Fri, 25 Apr 2014

New package predfinitepop with initial version 1.0
Package: predfinitepop
Type: Package
Title: Predictive Inference on Totals and Averages of Finite Populations Segmented in Planned and Unplanned Domains.
Version: 1.0
Date: 2014-04-24
Copyright: Banco de Mexico
Author: Juan Carlos Martinez-Ovando, Sergio I. Olivares-Guzman, Adriana Roldan-Rodriguez.
Maintainer: Juan Carlos Martinez-Ovando
Description: This package computes Bayesian predictive inference on totals and averages of finite populations segmented in planned and unplanned domains. Inference is based on Bayesian nonparametric methods using species-sampling models (specifically the Dirichlet process).
Acknowledgement: The authors appreciate advice from Pedro Gonzalez-Alegria and Claudia Velazquez-Villegas of Banco de Mexico.
License: GPL-3
Packaged: 2014-04-25 00:41:58 UTC; JuanCarlos
Depends: R (>= 2.10)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-25 07:33:52

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Thu, 24 Apr 2014

New package falcon with initial version 0.1
Package: falcon
Version: 0.1
Date: 2014-03-20
Title: Finding Allele-specific Copy Number in Next-Generation Sequencing Data
Author: Hao Chen and Nancy R. Zhang
Maintainer: Hao Chen
Depends: R (>= 3.0.1)
Description: This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.
License: GPL (>= 2)
Packaged: 2014-04-24 18:46:12 UTC; hao
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-24 22:59:03

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New package binhf with initial version 1.0-1
Package: binhf
Title: Haar-Fisz functions for binomial data
Version: 1.0-1
Date: 24/04/2014
Author: Matt Nunes
Depends: R (>= 2.10), wavethresh, adlift (>= 0.9.2)
Description: Binomial Haar-Fisz transforms for Gaussianization
Maintainer: Matt Nunes
License: GPL (>= 2)
Packaged: 2014-04-24 10:07:36 UTC; nunes
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-24 13:19:59

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New package sand with initial version 1.0.2
Package: sand
Version: 1.0.2
Date: 2014-04-23
Title: Statistical Analysis of Network Data with R
Author: Eric D Kolaczyk, Gabor Csardi
Maintainer: Gabor Csardi
Depends: igraph, igraphdata
Suggests: GO.db, GOstats, ROCR, ape, car, eigenmodel, ergm, fdrtool, ggplot2, huge, kernlab, lattice, mixer, network, networkDynamic, networkTomography, ngspatial, org.Sc.sgd.db, sna, vioplot
Description: Data sets for the book 'Statistical Analysis of Network Data with R'.
License: GPL-3
URL: https://github.com/kolaczyk/sand
BugReports: https://github.com/kolaczyk/sand/issues
LazyData: true
Packaged: 2014-04-24 03:40:10 UTC; gaborcsardi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-24 08:16:55

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New package qdapTools with initial version 0.0.2
Package: qdapTools
Type: Package
Title: Tools for the qdap package.
Version: 0.0.2
Date: 2014-04-19
Authors@R: c(person("Bryan", "Goodrich", role = "ctb"), person("Dason", "Kurkiewicz", role = "ctb"), person("Kirill", "Mller", role = "ctb"), person("Tyler", "Rinker", email = "tyler.rinker@gmail.com", role = c("aut", "cre")))
Maintainer: Tyler Rinker
Depends: R (>= 3.0.0)
Imports: chron, RCurl
LazyData: TRUE
Description: This package is a collection of tools associated with the qdap package that may be useful outside of the context of text analysis.
License: GPL-2
URL: http://trinker.github.com/qdapTools/
BugReports: http://github.com/trinker/qdapTools/issues
Packaged: 2014-04-24 02:05:36 UTC; trinker
Author: Bryan Goodrich [ctb], Dason Kurkiewicz [ctb], Kirill Mller [ctb], Tyler Rinker [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-24 07:43:16

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New package MILC with initial version 1.0
Package: MILC
Type: Package
Title: MIcrosimulation Lung Cancer (MILC) model
Version: 1.0
Date: 2014-02-18
Author: Stavroula A. Chrysanthopoulou
Maintainer: Stavroula A. Chrysanthopoulou
Description: The MILC package is designed to predict individual trajectories using the continuous time microsimulation model MILC, that describes the natural history of lung cancer.
License: GPL (>= 2)
Packaged: 2014-04-23 20:29:21 UTC; schrysan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-24 07:43:03

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New package clusterfly with initial version 0.4
Package: clusterfly
Type: Package
Title: Explore clustering interactively using R and GGobi
Version: 0.4
Author: Hadley Wickham
Maintainer: Hadley Wickham
Description: Visualise clustering algorithms with GGobi. Contains both general code for visualising clustering results and specific visualisations for model-based, hierarchical and SOM clustering.
URL: http://had.co.nz/clusterfly
Depends: rggobi
Imports: e1071, reshape2, plyr, RGtk2
Suggests: som, mclust, kohonen, ggplot2
License: MIT + file LICENSE
LazyData: true
Roxygen: list(wrap = FALSE)
Packaged: 2014-04-23 19:39:40 UTC; hadley
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-24 07:43:09

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Wed, 23 Apr 2014

New package sglasso with initial version 1.0-0
Package: sglasso
Type: Package
Title: Lasso method for RCON(V,E) models
Version: 1.0-0
Date: 2014-04-23
Author: Luigi Augugliaro
Maintainer: Luigi Augugliaro
Depends: Matrix
Description: RCON(V, E) models (Hojsgaard, et al., 2008) are a kind of restriction of the Gaussian Graphical Models defined by a set of equality constraints on the entries of the concentration matrix. sglasso package implements the structured graphical lasso (sglasso) estimator proposed in Augugliaro et al. (2014) for the weighted l1-penalized RCON(V, E) model. Two cyclic coordinate algorithms are implemented to compute the sglasso estimator, i.e. a cyclic coordinate minimization (CCM) algorithm and a cyclic coordinate descent (CCD) algorithm.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-04-23 16:42:00 UTC; francesca
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-23 19:51:24

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New package REdaS with initial version 0.9.0
Package: REdaS
Type: Package
Title: Companion Package to the Book “R: Einführung durch angewandte Statistik”
Version: 0.9.0
Date: 2014-04-23
Authors@R: person(given=c("Marco", "Johannes"), family="Maier", email="marco.maier@wu.ac.at", role=c("cre","aut"))
Description: This package provides functions used in the second edition of “R: Einführung durch angewandte Statistik”.
Depends: R (>= 3.0.0), grid
Suggests: car, GPArotation, mclust, psych, UsingR, vcd
License: GPL-2
Encoding: UTF-8
Packaged: 2014-04-23 16:14:58 UTC; hornik
Author: Marco Johannes Maier [cre, aut]
Maintainer: Marco Johannes Maier
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-23 18:16:38

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New package phenability with initial version 1.0
Package: phenability
Type: Package
Title: Nonparametric Stability Analysis
Version: 1.0
Date: 2014-04-22
Author: Leonardo Castelo Branco
Maintainer: Leonardo C. Branco
Description: This package is an alternative to carrying out phenotypic adaptability and stability analyses, taking into account nonparametric statistics, and can be used as a robust approach, and less sensitive to departures from common genotypic, environmental, and GxE effects data assumptions (e.g., normal distribution of errors).
Depends: calibrate, R (>= 2.12.0)
License: GPL-3
NeedsCompilation: no
Repository: CRAN
Packaged: 2014-04-23 12:55:38 UTC; root
Date/Publication: 2014-04-23 16:27:27

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New package MIICD with initial version 1.0
Package: MIICD
Type: Package
Title: Multiple Imputation for interval censored data regression
Version: 1.0
Date: 2014-02-13
Author: Marc Delord
Maintainer: Marc Delord
Description: Applies the Pan's (2000) multiple imputation approach to Cox or Fine and Gray regression for interval censored data.
License: GPL-3
Depends: mstate , prodlim, cmprsk, riskRegression
Imports: MASS , survival
Packaged: 2014-04-23 13:08:50 UTC; marc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-23 15:18:30

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New package NormalLaplace with initial version 0.2-0
Package: NormalLaplace
Version: 0.2-0
Date: 2011-01-10
Title: The Normal Laplace Distribution
Author: David Scott , Jason Shicong Fu and Simon Potter
Maintainer: David Scott
Depends: R (>= 2.3.0), DistributionUtils, GeneralizedHyperbolic
Suggests: RUnit
Encoding: latin1
Description: This package provides functions for the normal Laplace distribution. It is currently under development and provides only limited functionality. Density, distribution and quantile functions, random number generation, and moments are provided.
License: GPL (>= 2)
Repository: CRAN
Repository/R-Forge/Project: rmetrics
Repository/R-Forge/Revision: 4777
Date/Publication: 2014-04-23 06:54:00
Packaged: 2014-04-23 00:55:50 UTC; dsco036
NeedsCompilation: no

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New package GPLTR with initial version 0.85
Package: GPLTR
Type: Package
Title: Generalized Partially Linear Tree-based Regression Model
Version: 0.85
Date: 2014-04-22
Author: Cyprien Mbogning and Wilson Toussile
Maintainer: Cyprien Mbogning
Description: Package for generalized partially linear tree-based regression model, combining a generalized linear model with an additional tree part on the same scale.
License: GPL (>= 2.0)
LazyLoad: yes
Depends: rpart , parallel
Packaged: 2014-04-22 22:17:18 UTC; elodie
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-23 06:53:56

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Tue, 22 Apr 2014

New package FDboost with initial version 0.0-5
Package: FDboost
Type: Package
Title: Boosting functional regression models
Version: 0.0-5
Date: 2013-04-29
Author: Sarah Brockhaus
Maintainer: Sarah Brockhaus
Description: Boosting functional regression models
Depends: R (>= 3.0.0), mboost
Imports: Matrix, mgcv, zoo, nnls
Suggests: fda, fields, maps, mapdata
License: GPL-2
Packaged: 2014-04-22 16:09:46 UTC; fabians
Collate: 'FDboost.R' 'baselearners.R' 'crossvalidation.R' 'methods.R' 'bkroneckerTrafo.R' 'utilityFunctions.R'
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-22 20:37:15

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New package quipu with initial version 1.9.0
Package: quipu
Type: Package
Title: Summary charts of micro satellite profiles for a set of biological samples
Version: 1.9.0
Date: 2014-04-15
Copyright: International Potato Center
Author: Reinhard Simon, Pablo Carhuapoma, Vilma Hualla, Stef de Haan, Marc Ghislain, Jorge Nunez, Rene Gomez, Felipe de Mendiburu, William Roca, Merideth Bonierbale
Maintainer: Reinhard Simon
Description: Gene banks increasingly use molecular markers for routine characterization of plant collections and farmer managed diversity. The gene bank of the International Potato Center presently uses a micro-satellite marker kit to produce molecular profiles for potato accessions. We have been searching for a compact graphical representation that shows both molecular diversity and accession characteristics - thus permitting biologists and collection curators to have a simple way to interpret molecular data. Inspired by the ancient Andean data recording system we devised a graph that allows for standardized representation while leaving room for updates of the marker kit and the collection of accessions. The graph has been used in several catalogs of potatoes.
License: GPL-2
VignetteBuilder: knitr
Suggests: knitr
Depends: R (>= 3.0.0), stats, agricolae, stringr, pixmap, shiny, xtable
Packaged: 2014-04-22 15:03:04 UTC; rsimon
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-22 18:49:03

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New package statfi with initial version 0.9.06
Package: statfi
Type: Package
Title: statfi R tools
Version: 0.9.06
Date: 2013-04-21
Author: Leo Lahti, Juuso Parkkinen, Joona Lehtomaki
Maintainer: Leo Lahti
Description: Statistics Finland (Tilastokeskus) Open Data R Tools
License: BSD_2_clause + file LICENSE
Depends: R (>= 3.0.2), pxR
URL: https://github.com/rOpenGov/statfi
LazyLoad: yes
Packaged: 2014-04-22 13:17:16 UTC; antagomir
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-22 16:34:19

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New package crackR with initial version 0.3-9
Package: crackR
Type: Package
Title: Probabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures
Version: 0.3-9
Date: 2014-04-21
Author: Keith Halbert
Maintainer: Keith Halbert
Description: Using a sampling-based approach (either sequential importance sampling or explicit Monte Carlo), this package can be used to perform a probabilistic damage tolerance for aircraft structures. It can model a single crack, or two simultaneously growing fatigue cracks (the so-called continuing damage problem). With a single crack, multiple types of future repairs are possible.
License: GPL-3
Depends: Hmisc (>= 3.14-3), evd (>= 2.3-0)
Packaged: 2014-04-21 17:37:43 UTC; k
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-22 07:23:26

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Mon, 21 Apr 2014

New package openxlsx with initial version 1.0.3
Package: openxlsx
Type: Package
Title: .xlsx reading, writing and editing.
Version: 1.0.3
Date: 2014-02-06
Author: Alexander Walker
Maintainer: Alexander Walker
Description: This package simplifies the creation of .xlsx files by providing a high level interface to writing, styling and editing worksheets. Through the use of Rcpp, read/write times are comparable to the xlsx and XLConnect packages with the added benefit of removing the dependency on Java.
License: GPL-3
LinkingTo: Rcpp
Imports: methods, Rcpp
Packaged: 2014-04-21 06:12:25 UTC; Alex
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-21 15:40:58

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New package GSAgm with initial version 1.0
Package: GSAgm
Type: Package
Title: Gene Set Analysis using the Gamma Method
Version: 1.0
Date: 2013-02-25
Author: Rama Raghavan, Alice Wang
Maintainer: Rama Raghavan
Description: GSAgm is an R package that completes a self-contained gene set analysis (GSA) for RNA-seq and SNP data using the Gamma Method.
License: GPL-2
Depends: survival, edgeR
Packaged: 2014-04-18 15:19:47 UTC; awang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-21 16:51:25

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Sat, 19 Apr 2014

New package RApiSerialize with initial version 0.1.0
Package: RApiSerialize
Type: Package
Title: R API Serialization
Version: 0.1.0
Date: 2014-04-19
Author: Dirk Eddelbuettel, Junji Nakano, Ei-ji Nakama, and R Core (original code)
Maintainer: Dirk Eddelbuettel
Description: This package provides other packages with access to the internal R serialization code. Access to this code is provided at the C function level by using the registration of native function mechanism. Client packages simply include a single header file RApiSerializeAPI.h provided by this package. This packages builds on the Rhpc package by Junji Nakano and Ei-ji Nakama which also includes a (partial) copy of the file src/main/serialize.c from R itself. The R Core group is the original author of the serialization code made available by this package.
License: GPL (>= 2)
Packaged: 2014-04-19 13:45:33.622462 UTC; edd
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-19 18:49:29

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Fri, 18 Apr 2014

New package rWBclimate with initial version 0.1.3
Package: rWBclimate
Authors@R: c(person("Edmund", "Hart", role = c("aut", "cre"), email = "edmund.m.hart@gmail.com"))
Version: 0.1.3
License: MIT + file LICENSE
URL: http://github.com/ropensci/rWBclimate
BugReports: http://github.com/ropensci/rWBclimate/issues
Type: Package
Title: A package for accessing World Bank climate data
Description: This package will download model predictions from 15 different global circulation models in 20 year intervals from the world bank. Users can also access historical data, and create maps at 2 different spatial scales.
LazyData: True
VignetteBuilder: knitr
Suggests: knitr
Imports: ggplot2, httr, plyr, rgdal, jsonlite, reshape2, sp
Packaged: 2014-04-18 21:09:16 UTC; tedhart
Author: Edmund Hart [aut, cre]
Maintainer: Edmund Hart
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-19 00:53:12

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New package QuantifQuantile with initial version 0.1
Package: QuantifQuantile
Type: Package
Title: Estimation of conditional quantiles using optimal quantization
Version: 0.1
Date: 2014-04-18
Author: Isabelle Charlier and Davy Paindaveine and Jerome Saracco
Maintainer: Isabelle Charlier
Description: Estimation of conditional quantiles using optimal quantization. Construction of an optimal grid of N quantizers, estimation of conditional quantiles and data driven selection of the size N of the grid. Graphical illustrations for the selection of N and of resulting estimated curves or surfaces when the dimension of the covariable is one or two.
License: GPL (>= 2.0)
Depends: rgl
Packaged: 2014-04-18 14:24:25 UTC; isabellecharlier
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-18 19:41:42

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New package Density.T.HoldOut with initial version 1.02
Encoding: UTF-8
Package: Density.T.HoldOut
Type: Package
Title: Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation
Version: 1.02
Date: 2014-01-08
Author: Nelo Magalhães (Univ. Paris Sud 11 - INRIA team Select) and Yves Rozenholc (Univ. Paris Descartes - INRIA team Select)
Maintainer: Nelo Magalhães
Description: Implementation in the density framework of the non-combinatorial algorithm and its greedy version, introduced by Magalhães and Rozenholc (2014), for T-estimation Hold-Out proposed in Birgé (2006, Section 9). The package provide an implementation which uses several families of estimators (regular and irregular histograms, kernel estimators) which may be used alone or combined. As a complement, provides also a comparison with other Held-Out derived from least-squares and maximum-likelihood.
License: GPL (>= 2)
Imports: histogram
Packaged: 2014-04-17 18:33:01 UTC; rozen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-18 16:17:26

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Thu, 17 Apr 2014

New package WikipediR with initial version 0.5
Package: WikipediR
Type: Package
Title: A MediaWiki API wrapper
Version: 0.5
Date: 2014-04-13
Author: Oliver Keyes
Maintainer: Oliver Keyes
Description: WikipediR is a wrapper for the MediaWiki API, aimed particularly at the Wikimedia 'production' wikis, such as Wikipedia
License: MIT + file LICENSE
Depends: httr, jsonlite, methods
BugReports: https://github.com/Ironholds/WikipediR/issues
Classification/ACM: J.1
Packaged: 2014-04-17 17:55:16 UTC; ironholds
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-18 00:38:14

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New package userfriendlyscience with initial version 0.1.1
Package: userfriendlyscience
Type: Package
Title: Userfriendlyscience: quantitative analysis made accessible
Version: 0.1.1
Date: 2014-02-25
Author: Gjalt-Jorn Peters
Maintainer: Gjalt-Jorn Peters
License: GPL (>= 2)
Description: This package contains a number of functions that serve two goals: first, make R more accessible to people migrating from SPSS by adding a number of functions that behave roughly like their SPSS equivalents; and second, make a number of slightly more advanced functions more userfriendly to relatively novice users.
URL: http://userfriendlyscience.com
Imports: lavaan, psych, GGally, pwr, plyr, grid, fBasics, e1071, ltm, MBESS, knitr, xtable, foreign
Depends: ggplot2
Packaged: 2014-04-17 16:18:32 UTC; micro_000
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-17 23:17:14

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New package ShrinkCovMat with initial version 1.0.0
Package: ShrinkCovMat
Type: Package
Title: Shrinkage Covariance Matrix Estimators
Version: 1.0.0
Date: 2014-04-17
Author: Anestis Touloumis
Maintainer: Anestis Touloumis
Description: This package provides nonparametric Stein-type shrinkage estimators of the covariance matrix that are suitable in high-dimensional settings, that is when the number of variables is larger than the sample size.
License: GPL-2 | GPL-3
Depends: R (>= 2.10)
LazyLoad: yes
Packaged: 2014-04-17 14:20:12 UTC; toulou01
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-17 23:12:07

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New package HSAUR3 with initial version 1.0-0
Package: HSAUR3
Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Date: 2014-04-17
Version: 1.0-0
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn
Description: Functions, data sets, analyses and examples from the third edition of the book `A Handbook of Statistical Analyses Using R' (Torsten Hothorn and Brian S. Everitt, Chapman & Hall/CRC, 2014). The first chapter of the book, which is entitled `An Introduction to R', is completely included in this package, for all other chapters, a vignette containing all data analyses is available. In addition, Sweave source code for slides of selected chapters is included in this package (see HSAUR3/inst/slides).
URL: The publishers web page is http://www.crcpress.com/product/isbn/9781420079333
Depends: R (>= 3.0.0), tools
Suggests: boot (>= 1.3-9), lattice (>= 0.20-23), MASS (>= 7.3-29), mgcv (>= 1.7-27), rpart (>= 4.1-4), survival (>= 2.37-4), alr3 (>= 2.0.5), ape (>= 3.0-11), coin (>= 1.0-23), flexmix (>= 2.3-11), Formula (>= 1.1-1), gamair (>= 0.0.8), gamlss.data (>= 4.2.6), gee (>= 4.13-18), KernSmooth (>= 2.23-10), lme4 (>= 1.0-5), maps (>= 2.3-6), maptools (>= 0.8-27), mboost (>= 2.2-3), mclust (>= 4.2), mlbench (>= 2.1-1), mice (>= 2.18), multcomp (>= 1.3-1), mvtnorm (>= 0.9-9996), partykit (>= 0.8-0), quantreg (>= 5.05), randomForest (>= 4.6-7), rmeta (>= 2.16), sandwich (>= 2.3-0), scatterplot3d (>= 0.3-34), sp (>= 1.0-14), TH.data (>= 1.0-2), tm (>= 0.5-9.1), vcd (>= 1.3-1), wordcloud (>= 2.4)
LazyData: yes
License: GPL-2
Encoding: UTF-8
Packaged: 2014-04-17 10:31:57 UTC; hothorn
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-18 00:21:17

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New package MSQC with initial version 1.0.1
Package: MSQC
Type: Package
Title: Multivariate Statistical Quality Control
Version: 1.0.1
Date: 2014-04-17
Author: Edgar Santos-Fernandez
Maintainer: Edgar Santos-Fernandez
Depends: rgl
Description: This package is a toolkit for multivariate process monitoring. It contains the main alternatives of multivariate control chart such as: Hotelling, Chi squared, MEWMA, MCUSUM and Generelized Variance control chart. Also, it includes some tools for assessing multivariate normality like: Mardia, Royston and Henze Zirkler test and the univariate D'Agostino test. Moreover, it possess ten didactic datasets.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-04-16 23:55:48 UTC; esantosf
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-17 18:28:39

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New package ATmet with initial version 1.2
Package: ATmet
Type: Package
Title: Advanced Tools for Metrology
Version: 1.2
Date: 2014-01-06
Author: S.Demeyer, A.Allard
Maintainer: Alexandre Allard
Depends: R (>= 2.7.0), DiceDesign, lhs, metRology, msm, sensitivity
Description: This package provides functions for smart sampling and sensitivity analysis for metrology applications, including computationally expensive problems.
License: GPL-3
Packaged: 2014-04-17 09:21:13 UTC; ALLARD
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-17 19:04:39

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Wed, 16 Apr 2014

New package BEQI2 with initial version 1.0-0
Package: BEQI2
Type: Package
Title: Benthic Ecosystem Quality Index 2
Description: Benthic Ecosystem Quality Index 2. This package facilitates the analysis of benthos data. It estimates several quality indices like the total abundance of species, species richness, Shannon index, AZTI Marine Biotic Index (AMBI), and the BEQI-2 index. The package includes two additional optional features that enhance data preprocessing: (1) genus to species conversion, i.e.,taxa counts at the taxonomic genus level can optionally be converted to the species level and (2) pooling: small samples are combined to bigger samples with a standardized size to (a) meet the data requirements of the AMBI, (b) generate comparable species richness values and (c) give a higher benthos signal to noise ratio.
Version: 1.0-0
Date: 2014-04-16
Authors@R: c(person(given = "Willem", family = "van Loon", email = "willem.van.loon@rws.nl", role = c("aut", "cph")), person(given = "Dennis", family = "Walvoort", email = "dennis.Walvoort@wur.nl", role = c("aut", "cre")))
Depends: R (>= 3.0.2), methods, tcltk
Imports: knitr, markdown, RJSONIO, xtable, plyr, reshape2
Suggests: testthat
VignetteBuilder: knitr
License: GPL (>= 3)
Packaged: 2014-04-16 14:38:31 UTC; dennis
Author: Willem van Loon [aut, cph], Dennis Walvoort [aut, cre]
Maintainer: Dennis Walvoort
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-16 22:50:45

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New package RHive with initial version 2.0-0.0
Package: RHive
Type: Package
Title: R and Hive
Version: 2.0-0.0
Description: RHive is an R extension facilitating distributed computing via HIVE query. It provides an easy to use HQL like SQL and R objects and functions in HQL.
Author: NexR
Maintainer: Johan Ahn
License: Apache License (== 2.0)
Depends: R (>= 2.13.0), rJava (>= 0.9-0)
Suggests: RUnit
SystemRequirements: Hadoop core >= 0.20.3 (http://hadoop.apache.org/core/), Hive >= 0.8 (http://hive.apache.org/)
OS_type: unix
Repository: CRAN
Packaged: 2014-04-15 01:26:27 UTC; root
NeedsCompilation: no
X-CRAN-Comment: Archived 2013-08-07 as the former maintainer withdrew maintaienrship and the nominated new maintainer did never respond to requests to update the package.
Date/Publication: 2014-04-16 09:21:53

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New package bigalgebra with initial version 0.8.4
Package: bigalgebra
Version: 0.8.4
Date: 2014-04-15
Title: BLAS routines for native R matrices and big.matrix objects.
Author: Michael J. Kane, Bryan Lewis, and John W. Emerson
Maintainer: Michael J. Kane
Imports: methods
Depends: bigmemory (>= 4.0.0)
LinkingTo: bigmemory, BH
Description: This package provides arithmetic functions for R matrix and big.matrix objects.
License: LGPL-3 | Apache License 2.0
Copyright: (C) 2014 Michael J. Kane, Bryan Lewis, and John W. Emerson
URL: http://www.bigmemory.org
LazyLoad: yes
Packaged: 2012-12-26 22:17:06 UTC; blewis
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-16 09:21:50

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Tue, 15 Apr 2014

New package HiLMM with initial version 1.0
Package: HiLMM
Type: Package
Title: Estimation of heritability in high dimensional Linear Mixed Models
Version: 1.0
Date: 2014-04-10
Author: Anna Bonnet
Maintainer: Anna Bonnet
Description: HiLMM provides estimation of heritability with confidence intervals in linear mixed models.
License: GPL-2
Packaged: 2014-04-15 13:09:37 UTC; levyleduc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 18:21:12

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New package StereoMorph with initial version 1.0
Package: StereoMorph
Title: Stereo Camera Calibration and Reconstruction
Description: StereoMorph provides functions for the collection of 3D points and curves using a stereo camera setup.
Version: 1.0
Depends: grid
Suggests: rgl
Author: Aaron Olsen, Annat Haber
Maintainer: Aaron Olsen
License: GPL-2
Packaged: 2014-04-15 03:34:20 UTC; aaron
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 15:47:06

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New package MPCI with initial version 1.0.6
Package: MPCI
Type: Package
Title: Multivariate Process Capability Indices (MPCI)
Version: 1.0.6
Date: 2014-04-13
Author: Edgar Santos-Fernandez, Michele Scagliarini.
Maintainer: Edgar Santos-Fernandez
Description: MPCI package performs the followings Multivariate Process Capability Indices: Shahriari et al. (1995) Multivariate Capability Vector, Taam et al. (1993) Multivariate Capability Index (MCpm), Pan and Lee (2010) proposal (NMCpm) and the followings based on Principal Component Analysis (PCA):Wang and Chen (1998), Xekalaki and Perakis (2002) and Wang (2005). Moreover, it includes two datasets.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-04-14 23:18:37 UTC; esantosf
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 15:31:19

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New package Johnson with initial version 1.4
Package: Johnson
Type: Package
Title: Johnson Transformation
Version: 1.4
Date: 2014-04-15
Author: Edgar Santos Fernandez
Maintainer: Edgar Santos Fernandez
Description: RE.Johnson performs the Johnson Transformation to increase the normality.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-04-14 23:37:38 UTC; esantosf
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 15:55:00

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Mon, 14 Apr 2014

New package VAR.etp with initial version 0.1
Package: VAR.etp
Type: Package
Title: VAR modelling: estimation, testing, and prediction
Version: 0.1
Date: 2014-04-14
Author: Jae. H. Kim
Maintainer: Jae H. Kim
Description: Estimation, Hypothesis Testing, Prediction for Stationary Vector Autoregressive Models
License: GPL-2
Packaged: 2014-04-14 20:21:51 UTC; jkim
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-15 00:32:09

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New package OceanView with initial version 1.0
Package: OceanView
Version: 1.0
Title: Visualisation of Oceanographic Data and Model Output.
Author: Karline Soetaert
Maintainer: Karline Soetaert
Depends: plot3D, plot3Drgl, R (>= 2.10)
Imports: shape
Description: Functions for transforming and viewing 2-D and 3-D (oceanographic) data and model output.
License: GPL (>= 3.0)
LazyData: yes
Repository: CRAN
Repository/R-Forge/Project: plot3d
Repository/R-Forge/Revision: 80
Repository/R-Forge/DateTimeStamp: 2014-04-11 08:12:26
Date/Publication: 2014-04-14 19:18:54
Packaged: 2014-04-11 10:18:52 UTC; rforge
NeedsCompilation: yes

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New package LumiWCluster with initial version 1.0.2
Package: LumiWCluster
Version: 1.0.2
Date: 2010-09-02
Title: Weighted model based clustering
Author: Pei Fen Kuan , Xin Zhou
Maintainer: Xin Zhou
Depends: R (>= 2.10.0)
Description: The LumiWCluster package implements the proposed weighted model based clustering for Illumina Methylation BeadArray (Kuan et al., 2010). There are two parts to this package. The first part provides function to normalize the methylation data from the Illumina GoldenGate platform. We will include the normalization for Illumina Infinium platform in future. The second part provides function to identify subgroups with distinct methylation profiles in Illumina BeadArray. It works for both Infinium and GoldenGate platform, as well as any other platforms including gene expression arrays. The core of the algorithm is based on the paper by Wang and Zhu (2008), which automatically selects important CpGs/probes. LumiWCluster incorporates the detection p-values (a quality measure of probe performance reported by Illumina BeadStudio or GenomeStudio) systematically in the clustering algorithm and avoids arbitrary cutoff for excluding unreliable probes. Further details and motivation can be found in Kuan et al. (2010).
License: GPL (>= 2)
Packaged: 2014-04-13 23:11:57 UTC; peifenkuan
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-14 18:40:03

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New package DivE with initial version 1.0
Package: DivE
Type: Package
Title: Diversity Estimator
Version: 1.0
Date: 2014-04-01
Author: Daniel Laydon, Aaron Sim, Charles Bangham, Becca Asquith
Maintainer: Daniel Laydon
Depends: deSolve, FME, rgeos, sp, R (>= 2.15.3)
Description: R-package DivE contains functions for the DivE estimator (Laydon, D. et al., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014). The DivE estimator is a heuristic approach to estimate the number of classes or the number of species (species richness) in a population.
License: GPL (>= 2)
LazyData: TRUE
Packaged: 2014-04-14 12:24:21 UTC; aaronsim
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-14 19:07:04

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New package compositions with initial version 1.40-0
Package: compositions
Version: 1.40-0
Date: 2013-04-08
Title: Compositional Data Analysis
Author: K. Gerald van den Boogaart , Raimon Tolosana, Matevz Bren
Maintainer: K. Gerald van den Boogaart
Depends: R (>= 2.2.0), tensorA, robustbase, energy, bayesm
Suggests: rgl
Description: The package provides functions for the consistent analysis of compositional data (e.g. portions of substances) and positive numbers (e.g. concentrations) in the way proposed by Aitchison and Pawlowsky-Glahn.
License: GPL (>= 2)
URL: http://www.stat.boogaart.de/compositions
Packaged: 2014-04-12 09:04:49 UTC; boogaart
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-14 18:36:22

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New package rHealthDataGov with initial version 1.0.0
Package: rHealthDataGov
Type: Package
Title: Retrieve data sets from the HealthData.gov data API
Version: 1.0.0
Date: 2014-04-13
Author: Erin LeDell
Maintainer: Erin LeDell
Description: An R interface for the HealthData.gov data API. For each data resource, you can filter results (server-side) to select subsets of data.
License: GPL-2
Depends: R (>= 3.0.1), bit64, httr, jsonlite
LazyLoad: yes
LazyData: yes
Packaged: 2014-04-14 00:08:14 UTC; ledell
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-14 14:14:26

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New package mdatools with initial version 0.5.1
Package: mdatools
Title: Multivariate data analysis for chemometrics
Version: 0.5.1
Date: 2014-04-13
Author: Sergey Kucheryavskiy
Maintainer: Sergey Kucheryavskiy
Description: The package implements projection based methods for preprocessing, exploring and analysis of multivariate data used in chemometrics.
Suggests:
Depends:
License: GPL-3
Packaged: 2014-04-14 06:03:36 UTC; svkucheryavski
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-14 14:13:42

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New package ibs with initial version 1.0
Package: ibs
Type: Package
Title: Integrated B-spline
Version: 1.0
Date: 2014-04-12
Author: Feng Chen
Maintainer: Feng Chen
Description: Calculate B-spline basis functions with a given set of knots and order, or a B-spline function with a given set of knots and order and set of de Boor points (coefficients), or the integral of a B-spline function.
License: GPL (>= 2)
Packaged: 2014-04-13 22:43:15 UTC; z3243864
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-14 14:12:30

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New package binda with initial version 1.0.0
Package: binda
Version: 1.0.0
Date: 2014-04-14
Title: Multi-Class Discriminant Analysis using Binary Predictors
Author: Sebastian Gibb and Korbinian Strimmer.
Maintainer: Korbinian Strimmer
Depends: R (>= 2.15.1), entropy (>= 1.2.0)
Suggests: MASS
Description: The "binda" package implements functions for multi-class discriminant analysis using binary predictors, for corresponding variable selection, and for dichotomizing continuous data.
License: GPL (>= 3)
URL: http://strimmerlab.org/software/binda/
Packaged: 2014-04-14 00:26:52 UTC; strimmer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-14 14:54:59

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Sun, 13 Apr 2014

New package LOGICOIL with initial version 0.99.0
Package: LOGICOIL
Type: Package
Version: 0.99.0
Date: 2014-04-12
Title: LOGICOIL: multi-state prediction of coiled-coil oligomeric state.
Author: Thomas L. Vincent , Peter J. Green and Derek N. Woolfson
Maintainer: Thomas L. Vincent
Depends: R (>= 2.12), nnet
LazyData: true
ZipData: no
License: GPL (>= 2)
Description: This package contains the functions necessary to run the LOGICOIL algorithm. LOGICOIL can be used to differentiate between antiparallel dimers, parallel dimers, trimers and higher-order coiled-coil sequence. By covering >90 percent of the known coiled-coil structures, LOGICOIL is a net improvement compared with other existing methods, which achieve a predictive coverage of around 31 percent of this population. As such, LOGICOIL is particularly useful for researchers looking to characterize novel coiled-coil sequences or studying coiled-coil containing protein assemblies. It may also be used to assist in the structural characterization of synthetic coiled-coil sequences.
Repository: CRAN
URL: http://coiledcoils.chm.bris.ac.uk/LOGICOIL
Packaged: 2014-04-13 21:36:51 UTC; ThomasVincent
NeedsCompilation: no
Date/Publication: 2014-04-14 00:04:00

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New package freqweights with initial version 0.0.1
Package: freqweights
Type: Package
Title: Working with frequency tables
Version: 0.0.1
Date: 2014-04-03
Author: Emilio Torres-Manzanera
Maintainer: Emilio Torres-Manzanera
Description: The frequency of a particular data value is the number of times it occurs. A frequency table is a table of values with their corresponding frequencies. Frequency weights are integer numbers that indicate how many cases each case represents. This package provides some functions to work with such type of collected data.
License: GPL-3
Imports: plyr, data.table, dplyr, biglm, fastcluster
Suggests: MASS, hflights, cluster, ggplot2
Packaged: 2014-04-13 00:49:45 UTC; emilio
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-14 00:05:17

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New package FisHiCal with initial version 1.0
Package: FisHiCal
Type: Package
Title: Iterative FISH-based Calibration of Hi-C Data
Version: 1.0
Date: 2014-04-09
Author: Yoli Shavit, Fiona Kathryn Hamey and Pietro Lio'
Maintainer: Yoli Shavit
Description: FisHiCal integrates Hi-C and FISH data, offering a modular and easy-to-use tool for chromosomal spatial analysis.
License: GPL
Depends: R (>= 3.0.2), igraph, RcppArmadillo (>= 0.4.100.2.1)
Suggests: rgl
LinkingTo: Rcpp (>= 0.11.1), RcppArmadillo (>= 0.4.100.2.1)
Packaged: 2014-04-13 18:55:42 UTC; ys388
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-13 23:26:01

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New package FGSG with initial version 1.0
Package: FGSG
Title: Feature grouping and selection over an undirected graph
Version: 1.0
Author: Xiaotong Shen, Yiwen Sun, Julie Langou
Maintainer: Yiwen Sun
Description: FGSG package implements algorithms for feature grouping and selection over an undirected graph.
License: GPL-2
Note: The header file blaswrap.h, f2c.h and fgsg.h are from the VisualStudio library created by Julie Langou.
Packaged: 2014-04-13 17:25:11 UTC; sunxx847
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-13 23:04:06

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New package anominate with initial version 0.3
Package: anominate
Type: Package
Title: alpha-NOMINATE Ideal Point Estimator
Version: 0.3
Date: 2014-04-11
Author: Christopher Hare , Jeffrey Lewis , Keith Poole , Howard Rosenthal , Royce Carroll , James Lo
Maintainer: Christopher Hare
Depends: wnominate, oc, pscl, MCMCpack
Description: Fits ideal point model described in Carroll, Lewis, Lo, Poole and Rosenthal, "The Structure of Utility in Models of Spatial Voting," American Journal of Political Science 57(4): 1008--1028.
License: GPL-2
URL: http://www.voteview.com/alphanominate.asp
Packaged: 2014-04-13 01:45:17 UTC; Christopher
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-13 19:57:16

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New package helsinki with initial version 0.9.12
Package: helsinki
Type: Package
Title: Helsinki open data R tools
Version: 0.9.12
Date: 2014-04-13
Author: Juuso Parkkinen, Leo Lahti, Joona Lehtomaki
Maintainer: Juuso Parkkinen
Description: Tools for accessing various open data sources in the Helsinki region in Finland. Current data sources include the Real Estate Department and the Environmental Services Authority.
License: BSD_2_clause + file LICENSE
Depends: R (>= 3.0.1), rjson, RCurl, maptools, utils
URL: http://ropengov.github.com/helsinki
LazyLoad: yes
Packaged: 2014-04-13 07:32:03 UTC; juusoparkkinen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-13 16:05:54

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Sat, 12 Apr 2014

New package hasseDiagram with initial version 0.1
Package: hasseDiagram
Type: Package
Title: Drawing Hasse diagram
Version: 0.1
Date: 2014-02-13
Author: Krzysztof Ciomek
Maintainer: Krzysztof Ciomek
Depends: Rgraphviz (>= 2.6.0), grid (>= 3.0.2)
Description: Drawing Hasse diagram - visualization of transitive reduction of a finite partially ordered set.
License: MIT + file LICENSE
Packaged: 2014-04-12 10:09:02 UTC; Krzysztof
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-12 23:27:47

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New package EntropyEstimation with initial version 0.1
Package: EntropyEstimation
Type: Package
Title: Tools for the estimation of entropy and related quantities.
Version: 0.1
Date: 2014-04-06
Author: Lijuan Cao and Michael Grabchak
Maintainer: Michael Grabchak
Description: This package contains methods for the estimation of Shannon's entropy, variants of Renyi's entropy, mutual information, and Kullback-Leibler divergence. The estimators used have a bias that decays exponentially fast.
License: GPL (>= 3)
URL: http://math2.uncc.edu/~mgrabcha/research.html
Packaged: 2014-04-12 04:06:04 UTC; fionacao
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-13 00:34:45

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Fri, 11 Apr 2014

New package rorutadis with initial version 0.1.1
Package: rorutadis
Type: Package
Title: Robust Ordinal Regression UTADIS
Version: 0.1.1
Date: 2014-04-10
Author: Krzysztof Ciomek
Maintainer: Krzysztof Ciomek
URL: https://github.com/kciomek/rorutadis/
Depends: Rglpk (>= 0.5-1), ggplot2 (>= 0.9.3.1), gridExtra (>= 0.9.1)
Description: Implementation of Robust Ordinal Regression for value-based sorting with some extensions and additional tools. It is a novel Multiple-Criteria Decision Aiding (MCDA) framework.
License: GPL-3
Suggests: testthat (>= 0.7.1)
Packaged: 2014-04-11 09:47:35 UTC; Krzysztof
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-11 22:44:27

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New package gRapfa with initial version 1.0
Package: gRapfa
Type: Package
Title: Acyclic Probabilistic Finite Automata
Version: 1.0
Date: 2014-04-10
Author: Smitha Ankinakatte and David Edwards
Maintainer: Smitha Ankinakatte
Description: gRapfa is for modelling discrete longitudinal data using acyclic probabilistic finite automata (APFA). The package contains functions for constructing APFA models from a given data using penalized likelihood methods. For graphical display of APFA models, gRapfa depends on 'igraph package'. gRapfa also contains an interface function to Beagle software that implements an efficient model selection algorithm.
License: GPL (>= 2)
Depends: R (>= 3.0.2), igraph
Packaged: 2014-04-11 12:02:26 UTC; SMAA
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-11 22:47:57

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New package CircE with initial version 1.0
Package: CircE
Version: 1.0
Date: 2014/3/4
Title: Circumplex models Estimation
Author: Michele Grassi
Maintainer: Michele Grassi
Depends: R (>= 1.6.0), stats
Description: This package contains functions for fitting circumplex structural models for correlation matrices (with negative correlation) by the method of maximum likelihood.
License: GPL (>= 2)
LazyLoad: true
Packaged: 2014-04-11 16:11:21 UTC; michelegrassi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-11 22:52:57

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New package Rcpp11 with initial version 3.1.0
Package: Rcpp11
Title: R and C++11
Version: 3.1.0
Date: 2014-04-10
Authors@R: c( person("Romain", "Francois", role = c("aut", "cre"), email = "romain@r-enthusiasts.com"), person("Kevin", "Ushey", role = "aut", email = "kevinushey@gmail.com"), person("John", "Chambers", role = "ctb", email = "jmc@r-project.org") )
Description: R and C++11
Depends: R (>= 3.1.0)
License: MIT + file LICENSE
SystemRequirements: C++11
Packaged: 2014-04-10 13:08:01 UTC; romain
Author: Romain Francois [aut, cre], Kevin Ushey [aut], John Chambers [ctb]
Maintainer: Romain Francois
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-11 10:46:36

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New package rvTDT with initial version 1.0
Package: rvTDT
Type: Package
Title: population control weighted rare-variants TDT
Version: 1.0
Date: 2014-04-07
Author: Yu Jiang, Andrew S. Allen
Maintainer: Yu Jiang
Description: Used to compute population controls weighted rare variants transmission distortion test
License: GPL-3
Depends: CompQuadForm (>= 1.4.1)
Packaged: 2014-04-10 20:16:07 UTC; yujiang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-11 07:52:45

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New package extWeibQuant with initial version 1.0
Package: extWeibQuant
Type: Package
Title: Estimate the lower extreme quantile with the censored Weibull MLE and censored Weibull Mixture
Version: 1.0
Date: 2014-04-09
Author: Yang (Seagle) Liu
Maintainer: Yang (Seagle) Liu
Description: This package implements the subjectively censored Weibull MLE and censored Weibull mixture for the lower quantile estimation. It also includes functions to evaluation the standard error of the resulting quantile estimates. Also, the methods here can be used to fit the Weibull or Weibull mixture for the Type-I or Type-II right censored data.
License: GPL (>= 2)
Packaged: 2014-04-10 21:33:42 UTC; User
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-11 07:52:38

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Thu, 10 Apr 2014

New package PSMix with initial version 1.1.1
Package: PSMix
Type: Package
Title: Population structure inference using mixture model
Version: 1.1.1
Encoding: UTF-8
Authors@R: c(person(given = "Baolin", family = "Wu", role = c("aut","cph"),email = "baolin@umn.edu"), person(given = "Nianjun", family = "Liu", role = c("aut","cph"),email = "nliu@ms.soph.uab.edu"), person(given = "Hongyu", family = "Zhao", role = c("aut","cph"),email = "hongyu.zhao@yale.edu"), person(given = "Jose", family = "Gama", role = "cre",email = "jgama@abo.fi"))
Description: population structure inference using likelihood-based approach
URL: http://bioinformatics.med.yale.edu/PSMIX
License: GPL (>= 2)
Depends: R (>= 2.10)
Author: Baolin Wu [aut, cph], Nianjun Liu [aut, cph], Hongyu Zhao [aut, cph], Jose Gama [cre]
Maintainer: Jose Gama
Repository: CRAN
Repository/R-Forge/Project: psmix
Repository/R-Forge/Revision: 3
Repository/R-Forge/DateTimeStamp: 2014-04-10 09:54:12
Date/Publication: 2014-04-10 15:16:20
Packaged: 2014-04-10 10:15:20 UTC; rforge
NeedsCompilation: yes

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New package toaster with initial version 0.2.5
Package: toaster
Type: Package
Title: analytics and visualization with Aster Database
Version: 0.2.5
Author: Gregory Kanevsky
Maintainer: Gregory Kanevsky
Description: toaster (a.k.a 'to Aster') is a set of tools to perform in-database analytics with Teradata Aster Discovery Platform. toaster embraces simple approach by dividing tasks into 2 steps: compute in Aster - visualize and analyze in R. toaster `compute` functions use distributed, highly scalable, parallel SQL and map-reduce for processing of large data sets in Aster database. Then `create` functions visualize results with boxplots, scatterplots, histograms, heatmaps, word clouds, maps, or slope graphs. Advanced options such as faceting, coloring, labeling, and others are supported with most plots.
URL: https://grigory@bitbucket.org/grigory/toaster.git
SystemRequirements: Teradata Aster 5.1 or higher, Teradata Aster Analytical Foundation 5.10 or higher (5.11 or higher is recommended)
Depends: R (>= 2.14), RODBC (>= 1.3-9)
Suggests: testthat (>= 0.2), memoise
Imports: plyr (>= 1.8), reshape2 (>= 1.2.2), ggplot2 (>= 0.9.3.1), scales, RColorBrewer (>= 1.0-5), grid, wordcloud (>= 2.4), ggmap (>= 2.3)
License: GPL-2
Collate: 'toaster.R' 'misc.R' 'utils.R' 'computeCorrelations.R' 'computeHistogram.R' 'computeHeatmap.R' 'plotting.R' 'maps.R' 'showData.R' 'computeAggregates.R' 'computeBarchart.R' 'computeSample.R' 'computePercentiles.R' 'computeLm.R'
Packaged: 2014-04-09 23:04:29 UTC; gk186006
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-10 09:18:08

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New package edmr with initial version 0.6.3
Package: edmr
Type: Package
Title: Empirical differentially methylated regions calculation
Description: Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis optimization. It captures the regional methylation modification by taking the spatial distribution of CpGs into account for the enrichment DNA methylation sequencing data so as to optimize the definition of the empirical regions. Combined with the dependent adjustment for regional p-value combination and DMR annotation.
Version: 0.6.3
Authors@R: c(person(given="Sheng", family="Li", role=c("aut","cre", "cph"), email = "shelly1436@gmail.com"), person(given="Francine", family="Garrett-Bakelman", role="ctb"), person(family="Akalin", given="Altuna", role="ctb"), person(family="Zumbo", given="Paul", role="ctb"), person(family="Melnick", given="Ari", role="ctb"), person(family="Mason", given="Chris", role=c("ctb","ths")))
Maintainer: Sheng Li
Depends: R (>= 3.0.2)
Imports: GenomicRanges, IRanges, data.table, mixtools
License: MIT + file LICENSE
URL: https://github.com/ShengLi/edmr
LazyData: true
Collate: 'ACF.R' 'edmr.R' 'eDMR.sub.R' 'get.dist.cutoff.R' 'getDMR.R' 'getPeaks.R' 'helpers.R' 'myDiff.to.mixmdl.R' 'myDiffToDMR.R' 'plotCost.R' 'plotMdl1.R' 'filter.dmr.R' 'annotation.R' 'document_data.R'
Packaged: 2014-04-07 15:24:10 UTC; shl2018
Author: Sheng Li [aut, cre, cph], Francine Garrett-Bakelman [ctb], Altuna Akalin [ctb], Paul Zumbo [ctb], Ari Melnick [ctb], Chris Mason [ctb, ths]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-10 09:18:01

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New package CatDyn with initial version 1.0-5
Package: CatDyn
Type: Package
Title: Fishery Stock Assessment by Catch Dynamic Models
LazyLoad: yes
LazyData: yes
Version: 1.0-5
Date: 2014-04-07
Author: Ruben H. Roa-Ureta
Maintainer: Ruben H. Roa-Ureta
Depends: R (>= 3.0.0)
Imports: optimx (>= 2013.8.6), BB
Description: Using high-frequency or medium-frequency catch in biomass or numbers, fishing nominal effort, and mean body mass by time step, from one or two fishing fleets, estimate stock abundance, natural mortality rate, and fishing operational parameters. It includes methods for data organization, plotting standard exploratory and analytical plots, predictions, for 57 types of catch dynamics models of increasing complexity, and two distributions for the catch data.
License: GPL (>= 2)
Packaged: 2014-04-10 05:35:28 UTC; Rubin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-10 09:17:54

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Wed, 09 Apr 2014

New package NLSdata with initial version 0.9
Package: NLSdata
Version: 0.9
Date: 2014-04-9
Title: An R package for National Longitudinal Survey Analysis
Author: Ben Ogorek
Maintainer: Ben Ogorek
Imports: reshape2
Suggests: RUnit
Description: The National Longitudinal Surveys provide a wealth of sociological data. However, the export facilities provided by the Bureau of Labor Statistics result in a crude output format that requires a considerable time commitment from the analyst. The NLSdata package is a companion utility to the NLS Investigator that facilitates reading, interpreting and reshaping NLS data for a wide variety of sociological and longitudinal analyses.
License: GPL (>= 2)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-10 00:31:31

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New package GHQp with initial version 1.0
Package: GHQp
Type: Package
Title: Gauss Hermite Quadrature with pruning.
Version: 1.0
Date: 2014-03-04
Author: Freddy Hernandez Barajas
Maintainer: Freddy Hernandez Barajas
Description: The GHQ function can be used to obtain the quadrature points and weights to approximate an integral in two or more dimensions. This function uses the pruning approach to eliminate that points that do not contribute to the approximation of the integral and increases computational cost. The advantage to conducting this elimination of points is the decrease in the number of times that the function of interest is evaluated. This advantage is crucial in mixed models in which we must address several integrations within an iterative process to obtain model parameters.
License: GPL (>= 2)
Depends: R (>= 2.10), statmod
Suggests: scatterplot3d
Packaged: 2014-04-09 14:36:24 UTC; user
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-09 16:46:24

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New package cuttlefish.model with initial version 1.0
Package: cuttlefish.model
Version: 1.0
Date: 2013-12-13
Title: An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model
Author: Michael Gras and Jean-Paul Robin
Maintainer: Michael Gras
Depends: R (>= 3.0.0)
Type: Package
Description: This package can be used to standardize abundance indices using the delta-GLM method and to model the English Channel cuttlefish stock using a two-stage biomass model
License: GPL-3
LazyLoad: yes
Packaged: 2014-04-08 22:00:32 UTC; root
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-09 08:01:57

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Tue, 08 Apr 2014

New package Ecfun with initial version 0.1-0
Package: Ecfun
Version: 0.1-0
Date: 2013-10-13
Title: Functions for Ecdat
Author: Spencer Graves
Maintainer: Spencer Graves
Depends: R (>= 3.0.1)
Suggests: car, systemfit, sem, lmtest, sandwich, gdata, RCurl, XML, tis, Ecdat, fda
Description: Functions to update datasets in Ecdat and to create, manipulate, plot and analyze those and similar datasets.
LazyData: true
License: GPL (>= 2)
URL: http://www.r-project.org
Repository: CRAN
Repository/R-Forge/Project: ecdat
Repository/R-Forge/Revision: 157
Repository/R-Forge/DateTimeStamp: 2014-04-07 04:08:00
Date/Publication: 2014-04-08 15:25:29
Packaged: 2014-04-08 04:35:12 UTC; rforge
NeedsCompilation: no

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New package sitar with initial version 1.0
Package: sitar
Type: Package
Title: SITAR growth curve analysis
Version: 1.0
Date: 2013-09-22
Author: Tim Cole
Maintainer: Tim Cole
Description: Functions for fitting and plotting SITAR (SuperImposition by Translation And Rotation) growth curve models
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Depends: R (>= 3.0.0), nlme, splines
Suggests: quantreg
Packaged: 2014-04-07 22:18:05 UTC; timcole
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-08 11:07:26

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Mon, 07 Apr 2014

New package sotkanet with initial version 0.9.03
Package: sotkanet
Type: Package
Title: Sotkanet R Tools
Version: 0.9.03
Date: 2014-04-06
Author: Leo Lahti, Einari Happonen, Juuso Parkkinen, Joona Lehtomaki
Maintainer: Leo Lahti
Description: Sotkanet API R Tools
License: BSD_2_clause + file LICENSE
URL: https://github.com/ropengov/sotkanet
BugReports: https://github.com/ropengov/sotkanet/issues
Depends: R (>= 3.0.2), ggplot2, rjson
LazyLoad: yes
VignetteBuilder: knitr
Suggests: knitr
Packaged: 2014-04-07 15:11:51 UTC; antagomir
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-07 20:15:37

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New package NPS with initial version 1.0
Package: NPS
Type: Package
Title: Convenience functions and tests for working with the Net Promoter Score (NPS)
Version: 1.0
Date: 2014-04-07
Author: Brendan Rocks
Maintainer: Brendan Rocks
Description: This package provides a few small functions to make working with survey data in an NPS context easier. Specifically, data transformation methods, some methods for examining the statistical properties of the NPS, such as its variance and standard errors, and some simple inferential testing procedures.
License: GPL (>= 2)
Packaged: 2014-04-07 12:43:18 UTC; brendan.rocks
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-07 14:56:13

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New package spectral.methods with initial version 0.7.2.124
Package: spectral.methods
Title: Singular Spectrum Analysis (SSA) tools for time series analysis
Version: 0.7.2.124
Date: 2014-01-01
Author: Jannis v. Buttlar
Maintainer: Jannis v. Buttlar
Imports: Rssa, raster, nnet, abind, RNetCDF, ncdf.tools, foreach, JBTools, parallel, DistributionUtils, RColorBrewer
Description: This package contains some implementations of Singular Spectrum Analysis (SSA) for the gapfilling (gapfillSSA() ) and spectral decomposition (filterTseriesSSA() ) of time series. It contains the code used by Buttlar et. al. (2014), Nonlinear Processes in Geophysics (gapfillNcdf). In addition, the iterative SSA gapfilling of Kondrashov and Ghil (2006) is implemented. All SSA calculations are done via the truncated and fast SSA algorithm of Korobeneykov (2010) (package Rssa).
License: GPL-2
LazyLoad: yes
Depends: R (>= 2.10.0)
Packaged: 2014-04-07 09:47:27 UTC; jbuttlar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-07 13:02:37

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New package TreatmentSelection with initial version 1.1.1
Package: TreatmentSelection
Type: Package
Title: Evaluate Treatment Selection Biomarkers
Version: 1.1.1
Date: 2014-04-04
Author: Marshall Brown and Holly Janes
Maintainer: Marshall Brown
Description: Evaluate the performance of markers used to guide treatment selection decisions. Package includes functions to plot risk curves, evaluate marker performance, assess model calibration, and compare markers.
URL: http://mdbrown.github.io/TreatmentSelection/
License: GPL-2
Imports: ggplot2, grid
Packaged: 2014-04-07 02:13:12 UTC; mdbrown
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-07 07:46:23

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New package Rsomoclu with initial version 1.3
Package: Rsomoclu
Version: 1.3
Date: 2014-03-16
Title: R package for somoclu
Depends: Rcpp
Imports:
Suggests:
Authors@R: c(person(given = "Peter", family = "Wittek", role = c("aut"), email = ""), person(given = "Shichao", family = "Gao", role = c("cre"), email = "xgdgsc@gmail.com"))
Description: Somoclu is a cluster-oriented implementation of self-organizing maps. It relies on MPI for distributing the workload, and it can be accelerated by CUDA on a GPU cluster. A sparse kernel is also included, which is useful for training maps on vector spaces generated in text mining processes.
URL: http://peterwittek.github.io/somoclu/
BugReports: https://github.com/peterwittek/somoclu/issues
License: GPL-3
Packaged: 2014-04-07 04:21:19 UTC; gsc
Author: Peter Wittek [aut], Shichao Gao [cre]
Maintainer: Shichao Gao
NeedsCompilation: yes
Repository: CRAN
SystemRequirements: GNU make
Date/Publication: 2014-04-07 07:46:29

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Sun, 06 Apr 2014

New package acss with initial version 0.1-1
Package: acss
Type: Package
Title: Algorithmic Complexity for Short Strings
Version: 0.1-1
Date: 2014-04-05
Authors@R: c( person("Nicolas", "Gauvrit", role = "aut"), person("Fernando", "Soler Toscano", role = "aut"), person("Hector", "Zenil", role = "aut"), person("Henrik", "Singmann", email = "singmann@gmail.com", role = c("aut", "cre")))
Imports: zoo
Depends: R (>= 2.15.0), acss.data
Description: Main functionality is to provide the algorithmic complexity for short strings, an approximation of the Kolmogorov Complexity of a short string using the coding theorem method (see ?acss). The database containing the complexity is provided in the data only package acss.data, this package provides functions accessing the data such as prob_random returning the probability that a given string was produced by a random process. In addition, two traditional (but problematic) measures of complexity are also provided: entropy and change complexity.
URL: http://complexitycalculator.com/methodology.html
License: GPL (>= 2)
Packaged: 2014-04-05 21:15:19 UTC; Henrik
Author: Nicolas Gauvrit [aut], Fernando Soler Toscano [aut], Hector Zenil [aut], Henrik Singmann [aut, cre]
Maintainer: Henrik Singmann
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-06 07:26:37

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Sat, 05 Apr 2014

New package isotonic.pen with initial version 1.0
Package: isotonic.pen
Type: Package
Title: Penalized Isotonic Regression in one and two dimensions
Version: 1.0
Date: 2014-04-04
Author: Mary C Meyer, Jiwen Wu, and Jean D. Opsomer
Maintainer: Mary Meyer
Description: Given a response y and a one- or two-dimensional predictor, the isotonic regression estimator is calculated with the usual orderings.
License: GPL-2 | GPL-3
Depends: graphics, grDevices, stats, utils, coneproj, Matrix
Packaged: 2014-04-04 22:31:54 UTC; marycmeyer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-05 19:08:34

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New package acss.data with initial version 1.0
Package: acss.data
Type: Package
Title: Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method)
Version: 1.0
Date: 2014-04-02
Authors@R: c( person("Fernando", "Soler Toscano", role = "aut"), person("Nicolas", "Gauvrit", role = "aut"), person("Hector", "Zenil", role = "aut"), person("Henrik", "Singmann", email = "singmann@gmail.com", role = c("aut", "cre")))
Depends: R (>= 2.10)
Description: Data only package providing the algorithmic complexity of short strings, computed using the coding theorem method. For a given set of symbols in a string, all possible or a large number of random samples of Turing machines (TM) with a given number of states (e.g., 5) and number of symbols corresponding to the number of symbols in the strings were simulated until they reached a halting state or failed to end. This package contains data on 4.5 million strings from length 1 to 12 simulated on TMs with 2, 4, 5, 6, and 9 symbols. The complexity of the string corresponds to the distribution of the halting states of the TMs.
URL: http://complexitycalculator.com/methodology.html
License: GPL (>= 2)
Packaged: 2014-04-05 09:16:08 UTC; Henrik
Author: Fernando Soler Toscano [aut], Nicolas Gauvrit [aut], Hector Zenil [aut], Henrik Singmann [aut, cre]
Maintainer: Henrik Singmann
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-05 18:54:45

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New package nonrandom with initial version 1.42
Package: nonrandom
Type: Package
Title: Stratification and matching by the propensity score
Version: 1.42
Date: 2014-04-04
Author: Susanne Stampf [cre, aut]
Authors@R: c(person("Susanne","Stampf", role=c("cre","aut"), email = "susanne.stampf@usb.ch"))
Maintainer: Susanne Stampf
Description: This package offers a comprehensive data analysis if stratification and matching by the propensity score is done. Several functions are implemented, starting from the selection of the propensity score model up to estimating propensity score based treatment or exposure effects. All functions can be applied separately as well as combined.
Depends: lme4
Suggests: colorspace
License: GPL
LazyLoad: yes
LazyData: yes
BuildVignettes: yes
NeedsCompilation: no
Packaged: 2014-04-04 08:39:52 UTC; jo
Repository: CRAN
Date/Publication: 2014-04-05 08:06:21

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Fri, 04 Apr 2014

New package palinsol with initial version 0.92
Package: palinsol
Version: 0.92
Date: 2013-01-30
Title: Insolation for palaeoclimate studies
Author: Michel Crucifix
Maintainer: Michel Crucifix
Depends: R (>= 2.10), stats, gsl
Description: R package to compute Incoming Solar Radiation (insolation) for paleoclimate studies. Features three solutions: BER78 (Berger, 1978), BER90 (Berger and Loutre, 1991) and LA04 (Laskar et al. 2004). Computes daily-mean, season-averaged and annual means for all latitudes.
License: file LICENSE
URL: https://bitbucket.org/mcrucifix/insol
Packaged: 2014-04-04 14:05:49 UTC; crucifix
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 17:34:38

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New package ncdf.tools with initial version 0.7.1.290
Package: ncdf.tools
Title: Easier ncdf file handling
Version: 0.7.1.290
Date: 2014-01-01
Author: Jannis v. Buttlar
Maintainer: Jannis v. Buttlar
Imports: RNetCDF, chron, foreach, doMC, abind, plotrix, raster, RColorBrewer, JBTools
Description: Set of tools to simplify the handling of ncdf files with the RNetCDF package. Most functions are wrappers for basic functions from RNetCDF to easily run combinations of these functions for frequently encountered tasks.
License: GPL-2
LazyLoad: yesf
Depends: R (>= 2.10.0)
Packaged: 2014-04-04 13:13:29 UTC; jbuttlar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 16:07:58

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New package ERP with initial version 1.0.1
Package: ERP
Type: Package
Title: Significance analysis of Event-Related Potentials data
Version: 1.0.1
Date: 2014-04-01
Author: David Causeur (Agrocampus, Rennes, France) and Ching-Fan Sheu (National Cheng-Kung University, Tainan, Taiwan)
Maintainer: David Causeur
Description: The functions provided in the package ERP are designed for the significance analysis of ERP data in a linear model framework. The possible procedures are either the collection of FDR or FWER controlling methods available in the generic function p.adjust, the same collection combined with a factor modeling of the time dependence among tests (see Sheu, Perthame, Lee and Causeur, 2014) and the Guthrie and Buchwald (1991) test.
License: GPL (>= 2)
Depends: fdrtool, mnormt
Packaged: 2014-04-04 13:27:47 UTC; David Causeur
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 16:07:09

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New package apmsWAPP with initial version 1.0
Package: apmsWAPP
Type: Package
Title: Pre- and Postprocessing for AP-MS data analysis based on spectral counts
Version: 1.0
Date: 2013-03-14
Author: Martina Fischer
Maintainer: Martina Fischer
Description: apmsWAPP provides a complete workflow for the analysis of AP-MS data (replicate single-bait purifications including negative controls) based on spectral counts. It comprises pre-processing, scoring and postprocessing of protein interactions. A final list of interaction candidates is reported: it provides a ranking of the candidates according to their p-values which allow estimating the number of false-positive interactions.
Imports: genefilter, Biobase, seqinr, multtest, gtools, edgeR, DESeq, aroma.light
License: LGPL-3
LazyLoad: yes
SystemRequirements: SAINT_v2.3.4
Packaged: 2014-04-04 09:51:38 UTC; fischerm
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 12:38:28

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New package neuroim with initial version 0.0.3
Package: neuroim
Imports: Matrix, yaImpute,
License: GPL (>= 2)
Maintainer: Bradley Buchsbaum
Title: neuroim: R software for reading, writing and representing brain imaging data.
Type: Package
Author: Bradley R. Buchsbaum
Description: neuroim is a collection of data structures that represent volumetric brain imaging data. The focus is on basic data handling for 3D and 4D neuroimaging data. In addition, there are function to read and write ANALYZE7.5 and NIFTI files and limited support for reading AFNI files.
Version: 0.0.3
Date: 2014-04-01
Depends: R (>= 3.0.0), stringr, hash, iterators, abind, methods
Collate: 'AFNI_IO.R' 'AllGeneric.R' 'AllClass.R' 'Axis.R' 'BinaryIO.R' 'BrainData.R' 'common.R' 'NIFTI_IO.R' 'BrainFileDescriptor.R' 'BrainMetaInfo.R' 'BrainRegion3D.R' 'BrainSlice.R' 'BrainSpace.R' 'SparseBrainVector.R' 'BrainVector.R' 'BrainVolume.R' 'Display.R' 'IndexLookupVolume.R' 'Ops.R' 'conncomp.R'
Packaged: 2014-04-04 00:40:02 UTC; bbuchsbaum
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 08:13:51

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Thu, 03 Apr 2014

New package bigsplines with initial version 1.0-0
Package: bigsplines
Type: Package
Title: Big Splines (smoothing splines for large samples)
Version: 1.0-0
Date: 2014-04-03
Author: Nathaniel E. Helwig
Maintainer: Nathaniel E. Helwig
Description: Fits smoothing spline regression models using scalable algorithms designed for large samples. Five marginal spline types are supported: cubic, different cubic, cubic periodic, cubic thin-plate, and nominal. Parametric predictors are also supported.
License: GPL (>= 2)
Packaged: 2014-04-03 05:01:17 UTC; Nate
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-04-04 01:27:18

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New package aRpsDCA with initial version 1.0.0
Package: aRpsDCA
Version: 1.0.0
Date: 2014-04-03
Title: Arps Decline Curve Analysis in R
Authors@R: c(person("Derrick", "Turk", role = c("aut", "cre", "cph"), email = "dwt@terminusdatascience.com"))
Description: Functions for Arps decline-curve analysis on oil and gas data. Includes exponential, hyperbolic, harmonic, and hyperbolic-to-exponential models as well as the preceding with initial curtailment. Functions included for computing rate, cumulative production, instantaneous decline, EUR, time to economic limit, and performing least-squares best fits.
License: LGPL-2.1
URL: https://github.com/derrickturk/aRpsDCA
BugReports: https://github.com/derrickturk/aRpsDCA/issues
Packaged: 2014-04-03 21:44:35 UTC; derrick
Author: Derrick Turk [aut, cre, cph]
Maintainer: Derrick Turk
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-04 01:20:41

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New package rivervis with initial version 0.38.2
Package: rivervis
Type: Package
Title: River Visualisation Tool
Version: 0.38.2
Date: 2014-04-03
Author: Feng Mao , Yichuan Shi , and Keith Richards
Maintainer: Feng Mao
Description: Visualisation for quantitative and qualitative riverine data
License: GPL (>= 2)
Encoding: UTF-8
Imports: graphics
Repository: CRAN
Packaged: 2014-04-03 16:53:35 UTC; Fujitsu
NeedsCompilation: no
Date/Publication: 2014-04-03 20:20:38

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New package rDVR with initial version 0.1.1
Package: rDVR
Title: The rDVR package allows you to start stop and save a video server from within R.
Version: 0.1.1
Authors@R: "John Harrison [aut, cre]"
Description: The rDVR package allows you to start stop and save a video server from within R. It does this by way of a REST interface to a JAVA service. The jar binary relies on the screen recorder included in the Monte Media Library (CC BY 3.0 licence) developed by Werner Randelshofer (http://http://www.randelshofer.ch/monte/). The REST interface was modified from https://github.com/tuenti/VideoRecorderService which has an Apache licence.
URL: http://johndharrison.github.io/rDVR/
BugReports: https://github.com/johndharrison/rDVR/issues
Imports: methods,RCurl
Depends: R (>= 3.0.0)
Suggests: knitr,RSelenium
VignetteBuilder: knitr
License: AGPL-3
LazyData: yes
Packaged: 2014-04-03 16:53:11 UTC; john
Author: "John Harrison" [aut, cre]
Maintainer: "John Harrison"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 20:20:36

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New package findpython with initial version 1.0.1
Package: findpython
Type: Package
Title: Python tools to find an acceptable python binary
Version: 1.0.1
Author: Trevor L Davis and Paul Gilbert.
Maintainer: Trevor L Davis
URL: https://github.com/trevorld/findpython
BugReports: https://github.com/trevorld/findpython/issues
Description: Package designed to find an acceptable python binary.
Suggests: testthat
License: MIT + file LICENSE
Collate: 'find_python_cmd.r'
Packaged: 2014-04-03 17:33:07 UTC; trevorld
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 20:20:34

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New package ConnMatTools with initial version 0.1.4
Package: ConnMatTools
Type: Package
Title: Tools for working with connectivity matrices
Version: 0.1.4
Date: 2013-07-09
Author: Marco Andrello
Maintainer: David M. Kaplan
Description: ConnMatTools collects several different methods for analyzing and working with connectivity matrices in R. Though primarily oriented towards marine larval dispersal, many of the methods are general and useful for terrestrial systems as well.
URL: https://github.com/dmkaplan2000/ConnMatTools.git
Suggests: igraph
Collate: 'ConnMatTools.R' 'eigs.R' 'Jacobi_EPT_reserve_selection.R' 'datasets.R' 'dpr_model.R' 'retentionStats.R' 'jacobi_etal_2012.R'
License: GPL (>= 2)
Packaged: 2014-04-03 12:29:41 UTC; dmk
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 18:30:23

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New package nlreg with initial version 1.2-2
Package: nlreg
Version: 1.2-2
Date: 2014-03-31
Title: Higher Order Inference for Nonlinear Heteroscedastic Models
Author: S original by Alessandra R. Brazzale and Ruggero Bellio . R port by Alessandra R. Brazzale , following earlier work by Douglas Bates.
Maintainer: Alessandra R. Brazzale
URL: http://www.r-project.org, http://statwww.epfl.ch/AA/
Description: Likelihood inference based on higher order approximations for nonlinear models with possibly non constant variance
Depends: R (>= 3.0.0), statmod, survival
Suggests: boot, cond, csampling, marg
License: GPL (>= 2) | file LICENCE
LazyLoad: yes
LazyData: yes
Packaged: 2014-04-03 08:32:56 UTC; brazzale
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 14:00:52

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New package marg with initial version 1.2-2
Package: marg
Version: 1.2-2
Date: 2014-03-31
Title: Approximate marginal inference for regression-scale models
Author: S original by Alessandra R. Brazzale . R port by Alessandra R. Brazzale , following earlier work by Douglas Bates.
Maintainer: Alessandra R. Brazzale
Depends: R (>= 3.0.0), statmod, survival
Suggests: boot, cond, csampling, nlreg
Description: Likelihood inference based on higher order approximations for linear nonnormal regression models
License: GPL (>= 2) | file LICENCE
URL: http://www.r-project.org, http://statwww.epfl.ch/AA/
LazyLoad: yes
LazyData: yes
Packaged: 2014-04-03 08:30:00 UTC; brazzale
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 14:00:49

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New package JBTools with initial version 0.7.2.6
Package: JBTools
Title: JBs tools and helper functions.
Version: 0.7.2.6
Date: 2014-01-01
Author: Jannis v. Buttlar
Maintainer: Jannis v. Buttlar
Description: Collection of several tools and helper functions used across the other packages of J. Buttlar (ncdf.tools and spectral.methods).
Imports: foreach, parallel, gplots, colorspace, plotrix
Suggests: doMC
License: GPL-2
LazyLoad: yes
Depends: R (>= 2.14.0)
Packaged: 2014-04-03 09:53:01 UTC; jbuttlar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 14:00:41

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New package csampling with initial version 1.2-2
Package: csampling
Version: 1.2-2
Date: 2014-03-31
Title: Functions for Conditional Simulation in Regression-Scale Models
Author: S original by Alessandra R. Brazzale . R port by Alessandra R. Brazzale .
Maintainer: Alessandra R. Brazzale
Depends: R (>= 3.0.0), marg, statmod, survival
Description: Monte Carlo conditional inference for the parameters of a linear nonnormal regression model
License: GPL (>= 2) | file LICENCE
URL: http://www.r-project.org, http://statwww.epfl.ch/AA/
LazyLoad: yes
LazyData: yes
Packaged: 2014-04-03 08:28:05 UTC; brazzale
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 14:00:47

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New package cond with initial version 1.2-2
Package: cond
Version: 1.2-2
Date: 2014-03-31
Title: Approximate conditional inference for logistic and loglinear models
Author: S original by Alessandra R. Brazzale . R port by Alessandra R. Brazzale , following earlier work by Douglas Bates.
Maintainer: Alessandra R. Brazzale
Depends: R (>= 3.0.0), statmod, survival
Suggests: boot, csampling, marg, nlreg
Description: Higher order likelihood-based inference for logistic and loglinear models
License: GPL (>= 2) | file LICENCE
URL: http://www.r-project.org, http://statwww.epfl.ch/AA/
LazyLoad: yes
LazyData: yes
Packaged: 2014-04-03 08:26:33 UTC; brazzale
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 14:00:45

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New package Methplot with initial version 1.0
Package: Methplot
Type: Package
Title: Visualize the methylation patterns
Version: 1.0
Date: 2014-03-10
Author: Xin Yang
Maintainer: Xin Yang
Imports: ggplot2, grid, reshape
Description: It plots the output from Methpup (https://github.com/XinYang6699/Methpup)
License: GPL (>= 2)
LazyData: FALSE
Packaged: 2014-04-02 15:21:30 UTC; xin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 12:04:00

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New package survivalMPL with initial version 0.1.0
Package: survivalMPL
Title: Penalised Maximum Likelihood for Survival Analysis Models
Version: 0.1.0
Date: 2014-04-03
Author: Dominique-Laurent Couturier, Jun Ma, Stephane Heritier.
Maintainer: Dominique-Laurent Couturier
Description: Estimate the regression coefficients and the baseline hazard of proportional hazard Cox models using maximum penalised likelihood. A 'non-parametric' smooth estimate of the baseline hazard function is provided.
Depends: survival
NeedsCompilation: yes
License: LGPL (>= 2)
Packaged: 2014-04-03 03:45:10 UTC; research
Repository: CRAN
Date/Publication: 2014-04-03 06:01:58

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New package RankResponse with initial version 3.0.3
Package: RankResponse
Type: Package
Title: Ranking Responses in a Single Response Question or a Multiple Response Question
Version: 3.0.3
Date: 2014-03-18
Author: Hsiuying Wang, Yu-Jun Lin
Maintainer: Hsiuying Wang
Description: Methods for ranking responses of a single response question or a multiple response question
License: GPL-2
Packaged: 2014-04-02 16:45:17 UTC; Much
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 05:57:23

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Wed, 02 Apr 2014

New package LSAfun with initial version 0.1
Package: LSAfun
Type: Package
Title: Applied Latent Semantic Analysis (LSA) functions
Description: This package provides functions that allow for convenient working with Latent Semantic Analysis. For actually building an LSA space, use the package 'lsa'.
Version: 0.1
Date: 2014-02-18
Authors@R: c(person("Fritz Guenther", role = c("aut","cre"), email ="fritz.guenther@uni-tuebingen.de"))
Depends: R (>= 2.15.3), lsa, rgl
License: GPL (>= 2)
LazyData: true
Packaged: 2014-04-02 22:57:33 UTC; zxmje28
Author: Fritz Guenther [aut, cre]
Maintainer: Fritz Guenther
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-03 01:02:34

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New package fifer with initial version 1.0
Package: fifer
Title: A collection of miscellaneous functions.
Description: A collection of functions that assist in data manipulation analysis and plotting.
Version: 1.0
Author: Dustin Fife
Maintainer: Dustin Fife
License: GPL-2
Depends: xtable, MASS
Collate: 'polarCoord.R' 'stratified.R' 'univariate.tests.R' 'string.to.color.R' 'spearman.plot.R' 'r.crit.R' 'boxcoxR.R' 'missing.vals.R' 'make.formula.R' 'scaleB.R' 'par1.R' 'make.null.R' 'demographics.R' 'chisqPostHoc.R' 'cor2cov.R' 'random.correlation.R' 'scale.it.R' 'densityPlotR.R' 'excelMatch.R' 'prism.plots.R' 'hash.R' 'printx.R' 'roxtemp.R' 'intersperse.R' 'subsetString.R' 'auto.layout.R' 'contents.R' 'mvrnorm.R' 'kruskalmc.R'
Packaged: 2014-04-02 16:19:55 UTC; fifed
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-02 19:17:23

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New package fat2Lpoly with initial version 1.0.2
Package: fat2Lpoly
Type: Package
Title: Two-locus Family-based Association Test with Polytomic Outcome
Version: 1.0.2
Date: 2014-04-02
Author: Alexandre BUREAU and Jordie Croteau
Maintainer: Alexandre BUREAU
Depends: R (>= 2.10), kinship2, multgee
Description: Performs family-based association tests with a polytomous outcome under 2-locus and 1-locus models defined by some design matrix.
License: GPL
LazyLoad: yes
URL: http://www.crulrg.ulaval.ca/pages_perso_chercheurs/bureau_a/
Packaged: 2014-04-02 18:25:36 UTC; alexandrebureau
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-02 20:46:07

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New package ssym with initial version 1.0
Package: ssym
Type: Package
Title: Fitting Semiparametric Symmetric Regression Models
Version: 1.0
Date: 2014-03-30
Author: Luis Hernando Vanegas and Gilberto A. Paula
Maintainer: Luis Hernando Vanegas
Description: This package allows to fit a semiparametric regression model suitable for data set analysis in which the conditional distribution of the response is symmetric and continuous.
License: GPL-2 | GPL-3
Depends: GIGrvg, numDeriv, gsl, normalp
Suggests: NISTnls
Packaged: 2014-04-02 12:15:11 UTC; Usuario
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-04-02 16:20:48

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