Fri, 29 May 2009

Package rjags updated to version 1.0.3-9 with previous version 1.0.3-8 dated 2009-03-10

Author: Martyn Plummer
Title: Bayesian graphical models using MCMC
Description: Interface to the JAGS MCMC library

Diff between rjags versions 1.0.3-8 dated 2009-03-10 and 1.0.3-9 dated 2009-05-29

 DESCRIPTION        |   14 ++++++++------
 NAMESPACE          |    4 +++-
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 7 files changed, 25 insertions(+), 12 deletions(-)

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Package plsgenomics updated to version 1.2-4 with previous version 1.2-2 dated 2007-02-15

Author: Anne-Laure Boulesteix , Sophie Lambert-Lacroix , Julie Peyre , and Korbinian Strimmer .
Title: PLS analyses for genomics
Description: This package provides routines for PLS-based genomic analyses. It implements PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS.

Diff between plsgenomics versions 1.2-2 dated 2007-02-15 and 1.2-4 dated 2009-05-29

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 plsgenomics-1.2-4/plsgenomics/man/mgsim.cv.Rd           |    2 
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 plsgenomics-1.2-4/plsgenomics/man/pls.lda.cv.Rd         |    2 
 plsgenomics-1.2-4/plsgenomics/man/pls.regression.Rd     |    2 
 plsgenomics-1.2-4/plsgenomics/man/pls.regression.cv.Rd  |    2 
 plsgenomics-1.2-4/plsgenomics/man/preprocess.Rd         |    2 
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 plsgenomics-1.2-4/plsgenomics/man/variable.selection.Rd |    2 
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Package glmmML updated to version 0.81-5 with previous version 0.81-4 dated 2009-02-11

Author: Göran Broström
Title: Generalized linear models with clustering
Description: A Maximum Likelihood and bootstrap approach to mixed models

Diff between glmmML versions 0.81-4 dated 2009-02-11 and 0.81-5 dated 2009-05-29

 ChangeLog    |    3 +++
 DESCRIPTION  |   13 ++++++++-----
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 3 files changed, 13 insertions(+), 7 deletions(-)

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Package flexmix updated to version 2.2-3 with previous version 2.2-0 dated 2008-10-03

Author: Friedrich Leisch and Bettina Gruen
Title: Flexible Mixture Modeling
Description: FlexMix implements a general framework for finite mixtures of regression models using the EM algorithm. FlexMix provides the E-step and all data handling, while the M-step can be supplied by the user to easily define new models. Existing drivers implement mixtures of standard linear models, generalized linear models and model-based clustering.

Diff between flexmix versions 2.2-0 dated 2008-10-03 and 2.2-3 dated 2009-05-29

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Package exactmaxsel updated to version 1.0-4 with previous version 1.0-2 dated 2007-02-15

Author: Anne-Laure Boulesteix
Title: Maximally selected statistics for binary response variables - Exact methods
Description: This package computes the exact distribution of some maximally selected statistics in the following setting: the 'response' variable is binary, the splitting variable may be nominal, ordinal or continuous. Currently, the package implements the chi-square statistic and the Gini-index.

Diff between exactmaxsel versions 1.0-2 dated 2007-02-15 and 1.0-4 dated 2009-05-29

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Package ccgarch updated to version 0.1.4-2 with previous version 0.1.4-1 dated 2009-05-11

Author: Tomoaki Nakatani
Title: Conditional Correlation GARCH models
Description: Functions for estimating and simulating the family of the CC-GARCH models.

Diff between ccgarch versions 0.1.4-1 dated 2009-05-11 and 0.1.4-2 dated 2009-05-29

 DESCRIPTION       |    8 ++++----
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Package WriteXLS updated to version 1.7.1 with previous version 1.6.0 dated 2009-03-31

Author: Marc Schwartz
Title: Cross-platform Perl based R function to create Excel 2003 (XLS) files
Description: Cross-platform perl based R function to create Excel (XLS) files from one or more data frames. Each data frame will be written to a separate named worksheet in the Excel spreadsheet. The worksheet name will be the name of the data frame it contains or can be specified by the user.

Diff between WriteXLS versions 1.6.0 dated 2009-03-31 and 1.7.1 dated 2009-05-29

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Package WilcoxCV updated to version 1.0-2 with previous version 1.0-1 dated 2007-04-11

Author: Anne-Laure Boulesteix .
Title: Wilcoxon-based variable selection in cross-validation
Description: This package provides functions to perform fast variable selection based on the Wilcoxon rank sum test in the cross-validation or Monte-Carlo cross-validation settings, for use in microarray-based binary classification.

Diff between WilcoxCV versions 1.0-1 dated 2007-04-11 and 1.0-2 dated 2009-05-29

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 8 files changed, 32 insertions(+), 28 deletions(-)

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Package SNPmaxsel updated to version 1.0-3 with previous version 1.0-1 dated 2007-06-11

Author: Anne-Laure Boulesteix
Title: Maximally selected statistics for SNP data
Description: This package implements asymptotic methods related to maximally selected statistics, with applications to SNP data.

Diff between SNPmaxsel versions 1.0-1 dated 2007-06-11 and 1.0-3 dated 2009-05-29

 DESCRIPTION              |   19 +++++++++++--------
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 5 files changed, 21 insertions(+), 18 deletions(-)

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Package MAclinical updated to version 1.0-4 with previous version 1.0-2 dated 2008-09-28

Author: Anne-Laure Boulesteix .
Title: Class prediction based on microarray data and clinical parameters
Description: 'Maclinical' implements class prediction using both microarray data and clinical parameters. It addresses the question of the additional predictive value of microarray data. Class prediction is performed using a two-step method combining (pre-validated) PLS dimension reduction and random forests.

Diff between MAclinical versions 1.0-2 dated 2008-09-28 and 1.0-4 dated 2009-05-29

 DESCRIPTION                  |   23 +++++++++++++++--------
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Package tgp updated to version 2.2-2 with previous version 2.2-1 dated 2009-02-20

Author: Robert B. Gramacy and Matt A. Taddy
Title: Bayesian treed Gaussian process models
Description: Bayesian nonstationary, semiparametric nonlinear regression and design by treed Gaussian processes with jumps to the limiting linear model (LLM). Special cases also implemented include Bayesian linear models, CART, treed linear models, stationary separable and isotropic Gaussian processes. Provides 1-d and 2-d plotting functions (with projection and slice capabilities) and tree drawing, designed for visualization of tgp-class output. Sensitivity analysis and multi-resolution models are supported. Sequential experimental design and adaptive sampling functions are also provided, including ALM, ALC, and expected improvement. The latter supports derivative-free optimization of noisy black-box functions.

Diff between tgp versions 2.2-1 dated 2009-02-20 and 2.2-2 dated 2009-05-29

 ChangeLog         |   12 +++++++++++-
 DESCRIPTION       |   37 +++++++++++++++++++++----------------
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New package rainbow with initial version 1.0
Package: rainbow
Type: Package
Title: Rainbow plots, functional bagplot, functional HDR boxplot
Version: 1.0
Date: 2009-05-12
Depends: R (>= 2.6.0), hdrcde, ks, MASS, pcaPP
Suggests: tseries
Author: Han Lin Shang and Rob J Hyndman
Maintainer: Han Lin Shang
Description: Functions and datasets used in the JCGS paper
License: GPL (>= 2)
LazyData: yes
LazyLoad: yes
URL: http://monashforecasting.com/index.php?title=R_packages
Packaged: 2009-05-28 23:20:59 UTC; han
Repository: CRAN
Date/Publication: 2009-05-29 07:01:26

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Package orientlib updated to version 0.9.2 with previous version 0.9.1 dated 2009-01-26

Author: Duncan Murdoch
Title: Support for orientation data
Description: Representations, conversions and display of orientation SO(3) data. See the orientlib help topic for details.

Diff between orientlib versions 0.9.1 dated 2009-01-26 and 0.9.2 dated 2009-05-29

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Package classInt updated to version 0.1-11 with previous version 0.1-9 dated 2008-01-19

Author: Roger Bivand , with contributions by Hisaji Ono and Richard Dunlap
Title: Choose univariate class intervals
Description: A package for choosing univariate class intervals for mapping or other graphics purposes

Diff between classInt versions 0.1-9 dated 2008-01-19 and 0.1-11 dated 2009-05-29

 ChangeLog             |   19 +++++++++++
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Package binomSamSize updated to version 0.1-2 with previous version 0.1-1 dated 2009-05-18

Author: Michael Hoehle with contributions by Wei Liu
Title: Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling
Description: A suite of functions to compute confidence intervals and necessary sample sizes for the parameter p of the Bernoulli B(p) distribution under simple random sampling or under pooled sampling. Such computations are e.g. of interest when investigating the incidence or prevalence in populations. The package contains functions to compute coverage probabilities and coverage coefficients of the provided confidence intervals procedures. Sample size calculations are based on expected length.

Diff between binomSamSize versions 0.1-1 dated 2009-05-18 and 0.1-2 dated 2009-05-29

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New package RthroughExcelWorkbooksInstaller with initial version 1.1-13
Package: RthroughExcelWorkbooksInstaller
Type: Package
Title: Excel Workbooks supporting Statistics courses using 'R through Excel'
Version: 1.1-13
Date: 2009-05-28
Author: Richard M. Heiberger and Erich Neuwirth
Maintainer: Richard M. Heiberger
Depends: R (>= 2.5.1), rcom (>= 1.5-2), HH (>= 2.1-27)
Imports: RExcelInstaller (>= 3.0-6)
Description: Workbooks in Excel that illustrate statistical concepts by accessing R functions from Excel. These workbooks use the automatic recalculation mode of Excel to update calculations and graphs in R. This R package downloads an executable which installs the workbooks on MS Windows systems where RExcel has already been installed.
SystemRequirements: Windows, Excel >= 2002. Excel 2007 requires MS Office 2007 SP >= 1. Excel 2002 and Excel 2003 require MS Office 2003 SP >= 3.
License: LGPL
Packaged: 2009-05-28 21:35:40 UTC; rmh28285
Repository: CRAN
Date/Publication: 2009-05-29 07:01:13

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Package BAS updated to version 0.3 with previous version 0.1 dated 2009-03-02

Author: Merlise Clyde with contributions from Michael Littman
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models using stochastic or deterministic sampling without replacement from posterior distributions. Prior distributions on coefficients are from Zellner's g-prior or mixtures of g-priors corresponding to the Zellner-Siow Cauchy Priors or the Liang et al hyper-g priors (to appear JASA 2008). Other model selection criterian include AIC and BIC. Sampling probabilities may be updated based on the sampled models. Allows uniform or beta-binomial prior distributions on models.

Diff between BAS versions 0.1 dated 2009-03-02 and 0.3 dated 2009-05-29

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Thu, 28 May 2009

Package RWeka updated to version 0.3-18 with previous version 0.3-17 dated 2009-04-29

Author: Kurt Hornik, with contributions from Christian Buchta, Torsten Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Title: R/Weka interface
Description: An R interface to Weka (Version 3.6.0). Weka is a collection of machine learning algorithms for data mining tasks written in Java, containing tools for data pre-processing, classification, regression, clustering, association rules, and visualization. Both the R interface and Weka itself are contained in the RWeka package. For more information on Weka see http://www.cs.waikato.ac.nz/~ml/weka/.

Diff between RWeka versions 0.3-17 dated 2009-04-29 and 0.3-18 dated 2009-05-28

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Package RCurl updated to version 0.97-3 with previous version 0.95-1 dated 2009-05-18

Author: Duncan Temple Lang
Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.

Diff between RCurl versions 0.95-1 dated 2009-05-18 and 0.97-3 dated 2009-05-28

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Package simone updated to version 0.1-3 with previous version 0.1-2 dated 2009-02-23

Author: Christophe Ambroise , Julien Chiquet , Gilles Grasseau , Alexander Adam Smith
Title: Statistical Inference for MOdular NEtworks (SIMoNe)
Description: The SIMoNe algorithm iteratively combines edge estimation and node classification on the basis of a mixture model for edge weight distributions. Edges inference may be managed via two alternative methods: GLasso and Meinhausan-Buhlman's approach. Node Classification is managed by MixNet, a mixture model for random graphs.

Diff between simone versions 0.1-2 dated 2009-02-23 and 0.1-3 dated 2009-05-28

 DESCRIPTION  |   22 ++++++++++++++++------
 NEWS         |    3 +++
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 4 files changed, 22 insertions(+), 9 deletions(-)

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New package simctest with initial version 1.0-0
Package: simctest
Version: 1.0-0
Date: 2009-05-20
Title: Sequential (or Safe) Implementation of Monte Carlo tests with uniformly bounded resampling risk.
Author: Axel Gandy
Maintainer: Axel Gandy
Depends: R (>= 2.2.0), methods, stats
Suggests:
Description: Efficient computation of p-values for Monte Carlo tests, e.g. bootstrap tests. The algorithm provides a uniform bound on the resampling risk.
License: GPL (>= 2)
URL: http://www.ma.ic.ac.uk/~agandy
Packaged: Thu May 28 17:16:50 2009; agandy
Repository: CRAN
Date/Publication: 2009-05-28 17:59:19

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Package runjags updated to version 0.9.4-2 with previous version 0.9.3-3 dated 2009-01-08

Author: Matthew Denwood (funded as part of the DEFRA VTRI project 0101).
Title: Run Bayesian MCMC Models in the BUGS syntax from Within R
Description: A set of functions to allow any user specified model to be run in JAGS from within R, returning the MCMC chains as R objects. Includes functions to read external WinBUGS type textfiles, and allows several ways of automatically specifying model data from existing R objects or R functions. Also includes functions to automatically calculate model run length, autocorrealtion and Gelman Rubin statistic diagnostics for all models to simplify the process of achieving chain convergence. Designed for maximum compatibility with WinBUGS syntax, although minor modification to existing .bug files will be required. Requires Just Another Gibbs Sampler (JAGS) for most functions, see: http://www-fis.iarc.fr/~martyn/software/jags/

Diff between runjags versions 0.9.3-3 dated 2009-01-08 and 0.9.4-2 dated 2009-05-28

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Package penalized updated to version 0.9-24 with previous version 0.9-23 dated 2009-03-12

Author: Jelle Goeman
Title: L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model
Description: A package for fitting possibly high dimensional penalized regression models. The penalty structure can be any combination of an L1 penalty (lasso), an L2 penalty (ridge) and a positivity constraint on the regression coefficients. The supported regression models are linear, logistic and poisson regression and the Cox Proportional Hazards model. Cross-validation routines allow optimization of the tuning parameters.

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Package lmtest updated to version 0.9-24 with previous version 0.9-23 dated 2009-02-05

Author: Torsten Hothorn, Achim Zeileis, Giovanni Millo, David Mitchell
Title: Testing Linear Regression Models
Description: A collection of tests, data sets and examples for diagnostic checking in linear regression models.

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Package sp updated to version 0.9-37 with previous version 0.9-36 dated 2009-04-29

Author: Edzer J. Pebesma , Roger Bivand and others
Title: classes and methods for spatial data
Description: A package that provides classes and methods for spatial data. The classes document where the spatial location information resides, for 2D or 3D data. Utility functions are provided, e.g. for plotting data as maps, spatial selection, as well as methods for retrieving coordinates, for subsetting, print, summary, etc.

Diff between sp versions 0.9-36 dated 2009-04-29 and 0.9-37 dated 2009-05-28

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Package scatterplot3d updated to version 0.3-28 with previous version 0.3-27 dated 2008-05-08

Author: Uwe Ligges
Title: 3D Scatter Plot
Description: Plots a three dimensional (3D) point cloud.

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Package plink updated to version 1.1-1 with previous version 1.1-0 dated 2009-05-15

Author: Jonathan P. Weeks
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute linking constants and conduct chain linking of unidimensional or multidimensional tests for multiple groups under a nonequivalent groups common item design. The unidimensional methods include the Mean/Mean, Mean/Sigma, Haebara, and Stocking-Lord methods for dichotomous (1PL, 2PL and 3PL) and/or polytomous (graded response, partial credit/generalized partial credit, nominal, and multiple-choice model) items. The multidimensional methods include the Reckase-Martineau method and extensions of the Haebara and Stocking-Lord method using a single dilation parameter, multiple dilation parameters, or the Oshima, Davey, & Lee approach for multidimensional extensions of all the unidimensional dichotomous and polytomous item response models. The package also includes functions for importing item and/or ability parameters from common IRT software and ploting item characteristic/category curves or surfaces and vector plots.

Diff between plink versions 1.1-0 dated 2009-05-15 and 1.1-1 dated 2009-05-28

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Package futile updated to version 1.0.2 with previous version 1.0 dated 2009-04-15

Author: Brian Lee Yung Rowe
Title: Futile function utilities
Description: A collection of utility functions to expedite software development

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New package estout with initial version 0.4-1
Package: estout
Version: 0.4-1
Date: 2009-05-20
Title: Estimates Output
Author: Felix Kaminsky , inspired by the estout package for Stata.
Maintainer: Felix Kaminsky
Description: The function collection stores the estimates of several models and formats it to a LaTeX-formated table of the form estimate starred and std.err. below.
License: GPL-2
URL: http://www.r-project.org, http://www.texnix.de
Packaged: Wed May 27 22:22:35 2009; cataclysmic
Repository: CRAN
Date/Publication: 2009-05-28 07:13:05

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Package SpatialExtremes updated to version 1.3-0 with previous version 1.2-0 dated 2009-04-20

Author: Mathieu Ribatet
Title: Modelling Spatial Extremes
Description: This package proposes several approaches for spatial extremes modelling.

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Package HH updated to version 2.1-29 with previous version 2.1-28 dated 2009-05-25

Author: Richard M. Heiberger
Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display (Springer, ISBN 0-387-40270-5). This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The authors demonstrate how to analyze data---showing code, graphics, and accompanying computer listings---for all the methods they cover. They emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises.

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Wed, 27 May 2009

Package spgrass6 updated to version 0.6-6 with previous version 0.6-5 dated 2009-04-30

Author: Roger Bivand
Title: Interface between GRASS 6 geographical information system and R
Description: Interpreted interface between GRASS 6 geographical information system and R, based on starting R from within the GRASS environment.

Diff between spgrass6 versions 0.6-5 dated 2009-04-30 and 0.6-6 dated 2009-05-27

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Package simex updated to version 1.4 with previous version 1.2 dated 2006-02-26

Author: Wolfgang Lederer , Helmut Küchenhoff
Title: SIMEX- and MCSIMEX-Algorithm for measurement error models
Description: Implementation of the SIMEX-Algorithm by Cook & Stefanski and MCSIMEX by Küchenhoff, Mwalili & Lesaffre

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Package shapes updated to version 1.1-3 with previous version 1.1-2 dated 2009-04-17

Author: Ian Dryden
Title: Statistical shape analysis
Description: Routines for the statistical analysis of shapes. In particular, the package provides routines for procrustes analysis, displaying shapes and principal components, testing for mean shape difference, thin-plate spline transformation grids and edge superimposition methods.

Diff between shapes versions 1.1-2 dated 2009-04-17 and 1.1-3 dated 2009-05-27

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Package relsurv updated to version 1.5.1 with previous version 1.5 dated 2008-11-13

Author: Maja Pohar Perme
Title: Relative survival regression
Description: Various functions for regression in relative survival.

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New package packS4 with initial version 0.5
Package: packS4
Type: Package
Title: Toy example of S4 package
Version: 0.5
Date: 2008-07-22
Author: Christophe Genolini
Maintainer:
Description: This package comes to illustrate the book "Petit Manuel de Programmation Orientee Objet sous R"
License: GPL (>= 2)
LazyLoad: yes
Depends: methods, graphics
Collate: global.R ClassU.R ClassV.R ClassW.R ClassV-ClassW.R
URL: www.r-project.org,christophe.genolini.free.fr/webTutorial
Packaged: 2009-05-26 21:29:11 UTC; Christophe
Repository: CRAN
Date/Publication: 2009-05-27 08:59:25

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Package multcomp updated to version 1.0-8 with previous version 1.0-7 dated 2009-02-11

Author: Torsten Hothorn, Frank Bretz and Peter Westfall with contributions by Richard M. Heiberger
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models.

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Package mpm updated to version 1.0-15 with previous version 1.0-13 dated 2009-04-14

Author: Luc Wouters
Title: Multivariate Projection Methods
Description: Exploratory graphical analysis of multivariate data, specifically gene expression data with different projection methods: principal component analysis, correspondence analysis, spectral map analysis.

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Package monomvn updated to version 1.7-1 with previous version 1.7 dated 2009-04-15

Author: Robert B. Gramacy
Title: Estimation for multivariate normal and Student-t data with monotone missingness
Description: Estimation of multivariate normal and student-t data of arbitrary dimension where the pattern of missing data is monotone. Through the use of parsimonious/shrinkage regressions (plsr, pcr, lasso, ridge, etc.), where standard regressions fail, the package can handle a nearly arbitrary amount of missing data. The current version supports maximum likelihood inference and a full Bayesian approach employing scale-mixtures for the lasso (double-exponential) prior and Student-t errors. Monotone data augmentation extends this Bayesian approach to arbitrary missingness patterns. A fully functional standalone interface to the Bayesian lasso (from Park & Casella) and ridge regression with model selection via Reversible Jump, and student-t errors (from Geweke) is also provided

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Package maptools updated to version 0.7-23 with previous version 0.7-22 dated 2009-04-14

Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko, Stéphane Dray, David Forrest, Patrick Giraudoux, Duncan Golicher, Virgilio Gómez Rubio, Patrick Hausmann, Thomas Jagger, Sebastian P. Luque, Don MacQueen, Andrew Niccolai and Tom Short
Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data, in particular ESRI shapefiles; C code used from shapelib. It includes binary access to GSHHS shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as PBSmapping, spatstat, maps, RArcInfo, Stata tmap, WinBUGS, Mondrian, and others.

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Package dlm updated to version 1.0-1 with previous version 1.0-0 dated 2009-04-15

Author: Giovanni Petris
Title: Bayesian and Likelihood Analysis of Dynamic Linear Models
Description: Maximum likelihood, Kalman filtering and smoothing, and Bayesian analysis of Normal linear State Space models, also known as Dynamic Linear Models

Diff between dlm versions 1.0-0 dated 2009-04-15 and 1.0-1 dated 2009-05-27

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Package clim.pact updated to version 2.2-35 with previous version 2.2-34 dated 2009-04-17

Author: Rasmus E. Benestad
Title: Climate analysis and empirical-statistical downscaling (ESD) package for monthly and daily data.
Description: The package contains R functions for retrieving data, making climate analysis and downscaling of monthly mean and daily mean global climate scenarios. (Windows-users may need to obtain the 'ncdf' package from URL 'http://www.stats.ox.ac.uk/pub/RWin/' to get clim.pact to work). The package is also described in the book 'Empirical-Statistical Downscaling (http://www.worldscibooks.com/environsci/6908.html)

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 DESCRIPTION     |    8 ++++----
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 R/getnordklim.R |    2 +-
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Package binom updated to version 1.0-5 with previous version 1.0-4 dated 2008-10-05

Author: Sundar Dorai-Raj
Title: Binomial Confidence Intervals For Several Parameterizations
Description: Constructs confidence intervals on the probability of success in a binomial experiment via several parameterizations

Diff between binom versions 1.0-4 dated 2008-10-05 and 1.0-5 dated 2009-05-27

 DESCRIPTION        |   24 ++++++++++++++----------
 man/binom.optim.Rd |    2 --
 2 files changed, 14 insertions(+), 12 deletions(-)

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Package SQLiteDF updated to version 0.1.34 with previous version 0.1.32 dated 2009-02-17

Author: Miguel A. R. Manese
Title: Stores data frames & matrices in SQLite tables
Description: Transparently stores data frames & matrices into SQLite tables.

Diff between SQLiteDF versions 0.1.32 dated 2009-02-17 and 0.1.34 dated 2009-05-27

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Package ReadImages updated to version 0.1.2 with previous version 0.1.1 dated 2009-05-19

Author: Markus Loecher
Title: Image Reading Module for R
Description: This package provides functions for reading JPEG and PNG files. This package requires libjpeg . This package can be used on Unixes / MacOS X / Windows.

Diff between ReadImages versions 0.1.1 dated 2009-05-19 and 0.1.2 dated 2009-05-27

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New package IsoGene with initial version 1.0-13
Package: IsoGene
Type: Package
Title: Testing for monotonic relationship between gene expression and doses in a microarray experiment.
Version: 1.0-13
Date: 2008-09-09
Author: Lin et al.
Maintainer: Dan Lin
Description: Several testing procedures including the global likelihood ratio test (Bartholomew, 1961), Williams (1971, 1972), Marcus (1976), M (Hu et al. 2005) and the modified M (Lin et al. 2007) are used to test for the monotonic trend in gene expression with respect to doses. BH (Benjamini and Hochberg 1995) and BY (Benjamini and Yekutilie 2004) FDR controlling procedures are applied to adjust the raw p-values obtained from the permutations.
Depends: ff(>= 2.0.0)
License: GPL-2
Repository: CRAN
Repository/R-Forge/Project: isogene
Repository/R-Forge/Revision: 87
Date/Publication: 2009-05-26 17:56:01
Packaged: 2009-05-26 02:54:58 UTC; rforge

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Package ICSNP updated to version 1.0-4 with previous version 1.0-3 dated 2009-04-22

Author: Klaus Nordhausen, Seija Sirkia, Hannu Oja, David E. Tyler
Title: Tools for Multivariate Nonparametrics
Description: Tools for multivariate nonparametrics, as location tests based on marginal ranks, spatial median and spatial signs computation, Hotelling's T-test, estimates of shape

Diff between ICSNP versions 1.0-3 dated 2009-04-22 and 1.0-4 dated 2009-05-27

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Package DoE.base updated to version 0.2 with previous version 0.1 dated 2009-05-25

Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE packages
Description: This package creates full factorial experiments and experiments based on orthogonal arrays for (industrial) experiments. Additionally, it provides some utility functions used also by other DoE packages.

Diff between DoE.base versions 0.1 dated 2009-05-25 and 0.2 dated 2009-05-27

 DESCRIPTION          |    8 ++++----
 R/export.design.R    |   27 ++++++++++++++++++++++-----
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New package Haplin with initial version 3.0.1
Package: Haplin
Type: Package
Title: Analyzing case-parent triad and/or case-control data with SNP haplotypes
Version: 3.0.1
Date: 2009-05-25
Author: Håkon K. Gjessing
Maintainer: Håkon K. Gjessing
Depends: MASS, mgcv
Description: Haplin performs a genetic association analysis of case-parent triad (trio) data with multiple markers. It can also incorporate complete or incomplete control triads, for instance independent control children. Estimation is based on haplotypes, for instance SNP haplotypes, even though phase is not known from the genetic data. Haplin estimates relative risk (RR + conf.int.) and p-value associated with each haplotype. It uses maximum likelihood estimation to make optimal use of data from triads with missing genotypic data, for instance if some SNPs has not been typed for some individuals. Haplin also allows estimation of effects of maternal haplotypes, particularly appropriate in perinatal epidemiology.
License: GPL (>= 2)
URL: http://www.uib.no/smis/gjessing/genetics/software/haplin/
Encoding: latin1
Packaged: 2009-05-27 08:33:08 UTC; hkgjess
Repository: CRAN
Date/Publication: 2009-05-27 08:58:57

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Package ADaCGH updated to version 1.3-13 with previous version 1.3-10 dated 2009-01-11

Author: Ramon Diaz-Uriarte , Oscar M. Rueda . Wavelet-based aCGH smoothing code from Li Hsu and Douglas Grove . Imagemap code from Barry Rowlingson . HaarSeg code from Erez Ben-Yaacov; downloaded from
Title: Analysis of data from aCGH experiments
Description: Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), , ACE method (CGH Explorer), HMM, BioHMM, GLAD, CGHseg, and Price's modification of Smith & Waterman's algorith. Most computations are parallelized. Figures are imagemaps with links to IDClight (http://idclight.bioinfo.cnio.es).

Diff between ADaCGH versions 1.3-10 dated 2009-01-11 and 1.3-13 dated 2009-05-27

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Mon, 25 May 2009

Package seacarb updated to version 2.1.2 with previous version 2.1 dated 2009-04-22

Author: Heloise Lavigne and Aurelien Proye and Jean-Pierre Gattuso. Portions of code and/or corrections were contributed by Jean-Marie Epitalon, Andreas Hofmann, Bernard Gentili, Jim Orr and Karline Soetaert
Title: Calculates parameters of the seawater carbonate system
Description: Calculates parameters of the seawater carbonate system

Diff between seacarb versions 2.1 dated 2009-04-22 and 2.1.2 dated 2009-05-25

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Package psych updated to version 1.0-70 with previous version 1.0-67 dated 2009-03-27

Author: William Revelle
Title: Procedures for Psychological, Psychometric, and Personality Research
Description: A number of routines for personality, psychometrics and experimental psychology. Functions are primarily for scale construction using factor analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Functions for simulating particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. For more information, see the personality-project.org/r webpage.

Diff between psych versions 1.0-67 dated 2009-03-27 and 1.0-70 dated 2009-05-25

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Package mvgraph updated to version 1.1 with previous version 1.0 dated 2009-03-27

Author: Moritz Gschwandtner
Title: Multivariate, Interactive Visualization
Description: This package offers different possibilities to visualize multivariate data

Diff between mvgraph versions 1.0 dated 2009-03-27 and 1.1 dated 2009-05-25

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Package fSeries updated to version 270.76.3 with previous version 270.76.2 dated 2009-04-16

Author: Diethelm Wuertz and many others, see the SOURCE file
Title: Financial Time Series Objects
Description: Environment for teaching "Financial Engineering and Computational Finance"

Diff between fSeries versions 270.76.2 dated 2009-04-16 and 270.76.3 dated 2009-05-25

 ChangeLog   |    5 +++++
 DESCRIPTION |   10 +++++-----
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 3 files changed, 15 insertions(+), 10 deletions(-)

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Package fCalendar updated to version 270.78.3 with previous version 270.78.2 dated 2009-04-16

Author: Diethelm Wuertz, Yohan Chalabi
Title: Chronological and Calendarical Objects
Description: Environment for teaching "Financial Engineering and Computational Finance"

Diff between fCalendar versions 270.78.2 dated 2009-04-16 and 270.78.3 dated 2009-05-25

 ChangeLog   |    5 +++++
 DESCRIPTION |   10 +++++-----
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 3 files changed, 15 insertions(+), 10 deletions(-)

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Package Matrix updated to version 0.999375-27 with previous version 0.999375-26 dated 2009-04-29

Author: Douglas Bates and Martin Maechler
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and operations on them using Lapack and SuiteSparse.

Diff between Matrix versions 0.999375-26 dated 2009-04-29 and 0.999375-27 dated 2009-05-25

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 DESCRIPTION                |   10 
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Package MLDS updated to version 0.1-8 with previous version 0.1-7 dated 2009-01-17

Author: Kenneth Knoblauch and Laurence T. Maloney, based in part on C code written by Laurence T. Maloney and J. N. Yang
Title: Maximum Likelihood Difference Scaling
Description: Difference scaling is a method for scaling perceived supra-threshold differences. The package contains functions that allow the user to design and run a difference scaling experiment, to fit the resulting data by maximum likelihood and test the internal validity of the estimated scale.

Diff between MLDS versions 0.1-7 dated 2009-01-17 and 0.1-8 dated 2009-05-25

 DESCRIPTION             |   23 ++++++++++++-----------
 R/boot.mlds.R           |   14 +++++++++-----
 R/runSampleExperiment.R |   21 ++++++++++++---------
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Package FrF2 updated to version 0.93 with previous version 0.92-5 dated 2009-05-18

Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional Factorial designs. Furthermore, analysis tools for Fractional Factorial designs with 2-level factors are offered (main effects and interaction plots for all factors simultaneously, cube plot for looking at the simultaneous effects of three factors, full or half normal plot, alias structure in a more readable format than with the built-in function alias). The package is currently subject to intensive development. While much of the intended functionality is already available, some changes and improvements are still to be expected. Suggestions are welcome.

Diff between FrF2 versions 0.92-5 dated 2009-05-18 and 0.93 dated 2009-05-25

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New package mcclust with initial version 1.0
Package: mcclust
Type: Package
Title: Process an MCMC Sample of Clusterings
Version: 1.0
Date: 2009-05-22
Author: Arno Fritsch
Depends: lpSolve
Maintainer: Arno Fritsch
Description: Implements methods for processing a sample of (hard) clusterings, e.g. the MCMC output of a Bayesian clustering model. Among them are methods that find a single best clustering to represent the sample, which are based on the posterior similarity matrix or a relabelling algorithm.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2009-05-25 07:24:22 UTC; fritsch
Repository: CRAN
Date/Publication: 2009-05-25 19:08:35

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New package DoE.base with initial version 0.1
Package: DoE.base
Title: Full factorials, orthogonal arrays and base utilities for DoE packages
Version: 0.1
Depends: R(>= 2.7.1)
Date: 2009-05-24
Author: Ulrike Groemping
Maintainer: Ulrike Groemping
Description: This package creates full factorial experiments and experiments based on orthogonal arrays for (industrial) experiments. Additionally, it provides some utility functions used also by other DoE packages.
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Encoding: latin1
Packaged: Mon May 25 11:49:13 2009; Grömping
Repository: CRAN
Date/Publication: 2009-05-25 19:08:29

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Package RcmdrPlugin.HH updated to version 1.1-24 with previous version 1.1-21 dated 2009-01-04

Author: Richard M. Heiberger, with contributions from Burt Holland.
Title: Rcmdr support for the HH package
Description: Rcmdr menu support for many of the functions in the HH package. The focus is on menu items for functions we use in our introductory courses.

Diff between RcmdrPlugin.HH versions 1.1-21 dated 2009-01-04 and 1.1-24 dated 2009-05-25

 DESCRIPTION                      |   35 +++++++++++++++++++----------------
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Package HH updated to version 2.1-28 with previous version 2.1-25 dated 2009-03-16

Author: Richard M. Heiberger
Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display (Springer, ISBN 0-387-40270-5). This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The authors demonstrate how to analyze data---showing code, graphics, and accompanying computer listings---for all the methods they cover. They emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises.

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Sun, 24 May 2009

Package sets updated to version 0.7 with previous version 0.6 dated 2009-02-10

Author: David Meyer and Kurt Hornik (with contributions by Christian Buchta)
Title: Sets, Generalized Sets, and Customizable Sets.
Description: Data structures and basic operations for ordinary sets, generalizations such as fuzzy sets, multisets, and fuzzy multisets, and customizable sets.

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Package proxy updated to version 0.4-3 with previous version 0.4-2 dated 2009-03-31

Author: David Meyer and Christian Buchta
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the effcient calculation of auto- and cross-proximities, along with implementations of the most popular ones.

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Package eba updated to version 1.5-3 with previous version 1.5-2 dated 2008-10-30

Author: Florian Wickelmaier
Title: Elimination-By-Aspects (EBA) Models
Description: Fitting and testing multi-attribute probabilistic choice models, especially the Bradley-Terry-Luce (BTL) model (Bradley & Terry, 1952; Luce, 1959), elimination-by-aspects (EBA) models (Tversky, 1972), and preference tree (Pretree) models (Tversky & Sattath, 1979).

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Package DAAG updated to version 0.99-2 with previous version 0.99-1 dated 2009-05-14

Author: John Maindonald and W. John Braun
Title: Data Analysis And Graphics
Description: various data sets used in examples and exercises in the book Maindonald, J.H. and Braun, W.J. (2003, 2007) "Data Analysis and Graphics Using R".

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Package BayesTree updated to version 0.3-1 with previous version 0.2-0 dated 2006-10-17

Author: Hugh Chipman , Robert McCulloch
Title: Bayesian Methods for Tree Based Models
Description: Implementation of BART:Bayesian Additive Regression Trees, Chipman, George, McCulloch (2009)

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Package wgaim updated to version 0.2-2 with previous version 0.2 dated 2008-11-27

Author: Julian Taylor , Simon Diffey , Ari Verbyla and Brian Cullis .
Title: Whole Genome Average Interval Mapping for QTL detection using mixed models
Description: This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL's in linkage maps.

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Package rpart updated to version 3.1-44 with previous version 3.1-43 dated 2009-03-10

Author: Terry M Therneau and Beth Atkinson . R port by Brian Ripley.
Title: Recursive Partitioning
Description: Recursive partitioning and regression trees

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Package rbounds updated to version 0.3 with previous version 0.2 dated 2009-01-28

Author: Luke J. Keele
Title: Perform Rosenbaum bounds sensitivity tests for matched data.
Description: Takes matched data and calculates Rosenbaum bounds for the treatment effect. Calculates bounds for binary data, Hodges-Lehmann point estimates, Wilcoxon signed-rank test, and for data with multiple matched controls. Is designed to work with the Matching package and operate on Match() objects.

Diff between rbounds versions 0.2 dated 2009-01-28 and 0.3 dated 2009-05-24

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Package plotrix updated to version 2.6 with previous version 2.5-5 dated 2009-05-04

Author: Jim Lemon,Ben Bolker,Sander Oom, Eduardo Klein,Barry Rowlingson, Hadley Wickham,Anupam Tyagi, Olivier Eterradossi,Gabor Grothendieck, Michael Toews,John Kane,Mike Cheetham, Rolf Turner,Carl Witthoft,Julian Stander, Thomas Petzoldt,Remko Duursma,Elisa Biancotto, Ofir Levy
Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling functions.

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Package playwith updated to version 0.9-44 with previous version 0.9-43 dated 2008-11-16

Author: Felix Andrews
Title: A GUI for interactive plots using GTK+
Description: A GTK+ graphical user interface for editing and interacting with R plots.

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Package picante updated to version 0.7-0 with previous version 0.6-1 dated 2009-03-19

Author: Steven Kembel , David Ackerly , Simon Blomberg , Peter Cowan , Matthew Helmus , Helene Morlon , Campbell Webb
Title: R tools for integrating phylogenies and ecology
Description: Phylocom integration, community analyses, null-models, traits and evolution in R

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New package pedigreemm with initial version 0.2-1
Package: pedigreemm
Version: 0.2-1
Date: 2009-05-19
Title: Pedigree-based mixed-effects models
Author: Douglas Bates and Ana Ines Vazquez
Maintainer: Ana Ines Vazquez
Description: Fit pedigree-based mixed-effects models.
Depends: methods, R(>= 2.8.1), lme4 (>= 0.999375-28), Matrix (>= 0.999375-22)
Imports: graphics, stats
LazyLoad: yes
LazyData: yes
License: GPL (>= 2)
URL: http://pedigreemm.r-forge.r-project.org/
Repository: CRAN
Repository/R-Forge/Project: pedigreemm
Repository/R-Forge/Revision: 93
Date/Publication: 2009-05-24 08:36:33
Packaged: 2009-05-21 03:40:04 UTC; rforge

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Package packClassic updated to version 0.5.1 with previous version 0.5 dated 2008-09-19

Author: Author: Christophe Genolini (and some helpfull readers...)
Title: Toy Pack Classic
Description: This package comes to illustrate the book "Petit Manuel de Programmation Orientee Objet sous R"

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Package nlme updated to version 3.1-92 with previous version 3.1-91 dated 2009-05-04

Author: Jose Pinheiro , Douglas Bates , Saikat DebRoy , Deepayan Sarkar , the R Core team.
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.

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Package mvtnorm updated to version 0.9-7 with previous version 0.9-5 dated 2009-03-17

Author: Alan Genz, Frank Bretz, Tetsuhisa Miwa, Xuefei Mi, Friedrich Leisch, Fabian Scheipl, Torsten Hothorn
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles, random deviates and densities.

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Package modeest updated to version 1.09 with previous version 1.06 dated 2007-03-30

Author: Paul PONCET
Title: Mode Estimation
Description: This package provides estimators of the mode of univariate unimodal data or univariate unimodal distributions. It also enables to compute the Chernoff distribution.

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Package lpc updated to version 1.0.1 with previous version 1.0 dated 2008-06-11

Author: Daniela M Witten and Robert Tibshirani
Title: Lassoed principal components for testing significance of features
Description: Implements the LPC method of Witten&Tibshirani(2008) for identification of significant genes in a microarray experiment.

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Package lme4 updated to version 0.999375-31 with previous version 0.999375-30 dated 2009-05-12

Author: Douglas Bates and Martin Maechler
Title: Linear mixed-effects models using S4 classes
Description: Fit linear and generalized linear mixed-effects models.

Diff between lme4 versions 0.999375-30 dated 2009-05-12 and 0.999375-31 dated 2009-05-24

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Package ghyp updated to version 1.5.1 with previous version 1.5.0 dated 2008-11-27

Author: Wolfgang Breymann, David Luethi
Title: A package on the generalized hyperbolic distribution and its special cases
Description: This package provides detailed functionality for working with the univariate and multivariate Generalized Hyperbolic distribution and its special cases (Hyperbolic (hyp), Normal Inverse Gaussian (NIG), Variance Gamma (VG), skewed Student-t and Gaussian distribution). Especially, it contains fitting procedures, an AIC-based model selection routine, and functions for the computation of density, quantile, probability, random variates, expected shortfall and some portfolio optimization and plotting routines as well as the likelihood ratio test. In addition, it contains the Generalized Inverse Gaussian distribution.

Diff between ghyp versions 1.5.0 dated 2008-11-27 and 1.5.1 dated 2009-05-24

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New package flubase with initial version 1.0
Package: flubase
Type: Package
Title: Baseline of mortality free of influenza epidemics
Version: 1.0
Date: 2009-02-23
Author: Nunes B, Natario I and Carvalho L
Maintainer: Baltazar Nunes
Depends: R (>= 2.7), forecast, FinTS
Description: This function estimates the baseline of mortality free of influenza epidemics, and the respective excess deaths, for more than one time series (age groups, gender, regions, etc)using one of the four methods available.
License: GPL (>= 2)
Packaged: Wed May 20 18:08:49 2009; Balta
Repository: CRAN
Date/Publication: 2009-05-24 08:49:23

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Package epiR updated to version 0.9-16 with previous version 0.9-15 dated 2009-03-31

Author: Mark Stevenson with contributions from Telmo Nunes, Javier Sanchez, and Ron Thornton.
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, and computing confidence intervals around incidence risk and incidence rate estimates. Miscellaneous functions for use in meta-analysis, diagnostic test interpretation, and sample size calculations.

Diff between epiR versions 0.9-15 dated 2009-03-31 and 0.9-16 dated 2009-05-24

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Package colorRamps updated to version 2.3 with previous version 2.2 dated 2008-07-05

Author: Tim Keitt
Title: Builds color tables
Description: Builds gradient color maps

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Package caret updated to version 4.16 with previous version 4.15 dated 2009-05-13

Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre Williams and Chris Keefer
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and regression models

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Package TeachingSampling updated to version 0.8.1 with previous version 0.7.6 dated 2009-03-14

Author: Hugo Andres Gutierrez Rojas
Title: Sampling designs and parameter estimation in finite population
Description: Foundations of inference in survey sampling

Diff between TeachingSampling versions 0.7.6 dated 2009-03-14 and 0.8.1 dated 2009-05-24

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Package TRAMPR updated to version 1.0-5 with previous version 1.0-4 dated 2007-06-05

Author: Rich FitzJohn & Ian Dickie
Title: TRFLP Analysis and Matching Package for R
Description: TRAMPR is an R package for matching terminal restriction fragment length polymorphism (TRFLP) profiles between unknown samples and a database of knowns. TRAMPR facilitates analysis of many unknown profiles at once, and provides tools for working directly with electrophoresis output through to generating summaries suitable for community analyses with R's rich set of statistical functions. TRAMPR also resolves the issues of multiple TRFLP profiles within a species, and shared TRFLP profiles across species.

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Package SpectralGEM updated to version 0.2 with previous version 0.1 dated 2009-03-15

Author: Ann Lee, Diana Luca, Bert Klei, Bernie Devlin, Kathryn Roeder
Title: Discovering Genetic Ancestry Using Spectral Graph Theory
Description: Discovering Genetic Ancestry Using Spectral Graph Theory

Diff between SpectralGEM versions 0.1 dated 2009-03-15 and 0.2 dated 2009-05-24

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Package PSM updated to version 0.8-5 with previous version 0.8-4 dated 2009-02-25

Author: Stig Bousgaard Mortensen and Søren Klim
Title: Non-Linear Mixed-Effects modelling using Stochastic Differential Equations.
Description: This package provides functions for estimation of linear and non-linear mixed-effects models using stochastic differential equations. Moreover it provides functions for finding smoothed estimates of model states and for simulation. The package allows for any multivariate non-linear time-variant model to be specified, and it also handels multidimentional input, co-variates, missing observations and specification of dosage regimen.

Diff between PSM versions 0.8-4 dated 2009-02-25 and 0.8-5 dated 2009-05-24

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Package NADA updated to version 1.5-2 with previous version 1.5-1 dated 2007-09-27

Author: Lopaka Lee
Title: Nondetects And Data Analysis for environmental data
Description: Contains methods described by Dennis R. Helsel in his book "Nondetects And Data Analysis: Statistics for Censored Environmental Data"

Diff between NADA versions 1.5-1 dated 2007-09-27 and 1.5-2 dated 2009-05-24

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Package KernSmooth updated to version 2.23-2 with previous version 2.23-1 dated 2009-05-05

Author: S original by Matt Wand. R port by Brian Ripley .
Title: Functions for kernel smoothing for Wand & Jones (1995)
Description: functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) "Kernel Smoothing".

Diff between KernSmooth versions 2.23-1 dated 2009-05-05 and 2.23-2 dated 2009-05-24

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Package HTMLUtils updated to version 0.1.1 with previous version 0.1 dated 2009-05-20

Author: Markus Loecher, Sense Networks
Title: Facilitates automated HTML report creation
Description: Facilitates automated HTML report creation, in particular framed HTML pages and dynamically sortable tables.

Diff between HTMLUtils versions 0.1 dated 2009-05-20 and 0.1.1 dated 2009-05-24

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Thu, 21 May 2009

Package zoo updated to version 1.5-6 with previous version 1.5-5 dated 2009-02-05

Author: Achim Zeileis, Gabor Grothendieck
Title: Z's ordered observations
Description: An S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time series of numeric vectors/matrices and factors. zoo's key design goals are independence of a particular index/date/time class and consistency with with ts and base R by providing methods to extend standard generics.

Diff between zoo versions 1.5-5 dated 2009-02-05 and 1.5-6 dated 2009-05-21

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Package AER updated to version 1.1-3 with previous version 1.1-2 dated 2009-03-19

Author: Christian Kleiber, Achim Zeileis
Title: Applied Econometrics with R
Description: Functions, data sets, examples, demos, and vignettes for the book Christian Kleiber and Achim Zeileis (2008), Applied Econometrics with R, Springer-Verlag, New York. ISBN 978-0-387-77316-2. (See the vignette for a package overview.)

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Wed, 20 May 2009

Package spls updated to version 1.1-0 with previous version 1.0-3 dated 2009-01-26

Author: Dongjun Chung , Hyonho Chun , Sunduz Keles
Title: Sparse Partial Least Squares (SPLS) Regression and Classification
Description: This package provides functions for fitting a Sparse Partial Least Squares Regression and Classification

Diff between spls versions 1.0-3 dated 2009-01-26 and 1.1-0 dated 2009-05-20

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Package taskPR updated to version 0.34 with previous version 0.31 dated 2008-03-13

Author: Nagiza F. Samatova , David Bauer , Srikanth Yoginath
Title: Task-Parallel R Package
Description: The Task-Parallel R ("task-pR") system, repackaged as an R package

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Package ez updated to version 1.3 with previous version 1.2 dated 2009-05-18

Author: Michael A. Lawrence
Title: Easy analysis and visualization of factorial experiments.
Description: This package facilitates easy analysis of factorial experiments, including purely within-Ss designs (a.k.a. "repeated measures"), purely between-Ss designs, and mixed within-and-between-Ss designs. The functions in this package provide easy access to descriptive statistics, ANOVA, permutation tests, and visualization of results.

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Package RgoogleMaps updated to version 1.1.2 with previous version 1.1.1 dated 2009-05-15

Author: Markus Loecher, Sense Networks
Title: Overlays on Google map tiles in R
Description: This package serves two purposes: (i) Provide a comfortable R interface to query the Google server for static maps, and (ii) Use the map as a background image to overlay plots within R. This requires proper coordinate scaling.

Diff between RgoogleMaps versions 1.1.1 dated 2009-05-15 and 1.1.2 dated 2009-05-20

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New package HTMLUtils with initial version 0.1
Package: HTMLUtils
Type: Package
Title: Facilitates automated HTML report creation
Version: 0.1
Date: 2009-02-26
Depends: GDD, R2HTML, Cairo
Author: Markus Loecher, Sense Networks
Maintainer: Markus Loecher, Sense Networks
Description: Facilitates automated HTML report creation, in particular framed HTML pages and dynamically sortable tables.
License: GPL
LazyLoad: yes
Packaged: Tue May 19 21:06:58 2009; markus
Repository: CRAN
Date/Publication: 2009-05-20 06:55:37

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Tue, 19 May 2009

Package scrime updated to version 1.1.6 with previous version 1.1.4 dated 2009-05-11

Author: Holger Schwender, Arno Fritsch
Title: Analysis of High-Dimensional Categorical Data such as SNP Data
Description: Tools for the analysis of high-dimensional data developed/implemented at the group "Statistical Complexity Reduction In Molecular Epidemiology" (SCRIME). Main focus is on SNP data. But most of the functions can also be applied to other types of categorical data.

Diff between scrime versions 1.1.4 dated 2009-05-11 and 1.1.6 dated 2009-05-19

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Package optmatch updated to version 0.5-0 with previous version 0.4-1 dated 2008-07-05

Author: Ben B. Hansen , with embedded Fortran code due to Dimitri P. Bertsekas and Paul Tseng and with contributions from Mark Fredrickson
Title: Functions for optimal matching
Description: Functions for optimal matching, including full matching

Diff between optmatch versions 0.4-1 dated 2008-07-05 and 0.5-0 dated 2009-05-19

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Package ensembleBMA updated to version 4.2.2 with previous version 4.2.1 dated 2009-05-10

Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann Gneiting, University of Washington With contributions from Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts from ensemble forecasts and weather observations.

Diff between ensembleBMA versions 4.2.1 dated 2009-05-10 and 4.2.2 dated 2009-05-19

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Package bethel updated to version 0.2 with previous version 0.1 dated 2009-03-27

Author: Michele De Meo
Title: Bethel's algorithm.
Description: The sample size according to the Bethel's procedure.

Diff between bethel versions 0.1 dated 2009-03-27 and 0.2 dated 2009-05-19

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Package proptest updated to version 0.1-4 with previous version 0.1-3 dated 2008-02-28

Author: David Kraus
Title: Tests of the Proportional Hazards Assumption
Description: Tests of the proportional hazards assumption in the Cox model: data-driven Neyman type smooth tests and score process based tests for identifying nonproportional covariates and for global checks.

Diff between proptest versions 0.1-3 dated 2008-02-28 and 0.1-4 dated 2009-05-19

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Package plspm updated to version 0.1-3 with previous version 0.1-2 dated 2009-05-10

Author: Gaston Sanchez
Title: Partial Least Squares data analysis methods
Description: Partial Least Squares (PLS) methods with emphasis on structural equation models with latent variables.

Diff between plspm versions 0.1-2 dated 2009-05-10 and 0.1-3 dated 2009-05-19

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New package ReadImages with initial version 0.1.1
Package: ReadImages
Version: 0.1.1
Date: 2009-05-18
Title: Image Reading Module for R
Author: Markus Loecher
Maintainer: Markus Loecher
Depends: R (>= 1.6)
Description: This package provides functions for reading JPEG and PNG files. This package requires libjpeg . This package can be used on Unixes / MacOS X / Windows.
License: BSD
Packaged: Tue May 19 05:37:57 2009; markus
Repository: CRAN
Date/Publication: 2009-05-19 16:05:18

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Package amap updated to version 0.8-3 with previous version 0.8-2 dated 2007-10-03

Author: Antoine Lucas
Title: Another Multidimensional Analysis Package
Description: Tools for Clustering and Principal Component Analysis (With robusts methods, and parallelized functions).

Diff between amap versions 0.8-2 dated 2007-10-03 and 0.8-3 dated 2009-05-19

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Mon, 18 May 2009

Package epibasix updated to version 1.1 with previous version 0.1 dated 2007-10-16

Author: Michael A Rotondi
Title: Elementary Epidemiological Functions for a Graduate Epidemiology\Biostatistics Course
Description: This package contains elementary tools for analysis of common epidemiological problems, ranging from sample size estimation, through 2x2 contingency table analysis and basic measures of agreement (kappa, sensitivity/specificity). Appropriate print and summary statements are also written to facilitate interpretation wherever possible. This package is a work in progress, so any comments or suggestions would be appreciated. Source code is commented throughout to facilitate modification. The target audience includes graduate students in various epi/biostatistics courses.

Diff between epibasix versions 0.1 dated 2007-10-16 and 1.1 dated 2009-05-18

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Package RGtk2 updated to version 2.12.11 with previous version 2.12.10 dated 2009-03-26

Author: Michael Lawrence and Duncan Temple Lang
Title: R bindings for Gtk 2.8.0 and above
Description: Facilities in the R language for programming graphical interfaces using Gtk, the Gimp Tool Kit.

Diff between RGtk2 versions 2.12.10 dated 2009-03-26 and 2.12.11 dated 2009-05-18

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Package survey updated to version 3.15 with previous version 3.14 dated 2009-04-15

Author: Thomas Lumley
Title: analysis of complex survey samples
Description: Summary statistics, generalised linear models, Cox models, loglinear models, and general maximum pseudolikelihood estimation for multistage stratified, cluster-sampled, unequally weighted survey samples. Variances by Taylor series linearisation or replicate weights. Post-stratification, calibration, and raking. Two-phase designs. Graphics. Predictive margins by direct standardization.

Diff between survey versions 3.14 dated 2009-04-15 and 3.15 dated 2009-05-18

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New package odfWeave.survey with initial version 1.0
Package: odfWeave.survey
Type: Package
Title: Support for odfWeave on the survey package
Version: 1.0
Date: 2009-05-14
Author: Thomas Lumley
Maintainer: Thomas Lumley
Description: Provides methods for odfTable() for objects in the survey package.
Depends: odfWeave, survey
License: GPL-2
LazyLoad: yes
Packaged: 2009-05-18 17:10:55 UTC; tlumley
Repository: CRAN
Date/Publication: 2009-05-18 17:31:14

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Package FrF2 updated to version 0.92-5 with previous version 0.92-4 dated 2009-05-15

Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional Factorial designs. Furthermore, analysis tools for Fractional Factorial designs with 2-level factors are offered (main effects and interaction plots for all factors simultaneously, cube plot for looking at the simultaneous effects of three factors, full or half normal plot, alias structure in a more readable format than with the built-in function alias). The package is currently subject to intensive development. While much of the intended functionality is already available, some changes and improvements are still to be expected. Suggestions are welcome.

Diff between FrF2 versions 0.92-4 dated 2009-05-15 and 0.92-5 dated 2009-05-18

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Package Design updated to version 2.2-0 with previous version 2.1-2 dated 2008-11-04

Author: Frank E Harrell Jr
Title: Design Package
Description: Regression modeling, testing, estimation, validation, graphics, prediction, and typesetting by storing enhanced model design attributes in the fit. Design is a collection of about 180 functions that assist and streamline modeling, especially for biostatistical and epidemiologic applications. It also contains new functions for binary and ordinal logistic regression models and the Buckley-James multiple regression model for right-censored responses, and implements penalized maximum likelihood estimation for logistic and ordinary linear models. Design works with almost any regression model, but it was especially written to work with logistic regression, Cox regression, accelerated failure time models, ordinary linear models, the Buckley-James model, and generalized least squares for serially or spatially correlated observations.

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Package ez updated to version 1.2 with previous version 1.1 dated 2009-04-27

Author: Michael A. Lawrence
Title: Easy analysis and visualization of factorial experiments.
Description: This package facilitates easy analysis of factorial experiments, including purely within-Ss designs (a.k.a. "repeated measures"), purely between-Ss designs, and mixed within-and-between-Ss designs. The functions in this package provide easy access to descriptive statistics, ANOVA, permutation tests, and visualization of results.

Diff between ez versions 1.1 dated 2009-04-27 and 1.2 dated 2009-05-18

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New package binomSamSize with initial version 0.1-1
Package: binomSamSize
Type: Package
Title: Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling
Version: 0.1-1
Date: 2009-05-17
Author: Michael Hoehle with contributions by Wei Liu
Maintainer: Michael Hoehle
Depends: binom
Description: A suite of functions to compute confidence intervals and necessary sample sizes for the parameter p of the Bernoulli B(p) distribution under simple random sampling or under pooled sampling. Such computations are e.g. of interest when investigating the incidence or prevalence in populations. The package contains functions to compute coverage probabilities and coverage coefficients of the provided confidence intervals procedures. Sample size calculations are based on expected length.
License: GPL-3
LazyLoad: yes
Encoding: latin1
Packaged: 2009-05-17 18:23:54 UTC; hoehle
Repository: CRAN
Date/Publication: 2009-05-18 10:17:02

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Package RCurl updated to version 0.95-1 with previous version 0.94-1 dated 2009-02-07

Author: Duncan Temple Lang
Title: HTTP request interface
Description: The package allows one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.

Diff between RCurl versions 0.94-1 dated 2009-02-07 and 0.95-1 dated 2009-05-18

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Package FSelector updated to version 0.17 with previous version 0.15 dated 2009-05-06

Author: Piotr Romanski
Title: Selecting attributes
Description: This package provides functions for selecting attributes from a given dataset. Attribute subset selection is the process of identifying and removing as much of the irrevelant and redundant information as possible.

Diff between FSelector versions 0.15 dated 2009-05-06 and 0.17 dated 2009-05-18

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Sun, 17 May 2009

Package topmodel updated to version 0.6.2 with previous version 0.6.1 dated 2009-01-12

Author: Wouter Buytaert
Title: Implementation of the hydrological model TOPMODEL in R
Description: An R implementation of the hydrological model TOPMODEL, based on the 1995 FORTRAN version by Keith Beven. This version is adapted from the C translation by Huidae Cho in implemented in GRASS GIS.

Diff between topmodel versions 0.6.1 dated 2009-01-12 and 0.6.2 dated 2009-05-17

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Package spcosa updated to version 0.1-3 with previous version 0.1-2 dated 2009-03-23

Author: D.J.J. Walvoort, D.J. Brus, and J.J. de Gruijter
Title: Spatial Coverage Sampling
Description: Spatial coverage sampling and random sampling from compact geographical strata created by k-means.

Diff between spcosa versions 0.1-2 dated 2009-03-23 and 0.1-3 dated 2009-05-17

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Package smacof updated to version 0.9-6 with previous version 0.9-5 dated 2009-03-10

Author: Jan de Leeuw, Patrick Mair
Title: smacof for Multidimensional Scaling.
Description: This package provides the following approaches of multidimensional scaling (MDS) based on stress minimization by means of majorization (smacof): Simple smacof on symmetric dissimilarity matrices, smacof for rectangular matrices (unfolding models), smacof with constraints on the configuration, three-way smacof for individual differences (including constraints for idioscal, indscal, and identity), and spherical smacof (primal and dual algorithm). Each of these approaches is implemented in a metric and nonmetric manner including primary, secondary, and tertiary approaches for tie handling.

Diff between smacof versions 0.9-5 dated 2009-03-10 and 0.9-6 dated 2009-05-17

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Package relaimpo updated to version 2.1-2 with previous version 2.1-1 dated 2009-05-15

Author: Ulrike Groemping, with contributions from Matthias Lehrkamp
Title: Relative importance of regressors in linear models
Description: relaimpo provides several metrics for assessing relative importance in linear models. These can be printed, plotted and bootstrapped. The recommended metric is lmg, which provides a decomposition of the model explained variance into non-negative contributions. There is a version of this package available that additionally provides a new and also recommended metric called pmvd. If you are a non-US user, you can download this extended version from Ulrike Groempings web site.

Diff between relaimpo versions 2.1-1 dated 2009-05-15 and 2.1-2 dated 2009-05-17

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New package dynGraph with initial version 0.99070509
Package: dynGraph
Type: Package
Title: Interactive visualization of dataframes and factorial planes
Version: 0.99070509
Date: 2009-05-07
Author: Julien Durand, Sebastien Le
Maintainer: Sebastien Le
Depends: R (>= 2.8.0), FactoMineR, rJava
Description: Interactive visualization of dataframes and factorial planes
License: GPL (>= 2)
Packaged: Fri May 15 23:11:47 2009; MacBook
Repository: CRAN
Date/Publication: 2009-05-17 16:21:59

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New package integrOmics with initial version 1.0
Package: integrOmics
Type: Package
Title: Integrate Omics data project
Version: 1.0
Date: 2009-05-16
Author: Sebastien Dejean, Ignacio Gonzalez and Kim-Anh Le Cao
Maintainer: Kim-Anh Le Cao
Description: The package supplies two efficients nethodologies: regularized CCA and sparse PLS to unravel relationships between two heterogeneous data sets coming from high throughput technologies, such as omics data such as transcriptomics, metabolomics or proteomics data, but also other large data sets. Both methodologies allow to integrate two data sets when the two types of variables are measured on the same observations (samples). rCCA is a regularized version of CCA to deal with the large number of variables. sPLS allows variables selection in a one step procedure and two frameworks are proposed: regression and canonical analysis. Graphical outputs are provided to help interpreting the results.
License: GPL (>= 2)
Packaged: 2009-05-15 23:26:10 UTC; k.lecao
Repository: CRAN
Date/Publication: 2009-05-17 16:22:01

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Fri, 15 May 2009

Package pomp updated to version 0.24-1 with previous version 0.23-6 dated 2009-05-10

Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes

Diff between pomp versions 0.23-6 dated 2009-05-10 and 0.24-1 dated 2009-05-15

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Package gstat updated to version 0.9-60 with previous version 0.9-59 dated 2009-02-04

Author: Edzer J. Pebesma and others
Title: geostatistical modelling, prediction and simulation
Description: variogram modelling; simple, ordinary and universal point or block (co)kriging, sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions.

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Package FrF2 updated to version 0.92-4 with previous version 0.92-2 dated 2009-05-07

Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional Factorial designs. Furthermore, analysis tools for Fractional Factorial designs with 2-level factors are offered (main effects and interaction plots for all factors simultaneously, cube plot for looking at the simultaneous effects of three factors, full or half normal plot, alias structure in a more readable format than with the built-in function alias). The package is currently subject to intensive development. While much of the intended functionality is already available, some changes and improvements are still to be expected. Suggestions are welcome.

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Package relaimpo updated to version 2.1-1 with previous version 2.1 dated 2008-08-12

Author: Ulrike Groemping, with contributions from Matthias Lehrkamp
Title: Relative importance of regressors in linear models
Description: relaimpo provides several metrics for assessing relative importance in linear models. These can be printed, plotted and bootstrapped. The recommended metric is lmg, which provides a decomposition of the model explained variance into non-negative contributions. There is a version of this package available that additionally provides a new and also recommended metric called pmvd. If you are a non-US user, you can download this extended version from Ulrike Groempings web site.

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Package plink updated to version 1.1-0 with previous version 1.0.0 dated 2009-04-19

Author: Jonathan P. Weeks
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute linking constants and conduct chain linking of unidimensional or multidimensional tests for multiple groups under a nonequivalent groups common item design. The unidimensional methods include the Mean/Mean, Mean/Sigma, Haebara, and Stocking-Lord methods for dichotomous (1PL, 2PL and 3PL) and/or polytomous (graded response, partial credit/generalized partial credit, nominal, and multiple-choice model) items. The multidimensional methods include the Reckase-Martineau method and extensions of the Haebara and Stocking-Lord method using a single dilation parameter, multiple dilation parameters, or the Oshima, Davey, & Lee approach for multidimensional extensions of all the unidimensional dichotomous and polytomous item response models. The package also includes functions for importing item and/or ability parameters from common IRT software and ploting item characteristic/category curves or surfaces and vector plots.

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Package mgcv updated to version 1.5-5 with previous version 1.5-4 dated 2009-05-04

Author: Simon Wood
Title: GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL
Description: Routines for GAMs and other generalized ridge regression with multiple smoothing parameter selection by GCV, REML or UBRE/AIC. Also GAMMs by REML or PQL. Includes a gam() function.

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Package lattice updated to version 0.17-25 with previous version 0.17-22 dated 2009-04-04

Author: Deepayan Sarkar
Title: Lattice Graphics
Description: Implementation of Trellis Graphics. See ?Lattice for a brief introduction

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Package actuar updated to version 1.0-2 with previous version 1.0-1 dated 2009-01-29

Author: Vincent Goulet, Sébastien Auclair, Christophe Dutang, Xavier Milhaud, Tommy Ouellet, Louis-Philippe Pouliot, Mathieu Pigeon
Title: Actuarial functions
Description: Additional actuarial science functionality, mostly in the fields of loss distributions, risk theory (including ruin theory), simulation of compound hierarchical models and credibility theory, for the moment.

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Package Rsge updated to version 0.6.3 with previous version 0.6.2 dated 2009-05-14

Author: Dan Bode
Title: Interface to the SGE Queuing System
Description: This package provides functions for using R with the SGE cluster/grid queuing system.

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Package RgoogleMaps updated to version 1.1.1 with previous version 1.1 dated 2009-05-13

Author: Markus Loecher, Sense Networks
Title: Overlays on Google map tiles in R
Description: This package serves two purposes: (i) Provide a comfortable R interface to query the Google server for static maps, and (ii) Use the map as a background image to overlay plots within R. This requires proper coordinate scaling.

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Package RSiteSearch updated to version 1.0-3 with previous version 0.1-5 dated 2009-05-04

Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: RSiteSearch
Description: Alternative interfaces to RSiteSearch

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Package NeatMap updated to version 0.2 with previous version 0.1 dated 2009-05-13

Author: Satwik Rajaram and Yoshi Oono
Title: Non-clustered heatmap alternatives
Description: NeatMap is a package to create heatmap like plots in 2 and 3 dimensions, without the need for cluster analysis. Like the heatmap, the plots created by NeatMap display both a dimensionally reduced representation of the data as well as the data itself. They are intended to be used in conjunction with dimensional reduction techniques such as PCA.

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Package MCMCglmm updated to version 1.10 with previous version 1.09 dated 2009-04-17

Author: Jarrod Hadfield
Title: MCMC Generalised Linear Mixed Models
Description: MCMC Generalised Linear Mixed Models

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Package GRRGI updated to version 1.1 with previous version 1.0 dated 2009-01-14

Author: Walter Resch with information from 'Measurement System Assessment Via Generalized Inference' by Michael Hamada and Sam Weerandi
Title: Gauge R and R Confidence Intervals
Description: Generates confidence intervals for the variance components for Gauge R and R data using ANOVA with the Satterthwaite approximation as well as the method of Generalized Inference.

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Package DescribeDisplay updated to version 0.2.0 with previous version 0.1.3 dated 2007-03-14

Author: Hadley Wickham , Di Cook , Andreas Buja , Barret Schloerke
Title: R interface to DescribeDisplay (GGobi plugin)
Description: Produce publication quality graphics from output of GGobi's describe display plugin

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Thu, 14 May 2009

Package Rsge updated to version 0.6.2 with previous version 0.6.1 dated 2008-12-10

Author: Dan Bode
Title: Interface to the SGE Queuing System
Description: This package provides functions for using R with the SGE cluster/grid queuing system.

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Package DAAG updated to version 0.99-1 with previous version 0.98 dated 2009-01-14

Author: John Maindonald and W. John Braun
Title: Data Analysis And Graphics
Description: various data sets used in examples and exercises in the book Maindonald, J.H. and Braun, W.J. (2003, 2007) "Data Analysis and Graphics Using R".

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New package tractor.base with initial version 1.0.5
Package: tractor.base
Version: 1.0.5
Date: 2009-05-13
Title: Basic functions for the TractoR (tractography with R) bundle
Author: Jon Clayden
Maintainer: Jon Clayden
Depends: R (>= 2.5.0)
Description: The tractor.base package consists of functions for working with magnetic resonance images. It can read and write image files stored in Analyze, NIfTI and DICOM formats (DICOM support is read only), generate images for use as regions of interest, and manipulate and visualise images.
License: GPL-2
URL: http://code.google.com/p/tractor/
Packaged: 2009-05-13 16:02:41 UTC; jon
Repository: CRAN
Date/Publication: 2009-05-14 06:58:55

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Package tlnise updated to version 1.0-1 with previous version 1.0 dated 2009-03-09

Author: S-PLUS original by Phil Everson; R port by Roger D. Peng
Title: Two-level normal independent sampling estimation
Description: Functions for two level normal models as described in Everson and Morris (2000). J. R. Statist. Soc. B, 62 prt 2, pp.399--412.

Diff between tlnise versions 1.0 dated 2009-03-09 and 1.0-1 dated 2009-05-14

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Package spatstat updated to version 1.15-3 with previous version 1.15-2 dated 2009-04-16

Author: Adrian Baddeley and Rolf Turner , with substantial contributions of code by Marie-Colette van Lieshout, Rasmus Waagepetersen, Kasper Klitgaard Berthelsen and Dominic Schuhmacher. Additional contributions by Ang Qi Wei, C. Beale, B. Biggerstaff, R. Bivand, F. Bonneu, J. Burgos, J.B. Chen, Y.C. Chin, M. de la Cruz, P.J. Diggle, S. Eglen, A. Gault, M. Genton, P. Grabarnik, C. Graf, J. Franklin, U. Hahn, M. Hering, M.B. Hansen, M. Hazelton, J. Heikkinen, K. Hornik, R. Ihaka, R. John-Chandran, D. Johnson, J. Laake, J. Mateu, P. McCullagh, X.C. Mi, J. Moller, L.S. Nielsen, E. Parilov, J. Picka, M. Reiter, B.D. Ripley, B. Rowlingson, J. Rudge, A. Sarkka, K. Schladitz, B.T. Scott, I.-M. Sintorn, M. Spiess, M. Stevenson, P. Surovy, B. Turlach, A. van Burgel, H. Wang and S. Wong.
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Contains functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, and pixel images. Point process models can be fitted to point pattern data. Cluster type models are fitted by the method of minimum contrast. Very general Gibbs point process models can be fitted to point pattern data using a function ppm similar to lm or glm. Models may include dependence on covariates, interpoint interaction and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Diff between spatstat versions 1.15-2 dated 2009-04-16 and 1.15-3 dated 2009-05-14

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Package extRemes updated to version 1.60 with previous version 1.59 dated 2009-01-27

Author: Eric Gilleland, Rick Katz, Greg Young
Title: Extreme value toolkit.
Description: Uses Stuart Coles' (Coles, Stewart, "An introduction to statistical modeling of extreme values", Springer-Verlag, London 2001) S-plus functions as ported to the R programming language (ismev) by Alec Stephenson (http://www.maths.lancs.ac.uk/~stephena/). This toolkit provides a Graphical User Interface (GUI) to ismev for pedagogical purposes.

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Package DEoptim updated to version 1.3-3 with previous version 1.3-0 dated 2008-12-04

Author: David Ardia
Title: Differential Evolution Optimization
Description: This package provides the DEoptim function which performs Differential Evolution Optimization (evolutionary algorithm).

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Wed, 13 May 2009

Package spc updated to version 0.3 with previous version 0.21 dated 2007-10-14

Author: Sven Knoth, ...
Title: Statistical Process Control
Description: Evaluation of control charts by means of the zero-state, steady-state ARL (Average Run Length). Setting up control charts for given in-control ARL and plotting of the related figures. The control charts under consideration are one- and two-sided EWMA, CUSUM, and Shiryaev-Roberts schemes for monitoring the mean of normally distributed independent data. Now, the ARL calculation of the same set of schemes under drift are added. Other charts and parameters are in preparation. Further SPC areas will be covered as well (sampling plans, capability indices ...).

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New package pegas with initial version 0.1
Package: pegas
Version: 0.1
Date: 2009-05-10
Title: Population and Evolutionary Genetics Analysis System
Author: Emmanuel Paradis
Maintainer: Emmanuel Paradis
Depends: R (>= 2.6.0), ape, adegenet
ZipData: no
Description: pegas provides functions for reading, writing, plotting, analysing, and manipulating allelic data
License: GPL (>= 2)
URL: http://ape.mpl.ird.fr/pegas/pegas.html
Packaged: Wed May 13 10:16:56 2009; paradis
Repository: CRAN
Date/Publication: 2009-05-13 19:17:22

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Package cluster updated to version 1.12.0 with previous version 1.11.13 dated 2009-03-31

Author: Martin Maechler, based on S original by Peter Rousseeuw , Anja.Struyf@uia.ua.ac.be and Mia.Hubert@uia.ua.ac.be, and initial R port by Kurt.Hornik@R-project.org
Title: Cluster Analysis Extended Rousseeuw et al.
Description: Cluster Analysis, extended original from Peter Rousseeuw, Anja Struyf and Mia Hubert.

Diff between cluster versions 1.11.13 dated 2009-03-31 and 1.12.0 dated 2009-05-13

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Package caret updated to version 4.15 with previous version 4.12 dated 2009-05-08

Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre Williams and Chris Keefer
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and regression models

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Package ZIGP updated to version 3.5 with previous version 3.4 dated 2009-04-20

Author: Vinzenz Erhardt
Title: Zero Inflated Generalized Poisson (ZIGP) regression models
Description: Fit, analyze and compare GP, ZIP and ZIGP regression models

Diff between ZIGP versions 3.4 dated 2009-04-20 and 3.5 dated 2009-05-13

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Package TraMineR updated to version 1.2-1 with previous version 1.2 dated 2009-04-15

Author: Alexis Gabadinho , Matthias Studer , Nicolas S. Muller , Gilbert Ritschard .
Title: Sequences and trajectories mining for social scientists
Description: This package is a toolbox for sequence manipulation, description, rendering and more generally sequence data mining in the field of social sciences. Though it is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers its features apply indeed also to many other kinds of categorical sequence data. It accepts as input many different sequence representations and provides tools for translating sequences from one format to another. It offers several statistical functions for describing and rendering sequences, for computing distances between sequences with different metrics among which optimal matching, the longest common prefix and the longest common subsequence, and simple functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on TraMineR's web page.

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New package FRB with initial version 1.4
Package: FRB
Type: Package
Title: Fast and Robust Bootstrap
Version: 1.4
Date: 2009-05-07
Author: Ella Roelant, Stefan Van Aelst, Gert Willems
Maintainer: Gert Willems
Depends: corpcor
Description: This package performs robust inference based on applying Fast and Robust Bootstrap on robust estimators. Available methods are multivariate regression, PCA and Hotelling tests.
License: GPL-2
Packaged: 2009-05-13 10:58:02 UTC; gewillem
Repository: CRAN
Date/Publication: 2009-05-13 19:16:26

More information about FRB at CRAN
Permanent link

Package xts updated to version 0.6-5 with previous version 0.6-4 dated 2009-01-09

Author: Jeffrey A. Ryan, Josh M. Ulrich
Title: Extensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.

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Package ismev updated to version 1.33 with previous version 1.32 dated 2009-01-01

Author: Original S functions by Stuart Coles, R port and R documentation files by Alec Stephenson.
Title: An Introduction to Statistical Modeling of Extreme Values
Description: Functions to support the computations carried out in `An Introduction to Statistical Modeling of Extreme Values' by Stuart Coles. The functions may be divided into the following groups; maxima/minima, order statistics, peaks over thresholds and point processes.

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Package doBy updated to version 3.9 with previous version 3.7 dated 2008-12-21

Author: Søren Højsgaard with contributions from Kevin Wright
Title: Groupwise computations of summary statistics and other utilities
Description: Facilities for groupwise computations of summary statistics and other facilities for working with grouped data.

Diff between doBy versions 3.7 dated 2008-12-21 and 3.9 dated 2009-05-13

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Package cem updated to version 1.0.106 with previous version 1.0.96 dated 2009-04-14

Author: Stefano Iacus Gary King Giuseppe Porro
Title: CEM: Software for Coarsened Exact Matching
Description: This program implements the coarsened exact matching algorithm (and many extensions) described in Stefano M. Iacus, Gary King, and Giuseppe Porro, "Matching for Causal Inference Without Balance Checking," http://gking.harvard.edu/files/abs/cem-abs.shtml

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Package RgoogleMaps updated to version 1.1 with previous version 1.0 dated 2009-05-06

Author: Markus Loecher, Sense Networks
Title: Overlays on Google map tiles in R
Description: This package serves two purposes: (i) Provide a comfortable R interface to query the Google server for static maps, and (ii) Use the map as a background image to overlay plots within R. This requires proper coordinate scaling.

Diff between RgoogleMaps versions 1.0 dated 2009-05-06 and 1.1 dated 2009-05-13

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New package NeatMap with initial version 0.1
Package: NeatMap
Type: Package
Title: Non-clustered heatmap alternatives
Version: 0.1
Date: 2009-05-12
Author: Satwik Rajaram and Yoshi Oono
Depends: ggplot2, rgl
Maintainer: Satwik Rajaram
Description: NeatMap is a package to create heatmap like plots in 2 and 3 dimensions, without the need for cluster analysis. Like the heatmap, the plots created by NeatMap display both a dimensionally reduced representation of the data as well as the data itself. They are intended to be used in conjunction with dimensional reduction techniques such as PCA.
License: GPL-3
LazyLoad: yes
Packaged: 2009-05-13 00:30:51 UTC; satwik
Repository: CRAN
Date/Publication: 2009-05-13 07:05:21

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Package IBrokers updated to version 0.2-1 with previous version 0.2-0 dated 2009-05-11

Author: Jeffrey A. Ryan
Title: R API to Interactive Brokers Trader Workstation
Description: Provides native Raccess to Interactive Brokers Trader Workstation API.

Diff between IBrokers versions 0.2-0 dated 2009-05-11 and 0.2-1 dated 2009-05-13

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Tue, 12 May 2009

Package lme4 updated to version 0.999375-30 with previous version 0.999375-28 dated 2008-12-14

Author: Douglas Bates and Martin Maechler
Title: Linear mixed-effects models using S4 classes
Description: Fit linear and generalized linear mixed-effects models.

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Package apsrtable updated to version 0.7-4 with previous version 0.7-3 dated 2009-05-10

Author: Michael Malecki
Title: apsrtable model-output formatter for social science
Description: Formats latex tables from one or more model objects side-by-side with standard errors below, not unlike tables found in such journals as the American Political Science Review.

Diff between apsrtable versions 0.7-3 dated 2009-05-10 and 0.7-4 dated 2009-05-12

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Package Metabonomic updated to version 3.1.3.3 with previous version 3.1.3.2 dated 2009-05-06

Author: Jose L. Izquierdo Instituto de Estudios Biofuncionales(U.C.M.).
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis (Baseline, Normalization, Peak Detection, PCA, PLS, Nearest Neigbourgt, Neural Network) developed to make easy this data analysis.

Diff between Metabonomic versions 3.1.3.2 dated 2009-05-06 and 3.1.3.3 dated 2009-05-12

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Package quantreg updated to version 4.30 with previous version 4.27 dated 2009-04-14

Author: Roger Koenker
Title: Quantile Regression
Description: Quantile regression and related methods.

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Package gmm updated to version 1.0-6 with previous version 1.0-4 dated 2009-03-11

Author: Pierre Chausse
Title: Generalized Method of Moments and Generalized Empirical Likelihood
Description: It is a complete suite to estimate models based on moment conditions. It includes the two step Generalized method of moments (GMM) of Hansen(1982), the iterated GMM and continuous updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several methods that belong to the Generalized Empirical Likelihood (GEL) family of estimators, as presented by Smith(1997), Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).

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Package VR updated to version 7.2-47 with previous version 7.2-46 dated 2009-03-10

Author: S original by Venables & Ripley. R port by Brian Ripley , following earlier work by Kurt Hornik and Albrecht Gebhardt.
Bundle: VR
Contains: MASS class nnet spatial

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Package SparseM updated to version 0.80 with previous version 0.79 dated 2009-01-26

Author: Roger Koenker and Pin Ng
Title: Sparse Linear Algebra
Description: Basic linear algebra for sparse matrices

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Mon, 11 May 2009

Package scrime updated to version 1.1.4 with previous version 1.1.2 dated 2009-01-27

Author: Holger Schwender, Arno Fritsch
Title: Analysis of High-Dimensional Categorical Data such as SNP Data
Description: Tools for the analysis of high-dimensional data developed/implemented at the group "Statistical Complexity Reduction In Molecular Epidemiology" (SCRIME). Main focus is on SNP data. But most of the functions can also be applied to other types of categorical data.

Diff between scrime versions 1.1.2 dated 2009-01-27 and 1.1.4 dated 2009-05-11

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Package gpclib updated to version 1.4-4 with previous version 1.4-3 dated 2009-02-16

Author: Roger D. Peng with contributions from Duncan Murdoch; GPC library by Alan Murta
Title: General Polygon Clipping Library for R
Description: General polygon clipping routines for R based on Alan Murta's C library

Diff between gpclib versions 1.4-3 dated 2009-02-16 and 1.4-4 dated 2009-05-11

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Package ascii updated to version 0.1.3 with previous version 0.1.2 dated 2009-05-04

Author: David Hajage
Title: Export R objects to asciidoc or txt2tags
Description: Coerce R object to asciidoc or txt2tags syntax. Package comes with two drivers for Sweave.

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Package IBrokers updated to version 0.2-0 with previous version 0.1-3 dated 2008-11-18

Author: Jeffrey A. Ryan
Title: R API to Interactive Brokers Trader Workstation
Description: Provides native Raccess to Interactive Brokers Trader Workstation API.

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Package mixlow updated to version 0.01-2 with previous version 0.01.1 dated 2009-02-23

Author: John Boik
Title: mixlow method for assessing drug synergism
Description: mixlow software for assessing drug synergism/antagonism

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Package minet updated to version 1.6.0 with previous version 1.4.0 dated 2009-05-10

Author: Patrick E. Meyer, Frederic Lafitte, Gianluca Bontempi
Title: Mutual Information Network Inference
Description: This package implements various algorithms for inferring mutual information networks from data. All the algorithms compute the mutual information matrix in order to infer a network. Several mutual information estimators are implemented.

Diff between minet versions 1.4.0 dated 2009-05-10 and 1.6.0 dated 2009-05-11

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Package coin updated to version 1.0-4 with previous version 1.0-3 dated 2009-04-01

Author: Torsten Hothorn, Kurt Hornik, Mark A. van de Wiel and Achim Zeileis
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems.

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Package ccgarch updated to version 0.1.4-1 with previous version 0.1.3 dated 2009-05-04

Author: Tomoaki Nakatani
Title: Conditional Correlation GARCH models
Description: Functions for estimating and simulating the family of the CC-GARCH models.

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Package bayesGARCH updated to version 1-00.04 with previous version 1-00.02 dated 2008-12-04

Author: David Ardia
Title: Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
Description: This package provides the bayesGARCH function which performs the Bayesian estimation of the GARCH(1,1) model with Student's t innovations.

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Package SMIR updated to version 0.02 with previous version 0.01 dated 2009-05-04

Author: Murray Aitkin, Brian Francis, John Hinde, Ross Darnell
Title: Companion to Statistical Modelling in R
Description: This package accompanies Aitkin et al, Statistical Modelling in R, OUP, 2009. The package contains some functions and datasets used in the text.

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Package AdMit updated to version 1-01.02 with previous version 1-01.01 dated 2009-01-25

Author: David Ardia, Lennart F. Hoogerheide and Herman K. van Dijk
Title: Adaptive Mixture of Student-t distributions
Description: This package provides functions to perform the fitting of an adaptive mixture of Student-t distributions to a target density through its kernel function. The mixture approximation can then be used as the importance density in importance sampling or as the candidate density in the Metropolis-Hastings algorithm to obtain quantities of interest for the target density itself.

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Package gplots updated to version 2.7.1 with previous version 2.7.0 dated 2009-04-23

Author: Gregory R. Warnes. Includes R source code and/or documentation contributed by (in alphabetical order): Ben Bolker, Lodewijk Bonebakker, Robert Gentleman, Wolfgang Huber Andy Liaw, Thomas Lumley, Martin Maechler, Arni Magnusson, Steffen Moeller, Marc Schwartz, Bill Venables
Title: Various R programming tools for plotting data
Description: Various R programming tools for plotting data

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Package StreamMetabolism updated to version 0.03-3 with previous version 0.03-2 dated 2009-04-15

Author: Stephen A Sefick Jr.
Title: Stream Metabolism-A package for calculating single station metabolism from diurnal Oxygen curves
Description: This package contains functions for calculating GPP, NDM, and R from single station diurnal Oxygen curves

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Sun, 10 May 2009

Package vbmp updated to version 1.12.0 with previous version 1.3.0 dated 2007-07-24

Author: Nicola Lama , Mark Girolami
Title: Variational Bayesian Multinomial Probit Regression
Description: Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors. It estimates class membership posterior probability employing variational and sparse approximation to the full posterior. This software also incorporates feature weighting by means of Automatic Relevance Determination.

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Package st updated to version 1.1.3 with previous version 1.1.2 dated 2009-04-26

Author: Rainer Opgen-Rhein, Verena Zuber, and Korbinian Strimmer.
Title: Shrinkage t Statistic and Correlation-Adjusted t Score
Description: This package implements the "shrinkage t" statistic introduced in Opgen-Rhein and Strimmer (2007) and a shrinkage estimate of the "correlation-adjusted t-score" (cat score) described in Zuber and Strimmer (2009). It also offers a convenient interface to a number of other regularized t-statistics commonly employed in high-dimensional case-control studies.

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Package rggobi updated to version 2.1.14 with previous version 2.1.13 dated 2009-05-05

Author: Duncan Temple Lang , Debby Swayne , Hadley Wickham , Michael Lawrence
Title: Interface between R and GGobi
Description: The rggobi package provides a command-line interface to GGobi, an interactive and dynamic graphics package. Rggobi complements GGobi's graphical user interface, providing a way to fluidly transition between analysis and exploration, as well as automating common tasks.

Diff between rggobi versions 2.1.13 dated 2009-05-05 and 2.1.14 dated 2009-05-10

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Package qvalue updated to version 1.18.0 with previous version 1.1.1 dated 2009-02-24

Author: Alan Dabney and John D. Storey , with assistance from Gregory R. Warnes
Title: Q-value estimation for false discovery rate control
Description: This package takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant. Various plots are automatically generated, allowing one to make sensible significance cut-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q-values from this software. The software can be applied to problems in genomics, brain imaging, astrophysics, and data mining.

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Package pomp updated to version 0.23-6 with previous version 0.23-5 dated 2009-05-04

Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes

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Package plspm updated to version 0.1-2 with previous version 0.1-1 dated 2009-05-04

Author: Gaston Sanchez
Title: Partial Least Squares data analysis methods
Description: Partial Least Squares (PLS) methods with emphasis on structural equation models with latent variables.

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Package pamr updated to version 1.42.0 with previous version 1.33 dated 2009-04-15

Author: T. Hastie, R. Tibshirani, Balasubramanian Narasimhan, Gil Chu
Title: Pam: prediction analysis for microarrays
Description: Some functions for sample classification in microarrays

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New package optBiomarker with initial version 1.0-20
Package: optBiomarker
Type: Package
Title: Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules
Version: 1.0-20
Date: 2009-05-09
Depends: R(>= 2.6.0), rpanel,rgl
Imports: rgl,MASS, randomForest, e1071,ipred, msm
Author: Mizanur Khondoker
Maintainer: Mizanur Khondoker
Description: Estimates optimal number of biomarkers for two-group classification based on microarray data
License: GPL (>= 2)
Packaged: 2009-05-09 21:03:33 UTC; mizanur
Repository: CRAN
Date/Publication: 2009-05-10 18:54:59

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Package multtest updated to version 2.0.0 with previous version 1.23.3 dated 2009-02-15

Author: Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra Taylor, Sandrine Dudoit
Title: Resampling-based multiple hypothesis testing
Description: Non-parametric bootstrap and permutation resampling-based multiple testing procedures (including empirical Bayes methods) for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Several choices of bootstrap-based null distribution are implemented (centered, centered and scaled, quantile-transformed). Single-step and step-wise methods are available. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models as well as those based on correlation parameters) are included. When probing hypotheses with t-statistics, users may also select a potentially faster null distribution which is multivariate normal with mean zero and variance covariance matrix derived from the vector influence function. Results are reported in terms of adjusted p-values, confidence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments.

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Package minet updated to version 1.4.0 with previous version 1.1.7 dated 2009-01-05

Author: Patrick E. Meyer, Frederic Lafitte, Gianluca Bontempi
Title: Mutual Information Network Inference
Description: This package implements various algorithms for inferring mutual information networks from data. All the algorithms compute the mutual information matrix in order to infer a network. Several mutual information estimators are implemented.

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Package mi updated to version 0.07-2 with previous version 0.07-1 dated 2009-04-29

Author: Andrew Gelman , Jennifer Hill , Masanao Yajima , Yu-Sung Su , Maria Grazia Pittau
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking

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Package maanova updated to version 1.14.0 with previous version 1.13.3 dated 2009-02-13

Author: Hao Wu, modified by Hyuna Yang and Keith Sheppard with ideas from Gary Churchill, Katie Kerr and Xiangqin Cui.
Title: Tools for analyzing Micro Array experiments
Description: Analysis of N-dye Micro Array experiment using mixed model effect. Containing anlysis of variance, permutation and bootstrap, cluster and consensus tree.

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Package impute updated to version 1.16.0 with previous version 1.0-5 dated 2006-04-18

Author: Trevor Hastie, Robert Tibshirani, Balasubramanian Narasimhan, Gilbert Chu
Title: impute: Imputation for microarray data
Description: Imputation for microarray data (currently KNN only)

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Package hopach updated to version 2.4.0 with previous version 2.3.0 dated 2009-02-15

Author: Katherine S. Pollard, with Mark J. van der Laan and Greg Wall
Title: Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
Description: The HOPACH clustering algorithm builds a hierarchical tree of clusters by recursively partitioning a data set, while ordering and possibly collapsing clusters at each level. The algorithm uses the Mean/Median Split Silhouette (MSS) criteria to identify the level of the tree with maximally homogeneous clusters. It also runs the tree down to produce a final ordered list of the elements. The non-parametric bootstrap allows one to estimate the probability that each element belongs to each cluster (fuzzy clustering).

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Package hexbin updated to version 1.18.0 with previous version 1.17.0 dated 2008-12-04

Author: Dan Carr , ported by Nicholas Lewin-Koh and Martin Maechler
Title: Hexagonal Binning Routines
Description: Binning and plotting functions for hexagonal bins. Now uses and relies on grid graphics and formal (S4) classes and methods.

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Package gtools updated to version 2.6.1 with previous version 2.5.0-1 dated 2009-02-19

Author: Gregory R. Warnes. Includes R source code and/or documentation contributed by Ben Bolker and Thomas Lumley
Title: Various R programming tools
Description: Various R programming tools

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Package graph updated to version 1.22.2 with previous version 1.20.0 dated 2008-11-28

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon
Title: graph: A package to handle graph data structures
Description: A package that implements some simple graph handling capabilities.

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Package gpls updated to version 1.16.0 with previous version 1.3.1 dated 2006-04-15

Author: Beiying Ding
Title: Classification using generalized partial least squares
Description: Classification using generalized partial least squares for two-group and multi-group (more than 2 group) classification.

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Package gmodels updated to version 2.15.0 with previous version 2.14.1 dated 2007-12-08

Author: Gregory R. Warnes. Includes R source code and/or documentation contributed by Ben Bolker, Thomas Lumley, and Randall C Johnson. Contributions from Randall C. Johnson are Copyright (2005) SAIC-Frederick, Inc. Funded by the Intramural Research Program, of the NIH, National Cancer Institute, Center for Cancer Research under NCI Contract NO1-CO-12400.
Title: Various R programming tools for model fitting
Description: Various R programming tools for model fitting

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Package gene2pathway updated to version 1.2.0 with previous version 1.0.5.4 dated 2009-04-22

Author: Holger Froehlich , contributions by Tim Beissbarth
Title: Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures
Description: The package takes a list of genes and predicts to which KEGG pathway each gene maps to. This is done by looking at the InterPro domains of each gene. Each prediction is assigned a confidence score. The package also allows to predict connected component membership of genes within signaling pathways. Separate models for each organism supported by KEGG can be trained.

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Package fork updated to version 1.2.2 with previous version 1.2.1 dated 2007-11-27

Author: Gregory R. Warnes . Financial support for some aspects of this package provided by Metrum Research Group, LLC .
Title: R functions for handling multiple processes.
Description: These functions provides simple wrappers around the Unix process management API calls: fork, signal, wait, waitpid, kill, and _exit. This enables construction of programs that utilize and mange multiple concurrent processes. Commercial support for this package available from Random Technologies, LLC

Diff between fork versions 1.2.1 dated 2007-11-27 and 1.2.2 dated 2009-05-10

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Package ensembleBMA updated to version 4.2.1 with previous version 4.2 dated 2009-04-01

Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann Gneiting, University of Washington With contributions from Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts from ensemble forecasts and weather observations.

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Package effects updated to version 2.0-7 with previous version 2.0-6 dated 2009-04-23

Author: John Fox and Jangman Hong. We are grateful to Robert Andersen, David Firth, and Michael Friendly, for various suggestions.
Title: Effect Displays for Linear, Generalized Linear, Multinomial-Logit, and Proportional-Odds Logit Models
Description: Graphical and tabular effect displays, e.g., of interactions, for linear generalized linear, multinomial-logit, and proportional-odds logit models.

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Package diffusionMap updated to version 0.0-2 with previous version 0.0-1 dated 2009-05-08

Author: Joseph Richards , and Ann Lee
Title: Diffusion map
Description: Implements diffusion map method of data parametrization, including creation and visualization of diffusion map and course-graining using diffusion K-means.

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Package apsrtable updated to version 0.7-3 with previous version 0.7-2 dated 2009-02-26

Author: Michael Malecki
Title: apsrtable model-output formatter for social science
Description: Formats latex tables from one or more model objects side-by-side with standard errors below, not unlike tables found in such journals as the American Political Science Review.

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Package RLMM updated to version 1.6.0 with previous version 0.7 dated 2005-09-05

Author: Nusrat Rabbee , Gary Wong
Title: A Genotype Calling Algorithm for Affymetrix SNP Arrays
Description: A classification algorithm, based on a multi-chip, multi-SNP approach for Affymetrix SNP arrays. Using a large training sample where the genotype labels are known, this aglorithm will obtain more accurate classification results on new data. RLMM is based on a robust, linear model and uses the Mahalanobis distance for classification. The chip-to-chip non-biological variation is removed through normalization. This model-based algorithm captures the similarities across genotype groups and probes, as well as thousands other SNPs for accurate classification. NOTE: 100K-Xba only at for now.

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Package RBGL updated to version 1.20.0 with previous version 1.18.0 dated 2008-11-28

Author: Vince Carey , Li Long , R. Gentleman
Title: An interface to the BOOST graph library
Description: A fairly extensive and comprehensive interface to the graph algorithms contained in the BOOST library.

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Package LMGene updated to version 1.14.0 with previous version 1.9.1 dated 2007-12-15

Author: David Rocke, Geun Cheol Lee, and John Tillinghast.
Title: LMGene Software for Date Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays
Description: LMGene package for analysis of microarray data using a linear model and glog data transformation in the R statistical package.

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Package Icens updated to version 1.16.0 with previous version 1.2.0 dated 2005-11-04

Author: R. Gentleman and Alain Vandal .
Title: NPMLE for Censored and Truncated Data
Description: Many functions for computing the NPMLE for censored and truncated data.

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Package CORREP updated to version 1.10.0 with previous version 1.0.1 dated 2007-03-31

Author: Dongxiao Zhu and Youjuan Li
Title: Multivariate Correlation Estimator and Statistical Inference Procedures.
Description: Multivariate correlation estimation and statistical inference. See package vignette.

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Sat, 09 May 2009

Package vcd updated to version 1.2-4 with previous version 1.2-3 dated 2009-03-09

Author: David Meyer, Achim Zeileis, Kurt Hornik
Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference procedures aimed particularly at categorical data. Special emphasis is given to highly extensible grid graphics. The package was inspired by the book "Visualizing Categorical Data" by Michael Friendly.

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Fri, 08 May 2009

Package igraph updated to version 0.5.2-2 with previous version 0.5.2 dated 2009-04-14

Author: Gabor Csardi
Title: Routines for simple graphs, network analysis.
Description: Routines for simple graphs and network analysis. igraph can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality indices and much more.

Diff between igraph versions 0.5.2 dated 2009-04-14 and 0.5.2-2 dated 2009-05-08

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Package vrtest updated to version 0.93 with previous version 0.91 dated 2009-04-14

Author: Jae H. Kim
Title: Variance Ratio tests and spectral shape tests for Weak-form Market Efficiency
Description: A collection of variance ratio and spectral shapte tests

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Package robCompositions updated to version 1.2.2 with previous version 1.2 dated 2009-03-06

Author: Matthias Templ, Karel Hron, Peter Filzmoser
Title: Robust Estimation for Compositional Data.
Description: The package includes methods for imputation of compositional data including robust methods, (robust) outlier detection for compositional data, (robust) principal component analysis for compositional data, (robust) factor analysis for compositional data and (robust) Anderson-Darling normality tests for compositional data.

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Package caret updated to version 4.12 with previous version 4.11 dated 2009-04-29

Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre Williams and Chris Keefer
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and regression models

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New package diffusionMap with initial version 0.0-1
Package: diffusionMap
Version: 0.0-1
Date: 2009-04-01
Title: Diffusion map
Author: Joseph Richards , and Ann Lee
Maintainer: Joseph Richards
Description: Implements diffusion map method of data parametrization, including creation and visualization of diffusion map and course-graining using diffusion K-means.
Depends: R (>= 2.4.0), scatterplot3d
Imports: scatterplot3d
License: GPL-2
URL: http://www.r-project.org, http://www.stat.cmu.edu/~annlee/software.htm
Packaged: Thu May 7 18:02:52 2009; jwrichar
Repository: CRAN
Date/Publication: 2009-05-08 11:04:35

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Package RItools updated to version 0.1-6 with previous version 0.1-5 dated 2009-01-22

Author: Jake Bowers , Mark Fredrickson , and Ben Hansen
Title: Randomization inference tools
Description: Tools for randomization inference.

Diff between RItools versions 0.1-5 dated 2009-01-22 and 0.1-6 dated 2009-05-08

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Package RcmdrPlugin.qcc updated to version 1.0-5 with previous version 1.0-4 dated 2009-05-06

Author: Renan Cortes , contributions of I. Prestes and Suzi Camey
Title: Rcmdr qcc Plug-In
Description: This package provides an Rcmdr "plug-in" based on the qcc package, and it provides an integration between the user and the tools of SPC.

Diff between RcmdrPlugin.qcc versions 1.0-4 dated 2009-05-06 and 1.0-5 dated 2009-05-08

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New package ExPD2D with initial version 1.0.1
Package: ExPD2D
Type: Package
Title: Exact Computation of Bivariate Projection Depth Based on Fortran Code
Version: 1.0.1
Date: 2009-05-06
Author: Yijun Zuo, Xiangyang Ye
Maintainer: Xiangyang Ye
Description: Projection depth is one of favorite data depth among all its competitors. But like all depth functions, compute data depth is a very challenging problem. This package computes exact projection depth based on FORTRAN code, but now one can utilize the package in R to get the exact projection depth of data points.
License: GPL-2
LazyLoad: yes
URL: http://home.utah.edu/~u0585652
Packaged: Thu May 7 14:18:05 2009; u0585652
Repository: CRAN
Date/Publication: 2009-05-08 11:04:11

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Thu, 07 May 2009

Package FrF2 updated to version 0.92-2 with previous version 0.92-1 dated 2009-05-04

Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional Factorial designs. Furthermore, analysis tools for Fractional Factorial designs with 2-level factors are offered (main effects and interaction plots for all factors simultaneously, cube plot for looking at the simultaneous effects of three factors, full or half normal plot, alias structure in a more readable format than with the built-in function alias). The package is currently subject to intensive development. While much of the intended functionality is already available, some changes and improvements are still to be expected. Suggestions are welcome.

Diff between FrF2 versions 0.92-1 dated 2009-05-04 and 0.92-2 dated 2009-05-07

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Package ffmanova updated to version 0.1-1.2 with previous version 0.1-1.1 dated 2009-02-23

Author: Øyvind Langsrud and Bjørn-Helge Mevik
Title: Fifty-fifty MANOVA
Description: This package performs general linear modeling with multiple responses (MANCOVA). An overall p-value for each model term is calculated by the 50-50 MANOVA method, which handles collinear responses. Rotation testing is used to compute adjusted single response p-values according to familywise error rates and false discovery rates.

Diff between ffmanova versions 0.1-1.1 dated 2009-02-23 and 0.1-1.2 dated 2009-05-07

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New package mixAK with initial version 0.3
Package: mixAK
Version: 0.3
Date: 2009-05-07
Title: Mixture of methods including mixtures
Author: Arnost Komarek
Maintainer: Arnost Komarek
Depends: R (>= 2.0.0), coda, colorspace
Description: This package contains a mixture of statistical methods including the MCMC methods to analyze normal mixtures
License: GPL (>= 2)
URL: http://www.karlin.mff.cuni.cz/~komarek
Packaged: 2009-05-07 07:20:30 UTC; komarek
Repository: CRAN
Date/Publication: 2009-05-07 09:21:25

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Package biclust updated to version 0.8.1 with previous version 0.7.2 dated 2009-04-28

Author: Sebastian Kaiser, Rodrigo Santamaria, Roberto Theron, Luis Quintales and Friedrich Leisch.
Title: BiCluster Algorithms
Description: The main function biclust provides several algorithms to find biclusters in two-dimensional data: Cheng and Church, Spectral, Plaid Model, Xmotifs and Bimax. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.

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Package analogue updated to version 0.6-8 with previous version 0.6-6 dated 2009-03-10

Author: Gavin L. Simpson, Jari Oksanen
Title: Analogue and weighted averaging methods for palaeoecology
Description: Fits Modern Analogue Technique and Weighted Averaging transfer function models for prediction of environmental data from species data, and related methods used in palaeoecology.

Diff between analogue versions 0.6-6 dated 2009-03-10 and 0.6-8 dated 2009-05-07

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Wed, 06 May 2009

Package svcR updated to version 1.4.2 with previous version 1.4.1 dated 2008-07-14

Author: Nicolas Turenne .
Title: svcR package
Description: svcR implements a support vector machine technique for clustering It includes choice between three kinds of kernel. Original cluster labeling and export of clusters. Format of data require 3 files: matrix, attributes, variables.

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Package prabclus updated to version 2.1-3 with previous version 2.1-2 dated 2008-09-21

Author: Christian Hennig , Bernhard Hausdorf
Title: Functions for clustering of presence-absence and abundance data
Description: Distance-based parametric bootstrap tests for clustering, mainly intended for presence-absence data and abundance data (clustering of species distribution ranges). Jaccard, Kulczynski, quantitative Kulczynski and geco distance measures, clustering of presence-absence and abundance data, and nearest neighbor based noise detection (R port of Byers and Raftery's (1998) "NNclean"). Main functions are prabtest, abundtest (for testing), prabclust (for clustering), prabinit (for preparing the data) and NNclean (for noise detection). The help-pages for prabtest, abundtest and prabclust contain simple standard executions. Note that the use of the package mclust (called by function prabclust) is protected by a special license, see http://www.stat.washington.edu/mclust/license.txt, particularly point 6.

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Package fpc updated to version 1.2-4 with previous version 1.2-3 dated 2007-06-14

Author: Christian Hennig
Title: Fixed point clusters, clusterwise regression and discriminant plots
Description: Fuzzy and crisp fixed point cluster analysis based on Mahalanobis distance and linear regression fixed point clusters. Semi-explorative, semi-model-based clustering methods, operating on n*p data, do not need prespecification of number of clusters, produce overlapping clusters. Symmetric and asymmetric discriminant projections separate groups optimally, used to visualize the separation of groupings, visual cluster validation. Clusterwise linear regression by normal mixture modeling. Cluster validation statistics for distance based clustering including corrected Rand index. Clusterwise cluster stability assessment. DBSCAN clustering. Interface functions for many clustering methods implemented in R. Note that the use of the package mclust (called by function prabclust) is protected by a special license, see http://www.stat.washington.edu/mclust/license.txt, particularly point 6.

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Package tlemix updated to version 0.0.5 with previous version 0.0.4 dated 2009-03-04

Author: P. Neytchev, P. Filzmoser, R. Patnaik, A. Eisl and R. Boubela
Title: Trimmed Maximum Likelihood Estimation
Description: TLE implements a general framework for robust fitting of finite mixture models. Parameter estimation is performed using the EM algorithm.

Diff between tlemix versions 0.0.4 dated 2009-03-04 and 0.0.5 dated 2009-05-06

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Package gcExplorer updated to version 0.9-1 with previous version 0.9-0 dated 2009-01-13

Author: Theresa Scharl, Ingo Voglhuber, Friedrich Leisch
Title: Graphical Cluster Explorer
Description: Visualize cluster results and investigate additional properties of clusters using interactive neighbourhood graphs. By clicking on the node representing the cluster, information about the cluster is provided using additional graphics or summary statistics. For microarray data, tables with links to genetic databases like gene ontolgy can be created for each cluster.

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Package bipartite updated to version 0.91 with previous version 0.90 dated 2009-03-24

Author: Carsten F. Dormann and Bernd Gruber, with additional code from Jochen Fruend, also based on C-code developed by Nils Bluethgen and by Miguel Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological indices.
Description: Bipartite provides functions to viualise webs and calculate a series of indices commonly used to describe pattern in ecological webs. It focusses on webs consisting of only two trophic levels, e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the webs topology.

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Package Metabonomic updated to version 3.1.3.2 with previous version 3.1.3 dated 2009-04-16

Author: Jose L. Izquierdo Instituto de Estudios Biofuncionales(U.C.M.).
Title: GUI for Metabonomic Analysis
Description: Graphical User Interface for the Metabonomic Analysis (Baseline, Normalization, Peak Detection, PCA, PLS, Nearest Neigbourgt, Neural Network) developed to make easy this data analysis.

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Package EngrExpt updated to version 0.1-6 with previous version 0.1-5 dated 2009-04-15

Author: R port by Douglas Bates and Karen A.F. Copeland
Title: Data sets from "Introductory Statistics for Engineering Experimentation"
Description: Datasets from Nelson, Coffin and Copeland "Introductory Statistics for Engineering Experimentation" (Elsevier, 2003) with sample code.

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New package FSelector with initial version 0.15
Package: FSelector
Type: Package
Title: Selecting attributes
Version: 0.15
Date: 2009-04-11
Author: Piotr Romanski
Maintainer: Piotr Romanski
Description: This package provides functions for selecting attributes from a given dataset. Attribute subset selection is the process of identifying and removing as much of the irrevelant and redundant information as possible.
License: GPL-2 | file LICENCE
Depends: randomForest, RWeka, digest
Suggests: mlbench, rpart
LazyLoad: yes
Repository: CRAN
Repository/R-Forge/Project: fselector
Repository/R-Forge/Revision: 16
Date/Publication: 2009-05-06 17:14:31
Packaged: 2009-05-06 02:55:50 UTC; rforge

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Package statmod updated to version 1.4.0 with previous version 1.3.8 dated 2008-11-19

Author: Gordon Smyth with contributions from Yifang Hu and Peter Dunn
Title: Statistical Modeling
Description: Various statistical modeling functions including growth curve comparisons, limiting dilution analysis, mixed linear models, heteroscedastic regression, Tweedie family generalized linear models, the inverse-Gaussian distribution and Gauss quadrature.

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Package rsm updated to version 1.12 with previous version 1.11 dated 2009-03-08

Author: Russell V. Lenth
Title: Response-surface analysis
Description: Provides functions to generate response-surface designs, fit first- and second-order response-surface models, make contour plots, obtain the path of steepest ascent, and do canonical analysis.

Diff between rsm versions 1.11 dated 2009-03-08 and 1.12 dated 2009-05-06

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Package crawl updated to version 1.0-4 with previous version 1.0-3 dated 2009-02-03

Author: Devin S. Johnson
Title: Fit continuous-time correlated random walk models for animal movement data
Description: The (C)orrelated (RA)ndom (W)alk (L)ibrary of R functions was designed for fitting continuous-time correlated random walk (CTCRW) models with time indexed covariates. The model is fit using the Kalman-Filter on a state space version of the continuous-time staochistic movement process.

Diff between crawl versions 1.0-3 dated 2009-02-03 and 1.0-4 dated 2009-05-06

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Package aod updated to version 1.1-31 with previous version 1.1-30 dated 2009-05-05

Author: Matthieu Lesnoff and Renaud Lancelot
Title: Analysis of Overdispersed Data
Description: This package provides a set of functions to analyse overdispersed counts or proportions. Most of the methods are already available elsewhere but are scattered in different packages. The proposed functions should be considered as complements to more sophisticated methods such as generalized estimating equations (GEE) or generalized linear mixed effect models (GLMM).

Diff between aod versions 1.1-30 dated 2009-05-05 and 1.1-31 dated 2009-05-06

 DESCRIPTION    |    8 ++++----
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New package RgoogleMaps with initial version 1.0
Package: RgoogleMaps
Type: Package
Title: Overlays on Google map tiles in R
Version: 1.0
Date: 2009-04-01
Depends: rgdal
Author: Markus Loecher, Sense Networks
Maintainer: Markus Loecher, Sense Networks
Description: This package serves two purposes: (i) Provide a comfortable R interface to query the Google server for static maps, and (ii) Use the map as a background image to overlay plots within R. This requires proper coordinate scaling.
License: GPL
LazyLoad: yes
Packaged: Tue May 5 15:06:11 2009; markus
Repository: CRAN
Date/Publication: 2009-05-06 12:00:48

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Package RcmdrPlugin.qcc updated to version 1.0-4 with previous version 1.0-3 dated 2009-05-05

Author: Renan Cortes , contributions of I. Prestes and Suzi Camey
Title: Rcmdr qcc Plug-In
Description: This package provides an Rcmdr "plug-in" based on the qcc package, and it provides an integration between the user and the tools of SPC.

Diff between RcmdrPlugin.qcc versions 1.0-3 dated 2009-05-05 and 1.0-4 dated 2009-05-06

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Package FactoClass updated to version 0.7.7 with previous version 0.7.6 dated 2008-11-19

Author: Campo Elias Pardo and Pedro Cesar del Campo , with the contributions from Ivan Diaz ,Mauricio Sadinle .
Title: Combination of Factorial Methods and Cluster Analysis
Description: Multivariate exploration of a data table with factorial analysis and cluster methods.

Diff between FactoClass versions 0.7.6 dated 2008-11-19 and 0.7.7 dated 2009-05-06

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Package EMJumpDiffusion updated to version 1.4 with previous version 1.3.4 dated 2009-04-16

Author: Matthias Graser
Title: EM-Algorithm for Jump Diffusion processes
Description: Calculates parameters for Jump Diffusion processes via EM-Algorithm. The jumps-times are considered to be bernoulli distributed with normally distributed jump-sizes.

Diff between EMJumpDiffusion versions 1.3.4 dated 2009-04-16 and 1.4 dated 2009-05-06

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New package DSpat with initial version 0.1.0
Package: DSpat
Type: Package
Title: Spatial modelling for distance sampling data
Version: 0.1.0
Date: 2008-06-26
Author: Devin Johnson, Jeff Laake, Jay VerHoef
Maintainer: Jeff Laake
Description: Provides functions for fitting spatial models to line transect sampling data and to estimate abundance within a region.
Depends: R (>= 2.0.0), spatstat, RandomFields, gpclib, mgcv
License: GPL (>= 2)
Packaged: 2009-05-05 22:21:59 UTC; johnsond
Repository: CRAN
Date/Publication: 2009-05-06 12:00:31

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Tue, 05 May 2009

Package rggobi updated to version 2.1.13 with previous version 2.1.10 dated 2008-08-14

Author: Duncan Temple Lang , Debby Swayne , Hadley Wickham , Michael Lawrence
Title: Interface between R and GGobi
Description: The rggobi package provides a command-line interface to GGobi, an interactive and dynamic graphics package. Rggobi complements GGobi's graphical user interface, providing a way to fluidly transition between analysis and exploration, as well as automating common tasks.

Diff between rggobi versions 2.1.10 dated 2008-08-14 and 2.1.13 dated 2009-05-05

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New package partDSA with initial version 0.5.1
Package: partDSA
Type: Package
Title: Partitioning using deletion, substitution, and addition moves
Version: 0.5.1
Author: Annette Molinaro , Karen Lostrito , Steve Weston
Maintainer: Annette Molinaro
Description: partDSA is a novel tool for generating a piecewise constant estimation list of increasingly complex predictors based on an intensive and comprehensive search over the entire covariate space.
Depends: R (>= 2.5), nws
License: GPL-2
Packaged: Tue May 5 12:55:33 2009; sw464
Repository: CRAN
Date/Publication: 2009-05-05 18:08:56

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Package luca updated to version 1.0-5 with previous version 1.0-4 dated 2009-04-19

Author: Ji-Hyung Shin , Brad McNeney , Jinko Graham
Title: Likelihood inference from case-control data Under Covariate Assumptions (LUCA)
Description: Likelihood inference in case-control studies of a rare disease under independence or simple dependence of genetic and non-genetic covariates

Diff between luca versions 1.0-4 dated 2009-04-19 and 1.0-5 dated 2009-05-05

 DESCRIPTION    |    6 +++---
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Package leaps updated to version 2.9 with previous version 2.8 dated 2009-02-25

Author: Thomas Lumley using Fortran code by Alan Miller
Title: regression subset selection
Description: Regression subset selection including exhaustive search

Diff between leaps versions 2.8 dated 2009-02-25 and 2.9 dated 2009-05-05

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Package bnlearn updated to version 1.4 with previous version 1.3 dated 2009-03-29

Author: Marco Scutari
Title: Bayesian network structure learning
Description: Bayesian network structure learning via constraint-based (also known as 'conditional independence') and score-based algorithms. This package implements the Grow-Shrink (GS) algorithm, the Incremental Association (IAMB) algorithm, the Interleaved-IAMB (Inter-IAMB) algorithm, the Fast-IAMB (Fast-IAMB) algorithm, the Max-Min Parents and Children (MMPC) algorithm and the Hill-Climbing (HC) greedy search algorithm for both discrete and Gaussian networks, along with many score functions and conditional independence tests. Some utility functions (model comparison and manipulation, random data generation, arc orientation testing, simple and advanced plots) are also included.

Diff between bnlearn versions 1.3 dated 2009-03-29 and 1.4 dated 2009-05-05

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Package aod updated to version 1.1-30 with previous version 1.1-29 dated 2008-10-10

Author: Matthieu Lesnoff and Renaud Lancelot
Title: Analysis of Overdispersed Data
Description: This package provides a set of functions to analyse overdispersed counts or proportions. Most of the methods are already available elsewhere but are scattered in different packages. The proposed functions should be considered as complements to more sophisticated methods such as generalized estimating equations (GEE) or generalized linear mixed effect models (GLMM).

Diff between aod versions 1.1-29 dated 2008-10-10 and 1.1-30 dated 2009-05-05

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New package ClinicalRobustPriors with initial version 1.1-2
Package: ClinicalRobustPriors
Version: 1.1-2
Date: 2009-05-05
Title: Robust Bayesian Priors in Clinical Trials: An R Package for Practitioners
Author: Jairo A. Fuquene P.
Maintainer: Jairo A. Fuquene P.
Description: In a recent paper, Fuquene, Cook, & Pericchi (2008) (http://www.bepress.com/mdandersonbiostat/paper44 ) make a comprehensive proposal putting forward robust, heavy-tailed priors over conjugate, light-tailed priors in Bayesian analysis. The behavior of Robust Bayesian methods is qualitative different than Conjugate and short tailed Bayesian methods and arguably much more reasonable and acceptable to the practitioner and regulatory agencies. This package it is useful to compute the distributions (prior, likelihood and posterior) and moments of the robust models: Cauchy/Binomial, Cauchy/Normal and Berger/Normal. Both, Binomial and Normal Likelihoods can be handled by the software. Furthermore, the assessment of the hyper-parameters and the posterior analysis can be processed.
Depends: R (>= 2.7.2)
License: GPL-2 | GPL-3
Packaged: Tue May 5 13:30:11 2009; Usuario Profesor
Repository: CRAN
Date/Publication: 2009-05-05 18:43:19

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Package plm updated to version 1.1-2 with previous version 1.1-1 dated 2009-03-08

Author: Yves Croissant , Giovanni Millo
Title: Linear models for panel data
Description: A set of estimators and tests for panel data

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Package partitions updated to version 1.9-6 with previous version 1.9-3 dated 2009-02-15

Author: Robin K. S. Hankin
Title: Additive partitions of integers
Description: Additive partitions of integers. Enumerates the partitions, unequal partitions, and restricted partitions of an integer; the three corresponding partition functions are also given. Set partitions are now included.

Diff between partitions versions 1.9-3 dated 2009-02-15 and 1.9-6 dated 2009-05-05

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Package micEcon updated to version 0.5-18 with previous version 0.5-14 dated 2009-03-09

Author: Arne Henningsen
Title: Microeconomic Analysis and Modelling
Description: Tools for microeconomic analysis and microeconomic modelling

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Package ljr updated to version 1.2-2 with previous version 1.2-0 dated 2008-05-08

Author: Michal Czajkowski, Ryan Gill, Greg Rempala
Title: Logistic Joinpoint Regression
Description: Fits and tests logistic joinpoint models.

Diff between ljr versions 1.2-0 dated 2008-05-08 and 1.2-2 dated 2009-05-05

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Package hacks updated to version 0.1-8 with previous version 0.1-5 dated 2009-01-23

Author: Nathan Stephens , Vicky Yang .
Title: Convenient R Functions
Description: This package contains useful functions.

Diff between hacks versions 0.1-5 dated 2009-01-23 and 0.1-8 dated 2009-05-05

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Package gsl updated to version 1.8-14 with previous version 1.8-13 dated 2009-03-30

Author: Robin K. S. Hankin; qrng functions by Duncan Murdoch and multimin by Andrew Clausen
Title: wrapper for the Gnu Scientific Library
Description: An R wrapper for the special functions and quasi random number generators of the Gnu Scientific Library (http://www.gnu.org/software/gsl/). See gsl-package.Rd for details of overall package organization, and Misc.Rd for some functions that are widely used in the package.

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Package frontier updated to version 0.99-2 with previous version 0.9-8 dated 2009-01-14

Author: Tim Coelli, Arne Henningsen
Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier Production and Cost Functions. Two specifications are available: the error components specification with time-varying efficiencies (Battese and Coelli, 1992) and a model specification in which the firm effects are directly influenced by a number of variables (Battese and Coelli, 1995).

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Package foreign updated to version 0.8-35 with previous version 0.8-34 dated 2009-03-12

Author: R-core members, Saikat DebRoy , Roger Bivand and others: see COPYRIGHTS file in the sources.
Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, ...
Description: Functions for reading and writing data stored by statistical packages such as Minitab, S, SAS, SPSS, Stata, Systat, ..., and for reading and writing .dbf (dBase) files.

Diff between foreign versions 0.8-34 dated 2009-03-12 and 0.8-35 dated 2009-05-05

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Package biglm updated to version 0.7 with previous version 0.6 dated 2009-02-24

Author: Thomas Lumley
Title: bounded memory linear and generalized linear models
Description: Regression for data too large to fit in memory

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Package SensoMineR updated to version 1.09 with previous version 1.08 dated 2008-09-16

Author: Francois Husson, Sebastien Le
Title: Sensory data analysis with R
Description: an R package for analysing sensory data

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New package SEMModComp with initial version 1.0
Package: SEMModComp
Type: Package
Title: Model Comparisons for SEM
Version: 1.0
Date: 2009-02-23
Author: Roy Levy
Maintainer: Roy Levy
Description: Conduct tests of difference in fit for mean and covariance structure models as in structural equation modeling (SEM)
URL: http://www.public.asu.edu/~rlevy2/papers&software.html
Depends: mvtnorm
License: GPL (>= 3)
LazyLoad: yes
Packaged: Mon May 4 12:30:18 2009; Roy Levy
Repository: CRAN
Date/Publication: 2009-05-05 07:28:48

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Package RcmdrPlugin.qcc updated to version 1.0-3 with previous version 1.0-2 dated 2009-05-04

Author: Renan Cortes , contributions of I. Prestes and Suzi Camey
Title: Rcmdr qcc Plug-In
Description: This package provides an Rcmdr "plug-in" based on the qcc package, and it provides an integration between the user and the tools of SPC.

Diff between RcmdrPlugin.qcc versions 1.0-2 dated 2009-05-04 and 1.0-3 dated 2009-05-05

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Package KernSmooth updated to version 2.23-1 with previous version 2.22-22 dated 2008-01-27

Author: S original by Matt Wand. R port by Brian Ripley .
Title: Functions for kernel smoothing for Wand & Jones (1995)
Description: functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) "Kernel Smoothing".

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Package BACCO updated to version 1.1-4 with previous version 1.0-58 dated 2009-01-22

Author: Robin K. S. Hankin
Title: Bayesian Analysis of Computer Code Output

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Mon, 04 May 2009

Package tm updated to version 0.3-4.1 with previous version 0.3-4 dated 2009-04-29

Author: Ingo Feinerer, with contributions from Christian Buchta, Kurt Hornik, David Meyer, and Fridolin Wild
Title: Text Mining Package
Description: A framework for text mining applications within R.

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Package R2jags updated to version 0.01-23 with previous version 0.01-22 dated 2009-04-15

Author: Yu-Sung Su , Masanao Yajima ,
Title: A Package for Running jags from R
Description: Using this package to call jags from R.

Diff between R2jags versions 0.01-22 dated 2009-04-15 and 0.01-23 dated 2009-05-04

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Package adehabitat updated to version 1.8.3 with previous version 1.8.2 dated 2009-02-15

Author: Clement Calenge, contributions from Mathieu Basille, Stephane Dray and Scott Fortmann-Roe
Title: Analysis of habitat selection by animals
Description: A collection of tools for the analysis of habitat selection by animals

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Package vars updated to version 1.4-5 with previous version 1.4-4 dated 2009-01-25

Author: Bernhard Pfaff
Title: VAR Modelling
Description: Estimation, lag selection, diagnostic testing, forecasting, causality analysis, forecast error variance decomposition and impulse response functions of VAR models and estimation of SVAR/SVEC models.

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Package tmvtnorm updated to version 0.5-1 with previous version 0.4-2 dated 2009-03-29

Author: Stefan Wilhelm
Title: Truncated Multivariate Normal Distribution
Description: Computes truncated multivariate normal probabilities, quantiles and densities, including one-dimensional marginal densities

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Package plspm updated to version 0.1-1 with previous version 0.1-0 dated 2009-04-15

Author: Gaston Sanchez
Title: Partial Least Squares data analysis methods
Description: Partial Least Squares (PLS) methods with emphasis on structural equation models with latent variables.

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Package pomp updated to version 0.23-5 with previous version 0.23-2 dated 2009-04-19

Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes

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Package plotrix updated to version 2.5-5 with previous version 2.5-4 dated 2009-03-19

Author: Jim Lemon,Ben Bolker,Sander Oom, Eduardo Klein,Barry Rowlingson, Hadley Wickham,Anupam Tyagi, Olivier Eterradossi,Gabor Grothendieck, Michael Toews,John Kane,Mike Cheetham, Rolf Turner,Carl Witthoft,Julian Stander, Thomas Petzoldt,Remko Duursma,Elisa Biancotto, Ofir Levy
Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling functions.

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Package nlme updated to version 3.1-91 with previous version 3.1-90 dated 2008-12-30

Author: Jose Pinheiro , Douglas Bates , Saikat DebRoy , Deepayan Sarkar , the R Core team.
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.

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Package mgcv updated to version 1.5-4 with previous version 1.5-3 dated 2009-04-22

Author: Simon Wood
Title: GAMs with GCV/AIC/REML smoothness estimation and GAMMs by PQL
Description: Routines for GAMs and other generalized ridge regression with multiple smoothing parameter selection by GCV, REML or UBRE/AIC. Also GAMMs by REML or PQL. Includes a gam() function.

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Package mefa updated to version 3.0-1 with previous version 3.0-0 dated 2009-02-17

Author: Peter Solymos
Title: Multivariate Data Handling in Ecology and Biogeography
Description: A framework package aimed to provide standardized computational environment for specialist work via object classes to represent the data coded by samples, taxa and segments (i.e. subpopulations, repeated measures). It supports easy processing of the data along with cross tabulation and relational data tables for samples and taxa. An object of class `mefa' is a project specific compendium of the data and can be easily used in further analyses. Methods are provided for extraction, aggregation, conversion, plotting, summary and reporting of `mefa' objects. Reports can be generated in plain text or LaTeX format. Vignette contains worked examples.

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Package lmomRFA updated to version 2.0 with previous version 1.0 dated 2009-03-03

Author: J. R. M. Hosking
Title: Regional frequency analysis using L-moments
Description: Functions for regional frequency analysis using the methods of J. R. M. Hosking and J. R. Wallis (1997), "Regional frequency analysis: an approach based on L-moments".

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Package lmom updated to version 1.3 with previous version 1.2 dated 2009-03-16

Author: J. R. M. Hosking
Title: L-moments
Description: Functions related to L-moments: computation of L-moments of distributions and data samples; parameter estimation; L-moment ratio diagram; plot vs. quantiles of an extreme-value distribution.

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Package gogarch updated to version 0.6-9 with previous version 0.6-8 dated 2009-03-09

Author: Bernhard Pfaff
Title: Generalized Orthogonal GARCH (GO-GARCH) models
Description: Implementation of the GO-GARCH model class

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Package ccgarch updated to version 0.1.3 with previous version 0.1.2-2 dated 2009-04-16

Author: Tomoaki Nakatani
Title: Conditional Correlation GARCH models
Description: Functions for estimating and simulating the family of the CC-GARCH models.

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Package catmap updated to version 1.6 with previous version 1.5 dated 2008-06-08

Author: Kristin K. Nicodemus
Title: Case-control And Tdt Meta-Analysis Package
Description: catmap is an R package that conducts fixed-effects (inverse variance) and random-effects (DerSimonian and Laird, 1986) meta-analyses of case-control or family-based (TDT) genetic data; in addition, it performs meta-analyses combining these two types of study designs. The fixed-effects model was first described by Kazeem and Farrell (2005); the random-effects model is described in Nicodemus (submitted).

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New package elec with initial version 0.1
Package: elec
Type: Package
Title: Collection of functions for statistical election audits
Version: 0.1
Date: 2009-01-14
Author: Luke Miratrix
Maintainer: Luke Mirarix
Description: This is a bizzare collection of functions written to do various sorts of statistical election audits. There are also functions to generate simulated voting data, and simulated "truth" so as to do simulations to check charactaristics of these methods.
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2009-04-30 23:20:58 UTC; luke
Repository: CRAN
Date/Publication: 2009-05-04 10:18:12

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Package bigmemory updated to version 3.6 with previous version 3.5 dated 2009-04-15

Author: Michael J. Kane and John W. Emerson
Title: Manage massive matrices in R using C++, with support for shared memory and memory-mapped files.
Description: Use C++ to create, store, access, and manipulate massive matrices. Matrices may optionally be allocated to shared memory and/or may use memory-mapped files.

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 bigmemory-3.6/bigmemory/include/boost/config/compiler/sgi_mipspro.hpp                              |    2 
 bigmemory-3.6/bigmemory/include/boost/config/compiler/sunpro_cc.hpp                                |    5 
 bigmemory-3.6/bigmemory/include/boost/config/compiler/vacpp.hpp                                    |    1 
 bigmemory-3.6/bigmemory/include/boost/config/compiler/visualc.hpp                                  |   18 
 bigmemory-3.6/bigmemory/include/boost/config/no_tr1/cmath.hpp                                      |only
 bigmemory-3.6/bigmemory/include/boost/config/platform/bsd.hpp                                      |   19 
 bigmemory-3.6/bigmemory/include/boost/config/select_compiler_config.hpp                            |    4 
 bigmemory-3.6/bigmemory/include/boost/config/stdlib/dinkumware.hpp                                 |    5 
 bigmemory-3.6/bigmemory/include/boost/config/stdlib/libcomo.hpp                                    |    4 
 bigmemory-3.6/bigmemory/include/boost/config/stdlib/libstdcpp3.hpp                                 |    5 
 bigmemory-3.6/bigmemory/include/boost/config/stdlib/modena.hpp                                     |    4 
 bigmemory-3.6/bigmemory/include/boost/config/stdlib/msl.hpp                                        |    4 
 bigmemory-3.6/bigmemory/include/boost/config/stdlib/roguewave.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/config/stdlib/sgi.hpp                                        |    1 
 bigmemory-3.6/bigmemory/include/boost/config/stdlib/stlport.hpp                                    |    3 
 bigmemory-3.6/bigmemory/include/boost/config/stdlib/vacpp.hpp                                      |    1 
 bigmemory-3.6/bigmemory/include/boost/config/suffix.hpp                                            |   74 
 bigmemory-3.6/bigmemory/include/boost/cstdint.hpp                                                  |    2 
 bigmemory-3.6/bigmemory/include/boost/current_function.hpp                                         |only
 bigmemory-3.6/bigmemory/include/boost/date_time/c_local_time_adjustor.hpp                          |   10 
 bigmemory-3.6/bigmemory/include/boost/date_time/c_time.hpp                                         |   22 
 bigmemory-3.6/bigmemory/include/boost/date_time/compiler_config.hpp                                |   32 
 bigmemory-3.6/bigmemory/include/boost/date_time/constrained_value.hpp                              |   49 
 bigmemory-3.6/bigmemory/include/boost/date_time/date_duration.hpp                                  |   27 
 bigmemory-3.6/bigmemory/include/boost/date_time/date_facet.hpp                                     |   32 
 bigmemory-3.6/bigmemory/include/boost/date_time/date_generator_formatter.hpp                       |   42 
 bigmemory-3.6/bigmemory/include/boost/date_time/date_generator_parser.hpp                          |  103 -
 bigmemory-3.6/bigmemory/include/boost/date_time/date_generators.hpp                                |   32 
 bigmemory-3.6/bigmemory/include/boost/date_time/date_parsing.hpp                                   |   77 
 bigmemory-3.6/bigmemory/include/boost/date_time/filetime_functions.hpp                             |  174 +
 bigmemory-3.6/bigmemory/include/boost/date_time/format_date_parser.hpp                             |   22 
 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/conversion.hpp                           |   27 
 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_date.hpp                            |   13 
 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_duration.hpp                        |  116 +
 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_duration_types.hpp                  |   23 
 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_facet.hpp                           |   35 
 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_serialize.hpp                       |    6 
 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/greg_weekday.hpp                         |    4 
 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian/gregorian_io.hpp                         |   15 
 bigmemory-3.6/bigmemory/include/boost/date_time/gregorian_calendar.ipp                             |    4 
 bigmemory-3.6/bigmemory/include/boost/date_time/int_adapter.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/date_time/local_time/local_date_time.hpp                     |   54 
 bigmemory-3.6/bigmemory/include/boost/date_time/local_time/local_time_io.hpp                       |  100 
 bigmemory-3.6/bigmemory/include/boost/date_time/local_time/posix_time_zone.hpp                     |   69 
 bigmemory-3.6/bigmemory/include/boost/date_time/local_time_adjustor.hpp                            |   29 
 bigmemory-3.6/bigmemory/include/boost/date_time/local_timezone_defs.hpp                            |    4 
 bigmemory-3.6/bigmemory/include/boost/date_time/microsec_time_clock.hpp                            |  154 -
 bigmemory-3.6/bigmemory/include/boost/date_time/period_parser.hpp                                  |   32 
 bigmemory-3.6/bigmemory/include/boost/date_time/posix_time/conversion.hpp                          |   14 
 bigmemory-3.6/bigmemory/include/boost/date_time/posix_time/posix_time_config.hpp                   |    4 
 bigmemory-3.6/bigmemory/include/boost/date_time/posix_time/posix_time_io.hpp                       |   69 
 bigmemory-3.6/bigmemory/include/boost/date_time/string_parse_tree.hpp                              |   92 
 bigmemory-3.6/bigmemory/include/boost/date_time/strings_from_facet.hpp                             |   12 
 bigmemory-3.6/bigmemory/include/boost/date_time/time.hpp                                           |   13 
 bigmemory-3.6/bigmemory/include/boost/date_time/time_defs.hpp                                      |   14 
 bigmemory-3.6/bigmemory/include/boost/date_time/time_facet.hpp                                     |  250 +-
 bigmemory-3.6/bigmemory/include/boost/date_time/time_formatting_streams.hpp                        |   13 
 bigmemory-3.6/bigmemory/include/boost/date_time/time_system_split.hpp                              |   20 
 bigmemory-3.6/bigmemory/include/boost/date_time/tz_db_base.hpp                                     |   36 
 bigmemory-3.6/bigmemory/include/boost/date_time/wrapping_int.hpp                                   |   36 
 bigmemory-3.6/bigmemory/include/boost/detail/atomic_count.hpp                                      |    7 
 bigmemory-3.6/bigmemory/include/boost/detail/atomic_count_sync.hpp                                 |    4 
 bigmemory-3.6/bigmemory/include/boost/detail/call_traits.hpp                                       |    2 
 bigmemory-3.6/bigmemory/include/boost/detail/container_fwd.hpp                                     |only
 bigmemory-3.6/bigmemory/include/boost/detail/dynamic_bitset.hpp                                    |   91 
 bigmemory-3.6/bigmemory/include/boost/detail/endian.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/detail/sp_convertible.hpp                                    |    2 
 bigmemory-3.6/bigmemory/include/boost/detail/sp_counted_base.hpp                                   |    4 
 bigmemory-3.6/bigmemory/include/boost/detail/spinlock.hpp                                          |    4 
 bigmemory-3.6/bigmemory/include/boost/detail/utf8_codecvt_facet.hpp                                |    2 
 bigmemory-3.6/bigmemory/include/boost/detail/workaround.hpp                                        |   66 
 bigmemory-3.6/bigmemory/include/boost/exception/detail/error_info_impl.hpp                         |only
 bigmemory-3.6/bigmemory/include/boost/exception/detail/object_hex_dump.hpp                         |    4 
 bigmemory-3.6/bigmemory/include/boost/exception/detail/type_info.hpp                               |only
 bigmemory-3.6/bigmemory/include/boost/exception/diagnostic_information.hpp                         |   47 
 bigmemory-3.6/bigmemory/include/boost/exception/enable_current_exception.hpp                       |  150 -
 bigmemory-3.6/bigmemory/include/boost/exception/enable_error_info.hpp                              |  100 
 bigmemory-3.6/bigmemory/include/boost/exception/error_info.hpp                                     |   12 
 bigmemory-3.6/bigmemory/include/boost/exception/exception.hpp                                      |  398 +++
 bigmemory-3.6/bigmemory/include/boost/exception/get_error_info.hpp                                 |only
 bigmemory-3.6/bigmemory/include/boost/exception/info.hpp                                           |  203 -
 bigmemory-3.6/bigmemory/include/boost/interprocess/allocators/allocator.hpp                        |    2 
 bigmemory-3.6/bigmemory/include/boost/interprocess/allocators/detail/adaptive_node_pool.hpp        |   23 
 bigmemory-3.6/bigmemory/include/boost/interprocess/allocators/detail/node_pool.hpp                 |   15 
 bigmemory-3.6/bigmemory/include/boost/interprocess/anonymous_shared_memory.hpp                     |   12 
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/deque.hpp                            | 1025 ++++------
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/detail/flat_tree.hpp                 |  218 +-
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/detail/node_alloc_holder.hpp         |  151 -
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/detail/tree.hpp                      |  336 ++-
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/flat_map.hpp                         |  413 ++--
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/flat_set.hpp                         |  283 ++
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/list.hpp                             |  384 ++-
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/map.hpp                              |  262 +-
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/set.hpp                              |  267 ++
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/slist.hpp                            |  384 ++-
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/string.hpp                           |   81 
 bigmemory-3.6/bigmemory/include/boost/interprocess/containers/vector.hpp                           |  830 ++++----
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/advanced_insert_int.hpp                  |only
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/algorithms.hpp                           |   11 
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/atomic.hpp                               |    8 
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/config_begin.hpp                         |    4 
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/intersegment_ptr.hpp                     |   69 
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/managed_memory_impl.hpp                  |   10 
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/managed_multi_shared_memory.hpp          |    4 
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/managed_open_or_create_impl.hpp          |    8 
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/move.hpp                                 |   12 
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/named_proxy.hpp                          |  193 +
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/os_file_functions.hpp                    |   13 
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 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/segment_manager_helper.hpp               |   30 
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/type_traits.hpp                          |   41 
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/utilities.hpp                            |  161 +
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/variadic_templates_tools.hpp             |only
 bigmemory-3.6/bigmemory/include/boost/interprocess/detail/win32_api.hpp                            |   20 
 bigmemory-3.6/bigmemory/include/boost/interprocess/errors.hpp                                      |    2 
 bigmemory-3.6/bigmemory/include/boost/interprocess/file_mapping.hpp                                |   64 
 bigmemory-3.6/bigmemory/include/boost/interprocess/interprocess_fwd.hpp                            |    5 
 bigmemory-3.6/bigmemory/include/boost/interprocess/ipc/message_queue.hpp                           |   50 
 bigmemory-3.6/bigmemory/include/boost/interprocess/managed_external_buffer.hpp                     |   39 
 bigmemory-3.6/bigmemory/include/boost/interprocess/managed_heap_memory.hpp                         |   34 
 bigmemory-3.6/bigmemory/include/boost/interprocess/managed_mapped_file.hpp                         |   32 
 bigmemory-3.6/bigmemory/include/boost/interprocess/managed_shared_memory.hpp                       |   34 
 bigmemory-3.6/bigmemory/include/boost/interprocess/managed_windows_shared_memory.hpp               |   25 
 bigmemory-3.6/bigmemory/include/boost/interprocess/mapped_region.hpp                               |   44 
 bigmemory-3.6/bigmemory/include/boost/interprocess/mem_algo/detail/mem_algo_common.hpp             |   37 
 bigmemory-3.6/bigmemory/include/boost/interprocess/mem_algo/detail/multi_simple_seq_fit_impl.hpp   |   72 
 bigmemory-3.6/bigmemory/include/boost/interprocess/mem_algo/detail/simple_seq_fit_impl.hpp         |   75 
 bigmemory-3.6/bigmemory/include/boost/interprocess/mem_algo/rbtree_best_fit.hpp                    |   85 
 bigmemory-3.6/bigmemory/include/boost/interprocess/offset_ptr.hpp                                  |   16 
 bigmemory-3.6/bigmemory/include/boost/interprocess/segment_manager.hpp                             |   88 
 bigmemory-3.6/bigmemory/include/boost/interprocess/shared_memory_object.hpp                        |   18 
 bigmemory-3.6/bigmemory/include/boost/interprocess/smart_ptr/detail/sp_counted_impl.hpp            |    3 
 bigmemory-3.6/bigmemory/include/boost/interprocess/smart_ptr/shared_ptr.hpp                        |    4 
 bigmemory-3.6/bigmemory/include/boost/interprocess/smart_ptr/unique_ptr.hpp                        |   12 
 bigmemory-3.6/bigmemory/include/boost/interprocess/smart_ptr/weak_ptr.hpp                          |    2 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/emulation/interprocess_condition.hpp       |   16 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/emulation/interprocess_mutex.hpp           |   10 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/emulation/interprocess_recursive_mutex.hpp |   22 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/emulation/interprocess_semaphore.hpp       |    4 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/file_lock.hpp                              |   77 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/interprocess_condition.hpp                 |   12 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/interprocess_mutex.hpp                     |    2 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/interprocess_recursive_mutex.hpp           |    9 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/interprocess_semaphore.hpp                 |    4 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/interprocess_upgradable_mutex.hpp          |   12 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/lock_options.hpp                           |   22 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/named_condition.hpp                        |   16 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/named_mutex.hpp                            |   16 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/named_recursive_mutex.hpp                  |    8 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/named_semaphore.hpp                        |   16 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/named_upgradable_mutex.hpp                 |   26 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/posix/interprocess_mutex.hpp               |    4 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/posix/interprocess_recursive_mutex.hpp     |    4 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/posix/interprocess_semaphore.hpp           |    8 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/posix/semaphore_wrapper.hpp                |    2 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/scoped_lock.hpp                            |   29 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/sharable_lock.hpp                          |   18 
 bigmemory-3.6/bigmemory/include/boost/interprocess/sync/upgradable_lock.hpp                        |   24 
 bigmemory-3.6/bigmemory/include/boost/interprocess/windows_shared_memory.hpp                       |   11 
 bigmemory-3.6/bigmemory/include/boost/mpl/O1_size.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/O1_size_fwd.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/accumulate.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/advance.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/advance_fwd.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/alias.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/always.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/and.hpp                                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/apply.hpp                                                |   12 
 bigmemory-3.6/bigmemory/include/boost/mpl/apply_fwd.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/apply_wrap.hpp                                           |   46 
 bigmemory-3.6/bigmemory/include/boost/mpl/arg.hpp                                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/arg_fwd.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/arithmetic.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/as_sequence.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/assert.hpp                                               |   12 
 bigmemory-3.6/bigmemory/include/boost/mpl/at.hpp                                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/at_fwd.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/O1_size_impl.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/adl_barrier.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/advance_backward.hpp                                |   12 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/advance_forward.hpp                                 |   12 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/apply_1st.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/arg_typedef.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/arithmetic_op.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/arity.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/arity_spec.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/at_impl.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/back_impl.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/basic_bind.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/begin_end_impl.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/clear_impl.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/common_name_wknd.hpp                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/comparison_op.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/adl.hpp                                      |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/arrays.hpp                                   |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/bcc.hpp                                      |only
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/bind.hpp                                     |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/compiler.hpp                                 |   14 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/ctps.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/dependent_nttp.hpp                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/dmc_ambiguous_ctps.hpp                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/dtp.hpp                                      |   10 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/eti.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/forwarding.hpp                               |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/gcc.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/has_apply.hpp                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/has_xxx.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/integral.hpp                                 |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/intel.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/lambda.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/msvc.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/msvc_typename.hpp                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/nttp.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/operators.hpp                                |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/overload_resolution.hpp                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/pp_counter.hpp                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/preprocessor.hpp                             |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/static_constant.hpp                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/ttp.hpp                                      |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/typeof.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/use_preprocessed.hpp                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/config/workaround.hpp                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/contains_impl.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/count_args.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/count_impl.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/empty_impl.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/erase_impl.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/erase_key_impl.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/filter_iter.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/fold_impl.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/fold_impl_body.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/fold_op.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/fold_pred.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/front_impl.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/full_lambda.hpp                                     |   12 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_apply.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_begin.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_key_impl.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_rebind.hpp                                      |   10 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_size.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_tag.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/has_type.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/include_preprocessed.hpp                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/insert_impl.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/insert_range_impl.hpp                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/inserter_algorithm.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/integral_wrapper.hpp                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/is_msvc_eti_arg.hpp                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/iter_apply.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/iter_fold_if_impl.hpp                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/iter_fold_impl.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/iter_push_front.hpp                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/joint_iter.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/lambda_arity_param.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/lambda_no_ctps.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/lambda_spec.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/lambda_support.hpp                                  |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/largest_int.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/logical_op.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/msvc_dtw.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/msvc_eti_base.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/msvc_is_class.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/msvc_never_true.hpp                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/msvc_type.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/na.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/na_assert.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/na_fwd.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/na_spec.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/nested_type_wknd.hpp                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/nttp_decl.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/numeric_cast_utils.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/numeric_op.hpp                                      |   12 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/order_impl.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/overload_names.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/partition_op.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/pop_back_impl.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/pop_front_impl.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/advance_backward.hpp               |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/advance_forward.hpp                |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/and.hpp                            |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/apply.hpp                          |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/apply_fwd.hpp                      |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/apply_wrap.hpp                     |   21 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/arg.hpp                            |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/basic_bind.hpp                     |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/bind.hpp                           |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/bind_fwd.hpp                       |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/bitand.hpp                         |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/bitor.hpp                          |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/bitxor.hpp                         |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/deque.hpp                          |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/divides.hpp                        |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/equal_to.hpp                       |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/fold_impl.hpp                      |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/full_lambda.hpp                    |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/greater.hpp                        |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/greater_equal.hpp                  |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/inherit.hpp                        |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/iter_fold_if_impl.hpp              |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/iter_fold_impl.hpp                 |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/lambda_no_ctps.hpp                 |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/less.hpp                           |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/less_equal.hpp                     |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/list.hpp                           |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/list_c.hpp                         |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/map.hpp                            |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/minus.hpp                          |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/modulus.hpp                        |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/not_equal_to.hpp                   |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/or.hpp                             |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/placeholders.hpp                   |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/plus.hpp                           |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/quote.hpp                          |  112 +
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/reverse_fold_impl.hpp              |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/reverse_iter_fold_impl.hpp         |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/set.hpp                            |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/set_c.hpp                          |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/shift_left.hpp                     |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/shift_right.hpp                    |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/template_arity.hpp                 |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/times.hpp                          |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/unpack_args.hpp                    |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/vector.hpp                         |    2 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc/vector_c.hpp                       |    4 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessed/bcc_pre590                             |only
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/add.hpp                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/def_params_tail.hpp                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/default_params.hpp                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/enum.hpp                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/ext_params.hpp                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/filter_params.hpp                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/is_seq.hpp                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/params.hpp                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/partial_spec_params.hpp                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/range.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/repeat.hpp                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/sub.hpp                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/token_equal.hpp                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/preprocessor/tuple.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/ptr_to_ref.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/push_back_impl.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/push_front_impl.hpp                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/range_c/O1_size.hpp                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/range_c/back.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/range_c/empty.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/range_c/front.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/range_c/iterator.hpp                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/range_c/size.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/range_c/tag.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/reverse_fold_impl.hpp                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/reverse_fold_impl_body.hpp                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/reverse_iter_fold_impl.hpp                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/sequence_wrapper.hpp                                |   20 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/shift_op.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/single_element_iter.hpp                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/size_impl.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/sort_impl.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/static_cast.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/template_arity.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/template_arity_fwd.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/test.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/test/assert.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/test/data.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/test/test_case.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/traits_lambda_spec.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/transform_iter.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/type_wrapper.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/unwrap.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/value_wknd.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/aux_/yes_no.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/back.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/back_fwd.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/back_inserter.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/base.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/begin.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/begin_end.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/begin_end_fwd.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/bind.hpp                                                 |   12 
 bigmemory-3.6/bigmemory/include/boost/mpl/bind_fwd.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/bitand.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/bitor.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/bitwise.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/bitxor.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/bool.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/bool_fwd.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/clear.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/clear_fwd.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/comparison.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/contains.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/contains_fwd.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/copy.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/copy_if.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/count.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/count_fwd.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/count_if.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/deque.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/deref.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/distance.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/distance_fwd.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/divides.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/empty.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/empty_base.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/empty_fwd.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/empty_sequence.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/end.hpp                                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/equal.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/equal_to.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/erase.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/erase_fwd.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/erase_key.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/erase_key_fwd.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/eval_if.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/filter_view.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/find.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/find_if.hpp                                              |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/fold.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/for_each.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/front.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/front_fwd.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/front_inserter.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/greater.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/greater_equal.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/has_key.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/has_key_fwd.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/has_xxx.hpp                                              |   18 
 bigmemory-3.6/bigmemory/include/boost/mpl/identity.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/if.hpp                                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/index_if.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/index_of.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/inherit.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/inherit_linearly.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/insert.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/insert_fwd.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/insert_range.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/insert_range_fwd.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/inserter.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/int.hpp                                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/int_fwd.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/integral_c.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/integral_c_fwd.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/integral_c_tag.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/is_placeholder.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/is_sequence.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/iter_fold.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/iter_fold_if.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/iterator_category.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/iterator_range.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/iterator_tags.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/joint_view.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/key_type.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/key_type_fwd.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/lambda.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/lambda_fwd.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/less.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/less_equal.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/limits/arity.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/limits/list.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/limits/map.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/limits/set.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/limits/unrolling.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/limits/vector.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/O1_size.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/begin_end.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/clear.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/empty.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/front.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/include_preprocessed.hpp                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/item.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/iterator.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/numbered.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/numbered_c.hpp                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/pop_front.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/push_back.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/push_front.hpp                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/size.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/aux_/tag.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list0.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list0_c.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list10.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list10_c.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list20.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list20_c.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list30.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list30_c.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list40.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list40_c.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list50.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list/list50_c.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/list_c.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/logical.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/long.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/long_fwd.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/lower_bound.hpp                                          |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/map.hpp                                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/at_impl.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/begin_end_impl.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/clear_impl.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/contains_impl.hpp                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/empty_impl.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/erase_impl.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/erase_key_impl.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/has_key_impl.hpp                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/include_preprocessed.hpp                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/insert_impl.hpp                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/item.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/iterator.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/key_type_impl.hpp                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/map0.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/numbered.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/size_impl.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/tag.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/aux_/value_type_impl.hpp                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/map0.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/map10.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/map20.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/map30.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/map40.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/map/map50.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/math/fixed_c.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/math/is_even.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/math/rational_c.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/max.hpp                                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/max_element.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/min.hpp                                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/min_element.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/min_max.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/minus.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/modulus.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/multiplies.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/multiset/aux_/count_impl.hpp                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/multiset/aux_/insert_impl.hpp                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/multiset/aux_/item.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/multiset/aux_/multiset0.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/multiset/aux_/tag.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/multiset/multiset0.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/negate.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/next.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/next_prior.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/not.hpp                                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/not_equal_to.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/numeric_cast.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/or.hpp                                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/order.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/order_fwd.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/pair.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/pair_view.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/partition.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/placeholders.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/plus.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/pop_back.hpp                                             |    6 
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 bigmemory-3.6/bigmemory/include/boost/mpl/pop_front_fwd.hpp                                        |    6 
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 bigmemory-3.6/bigmemory/include/boost/mpl/push_back.hpp                                            |    6 
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 bigmemory-3.6/bigmemory/include/boost/mpl/remove_if.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/replace.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/replace_if.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/reverse.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/reverse_fold.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/reverse_iter_fold.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/same_as.hpp                                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/sequence_tag.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/sequence_tag_fwd.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set.hpp                                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/at_impl.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/begin_end_impl.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/clear_impl.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/empty_impl.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/erase_impl.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/erase_key_impl.hpp                              |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/has_key_impl.hpp                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/include_preprocessed.hpp                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/insert_impl.hpp                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/item.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/iterator.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/key_type_impl.hpp                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/numbered.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/numbered_c.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/set0.hpp                                        |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/size_impl.hpp                                   |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/tag.hpp                                         |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/aux_/value_type_impl.hpp                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set0.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set0_c.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set10.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set10_c.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set20.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set20_c.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set30.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set30_c.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set40.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set40_c.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set50.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set/set50_c.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/set_c.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/shift_left.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/shift_right.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/single_view.hpp                                          |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/size.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/size_fwd.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/size_t.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/size_t_fwd.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/sizeof.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/sort.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/stable_partition.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/switch.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/tag.hpp                                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/times.hpp                                                |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/transform.hpp                                            |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/transform_view.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/unique.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/unpack_args.hpp                                          |   12 
 bigmemory-3.6/bigmemory/include/boost/mpl/upper_bound.hpp                                          |    8 
 bigmemory-3.6/bigmemory/include/boost/mpl/value_type.hpp                                           |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/value_type_fwd.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector.hpp                                               |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/O1_size.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/at.hpp                                       |    6 
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 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/begin_end.hpp                                |    6 
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 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/include_preprocessed.hpp                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/item.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/iterator.hpp                                 |    6 
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 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/size.hpp                                     |    6 
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 bigmemory-3.6/bigmemory/include/boost/mpl/vector/aux_/vector0.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector0.hpp                                       |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector0_c.hpp                                     |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector10.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector10_c.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector20.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector20_c.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector30.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector30_c.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector40.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector40_c.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector50.hpp                                      |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector/vector50_c.hpp                                    |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/vector_c.hpp                                             |    9 
 bigmemory-3.6/bigmemory/include/boost/mpl/void.hpp                                                 |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/void_fwd.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/mpl/zip_view.hpp                                             |    6 
 bigmemory-3.6/bigmemory/include/boost/numeric/conversion/converter_policies.hpp                    |    2 
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 bigmemory-3.6/bigmemory/include/boost/numeric/interval/rounded_transc.hpp                          |    2 
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 bigmemory-3.6/bigmemory/include/boost/random/cauchy_distribution.hpp                               |    4 
 bigmemory-3.6/bigmemory/include/boost/random/exponential_distribution.hpp                          |    4 
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 bigmemory-3.6/bigmemory/include/boost/random/geometric_distribution.hpp                            |    4 
 bigmemory-3.6/bigmemory/include/boost/random/lagged_fibonacci.hpp                                  |    6 
 bigmemory-3.6/bigmemory/include/boost/random/lognormal_distribution.hpp                            |    4 
 bigmemory-3.6/bigmemory/include/boost/random/normal_distribution.hpp                               |    4 
 bigmemory-3.6/bigmemory/include/boost/random/poisson_distribution.hpp                              |    4 
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 bigmemory-3.6/bigmemory/include/boost/throw_exception.hpp                                          |   16 
 bigmemory-3.6/bigmemory/include/boost/type_traits/add_pointer.hpp                                  |    2 
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 bigmemory-3.6/bigmemory/include/boost/type_traits/config.hpp                                       |    2 
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 bigmemory-3.6/bigmemory/include/boost/type_traits/extent.hpp                                       |   13 
 bigmemory-3.6/bigmemory/include/boost/type_traits/intrinsics.hpp                                   |   41 
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 bigmemory-3.6/bigmemory/include/boost/type_traits/is_function.hpp                                  |   10 
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 bigmemory-3.6/bigmemory/include/boost/type_traits/is_member_function_pointer.hpp                   |    4 
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 bigmemory-3.6/bigmemory/include/boost/type_traits/is_pointer.hpp                                   |    4 
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 bigmemory-3.6/bigmemory/include/boost/type_traits/is_unsigned.hpp                                  |    9 
 bigmemory-3.6/bigmemory/include/boost/type_traits/is_void.hpp                                      |    5 
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 bigmemory-3.6/bigmemory/include/boost/type_traits/rank.hpp                                         |    8 
 bigmemory-3.6/bigmemory/include/boost/type_traits/remove_all_extents.hpp                           |    2 
 bigmemory-3.6/bigmemory/include/boost/type_traits/remove_bounds.hpp                                |    2 
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 bigmemory-3.6/bigmemory/include/boost/type_traits/remove_reference.hpp                             |    2 
 bigmemory-3.6/bigmemory/include/boost/type_traits/type_with_alignment.hpp                          |    2 
 bigmemory-3.6/bigmemory/man/big.matrix.Rd                                                          |   11 
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 bigmemory-3.6/bigmemory/src/BigMatrix.cpp                                                          |  830 ++++----
 bigmemory-3.6/bigmemory/src/BigMatrix.h                                                            |    1 
 bigmemory-3.6/bigmemory/src/BigMemoryMutex.cpp                                                     |  170 +
 bigmemory-3.6/bigmemory/src/BigMemoryMutex.h                                                       |    1 
 bigmemory-3.6/bigmemory/src/CbigmemoRy.cpp                                                         |   19 
 bigmemory-3.6/bigmemory/src/SharedCounter.cpp                                                      |    1 
 bigmemory-3.6/bigmemory/src/SharedCounter.h                                                        |    1 
 748 files changed, 8906 insertions(+), 5911 deletions(-)

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Package ade4TkGUI updated to version 0.2-4 with previous version 0.2-3 dated 2008-09-21

Author: Jean Thioulouse , Stephane Dray
Title: ade4 Tcl/Tk Graphical User Interface
Description: a Tcl/Tk GUI for some basic functions in the ade4 package

Diff between ade4TkGUI versions 0.2-3 dated 2008-09-21 and 0.2-4 dated 2009-05-04

 DESCRIPTION   |   16 +
 R/ade4TkGUI.R |  472 +++++++++++++++++++++++++++++-----------------------------
 R/ordiClust.R |    4 
 3 files changed, 249 insertions(+), 243 deletions(-)

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Package ascii updated to version 0.1.2 with previous version 0.1.1 dated 2009-04-14

Author: David Hajage
Title: Export R objects to asciidoc or txt2tags
Description: Coerce R object to asciidoc or txt2tags syntax. Package comes with two drivers for Sweave.

Diff between ascii versions 0.1.1 dated 2009-04-14 and 0.1.2 dated 2009-05-04

 DESCRIPTION           |    8 ++++----
 NEWS                  |    7 +++++++
 R/asciiAnova.r        |   22 +++++++++++-----------
 R/asciiDataFrame.r    |    8 ++++----
 R/asciiDefault.r      |    4 ++--
 R/asciiDensity.r      |    4 ++--
 R/asciiGlm.r          |    8 ++++----
 R/asciiHmisc.r        |   11 +++++++++--
 R/asciiHtest.r        |    4 ++--
 R/asciiList.r         |    4 ++--
 R/asciiLm.r           |    8 ++++----
 R/asciiMatrix.r       |    4 ++--
 R/asciiPrcomp.r       |    8 ++++----
 R/asciiSmoothSpline.r |    4 ++--
 R/asciiSummaryTable.r |    4 ++--
 R/asciiSurvival.r     |   10 +++++-----
 R/asciiTable.r        |    4 ++--
 R/asciiTs.r           |    4 ++--
 R/asciiVector.r       |   16 ++++++++--------
 R/misc.r              |   48 +++++++++++++++++++++++++++++++++++++++---------
 R/show.r              |   12 ++++++++----
 Rplots.pdf            |only
 index-ggplot2.pdf     |only
 man/ascii.Rd          |   14 ++++++++++----
 24 files changed, 135 insertions(+), 81 deletions(-)

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Package accuracy updated to version 1.32 with previous version 1.31 dated 2008-11-17

Author: Micah Altman, Jeff Gill, Michael P. McDonald
Title: Tools for testing and improving accuracy of statistical results.
Description: This is a suite of tools designed to test and improve the accuracy of statistical computation, including: Summarization of the sensitivity of linear and non-linear models (lm, glm, mle, nls) to measurement and numerical error; Sensitivity analysis of dozens of models as run through Zelig; A generalized cholesky method for correcting non-invertable Hessians; Tests for the global optimality of non-linear regression and maximum likelihood results; Tools for obtaining true random numbers using entropy collected from the system and/or entropy servers on the internet; A method for converting floating point numbers to normalized fractions; Benchmark data for checking the accuracy of basic distribution functions.

Diff between accuracy versions 1.31 dated 2008-11-17 and 1.32 dated 2009-05-04

 CHANGELOG                             |    2 
 DESCRIPTION                           |   53 -
 R/trueRandom.R                        |   30 
 inst/doc/Rplots.pdf                   | 1650 +++++++++++++++++-----------------
 inst/doc/accuracy_vignette-plot1a.eps |  564 +++++------
 inst/doc/accuracy_vignette-plot1a.pdf |  588 ++++++------
 inst/doc/accuracy_vignette-plot2a.eps |  623 ++++++------
 inst/doc/accuracy_vignette-plot2a.pdf | 1022 ++++++++++-----------
 inst/doc/accuracy_vignette.log        |    4 
 inst/doc/accuracy_vignette.pdf        |binary
 inst/doc/accuracy_vignette.tex        |   24 
 man/dehaan.Rd                         |    8 
 man/disttest.Rd                       |    4 
 man/pzelig.Rd                         |    2 
 man/starr.Rd                          |   10 
 15 files changed, 2317 insertions(+), 2267 deletions(-)

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New package RxCEcolInf with initial version 0.1-1
Package: RxCEcolInf
Type: Package
Title: R x C Ecological Inference With Optional Incorporation of Survey Information
Version: 0.1-1
Date: 2009-04-29
Author: D. James Greiner, Paul Baines, and Kevin M. Quinn
Maintainer: Kevin M. Quinn
Description: Fits the R x C inference model described in Greiner and Quinn (2009). Allows incorporation of survey results.
Depends: MASS, MCMCpack, mvtnorm
License: GPL
Packaged: 2009-04-30 15:13:34 UTC; kquinn
Repository: CRAN
Date/Publication: 2009-05-04 10:17:32

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New package SMIR with initial version 0.01
Package: SMIR
Type: Package
Title: Companion to \emph{Statistical Modelling in R}
Version: 0.01
Date: 2009-5-01
Author: Murray Aitkin, Brian Francis, John Hinde, Ross Darnell
Maintainer: Ross Darnell
Depends: R (>= 2.6.0),
Suggests: lattice, foreign, gdata, car, dglm, gnm, MASS, npmlreg, survival
LazyLoad: no
LazyData: no
Description: This package accompanies Aitkin et al, Statistical Modelling in R, OUP, 2009. The package contains some functions and datasets used in the text.
License: GPL (>= 2)
Packaged: 2009-05-04 04:54:20 UTC; dar143
Repository: CRAN
Date/Publication: 2009-05-04 10:17:37

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Package RSiteSearch updated to version 0.1-5 with previous version 0.1-3 dated 2009-04-29

Author: Sundar Dorai-Raj, Romain Francois and Spencer Graves
Title: RSiteSearch
Description: Alternative interfaces to RSiteSearch

Diff between RSiteSearch versions 0.1-3 dated 2009-04-29 and 0.1-5 dated 2009-05-04

 DESCRIPTION              |    8 ++++----
 R/HTML.RSiteSearch.R     |   10 +++++++++-
 R/RSiteSearch.function.R |   10 +++++++++-
 man/HTML.Rd              |    5 ++---
 4 files changed, 24 insertions(+), 9 deletions(-)

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Package RcmdrPlugin.qcc updated to version 1.0-2 with previous version 1.0-1 dated 2009-01-02

Author: Renan Cortes , contributions of I. Prestes and Suzi Camey
Title: Rcmdr qcc Plug-In
Description: This package provides an Rcmdr "plug-in" based on the qcc package, and it provides an integration between the user and the tools of SPC.

Diff between RcmdrPlugin.qcc versions 1.0-1 dated 2009-01-02 and 1.0-2 dated 2009-05-04

 DESCRIPTION         |   31 ++++++++++--------
 R/RcmdrPlugin.qcc.r |   48 ++++++++++++++--------------
 inst/etc/menus.txt  |   88 ++++++++++++++++++++++++++--------------------------
 3 files changed, 86 insertions(+), 81 deletions(-)

More information about RcmdrPlugin.qcc at CRAN
Permanent link

Package RHRV updated to version 1.6.2 with previous version 1.0 dated 2008-10-28

Author: M. Lado, A. Mendez, D. Olivieri, L. Rodriguez-Linares, X. Vila
Title: Heart rate variability analysis of ECG data
Description: This is a package for developing heart rate variability studies of ECG records

Diff between RHRV versions 1.0 dated 2008-10-28 and 1.6.2 dated 2009-05-04

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 58 files changed, 31 insertions(+), 30 deletions(-)

More information about RHRV at CRAN
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Package FrF2 updated to version 0.92-1 with previous version 0.91-1 dated 2009-04-15

Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional Factorial designs. Furthermore, analysis tools for Fractional Factorial designs with 2-level factors are offered (main effects and interaction plots for all factors simultaneously, cube plot for looking at the simultaneous effects of three factors, full or half normal plot, alias structure in a more readable format than with the built-in function alias). The package is currently subject to intensive development; structures and even function names may change in the future.

Diff between FrF2 versions 0.91-1 dated 2009-04-15 and 0.92-1 dated 2009-05-04

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More information about FrF2 at CRAN
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Package BootPR updated to version 0.57 with previous version 0.56 dated 2008-06-12

Author: Jae. H. Kim
Title: Bootstrap Prediction Intervals and Bias-Corrected Forecasting
Description: Bias-Corrected Forecasting and Bootstrap Prediction Intervals for Autoregressive Time Series

Diff between BootPR versions 0.56 dated 2008-06-12 and 0.57 dated 2009-05-04

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More information about BootPR at CRAN
Permanent link


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