Tue, 30 Sep 2014

New package mdsdt with initial version 1.0
Package: mdsdt
Version: 1.0
Date: 2014-09-27
Title: Functions for Analysis of Data with General Recognition Theory
Author: Robert X.D. Hawkins , Joe Houpt , Noah Silbert , Leslie Blaha , Thomas D. Wickens
Maintainer: Robert X.D. Hawkins
Depends: R (>= 1.8.0), ellipse, mnormt, polycor
Description: This package contains a series of tools associated with General Recognition Theory (Townsend & Ashby, 1986), including Gaussian model fitting of 4x4 and more general confusion matrices, associated plotting and model comparison tools, and tests of marginal response invariance and report independence.
License: GPL (>= 2)
Collate: 'grt-data.R' 'grt_base.R'
Packaged: 2014-09-30 02:49:43 UTC; hawkrobe
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-30 07:50:30

More information about mdsdt at CRAN
Permanent link

Mon, 29 Sep 2014

New package repra with initial version 0.4
Package: repra
Title: Renewable Energy Probability Resource Assessment Tool (REPRA)
Version: 0.4
Date: 2014-09-29
Author: Eduardo Ibanez
Maintainer: Eduardo Ibanez
Description: This package includes methods to calculate resource adequacy metrics in power systems. These methods are based in the notion of loss-of-load probability (LOLP) and include the treatment of conventional and variable renewable generators.
License: MIT + file LICENSE
Depends: R(>= 3.1.0)
Imports: data.table, dplyr, Rcpp, reshape2, ggplot2, assertthat
Suggests: testthat, knitr
LinkingTo: Rcpp (>= 0.11.1)
VignetteBuilder: knitr
LazyData: TRUE
Packaged: 2014-09-29 21:02:43 UTC; eibanez
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-30 00:03:48

More information about repra at CRAN
Permanent link

New package rjstat with initial version 0.2
Package: rjstat
Type: Package
Title: Read and write JSON-stat data sets
Version: 0.2
Date: 2014-08-16
Author: Aaron Schumacher , Håkon Malmedal
Maintainer: Aaron Schumacher
Description: Read and write the JSON-stat format (http://json-stat.org) to and from (lists of) R data frames. Not all features are supported, especially the extensive metadata features of JSON-stat.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/ajschumacher/rjstat
BugReports: https://github.com/ajschumacher/rjstat/issues
Imports: jsonlite (>= 0.9.8), assertthat
Suggests: testthat (>= 0.8), reshape (>= 0.7)
Packaged: 2014-09-29 13:40:28 UTC; hmalmedal
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 23:06:22

More information about rjstat at CRAN
Permanent link

New package gender with initial version 0.4.1
Package: gender
Type: Package
Title: Gender: predict gender from names using historical data
Version: 0.4.1
Authors@R: c(person("Lincoln", "Mullen", role = c("aut", "cre"), email = "lincoln@lincolnmullen.com"), person("Cameron", "Blevins", role = "ctb"), person("Ben", "Schmidt", role = "ctb"))
Description: Encodes gender based on names and dates of birth, using either the Social Security Administration's data set of first names by year of birth or Census Bureau data from 1789 to 1940, both from the United States of America. By using these data sets instead of lists of male and female names, this package is able to more accurately guess the gender of a name, and it is able to report the probability that a name was male or female.
URL: https://github.com/ropensci/gender
Depends: R (>= 3.0.0), utils, stats
Imports: devtools(>= 1.5), dplyr (>= 0.2), httr (>= 0.4), jsonlite (>= 0.9.10)
Suggests: ggplot2, knitr, magrittr, testthat
LazyData: yes
License: MIT + file LICENSE
VignetteBuilder: knitr
BugReports: https://github.com/ropensci/gender/issues
Packaged: 2014-09-29 15:17:37 UTC; lmullen
Author: Lincoln Mullen [aut, cre], Cameron Blevins [ctb], Ben Schmidt [ctb]
Maintainer: Lincoln Mullen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 23:04:09

More information about gender at CRAN
Permanent link

New package atmcmc with initial version 1.0
Package: atmcmc
Type: Package
Title: Automatically Tuned Markov Chain Monte Carlo
Version: 1.0
Date: 2014-09-16
Author: Jinyoung Yang
Maintainer: Jinyoung Yang
Description: Uses adaptive diagnostics to tune and run a random walk Metropolis MCMC algorithm, to converge to a specified target distribution and estimate means of functionals.
License: GPL (>= 2)
Packaged: 2014-09-29 20:01:29 UTC; 1
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 23:00:15

More information about atmcmc at CRAN
Permanent link

New package sprint with initial version 1.0.7
Package: sprint
Title: Simple Parallel R INTerface
Version: 1.0.7
Date: 2014-09-24
Author: University of Edinburgh SPRINT Team
Copyright: University of Edinburgh
Maintainer: Eilidh Troup
Contact: University of Edinburgh SPRINT Team
Depends: R (>= 2.9.2), rlecuyer, ff (>= 2.1-1), randomForest
Suggests: cluster, stringdist, RUnit, Matrix, SparseM, multtest, Biostrings, ShortRead, golubEsets, RankProd
Imports: boot, e1071
SystemRequirements: MPI(>= 2.0)
Description: SPRINT (Simple Parallel R INTerface) is a parallel framework for R. It provides a High Performance Computing (HPC) harness which allows R scripts to run on HPC clusters. SPRINT contains a library of selected R functions that have been parallelized. Functions are named after the original R function with the added prefix 'p', i.e. the parallel version of cor() in SPRINT is called pcor(). Call to the parallel R functions are included directly in standard R scripts. SPRINT contains functions for correlation (pcor), partitioning around medoids (ppam), apply (papply), permutation testing (pmaxT), bootstrapping (pboot), random forest (prandomForest), rank product (pRP) and hamming distance (pstringdistmatrix).
License: GPL (>= 3)
URL: http://www.r-sprint.org
Repository: CRAN
Packaged: 2014-09-29 12:12:34 UTC; eilidhtroup
Date/Publication: 2014-09-29 18:03:00
NeedsCompilation: yes

More information about sprint at CRAN
Permanent link

New package EffectStars with initial version 1.5
Package: EffectStars
Type: Package
Title: Visualization of Categorical Response Models
Version: 1.5
Date: 2014-09-29
Depends: VGAM
Author: Gunther Schauberger
Maintainer: Gunther Schauberger
Description: The package provides functions to visualize regression models with categorical response. The effects of the covariates are plotted with star plots in order to allow for an optical impression of the fitted model.
License: GPL-2
LazyLoad: yes
Packaged: 2014-09-29 13:30:38 UTC; schaubergerg
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 18:02:57

More information about EffectStars at CRAN
Permanent link

New package rFDSN with initial version 0.0.0
Package: rFDSN
Type: Package
Title: Get Seismic Data from the International Federation of Digital Seismograph Networks
Description: This package facilitates searching for and downloading seismic time series in miniSEED format (a minimalist version of the Standard for the Exchange of Earthquake Data) from International Federation of Digital Seismograph Networks repositories. This package can also be used to gather information about seismic networks (stations, channels, locations, etc) and find historical earthquake data (origins, magnitudes, etc).
Version: 0.0.0
Date: 2014-09-28
Authors@R: c(person(given="Daniel C.",family="Bowman", role=c("aut", "cre"), email="daniel.bowman@unc.edu"))
Depends: R (>= 3.1.1), XML (>= 3.98.1.1)
Enhances: RSEIS (>= 3.3.3)
License: GPL (>= 3)
Packaged: 2014-09-29 12:44:12 UTC; bowman
Maintainer: Daniel C. Bowman
Author: Daniel C. Bowman [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 15:10:04

More information about rFDSN at CRAN
Permanent link

New package activity with initial version 1.0
Package: activity
Title: Animal Activity Statistics
Version: 1.0
Date: 24/09/14
Author: Marcus Rowcliffe
Maintainer: Marcus Rowcliffe
Description: Provides functions to fit kernel density functions to animal activity time data; plot activity distributions; quantify overall levels of activity; statistically compare activity metrics through bootstrapping; and evaluate variation in linear variables with time (or other circular variables).
License: GPL-3
Depends: methods
Imports: circular, overlap, pbapply,
LazyData: true
Packaged: 2014-09-29 11:45:26 UTC; Rowcliffe.M
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 15:07:49

More information about activity at CRAN
Permanent link

New package robustDA with initial version 1.0
Package: robustDA
Type: Package
Title: Robust Mixture Discriminant Analysis
Version: 1.0
Date: 2014-09-26
Author: Charles Bouveyron & Stephane Girard
Maintainer: Charles Bouveyron
Depends: MASS, mclust, Rsolnp
Description: Robust mixture discriminant analysis (RMDA, Bouveyron & Girard, 2009) allows to build a robust supervised classifier from learning data with label noise. The idea of the proposed method is to confront an unsupervised modeling of the data with the supervised information carried by the labels of the learning data in order to detect inconsistencies. The method is able afterward to build a robust classifier taking into account the detected inconsistencies into the labels.
License: GPL-2
Packaged: 2014-09-28 17:32:50 UTC; charles
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 07:27:55

More information about robustDA at CRAN
Permanent link

New package blocksdesign with initial version 1.0
Package: blocksdesign
Type: Package
Title: Nested block designs for unstructured treatments
Version: 1.0
Date: 2014-09-16
Author: R. N. Edmondson
Maintainer: Rodney Edmondson
Description: Nested block designs for unstructured treatment sets where blocks can be repeatedly nested and treatments can have different levels of replication. Blocks strata are optimized hierarchically with each set of nested blocks optimized within the levels of the preceding set. Block sizes are equal if the number of blocks exactly divides the number of plots, otherwise they differ by at most one plot. The design output is a data table giving a randomised allocation of treatments to blocks together with a plan table showing treatments in blocks and a set of blocks-by-treatments incidence matrices, one for each blocks stratum.
License: GPL (>= 2)
URL: http://www.expdesigns.co.uk
Suggests: knitr
VignetteBuilder: knitr
Imports: crossdes
Packaged: 2014-09-28 18:51:17 UTC; rne
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-29 07:23:52

More information about blocksdesign at CRAN
Permanent link

Sun, 28 Sep 2014

New package neural with initial version 1.4.2.2
Package: neural
Version: 1.4.2.2
Title: Neural Networks
Author: Adam Nagy
Maintainer: Billy Aung Myint
Description: RBF and MLP neural networks with graphical user interface
License: GPL (>= 2)
Repository: CRAN
Packaged: 2014-09-28 13:32:07 UTC; billy
NeedsCompilation: no
Date/Publication: 2014-09-28 18:26:46

More information about neural at CRAN
Permanent link

New package ecoretriever with initial version 0.1
Package: ecoretriever
Title: R Interface to the EcoData Retriever
Description: Provides an R interface to the EcoData Retriever (http://ecodataretriever.org/) via the EcoData Retriever's command line interface. The EcoData Retriever automates the tasks of finding, downloading, and cleaning ecological datasets, and then stores them in a local database.
Version: 0.1
Date: 2014-09-07
Authors@R: c(person("Daniel", "McGlinn", role = c("aut", "cre"), email = "danmcglinn@gmail.com"), person("Ethan", "White", role = "aut", email = "ethan@weecology.org"))
BugReports: https://github.com/ropensci/ecoretriever/issues
URL: https://github.com/ropensci/ecoretriever/
Depends: R (>= 3.0.0)
SystemRequirements: EcoData Retriever (>= 1.6)
License: MIT + file LICENSE
LazyData: true
Packaged: 2014-09-28 14:46:23 UTC; danmcglinn
Author: Daniel McGlinn [aut, cre], Ethan White [aut]
Maintainer: Daniel McGlinn
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-28 18:18:03

More information about ecoretriever at CRAN
Permanent link

Sat, 27 Sep 2014

New package MetFns with initial version 1.0
Package: MetFns
Type: Package
Title: Analysis of Visual Meteor Data
Version: 1.0
Date: 2014-09-16
Author: Kristina Veljkovic
Maintainer: Kristina Veljkovic
Description: Functions for selection of visual meteor data, calculations of Zenithal Hourly Rate (ZHR) and population index, graphics of ZHR and magnitude distribution
License: GPL-2 | GPL-3
Depends: astroFns, plotrix, graphics, R (>= 2.10)
Packaged: 2014-09-27 12:44:17 UTC; Kiki Moreau
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-27 16:04:27

More information about MetFns at CRAN
Permanent link

Fri, 26 Sep 2014

New package oc with initial version 0.95
Package: oc
Version: 0.95
Date: 2014-09-25
Title: OC Roll Call Analysis Software.
Author: Keith Poole , Jeffrey Lewis , James Lo and Royce Carroll
Maintainer: James Lo
Depends: R (>= 2.3.1), pscl (>= 0.59)
Description: Estimates Optimal Classification scores from roll call votes supplied though a 'rollcall' object from package 'pscl'.
License: GPL-2
Repository: CRAN
Date/Publication: 2014-09-26 19:05:36
Packaged: 2014-09-25 23:15:49 UTC; jameslo
NeedsCompilation: yes

More information about oc at CRAN
Permanent link

New package Guerry with initial version 1.6-1
Package: Guerry
Type: Package
Title: Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
Version: 1.6-1
Date: 2014-09-26
Authors@R: c(person(given = "Michael", family = "Friendly", role=c("aut", "cre"), email="friendly@yorku.ca"), person(given = "Stephane", family = "Dray", role="aut"))
Author: Michael Friendly [aut, cre], Stephane Dray [aut]
Maintainer: Michael Friendly
Encoding: latin1
Depends: R (>= 2.10)
Suggests: sp, shapefiles, spdep, ade4, maptools
Description: This package comprises maps of France in 1830, multivariate data from A.-M. Guerry and others, and statistical and graphic methods related to Guerry's "Moral Statistics of France". The goal is to facilitate the exploration and development of statistical and graphic methods for multivariate data in a geo-spatial context of historical interest.
License: GPL
URL: http://guerry.r-forge.r-project.org/
LazyLoad: yes
LazyData: yes
Repository: CRAN
Repository/R-Forge/Project: guerry
Repository/R-Forge/Revision: 25
Repository/R-Forge/DateTimeStamp: 2014-09-26 12:11:25
Date/Publication: 2014-09-26 19:03:40
Packaged: 2014-09-26 12:50:09 UTC; rforge
NeedsCompilation: no

More information about Guerry at CRAN
Permanent link

New package GenWin with initial version 0.1
Package: GenWin
Title: Spline Based Window Boundaries for Genomic Analyses
Version: 0.1
Date: 9/25/2014
Author: Timothy M. Beissinger
Maintainer: Timothy M. Beissinger
Description: Defines window or bin boundaries for the analysis of genomic data. Boundaries are based on the inflection points of a cubic smoothing spline fitted to the raw data. Along with defining boundaries, a technique to evaluate results obtained from unequally-sized windows is provided. Applications are particularly pertinent for, though not limited to, genome scans for selection based on variability between populations (e.g. using Wright's fixations index, Fst, which measures variability in subpopulations relative to the total population).
Depends: R (>= 3.1.1)
Imports: pspline
License: MIT + file LICENSE
LazyData: true
Packaged: 2014-09-26 13:33:03 UTC; beissinger
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-26 16:51:09

More information about GenWin at CRAN
Permanent link

New package ADDT with initial version 1.0
Package: ADDT
Type: Package
Title: A Package for Analysis of Accelerated Destructive Degradation Test Data
Version: 1.0
Date: 2014-09-23
Author: Yili Hong, Yimeng Xie, and Caleb King
Maintainer: Yili Hong
Description: Accelerated destructive degradation tests (ADDT) are often used to collect necessary data for assessing the long-term properties of polymeric materials. Based on the collected data, a thermal index (TI) is estimated. The TI can be useful for material rating and comparison. This package performs the least squares (LS) and maximum likelihood (ML) procedures for estimating TI for polymeric materials. The LS approach is a two-step approach that is currently used in industrial standards, while the ML procedure is widely used in the statistical literature. The ML approach allows one to do statistical inference such as quantifying uncertainties in estimation, hypothesis testing, and predictions. Two publicly available datasets are provided to allow users to experiment and practice with the functions.
License: GPL-2
Packaged: 2014-09-25 23:57:12 UTC; Yili Hong
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-26 07:55:35

More information about ADDT at CRAN
Permanent link

Thu, 25 Sep 2014

New package virtualspecies with initial version 1.0
Package: virtualspecies
Type: Package
Title: Generation of Virtual Species Distributions
Version: 1.0
Date: 2014-09-25
Author: Boris Leroy with help from C. N. Meynard, C. Bellard & F. Courchamp
Maintainer: Boris Leroy
Description: Provides a framework for generating virtual species distributions, a procedure increasingly used in ecology to improve species distribution models. This package integrates the existing methodological approaches with the objective of generating virtual species distributions with increased ecological realism.
License: GPL (>= 2.0)
Depends: raster
Imports: ade4, dismo, rworldmap
URL: http://borisleroy.com/virtualspecies
Packaged: 2014-09-25 17:20:12 UTC; Farewell
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-25 23:05:19

More information about virtualspecies at CRAN
Permanent link

New package ivprobit with initial version 1.0
Package: ivprobit
Type: Package
Title: Instrumental variables probit model
Version: 1.0
Date: 2014-09-18
Author: Zaghdoudi Taha
Maintainer: Zaghdoudi Taha
Description: ivprobit fit an Instrumental variables probit model using the generalized least squares estimator
License: Artistic-2.0
Packaged: 2014-09-25 15:07:02 UTC; Taha
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-25 22:37:05

More information about ivprobit at CRAN
Permanent link

New package causaleffect with initial version 1.0
Package: causaleffect
Version: 1.0
Date: 2014-09-17
Title: Deriving Expressions of Joint Interventional Distributions in Causal Models
Author: Santtu Tikka
Maintainer: Santtu Tikka
Imports: igraph, XML
Description: An implementation of the complete identification algorithm constructed by Ilya Shpitser and Judea Pearl (2006) for deriving expressions of joint interventional distributions in causal models, which contain unobserved variables and induce directed acyclic graphs.
License: GPL-2
Packaged: 2014-09-25 16:37:49 UTC; Santtu
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-25 22:42:50

More information about causaleffect at CRAN
Permanent link

New package SPREDA with initial version 1.0
Package: SPREDA
Type: Package
Title: Statistical Package for Reliability Data Analysis
Version: 1.0
Date: 2014-09-20
Author: Yili Hong, Yimeng Xie, and Zhibing Xu
Maintainer: Yili Hong
Depends: survival, nlme
Description: The Statistical Package for REliability Data Analysis (SPREDA) implements recently-developed statistical methods for the analysis of reliability data. Modern technological developments, such as sensors and smart chips, allow us to dynamically track product/system usage as well as other environmental variables, such as temperature and humidity. We refer to these variables as dynamic covariates. The package contains functions for the analysis of time-to-event data with dynamic covariates and degradation data with dynamic covariates. The package also contains functions that can be used for analyzing time-to-event data with right censoring, and with left truncation and right censoring. Financial support from NSF and DuPont are acknowledged.
License: GPL-2
Packaged: 2014-09-25 12:50:27 UTC; Yili Hong
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-25 17:44:48

More information about SPREDA at CRAN
Permanent link

Wed, 24 Sep 2014

New package rentrez with initial version 0.3.1
Package: rentrez
Version: 0.3.1
Date: 2014-05-20
Title: Entrez in R
Authors@R: c(person("David", "Winter", role=c("aut", "cre"), email = "david.winter@gmail.com"), person("Scott", "Chamberlain", role="ctb", email = "myrmecocystus@gmail.com"))
Depends: R (>= 2.6.0), XML
Imports: httr
Suggests: testthat, knitr
Description: Rentrez provides an R interact to the NCBI's EUtils API allowing users to search databases like genbank and pubmed, process the resulting files and pull data into their R sessions.
VignetteBuilder: knitr
License: MIT + file LICENSE
Packaged: 2014-09-23 14:49:14 UTC; david
Author: David Winter [aut, cre], Scott Chamberlain [ctb]
Maintainer: David Winter
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-24 18:13:32

More information about rentrez at CRAN
Permanent link

New package kofnGA with initial version 1.0
Package: kofnGA
Type: Package
Title: A genetic algorithm for fixed-size subset selection
Version: 1.0
Date: 2014-09-23
Author: Mark A. Wolters
Maintainer: Mark A. Wolters
Description: Function kofnGA uses a genetic algorithm to choose a subset of a fixed size k from the integers 1:n, such that a user-supplied objective function is minimized at that subset. The selection step is done by tournament selection based on ranks, and elitism may be used to retain a portion of the best solutions from one generation to the next.
License: GPL-2
Packaged: 2014-09-24 07:18:32 UTC; Mark
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-24 15:36:36

More information about kofnGA at CRAN
Permanent link

New package Compind with initial version 1.0
Package: Compind
Type: Package
Title: Composite indicators functions
Version: 1.0
Date: September 2014
Author: Francesco Vidoli, Elisa Fusco
Maintainer: Francesco Vidoli
Description: Compind package contains several functions to enhance approaches to the Composite Indicators (http://stats.oecd.org/glossary/detail.asp?ID=6278}, https://composite-indicators.jrc.ec.europa.eu/) methods, focusing, in particular, on the normalisation and weighting-aggregation steps.
Depends: Benchmarking, psych, boot
Imports: Hmisc, MASS, GPArotation, lpSolve, nonparaeff
License: GPL-3
Packaged: 2014-09-23 18:41:26 UTC; fra
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-24 15:34:14

More information about Compind at CRAN
Permanent link

New package ASMap with initial version 0.3
Package: ASMap
Type: Package
Title: Linkage map construction using the MSTmap algorithm
Version: 0.3
Date: 2014-09-24
Author: Julian Taylor , David Butler .
Maintainer: Julian Taylor
Depends: R (>= 2.0.0), qtl, gtools, fields, lattice
Description: Functions for (A)ccurate and (S)peedy linkage map construction, manipulation and diagnosis of double haploid, backcross and and RIL R/qtl objects. This includes extremely fast linkage map clustering and optimal marker ordering using MSTmap (see Wu et al.,2008).
License: GPL (>= 2)
Packaged: 2014-09-24 09:30:39 UTC; julian.taylor
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-24 12:12:10

More information about ASMap at CRAN
Permanent link

New package SimplicialCubature with initial version 1.0
Package: SimplicialCubature
Type: Package
Title: Numerical integration of functions over simplices
Version: 1.0
Date: 2014-09-09
Author: John P. Nolan, with parts based on code by Alan Genz
Maintainer: John P. Nolan
Depends: R (>= 3.0.0)
Description: This package provides methods to integrate functions over m-dimensional simplices in n-dimensional Euclidean space. There are exact methods for polynomials and adaptive methods for integrating an arbitrary function.
License: GPL (>= 2)
Packaged: 2014-09-24 02:00:51 UTC; jpnolan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-24 06:46:00

More information about SimplicialCubature at CRAN
Permanent link

New package ordinalgmifs with initial version 1.0.0
Package: ordinalgmifs
Type: Package
Title: Ordinal Regression for High-dimensional Data
Version: 1.0.0
Date: 2014-09-23
Author: Kellie J. Archer, Jiayi Hou, Qing Zhou, Kyle Ferber, John G. Layne, Amanda Gentry
Maintainer: Kellie J. Archer
Description: This package provides a function for fitting cumulative link, adjacent category, forward and backward continuation ratio, and stereotype ordinal response models when the number of parameters exceeds the sample size, using the the generalized monotone incremental forward stagewise method.
License: GPL (>= 2)
Depends: R (>= 2.10)
Suggests: Biobase
BuildResaveData: best
NeedsCompilation: yes
LazyData: true
Packaged: 2014-09-23 23:33:46 UTC; kjarcher
Repository: CRAN
Date/Publication: 2014-09-24 06:41:50

More information about ordinalgmifs at CRAN
Permanent link

Tue, 23 Sep 2014

New package NHMM with initial version 3.3
Package: NHMM
Type: Package
Title: Bayesian NHMM modeling (multiple time series)
Version: 3.3
Date: 2014-08-15
Author: Tracy Holsclaw
Maintainer: Tracy Holsclaw
Description: Bayesian NHMM modeling for multiple time series. The emission distribution can be mixtures of Gammas, Poissons, Normals and zero inflation is possible.
License: GPL (>= 3)
Imports: Rcpp (>= 0.11.0)
LinkingTo: Rcpp
Depends: BayesLogit, msm, MCMCpack, MASS
Packaged: 2014-09-23 19:36:33 UTC; iamrandom
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-24 00:55:11

More information about NHMM at CRAN
Permanent link

New package crayon with initial version 1.0.0
Package: crayon
Title: Colored Terminal Output
Version: 1.0.0
Authors@R: "Gabor Csardi [aut, cre]"
Description: Crayon adds support for colored terminal output on terminals that support ANSI color and highlight codes. ANSI color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily. This package was inspired by the chalk JavaScript project.
License: MIT + file LICENSE
LazyData: true
URL: https://github.com/gaborcsardi/crayon
BugReports: https://github.com/gaborcsardi/crayon/issues
Collate: 'utils.r' 'string.r' 'crayon-package.r' 'has_ansi.r' 'has_color.r' 'styles.r' 'machinery.r' 'print.r' 'style-var.r'
Suggests: testthat
Packaged: 2014-09-23 19:11:01 UTC; gaborcsardi
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-23 22:19:16

More information about crayon at CRAN
Permanent link

New package RJSDMX with initial version 1.1
Package: RJSDMX
Version: 1.1
Title: R interface to SDMX Web Services
Author: Attilio Mattiocco, Diana Nicoletti, Gianpaolo Lopez, Banca d'Italia
Maintainer: Attilio Mattiocco
Description: This package provides functions that can be used to retrieve data and metadata from SDMX compliant data providers.
Depends: R (>= 2.12.0), rJava (>= 0.8-8), zoo (>= 1.6-4)
SystemRequirements: Java (>= 1.6)
License: EUPL
URL: https://github.com/amattioc/SDMX/
Copyright: Banca d'Italia
Packaged: 2014-09-23 12:15:01 UTC; e922480
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-23 15:15:52

More information about RJSDMX at CRAN
Permanent link

New package deming with initial version 1.0-1
Title: Deming, Thiel-Sen and Passing-Bablock Regression
Maintainer: Terry Therneau
Description: Generalized Deming regression, Theil-Sen regression and Passing-Bablock regression functions.
Imports: boot
Priority: optional
Package: deming
Version: 1.0-1
Date: 2013-02-18
LazyData: Yes
ByteCompile: Yes
Author: Terry Therneau
License: LGPL (>= 2)
Packaged: 2014-09-23 12:58:26 UTC; therneau
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-23 15:15:49

More information about deming at CRAN
Permanent link

New package wnominate with initial version 0.99
Package: wnominate
Version: 0.99
Date: 2014-09-19
Title: WNOMINATE Roll Call Analysis Software.
Author: Keith Poole , Jeffrey Lewis , James Lo and Royce Carroll
Maintainer: James Lo
Depends: R (>= 2.3.1), pscl (>= 0.59)
Description: Estimates Poole and Rosenthal W-NOMINATE scores from roll call votes supplied though a 'rollcall' object from package 'pscl'.
License: GPL-2
Repository: CRAN
Date/Publication: 2014-09-23 05:22:19
Packaged: 2014-09-19 23:42:59 UTC; jameslo
NeedsCompilation: yes

More information about wnominate at CRAN
Permanent link

Mon, 22 Sep 2014

New package pingr with initial version 1.0.0
Package: pingr
Title: Check If a Remote Computer is Up
Version: 1.0.0
Authors@R: "Gabor Csardi [aut,cre]"
Description: Check if a remote computer is up. It can either just call the system ping command, or check a specified TCP port.
License: MIT + file LICENSE
LazyData: true
URL: https://github.com/gaborcsardi/pingr
BugReports: https://github.com/gaborcsardi/pingr/issues
Suggests: testthat
Packaged: 2014-09-22 18:46:33 UTC; gaborcsardi
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-22 21:26:59

More information about pingr at CRAN
Permanent link

New package mpath with initial version 0.1-14
Package: mpath
Title: Regularized Linear Models
Version: 0.1-14
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
Imports: MASS,glmnet,pscl,numDeriv
Depends: methods
License: GPL-2
Packaged: 2014-09-22 17:32:25.925 UTC; zhu
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-22 21:27:03

More information about mpath at CRAN
Permanent link

New package GENLIB with initial version 1.0
Package: GENLIB
Type: Package
Title: Genealogical Data Analysis
Version: 1.0
Date: 2012-04-04
Authors@R: c( person("Louis", "Houde", role="aut"), person("Jean-Francois", "Lefebvre", role="aut", email="mroygagn@uottawa.ca"), person("Valery", "Roy-Lagace", role="aut"), person("Sebastien", "Lemieux", role="aut"), person("Michael J.", "Fromberger", role="ctb"), person("Marie-Helene", "Roy-Gagnon", role="cre", email="jf_lef@yahoo.ca"))
Description: Genealogical data analysis including descriptive statistics (e.g., kinship and inbreeding coefficients) and gene-dropping simulations.
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 3.0), Rcpp (>= 0.9.10)
Imports: kinship2, methods, bootstrap, Matrix, lattice, quadprog, foreach, parallel, doParallel
LinkingTo: Rcpp
Packaged: 2014-09-22 14:22:08 UTC; sainte-justine\lefjea01
Author: Louis Houde [aut], Jean-Francois Lefebvre [aut], Valery Roy-Lagace [aut], Sebastien Lemieux [aut], Michael J. Fromberger [ctb], Marie-Helene Roy-Gagnon [cre]
Maintainer: Marie-Helene Roy-Gagnon
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-22 18:46:51

More information about GENLIB at CRAN
Permanent link

New package documair with initial version 0.6-0
Package: documair
Version: 0.6-0
Date: 2014-09-06
Type: Package
Title: Automatic Documentation for R packages
Author: Jean-Baptiste Denis , Regis Pouillot , Kien Kieu
Maintainer: Jean-Baptiste Denis
Description: Production of R packages from tagged comments introduced within the code and a minimum of additional documentation files.
License: GPL (>= 2.15)
Packaged: 2014-09-17 09:35:38 UTC; rforge
Repository: CRAN
Repository/R-Forge/Project: riskassessment
Repository/R-Forge/Revision: 283
Repository/R-Forge/DateTimeStamp: 2014-09-17 09:16:39
Date/Publication: 2014-09-22 17:22:20
NeedsCompilation: yes

More information about documair at CRAN
Permanent link

New package fAssets with initial version 3011.82
Package: fAssets
Title: Rmetrics - Analysing and Modelling Financial Assets
Date: 2014-09-17
Version: 3011.82
Author: Rmetrics Core Team, Diethelm Wuertz [aut], Tobias Setz [cre] Yohan Chalabi [ctb]
Maintainer: Tobias Setz
Description: Environment for teaching "Financial Engineering and Computational Finance".
Depends: R (>= 2.15.1), timeDate, timeSeries, fBasics
Imports: fMultivar, robustbase, MASS, sn
Suggests: methods, mnormt, ecodist, mvnormtest, energy, RUnit
Note: SEVERAL PARTS ARE STILL PRELIMINARY AND MAY BE CHANGED IN THE FUTURE. THIS TYPICALLY INCLUDES FUNCTION AND ARGUMENT NAMES, AS WELL AS DEFAULTS FOR ARGUMENTS AND RETURN VALUES.
LazyData: yes
License: GPL (>= 2)
URL: https://www.rmetrics.org
Packaged: 2014-09-22 10:28:15 UTC; Tobi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-22 14:10:47

More information about fAssets at CRAN
Permanent link

New package mpmi with initial version 0.41
Package: mpmi
Type: Package
Title: Mixed-pair mutual information estimators
Version: 0.41
Date: 2014-22-09
Author: Chris Pardy
Maintainer: Chris Pardy
Description: Uses a kernel smoothing approach to calculate Mutual Information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Uses a nonparametric bias correction giving Bias Corrected Mutual Information (BCMI). Implemented efficiently in Fortran 95 with OpenMP and suited to large genomic datasets.
License: GPL-3
URL: http://r-forge.r-project.org/projects/mpmi/
Depends: KernSmooth
Packaged: 2014-09-22 03:35:34 UTC; cp
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-22 07:59:19

More information about mpmi at CRAN
Permanent link

New package IBrokers with initial version 0.9-12
Package: IBrokers
Type: Package
Title: R API to Interactive Brokers Trader Workstation
Version: 0.9-12
Date: 2014-09-22
Depends: xts, zoo
Author: Jeffrey A. Ryan
Maintainer: Joshua M. Ulrich
Description: Provides native R access to Interactive Brokers Trader Workstation API.
License: GPL-3
Packaged: 2014-09-22 02:44:36 UTC; josh
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-22 07:59:21

More information about IBrokers at CRAN
Permanent link

Sun, 21 Sep 2014

New package RcmdrPlugin.MA with initial version 0.0-2
Package: RcmdrPlugin.MA
Type: Package
Title: Graphical User Interface for Conducting Meta-Analyses in R
Version: 0.0-2
Date: 2014-09-21
Author: A. C. Del Re
Maintainer: A. C. Del Re
Description: Easy to use interface for conducting meta-analysis in R. This package is an Rcmdr-plugin, which allows the user to conduct analyses in a menu-driven, graphical user interface environment (e.g., CMA, SPSS). It uses recommended procedures as described in The Handbook of Research Synthesis and Meta-Analysis (Cooper, Hedges, & Valentine, 2009).
Depends: R (>= 2.15)
Imports: Rcmdr, MAd, metafor
Suggests: knitr, rmarkdown, compute.es, ggplot2, gridExtra, scales
License: GPL-2
RcmdrModels: mareg, macat, rma
URL: http://acdelre.weebly.com/
Packaged: 2014-09-20 22:33:08 UTC; acd
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-21 07:43:42

More information about RcmdrPlugin.MA at CRAN
Permanent link

New package CGP with initial version 2.0-2
Package: CGP
Type: Package
Title: Composite Gaussian process models
Version: 2.0-2
Date: 2014-09-20
Author: Shan Ba and V. Roshan Joseph
Maintainer: Shan Ba
Description: Fit composite Gaussian process (CGP) models as described in Ba and Joseph (2012) "Composite Gaussian Process Models for Emulating Expensive Functions", Annals of Applied Statistics. The CGP model is capable of approximating complex surfaces that are not second-order stationary. Important functions in this package are CGP, print.CGP, summary.CGP, predict.CGP and plotCGP.
License: LGPL-2.1
Packaged: 2014-09-21 04:18:33 UTC; Lenovo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-21 07:43:39

More information about CGP at CRAN
Permanent link

Sat, 20 Sep 2014

New package qdapRegex with initial version 0.1.1
Package: qdapRegex
Type: Package
Title: Regular Expression Removal, Extraction, & Replacement Tools
Version: 0.1.1
Date: 2014-04-19
Authors@R: c(person("Jason", "Gray", "", role = "ctb"), person("Tyler", "Rinker", email = "tyler.rinker@gmail.com", role = c("aut", "cre")))
Maintainer: Tyler Rinker
Depends: R (>= 3.0.0)
Imports: stringi
Suggests: testthat
LazyData: TRUE
Description: A collection of regex tools associated with the qdap package that may be useful outside of the context of discourse analysis. Tools include removal/extraction/replacement of abbreviations, dates, dollar amounts, email addresses, hash tags, numbers, percentages, person tags, phone numbers, times, and zip codes.
License: GPL-2
URL: http://trinker.github.com/qdapRegex/
BugReports: http://github.com/trinker/qdapRegex/issues
Collate: 'S.R' 'utils.R' 'rm_default.R' 'escape.R' 'grab.R' 'pastex.R' 'qdapRegex-package.R' 'rm_.R' 'rm_abbreviation.R' 'rm_between.R' 'rm_bracket.R' 'rm_caps.R' 'rm_citation.R' 'rm_city_state.R' 'rm_city_state_zip.R' 'rm_date.R' 'rm_dollar.R' 'rm_email.R' 'rm_emoticon.R' 'rm_endmark.R' 'rm_hash.R' 'rm_nchar_words.R' 'rm_non_ascii.R' 'rm_number.R' 'rm_percent.R' 'rm_phone.R' 'rm_tag.R' 'rm_time.R' 'rm_title_name.R' 'rm_url.R' 'rm_white.R' 'rm_zip.R' 'validate.R'
Packaged: 2014-09-20 20:12:24 UTC; trinker
Author: Jason Gray [ctb], Tyler Rinker [aut, cre]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 23:38:47

More information about qdapRegex at CRAN
Permanent link

New package audited with initial version 1.9
Package: audited
Type: Package
Title: Automatic Tracing and Display of Changes to Row Count
Version: 1.9
Date: 2014-09-18
Author: Tim Bergsma
Maintainer: Tim Bergsma
Imports: igraph, metrumrg, methods
Suggests: xlsx, rJava
Description: Classifies a data.frame such that row deletions and additions are tracked. A mechanism exists to give formal names to the row subsets that are coming or going. These names are used to populate a directed graph giving an account of all the transactions contributing to the state of the data.frame. The generic as.audited() has a method for keyed data.frames that creates an audited data.frame. Methods exist that track row count changes for the generics: Ops, !, ^, |, [, subset, head, tail, unique, cast, melt, aggregate, and merge. audit() extracts the transaction table from the audited object, while write.audit() and read.audit() control exchange with the file system. An audit method for as.igraph() creates a graph object that can be displayed with the corresponding plot method. Use options(audit= ) to provide an extra level of classification. Use options(artifact=TRUE) and as.xlsx() to save dropped records to file.
License: GPL
Packaged: 2014-09-20 16:05:24 UTC; timb
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 22:03:15

More information about audited at CRAN
Permanent link

New package vdmR with initial version 0.1.0
Package: vdmR
Type: Package
Title: Visual Data Mining Tools for R
Version: 0.1.0
Date: 2014-08-14
Author: Tomokazu Fujino
Maintainer: Tomokazu Fujino
Description: This provides web based visual data mining tools by adding interactive functions to ggplot2 graphics. Brushing and linking between the multiple plots is one of the main feature of this package. Currently scatter plot, histogram, parallel coordinate plot and choropleth map are supported.
VignetteBuilder: knitr
Depends: R (>= 3.0.0)
Imports: ggplot2, plyr, maptools, gridSVG, grid, rjson, GGally, Rook, dplyr
Suggests: testthat, rgeos, knitr
License: GPL-2
Packaged: 2014-09-20 07:26:23 UTC; fujino
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 12:14:16

More information about vdmR at CRAN
Permanent link

New package RRreg with initial version 0.1.3
Package: RRreg
Type: Package
Title: Correlation and Regression Analyses of Randomized Response Designs
Authors@R: c(person( given="Daniel W.",family="Heck",email="dheck@mail.uni-mannheim.de", role=c("aut","cre")), person(given="Morten",family="Moshagen",email="moshagen@uni-mannheim.de", rol=c("aut")))
Author: Daniel W. Heck [aut, cre], Morten Moshagen [aut]
Maintainer: Daniel W. Heck
Depends: R (>= 3.0.0)
Imports: parallel, doParallel, foreach
Suggests: knitr
Description: RRreg provides univariate and multivariate methods to analyze randomized response (RR) survey designs (e.g., Warner, S. L. (1965). Randomized response: A survey technique for eliminating evasive answer bias. Journal of the American Statistical Association, 60, 63–69). Besides univariate estimates of true proportions, RR variables can be used for correlations, as dependent variable in a logistic regression and as predictors in a linear regression. For simulation and bootstrap purposes, RR data can be generated according to several models.
License: GPL-2
Encoding: UTF-8
LazyLoad: yes
URL: https://dl.dropboxusercontent.com/u/21456540/RRreg/index.html
VignetteBuilder: knitr
Version: 0.1.3
Date: 2014-09-20
Collate: 'RRcheck.R' 'RRcor.models.R' 'RRcor.R' 'RRgen.R' 'RRlin.getPW.R' 'RRlin.ll.R' 'RRlin.R' 'RRlog.CDM.R' 'RRlog.FR.R' 'RRlog.Kuk.R' 'RRlog.Mangat.R' 'RRlog.R' 'RRlog.SLD.R' 'RRlog.UQTknown.R' 'RRlog.UQTunknown.R' 'RRlog.Warner.R' 'RRreg-package.R' 'RRsimu.R' 'RRuni.models.R' 'RRuni.R'
Packaged: 2014-09-20 09:53:03 UTC; Daniel
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 12:14:12

More information about RRreg at CRAN
Permanent link

New package REDCapR with initial version 0.4-28
Package: REDCapR
Title: Interaction between R and REDCap
Description: Encapsulates functions to streamline calls from R
Version: 0.4-28
Date: 2014-09-19
Authors@R: c(person("Will", "Beasley", role = c("aut", "cre"), email = "wibeasley@hotmail.com"), person("David", "Bard", role = "ctb"), person("Thomas", "Wilson", role = "ctb"), person(given="John J", family="Aponte", role = "ctb"), person("Rollie", "Parrish", role = "ctb"))
Author: Will Beasley [aut, cre], David Bard [ctb], Thomas Wilson [ctb], John J Aponte [ctb], Rollie Parrish [ctb]
Maintainer: Will Beasley
URL: http://ouhsc.edu/bbmc/
Depends: R(>= 3.0.0), stats
Imports: httr, plyr, stringr
Suggests: devtools, knitr, methods, RODBC, testit, testthat
License: GPL-3
LazyData: TRUE
VignetteBuilder: knitr
Repository: CRAN
Repository/R-Forge/Project: redcapr
Repository/R-Forge/Revision: 23
Repository/R-Forge/DateTimeStamp: 2014-09-19 15:03:52
Date/Publication: 2014-09-20 07:19:22
Packaged: 2014-09-19 15:50:29 UTC; rforge
NeedsCompilation: no

More information about REDCapR at CRAN
Permanent link

New package OrdLogReg with initial version 1.1
Package: OrdLogReg
Type: Package
Title: Ordinal Logic Regression
Version: 1.1
Date: 2014-09-05
Author: Bethany Wolf
Maintainer: Bethany Wolf
Depends: LogicReg
Description: Method for develops a classification model for ordinal responses based on logic regression.
License: GPL-2
Packaged: 2014-09-19 16:02:04 UTC; wolfb
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 07:18:07

More information about OrdLogReg at CRAN
Permanent link

New package MST with initial version 1.0
Package: MST
Type: Package
Title: Multivariate Survival Trees
Version: 1.0
Date: 2014-09-19
Author: Xiaogang Su, Peter Calhoun, and Juanjuan Fan
Maintainer: Peter Calhoun
Description: Constructs trees for multivariate survival data using marginal and frailty models
License: GPL-2
Imports: survival, MASS
Packaged: 2014-09-19 22:28:18 UTC; pcalhoun
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-20 07:14:13

More information about MST at CRAN
Permanent link

Fri, 19 Sep 2014

New package opentraj with initial version 1.0
Package: opentraj
Type: Package
Title: Tools for Creating and Analysing Air Trajectory Data
Version: 1.0
Date: 2014-08-22
Author: Thalles Santos Silva
Maintainer: Thalles Silva
Description: opentraj uses the Hybrid Single Particle Lagrangian Integrated Trajectory Model (HYSPLIT) for computing simple air parcel trajectories. The functions in this package allow users to run HYSPLIT for trajectory calculations, as well as get its results, directly from R without using any GUI interface.
License: GPL-2
Imports: plyr, maptools, openair, raster, rgdal, reshape, doParallel, parallel, foreach, sp
LazyData: yes
Packaged: 2014-09-19 13:19:58 UTC; thalles
Depends: R (>= 2.10)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 17:35:43

More information about opentraj at CRAN
Permanent link

New package BOIN with initial version 1.0
Package: BOIN
Type: Package
Title: Bayesian Optimal Interval Design for Phase I Clinical Trials
Version: 1.0
Date: 2014-08-14
Author: Ying Yuan and Suyu Liu
Maintainer: Ying Yuan
Description: The Bayesian optimal interval (BOIN) design is a novel phase I clinical trial design for finding the maximum tolerated dose (MTD). The BOIN design is motivated by the top priority and concern of clinicians when testing a new drug, which is to effectively treat patients and minimize the chance of exposing them to subtherapeutic or overly toxic doses. The prominent advantage of the BOIN design is that it achieves simplicity and superior performance at the same time. The BOIN design is algorithm-based and can be implemented in a simple way similar to the traditional 3+3 design. The BOIN design yields average performance comparable to the continual reassessment method (CRM, one of the best model-based design) in terms of selecting the MTD, but has a substantially lower risk of assigning patients to subtherapeutic or overly toxic doses.
License: GPL-2
Packaged: 2014-09-19 14:36:20 UTC; yingyuan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 17:28:46

More information about BOIN at CRAN
Permanent link

New package nat.nblast with initial version 1.5
Package: nat.nblast
Type: Package
Title: NeuroAnatomy Toolbox (nat) Extension for Assessing Neuron Similarity and Clustering
Version: 1.5
Date: 2014-09-18
Author: Greg Jefferis and James Manton
Maintainer: James Manton
Description: Extends package nat (NeuroAnatomy Toolbox) by providing a collection of NBLAST-related functions.
Depends: R (>= 2.15.1), rgl, methods, nat (>= 1.5.12)
Imports: nabor, dendroextras, plyr, spam
Suggests: bigmemory, ff, testthat
License: GPL-3
LazyData: yes
Packaged: 2014-09-19 11:20:01 UTC; jefferis
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 14:57:33

More information about nat.nblast at CRAN
Permanent link

New package multipleNCC with initial version 1.0
Package: multipleNCC
Type: Package
Title: Weighted Cox-regression for nested case-control data
Version: 1.0
Date: 2014-08-28
Author: Nathalie C. Stoer, Sven Ove Samuelsen
Maintainer: Nathalie C. Stoer
Description: This package fit Cox proportional hazard models with a weighted partial likelihood. It handles one or multiple endpoints, additional matching and makes it possible to reuse controls for other endpoints.
Depends: survival, gam
License: GPL-2
Packaged: 2014-09-19 12:44:29 UTC; Nathalie
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 15:06:25

More information about multipleNCC at CRAN
Permanent link

New package confidence with initial version 1.0-0
Package: confidence
Type: Package
Title: Confidence Estimation of Environmental State Classifications
Description: Functions for estimating and reporting multiyear averages and corresponding confidence intervals and distributions. A potential use case is reporting the chemical and ecological status of surface waters according to the European Water Framework Directive.
Version: 1.0-0
Date: 2014-09-18
Authors@R: c(person(given = c("Willem", "M.", "G.", "M."), family = "van Loon", email = "willem.van.loon@rws.nl", role = c("aut", "cph")), person(given = c("Dennis", "J.", "J."), family = "Walvoort", email = "dennis.Walvoort@wur.nl", role = c("aut", "cre")))
Depends: R (>= 3.0.0), tcltk
Imports: knitr, markdown, plyr, xtable, ggplot2
Suggests: testthat
VignetteBuilder: knitr
License: GPL (>= 3)
Packaged: 2014-09-19 12:09:37 UTC; dennis
Author: Willem M. G. M. van Loon [aut, cph], Dennis J. J. Walvoort [aut, cre]
Maintainer: Dennis J. J. Walvoort
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 14:57:31

More information about confidence at CRAN
Permanent link

New package iki.dataclim with initial version 1.0
Package: iki.dataclim
Type: Package
Title: Consistency, Homogeneity and Summary Statistics of Climatological Data
Version: 1.0
Date: 2014-07-18
Author: Boris Orlowsky
Maintainer: Boris Orlowsky
URL: www.climate-babel.org
Description: The package offers an S4 infrastructure to store climatological station data of various temporal aggregation scales. In-built quality control and homogeneity tests follow the methodology from the European Climate Assessment & Dataset project. Wrappers for climate indices defined by the Expert Team on Climate Change Detection and Indices (ETCCDI), a quick summary of important climate statistics and climate diagram plots provide a fast overview of climatological characteristics of the station.
License: GPL-3
Copyright: Boris Orlowsky
Depends: R (>= 3.0.0)
Imports: methods, zoo, lubridate, climdex.pcic (>= 1.1-1), PCICt
Packaged: 2014-09-18 20:02:19 UTC; oboris
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 10:33:43

More information about iki.dataclim at CRAN
Permanent link

New package BEANSP with initial version 1.0
Package: BEANSP
Type: Package
Title: Bayesian Estimate of Age-specific Nest Survival Probabilities
Version: 1.0
Date: 2014-08-09
Author: Chong He, Yiqun Yang, Jing Cao
Maintainer: Yiqun Yang
Description: Computing age specific nest survival rates based on a Bayesian hierarchical model. This package can handle unknown nest age, irregular visiting schedule and nest-specific covariates.
License: GPL-2
Packaged: 2014-09-18 16:01:43 UTC; emily
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-19 06:22:07

More information about BEANSP at CRAN
Permanent link

Thu, 18 Sep 2014

New package spatialnbda with initial version 1.0
Package: spatialnbda
Type: Package
Title: Performs spatial NBDA in a Bayesian context
Version: 1.0
Date: 2014-09-16
Author: Glenna Nightingale
Maintainer: Glenna Nightingale
Description: Network based diffusion analysis (NBDA) allows inference on the asocial and social transmission of information. This may involve the social transmission of a particular behaviour such as tool use, for example. For the NBDA, the key parameters estimated are the social effect and baseline rate parameters. The baseline rate parameter gives the rate at which the behaviour is first performed (or acquired) asocially amongst the individuals in a given population. The social effect parameter quantifies the effect of the social associations amongst the individuals on the rate at which each individual first performs or displays the behaviour. Spatial NBDA involves incorporating spatial information in the analysis. This is done by incorporating social networks derived from spatial point patterns (of the home bases of the individuals under study). In addition, a spatial covariate such as vegetation cover, or slope may be included in the modelling process.
LazyData: true
Depends: SocialNetworks(>= 1.1), mvtnorm(>= 0.9)
License: GPL
Packaged: 2014-09-18 12:10:05 UTC; Glenna
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 00:49:05

More information about spatialnbda at CRAN
Permanent link

New package RMOA with initial version 1.0
Package: RMOA
Version: 1.0
Title: Connect R with MOA for Massive Online Analysis
Authors@R: c(person("Jan", "Wijffels", role = c("aut", "cre"), email = "jwijffels@bnosac.be"), person("BNOSAC", role = "cph"))
Description: Connect R with MOA (Massive Online Analysis - http://moa.cms.waikato.ac.nz) to build classification models and regression models on streaming data or out-of-RAM data
Depends: RMOAjars (>= 1.0), rJava (>= 0.6-3), methods
Suggests: ff
SystemRequirements: Java (>= 5.0)
License: GPL-3
Copyright: Code is Copyright (C) Jan Wijffels and BNOSAC
Maintainer: Jan Wijffels
URL: http://www.bnosac.be, https://github.com/jwijffels/RMOA, http://moa.cms.waikato.ac.nz/
Packaged: 2014-09-18 09:57:52 UTC; janw
Author: Jan Wijffels [aut, cre], BNOSAC [cph]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 00:54:31

More information about RMOA at CRAN
Permanent link

New package nlWaldTest with initial version 1.0.1
Package: nlWaldTest
Type: Package
Title: Wald Test of nonlinear restrictions for regression parameters
Version: 1.0.1
Date: 2014-09-18
Depends: R (>= 3.0.2)
Imports: stringr, numDeriv
LazyData: yes
Author: Oleh Komashko
Maintainer: Oleh Komashko
Description: Nonlinear restrictions Wald Test for regression parameters using delta-method
License: GPL (>= 2)
Packaged: 2014-09-18 18:33:51 UTC; oleg
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 00:52:12

More information about nlWaldTest at CRAN
Permanent link

New package LogicForest with initial version 2.1.0
Package: LogicForest
Type: Package
Title: Logic Forest
Version: 2.1.0
Date: 2014-09-18
Author: Bethany Wolf
Maintainer: Bethany Wolf
Depends: R (>= 2.10), LogicReg, CircStats
Imports: gtools, plotrix
Description: Two classification ensemble methods based on logic regression models. LogForest uses a bagging approach to construct an ensemble of logic regression models. LBoost uses a combination of boosting and cross-validation to construct an ensemble of logic regression models. Both methods are used for classification of binary responses based on binary predictors and for identification of important variables and variable interactions predictive of a binary outcome.
License: GPL-2
Packaged: 2014-09-18 18:56:11 UTC; wolfb
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 00:46:31

More information about LogicForest at CRAN
Permanent link

New package uskewFactors with initial version 1.0
Package: uskewFactors
Type: Package
Title: Model-based clustering via mixtures of unrestricted skew-t factor analyzer models
Version: 1.0
Date: 2014-09-08
Author: Paula M. Murray, Ryan P. Browne, and Paul D. McNicholas
Maintainer: Paula M. Murray
Description: Implements mixtures of unrestricted skew-t factor analyzer models via the EM algorithm
Depends: tmvtnorm, mvtnorm, MCMCpack, MASS
License: GPL (>= 2)
Packaged: 2014-09-18 13:48:45 UTC; paulamurray
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-18 17:32:32

More information about uskewFactors at CRAN
Permanent link

New package SmoothHazard with initial version 1.2.0
Package: SmoothHazard
Title: Fitting illness-death model for interval-censored data
Version: 1.2.0
Author: Celia Touraine, Pierre Joly, Thomas A. Gerds
Description: SmoothHazard is a package for fitting illness-death (and survival) model with possibly interval-censored data for transition toward transient state. Left-truncated and right-censored data are also allowed. Proportional intensities regression models allow for covariates on each of the 3 transitions. We use either a parametric approach with Weibull baseline intensities or a semi-parametric approach with M-splines approximation of baseline intensities in order to obtain smooth estimates. Estimation of parameters is conducted by likelihood maximization in the parametric approach or penalized likelihood maximization in the semi-parametric approach.
Depends: R (>= 1.9.1)
Imports: lava, mvtnorm, prodlim
Maintainer: Thomas Alexander Gerds
License: GPL (>= 2)
Packaged: 2014-09-18 07:31:18 UTC; tag
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-18 09:45:25

More information about SmoothHazard at CRAN
Permanent link

New package ivbma with initial version 1.05
Package: ivbma
Type: Package
Title: Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors
Version: 1.05
Date: 2014-09-18
Author: Alex Lenkoski, Anna Karl, Andreas Neudecker
Maintainer: Alex Lenkoski
Description: This package allows one incorporate instrument and covariate uncertainty into instrumental variable regression.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2014-09-18 07:52:32 UTC; alex
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-18 10:23:22

More information about ivbma at CRAN
Permanent link

Wed, 17 Sep 2014

New package powerr with initial version 0.1-3
Package: powerr
Type: Package
Title: Analysis of Power System
Version: 0.1-3
Date: 2014-09-17
Authors@R: c(person("Jingfan", "Sun", role=c("aut", "cre"), email="sunjfsjfan@gmail.com"))
Author: Jingfan Sun [aut, cre]
Maintainer: Jingfan Sun
URL: https://github.com/Ambaboo/powerr
Imports: Rcpp (>= 0.11.2)
LinkingTo: Rcpp, RcppEigen (>= 0.3.2.2.0)
Depends: R (>= 3.1.1), methods, tools, Matrix
Description: 'powerr' is used for electric power system analysis and control, including basic power flow analysis and CASCADE analysis. Other features will be updated soon.
License: GPL (>= 2)
Packaged: 2014-09-17 21:16:33 UTC; Outrace
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-18 00:34:37

More information about powerr at CRAN
Permanent link

New package aRxiv with initial version 0.5.2
Package: aRxiv
Title: Interface to the arXiv API
Version: 0.5.2
Date: 2014-09-17
Authors@R: c(person("Karthik", "Ram", role="aut", email="karthik.ram@gmail.com"), person("Karl", "Broman", rol=c("aut","cre"), email="kbroman@biostat.wisc.edu"))
Description: An interface to the API for arXiv, a repository of electronic preprints for computer science, mathematics, physics, quantitative biology, quantitative finance, and statistics.
URL: https://github.com/ropensci/aRxiv
BugReports: https://github.com/ropensci/aRxiv/issues
Depends: R (>= 3.0.0)
License: MIT + file LICENSE
Imports: httr, utils, XML
Suggests: devtools, knitr, roxygen2, testthat
VignetteBuilder: knitr
LazyData: true
Packaged: 2014-09-17 16:14:55 UTC; kbroman
Author: Karthik Ram [aut], Karl Broman [aut, cre]
Maintainer: Karl Broman
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-18 01:01:41

More information about aRxiv at CRAN
Permanent link

New package adaptDA with initial version 1.0
Package: adaptDA
Type: Package
Title: Adaptive Mixture Discriminant Analysis
Version: 1.0
Date: 2014-09-15
Author: Charles Bouveyron
Maintainer: Charles Bouveyron
Depends: MASS
Description: The adaptive mixture discriminant analysis (AMDA) allows to adapt a model-based classifier to the situation where a class represented in the test set may have not been encountered earlier in the learning phase.
License: GPL-2
LazyLoad: yes
Packaged: 2014-09-17 20:23:28 UTC; charles
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-18 01:00:33

More information about adaptDA at CRAN
Permanent link

New package RMOAjars with initial version 1.0
Package: RMOAjars
Version: 1.0
Title: External jars required for package RMOA
Author: See file AUTHORS
Description: External jars required for package RMOA. RMOA is a framework to build data stream models on top of MOA (Massive Online Analysis - http://moa.cms.waikato.ac.nz)
Depends: R (>= 2.6.0)
Imports: rJava (>= 0.6-3)
SystemRequirements: Java (>= 5.0)
License: GPL-3
Copyright: See file COPYRIGHTS
Maintainer: Jan Wijffels
URL: http://moa.cms.waikato.ac.nz/, https://github.com/jwijffels/RMOA
Packaged: 2014-09-17 06:43:14 UTC; janw
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-17 18:33:28

More information about RMOAjars at CRAN
Permanent link

New package rmarkdown with initial version 0.3.3
Package: rmarkdown
Type: Package
Title: Dynamic Documents for R
Version: 0.3.3
Date: 2014-09-08
Author: JJ Allaire, Jonathan McPherson, Yihui Xie, Hadley Wickham, Joe Cheng, Jeff Allen
Maintainer: JJ Allaire
Description: Convert R Markdown documents into a variety of formats including HTML, MS Word, PDF, and Beamer.
Depends: R (>= 3.0)
Imports: tools, utils, knitr (>= 1.6), yaml (>= 2.1.5), htmltools (>= 0.2.4), caTools
Suggests: shiny (>= 0.10.1), testthat, digest
SystemRequirements: pandoc (>= 1.12.3) - http://johnmacfarlane.net/pandoc
URL: http://rmarkdown.rstudio.com
License: GPL-3
Packaged: 2014-09-17 11:35:12 UTC; jjallaire
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-17 18:12:29

More information about rmarkdown at CRAN
Permanent link

New package qgtools with initial version 1.0
Package: qgtools
Type: Package
Title: Tools for Quantitative Genetics Data Analyses
Version: 1.0
Date: 2014-09-05
Author: Jixiang Wu (South Dakota State University), Johnie N. Jenkins and Jack C. McCarty (USDA-ARS)
Maintainer: Jixiang Wu
Description: Two linear mixed model approaches: REML(restricted maximum likelihood) and MINQUE (minimum norm quadratic unbiased estimation) approaches and several resampling techniques are integrated for various quantitative genetics analyses. With these two types of approaches, various unbalanced data structures, missing data, and any irregular genetic mating designs can be analyzed and statistically tested. This package also offers fast computations for many large data sets. Other functions will be added to this R tool in the future.
License: GPL-2
LazyLoad: yes
Depends: stats,utils,Matrix, MASS
Packaged: 2014-09-16 02:38:25 UTC; Owner
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-17 18:12:26

More information about qgtools at CRAN
Permanent link

New package fCopulae with initial version 3011.81
Package: fCopulae
Title: Rmetrics - Bivariate Dependence Structures with Copulae
Date: 2013-03-18
Version: 3011.81
Author: Rmetrics Core Team, Diethelm Wuertz [aut], Tobias Setz [cre] Yohan Chalabi [ctb]
Maintainer: Tobias Setz
Description: Environment for teaching "Financial Engineering and Computational Finance".
Depends: R (>= 2.15.1), timeDate, timeSeries, fBasics, fMultivar
Suggests: methods, RUnit, tcltk, mvtnorm, sn
Note: SEVERAL PARTS ARE STILL PRELIMINARY AND MAY BE CHANGED IN THE FUTURE. THIS TYPICALLY INCLUDES FUNCTION AND ARGUMENT NAMES, AS WELL AS DEFAULTS FOR ARGUMENTS AND RETURN VALUES.
LazyData: yes
License: GPL (>= 2)
URL: https://www.rmetrics.org
Packaged: 2014-09-16 14:55:28 UTC; Tobi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-17 15:56:52

More information about fCopulae at CRAN
Permanent link

Tue, 16 Sep 2014

New package MatchingFrontier with initial version 0.3.17
Package: MatchingFrontier
Version: 0.3.17
Date: 2014-09-05
Type: Package
Title: Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference
Author: Gary King, Christopher Lucas, and Richard Nielsen
Maintainer: Christopher Lucas
Description: MatchingFrontier returns the subset of the data with the minimum imbalance for every possible subset size (N - 1, N - 2, ...), down to the data set with the minimum possible imbalance. The package also includes tools for the estimation of causal effects for each subset size, as well as functions for visualization and data export.
Imports: igraph, MASS
LazyData: true
License: GPL-3
Packaged: 2014-09-16 18:12:59 UTC; christopher
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 23:58:00

More information about MatchingFrontier at CRAN
Permanent link

New package nat.templatebrains with initial version 0.4.1
Package: nat.templatebrains
Type: Package
Title: NeuroAnatomy Toolbox (nat) Extension for Handling Template Brains
Version: 0.4.1
Date: 2014-09-13
Author: James Manton and Greg Jefferis
Maintainer: James Manton
Description: Extends package nat (NeuroAnatomy Toolbox) by providing objects and functions for handling template brains.
License: GPL-3
Depends: R (>= 2.10), rgl, nat (>= 1.5.9)
Suggests: testthat
Packaged: 2014-09-16 11:16:57 UTC; jefferis
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 18:40:27

More information about nat.templatebrains at CRAN
Permanent link

New package fRegression with initial version 3011.81
Package: fRegression
Title: Rmetrics - Regression Based Decision and Prediction
Date: 2013-12-17
Version: 3011.81
Author: Rmetrics Core Team, Diethelm Wuertz [aut], Tobias Setz [cre] Yohan Chalabi [ctb]
Maintainer: Tobias Setz
Description: Environment for teaching "Financial Engineering and Computational Finance".
Depends: R (>= 2.15.1), timeDate, timeSeries, fBasics
Imports: lmtest, mgcv, nnet, polspline
Suggests: methods, MASS, RUnit
Note: SEVERAL PARTS ARE STILL PRELIMINARY AND MAY BE CHANGED IN THE FUTURE. THIS TYPICALLY INCLUDES FUNCTION AND ARGUMENT NAMES, AS WELL AS DEFAULTS FOR ARGUMENTS AND RETURN VALUES.
LazyData: yes
License: GPL (>= 2)
URL: http://www.rmetrics.org
Packaged: 2014-09-16 10:08:42 UTC; Tobi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 18:40:22

More information about fRegression at CRAN
Permanent link

New package UPMASK with initial version 1.0
Package: UPMASK
Type: Package
Title: Unsupervised Photometric Membership Assignment in Stellar Clusters
Version: 1.0
Date: 2014-09-15
Author: Alberto Krone-Martins, Andre Moitinho
Maintainer: Alberto Krone-Martins
Description: An implementation of the UPMASK method for performing membership assignment in stellar clusters in R. It is prepared to use photometry and spatial positions, but it can take into account other types of data. The method is able to take into account arbitrary error models, and it is unsupervised, data-driven, physical-model-free and relies on as few assumptions as possible. The approach followed for membership assessment is based on an iterative process, principal component analysis, a clustering algorithm and a kernel density estimation.
Depends: R (>= 3.0)
License: GPL (>= 3)
Imports: parallel, MASS, RSQLite, DBI
NeedsCompilation: no
Packaged: 2014-09-16 09:32:25 UTC; brain
Repository: CRAN
Date/Publication: 2014-09-16 12:28:13

More information about UPMASK at CRAN
Permanent link

New package polidata with initial version 0.1.0
Package: polidata
Type: Package
Title: Political Data Interface in R
Description: This package provides easy access to various political data APIs directly from R. For example, you can access Google Civic Information API (https://developers.google.com/civic-information/) or Sunlight Congress API (https://sunlightlabs.github.io/congress/) for US Congress data, and POPONG API (http://data.popong.com/) for South Korea National Assembly data.
Version: 0.1.0
Date: 2014-06-13
Authors@R: c(person("Eunjeong", "Park", role = c("aut", "cre"), email = "ejpark04@snu.ac.kr"), person("Jong Hee", "Park", role = "aut", email = "jongheepark@snu.ac.kr"))
Maintainer: Eunjeong Park
License: MIT + file LICENSE
Imports: jsonlite, RCurl
Suggests: knitr
URL: http://github.com/e9t/polidata-r
BugReports: https://github.com/e9t/polidata-r/issues
VignetteBuilder: knitr
Packaged: 2014-09-16 06:57:36 UTC; e9t
Author: Eunjeong Park [aut, cre], Jong Hee Park [aut]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 11:58:04

More information about polidata at CRAN
Permanent link

New package smoother with initial version 1.0.0.0
Package: smoother
Type: Package
Title: Smoother
Version: 1.0.0.0
Date: 2014-09-13
Author: Nicholas Hamilton
Maintainer: Nicholas Hamilton
Description: A port of the matlab gaussian window smoothing function
License: GPL-2
Collate: 'smoother-package.R' 'functions.R' 'smth-gaussian.R' 'smth.R'
Packaged: 2014-09-16 03:57:42 UTC; nick
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 07:34:01

More information about smoother at CRAN
Permanent link

New package m4fe with initial version 0.1
Package: m4fe
Title: Models for Financial Economics
Version: 0.1
Author: Nathan Esau
Maintainer: Nathan Esau
Description: Provides binomial tree models for European, American and Asian Options as well as Interest Rates. Monte Carlo Simulation and Methods for Solving Differential Equations are also included.
Depends: R (>= 3.1.0)
License: GPL-2
LazyData: true
Packaged: 2014-09-16 02:40:33 UTC; nate
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 07:33:58

More information about m4fe at CRAN
Permanent link

Mon, 15 Sep 2014

New package kselection with initial version 0.1.0
Package: kselection
Type: Package
Title: Selection of k in k-means clustering
Version: 0.1.0
Date: 2014-09-15
Author: Daniel Rodriguez Perez
Maintainer: Daniel Rodriguez Perez
Description: Selection of k in k-means clustering based on Pham et al. paper ``Selection of k in k-means clustering''
License: GPL-3
URL: https://github.com/drodriguezperez/kselection
BugReports: https://github.com/drodriguezperez/kselection/issues
Imports: tools
Suggests: testthat
Packaged: 2014-09-15 19:42:02 UTC; daniel
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-16 03:19:49

More information about kselection at CRAN
Permanent link

New package redcapAPI with initial version 1.0
Package: redcapAPI
Type: Package
Title: R interface to REDCap
Version: 1.0
Date: 2014-09-15
Author: Benjamin Nutter. Initiated by Jeffrey Horner and Will Gray with contributions from Jeremy Stephens, and Will Beasley
Maintainer: Benjamin Nutter
Description: Access data stored in REDCap databases using the Application Programming Interface (API). REDCap (Research Electronic Data CAPture) is a web application for building and managing online surveys and databases developed at Vanderbilt University. The API allows users to access data and project meta data (such as the data dictionary) from the web programmatically. The redcapAPI package facilitates the process of accessing data with options to prepare an analysis-ready data set consistent with the definitions in a database's data dictionary.
License: GPL-2
Imports: chron, httr, stringr
Suggests: DBI, Hmisc
LazyLoad: yes
URL: https://github.com/nutterb/redcapAPI/wiki, https://github.com/nutterb/redcapAPI, http://project-redcap.org
Packaged: 2014-09-15 13:10:44 UTC; nutterb
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-16 02:22:08

More information about redcapAPI at CRAN
Permanent link

New package GlobalOptions with initial version 0.0.1
Package: GlobalOptions
Type: Package
Title: Generate functions to get or set global options
Version: 0.0.1
Date: 2014-9-15
Author: Zuguang Gu
Maintainer: Zuguang Gu
Depends: R (>= 2.10.0)
Imports: methods
Suggests: testthat (>= 0.3)
Description: Generate functions to get or set global options
URL: https://github.com/jokergoo/GlobalOptions
License: GPL (>= 2)
Packaged: 2014-09-15 21:09:26 UTC; IBM
Repository: CRAN
Date/Publication: 2014-09-16 02:03:23
NeedsCompilation: no

More information about GlobalOptions at CRAN
Permanent link

New package SOR with initial version 0.22
Package: SOR
Type: Package
Title: Estimation using Sequential Offsetted Regression
Version: 0.22
Date: 2014-9-15
Author: Lee S. McDaniel, Jonathan S. Schildcrout
Maintainer: Lee S. McDaniel
Depends: Matrix, stats
Description: Estimation for longitudinal data following outcome dependent sampling using the sequential offsetted regression technique. Includes support for binary, count, and continuous data.
License: GPL (>= 2)
Packaged: 2014-09-15 14:42:51 UTC; lmcda4
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-15 17:05:56

More information about SOR at CRAN
Permanent link

New package propOverlap with initial version 1.0
Package: propOverlap
Type: Package
Title: Feature (gene) selection based on the Proportional Overlapping Scores
Version: 1.0
Date: 2014-09-15
Author: Osama Mahmoud, Andrew Harrison, Aris Perperoglou, Asma Gul, Zardad Khan, Berthold Lausen
Maintainer: Osama Mahmoud
Description: A package for selecting the most relevant features (genes) in the high-dimensional binary classification problems. The discriminative features are identified using analyzing the overlap between the expression values across both classes. The package includes functions for measuring the proportional overlapping score for each gene avoiding the outliers effect. The used measure for the overlap is the one defined in the "Proportional Overlapping Score (POS)" technique for feature selection. A gene mask which represents a gene's classification power can also be produced for each gene (feature). The set size of the selected genes might be set by the user. The minimum set of genes that correctly classify the maximum number of the given tissue samples (observations) can be also produced.
Depends: R (>= 2.10), Biobase
LazyLoad: yes
License: GPL (>= 2)
Repository: CRAN
Packaged: 2014-09-15 12:28:08 UTC; osama
NeedsCompilation: no
Date/Publication: 2014-09-15 17:06:03

More information about propOverlap at CRAN
Permanent link

New package hot.deck with initial version 1.0
Package: hot.deck
Type: Package
Title: Multiple Hot-deck Imputation
Version: 1.0
Date: 2014-09-03
Author: Skyler Cranmer, Jeff Gill, Natalie Jackson, Andreas Murr, Dave Armstrong
Maintainer: Dave Armstrong
Description: Performs multiple hot-deck imputation of categorical and continuous variables in a data frame.
License: GPL (>= 2)
Depends: R (>= 3.0), mice
Suggests: knitr, mitools, miceadds, Zelig
Packaged: 2014-09-15 14:26:05 UTC; armstrod
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-15 17:06:01

More information about hot.deck at CRAN
Permanent link

New package nonnest2 with initial version 0.1-1
Package: nonnest2
Title: Tests of non-nested models
Version: 0.1-1
Author: Ed Merkle and Dongjun You
Maintainer: Dongjun You
Description: Testing non-nested models via theory supplied by Vuong (1989). Includes tests of model distinguishability and of model fit that can be applied to both nested and non-nested models. Also includes functionality to obtain confidence intervals associated with AIC and BIC.
Depends: R (>= 3.0.0)
Imports: CompQuadForm, mvtnorm, sandwich
License: GPL-2 | GPL-3
LazyData: yes
Packaged: 2014-09-15 11:53:15 UTC; Jun
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-15 14:20:59

More information about nonnest2 at CRAN
Permanent link

New package binequality with initial version 0.6.1
Package: binequality
Type: Package
Title: Methods for Analyzing Binned Income Data
Version: 0.6.1
Date: 2014-09-14
Author: Samuel V. Scarpino, Paul von Hippel, and Igor Holas
Maintainer: Samuel V. Scarpino
Description: Methods for model selection, model averaging, and calculating metrics, such as the Gini, Theil, Mean Log Deviation, etc, on binned income data where the topmost bin is right-censored. We provide both a non-parametric method, termed the bounded midpoint estimator (BME), which assigns cases to their bin midpoints; except for the censored bins, where cases are assigned to an income estimated by fitting a Pareto distribution. Because the usual Pareto estimate can be inaccurate or undefined, especially in small samples, we implement a bounded Pareto estimate that yields much better results. We also provide a parametric approach, which fits distributions from the generalized beta (GB) family. Because some GB distributions can have poor fit or undefined estimates, we fit 10 GB-family distributions and use multimodel inference to obtain definite estimates from the best-fitting distributions. We also provide binned income data from all United States of America school districts, counties, and states.
License: GPL (>= 3.0)
LazyLoad: yes
Depends: R (>= 2.10), gamlss (>= 4.2.7), gamlss.cens (>= 4.2.7), gamlss.dist (>= 4.3.0)
Imports: survival (>= 2.37-7), ineq (>= 0.2-11)
Packaged: 2014-09-14 22:50:02 UTC; scarpino
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-15 07:27:50

More information about binequality at CRAN
Permanent link

Sun, 14 Sep 2014

New package DLMtool with initial version 1.34
Package: DLMtool
Type: Package
Title: Data-Limited Methods Toolkit
Version: 1.34
Date: 2014-09-11
Author: Tom Carruthers
Maintainer: Tom Carruthers
Description: Simulation testing and implementation of data-limited fishery stock assessment methods
License: GPL-2
Depends: R (>= 2.10.0), methods, snowfall, boot, MASS
LazyData: yes
LazyLoad: yes
VignetteBuilder: knitr
Suggests: knitr
Packaged: 2014-09-14 05:06:54 UTC; Tom
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-14 10:12:18

More information about DLMtool at CRAN
Permanent link

Sat, 13 Sep 2014

New package recosystem with initial version 0.2.4
Package: recosystem
Type: Package
Title: Recommender System using Matrix Factorization
Version: 0.2.4
Date: 2014-09-12
Author: Yixuan Qiu, Chih-Jen Lin, Yu-Chin Juan, Yong Zhuang, Wei-Sheng Chin and other contributors. See file AUTHORS for details.
Maintainer: Yixuan Qiu
Description: This package is an R wrapper of the libmf library (http://www.csie.ntu.edu.tw/~cjlin/libmf/) for recommender system using matrix factorization. It is typically used to approximate an incomplete matrix using the product of two matrices in a latent space. Other common names for this task include "collaborative filtering", "matrix completion", "matrix recovery", etc.
License: BSD_3_clause + file LICENSE
Copyright: see file COPYRIGHTS
URL: https://github.com/yixuan/recosystem
BugReports: https://github.com/yixuan/recosystem/issues
SystemRequirements: C++11
Depends: methods
Imports: Rcpp (>= 0.11.0)
Suggests: knitr
LinkingTo: Rcpp
VignetteBuilder: knitr
Packaged: 2014-09-12 20:52:34 UTC; qyx
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-13 08:01:57

More information about recosystem at CRAN
Permanent link

Fri, 12 Sep 2014

New package treatSens with initial version 1.0
Package: treatSens
Type: Package
Title: Sensitivity analysis for causal inference
Version: 1.0
Date: 2014-09-02
Author: Nicole Bohme Carnegie, Masataka Harada, Jennifer Hill
Maintainer: "Nicole Bohme Carnegie"
Depends: R (>= 3.1.0)
Suggests: doParallel, foreach
Description: Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment.
License: GPL-2
LazyLoad: yes
LazyData: yes
Packaged: 2014-09-12 17:24:24 UTC; carnegin
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-12 20:27:07

More information about treatSens at CRAN
Permanent link

New package nettools with initial version 1.0.1
Package: nettools
Type: Package
Title: A Network Comparison Framework
Version: 1.0.1
Date: 2014-09-02
Authors@R: c(person("Michele","Filosi",role=c("aut","cre"), email = "filosi@fbk.eu"), person("Roberto", "Visintainer", role = "aut", email = "visintainer@fbk.eu"), person("Samantha", "Riccadonna", role = "aut", email = "samantha.riccadonna@fmach.it"), person("Giuseppe", "Jurman", role = "ctb", email = "jurman@fbk.eu"), person("Cesare", "Furlanello", role = "ctb", email = "furlan@fbk.eu"))
Maintainer: Michele Filosi
Depends: R (>= 2.14.1), methods
Imports: parallel, rootSolve, dtw, WGCNA, minet, Matrix, minerva, combinat, igraph
Description: A collection of network inference methods for co-expression networks, quantitative network distances and a novel framework for network stability analysis.
License: CC BY-NC-SA 4.0
Packaged: 2014-09-11 10:37:46 UTC; michele
Author: Michele Filosi [aut, cre], Roberto Visintainer [aut], Samantha Riccadonna [aut], Giuseppe Jurman [ctb], Cesare Furlanello [ctb]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-12 16:16:26

More information about nettools at CRAN
Permanent link

New package Mobilize with initial version 2.16-4
Package: Mobilize
Type: Package
Title: Mobilize plots and functions
Version: 2.16-4
Date: 2014-09-11
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
Description: Some canned plots and functions designed for the mobilize project. Designed to be called remotely.
License: GPL
Depends: R (>= 2.14), stats, methods, Ohmage
Imports: ggplot2, wordcloud, reshape2
Suggests: XML, maps
Packaged: 2014-09-11 10:24:17 UTC; jeroen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-12 07:53:18

More information about Mobilize at CRAN
Permanent link

Thu, 11 Sep 2014

New package lefse with initial version 0.1
Package: lefse
Type: Package
Title: Phylogenetic and Functional Analyses for Ecology
Version: 0.1
Date: 2014-09-04
Author: Nathan G. Swenson
Maintainer: Nathan G. Swenson
Description: Utilizing phylogenetic and functional information for the analyses of ecological datasets. The analyses include methods for quantifying the phylogenetic and functional diversity of assemblages.
License: GPL-2 | GPL-3
Depends: R (>= 2.10)
Imports: ape, picante, geiger, fBasics, SDMTools, vegan
Packaged: 2014-09-05 10:37:55 UTC; nathanswenson
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-11 21:03:26

More information about lefse at CRAN
Permanent link

New package gapmap with initial version 0.0.1
Package: gapmap
Type: Package
Title: Functions for Drawing Gapped Cluster Heatmap with ggplot2
Version: 0.0.1
URL: https://bitbucket.org/biovizleuven/gapmap/
Date: 2014-09-10
Author: Ryo Sakai
Maintainer: Ryo Sakai
Description: The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.
License: GPL-2 | GPL-3
Depends: ggplot2, grid, reshape2
Suggests: knitr, dendsort
VignetteBuilder: knitr
Packaged: 2014-09-11 10:21:51 UTC; Ryo
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-11 13:06:15

More information about gapmap at CRAN
Permanent link

New package FRESA.CAD with initial version 1.0
Package: FRESA.CAD
Type: Package
Title: FeatuRE Selection Algorithms for Computer Aided Diagnosis
Version: 1.0
Date: 2014-09-10
Author: Jose Gerardo Tamez-Pena
Maintainer: Jose Gerardo Tamez-Pena
Description: FRESA.CAD provides a set of functions and feature selection algorithms for building Computer Aided Diagnosis Models
License: LGPL (>= 2)
Depends: R (>= 3.0.0),Hmisc,pROC,stringr,miscTools,survival
Suggests: class, cvTools, glmnet, speedglm, gplots, RColorBrewer, nlme, rpart
Packaged: 2014-09-11 12:24:47 UTC; Jose Tamez
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-11 15:08:50

More information about FRESA.CAD at CRAN
Permanent link

New package lcmm with initial version 1.6.6
Package: lcmm
Type: Package
Title: Estimation of Extended Mixed Models Using Latent Classes and Latent Processes
Version: 1.6.6
Date: 2014-09-10
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima
Description: Functions for the estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models and mixed models for curvilinear univariate or multivariate longitudinal outcomes using a maximum likelihood estimation method.
License: GPL (>= 2.0)
Depends: R (>= 2.9.0), survival
LazyLoad: yes
Packaged: 2014-09-10 09:08:05 UTC; vp3
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-11 11:39:40

More information about lcmm at CRAN
Permanent link

New package gdsfmt with initial version 1.1.0
Package: gdsfmt
Type: Package
Title: R Interface to CoreArray Genomic Data Structure (GDS) files
Version: 1.1.0
Date: 2014-09-10
Depends: R (>= 2.14.0)
Imports: methods
Suggests: parallel, RUnit
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng
BugReports: http://github.com/zhengxwen/gdsfmt/issues
Description: This package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory. The gdsfmt package offers the efficient operations specifically designed for integers with less than 8 bits, since a single genetic/genomic variant, such like single-nucleotide polymorphism, usually occupies fewer bits than a byte. Data compression and decompression are also supported. It is allowed to read a GDS file in parallel with multiple R processes supported by the parallel package.
License: LGPL-3
URL: http://corearray.sourceforge.net/, http://github.com/zhengxwen/gdsfmt
Packaged: 2014-09-11 06:43:57 UTC; sts
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-11 12:33:04

More information about gdsfmt at CRAN
Permanent link

New package recosystem with initial version 0.2.3
Package: recosystem
Type: Package
Title: Recommender System using Matrix Factorization
Version: 0.2.3
Date: 2014-09-08
Authors@R: c(person(given = "Yixuan", family = "Qiu", role = c("aut", "cre"), email = "yixuan.qiu@cos.name"), person(given = "Chih-Jen", family = "Lin", role = c("aut","cph"), comment = "original C++ code"), person(given = "Yu-Chin", family = "Juan", role = c("aut","cph"), comment = "original C++ code"), person(given = "Yong", family = "Zhuang", role = c("aut","cph"), comment = "original C++ code"), person(given = "Wei-Sheng", family = "Chin", role = c("aut","cph"), comment = "original C++ code"))
Maintainer: Yixuan Qiu
Description: This package is an R wrapper of the libmf library (http://www.csie.ntu.edu.tw/~cjlin/libmf/) for recommender system using matrix factorization. It is typically used to approximate an incomplete matrix using the product of two matrices in a latent space. Other common names for this task include "collaborative filtering", "matrix completion", "matrix recovery", etc.
License: BSD_3_clause + file LICENSE
Copyright: see file COPYRIGHTS
URL: https://github.com/yixuan/recosystem
BugReports: https://github.com/yixuan/recosystem/issues
SystemRequirements: C++11
Depends: methods
Imports: Rcpp (>= 0.11.0)
Suggests: knitr
LinkingTo: Rcpp
VignetteBuilder: knitr
Packaged: 2014-09-08 15:06:23 UTC; qyx
Author: Yixuan Qiu [aut, cre], Chih-Jen Lin [aut, cph] (original C++ code), Yu-Chin Juan [aut, cph] (original C++ code), Yong Zhuang [aut, cph] (original C++ code), Wei-Sheng Chin [aut, cph] (original C++ code)
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-11 10:00:26

More information about recosystem at CRAN
Permanent link

New package rChoiceDialogs with initial version 1.0.6
Package: rChoiceDialogs
Type: Package
Title: rChoiceDialogs collection
Version: 1.0.6
Date: 2014-09-05
Authors@R: c(person("Alex","Lisovich",role=c("aut","cre"),email="alex.lisovich@gmail.com"), person("Roger","Day",role="aut",email="day01@pitt.edu"), person("Sun Microsystems, Inc",role="cph", comment="swing-layout-1.0.4.jar, download from http://www.java2s.com/Code/Jar/s/Downloadswinglayout104jar.htm"))
Description: Collection of portable choice dialog widgets
License: LGPL (>= 2.1)
Depends: rJava, utils
Imports: tcltk
Collate: 'zzz.R' 'rChoiceDialogs-package.R' 'rFileChooser.R' 'rListChooser.R' 'rMiscFunctions.R'
Packaged: 2014-09-10 20:49:54 UTC; alex
Author: Alex Lisovich [aut, cre], Roger Day [aut], Sun Microsystems, Inc [cph] (swing-layout-1.0.4.jar, download from http://www.java2s.com/Code/Jar/s/Downloadswinglayout104jar.htm)
Maintainer: Alex Lisovich
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-11 07:26:55

More information about rChoiceDialogs at CRAN
Permanent link

New package OjaNP with initial version 0.9-8
Package: OjaNP
Type: Package
Title: Multivariate Methods Based on the Oja Median and Related Concepts
Version: 0.9-8
Date: 2014-09-10
Author: Daniel Fischer, Jyrki Mttnen, Klaus Nordhausen, Daniel Vogel
Maintainer: Klaus Nordhausen
Depends: R (>= 2.9.0), ICS, ICSNP
Description: The package provides functions for the Oja median, Oja signs and ranks and methods based upon them.
License: GPL (>= 2)
Encoding: latin1
LazyLoad: yes
Packaged: 2014-09-10 09:19:18 UTC; klaus
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-11 08:48:28

More information about OjaNP at CRAN
Permanent link

New package funFEM with initial version 1.0
Package: funFEM
Type: Package
Title: Clustering in the Discriminative Functional Subspace
Version: 1.0
Date: 2014-09-06
Author: Charles Bouveyron
Depends: R (>= 2.10), MASS, fda, elasticnet
Maintainer: Charles Bouveyron
Description: The funFEM algorithm (Bouveyron et al., 2014) allows to cluster functional data by modeling the curves within a common and discriminative functional subspace.
License: GPL-2
LazyLoad: yes
Packaged: 2014-09-10 07:52:48 UTC; charles
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-11 07:36:22

More information about funFEM at CRAN
Permanent link

Wed, 10 Sep 2014

New package saery with initial version 1.0
Package: saery
Type: Package
Title: Small Area Estimation for Rao and Yu Model
Version: 1.0
Date: 2014-09-10
Author: Maria Dolores Esteban Lefler, Domingo Morales Gonzalez, Agustin Perez Martin
Maintainer: Agustin Perez Martin
Description: A complete set of functions to calculate several EBLUP (Empirical Best Linear Unbiased Predictor) estimators and their mean squared errors. All estimators are based on an area-level linear mixed model introduced by Rao and Yu in 1994 (see documentation). The REML method is used for fitting this model.
License: GPL-2
LazyData: true
Packaged: 2014-09-10 20:48:45 UTC; agus
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-10 23:18:02

More information about saery at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.