 2014-09-06 14:35:08 UTC; rambler
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-06 17:55:56

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New package sweidnumbr with initial version 0.1.1
Package: sweidnumbr
Type: Package
Title: Handling of Swedish Identity Numbers
Version: 0.1.1
Date: 2014-09-05
Author: Mans Magnusson
Maintainer: Mans Magnusson
Description: Structural handling of identity numbers used in the Swedish administration such as personal identity numbers ('personnummer') and organizational identity numbers ('organisationsnummer').
VignetteBuilder: knitr
URL: https://github.com/MansMeg/sweidnumbr/
BugReports: https://github.com/MansMeg/sweidnumbr/issues
License: BSD_2_clause + file LICENSE
Imports: lubridate
Suggests: testthat, knitr
Packaged: 2014-09-05 07:49:23 UTC; mans
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-06 17:30:54

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New package fMultivar with initial version 3011.78
Package: fMultivar
Title: Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
Date: 2014-09-04
Version: 3011.78
Author: Rmetrics Core Team, Diethelm Wuertz [aut], Tobias Setz [cre] Yohan Chalabi [ctb]
Maintainer: Tobias Setz
Description: Environment for teaching "Financial Engineering and Computational Finance"
Depends: R (>= 2.15.1), timeDate, timeSeries, fBasics
Imports: cubature, mvtnorm, sn
Suggests: methods, spatial, RUnit, tcltk, akima
Note: SEVERAL PARTS ARE STILL PRELIMINARY AND MAY BE CHANGED IN THE FUTURE. THIS TYPICALLY INCLUDES FUNCTION AND ARGUMENT NAMES, AS WELL AS DEFAULTS FOR ARGUMENTS AND RETURN VALUES.
LazyData: yes
License: GPL (>= 2)
URL: https://www.rmetrics.org
Packaged: 2014-09-06 13:26:08 UTC; Tobi
NeedsCompilation: no
X-CRAN-Comment: Archived on 2014-08-07 as check ERRORs were not fixed even after several reminders.
Repository: CRAN
Date/Publication: 2014-09-06 17:55:54

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Fri, 05 Sep 2014

New package bartMachine with initial version 1.0.4
Package: bartMachine
Type: Package
Title: Bayesian Additive Regression Trees
Version: 1.0.4
Date: 2014-5-7
Author: Adam Kapelner and Justin Bleich (R package), see COPYRIGHTS file for the authors of the java libraries
Maintainer: Adam Kapelner
Description: An advanced implementation of Bayesian Additive Regression Trees with expanded features for data analysis and visualization
License: GPL-3
Depends: R (>= 2.14.0), rJava (>= 0.8-4), car, randomForest, missForest
SystemRequirements: Java (>= 1.6.27)
Packaged: 2014-09-05 16:04:10 UTC; jbleich
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-05 22:15:49

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New package JAGUAR with initial version 1.0
Package: JAGUAR
Type: Package
Title: Joint Analysis of Genotype and Group-specific Variability Using a Novel Score Test Approach to Map eQTL
Version: 1.0
Date: 2014-08-28
Author: Chaitanya R. Acharya and Andrew S. Allen
Maintainer: Chaitanya Acharya
Depends: R (>= 3.0.0), Rcpp, plyr, lme4, doMC
LinkingTo: Rcpp
NeedsCompilation: yes
Description: Implements a 2 degree-of-freedom score test that measures 1) the overall shift in the gene expression due to genotype, and 2) group-specific changes in gene expression due to genotype (interaction term) in a mixed-effects model framework.
License: GPL-2
URL: https://groups.google.com/d/forum/jaguar-r-package
Packaged: 2014-09-05 06:04:13 UTC; Chaitanya
Repository: CRAN
Date/Publication: 2014-09-05 10:09:44

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Thu, 04 Sep 2014

New package GUILDS with initial version 1.0
Package: GUILDS
Type: Package
Title: Implementation of sampling formulas for the unified neutral model of biodiversity and biogeography, with or without guild structure.
Version: 1.0
Date: 2014-08-22
Author: Thijs Janzen
Maintainer: Thijs Janzen
Description: The GUILDS package combines a range of sampling formulas for the unified neutral model of biogeography and biodiversity. Alongside the sampling formulas, it includes methods to perform maximum likelihood optimization of the sampling formulas, methods to generate data given the neutral model, and methods to estimate the expected species abundance distribution. Sampling formulas included in the GUILDS package are the Etienne Sampling Formula (Etienne 2005), the guild sampling formula, where guilds are assumed to differ in dispersal ability (Janzen 2014), and the guilds sampling formula conditioned on guild size (Janzen 2014).
License: GPL-2
Depends: R (>= 3.0.2)
Imports: Rcpp (>= 0.11.0), pracma, subplex
LinkingTo: Rcpp
Packaged: 2014-09-04 14:21:25 UTC; p251362
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-05 00:53:26

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New package classyfire with initial version 0.1-0
Package: classyfire
Type: Package
Title: Robust multivariate classification using highly optimised SVM ensembles
Version: 0.1-0
Date: 2014-09-03
Author: Eleni Chatzimichali and Conrad Bessant
Maintainer: Eleni Chatzimichali
Description: A collection of functions for the creation and application of highly optimised, robustly evaluated ensembles of support vector machines (SVMs). The package takes care of training individual SVM classifiers using a fast parallel heuristic algorithm, and combines individual classifiers into ensembles. Robust metrics of classification performance are offered by bootstrap resampling and permutation testing.
License: GPL (>= 2)
Depends: R (>= 3.0.0), snowfall (>= 1.84-6), e1071 (>= 1.6-3), boot (>= 1.3-11), neldermead (>= 1.0-9)
Imports: ggplot2 (>= 1.0-0), optimbase (>= 1.0-9)
Packaged: 2014-09-04 19:01:20 UTC; elenachatzimichali
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-05 00:49:30

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New package subrank with initial version 0.8.5
Package: subrank
Type: Package
Title: Computes copula using ranks and subsampling
Version: 0.8.5
Date: 2014-05-09
Author: Jerome Collet
Maintainer: Jerome Collet
Description: essentially a discussion tool about estimation of copula using ranks and subsampling.
License: GPL (>= 3)
LazyLoad: yes
Packaged: 2014-09-04 20:25:46 UTC; collet
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-04 23:01:43

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New package cooptrees with initial version 1.0
Package: cooptrees
Type: Package
Version: 1.0
Date: 2014-09-01
Title: Cooperative aspects of optimal trees in weighted graphs
Author: Manuel Fontenla
Maintainer: Manuel Fontenla
Depends: R (>= 2.7.0), igraph (>= 0.7.1), optrees (>= 1.0)
Imports: gtools
Description: Computes several cooperative games and allocation rules associated with minimum cost spanning tree problems and minimum cost arborescence problems.
License: GPL-3
Packaged: 2014-09-03 13:34:25 UTC; Manuel
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-04 19:13:22

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New package mpcv with initial version 1.0
Package: mpcv
Type: Package
Title: Multivariate Process Capability Vector
Version: 1.0
Date: 2014-07-07
Author: Krzysztof Ciupke
Maintainer: Krzysztof Ciupke
Depends: lpSolve
Description: Multivariate process capability analysis using the multivariate process capability vector. Allows to analyze a multivariate process with both normally and non-normally distributed and also with dependent and independent quality characteristics.
License: GPL (>= 2.0)
Packaged: 2014-09-04 11:31:13 UTC; kciupke
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-04 14:39:33

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New package insuranceData with initial version 1.0
Package: insuranceData
Type: Package
Title: A Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance.
Version: 1.0
Date: 2014-09-04
Author: Alicja Wolny--Dominiak and Michal Trzesiok
Maintainer: Alicja Wolny--Dominiak
Description: Insurance datasets, which are often used in claims severity and claims frequency modelling. It helps testing new regression models in those problems, such as GLM, GLMM, HGLM, non-linear mixed models etc. Most of the data sets are applied in the project "Mixed models in ratemaking" supported by grant NN 111461540 from Polish National Science Center.
License: GPL-2
Packaged: 2014-09-04 10:38:28 UTC; Woali
Depends: R (>= 2.10)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-04 13:46:39

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New package pxweb with initial version 0.4
Package: pxweb
Type: Package
Title: R interface to the PX-Web/PC-Axis API
Version: 0.4
Date: 2014-09-03
Author: Mans Magnusson, Leo Lahti, Love Hansson
Maintainer: Mans Magnusson
Description: Generic interface for the PX-Web/PC-Axis API. The PX-Web/PC-Axis API is used by organizations such as Statistics Sweden and Statistics Finland to disseminate data. The R package can interact with all PX-Web/PC-Axis APIs to fetch information about the data hierarchy, extract metadata and extract and parse statistics to R data.frame format. PX-Web is a solution to disseminate PC-Axis data files in dynamic tables on the web. Since 2013 PX-Web contains an API to disseminate PC-Axis files. PX-Web/PC-Axis API information can be found at: http://www.scb.se/Grupp/OmSCB/API/API-description.pdf
VignetteBuilder: knitr
URL: https://github.com/rOpenGov/pxweb/
BugReports: https://github.com/rOpenGov/pxweb/issues
Imports: data.table, plyr, stringr, RJSONIO, httr
License: BSD_2_clause + file LICENSE
Suggests: testthat, ggplot2, knitr
Packaged: 2014-09-03 18:47:58 UTC; manma97
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-04 07:27:20

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Wed, 03 Sep 2014

New package MSIseq with initial version 0.99.1
Package: MSIseq
Maintainer: Mini Huang
License: GPL (>= 2)
Title: Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
Type: Package
Author: Mini Huang
Description: A decision tree classifier for detecting microsatellite instability (MSI) in somatic mutation data from whole exome sequencing. MSI is detected based on different mutation rates in all sites as well as in simple sequence repeats. This mechanism can also be applied to sequence data of targeted gene panels with shorter sequence length.
SystemRequirements: Java
Version: 0.99.1
biocViews: Classification, SomaticMutation, Sequencing
Depends: IRanges, RWeka, rJava, R.utils, R (>= 3.1.0)
Date: 2014-08-29
Packaged: 2014-08-29 07:03:52 UTC; minihuang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-03 07:51:10

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New package coreTDT with initial version 1.0
Package: coreTDT
Type: Package
Title: TDT for compound heterozygous and recessive models
Version: 1.0
Date: 2014-07-27
Author: Yu Jiang, Andrew S Allen
Maintainer: Yu Jiang
Description: Use to analysis case-parent trio sequencing studies. Test the compound heterozygous and recessive disease models
License: GPL-3
Packaged: 2014-09-02 21:19:49 UTC; yujiang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-03 07:20:55

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Tue, 02 Sep 2014

New package rsdmx with initial version 0.4-1
Package: rsdmx
Version: 0.4-1
Date: 2014-09-01
Title: Tools for reading SDMX data and metadata
Authors@R: c( person("Emmanuel", "Blondel", role = c("aut", "cre"), email = "emmanuel.blondel1@gmail.com"), person("Matthieu", "Stigler", role = c("ctb")))
Maintainer: Emmanuel Blondel
Depends: R (>= 2.15)
Imports: methods, XML (>= 3.96-1.1), RCurl, plyr
Suggests: testthat
Description: rsdmx provides a set of classes and methods to read data and metadata documents exchanged through the Statistical Data and Metadata Exchange (SDMX) framework. The package currently focuses on the SDMX XML standard format (SDMX-ML).
License: GPL (>= 2)
URL: https://github.com/opensdmx/rsdmx, http://www.sdmx.org
BugReports: https://github.com/opensdmx/rsdmx/issues
LazyLoad: yes
Collate: Class-SDMXSchema.R Class-SDMXType.R Class-SDMXStructureType.R Class-SDMXHeader.R Class-SDMX.R Class-SDMXGenericData.R Class-SDMXCompactData.R Class-SDMXMessageGroup.R Class-SDMXConcept.R Class-SDMXConceptScheme.R Class-SDMXConcepts.R Class-SDMXCode.R Class-SDMXCodelist.R Class-SDMXCodelists.R Class-SDMXDimension.R Class-SDMXTimeDimension.R Class-SDMXPrimaryMeasure.R Class-SDMXAttribute.R Class-SDMXComponents.R Class-SDMXDataStructure.R Class-SDMXDataStructures.R Class-SDMXDataStructureDefinition.R SDMXSchema-methods.R SDMXType-methods.R SDMXStructureType-methods.R SDMXHeader-methods.R SDMX-methods.R SDMXGenericData-methods.R SDMXCompactData-methods.R SDMXMessageGroup-methods.R SDMXConcept-methods.R SDMXConceptScheme-methods.R SDMXConcepts-methods.R SDMXCode-methods.R SDMXCodelist-methods.R SDMXCodelists-methods.R SDMXDimension-methods.R SDMXTimeDimension-methods.R SDMXPrimaryMeasure-methods.R SDMXAttribute-methods.R SDMXComponents-methods.R SDMXDataStructure-methods.R SDMXDataStructures-methods.R SDMXDataStructureDefinition-methods.R readSDMX.R
Packaged: 2014-09-01 21:45:12 UTC; Utilisateur
Author: Emmanuel Blondel [aut, cre], Matthieu Stigler [ctb]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-01 23:45:16

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New package nabor with initial version 0.4.2
Package: nabor
Type: Package
Title: Wraps libnabo, a fast K Nearest Neighbour library for low dimensions
Version: 0.4.2
Date: 2014-09-02
Author: Stephane Mangenat (for libnabo), Gregory Jefferis
Maintainer: Gregory Jefferis
Description: An R wrapper for libnabo, an exact or approximate k nearest neighbour library which is optimised for low dimensional spaces (e.g. 3D). libnabo has speed and space advantages over the ANN library wrapped by package RANN. nabor includes a knn function that is designed as a drop-in replacement for RANN::nn2. In addition, objects which include the k-d tree search structure can be returned to speed up repeated queries of the same set of target points.
License: BSD_3_clause + file LICENSE
Copyright: libnabo is copyright 2010--2011, Stephane Magnenat, ASL, ETHZ, Switzerland
URL: https://github.com/jefferis/nabor https://github.com/ethz-asl/libnabo
Depends: R (>= 3.0.2)
Imports: Rcpp (>= 0.11.2), methods
LinkingTo: Rcpp, RcppEigen (>= 0.3.2.2.0), BH (>= 1.54.0-4)
Suggests: testthat, RANN
Packaged: 2014-09-02 21:23:15 UTC; jefferis
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-03 01:30:42

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New package iBATCGH with initial version 1.0
Package: iBATCGH
Type: Package
Title: Integrative Bayesian Analysis of Transcriptomic and CGH data
Version: 1.0
Date: 2014-09-02
Author: Alberto Cassese
Maintainer: Alberto Cassese
Description: Bayesian integrative models of gene expression and comparative genomic hybridization data. The package provides inference on copy number variations and their association with gene expression
License: GPL-2
Imports: Rcpp (>= 0.11.2), msm
LinkingTo: Rcpp, RcppArmadillo
Packaged: 2014-09-02 21:48:30 UTC; ac43
Depends: R (>= 2.10)
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-03 01:16:38

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New package packrat with initial version 0.4.1
Package: packrat
Type: Package
Title: A dependency management system for projects and their R package dependencies
Version: 0.4.1
Date: 2014-09-02
Author: Kevin Ushey, Jonathan McPherson, Joe Cheng, JJ Allaire
Maintainer: Kevin Ushey
Description: Packrat is a tool for managing the R packages your project depends on in an isolated, portable, and reproducible way.
License: GPL-2
Depends: R (>= 3.0)
Imports: tools, utils
Suggests: testthat (>= 0.7), devtools
Enhances: knitr, BiocInstaller
URL: https://github.com/rstudio/packrat/
BugReports: https://github.com/rstudio/packrat/issues
Packaged: 2014-09-02 20:44:27 UTC; kevin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-03 01:01:17

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New package rcbalance with initial version 1.0
Package: rcbalance
Type: Package
Title: Large, sparse optimal matching with refined covariate balance
Version: 1.0
Date: 2014-08-08
Author: Samuel D. Pimentel
Maintainer: Samuel D. Pimentel
Description: Tools for large, sparse optimal matching of treated units and control units in observational studies. Provisions are made for refined covariate balance constraints, which include fine and near-fine balance as special cases. Matches are optimal in the sense that they are computed as solutions to network optimization problems rather than greedy algorithms.
Depends: R (>= 3.0.0), MASS, plyr
License: MIT + file LICENSE
Packaged: 2014-08-28 17:53:05 UTC; sdbpimentel
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-02 22:18:56

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New package rappdirs with initial version 0.3
Package: rappdirs
Type: Package
Title: Application directories: determine where to save data, caches and logs.
Version: 0.3
Authors@R: c( person("Hadley", "Wickham", email = "h.wickham@gmail.com", role = c("trl", "cre", "cph")), person("RStudio", role = "cph"), person("Sridhar", "Ratnakumar", role = "aut"), person("Trent", "Mick", role = "aut"), person("ActiveState", role = "cph", comment = "R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs"), person("Eddy", "Petrisor", role = "ctb"), person("Trevor", "Davis", role = c("trl", "aut")), person("Gabor", "Csardi", role = "ctb"), person("Gregory", "Jefferis", role = "ctb") )
Depends: R (>= 2.14), methods
Suggests: testthat, roxygen2
Description: An easy way to determine which directories on the users computer you should use to save data, caches and logs. A port of Python's Appdirs (\url{https://github.com/ActiveState/appdirs}) to R.
BugReports: https://github.com/hadley/rappdirs/issues
URL: https://github.com/hadley/rappdirs https://github.com/ActiveState/appdirs
License: MIT + file LICENSE
Copyright: Original python appdirs module copyright (c) 2010 ActiveState Software Inc. R port copyright Hadley Wickham, RStudio. See file LICENSE for details.
Packaged: 2014-09-02 15:34:08 UTC; hadley
Author: Hadley Wickham [trl, cre, cph], RStudio [cph], Sridhar Ratnakumar [aut], Trent Mick [aut], ActiveState [cph] (R/appdir.r, R/cache.r, R/data.r, R/log.r translated from appdirs), Eddy Petrisor [ctb], Trevor Davis [trl, aut], Gabor Csardi [ctb], Gregory Jefferis [ctb]
Maintainer: Hadley Wickham
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-02 19:44:02

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New package ica with initial version 1.0-0
Package: ica
Type: Package
Title: Independent Component Analysis
Version: 1.0-0
Date: 2014-09-02
Author: Nathaniel E. Helwig
Maintainer: Nathaniel E. Helwig
Description: Independent Component Analysis (ICA) using various algorithms: FastICA, Information-Maximization (Infomax), and Joint Approximate Diagonalization of Eigenmatrices (JADE).
License: GPL (>= 2)
Packaged: 2014-09-02 16:26:17 UTC; Nate
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-02 19:41:15

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New package Frames2 with initial version 0.0.3
Package: Frames2
Type: Package
Title: Estimation in dual frame surveys
Version: 0.0.3
Date: 2013-07-17
Author: Antonio Arcos , Maria del Mar Rueda , Maria Giovanna Ranalli and David Molina
Maintainer: David Molina
Description: Point and interval estimation in dual frame surveys. In contrast to classic sampling theory, where only one sampling frame is considered, dual frame methodology assumes that there are two frames available for sampling and that, overall, they cover the entire target population. Then, two probability samples (one from each frame) are drawn and information collected is suitably combined to get estimators of the parameter of interest.
License: GPL (>= 2)
Depends: sampling
Packaged: 2014-09-02 07:51:43 UTC; David
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-02 10:52:13

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New package optrees with initial version 1.0
Package: optrees
Type: Package
Title: Optimal Trees in Weighted Graphs
Version: 1.0
Date: 2014-09-01
Authors@R: c(person("Manuel", "Fontenla", role = c("aut", "cre"), email = "manu.fontenla@gmail.com"))
Author: Manuel Fontenla [aut, cre]
Maintainer: Manuel Fontenla
Depends: R (>= 2.7.0), igraph (>= 0.7.1)
Description: Finds optimal trees in weighted graphs. In particular, this package provides solving tools for minimum cost spanning tree problems, minimum cost arborescence problems, shortest path tree problems and minimum cut tree problem.
License: GPL-3
Packaged: 2014-09-01 23:16:39 UTC; Manuel
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-02 06:14:11

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Mon, 01 Sep 2014

New package xgboost with initial version 0.3-0
Package: xgboost
Type: Package
Title: eXtreme Gradient Boosting
Version: 0.3-0
Date: 2014-08-23
Author: Tianqi Chen , Tong He
Maintainer: Tong He
Description: This package is a R wrapper of xgboost, which is short for eXtreme Gradient Boosting. It is an efficient and scalable implementation of gradient boosting framework. The package includes efficient linear model solver and tree learning algorithm. The package can automatically do parallel computation with OpenMP, and it can be more than 10 times faster than existing gradient boosting packages such as gbm. It supports various objective functions, including regression, classification and ranking. The package is made to be extensible, so that user are also allowed to define there own objectives easily.
License: Apache License (== 2.0) | file LICENSE
URL: https://github.com/tqchen/xgboost
BugReports: https://github.com/tqchen/xgboost/issues
Depends: R (>= 2.0.2)
Imports: Matrix (>= 1.1-0), methods
Packaged: 2014-09-01 16:17:30 UTC; hetong
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-01 19:46:58

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New package descomponer with initial version 1.0
Package: descomponer
Type: Package
Title: Seasonal adjustment by frequency analysis
Version: 1.0
Date: 2014-08-07
Author: Francisco Parra
Maintainer: Francisco Parra
Description: Decompose a time series into seasonal, trend and irregular components using transformations to amplitude-frequency domain.
License: GPL (>= 2)
Depends: taRifx
Repository: CRAN
Packaged: 2014-09-01 16:44:26 UTC; PACO
NeedsCompilation: no
Date/Publication: 2014-09-01 19:46:56

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New package Tampo with initial version 1.0
Package: Tampo
Type: Package
Title: Tools for the Analysis of Microchemical Profiles from Otoliths
Version: 1.0
Date: 2014-08-28
Author: Matthias Vignon
Maintainer: Matthias Vignon
Description: Facilitates analyzing microchemical profiles (both mono- and multielemental composition) from fish otoliths (stones from the inner ear) using a recursive partitioning approach that can accommodate some form of user-specified constraints. It also allows extracting environmental histories from otolith based on typical elemental sequences generated using methods such as LA-ICPMS. Microchemical analysis is widely used in fisheries management and fisheries biology to identify stocks and characterize fish movements but the provided functions may be considered from the more general perspective of the chronological clustering of multivariate time series using piecewise constant regressions.
Depends: R(>= 3.0.2), mvpart
Suggests: boot, reshape, reshape2, ggplot2, grid, ggdendro, sets, mgcv
License: GPL (>= 2)
Packaged: 2014-09-01 11:08:35 UTC; Matthias
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-01 15:47:56

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New package pdR with initial version 1.1
Package: pdR
Type: Package
Title: panel data regression
Version: 1.1
Date: 2014-09-01
Author: Ho Tsung-wu
Maintainer: Ho Tsung-wu
Description: threshold regression in panel data
License: GPL (>= 2)
Packaged: 2014-09-01 08:00:01 UTC; shu
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-01 10:36:12

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Sun, 31 Aug 2014

New package lbfgs with initial version 1.2.1
Package: lbfgs
Type: Package
Title: Limited-memory BFGS Optimization
Version: 1.2.1
Date: 2014-07-08
Authors@R: c(person("Antonio", "Coppola", role = c("aut", "cre", "cph"), email = "acoppola@college.harvard.edu"), person("Brandon", "Stewart", role = c("aut", "cph")), person("Naoaki", "Okazaki", role = c("aut", "cph")), person("David", "Ardia", role = c("ctb", "cph")), person("Dirk", "Eddelbuettel", role = c("ctb", "cph")), person("Katharine", "Mullen", role = c("ctb", "cph")), person("Jorge", "Nocedal", role = c("ctb", "cph")))
Maintainer: Antonio Coppola
Description: A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implements both the Limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS) and the Orthant-Wise Quasi-Newton Limited-Memory (OWL-QN) optimization algorithms. The L-BFGS algorithm solves the problem of minimizing an objective, given its gradient, by iteratively computing approximations of the inverse Hessian matrix. The OWL-QN algorithm finds the optimum of an objective plus the L1-norm of the problem's parameters. The package offers a fast and memory-efficient implementation of these optimization routines, which is particularly suited for high-dimensional problems.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.2)
LinkingTo: Rcpp
Packaged: 2014-08-30 10:14:37 UTC; antonio12
Author: Antonio Coppola [aut, cre, cph], Brandon Stewart [aut, cph], Naoaki Okazaki [aut, cph], David Ardia [ctb, cph], Dirk Eddelbuettel [ctb, cph], Katharine Mullen [ctb, cph], Jorge Nocedal [ctb, cph]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-31 11:23:32

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New package SimuChemPC with initial version 1.3
Package: SimuChemPC
Type: Package
Title: Simulation process of 4 selection methods in predicting chemical potent compounds
Version: 1.3
Date: 2014-02-23
Author: Mohsen Ahmadi
Maintainer: Mohsen Ahmadi
Description: This package provides simulation process of 4 selection methods in predicting potent compounds
License: GPL-3
Depends: stats, graphics, grDevices, utils, rcdk, R (>= 2.13)
Packaged: 2014-02-24 22:53:35 UTC; M0H3N
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-02-25 07:44:36

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New package rcdklibs with initial version 1.5.8.4
Package: rcdklibs
Version: 1.5.8.4
Date: 2014-08-30
Title: rcdklib - CDK libraries packaged for R
Authors@R: c(person('Rajarshi', 'Guha', role=c('aut','cre'), email='rajarshi.guha@gmail.com'), person('CDK Project', '', role=c('ctb', 'cph'), comment='CDK Java library contained in multiple jar files'))
Maintainer: Rajarshi Guha
Depends: R (>= 2.0.0), rJava
License: LGPL
Description: This package provides the CDK libraries for use in the R environment. Given the size of the library itself, this package is not expected to change very frequently. To make use of the CDK within R, it is suggested that you use the rcdk package. Note that it is possible to directly interact with the CDK using rJava. However rcdk exposes functionality in a more idiomatic way. The CDK library itself is released as LGPL and the sources can be obtained from https://github.com/cdk/cdk
Packaged: 2014-08-30 17:36:06 UTC; guhar
Author: Rajarshi Guha [aut, cre], CDK Project [ctb, cph] (CDK Java library contained in multiple jar files)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-31 08:05:15

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New package rcdk with initial version 3.3.0
Package: rcdk
Version: 3.3.0
Date: 2014-08-30
Title: rcdk - Interface to the CDK Libraries
Authors@R: c(person('Rajarshi', 'Guha', role=c('aut','cre', 'cph'), email='rajarshi.guha@gmail.com'))
Maintainer: Rajarshi Guha
Depends: fingerprint
Imports: rJava, rcdklibs (>= 1.5.8), methods, png, iterators
Suggests: xtable, RUnit
License: LGPL
LazyLoad: yes
Description: This package allows the user to access functionality in the CDK, a Java framework for cheminformatics. This allows the user to load molecules, evaluate fingerprints, calculate molecular descriptors and so on. In addition the CDK API allows the user to view structures in 2D.
Packaged: 2014-08-30 17:36:06 UTC; guhar
Author: Rajarshi Guha [aut, cre, cph]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-31 08:05:15

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Sat, 30 Aug 2014

New package archivist with initial version 1.0
Package: archivist
Version: 1.0
Type: Package
Title: Tools for storing, restoring and searching for R objects
Authors@R: c( person("Przemyslaw", "Biecek", role = c("aut", "cre"), email = "przemyslaw.biecek@gmail.com"), person("Marcin", "Kosinski", role = c("aut"), email = "m.p.kosinski@gmail.com") )
Description: Data exploration and modelling is a process in which a lot of data artifacts are produced. Artifacts like: subsets, data aggregates, plots, statistical models, different versions of data sets and different versions of results. The more projects we work with the more artifacts are produced and the harder it is to manage these artifacts. Archivist helps to store and manage artifacts created in R. Archivist allows you to store selected artifacts as a binary files together with their metadata and relations. Archivist allows to share artifacts with others, either through shared folder or github. Archivist allows to look for already created artifacts by using it's class, name, date of the creation or other properties. Makes it easy to restore such artifacts. Archivist allows to check if new artifact is the exact copy that was produced some time ago. That might be useful either for testing or caching.
Repository: CRAN
License: GPL-2
LazyLoad: yes
LazyData: yes
Depends: R (>= 3.0.0), RSQLite, DBI, lubridate, jsonlite
Imports: RCurl, digest, httr
BugReports: https://github.com/pbiecek/archivist/issues
Packaged: 2014-08-30 18:30:21 UTC; pbiecek
Author: Przemyslaw Biecek [aut, cre], Marcin Kosinski [aut]
Maintainer: Przemyslaw Biecek
NeedsCompilation: no
Date/Publication: 2014-08-30 23:00:41

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New package apc with initial version 1.0
Package: apc
Type: Package
Title: Age-period-cohort analysis
Version: 1.0
Date: 2014-08-29
Author: Bent Nielsen
Maintainer: Bent Nielsen
Description: Functions for age-period-cohort analysis. The data can be organised in matrices indexed by age-cohort, age-period or cohort-period. The data can include dose and response or just doses. The statistical model is a generalized linear model (GLM) allowing for 3,2,1 or 0 of the age-period-cohort factors. The canonical parametrisation of Kuang, Nielsen and Nielsen (2008) is used. Thus, the analysis does not rely on ad hoc identification.
License: GPL-3
Packaged: 2014-08-29 23:41:27 UTC; Nielsen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-30 06:52:00

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Fri, 29 Aug 2014

New package lakemorpho with initial version 1.0
Package: lakemorpho
Type: Package
Title: Lake morphometry in R
Version: 1.0
Date: 2013-11-19
Authors@R: person(given = "Jeffrey W.", family = "Hollister", role = c("aut","cre"), email = "hollister.jeff@epa.gov")
URL: http://www.github.com/USEPA/lakemorpho
BugReports: https://www.github.com/USEPA/lakemorpho/issues
Maintainer: Jeffrey W. Hollister
License: CC0
Description: Lake morphometry metrics are used by limnologists to understand, among other things, the ecological processes in a lake. This package provides the tools to calculate a typical suite of these metrics from an input elevation model and lake polygon.
Depends: R (>= 2.10), maptools
Imports: rgdal, raster, rgeos, sp, geosphere
Author: Jeffrey W. Hollister [aut, cre]
Packaged: 2014-08-29 17:59:42 UTC; jhollist
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 20:29:33

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New package compendiumdb with initial version 0.1.0
Package: compendiumdb
Type: Package
Title: Tools for Storage and Retrieval of Gene Expession Data
Version: 0.1.0
Date: 2014-08-29
Author: Umesh Nandal , Perry D. Moerland
Maintainer: Umesh Nandal
Description: Package for the systematic collection, storage and retrieval of gene expression data via a MySQL database.
Depends: Biobase, RMySQL
Suggests: inSilicoDb, limma, hgu133a.db, GSVA, GSVAdata
SystemRequirements: Perl (>=5), MySQL (>=5.6)
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-08-29 17:20:10 UTC; ripley
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 19:20:50

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New package iosmooth with initial version 0.91
Package: iosmooth
Type: Package
Title: Functions for smoothing with infinite order flat-top kernels
Version: 0.91
Date: 2014-08-19
Author: Timothy L. McMurry, Dimitris N. Politis
Maintainer: Timothy L. McMurry
Description: Density, spectral density, and regression estimation using infinite order kernels.
License: GPL
Packaged: 2014-08-23 18:53:39 UTC; tmcmurry
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 15:06:26

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Thu, 28 Aug 2014

New package Eplot with initial version 1.0
Package: Eplot
Type: Package
Title: Plotting longitudinal series
Version: 1.0
Date: 2014-08-20
Author: Eran Raviv
Maintainer: Eran Raviv
Description: Aim: Adjust the graphical parameters to create nicer longitudinal series plots. The default set of graphical parameters is very general, and can be improved upon when we are interested in plotting data points observed over time. Functions facilitate plotting those kind of series, univariate plots, bivariate plots (with vertical axis on both left and right hand sides), multivariate plots and plots which allow to examine whether a new observation is 'unusual' via construction and visualization of prediction intervals around it.
License: GPL-2
Packaged: 2014-08-28 17:06:09 UTC; MP-User
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 01:16:24

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New package BIOM.utils with initial version 0.9
Package: BIOM.utils
Type: Package
Title: Utilities for the BIOM (Biological Observation Matrix) Format
Authors@R: person (c("Daniel", "T."), "Braithwaite", role=c("aut", "cre"), email="contact.dtb@gmail.com")
Version: 0.9
Depends: R (>= 3.0), utils
Imports:
Suggests: RJSONIO, MGRASTer
URL: https://github.com/braithwaite/BIOM.utils/
Date: 2014-08-22
Description: Provides utilities to facilitate import, export and computation with the BIOM (Biological Observation Matrix) format (http://biom-format.org).
License: BSD_2_clause + file LICENSE
Copyright: University of Chicago
LazyData: yes
Collate: source.R
Packaged: 2014-08-28 20:46:11 UTC; dan
Author: Daniel T. Braithwaite [aut, cre]
Maintainer: Daniel T. Braithwaite
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 01:18:59

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New package RcmdrPlugin.FactoMineR with initial version 1.5-0
Package: RcmdrPlugin.FactoMineR
Type: Package
Version: 1.5-0
Date: 2014-08-12
Title: Graphical User Interface for FactoMineR
Author: Francois Husson, Julie Josse, Sebastien Le
Maintainer: Francois Husson
Imports: Rcmdr (>= 2.0-0), tcltk
Depends: FactoMineR
Description: Rcmdr Plugin for the FactoMineR package
License: GPL (>= 2)
URL: http://factominer.free.fr, http://www.agrocampus-ouest.fr/math/
LazyLoad: no
Encoding: latin1
Packaged: 2014-08-28 19:10:16 UTC; husson
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-29 01:11:08

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New package bvarsv with initial version 1.0
Package: bvarsv
Type: Package
Title: Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters
Version: 1.0
Date: 2014-08-22
Author: Fabian Krueger
Maintainer: Fabian Krueger
Description: R/C++ implementation of the model proposed by Primiceri ("Time Varying Structural Vector Autoregressions and Monetary Policy", Review of Economic Studies, 2005), with a focus on generating posterior predictive distributions.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.0)
LinkingTo: Rcpp, RcppArmadillo
URL: https://sites.google.com/site/fk83research/code
Packaged: 2014-08-28 11:37:09 UTC; kruegefn
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-28 19:56:22

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New package NPBayesImpute with initial version 0.1
Package: NPBayesImpute
Type: Package
Title: Non-parametric Bayesian Multiple Imputation for Categorical Data
Version: 0.1
Date: 2014-04-05
Author: Quanli Wang, Daniel Manrique-Vallier, Jerome P. Reiter and Jingchen Hu
Maintainer: Quanli Wang
Description: These routines create multiple imputations of missing at random categorical data, with or without structural zeros. Imputations are based on Dirichlet process mixtures of multinomial distributions, which is a non-parametric Bayesian modeling approach that allows for flexible joint modeling.
License: GPL (>= 3)
Depends: methods, Rcpp (>= 0.10.2)
LinkingTo: Rcpp
RcppModules: clcm
Packaged: 2014-08-28 12:51:41 UTC; quanli
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-28 15:12:18

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New package parsedate with initial version 1.0.2
Package: parsedate
Title: Recognize and parse dates in various formats, including all ISO 8601 formats
Version: 1.0.2
Maintainer: Gabor Csardi
Author: Gabor Csardi, Linus Torvalds
Description: Parse dates automatically, without the need of specifying a format. Currently it includes the git date parser. It can also recognize and parse all ISO 8601 formats.
License: GPL-2
LazyData: true
Depends: methods
Imports: lubridate
Suggests: testthat
URL: https://github.com/gaborcsardi/parsedate
BugReports: https://github.com/gaborcsardi/parsedate/issues
Packaged: 2014-08-28 10:58:49 UTC; gaborcsardi
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-28 13:12:40

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Wed, 27 Aug 2014

New package trajectories with initial version 0.1-0
Package: trajectories
Version: 0.1-0
Date: 2014-08-27
Title: Classes and methods for trajectory data
Authors@R: c(person("Edzer", "Pebesma", role = c("cre", "aut"), email = "edzer.pebesma@uni-muenster.de"), person("Benedikt", "Klus", role = "aut"))
Depends: R (>= 2.14.0)
Imports: methods, lattice, sp (>= 1.0-14), spacetime (>= 1.0-0), rgdal, rgeos
Suggests: rgl, OpenStreetMap, RCurl, rjson, adehabitatLT
LazyData: no
Description: Classes and methods for trajectory data, with nested classes for individual trips, and collections for different entities. Methods include selection, generalization, aggregation, intersection, and plotting.
License: GPL (>= 2)
URL: http://github.com/edzer/trajectories
Collate: Class-Tracks.R Tracks-methods.R stplot.R
Packaged: 2014-08-27 21:05:41 UTC; edzer
Author: Edzer Pebesma [cre, aut], Benedikt Klus [aut]
Maintainer: Edzer Pebesma
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-28 00:05:09

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New package replicationInterval with initial version 0.1
Package: replicationInterval
Type: Package
Title: Replication Interval Functions
Version: 0.1
Date: 2014-08-27
Author: David Stanley
Maintainer: David Stanley
Description: A common problem faced by journal reviewers and authors is the question of whether the results of a replication study are consistent with the original published study. One solution to this problem is to examine the effect size from the published study and generate the range of effect sizes that could reasonably be obtained (due to random sampling) in a replication attempt (i.e., calculate a replication interval). If a replication effect size falls outside the replication interval then that value could not have occurred to due the effects of sampling error alone. Alternatively, if a replication effect size falls within the replication interval then the replication results could have reasonably occurred due to the effects of sampling error alone. This package has functions that calculate the replication interval for two different types of effect sizes (i.e., correlation, Cohen's d).
Imports: MBESS
License: Unlimited
Packaged: 2014-08-27 20:23:22 UTC; stanley
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 23:32:23

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New package dotenv with initial version 1.0
Package: dotenv
Title: Load environment variables from .env
Version: 1.0
Authors@R: "Gabor Csardi [aut, cre]"
Description: Load configuration from a .env file, that is in the current working directory, into environment variables.
License: MIT + file LICENSE
LazyData: true
Imports: magrittr, falsy
URL: https://github.com/gaborcsardi/dotenv
BugReports: https://github.com/gaborcsardi/dotenv/issues
Packaged: 2014-08-27 19:55:50 UTC; gaborcsardi
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 23:42:52

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New package lmeVarComp with initial version 1.0
Package: lmeVarComp
Type: Package
Title: Testing for a subset of variance components in linear mixed models
Version: 1.0
Date: 2014-08-27
Author: Yichi Zhang
Maintainer: Yichi Zhang
Description: Test zero variance components in linear mixed models and test additivity in nonparametric regression using the restricted likelihood ratio test and the generalized F-test.
License: GPL (>= 2)
Suggests: RLRsim, varComp
ByteCompile: yes
NeedsCompilation: yes
Packaged: 2014-08-27 17:33:32 UTC; yzhang52
Repository: CRAN
Date/Publication: 2014-08-27 21:17:18

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New package shopifyr with initial version 0.28
Package: shopifyr
Type: Package
Title: An R Interface to the Shopify API
Version: 0.28
Date: 2014-07-28
Author: Charlie Friedemann
Maintainer: Charlie Friedemann
Description: An interface to the API of the E-commerce service Shopify (http://docs.shopify.com/api)
URL: https://github.com/charliebone/shopifyr/
License: GPL-3
Depends: R (>= 3.0), RCurl
Imports: R6 (>= 2.0), RJSONIO
Collate: 'Announcement.R' 'ApplicationCharge.R' 'Article.R' 'Asset.R' 'Blog.R' 'CarrierService.R' 'Checkout.R' 'Collect.R' 'Comment.R' 'Country.R' 'CustomCollection.R' 'Customer.R' 'CustomerGroup.R' 'Event.R' 'Fulfillment.R' 'FulfillmentService.R' 'Location.R' 'MetaField.R' 'Order.R' 'OrderRisks.R' 'Page.R' 'Product.R' 'ProductImage.R' 'ProductVariant.R' 'Province.R' 'RecurringApplicationCharge.R' 'Redirect.R' 'Refund.R' 'ScriptTag.R' 'Shop.R' 'private.R' 'Webhook.R' 'Transaction.R' 'Theme.R' 'SmartCollection.R' 'ShopifyShop.R' 'shopfyr-package.R'
Packaged: 2014-08-27 15:24:00 UTC; Charlie
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 18:04:04

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New package falsy with initial version 1.0
Package: falsy
Title: Define truthy and falsy values
Version: 1.0
Authors@R: "Gabor Csardi [aut, cre]"
Description: A value is falsy if it is NULL, FALSE, the empty string, zero, or an empty vector or list. Other values are truthy. The new %&&% and %||% operators work with falsy and truthy values and can be used for concise conditional execution.
License: MIT + file LICENSE
Suggests: testthat
URL: https://github.com/gaborcsardi/falsy
BugReports: https://github.com/gaborcsardi/falsy/issues
Packaged: 2014-08-27 16:10:35 UTC; gaborcsardi
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 18:52:29

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New package decompr with initial version 1.1
Package: decompr
Type: Package
Title: Export Decomposition (Wang-Wei-Zhu and source)
Version: 1.1
Date: 2014-08-27
Author: Bastiaan Quast
Maintainer: Bastiaan Quast
Description: The R package 'decompr' implements two export decomposition algorithms. Firstly, the Wang-Wei-Zhu (Wang, Wei, and Zhu 2013) algorithm splits bilateral gross exports into 16 value added components. Secondly, the Source decomposition algorithm derives the value added origin of exports by country and industry, which is also based on Wang, Wei, and Zhu (2013).
Depends: R (>= 2.10)
License: GPL-3
Packaged: 2014-08-27 13:03:19 UTC; quast2
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 18:09:17

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New package Crossover with initial version 0.1-10
Package: Crossover
Type: Package
Title: Crossover Designs
Version: 0.1-10
Author: Kornelius Rohmeyer
Maintainer: Kornelius Rohmeyer
Description: Package Crossover provides different crossover designs from combinatorial or search algorithms as well as from literature and a GUI to access them.
Depends: R (>= 3.0.2), rJava (>= 0.8-3), CommonJavaJars (>= 1.0.5), JavaGD, ggplot2
Imports: MASS, crossdes (>= 1.1-1), xtable, methods, Matrix, multcomp, stats4, digest
Suggests: knitr, RUnit, nlme
SystemRequirements: Java (>= 5.0)
LinkingTo: Rcpp (>= 0.10.3), RcppArmadillo (>= 0.2.0)
License: GPL-2
VignetteBuilder: knitr
URL: https://github.com/kornl/Crossover/wiki
BugReports: https://github.com/kornl/Crossover/issues
Packaged: 2014-08-27 14:36:10 UTC; kornel
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-27 17:28:51

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New package statebins with initial version 1.0
Package: statebins
Type: Package
Title: statebins is an alternative to choropleth maps for USA States
Version: 1.0
Date: 2014-08-26
Author: Bob Rudis (@hrbrmstr)
Maintainer: Bob Rudis
Description: statebins is an alternative to choropleth maps for USA States and is based on work by the Washington Post graphics department in their report on "The states most threatened by trade". statebins preserves as much of the geographic placement of the states as possible but has the look and feel of a traditional heatmap. Functions are provided that allow for use of both a binned, discrete scale and continuous scale depending on what is needed for the underlying data.
URL: http://github.com/hrbrmstr/statebins
BugReports: https://github.com/hrbrmstr/statebins/issues
License: MIT + file LICENSE
Suggests: testthat
Depends: R (>= 3.0.0), ggplot2, grid, scales, gridExtra, RColorBrewer
Packaged: 2014-08-27 13:24:41 UTC; bob
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 16:35:46

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New package SelvarMix with initial version 1.0
Package: SelvarMix
Type: Package
Title: Regularization for variable selection in model-based clustering and discriminant analysis.
Version: 1.0
Date: 2014-04-03
Author: Mohammed Sedki, Gilles Celeux, Cathy Maugis-Rabusseau
Maintainer: Mohammed Sedki
Description: Regularization for variable selection in model-based clustering and discriminant analysis
License: GPL (>= 3)
Imports: Rcpp (>= 0.11.1), glasso, parallel, Rmixmod
LinkingTo: Rcpp, RcppArmadillo
Packaged: 2014-08-27 08:54:54 UTC; sedki
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-27 11:13:29

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