Sun, 28 Aug 2016

New package XR with initial version 0.7
Package: XR
Type: Package
Title: A Structure for Interfaces from R
Version: 0.7
Date: 2016-08-27
Author: John M. Chambers
Maintainer: John Chambers <jmc@r-project.org>
Description: Support for interfaces from R to other languages, built around a class for evaluators and a combination of functions, classes and methods for communication. Will be used through a specific language interface package. Described in the book "Extending R".
License: GPL (>= 2)
Imports: methods, utils, jsonlite
NeedsCompilation: no
Packaged: 2016-08-27 21:00:35 UTC; jmc
RoxygenNote: 5.0.1
Repository: CRAN
Date/Publication: 2016-08-28 07:35:28

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Sat, 27 Aug 2016

New package Rtextrankr with initial version 1.0.0
Package: Rtextrankr
Type: Package
Title: TextRank for Korean
Version: 1.0.0
Date: 2016-8-25
Author: Junghoon Seo
Maintainer: Junghoon Seo <s3213403@gmail.com>
Description: Reorder sentences for Korean text using TextRank algorithm.
License: GPL-3
URL: https://github.com/mikigom/Rtextrankr
Depends: R (>= 3.0.2), KoNLP (>= 0.76.9)
Imports: igraph (>= 1.0.1), sets (>= 1.0-16), stringi (>= 1.1.0)
Collate: 'Rtextrankr.R'
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-27 20:22:11 UTC; mikigom
Repository: CRAN
Date/Publication: 2016-08-27 23:06:16

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New package ndjson with initial version 0.2.0
Package: ndjson
Type: Package
Title: Wicked-Fast Streaming 'JSON' ('ndjson') Reader
Version: 0.2.0
Date: 2016-08-27
Author: Bob Rudis (@hrbrmstr), Niels Lohmann (C++ json parser), Deepak Bandyopadhyay (C++ gzstream), Lutz Kettner (C++ gzstream)
Maintainer: Bob Rudis <bob@rud.is>
Description: Streaming 'JSON' ('ndjson') has one 'JSON' record per-line and many modern 'ndjson' files contain large numbers of records. These constructs may not be columnar in nature, but it's often useful to read in these files and "flatten" the structure out to work in an R data.frame-like context. Functions are provided that make it possible to read in plain 'ndjson' files or compressed ('gz') 'ndjson' files and either validate the format of the records or create "flat" data.table ('tbl_dt') structures from them.
URL: http://gitlab.com/hrbrmstr/ndjson
BugReports: https://gitlab.com/hrbrmstr/ndjson/issues
SystemRequirements: zlib, C++11
NeedsCompilation: yes
License: AGPL
Suggests: testthat
Depends: R (>= 3.2.0)
Imports: Rcpp, Rcpp11, data.table, dtplyr
LinkingTo: Rcpp, Rcpp11
RoxygenNote: 5.0.1
Packaged: 2016-08-27 18:03:03 UTC; bob
Repository: CRAN
Date/Publication: 2016-08-27 20:17:14

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New package oceanmap with initial version 0.0.1
Package: oceanmap
Type: Package
Title: Plotting Toolbox for 2D Oceanographic Data
Version: 0.0.1
Date: 2016-08-16
Author: Robert K. Bauer
Maintainer: Robert K. Bauer <robert.bauer@ird.fr>
Depends: R (>= 2.10), maps, mapdata, raster, extrafont
Imports: abind, fields, marmap, plotrix, methods, utils, grDevices, maptools, sp, ncdf4, stats
Description: Plotting toolbox for 2D oceanographic data (satellite data, sst, chla, ocean fronts & bathymetry). Recognized classes and formats include ncdf4, Raster, '.nc' and '.gz' files.
License: GPL (>= 3)
Packaged: 2016-08-27 06:49:51 UTC; robert
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-08-27 15:48:48
SystemRequirements: ImageMagick

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New package optband with initial version 0.1
Package: optband
Type: Package
Title: 'surv' Object Confidence Bands Optimized by Area
Version: 0.1
Date: 2016-08-24
Author: Tom Chen & Sam Tracy
Maintainer: Sam Tracy <stracy@g.harvard.edu>
Description: Given a certain coverage level, obtains simultaneous confidence bands for the survival and cumulative hazard functions such that the area between is minimized. Produces an approximate solution based on local time arguments.
Depends: R (>= 3.1.0)
Imports: utils, LambertW
License: GPL-2 | GPL-3
LazyData: TRUE
URL: https://github.com/seasamgo/optband
BugReports: http://github.com/seasamgo/optband/issues
RoxygenNote: 5.0.1
Suggests: stats, survival, km.ci, knitr, rmarkdown
VignetteBuilder: knitr, rmarkdown
NeedsCompilation: no
Packaged: 2016-08-27 09:32:32 UTC; Rx
Repository: CRAN
Date/Publication: 2016-08-27 14:19:51

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New package edfun with initial version 0.2.0
Package: edfun
Type: Package
Title: Creating Empirical Distribution Functions
Version: 0.2.0
Date: 2016-08-27
Authors@R: c(person("Tal", "Galili", role = c("aut", "cre", "cph"), email = "tal.galili@gmail.com", comment = "https://www.r-statistics.com"))
Depends: R (>= 3.0.0)
Imports: stats
Suggests: knitr, rmarkdown
Description: Easily creating empirical distribution functions from data: 'dfun', 'pfun', 'qfun' and 'rfun'.
VignetteBuilder: knitr
License: GPL-2 | GPL-3
URL: https://cran.r-project.org/package=edfun, https://github.com/talgalili/edfun/, https://www.r-statistics.com/tag/edfun/
BugReports: https://github.com/talgalili/edfun/issues
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-27 10:36:51 UTC; junior
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com)
Maintainer: Tal Galili <tal.galili@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-27 14:24:35

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New package sFFLHD with initial version 0.1.0
Package: sFFLHD
Type: Package
Title: Sequential Full Factorial-Based Latin Hypercube Design
Version: 0.1.0
Author: Collin Erickson
Maintainer: Collin Erickson <collinberickson@gmail.com>
Description: Gives design points from a sequential full factorial-based Latin hypercube design, as described in Duan, Ankenman, Sanchez, and Sanchez (2015, Technometrics, <doi:10.1080/00401706.2015.1108233>).
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
Imports: DoE.base, methods, stats, conf.design
NeedsCompilation: no
Packaged: 2016-08-26 23:30:44 UTC; collin
Repository: CRAN
Date/Publication: 2016-08-27 07:52:49

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New package digitize with initial version 0.0.4
Package: digitize
Version: 0.0.4
Date: 2016-08-26
Title: Use Data from Published Plots in R
Authors@R: c( person("Timothée", "Poisot", email = "tim@poisotlab.io", role = c("aut")), person("Rene", "Sachse", email = "rene.sachse@googlemail.com", role = c("aut")), person("Jaime", "Ashander", email = "jashander@ucdavis.edu", role = c("aut", "cre")), person("Tal", "Galili", email = "tal.galili@gmail.com", role = c("aut")) )
Depends: R (>= 2.2.0)
Description: Import data from a digital image; it requires user input for calibration and to locate the data points. The end result is similar to 'DataThief' and other other programs that 'digitize' published plots or graphs.
License: GPL (>= 2)
Encoding: UTF-8
URL: https://github.com/tpoisot/digitize/
BugReports: https://github.com/tpoisot/digitize/issues
Imports: graphics, readbitmap (>= 0.1-4)
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: no
Packaged: 2016-08-27 00:45:39 UTC; jaime
Author: Timothée Poisot [aut], Rene Sachse [aut], Jaime Ashander [aut, cre], Tal Galili [aut]
Maintainer: Jaime Ashander <jashander@ucdavis.edu>
Repository: CRAN
Date/Publication: 2016-08-27 07:52:45

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Fri, 26 Aug 2016

New package voxel with initial version 1.2.1
Package: voxel
Title: Mass-Univariate Voxelwise Analysis of Medical Imaging Data
Version: 1.2.1
Authors@R: c(person("Angel", "Garcia de la Garza", email = "agarciadlg@gmail.com", role = c("aut", "cre")), person("Simon", "Vandekar", email= "simonv@mail.med.upenn.edu", role="aut"), person("David", "Roalf", email= "roalf@mail.med.upenn.edu", role="aut"), person("Kosha", "Ruparel", email= "kruparel@mail.med.upenn.edu", role="aut"), person("Ruben", "Gur", email= "gur@mail.med.upenn.edu", role="aut"), person("Raquel", "Gur", email= "raquel@mail.med.upenn.edu", role="aut"), person("Theodore", "Satterthwaite", email= "sattertt@mail.med.upenn.edu", role="aut"), person("R. Taki", "Shinohara", email= "rshi@mail.med.upenn.edu", role="aut") )
Description: Functions for the mass-univariate voxelwise analysis of medical imaging data that follows the NIfTI <http://nifti.nimh.nih.gov> format.
Depends: R (>= 3.2.3)
License: GPL-2
URL: https://github.com/angelgar/voxel
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
Imports: parallel,stats,mgcv,gamm4,oro.nifti,lmerTest,ggplot2
NeedsCompilation: no
Packaged: 2016-08-26 19:01:17 UTC; AGG
Author: Angel Garcia de la Garza [aut, cre], Simon Vandekar [aut], David Roalf [aut], Kosha Ruparel [aut], Ruben Gur [aut], Raquel Gur [aut], Theodore Satterthwaite [aut], R. Taki Shinohara [aut]
Maintainer: Angel Garcia de la Garza <agarciadlg@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-27 00:43:49

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New package stR with initial version 0.1
Package: stR
Type: Package
Title: STR Decomposition
Version: 0.1
Author: Alexander Dokumentov, Rob J Hyndman
Maintainer: Alexander Dokumentov <alexander.dokumentov@gmail.com>
URL: https://bitbucket.org/alexanderdokumentov/strpackage
License: GPL (>= 2)
Depends: R (>= 3.2.2)
Imports: compiler, Matrix, SparseM, quantreg, MatrixModels, forecast, foreach, stats, methods
Description: Methods for decomposing seasonal data: STR (a Seasonal-Trend decomposition procedure based on Regression) and Robust STR. In some ways, STR is similar to Ridge Regression and Robust STR can be related to LASSO. They allow for multiple seasonal components, multiple linear covariates with constant, flexible and seasonal influence. Seasonal patterns (for both seasonal components and seasonal covariates) can be fractional and flexible over time; moreover they can be either strictly periodic or have a more complex topology. The methods provide confidence intervals for the estimated components. The methods can be used for forecasting.
LazyData: true
RoxygenNote: 5.0.1
Suggests: testthat, demography, knitr, rmarkdown, doParallel, doMC
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-26 04:03:05 UTC; adokumen
Repository: CRAN
Date/Publication: 2016-08-27 00:46:43

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New package metacoder with initial version 0.1.2
Package: metacoder
Title: Tools for Parsing, Manipulating, and Graphing Hierarchical Data
Version: 0.1.2
Authors@R: c( person("Zachary", "Foster", email = "zacharyfoster1989@gmail.com", role = c("aut", "cre")), person("Niklaus", "Grunwald", email = "grunwaln@science.oregonstate.edu", role = c("ths")))
Maintainer: Zachary Foster <zacharyfoster1989@gmail.com>
Description: A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy).
Depends: R (>= 3.0.2)
License: GPL-2 | GPL-3
LazyData: true
Imports: stringr, ggplot2, igraph, scales, grid, taxize, seqinr, reshape2, zoo, traits, RColorBrewer, RCurl, ape, reshape, stats, grDevices, utils, lazyeval, dplyr, magrittr, readr
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
RoxygenNote: 5.0.1
Date: 2016-08-01
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2016-08-26 20:21:09 UTC; USDA-ARS\fosterz
Author: Zachary Foster [aut, cre], Niklaus Grunwald [ths]
Repository: CRAN
Date/Publication: 2016-08-27 00:35:09

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New package MBSGS with initial version 1.0.0
Package: MBSGS
Type: Package
Title: Multivariate Bayesian Sparse Group Selection with Spike and Slab
Version: 1.0.0
Author: Benoit Liquet, Matthew Sutton
Maintainer: Benoit Liquet <benoit.liquet@qut.edu.au>
Imports: MCMCpack, MASS, mgcv, mnormt, truncnorm
Description: An implementation of a Bayesian sparse group model using spike and slab priors in a regression context. It is designed for regression with a multivariate response variable, but also provides an implementation for univariate response.
License: GPL (>= 2.0)
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2016-08-25 23:05:37 UTC; liquetwe
Repository: CRAN
Date/Publication: 2016-08-27 00:33:23

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New package IsoSpecR with initial version 1.0
Encoding: UTF-8
Package: IsoSpecR
Type: Package
Title: An R Interface to the IsoSpec Algorithm
Version: 1.0
Date: 2016-08-15
Author: Mateusz Krzysztof Łącki and Michał Startek
Maintainer: Matteo Lacki <matteo.lacki@gmail.com>
Description: IsoSpec is a fine structure calculator used for obtaining the most probable masses of a chemical compound given the frequencies of the composing isotopes and their masses. It finds the smallest set of isotopologues with a given probability. The probability is assumed to be that of the product of multinomial distributions, each corresponding to one particular element and parametrized by the frequencies of finding these elements in nature. These numbers are supplied by IUPAC - the International Union of Pure and Applied Chemistry.
License: BSD_2_clause + file LICENCE
Depends: R (>= 3.0.0)
Imports: Rcpp (>= 0.12.0)
LazyData: no
LinkingTo: Rcpp
NeedsCompilation: yes
SystemRequirements: C++11
RoxygenNote: 5.0.1
Packaged: 2016-08-26 12:49:05 UTC; mist
Repository: CRAN
Date/Publication: 2016-08-26 20:35:20

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New package DHARMa with initial version 0.1.0
Package: DHARMa
Title: Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models
Version: 0.1.0
Date: 2016-08-25
Authors@R: c(person("Florian", "Hartig", email = "florian.hartig@biologie.uni-regensburg.de", role = c("aut", "cre")))
Description: The 'DHARMa' package uses a simulation-based approach to create readily interpretable scaled (quantile) residuals from fitted generalized linear mixed models. Currently supported are 'lme4', 'glm' (except quasi-distributions) and 'lm' model classes. The resulting residuals are standardized to values between 0 and 1 and can be interpreted as intuitively as residuals from a linear regression. The package also provides a number of plot and test functions for typical model misspecification problem, such as over/underdispersion, zero-inflation, and spatial and temporal autocorrelation.
Depends: R (>= 3.0.0)
Imports: stats, graphics, utils, grDevices, gap, qrnn, lmtest, ape, sfsmisc, MASS, doParallel, foreach, lme4
Suggests: aods3, knitr, testthat
License: GPL (>= 3)
URL: https://github.com/florianhartig/DHARMa
BugReports: https://github.com/florianhartig/DHARMa/issues
LazyData: true
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-26 09:38:05 UTC; Florian
Author: Florian Hartig [aut, cre]
Maintainer: Florian Hartig <florian.hartig@biologie.uni-regensburg.de>
Repository: CRAN
Date/Publication: 2016-08-26 19:05:58

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New package rplexos with initial version 1.1.8
Package: rplexos
Type: Package
Title: Read and Analyze 'PLEXOS' Solutions
Version: 1.1.8
Date: 2016-08-22
Authors@R: c( person("Clayton","Barrows", , "clayton.barrows@nrel.gov", c("cre","ctb")), person("Eduardo", "Ibanez", , "edu.ibanez@gmail.com", c("aut")), person("Jef", "Daniels", , " ", role=c("aut")), person("Marcin", "Kalicinski", , "kalita@poczta.onet.pl", "ctb", "for the included RapidXml source"), person("National Renewable Energy Laboratory", role = "cph") )
Description: Efficiently read and analyze 'PLEXOS' solutions by converting them into 'SQLite' databases that can be easily queried. It supports collation of solutions that may have been divided into different time partitions, as well as the comparison across different scenarios. 'PLEXOS' is a power systems production cost model, created and distributed by Energy Exemplar (see <http://energyexemplar.com/software/plexos-desktop-edition> for more information).
License: MIT + file LICENSE
URL: https://github.com/NREL/rplexos, http://energyexemplar.com/software/plexos-desktop-edition/
BugReports: https://github.com/NREL/rplexos/issues
Depends: R (>= 3.1.0)
Imports: Rcpp (>= 0.11.5), dplyr (>= 0.3), RSQLite (>= 1.0), DBI, data.table, tidyr, lubridate, stringi, parallel, doParallel, foreach
Suggests: knitr, testthat, ggplot2
LinkingTo: Rcpp (>= 0.11.5)
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-25 15:47:37 UTC; cbarrows
Author: Clayton Barrows [cre, ctb], Eduardo Ibanez [aut], Jef Daniels [aut], Marcin Kalicinski [ctb] (for the included RapidXml source), National Renewable Energy Laboratory [cph]
Maintainer: Clayton Barrows <clayton.barrows@nrel.gov>
Repository: CRAN
Date/Publication: 2016-08-26 07:45:22

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Thu, 25 Aug 2016

New package MSGARCH with initial version 0.16
Package: MSGARCH
Type: Package
Title: Markov-Switching GARCH Models
Version: 0.16
Date: 2016-08-25
Authors@R: c(person("Keven", "Bluteau", role = c("aut", "cre"), email = "Keven.Bluteau@unine.ch"), person("David", "Ardia", role = c("aut"), email = "David.Ardia@unine.ch"), person("Denis-Alexandre", "Trottier", role = c("ctb"), email = "denis-alexandre.trottier.1@ulaval.ca"), person("Kris", "Boudt", role = c("ctb"), email = "kris.boudt@vub.ac.be"), person("Brian", "Peterson", role = c("ctb"), email = "brian@braverock.com"))
Author: Keven Bluteau [aut, cre], David Ardia [aut], Denis-Alexandre Trottier [ctb], Kris Boudt [ctb], Brian Peterson [ctb]
Maintainer: Keven Bluteau <Keven.Bluteau@unine.ch>
Description: The MSGARCH package offers methods to fit (by Maximum Likelihood or Bayesian), simulate, and forecast various Markov-Switching GARCH processes.
License: GPL (>= 2)
Imports: Rcpp, adaptMCMC, DEoptim, nloptr, methods, stringr, ggplot2, reshape2, zoo, expm, fanplot
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-25 11:36:57 UTC; bluteauk
Repository: CRAN
Date/Publication: 2016-08-26 02:46:24

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New package sunburstR with initial version 0.6.0
Package: sunburstR
Type: Package
Title: 'Htmlwidget' for 'Kerry Rodden' 'd3.js' Sequence Sunburst
Version: 0.6.0
Date: 2016-08-25
Authors@R: c( person( "Mike", "Bostock" , role = c("aut", "cph") , comment = "d3.js library in htmlwidgets/lib, http://d3js.org" ), person( "Kerry", "Rodden" , role = c("aut", "cph") , comment = "sequences library in htmlwidgets/lib, https://gist.github.com/kerryrodden/7090426" ), person( "Kent", "Russell" , role = c("aut", "cre") , comment = "R interface" , email = "kent.russell@timelyportfolio.com" ), person( "Florian", "Breitwieser" , role = c("ctb") , comment = "R interface" ) )
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Description: Make interactive 'd3.js' sequence sunburst diagrams in R with the convenience and infrastructure of an 'htmlwidget'.
License: MIT + file LICENSE
LazyData: TRUE
Imports: htmlwidgets, htmltools, jsonlite, markdown
Suggests: knitr, pipeR
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-25 20:23:47 UTC; Kent
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib, http://d3js.org), Kerry Rodden [aut, cph] (sequences library in htmlwidgets/lib, https://gist.github.com/kerryrodden/7090426), Kent Russell [aut, cre] (R interface), Florian Breitwieser [ctb] (R interface)
Repository: CRAN
Date/Publication: 2016-08-25 23:03:42

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New package PBIBD with initial version 1.0
Package: PBIBD
Type: Package
Title: Efficiencies of PBIB Designs
Version: 1.0
Date: 2016-08-25
Author: Parneet Kaur <parneet.nonu93@gmail.com>, Kush Sharma <kush.vashishtha@gmail.com>, Davinder Kumar Garg <dkgarg_stat@yahoo.co.in>
Maintainer: Kush Sharma <kush.vashishtha@gmail.com>
Description: Assists in calculating the efficiencies of any type of Partially Balanced Incomplete Block Designs with two, three, four and five associate classes. This will help the researchers in calculating the efficiencies of their PBIB designs very quickly and efficiently.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-08-25 11:14:45 UTC; hcl
Repository: CRAN
Date/Publication: 2016-08-25 14:04:50

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New package velox with initial version 0.1.0
Package: velox
Type: Package
Title: Fast Raster Manipulation and Extraction
Version: 0.1.0
Date: 2016-08-24
Author: Philipp Hunziker
Maintainer: Philipp Hunziker <hunzikp@gmail.com>
Description: C++ accelerated raster manipulation and extraction.
License: GPL (>= 2)
Imports: methods, Rcpp (>= 0.11.6), raster, rgeos, rgdal, sp
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2016-08-24 20:22:13 UTC; hunzikp
LazyData: TRUE
RoxygenNote: 5.0.1
Repository: CRAN
Date/Publication: 2016-08-25 10:01:02

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New package sfc with initial version 0.1.0
Package: sfc
Type: Package
Title: Substance Flow Computation
Version: 0.1.0
Authors@R: person("Hu", "Sheng", email = "shenghu@nju.edu.cn", role = c("aut", "cre"))
Description: Provides a function sfc() to compute the substance flow with the input files --- "data" and "model". If sample.size is set more than 1, uncertainty analysis will be executed while the distributions and parameters are supplied in the file "data".
Depends: R (>= 3.1.0), dplyr, tidyr
Imports: stats, utils, triangle, zoo, sna
License: GPL
URL: https://github.com/ctfysh/sfc
BugReports: https://github.com/ctfysh/sfc/issues
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-25 00:30:56 UTC; tiger
Author: Hu Sheng [aut, cre]
Maintainer: Hu Sheng <shenghu@nju.edu.cn>
Repository: CRAN
Date/Publication: 2016-08-25 10:01:01

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New package qfasar with initial version 1.0.0
Package: qfasar
Type: Package
Title: Quantitative Fatty Acid Signature Analysis in R
Version: 1.0.0
Authors@R: person("Jeffrey F.", "Bromaghin", email = "jbromaghin@usgs.gov", role = c("aut", "cre"))
Description: An implementation of Quantitative Fatty Acid Signature Analysis (QFASA) in R. QFASA is a method of estimating the diet composition of predators. The fundamental unit of information in QFASA is a fatty acid signature (signature), which is a vector of proportions describing the composition of fatty acids within lipids. Signature data from at least one predator and from samples of all potential prey types are required. Calibration coefficients, which adjust for the differential metabolism of individual fatty acids by predators, are also required. Given those data inputs, a predator signature is modeled as a mixture of prey signatures and its diet estimate is obtained as the mixture that minimizes a measure of distance between the observed and modeled signatures. A variety of estimation options and simulation capabilities are implemented. Please refer to the vignette for additional details and references.
License: CC0
LazyData: TRUE
Imports: Rsolnp (>= 1.16)
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Packaged: 2016-08-24 21:42:58 UTC; jbromaghin
Date: 2016-07-26
NeedsCompilation: no
Author: Jeffrey F. Bromaghin [aut, cre]
Maintainer: Jeffrey F. Bromaghin <jbromaghin@usgs.gov>
Repository: CRAN
Date/Publication: 2016-08-25 10:00:58

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New package memo with initial version 1.0
Package: memo
Type: Package
Title: In-Memory Caching for Repeated Computations
Version: 1.0
Date: 2016-8-22
Author: Peter Meilstrup <peter.meilstrup@gmail.com>
Maintainer: Peter Meilstrup <peter.meilstrup@gmail.com>
Description: A simple in-memory, LRU cache that can be wrapped around any function to memoize it. The cache can be keyed on a hash of the input data (using 'digest') or on pointer equivalence.
License: MIT + file LICENSE
Imports: digest
Suggests: testthat (>= 0.2), knitr, rmarkdown
Collate: 'lru.R' 'cache.R' 'getPointer.R' 'memo-description.r'
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-24 22:42:15 UTC; peter
Repository: CRAN
Date/Publication: 2016-08-25 10:00:55

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New package JSM with initial version 0.1.0
Package: JSM
Type: Package
Title: Semiparametric Joint Modeling of Survival and Longitudinal Data
Version: 0.1.0
Date: 2016-08-16
Author: Cong Xu, Pantelis Z. Hadjipantelis and Jane-Ling Wang
Maintainer: Cong Xu <congxu@stanford.edu>
Description: Maximum likelihood estimation for the semiparametric joint modeling of survival and longitudinal data. Log-transforms and PRES procedures.
License: BSD_3_clause + file LICENSE
Imports: Rcpp (>= 0.11.5)
LinkingTo: Rcpp, RcppEigen
NeedsCompilation: yes
Depends: R (>= 3.0.0), nlme, splines, statmod, survival
Suggests: testthat
LazyData: true
Packaged: 2016-08-24 17:19:36 UTC; helenxu
Repository: CRAN
Date/Publication: 2016-08-25 09:59:10

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New package GRAPE with initial version 0.1.0
Package: GRAPE
Type: Package
Title: Gene-Ranking Analysis of Pathway Expression
Version: 0.1.0
Author: Michael Klein <michael.klein@yale.edu>
Maintainer: Michael Klein <michael.klein@yale.edu>
Imports: stats
Description: Gene-Ranking Analysis of Pathway Expression (GRAPE) is a tool for summarizing the consensus behavior of biological pathways in the form of a template, and for quantifying the extent to which individual samples deviate from the template. GRAPE templates are based only on the relative rankings of the genes within the pathway and can be used for classification of tissue types or disease subtypes. GRAPE can be used to represent gene-expression samples as vectors of pathway scores, where each pathway score indicates the departure from a given collection of reference samples. The resulting pathway- space representation can be used as the feature set for various applications, including survival analysis and drug-response prediction. ---------------------------------------------------------------------------------------------- GRAPE is a generalization and extension of DIRAC, originally implemented in: Eddy, J.A., et al. (2010) <DOI:10.1371/journal.pcbi.1000792>. As a result, some of the software below may have been previously published in Matlab by the DIRAC authors and can be found at: https://price.systemsbiology.org/pricelab-resources/software/.
License: GPL-2
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-24 22:45:48 UTC; michaelklein
Repository: CRAN
Date/Publication: 2016-08-25 09:59:05

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Wed, 24 Aug 2016

New package seleniumPipes with initial version 0.3.0
Package: seleniumPipes
Type: Package
Title: R Client Implementing the W3C WebDriver Specification
Version: 0.3.0
Description: The W3C WebDriver specification defines a way for out-of-process programs to remotely instruct the behaviour of web browsers. It is detailed at <https://w3c.github.io/webdriver/webdriver-spec.html>. This package provides an R client implementing the W3C specification.
Authors@R: c( person("John", "Harrison", , "johndharrison0@gmail.com", role = c("aut", "cre")))
Depends: R (>= 3.0.0),httr,jsonlite,xml2,magrittr,whisker
Encoding: UTF-8
License: GPL-3
Suggests: RSelenium, knitr, rmarkdown, testthat, data.table
RoxygenNote: 5.0.1
URL: https://github.com/johndharrison/seleniumPipes
BugReports: https://github.com/johndharrison/seleniumPipes/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-24 16:42:57 UTC; john
Author: John Harrison [aut, cre]
Maintainer: John Harrison <johndharrison0@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-24 21:45:54

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New package makeFlow with initial version 1.0.2
Package: makeFlow
Type: Package
Title: Visualizing Sequential Classifications
Version: 1.0.2
Date: 2016-08-22
Author: Alex J. Krebs
Maintainer: Alex J. Krebs <Krebs.AlexJ@gmail.com>
Description: A user-friendly tool for visualizing categorical or group movement.
License: GPL (>= 2)
Imports: dplyr, RColorBrewer
Copyright: Copyright Notice GENERAL DISCLAIMER This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. In short: You may use it any way you like, as long as you do not charge money for it, remove this notice, or hold anyone liable for its results. Also, please acknowledge the source and communicate changes to the author. If this software is used in work presented for publication, kindly reference it using for example: Krebs AJ (2016): makeFlow: Visualizing Sequential Classifications. Be sure to reference R itself and other libraries used.
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-24 06:27:15 UTC; DELL PC
Repository: CRAN
Date/Publication: 2016-08-24 18:02:38

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New package JWileymisc with initial version 0.2.0
Package: JWileymisc
Type: Package
Title: Miscellaneous Utilities and Functions
Version: 0.2.0
Date: 2016-08-24
Author: Joshua F. Wiley <jwiley.psych@gmail.com>
Maintainer: Joshua F. Wiley <jwiley.psych@gmail.com>
Description: A collection of miscellaneous tools and functions, such as tools to generate descriptive statistics tables, format output, visualize relations among variables or check distributions.
License: GPL (>= 3)
Depends: R (>= 3.2.0), data.table (>= 1.9.6), ggplot2 (>= 0.9.0), cowplot, foreach, lavaan (>= 0.5-15)
Imports: stats, utils, Hmisc, multcompView, devtools, graphics, mgcv, plyr, mice
Suggests: scales, testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-24 12:04:15 UTC; jwile
Repository: CRAN
Date/Publication: 2016-08-24 18:38:27

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New package evidenceFactors with initial version 1.00
Package: evidenceFactors
Type: Package
Title: Reporting Tools for Sensitivity Analysis of Evidence Factors in Observational Studies
Version: 1.00
Date: 2016-08-16
Author: Bikram Karmakar
Maintainer: Bikram Karmakar <bikramk@wharton.upenn.edu>
Description: Integrated Sensitivity Analysis of Evidence Factors in Observational Studies.
License: GPL-2
Imports: sensitivitymv
NeedsCompilation: no
Packaged: 2016-08-23 21:01:09 UTC; bikramk
Repository: CRAN
Date/Publication: 2016-08-24 18:02:36

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New package not with initial version 1.0
Package: not
Type: Package
Title: Narrowest-Over-Threshold Change-Point Detection
Version: 1.0
Date: 2016-08-01
Author: Rafal Baranowski, Yining Chen, Piotr Fryzlewicz
Maintainer: Rafal Baranowski <r.baranowski@lse.ac.uk>
Depends: graphics, stats, splines
Description: Provides efficient implementation of the Narrowest-Over-Threshold methodology for detecting an unknown number of change-points occurring at unknown locations in one-dimensional data following 'deterministic signal + noise' model. Currently implemented scenarios are: piecewise-constant signal, piecewise-constant signal with a heavy-tailed noise, piecewise-linear signal, piecewise-quadratic signal, piecewise-constant signal and with piecewise-constant variance of the noise.
License: GPL-2
NeedsCompilation: yes
RoxygenNote: 5.0.1
Packaged: 2016-08-23 18:14:43 UTC; rafal
Repository: CRAN
Date/Publication: 2016-08-23 23:15:50

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Tue, 23 Aug 2016

New package onlineCPD with initial version 1.0
Package: onlineCPD
Type: Package
Title: Detect Changepoints in Multivariate Time Series
Version: 1.0
Date: 2016-07-28
Author: Zachary Zanussi <zachary9506@gmail.com>
Maintainer: Zachary Zanussi <zachary9506@gmail.com>
Description: Detects multiple changepoints in uni- or multivariate time series data. The algorithm is based on Bayesian methods and detects changes on-line; i.e. the model updates with every observation rather than relying on retrospective segmentation. However, the user may choose to use the algorithm off- or on-line.
License: GPL-3
Imports: ggplot2
Depends: scales, gridExtra, reshape2
NeedsCompilation: no
Packaged: 2016-08-23 16:23:14 UTC; zanussiz
Repository: CRAN
Date/Publication: 2016-08-23 20:00:17

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New package red with initial version 0.1.0
Package: red
Title: IUCN Redlisting Tools
Version: 0.1.0
Date: 2016-08-19
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Description: Includes algorithms to facilitate the assessment of extinction risk of species according to the IUCN (International Union for Conservation of Nature, see <http://www.iucn.org> for more information) red list criteria.
Depends: R (>= 3.0.0)
Imports: BAT, dismo, geosphere, graphics, grDevices, igraph, maptools, raster, rgdal, rgeos, rJava, sp, stats, utils
License: GPL-3
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-22 11:09:27 UTC; localadmin_pcardoso
Repository: CRAN
Date/Publication: 2016-08-23 15:55:29

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New package ecr with initial version 1.0
Package: ecr
Type: Package
Title: Evolutionary Computing in R
Description: Provides a powerful framework for evolutionary computing in R. The user can easily construct powerful evolutionary algorithms for tackling both single- and multi-objective problems by plugging in different predefined evolutionary building blocks, e. g., operators for mutation, recombination and selection with just a few lines of code. Your problem cannot be easily solved with a standard EA which works on real-valued vectors, permutations or binary strings? No problem, 'ecr' has been developed with that in mind. Extending the framework with own operators is also possible. Additionally there are various comfort functions, like monitoring, logging and more.
Version: 1.0
Encoding: UTF-8
Date: 2016-08-22
Authors@R: c(person("Jakob", "Bossek", email = "j.bossek@gmail.com", role = c("aut", "cre")), person("Dirk", "Surmann", email = "surmann@statistik.tu-dortmund.de", role = "ctb"))
Maintainer: Jakob Bossek <j.bossek@gmail.com>
License: BSD_2_clause + file LICENSE
URL: https://github.com/jakobbossek/ecr
BugReports: https://github.com/jakobbossek/ecr/issues
Depends: ParamHelpers (>= 1.8), BBmisc (>= 1.6), smoof (>= 1.4), ggplot2 (>= 1.0.0)
Imports: checkmate (>= 1.1), parallelMap (>= 1.1), reshape2 (>= 1.4.1), gridExtra (>= 0.9.1)
Suggests: testthat (>= 0.9.1)
ByteCompile: yes
LazyData: yes
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-23 10:21:07 UTC; jboss
Author: Jakob Bossek [aut, cre], Dirk Surmann [ctb]
Repository: CRAN
Date/Publication: 2016-08-23 15:25:09

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New package Difdtl with initial version 2.0
Package: Difdtl
Type: Package
Title: Difference of Two Precision Matrices Estimation
Version: 2.0
Date: 2016-08-22
Author: Huili Yuan
Maintainer: Huili Yuan <hlyuan0116@sina.com>
Depends: MASS
Description: Difference of two precision matrices is estimated by the d-trace loss with lasso penalty, given two sample classes.
License: GPL (>= 2)
Packaged: 2016-08-23 13:13:54 UTC; hlyuan
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-08-23 16:31:09

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New package CTM with initial version 0.1
Package: CTM
Type: Package
Title: A Text Mining Toolkit for Chinese Document
Version: 0.1
Date: 2016-08-23
Author: Jim Liu
Maintainer: Jim Liu <jimliu741523@gmail.com>
Description: The CTM package is designed to solve problems of text mining and is specific for Chinese document.
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
Imports: jiebaR
NeedsCompilation: no
Packaged: 2016-08-23 10:54:51 UTC; jimliu
Repository: CRAN
Date/Publication: 2016-08-23 15:25:02

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New package respirometry with initial version 0.1.0
Package: respirometry
Type: Package
Title: Tools for Conducting Respirometry Experiments
Version: 0.1.0
Date: 2016-08-22
Author: Matthew A. Birk
Maintainer: Matthew A. Birk <matthewabirk@gmail.com>
Description: Provides tools to enable the researcher to more precisely conduct respirometry experiments. Strong emphasis is on aquatic respirometry. Tools focus on helping the researcher setup and conduct experiments. Analysis of the resulting data is not a focus since analyses are often specific to a particular setup, and thus are better created by the researcher individually. This package provides tools for intermittent, flow-through, and closed respirometry techniques.
Imports: graphics, lubridate, marelac, measurements, methods, seacarb, stats
License: GPL-3
LazyData: TRUE
Encoding: UTF-8
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-22 18:00:35 UTC; matthewbirk
Repository: CRAN
Date/Publication: 2016-08-23 02:17:14

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Mon, 22 Aug 2016

New package liqueueR with initial version 0.0.1
Package: liqueueR
Type: Package
Title: Implements Queue, PriorityQueue and Stack Classes
Version: 0.0.1
Authors@R: person("Andrew", "Collier", email = "andrew@exegetic.biz", role = c("aut", "cre"))
Description: Provides three classes: Queue, PriorityQueue and Stack. Queue is just a "plain vanilla" FIFO queue; PriorityQueue orders items according to priority. Stack implements LIFO.
URL: https://github.com/DataWookie/liqueueR
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: itertools, methods
Suggests: testthat, iterators
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-22 12:23:56 UTC; colliera
Author: Andrew Collier [aut, cre]
Maintainer: Andrew Collier <andrew@exegetic.biz>
Repository: CRAN
Date/Publication: 2016-08-22 19:53:24

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New package cooccurNet with initial version 0.1.0
Package: cooccurNet
Type: Package
Title: Co-Occurrence Network
Version: 0.1.0
Depends: R (>= 3.2.0)
Imports: seqinr, igraph, bigmemory, Matrix, data.table, foreach
Author: Yuanqiang Zou <jerrytsou2001@gmail.com>, Yousong Peng <pys2013@hnu.edu.cn> and Taijiao Jiang <taijiao@moon.ibp.ac.cn>
Maintainer: Yuanqiang Zou <jerrytsou2001@gmail.com>
Description: Read and preprocess fasta format data, and construct the co-occurrence network for downstream analyses. This R package is to construct the co-occurrence network with the algorithm developed by Du (Du 2008). It could be used to transform the data with high-dimension, such as DNA or protein sequence, into co-occurrence networks. Co-occurrence network could not only capture the co-variation pattern between variables, such as the positions in DNA or protein sequences, but also reflect the relationship between samples. Although it is originally used in DNA and protein sequences, it could be also used to other kinds of data, such as SNP.
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-22 15:13:36 UTC; Jerry
Repository: CRAN
Date/Publication: 2016-08-22 20:43:40

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New package supervisedPRIM with initial version 1.0.1
Package: supervisedPRIM
Title: Supervised Classification Learning and Prediction using Patient Rules Induction Method (PRIM)
Version: 1.0.1
Date: 2016-08-22
Authors@R: person("David", "Shaub", email = "davidshaub@gmx.com", role = c("aut", "cre"))
Description: The Patient Rules Induction Method (PRIM) is typically used for "bump hunting" data mining to identify regions with abnormally high concentrations of data with large or small values. This package extends this methodology so that it can be applied to binary classification problems and used for prediction.
Depends: R (>= 3.1.1), stats, prim (>= 1.0.16)
Suggests: kernlab, testthat
License: GPL-3
URL: https://github.com/dashaub/supervisedPRIM
BugReports: https://github.com/dashaub/supervisedPRIM/issues
LazyData: true
RoxygenNote: 5.0.1
ByteCompile: true
NeedsCompilation: no
Packaged: 2016-08-22 02:29:24 UTC; david
Author: David Shaub [aut, cre]
Maintainer: David Shaub <davidshaub@gmx.com>
Repository: CRAN
Date/Publication: 2016-08-22 10:00:23

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New package SSRA with initial version 0.1-0
Package: SSRA
Type: Package
Title: Sakai Sequential Relation Analysis
Version: 0.1-0
Date: 2016-08-22
Authors@R: c(person(given="Takuya", family="Yanagida", email="takuya.yanagida@univie.ac.at", role=c("cre","aut")), person(given="Keiko", family="Sakai",email="keiko.sakai@@oit.ac.jp", role="aut"))
Author: Takuya Yanagida [cre, aut], Keiko Sakai [aut]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Description: Takeya Semantic Structure Analysis (TSSA) and Sakai Sequential Relation Analysis (SSRA) for polytomous items for examining whether each pair of items has a sequential or equal relation. Package includes functions for generating a sequential relation table and a treegram to visualize sequential or equal relations between pairs of items.
License: GPL-3
LazyLoad: yes
LazyData: true
Imports: shape, stringr
Depends: R (>= 3.2.0)
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-22 01:25:19 UTC; Takuya
Repository: CRAN
Date/Publication: 2016-08-22 10:00:17

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New package kzfs with initial version 1.0.0.12
Package: kzfs
Title: Multi-Scale Motions Separation with Kolmogorov-Zurbenko Periodogram Signals
Version: 1.0.0.12
Authors@R: c(person("Ming", "Luo", email = "ml226662@gmail.com", role = c("aut", "cre")), person("Igor", "Zurbenko", email = "IZurbenko@albany.edu", role = "aut"))
Description: Separation of wave motions in different scales and directions based on Kolmogorov-Zurbenko 2D periodograms and directional periodograms.
Depends: R (>= 3.2.2)
License: GPL (>= 2)
LazyData: true
Imports: kzft, methods, digest
RoxygenNote: 5.0.1
Suggests: polynom
NeedsCompilation: yes
Packaged: 2016-08-22 04:40:36 UTC; Ming Luo
Author: Ming Luo [aut, cre], Igor Zurbenko [aut]
Maintainer: Ming Luo <ml226662@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-22 10:00:21

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Sun, 21 Aug 2016

New package indelmiss with initial version 1.0.7
Package: indelmiss
Type: Package
Title: Insertion Deletion Analysis While Accounting for Possible Missing Data
Version: 1.0.7
Date: 2016-08-21
Author: Utkarsh J. Dang and G. Brian Golding
Maintainer: Utkarsh J. Dang <udang@binghamton.edu>
Description: Genome-wide gene insertion and deletion rates can be modelled in a maximum likelihood framework with the additional flexibility of modelling potential missing data using the models included within. These models simultaneously estimate insertion and deletion (indel) rates of gene families and proportions of "missing" data for (multiple) taxa of interest. The likelihood framework is utilized for parameter estimation. A phylogenetic tree of the taxa and gene presence/absence patterns (with data ordered by the tips of the tree) are required. For more details, see Utkarsh J. Dang, Alison M. Devault, Tatum D. Mortimer, Caitlin S. Pepperell, Hendrik N. Poinar, G. Brian Golding (2016). Gene insertion deletion analysis while accounting for possible missing data. Genetics (accepted).
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.2), ape (>= 3.2), numDeriv (>= 2012.9.1), phangorn (>= 1.99.13)
LinkingTo: Rcpp
Suggests: testthat
Depends: R (>= 2.10)
LazyData: true
NeedsCompilation: yes
Packaged: 2016-08-21 19:54:08 UTC; owner
Repository: CRAN
Date/Publication: 2016-08-22 01:59:09

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New package zebu with initial version 0.1.0
Package: zebu
Type: Package
Title: Local Association Measures
Version: 0.1.0
Date: 2016-08-21
Authors@R: c( person("Olivier M. F.", "Martin", email = "olivmrtn@gmail.com", role = c("aut", "cre")), person("Michel", "Ducher", email = "michel.ducher@chu-lyon.fr", role = "aut"))
Author: Olivier M. F. Martin [aut, cre], Michel Ducher [aut]
Maintainer: Olivier M. F. Martin <olivmrtn@gmail.com>
Description: Implements the estimation of local (and global) association measures: Ducher's Z, pointwise mutual information and normalized pointwise mutual information. The significance of local (and global) association is accessed using p-values estimated by permutations. Finally, using local association subgroup analysis, it identifies if the association between variables is dependent on the value of another variable.
URL: http://github.com/olivmrtn/zebu
BugReports: https://github.com/olivmrtn/zebu/issues
Depends: R (>= 3.2.0)
License: GPL-3
LazyData: true
Imports: ggplot2 (>= 2.0.0), reshape2 (>= 1.4.0), pbapply (>= 1.1.0), plyr (>= 1.8.0), parallel (>= 3.2.0)
Suggests: knitr, rmarkdown, devtools
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-21 19:33:43 UTC; oliviermartin
Repository: CRAN
Date/Publication: 2016-08-21 22:05:55

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New package ph2mult with initial version 0.1.0
Package: ph2mult
Type: Package
Title: Phase II Clinical Trial Design for Multinomial Endpoints
Version: 0.1.0
Author: Yalin Zhu, Rui Qin
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>
Description: Provide multinomial design methods under intersection-union test (IUT) and union-intersection test (UIT) scheme for Phase II trial. The design types include : Minimax (minimize the maximum sample size), Optimal (minimize the expected sample size), Admissible (minimize the Bayesian risk) and Maxpower (maximize the exact power level).
License: GPL (>= 2)
LazyData: TRUE
Imports: clinfun, graphics, stats
Suggests: gsDesign, survival
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-21 19:39:13 UTC; yalin.zhu
Repository: CRAN
Date/Publication: 2016-08-21 22:07:30

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New package PDM with initial version 0.1
Package: PDM
Type: Package
Title: Photogrammetric Distances Measurer
Version: 0.1
Date: 2016-08-20
Author: J.F. Palomeque-Gonzalez and M. San-Juan
Maintainer: J.F. Palomeque-Gonzalez <jfpalomeque.gonzalez@gmail.com>
Depends: R (>= 3.1.0), jpeg
Description: Measures real distances in pictures. With PDM() function, you can choose one '*.jpg' file, select the measure in mm of scale, starting and and finishing point in the graphical scale, the name of the measure, and starting and and finishing point of the measures. After, ask the user for a new measure.
License: GPL
LazyData: TRUE
NeedsCompilation: no
Packaged: 2016-08-21 16:14:01 UTC; juan
Repository: CRAN
Date/Publication: 2016-08-21 18:33:03

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New package OSMscale with initial version 0.2.9
Package: OSMscale
Title: Add a Scale Bar to 'OpenStreetMap' Plots
Version: 0.2.9
Date: 2016-08-21
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Description: Functionality to handle and project lat-long coordinates, easily download background maps and add a correct scale bar to 'OpenStreetMap' plots in any map projection.
Imports: OpenStreetMap, berryFunctions (>= 1.11.0), sp
URL: https://github.com/brry/OSMscale
License: GPL-3
Encoding: UTF-8
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-21 15:31:07 UTC; berry
Repository: CRAN
Date/Publication: 2016-08-21 18:33:01

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New package bikeshare14 with initial version 0.1.0
Package: bikeshare14
Title: Bay Area Bike Share Trips in 2014
Version: 0.1.0
Authors@R: c( person("Arunkumar", "Srinivasan", email="arunkumar.sriniv@gmail.com", role=c("aut", "cre")) )
Maintainer: Arunkumar Srinivasan <arunkumar.sriniv@gmail.com>
Description: Anonymised Bay Area bike share trip data for the year 2014. Also contains additional metadata on stations and weather.
License: CC0
LazyData: true
Depends: R (>= 2.10)
Suggests: data.table
URL: http://github.com/arunsrinivasan/bikeshare14
BugReports: http://github.com/arunsrinivasan/bikeshare14
NeedsCompilation: no
Packaged: 2016-08-20 23:44:51 UTC; asrinivasan
Author: Arunkumar Srinivasan [aut, cre]
Repository: CRAN
Date/Publication: 2016-08-21 10:55:54

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Sat, 20 Aug 2016

New package rpostgis with initial version 1.0.0
Package: rpostgis
Version: 1.0.0
Date: 2016-08-20
Title: R Interface to a 'PostGIS' Database
Description: Provides additional functions to the 'RPostgreSQL' package to interface R with a 'PostGIS'-enabled database, as well as convenient wrappers to common 'PostgreSQL' queries.
Authors@R: c( person("Mathieu", "Basille", email = "basille@ufl.edu", role = c("aut")), person("David", "Bucklin", email = "dbucklin@ufl.edu", role = c("aut", "cre")) )
Depends: R (>= 3.3.0), RPostgreSQL, DBI
Imports: methods, raster, rgeos, sp, stats
Suggests: rgdal, wkb
License: GPL (>= 3)
LazyData: true
URL: https://github.com/mablab/rpostgis
BugReports: https://github.com/mablab/rpostgis/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-20 14:11:06 UTC; david
Author: Mathieu Basille [aut], David Bucklin [aut, cre]
Maintainer: David Bucklin <dbucklin@ufl.edu>
Repository: CRAN
Date/Publication: 2016-08-20 16:37:17

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New package predictionInterval with initial version 1.0.0
Package: predictionInterval
Type: Package
Title: Prediction Interval Functions for Assessing Replication Study Results
Version: 1.0.0
Date: 2016-08-19
Author: David Stanley
Maintainer: David Stanley <dstanley@uoguelph.ca>
Description: A common problem faced by journal reviewers and authors is the question of whether the results of a replication study are consistent with the original published study. One solution to this problem is to examine the effect size from the original study and generate the range of effect sizes that could reasonably be obtained (due to random sampling) in a replication attempt (i.e., calculate a prediction interval). This package has functions that calculate the prediction interval for the correlation (i.e., r), standardized mean difference (i.e., d-value), and mean.
Imports: ggplot2, MBESS, MASS, stats, pbapply
License: MIT License + file LICENSE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-20 12:29:54 UTC; stanley
Repository: CRAN
Date/Publication: 2016-08-20 15:39:24

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New package ctqr with initial version 1.0
Package: ctqr
Type: Package
Title: Censored and Truncated Quantile Regression
Version: 1.0
Date: 2016-08-19
Author: Paolo Frumento
Maintainer: Paolo Frumento <paolo.frumento@ki.se>
Description: Estimation of quantile regression models for survival data.
Depends: survival, pch (>= 1.2)
Imports: stats
Suggests: car, lmtest
License: GPL-2
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-19 20:45:07 UTC; paofru
Repository: CRAN
Date/Publication: 2016-08-20 10:31:34

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Fri, 19 Aug 2016

New package sparsebn with initial version 0.0.1
Package: sparsebn
Title: Learning Sparse Bayesian Networks from High-Dimensional Data
Version: 0.0.1
Date: 2016-08-12
Authors@R: person("Bryon", "Aragam", email = "sparsebn@gmail.com", role = c("aut", "cre"))
Maintainer: Bryon Aragam <sparsebn@gmail.com>
Description: Fast methods for learning sparse Bayesian networks from high-dimensional data using sparse regularization. Designed to incorporate mixed experimental and observational data with thousands of variables with either continuous or discrete observations.
Depends: R (>= 3.2.3), sparsebnUtils, ccdrAlgorithm, discretecdAlgorithm
Suggests: knitr, rmarkdown, mvtnorm, igraph, graph, testthat
URL: https://github.com/itsrainingdata/sparsebn
BugReports: https://github.com/itsrainingdata/sparsebn/issues
License: GPL (>= 2)
RoxygenNote: 5.0.1
VignetteBuilder: knitr
LazyData: true
NeedsCompilation: no
Packaged: 2016-08-19 15:30:13 UTC; Zigmund-2
Author: Bryon Aragam [aut, cre]
Repository: CRAN
Date/Publication: 2016-08-19 21:42:53

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New package apa with initial version 0.1.0
Package: apa
Type: Package
Title: Format Outputs of Statistical Tests According to APA Guidelines
Version: 0.1.0
Authors@R: person("Daniel", "Gromer", email = "dgromer@mailbox.org", role = c("aut", "cre"))
Description: Formatter functions in the 'apa' package take the return value of a statistical test function, e.g. a call to chisq.test() and return a string formatted according to the guidelines of the APA (American Psychological Association).
URL: https://github.com/dgromer/apa
BugReports: https://github.com/dgromer/apa/issues
License: GPL (>= 3)
Depends: R (>= 3.1.0)
Imports: dplyr (>= 0.4), magrittr, purrr, rmarkdown, stringr
Suggests: afex (>= 0.14), ez, testthat, knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-19 18:05:34 UTC; daniel
Author: Daniel Gromer [aut, cre]
Maintainer: Daniel Gromer <dgromer@mailbox.org>
Repository: CRAN
Date/Publication: 2016-08-19 21:46:19

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New package okcupiddata with initial version 0.1.0
Package: okcupiddata
Title: OkCupid Profile Data for Introductory Statistics and Data Science Courses
Version: 0.1.0
Authors@R: c( person("Albert Y.", "Kim", email = "albert.ys.kim@gmail.com", role = c("aut", "cre")), person("Adriana", "Escobedo-Land", email = "land.escbd@gmail.com", role = "aut") )
Description: Cleaned profile data from "OkCupid Profile Data for Introductory Statistics and Data Science Courses" (Journal of Statistics Education 2015 <http://www.amstat.org/publications/jse/v23n2/kim.pdf>).
Depends: R (>= 2.10)
License: CC0
Encoding: UTF-8
LazyData: TRUE
URL: http://github.com/rudeboybert/okcupiddata
BugReports: https://github.com/rudeboybert/okcupiddata/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-19 13:41:04 UTC; aykim
Author: Albert Y. Kim [aut, cre], Adriana Escobedo-Land [aut]
Maintainer: Albert Y. Kim <albert.ys.kim@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-19 17:05:06

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New package iprior with initial version 0.6.1
Package: iprior
Type: Package
Title: Linear Regression using I-Priors
Version: 0.6.1
Date: 2016-08-19
Author: Haziq Jamil
Maintainer: Haziq Jamil <haziq.jamil@gmail.com>
Description: In a linear regression setting, priors can be assigned to the regression function using a vector space framework, and the posterior estimate of the regression function obtained. I-priors are a class of such priors based on the principle of maximum entropy. While the main interest of I-prior modelling is prediction, inference is also possible, e.g. via log-likelihood ratio tests. This package supports both formula and non-formula based input. Estimation is mainly done via an EM algorithm, but there is flexibility in using any R optimiser to maximise the log-likelihood computed by the kernel loader function.
Imports: methods, RColorBrewer, Rcpp (>= 0.12.6)
LinkingTo: Rcpp, RcppEigen
License: GPL (>= 3.0)
Suggests: knitr, MASS, rmarkdown, testthat
RoxygenNote: 5.0.1
VignetteBuilder: knitr
URL: http://github.com/haziqjamil/iprior
BugReports: http://github.com/haziqjamil/iprior/issues
NeedsCompilation: yes
Packaged: 2016-08-19 12:06:26 UTC; haziqjamil
Repository: CRAN
Date/Publication: 2016-08-19 17:05:03

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New package sentimentr with initial version 0.2.3
Package: sentimentr
Title: Calculate Text Polarity Sentiment
Version: 0.2.3
Authors@R: c(person("Tyler", "Rinker", email = "tyler.rinker@gmail.com", role = c("aut", "cre")))
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Description: Calculate text polarity sentiment at the sentence level and optionally aggregate by rows or grouping variable(s).
Depends: R (>= 3.1.0)
Suggests: testthat
Imports: data.table, ggplot2, graphics, grid, methods, stats, stringi, syuzhet, utils
Date: 2016-08-19
License: GPL-2
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-19 04:26:35 UTC; Tyler
Author: Tyler Rinker [aut, cre]
Repository: CRAN
Date/Publication: 2016-08-19 14:02:38

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New package NMI with initial version 1.0
Package: NMI
Title: Normalized Mutual Information of Community Structure in Network
Version: 1.0
Authors@R: person("Tianhao", "Wu", email = "tianhao.wu@yale.edu", role = c("aut", "cre"))
Description: Calculates the normalized mutual information (NMI) of two community structures in network analysis.
Depends: R (>= 3.2.2)
License: GNU General Public License version 2
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-19 05:35:05 UTC; tianhaowu
Author: Tianhao Wu [aut, cre]
Maintainer: Tianhao Wu <tianhao.wu@yale.edu>
Repository: CRAN
Date/Publication: 2016-08-19 14:04:49

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Thu, 18 Aug 2016

New package kamila with initial version 0.1.1.1
Package: kamila
Type: Package
Version: 0.1.1.1
Date: 2016-08-18
Authors@R: c( person("Alexander", "Foss", email = "alexanderhfoss@gmail.com", role = c("aut", "cre")), person("Marianthi", "Markatou", role = c("aut")) )
Author: Alexander Foss [aut, cre], Marianthi Markatou [aut]
Maintainer: Alexander Foss <alexanderhfoss@gmail.com>
Title: Methods for Clustering Mixed-Type Data
Description: Implements methods for clustering mixed-type data, specifically combinations of continuous and nominal data. Special attention is paid to the often-overlooked problem of equitably balancing the contribution of the continuous and categorical variables. This package implements KAMILA clustering, a novel method for clustering mixed-type data in the spirit of k-means clustering. It does not require dummy coding of variables, and is efficient enough to scale to rather large data sets. Also implemented is Modha-Spangler clustering, which uses a brute-force strategy to maximize the cluster separation simultaneously in the continuous and categorical variables.
Depends: R (>= 3.0.0)
License: GPL-3
URL: https://github.com/ahfoss/kamila
BugReports: https://github.com/ahfoss/kamila/issues
Imports: stats, abind, KernSmooth, gtools, Rcpp, mclust, plyr
LinkingTo: Rcpp
Suggests: testthat, clustMD, ggplot2, Hmisc
RoxygenNote: 5.0.1
Packaged: 2016-08-18 17:46:08 UTC; Alexander
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-08-19 00:46:49

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New package imp4p with initial version 0.1
Package: imp4p
Type: Package
Title: Imputation for Proteomics
Version: 0.1
Date: 2016-08-17
Author: Quentin Giai Gianetto
Maintainer: Quentin Giai Gianetto <quentin2g@yahoo.fr>
Description: Functions to analyse missing value mechanisms and to impute data sets in the context of bottom-up MS-based proteomics.
License: GPL-3
Depends: R (>= 3.3.0), Iso, stats, truncnorm, imputeLCMD
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2016-08-18 14:49:01 UTC; QGIAIGIA
Repository: CRAN
Date/Publication: 2016-08-18 17:23:38

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New package ldstatsHD with initial version 1.0.0
Package: ldstatsHD
Type: Package
Title: Linear Dependence Statistics for High-Dimensional Data
Version: 1.0.0
Date: 2016-08-16
Author: Adria Caballe <a.caballe@sms.ed.ac.uk>
Maintainer: Adria Caballe <a.caballe@sms.ed.ac.uk>
Description: Statistical methods related to the estimation and testing of multiple correlation, partial correlation and regression coefficient matrices when data is high-dimensional.
License: GPL-3
LazyLoad: no
Repository: CRAN
Depends: R (>= 2.10.0), huge
Imports: RBGL, cluster, camel, igraph, VGAM, evd, MASS, Matrix, fExtremes, corpcor, robustbase
Suggests: JGL
NeedsCompilation: no
Packaged: 2016-08-18 11:49:01 UTC; adriacaballe
Date/Publication: 2016-08-18 15:57:55

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New package electionsBR with initial version 0.1.1
Package: electionsBR
Type: Package
Title: R Functions to Download and Clean Brazilian Electoral Data
Version: 0.1.1
Authors@R: c( person("Denisson", "Silva", , "denissonsilva@ufmg.br", c("aut", "cre")), person("Fernando", "Meireles", , "fmeireles@ufmg.br", "aut"), person("Beatriz", "Costa", ,"bea.s.costa@gmail.com", "ctb") )
Description: Offers a set of functions that automatically downloads and aggregates election data from Brazil, directly from the Superior Electoral Court website. Among others, there are data available on local and federal elections for all positions (city councillor, mayor, state deputy, federal deputy, governor, and president) disaggregated by state of the Federation, city, zone, and polling stations. In addition, data on the verification (blank votes, null votes, abstention) and the candidates' background are also available.
License: GPL (>= 2)
Depends: R (>= 2.10)
Imports: magrittr
LazyData: TRUE
URL: https://github.com/silvadenisson/electionsBR
BugReports: https://github.com/silvadenisson/electionsBR/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-18 12:42:16 UTC; User
Author: Denisson Silva [aut, cre], Fernando Meireles [aut], Beatriz Costa [ctb]
Maintainer: Denisson Silva <denissonsilva@ufmg.br>
Repository: CRAN
Date/Publication: 2016-08-18 15:57:52

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New package petrinetR with initial version 0.1.0
Package: petrinetR
Type: Package
Title: Building, Visualizing, Exporting and Replaying Petri Nets
Version: 0.1.0
Date: 2016-08-18
Author: Gert Janssenswillen
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Description: Functions for the construction of Petri Nets. Petri Nets can be replayed by firing enabled transitions. Silent transitions will be hidden by the execution handler. Also includes functionalities for the visualization of Petri Nets and export of Petri Nets to PNML (Petri Net Markup Language) files.
License: GPL-3
Depends: R(>= 3.0.0)
LazyData: true
Imports: dplyr, visNetwork
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-18 11:09:26 UTC; lucp8407
Repository: CRAN
Date/Publication: 2016-08-18 13:38:52

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New package catlearn with initial version 0.3
Package: catlearn
Type: Package
Title: Formal Modeling for Psychology
Version: 0.3
Date: 2016-08-17
Author: Andy Wills
Maintainer: Andy Wills <andy@willslab.co.uk>
Description: Formal psychological models, independently-replicated data sets against which to test them, and simulation archives.
License: GPL (>= 2)
Imports: Rcpp (>= 0.12.6)
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2016-08-18 09:22:26 UTC; andy
Repository: CRAN
Date/Publication: 2016-08-18 12:40:30

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New package IHSEP with initial version 0.0
Package: IHSEP
Type: Package
Title: Inhomogeneous Self-Exciting Process
Version: 0.0
Date: 2016-08-17
Author: Feng Chen <feng.chen@unsw.edu.au>
Maintainer: Feng Chen <feng.chen@unsw.edu.au>
Description: Simulate an inhomogeneous self-exciting process (IHSEP), or Hawkes process, with a given (time-varying) baseline intensity and an excitation function. Calculate the likelihood of an IHSEP with given baseline intensity and excitation functions for an (increasing) sequence of event times. Calculate the point process residuals (integral transforms of the original event times). Calculate the mean intensity process.
License: GPL (>= 2)
LinkingTo: Rcpp
Imports: lpint,Rcpp
NeedsCompilation: yes
Packaged: 2016-08-17 22:38:32 UTC; z3243864
Repository: CRAN
Date/Publication: 2016-08-18 10:02:17

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Wed, 17 Aug 2016

New package GAS with initial version 0.1.1
Package: GAS
Type: Package
Title: Generalized Autoregressive Score Models
Version: 0.1.1
Author: Leopoldo Catania [aut,cre], Kris Boudt [ctb], David Ardia [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@uniroma2.it>
Description: Simulate, Estimate and Forecast using univariate and multivariate GAS models.
License: GPL-3
LazyData: TRUE
Imports: Rcpp (>= 0.12.2)
LinkingTo: Rcpp, RcppArmadillo
Depends: R (>= 2.10), Rsolnp, methods, MASS, xts, numDeriv, zoo
NeedsCompilation: yes
Packaged: 2016-08-17 13:01:47 UTC; Leopoldo
Repository: CRAN
Date/Publication: 2016-08-17 20:03:14

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New package banxicoR with initial version 0.9.0
Package: banxicoR
Type: Package
Title: Download Data from the Bank of Mexico
Version: 0.9.0
Author: Eduardo Flores
Maintainer: Eduardo Flores <eduardo@enelmargen.org>
Description: Provides functions to scrape IQY calls to Bank of Mexico, downloading and ordering the data conveniently.
License: CC0
Imports: rvest, stringr, xml2
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-17 13:39:01 UTC; eduardoflores
Repository: CRAN
Date/Publication: 2016-08-17 20:05:25

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New package phybreak with initial version 0.1.0
Package: phybreak
Type: Package
Title: Analysis of Outbreaks with Sequence Data
Version: 0.1.0
Date: 2016-08-15
Authors@R: person("Don", "Klinkenberg", email = "don@xs4all.nl", role = c("aut", "cre"))
Description: Implementation the outbreak analysis method described by Klinkenberg et al (2016) <doi:10.1101/069195>. Simulate outbreaks, analyse datasets by creating samples from the posterior distribution with a Markov-Chain Monte Carlo sampler, and summarize the output.
License: GPL (>= 2)
LazyData: TRUE
Depends: R(>= 3.1.0), phangorn, ape
Imports: Rcpp (>= 0.12.1), methods, stats, utils
Suggests: coda, phytools, OutbreakTools
LinkingTo: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-17 10:05:00 UTC; don
Author: Don Klinkenberg [aut, cre]
Maintainer: Don Klinkenberg <don@xs4all.nl>
Repository: CRAN
Date/Publication: 2016-08-17 12:23:57

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New package opera with initial version 1.0
Package: opera
Type: Package
Title: Online Prediction by Expert Aggregation
Version: 1.0
Date: 2016-08-11
Author: Pierre Gaillard [cre, aut], Yannig Goude [aut]
Maintainer: Pierre Gaillard <pierre@gaillard.me>
Copyright: EDF R&D 2012-2015
Description: Misc methods to form online predictions, for regression-oriented time-series, by combining a finite set of forecasts provided by the user.
License: LGPL
URL: http://pierre.gaillard.me/opera.html
BugReports: https://github.com/dralliag/opera/issues
Depends: R (>= 3.1.0)
Imports: quadprog, quantreg, RColorBrewer
Suggests: testthat, splines, caret, mgcv, survival, knitr, gbm
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-17 09:16:55 UTC; Pierre
Repository: CRAN
Date/Publication: 2016-08-17 12:26:24

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New package RRate with initial version 1.0
Package: RRate
Type: Package
Title: Estimating Replication Rate for Genome-Wide Association Studies
Version: 1.0
Date: 2016-08-16
Author: Wei Jiang, Jing-Hao Xue and Weichuan Yu
Maintainer: Wei Jiang <wjiangaa@connect.ust.hk>
Description: Replication Rate (RR) is the probability of replicating a statistically significant association in genome-wide association studies. This R-package provide the estimation method for replication rate which makes use of the summary statistics from the primary study. We can use the estimated RR to determine the sample size of the replication study, and to check the consistency between the results of the primary study and those of the replication study.
License: GPL-3
Depends: R (>= 2.10), splines
NeedsCompilation: no
Packaged: 2016-08-17 03:41:41 UTC; Brian
Repository: CRAN
Date/Publication: 2016-08-17 10:40:27

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New package rpinterest with initial version 0.3.1
Package: rpinterest
Type: Package
Title: Access Pinterest API
Version: 0.3.1
Date: 2016-08-17
Author: Colin FAY
Maintainer: Colin FAY <contact@colinfay.me>
Description: Get information (boards, pins and users) from the Pinterest <http://www.pinterest.com> API.
License: GPL-3
LazyData: TRUE
Imports: httr, rjson, magrittr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-17 07:26:06 UTC; JonathanMorel
Repository: CRAN
Date/Publication: 2016-08-17 11:00:03

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New package GenomicTools with initial version 0.1
Package: GenomicTools
Type: Package
Title: Collection of Tools for Genomic Data Analysis
Version: 0.1
Date: 2016-08-15
Author: Daniel Fischer
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>
Depends: R (>= 3.2), gMWT (>= 1.0), Rcpp (>= 0.9.13), data.table (>= 1.9.6)
Imports: circlize, stringr, snpStats
LinkingTo: Rcpp, RcppArmadillo
Description: A loose collection of tools for the analysis of expression and genotype data, currently with the main focus on (e)QTL and MDR analysis.
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: yes
Packaged: 2016-08-17 05:31:59 UTC; fischuu
Repository: CRAN
Date/Publication: 2016-08-17 10:40:26

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New package BuyseTest with initial version 1.0
Package: BuyseTest
Type: Package
Title: Generalized Pairwise Comparisons
Version: 1.0
Date: 2016-08-15
Author: Brice Ozenne[aut, cre], Julien Peron[aut]
Maintainer: brice ozenne <brice.ozenne@orange.fr>
Description: Implementation of the Generalized Pairwise Comparisons. This test enables to compare two groups of observations in randomized trials(e.g treated vs. control patients) on several prioritized outcomes. Pairwise comparisons require consideration of all possible pairs of individuals, one taken from the treatment group and the other taken from the control group. The outcomes of the two individuals forming a pair are compared. Thresholds of minimal clinically significant differences can be defined. It is possible to analyse simultaneously several outcomes by prioritizing the variables that capture them. The highest priority is assigned to the variable considered the most clinically relevant. A natural way of handling uninformative or neutral pairs is to consider the outcomes in descending order of priority: whenever a pair is uninformative or neutral for an outcome of higher priority, the outcomes of lower priority are examined In the case of time-to-event endpoint, four methods to handle censored observations are available in this package (Gehan, Peto, Efron, and Peron).
License: GPL-3
Depends: R (>= 2.10), survival, Rcpp, data.table, snowfall
Imports: methods, lava, stats, stats4, tcltk, utils
Suggests: testthat
LinkingTo: Rcpp, RcppArmadillo
Collate: 'BuyseTest-package.R' 'FCT_BuyseTest.R' 'FCT_Valid.R' 'FCT_simul.R' 'FCT_support.R' 'FCTi-computation.R' 'FCTi-initilization.R' 'FCTi-print.R' 'OBJECT_BuyseTest.R' 'METHOD_get.R' 'METHOD_summary.R' 'METHOD_print.R' 'RcppExports.R'
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-17 05:19:17 UTC; brice
Repository: CRAN
Date/Publication: 2016-08-17 10:40:20

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Tue, 16 Aug 2016

New package multigraph with initial version 0.30
Package: multigraph
Type: Package
Title: Plot and Manipulate Multigraphs
Version: 0.30
Depends: R (>= 3.3.1), multiplex (>= 2.0)
Imports: methods
Date: 2016-08-16
Authors@R: person(given = "Antonio", family = "Rivero Ostoic", role = c("aut", "cre"), email = "jaro@econ.au.dk")
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <jaro@econ.au.dk>
Description: Functions to plot and manipulate multigraphs and bipartite graphs with different layout options.
URL: http://github.com/mplex/multigraph/
BugReports: https://github.com/mplex/multigraph/issues/new/
Repository: CRAN
License: GPL-3
NeedsCompilation: no
Packaged: 2016-08-16 10:51:42 UTC; jari
Date/Publication: 2016-08-17 02:17:10

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New package optimr with initial version 2016-8.16
Package: optimr
Version: 2016-8.16
Date: 2016-08-16
Title: A Replacement and Extension of the 'optim' Function
Authors@R: c( person(given = c("John", "C"), family = "Nash", role = c("aut", "cre"), email = "nashjc@uottawa.ca"), person(given = "Ravi", family = "Varadhan", role = "aut", email = "RVaradhan@jhmi.edu"), person(given = "Gabor", family = "Grothendieck", role = "ctb", email = "ggrothendieck@gmail.com") )
Author: John C Nash [aut, cre], Ravi Varadhan [aut], Gabor Grothendieck [ctb]
Maintainer: John C Nash <nashjc@uottawa.ca>
Description: Provides a test of replacement and extension of the optim() function to unify and streamline optimization capabilities in R for smooth, possibly box constrained functions of several or many parameters. This version has a reduced set of methods and is intended to be on CRAN.
License: GPL-2
LazyLoad: Yes
Imports: optextras, numDeriv, setRNG, Rvmmin, Rcgmin
NeedsCompilation: no
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Packaged: 2016-08-16 21:05:26 UTC; john
Repository: CRAN
Date/Publication: 2016-08-17 00:31:27

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New package ModelMetrics with initial version 1.0.0
Package: ModelMetrics
Title: Rapid Calculation of Model Metrics
Version: 1.0.0
Authors@R: person("Tyler", "Hunt", email = "thunt@snapfinance.com", role = c("aut", "cre"))
Description: Collection of metrics for evaluating models written in C++ using 'Rcpp'.
Depends: R (>= 3.2.2)
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
LinkingTo: Rcpp
Imports: Rcpp
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: yes
Packaged: 2016-08-16 22:47:34 UTC; snapadmin
Author: Tyler Hunt [aut, cre]
Maintainer: Tyler Hunt <thunt@snapfinance.com>
Repository: CRAN
Date/Publication: 2016-08-17 01:11:51

More information about ModelMetrics at CRAN
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New package fastcmh with initial version 0.1.9
Package: fastcmh
Title: Significant Interval Discovery with Categorical Covariates
Version: 0.1.9
Author: Felipe Llinares Lopez, Dean Bodenham
Maintainer: Dean Bodenham <deanbodenhambsse@gmail.com>
Description: A method which uses the Cochran-Mantel-Haenszel test with significant pattern mining to detect intervals in binary genotype data which are significantly associated with a particular phenotype, while accounting for categorical covariates.
Depends: bindata
License: GPL-2 | GPL-3
LinkingTo: Rcpp
Imports: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-16 08:25:27 UTC; dean
Repository: CRAN
Date/Publication: 2016-08-17 01:05:14

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New package timelineS with initial version 0.1.0
Package: timelineS
Type: Package
Title: Timeline and Time Duration-Related Tools
Version: 0.1.0
Date: 2016-08-15
Author: Dahee Lee [aut, cre], Dustin Tingley [aut]
Maintainer: Dahee Lee <dhlee99@gmail.com>
Description: An easy tool for plotting annotated timelines, grouped timelines, and exploratory graphics (boxplot/histogram/density plot/scatter plot/line plot). Filter, summarize date data by duration and convert to calendar units.
License: GPL-2
LazyData: TRUE
Imports: base, graphics, magrittr, dplyr, lubridate, ggplot2, stats
Depends: R (>= 3.1.0)
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-16 00:56:44 UTC; Dahee
Repository: CRAN
Date/Publication: 2016-08-16 19:14:03

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New package SqlRender with initial version 1.1.7
Package: SqlRender
Type: Package
Title: Rendering Parameterized SQL and Translation to Dialects
Version: 1.1.7
Date: 2016-08-15
Author: Martijn J. Schuemie [aut, cre], Marc A. Suchard [aut],
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Description: A rendering tool for parameterized SQL that also translates into different SQL dialects. These dialects include Sql Server, Oracle, PostgreSql, Amazon RedShift, and Microsoft PDW.
License: Apache License 2.0
VignetteBuilder: knitr
URL: https://github.com/OHDSI/SqlRender
BugReports: https://github.com/OHDSI/SqlRender/issues
Imports: rJava
Suggests: testthat, knitr, rmarkdown
LazyData: false
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-16 11:23:26 UTC; mschuemi
Repository: CRAN
Date/Publication: 2016-08-16 19:47:24

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New package IMFData with initial version 0.1.0
Package: IMFData
Type: Package
Title: R Interface for International Monetary Fund(IMF) Data API
Version: 0.1.0
Date: 2016-08-15
Authors@R: person("Ming-Jer", "Lee", email = "mingjerli@gmail.com", role = c("aut", "cre"))
Depends: R (>= 3.3.0)
Imports: httr, jsonlite, plyr
Description: Search, extract and formulate IMF's datasets.
License: MIT + file LICENSE
LazyData: TRUE
KeepSource: TRUE
URL: https://github.com/mingjerli/IMFData
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-16 02:17:36 UTC; mingjerli
Author: Ming-Jer Lee [aut, cre]
Maintainer: Ming-Jer Lee <mingjerli@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-16 19:13:56

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New package getlandsat with initial version 0.1.0
Package: getlandsat
Type: Package
Title: Get Landsat 8 Data from Amazon Public Data Sets
Description: Get Landsat 8 Data from Amazon Web Services ('AWS') public data sets (<https://aws.amazon.com/public-data-sets/landsat/>). Includes functions for listing images and fetching them, and handles caching to prevent unnecessary additional requests.
Version: 0.1.0
Authors@R: c(person("Scott", "Chamberlain", role = c("aut", "cre"), email = "myrmecocystus@gmail.com"))
License: MIT + file LICENSE
URL: https://github.com/ropenscilabs/getlandsat
BugReports: https://github.com/ropenscilabs/getlandsat/issues
Imports: methods, readr (>= 1.0.0), httr (>= 1.2.0), xml2 (>= 1.0.0), data.table, tibble, rappdirs
Suggests: roxygen2 (>= 5.0.1), testthat, knitr, covr, raster
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-16 00:32:42 UTC; sacmac
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-16 19:14:01

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New package ctmcd with initial version 0.9
Package: ctmcd
Type: Package
Title: Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data
Version: 0.9
Date: 2016-08-08
Author: Marius Pfeuffer
Maintainer: Marius Pfeuffer <marius.pfeuffer@fau.de>
Description: Functions for estimating Markov generator matrices from discrete-time observations. The implemented approaches comprise diagonal adjustment, weighted adjustment and quasi-optimization of matrix logarithm based candidate solutions, an expectation-maximization algorithm as well as a Gibbs sampler.
License: GPL-3
Imports: Rcpp (>= 0.12.6), expm, numDeriv
Suggests: knitr, rmarkdown
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-08-13 13:41:55 UTC; Stefan
Repository: CRAN
Date/Publication: 2016-08-16 19:47:33

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New package complexplus with initial version 1.0
Package: complexplus
Type: Package
Title: Functions of Complex or Real Variable
Version: 1.0
Date: 2016-08-16
Author: Albert Dorador and Uffe Høgsbro Thygesen
Maintainer: Albert Dorador <albert.dorador@estudiant.upc.edu>
Description: Extension of several functions to the complex domain, including the matrix exponential and logarithm, and the determinant.
Depends: R (>= 3.1.0)
Imports: expm (>= 0.999-0)
License: GPL-2
ByteCompile: true
Encoding: UTF-8
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-16 06:01:26 UTC; Albert
Repository: CRAN
Date/Publication: 2016-08-16 19:14:00

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Mon, 15 Aug 2016

New package wand with initial version 0.2.0
Package: wand
Type: Package
Title: Retrieve 'Magic' Attributes from Files and Directories
Version: 0.2.0
Date: 2016-08-14
Author: Bob Rudis (@hrbrmstr), Christos Zoulas [libmagic], Mans Rullgard [file], Jonathan Ong <me@jongleberry.com> [mime-db]
Maintainer: Bob Rudis <bob@rud.is>
Description: The 'libmagic' library provides functions to determine 'MIME' type and other metadata from files through their "magic" attributes. This is useful when you do not wish to rely solely on the honesty of a user or the extension on a file name. It also incorporates other metadata from the mime-db database <https://github.com/jshttp/mime-db>.
URL: http://github.com/hrbrmstr/wand
BugReports: https://github.com/hrbrmstr/wand/issues
NeedsCompilation: yes
LazyData: true
SystemRequirements: libmagic (>= 5.14) for Unix/Linux/macOS; Rtools 3.3+ for Windows
License: AGPL
Suggests: testthat
Depends: R (>= 3.2.0)
Imports: dplyr, purrr, rappdirs, stats, stringi, tibble, tidyr, utils, Rcpp
Encoding: UTF-8
LinkingTo: Rcpp
RoxygenNote: 5.0.1
Packaged: 2016-08-15 19:46:46 UTC; bob
Repository: CRAN
Date/Publication: 2016-08-16 02:08:24

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New package miscor with initial version 0.1-0
Package: miscor
Type: Package
Title: Miscellaneous Functions for the Correlation Coefficient
Version: 0.1-0
Date: 2016-08-15
Authors@R: person(given = "Takuya", family = "Yanagida", email="takuya.yanagida@univie.ac.at", role = c("cre","aut"))
Author: Takuya Yanagida [cre, aut]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Description: Statistical test for the product-moment correlation coefficient based on H0: rho = rho0 including sample size computation, statistical test for comparing the product-moment correlation coefficient in independent and dependent samples, partial and semipartial correlation, sequential triangular test for the product-moment correlation coefficient, and simulation of bivariate normal and non-normal distribution with a specified correlation.
License: GPL-3
LazyLoad: yes
LazyData: true
Depends: R (>= 3.0)
Imports: PoisNonNor
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-15 16:09:06 UTC; Takuya
Repository: CRAN
Date/Publication: 2016-08-16 02:17:58

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New package statprograms with initial version 0.1.0
Package: statprograms
Title: Graduate Statistics Program Datasets
Version: 0.1.0
Authors@R: person("Brett", "Klamer", email = "code@brettklamer.com", role = c("aut", "cre"))
Description: A small collection of data on graduate statistics programs from the United States.
License: MIT + file LICENSE
Depends: R (>= 2.10.0)
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-14 22:43:58 UTC; x
Author: Brett Klamer [aut, cre]
Maintainer: Brett Klamer <code@brettklamer.com>
Repository: CRAN
Date/Publication: 2016-08-15 16:26:11

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New package RQGIS with initial version 0.1.0
Package: RQGIS
Date: 2016-08-15
Type: Package
Title: RQGIS: Integrating R with QGIS
Version: 0.1.0
Authors@R: c( person("Jannes", "Muenchow", , "jannes.muenchow@uni-jena.de", c("aut", "cre")), person("Patrick", "Schratz", , "patrick.schratz@uni-jena.de", role = "aut"))
Description: Package RQGIS establishes an interface between R and QGIS, i.e. it allows the user to access QGIS functionalities from the R console. It achieves this by using the QGIS Python API via the command line. Hence, RQGIS extends R's statistical power by the incredible vast geo-functionality of QGIS (including also GDAL, SAGA- and GRASS-GIS among other third-party providers). This in turn creates a powerful environment for advanced and innovative (geo-)statistical geocomputing.
URL: https://github.com/jannes-m/RQGIS
BugReports: https://github.com/jannes-m/RQGIS/issues
License: GPL-3
LazyData: TRUE
Encoding: UTF-8
RoxygenNote: 5.0.1
Depends: R (>= 3.2.0)
Imports: raster, RCurl, rgdal, sp, XML
SystemRequirements: Python (>= 2.7), QGIS (>= 2.12)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-15 13:43:29 UTC; pi37pat
Author: Jannes Muenchow [aut, cre], Patrick Schratz [aut]
Maintainer: Jannes Muenchow <jannes.muenchow@uni-jena.de>
Repository: CRAN
Date/Publication: 2016-08-15 16:11:05

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New package PanJen with initial version 0.1
Package: PanJen
Version: 0.1
Date: 2016-08-09
Title: A Semi-Parametric Test for Specifying Functional Form
Author: Toke Emil Panduro <tepp@ifro.ku.dk>, Cathrine Ulla Jensen <cuj@ifro.ku.dk>
Maintainer: Cathrine Ulla Jensen <cuj@ifro.ku.dk>
Description: A central decision in a parametric regression is how to specify the relation between an dependent variable and each explanatory variable. This package provides a semi-parametric tool for comparing different transformations of an explanatory variables in a parametric regression. The functions is relevant in a situation, where you would use a box-cox or Box-Tidwell transformations. In contrast to the classic power-transformations, the methods in this package allows for theoretical driven user input and the possibility to compare with a non-parametric transformation.
Depends: R (>= 3.1.0), mgcv, RColorBrewer, Formula, lasso2
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
NeedsCompilation: no
Packaged: 2016-08-15 07:18:47 UTC; msq431
Repository: CRAN
Date/Publication: 2016-08-15 15:56:48

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New package microclass with initial version 1.0
Encoding: latin1
Package: microclass
Type: Package
Title: Methods for Taxonomic Classification of Prokaryotes
Version: 1.0
Date: 2016-08-15
Author: Kristian Hovde Liland, Hilde Vinje, Lars Snipen
Maintainer: Lars Snipen <lars.snipen@nmbu.no>
Description: Functions for assigning 16S sequence data to a taxonomic level in the tree-of-life for prokaryotes.
License: GPL (>= 2)
Depends: R (>= 3.0.2), microseq, microcontax
Imports: Rcpp (>= 0.11.1), RcppParallel
LinkingTo: Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, RcppParallel, progress
SystemRequirements: GNU make
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-08-15 09:37:53 UTC; larssn
Repository: CRAN
Date/Publication: 2016-08-15 16:00:49

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New package iemisctext with initial version 0.9.9
Package: iemisctext
Title: Irucka Embry's Miscellaneous Text Collection
Version: 0.9.9
Depends: R (>= 3.1.0)
Suggests: install.load, tm, NLP, knitr, rmarkdown
Author: Irucka Embry [aut, cre]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Description: The eclectic collection includes the following written pieces: "The War Prayer" by Mark Twain, "War Is A Racket" by Major General Smedley Butler, "The Mask of Anarchy: Written on the Occasion of the Massacre at Manchester" by Percy Bysshe Shelley, "Connect the D.O.T.S." by Obiora Embry, "Untitled: Climate Strange" by Irucka Ajani Embry, and "Untitled: Us versus Them or People Screwing over Other People (as we all live on one Earth and there is no "us versus them" in the actual Ultimate Reality}" by Irucka Ajani Embry.
URL: https://gitlab.com/iembry/iemisctext
BugReports: https://gitlab.com/iembry/iemisctext/issue
License: GPL (>= 3)
Copyright: See COPYRIGHT file
Encoding: UTF-8
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-08-15 05:19:34 UTC; uoxyh
Repository: CRAN
Date/Publication: 2016-08-15 15:53:17

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Sun, 14 Aug 2016

New package feedeR with initial version 0.0.4
Package: feedeR
Type: Package
Title: Read RSS/Atom Feeds from R
Version: 0.0.4
Authors@R: person("Andrew", "Collier", email = "andrew@exegetic.biz", role = c("aut", "cre"))
Description: Retrieve data from RSS/Atom feeds.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: RCurl, dplyr, XML, lubridate
Suggests: testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-14 12:03:35 UTC; colliera
Author: Andrew Collier [aut, cre]
Maintainer: Andrew Collier <andrew@exegetic.biz>
Repository: CRAN
Date/Publication: 2016-08-14 16:07:45

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New package birdnik with initial version 0.1.0
Package: birdnik
Type: Package
Title: Connector for the Wordnik API
Version: 0.1.0
Author: Oliver Keyes
Maintainer: Oliver Keyes <ironholds@gmail.com>
Description: A connector to the API for 'Wordnik' <https://whoapi.com>, a dictionary service that also provides bigram generation, word frequency data, and a whole host of other functionality.
License: MIT + file LICENSE
LazyData: TRUE
RoxygenNote: 5.0.1
Suggests: testthat
Depends: httr
Date: 2016-08-13
URL: https://github.com/Ironholds/birdnik
BugReports: https://github.com/Ironholds/birdnik/issues
NeedsCompilation: no
Packaged: 2016-08-13 18:45:19 UTC; ironholds
Repository: CRAN
Date/Publication: 2016-08-14 09:10:10

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Sat, 13 Aug 2016

New package wordspace with initial version 0.2-0
Package: wordspace
Type: Package
Title: Distributional Semantic Models in R
Version: 0.2-0
Date: 2016-08-08
Author: Stefan Evert [http://www.stefan-evert.de/]
Maintainer: Stefan Evert <stefan.evert@fau.de>
Depends: R (>= 3.0.0), Matrix
Imports: Rcpp (>= 0.11.0), sparsesvd, iotools, methods, stats, utils, graphics, grDevices, cluster, MASS
LinkingTo: Rcpp
Description: An interactive laboratory for research on distributional semantic models ('DSM', see <https://en.wikipedia.org/wiki/Distributional_semantics> for more information).
License: GPL-3
URL: http://wordspace.r-forge.r-project.org/
LazyData: yes
LazyDataCompression: xz
Suggests: knitr, rmarkdown, tm
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-08-13 14:54:14 UTC; evert
Repository: CRAN
Date/Publication: 2016-08-13 18:12:55

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New package xxIRT with initial version 1.0.1
Package: xxIRT
Type: Package
Title: Item Response Theory
Version: 1.0.1
Date: 2016-08-12
Authors@R: c(person("Xiao", "Luo", role=c("aut","cre"), email="xluo1986@gmail.com"))
Author: Xiao Luo [aut, cre]
Maintainer: Xiao Luo <xluo1986@gmail.com>
Description: An implementation of Item Response Theory (IRT) in R, comprising of five modules:(1) common and utility functions, (2) estimation/calibration procedures, (3) computerized adaptive testing (CAT) framework, (4) automated test assembly (ATA) framework, and (5) multistage testing (MST) framework. See documentation at https://github.com/xluo11/xxIRT/blob/master/README.md.
License: GPL (>= 2)
Depends: R (>= 3.1.0)
URL: https://github.com/xluo11/xxIRT
BugReports: http://github.com/xluo11/xxIRT
Imports: ggplot2, reshape2, lpSolveAPI, stats, utils
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-13 14:25:31 UTC; xiaoluo
Repository: CRAN
Date/Publication: 2016-08-13 16:53:24

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New package colourpicker with initial version 0.1
Package: colourpicker
Type: Package
Title: A Colour Picker Widget for Shiny Apps, RStudio, R-markdown, and 'htmlwidgets'
Version: 0.1
Authors@R: person("Dean", "Attali", email = "daattali@gmail.com", role = c("aut", "cre"))
Description: A colour picker that can be used as an input in Shiny apps or R-markdown documents. A colour picker RStudio addin is provided to let you select colours for use in your R code. The colour picker is also availble as an 'htmlwidgets' widget.
URL: https://github.com/daattali/colourpicker
BugReports: https://github.com/daattali/colourpicker/issues
Depends: R (>= 3.1.0)
Imports: htmltools, htmlwidgets (>= 0.7), miniUI (>= 0.1.1), shiny (>= 0.11.1), shinyjs
Suggests: knitr (>= 1.7), rmarkdown, rstudioapi (>= 0.5)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-13 10:56:15 UTC; Dean
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Repository: CRAN
Date/Publication: 2016-08-13 13:56:09

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Fri, 12 Aug 2016

New package toxboot with initial version 0.1.0
Package: toxboot
Type: Package
Title: Bootstrap Methods for 'ToxCast' High Throughput Screening Data
Version: 0.1.0
Date: 2016-08-11
Authors@R: person(c("Eric", "D."), "Watt", email = "eric@ericdwatt.com", role = c("aut", "cre"))
URL: https://github.com/ericwatt/toxboot
BugReports: https://github.com/ericwatt/toxboot/issues
Description: Provides methods to use bootstrapping to quantify uncertainty in fitting 'ToxCast' concentration response data. Data is stored in memory, written to file, or stored in 'MySQL' or 'MongoDB' databases.
License: MIT + file LICENSE
LazyData: TRUE
Depends: R (>= 3.2)
Imports: data.table, rmongodb, tcpl (>= 1.0), DBI, RMySQL
Suggests: ggplot2, knitr, parallel, rmarkdown, testthat, magrittr, pander, covr
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-12 14:34:55 UTC; ericwatt
Author: Eric D. Watt [aut, cre]
Maintainer: Eric D. Watt <eric@ericdwatt.com>
Repository: CRAN
Date/Publication: 2016-08-12 16:54:44

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New package RSCABS with initial version 0.9.0
Package: RSCABS
Version: 0.9.0
Date: 2016-08-09
Title: Rao-Scott Cochran-Armitage by Slices Trend Test
Authors@R: c(person("Joe", "Swintek", role = c("aut", "cre"), email = "swintek.joe@epa.gov"), person("Kevin", "Flynn", role = "ctb", email = "Flynn.Kevin@epa.gov") )
Depends: R (>= 3.1.0)
SystemRequirements: Cairo (>= 1.0.0), ATK (>= 1.10.0), Pango (>= 1.10.0), GTK+ (>= 2.8.0), GLib (>= 2.8.0)
Imports: gWidgets, RGtk2, R2HTML, gWidgetsRGtk2, methods
LazyLoad: yes
LazyData: yes
Description: Performs the Rao-Scott Cochran-Armitage by Slices trend test (RSCABS) used in analysis of histopathological endpoints. It has functions for both command line operations along with a built in GUI.
License: CC0
URL: https://CRAN.R-project.org/package=RSCABS
Author: Joe Swintek [aut, cre], Kevin Flynn [ctb]
Maintainer: Joe Swintek <swintek.joe@epa.gov>
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-12 14:10:50 UTC; jswintek
Repository: CRAN
Date/Publication: 2016-08-12 16:50:59

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New package bundesligR with initial version 0.1.0
Package: bundesligR
Type: Package
Title: All Final Tables of the Bundesliga
Version: 0.1.0
Author: Philipp Ottolinger
Maintainer: Philipp Ottolinger <philipp@ottolinger.de>
Description: All final tables of Germany's highest football (soccer!) league, the Bundesliga. Contains data from 1964 to 2016.
License: GPL-3
URL: https://github.com/ottlngr/bundesligR
BugReports: https://github.com/ottlngr/bundesligR/issues
Depends: R (>= 2.10)
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-12 14:27:36 UTC; philipp
Repository: CRAN
Date/Publication: 2016-08-12 16:52:57

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New package binsmooth with initial version 0.1.0
Package: binsmooth
Type: Package
Title: Generate PDFs and CDFs from Binned Data
Version: 0.1.0
Author: David J. Hunter and McKalie Drown
Maintainer: Dave Hunter <dhunter@westmont.edu>
Description: Provides several methods for generating density functions based on binned data. Data are assumed to be nonnegative, but the bin widths need not be uniform, and the top bin may be unbounded. All PDF smoothing methods maintain the areas specified by the binned data. (Equivalently, all CDF smoothing methods interpolate the points specified by the binned data.) An estimate for the mean of the distribution may be supplied as an optional argument, which greatly improves the reliability of statistics computed from the smoothed density functions. Methods include step function, recursive subdivision, and optimized spline.
License: MIT + file LICENSE
Imports: stats, pracma, ineq, triangle
LazyData: TRUE
NeedsCompilation: no
Packaged: 2016-08-12 14:09:50 UTC; dhunter
Repository: CRAN
Date/Publication: 2016-08-12 16:46:49

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New package MultiGHQuad with initial version 1.2.0
Package: MultiGHQuad
Type: Package
Title: Multidimensional Gauss-Hermite Quadrature
Version: 1.2.0
Date: 2016-08-11
Authors@R: c(person("Karel", "Kroeze", email = "k.a.kroeze@utwente.nl", role = c("aut", "cre")), person("Rivka", "de Vries", email = "r.m.de.vries@umcg.nl", role = "ctb"), person("Alwin", "Stegeman", email = "a.w.stegeman@rug.nl", role = "ctb"))
Description: Uses a transformed, rotated and optionally adapted n-dimensional grid of quadrature points to calculate the numerical integral of n multivariate normal distributed parameters.
License: GPL-3
Depends: R (>= 3.2.0), mvtnorm, Matrix
Imports: fastGHQuad (>= 0.2)
Suggests: testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-11 18:37:21 UTC; karel
Author: Karel Kroeze [aut, cre], Rivka de Vries [ctb], Alwin Stegeman [ctb]
Maintainer: Karel Kroeze <k.a.kroeze@utwente.nl>
X-CRAN-Comment: Archived on 2016-05-02 as check problems were not corrected despite reminders.
Repository: CRAN
Date/Publication: 2016-08-12 12:47:56

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New package listless with initial version 0.0-2
Package: listless
Type: Package
Title: Convert Lists to Tidy Data Frames
Version: 0.0-2
Date: 2016-08-11
Authors@R: person("Richard", "Cotton", email = "richierocks@gmail.com", role = c("cre", "aut"))
Maintainer: Richard Cotton <richierocks@gmail.com>
Depends: R (>= 3.0.0)
Imports: magrittr (>= 1.5), tidyr (>= 0.5.1)
Description: A lightweight utility for converting lists to tidy data frames.
License: GPL-3
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-11 20:36:26 UTC; richie
Author: Richard Cotton [cre, aut]
Repository: CRAN
Date/Publication: 2016-08-12 12:39:49

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New package EMSaov with initial version 1.3
Package: EMSaov
Type: Package
Title: The Analysis of Variance with EMS
Description: The analysis of variance table including the expected mean squares (EMS) for various types of experimental design is provided. When some variables are random effects or we use special experimental design such as nested design, repeated-measures design, or split-plot design, it is not easy to find the appropriate test, especially denominator for F-statistic which depends on EMS.
Version: 1.3
Date: 2016-08-12
Author: Eun-Kyung Lee, Hye-Min Choi
Maintainer: Eun-Kyung Lee <lee.eunk@gmail.com>
License: GPL (>= 2)
Suggests: stats, graphics
Imports: shiny
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-08-12 00:51:39 UTC; EKLee
Repository: CRAN
Date/Publication: 2016-08-12 12:41:13

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New package CDF.PSIdekick with initial version 1.0
Package: CDF.PSIdekick
Type: Package
Title: Evaluate Differentially Private Algorithms for Publishing Cumulative Distribution Functions
Version: 1.0
Date: 2016-08-05
Author: Daniel Muise [aut,cre], Kobbi Nissim [aut], Georgios Kellaris [aut]
Maintainer: Daniel Muise <dmuise@stanford.edu>
Description: Designed by and for the community of differential privacy algorithm developers. It can be used to empirically evaluate and visualize Cumulative Distribution Functions incorporating noise that satisfies differential privacy, with numerous options made to streamline collection of utility measurements across variations of key parameters, such as epsilon, domain size, sample size, data shape, etc. Developed by researchers at Harvard PSI.
License: GPL (>= 2)
Imports: Rcpp (>= 0.12.6)
LinkingTo: Rcpp
RoxygenNote: 5.0.1.9000
NeedsCompilation: yes
Packaged: 2016-08-11 19:14:57 UTC; Dan
Repository: CRAN
Date/Publication: 2016-08-12 12:42:29

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