Tue, 09 Feb 2016

New package iemisc with initial version 0.5.0
Package: iemisc
Title: Irucka Embry's Miscellaneous Functions
Version: 0.5.0
Author: Irucka Embry [aut, cre]. Includes R source code and/or documentation previously published by: Felix Andrews (zoo) and Hans Werner Borchers (pracma). [Borrowed from DescTools description.]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Depends: R (>= 3.0.0), stats, data.table (>= 1.9.4)
Imports: zoo, pracma
Suggests: iemiscdata, Rcpp (>= 0.11.5), RcppOctave, rSymPy, NISTunits, import, financial, optiRum
Description: A collection of Irucka Embry's miscellaneous functions (Engineering Economics, Environmental/Water Resources Engineering, Geometry, Statistics, GNU Octave length functions, etc.).
URL: https://gitlab.com/iembry/iemisc
BugReports: https://gitlab.com/iembry/iemisc/issue
License: GPL (>= 3)
LazyData: true
Encoding: UTF-8
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-09 01:56:47 UTC; uoxyh
Repository: CRAN
Date/Publication: 2016-02-09 09:46:48

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New package FamEvent with initial version 1.0
Package: FamEvent
Type: Package
Title: Simulation of Time-to-Event Family Data and Penetrance Estimation
Version: 1.0
Date: 2016-02-08
Author: Yun-Hee Choi, Karen Kopciuk, Wenqing He, Laurent Briollais
Maintainer: Yun-Hee Choi <yun-hee.choi@schulich.uwo.ca>
Description: Generates time-to-event family data associated with mutated genes arising from various family study designs such as population-based, clinic- based, or multi-stage designs and provides functions to fit family data accounting for the study design and estimate age-dependent penetrance functions. It also provides carrier probabilities for those with missing genotypes and penetrance estimations are based on an Expectation-Maximization algorithm when genotypes are missing.
License: GPL (>= 2.0)
NeedsCompilation: no
Depends: R(>= 3.0.0), base, MASS, truncnorm, survival, kinship2
Repository: CRAN
Packaged: 2016-02-08 23:09:43 UTC; yunheechoi
Date/Publication: 2016-02-09 09:46:38

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Mon, 08 Feb 2016

New package stpm with initial version 1.0
Package: stpm
Type: Package
Title: Stochastic Model for Analysis of Longitudinal Data
Version: 1.0
Date: 2016-02-08
Author: I. Y. Zhbannikov, I. V. Akushevich, K. G. Arbeev, A. I. Yashin.
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Description: Utilities to estimate parameters of stochastic process and modeling survival trajectories and time-to-event outcomes observed from longitudinal studies. Miscellaneous function for data preparation is also provided. For more information, see: "Stochastic model for analysis of longitudinal data on aging and mortality" by Yashin A. et al, 2007, Mathematical Biosciences, 208(2), 538-551 <DOI:10.1016/j.mbs.2006.11.006>.
License: GPL
Imports: Rcpp (>= 0.11.1)
LinkingTo: Rcpp,RcppArmadillo
Depends: mice,sas7bdat,stats,nloptr,tools
Suggests: knitr (>= 1.11)
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-02-08 17:00:26 UTC; ilya
Repository: CRAN
Date/Publication: 2016-02-09 00:05:00

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New package LCMCR with initial version 0.4
Package: LCMCR
Type: Package
Title: Bayesian Nonparametric Latent-Class Capture-Recapture
Version: 0.4
Date: 2016-02-07
Author: Daniel Manrique-Vallier
Description: Bayesian population size estimation using non parametric latent-class models.
Maintainer: Daniel Manrique-Vallier <dmanriqu@indiana.edu>
License: GPL (>= 2)
Depends: R (>= 3.0.1)
Imports: methods
SystemRequirements: Gnu Scientific Library version >= 1.12
Packaged: 2016-02-08 16:37:06 UTC; d
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-02-08 23:57:11

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New package guess with initial version 0.1
Package: guess
Title: Adjust Estimates of Learning for Guessing
Version: 0.1
Authors@R: c(person("Gaurav", "Sood", email = "gsood07@gmail.com", role = c("aut", "cre")), person("Ken", "Cor", email = "mcor@ualberta.ca", role = c("aut")))
Maintainer: Gaurav Sood <gsood07@gmail.com>
Description: Adjust Estimates of Learning for Guessing. The package provides standard guessing correction, and a latent class model that leverages informative pre-post transitions. For details of the latent class model, see <http://gsood.com/research/papers/guess.pdf>.
URL: http://github.com/soodoku/guess
BugReports: http://github.com/soodoku/guess/issues
Depends: R (>= 3.2.1)
Imports: Rsolnp
License: MIT + file LICENSE
LazyData: true
VignetteBuilder: knitr
Suggests: knitr (>= 1.11), rmarkdown, testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-08 21:35:52 UTC; gaurav
Author: Gaurav Sood [aut, cre], Ken Cor [aut]
Repository: CRAN
Date/Publication: 2016-02-08 23:44:06

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New package permubiome with initial version 1.0
Package: permubiome
Type: Package
Title: A Permutation Based Test for Biomarker Discovery in Microbiome Data
Version: 1.0
Date: 2016-02-01
Author: Alfonso Benitez-Paez
Maintainer: Alfonso Benitez-Paez <abenitez@iata.csic.es>
Description: All the functions compiled in this package were created to perform permutation-based non-parametric analysis on microbiome data for biomarker discovery aims. This test executes thousands of comparisons in pairwise manner, after random shuffling of data into the different groups of study.
License: GPL-2
Imports: ggplot2
NeedsCompilation: no
Packaged: 2016-02-08 15:36:38 UTC; alfonso
Repository: CRAN
Date/Publication: 2016-02-08 17:32:13

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New package robotstxt with initial version 0.1.2
Package: robotstxt
Type: Package
Title: A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler' Permissions Checker
Version: 0.1.2
Authors@R: c(person("Peter", "Meissner", role = c("aut", "cre"), email = "retep.meissner@gmail.com"), person("Oliver", "Keys", role = "ctb"))
Description: Provides a 'Robotstxt' ('R6') class and accompanying methods to parse and check 'robots.txt' files. Data fields are provided as data frames and vectors. Permissions can be checked by providing path character vectors and optional bot names.
License: MIT + file LICENSE
LazyData: TRUE
BugReports: https://github.com/petermeissner/robotstxt/issues
URL: https://github.com/petermeissner/robotstxt
Imports: R6 (>= 2.1.1), stringr (>= 1.0.0), httr (>= 1.0.0)
Suggests: knitr, rmarkdown, dplyr, testthat
Depends: R (>= 3.0.0)
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-07 23:21:42 UTC; peter
Author: Peter Meissner [aut, cre], Oliver Keys [ctb]
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Repository: CRAN
Date/Publication: 2016-02-08 13:37:57

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New package fractional with initial version 0.1.1
Package: fractional
Type: Package
Title: Vulgar Fractions in R
Version: 0.1.1
Author: Bill Venables
Maintainer: Bill Venables <bill.venables@gmail.com>
Description: The main function of this package allows numerical vector objects to be displayed with their values in vulgar fractional form. This is convenient if patterns can then be more easily detected. In some cases replacing the components of a numeric vector by a rational approximation can also be expected to remove some component of round-off error. The main functions form a re-implementation of the functions 'fractions' and 'rational' of the MASS package, but using a radically improved programming strategy.
License: GPL (>= 2)
Suggests: stats, MASS, knitr, rmarkdown, ggplot2, dplyr
Imports: Rcpp
LazyData: TRUE
LinkingTo: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
VignetteBuilder: knitr
Packaged: 2016-02-08 13:27:27 UTC; bill
Repository: CRAN
Date/Publication: 2016-02-08 14:59:57

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Sun, 07 Feb 2016

New package funModeling with initial version 1.0
Package: funModeling
Type: Package
Title: Learning Data Cleaning, Visual Analysis and Model Performance
Description: Learn data cleaning, visual data analysis and model performance assessment (KS, AUC and ROC), package core is in the vignette documentation explaining last topics as a tutorial.
Version: 1.0
Date: 2016-01-25
Author: Pablo Casas
Maintainer: Pablo Casas <pabloc@datascienceheroes.com>
License: GPL-2
LazyData: true
Imports: ROCR, ggplot2, gridExtra, pander, plyr, reshape2, scales
Depends: R (>= 3.2.1), Hmisc (>= 3.17.1)
VignetteBuilder: knitr
Suggests: knitr
NeedsCompilation: no
Packaged: 2016-02-07 15:32:21 UTC; Usuario
Repository: CRAN
Date/Publication: 2016-02-07 18:03:59

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New package RLogicalOps with initial version 0.1
Package: RLogicalOps
Type: Package
Title: Process Logical Operations
Version: 0.1
Date: 2016-02-06
Author: Sunny Kumar <sunny.nitie14@gmail.com>
Maintainer: Sunny Kumar <sunny.nitie14@gmail.com>
Description: Processing logical operations such as AND/OR/NOT operations dynamically. It also handles nesting in the operations.
Imports: stringr, rstackdeque
License: GPL
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-07 10:16:08 UTC; sunny
Repository: CRAN
Date/Publication: 2016-02-07 12:39:19

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New package MixedDataImpute with initial version 0.1
Package: MixedDataImpute
Type: Package
Title: Missing Data Imputation for Continuous and Categorical Data using Nonparametric Bayesian Joint Models
Version: 0.1
Date: 2016-02-02
Author: Jared S. Murray
Maintainer: Jared S. Murray <jsmurray@stat.cmu.edu>
Description: Missing data imputation for continuous and categorical data, using nonparametric Bayesian joint models (specifically the hierarchically coupled mixture model with local dependence described in Murray and Reiter (2015); see 'citation("MixedDataImpute")' or http://arxiv.org/abs/1410.0438). See '?hcmm_impute' for example usage.
License: GPL-3
Imports: methods
Depends: gdata, Rcpp (>= 0.11), R (>= 3.1.0)
LinkingTo: Rcpp, RcppArmadillo, BH
RcppModules: HCMMLD
LazyData: true
NeedsCompilation: yes
Packaged: 2016-02-06 18:49:13 UTC; jared
Repository: CRAN
Date/Publication: 2016-02-07 09:20:13

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New package ETAS with initial version 0.2
Package: ETAS
Type: Package
Title: Modeling Earthquake Data Using ETAS Model
Version: 0.2
Date: 2016-02-04
Author: Abdollah Jalilian [aut, cre], Jiancang Zhuang [ctb]
Maintainer: Abdollah Jalilian <jalilian@razi.ac.ir>
Description: Fitting the space-time Epidemic Type Aftershock Sequence (ETAS) model to earthquake catalogs using a stochastic declustering approach. The ETAS model is a spatio-temporal marked point process model and a special case of the Hawcks process. The package is based on Fortran code by Jiancang Zhuang (available at http://bemlar.ism.ac.jp/zhuang/software.html), which is translated into C such that it can be called from R.
Depends: R (>= 3.1.0), maps
Imports: spatstat
License: GPL (>= 2)
LazyData: true
LazyLoad: true
NeedsCompilation: yes
Packaged: 2016-02-06 15:16:15 UTC; aj
Repository: CRAN
Date/Publication: 2016-02-07 09:35:44

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New package edfReader with initial version 1.0.0
Package: edfReader
Type: Package
Title: Reading EDF(+) and BDF(+) Files
Version: 1.0.0
Date: 2016-02-02
Authors@R: person ("Jan", "Vis", email = "jan@visconsultancy.eu", role = c("aut", "cre"))
Maintainer: Jan Vis <jan@visconsultancy.eu>
Description: Reads European Data Format files EDF and EDF+, see http://www.edfplus.info, BioSemi Data Format files BDF, see http://www.biosemi.com/faq/file_format.htm, and BDF+ files, see http://www.teuniz.net/edfbrowser/bdfplus%20format%20description.html. The files are read in two steps: first the header is read and then the signals (using the header object as a parameter).
License: GPL-3
LazyData: TRUE
Imports:
RoxygenNote: 5.0.1
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-02-07 07:46:26 UTC; Jan
Author: Jan Vis [aut, cre]
Repository: CRAN
Date/Publication: 2016-02-07 09:13:07

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Sat, 06 Feb 2016

New package RndTexExams with initial version 1.0
Package: RndTexExams
Title: Build Random Multiple Choice Exams
Version: 1.0
Authors@R: person("Marcelo", "Perlin", email = "marceloperlin@gmail.com", role = c("aut", "cre"))
Description: Using as input a 'LaTeX' file with a multiple choice exam, this package will produce random versions of the same exam.
Depends: R (>= 3.2.3)
Imports: tools, stringr, stringi, data.table
License: GPL-2
LazyData: true
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-02-06 15:14:08 UTC; Marcelo
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Repository: CRAN
Date/Publication: 2016-02-06 16:30:18

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New package mpbart with initial version 0.1
Package: mpbart
Title: Multinomial Probit Bayesian Additive Regression Trees
Version: 0.1
Authors@R: person("Bereket", "Kindo", email = "bpkindo@gmail.com", role = c("aut", "cre"))
Description: Fits Multinomial Probit Bayesian Additive Regression Trees.
Depends: R (>= 3.2.2), mlbench, bayesm, cvTools, mlogit
License: GPL (>= 2)
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-02-06 13:36:27 UTC; bereket
Author: Bereket Kindo [aut, cre]
Maintainer: Bereket Kindo <bpkindo@gmail.com>
Repository: CRAN
Date/Publication: 2016-02-06 15:35:18

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New package modes with initial version 0.6.1
Package: modes
Title: Find the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets
Version: 0.6.1
Date: 2016-02-05
Author: Sathish Deevi [aut, cre], 4D Strategies [aut,own]
Maintainer: Sathish Deevi <SathishCDeevi@gmail.com>
Copyright: 4D Strategies
Description: Designed with a dual purpose of accurately estimating the mode (or modes) as well as characterizing the modality of data. The specific application area includes complex or mixture distributions particularly in a big data environment. The heterogeneous nature of (big) data may require deep introspective statistical and machine learning techniques, but these statistical tools often fail when applied without first understanding the data. In small datasets, this often isn't a big issue, but when dealing with large scale data analysis or big data thoroughly inspecting each dimension typically yields an O(n^n-1) problem. As such, dealing with big data require an alternative toolkit. This package not only identifies the mode or modes for various data types, it also provides a programmatic way of understanding the modality (i.e. unimodal, bimodal, etc.) of a dataset (whether it's big data or not). See <http://www.sdeevi.com/modes_package> for examples and discussion.
Depends: R (>= 3.2.2)
License: CC BY-NC-SA 4.0
Collate: 'Utility_functions.R' 'Nonparametric_functions.R' 'Parametric_functions.R'
URL: http://www.sdeevi.com/modes_package
NeedsCompilation: no
Packaged: 2016-02-06 00:15:40 UTC; Novus PC
Repository: CRAN
Date/Publication: 2016-02-06 11:07:55

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New package LOGIT with initial version 1.3
Package: LOGIT
Type: Package
Title: Functions, Data and Code for Binary and Binomial Data
Version: 1.3
Date: 2015-09-28
Author: Joseph M Hilbe <hilbe@asu.edu>, Rafael S. de Souza <rafael.2706@gmail.com>
Maintainer: Rafael S. de Souza <rafael.2706@gmail.com>
Description: Functions, data and code for Hilbe, J.M. 2015. Practical Guide to Logistic Regression, by Chapman and Hall/CRC.
Depends: R (>= 3.0)
License: GPL (>= 3)
Imports: caret, pROC, ggplot2, reshape, e1071, MASS
LazyData: TRUE
NeedsCompilation: no
Repository: CRAN
Packaged: 2016-02-06 10:03:06 UTC; rafael
Date/Publication: 2016-02-06 11:20:21

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New package ggspectra with initial version 0.1.6
Package: ggspectra
Type: Package
Title: Extensions to 'ggplot2' for Radiation Spectra
Version: 0.1.6
Date: 2016-02-05
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Description: Additional annotations, stats and scales for plotting "light" spectra with 'ggplot2', together with specializations of ggplot() and plot() methods for spectral data stored in objects of the classes defined in package 'photobiology' and a plot() method for objects of class "waveband", also defined in package 'photobiology'.
License: GPL (>= 3)
LazyData: TRUE
LazyLoad: TRUE
ByteCompile: TRUE
Depends: R (>= 3.2.0)
Imports: photobiology (>= 0.9.5), photobiologyWavebands (>= 0.3.5), ggplot2 (>= 2.0.0), scales (>= 0.3.0), dplyr (>= 0.4.3), lubridate (>= 1.5.0), tidyr (>= 0.4.0)
Suggests: knitr, rmarkdown
URL: http://www.r4photobiology.info, https://bitbucket.org/aphalo/ggspectra
BugReports: https://bitbucket.org/aphalo/ggspectra
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-02-05 15:56:46 UTC; aphalo
Repository: CRAN
Date/Publication: 2016-02-06 11:07:52

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Fri, 05 Feb 2016

New package stdReg with initial version 1.0
Package: stdReg
Type: Package
Title: Regression Standardization
Version: 1.0
Date: 2016-02-01
Author: Arvid Sjolander
Maintainer: Arvid Sjolander <arvid.sjolander@ki.se>
Description: Contains functionality for regression standardization. Two general classes of models are allowed; generalized linear models and Cox proportional hazards models.
License: LGPL (>= 3)
Imports: graphics, stats, survival, data.table
NeedsCompilation: no
Packaged: 2016-02-05 07:28:22 UTC; arvsjo
Repository: CRAN
Date/Publication: 2016-02-05 19:25:11

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New package SixSigma with initial version 0.9-2
Package: SixSigma
Type: Package
Title: Six Sigma Tools for Quality Control and Improvement
Version: 0.9-2
Date: 2016-02-05
Encoding: UTF-8
Author: Emilio L. Cano, Javier M. Moguerza, Mariano Prieto and Andrés Redchuk
Maintainer: Emilio L. Cano <emilio.lopez@urjc.es>
Description: Functions and utilities to perform Statistical Analyses in the Six Sigma way. Through the DMAIC cycle (Define, Measure, Analyze, Improve, Control), you can manage several Quality Management studies: Gage R&R, Capability Analysis, Control Charts, Loss Function Analysis, etc. Data frames used in the books "Six Sigma with R" (Springer, 2012) and "Quality Control with R" (Springer, 2015) are also included in the package.
URL: http://www.sixsigmawithr.com
License: GPL (>= 2)
Depends: R (>= 2.14.0)
Imports: grDevices, stats, graphics, qcc, lattice, ggplot2, reshape2, nortest, e1071, scales, testthat, xtable
LazyLoad: yes
LazyData: yes
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-05 13:05:50 UTC; emilio
Repository: CRAN
Date/Publication: 2016-02-05 19:33:22

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New package cmna with initial version 0.1.2
Package: cmna
Type: Package
Title: Computational Methods for Numerical Analysis
Version: 0.1.2
Date: 2016-02-04
Author: "James P. Howard, II" <jh@jameshoward.us>
Maintainer: "James P. Howard, II" <jh@jameshoward.us>
Description: Provides the source and examples for James P. Howard, II, "Computational Methods for Numerical Analysis with R," <https://jameshoward.us/cmna>, a forthcoming book on numerical methods in R.
License: BSD_2_clause + file LICENSE
LazyLoad: no
Suggests: testthat
RoxygenNote: 5.0.1
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2016-02-05 01:09:51 UTC; howardjp
Repository: CRAN
Date/Publication: 2016-02-05 19:17:44

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New package gmeta with initial version 2.2-4
Package: gmeta
Type: Package
Version: 2.2-4
Date: 2015-6-16
Title: Meta-Analysis via a Unified Framework of Confidence Distribution
Author: Guang Yang <gyang.rutgers@gmail.com> and Minge Xie <mxie@stat.rutgers.edu>
Maintainer: Guang Yang <gyang.rutgers@gmail.com>
Depends: stats, BiasedUrn, binom
Description: An implementation of an all-in-one function for a wide range of meta-analysis problems. It contains a single function gmeta() that unifies all standard meta-analysis methods and also several newly developed ones under a framework of combining confidence distributions (CDs). Specifically, the package can perform classical p-value combination methods (such as methods of Fisher, Stouffer, Tippett, etc.), fit meta-analysis fixed-effect and random-effects models, and synthesizes 2x2 tables. Furthermore, it can perform robust meta-analysis, which provides protection against model-misspecifications, and limits the impact of any unknown outlying studies. In addition, the package implements two exact meta-analysis methods from synthesizing 2x2 tables with rare events (e.g., zero total event). A plot function to visualize individual and combined CDs through extended forest plots is also available.
License: GPL (>= 2)
Repository: CRAN
NeedsCompilation: yes
Packaged: 2016-01-30 05:10:26 UTC; gyang
Date/Publication: 2016-02-05 19:08:59

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New package exifr with initial version 0.1.1
Package: exifr
Type: Package
Title: EXIF Image Data in R
Version: 0.1.1
Date: 2016-02-04
Authors@R: c(person("Dewey", "Dunnington", role = c("aut", "cre"), email = "dewey@fishandwhistle.net"), person("Phil", "Harvey", role = "aut"))
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Description: Reads EXIF data using ExifTool <http://www.sno.phy.queensu.ca/~phil/exiftool/> and returns results as a data frame. ExifTool is a platform-independent Perl library plus a command-line application for reading, writing and editing meta information in a wide variety of files. ExifTool supports many different metadata formats including EXIF, GPS, IPTC, XMP, JFIF, GeoTIFF, ICC Profile, Photoshop IRB, FlashPix, AFCP and ID3, as well as the maker notes of many digital cameras by Canon, Casio, FLIR, FujiFilm, GE, HP, JVC/Victor, Kodak, Leaf, Minolta/Konica-Minolta, Motorola, Nikon, Nintendo, Olympus/Epson, Panasonic/Leica, Pentax/Asahi, Phase One, Reconyx, Ricoh, Samsung, Sanyo, Sigma/Foveon and Sony.
License: GPL-2
LazyData: TRUE
Imports: foreach, plyr, utils
SystemRequirements: Perl
URL: https://github.com/paleolimbot/exifr
BugReports: https://github.com/paleolimbot/exifr/issues
NeedsCompilation: no
Packaged: 2016-02-04 18:24:52 UTC; dewey
Author: Dewey Dunnington [aut, cre], Phil Harvey [aut]
Repository: CRAN
Date/Publication: 2016-02-05 19:10:05

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Thu, 04 Feb 2016

New package WHO with initial version 0.1
Package: WHO
Type: Package
Title: R Client for the World Health Organization API
Version: 0.1
Date: 2016-02-03
Authors@R: person("Eric", "Persson", email = "expersso5@gmail.com", role = c("aut", "cre"))
Description: Provides programmatic access to the World Health Organization API.
License: CC0
URL: https://www.github.com/expersso/WHO , http://www.who.int
BugReports: https://www.github.com/expersso/WHO/issues
Imports: httr, dplyr
VignetteBuilder: knitr
Suggests: ggplot2, knitr, testthat, rmarkdown
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-04 20:13:59 UTC; quad
Author: Eric Persson [aut, cre]
Maintainer: Eric Persson <expersso5@gmail.com>
Repository: CRAN
Date/Publication: 2016-02-05 00:27:48

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New package DRaWR with initial version 1.0.1
Package: DRaWR
Title: Discriminative Random Walk with Restart
Version: 1.0.1
Authors@R: person("Charles", "Blatti", email = "blatti@illinois.edu", role = c("aut", "cre"))
Author: Charles Blatti [aut, cre]
Maintainer: Charles Blatti <blatti@illinois.edu>
Description: We present DRaWR, a network-based method for ranking genes or properties related to a given gene set. Such related genes or properties are identified from among the nodes of a large, heterogeneous network of biological information. Our method involves a random walk with restarts, performed on an initial network with multiple node and edge types, preserving more of the original, specific property information than current methods that operate on homogeneous networks. In this first stage of our algorithm, we find the properties that are the most relevant to the given gene set and extract a subnetwork of the original network, comprising only the relevant properties. We then rerank genes by their similarity to the given gene set, based on a second random walk with restarts, performed on the above subnetwork.
Depends: R (>= 3.0)
License: GPL-2
LazyData: true
Imports: Matrix, ROCR
RoxygenNote: 5.0.1.9000
NeedsCompilation: no
Packaged: 2016-02-04 15:59:44 UTC; root
Repository: CRAN
Date/Publication: 2016-02-05 00:55:30

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New package elexr with initial version 1.0
Package: elexr
Type: Package
Title: Load Associated Press Election Results with Elex
Version: 1.0
Date: 2016-02-02
Author: Geoff Hing
Maintainer: Geoff Hing <geoffhing@gmail.com>
Description: Provides R access to election results data. Wraps elex (https://github.com/newsdev/elex/), a Python package and command line tool for fetching and parsing Associated Press election results.
License: MIT + file LICENSE
Imports: utils
SystemRequirements: Python (>= 2.7 or >= 3.5) and elex package
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-04 12:19:20 UTC; ghing
Repository: CRAN
Date/Publication: 2016-02-04 15:11:37

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New package Sky with initial version 1.0
Package: Sky
Type: Package
Title: Canopy Openness Analyzer Package
Version: 1.0
Date: 2016-02-01
Author: Benedicte Bachelot
Maintainer: Benedicte Bachelot <bmb43@duke.edu>
Description: Provides an alternative to manually process hemispherical pictures. The algorithm processes each picture one by one to determine the proportion of sky pixel. The algorithm uses the Ridler and Calvard method (Ridler and Calvard 1978).
Depends: R (>= 2.10),EBImage
License: GPL (>= 2)
Packaged: 2016-02-03 22:42:12 UTC; benedicte
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-02-04 11:27:45

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New package remoter with initial version 0.2-0
Package: remoter
Type: Package
Title: Remote R: Control a Remote R Session from a Local One
Version: 0.2-0
Description: A set of utilities for controlling a remote R session from a local one. Simply set up a server (see package vignette for more details) and connect to it from your local R session, including 'RStudio'. Network communication is handled by the 'ZeroMQ' library by way of the 'pbdZMQ' package. The client/server framework is a custom 'REPL'.
License: BSD 2-clause License + file LICENSE
Depends: R (>= 3.2.0), pbdZMQ (>= 0.2-1)
Imports: stats, utils, assertthat (>= 0.1), sodium (>= 0.2)
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
ByteCompile: yes
Authors@R: c(person("Drew", "Schmidt", role=c("aut", "cre"), email="wrathematics@gmail.com"), person("Wei-Chen", "Chen", role="aut"))
URL: https://github.com/wrathematics/remoter
BugReports: https://github.com/wrathematics/remoter/issues
Maintainer: Drew Schmidt <wrathematics@gmail.com>
RoxygenNote: 5.0.1
Packaged: 2016-02-04 03:15:03 UTC; mschmid3
Author: Drew Schmidt [aut, cre], Wei-Chen Chen [aut]
Repository: CRAN
Date/Publication: 2016-02-04 11:36:52

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New package Qtools with initial version 1.0
Package: Qtools
Type: Package
Title: Utilities for Quantiles
Version: 1.0
Date: 2016-02-02
Author: Marco Geraci
Maintainer: Marco Geraci <geraci@mailbox.sc.edu>
Depends: R (>= 3.0.0)
Imports: utils, grDevices, graphics, stats, MASS, quantreg, mice, boot
Suggests: survey, R.rsp
VignetteBuilder: R.rsp
Description: This is a collection of functions for unconditional and conditional quantiles.
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: yes
Packaged: 2016-02-03 22:27:10 UTC; geraci
Repository: CRAN
Date/Publication: 2016-02-04 11:27:42

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New package PortfolioEffectEstim with initial version 1.2
Package: PortfolioEffectEstim
Type: Package
Title: High Frequency Price Estimators by PortfolioEffect
Version: 1.2
Date: 2016-02-01
Depends: methods,PortfolioEffectHFT(>= 1.5)
Imports: rJava
LazyData: yes
ByteCompile: TRUE
Authors@R: c(person("Andrey", "Kostin", role = c("aut", "cre"), email = "andrey.kostin@portfolioeffect.com"), person("Aleksey", "Zemnitskiy", role = c("aut")), person("Oleg", "Nechaev", role = c("aut")) )
Maintainer: Andrey Kostin <andrey.kostin@portfolioeffect.com>
Description: R interface to PortfolioEffect cloud service for estimating high frequency price variance, quarticity, microstructure noise variance, and other metrics in both aggregate and rolling window flavors. Constructed estimators could use client-side market data or access HF intraday price history for all major US Equities. See https://www.portfolioeffect.com/ for more information on the PortfolioEffect high frequency portfolio analytics platform.
URL: https://www.portfolioeffect.com/
License: GPL-3
SystemRequirements: Java (>= 1.7)
NeedsCompilation: no
Repository: CRAN
Packaged: 2016-02-02 12:50:36 UTC; Andrey
Author: Andrey Kostin [aut, cre], Aleksey Zemnitskiy [aut], Oleg Nechaev [aut]
Date/Publication: 2016-02-04 11:27:40

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New package PACVB with initial version 1.1
Package: PACVB
Type: Package
Title: Variational Bayes Approximation of Gibbs Posteriors with Hinge Losses
Version: 1.1
Date: 2016-01-29
Author: James Ridgway
Maintainer: James Ridgway <james.ridgway@bristol.ac.uk>
Description: VB approximations of Gibbs measures with hinge losses for classification and ranking.
License: GPL (>= 2)
Depends: Rcpp, MASS
LinkingTo: Rcpp, RcppArmadillo, BH
RcppModules: GDHingeCxx, GDHingeAUCCxx
Packaged: 2016-02-03 23:08:52 UTC; james
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-02-04 11:27:34

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New package iemiscdata with initial version 0.5.0
Package: iemiscdata
Title: Irucka Embry's Miscellaneous Data Collection
Version: 0.5.0
Author: Irucka Embry [aut, cre]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Depends: R (>= 2.14.0)
Suggests: rivr
Description: Miscellaneous data sets (Environmental/Water Resources Engineering).
URL: https://gitlab.com/iembry/iemiscdata
BugReports: https://gitlab.com/iembry/iemiscdata/issues
License: GPL (>= 3)
LazyData: true
Encoding: UTF-8
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-04 02:30:57 UTC; uoxyh
Repository: CRAN
Date/Publication: 2016-02-04 11:36:49

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New package gcerisk with initial version 16.1.1
Package: gcerisk
Type: Package
Title: Generalized Competing Event Model
Version: 16.1.1
Date: 2016-01-15
Author: Hanjie Shen <has072@ucsd.edu>, Ruben Carmona <ruben.carmona13@gmail.com>, Loren Mell <lmell@ucsd.edu>
Maintainer: Hanjie Shen <shenhanjie0418@gmail.com>
Depends: survival, cmprsk, ggplot2,
Imports: stats
Description: Generalized competing event model based on Cox PH model and Fine-Gray model. This function is designed to develop optimized risk-stratification methods for competing risks data, such as described in: 1. Carmona R, Gulaya S, Murphy JD, Rose BS, Wu J, Noticewala S,McHale MT, Yashar CM, Vaida F, and Mell LK.(2014) Validated competing event model for thestage I-II endometrial cancer population. Int J Radiat Oncol Biol Phys.89:888-98. <DOI:10.1016/j.ijrobp.2014.03.047>. 2. Carmona R, Zakeri K, Green G, Hwang L, Gulaya S, Xu B, Verma R, Williamson CW, Triplett DP, Rose BS, Shen H, Vaida F, Murphy JD, and Mell LK. (2016) Improved method to stratify elderly cancer patients at risk for competing events. J Clin Oncol.in press. <DOI:10.1200/JCO.2015.65.0739>.
License: GPL (>= 2)
LazyData: TRUE
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-04 00:18:41 UTC; has072
Repository: CRAN
Date/Publication: 2016-02-04 11:36:48

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New package DiagrammeRsvg with initial version 0.1
Package: DiagrammeRsvg
Type: Package
Title: Export DiagrammeR Graphviz Graphs as SVG
Version: 0.1
Date: 2016-02-02
Authors@R: person( "Richard", "Iannone" , role = c("aut", "cre") , email = "riannone@me.com" )
Maintainer: Richard Iannone <riannone@me.com>
Description: Allows for export of DiagrammeR Graphviz objects to SVG.
License: MIT + file LICENSE
Imports: V8 (>= 0.10)
URL: https://github.com/rich-iannone/DiagrammeRsvg
BugReports: https://github.com/rich-iannone/DiagrammeRsvg/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-03 22:57:22 UTC; riannone
Author: Richard Iannone [aut, cre]
Repository: CRAN
Date/Publication: 2016-02-04 11:27:31

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New package ABCp2 with initial version 1.2
Package: ABCp2
Type: Package
Title: Approximate Bayesian Computational Model for Estimating P2
Version: 1.2
Date: 2016-02-01
Author: M. Catherine Duryea, Andrew D. Kern, Robert M. Cox, and Ryan Calsbeek
Maintainer: M. Catherine Duryea <katie.duryea@gmail.com>
Description: Tests the goodness of fit of a distribution of offspring to the Normal, Poisson, and Gamma distribution and estimates the proportional paternity of the second male (P2) based on the best fit distribution.
Depends: MASS
License: GPL-2
Packaged: 2016-02-04 09:12:00 UTC; mcduryea
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-02-04 11:27:26

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Wed, 03 Feb 2016

New package tensr with initial version 1.0.0
Package: tensr
Type: Package
Title: Covariance Inference and Decompositions for Tensor Datasets
Version: 1.0.0
Date: 2016-01-25
Authors@R: c(person("David", "Gerard", email = "dcgerard@uchicago.edu", role = c("aut", "cre")), person("Peter", "Hoff", email = "pdhoff@uw.edu", role = "aut"))
Description: A collection of functions for Kronecker structured covariance estimation and testing under the array normal model. For estimation, maximum likelihood and Bayesian equivariant estimation procedures are implemented. For testing, a likelihood ratio testing procedure is available. This package also contains additional functions for manipulating and decomposing tensor data sets. This work was partially supported by NSF grant DMS-1505136.
License: GPL-3
LazyData: TRUE
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Imports: stats
NeedsCompilation: no
Packaged: 2016-02-03 16:02:08 UTC; david
Author: David Gerard [aut, cre], Peter Hoff [aut]
Maintainer: David Gerard <dcgerard@uchicago.edu>
Repository: CRAN
Date/Publication: 2016-02-03 22:04:38

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New package photobiologyWavebands with initial version 0.4.0
Package: photobiologyWavebands
Type: Package
Title: Waveband Definitions for UV, VIS, and IR Radiation
Version: 0.4.0
Date: 2016-02-02
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Description: Constructors of waveband objects for commonly used biological spectral weighting functions (BSWFs) and for different wavebands describing named ranges of wavelengths in the ultraviolet (UV), visible (VIS) and infrared (IR) regions of the electromagnetic spectrum.
License: GPL (>= 3)
VignetteBuilder: knitr
Depends: R (>= 3.2.0), photobiology (>= 0.9.4)
Suggests: knitr (>= 1.12.3)
LazyLoad: yes
LazyData: yes
ByteCompile: true
Encoding: UTF-8
URL: http://www.r4photobiology.info/, https://bitbucket.org/aphalo/photobiologywavebands
BugReports: https://bitbucket.org/aphalo/photobiologywavebands/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-02 14:13:28 UTC; aphalo
Repository: CRAN
Date/Publication: 2016-02-03 22:57:52

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New package RLumModel with initial version 0.1.0
Package: RLumModel
Type: Package
Title: Modelling Ordinary Differential Equations Leading to Luminescence
Version: 0.1.0
Date: 2016-02-02
Author: Johannes Friedrich [aut, trl, cre], Sebastian Kreutzer [aut, ths], Christoph Schmidt [aut, ths]
Authors@R: c( person("Johannes", "Friedrich", role = c("aut","trl","cre"), email = "johannes.friedrich@uni-bayreuth.de"), person("Sebastian", "Kreutzer", role = c("aut", "ths")), person("Christoph", "Schmidt", role = c("aut", "ths")) )
Maintainer: Johannes Friedrich <johannes.friedrich@uni-bayreuth.de>
Description: A collection of function to simulate luminescence signals in the mineral quartz based on published models.
Contact: Package Developer Team <developer@model.r-luminescence.de>
License: GPL-3
Depends: R (>= 3.2.3), utils, Luminescence (>= 0.5.1)
Imports: deSolve (>= 1.12), methods
Collate: RLumModel-package.R calc_signal.R calc_concentrations.R create_DRT.sequence.R create_SAR.sequence.R model_LuminescenceSignals.R read_SEQ2R.R set_ODE.R set_ODE_LM_OSL.R set_pars.R simulate_CW_OSL.R simulate_LM_OSL.R simulate_RF.R simulate_TL.R simulate_heating.R simulate_illumination.R simulate_irradiation.R simulate_pause.R translate_sequence.R
RoxygenNote: 5.0.1
Suggests: testthat
NeedsCompilation: no
Packaged: 2016-02-03 08:24:57 UTC; Johannes
Repository: CRAN
Date/Publication: 2016-02-03 12:26:14

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Tue, 02 Feb 2016

New package MeanShift with initial version 1.0-1
Package: MeanShift
Type: Package
Title: Clustering via the Mean Shift Algorithm
Version: 1.0-1
Date: 2016-01-28
Author: Mattia Ciollaro and Daren Wang
Maintainer: Mattia Ciollaro <mattiaciollaro@gmail.com>
Depends: parallel
Description: Clustering using the mean shift algorithm (multi-core processing is supported) or its blurring version. See <https://normaldeviate.wordpress.com/2012/07/20/the-amazing-mean-shift-algorithm/> for more information.
License: GPL-3
NeedsCompilation: no
Packaged: 2016-02-02 18:03:10 UTC; mattiaciollaro
Repository: CRAN
Date/Publication: 2016-02-03 01:03:22

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New package patPRO with initial version 1.1.0
Package: patPRO
Type: Package
Title: Visualizing Temporal Microbiome Data
Version: 1.1.0
Date: 2016-02-01
Author: Hannigan GD, Loesche MA, Hodkinson BP, Mehta S, Grice EA
Maintainer: Geoffrey D Hannigan <ghanni@upenn.edu>
Imports: reshape2, ggplot2, grid, gridExtra, plyr, RColorBrewer
Description: Quickly and easily visualize longitudinal microbiome profiles using standard output from the QIIME microbiome analysis toolkit (see <http://qiime.org> for more information).
License: GPL-3
LazyLoad: yes
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-02-02 17:25:52

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New package hdm with initial version 0.1.0
Package: hdm
Type: Package
Title: High-Dimensional Metrics
Version: 0.1.0
Date: 2016-01-31
Authors@R: c(person("Martin", "Spindler", email="spindler@mea.mpisoc.mpg.de", role=c("cre", "aut")), person("Victor", "Chernozhukov", role="aut"), person("Christian", "Hansen", role="aut"))
Depends: R (>= 3.0.0)
Description: Implementation of selected high-dimensional statistical and econometric methods for estimation and inference. Efficient estimators and uniformly valid confidence intervals for various low-dimensional causal/structural parameters are provided which appear in high-dimensional approximately sparse models. Including functions for fitting heteroscedastic robust Lasso regressions with non-Gaussian errors and for instrumental variable (IV) and treatment effect estimation in a high-dimensional setting. Moreover, the methods enable valid post-selection inference and rely on a theoretically grounded, data-driven choice of the penalty.
License: GPL-3
LazyData: TRUE
Imports: MASS, glmnet, ggplot2, checkmate
Suggests: testthat, knitr, xtable
VignetteBuilder: knitr
Author: Martin Spindler [cre, aut], Victor Chernozhukov [aut], Christian Hansen [aut]
Maintainer: Martin Spindler <spindler@mea.mpisoc.mpg.de>
Repository: CRAN
Repository/R-Forge/Project: hdm
Repository/R-Forge/Revision: 76
Repository/R-Forge/DateTimeStamp: 2016-02-01 21:18:10
Date/Publication: 2016-02-02 11:52:02
NeedsCompilation: no
Packaged: 2016-02-01 21:30:47 UTC; rforge

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New package GGMridge with initial version 1.1
Package: GGMridge
Type: Package
Title: Gaussian Graphical Models Using Ridge Penalty Followed by Thresholding and Reestimation
Version: 1.1
Date: 2016-02-01
Author: Min Jin Ha [aut, cre], Shannon Holloway [ctb]
Maintainer: Shannon Holloway <sthollow@ncsu.edu>
Depends: mvtnorm, MASS, stats, graphics, methods
Description: Estimation of partial correlation matrix using ridge penalty followed by thresholding and reestimation. Under multivariate Gaussian assumption, the matrix constitutes an Gaussian graphical model (GGM).
License: GPL-2
LazyLoad: yes
NeedsCompilation: no
Packaged: 2016-02-01 21:18:21 UTC; sthollow
Repository: CRAN
Date/Publication: 2016-02-02 11:48:43

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New package geneSLOPE with initial version 0.36.6
Package: geneSLOPE
Type: Package
Title: Genome-Wide Association Study with SLOPE
Version: 0.36.6
Date: 2016-02-02
Authors@R: c(person("Damian", "Brzyski", role = "aut"), person("Christine", "Peterson", role = "aut"), person("Malgorzata", "Bogdan", role = "aut"), person("Chiara", "Sabatti", role = "aut"), person("Piotr", "Sobczyk", email = "piotr.sobczyk@pwr.edu.pl", role = c("cre", "aut")))
Description: Genome-wide association study (GWAS) performed with SLOPE, short for Sorted L-One Penalized Estimation, a method for estimating the vector of coefficients in linear model. In the first step of GWAS, SNPs are clumped according to their correlations and distances. Then, SLOPE is performed on data where each clump has one representative.
License: GPL-3
URL: https://github.com/psobczyk/geneSLOPE
BugReports: https://github.com/psobczyk/geneSLOPE/issues
LazyData: TRUE
Depends: R (>= 3.1.3), SLOPE
Imports: ggplot2, bigmemory, grid, utils, stats
Suggests: shiny, knitr, rmarkdown, testthat
VignetteBuilder: knitr
Repository: CRAN
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-02-02 09:36:29 UTC; sobczyk
Author: Damian Brzyski [aut], Christine Peterson [aut], Malgorzata Bogdan [aut], Chiara Sabatti [aut], Piotr Sobczyk [cre, aut]
Maintainer: Piotr Sobczyk <piotr.sobczyk@pwr.edu.pl>
Date/Publication: 2016-02-02 12:34:31

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New package DDRTree with initial version 0.1.3
Package: DDRTree
Type: Package
Title: Learning Principal Graphs with DDRTree
Version: 0.1.3
Date: 2016-1-17
Author: Xiaojie Qiu, Cole Trapnell, Qi Mao, Li Wang
Depends: irlba
Imports: Rcpp
LinkingTo: Rcpp, RcppEigen, BH
Maintainer: Xiaojie Qiu <xqiu@uw.edu>
Description: Project data into a reduced dimensional space and construct a principal graph from the reduced dimension.
License: Artistic License 2.0
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-02-01 21:28:51 UTC; xqiu
Repository: CRAN
Date/Publication: 2016-02-02 11:47:53

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Mon, 01 Feb 2016

New package PortfolioEffectHFT with initial version 1.5
Package: PortfolioEffectHFT
Type: Package
Title: High Frequency Portfolio Analytics by PortfolioEffect
Version: 1.5
Date: 2016-01-31
URL: https://www.portfolioeffect.com/
Depends: R (>= 2.13.2), ggplot2 (>= 2.0.0)
Imports: methods, rJava, grid
SystemRequirements: Java (>= 1.7)
LazyData: yes
ByteCompile: TRUE
Authors@R: c(person("Aleksey", "Zemnitskiy", role = c("aut", "cre"), email = "aleksey.zemnitskiy@portfolioeffect.com"), person("Andrey", "Kostin", role = c("aut")), person("Oleg", "Nechaev", role = c("aut")), person("Craig Otis and others", role = c("ctb", "cph"), comment = "OpenFAST library"), person("Daniel Lemire, Muraoka Taro and others", role = c("ctb", "cph"), comment = "JavaFastPFOR library"), person("Joe Walnes, Jorg Schaible and others", role = c("ctb", "cph"), comment = "XStream library"), person("Dain Sundstrom", role = c("ctb", "cph"), comment = "Snappy library"), person("Extreme! Lab, Indiana University", role = c("ctb", "cph"), comment = "XPP3 library"), person("The Apache Software Foundation", role = c("ctb", "cph"), comment = "Apache Log4j and Commons Lang libraries"), person("Google, Inc.", role = c("ctb", "cph"), comment = "GSON library"), person("Free Software Foundation", role = c("ctb", "cph"), comment = "GNU Trove and GNU Crypto libraries") )
Maintainer: Aleksey Zemnitskiy <aleksey.zemnitskiy@portfolioeffect.com>
Description: R interface to PortfolioEffect cloud service for backtesting high frequency trading (HFT) strategies, intraday portfolio analysis and optimization. Includes auto-calibrating model pipeline for market microstructure noise, risk factors, price jumps/outliers, tail risk (high-order moments) and price fractality (long memory). Constructed portfolios could use client-side market data or access HF intraday price history for all major US Equities. See https://www.portfolioeffect.com/ for more information on the PortfolioEffect high frequency portfolio analytics platform.
License: GPL-3
Copyright: See file COPYRIGHTS
NeedsCompilation: no
Repository: CRAN
Packaged: 2016-02-01 18:14:54 UTC; alex
Author: Aleksey Zemnitskiy [aut, cre], Andrey Kostin [aut], Oleg Nechaev [aut], Craig Otis and others [ctb, cph] (OpenFAST library), Daniel Lemire, Muraoka Taro and others [ctb, cph] (JavaFastPFOR library), Joe Walnes, Jorg Schaible and others [ctb, cph] (XStream library), Dain Sundstrom [ctb, cph] (Snappy library), Extreme! Lab, Indiana University [ctb, cph] (XPP3 library), The Apache Software Foundation [ctb, cph] (Apache Log4j and Commons Lang libraries), Google, Inc. [ctb, cph] (GSON library), Free Software Foundation [ctb, cph] (GNU Trove and GNU Crypto libraries)
Date/Publication: 2016-02-01 22:02:42

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New package exreport with initial version 0.4.1
Package: exreport
Title: Fast, Reliable and Elegant Reproducible Research
Version: 0.4.1
Authors@R: c(person("Jacinto", "Arias", , "jacinto.arias@uclm.es", role = c("aut", "cre")), person("Javier", "Cozar", , "javier.cozar@uclm.es", role = c("aut")))
Description: Analysis of experimental results and automatic report generation in both interactive HTML and LaTeX. This package ships with a rich interface for data modeling and built in functions for the rapid application of statistical tests and generation of common plots and tables with publish-ready quality.
Depends: R (>= 3.1.1)
Imports: ggplot2, grDevices, methods, reshape2, stats, tools, utils
License: GPL-2
LazyData: true
NeedsCompilation: no
Packaged: 2016-01-13 10:14:17 UTC; jcozar
Author: Jacinto Arias [aut, cre], Javier Cozar [aut]
Maintainer: Jacinto Arias <jacinto.arias@uclm.es>
Repository: CRAN
Date/Publication: 2016-02-01 22:01:15

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New package photobiology with initial version 0.9.4
Package: photobiology
Type: Package
Title: Photobiological Calculations
Version: 0.9.4
Date: 2016-02-01
Author: Pedro J. Aphalo
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Description: Definitions of classes, methods, operators and functions for use in photobiology and radiation meteorology and climatology. Calculation of effective (weighted) and not-weighted irradiances/doses, fluence rates, transmittance, reflectance, absorptance, absorbance and diverse ratios and other derived quantities from spectral data. Local maxima and minima. Conversion between energy- and photon-based units. Wavelength interpolation. Astronomical calculations related solar angles and day length. Colours and vision.
License: GPL (>= 3)
VignetteBuilder: knitr
Depends: R (>= 3.2.0)
Imports: Rcpp (>= 0.12.2), lubridate (>= 1.5.0), plyr (>= 1.8.3), dplyr (>= 0.4.3), splus2R (>= 1.2-0), caTools (>= 1.17.1)
Suggests: knitr (>= 1.11), testthat (>= 0.11.0), roxygen2 (>= 5.0.1)
LazyLoad: yes
LazyData: yes
ByteCompile: true
NeedsCompilation: yes
LinkingTo: Rcpp
URL: http://www.r4photobiology.info/, https://bitbucket.org/aphalo/photobiology
BugReports: https://bitbucket.org/aphalo/photobiology/issues
Encoding: UTF-8
RoxygenNote: 5.0.1
Packaged: 2016-02-01 17:30:55 UTC; aphalo
Repository: CRAN
Date/Publication: 2016-02-01 21:11:41

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New package murphydiagram with initial version 0.11
Package: murphydiagram
Type: Package
Title: Murphy Diagrams for Forecast Comparisons
Version: 0.11
Date: 2016-02-01
Author: Alexander Jordan, Fabian Krueger
Maintainer: Fabian Krueger <Fabian.Krueger83@gmail.com>
Description: Data and code for the paper by Ehm, Gneiting, Jordan and Krueger ('Of Quantiles and Expectiles: Consistent Scoring Functions, Choquet Representations, and Forecast Rankings', 2015).
License: GPL-3
URL: https://sites.google.com/site/fk83research/code
NeedsCompilation: no
Packaged: 2016-02-01 12:36:54 UTC; kruegefn
Repository: CRAN
Date/Publication: 2016-02-01 14:15:22

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Sun, 31 Jan 2016

New package RKEEL with initial version 1.1.5
Package: RKEEL
Type: Package
Title: Using Keel in R Code
Version: 1.1.5
Depends: R (>= 3.0)
Date: 2016-01-31
Authors@R: c( person("Jose", "Moyano", email = "i02momuj@uco.es", role = c("aut", "cre")), person("Luciano", "Sanchez Ramos", email = "luciano@uniovi.es", role = "aut") )
Author: Jose Moyano [aut, cre], Luciano Sanchez Ramos [aut]
Maintainer: Jose Moyano <i02momuj@uco.es>
Description: KEEL is a popular Java software for a large number of different knowledge data discovery tasks. This package takes the advantages of KEEL and R, allowing to use KEEL algorithms in simple R code. The implemented R code layer between R and KEEL makes easy both using KEEL algorithms in R as implementing new algorithms for 'RKEEL' in a very simple way. It includes more than 100 algorithms for classification, regression and preprocess, which allows a more complete experimentation process. For more information about KEEL, see <http://www.keel.es/>.
SystemRequirements: Java (>= 7.0)
License: GPL
Imports: R6, XML, doParallel, foreach, gdata, RKEELjars, RKEELdata
NeedsCompilation: no
Packaged: 2016-01-31 11:51:29 UTC; jose
Repository: CRAN
Date/Publication: 2016-01-31 16:36:42

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New package revealjs with initial version 0.5.0
Package: revealjs
Type: Package
Title: R Markdown Format for 'reveal.js' Presentations
Version: 0.5.0
Date: 2015-01-30
Authors@R: c( person("Hakim", "El Hattab", role = c("aut", "cph"), comment = "reveal.js-3.2.0, https://github.com/hakimel/reveal.js"), person("JJ", "Allaire", role = c("aut", "cre"), email = "jj@rstudio.com"), person(family = "RStudio", role = "cph") )
Description: R Markdown format for 'reveal.js' presentations, a framework for easily creating beautiful presentations using HTML.
License: MIT + file LICENSE
URL: https://github.com/rstudio/revealjs
BugReports: https://github.com/rstudio/revealjs/issues
Depends: R (>= 3.0)
Imports: rmarkdown(>= 0.3.3)
Suggests: testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-31 01:40:51 UTC; jjallaire
Author: Hakim El Hattab [aut, cph] (reveal.js-3.2.0, https://github.com/hakimel/reveal.js), JJ Allaire [aut, cre], RStudio [cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Repository: CRAN
Date/Publication: 2016-01-31 16:36:51

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New package backblazer with initial version 0.1.0
Package: backblazer
Type: Package
Title: Bindings to the Backblaze B2 API
Version: 0.1.0
Date: 2016-01-29
Author: Authors@R: person("Phill", "Clarke", email = "phill@starkingdom.co.uk", role = c("aut", "cre"))
Maintainer: Phill Clarke <phill@starkingdom.co.uk>
Description: Provides convenience functions for the Backblaze B2 cloud storage API (see https://www.backblaze.com/b2/docs/). All B2 API calls are mapped to equivalent R functions. Files can be easily uploaded, downloaded and deleted from B2, all from within R programs.
Depends: R (>= 3.2.3)
License: MIT + file LICENSE
URL: https://github.com/phillc73/backblazer
BugReports: http://www.github.com/phillc73/backblazer/issues
LazyData: TRUE
Imports: httr (>= 1.0.0), jsonlite (>= 0.9.19), openssl (>= 0.9.1), tools (>= 3.2.3)
Suggests: knitr (>= 1.12), rmarkdown
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-31 15:04:57 UTC; phillc
Repository: CRAN
Date/Publication: 2016-01-31 16:36:49

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New package psoptim with initial version 1.0
Package: psoptim
Version: 1.0
Date: 2016-01-30
Title: Particle Swarm Optimization
Depends: R (>= 2.0.0)
Authors@R: c(person("Krzysztof", "Ciupke", role = c("aut", "cre"), email = "krzysztof.ciupke@polsl.pl") )
Author: Krzysztof Ciupke [aut, cre]
Maintainer: Krzysztof Ciupke <krzysztof.ciupke@polsl.pl>
Description: Particle swarm optimization - a basic variant.
License: GPL (>= 2.0)
URL: https://www.r-project.org
Packaged: 2016-01-30 18:13:12 UTC; kciupke
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-01-31 12:22:33

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New package permGPU with initial version 0.14.8
Package: permGPU
Type: Package
Title: Using GPUs in Statistical Genomics
Version: 0.14.8
Date: 2016-01-26
Authors@R: c(person(c("Ivo", "D."), "Shterev", role = c("aut", "cre"), email = "i.shterev@duke.edu"), person("Kouros", "Owzar", role = "aut"), person("Sin-Ho", "Jung", role = "aut"), person(c("Stephen", "L."), "George", role = "aut"), person(c("Brian", "J."), "Smith", role = c("ctb", "cph"), comment="wrote original version of configure.ac file"), person("Kenneth", "Wilder", role = c("ctb", "cph"), comment="wrote ranker.h"), person("Romain", "Francois", role = c("ctb", "cph"), comment="wrote original version of cleanup file"), person("Dirk", "Eddelbuettel", role = c("ctb", "cph"), comment="wrote original version of cleanup file") )
SystemRequirements: Nvidia's CUDA toolkit (>= release 6.0)
OS_type: linux
Description: Can be used to carry out permutation resampling inference in the context of RNA microarray studies.
Depends: R (>= 2.15.3), Biobase (>= 2.18.0), RUnit (>= 0.4.26), foreach (>= 1.4.2), survival(>= 2.37-7), methods
License: GPL-3
LazyLoad: yes
Repository: CRAN
Packaged: 2016-01-29 20:45:02 UTC; is33
Date/Publication: 2016-01-31 12:45:11
NeedsCompilation: yes
Author: Ivo D. Shterev [aut, cre], Kouros Owzar [aut], Sin-Ho Jung [aut], Stephen L. George [aut], Brian J. Smith [ctb, cph] (wrote original version of configure.ac file), Kenneth Wilder [ctb, cph] (wrote ranker.h), Romain Francois [ctb, cph] (wrote original version of cleanup file), Dirk Eddelbuettel [ctb, cph] (wrote original version of cleanup file)
Maintainer: Ivo D. Shterev <i.shterev@duke.edu>

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Sat, 30 Jan 2016

New package asymLD with initial version 0.1
Package: asymLD
Type: Package
Title: Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data
Version: 0.1
Date: 2016-01-29
Author: Richard M. Single
Maintainer: Richard M. Single <rsingle@uvm.edu>
Suggests: haplo.stats, fields
LazyLoad: Yes
Description: Computes asymmetric LD measures (ALD) for multi-allelic genetic data. These measures are identical to the correlation measure (r) for bi-allelic data.
License: GPL-2
Packaged: 2016-01-30 15:57:20 UTC; Rich
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-01-30 19:00:02

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New package stripless with initial version 1.0
Package: stripless
Type: Package
Title: Structured Trellis Displays Without Strips for Lattice Graphics
Version: 1.0
Date: 2016-01-30
Authors@R: person("Bert", "Gunter", email = "bgunter@comcast.net", role = c("aut","cre") )
Description: For making Trellis-type conditioning plots without strip labels. This is useful for displaying the structure of results from factorial designs and other studies when many conditioning variables would clutter the display with layers of redundant strip labels. Settings of the variables are encoded by layout and spacing in the trellis array and decoded by a separate legend. The functionality is implemented by a single S3 generic strucplot() function that is a wrapper for the Lattice package's xyplot() function. This allows access to all Lattice graphics capabilities in the usual way.
License: GPL-2 | GPL-3
Depends: utils,lattice
Suggests: datasets,grDevices
Imports: stats,graphics,grid
LazyData: true
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-30 00:53:23 UTC; bgunter
Author: Bert Gunter [aut, cre]
Maintainer: Bert Gunter <bgunter@comcast.net>
Repository: CRAN
Date/Publication: 2016-01-30 10:04:29

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Fri, 29 Jan 2016

New package ggpmisc with initial version 0.2.5
Package: ggpmisc
Type: Package
Title: Miscellaneous Extensions to 'ggplot2'
Version: 0.2.5
Date: 2016-01-28
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Description: Implements extensions to 'ggplot2' respecting the grammar of graphics paradigm. Provides new stats to locate and tag peaks and valleys in 2D plots, a stat to add a label by group with the equation of a polynomial fitted with lm(), or R^2 or adjusted R^2 values for any model fitted with function lm(). Provides a function for flexibly converting time series to data frames suitable for plotting with ggplot(). In addition provides two stats useful for diagnosing what data are passed to compute_group() and compute_panel() functions.
License: GPL (>= 3)
LazyData: TRUE
LazyLoad: TRUE
ByteCompile: TRUE
Depends: R (>= 3.2.0)
Imports: ggplot2 (>= 2.0.0), polynom (>= 1.3-8), splus2R (>= 1.2-0), xts (>= 0.9-7), zoo (>= 1.7-12), lubridate (>= 1.5.0)
Suggests: knitr (>= 1.12.3), rmarkdown (>= 0.9.2)
URL: http://www.r4photobiology.info
BugReports: https://bitbucket.org/aphalo/ggpmisc
RoxygenNote: 5.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-01-29 21:53:31 UTC; aphalo
Repository: CRAN
Date/Publication: 2016-01-30 00:29:16

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New package cmprskQR with initial version 0.9.1
Package: cmprskQR
Version: 0.9.1
Date: 2016-01-29
Title: Analysis of Competing Risks Using Quantile Regressions
Author: Stephan Dlugosz, based on code from Limin Peng and Ruosha Li
Maintainer: Stephan Dlugosz <stephan.dlugosz@googlemail.com>
Depends: R (>= 2.13.0)
Imports: graphics, quantreg, stats, survival
Description: Estimation, testing and regression modeling of subdistribution functions in competing risks using quantile regressions, as described in Peng and Fine (2009) <DOI:10.1198/jasa.2009.tm08228>.
License: GPL (>= 2)
URL: https://bitbucket.org/sdlugosz/cmprskqr
NeedsCompilation: yes
Repository: CRAN
Packaged: 2016-01-29 20:12:25 UTC; Stephan
X-CRAN-Comment: Archived on 2015-07-01 as maintainer address <dlugosz@zew.de> bounced.
Date/Publication: 2016-01-29 22:22:24

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New package alakazam with initial version 0.2.2
Package: alakazam
Type: Package
Version: 0.2.2
Date: 2016-01-29
Authors@R: c(person("Jason", "Vander Heiden", role=c("aut", "cre"), email="jason.vanderheiden@yale.edu"), person("Namita", "Gupta", role=c("ctb"), email="namita.gupta@yale.edu"), person("Daniel", "Gadala-Maria", role=c("ctb"), email="daniel.gadala-maria@yale.edu"), person("Susanna", "Marquez", role=c("ctb"), email="susanna.marquez@yale.edu"), person("Roy", "Jiang", role=c("ctb"), email="ruoyi.jiang@yale.edu"))
Title: Immunoglobulin Clonal Lineage and Diversity Analysis
Description: Core functionality, lineage reconstruction, and diversity analysis, and amino acid property analysis components of the Change-O tool suite.
License: CC BY-NC-SA 4.0
URL: http://clip.med.yale.edu/changeo
BugReports: https://bitbucket.org/kleinstein/alakazam/issues
LazyData: true
BuildVignettes: true
VignetteBuilder: knitr
Depends: R (>= 3.0.0), ggplot2
Imports: dplyr, graphics, grid, igraph (>= 1.0.0), lazyeval, methods, scales, seqinr, stats, stringi, utils
Suggests: knitr, rmarkdown, testthat
RoxygenNote: 5.0.1
Collate: 'Alakazam.R' 'AminoAcids.R' 'Core.R' 'Diversity.R' 'GeneUsage.R' 'Lineage.R' 'Sequence.R'
NeedsCompilation: no
Packaged: 2016-01-29 20:03:31 UTC; jason
Author: Jason Vander Heiden [aut, cre], Namita Gupta [ctb], Daniel Gadala-Maria [ctb], Susanna Marquez [ctb], Roy Jiang [ctb]
Maintainer: Jason Vander Heiden <jason.vanderheiden@yale.edu>
Repository: CRAN
Date/Publication: 2016-01-29 22:26:44

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New package TwoPhaseInd with initial version 1.1.0
Package: TwoPhaseInd
Type: Package
Title: Two-Phase Independence
Version: 1.1.0
Authors@R: c(person("James", "Dai", role = c("aut", "cre"), email = "jdai@fredhutch.org"), person("Xiaoyu", "Wang", role = c("aut")))
Author: James Dai [aut, cre], Xiaoyu Wang [aut]
Maintainer: James Dai <jdai@fredhutch.org>
Description: Estimation of gene-treatment interactions in randomized clinical trials exploiting gene-treatment independence.
License: GPL (>= 2)
LazyLoad: no
Packaged: 2016-01-28 01:33:51 UTC; Administrator
NeedsCompilation: yes
Imports: survival
Repository: CRAN
Date/Publication: 2016-01-29 07:10:00

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New package pinfsc50 with initial version 1.0.0
Package: pinfsc50
Title: Sequence ("Fasta"), Annotation ("Gff") and Variants ("Vcf") for 17 Samples of "P. Infestans" and 1 "P. Mirabilis"
Version: 1.0.0
Authors@R: c(person(c("Brian", "J."), "Knaus", role = c("cre", "aut"), email = "briank.lists@gmail.com"), person(c("Niklaus", "J."), "Grunwald", role = "aut", email = "grunwaln@science.oregonstate.edu"))
Maintainer: Brian J. Knaus <briank.lists@gmail.com>
Description: Genomic data for the plant pathogen "Phytophthora infestans." It includes a variant file ("vcf") sequence file ("fasta") and an annotation file ("gff"). This package is intended to be used as example data for packages that work with genomic data.
Depends: R (>= 3.2.1)
License: GPL
LazyData: true
NeedsCompilation: no
Packaged: 2016-01-28 21:50:32 UTC; knausb
Author: Brian J. Knaus [cre, aut], Niklaus J. Grunwald [aut]
Repository: CRAN
Date/Publication: 2016-01-29 05:58:03

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Thu, 28 Jan 2016

New package designmatch with initial version 0.1
Package: designmatch
Type: Package
Title: Construction of Optimally Matched Samples for Randomized Experiments and Observational Studies that are Balanced by Design
Version: 0.1
Date: 2016-01-23
Author: Jose R. Zubizarreta <zubizarreta@columbia.edu>, Cinar Kilcioglu <ckilcioglu16@gsb.columbia.edu>
Maintainer: Jose R. Zubizarreta <zubizarreta@columbia.edu>
Depends: R (>= 3.2), lattice, MASS, slam, Rglpk
Suggests: gurobi, Rcplex, Rsymphony
SystemRequirements: GLPK library package (e.g., libglpk-dev on Debian/Ubuntu)
License: GPL-2 | GPL-3
Description: Includes functions for the construction of matched samples that are balanced by design. These functions include options for directly balancing means, higher order moments and distributions of the covariates, that can be used in observational studies with treatment and control units, cases and controls, and more generally in settings with instrumental variables and in discontinuity designs. These functions can also be used for the design of randomized experiments, for example for matching before randomization. The performance of these functions is greatly enhanced by the Gurobi optimization solver and its associated R interface. For their installation, please follow the instructions at http://user.gurobi.com/download/gurobi-optimizer and http://www.gurobi.com/documentation/6.5/refman/r_api_overview.html; also, we have included direction in the gurobi_installation file in the inst folder.
NeedsCompilation: no
Packaged: 2016-01-28 20:55:24 UTC; jrz
Repository: CRAN
Date/Publication: 2016-01-29 00:36:19

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New package ggiraph with initial version 0.1.0
Package: ggiraph
Type: Package
Title: Make 'ggplot2' Graphics Interactive Using 'htmlwidgets'
Description: Create interactive 'ggplot2' graphics that are usable in the 'RStudio' viewer pane, in 'R Markdown' documents and in 'Shiny' apps.
Version: 0.1.0
Authors@R: c( person("David", "Gohel", role = c("aut", "cre"), email = "david.gohel@ardata.fr"), person("Bootstrap", role = c("ctb", "cph"), comment = "Bootstrap development team"), person("jQuery", role = c("ctb", "cph"), comment = "The jQuery Foundation") )
License: GPL-3
Copyright: See file COPYRIGHTS.
Depends: ggplot2 (>= 2.0.0)
Imports: grid, htmlwidgets (>= 0.5), htmltools, stats, plyr, rvg (>= 0.0.6), xml2
Suggests: knitr, rmarkdown, maps, shiny
VignetteBuilder: knitr
BugReports: https://github.com/davidgohel/ggiraph/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-28 19:48:36 UTC; davidgohel
Author: David Gohel [aut, cre], Bootstrap [ctb, cph] (Bootstrap development team), jQuery [ctb, cph] (The jQuery Foundation)
Maintainer: David Gohel <david.gohel@ardata.fr>
Repository: CRAN
Date/Publication: 2016-01-28 21:23:54

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New package FMP with initial version 1.1
Package: FMP
Version: 1.1
Date: 2016-01-28
Title: Filtered Monotonic Polynomial IRT Models
Author: Niels G. Waller <nwaller@umn.edu>
Maintainer: Niels G. Waller <nwaller@umn.edu>
Depends: R (>= 3.0)
Description: Estimates Filtered Monotonic Polynomial IRT Models as described by Liang and Browne (2015) <DOI:10.3102/1076998614556816>.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-01-28 19:52:43 UTC; nielswaller
Repository: CRAN
Date/Publication: 2016-01-28 21:23:52

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New package pubprint with initial version 0.1.1
Package: pubprint
Version: 0.1.1
Date: 2016-01-28
Title: Printing Results of Statistical Computing in a Publishable Way
Description: Takes the output of statistical tests and transforms it in a publish-friendly pattern. Currently only APA style is supported with output to HTML, LaTeX, Markdown and plain text. It is easily extendable and can be used well with 'knitr'.
Author: Rudolf Siegel [aut, cre]
Maintainer: Rudolf Siegel <rs.os@t-online.de>
Authors@R: c(person("Rudolf", "Siegel", role = c("aut", "cre"), email = "rs.os@t-online.de"))
URL: https://bitbucket.org/mutluyum/pubprint/
BugReports: https://bitbucket.org/mutluyum/pubprint/issues/
License: BSD_2_clause + file LICENSE
VignetteBuilder: knitr
Depends: R (>= 3.0.2)
Imports: stringr
Suggests: knitr, testthat
Collate: 'utils.R' 'style_default.R' 'style_apa.R' 'style.R' 'out_plain.R' 'out_default.R' 'out_html.R' 'out_markdown.R' 'out_latex.R' 'out.R' 'defaults.R' 'io.R' 'pubprint.R'
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-28 15:54:45 UTC; fire
Repository: CRAN
Date/Publication: 2016-01-28 20:45:39

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New package IMak with initial version 1.0.0
Package: IMak
Type: Package
Title: Item Maker
Version: 1.0.0
Date: 2016-01-20
Authors@R: person("Diego", "Blum", email = "blumworx@gmail.com", role = c("aut", "cre"))
Description: This is an Automatic Item Generator for Psychological Testing. It is recommended for research purposes only.
Imports: grDevices, graphics, utils
License: GPL-3
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-28 09:13:15 UTC; Blumworx
Author: Diego Blum [aut, cre]
Maintainer: Diego Blum <blumworx@gmail.com>
Repository: CRAN
Date/Publication: 2016-01-28 20:45:28

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New package covsep with initial version 1.0.0
Package: covsep
Title: Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable
Version: 1.0.0
Authors@R: c(person("Shahin", "Tavakoli", email = "s.tavakoli@statslab.cam.ac.uk", role = c("aut", "cre")), person("Davide", "Pigoli", email = "dp497@cam.ac.uk", role = c("ctb")), person("John", "Aston", email = "j.aston@statslab.cam.ac.uk", role = c("ctb")))
Author: Shahin Tavakoli [aut, cre], Davide Pigoli [ctb], John Aston [ctb]
Maintainer: Shahin Tavakoli <s.tavakoli@statslab.cam.ac.uk>
Description: Functions for testing if the covariance structure of 2-dimensional data (e.g. samples of surfaces X_i = X_i(s,t)) is separable, i.e. if covariance(X) = C_1 x C_2. A complete descriptions of the implemented tests can be found in the paper arXiv:1505.02023.
Depends: R (>= 3.2.3)
Imports: mvtnorm (>= 1.0.4)
License: GPL-2
LazyData: true
URL: http://arxiv.org/abs/1505.02023
NeedsCompilation: no
Packaged: 2016-01-28 14:55:55 UTC; stavakol
Repository: CRAN
Date/Publication: 2016-01-28 20:45:37

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New package mapr with initial version 0.2.0
Package: mapr
Title: 'Visualize' Species Occurrence Data
Description: Utilities for 'vizualizing' species occurrence data. Includes functions to 'vizualize' occurrence data from 'spocc', 'rgbif', and other packages. Mapping options included for base R plots, 'ggplot2', and various interactive maps.
Version: 0.2.0
License: MIT + file LICENSE
Authors@R: person("Scott", "Chamberlain", role = c("aut", "cre"), email = "myrmecocystus@gmail.com")
URL: https://github.com/ropensci/mapr
BugReports: https://github.com/ropensci/mapr/issues
LazyData: true
VignetteBuilder: knitr
Imports: methods, utils, stats, graphics, ggplot2, leaflet, spocc (>= 0.4.5), sp, rworldmap, RColorBrewer, httr (>= 1.0.0), gistr
Suggests: testthat, ggmap, knitr, taxize, maptools
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-28 06:30:52 UTC; sacmac
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Repository: CRAN
Date/Publication: 2016-01-28 10:09:34

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New package easypackages with initial version 0.1.0
Package: easypackages
Title: Easy Loading and Installing of Packages
Version: 0.1.0
Authors@R: person("Jake", "Sherman", email = "jake@jakesherman.com", role = c("aut", "cre"))
Description: Easily load and install multiple packages from different sources, including CRAN and GitHub. The libraries function allows you to load or attach multiple packages in the same function call. The packages function will load one or more packages, and install any packages that are not installed on your system (after prompting you). Also included is a from_import function that allows you to import specific functions from a package into the global environment.
Depends: R (>= 3.0.0)
Imports: assertthat, devtools, utils
License: MIT + file LICENSE
LazyData: true
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-01-17 01:02:30 UTC; jake
Author: Jake Sherman [aut, cre]
Maintainer: Jake Sherman <jake@jakesherman.com>
Repository: CRAN
Date/Publication: 2016-01-28 10:09:32

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Wed, 27 Jan 2016

New package MDMR with initial version 0.2.1
Package: MDMR
Type: Package
Title: Multivariate Distance Matrix Regression
Version: 0.2.1
Date: 2016-01-27
Author: Daniel B. McArtor (dmcartor@nd.edu) [aut, cre]
Maintainer: Daniel B. McArtor <dmcartor@nd.edu>
Description: Allows a user to conduct multivariate distance matrix regression using analytic p-values and compute measures of effect size.
License: GPL (>= 2)
LazyData: TRUE
Depends: R (>= 3.0.0),
Imports: CompQuadForm, parallel
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
URL: http://github.com/dmcartor/mdmr
BugReports: http://github.com/dmcartor/mdmr/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-27 20:00:51 UTC; dmcartor
Repository: CRAN
Date/Publication: 2016-01-28 00:21:13

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New package IRTpp with initial version 0.1.5
Package: IRTpp
Type: Package
Title: Estimating IRT Parameters using the IRT Methodology
Version: 0.1.5
Date: 2016-01-15
Author: Developed by SICS Research Group
Maintainer: Cristian Sandoval Pineda <cesandovalp@unal.edu.co>
Description: An implementation of the IRT paradigm for the scoring of different instruments measuring latent traits (a.k.a Abilities) and estimating item parameters for a variety of models, this package is highly optimized using Rcpp and carefully written R for the rest of the package, it aims to expand IRT applications to those applications that require faster and more robust estimation procedures. See the IRTpp documentation and github site for more information and examples.
License: GPL-3
LinkingTo: Rcpp
Imports: Rcpp (>= 0.11.0), mvtnorm, numDeriv, FactoMineR, MASS
Suggests: knitr, optimx
VignetteBuilder: knitr
URL: http://github.com/SICSResearch/IRTpp
BugReports: http://github.com/SICSResearch/IRTpp/issues
NeedsCompilation: yes
Packaged: 2016-01-27 19:27:50 UTC; liberato
RoxygenNote: 5.0.1
Repository: CRAN
Date/Publication: 2016-01-28 00:25:27

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New package iRafNet with initial version 0.1-1
Package: iRafNet
Version: 0.1-1
Date: 2016-01-26
Title: Integrative Random Forest for Gene Regulatory Network Inference
Authors@R: c(person("Francesca Petralia", "Developer", role = c("aut", "cre"), email = "francesca.petralia@mssm.edu"), person("Pei Wang", "Developer", role = "aut"), person("Zhidong Tu", "Developer", role = "aut"), person("Jialiang Yang", "Developer", role = "aut"), person("Adele Cutler", "Developer", role = "ctb"), person("Leo Breiman", "Developer", role = "ctb"), person("Andy Liaw", "Developer", role = "ctb"), person("Matthew Wiener", "Developer", role = "ctb"))
Depends: R (>= 3.0.0)
Description: Provides a flexible integrative algorithm that allows information from prior data, such as protein protein interactions and gene knock-down, to be jointly considered for gene regulatory network inference.
License: GPL (>= 2)
URL: https://www.r-project.org
Packaged: 2016-01-27 21:00:16 UTC; petraf01
Author: Francesca Petralia Developer [aut, cre], Pei Wang Developer [aut], Zhidong Tu Developer [aut], Jialiang Yang Developer [aut], Adele Cutler Developer [ctb], Leo Breiman Developer [ctb], Andy Liaw Developer [ctb], Matthew Wiener Developer [ctb]
Maintainer: Francesca Petralia Developer <francesca.petralia@mssm.edu>
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-01-28 00:21:12

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New package QCApro with initial version 1.0-0
Package: QCApro
Version: 1.0-0
Date: 2016-01-27
Title: Professional Functionality for Performing and Evaluating Qualitative Comparative Analysis
Authors@R: c(person("Alrik", "Thiem", role = c("aut", "cre"), email = "alrik.thiem@unige.ch"), person("Michael", "Baumgartner", role = "ctb"), person("Adrian", "Dusa", role = "ctb", comment = "co-author of package 'QCA' (predecessor of 'QCApro', versions 1.0-0 to 1.1-4"), person("Reto", "Spoehel", role = "ctb") )
URL: http://www.alrik-thiem.net/; https://www.researchgate.net/profile/Alrik_Thiem
Depends: R (>= 3.2.2)
Suggests: QCA3 (<= 0.0-7), QCAGUI (<= 2.0), testthat (<= 0.11.0)
Imports: lpSolve, utils
Description: With numerous improvements on its predecessor package 'QCA', the 'QCApro' package provides professional functionality for performing configurational comparative research with Qualitative Comparative Analysis (QCA), including crisp-set QCA, multi-value QCA, and fuzzy-set QCA. It also offers advanced tools for methodological evaluations.
License: GPL-3
NeedsCompilation: yes
Packaged: 2016-01-27 08:12:09 UTC; Alrik Thiem
Author: Alrik Thiem [aut, cre], Michael Baumgartner [ctb], Adrian Dusa [ctb] (co-author of package 'QCA' (predecessor of 'QCApro', versions 1.0-0 to 1.1-4), Reto Spoehel [ctb]
Maintainer: Alrik Thiem <alrik.thiem@unige.ch>
Repository: CRAN
Date/Publication: 2016-01-27 18:18:30

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Tue, 26 Jan 2016

New package rredlist with initial version 0.1.0
Package: rredlist
Type: Package
Title: 'IUCN' Red List Client
Description: 'IUCN' Red List (<http://apiv3.iucnredlist.org/api/v3/docs>) client. The 'IUCN' Red List is a global list of threatened and endangered species. Functions cover all of the Red List 'API' routes. An 'API' key is required.
Version: 0.1.0
Authors@R: c(person("Scott", "Chamberlain", role = c("aut", "cre"), email = "myrmecocystus@gmail.com"))
License: MIT + file LICENSE
URL: https://github.com/ropenscilabs/rredlist
BugReports: https://github.com/ropenscilabs/rredlist/issues
Imports: httr (>= 1.0.0), jsonlite (>= 0.9.19)
Suggests: testthat
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-26 20:40:50 UTC; sacmac
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Repository: CRAN
Date/Publication: 2016-01-26 22:30:21

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New package obAnalytics with initial version 0.1.0
Package: obAnalytics
Title: Limit Order Book Analytics
Version: 0.1.0
Description: Data processing, visualisation and analysis of Limit Order Book event data.
Author: Philip Stubbings
Maintainer: Philip Stubbings <phil@parasec.net>
Date: 2016-01-24
URL: https://github.com/phil8192/ob-analytics
BugReports: https://github.com/phil8192/ob-analytics/issues
License: GPL (>= 2)
Depends: R (>= 3.1.1)
Imports: zoo, ggplot2, reshape2, utils
Suggests: grid, rmarkdown, knitr, testthat
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-26 17:57:09 UTC; phil
Repository: CRAN
Date/Publication: 2016-01-26 23:06:35

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New package SteinIV with initial version 0.1-1
Package: SteinIV
Version: 0.1-1
Date: 2016-01-01
Title: Semi-Parametric Stein-Like Estimator with Instrumental Variables
Author: Cedric E Ginestet <cedric.ginestet@kcl.ac.uk>
Maintainer: Cedric E Ginestet <cedric.ginestet@kcl.ac.uk>
Depends: R (>= 2.10.1)
Description: Routines for computing different types of linear estimators, based on instrumental variables (IVs), including the semi-parametric Stein-like (SPS) estimator, originally introduced by Judge and Mittelhammer (2004) <DOI:10.1198/016214504000000430>.
License: GPL (>= 2)
URL: https://cran.r-project.org/package=SteinIV
LazyLoad: yes
Packaged: 2016-01-26 14:03:42 UTC; cgineste
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-01-26 15:19:33

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New package reddPrec with initial version 0.1
Package: reddPrec
Type: Package
Title: Reconstruction of Daily Data - Precipitation
Version: 0.1
Date: 2016-01-22
Author: Roberto Serrano-Notivoli
Maintainer: Roberto Serrano-Notivoli <rs@unizar.es>
Description: Computes quality control to daily precipitation datasets, reconstructs the original series by estimating precipitation in missing values, creates new series in a specified pair of coordinates and creates grids.
License: GPL (>= 3)
LazyData: yes
Depends: snowfall
NeedsCompilation: no
Packaged: 2016-01-26 11:20:09 UTC; dendroteam
Repository: CRAN
Date/Publication: 2016-01-26 14:20:21

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New package distance.sample.size with initial version 0.0
Package: distance.sample.size
Type: Package
Title: Calculates Study Size Required for Distance Sampling
Version: 0.0
Date: 2015-12-17
Author: Robert Clark
Maintainer: Robert Clark <rclark@uow.edu.au>
Description: Calculates the study size (either number of detections, or proportion of region that should be covered) to achieve a target precision for the estimated abundance. The calculation allows for the penalty due to unknown detection function, and for overdispersion. The user must specify a guess at the true detection function.
License: GPL-2 | GPL-3
LazyData: TRUE
Imports: MASS
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-24 00:29:12 UTC; rclark
Repository: CRAN
Date/Publication: 2016-01-26 07:44:17

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Mon, 25 Jan 2016

New package activpalProcessing with initial version 1.0
Package: activpalProcessing
Type: Package
Title: Process activPAL Events Files
Version: 1.0
Date: 2015-12-30
Author: Kate Lyden
Maintainer: Kate Lyden <activpalProcessing@gmail.com>
Description: Performs estimation of physical activity and sedentary behavior variables from activPAL (PAL Technologies, Glasgow, Scotland) events files. See <http://paltechnologies.com> for more information on the activPAL.
License: GPL-2 | GPL-3
LazyLoad: yes
Depends: R (>= 2.10), graphics, grDevices, stats, utils
Imports: chron
LazyData: yes
Packaged: 2016-01-25 18:57:01 UTC; klyden
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-01-26 00:22:47

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New package coenoflex with initial version 2.1-0
Package: coenoflex
Version: 2.1-0
Date: 2016-01-23
Title: Gradient-Based Coenospace Vegetation Simulator
Author: David W. Roberts <droberts@montana.edu>
Maintainer: David W. Roberts <droberts@montana.edu>
Depends: mgcv
Description: Simulates the composition of samples of vegetation according to gradient-based vegetation theory. Features a flexible algorithm incorporating competition and complex multi-gradient interaction.
License: GPL (>= 2)
Packaged: 2016-01-23 23:35:52 UTC; dvrbts
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2016-01-25 14:37:43

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Sun, 24 Jan 2016

New package VertexSimilarity with initial version 0.1
Package: VertexSimilarity
Version: 0.1
Title: Creates Vertex Similarity Matrix for an Undirected Graph
Description: Creates Vertex Similarity matrix of an undirected graph based on the method stated by E. A. Leicht, Petter Holme, AND M. E. J. Newman in their paper <DOI:10.1103/PhysRevE.73.026120>.
Imports: igraph
License: GPL-2
LazyData: true
Packaged: 2016-01-24 20:13:15 UTC; a
Author: Rishabh Singh
Maintainer: Rishabh Singh<rishabhsinghrsg@gmail.com>
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-01-24 21:37:10

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New package sommer with initial version 1.1
Package: sommer
Type: Package
Title: Solving Mixed Model Equations in R
Version: 1.1
Date: 2016-01-06
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <covarrubiasp@wisc.edu>
Description: General mixed model equations solver, allowing the specification of variance covariance matrices of random effects and residual structures.
Depends: R (>= 2.10), Matrix (>= 1.1.1), methods, stats
License: GPL-3
URL: http://www.wisc.edu
Packaged: 2016-01-24 18:27:40 UTC; cova_ruber
Imports: parallel, plotrix, matrixcalc, RColorBrewer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2016-01-24 21:22:39

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New package pdolsms with initial version 0.1
Package: pdolsms
Title: Panel Dynamic OLS Estimation of Cointegrating Vectors
Version: 0.1
Authors@R: person("Raad", "Khraishi", email = "raadkhraishi+pdolsms@gmail.com", role = c("aut", "cre"))
Description: Estimates panel data cointegrating relationships following the estimator of Mark and Sul (2003), <DOI:10.1111/j.1468-0084.2003.00066.x>.
Depends: R (>= 3.2.2)
Imports: reshape2, stats
License: GPL (>= 3)
LazyData: true
NeedsCompilation: no
Packaged: 2016-01-24 18:07:18 UTC; rkhraishi
Author: Raad Khraishi [aut, cre]
Maintainer: Raad Khraishi <raadkhraishi+pdolsms@gmail.com>
Repository: CRAN
Date/Publication: 2016-01-24 21:22:42

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New package DiffusionRjgqd with initial version 0.1.0
Package: DiffusionRjgqd
Version: 0.1.0
Title: Inference and Analysis for Jump Generalized Quadratic Diffusions
Description: Tools for performing inference and analysis on a class of quadratic jump diffusion processes.
Authors@R: c(person("Etienne A.D.", "Pienaar", email = "etiennead@gmail.com",role = c("aut", "cre")), person("Melvin M.", "Varughese", email = "melvin.varughese@uct.ac.za",role = c("ctb")))
URL: https://github.com/eta21
BugReports: https://github.com/eta21/DiffusionRjgqd/issues
MailingList: Please send questions and comments to etiennead@gmail.com.
Depends: R (>= 3.2.1)
Imports: Rcpp, RcppArmadillo, rgl, colorspace
LinkingTo: Rcpp, RcppArmadillo
Suggests: DiffusionRgqd, knitr, coda, Quandl, R.rsp
License: GPL (>= 2)
VignetteBuilder: knitr, R.rsp
NeedsCompilation: yes
Packaged: 2016-01-21 18:16:23 UTC; Etienne
Author: Etienne A.D. Pienaar [aut, cre], Melvin M. Varughese [ctb]
Maintainer: Etienne A.D. Pienaar <etiennead@gmail.com>
Repository: CRAN
Date/Publication: 2016-01-24 21:21:02

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New package RKEELjars with initial version 1.0.4
Package: RKEELjars
Type: Package
Title: Java Executable .jar Files for 'RKEEL'
Version: 1.0.4
Date: 2016-01-23
Authors@R: c( person("Jose", "Moyano", email = "i02momuj@uco.es", role = c("aut", "cre")), person("Luciano", "Sanchez Ramos", email = "luciano@uniovi.es", role = "aut") )
Author: Jose Moyano [aut, cre], Luciano Sanchez Ramos [aut]
Maintainer: Jose Moyano <i02momuj@uco.es>
Description: KEEL is a popular Java software for a large number of different knowledge data discovery tasks. Furthermore, 'RKEEL' is a package with a R code layer between R and KEEL, for using KEEL in R code. This package downloads and install the .jar files necessary for 'RKEEL' algorithms execution. For more information about KEEL, see <http://www.keel.es/>.
License: GPL-3
Imports: downloader
NeedsCompilation: no
Packaged: 2016-01-23 09:37:11 UTC; jose
Repository: CRAN
Date/Publication: 2016-01-24 15:45:18

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Fri, 22 Jan 2016

New package fullfact with initial version 1.0
Package: fullfact
Version: 1.0
Date: 2016-01-15
Title: Full Factorial Breeding Analysis
Author: Aimee Lee Houde [aut, cre], Trevor Pitcher [aut]
Maintainer: Aimee Lee Houde <aimee.lee.houde@gmail.com>
Depends: R (>= 3.2.2), lme4, afex
Description: Package for the analysis of full factorial breeding designs.
License: GPL (>= 2)
URL: http://www.r-project.org
BugReports: Aimee Lee Houde <aimee.lee.houde@gmail.com>
NeedsCompilation: no
Packaged: 2016-01-16 04:36:34 UTC; Aimee Lee
Repository: CRAN
Date/Publication: 2016-01-23 01:35:00

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New package ramsvm with initial version 2.0
Package: ramsvm
Type: Package
Title: Reinforced Angle-Based Multicategory Support Vector Machines
Version: 2.0
Date: 2016-01-20
Author: Chong Zhang, Yufeng Liu, and Shannon Holloway
Maintainer: Shannon Holloway <sthollow@ncsu.edu>
Depends: foreach, doParallel, methods, parallel, stats
Description: Provides a solution path for Reinforced Angle-based Multicategory Support Vector Machines, with linear learning, polynomial learning, and Gaussian kernel learning.
License: GPL-2
LazyLoad: yes
NeedsCompilation: yes
Packaged: 2016-01-22 16:37:40 UTC; sthollow
Repository: CRAN
Date/Publication: 2016-01-23 00:33:57

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New package lintools with initial version 0.1.0
Package: lintools
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
License: GPL-3
Title: Manipulation of Linear Systems of (in)Equalities
LazyData: no
Type: Package
LazyLoad: yes
Author: c(person("Mark", "van der Loo",role=c("cre","aut"),email="mark.vanderloo@gmail.com") , person("Edwin", "de Jonge", role="aut"))
Description: Variable elimination (Gaussian elimination, Fourier-Motzkin elimination), Moore-Penrose pseudoinverse, reduction to reduced row echelon form, value substitution, projecting a vector on the convex polytope described by a system of (in)equations, removing spurious columns and rows and collapse implied equalities.
Version: 0.1.0
URL: https://github.com/data-cleaning/lintools
BugReports: https://github.com/data-cleaning/lintools/issues
Date: 2016-01-22
Suggests: testthat, knitr
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-01-22 10:23:09 UTC; mark
Repository: CRAN
Date/Publication: 2016-01-22 14:28:14

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New package FreqProf with initial version 0.0.1
Package: FreqProf
Version: 0.0.1
Date: 2016-01-21
Authors@R: c( person("Robert", "Epstein",, "re@aibrt.org", "aut"), person("Thomas", "Boulier",, "thomas.boulier@polytechnique.edu", "aut"), person(c("Ronald", "E."), "Robertson",, "rrobertson@aibrt.org", c("cre", "aut")), person("Jonathan", "Mejia",, "mejiajon@yahoo.com", "ctb"), person("AIBRT", email = "info@aibrt.org", role = "cph") )
Title: Frequency Profiles Computing and Plotting
Description: Tools for generating an informative type of line graph, the frequency profile, which allows single behaviors, multiple behaviors, or the specific behavioral patterns of individual subjects to be graphed from occurrence/nonoccurrence behavioral data.
License: GPL-3
Depends: R (>= 3.2.2)
Imports: reshape2, ggplot2, shiny
LazyData: true
URL: https://github.com/AIBRT/FreqProf
BugReports: https://github.com/AIBRT/FreqProf/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-21 18:44:58 UTC; aibrt
Author: Robert Epstein [aut], Thomas Boulier [aut], Ronald E. Robertson [cre, aut], Jonathan Mejia [ctb], AIBRT [cph]
Maintainer: Ronald E. Robertson <rrobertson@aibrt.org>
Repository: CRAN
Date/Publication: 2016-01-21 23:48:21

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Thu, 21 Jan 2016

New package hopbyhop with initial version 1.0
Package: hopbyhop
Type: Package
Title: Transmissions and Receptions in a Hop by Hop Network
Version: 1.0
Date: 2016-01-20
Author: Christian E. Galarza, Jonathan M. Olate
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Description: Computes the expectation of the number of transmissions and receptions considering a Hop-by-Hop transport model with limited number of retransmissions per packet. It provides the theoretical results shown in Palma et. al.(2015) <DOI:10.1109/APCASE.2015.59> and also estimated values based on Monte Carlo simulations.
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2016-01-21 19:44:29 UTC; ra143711
Repository: CRAN
Date/Publication: 2016-01-21 23:32:38

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New package sclero with initial version 0.2
Package: sclero
Title: Measure Growth Patterns and Align Sampling Spots in Photographs
Version: 0.2
Date: 2016-01-21
Authors@R: c(person("Mikko", "Vihtakari", role=c("aut", "cre"), email="mikko.vihtakari@gmail.com"))
Maintainer: Mikko Vihtakari <mikko.vihtakari@gmail.com>
Description: Provides functions to measure growth patterns and align sampling spots in chronologically deposited materials. The package is intended for the fields of sclerochronology, dendrochronology and geology.
Depends: R (>= 3.0), RImageJROI, spatstat, plyr
License: GPL-3
LazyData: true
URL: https://github.com/MikkoVihtakari/sclero
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-21 17:43:54 UTC; mvi023
Author: Mikko Vihtakari [aut, cre]
Repository: CRAN
Date/Publication: 2016-01-21 19:06:11

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New package ABHgenotypeR with initial version 1.0.0
Package: ABHgenotypeR
Type: Package
Title: Easy Visualization of ABH Genotypes
Version: 1.0.0
Date: 2016-01-21
Authors@R: c( person("Stefan", "Reuscher", email = "reuscher.stefan@gmail.com", role = c("aut", "cre")), person("Tomoyuki", "Furuta", role = "aut"))
Description: Easy to use functions to visualize marker data from biparental populations. Useful for both analyzing and presenting genotypes in the ABH format.
License: GPL-3
URL: http://github.com/StefanReuscher/ABHgenotypeR
BugReports: http://github.com/StefanReuscher/ABHgenotypeR/issues
LazyData: TRUE
Imports: ggplot2, reshape2
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2016-01-21 03:39:37 UTC; Stefan
Author: Stefan Reuscher [aut, cre], Tomoyuki Furuta [aut]
Maintainer: Stefan Reuscher <reuscher.stefan@gmail.com>
Repository: CRAN
Date/Publication: 2016-01-21 08:26:38

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Wed, 20 Jan 2016

New package storr with initial version 1.0.0
Package: storr
Title: Simple Key Value Stores
Version: 1.0.0
Description: Creates and manages simple key-value stores. These can use a variety of approaches for storing the data. This package implements the base methods and support for file system and in-memory stores. A vignette shows how additional drivers can be created, and stubs exist for supporting 'Redis' databases.
Depends: R (>= 3.1.0)
License: MIT + file LICENSE
LazyData: true
Author: Rich FitzJohn
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Imports: R6 (>= 2.1.0), digest
Suggests: DBI, RSQLite, knitr, microbenchmark, testthat
VignetteBuilder: knitr
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-20 21:00:20 UTC; rich
Repository: CRAN
Date/Publication: 2016-01-20 23:46:53

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New package PGEE with initial version 1.0
Package: PGEE
Type: Package
Title: Penalized Generalized Estimating Equations in High-Dimension
Version: 1.0
Date: 2016-01-20
Author: Gul Inan (Visiting scholar, University of Minnesota), Jianhui Zhou (Associate Professor, University of Virginia) and Lan Wang (Professor, University of Minnesota)
Maintainer: Gul Inan <inanx002@umn.edu>
Description: Fits penalized generalized estimating equations to longitudinal data with high-dimensional covariates.
License: GPL (>= 2)
Depends: MASS, mvtnorm
NeedsCompilation: no
Packaged: 2016-01-20 16:05:18 UTC; gul
Repository: CRAN
Date/Publication: 2016-01-20 23:44:12

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New package ei with initial version 1.3
Package: ei
Version: 1.3
Date: 2016-01-20
Title: Ecological Inference
Author: Gary King <king@harvard.edu>, Molly Roberts <molly.e.roberts@gmail.com>
Maintainer: James Honaker <zelig-zee@iq.harvard.edu>
Depends: R (>= 2.5.0), eiPack
Imports: mvtnorm, msm, tmvtnorm, ellipse, plotrix, MASS, ucminf, cubature, mnormt, foreach, rgl, sp
Description: Software accompanying Gary King's book: A Solution to the Ecological Inference Problem. (1997). Princeton University Press. ISBN 978-0691012407.
License: GPL (>= 2)
URL: http://gking.harvard.edu/eiR, http://gking.harvard.edu/eicamera/kinroot.html
NeedsCompilation: no
Packaged: 2016-01-20 16:38:42 UTC; jhonaker
Repository: CRAN
Date/Publication: 2016-01-20 23:40:18

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New package miCoPTCM with initial version 1.0
Package: miCoPTCM
Type: Package
Title: Promotion Time Cure Model with Mis-Measured Covariates
Version: 1.0
Date: 2015-12-21
Author: Aurelie Bertrand, Catherine Legrand, Ingrid Van Keilegom
Maintainer: Aurelie Bertrand <aurelie.bertrand@uclouvain.be>
Imports: MASS, nleqslv, survival, compiler, distr
Description: Fits Semiparametric Promotion Time Cure Models, taking into account (using a corrected score approach or the SIMEX algorithm) or not the measurement error in the covariates, using a backfitting approach to maximize the likelihood.
License: GPL-2
NeedsCompilation: no
Packaged: 2016-01-20 15:24:34 UTC; aurbertrand
Repository: CRAN
Date/Publication: 2016-01-20 17:07:03

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New package icRSF with initial version 1.0
Package: icRSF
Type: Package
Title: A Modified Random Survival Forest Algorithm
Version: 1.0
Date: 2016-01-01
Author: Hui Xu and Raji Balasubramanian
Maintainer: Hui Xu <huix@schoolph.umass.edu>
Description: Implements a modification to the Random Survival Forests algorithm for obtaining variable importance in high dimensional datasets. The proposed algorithm is appropriate for settings in which a silent event is observed through sequentially administered, error-prone self-reports or laboratory based diagnostic tests. The modified algorithm incorporates a formal likelihood framework that accommodates sequentially administered, error-prone self-reports or laboratory based diagnostic tests. The original Random Survival Forests algorithm is modified by the introduction of a new splitting criterion based on a likelihood ratio test statistic.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.3), icensmis, parallel
LinkingTo: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-01-20 14:34:30 UTC; Ada_H_Xu
Repository: CRAN
Date/Publication: 2016-01-20 17:07:02

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New package hybridModels with initial version 0.2.6
Package: hybridModels
Version: 0.2.6
Title: Stochastic Hybrid Models in Dynamic Networks
Date: 2016-01-18
License: GPL (>= 2)
Depends: R (>= 3.2.3),
Imports: doParallel, foreach, ggplot2, GillespieSSA, parallel, reshape2, stats, stringr, grid
Description: Simulates stochastic hybrid models for transmission of infectious diseases in dynamic networks.
LazyLoad: true
LazyData: true
Authors@R: c(person(given = "Fernando", family = "S. Marques", email = "fernandosix@gmail.com", role = c("aut", "cre")), person(given = "Jose", family="H. H. Grisi-Filho", email = "zegrisi@gmail.com", role = "aut"), person(given = "Marcos", family = "Amaku", email = "marcos.amaku@gmail.com", role = "aut"))
Author: Fernando S. Marques [aut, cre], Jose H. H. Grisi-Filho [aut], Marcos Amaku [aut]
Maintainer: Fernando S. Marques <fernandosix@gmail.com>
URL: https://github.com/fernandosm/hybridModels
BugReports: https://github.com/fernandosm/hybridModels/issues
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-20 13:11:54 UTC; fernando
Repository: CRAN
Date/Publication: 2016-01-20 15:38:19

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New package permutations with initial version 1.0-0
Package: permutations
Type: Package
Title: Permutations of a Finite Set
Version: 1.0-0
LazyData: TRUE
Date: 2016-01-20
Imports: magic,numbers,partitions (>= 1.9-17)
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Description: Manipulates invertible functions from a finite set to itself. Can transform from word form to cycle form and back.
License: GPL-2
NeedsCompilation: no
Packaged: 2016-01-20 08:21:19 UTC; rhankin
Repository: CRAN
Date/Publication: 2016-01-20 10:29:58

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New package xVA with initial version 0.8
Package: xVA
Type: Package
Title: Calculates Credit Risk Valuation Adjustments
Version: 0.8
Date: 2016-01-17
Author: Tasos Grivas
Maintainer: Tasos Grivas <tasos@openriskcalculator.com>
Description: Calculates a number of valuation adjustments including CVA, DVA, FBA, FCA, MVA and KVA. A two-way margin agreement has been implemented. For the KVA calculation three regulatory frameworks are supported: CEM, SA-CCR and IMM. The probability of default is implied through the credit spreads curve. Currently, only IRSwaps are supported.
License: GPL-3
Imports: methods, SACCR
URL: www.openriskcalculator.com
LazyData: TRUE
Collate: 'CSAb.R' 'CalcNGR.R' 'CalcPD.R' 'CalcSimulatedExposure.R' 'CalcVA.R' 'Curve.R' 'GenerateTimeGrid.R' 'HashTable.R' 'Trade.R' 'IRD.R' 'calcCVACapital.R' 'calcDefCapital.R' 'calcEAD.R' 'calcEffectiveMaturity.R' 'calcKVA.R' 'xVACalculator.R' 'xVACalculatorExample.R'
NeedsCompilation: no
Packaged: 2016-01-20 07:53:41 UTC; tasos
Repository: CRAN
Date/Publication: 2016-01-20 09:24:58

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New package tufte with initial version 0.1
Package: tufte
Type: Package
Title: Tufte's Styles for R Markdown Documents
Version: 0.1
Date: 2016-01-20
Authors@R: c( person("Yihui", "Xie", email = "xie@yihui.name", role = c("aut", "cre")), person("JJ", "Allaire", role = "aut"), person("Dave", "Liepmann", role = "ctb", comment = "Tufte CSS in inst/rmarkdown/templates/tufte_html/resources"), person(family = "RStudio, Inc.", role = "cph") )
Maintainer: Yihui Xie <xie@yihui.name>
Description: Provides R Markdown output formats to use Tufte styles for PDF and HTML output.
License: GPL-3
LazyData: TRUE
URL: https://github.com/rstudio/tufte
BugReports: https://github.com/rstudio/tufte/issues
Imports: htmltools, knitr (>= 1.12), rmarkdown
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-01-20 04:52:17 UTC; yihui
Author: Yihui Xie [aut, cre], JJ Allaire [aut], Dave Liepmann [ctb] (Tufte CSS in inst/rmarkdown/templates/tufte_html/resources), RStudio, Inc. [cph]
Repository: CRAN
Date/Publication: 2016-01-20 09:12:36

More information about tufte at CRAN
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