Thu, 27 Nov 2014

New package NormPsy with initial version 1.0.2
Package: NormPsy
Type: Package
Title: Normalisation of psychometric tests
Version: 1.0.2
Date: 2014-05-28
Author: Cecile Proust-Lima, Viviane Philipps
Maintainer: Cecile Proust-Lima
Description: This package provides functions for normalizing psychometric test scores. The normalization aims at correcting the metrological properties of the psychometric tests such as the ceiling and floor effects and the curvilinearity (unequal interval scaling). The package also provides functions to compute and plot predictions in the natural scale of the psychometric test from the estimates of a linear mixed model estimated on the normalized scores.
License: GPL
Depends: R (>= 2.9.0)
Imports: lcmm (>= 1.6.4)
Packaged: 2014-11-27 20:56:50 UTC; cecile
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-27 23:19:56

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New package EnsemblePCReg with initial version 0.6
Package: EnsemblePCReg
Type: Package
Title: Extensible Package for Principal-Component-Regression-based Integration of Base Learners
Version: 0.6
Date: 2014-11-25
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani
Description: This package extends the base classes and methods of EnsembleBase package for Principal-Components-Regression-based (PCR) integration of base learners. Default implementation uses cross-validation error to choose the optimal number of PC components for the final predictor. The package takes advantage of the file method provided in EnsembleBase package for writing estimation objects to disk in order to circumvent RAM bottleneck. Special save and load methods are provided to allow estimation objects to be saved to permanent files on disk, and to be loaded again into temporary files in a later R session. Users and developers can extend the package by extending the generic methods and classes provided in EnsembleBase package as well as this package.
License: GPL (>= 2)
Depends: EnsembleBase
Imports: parallel,methods
Packaged: 2014-11-26 22:37:10 UTC; amahani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-28 00:21:18

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New package cmprskQR with initial version 0.9.0
Package: cmprskQR
Version: 0.9.0
Date: 2014-11-26
Title: Analysis of Competing Risks Using Quantile Regressions
Author: Stephan Dlugosz, based on code from Limin Peng and Ruosha Li
Maintainer: Stephan Dlugosz
Depends: R (>= 2.13.0)
Imports: survival, quantreg
Description: Estimation, testing and regression modeling of subdistribution functions in competing risks using quantile regressions, as described in Peng and Fine JP (2009), Competing risks quantile regression, JASA, 104:1440-1453
License: GPL (>= 2)
URL: http://www.r-project.org
NeedsCompilation: yes
Repository: CRAN
Packaged: 2014-11-27 15:09:46 UTC; sdl
Date/Publication: 2014-11-27 18:38:56

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New package SSrat with initial version 1.0
Package: SSrat
Type: Package
Title: Two-dimensional sociometric status determination with rating scales
Version: 1.0
Date: 2014-09-09
Author: Hans Landsheer
Maintainer: Hans Landsheer
Description: SSRAT is a computer program for two-dimensional sociometric status determination with rating scales. For each person assessed, SSRAT computes probability distributions of the total scores for `sympathy' (S), `antipathy' (A), `social preference' (P) and `social impact' (I), and applies the criteria for sociometric status categorization.
License: GPL-2
Depends: plyr, sna
LazyData: yes
Packaged: 2014-11-27 14:18:47 UTC; lands101
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-27 16:04:43

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New package orderedLasso with initial version 1.7
Package: orderedLasso
Title: Ordered Lasso and Time-lag Sparse Regression
Version: 1.7
Author: Jerome Friedman, Xiaotong Suo and Robert Tibshirani
Description: Ordered lasso and time-lag sparse regression. Ordered Lasso fits a linear model and imposes an order constraint on the coefficients. It writes the coefficients as positive and negative parts, and requires positive parts and negative parts are non-increasing and positive. Time-Lag Lasso generalizes the ordered Lasso to a general data matrix with multiple predictors. For more details, see Suo, X.,Tibshirani, R., (2014) 'An Ordered Lasso and Sparse Time-lagged Regression'.
Maintainer: Xiaotong Suo
Depends: R (>= 3.0.0), Matrix
Imports: Iso,quadprog,ggplot2,reshape2
License: GPL-2
Packaged: 2014-11-27 07:18:25 UTC; xiaotong
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-27 08:32:37

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New package cqrReg with initial version 1.0
Package: cqrReg
Type: Package
Title: Quantile, Composite Quantile Regression and Regularized Versions
Version: 1.0
Date: 2014-11-07
Author: Jueyu Gao & Linglong Kong
Maintainer: Jueyu Gao
Description: Estimate quantile regression(QR) and composite quantile regression (cqr) and with adaptive lasso penalty using interior point (IP), majorize and minimize(MM), coordinate descent (CD), and alternating direction method of multipliers algorithms(ADMM).
License: GPL (>= 2)
Depends: Matrix,Rmosek
Imports: Rcpp (>= 0.10.0)
LinkingTo: Rcpp,RcppArmadillo
Packaged: 2014-11-27 00:30:38 UTC; billy
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-27 07:39:36

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Wed, 26 Nov 2014

New package rclinicaltrials with initial version 1.4
Package: rclinicaltrials
Type: Package
Title: Download Aggregate Trial Information and Results from ClinicalTrials.gov
Description: ClinicalTrials.gov is a registry and results database of publicly and privately supported clinical studies of human participants conducted around the world. Users can search for information about and results from those trials. This provides a set of functions to interact with the search and download features. Results are downloaded to temporary directories and returned as R objects.
Version: 1.4
Date: 2014-11-25
Author: Michael C Sachs
Maintainer: Michael C Sachs
Depends: R (>= 3.0.0)
License: MIT + file LICENSE
Imports: httr, XML, plyr
Suggests: devtools, knitr, roxygen2, testthat, ggplot2
VignetteBuilder: knitr
LazyData: true
Packaged: 2014-11-26 16:03:28 UTC; sachsmc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 18:37:28

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New package pointdensityP with initial version 0.1
Package: pointdensityP
Title: Point density for geospatial data
Version: 0.1
Author: "Paul Evangelista and Dave Beskow "
Maintainer: Paul Evangelista
Description: pointdensity returns a density count and the temporal average for every point in the original list. The dataframe returned includes four columns: lat, lon, count, and date_avg. The "lat" column is the original latitude data; the "lon" column is the original longitude data; the "count" is the density count of the number of points within a radius of radius*grid_size (the neighborhood); and the date_avg column includes the average date of each point in the neighborhood.
Depends: R (>= 3.1.1)
License: MIT + file LICENSE
LazyData: true
Packaged: 2014-11-26 15:07:34 UTC; Paul.Evangelista
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 18:39:20

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New package kpodclustr with initial version 1.0
Package: kpodclustr
Title: Method for Clustering Partially Observed Data
Version: 1.0
Authors@R: as.person(c( "Jocelyn T. Chi [aut, cre]", "Eric C. Chi [ctb]" ))
Description: The kpodclustr package implements the k-POD method for clustering partially observed data.
URL: http://jocelynchi.com/kpodclustr
Depends: R (>= 3.1.0), clues
License: MIT + file LICENSE
LazyData: true
Packaged: 2014-11-26 15:37:47 UTC; jocelyn
Author: Jocelyn T. Chi [aut, cre], Eric C. Chi [ctb]
Maintainer: Jocelyn T. Chi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 18:33:47

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New package EstSimPDMP with initial version 1.2
Package: EstSimPDMP
Type: Package
Title: Estimation and Simulation for PDMPs
Version: 1.2
Date: 2014-11-25
Author: Romain Azais
Maintainer: Romain Azais
Description: This package deals with the estimation of the jump rate for piecewise-deterministic Markov processes (PDMPs), from only one observation of the process within a long time. The main functions provide an estimate of this function. The state space may be discrete or continuous. The associated paper has been published in Scandinavian Journal of Statistics and is given in references. Other functions provide a method to simulate random variables from their (conditional) hazard rate, and then to simulate PDMPs.
License: GPL (>= 2)
Packaged: 2014-11-26 14:50:50 UTC; azais
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 18:53:19

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New package BayesianAnimalTracker with initial version 1.0
Package: BayesianAnimalTracker
Type: Package
Title: Bayesian Melding of GPS and DR Path for Animal Tracking
Version: 1.0
Date: 2014-11-07
Author: Yang (Seagle) Liu
Maintainer: Yang (Seagle) Liu
Suggests: TrackReconstruction
Description: Bayesian melding approach to combine the GPS observations and Dead-Reckoned path for an accurate animal's track, or equivalently, use the GPS observations to correct the Dead-Reckoned path. It can take the measurement errors in the GPS observations into account and provide uncertainty statement about the corrected path. The main calculation can be done by the BMAnimalTrack function.
License: GPL (>= 2)
Packaged: 2014-11-26 17:37:12 UTC; User
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 18:57:31

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New package timeseriesdb with initial version 0.1
Package: timeseriesdb
Title: Store and Organize Time Series in a Database
Description: An R package to store and organize time series and their multi-lingual meta information in a database. The timeseriesdb package suggests a simple yet powerful database structure to store a large amount of time series in a relational PostgreSQL database. The package provides an interface to the R user to create, update and delete time series.
Version: 0.1
Authors@R: 'Matthias Bannert [aut, cre]'
Depends: R (>= 3.0.0)
Suggests: RPostgreSQL
Imports: DBI
License: GPL-2
LazyData: true
Maintainer: 'Matthias Bannert'
Packaged: 2014-11-26 14:02:06 UTC; mbannert
Author: 'Matthias Bannert' [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 15:40:25

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New package SphericalK with initial version 1.0
Package: SphericalK
Type: Package
Title: Spherical K-function
Version: 1.0
Date: 2014-11-25
Author: Scott Robeson, Ao Li, Chunfeng Huang
Maintainer: Ao Li
Description: Spherical K-function for point-pattern analysis on the sphere
License: GPL (>= 2)
Packaged: 2014-11-26 02:06:14 UTC; Leon
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 08:06:54

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Tue, 25 Nov 2014

New package lucid with initial version 1.0
Package: lucid
Version: 1.0
Date: 2014-11-24
Title: Lucid Printing of Floating Point Numbers
Author: Kevin Wright
Maintainer: Kevin Wright
Description: Print vectors (and data frames) of floating point numbers using a non-scientific format optimized for human readers. Vectors of numbers are rounded using significant digits, aligned at the decimal point, and all zeros trailing the decimal point are dropped.
LazyData: yes
License: GPL-2
URL: https://github.com/kwstat/lucid
BugReports: https://github.com/kwstat/lucid/issues
VignetteBuilder: knitr
Imports: nlme
Suggests: knitr, lattice, lme4
Packaged: 2014-11-25 22:00:33 UTC; wrightkevi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 00:52:34

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New package GMDH with initial version 1.0
Package: GMDH
Type: Package
Title: Predicting and Forecasting Time Series via GMDH-Type Neural Network Algorithms
Version: 1.0
Date: 2014-11-25
Depends: MASS, stats
Author: Osman Dag, Ceylan Yozgatligil
Maintainer: Osman Dag
Description: Group method of data handling (GMDH) - type neural network algorithm is the heuristic self-organization method for modelling the complex systems. In this package, GMDH-type neural network algorithms are applied to predict and forecast a univariate time series.
License: GPL (>= 2)
Packaged: 2014-11-25 19:14:40 UTC; osmndg
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 00:48:49

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New package EnsembleCV with initial version 0.7
Package: EnsembleCV
Type: Package
Title: Extensible Package for Cross-Validation-Based Integration of Base Learners
Version: 0.7
Date: 2014-11-17
Author: Mansour T.A. Sharabiani, Alireza S. Mahani
Maintainer: Alireza S. Mahani
Description: This package extends the base classes and methods of EnsembleBase package for cross-validation-based integration of base learners. Default implementation calculates average of repeated CV errors, and selects the base learner / configuration with minimum average error. The package takes advantage of the file method provided in EnsembleBase package for writing estimation objects to disk in order to circumvent RAM bottleneck. Special save and load methods are provided to allow estimation objects to be saved to permanent files on disk, and to be loaded again into temporary files in a later R session. The package can be extended, e.g. by adding variants of the current implementation.
License: GPL (>= 2)
Depends: EnsembleBase
Imports: parallel,methods
Packaged: 2014-11-25 21:39:34 UTC; amahani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-26 00:59:47

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New package gridGraphics with initial version 0.1-1
Package: gridGraphics
Title: Redraw Base Graphics Using grid Graphics
Version: 0.1-1
Authors@R: person("Paul", "Murrell", role = c("cre", "aut"), email = "paul@stat.auckland.ac.nz")
Description: Functions to convert a page of plots drawn with the graphics package into identical output drawn with the grid package. The result looks like the original graphics-based plot, but consists of grid grobs and viewports that can then be manipulated with grid functions (e.g., edit grobs and revisit viewports).
Depends: grid, graphics
Suggests: KernSmooth
SystemRequirements: ImageMagick (for testing)
License: GPL (>= 2)
URL: https://github.com/pmur002/gridgraphics
Packaged: 2014-11-25 20:01:49 UTC; EC\pmur002
Author: Paul Murrell [cre, aut]
Maintainer: Paul Murrell
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 22:24:13

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New package KODAMA with initial version 0.0.1
Package: KODAMA
Version: 0.0.1
Date: 2013-11-20
Author: Stefano Cacciatore, Claudio Luchinat, Leonardo Tenori
Maintainer: Stefano Cacciatore
Title: Knowledge discovery by accuracy maximization
Description: KODAMA (KnOwledge Discovery by Accuracy MAximization) is an unsupervised and semisupervised learning algorithm that performs feature extraction from noisy and high-dimensional data.
Depends: R (>= 2.10.0),e1071,plsgenomics,class
Suggests: rgl,
SuggestsNote: No suggestions
License: GPL (>= 2)
Packaged: 2014-11-25 15:41:39 UTC; Stefano
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 18:05:43

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New package empiricalFDR.DESeq2 with initial version 1.0
Package: empiricalFDR.DESeq2
Type: Package
Title: Simulation-based False Discovery Rate in RNA-seq
Version: 1.0
Date: 2014-11-25
Author: Mikhail V. Matz
Maintainer: Mikhail V. Matz
Description: Auxiliary functions for the DESeq2 package to simulate read counts according to the null hypothesis (i.e., with empirical sample size factors, per-gene total counts and dispersions, but without effects of predictor variables) and to compute the empirical false discovery rate.
License: GPL-3
Depends: DESeq2,GenomicRanges
Packaged: 2014-11-25 15:48:11 UTC; c-monster
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 18:03:34

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New package maboost with initial version 1.0-0
Package: maboost
Version: 1.0-0
Date: 2014-11-01
Title: Binary and Multiclass Boosting Algorithms
Author: Tofigh Naghibi
Depends: R(>= 2.10),rpart,C50
Description: Performs binary and multiclass boosting in maximum-margin, sparse, smooth and normal settings as described in "A Boosting Framework on Grounds of Online Learning" by T. Naghibi and B. Pfister, (2014). For further information regarding the algorithms, please refer to http://arxiv.org/abs/1409.7202
Maintainer: Tofigh Naghibi
License: GPL (>= 2)
Packaged: 2014-11-25 15:05:38 UTC; tofighn
Repository: CRAN
Date/Publication: 2014-11-25 17:03:41
Collate: 'maboost-package.r' 'maboost.R' 'maboost.default.R' 'maboost.formula.R' 'maboost.machine.bin.R' 'maboost.machine.multi.R' 'predict.maboost.R' 'print.maboost.R' 'projsplx.R' 'projsplx_k.R' 'summary.maboost.R' 'update.maboost.R' 'varplot.maboost.R'
NeedsCompilation: no

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New package IRTShiny with initial version 1.0
Package: IRTShiny
Type: Package
Title: Item Response Theory via Shiny
Version: 1.0
Date: 2014-11-24
Author: William Kyle Hamilton , Atsushi Mizumoto
Maintainer: William Kyle Hamilton
Description: Interactive shiny application for running Item Response Theory analysis.
License: GPL-3
Imports: shiny, shinyAce, beeswarm, CTT, ltm, parallel,
Suggests: psych
LazyData: true
Packaged: 2014-11-25 08:29:49 UTC; Kyle
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 11:33:45

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New package USAboundaries with initial version 0.1
Package: USAboundaries
Type: Package
Title: Historical boundaries of the United States of America, 1629-2000
Date: 2014
Version: 0.1
Authors@R: c(person("Lincoln", "Mullen", email = "lincoln@lincolnmullen.com", role = c("aut", "cre")), person("Dr. William M. Scholl Center for American History and Culture, The Newberry Library", role = c("cph")))
Description: This package provides spatial objects with the boundaries of states or counties in the United States of America from 1629 to 2000. It provides data from the Atlas of Historical County Boundaries.
License: CC BY-NC-SA 4.0
LazyData: true
LazyDataCompression: xz
URL: https://github.com/ropensci/USAboundaries
BugReports: https://github.com/ropensci/USAboundaries/issues
Depends: R (>= 3.1.1),
Imports: assertthat (>= 0.1), dplyr (>= 0.3.0.1), ggplot2 (>= 1.0.0), lubridate (>= 1.3.3), maptools (>= 0.8-30), rgeos (>= 0.3-8), sp (>= 1.0.15)
Suggests: knitr, mapproj, testthat (>= 0.9.1)
VignetteBuilder: knitr
Packaged: 2014-11-24 18:25:13 UTC; lmullen
Author: Lincoln Mullen [aut, cre], Dr. William M. Scholl Center for American History and Culture, The Newberry Library [cph]
Maintainer: Lincoln Mullen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 09:42:09

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New package musicNMR with initial version 0.0.2
Package: musicNMR
Version: 0.0.2
Date: 2013-11-21
Author: Stefano Cacciatore, Edoardo Saccenti, Mario Piccioli
Maintainer: Stefano Cacciatore
Title: Conversion of Nuclear Magnetic Resonance spectrum in audio file
Description: This package is a collection of function for converting and modifying mono dimensional nuclear magnetic resonance spectra.
Depends: R (>= 2.10.0), seewave
Suggests: plsgenomics
SuggestsNote: No suggestions
License: GPL (>= 2)
Packaged: 2014-11-25 06:58:47 UTC; Stefano
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 09:50:06

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New package cjoint with initial version 1.0.2
Package: cjoint
Version: 1.0.2
Date: 2014-10-18
Title: AMCE Estimator for Conjoint Experiments
Author: Anton Strezhnev, Jens Hainmueller, Daniel Hopkins, Teppei Yamamoto
Maintainer: Anton Strezhnev
Depends: R (>= 2.0.0), sandwich, lmtest, ggplot2
Description: An R implementation of the Average Marginal Component-specific Effects (AMCE) estimator presented in Hainmueller, J., Hopkins, D., and Yamamoto T. (2014) Causal Inference in Conjoint Analysis: Understanding Multi-Dimensional Choices via Stated Preference Experiments. Political Analysis 22(1):1-30.
License: GPL (>= 2)
Packaged: 2014-11-25 07:53:08 UTC; anton
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 09:24:01

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New package mads with initial version 0.1.0
Package: mads
Depends: mrds
Suggests: testthat
Type: Package
Title: Multi-Analysis Distance Sampling.
Version: 0.1.0
Date: 2014-11-27
Author: Laura Marshall
Maintainer: Laura Marshall
Description: Performs distance sampling analyses on a number of species accounting for unidentified sightings, model uncertainty and covariate uncertainty.
License: GPL (>= 2)
Packaged: 2014-11-25 02:50:52 UTC; laura
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-25 09:01:38

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New package iccbeta with initial version 1.0
Package: iccbeta
Type: Package
Title: Multilevel model intraclass correlation for slope heterogeneity
Version: 1.0
Date: 2014-11-21
Authors@R: c(person("Steven Andrew", "Culpepper", role = c("aut", "cph","cre"), email = "sculpepp@illinois.edu"),person("Herman", "Aguinis", role = c("aut", "cph"), email = "haguinis@indiana.edu"))
Maintainer: Steven Andrew Culpepper
Description: A function and vignettes for computing an intraclass correlation described in Aguinis & Culpepper (in press). iccbeta quantifies the share of variance in a dependent variable that is attributed to group heterogeneity in slopes.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.1)
LinkingTo: Rcpp (>= 0.11.1), RcppArmadillo
Depends: R (>= 3.0.2), lme4
Packaged: 2014-11-25 02:21:38 UTC; sculpepp
Author: Steven Andrew Culpepper [aut, cph, cre], Herman Aguinis [aut, cph]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-25 08:52:58

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New package GCPM with initial version 1.1
Package: GCPM
Type: Package
Title: Generalized Credit Portfolio Model
Version: 1.1
Date: 2014-11-24
Author: Kevin Jakob
Maintainer: Kevin Jakob
Description: The package helps to analyze the default risk of credit portfolios. Commonly known models, like CreditRisk+ or the CreditMetrics model are implemented in their very basic settings. The portfolio loss distribution can be achieved either by simulation or analytically in case of the classic CreditRisk+ model. Models are only implemented to respect losses caused by defaults, i.e. migration risk is not included. The package structure is kept flexible especially with respect to distributional assumptions in order to quantify the sensitivity of risk figures with respect to several assumptions. Therefore the package can be used to determine the credit risk of a given portfolio as well as to quantify model sensitivities.
License: GPL-2
Imports: Rcpp (>= 0.11.2), methods, RcppProgress(>= 0.1)
LinkingTo: Rcpp, RcppProgress
Packaged: 2014-11-24 18:46:01 UTC; Kevin_Jakob
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-25 08:40:13

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Mon, 24 Nov 2014

New package EGRET with initial version 2.0.1
Package: EGRET
Type: Package
Title: Exploration and Graphics for RivEr Trends (EGRET)
Version: 2.0.1
Date: 2014-11-24
Authors@R: c( person("Robert", "Hirsch", role = c("aut"), email = "rhirsch@usgs.gov"), person("Laura", "DeCicco", role = c("aut","cre"), email = "ldecicco@usgs.gov"))
Description: EGRET includes statistics and graphics for streamflow history, water quality trends, and the statistical modeling algorithm Weighted Regressions on Time, Discharge, and Season (WRTDS).
License: CC0
Depends: R (>= 3.0)
Imports: dataRetrieval, survival, fields, stats, lubridate, methods
Suggests: xtable, knitr, extrafont
LazyLoad: yes
LazyData: yes
VignetteBuilder: knitr
BuildVignettes: true
URL: http://pubs.usgs.gov/tm/04/a10/, https://github.com/USGS-R/EGRET/wiki
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at http://www.usgs.gov/visual-id/credit_usgs.html#copyright
Packaged: 2014-11-24 15:17:25 UTC; ldecicco
Author: Robert Hirsch [aut], Laura DeCicco [aut, cre]
Maintainer: Laura DeCicco
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-24 18:31:16

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New package choiceDes with initial version 0.9-1
Package: choiceDes
Type: Package
Title: Design Functions for Choice Studies
Version: 0.9-1
Date: 2014-11-24
Authors@R: person("Jack", "Horne", role=c("aut", "cre"), email="jack@jackhorne.net")
Maintainer: Jack Horne
Description: This package consists of functions to design DCMs and other types of choice studies (including MaxDiff and other tradeoffs)
License: GPL (>= 2)
Depends: R (>= 2.15.2), AlgDesign
Packaged: 2014-11-24 16:12:17 UTC; Jack
Author: Jack Horne [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-24 18:38:56

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New package wux with initial version 1.2-2
Package: wux
Type: Package
Title: Wegener Center Climate Uncertainty Explorer
Version: 1.2-2
Date: 2014-10-20
Author: Thomas Mendlik, Georg Heinrich, Andreas Gobiet and Armin Leuprecht
Maintainer: Thomas Mendlik
Depends: sp, ncdf, reshape, abind, fields
Imports: rgdal, rgeos, class, stringr, Hmisc, gdata, corpcor
Suggests: lattice
Description: Analysis of climate model output uncertainties for specified geographical regions.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Packaged: 2014-11-24 08:28:33 UTC; tommaschku
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-24 10:36:38

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Sun, 23 Nov 2014

New package RCryptsy with initial version 0.2
Package: RCryptsy
Type: Package
Title: Access to Cryptsy Crypto-Currency Exchange Public Information API via R
Version: 0.2
Date: 2014-11-19
Author: William Kyle Hamilton
Maintainer: William Kyle Hamilton
Description: Basic Public API for the Crypto-Currency exchange Cryptsy
Depends: R (>= 3.0.3), RJSONIO, RCurl
License: GPL-3
URL: https://github.com/kylehamilton/RCryptsy
BugReports: https://github.com/kylehamilton/RCryptsy/issues
Packaged: 2014-11-22 13:33:36 UTC; Kyle
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-23 23:41:18

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New package NHMSAR with initial version 1.0
Package: NHMSAR
Type: Package
Title: Non-Homogeneous Markov Switching Autoregressive Models: Fitting, Simulating, Validating.
Version: 1.0
Date: 2014-08-11
Author: Valerie Monbet
Maintainer: Valerie Monbet
Description: Calibration, simulation, validation of (non-)homogeneous Markov switching autoregressive models with Gaussian or von Mises innovations.
License: GPL
Depends: R (>= 2.10), ucminf
Packaged: 2014-11-23 12:24:14 UTC; monbet
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-23 23:32:31

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New package jiebaR with initial version 0.2
Package: jiebaR
Type: Package
Title: Chinese Text Segmentation
Description: Chinese text segmentation, keyword extraction and speech tagging For R.
Version: 0.2
Date: 2014-11-23
Author: Qin Wenfeng, and the authors of CppJieba for the included version of CppJieba
Maintainer: Qin Wenfeng
License: MIT + file LICENSE
Depends: R (>= 3.1)
Imports: Rcpp,methods
LinkingTo: Rcpp
Suggests: testthat, knitr
URL: https://github.com/qinwf/jiebaR/
BugReports: https://github.com/qinwf/jiebaR/issues
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2014-11-23 10:36:47 UTC; outwen
Repository: CRAN
Date/Publication: 2014-11-23 12:47:46

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New package matchingMarkets with initial version 0.1-2
Package: matchingMarkets
Version: 0.1-2
Depends: R (>= 2.15.2)
Imports: Rcpp (>= 0.11.2), lpSolve (>= 5.6.6), partitions
LinkingTo: Rcpp, RcppArmadillo
Date: 2014-08-14
Title: An R package for the analysis of stable matchings
Author: Thilo Klein
Maintainer: Thilo Klein
Description: This package implements a structural estimator to correct for the sample selection bias from observed outcomes in matching markets. It also contains R code for matching algorithms such as the deferred-acceptance algorithm for college admissions, the top-trading-cycles algorithm for house allocation and a partitioning linear program for the roommates problem.
URL: https://github.com/thiloklein/matchingMarkets
License: GPL (>= 2) | file LICENSE
Repository: CRAN
Repository/R-Forge/Project: matchingmarkets
Repository/R-Forge/Revision: 16
Repository/R-Forge/DateTimeStamp: 2014-11-22 23:10:11
Date/Publication: 2014-11-23 09:35:22
Packaged: 2014-11-22 23:25:30 UTC; rforge
NeedsCompilation: yes

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New package broom with initial version 0.3.4
Package: broom
Type: Package
Title: Convert Statistical Analysis Objects Into Tidy Data Frames
Version: 0.3.4
Date: 2014-09-11
Authors@R: as.person(c( "David Robinson [aut, cre]", "Matthieu Gomez [ctb]", "Boris Demeshev [ctb]", "Hadley Wickham [ctb]" ))
Maintainer: David Robinson
Description: Convert statistical analysis objects from R into tidy data frames, so that they can more easily be combined, reshaped and otherwise processed with tools like dplyr, tidyr and ggplot2. The package provides three S3 generics: tidy, which summarizes a model's statistical findings such as coefficients of a regression; augment, which adds columns to the original data such as predictions, residuals and cluster assignments; and glance, which provides a one-row summary of model-level statistics.
Imports: plyr, dplyr, tidyr, psych
Suggests: knitr, survival, glmnet, lfe, Lahman, MASS, sp, maps, maptools, multcomp, testthat, lme4, zoo, ggplot2
URL: http://github.com/dgrtwo/broom
BugReports: http://github.com/dgrtwo/broom/issues
VignetteBuilder: knitr
License: MIT + file LICENSE
Packaged: 2014-11-23 06:37:25 UTC; dgrtwo
Author: David Robinson [aut, cre], Matthieu Gomez [ctb], Boris Demeshev [ctb], Hadley Wickham [ctb]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-23 09:23:10

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Sat, 22 Nov 2014

New package MAVIS with initial version 0.2
Package: MAVIS
Type: Package
Title: Meta Analysis via Shiny
Version: 0.2
Date: 2014-11-21
Author: William Kyle Hamilton , Atsushi Mizumoto
Maintainer: William Kyle Hamilton
Description: Interactive shiny application for running a meta-analysis, provides support for both random effects and fixed effects models.
License: GPL-3
Imports: shiny, shinyAce, metafor, MAd, MAc, quantreg, ggplot2
LazyData: true
Packaged: 2014-11-22 13:29:53 UTC; Kyle
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-22 19:06:45

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New package MATA with initial version 0.1
Package: MATA
Title: Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval
Version: 0.1
Authors@R: person('Daniel', 'Turek', email='dturek@maths.otago.ac.nz', role=c('aut','cre'))
Description: Provides a function for calculating the Model-Averaged Tail Area Wald (MATA-Wald) confidence interval, which is generated from single-model estimators and AIC model weights
Depends: R (>= 3.1.1)
License: GPL-2
LazyData: true
Packaged: 2014-11-22 01:27:25 UTC; dturek
Author: Daniel Turek [aut, cre]
Maintainer: Daniel Turek
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-22 08:23:28

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New package EnsembleBase with initial version 0.7
Package: EnsembleBase
Type: Package
Title: Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling
Version: 0.7
Date: 2014-11-17
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani
Description: Extensible S4 classes and methods for batch training of regression and classification algorithms such as Random Forest, Gradient Boosting Machine, Neural Network, Support Vector Machines, and K-Nearest Neighbors. These algorithms constitute a set of 'base learners', which can subsequently be combined together to form ensemble predictions. This package provides cross-validation wrappers to allow for downstream application of ensemble integration techniques, including best-error selection. All base learner estimation objects are retained, allowing for repeated prediction calls without the need for re-training. For large problems, an option is provided to save estimation objects to disk, along with prediction methods that utilize these objects. This allows users to train and predict with large ensembles of base learners without being constrained by system RAM.
License: GPL (>= 2)
Depends: kknn,methods
Imports: gbm,nnet,e1071,randomForest,doParallel,foreach
Packaged: 2014-11-22 01:26:03 UTC; amahani
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-22 08:23:23

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Fri, 21 Nov 2014

New package sisus with initial version 3.9-13
Package: sisus
Version: 3.9-13
Date: 2014-08-26
Title: SISUS: Stable Isotope Sourcing using Sampling
Authors@R: person(given = c("Erik", "Barry"), family = "Erhardt", email = "erike@stat.unm.edu", role = c("aut", "cre"))
Author: Erik Barry Erhardt [aut, cre]
Maintainer: Erik Barry Erhardt
Description: SISUS for source partitioning using stable isotopes. SISUS reads in a specific Excel-like workbook and performs an IsoSource-type analysis by returning a sample of feasible solutions to p in the non-over constrained linear systems, b=Ap. Edit \file{sisus_*_template.xls} and input data values and run parameters. Run \code{\link{sisus.run}(filename)}. See output in current working directory.
Depends: R (>= 3.0.0)
Imports: MASS, RColorBrewer, coda, gdata, gtools, moments, polyapost, rcdd, stats
Suggests:
License: GPL (>= 2)
LazyLoad: yes
URL: http://StatAcumen.com/sisus
Packaged: 2014-11-21 04:19:50 UTC; erik
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-22 02:13:02

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New package rvest with initial version 0.1.0
Package: rvest
Title: Easily Harvest (Scrape) Web Pages
Version: 0.1.0
Authors@R: 'Hadley Wickham [aut,cre]'
Description: Wrappers around the XML and httr packages to make it easy to download, then manipulation html pages.
Depends: R (>= 3.0.1)
Imports: httr (>= 0.5), XML, selectr, magrittr
Suggests: testthat, knitr, png, stringi (>= 0.3.1)
License: GPL-3
LazyData: true
VignetteBuilder: knitr
Packaged: 2014-11-21 19:03:34 UTC; hadley
Author: 'Hadley Wickham' [aut, cre]
Maintainer: 'Hadley Wickham'
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-22 01:26:00

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New package proteomics with initial version 0.2
Package: proteomics
Version: 0.2
Date: 2014-11
Title: Statistical Analysis of High Throughput Proteomics Data
Description: Provides methods for making inference in isobaric labelled LC-MS/MS experiments, i.e. iTRAQ experiments. It provides a function that reasonably parses a CSV-export from Proteome Discoverer(TM) into a data frame that can be easily handled in R. Functions and methods are provided for quality control, filtering, norming, and the calculation of response variables for further analysis. The merging of multiple iTRAQ experiments with respect to a reference is also covered.
Author: Thomas W. D. Möbius
Maintainer: Thomas W. D. Möbius
URL: http://00tau.github.io/proteomics-in-r/
License: GPL-3
Imports: plyr, reshape2, ggplot2, foreach
LazyData: yes
ByteCompile: yes
Encoding: UTF-8
Collate: 'data-00-selection-from-PD.r' 'data-01-consolidation.r' 'data-02-merging.r' 'data-03-analysis.r' 'zzz.R'
Packaged: 2014-11-21 13:33:54 UTC; thomas.moebius
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-22 01:30:39

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New package PASWR2 with initial version 1.0
Package: PASWR2
Type: Package
Title: Probability and Statistics with R, Second Edition
Version: 1.0
Date: 2014-11-21
Author: Alan T. Arnholt
Maintainer: Alan T. Arnholt
Description: Functions and data sets for the text Probability and Statistics with R, Second Edition
Depends: R (>= 2.10), ggplot2, lattice
Imports: e1071, grid
LazyData: TRUE
License: GPL-2
Packaged: 2014-11-21 20:58:17 UTC; alan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-22 02:02:01

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New package rfUtilities with initial version 1.0
Package: rfUtilities
Title: Random Forests model selection and performance evaluation
Version: 1.0
Date: 2014-11-09
Authors@R: as.person(c(person(family="Evans", given="Jeffrey S.", email="jeffrey_evans@tnc.org", role = c("aut", "cre")), person(family="Murphy", given="Melanie A.", role = c("aut"))))
Description: Utilities for Random Forest model selection, class balance correction, significance test, cross validation and probability partial plots.
Depends: R (>= 3.1.2), randomForest (>= 4.6-10), e1071 (>= 1.6-4)
Maintainer: Jeffrey S. Evans
License: GPL-3
URL: http://evansmurphy.wix.com/evansspatial
NeedsCompilation: no
Repository: CRAN
LazyData: true
Packaged: 2014-11-21 00:40:47 UTC; jevans
Author: Jeffrey S. Evans [aut, cre], Melanie A. Murphy [aut]
Date/Publication: 2014-11-21 07:56:12

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New package Ramd with initial version 0.2
Package: Ramd
Title: Tools For Managing File/function Dependencies In R
Description: A "define" function is provided that allows for inclusion of external scripts without polluting the global namespace and makes it easier to write modular R code.
Version: 0.2
Author: Robert Krzyzanowski
Maintainer: Robert Krzyzanowski
Depends: R (>= 3.0.0)
Suggests: testthat, testthatsomemore
License: GPL (>= 2)
LazyData: true
Packaged: 2014-11-21 00:25:59 UTC; robertk
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-21 07:56:08

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New package interpretR with initial version 0.1.0
Package: interpretR
Type: Package
Title: Binary Classifier Interpretation functions: Partial Dependence Plots
Version: 0.1.0
Date: 2014-11-21
Depends: randomForest
Author: Michel Ballings and Dirk Van den Poel
Maintainer: Michel Ballings
Description: Create partial dependence plots for binary (cross-validated) classification models. Currently only binary classification models estimated with the packages randomForest and ada are supported.
License: GPL (>= 2)
Packaged: 2014-11-21 06:40:26 UTC; michelballings
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-21 07:56:10

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Thu, 20 Nov 2014

New package db.r with initial version 0.1.0
Package: db.r
Type: Package
Version: 0.1.0
Date: 2014-11-17
Title: A Database Exploration Tool with Assisted Querying and Schema Exploration
Author: Greg Lamp
Maintainer: Greg Lamp
Depends: R (>= 2.12), methods
Imports: DBI, rjson (>= 0.2.14), stringr
Suggests: testthat (>= 0.2), RPostgreSQL (>= 0.2.14), RMySQL (>= 0.2.14), RSQLite (>= 1.0.0)
Description: db.r uses OOP style objects (with an API akin to C++, Python, Ruby, Javascript, etc.) to help make visualizing the tables, columns, and available operations on your database easier. db.r dynamically loads database schemas, execute queries, and manage credentials.
License: FreeBSD
URL: https://github.com/yhat/db.r
BugReports: https://github.com/yhat/db.r/issues
Packaged: 2014-11-20 23:05:21.040 UTC; glamp
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-21 01:25:02

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New package treethresh with initial version 0.1-8
Package: treethresh
Version: 0.1-8
Date: 2014-11-20
Title: Methods for Tree-based Local Adaptive Thresholding
Author: Ludger Evers and Tim Heaton
Maintainer: Ludger Evers
Depends: R (>= 2.10), EbayesThresh, wavethresh
Description: This package implements TreeThresh, a locally adaptive version of EbayesThresh.
License: GPL (>= 3)
Repository: CRAN
Packaged: 2014-11-20 13:25:37 UTC; levers
NeedsCompilation: yes
Date/Publication: 2014-11-20 17:38:02

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New package sprinter with initial version 1.0.0
Package: sprinter
Type: Package
Title: Framework for Screening Prognostic Interactions
Version: 1.0.0
Date: 2014-04-11
Author: Isabell Hoffmann
Maintainer: Isabell Hoffmann
VignetteBuilder: knitr
Suggests: parallel, knitr
Depends: R (>= 3.0.0), randomForestSRC, CoxBoost, survival, LogicReg
Description: The main function of this package builds prognostic models for time-to-event settings that consider interactions by combining available statistical components. Furthermore, it provides a function for evaluating the relevance of the selected interactions by resampling techniques.
License: GPL-2
Packaged: 2014-11-20 16:07:06 UTC; hoffm005
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-20 17:29:53

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New package bglm with initial version 1.0
Package: bglm
Type: Package
Title: Bayesian Estimation in Generalized Linear Models
Version: 1.0
Date: 2014-10-29
Author: Nicolas Molano-Gonzalez, Edilberto Cepeda-Cuervo
Maintainer: Nicolas Molano-Gonzalez
Description: Implementation of Bayesian estimation in generalized linear models following Gamerman (1997).
License: GPL-2
Depends: R (>= 3.0.2), mvtnorm, methods
Suggests: car, coda, faraway
Packaged: 2014-11-20 17:02:59 UTC; A80873475
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-20 18:16:40

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New package statcheck with initial version 1.0.0
Package: statcheck
Type: Package
Title: Extract statistics from articles and recompute p values
Version: 1.0.0
Date: 2014-11-15
Author: Sacha Epskamp & Michele B. Nuijten
Maintainer: Michele B. Nuijten
Depends: R (>= 2.14.2), plyr
Description: Extract statistics from articles and recompute p values.
License: GPL-2
LazyLoad: yes
ByteCompile: yes
Packaged: 2014-11-18 12:25:05 UTC; mnuijten
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-20 10:44:36

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New package frmhet with initial version 1.0
Package: frmhet
Type: Package
Title: Regression Analysis of Fractional Responses Under Unobserved Heterogeneity
Version: 1.0
Date: 2014-11-18
Author: Joaquim J.S. Ramalho
Maintainer: Joaquim J.S. Ramalho
Description: Estimation and specification analysis of fractional regression models with neglected heterogeneity and/or endogenous covariates.
License: GPL-2
Packaged: 2014-11-20 08:27:53 UTC; Joaquim
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-20 10:32:36

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New package dfmta with initial version 1.0-3
Package: dfmta
Type: Package
Title: Phase I/II Adaptive Dose-Finding Design For MTA
Version: 1.0-3
Date: 2014-11-19
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere
Copyright: All files in src/CppBugs are copyright Whit Armstrong. All other files are copyright Institut de Recherches Internationales Servier and Institut national de la sante et de la recherche medicale.
Description: Phase I/II adaptive dose-finding design for single-agent Molecularly Targeted Agent (MTA), according to the paper "Phase I/II Dose-Finding Design for Molecularly Targeted Agent: Plateau Determination using Adaptive Randomization", Statistics in Medicine, 2014.
License: GPL-3
Depends: R (>= 3.1.0)
LinkingTo: RcppArmadillo (>= 0.3.910), BH (>= 1.54), RcppProgress (>= 0.1), Rcpp
Packaged: 2014-11-19 10:24:40 UTC; jjourdan
NeedsCompilation: yes
X-CRAN-Comment: Archived on 2014-11-18 as attempts to use a non-portable mix of C++11 and Fortran.
Repository: CRAN
Date/Publication: 2014-11-20 11:03:17

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New package curl with initial version 0.2
Package: curl
Type: Package
Title: A Connection Interface to Libcurl.
Version: 0.2
Date: 2014-11-19
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
Description: The curl() function provides a drop-in replacement for base url() with better performance and support for http 2.0, ssl (https, ftps), gzip, deflate and other libcurl goodies. This interface is implemented using the RConnection API in order to support incremental processing of both binary and text streams. If you are looking for a more user friendly http client, try the RCurl or httr packages instead.
License: MIT + file LICENSE
SystemRequirements: libcurl, OpenSSL (e.g: libcurl4-openssl-dev)
URL: http://github.com/jeroenooms/curl
BugReports: http://github.com/jeroenooms/curl/issues
Packaged: 2014-11-20 07:59:04 UTC; jeroen
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-20 10:54:22

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New package oaxaca with initial version 0.1
Package: oaxaca
Type: Package
Title: Blinder-Oaxaca decomposition
Version: 0.1
Date: 2014-11-19
Author: Marek Hlavac
Maintainer: Marek Hlavac
Description: An implementation of the Blinder-Oaxaca decomposition for linear regression models.
License: GPL (>= 2)
Imports: Formula, ggplot2, reshape2
LazyData: yes
Collate: 'oaxaca-internal.R' 'oaxaca.R'
Packaged: 2014-11-20 03:13:39 UTC; Marek Hlavac
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-20 08:13:35

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New package EGRET with initial version 2.0.0
Package: EGRET
Type: Package
Title: Exploration and Graphics for RivEr Trends (EGRET)
Version: 2.0.0
Date: 2014-10-13
Authors@R: c( person("Robert", "Hirsch", role = c("aut"), email = "rhirsch@usgs.gov"), person("Laura", "DeCicco", role = c("aut","cre"), email = "ldecicco@usgs.gov"))
Description: EGRET includes statistics and graphics for streamflow history, water quality trends, and the statistical modeling algorithm Weighted Regressions on Time, Discharge, and Season (WRTDS).
License: CC0
Depends: R (>= 3.0)
Imports: dataRetrieval, survival, fields, stats, lubridate, methods
Suggests: xtable, knitr, extrafont
LazyLoad: yes
LazyData: yes
VignetteBuilder: knitr
BuildVignettes: true
URL: http://pubs.usgs.gov/tm/04/a10/
Packaged: 2014-11-20 04:21:11 UTC; ldecicco
Author: Robert Hirsch [aut], Laura DeCicco [aut, cre]
Maintainer: Laura DeCicco
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-20 08:05:16

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Wed, 19 Nov 2014

New package ilc with initial version 1.0
Package: ilc
Type: Package
Title: Lee-Carter Mortality Models using Iterative Fitting Algorithms
Version: 1.0
Date: 2014-11-19
Depends: R (>= 3.0.3), demography, rainbow, forecast, date
Imports: survival
Author: Zoltan Butt, Steven Haberman and Han Lin Shang
Maintainer: Zoltan Butt
Description: Fitting a class of Lee-Carter mortality models using iterative fitting algorithm.
License: GPL (>= 2)
LazyData: yes
LazyLoad: yes
LazyDataCompression: xz
Packaged: 2014-11-19 19:29:14 UTC; cbeit
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-20 00:45:16

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New package PGICA with initial version 1.0
Package: PGICA
Type: Package
Title: Parallel Group ICA Algorithm
Version: 1.0
Date: 2014-11-12
Author: Shaojie Chen; Lei Huang; Huitong Qiu; Ani Eloyan; Brian Caffo; Ciprian Crainiceanu
Maintainer: Shaojie Chen
Description: A Group ICA Algorithm that can run in parallel on an SGE platform or multi-core PCs
License: GPL-2
Imports: parallel, fastICA
Packaged: 2014-11-19 16:15:49 UTC; Jason
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-19 17:33:48

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New package SEAsic with initial version 0.1
Package: SEAsic
Title: Score Equity Assessment- summary index computation
Version: 0.1
Authors@R: c(person("Anne Corinne", "Huggins-Manley", role = c("aut", "cre"), email = "ahuggins@coe.ufl.edu"), person("Douglas", "Whitaker", role = "aut"))
Author: Anne Corinne Huggins-Manley [aut, cre], Douglas Whitaker [aut]
Maintainer: Anne Corinne Huggins-Manley
Description: This package conducts Score Equity Assessment (SEA; Dorans, 2004) by calculating and plotting multiple SEA indices as introduced by a variety of authors and summarized by Huggins and Penfield (2012).
Depends: R (>= 3.1.1)
License: GPL-3
LazyData: true
Packaged: 2014-11-19 01:32:05 UTC; Doug
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-19 16:46:34

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New package QuACN with initial version 1.8.0
Package: QuACN
Type: Package
Title: QuACN: Quantitative Analysis of Complex Networks
Version: 1.8.0
Date: 2014-11-18
Author: Karl G. Kugler, Matthias Wieser, Matthias Dehmer, Michael Schutte, Laurin A.J. Mueller
Maintainer: Karl G. Kugler
Description: Quantitative Analysis of Complex Networks. This package offers a set of topological network measures to analyze complex Networks structurally.
License: LGPL
LazyLoad: yes
Depends: graph, RBGL, combinat
Suggests: Rmpfr
Imports: igraph
Packaged: 2014-11-19 13:47:45 UTC; karl.kugler
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-19 16:45:22

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New package acnr with initial version 0.2.4
Package: acnr
Type: Package
Title: Annotated Copy-Number Regions
Version: 0.2.4
Date: 2014-10-27
Author: Morgane Pierre-Jean and Pierre Neuvial
Maintainer: Morgane Pierre-Jean
Description: This data package contains SNP array data from different types of copy-number regions. These regions were identified manually by the authors of the package and may be used to generate realistic data sets with known truth.
License: LGPL (>= 2.1)
Depends: R (>= 2.10), R.utils, xtable
Repository: CRAN
Repository/R-Forge/Project: jointseg
Repository/R-Forge/Revision: 142
Repository/R-Forge/DateTimeStamp: 2014-11-17 15:27:15
Date/Publication: 2014-11-19 11:43:31
Packaged: 2014-11-17 15:45:28 UTC; rforge
NeedsCompilation: no

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Tue, 18 Nov 2014

New package analogueExtra with initial version 0.1-0
Package: analogueExtra
Type: Package
Title: Additional functions for use with the analogue package
Version: 0.1-0
Date: 18 Nov 2014
Depends: vegan3d (>= 0.65-0), analogue (>= 0.16-0)
Imports: rgl
Suggests: testthat
Authors@R: c(person(given = c("Gavin", "L."), family = "Simpson", role = c("aut", "cre"), email = "ucfagls@gmail.com"))
Maintainer: Gavin L. Simpson
BugReports: https://github.com/gavinsimpson/analogueExtra/issues
NeedsCompilation: yes
Description: Provides additional functionality for the analogue package that is not required by all users of the main package.
License: GPL-2
ByteCompile: true
URL: https://github.com/gavinsimpson/analogueExtra
Packaged: 2014-11-18 23:01:34.400 UTC; gavin
Author: Gavin L. Simpson [aut, cre]
Repository: CRAN
Date/Publication: 2014-11-19 02:11:54

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New package attribrisk with initial version 0.1
Package: attribrisk
Type: Package
Title: Population Attributable Risk
Version: 0.1
Date: 2014-03-06
Author: Louis Schenck, Elizabeth Atkinson, Cynthia Crowson, Terry Therneau
Maintainer: Louis Schenck
VignetteBuilder: knitr
Suggests: knitr,xtable,testthat
Depends: survival,boot
LazyData: Yes
LazyLoad: Yes
Description: Estimates population (etiological) attributable risk for unmatched, pair-matched or set-matched case-control designs and returns a list containing the estimated attributable risk, estimates of coefficients, and their standard errors, from the (conditional, If necessary) logistic regression used for estimating the relative risk.
License: LGPL (>= 2)
Packaged: 2014-11-18 19:57:43 UTC; m110631
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-18 21:15:06

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New package ssd with initial version 0.2
Package: ssd
Type: Package
Title: Sample Size Determination (SSD) for Unordered Categorical Data
Version: 0.2
Date: 2014-11-10
Author: Junheng Ma and Jiayang Sun
Maintainer: Junheng Ma
Description: ssd calculates the sample size needed to detect the differences between two sets of unordered categorical data.
License: GPL-2
Packaged: 2014-11-18 14:05:32 UTC; Junheng Ma
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-18 15:55:21

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New package selectspm with initial version 0.1
Package: selectspm
Type: Package
Title: Select point patterns models based on minimum contrast and AIC
Version: 0.1
Date: 2014-11-18
Author: Marcelino de la Cruz
Depends: spatstat, ecespa
Maintainer: Marcelino de la Cruz
Description: Package to fit and select point patterns models based on minimum contrast and AIC
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-11-18 13:19:51 UTC; marcelino
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-18 15:28:45

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New package MCS with initial version 0.1.0
Package: MCS
Type: Package
Title: Model Confidence Set Procedure
Version: 0.1.0
Date: 2014-10-20
Author: Leopoldo Catania & Mauro Bernardi
Maintainer: Leopoldo Catania
Depends: R(>= 3.0.1)
Description: Perform the model confidence set procedure of Hansen et al (2011).
License: GPL-2
Imports: methods
Packaged: 2014-11-18 11:00:54 UTC; Leopoldo Catania
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-18 13:49:53

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New package ensurer with initial version 1.0
Package: ensurer
Type: Package
Title: Ensure values at runtime
Version: 1.0
Date: 2014-11-17
Author: Stefan Holst Milton Bache
Maintainer: Stefan Holst Milton Bache
Description: Add simple runtime contracts to R values. These ensure that values fulfil certain conditions and will raise appropriate errors if they do not.
License: MIT + file LICENSE
Suggests: magrittr, testthat, knitr
VignetteBuilder: knitr
ByteCompile: Yes
URL: https://github.com/smbache/ensurer
Packaged: 2014-11-17 21:48:45 UTC; shb
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-18 13:27:13

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New package simPop with initial version 0.2.6
Package: simPop
Type: Package
Title: Simulation of Synthetic Populations for Survey Data Considering Auxiliary Information
Version: 0.2.6
Date: 2014-09-17
Author: Bernhard Meindl, Matthias Templ, Andreas Alfons, Alexander Kowarik, and with contributions from Mathieu Ribatet
Maintainer: Matthias Templ
Depends: R(>= 3.0.0), lattice, vcd, data.table
Imports: laeken, MASS, Rcpp (>= 0.11.0), e1071, parallel, nnet, doParallel, foreach, colorspace, methods
LinkingTo: Rcpp
Description: Simulate populations for surveys based on auxiliary data including model-based methods, calibration and combinatorial optimization tools. Developed with support of the International Household Survey Network, DFID Trust Fund TF011722
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-11-17 12:53:32 UTC; templ
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-18 11:19:59

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Mon, 17 Nov 2014

New package wrassp with initial version 0.1.2
Package: wrassp
Version: 0.1.2
Title: Interface to the ASSP Library
Authors@R: as.person(c( "Raphael Winkelmann [aut, cre]", "Lasse Bombien [aut]", "Michel Scheffers [aut]"))
Description: wrassp is a wrapper around Michel Scheffers's libassp (Advanced Speech Signal Processor). The libassp library aims at providing functionality for handling speech signal files in most common audio formats and for performing analyses common in phonetic science/speech science. This includes the calculation of formants, fundamental frequency, root mean square, auto correlation, a variety of spectral analyses, zero crossing rate, filtering etc. This wrapper provides R with a large subset of libassp's signal processing functions and provides them to the user in a (hopefully) user-friendly manner.
Depends: R (>= 3.1.1)
VignetteBuilder: knitr
Suggests: compare(>= 0.2.4), knitr(>= 1.7), testthat(>= 0.7.1.99)
License: GPL (>= 3)
URL: https://github.com/IPS-LMU/wrassp
BugReports: https://github.com/IPS-LMU/wrassp/issues
Packaged: 2014-11-17 10:59:15 UTC; ripley
Author: Raphael Winkelmann [aut, cre], Lasse Bombien [aut], Michel Scheffers [aut]
Maintainer: Raphael Winkelmann
SystemRequirements: GNU make
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-17 11:59:34

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New package spThin with initial version 0.1.0
Package: spThin
Type: Package
Title: Functions for Spatial Thinning of Species Occurrence Records for Use in Ecological Models
Version: 0.1.0
Date: 2014-11-16
Author: Matthew E. Aiello-Lammens, Robert A. Boria, Aleksandar Radosavljevic, Bruno Vilela, and Robert P. Anderson
Maintainer: Matthew E. Aiello-Lammens
Description: spThin is a set of functions that can be used to spatially thin species occurrence data. The resulting thinned data can be used in ecological modeling, such as ecological niche modeling.
Depends: spam, grid, fields, knitr
LazyData: TRUE
License: GPL-3
VignetteBuilder: knitr
Packaged: 2014-11-17 02:17:13 UTC; mlammens
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-17 08:57:55

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Sun, 16 Nov 2014

New package sla with initial version 0.1
Package: sla
Type: Package
Title: Two-Group Straight Line ANCOVA
Description: Provides directly interpretable estimated coefficients for four models in connection with the two-group straight line ANCOVA problem: (A) the full model, which requires the fitting of two intercepts and two slopes; (B) a reduced model, which requires the fitting of a single intercept and single slope; (C) a reduced model, which requires the fitting of two separate intercepts and a single, common slope; and (D) a reduced model, which requires the fitting of a single, common intercept and two separate slopes. The summary function provides tests of fit for the (null) hypotheses of: (1) equivalent data sets, (2) equivalent slopes, and (3) equivalent intercepts.
Version: 0.1
License: GPL-2
Authors@R: as.person(c( "W. Gregory Alvord [aut, cre]", "Nick Carchedi [aut]" ))
Depends: R (>= 3.0.2)
Suggests: MASS, car, ISwR, knitr
VignetteBuilder: knitr
Packaged: 2014-11-16 21:31:22 UTC; nicholasacarchedi
Author: W. Gregory Alvord [aut, cre], Nick Carchedi [aut]
Maintainer: W. Gregory Alvord
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-17 00:54:34

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New package ISOpureR with initial version 1.0.4
Package: ISOpureR
Version: 1.0.4
Date: 2013-08-25
Title: Deconvolution of Tumour Profiles
Authors@R: c(person("Gerald Quon", role = "aut", email = "gquon@mit.edu"), person("Catalina V Anghel", role = c("aut", "trl"), email="Catalina Anghel@oicr.on.ca"), person("Syed Haider", role = "aut", email="Syed.Haider@oicr.on.ca"), person("Francis Nguyen", role = "aut"), person("Amit G Deshwar", role = "aut"), person("Quaid D Morris", role = "aut", email = "Quaid.Morris@utoronto.ca"), person("Paul C Boutros", role = c("aut", "cre"), email = "Paul.Boutros@oicr.on.ca"))
Author: Gerald Quon [aut], Catalina V Anghel [aut, trl], Syed Haider [aut], Francis Nguyen [aut], Amit G Deshwar [aut], Quaid D Morris [aut], Paul C Boutros [aut, cre]
Maintainer: Paul C Boutros
Depends: R (>= 3.1.1)
Suggests: knitr
VignetteBuilder: knitr
Description: Deconvolution of mixed tumour profiles into normal and cancer for each patient, using the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires mixed tumour profiles and a set of unmatched "basis" normal profiles.
License: GPL-2
Packaged: 2014-11-16 18:20:24 UTC; canghel
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-16 22:15:14

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New package RcppAnnoy with initial version 0.0.2
Package: RcppAnnoy
Type: Package
Title: Rcpp Bindings for Annoy, a Library for Approximate Nearest Neighbors
Version: 0.0.2
Date: 2014-11-13
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel
Description: Annoy is a small C++ library for Approximate Nearest Neighbors written for efficient memory usage as well an ability to load from / save to disk. This package provides an R interface by relying on the Rcpp and BH packages, exposing the same interface as the original Python wrapper to Annoy. See https://github.com/spotify/annoy for more on Annoy. Annoy is released under Version 2.0 of the Apache License.
License: GPL (>= 2)
Imports: methods, Rcpp (>= 0.11.3)
LinkingTo: Rcpp, BH
Suggests: RUnit
OS_type: unix
Packaged: 2014-11-13 17:33:28.744301 UTC; edd
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-16 12:19:15

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New package vudc with initial version 1.0
Package: vudc
Type: Package
Title: Visualization of Univariate Data for Comparison
Version: 1.0
Date: 2014-11-15
Author: Csaba Farago
Maintainer: Csaba Farago
Description: Contains 2 new functions for visualization of univariate data: ccdplot and qddplot, along with input data.
License: GPL (>= 2)
Packaged: 2014-11-15 22:12:23 UTC; U521684
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-16 08:49:31

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Sat, 15 Nov 2014

New package GUIProfiler with initial version 0.1.2
Package: GUIProfiler
Type: Package
Title: Profiler Graphical User Interface
Version: 0.1.2
Date: 2014-11-14
Author: Fernando de Villar and Angel Rubio
Depends: Nozzle.R1, MASS
Maintainer: Fernando de Villar
Description: GUIProfiler shows graphically the results of profiling R programs by tracking their execution time.
License: GPL
Packaged: 2014-11-14 23:31:50 UTC; Gonzalo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-15 08:15:18

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New package EMDomics with initial version 0.99.0
Package: EMDomics
Title: Earth Mover's Distance for Differential Analysis of Genomics Data
Description: The EMDomics algorithm is used to perform a supervised two-class analysis to measure the magnitude and statistical significance of observed continuous genomics data between two groups. Usually the data will be gene expression values from array-based or sequence-based experiments, but data from other types of experiments can also be analyzed (e.g. copy number variation). Traditional methods like Significance Analysis of Microarrays (SAM) and Linear Models for Microarray Data (LIMMA) use significance tests based on summary statistics (mean and standard deviation) of the two distributions. This approach lacks power to identify expression differences between groups that show high levels of intra-group heterogeneity. The Earth Mover's Distance (EMD) algorithm instead computes the "work" needed to transform one distribution into the other, thus providing a metric of the overall difference in shape between two distributions. Permutation of sample labels is used to generate q-values for the observed EMD scores.
Version: 0.99.0
Authors@R: c( person("Daniel", "Schmolze", email="emd@schmolze.com", role=c("aut", "cre")), person("Andrew", "Beck", email="abeck2@bidmc.harvard.edu", role="aut"), person("Sheida", "Nabavi", email="sheida_nabavi@hms.harvard.edu", role="aut"))
Maintainer: Daniel Schmolze
Depends: R (>= 2.14.0)
Imports: emdist, BiocParallel, matrixStats, ggplot2
Suggests: knitr
License: MIT + file LICENSE
LazyData: true
VignetteBuilder: knitr
Packaged: 2014-11-14 21:41:39 UTC; Daniel
Author: Daniel Schmolze [aut, cre], Andrew Beck [aut], Sheida Nabavi [aut]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-15 08:16:29

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Thu, 13 Nov 2014

New package toxtestD with initial version 2.0
Package: toxtestD
Type: Package
Title: Experimental design for binary toxicity tests
Version: 2.0
Date: 2014-11-12
Author: Nadia Keddig and Werner Wosniok
Maintainer: Nadia Keddig
Description: Calculates sample size and dose allocation for binary toxicity tests, using the Fish Embryo Toxicity Test as example. An optimal test design is obtained by running (i) spoD (calculate the number of individuals to test under control conditions), (ii) setD (estimate the minimal sample size per treatment given the users precision requirements) and (iii) doseD (construct an individual dose scheme).
License: GPL-2
Packaged: 2014-11-13 13:46:15 UTC; wwosniok
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-13 17:22:05

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New package plotROC with initial version 1.2
Package: plotROC
Type: Package
Title: Generate Useful ROC Curve Charts for Print and Interactive Use
Version: 1.2
Date: 2014-11-12
Author: Michael C Sachs
Maintainer: Michael C Sachs
Description: Most ROC curve plots obscure the cutoff values and inhibit interpretation and comparison of multiple curves. This attempts to address those shortcomings by providing plotting and interactive tools. Functions are provided to generate an interactive ROC curve plot for web use, and print versions. A Shiny application implementing the functions is also included.
License: MIT + file LICENSE
URL: http://sachsmc.github.io/plotROC
Depends: R (>= 3.0.0)
Imports: grid, ggplot2, gridSVG, shiny
Suggests: ggthemes, knitr
VignetteBuilder: knitr
Packaged: 2014-11-13 14:30:53 UTC; sachsmc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-13 17:20:59

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New package DetR with initial version 0.0.1
Package: DetR
Type: Package
Title: Suite of Deterministic and Robust Algorithms for Linear Regression
Version: 0.0.1
Date: 2013-01-13
Suggests: mvtnorm
Imports: matrixStats, robustbase
Depends: R (>= 3.1.1),
LinkingTo: Rcpp (>= 0.10.5), RcppEigen (>= 0.3.2.2)
SystemRequirements: C++11
Description: DetLTS, DetMM (and DetS) Algorithms for Deterministic, Robust Linear Regression.
License: GPL (>= 2)
LazyLoad: yes
Authors@R: c(person( "Kaveh","Vakili" , role = c("aut", "cre"), email = "vakili.kaveh.email@gmail.com"), person("Mia", "Hubert", role = "ths", email = "mia.hubert@wis.kuleuven.be"), person("Peter", "Rousseeuw", role = "ths", email = "peter.rousseeuw@wis.kuleuven.be"))
Maintainer: Kaveh Vakili
Author: Kaveh Vakili [aut, cre], Mia Hubert [ths], Peter Rousseeuw [ths]
Packaged: 2014-11-13 13:26:20 UTC; kaveh
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-13 17:19:53

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New package nodiv with initial version 0.9.1
Package: nodiv
Type: Package
Title: Compares the distribution of sister clades through a phylogeny
Version: 0.9.1
Date: 2014-11-09
Author: Michael Krabbe Borregaard
Maintainer: Michael Krabbe Borregaard
Description: An implementation of the nodiv algorithm, (see Borregaard, M.K., Rahbek, C., Fjeldsaa, J., Parra, J.L., Whittaker, R.J. & Graham, C.H. 2014. Node-based analysis of species distributions. Methods in Ecology and Evolution). DOI: 10.1111/2041-210X.12283. Package for phylogenetic analysis of species distributions. The main function goes through each node in the phylogeny, compares the distributions of the two descendant nodes, and compares the result to a null model. This highlights nodes where major distributional divergence have occurred. The distributional divergence for these nodes is mapped using the SOS statistic.
Depends: R (>= 3.0), picante, raster, ape, sp, vegan
License: GPL-2
Packaged: 2014-11-13 09:50:41 UTC; michael
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-13 14:24:58

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New package megaptera with initial version 1.0-0
Package: megaptera
Type: Package
Title: MEGAPhylogeny Techniques in R
Version: 1.0-0
Date: 2014-10-30
Author: Christoph Heibl
Maintainer: Christoph Heibl
Depends: R (>= 2.10), snowfall, ips
Imports: ape, seqinr, methods, RPostgreSQL, XML
Suggests: knitr
Description: Given a set of taxa and marker, the goal is build a complete and correct sequence alignment for phylogenetic analysis.
License: GPL (>= 2)
VignetteBuilder: knitr
Packaged: 2014-11-13 06:55:15 UTC; stoffi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-13 08:44:56

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New package ega with initial version 1.0.0
Package: ega
Title: Error Grid Analysis
Version: 1.0.0
Authors@R: c( person("Daniel", "Schmolze", email="ega@schmolze.com", role=c("aut", "cre")) )
Maintainer: Daniel Schmolze
Description: Functions for assigning Clarke or Parkes (Consensus) error grid zones to blood glucose values, and for plotting both types of error grids.
Depends: R (>= 2.14.0)
Imports: ggplot2
Suggests: knitr
License: MIT + file LICENSE
LazyData: true
VignetteBuilder: knitr
Packaged: 2014-11-13 03:06:49 UTC; daniel
Author: Daniel Schmolze [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-13 07:43:13

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New package bde with initial version 1.0
Package: bde
Type: Package
Title: Bounded Density Estimation
Version: 1.0
Date: 2013-06-19
Author: Guzman Santafe, Borja Calvo, Aritz Perez and Jose A. Lozano
Maintainer: Guzman Santafe
Depends: R (>= 2.0)
Imports: methods,shiny,ggplot2
Description: This package includes S4 classes to deal with different estimators for densities in bounded domains. That is, a collection of different approaches to estimate densities defined within the interval [lower.limit, upper.limit], where lower.limit and upper.limit are values that can be set by the user.
License: GPL-2
LazyData: TRUE
Collate: BoundedDensity.R KernelDensity.R Chen99Kernel.R MicroBetaChen99Kernel.R MacroBetaChen99Kernel.R BoundaryKernel.R NoBoundaryKernel.R NormalizedBoundaryKernel.R Muller91BoundaryKernel.R JonesCorrectionMuller91BoundaryKernel.R Muller94BoundaryKernel.R JonesCorrectionMuller94BoundaryKernel.R BernsteinPolynomials.R Vitale.R BrVitale.R KakizawaB1.R KakizawaB2.R KakizawaB3.R HirukawaJLNKernel.R HirukawaTSKernel.R MacroBetaHirukawaJLNKernel.R MacroBetaHirukawaTSKernel.R utils.R bde.R
Packaged: 2014-11-12 17:42:43 UTC; gsantafe
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-13 07:38:50

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Wed, 12 Nov 2014

New package tufterhandout with initial version 1.2
Package: tufterhandout
Type: Package
Title: Tufte-style html document format for rmarkdown
Version: 1.2
Date: 2014-11-07
Author: Michael Sachs
Maintainer: Michael Sachs
Description: Custom template and output formats for use with rmarkdown. Produce Edward Tufte-style handouts in html formats with full support for rmarkdown features
License: MIT + file LICENSE
URL: http://sachsmc.github.io/tufterhandout
Depends: rmarkdown, knitr
Suggests: ggplot2
VignetteBuilder: knitr
Packaged: 2014-11-12 16:04:09 UTC; sachsmc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-12 18:28:26

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Tue, 11 Nov 2014

New package GLDreg with initial version 1.0
Package: GLDreg
Type: Package
Title: Fit GLD Regression Model and GLD Quantile Regression Model to Empirical Data
Version: 1.0
Date: 2014-11-11
Author: Steve Su, with contributions from: R core team for qqgld.default function.
Maintainer: Steve Su
Depends: GLDEX (>= 2.0.0.1)
Description: Owing to the rich shapes of GLDs, GLD standard/quantile regression is a competitive flexible model compared to standard/quantile regression. The proposed method has some major advantages: 1) it provides a reference line which is very robust to outliers with the attractive property of zero mean residuals and 2) it gives a unified, elegant quantile regression model from the reference line with smooth regression coefficients across different quantiles. The goodness of fit of the proposed model can be assessed via QQ plots and the Kolmogorov-Smirnov test, to ensure the appropriateness of the statistical inference under consideration. Statistical distributions of coefficients of the GLD regression line are obtained using simulation, and interval estimates are obtained directly from simulated data.
License: GPL (>= 3)
Packaged: 2014-11-10 21:54:01 UTC; Steve
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-11 12:23:43

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Mon, 10 Nov 2014

New package tumblR with initial version 1.0
Package: tumblR
Type: Package
Title: Tumblr API
Version: 1.0
Date: 2014-09-27
Author: Andrea Capozio
Maintainer: Andrea Capozio
Description: This package provides an R-interface to the Tumblr web API (see Tumblr v2 API on https://www.tumblr.com/docs/en/api/v2). Tumblr is a microblogging platform and social networking website (https://www.tumblr.com).
Depends: R (>= 3.0.0), httr (>= 0.4), RCurl (>= 1.95-4.3), ROAuth (>= 0.9.3), stringr (>= 0.6.2), RJSONIO (>= 1.3-0)
License: Artistic-2.0
Collate: 'avatar.R' 'dashboard.R' 'def.postParams.R' 'follow.R' 'followers.R' 'http.connection.R' 'info.blog.R' 'like.post.R' 'likes.R' 'post.R' 'post.delete.R' 'post.edit.R' 'post.reblog.R' 'posts.R' 'posts.draft.R' 'posts.queue.R' 'posts.submission.R' 'tagged.R' 'unfollow.R' 'unlike.post.R' 'user.following.R' 'user.info.R' 'user.likes.R' 'compact.R' 'nonce.R' 'oauth.encode.R' 'oauth.encode1.R' 'sort.names.R'
Packaged: 2014-11-10 20:43:21 UTC; Andrea
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 22:46:49

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New package episplineDensity with initial version 0.0-1
Package: episplineDensity
Version: 0.0-1
Date: 2014-11-08
Title: Density Estimation with Soft Information by Exponential Epi-splines
Author: Sam Buttrey, Johannes Royset, and Roger Wets, based on the Matlab code of Royset and Wets
Maintainer: Sam Buttrey
Depends: nloptr, pracma
Description: Produce one-dimensional density estimates using exponential epi-splines. The user may incorporate soft information, by imposing constraints that (i) require unimodality; (ii) require that the density be monotone non-increase or non-decreasing; (iii) put upper bounds on first or second moments; (iv) bound the density's values at mesh points; (v) require that the estimate be continuous or continuously differentiable; and more.
License: GPL-2
Packaged: 2014-11-10 15:51:07 UTC; sebuttre
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 18:33:30

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New package D2C with initial version 1.0
Package: D2C
Type: Package
Title: Predicting Causal Direction from Dependency Features
Version: 1.0
Date: 2014-06-10
Author: Gianluca Bontempi, Catharina Olsen, Maxime Flauder
Maintainer: Catharina Olsen
Description: The relationship between statistical dependency and causality lies at the heart of all statistical approaches to causal inference. The D2C package implements a supervised machine learning approach to infer the existence of a directed causal link between two variables in multivariate settings with n>2 variables. The approach relies on the asymmetry of some conditional (in)dependence relations between the members of the Markov blankets of two variables causally connected. The D2C algorithm predicts the existence of a direct causal link between two variables in a multivariate setting by (i) creating a set of of features of the relationship based on asymmetric descriptors of the multivariate dependency and (ii) using a classifier to learn a mapping between the features and the presence of a causal link
License: Artistic-2.0
Depends: randomForest
Imports: gRbase, lazy, RBGL, MASS, corpcor, infotheo, methods, Rgraphviz
LazyData: true
Packaged: 2014-11-10 14:36:35 UTC; cat
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 18:07:50

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New package ionflows with initial version 1.1
Package: ionflows
Type: Package
Title: Calculate the Number of Required Flows for Semiconductor Sequencing
Version: 1.1
Date: 2014-10-21
Author: Michael Bockmayr and Jan Budczies
Depends: Biostrings
Maintainer: Michael Bockmayr
Description: Two methods for calculation of the number of required flows for semiconductor sequencing: 1. Using a simulation, the number of flows can be calculated for a concrete list of amplicons. 2. An exact combinatorial model is evaluated to calculate the number of flows for a random ensemble of sequences.
License: GPL-3
Encoding: UTF-8
Packaged: 2014-11-09 23:24:42 UTC; mlb47
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 09:55:34

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Sun, 09 Nov 2014

New package PHYLOGR with initial version 1.0.8
Package: PHYLOGR
Version: 1.0.8
Date: 2014/11/09
Title: Functions for Phylogenetically Based Statistical Analyses
Author: Ramon Diaz-Uriarte and Theodore Garland, Jr
Maintainer: Ramon Diaz-Uriarte
Depends: R(>= 1.8.1)
Description: Manipulation and analysis of phylogenetically simulated data sets and phylogenetically based analyses using GLS.
License: GPL (>= 2)
URL: http://ligarto.org/rdiaz
Packaged: 2014-11-09 14:42:16.696 UTC; ramon
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 01:39:39

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New package EBglmnet with initial version 3.4
Package: EBglmnet
Type: Package
Title: Empirical Bayesian Lasso (EBlasso) and Elastic Net (EBEN) Methods for Generalized Linear Models
Version: 3.4
Date: 2014-11-08
Author: Anhui Huang
Maintainer: Anhui Huang
Description: Empirical Bayesian Lasso and Elastic Net algorithms are variable selection and estimation methods that outperform other state-of-the-art methods such as Lasso and Elastic Net methods.
License: GPL
Packaged: 2014-11-10 00:32:11 UTC; Anhui
Depends: R (>= 2.10)
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-10 01:36:41

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New package ips with initial version 0.0-7
Package: ips
Version: 0.0-7
Date: 2014-11-09
Title: Interfaces to Phylogenetic Software in R
Author: Christoph Heibl
Maintainer: Christoph Heibl
Depends: ape, colorspace, XML
Description: This package provides functions that wrap popular phylogenetic software for sequence alignment, masking of sequence alignments, and estimation of phylogenies and ancestral character states.
License: GPL (>= 2)
Packaged: 2014-11-09 21:46:41 UTC; stoffi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 00:38:44

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New package basicspace with initial version 0.13
Package: basicspace
Version: 0.13
Date: 2014-11-08
Title: Recovering a Basic Space from Issue Scales
Author: Keith Poole , Howard Rosenthal , Jeffrey Lewis , James Lo and Royce Carroll
Maintainer: James Lo
Depends: R (>= 3.0.0), tools (>= 2.0.0)
Description: Conducts Aldrich-McKelvey and Blackbox Scaling to Recover Latent Dimensions of Judgment
License: GPL-2
Repository: CRAN
Date/Publication: 2014-11-09 13:21:07
Packaged: 2014-11-09 01:21:42 UTC; jameslo
NeedsCompilation: yes

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New package riskSimul with initial version 0.1
Package: riskSimul
Type: Package
Title: Risk Quantification for Stock Portfolios under the T-Copula Model
Version: 0.1
Date: 2014-07-11
Author: Wolfgang Hormann, Ismail Basoglu
Maintainer: Wolfgang Hormann
Description: Implements efficient simulation procedures to estimate tail loss probabilities and conditional excess for a stock portfolio. The log-returns are assumed to follow a t-copula model with generalized hyperbolic or t marginals.
Depends: Runuran
License: GPL-2 | GPL-3
Copyright: Wolfgang Hormann
Packaged: 2014-11-09 08:18:36 UTC; Wolfgang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-09 13:06:05

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New package DOvalidation with initial version 0.1.0
Package: DOvalidation
Type: Package
Title: Local Linear Hazard Estimation with Do-Validated and Cross-Validated Bandwidths
Version: 0.1.0
Date: 2014-11-09
Author: M.L. Gamiz, E. Mammen, M.D. Martinez-Miranda and J.P. Nielsen
Maintainer: Maria Dolores Martinez-Miranda
Description: Local linear estimator for the univariate hazard (hazard rate) and bandwidth parameter selection using the do-validation method and the standard least squares cross-validation method.
License: GPL-2
Packaged: 2014-11-09 09:21:17 UTC; Usuario
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-09 13:07:14

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New package MetaLandSim with initial version 0.1
Package: MetaLandSim
Type: Package
Title: Metapopulation and Landscape Simulation
Version: 0.1
Date: 2014-10-08
Depends: R (>= 2.10), tcltk, spatstat, stats, sp
Imports: Biobase, e1071, fgui, grDevices, graphics, googleVis, maptools, rgeos, spgrass6, raster
Suggests: rasterVis
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro Beja.
Maintainer: Frederico Mestre
Description: Tools to generate random landscape graphs, evaluate species occurrence in dynamic landscapes, simulate future landscape occupation and evaluate range expansion when new empty patches are available (e.g. as a result of climate change).
License: GPL (>= 2)
Repository: CRAN
Packaged: 2014-11-09 00:19:18 UTC; Frederico
NeedsCompilation: no
Date/Publication: 2014-11-09 09:35:48

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Sat, 08 Nov 2014

New package sudokuAlt with initial version 0.1-2
Package: sudokuAlt
Type: Package
Title: Tools for Making, Displaying and Spoiling Sudoku Games
Version: 0.1-2
Date: 2014-11-08
Suggests: sudoku
Imports: graphics
Author: Bill Venables
Maintainer: Bill Venables
Description: Tools for making, retrieving, displaying and solving sudoku games. This package is an alternative to the earlier sudoku-solver package, 'sudoku'. The present package uses a slightly different algorithm, has a simpler coding and presents a few more sugar tools, such as plot and print methods.
License: GPL (>= 2)
Packaged: 2014-11-08 02:04:16 UTC; bill
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-08 17:10:19

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New package OptionPricing with initial version 0.1
Package: OptionPricing
Type: Package
Title: Option Pricing with Efficient Simulation Algorithms
Version: 0.1
Date: 2014-11-07
Author: Kemal Dingec, Wolfgang Hormann
Maintainer: Wolfgang Hormann
Description: Efficient Monte Carlo Algorithms for the price and the sensitivities of Asian and European Options under Geometric Brownian Motion.
License: GPL-2 | GPL-3
Copyright: Wolfgang Hormann
Packaged: 2014-11-08 07:35:25 UTC; Wolfgang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-08 17:10:10

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Fri, 07 Nov 2014

New package pez with initial version 0.9-0
Package: pez
Type: Package
Title: Phylogenetics for the Environmental Sciences
Version: 0.9-0
Date: 2014-09-16
Author: William D. Pearse, Marc W. Cadotte, Jeannine Cavender-Bares, Caroline Tucker, Steve C. Walker, Matthew R. Helmus
Maintainer: William D. Pearse
Description: Eco-phylogenetic and community phylogenetic analyses. Keeps community ecological and phylogenetic data matched up and comparable using 'comparative.comm' objects. Wrappers for common community phylogenetic indices ('shape', 'evenness', 'dispersion', and 'dissimilarity' metrics). Implementation of Cavender-Bares (2004) correlation of phylogenetic and ecological matrices ('fingerprint.regression'). Simulation of null assemblages, traits, and phylogenies ('scape', 'sim.meta.comm').
License: GPL-3
VignetteBuilder: knitr
Suggests: knitr (>= 1.6), plotrix (>= 3.5-7), methods (>= 3.1.1)
Imports: caper (>= 0.5-2), picante (>= 1.6-2), quantreg (>= 5.05), mvtnorm (>= 1.0-0), vegan (>= 2.0-10), PVR (>= 0.2.1), ade4 (>= 1.6-2), apTreeshape (>= 1.4-5), FD (>= 1.0-12)
Depends: ape (>= 3.1-4)
Packaged: 2014-11-07 17:22:53 UTC; will
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-08 01:44:04

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New package LinCal with initial version 1.0
Package: LinCal
Title: Static Univariate Frequentist and Bayesian Linear Calibration
Version: 1.0
Author: Derick L. Rivers and Edward L. Boone
Maintainer: Derick L. Rivers
Description: Estimate and confidence/credible intervals for an unknown regressor x0 given an observed y0.
Depends: R (>= 3.0.2)
License: GPL-2
LazyData: yes
NeedsCompilation: no
Repository: CRAN
Packaged: 2014-11-07 18:06:26 UTC; derickrivers
Date/Publication: 2014-11-08 02:12:12

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New package dummy with initial version 0.1.0
Package: dummy
Type: Package
Title: Automatic Creation of Dummies with Support for Predictive Modeling
Version: 0.1.0
Date: 2014-11-05
Author: Michel Ballings and Dirk Van den Poel
Maintainer: Michel Ballings
Description: Efficiently create dummies of all factors and character vectors in a data frame. Support is included for learning the categories on one data set (e.g., a training set) and deploying them on another (e.g., a test set).
License: GPL (>= 2)
Packaged: 2014-11-06 19:07:03 UTC; michelballings
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-08 02:11:28

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