Author: Peter K Dunn
Diff between tweedie versions 1.6.6 dated 2009-06-19 and 1.6.7 dated 2009-06-30
Title: Tweedie exponential family models
Description: Maximum likelihood computations for Tweedie families.
CHANGE.log | 4 ++++
DESCRIPTION | 8 ++++----
R/tweedie.R | 2 +-
man/tweedie-package.Rd | 6 +++---
src/tweedie.f | 14 +++++++-------
5 files changed, 19 insertions(+), 15 deletions(-)
Author: REvolution Computing
Title: Iterator construct for R
Description: Support for iterators, which allow a programmer to
traverse through all the elements of a vector, list, or other
collection of data.
Diff between iterators versions 1.0.0 dated 2009-06-27 and 1.0.1 dated 2009-06-30
DESCRIPTION | 8 ++++---- inst/doc/iterators.pdf |binary 2 files changed, 4 insertions(+), 4 deletions(-)
Author: REvolution Computing
Title: Foreach looping construct for R
Description: Support for the foreach looping construct. Foreach is an
idiom that allows for iterating over elements in a collection,
without the use of an explicit loop counter. This package in
particular is intended to be used for its return value, rather
than for its side effects. In that sense, it is similar to the
standard lapply function, but doesn't require the evaluation of
a function. Using foreach without side effects also
facilitates executing the loop in parallel.
Diff between foreach versions 1.2.0-1 dated 2009-06-27 and 1.2.1 dated 2009-06-30
DESCRIPTION | 8 inst/doc/foreach.pdf | 1539 +++++++++++++++++++++++++-------------------------- man/foreach.Rd | 9 3 files changed, 791 insertions(+), 765 deletions(-)
Author: REvolution Computing
Title: Foreach parallel adaptor for the multicore package
Description: Provides a parallel backend for the %dopar% function using
Simon Urbanek's multicore package.
Diff between doMC versions 1.1.0 dated 2009-06-27 and 1.1.1 dated 2009-06-30
DESCRIPTION | 9 +++++---- R/doMC.R | 27 ++++++++++++++++++++++----- man/registerDoMC.Rd | 20 ++++++++++++++++---- 3 files changed, 43 insertions(+), 13 deletions(-)
Author: Ingmar Visser
Diff between depmixS4 versions 0.2-1 dated 2009-02-23 and 0.2-2 dated 2009-06-30
Title: Dependent Mixture Models
Description: Fit latent (hidden) Markov models on mixed categorical and
continuous (timeseries) data, otherwise known as dependent
mixture models
depmixS4-0.2-1/depmixS4/NEWS |only
depmixS4-0.2-2/depmixS4/DESCRIPTION | 33 ++++++++-----
depmixS4-0.2-2/depmixS4/R/EM.R | 57 ++++++++++++------------
depmixS4-0.2-2/depmixS4/R/depmixfit.R | 2
depmixS4-0.2-2/depmixS4/R/response-class.R | 2
depmixS4-0.2-2/depmixS4/R/responseGLMMULTINOM.R | 2
depmixS4-0.2-2/depmixS4/man/depmixS4-package.Rd | 4 -
depmixS4-0.2-2/depmixS4/man/mix.sim-class.Rd | 10 +---
8 files changed, 57 insertions(+), 53 deletions(-)
Author: Eric Aldrich
Diff between wavelets versions 0.2-4 dated 2009-04-22 and 0.2-5 dated 2009-06-29
Title: A package of funtions for computing wavelet filters, wavelet
transforms and multiresolution analyses
Description: This package contains functions for computing and plotting
discrete wavelet transforms (DWT) and maximal overlap discrete
wavelet transforms (MODWT), as well as their inverses.
Additionally, it contains functionality for computing and
plotting wavelet transform filters that are used in the above
decompositions as well as multiresolution analyses.
DESCRIPTION | 8 ++++----
R/modwt.R | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Author: Tim Coelli, Arne Henningsen
Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier
Production and Cost Functions. Two specifications are
available: the error components specification with time-varying
efficiencies (Battese and Coelli, 1992) and a model
specification in which the firm effects are directly influenced
by a number of variables (Battese and Coelli, 1995).
Diff between frontier versions 0.991-0 dated 2009-06-18 and 0.991-2 dated 2009-06-29
DESCRIPTION | 8 NEWS | 11 R/frontier.R | 2 man/frontier.Rd | 16 src/dis.c | 2 src/front41.f | 47 tests/frontierTest.R | 176 tests/frontierTest.Rout.save |11985 +++++++++++++++++++++++++++++++++++++++---- tests/nestedModels.R | 2 tests/nestedModels.Rout.save | 38 10 files changed, 11236 insertions(+), 1051 deletions(-)
Author: Sanford Weisberg
Diff between dr versions 3.0.3 dated 2008-12-11 and 3.0.4 dated 2009-06-29
Title: Methods for dimension reduction for regression
Description: Functions, methods, and datasets for fitting dimension
reduction regression, using slicing (methods SAVE and SIR),
Principal Hessian Directions (phd, using residuals and the
response), and an iterative IRE. Partial methods, that
condition on categorical predictors are also available. A
variety of tests, and stepwise deletion of predictors, is also
included. Also included is code for computing permutation
tests of dimension. Adding additional methods of estimating
dimension is straightforward. For documentation, see the
vignette in the package. With version 3.0.4, the arguments for
dr.step have been modified.
dr-3.0.3/dr/Rnew |only
dr-3.0.3/dr/inst/doc/.build.timestamp |only
dr-3.0.3/dr/inst/doc/overview.synctex |only
dr-3.0.4/dr/DESCRIPTION | 43 -
dr-3.0.4/dr/NAMESPACE | 2
dr-3.0.4/dr/R/dr.R | 159 ++--
dr-3.0.4/dr/Rv3.0.2 |only
dr-3.0.4/dr/Rwork |only
dr-3.0.4/dr/data/banknote.txt | 402 +++++------
dr-3.0.4/dr/data/mussels.txt | 166 ++--
dr-3.0.4/dr/inst/doc/overview.Rnw | 33
dr-3.0.4/dr/inst/doc/overview.pdf | 1201 ++++++++++++++++------------------
dr-3.0.4/dr/man/dr.directions.Rd | 5
dr-3.0.4/dr/man/drop1.dr.Rd | 12
14 files changed, 1027 insertions(+), 996 deletions(-)
More information about aroma.affymetrix at CRAN
Permanent link
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: RSiteSearch
Description: Alternative interfaces to RSiteSearch
Diff between RSiteSearch versions 1.0-3 dated 2009-05-15 and 1.0-4 dated 2009-06-29
RSiteSearch-1.0-3/RSiteSearch/NAMESPACE |only RSiteSearch-1.0-3/RSiteSearch/inst/brew/results.brew.html |only RSiteSearch-1.0-4/RSiteSearch/DESCRIPTION | 10 +- RSiteSearch-1.0-4/RSiteSearch/NEWS | 6 + RSiteSearch-1.0-4/RSiteSearch/R/HTML.RSiteSearch.R | 2 RSiteSearch-1.0-4/RSiteSearch/R/PackageSum2.R | 20 ++++ RSiteSearch-1.0-4/RSiteSearch/inst/brew/default |only RSiteSearch-1.0-4/RSiteSearch/inst/brew/iframe |only RSiteSearch-1.0-4/RSiteSearch/man/HTML.Rd | 4 RSiteSearch-1.0-4/RSiteSearch/man/PackageSum2.Rd | 66 ++++++++++++-- RSiteSearch-1.0-4/RSiteSearch/man/PackageSummary.Rd | 10 +- RSiteSearch-1.0-4/RSiteSearch/man/RSiteSearch.function.Rd | 3 RSiteSearch-1.0-4/RSiteSearch/man/hits.Rd | 1 RSiteSearch-1.0-4/RSiteSearch/man/sortRSiteSearch.Rd | 1 RSiteSearch-1.0-4/RSiteSearch/man/summary.RSiteSearch.Rd | 4 RSiteSearch-1.0-4/RSiteSearch/man/unionRSiteSearch.Rd | 3 16 files changed, 111 insertions(+), 19 deletions(-)
Author: Lester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and
Mark Fitzgerald
Title: Provides a GUI to several statistical methods useful for causal
assessment.
Description: Using JGR, provides a GUI to several statistical methods -
scatterplot, boxplot, linear regression, generalized linear
regression, quantile, regression, conditional probability
calculations, and regression trees.
Diff between CADStat versions 2.1-17 dated 2009-01-13 and 2.1-21 dated 2009-06-29
CADStat-2.1-17/CADStat/R/bioinfer.JGR.R |only CADStat-2.1-17/CADStat/R/bioinfer1.JGR.r |only CADStat-2.1-17/CADStat/R/bioinfer2.JGR.r |only CADStat-2.1-17/CADStat/R/bioinfer3.JGR.r |only CADStat-2.1-17/CADStat/R/dup.sel.r |only CADStat-2.1-17/CADStat/R/get.duplicates.r |only CADStat-2.1-17/CADStat/R/get.mergedfile.r |only CADStat-2.1-17/CADStat/R/get.mismatch.r |only CADStat-2.1-17/CADStat/R/get.otu.jgr.r |only CADStat-2.1-17/CADStat/man/bioinfer.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer1.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer2.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer3.JGR.Rd |only CADStat-2.1-17/CADStat/man/dup.sel.Rd |only CADStat-2.1-17/CADStat/man/get.duplicates.Rd |only CADStat-2.1-17/CADStat/man/get.mergedfile.Rd |only CADStat-2.1-17/CADStat/man/get.mismatch.Rd |only CADStat-2.1-17/CADStat/man/get.otu.jgr.Rd |only CADStat-2.1-21/CADStat/DESCRIPTION | 33 ++++++++++++++----------- CADStat-2.1-21/CADStat/R/bioinfer.new.JGR.R |only CADStat-2.1-21/CADStat/R/buildresultsXML.R | 8 +++--- CADStat-2.1-21/CADStat/R/cor.JGR.R | 2 - CADStat-2.1-21/CADStat/R/gisdt.subset.R | 6 +++- CADStat-2.1-21/CADStat/R/zzz.R | 10 ++----- CADStat-2.1-21/CADStat/chm |only CADStat-2.1-21/CADStat/inst/.svn |only CADStat-2.1-21/CADStat/inst/doc/.svn |only CADStat-2.1-21/CADStat/inst/java/cadstat.jar |binary CADStat-2.1-21/CADStat/man/bioinfer.new.JGR.Rd |only 29 files changed, 32 insertions(+), 27 deletions(-)
Author: Holger Schabenberger
Title: Spatial count regression
Description: Fit spatial CAR count regression models using MCMC
Diff between spatcounts versions 1.0 dated 2009-06-08 and 1.1 dated 2009-06-29
DESCRIPTION | 8 ++++---- R/Clarketest.R | 3 +-- R/LogLike.R | 23 ++++++++++++++++++----- R/Vuongtest.R | 2 -- man/Clarketest.Rd | 4 ++-- man/DIC.Rd | 2 +- man/LogLike.Rd | 2 +- man/Vuongtest.Rd | 4 ++-- man/est.sc.Rd | 15 +++++++++------ man/spatcounts-package.Rd | 2 +- 10 files changed, 39 insertions(+), 26 deletions(-)
Author: Karline Soetaert
Diff between rootSolve versions 1.3 dated 2009-02-20 and 1.4 dated 2009-06-29
Title: Nonlinear root finding, equilibrium and steady-state analysis of
ordinary differential equations
Description: Routines to find the root of nonlinear functions, and to
perform steady-state and equilibrium analysis of ordinary
differential equations (ODE). Includes routines that: (1)
generate gradient and Jacobian matrices (full and banded), (2)
find roots of non-linear equations by the Newton-Raphson
method, (3) estimate steady-state conditions of a system of
(differential) equations in full, banded or sparse form, using
the Newton-Raphson method, or by dynamically running, (4) solve
the steady-state conditions for uni-and multicomponent 1-D,
2-D, and 3-D partial differential equations, that have been
converted to ODEs by numerical differencing (using the
method-of-lines approach). Includes fortran code.
rootSolve-1.3/rootSolve/R/Roots.r |only
rootSolve-1.3/rootSolve/R/runsteady.r |only
rootSolve-1.3/rootSolve/R/stode.r |only
rootSolve-1.3/rootSolve/R/stodes.r |only
rootSolve-1.3/rootSolve/demo/Jacobandroots.r |only
rootSolve-1.3/rootSolve/inst/doc/rootSolve.rnw |only
rootSolve-1.3/rootSolve/inst/dynload/anoxmod.r |only
rootSolve-1.4/rootSolve/DESCRIPTION | 42
rootSolve-1.4/rootSolve/NAMESPACE | 4
rootSolve-1.4/rootSolve/R/gradient.R |only
rootSolve-1.4/rootSolve/R/hessian.R |only
rootSolve-1.4/rootSolve/R/internal.R |only
rootSolve-1.4/rootSolve/R/jacobian.band.R |only
rootSolve-1.4/rootSolve/R/jacobian.full.R |only
rootSolve-1.4/rootSolve/R/multiroot.R |only
rootSolve-1.4/rootSolve/R/runsteady.R |only
rootSolve-1.4/rootSolve/R/steady.1D.R |only
rootSolve-1.4/rootSolve/R/steady.2D.R |only
rootSolve-1.4/rootSolve/R/steady.3D.R |only
rootSolve-1.4/rootSolve/R/steady.R |only
rootSolve-1.4/rootSolve/R/steady.band.R |only
rootSolve-1.4/rootSolve/R/stode.R |only
rootSolve-1.4/rootSolve/R/stodes.R |only
rootSolve-1.4/rootSolve/R/uniroot.all.R |only
rootSolve-1.4/rootSolve/demo/Jacobandroots.R |only
rootSolve-1.4/rootSolve/demo/Steadystate.R | 1
rootSolve-1.4/rootSolve/inst/CITATION |only
rootSolve-1.4/rootSolve/inst/doc/rootSolve.Rnw |only
rootSolve-1.4/rootSolve/inst/doc/rootSolve.pdf |49044 +++++++++++++------------
rootSolve-1.4/rootSolve/inst/doc/vignettes.bib | 349
rootSolve-1.4/rootSolve/inst/dynload/anoxmod.R |only
rootSolve-1.4/rootSolve/man/gradient.Rd | 70
rootSolve-1.4/rootSolve/man/hessian.Rd | 59
rootSolve-1.4/rootSolve/man/jacobian.band.Rd | 138
rootSolve-1.4/rootSolve/man/jacobian.full.Rd | 106
rootSolve-1.4/rootSolve/man/multiroot.1D.Rd |only
rootSolve-1.4/rootSolve/man/multiroot.Rd | 159
rootSolve-1.4/rootSolve/man/rootSolve.Rd | 64
rootSolve-1.4/rootSolve/man/runsteady.Rd | 425
rootSolve-1.4/rootSolve/man/steady.1D.Rd | 194
rootSolve-1.4/rootSolve/man/steady.2D.Rd | 206
rootSolve-1.4/rootSolve/man/steady.3D.Rd |only
rootSolve-1.4/rootSolve/man/steady.Rd | 111
rootSolve-1.4/rootSolve/man/steady.band.Rd | 127
rootSolve-1.4/rootSolve/man/stode.Rd | 432
rootSolve-1.4/rootSolve/man/stodes.Rd | 283
rootSolve-1.4/rootSolve/man/uniroot.all.Rd | 86
rootSolve-1.4/rootSolve/src/call_runsteady.c | 4
rootSolve-1.4/rootSolve/src/call_steady.c | 2
rootSolve-1.4/rootSolve/src/call_stsparse.c | 21
rootSolve-1.4/rootSolve/src/sparse.f | 411
rootSolve-1.4/rootSolve/src/sparsecoeff.f | 230
rootSolve-1.4/rootSolve/src/steady.f | 10
53 files changed, 28888 insertions(+), 23690 deletions(-)
Author: Christian B. Pipper
Diff between multmod versions 0.3 dated 2009-06-25 and 0.4 dated 2009-06-29
Title: Testing of multiple outcomes
Description: Testing of multiple outcomes using i.i.d. decompositions
DESCRIPTION | 6 +++---
NEWS | 3 ++-
R/amtest.R | 2 +-
man/amtest.Rd | 10 ++++++----
man/mn6.9.Rd | 2 +-
5 files changed, 13 insertions(+), 10 deletions(-)
Author: Martin Schlather
Diff between RandomFields versions 1.3.37 dated 2009-01-26 and 1.3.39 dated 2009-06-29
Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields;
conditional simulation; kriging
DESCRIPTION | 14 ++++++-----
src/MPP.cc | 2 -
src/RFsimu.cc | 6 ++--
src/RFsimu.h | 6 ++--
src/RandomFields.h | 4 +++
src/Xempvario.cc | 4 +--
src/auxiliary.cc | 66 +++++++++++++++++++++++++++++++++++++++++++++++++++++
7 files changed, 87 insertions(+), 15 deletions(-)
Author: Juha Karvanen
Title: Independent component analysis using score functions from the
Pearson system
Description: The Pearson-ICA algorithm is a mutual information-based
method for blind separation of statistically independent source
signals. It has been shown that the minimization of mutual
information leads to iterative use of score functions, i.e.
derivatives of log densities. The Pearson system allows
adaptive modeling of score functions. The flexibility of the
Pearson system makes it possible to model a wide range of
source distributions including asymmetric distributions. The
algorithm is designed especially for problems with asymmetric
sources but it works for symmetric sources as well.
Diff between PearsonICA versions 1.2-3 dated 2008-10-10 and 1.2-4 dated 2009-06-29
DESCRIPTION | 36 ++++++++++++++++++++++-------------- 1 file changed, 22 insertions(+), 14 deletions(-)
Author: Martin Schlather
Diff between MarkedPointProcess versions 0.2.9 dated 2008-08-22 and 0.2.11 dated 2009-06-29
More information about MarkedPointProcess at CRAN
Title: Analysis of Marks of Marked Point Processes
Description: Non-parametric Analysis of the Marks of Marked Point
Processes
DESCRIPTION | 9 ++++++---
src/MPPanalyse.cc | 2 +-
src/MPPbasics.cc | 23 ++++++++++++++++++++---
3 files changed, 27 insertions(+), 7 deletions(-)
Permanent link
Author: Juha Karvanen
Title: L-moments and quantile mixtures
Description: The Lmoments package contains functions to estimate
L-moments and trimmed L-moments from the data. The package also
contains functions to estimate the parameters of the normal
polynomial quantile mixture and the Cauchy polynomial quantile
mixture from L-moments and trimmed L-moments.
Diff between Lmoments versions 1.1-2 dated 2007-02-11 and 1.1-3 dated 2009-06-29
DESCRIPTION | 31 +++++++++++++++++-------------- inst/CITATION | 8 ++++---- inst/News | 5 ++++- man/Lmoments.Rd | 25 +++++++++++++++---------- man/cauchypoly.Rd | 6 +++--- man/covnormpoly4.Rd | 6 +++--- man/data2cauchypoly.Rd | 6 +++--- man/data2normpoly.Rd | 6 +++--- man/normpoly.Rd | 6 +++--- man/t1lmoments.Rd | 6 +++--- 10 files changed, 58 insertions(+), 47 deletions(-)
Author: Philippe Grosjean
Diff between tcltk2 versions 1.0-8 dated 2009-04-24 and 1.0-9 dated 2009-06-28
Title: Tcl/Tk Additions
Description: A series of additional Tk widgets with style and various
functions (under Windows: DDE exchange, access to the registry
and icon manipulation) to supplement the tcltk package.
tcltk2-1.0-8/tcltk2/BinaryFiles |only
tcltk2-1.0-8/tcltk2/R/winSystemFonts.R |only
tcltk2-1.0-8/tcltk2/cleanup |only
tcltk2-1.0-8/tcltk2/inst/doc |only
tcltk2-1.0-8/tcltk2/man/unix/winSystemFonts.Rd |only
tcltk2-1.0-8/tcltk2/man/windows/winSystemFonts.Rd |only
tcltk2-1.0-8/tcltk2/win/bin |only
tcltk2-1.0-8/tcltk2/win/src/winSystemFonts.c |only
tcltk2-1.0-8/tcltk2/win/tklibs/Tktable2.9 |only
tcltk2-1.0-8/tcltk2/win/tklibs/tile0.7.2 |only
tcltk2-1.0-8/tcltk2/win/tklibs/winico0.6/Winico06.dll |only
tcltk2-1.0-9/tcltk2/DESCRIPTION | 8
tcltk2-1.0-9/tcltk2/LICENSE | 1873 +++++++++---------
tcltk2-1.0-9/tcltk2/NAMESPACE | 177 -
tcltk2-1.0-9/tcltk2/NEWS | 49
tcltk2-1.0-9/tcltk2/R/tk2commands.R | 28
tcltk2-1.0-9/tcltk2/R/tk2fonts.R | 21
tcltk2-1.0-9/tcltk2/R/zzz.R | 42
tcltk2-1.0-9/tcltk2/TODO | 109 -
tcltk2-1.0-9/tcltk2/cleanup.win |only
tcltk2-1.0-9/tcltk2/configure.win | 11
tcltk2-1.0-9/tcltk2/inst/CITATION | 6
tcltk2-1.0-9/tcltk2/inst/tklibs/bwidget1.7/ChangeLog | 136 -
tcltk2-1.0-9/tcltk2/inst/tklibs/fonts.tcl | 127 -
tcltk2-1.0-9/tcltk2/man/tcltk2-package.Rd | 12
tcltk2-1.0-9/tcltk2/man/tk2fonts.Rd | 8
tcltk2-1.0-9/tcltk2/man/windows/tk2dde.Rd | 7
tcltk2-1.0-9/tcltk2/win/src/Makevars |only
tcltk2-1.0-9/tcltk2/win/src/Winico06.c |only
29 files changed, 1338 insertions(+), 1276 deletions(-)
Author: Philippe Grosjean, Romain Francois & Kamil Barton
Title: SciViews GUI API - Miscellaneous functions
Description: Supporting functions for the GUI API (various utilitary
functions)
Diff between svMisc versions 0.9-46 dated 2009-01-23 and 0.9-48 dated 2009-06-28
DESCRIPTION | 29 +- NEWS | 10 R/Args.R | 3 R/CallTip.R | 3 R/Complete.R | 3 R/CompletePlus.R | 120 ++++------ R/Parse.R | 17 + R/Sys.tempdir.R | 3 R/Sys.userdir.R | 3 R/TempEnv.R | 3 R/addItems.R | 26 +- R/addTemp.R | 5 R/assignTemp.R | 2 R/captureAll.R | 36 +-- R/changeTemp.R | 3 R/clipsource.R | 7 R/compareRVersion.R | 3 R/def.R | 13 - R/descFun.R | 63 ++--- R/existsTemp.R | 2 R/getEnvironment.R | 3 R/getTemp.R | 5 R/guiCmd.R | 17 - R/helpSearchWeb.R | 4 R/isAqua.R | 3 R/isHelp.R | 5 R/isMac.R | 3 R/isRgui.R | 3 R/isSDI.R | 5 R/isWin.R | 3 R/listMethods.R | 19 - R/listTypes.R | 10 R/objBrowse.R | 9 R/objClear.R | 6 R/objDir.R | 3 R/objInfo.R | 11 R/objList.R | 585 ++++++++++++++++++++++++++-------------------------- R/objMenu.R | 43 +-- R/objSearch.R | 10 R/progress.R | 15 - R/r.R | 8 R/rmTemp.R | 3 R/svMisc-internal.R | 78 ++++-- R/tempvar.R | 4 man/captureAll.Rd | 4 man/objBrowse.Rd | 21 + 46 files changed, 653 insertions(+), 581 deletions(-)
Author: Heloise Lavigne and Aurelien Proye and Jean-Pierre Gattuso.
Portions of code and/or corrections were contributed by
Jean-Marie Epitalon, Andreas Hofmann, Bernard Gentili, Jim Orr
and Karline Soetaert
Title: Calculates parameters of the seawater carbonate system
Description: Calculates parameters of the seawater carbonate system
Diff between seacarb versions 2.1.2 dated 2009-05-25 and 2.1.3 dated 2009-06-28
seacarb-2.1.2/seacarb/R/pHinsi.R |only seacarb-2.1.2/seacarb/data/seacarb_test.txt |only seacarb-2.1.3/seacarb/ChangeLog | 14 ++++++++++++++ seacarb-2.1.3/seacarb/DESCRIPTION | 10 ++++------ seacarb-2.1.3/seacarb/R/carb.R | 10 +++++----- seacarb-2.1.3/seacarb/R/pHinsi.r |only seacarb-2.1.3/seacarb/README |only seacarb-2.1.3/seacarb/data/seacarb_test_P0.txt |only seacarb-2.1.3/seacarb/data/seacarb_test_P300.txt |only seacarb-2.1.3/seacarb/man/carb.Rd | 17 +++++++++-------- seacarb-2.1.3/seacarb/man/pCa.Rd | 3 +++ seacarb-2.1.3/seacarb/man/pTA.Rd | 3 +-- seacarb-2.1.3/seacarb/man/pgas.Rd | 3 +-- seacarb-2.1.3/seacarb/man/pmix.Rd | 3 +-- seacarb-2.1.3/seacarb/man/ppH.Rd | 3 +-- seacarb-2.1.3/seacarb/man/seacarb_test_P0.Rd |only seacarb-2.1.3/seacarb/man/seacarb_test_P300.Rd |only 17 files changed, 39 insertions(+), 27 deletions(-)
Author: Richard Bourgon
Diff between intervals versions 0.12.1 dated 2009-06-14 and 0.12.2 dated 2009-06-28
Title: Tools for working with points and intervals
Description: Tools for working with and comparing sets of points and
intervals.
DESCRIPTION | 10 +++++-----
NAMESPACE | 7 ++++++-
man/Intervals_virtual_or_numeric-class.Rd |only
3 files changed, 11 insertions(+), 6 deletions(-)
Author: Patrick E. Meyer
Title: Information-Theoretic Measures
Description: This package implements various measures of information
theory based on several implemented entropy estimators.
Diff between infotheo versions 1.0.1 dated 2009-06-26 and 1.0.2 dated 2009-06-28
CHANGES | 3 ++- DESCRIPTION | 6 +++--- src/entropy.cpp | 4 ++-- 3 files changed, 7 insertions(+), 6 deletions(-)
Author: Søren Højsgaard
Diff between gRbase versions 1.1.0 dated 2009-04-26 and 1.1.2 dated 2009-06-28
Title: A package for graphical modelling in R
Description: The gRbase package provides certain general constructs
which are used by other graphical modelling packages. This
includes 1) the concept of gmData (graphical meta data), 2)
several graph algorithms 3) facilities for table operations, 4)
functions for testing for conditional independence. gRbase also
illustrates how hierarchical log-linear models (hllm) may be
implemented.
gRbase-1.1.0/gRbase/src/triangmcwh.c |only
gRbase-1.1.2/gRbase/ChangeLog | 11 ++
gRbase-1.1.2/gRbase/DESCRIPTION | 6 -
gRbase-1.1.2/gRbase/R/GraphAlgo-mcs.R | 2
gRbase-1.1.2/gRbase/R/GraphAlgo-rip.R | 130 +++++++++++++++-----------------
gRbase-1.1.2/gRbase/inst/doc/gRbase.pdf |binary
gRbase-1.1.2/gRbase/src/triangmcwh2.c |only
7 files changed, 74 insertions(+), 75 deletions(-)
Author: Reinhard Harter, Kurt Hornik and Stefan Theussl
Title: Symphony in R
Description: An R interface to the SYMPHONY MILP solver (version
5.1.10).
Diff between Rsymphony versions 0.1-8 dated 2009-03-19 and 0.1-9 dated 2009-06-28
DESCRIPTION | 9 src/R_symphony.cc | 3 src/SYMPHONY/BuildTools/coin.m4 | 105 + src/SYMPHONY/BuildTools/commit_new_release | 51 src/SYMPHONY/BuildTools/prepare_new_release | 648 ++++++-- src/SYMPHONY/Cgl/MSVisualStudio/v8/libCgl/libCgl.vcproj | 1 src/SYMPHONY/Cgl/configure | 20 src/SYMPHONY/Cgl/configure.ac | 4 src/SYMPHONY/Cgl/src/CglPreProcess/CglPreProcess.cpp | 39 src/SYMPHONY/Cgl/src/CglProbing/CglProbing.cpp | 21 src/SYMPHONY/Clp/MSVisualStudio/v8/clp/clp.vcproj | 1 src/SYMPHONY/Clp/MSVisualStudio/v8/libClp/libClp.vcproj | 1 src/SYMPHONY/Clp/MSVisualStudio/v9 |only src/SYMPHONY/Clp/configure | 20 src/SYMPHONY/Clp/configure.ac | 4 src/SYMPHONY/Clp/src/ClpPackedMatrix.cpp | 2 src/SYMPHONY/Clp/src/ClpPresolve.cpp | 30 src/SYMPHONY/Clp/src/ClpSimplex.cpp | 12 src/SYMPHONY/Clp/src/ClpSimplexDual.cpp | 164 +- src/SYMPHONY/Clp/src/ClpSimplexPrimal.cpp | 5 src/SYMPHONY/CoinUtils/AUTHORS | 5 src/SYMPHONY/CoinUtils/MSVisualStudio/v8/libCoinUtils/libCoinUtils.vcproj | 1 src/SYMPHONY/CoinUtils/MSVisualStudio/v9 |only src/SYMPHONY/CoinUtils/configure | 20 src/SYMPHONY/CoinUtils/configure.ac | 4 src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp | 2 src/SYMPHONY/CoinUtils/src/CoinLpIO.cpp | 6 src/SYMPHONY/CoinUtils/src/CoinPackedMatrix.cpp | 2 src/SYMPHONY/CoinUtils/src/CoinPresolveDoubleton.cpp | 2 src/SYMPHONY/CoinUtils/src/CoinPresolveDual.cpp | 3 src/SYMPHONY/CoinUtils/src/CoinPresolveTripleton.cpp | 3 src/SYMPHONY/Data/Sample/configure | 20 src/SYMPHONY/Data/Sample/configure.ac | 4 src/SYMPHONY/Externals | 20 src/SYMPHONY/FlopC++/configure | 137 + src/SYMPHONY/FlopC++/configure.ac | 2 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsi/libOsi.vcproj | 1 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiCbc/libOsiCbc.vcproj | 1 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiClp/libOsiClp.vcproj | 1 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiSym/libOsiSym.vcproj | 4 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiVol/libOsiVol.vcproj | 1 src/SYMPHONY/Osi/src/OsiClp/OsiClpSolverInterface.cpp | 6 src/SYMPHONY/Osi/src/OsiCuts.hpp | 9 src/SYMPHONY/Osi/src/OsiPresolve.cpp | 4 src/SYMPHONY/SYMPHONY/MSVisualStudio/sym.mak | 764 ++++------ src/SYMPHONY/SYMPHONY/configure | 20 src/SYMPHONY/SYMPHONY/configure.ac | 2 src/SYMPHONY/ThirdParty/Blas/configure | 20 src/SYMPHONY/ThirdParty/Blas/configure.ac | 4 src/SYMPHONY/ThirdParty/Glpk/INSTALL.Glpk | 8 src/SYMPHONY/ThirdParty/Glpk/Makefile.am | 10 src/SYMPHONY/ThirdParty/Glpk/Makefile.in | 80 - src/SYMPHONY/ThirdParty/Glpk/configure | 9 src/SYMPHONY/ThirdParty/Glpk/configure.ac | 9 src/SYMPHONY/ThirdParty/Glpk/get.Glpk | 2 src/SYMPHONY/ThirdParty/Glpk/glpk.patch | 8 src/SYMPHONY/ThirdParty/Lapack/Makefile.am | 2 src/SYMPHONY/ThirdParty/Lapack/configure | 117 - src/SYMPHONY/ThirdParty/Lapack/configure.ac | 39 src/SYMPHONY/configure | 20 src/SYMPHONY/configure.ac | 4 61 files changed, 1612 insertions(+), 904 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.93 dated 2009-05-25 and 0.94 dated 2009-06-28
DESCRIPTION | 8 - R/DanielPlot.R | 2 R/FrF2.R | 30 +++- R/MEPlot.R | 14 +- R/blockpick.R | 12 + R/leftadjust.R | 12 + R/pb.R | 3 R/remodel.R | 28 ++-- R/splitpick.R | 10 + R/utilcat.R | 75 +++++++++-- inst/NEWS | 23 +++ man/FrF2.Rd | 304 +++++++++++------------------------------------ man/IAPlot.Rd | 23 ++- man/block.Rd |only man/estimable.2fis.Rd |only man/pb.Rd | 22 +++ man/splitplot.Rd |only tests/FrF2test.R | 4 tests/FrF2test.Rout.save | 66 ++++++++-- 19 files changed, 328 insertions(+), 308 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.2 dated 2009-05-27 and 0.3 dated 2009-06-28
DESCRIPTION | 12 +++--- R/fac.design.R | 3 + R/oa.design.R | 3 + inst/NEWS | 7 +++ man/DoE.base-package.Rd | 1 man/class-design.Rd | 46 +++++++++++++++---------- man/export.design.Rd | 11 ++---- man/oa.design.Rd | 85 +++++++++++++++++++++++++++++++++++++----------- 8 files changed, 117 insertions(+), 51 deletions(-)
Author: Thomas Petzoldt
Title: Simulation of ecological (and other) dynamic systems
Description: simecol is an object oriented framework to simulate
ecological (and other) dynamic systems. It can be used for
differential equations, individual-based (or agent-based) and
other models as well. The package helps to organize scenarios
(avoids copy and paste) and improves readability and usability
of code.
Diff between simecol versions 0.6-6 dated 2009-02-26 and 0.6-8 dated 2009-06-27
simecol-0.6-6/simecol/inst/doc/petzoldt_jss.bib |only simecol-0.6-6/simecol/inst/examples/dynload/clotka.cpp |only simecol-0.6-6/simecol/work |only simecol-0.6-8/simecol/DESCRIPTION | 24 simecol-0.6-8/simecol/R/fitOdeModel.R | 23 simecol-0.6-8/simecol/R/iteration.R | 31 simecol-0.6-8/simecol/R/ssqOdeModel.R | 33 simecol-0.6-8/simecol/data/lv3.rda |binary simecol-0.6-8/simecol/inst/FAQ.txt | 17 simecol-0.6-8/simecol/inst/NEWS | 10 simecol-0.6-8/simecol/inst/THANKS | 29 simecol-0.6-8/simecol/inst/ToDo.txt | 14 simecol-0.6-8/simecol/inst/doc/simecol-howtos.Rnw | 574 ++++++++++- simecol-0.6-8/simecol/inst/doc/simecol-howtos.pdf |binary simecol-0.6-8/simecol/inst/doc/simecol-introduction.Rnw | 5 simecol-0.6-8/simecol/inst/doc/simecol-introduction.pdf |binary simecol-0.6-8/simecol/inst/doc/simecol.bib |only simecol-0.6-8/simecol/inst/doc/vignette.cls |only simecol-0.6-8/simecol/inst/examples/dynload/simecol_clotka.R | 5 simecol-0.6-8/simecol/inst/examples/dynload/test_clotka.R | 2 simecol-0.6-8/simecol/inst/examples/fitOdeModel |only simecol-0.6-8/simecol/inst/examples/lv.R | 21 simecol-0.6-8/simecol/inst/examples/lv3.R | 11 simecol-0.6-8/simecol/man/as.simObj.Rd | 7 simecol-0.6-8/simecol/man/fitOdeModel.Rd | 8 simecol-0.6-8/simecol/man/iteration.Rd | 52 simecol-0.6-8/simecol/man/odeModel.Rd | 60 + simecol-0.6-8/simecol/man/plot-methods.Rd | 12 simecol-0.6-8/simecol/man/simecol-package.Rd | 96 + simecol-0.6-8/simecol/man/ssqOdeModel.Rd | 30 30 files changed, 886 insertions(+), 178 deletions(-)
More information about openNLPmodels.es at CRAN
Permanent link
Author: Ingo Feinerer, Kurt Hornik
Title: openNLP Interface
Description: An interface to openNLP (http://opennlp.sourceforge.net/),
a collection of natural language processing tools including a
sentence detector, tokenizer, pos-tagger, shallow and full
syntactic parser, and named-entity detector, using the Maxent
Java package for training and using maximum entropy models.
Diff between openNLP versions 0.0-6 dated 2008-04-14 and 0.0-7 dated 2009-06-27
openNLP-0.0-6/openNLP/inst/doc/openNLP.tex |only openNLP-0.0-6/openNLP/inst/java/maxent-2.4.0.jar |only openNLP-0.0-6/openNLP/inst/java/opennlp-tools-1.3.0.jar |only openNLP-0.0-7/openNLP/DESCRIPTION | 25 +++--- openNLP-0.0-7/openNLP/NAMESPACE | 5 - openNLP-0.0-7/openNLP/R/model.R | 7 + openNLP-0.0-7/openNLP/R/onload.R | 8 - openNLP-0.0-7/openNLP/R/postag.R | 65 +++++++++++----- openNLP-0.0-7/openNLP/R/sentdetect.R | 41 +++++++--- openNLP-0.0-7/openNLP/R/tokenizer.R | 43 +++++++--- openNLP-0.0-7/openNLP/R/transform.R | 12 ++ openNLP-0.0-7/openNLP/R/utils.R |only openNLP-0.0-7/openNLP/inst/doc/openNLP.Rnw | 48 +++++++---- openNLP-0.0-7/openNLP/inst/doc/openNLP.pdf |binary openNLP-0.0-7/openNLP/inst/java/maxent-2.5.2.jar |only openNLP-0.0-7/openNLP/inst/java/opennlp-tools-1.4.3.jar |only openNLP-0.0-7/openNLP/man/sentdetect.Rd | 22 +++-- openNLP-0.0-7/openNLP/man/tagPOS.Rd | 24 +++-- openNLP-0.0-7/openNLP/man/tmSentDetect.Rd | 4 openNLP-0.0-7/openNLP/man/tmTagPOS.Rd | 4 openNLP-0.0-7/openNLP/man/tmTokenize.Rd | 4 openNLP-0.0-7/openNLP/man/tokenize.Rd | 25 +++--- 22 files changed, 221 insertions(+), 116 deletions(-)
More information about openNLPmodels.en at CRAN
Permanent link
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington With contributions from
Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 4.2.2 dated 2009-05-19 and 4.3 dated 2009-06-27
ensembleBMA-4.2.2/ensembleBMA/R/ensembleItime.nsembleData.R |only ensembleBMA-4.3/ensembleBMA/CHANGELOG | 3 ensembleBMA-4.3/ensembleBMA/DESCRIPTION | 8 ensembleBMA-4.3/ensembleBMA/R/controlBMAgamma.R | 6 ensembleBMA-4.3/ensembleBMA/R/controlBMAgamma0.R | 6 ensembleBMA-4.3/ensembleBMA/R/ensembleItime.ensembleData.R |only ensembleBMA-4.3/ensembleBMA/R/fitBMAgamma.R | 88 ++- ensembleBMA-4.3/ensembleBMA/R/fitBMAgamma0.R | 280 +++--------- ensembleBMA-4.3/ensembleBMA/man/controlBMAgamma.Rd | 10 ensembleBMA-4.3/ensembleBMA/man/controlBMAgamma0.Rd | 10 10 files changed, 149 insertions(+), 262 deletions(-)
Author: Julian Taylor
Diff between wgaim versions 0.2-2 dated 2009-05-24 and 0.3 dated 2009-06-26
Title: Whole Genome Average Interval Mapping for QTL detection using
mixed models
Description: This package integrates sophisticated mixed modelling
methods with a whole genome approach to detecting significant
QTL's in linkage maps.
DESCRIPTION | 8 +++---
R/wgaim.R | 63 ++++++++++++++++++++++++++++++++----------------
man/link.map.cross.Rd | 18 ++++++++-----
man/link.map.default.Rd | 11 ++++----
man/link.map.wgaim.Rd | 9 +++---
5 files changed, 68 insertions(+), 41 deletions(-)
Author: Roger Bivand and Danlin Yu
Title: Geographically weighted regression
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Diff between spgwr versions 0.5-12 dated 2009-06-18 and 0.6-2 dated 2009-06-26
ChangeLog | 18 +++ DESCRIPTION | 8 - R/gwr.R | 231 +++++++++++++++++++++++++++++++++++--------------- inst/ChangeLog | 9 + man/LMZ.F3GWR.test.Rd | 8 + man/ggwr.Rd | 3 man/gwr.Rd | 11 +- man/gwr.cv.Rd | 2 8 files changed, 209 insertions(+), 81 deletions(-)
Author: Tuomas Rajala
Title: Segregation measures for multitype spatial point patterns
Description: Functionals and indices for measuring segregation in
multitype spatial point patterns with graph based neighbourhood
description. Included indices: Mingling, Shannon, Simpson (also
the non-spatial) Included functionals: Mingling, Shannon,
Simpson, ISAR. Included neighbourhoods: Geometric, k-nearest
neighbours, Gabriel, Delauney.
Diff between spatialsegregation versions 1.93 dated 2009-03-10 and 2.05 dated 2009-06-26
spatialsegregation-1.93/spatialsegregation/src/dists.cpp |only spatialsegregation-1.93/spatialsegregation/src/dists.h |only spatialsegregation-2.05/spatialsegregation/DESCRIPTION | 24 +- spatialsegregation-2.05/spatialsegregation/R/fclass.R | 4 spatialsegregation-2.05/spatialsegregation/R/fun.R | 53 ++++ spatialsegregation-2.05/spatialsegregation/R/isar.R | 19 + spatialsegregation-2.05/spatialsegregation/R/mingling.R | 4 spatialsegregation-2.05/spatialsegregation/R/modifiers.R | 1 spatialsegregation-2.05/spatialsegregation/R/shannon.R | 20 + spatialsegregation-2.05/spatialsegregation/change.log | 24 ++ spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-ISAR.Rd | 3 spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-mingling.Rd | 2 spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-segregationFun.Rd | 6 spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-shannon.Rd | 11 - spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-simpson.Rd | 2 spatialsegregation-2.05/spatialsegregation/src/Fun.cpp | 2 spatialsegregation-2.05/spatialsegregation/src/Graph.cpp | 109 +++++----- spatialsegregation-2.05/spatialsegregation/src/Graph.h | 9 spatialsegregation-2.05/spatialsegregation/src/Pp.cpp | 51 ++++ spatialsegregation-2.05/spatialsegregation/src/Pp.h | 14 + spatialsegregation-2.05/spatialsegregation/src/isar.cpp | 73 ++++++ spatialsegregation-2.05/spatialsegregation/src/isar.h | 2 spatialsegregation-2.05/spatialsegregation/src/other.cpp |only spatialsegregation-2.05/spatialsegregation/src/other.h |only spatialsegregation-2.05/spatialsegregation/src/rfun.cpp | 19 + spatialsegregation-2.05/spatialsegregation/src/rgraph.cpp | 16 - spatialsegregation-2.05/spatialsegregation/src/shannon.cpp | 72 ++++++ spatialsegregation-2.05/spatialsegregation/src/shannon.h | 1 28 files changed, 413 insertions(+), 128 deletions(-)
More information about spatialsegregation at CRAN
Permanent link
Author: Jerome Sueur
Diff between seewave versions 1.5.4 dated 2009-03-27 and 1.5.5 dated 2009-06-26
Title: Time wave analysis and graphical representation
Description: seewave provides functions for analysing, manipulating,
displaying, editing and synthesizing time waves (particularly
sound). This package processes time analysis (oscillograms and
envelopes), spectral content, resonance quality factor,
entropy, cross correlation and autocorrelation, zero-crossing,
dominant frequency, analytic signal, frequency coherence, 2D
and 3D spectrograms and many other analyses.
DESCRIPTION | 8
NEWS |only
R/seewave.r |10837 ++++++++++++++++++++++++------------------------
inst/doc/seewave_IO.pdf | 1364 +++---
inst/doc/seewave_IO.rnw | 19
man/H.Rd | 126
man/Q.Rd | 150
man/addsilw.Rd | 100
man/afilter.Rd | 112
man/ama.Rd | 136
man/attenuation.Rd | 108
man/autoc.Rd | 134
man/ccoh.Rd | 216
man/ceps.Rd | 198
man/cepstro.Rd | 174
man/coh.Rd | 126
man/convSPL.Rd | 96
man/corenv.Rd | 180
man/corspec.Rd | 216
man/covspectro.Rd | 180
man/crest.Rd |only
man/csh.Rd | 124
man/cutw.Rd | 116
man/dBscale.Rd | 140
man/dBweight.Rd |only
man/deletew.Rd | 112
man/dfreq.Rd | 122
man/diffenv.Rd | 164
man/diffspec.Rd | 194
man/diffwave.Rd | 142
man/dynspec.rd | 212
man/echo.rd | 130
man/env.Rd | 142
man/export.Rd | 94
man/fadew.rd | 112
man/fdoppler.rd | 138
man/ffilter.Rd | 148
man/field.rd | 138
man/fir.Rd | 166
man/ftwindow.Rd | 100
man/fund.Rd | 128
man/hilbert.Rd | 88
man/ifreq.Rd | 164
man/lfs.Rd | 112
man/listen.Rd | 94
man/meanspec.Rd | 256 -
man/mel.Rd | 108
man/moredB.Rd | 78
man/mutew.Rd | 112
man/noise.Rd | 88
man/orni.Rd | 52
man/oscillo.Rd | 240 -
man/oscilloST.Rd | 136
man/pastew.Rd | 136
man/peewit.Rd | 52
man/pellucens.Rd | 68
man/pulse.Rd | 78
man/repw.rd | 80
man/resamp.Rd | 80
man/revw.Rd | 108
man/rmam.Rd | 98
man/rmoffset.Rd | 86
man/rms.Rd |only
man/savewav.Rd | 100
man/seewave.internal.rd | 66
man/seewave.package.Rd | 87
man/setenv.rd | 124
man/sfm.Rd | 92
man/sh.Rd | 108
man/sheep.Rd | 70
man/simspec.Rd | 182
man/spec.Rd | 278 -
man/specprop.Rd | 192
man/spectro.Rd | 315 -
man/spectro3D.Rd | 162
man/synth.Rd | 202
man/th.Rd | 128
man/tico.Rd | 52
man/timer.Rd | 106
man/wasp.rd | 202
man/wf.Rd | 6
man/zapsilw.rd | 90
man/zc.rd | 146
83 files changed, 11254 insertions(+), 10870 deletions(-)
Author: Timothy H. Keitt
Diff between rgdal versions 0.6-8 dated 2009-04-30 and 0.6-9 dated 2009-06-26
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
ChangeLog | 37 +++++++++++
DESCRIPTION | 8 +-
R/ogr.R | 15 ++++
R/ogr_sp.R | 44 +++++++++++--
configure.win | 11 +--
inst/ChangeLog | 44 +++++++++++++
inst/README.windows | 10 +--
inst/vectors/test_trk2.gpx |only
inst/vectors/trin_inca_pl03.dbf |only
inst/vectors/trin_inca_pl03.shp |only
inst/vectors/trin_inca_pl03.shx |only
man/project.Rd | 2
man/readOGR.Rd | 16 ++++-
src/ogr_geom.cpp | 126 ++++++++++++++++++++++++++--------------
src/ogrsource.cpp | 25 +++++++
15 files changed, 271 insertions(+), 67 deletions(-)
Author: William Revelle
Diff between psych versions 1.0-72 dated 2009-06-02 and 1.0-74 dated 2009-06-26
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale
construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. Functions for simulating particular item and test
structures are included. Several functions serve as a useful
front end for structural equation modeling. For more
information, see the personality-project.org/r webpage.
CHANGES | 19
DESCRIPTION | 8
NAMESPACE | 2
R/ICLUST.R | 10
R/ICLUST.cluster.R | 245
R/VSS.R | 2
R/cluster.cor.R | 5
R/cluster.loadings.R | 10
R/cor.plot.R | 2
R/fa.R | 67
R/factor.stats.R | 3
R/factor.wls.R | 17
R/mat.plot.R |only
R/mat.sort.R |only
R/phi.demo.R | 2
R/print.psych.omega.R | 4
R/read.clipboard.csv.R | 11
R/schmid.R | 28
R/sim.structural.R | 5
R/super.matrix.R | 11
R/test.psych.r | 9
fa.indeterm.r |only
factor.indeterm.r |only
inst/NEWS | 14
inst/doc/all.bib | 146
inst/doc/overview.Rnw | 107
inst/doc/overview.pdf |22142 +++++++++++++++++++++++----------------------
inst/doc/psych_for_sem.pdf | 5758 +++++------
man/ICLUST.Rd | 38
man/cluster.loadings.Rd | 3
man/cor.plot.Rd | 6
man/fa.Rd | 19
man/mat.sort.Rd |only
man/omega.Rd | 13
man/phi.demo.Rd | 5
man/read.clipboard.Rd | 6
man/schmid.Rd | 6
man/sim.structural.Rd | 3
man/structure.list.Rd | 2
39 files changed, 15163 insertions(+), 13565 deletions(-)
Author: Sven Adler
Title: WA, WA-PLS, MW and POM for paleolimnology
Description: This package contains functions for paleolimnology -
wa-regression (see also package analogue by G. Simpson!),
wa-pls and the mowing-window approch. The function palplot
allows a first plot of the data including a trend analysis. The
pom function is just a first test version.
Diff between paltran versions 1.0-0 dated 2008-05-05 and 1.1 dated 2009-06-26
paltran-1.0-0/paltran/R/best.wapls.R |only paltran-1.0-0/paltran/R/mwtraf.R |only paltran-1.0-0/paltran/data/age_dud.rda |only paltran-1.0-0/paltran/man/age_dud.Rd |only paltran-1.0-0/paltran/man/best.wapls.Rd |only paltran-1.0-0/paltran/man/mwtraf.Rd |only paltran-1.1/paltran/DESCRIPTION | 33 paltran-1.1/paltran/R/mw.R |only paltran-1.1/paltran/R/palplot.R | 266 +++++-- paltran-1.1/paltran/R/pom.R | 1008 ++++++++++++++++++++--------- paltran-1.1/paltran/R/wa.R | 811 +++++++++++++++++------ paltran-1.1/paltran/R/wapls.R | 987 ++++++++++++++++++++-------- paltran-1.1/paltran/data/age.dud.rda |only paltran-1.1/paltran/data/dud.df.rda |binary paltran-1.1/paltran/data/train_env.MV.rda |binary paltran-1.1/paltran/data/train_set.MV.rda |binary paltran-1.1/paltran/man/age.dud.Rd |only paltran-1.1/paltran/man/dud.df.Rd | 30 paltran-1.1/paltran/man/mw.Rd |only paltran-1.1/paltran/man/palplot.Rd | 96 +- paltran-1.1/paltran/man/paltran-package.Rd |only paltran-1.1/paltran/man/pom.Rd | 118 +-- paltran-1.1/paltran/man/train_env.MV.Rd | 21 paltran-1.1/paltran/man/train_set.MV.Rd | 24 paltran-1.1/paltran/man/wa.Rd | 101 +- paltran-1.1/paltran/man/wapls.Rd | 100 +- 26 files changed, 2453 insertions(+), 1142 deletions(-)
Author: Sebastien Dejean, Ignacio Gonzalez and Kim-Anh Le Cao
Title: Integrate Omics data project
Description: The package supplies two efficients nethodologies:
regularized CCA and sparse PLS to unravel relationships between
two heterogeneous data sets of size (nxp) and (nxq) where the p
and q variables are measured on the same samples or individuals
n. These data may come from high throughput technologies, such
as omics data, among which transcriptomics, metabolomics or
proteomics data that require an integrative or joint analysis.
However, integrOmics can also be applied to any other large
data sets where p+q>>n. rCCA is a regularized version of CCA to
deal with the large number of variables. sPLS allows variable
selection in a one step procedure and two frameworks are
proposed: regression and canonical analysis. Numerous graphical
outputs are provided to help interpreting the results.
Diff between integrOmics versions 1.0 dated 2009-05-17 and 2.1 dated 2009-06-26
integrOmics-1.0/integrOmics/R/img.estim.regul.R |only integrOmics-1.0/integrOmics/R/print.pls.R |only integrOmics-1.0/integrOmics/R/print.summary.R |only integrOmics-1.0/integrOmics/R/rcc.default.R |only integrOmics-1.0/integrOmics/man/img.estim.regul.Rd |only integrOmics-1.0/integrOmics/man/rCCAsPLS-package.Rd |only integrOmics-2.1/integrOmics/DESCRIPTION | 28 integrOmics-2.1/integrOmics/NAMESPACE | 36 integrOmics-2.1/integrOmics/R/estim.regul.R | 8 integrOmics-2.1/integrOmics/R/image.estim.regul.R |only integrOmics-2.1/integrOmics/R/imgCor.R | 4 integrOmics-2.1/integrOmics/R/plotIndiv.R | 251 +++--- integrOmics-2.1/integrOmics/R/plotVar.R | 738 +++++++++---------- integrOmics-2.1/integrOmics/R/pls.R | 12 integrOmics-2.1/integrOmics/R/predict.R | 130 +-- integrOmics-2.1/integrOmics/R/print.methods.R |only integrOmics-2.1/integrOmics/R/rcc.R | 179 ++-- integrOmics-2.1/integrOmics/R/rccNet.R |only integrOmics-2.1/integrOmics/R/spls.R | 399 +++++----- integrOmics-2.1/integrOmics/R/summary.R | 443 +++++------ integrOmics-2.1/integrOmics/R/valid.R | 72 + integrOmics-2.1/integrOmics/man/cim.Rd | 9 integrOmics-2.1/integrOmics/man/estim.regul.Rd | 6 integrOmics-2.1/integrOmics/man/image.estim.regul.Rd |only integrOmics-2.1/integrOmics/man/imgCor.Rd | 7 integrOmics-2.1/integrOmics/man/jet.colors.Rd | 2 integrOmics-2.1/integrOmics/man/linnerud.Rd | 12 integrOmics-2.1/integrOmics/man/liver.toxicity.Rd | 16 integrOmics-2.1/integrOmics/man/multidrug.Rd | 30 integrOmics-2.1/integrOmics/man/nipals.Rd | 2 integrOmics-2.1/integrOmics/man/nutrimouse.Rd | 18 integrOmics-2.1/integrOmics/man/plotIndiv.Rd | 26 integrOmics-2.1/integrOmics/man/plotVar.Rd | 22 integrOmics-2.1/integrOmics/man/pls.Rd | 17 integrOmics-2.1/integrOmics/man/predict.Rd | 20 integrOmics-2.1/integrOmics/man/print.methods.Rd |only integrOmics-2.1/integrOmics/man/rcc-internal.Rd | 2 integrOmics-2.1/integrOmics/man/rcc.Rd | 9 integrOmics-2.1/integrOmics/man/rccNet.Rd |only integrOmics-2.1/integrOmics/man/s.match.Rd | 103 +- integrOmics-2.1/integrOmics/man/scatterutil.Rd | 16 integrOmics-2.1/integrOmics/man/spls.Rd | 19 integrOmics-2.1/integrOmics/man/summary.Rd | 80 -- integrOmics-2.1/integrOmics/man/valid.Rd | 46 - integrOmics-2.1/integrOmics/man/vip.Rd | 2 45 files changed, 1387 insertions(+), 1377 deletions(-)
Author: Patrick E. Meyer
Title: Information-Theoretic Measures
Description: This package implements various measures of information
theory based on several implemented entropy estimators.
Diff between infotheo versions 1.0.0 dated 2009-06-25 and 1.0.1 dated 2009-06-26
DESCRIPTION | 10 +++++----- src/entropy.cpp | 4 ++-- 2 files changed, 7 insertions(+), 7 deletions(-)
Author: Vinzenz Erhardt
Title: Zero Inflated Generalized Poisson (ZIGP) regression models
Description: Fit, analyze and compare GP, ZIP and ZIGP regression
models
Diff between ZIGP versions 3.5 dated 2009-05-13 and 3.6 dated 2009-06-26
ZIGP-3.5/ZIGP/R/FM.r |only ZIGP-3.5/ZIGP/man/FM.rd |only ZIGP-3.5/ZIGP/man/ZIGP-package.rd |only ZIGP-3.6/ZIGP/DESCRIPTION | 8 ++++---- ZIGP-3.6/ZIGP/R/est.zigp.r | 17 ++++++++++++++++- ZIGP-3.6/ZIGP/R/fm.r |only ZIGP-3.6/ZIGP/man/fm.rd |only ZIGP-3.6/ZIGP/man/zigp-package.rd |only 8 files changed, 20 insertions(+), 5 deletions(-)
Author: Greg Snow
Title: Demonstrations for teaching and learning
Description: This package is a set of demonstration functions that can
be used in a classroom to demonstrate statistical concepts, or
on your own to better understand the concepts or the
programming.
Diff between TeachingDemos versions 2.3 dated 2008-07-08 and 2.4 dated 2009-06-26
TeachingDemos-2.3/TeachingDemos/MM_Interact_manual.pdf |only TeachingDemos-2.3/TeachingDemos/MM_interact_fun.R |only TeachingDemos-2.3/TeachingDemos/MichaelMeredith.html |only TeachingDemos-2.3/TeachingDemos/R/strip.shingle.R |only TeachingDemos-2.3/TeachingDemos/man/strip.shingle.Rd |only TeachingDemos-2.4/TeachingDemos/DESCRIPTION | 29 - TeachingDemos-2.4/TeachingDemos/NAMESPACE | 9 TeachingDemos-2.4/TeachingDemos/NEWS | 40 ++ TeachingDemos-2.4/TeachingDemos/R/Pvalue.sim.R |only TeachingDemos-2.4/TeachingDemos/R/R2txt.R | 14 TeachingDemos-2.4/TeachingDemos/R/TkPredict.R |only TeachingDemos-2.4/TeachingDemos/R/gp.splot.R |only TeachingDemos-2.4/TeachingDemos/R/ineq.R |only TeachingDemos-2.4/TeachingDemos/R/loess.demo.R | 8 TeachingDemos-2.4/TeachingDemos/R/mle.demo.R | 2 TeachingDemos-2.4/TeachingDemos/R/mysymbols.R | 181 ++++------ TeachingDemos-2.4/TeachingDemos/R/panel.mysymbols.R |only TeachingDemos-2.4/TeachingDemos/R/plot2script.R | 13 TeachingDemos-2.4/TeachingDemos/R/prob.axis.R |only TeachingDemos-2.4/TeachingDemos/R/range.R |only TeachingDemos-2.4/TeachingDemos/R/shadowtext.R |only TeachingDemos-2.4/TeachingDemos/R/squishplot.R | 4 TeachingDemos-2.4/TeachingDemos/R/subplot.R | 39 +- TeachingDemos-2.4/TeachingDemos/R/tkexamp.R | 95 +++-- TeachingDemos-2.4/TeachingDemos/R/vis.binom.R | 4 TeachingDemos-2.4/TeachingDemos/R/vis.boxcox.R | 3 TeachingDemos-2.4/TeachingDemos/R/vis.gamma.R | 4 TeachingDemos-2.4/TeachingDemos/R/vis.normal.R | 3 TeachingDemos-2.4/TeachingDemos/R/vis.t.R | 5 TeachingDemos-2.4/TeachingDemos/SyncToy_726f062a-4434-4055-9168-9e4dfdf9d479.dat |only TeachingDemos-2.4/TeachingDemos/SyncToy_cc1ca190-d98a-47e0-ad69-312b9db9af9b.dat |only TeachingDemos-2.4/TeachingDemos/data/evap.rda |only TeachingDemos-2.4/TeachingDemos/data/state.vbm.rda |binary TeachingDemos-2.4/TeachingDemos/data/stork.rda |only TeachingDemos-2.4/TeachingDemos/man/Pvalue.sim.Rd |only TeachingDemos-2.4/TeachingDemos/man/TeachingDemos-package.Rd | 15 TeachingDemos-2.4/TeachingDemos/man/TkPredict.Rd |only TeachingDemos-2.4/TeachingDemos/man/clipplot.Rd | 5 TeachingDemos-2.4/TeachingDemos/man/evap.Rd |only TeachingDemos-2.4/TeachingDemos/man/gp.open.Rd | 9 TeachingDemos-2.4/TeachingDemos/man/ineq.Rd |only TeachingDemos-2.4/TeachingDemos/man/ms.polygram.Rd | 2 TeachingDemos-2.4/TeachingDemos/man/panel.mysymbols.Rd |only TeachingDemos-2.4/TeachingDemos/man/slider.Rd | 76 ---- TeachingDemos-2.4/TeachingDemos/man/squishplot.Rd | 6 TeachingDemos-2.4/TeachingDemos/man/state.vbm.Rd | 9 TeachingDemos-2.4/TeachingDemos/man/stork.Rd |only TeachingDemos-2.4/TeachingDemos/man/subplot.Rd | 32 + TeachingDemos-2.4/TeachingDemos/man/tkexamp.Rd | 27 + 49 files changed, 381 insertions(+), 253 deletions(-)
Author: Stefan Theussl and Kurt Hornik
Title: R/GNU Linear Programming Kit Interface
Description: R interface to the GNU Linear Programing Kit (GLPK version
4.37). GLPK is open source software for solving large-scale
linear programming (LP), mixed integer linear programming
(MILP) and other related problems.
Diff between Rglpk versions 0.2-9 dated 2009-03-31 and 0.3-1 dated 2009-06-26
Rglpk-0.2-9/Rglpk/R/sparse.R |only Rglpk-0.3-1/Rglpk/DESCRIPTION | 15 ++++++--------- Rglpk-0.3-1/Rglpk/NAMESPACE | 10 +--------- Rglpk-0.3-1/Rglpk/Rglpk.h |only Rglpk-0.3-1/Rglpk/Rglpk_initialize.c |only Rglpk-0.3-1/Rglpk/Rglpk_read_file.c |only Rglpk-0.3-1/Rglpk/Rglpk_solve.c |only Rglpk-0.3-1/Rglpk/glpapi.h |only Rglpk-0.3-1/Rglpk/glpapi01.c |only Rglpk-0.3-1/Rglpk/glpapi02.c |only Rglpk-0.3-1/Rglpk/glpapi03.c |only Rglpk-0.3-1/Rglpk/glpapi04.c |only Rglpk-0.3-1/Rglpk/glpapi05.c |only Rglpk-0.3-1/Rglpk/glpapi06.c |only Rglpk-0.3-1/Rglpk/glpapi07.c |only Rglpk-0.3-1/Rglpk/glpapi08.c |only Rglpk-0.3-1/Rglpk/glpapi09.c |only Rglpk-0.3-1/Rglpk/glpapi10.c |only Rglpk-0.3-1/Rglpk/glpapi11.c |only Rglpk-0.3-1/Rglpk/glpapi12.c |only Rglpk-0.3-1/Rglpk/glpapi13.c |only Rglpk-0.3-1/Rglpk/glpapi14.c |only Rglpk-0.3-1/Rglpk/glpapi15.c |only Rglpk-0.3-1/Rglpk/glpapi16.c |only Rglpk-0.3-1/Rglpk/glpapi17.c |only Rglpk-0.3-1/Rglpk/glpapi18.c |only Rglpk-0.3-1/Rglpk/glpapi19.c |only Rglpk-0.3-1/Rglpk/glpapi20.c |only Rglpk-0.3-1/Rglpk/glpavl.c |only Rglpk-0.3-1/Rglpk/glpavl.h |only Rglpk-0.3-1/Rglpk/glpbfd.c |only Rglpk-0.3-1/Rglpk/glpbfd.h |only Rglpk-0.3-1/Rglpk/glpbfx.c |only Rglpk-0.3-1/Rglpk/glpbfx.h |only Rglpk-0.3-1/Rglpk/glpcpx.c |only Rglpk-0.3-1/Rglpk/glpcpx.h |only Rglpk-0.3-1/Rglpk/glpdmp.c |only Rglpk-0.3-1/Rglpk/glpdmp.h |only Rglpk-0.3-1/Rglpk/glpdmx.c |only Rglpk-0.3-1/Rglpk/glpfhv.c |only Rglpk-0.3-1/Rglpk/glpfhv.h |only Rglpk-0.3-1/Rglpk/glpgmp.c |only Rglpk-0.3-1/Rglpk/glpgmp.h |only Rglpk-0.3-1/Rglpk/glphbm.c |only Rglpk-0.3-1/Rglpk/glphbm.h |only Rglpk-0.3-1/Rglpk/glpini.h |only Rglpk-0.3-1/Rglpk/glpini01.c |only Rglpk-0.3-1/Rglpk/glpini02.c |only Rglpk-0.3-1/Rglpk/glpios.h |only Rglpk-0.3-1/Rglpk/glpios01.c |only Rglpk-0.3-1/Rglpk/glpios02.c |only Rglpk-0.3-1/Rglpk/glpios03.c |only Rglpk-0.3-1/Rglpk/glpios04.c |only Rglpk-0.3-1/Rglpk/glpios05.c |only Rglpk-0.3-1/Rglpk/glpios06.c |only Rglpk-0.3-1/Rglpk/glpios07.c |only Rglpk-0.3-1/Rglpk/glpios08.c |only Rglpk-0.3-1/Rglpk/glpios09.c |only Rglpk-0.3-1/Rglpk/glpios10.c |only Rglpk-0.3-1/Rglpk/glpipm.c |only Rglpk-0.3-1/Rglpk/glpipm.h |only Rglpk-0.3-1/Rglpk/glpipp.h |only Rglpk-0.3-1/Rglpk/glpipp01.c |only Rglpk-0.3-1/Rglpk/glpipp02.c |only Rglpk-0.3-1/Rglpk/glpk.h |only Rglpk-0.3-1/Rglpk/glplib.h |only Rglpk-0.3-1/Rglpk/glplib01.c |only Rglpk-0.3-1/Rglpk/glplib02.c |only Rglpk-0.3-1/Rglpk/glplib03.c |only Rglpk-0.3-1/Rglpk/glplib04.c |only Rglpk-0.3-1/Rglpk/glplib05.c |only Rglpk-0.3-1/Rglpk/glplib06.c |only Rglpk-0.3-1/Rglpk/glplib07.c |only Rglpk-0.3-1/Rglpk/glplib08.c |only Rglpk-0.3-1/Rglpk/glplib09.c |only Rglpk-0.3-1/Rglpk/glplib10.c |only Rglpk-0.3-1/Rglpk/glplib11.c |only Rglpk-0.3-1/Rglpk/glplib12.c |only Rglpk-0.3-1/Rglpk/glplpf.c |only Rglpk-0.3-1/Rglpk/glplpf.h |only Rglpk-0.3-1/Rglpk/glplpp.h |only Rglpk-0.3-1/Rglpk/glplpp01.c |only Rglpk-0.3-1/Rglpk/glplpp02.c |only Rglpk-0.3-1/Rglpk/glplpx01.c |only Rglpk-0.3-1/Rglpk/glplpx02.c |only Rglpk-0.3-1/Rglpk/glplpx03.c |only Rglpk-0.3-1/Rglpk/glplpx04.c |only Rglpk-0.3-1/Rglpk/glplpx05.c |only Rglpk-0.3-1/Rglpk/glpluf.c |only Rglpk-0.3-1/Rglpk/glpluf.h |only Rglpk-0.3-1/Rglpk/glplux.c |only Rglpk-0.3-1/Rglpk/glplux.h |only Rglpk-0.3-1/Rglpk/glpmat.c |only Rglpk-0.3-1/Rglpk/glpmat.h |only Rglpk-0.3-1/Rglpk/glpmpl.h |only Rglpk-0.3-1/Rglpk/glpmpl01.c |only Rglpk-0.3-1/Rglpk/glpmpl02.c |only Rglpk-0.3-1/Rglpk/glpmpl03.c |only Rglpk-0.3-1/Rglpk/glpmpl04.c |only Rglpk-0.3-1/Rglpk/glpmpl05.c |only Rglpk-0.3-1/Rglpk/glpmpl06.c |only Rglpk-0.3-1/Rglpk/glpmps.c |only Rglpk-0.3-1/Rglpk/glpnet.h |only Rglpk-0.3-1/Rglpk/glpnet01.c |only Rglpk-0.3-1/Rglpk/glpnet02.c |only Rglpk-0.3-1/Rglpk/glpnet03.c |only Rglpk-0.3-1/Rglpk/glpnet04.c |only Rglpk-0.3-1/Rglpk/glpnet05.c |only Rglpk-0.3-1/Rglpk/glpnet06.c |only Rglpk-0.3-1/Rglpk/glpnet07.c |only Rglpk-0.3-1/Rglpk/glpnpp.h |only Rglpk-0.3-1/Rglpk/glpnpp01.c |only Rglpk-0.3-1/Rglpk/glpnpp02.c |only Rglpk-0.3-1/Rglpk/glpqmd.c |only Rglpk-0.3-1/Rglpk/glpqmd.h |only Rglpk-0.3-1/Rglpk/glprgr.c |only Rglpk-0.3-1/Rglpk/glprgr.h |only Rglpk-0.3-1/Rglpk/glprng.h |only Rglpk-0.3-1/Rglpk/glprng01.c |only Rglpk-0.3-1/Rglpk/glprng02.c |only Rglpk-0.3-1/Rglpk/glpscf.c |only Rglpk-0.3-1/Rglpk/glpscf.h |only Rglpk-0.3-1/Rglpk/glpscg.c |only Rglpk-0.3-1/Rglpk/glpscg.h |only Rglpk-0.3-1/Rglpk/glpscl.c |only Rglpk-0.3-1/Rglpk/glpscl.h |only Rglpk-0.3-1/Rglpk/glpsds.c |only Rglpk-0.3-1/Rglpk/glpspm.c |only Rglpk-0.3-1/Rglpk/glpspm.h |only Rglpk-0.3-1/Rglpk/glpspx.h |only Rglpk-0.3-1/Rglpk/glpspx01.c |only Rglpk-0.3-1/Rglpk/glpspx02.c |only Rglpk-0.3-1/Rglpk/glpsql.c |only Rglpk-0.3-1/Rglpk/glpsql.h |only Rglpk-0.3-1/Rglpk/glpssx.h |only Rglpk-0.3-1/Rglpk/glpssx01.c |only Rglpk-0.3-1/Rglpk/glpssx02.c |only Rglpk-0.3-1/Rglpk/glpstd.h |only Rglpk-0.3-1/Rglpk/glptsp.c |only Rglpk-0.3-1/Rglpk/glptsp.h |only Rglpk-0.3-1/Rglpk/inst/CHANGELOG | 6 ++++++ 141 files changed, 13 insertions(+), 18 deletions(-)
Author: Daniel Ho
Diff between MatchIt versions 2.4-10 dated 2009-02-03 and 2.4-11 dated 2009-06-26
Title: MatchIt
Description: MatchIt preprocesses data by selecting approximate matched
samples of the treated and control groups with similar
covariate distributions, drawing on a large variety of matching
methods. After preprocessing data with MatchIt, whatever
standard parametric technique one might have used without
preprocessing can be used, but the results will be far less
model dependent.
DESCRIPTION | 26
R/hist.pscore.R | 49
R/jitter.pscore.R | 31
R/matchit.qqplot.R | 20
R/plot.matchit.R | 6
R/plot.matchit.subclass.R | 8
inst/CITATION |only
inst/doc/balance.tex | 86
inst/doc/figs/hist.pdf | 452
inst/doc/figs/jitterplotnn.pdf | 7126 ++++++++-------
inst/doc/figs/qqplotnn1.pdf | 8146 ++++++++++++++---
inst/doc/index.shtml | 2
inst/doc/matchit.aux | 116
inst/doc/matchit.log | 67
inst/doc/matchit.pdf |19018 +++++++++++++++++++++++++++--------------
inst/doc/matchit.tex | 2
inst/doc/matchit.toc | 84
17 files changed, 23643 insertions(+), 11596 deletions(-)
Author: Christina Stahl and David Meyer
Title: Knowledge Space Theory
Description: Knowledge Space Theory is a set-theoretical framework,
which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The kst-package
provides basic functionalities to generate, handle, and
manipulate knowledge structures and knowledge spaces.
Diff between kst versions 0.1-9 dated 2009-06-24 and 0.1-10 dated 2009-06-26
DESCRIPTION | 8 ++++---- R/reduction.kstructure.R | 2 +- inst/doc/kst.pdf |binary 3 files changed, 5 insertions(+), 5 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.0.1 dated 2009-06-25 and 2.9.0.2 dated 2009-06-25
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 6 +++---
data/IudAdmit.rdata |only
data/IudDiscontinue.rdata |only
data/IudFollowup.rdata |only
man/IudAdmit.rd |only
man/IudDiscontinue.rd |only
man/IudFollowup.rd |only
7 files changed, 3 insertions(+), 3 deletions(-)
Author: Ingo Feinerer, Kurt Hornik
Title: WordNet Interface
Description: An interface to WordNet using the Jawbone Java API to
WordNet. WordNet is an on-line lexical reference system
developed by the Cognitive Science Laboratory at Princeton
University. Its design is inspired by current psycholinguistic
theories of human lexical memory. English nouns, verbs,
adjectives and adverbs are organized into synonym sets, each
representing one underlying lexical concept. Different
relations link the synonym sets.
Diff between wordnet versions 0.1-3 dated 2008-05-02 and 0.1-4 dated 2009-06-25
DESCRIPTION | 31 +++++++++------- NAMESPACE | 2 + R/AAA.R | 4 +- R/dictionary.R | 94 ++++++++++++++++++++++++--------------------------- R/indexterm.R | 20 ++++++---- R/onload.R | 13 +++---- R/synonyms.R | 10 +++-- R/synsets.R | 11 ++++- R/termfilter.R | 18 +++++---- inst/CITATION | 54 +++++++++++++++-------------- inst/doc/wordnet.pdf |binary inst/doc/wordnet.tex |only 12 files changed, 141 insertions(+), 116 deletions(-)
Author: Ingo Feinerer, Kurt Hornik
Title: R/KEA interface
Description: An R interface to KEA (Version 5.0). KEA (for Keyphrase
Extraction Algorithm) allows for extracting keyphrases from
text documents. It can be either used for free indexing or for
indexing with a controlled vocabulary. For more information see
http://www.nzdl.org/Kea/.
Diff between RKEA versions 0.0-1 dated 2008-07-11 and 0.0-2 dated 2009-06-25
DESCRIPTION | 22 ++++++++----- NAMESPACE | 2 + R/kea.R | 87 ++++++++++++++++++++++++++++++++++++++++++++----------- R/onLoad.R | 23 +++++++++----- inst/doc/kea.Rnw | 20 ++++++++---- inst/doc/kea.pdf |binary inst/stopwords |only 7 files changed, 115 insertions(+), 39 deletions(-)
Author: Arnost Komarek
Diff between smoothSurv versions 0.4 dated 2009-04-27 and 0.5-1 dated 2009-06-25
Title: Survival Regression with Smoothed Error Distribution
Description: This package contains primarily a function to fit a
regression model with possibly right, left or interval censored
observations and with the error distrbution expressed as a
mixture of G-splines. Core part of the computation is done in
compiled C++ written using the Scythe Statistical Libary
Version 0.3.
CHANGES | 5 ++++
DESCRIPTION | 8 +++----
R/estimTdiff.R | 25 ++++++++++++++++++---
R/print.estimTdiff.R | 58 +++++++++++++++++++++++++++++++--------------------
man/estimTdiff.Rd | 17 +++++++++-----
man/give.c.Rd | 2 -
6 files changed, 78 insertions(+), 37 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Mariano Devoto, Jochen Fruend, Jose Iriondo and Diego Vazquez,
also based on C-code developed by Nils Bluethgen and by Miguel
Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 0.92 dated 2009-06-03 and 0.93 dated 2009-06-25
.hg/branch.cache | 4 ++-- .hg/dirstate |binary .hg/store/00changelog.i |binary .hg/store/00manifest.i |binary .hg/store/data/_d_e_s_c_r_i_p_t_i_o_n.i |binary .hg/store/data/_r/empty._r.i |binary .hg/store/data/_r/functspec.r.i |binary .hg/store/data/_r/networklevel._r.i |binary .hg/store/data/_r/nodespec.r.i |binary .hg/store/data/_r/plotweb._r.i |binary .hg/store/data/_r/robustness.r.i |only .hg/store/data/_r/second.extinct._r.i |binary .hg/store/data/_r/visweb._r.i |binary .hg/store/data/_r/wine.r.i |only .hg/store/data/_r/zzz._r.i |binary .hg/store/data/_wishlist.txt.i |binary .hg/store/data/data/ollerton2003.rda.i |only .hg/store/data/man/_c.score._rd.i |binary .hg/store/data/man/bipartite-package._rd.i |binary .hg/store/data/man/discrepancy.rd.i |binary .hg/store/data/man/inouye1988._rd.i |binary .hg/store/data/man/nestedness._rd.i |binary .hg/store/data/man/networklevel._rd.i |binary .hg/store/data/man/ollerton2003._rd.i |only .hg/store/data/man/robustness.rd.i |only .hg/store/data/man/swap.web._rd.i |binary .hg/store/data/man/vazquez.example.rd.i |binary .hg/store/data/man/visweb._rd.i |binary .hg/store/data/man/wine.rd.i |only .hg/store/undo |binary .hg/undo.dirstate |binary DESCRIPTION | 10 +++++----- R/robustness.r | 2 +- R/slope.bipartite.R | 8 ++++---- man/bipartite-package.Rd | 14 +++++++++----- 35 files changed, 21 insertions(+), 17 deletions(-)
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Title: Tools for parsing and generating XML within R and S-Plus.
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Diff between XML versions 2.5-1 dated 2009-06-07 and 2.5-3 dated 2009-06-25
Changes | 10 ++++++++ DESCRIPTION | 8 +++--- INSTALL | 2 - configure | 56 ++++++++++++++++++++++++++++++++++++++++++++++ configure.in | 19 +++++++++++++++ man/getRelativeURL.Rd | 2 - man/libxmlVersion.Rd | 3 ++ man/xmlSchemaValidate.Rd | 10 ++++---- src/DocParse.c | 1 src/RS_XML.h | 2 - src/Utils.c | 5 ++-- src/XMLEventParse.c | 2 + src/XMLTree.c | 57 ++++++++++++++++++++++++++++++++++++++--------- src/libxmlFeatures.c | 6 ++++ 14 files changed, 159 insertions(+), 24 deletions(-)
Author: Marc Schwartz
Diff between WriteXLS versions 1.8.0 dated 2009-06-17 and 1.8.1 dated 2009-06-25
Title: Cross-platform Perl based R function to create Excel 2003 (XLS)
files
Description: Cross-platform perl based R function to create Excel (XLS)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it
contains or can be specified by the user.
DESCRIPTION | 12 +++++-------
INSTALL | 7 +++----
R/WriteXLS.R | 5 +++++
R/testPerl.R | 1 -
inst/INSTALL |only
inst/Perl/WriteXLS.pl | 19 +++++++++++--------
man/WriteXLS.Rd | 11 +++++++++--
man/testPerl.Rd | 2 +-
8 files changed, 34 insertions(+), 23 deletions(-)
Author: Stefano Maria Iacus
Title: Simulation and Inference for Stochastic Differential Equations
Description: Companion package to the book Simulation and Inference for
Stochastic Differential Equations With R Examples, ISBN
978-0-387-75838-1, Springer, NY.
Diff between sde versions 2.0.6 dated 2009-06-19 and 2.0.7 dated 2009-06-25
DESCRIPTION | 8 ++++---- R/zzz.R | 2 +- inst/book/ex1.14.R | 6 +++--- inst/doc/changes.txt | 7 +++++++ inst/doc/sde.errata.Rnw |only inst/doc/sde.errata.aux |only inst/doc/sde.errata.log |only inst/doc/sde.errata.pdf |only 8 files changed, 15 insertions(+), 8 deletions(-)
Author: Charles Kooperberg
Diff between polspline versions 1.1.2 dated 2009-01-27 and 1.1.3 dated 2009-06-25
Title: Polynomial spline routines
Description: Routines for the polynomial spline fitting routines hazard
regression, hazard estimation with flexible tails, logspline,
lspec, polyclass, and polymars, by C. Kooperberg and co-authors
DESCRIPTION | 12 +++++++-----
src/polyall.c | 8 ++++----
2 files changed, 11 insertions(+), 9 deletions(-)
Author: Arnost Komarek
Diff between mixAK versions 0.3 dated 2009-05-07 and 0.4 dated 2009-06-25
Title: Mixture of methods including mixtures
Description: This package contains a mixture of statistical methods
including the MCMC methods to analyze normal mixtures
DESCRIPTION | 8 ++--
R/NMixChainsDerived.R |only
R/NMixClust.R |only
R/NMixMCMC.R | 2 -
R/NMixPlugCondDensJoint2.NMixMCMC.R |only
R/NMixPlugCondDensJoint2.R |only
R/NMixPlugCondDensJoint2.default.R |only
R/NMixPlugCondDensMarg.NMixMCMC.R |only
R/NMixPlugCondDensMarg.R |only
R/NMixPlugCondDensMarg.default.R |only
R/NMixPlugDensJoint2.NMixMCMC.R |only
R/NMixPlugDensJoint2.R |only
R/NMixPlugDensJoint2.default.R |only
R/NMixPlugDensMarg.NMixMCMC.R |only
R/NMixPlugDensMarg.R |only
R/NMixPlugDensMarg.default.R |only
R/NMixPredCDFMarg.NMixMCMC.R |only
R/NMixPredCDFMarg.R |only
R/NMixPredCDFMarg.default.R |only
R/NMixPredCondDensJoint2.NMixMCMC.R |only
R/NMixPredCondDensJoint2.R |only
R/NMixPredCondDensJoint2.default.R |only
R/NMixPredCondDensMarg.NMixMCMC.R |only
R/NMixPredCondDensMarg.R |only
R/NMixPredCondDensMarg.default.R |only
R/NMixPredDensJoint2.default.R | 5 +-
R/NMixPredDensMarg.default.R | 3 +
R/NMixSummComp.R |only
R/Y2T.NMixPredCDFMarg.R |only
R/Y2T.NMixPredDensMarg.R |only
R/Y2T.R |only
R/autolayout.R |only
R/plot.NMixPlugCondDensJoint2.R |only
R/plot.NMixPlugCondDensMarg.R |only
R/plot.NMixPlugDensJoint2.R |only
R/plot.NMixPlugDensMarg.R |only
R/plot.NMixPredCDFMarg.R |only
R/plot.NMixPredCondDensJoint2.R |only
R/plot.NMixPredCondDensMarg.R |only
R/plot.NMixPredDensJoint2.R | 70 ++++++++++++++++++++++++++----------
R/plot.NMixPredDensMarg.R | 67 ++++++++++++++++++++++------------
R/print.NMixMCMC.R | 19 +++++++--
R/print.NMixMCMClist.R | 49 +++++++++++++++++++------
R/zzz.R | 6 ++-
inst/CITATION |only
inst/doc/Faithful.pdf |binary
inst/doc/Galaxy.pdf |binary
inst/doc/Tandmob.pdf |binary
inst/doc/index.html | 54 +++++++++++++++++++++++++++
man/NMixChainsDerived.Rd |only
man/NMixClust.Rd |only
man/NMixMCMC.Rd | 15 ++++++-
man/NMixPlugCondDensJoint2.Rd |only
man/NMixPlugCondDensMarg.Rd |only
man/NMixPlugDensJoint2.Rd |only
man/NMixPlugDensMarg.Rd |only
man/NMixPredCDFMarg.Rd |only
man/NMixPredCondDensJoint2.Rd |only
man/NMixPredCondDensMarg.Rd |only
man/NMixPredDensJoint2.Rd | 9 +++-
man/NMixPredDensMarg.Rd | 3 +
man/NMixSummComp.Rd |only
man/Y2T.Rd |only
man/autolayout.Rd |only
man/plot.NMixPlugCondDensJoint2.Rd |only
man/plot.NMixPlugCondDensMarg.Rd |only
man/plot.NMixPlugDensJoint2.Rd |only
man/plot.NMixPlugDensMarg.Rd |only
man/plot.NMixPredCDFMarg.Rd |only
man/plot.NMixPredCondDensJoint2.Rd |only
man/plot.NMixPredCondDensMarg.Rd |only
man/plot.NMixPredDensJoint2.Rd | 18 ++++++---
man/plot.NMixPredDensMarg.Rd | 9 +++-
src/NMix_ChainsDerived.cpp |only
src/NMix_ChainsDerived.h |only
src/NMix_PredCDFMarg.cpp |only
src/NMix_PredCDFMarg.h |only
src/NMix_PredCondDensJoint2.cpp |only
src/NMix_PredCondDensJoint2.h |only
src/NMix_PredCondDensMarg.cpp |only
src/NMix_PredCondDensMarg.h |only
src/NMix_PredDensMarg.cpp | 2 -
82 files changed, 254 insertions(+), 85 deletions(-)
Author: Josh Buckner
Diff between gputools versions 0.1-0 dated 2009-04-19 and 0.1-1 dated 2009-06-25
Title: A few GPU enabled functions
Description: This package provides R interfaces to a handful of common
statistical algorithms. These algorithms are implemented in
parallel using a mixture of nVidia's CUDA langauge and CUBLAS
library. On a computer equiped with an nVidia GPU some of
these functions may be substantially more efficient than native
R routines.
gputools-0.1-0/gputools/src/qrls.cu |only
gputools-0.1-0/gputools/src/qrls.h |only
gputools-0.1-1/gputools/DESCRIPTION | 28 +-
gputools-0.1-1/gputools/NAMESPACE | 5
gputools-0.1-1/gputools/R/gpuGranger.R.in | 49 ++--
gputools-0.1-1/gputools/R/gpuMi.R.in |only
gputools-0.1-1/gputools/R/gpuQr.R.in |only
gputools-0.1-1/gputools/R/gpuSvm.R.in |only
gputools-0.1-1/gputools/configure | 9
gputools-0.1-1/gputools/configure.ac | 3
gputools-0.1-1/gputools/man/getAucEstimate.Rd |only
gputools-0.1-1/gputools/man/gpuGranger.Rd | 47 +++-
gputools-0.1-1/gputools/man/gpuMi.Rd |only
gputools-0.1-1/gputools/man/gpuQr.Rd |only
gputools-0.1-1/gputools/man/gpuSolve.Rd |only
gputools-0.1-1/gputools/man/gpuSvmPredict.Rd |only
gputools-0.1-1/gputools/man/gpuSvmTrain.Rd |only
gputools-0.1-1/gputools/src/Makefile.in | 4
gputools-0.1-1/gputools/src/classification.cu |only
gputools-0.1-1/gputools/src/classification.h |only
gputools-0.1-1/gputools/src/correlation.cu | 64 +++++-
gputools-0.1-1/gputools/src/cuseful.cu | 24 ++
gputools-0.1-1/gputools/src/cuseful.h | 2
gputools-0.1-1/gputools/src/granger.cu | 268 ++++++++++++++++++++------
gputools-0.1-1/gputools/src/granger.h | 6
gputools-0.1-1/gputools/src/lr.cu | 4
gputools-0.1-1/gputools/src/mi.cu |only
gputools-0.1-1/gputools/src/mi.h |only
gputools-0.1-1/gputools/src/qrdecomp.cu |only
gputools-0.1-1/gputools/src/qrdecomp.h |only
gputools-0.1-1/gputools/src/rinterface.cu | 142 +++++++++++++
gputools-0.1-1/gputools/src/rinterface.h | 34 +++
gputools-0.1-1/gputools/src/sort.cu |only
gputools-0.1-1/gputools/src/sort.h |only
34 files changed, 553 insertions(+), 136 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.0.0 dated 2009-06-24 and 2.9.0.1 dated 2009-06-25
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 +++---
R/epicalc.R | 71 ++++++++++++++++++++++++++++++++++++++++++++++++++++++
man/auc.rd |only
man/lagVar.rd |only
man/markVisits.rd |only
5 files changed, 75 insertions(+), 4 deletions(-)
Author: Mark Stevenson
Diff between epiR versions 0.9-17 dated 2009-06-02 and 0.9-18 dated 2009-06-25
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains
functions for directly and indirectly adjusting measures of
disease frequency, quantifying measures of association on the
basis of single or multiple strata of count data presented in a
contingency table, and computing confidence intervals around
incidence risk and incidence rate estimates. Miscellaneous
functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 8
R/epi.2by2.R | 622 +++--
R/zzz.R | 6
doc/epiR.pdf | 6312 ++++++++++++++++++++++++++++----------------------------
man/epi.2by2.Rd | 42
5 files changed, 3549 insertions(+), 3441 deletions(-)
Author: Karline Soetaert
Diff between deSolve versions 1.2-3 dated 2009-01-16 and 1.3 dated 2009-06-25
Title: General solvers for initial value problems of ordinary
differential equations (ODE), partial differential equations
(PDE) and differential algebraic equations (DAE)
Description: Functions that solve initial value problems of a system of
first-order ordinary differential equations (ODE), of partial
differential equations (PDE) and of differential algebraic
equations (DAE). The functions provide an interface to the
FORTRAN functions lsoda, lsodar, lsode, lsodes of the ODEPACK
collection, to the FORTRAN functions dvode and daspk and a
C-implementation of solvers of the Runge-Kutta family with
fixed or variable time steps. The package contains routines
designed for solving ODEs resulting from 1-D, 2-D and 3-D
partial differential equations (PDE) that have been converted
to ODEs by numerical differencing.
deSolve-1.2-3/deSolve/R/densout.R |only
deSolve-1.2-3/deSolve/R/rkAuto.R |only
deSolve-1.2-3/deSolve/R/rkFixed.R |only
deSolve-1.2-3/deSolve/inst/svnversion |only
deSolve-1.2-3/deSolve/man/rkInternal.Rd |only
deSolve-1.2-3/deSolve/src/dbanpre.f |only
deSolve-1.3/deSolve/DESCRIPTION | 40
deSolve-1.3/deSolve/NAMESPACE | 6
deSolve-1.3/deSolve/R/Aquaphy.R | 25
deSolve-1.3/deSolve/R/ccl4model.R | 13
deSolve-1.3/deSolve/R/daspk.R | 676 +++---
deSolve-1.3/deSolve/R/diagnostics.R |only
deSolve-1.3/deSolve/R/euler.R |only
deSolve-1.3/deSolve/R/lsoda.R | 481 ++--
deSolve-1.3/deSolve/R/lsodar.R | 531 ++---
deSolve-1.3/deSolve/R/lsode.R | 228 --
deSolve-1.3/deSolve/R/lsodes.R | 636 +++---
deSolve-1.3/deSolve/R/ode.R | 253 +-
deSolve-1.3/deSolve/R/printmessage.R |only
deSolve-1.3/deSolve/R/rk.R | 288 +-
deSolve-1.3/deSolve/R/rk4.R | 132 +
deSolve-1.3/deSolve/R/rkMethod.R | 21
deSolve-1.3/deSolve/R/vode.R | 536 ++---
deSolve-1.3/deSolve/demo/00Index | 1
deSolve-1.3/deSolve/demo/odedim.R |only
deSolve-1.3/deSolve/demo/rk_solvers.R | 6
deSolve-1.3/deSolve/inst/doc/compiledCode.Rnw | 89
deSolve-1.3/deSolve/inst/doc/compiledCode.pdf | 2065 +++++++++++----------
deSolve-1.3/deSolve/inst/doc/deSolve.Rnw |only
deSolve-1.3/deSolve/inst/doc/deSolve.pdf |only
deSolve-1.3/deSolve/inst/doc/integration.bib |only
deSolve-1.3/deSolve/inst/examples/examples_paper.R | 2
deSolve-1.3/deSolve/inst/wishlist.txt |only
deSolve-1.3/deSolve/man/daspk.Rd | 79
deSolve-1.3/deSolve/man/deSolve.Rd | 65
deSolve-1.3/deSolve/man/diagnostics.Rd |only
deSolve-1.3/deSolve/man/lsoda.Rd | 88
deSolve-1.3/deSolve/man/lsodar.Rd | 51
deSolve-1.3/deSolve/man/lsode.Rd | 59
deSolve-1.3/deSolve/man/lsodes.Rd | 63
deSolve-1.3/deSolve/man/ode.1D.Rd | 21
deSolve-1.3/deSolve/man/ode.2D.Rd | 88
deSolve-1.3/deSolve/man/ode.3D.Rd |only
deSolve-1.3/deSolve/man/ode.Rd | 28
deSolve-1.3/deSolve/man/ode.band.Rd | 17
deSolve-1.3/deSolve/man/rk.Rd | 212 +-
deSolve-1.3/deSolve/man/rk4.Rd | 165 +
deSolve-1.3/deSolve/man/rkMethod.Rd | 75
deSolve-1.3/deSolve/man/vode.Rd | 52
deSolve-1.3/deSolve/src/R_init_deSolve.c | 3
deSolve-1.3/deSolve/src/call_daspk.c | 28
deSolve-1.3/deSolve/src/call_dvode.c | 13
deSolve-1.3/deSolve/src/call_euler.c |only
deSolve-1.3/deSolve/src/call_lsoda.c | 72
deSolve-1.3/deSolve/src/call_rk4.c |only
deSolve-1.3/deSolve/src/call_rkAuto.c |only
deSolve-1.3/deSolve/src/call_rkFixed.c |only
deSolve-1.3/deSolve/src/ddaspk.f | 4
deSolve-1.3/deSolve/src/deSolve.h | 2
deSolve-1.3/deSolve/src/rk_util.c |only
deSolve-1.3/deSolve/src/rk_util.h |only
61 files changed, 3964 insertions(+), 3250 deletions(-)
Author: Paul Murrell
Title: Comparing Objects for Differences
Description: Functions for comparing vectors and data frames.
Diff between compare versions 0.2-1 dated 2009-01-23 and 0.2-2 dated 2009-06-25
DESCRIPTION | 18 ++++++++++-------- NEWS | 32 ++++++++++++++++++++++++++++++++ R/comment.R | 9 +++++++-- R/file.R | 2 +- R/same.R | 27 ++++++++++++++++++++------- inst/doc/compare-intro.pdf |binary inst/doc/fundamentals.pdf |binary 7 files changed, 70 insertions(+), 18 deletions(-)
Author: Jake Bowers
Diff between RItools versions 0.1-6 dated 2009-05-08 and 0.1-7 dated 2009-06-25
Title: Randomization inference tools
Description: Tools for randomization inference.
DESCRIPTION | 8 ++++----
R/xtable.xbal.R | 20 ++++++++++++++++----
man/xtable.xbal.Rd | 2 +-
3 files changed, 21 insertions(+), 9 deletions(-)
Author: Paul Gilbert
Diff between CDNmoney versions 2007.6-1 dated 2007-06-11 and 2009.3-1 dated 2009-06-25
Title: Components of Canadian Monetary and Credit Aggregates
Description: Components of Canadian Credit Aggregates and Monetary
Aggregates with continuity adjustments.
CDNmoney-2007.6-1/CDNmoney/CDNmoney-manual.pdf |only
CDNmoney-2007.6-1/CDNmoney/INDEX |only
CDNmoney-2007.6-1/CDNmoney/help |only
CDNmoney-2009.3-1/CDNmoney/DESCRIPTION | 13
CDNmoney-2009.3-1/CDNmoney/NEWS |only
CDNmoney-2009.3-1/CDNmoney/Rplots.pdf |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianCreditData.R | 408 +--
CDNmoney-2009.3-1/CDNmoney/data/CanadianCreditData.asof.6Mar2009.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.R | 1227 ++++++----
CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.asof.6Mar2009.R |only
CDNmoney-2009.3-1/CDNmoney/inst/doc/CDNmoney.pdf |binary
CDNmoney-2009.3-1/CDNmoney/man/CanadianCreditData.Rd | 44
CDNmoney-2009.3-1/CDNmoney/man/CanadianMoneyData.Rd | 178 -
13 files changed, 1130 insertions(+), 740 deletions(-)
Author: Jae H. Kim
Title: Variance Ratio tests and spectral shape tests for Weak-form
Market Efficiency
Description: A collection of variance ratio and spectral shapte tests
Diff between vrtest versions 0.93 dated 2009-05-08 and 0.94 dated 2009-06-24
DESCRIPTION | 10 +++++----- man/vrtest-package.Rd | 6 +++--- 2 files changed, 8 insertions(+), 8 deletions(-)
Author: Jeff Hallman
Diff between tis versions 1.5 dated 2009-01-03 and 1.6 dated 2009-06-24
Title: Time Indexes and Time Indexed Series
Description: Functions and S3 classes for time indexes and time indexed
series, which are compatible with FAME frequencies.
DESCRIPTION | 23 +++--
NAMESPACE | 6 -
NEWS | 6 +
R/convenientTi.R | 6 -
R/fortify.tis.R |only
R/holidays.R | 201 ++++++++++++++++++++++++++++++++++++++++--------
R/nber.R | 6 -
R/nberShade.ggplot.R |only
R/ti.R | 2
R/tisPlot.R | 2
cleanup | 2
man/cbind.tis.Rd | 2
man/fortify.tis.Rd |only
man/holidays.Rd | 26 ++++--
man/nberShade.Rd | 16 +++
man/nberShade.ggplot.Rd |only
man/scatterPlot.Rd | 2
17 files changed, 236 insertions(+), 64 deletions(-)
Author: Brian Lee Yung Rowe
Title: Provides various portfolio optimization strategies including
random matrix theory and shrinkage estimators
Description: Portfolio optimization typically requires an estimate of a
covariance matrix of asset returns. There are many approaches
for constructing such a covariance matrix, some using the
sample covariance matrix as a starting point. This package
provides implementations for two such methods: random matrix
theory and shrinkage estimation. Each method attempts to clean
or remove noise related to the sampling process from the sample
covariance matrix.
Diff between tawny versions 1.0 dated 2009-04-15 and 1.1.0 dated 2009-06-24
DESCRIPTION | 12 +- R/divergence.R | 51 ++++++++++- R/filter.R |only R/framework.R | 204 ++------------------------------------------- R/random_matrix.R | 52 ++++++----- R/shrinkage.R | 49 +++++++--- R/util.R |only data/sp500.subset.RData |binary man/cov.shrink.Rd | 13 ++ man/divergence.Rd | 11 +- man/filter.RMT.Rd | 23 +++-- man/getPortfolioReturns.Rd | 2 man/optimizePortfolio.Rd | 22 ++++ man/plotPerformance.Rd | 2 man/tawny-package.Rd | 8 - 15 files changed, 194 insertions(+), 255 deletions(-)
Author: Andrew O. Finley
Diff between spBayes versions 0.1-2 dated 2009-03-24 and 0.1-3 dated 2009-06-24
Title: Univariate and Multivariate Spatial Modeling
Description: spBayes fits univariate and multivariate models with
Markov chain Monte Carlo (MCMC).
DESCRIPTION | 8 +--
R/spGLM.R | 20 ++++++---
R/spLM.R | 20 ++++++---
R/spMvGLM.R | 22 +++++++---
R/spMvLM.R | 25 ++++++++---
inst/doc/spBayes-vignette.pdf |binary
man/spGLM.Rd | 92 ++++++++++++++++++++++++++++++++++++------
man/spLM.Rd | 5 +-
man/spMvGLM.Rd | 20 ++++-----
man/spMvLM.Rd | 33 +++++++--------
man/spPredict.Rd | 12 +++--
src/spMvGLM.cpp | 2
src/spMvLM.cpp | 8 +--
13 files changed, 187 insertions(+), 80 deletions(-)
Author: Josef Leydold and Wolfgang H\"ormann
Title: R interface to the UNU.RAN random variate generators
Description: Interface to the UNU.RAN library for Universal Non-Uniform
RANdom variate generators
Diff between Runuran versions 0.9.0 dated 2009-02-26 and 0.10.0 dated 2009-06-24
Runuran-0.10.0/Runuran/DESCRIPTION | 14 Runuran-0.10.0/Runuran/NAMESPACE | 2 Runuran-0.10.0/Runuran/NEWS | 11 Runuran-0.10.0/Runuran/R/Runuran.R | 86 Runuran-0.10.0/Runuran/inst/doc/Runuran.pdf | 3141 +++++----- Runuran-0.10.0/Runuran/inst/doc/src/advanced.Rnw | 8 Runuran-0.10.0/Runuran/inst/doc/src/pitfalls.Rnw | 53 Runuran-0.10.0/Runuran/inst/doc/src/universal.Rnw | 6 Runuran-0.10.0/Runuran/inst/doc/src/version.tex | 2 Runuran-0.10.0/Runuran/man/Runuran-package.Rd | 17 Runuran-0.10.0/Runuran/man/dau.new.Rd | 2 Runuran-0.10.0/Runuran/man/dgt.new.Rd | 3 Runuran-0.10.0/Runuran/man/unuran-class.Rd | 18 Runuran-0.10.0/Runuran/man/unuran.packed-methods.Rd |only Runuran-0.10.0/Runuran/man/uq.Rd | 41 Runuran-0.10.0/Runuran/src/Makevars.in | 4 Runuran-0.10.0/Runuran/src/Runuran.c | 402 + Runuran-0.10.0/Runuran/src/Runuran.h | 40 Runuran-0.10.0/Runuran/src/Runuran_pinv.c |only Runuran-0.10.0/Runuran/src/Runuran_source.h |only Runuran-0.10.0/Runuran/src/unuran-src/distr/cont.c | 26 Runuran-0.10.0/Runuran/src/unuran-src/methods/dgt.c | 26 Runuran-0.10.0/Runuran/src/unuran-src/methods/dgt.h | 1 Runuran-0.10.0/Runuran/src/unuran-src/methods/pinv.c | 3 Runuran-0.10.0/Runuran/src/unuran-src/methods/pinv_info.ch | 2 Runuran-0.10.0/Runuran/src/unuran-src/methods/pinv_init.ch | 47 Runuran-0.10.0/Runuran/src/unuran-src/methods/pinv_newton.ch | 26 Runuran-0.10.0/Runuran/src/unuran-src/methods/pinv_prep.ch | 4 Runuran-0.10.0/Runuran/src/unuran-src/methods/x_gen.c | 3 Runuran-0.10.0/Runuran/src/unuran-src/unuran.h | 1 Runuran-0.10.0/Runuran/src/unuran-src/utils/error.c | 2 Runuran-0.10.0/Runuran/src/unuran-src/utils/lobatto.c | 29 Runuran-0.10.0/Runuran/src/unuran-src/utils/lobatto_source.h | 2 Runuran-0.10.0/Runuran/tests/test_advanced.R | 4 Runuran-0.10.0/Runuran/tests/test_deprecated.R | 4 Runuran-0.10.0/Runuran/tests/test_distributions_cont.R | 4 Runuran-0.10.0/Runuran/tests/test_distributions_discr.R | 4 Runuran-0.10.0/Runuran/tests/test_packed.R |only Runuran-0.10.0/Runuran/tests/test_routines.R | 4 Runuran-0.10.0/Runuran/tests/test_universal.R | 4 Runuran-0.10.0/Runuran/tests/test_unuran.R | 68 Runuran-0.9.0/Runuran/src/unuran-src/distributions/obsolete_gen |only 42 files changed, 2412 insertions(+), 1702 deletions(-)
Author: Originally Michael Lapsley, from Oct 2002 Brian Ripley
Title: ODBC Database Access
Description: An ODBC database interface
Diff between RODBC versions 1.2-5 dated 2009-01-21 and 1.2-6 dated 2009-06-24
RODBC-1.2-5/RODBC/README.orig |only RODBC-1.2-5/RODBC/man/RODBC.Rd |only RODBC-1.2-5/RODBC/man/RODBCtables.Rd |only RODBC-1.2-6/RODBC/ChangeLog | 53 +++- RODBC-1.2-6/RODBC/DESCRIPTION | 15 - RODBC-1.2-6/RODBC/INSTALL |only RODBC-1.2-6/RODBC/R/RODBC.R | 42 ++- RODBC-1.2-6/RODBC/R/sql.R | 122 ++++++---- RODBC-1.2-6/RODBC/R/win.R | 47 ---- RODBC-1.2-6/RODBC/README | 130 +++-------- RODBC-1.2-6/RODBC/inst/README | 130 +++-------- RODBC-1.2-6/RODBC/inst/po |only RODBC-1.2-6/RODBC/inst/tests.R | 54 +--- RODBC-1.2-6/RODBC/man/RODBC-internal.Rd | 5 RODBC-1.2-6/RODBC/man/RODBC-package.Rd |only RODBC-1.2-6/RODBC/man/odbc.Rd | 56 ++-- RODBC-1.2-6/RODBC/man/odbcClose.Rd | 7 RODBC-1.2-6/RODBC/man/odbcConnect.Rd | 69 +++-- RODBC-1.2-6/RODBC/man/odbcDataSources.Rd | 22 + RODBC-1.2-6/RODBC/man/odbcErrors.Rd | 2 RODBC-1.2-6/RODBC/man/odbcGetInfo.Rd | 16 - RODBC-1.2-6/RODBC/man/odbcSetAutoCommit.Rd | 10 RODBC-1.2-6/RODBC/man/setSqlTypeInfo.Rd | 9 RODBC-1.2-6/RODBC/man/sqlColumns.Rd |only RODBC-1.2-6/RODBC/man/sqlCopy.Rd | 22 + RODBC-1.2-6/RODBC/man/sqlDrop.Rd |only RODBC-1.2-6/RODBC/man/sqlFetch.Rd | 36 +-- RODBC-1.2-6/RODBC/man/sqlQuery.Rd | 76 +++--- RODBC-1.2-6/RODBC/man/sqlSave.Rd | 78 +++--- RODBC-1.2-6/RODBC/man/sqlTables.Rd | 69 +++++ RODBC-1.2-6/RODBC/man/sqlTypeInfo.Rd | 32 +- RODBC-1.2-6/RODBC/po/R-RODBC.pot | 13 - RODBC-1.2-6/RODBC/po/R-en@quot.po |only RODBC-1.2-6/RODBC/po/RODBC.pot | 64 ++--- RODBC-1.2-6/RODBC/po/en@quot.po |only RODBC-1.2-6/RODBC/src/RODBC.c | 334 ++++++++++++++++++----------- RODBC-1.2-6/RODBC/tests |only 37 files changed, 844 insertions(+), 669 deletions(-)
Author: Charles J. Geyer
Diff between rcdd versions 1.1-1 dated 2008-09-01 and 1.1-2 dated 2009-06-24
Title: rcdd (Computational Geometry)
Description: R interface to (some of) cddlib, see
http://www.ifor.math.ethz.ch/~fukuda/cdd_home/cdd.html converts
back and forth between two representations of a convex
polytope: as solution of a set of linear equalities and
inequalities and as convex hull of set of points and rays, also
does linear programming and redundant generator elimination
(for example, convex hull in n dimensions), all with exact
infinite-precision rational arithmetic.
rcdd-1.1-1/rcdd/inst/doc/.build.timestamp |only
rcdd-1.1-2/rcdd/CHANGES | 3 +++
rcdd-1.1-2/rcdd/DESCRIPTION | 30 ++++++++++++++++--------------
rcdd-1.1-2/rcdd/inst/doc/vinny.Rnw | 13 ++++++++++++-
rcdd-1.1-2/rcdd/inst/doc/vinny.pdf |binary
rcdd-1.1-2/rcdd/inst/doc/vinny.tex | 5 ++++-
6 files changed, 35 insertions(+), 16 deletions(-)
Author: Graham Williams
Diff between rattle versions 2.4.54 dated 2009-03-24 and 2.4.79 dated 2009-06-24
Title: A graphical user interface for data mining in R using GTK
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
rattle-2.4.54/rattle/man/listRPartRules.Rd |only
rattle-2.4.79/rattle/CITATION | 4
rattle-2.4.79/rattle/DESCRIPTION | 14
rattle-2.4.79/rattle/NAMESPACE | 4
rattle-2.4.79/rattle/R/data.R | 283 +-
rattle-2.4.79/rattle/R/evaluate.R | 114
rattle-2.4.79/rattle/R/explore.R |only
rattle-2.4.79/rattle/R/hclust.R | 6
rattle-2.4.79/rattle/R/help.R | 32
rattle-2.4.79/rattle/R/log.R | 48
rattle-2.4.79/rattle/R/model.R | 60
rattle-2.4.79/rattle/R/projects.R | 68
rattle-2.4.79/rattle/R/random_forest.R | 12
rattle-2.4.79/rattle/R/rattle.R | 2520 +-------------------
rattle-2.4.79/rattle/R/report.R | 3
rattle-2.4.79/rattle/R/rpart.R | 10
rattle-2.4.79/rattle/R/textview.R | 6
rattle-2.4.79/rattle/R/transform.R | 349 +-
rattle-2.4.79/rattle/R/zzz.R | 56
rattle-2.4.79/rattle/data/audit.RData |binary
rattle-2.4.79/rattle/data/weather.RData |binary
rattle-2.4.79/rattle/data/weatherCanberra.RData |only
rattle-2.4.79/rattle/data/weatherSydney.RData |only
rattle-2.4.79/rattle/inst/arff/weather.arff | 762 +++---
rattle-2.4.79/rattle/inst/arff/weatherCanberra.arff |only
rattle-2.4.79/rattle/inst/arff/weatherSydney.arff |only
rattle-2.4.79/rattle/inst/csv/weather.csv | 723 ++---
rattle-2.4.79/rattle/inst/csv/weatherCanberra.csv |only
rattle-2.4.79/rattle/inst/csv/weatherSydney.csv |only
rattle-2.4.79/rattle/inst/etc/rattle.glade | 2299 ++++++++++--------
rattle-2.4.79/rattle/inst/etc/textviews.xml | 143 -
rattle-2.4.79/rattle/inst/etc/tooltips.xml | 4
rattle-2.4.79/rattle/man/asRules.Rd |only
rattle-2.4.79/rattle/man/asRules.rpart.Rd |only
rattle-2.4.79/rattle/man/drawTreeNodes.Rd | 2
rattle-2.4.79/rattle/man/internal.Rd | 4
rattle-2.4.79/rattle/man/plotRisk.Rd | 5
rattle-2.4.79/rattle/man/weather.Rd | 24
38 files changed, 2957 insertions(+), 4598 deletions(-)
Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve
Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.24-5 dated 2009-06-07 and 0.24-7 dated 2009-06-24
pomp-0.24-5/pomp/R/mvnorm.R |only pomp-0.24-7/pomp/DESCRIPTION | 13 +++---- pomp-0.24-7/pomp/NAMESPACE | 1 pomp-0.24-7/pomp/R/nlf-guts.R | 28 --------------- pomp-0.24-7/pomp/inst/ChangeLog | 16 +++++++++ pomp-0.24-7/pomp/inst/doc/advanced_topics_in_pomp.pdf |binary pomp-0.24-7/pomp/inst/doc/intro_to_pomp.pdf |binary pomp-0.24-7/pomp/src/initstate.c | 32 +++++++++++++----- pomp-0.24-7/pomp/src/lookup_table.c | 1 9 files changed, 49 insertions(+), 42 deletions(-)
Author: Graham Williams, Michael Hahsler (arules), Zementis Inc, Hemant
Ishwaran, Udaya B. Kogalur, Rajarshi Guha
Title: Generate PMML for various models
Description: The Predictive Modelling Markup Language (PMML) is a
language for representing models, in an application independent
way. Such models can then be loaded into other applications
supporting PMML, including ADAPA from Zementis, Teradata
Warehouse Miner and IBM's DB2. The package provides a generic
pmml function to generate pmml for an object. Using a S3
generic function the approriate method for the class of the
supplied object is dispatched. The package currently supports
the export of PMML for linear regression, SVMs, rpart
classification trees, randomSurvivalForest forest models, and
kmeans clusters. This package is part of the Rattle toolkit.
Diff between pmml versions 1.2.10 dated 2009-03-09 and 1.2.15 dated 2009-06-24
DESCRIPTION | 37 ++++--- NAMESPACE | 2 R/pmml.R | 246 +++++++++++++++++++++++++++++++++++++++------------ R/pmml.arules.R | 2 R/pmml.lm.R | 29 ++++-- R/pmml.rpart.R | 36 ++++++- man/pmml.Rd | 8 + man/pmml.arules.Rd | 2 man/pmmlCanExport.Rd |only 9 files changed, 277 insertions(+), 85 deletions(-)
Author: Hadley Wickham
Diff between plyr versions 0.1.8 dated 2009-04-21 and 0.1.9 dated 2009-06-24
Title: Tools for splitting, applying and combining data
Description: plyr is a set of tools that solves a common set of
problems: you need to break a big problem down into manageable
pieces, operate on each pieces and then put all the pieces back
together. For example, you might want to fit a model to each
spatial location or time point in your study, summarise data by
panels or collapse high-dimensional arrays to simpler summary
statistics.
DESCRIPTION | 6 +++---
NEWS | 8 ++++++++
R/helper-summarise.r |only
R/quote.r | 20 ++++++++++++++++++--
R/rbind.r | 10 ++++++----
R/simplify-vector.r | 3 ++-
R/split-data-frame.r | 2 +-
man/as-quoted-3f.rd | 3 +++
man/rbind-fill-di.rd | 11 ++++++++++-
man/summarise-n4.rd |only
10 files changed, 51 insertions(+), 12 deletions(-)
Author: Thomas A. Gerds
Title: Prediction Error Curves for Survival Models
Description: Validation of predicted surival probabilities using
inverse weighting and resampling.
Diff between pec versions 1.1.0 dated 2009-04-15 and 1.1.1 dated 2009-06-24
DESCRIPTION | 6 +++--- man/R2crps.Rd | 2 ++ man/ipcw.Rd | 5 +++-- src/pec.c | 4 ++-- 4 files changed, 10 insertions(+), 7 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.08-02 dated 2009-06-19 and 0.08-03 dated 2009-06-24
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 12 ++++++++++++
DESCRIPTION | 8 ++++----
R/mi.R | 10 +++++-----
R/mi.binary.R | 2 +-
R/mi.continuous.R | 2 +-
R/mi.count.R | 2 +-
R/mi.pmm.R | 2 +-
7 files changed, 25 insertions(+), 13 deletions(-)
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Stéphane Dray, David Forrest, Patrick Giraudoux, Duncan
Golicher, Virgilio Gómez Rubio, Patrick Hausmann, Thomas
Jagger, Sebastian P. Luque, Don MacQueen, Andrew Niccolai and
Tom Short
Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Diff between maptools versions 0.7-23 dated 2009-05-27 and 0.7-25 dated 2009-06-24
ChangeLog | 10 ++++++++++ DESCRIPTION | 8 ++++---- R/SpatialPolys-methods.R | 12 +++++++++--- inst/ChangeLog | 10 ++++++++++ 4 files changed, 33 insertions(+), 7 deletions(-)
Author: Deepayan Sarkar
Diff between latticeExtra versions 0.5-4 dated 2008-11-02 and 0.6-1 dated 2009-06-24
Title: Extra Graphical Utilities Based on Lattice
Description: Extra graphical utilities based on lattice
DESCRIPTION | 11 -
NAMESPACE | 15 +
R/c.trellis.R | 342 ++++++++++++++++++++++-----------------
R/doubleYScale.R |only
R/layer.R | 425 ++++++++++++++-----------------------------------
R/marginal.plot.R | 317 ++++++++++++++++++------------------
R/panel.3dmisc.R | 2
R/panel.lmlineq.R |only
R/segplot.R | 17 +
R/tileplot.R | 228 +++++++++++++-------------
data/EastAuClimate.txt |only
inst/NEWS | 22 ++
man/EastAuClimate.Rd |only
man/as.layer.Rd | 81 +++------
man/c.trellis.Rd | 75 +++++---
man/doubleYScale.Rd |only
man/marginal.plot.Rd | 25 +-
man/panel.lmlineq.Rd |only
man/panel.segplot.Rd | 12 -
19 files changed, 752 insertions(+), 820 deletions(-)
Author: Christina Stahl and David Meyer
Title: Knowledge Space Theory
Description: Knowledge Space Theory is a set-theoretical framework,
which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The kst-package
provides basic functionalities to generate, handle, and
manipulate knowledge structures and knowledge spaces.
Diff between kst versions 0.1.8 dated 2009-01-09 and 0.1-9 dated 2009-06-24
DESCRIPTION | 31 +++++++++++++++++-------------- R/reduction.kstructure.R | 2 +- inst/doc/kst.Rnw | 5 ----- inst/doc/kst.pdf |binary man/plot.Rd | 8 -------- 5 files changed, 18 insertions(+), 28 deletions(-)
Author: Tarn Duong
Diff between ks versions 1.6.3 dated 2009-04-04 and 1.6.5 dated 2009-06-24
Title: Kernel smoothing
Description: Kernel density estimators and kernel discriminant analysis
for multivariate data
ks-1.6.3/ks/R-future |only
ks-1.6.5/ks/DESCRIPTION | 8 +--
ks-1.6.5/ks/R/binning.R | 67 ++++++++++++++++++--------------
ks-1.6.5/ks/R/kda.R | 26 +++++++-----
ks-1.6.5/ks/R/kdde.R | 12 +++--
ks-1.6.5/ks/R/kde.R | 88 +++++++++++++++++++++++++------------------
ks-1.6.5/ks/R/mise.R | 4 -
ks-1.6.5/ks/R/normal.R | 35 ++++++++++-------
ks-1.6.5/ks/R/selector.R | 2
ks-1.6.5/ks/README | 13 +++++-
ks-1.6.5/ks/inst/doc/kde.pdf |binary
ks-1.6.5/ks/man/binning.Rd | 3 -
ks-1.6.5/ks/man/drvkde.Rd | 4 -
ks-1.6.5/ks/man/kda.kde.Rd | 10 +++-
ks-1.6.5/ks/man/kde.Rd | 8 ++-
ks-1.6.5/ks/src/linbin.f | 15 +++----
ks-1.6.5/ks/src/linbin2D.f | 12 ++---
ks-1.6.5/ks/src/linbin3D.f | 20 ++++-----
ks-1.6.5/ks/src/linbin4D.f | 76 ++++++++++++++++++++++---------------
19 files changed, 239 insertions(+), 164 deletions(-)
Author: Christian Roever, Nils Raabe, Karsten Luebke, Uwe Ligges, Gero
Szepannek, Marc Zentgraf
Title: Classification and visualization
Description: Miscellaneous functions for classification and
visualization developed at the Fakultaet Statistik, Technische
Universitaet Dortmund
Diff between klaR versions 0.5-8 dated 2009-01-09 and 0.5-9 dated 2009-06-24
DESCRIPTION | 33 +++++++++++++++++++-------------- R/partimat.R | 5 +++-- 2 files changed, 22 insertions(+), 16 deletions(-)
Author: Achim Zeileis, Bettina Gruen
Title: Automatic Generation of Standardized Exams for Large-Lecture
Courses
Description: Sweave-based automatic generation of exams with
multiple-choice questions and arithmetic problems.
Diff between exams versions 1.0-0 dated 2009-02-20 and 1.0-1 dated 2009-06-24
DESCRIPTION | 13 ++++++++----- NEWS | 8 ++++++++ inst/doc/exams.Rnw | 2 +- inst/doc/exams.pdf |binary inst/exercises/anova.Rnw | 2 +- man/exams.Rd | 14 +++++++------- 6 files changed, 25 insertions(+), 14 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.8.1.1 dated 2009-02-15 and 2.9.0.0 dated 2009-06-24
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 26 ++++++++++++++------------
R/epicalc.R | 1 +
2 files changed, 15 insertions(+), 12 deletions(-)
Author: Roger D. Peng
Diff between cacher versions 1.0 dated 2008-12-21 and 1.1 dated 2009-06-24
Title: Tools for caching and distributing statistical analyses
Description: This package provides tools for caching statistical
analyses in key-value databases which can subsequently be
distributed over the web.
DESCRIPTION | 17 +++++---
NAMESPACE | 6 +++
R/cacheDB.R | 6 ++-
R/utils.R | 8 +++-
R/verify.R | 22 ++++++-----
R/vizcache.R | 103 +++++++++++++++++++++++++++++++++++++++++++---------
TODO | 2 +
inst/doc/cacher.pdf |binary
man/cache.Rd | 13 ++++--
man/code.Rd | 2 -
man/graphcode.Rd |only
man/objectcode.Rd |only
man/package.Rd | 10 ++++-
13 files changed, 146 insertions(+), 43 deletions(-)
Author: Jose Claudio Faria & Clarice Garcia Borges Demetrio
Title: Biplot of Multivariate Data Based on Principal Components
Analysis
Description: Implements biplot (2d and 3d) of multivariate data based
on principal components analysis and diagnostic tools of the
quality of the reduction.
Diff between bpca versions 1.0.2 dated 2008-08-17 and 1.0.3 dated 2009-06-24
bpca-1.0.2/bpca/demo/bpca.lbd2-4.static.3d.R |only bpca-1.0.3/bpca/ChangeLog | 7 ++ bpca-1.0.3/bpca/DESCRIPTION | 31 ++++----- bpca-1.0.3/bpca/R/plot.bpca.2d.R | 31 +++++---- bpca-1.0.3/bpca/R/plot.bpca.3d.R | 82 +++++++++++------------- bpca-1.0.3/bpca/demo/00Index | 28 ++++---- bpca-1.0.3/bpca/demo/bpca.R | 68 +------------------ bpca-1.0.3/bpca/demo/bpca.dinamic.3d.R | 19 ++++- bpca-1.0.3/bpca/demo/bpca.lambda2_4.static.3d.R |only bpca-1.0.3/bpca/demo/bpca.static.2d.R | 8 +- bpca-1.0.3/bpca/demo/bpca.static.3d.R | 10 +- bpca-1.0.3/bpca/demo/comparation.R | 9 +- bpca-1.0.3/bpca/demo/dt.tools.R | 1 bpca-1.0.3/bpca/demo/gge.check.R | 9 +- bpca-1.0.3/bpca/demo/iris.R | 6 + bpca-1.0.3/bpca/demo/iris.var.rd.R | 8 +- bpca-1.0.3/bpca/demo/rock.var.rd.R | 11 ++- bpca-1.0.3/bpca/demo/var.rb.2d.R | 6 + bpca-1.0.3/bpca/demo/var.rb.3d.R | 6 + bpca-1.0.3/bpca/demo/var.rd.2d.R | 6 + bpca-1.0.3/bpca/man/bpca-package.Rd | 20 +++-- bpca-1.0.3/bpca/man/bpca.Rd | 81 +++++++++++++---------- bpca-1.0.3/bpca/man/dt.tools.Rd | 1 bpca-1.0.3/bpca/man/gabriel1971.Rd | 2 bpca-1.0.3/bpca/man/plot.Rd | 38 ++++++----- bpca-1.0.3/bpca/man/qbpca.Rd | 8 +- bpca-1.0.3/bpca/man/summary.Rd | 1 bpca-1.0.3/bpca/man/var.rbf.Rd | 1 bpca-1.0.3/bpca/man/var.rdf.Rd | 7 +- bpca-1.0.3/bpca/pdf |only 30 files changed, 262 insertions(+), 243 deletions(-)
Author: Michael J. Kane and John W. Emerson
Title: Manage massive matrices in R using C++, with support for shared
memory and memory-mapped files.
Description: Use C++ to create, store, access, and manipulate massive
matrices. Matrices may optionally be allocated to shared
memory and/or may use memory-mapped files.
Diff between bigmemory versions 3.8 dated 2009-06-10 and 3.9 dated 2009-06-24
bigmemory-3.8/bigmemory/COPYING |only bigmemory-3.8/bigmemory/NAMESPACE |only bigmemory-3.8/bigmemory/configure |only bigmemory-3.8/bigmemory/include/boost/array.hpp |only bigmemory-3.8/bigmemory/include/boost/cstdint.hpp |only bigmemory-3.8/bigmemory/include/boost/detail |only bigmemory-3.8/bigmemory/include/boost/exception |only bigmemory-3.8/bigmemory/include/boost/interprocess |only bigmemory-3.8/bigmemory/include/boost/io_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/O1_size.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/advance.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/advance_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/alias.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/always.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/and.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/apply.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/apply_wrap.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/arg_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/arithmetic.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/at.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/at_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/O1_size_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/adl_barrier.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/advance_backward.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/advance_forward.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/apply_1st.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/arg_typedef.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/arithmetic_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/arity.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/arity_spec.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/at_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/back_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/basic_bind.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/begin_end_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/clear_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/common_name_wknd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/comparison_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/config |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/contains_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/count_args.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/count_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/empty_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/erase_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/erase_key_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/filter_iter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/find_if_pred.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/fold_impl_body.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/fold_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/fold_pred.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/front_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/full_lambda.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_apply.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_begin.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_key_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_rebind.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_size.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_tag.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_type.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/include_preprocessed.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/insert_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/insert_range_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/inserter_algorithm.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/integral_wrapper.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/is_msvc_eti_arg.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/iter_apply.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/iter_fold_if_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/iter_fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/iter_push_front.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/joint_iter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/lambda_arity_param.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/lambda_no_ctps.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/lambda_spec.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/lambda_support.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/largest_int.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/logical_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/msvc_dtw.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/msvc_eti_base.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/msvc_is_class.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/msvc_never_true.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/msvc_type.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/na.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/na_assert.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/na_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/na_spec.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/nested_type_wknd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/nttp_decl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/numeric_cast_utils.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/numeric_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/order_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/overload_names.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/partition_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/pop_back_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/pop_front_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/bcc |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/bcc551 |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/dmc |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/gcc |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/mwcw |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/advance_backward.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/advance_forward.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/and.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/apply.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/apply_wrap.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/basic_bind.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/bind_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/bitor.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/deque.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/divides.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/equal_to.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/full_lambda.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/greater.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/greater_equal.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/inherit.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/iter_fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/lambda_no_ctps.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/less.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/list_c.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/map.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/modulus.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/not_equal_to.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/plus.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/quote.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/reverse_fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/set.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/set_c.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/shift_right.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/template_arity.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/vector.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessor |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/ptr_to_ref.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/push_back_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/push_front_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/range_c |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/reverse_fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/reverse_fold_impl_body.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/reverse_iter_fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/sequence_wrapper.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/shift_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/single_element_iter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/size_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/sort_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/static_cast.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/template_arity.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/template_arity_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/test |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/test.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/traits_lambda_spec.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/transform_iter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/type_wrapper.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/unwrap.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/value_wknd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/yes_no.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/back.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/back_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/begin.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/begin_end.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/begin_end_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/bind_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/bitand.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/bitor.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/bitwise.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/bool_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/clear.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/clear_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/comparison.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/contains.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/contains_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/copy.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/copy_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/count.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/count_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/count_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/deque.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/distance.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/distance_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/divides.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/empty.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/empty_base.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/empty_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/end.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/equal.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/equal_to.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/erase.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/erase_key.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/find.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/find_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/fold.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/for_each.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/front.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/front_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/front_inserter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/greater.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/greater_equal.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/has_key.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/has_key_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/index_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/index_of.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/inherit.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/insert.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/insert_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/insert_range.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/inserter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/integral_c.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/integral_c_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/is_placeholder.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/is_sequence.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/iter_fold.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/iter_fold_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/iterator_category.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/iterator_range.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/iterator_tags.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/key_type.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/key_type_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/lambda.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/lambda_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/less.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/limits |only bigmemory-3.8/bigmemory/include/boost/mpl/list |only bigmemory-3.8/bigmemory/include/boost/mpl/list.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/list_c.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/logical.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/long.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/long_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/map |only bigmemory-3.8/bigmemory/include/boost/mpl/map.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/max.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/min.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/min_element.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/min_max.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/modulus.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/multiplies.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/multiset |only bigmemory-3.8/bigmemory/include/boost/mpl/next_prior.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/not.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/not_equal_to.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/numeric_cast.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/order.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/pair.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/partition.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/plus.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/pop_front.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/pop_front_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/print.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/push_back.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/push_back_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/push_front_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/quote.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/range_c.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/remove.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/replace.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/replace_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/reverse.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/reverse_fold.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/reverse_iter_fold.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/set |only bigmemory-3.8/bigmemory/include/boost/mpl/set.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/set_c.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/shift_right.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/size_t_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/sizeof.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/stable_partition.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/transform.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/transform_view.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/unique.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/upper_bound.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/value_type.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/value_type_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/vector |only bigmemory-3.8/bigmemory/include/boost/mpl/vector.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/void.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/void_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/noncopyable.hpp |only bigmemory-3.8/bigmemory/include/boost/numeric |only bigmemory-3.8/bigmemory/include/boost/random |only bigmemory-3.8/bigmemory/include/boost/shared_ptr.hpp |only bigmemory-3.8/bigmemory/include/boost/static_assert.hpp |only bigmemory-3.8/bigmemory/include/boost/throw_exception.hpp |only bigmemory-3.8/bigmemory/include/boost/type_traits |only bigmemory-3.8/bigmemory/include/boost/uuid |only bigmemory-3.8/bigmemory/include/boost/uuid.hpp |only bigmemory-3.8/bigmemory/man/big.sub.matrix.Rd |only bigmemory-3.9/bigmemory/DESCRIPTION | 8 bigmemory-3.9/bigmemory/R/bigmatrix.R | 574 ++++- bigmemory-3.9/bigmemory/R/bigmatrixLib.R | 40 bigmemory-3.9/bigmemory/R/bigmatrixShm.R | 73 bigmemory-3.9/bigmemory/R/utils.R | 4 bigmemory-3.9/bigmemory/configure.Rout | 6 bigmemory-3.9/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/list.hpp | 285 -- bigmemory-3.9/bigmemory/man/attach.big.matrix.Rd | 4 bigmemory-3.9/bigmemory/man/big.matrix-class.Rd | 15 bigmemory-3.9/bigmemory/man/big.matrix.Rd | 9 bigmemory-3.9/bigmemory/man/bigmemory-package.Rd | 15 bigmemory-3.9/bigmemory/man/deepcopy.Rd | 13 bigmemory-3.9/bigmemory/man/mwhich.Rd | 5 bigmemory-3.9/bigmemory/src/BigMatrix.cpp | 60 bigmemory-3.9/bigmemory/src/BigMatrix.h | 30 bigmemory-3.9/bigmemory/src/BigMatrixAccessor.hpp | 14 bigmemory-3.9/bigmemory/src/BigMemoryDefines.h | 2 bigmemory-3.9/bigmemory/src/BigMemoryMutex.cpp | 23 bigmemory-3.9/bigmemory/src/BigMemoryMutex.h | 23 bigmemory-3.9/bigmemory/src/CUserMutex.cpp | 2 bigmemory-3.9/bigmemory/src/Cbigmemory.cpp | 1003 +++++++--- bigmemory-3.9/bigmemory/src/CbigmemoryLib.cpp | 31 bigmemory-3.9/bigmemory/src/SharedCounter.cpp | 23 bigmemory-3.9/bigmemory/src/SharedCounter.h | 23 bigmemory-3.9/bigmemory/src/bigmemoryutils.cpp | 23 bigmemory-3.9/bigmemory/src/isna.hpp | 23 bigmemory-3.9/bigmemory/src/util.cpp | 2 bigmemory-3.9/bigmemory/src/util.h | 2 312 files changed, 1569 insertions(+), 766 deletions(-)
Author: Jae. H. Kim
Title: Bootstrap Prediction Intervals and Bias-Corrected Forecasting
Description: Bias-Corrected Forecasting and Bootstrap Prediction
Intervals for Autoregressive Time Series
Diff between BootPR versions 0.57 dated 2009-05-04 and 0.58 dated 2009-06-24
DESCRIPTION | 10 +++++----- man/BootAfterBootPI.Rd | 5 ++++- man/BootBC.Rd | 5 ++++- man/BootPR-package.Rd | 6 +++--- man/ShamanStine.PI.Rd | 5 ++++- man/Stine.Shaman.Rd | 6 +++++- 6 files changed, 25 insertions(+), 12 deletions(-)
Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong,
Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel,
Gangolf Jobb, Christoph Heibl, Daniel Lawson, Vincent Lefort,
Pierre Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander,
Rainer Opgen-Rhein, Korbinian Strimmer, Damien de Vienne
Title: Analyses of Phylogenetics and Evolution
Description: ape provides functions for reading, writing, plotting, and
manipulating phylogenetic trees, analyses of comparative data
in a phylogenetic framework, analyses of diversification and
macroevolution, computing distances from allelic and nucleotide
data, reading nucleotide sequences, and several tools such as
Mantel's test, computation of minimum spanning tree, the
population parameter theta based on various approaches,
nucleotide diversity, generalized skyline plots, estimation of
absolute evolutionary rates and clock-like trees using mean
path lengths, non-parametric rate smoothing and penalized
likelihood. Phylogeny estimation can be done with the NJ,
BIONJ, and ME methods.
Diff between ape versions 2.3 dated 2009-03-30 and 2.3-1 dated 2009-06-24
ape-2.3-1/ape/ChangeLog | 54 ++++++++++++++++ ape-2.3-1/ape/DESCRIPTION | 13 +--- ape-2.3-1/ape/R/CDAM.global.R | 2 ape-2.3-1/ape/R/DNA.R | 15 +++- ape-2.3-1/ape/R/ace.R | 31 ++++----- ape-2.3-1/ape/R/balance.R | 6 - ape-2.3-1/ape/R/birthdeath.R | 8 +- ape-2.3-1/ape/R/branching.times.R | 6 - ape-2.3-1/ape/R/cherry.R | 22 +++--- ape-2.3-1/ape/R/compar.ou.R | 6 - ape-2.3-1/ape/R/dist.gene.R | 6 - ape-2.3-1/ape/R/dist.topo.R | 8 +- ape-2.3-1/ape/R/drop.tip.R | 103 +++++++++++++++++++------------- ape-2.3-1/ape/R/gammaStat.R | 6 - ape-2.3-1/ape/R/is.binary.tree.R | 4 - ape-2.3-1/ape/R/is.monophyletic.R |only ape-2.3-1/ape/R/is.ultrametric.R | 4 - ape-2.3-1/ape/R/klastorin.R | 59 ------------------ ape-2.3-1/ape/R/ltt.plot.R | 8 +- ape-2.3-1/ape/R/mrca.R | 6 - ape-2.3-1/ape/R/pic.R | 6 - ape-2.3-1/ape/R/read.nexus.R | 5 - ape-2.3-1/ape/R/read.tree.R | 4 - ape-2.3-1/ape/R/root.R | 10 +-- ape-2.3-1/ape/R/rotate.R | 2 ape-2.3-1/ape/R/rtree.R | 17 ++--- ape-2.3-1/ape/R/summary.phylo.R | 19 +++-- ape-2.3-1/ape/R/vcv.phylo.R | 6 - ape-2.3-1/ape/R/which.edge.R | 6 - ape-2.3-1/ape/R/write.dna.R | 6 - ape-2.3-1/ape/R/write.tree.R | 13 ++-- ape-2.3-1/ape/R/yule.R | 23 +++++-- ape-2.3-1/ape/R/zoom.R | 13 +--- ape-2.3-1/ape/Thanks | 2 ape-2.3-1/ape/inst/doc/MoranI.pdf |binary ape-2.3-1/ape/man/DNAbin.Rd | 5 + ape-2.3-1/ape/man/Initialize.corPhyl.Rd | 2 ape-2.3-1/ape/man/ape-internal.Rd | 9 -- ape-2.3-1/ape/man/ape-package.Rd | 9 +- ape-2.3-1/ape/man/consensus.Rd | 6 - ape-2.3-1/ape/man/dist.dna.Rd | 4 - ape-2.3-1/ape/man/drop.tip.Rd | 12 ++- ape-2.3-1/ape/man/is.monophyletic.Rd |only ape-2.3-1/ape/man/makeNodeLabel.Rd | 2 ape-2.3-1/ape/man/opsin.Rd | 3 ape-2.3-1/ape/man/yule.cov.Rd | 20 +++--- ape-2.3/ape/man/klastorin.Rd |only ape-2.3/ape/src/treefunc.c |only 48 files changed, 305 insertions(+), 266 deletions(-)
Author: Jonathan P. Weeks
Diff between plink versions 1.1-3 dated 2009-06-14 and 1.1-4 dated 2009-06-19
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a common
item design. The unidimensional methods include the Mean/Mean,
Mean/Sigma, Haebara, and Stocking-Lord methods for dichotomous
(1PL, 2PL and 3PL) and/or polytomous (graded response, partial
credit/generalized partial credit, nominal, and multiple-choice
model) items. The multidimensional methods include the
Reckase-Martineau method and extensions of the Haebara and
Stocking-Lord method using a single dilation parameter,
multiple dilation parameters, or the Oshima, Davey, & Lee
approach for multidimensional extensions of all the
unidimensional dichotomous and polytomous item response models.
The package also includes functions for importing item and/or
ability parameters from common IRT software and ploting item
characteristic/category curves or surfaces and vector plots.
DESCRIPTION | 37 ++--
R/drm.R | 4
R/gpcm.R | 6
R/grm.R | 6
R/mcm.R | 2
R/mixed.R | 2
R/nrm.R | 2
R/plink.R | 130 ++++++++++-----
R/plot.R | 442 ++++++++++++++++++++++++++++++---------------------
R/read.bilog.R | 20 +-
inst/CITATION | 4
inst/NEWS | 28 +++
man/drm-methods.Rd | 12 -
man/gpcm-methods.Rd | 12 -
man/grm-methods.Rd | 8
man/mixed-methods.Rd | 9 +
man/plink-methods.Rd | 45 +++--
man/plot.irt.prob.Rd | 3
man/read.bilog.Rd | 20 +-
19 files changed, 496 insertions(+), 296 deletions(-)
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.2 dated 2009-04-29 and 3.2.1 dated 2009-06-19
CHANGELOG | 3 ++- DESCRIPTION | 11 ++++++----- R/mclust.R | 15 +++++++++++---- 3 files changed, 19 insertions(+), 10 deletions(-)
Author: Grace Chiu
Diff between bentcableAR versions 0.2 dated 2009-06-18 and 0.2.1 dated 2009-06-19
Title: Bent-Cable Regression for Independent Data or Autoregressive
Time Series
Description: This package contains two main interfaces for fitting and
diagnosing bent-cable regressions for autoregressive
time-series data or independent data (time series or
otherwise). The interfaces are 'bentcable.ar()' and
'bentcable.dev.plot()'. Some components in the package can also
be used as stand-alone functions. The bent cable
(linear-quadratic-linear) generalizes the broken stick
(linear-linear), which is also handled by this package. Version
0.2 corrects a glitch in the computation of confidence
intervals for the CTP.
DESCRIPTION | 8 ++++----
man/bentcableAR.Rd | 4 ++--
2 files changed, 6 insertions(+), 6 deletions(-)
Author: Ollivier TARAMASCO
Title: Hidden Markov Models simulations and estimations
Description: Discrete, univariate or multivariate gaussian, mixture of
univariate or multivariate gaussian HMM functions for
simulation and estimation.
Diff between RHmm versions 1.3.0 dated 2009-04-27 and 1.3.1 dated 2009-06-19
DESCRIPTION | 10 ++++++---- R/RHmm-HyperNew.R | 4 ++-- R/RHmm-internals.R | 4 ++-- R/RHmm.R | 4 ++-- README | 14 +++++++++++--- src/AllDistributions.h | 2 +- src/Debogage.h | 2 +- src/Hmm.h | 4 ++-- src/Kmeans.cpp | 2 +- src/Kmeans.h | 6 +++--- src/Main.cpp |only src/MultivariateNormalUtil.cpp | 2 +- src/MultivariateNormalUtil.h | 2 +- src/OTMathUtil.h | 2 +- src/REquivalents.h | 2 +- src/RHmm.cpp | 2 +- src/RHmm.h | 2 +- src/SamplesUtil.cpp | 2 +- src/SamplesUtil.h | 2 +- src/cBaumWelch.cpp | 2 +- src/cBaumWelch.h | 2 +- src/cBaumWelchInParam.cpp | 2 +- src/cBaumWelchInParam.h | 2 +- src/cDiscrete.cpp | 2 +- src/cDiscrete.h | 2 +- src/cDistribution.h | 2 +- src/cHmm.cpp | 2 +- src/cHmm.h | 2 +- src/cHmmFit.cpp | 2 +- src/cHmmFit.h | 2 +- src/cInParam.cpp | 2 +- src/cInParam.h | 2 +- src/cLogBaumWelch.cpp | 2 +- src/cLogBaumWelch.h | 2 +- src/cMixtMultivariateNormal.cpp | 2 +- src/cMixtMultivariateNormal.h | 2 +- src/cMixtUnivariateNormal.cpp | 2 +- src/cMixtUnivariateNormal.h | 2 +- src/cMultivariateNormal.cpp | 2 +- src/cMultivariateNormal.h | 2 +- src/cOTError.cpp | 2 +- src/cOTError.h | 2 +- src/cOTMatrix.cpp | 2 +- src/cOTMatrix.h | 2 +- src/cOTVector.cpp | 2 +- src/cOTVector.h | 2 +- src/cRUtils.cpp | 2 +- src/cRUtils.h | 2 +- src/cRandomGenerator.h | 2 +- src/cUnivariateNormal.cpp | 2 +- src/cUnivariateNormal.h | 2 +- src/cViterbi.cpp | 2 +- src/cViterbi.h | 2 +- src/logprob.cpp | 2 +- src/logprob.h | 2 +- 55 files changed, 75 insertions(+), 65 deletions(-)
Author: Pedro Brasil
Diff between DiagnosisMed versions 0.2.2 dated 2009-06-07 and 0.2.2.1 dated 2009-06-19
Title: Diagnostic test accuracy evaluation for medical professionals.
Description: DiagnosisMed is a package to analyze data from diagnostic
test accuracy evaluating health conditions. It is being built
to be used by health professionals. This package is - or soon
will be - able to estimate sample size for common situations in
diagnostic test accuracy, estimate sensitivity and specificity
from categorical and continuous test results including some
evaluations of indeterminate results, or compare different
analysis strategies into measures commonly used by health
professionals.
DESCRIPTION | 12 +-
R/ROC.r | 135 +++++++++++++-------------------
R/TGROC.r | 213 ++++++++++++----------------------------------------
R/diagnosis.r | 16 ++-
R/diagnosisI.r | 16 ++-
R/plot.ROC.r | 2
R/plot.TGROC.r |only
R/print.ROC.r | 2
man/LRgrgaph.Rd | 7 +
man/ROC.Rd | 8 +
man/TGROC.Rd | 14 ++-
man/diagnosis.Rd | 2
man/interact.ROC.Rd | 1
man/plot.diag.Rd | 1
14 files changed, 169 insertions(+), 260 deletions(-)
Author: Friedrich Leisch
Title: Flexible Cluster Algorithms
Description: The main function kcca implements a general framework for
k-centroids cluster analysis supporting arbitrary distance
measures and centroid computation. Further cluster methods
include hard competitive learning, neural gas, and QT
clustering. There are numerous visualization methods for
cluster results (neighborhood graphs, convex cluster hulls,
barcharts of centroids, ...), and bootstrap methods for the
analysis of cluster stability.
Diff between flexclust versions 1.1-2 dated 2009-02-22 and 1.2-0 dated 2009-06-19
flexclust-1.1-2/flexclust/inst/NEWS |only flexclust-1.2-0/flexclust/DESCRIPTION | 23 ++- flexclust-1.2-0/flexclust/NAMESPACE | 15 +- flexclust-1.2-0/flexclust/NEWS | 15 ++ flexclust-1.2-0/flexclust/R/AAA-classes.R | 12 + flexclust-1.2-0/flexclust/R/barplot.R | 143 ++++++++++++++++++----- flexclust-1.2-0/flexclust/R/bootstrap.R | 5 flexclust-1.2-0/flexclust/R/bundestag.R | 15 +- flexclust-1.2-0/flexclust/R/kcca.R | 35 +++-- flexclust-1.2-0/flexclust/R/shadow.R |only flexclust-1.2-0/flexclust/R/stripes.R |only flexclust-1.2-0/flexclust/R/utils.R | 17 ++ flexclust-1.2-0/flexclust/inst/CITATION | 53 ++------ flexclust-1.2-0/flexclust/man/barplot-methods.Rd | 39 +++++- flexclust-1.2-0/flexclust/man/bundestag.Rd | 10 + flexclust-1.2-0/flexclust/man/kcca.Rd | 15 ++ flexclust-1.2-0/flexclust/man/predict-methods.Rd | 3 flexclust-1.2-0/flexclust/man/propBarchart.Rd |only flexclust-1.2-0/flexclust/man/shadow.Rd |only flexclust-1.2-0/flexclust/man/shadowStars.Rd |only flexclust-1.2-0/flexclust/man/stepFlexclust.Rd | 14 +- flexclust-1.2-0/flexclust/man/stripes.Rd |only 22 files changed, 303 insertions(+), 111 deletions(-)
Author: Peter K Dunn
Diff between tweedie versions 1.6.2 dated 2009-02-16 and 1.6.6 dated 2009-06-19
Title: Tweedie exponential family models
Description: Maximum likelihood computations for Tweedie families.
CHANGE.log | 14 +++++
DESCRIPTION | 12 ++---
R/tweedie.R | 115 ++++++++++++++++++++++++++++++++-----------------
man/tweedie-package.Rd | 12 ++---
man/tweedie.profile.Rd | 20 +++++++-
5 files changed, 122 insertions(+), 51 deletions(-)
Author: Arne Henningsen and Jeff D. Hamann
Title: Estimating Systems of Simultaneous Equations
Description: This package contains functions for fitting simultaneous
systems of linear and nonlinear equations using Ordinary Least
Squares (OLS), Weighted Least Squares (WLS), Seemingly
Unrelated Regressions (SUR), Two-Stage Least Squares (2SLS),
Weighted Two-Stage Least Squares (W2SLS), and Three-Stage Least
Squares (3SLS).
Diff between systemfit versions 1.1-0 dated 2009-06-18 and 1.1-2 dated 2009-06-19
systemfit-1.1-0/systemfit/tests |only systemfit-1.1-2/systemfit/DESCRIPTION | 8 systemfit-1.1-2/systemfit/NEWS | 7 systemfit-1.1-2/systemfit/inst/doc/systemfit.pdf | 573 +++++++++++------------ systemfit-1.1-2/systemfit/man/systemfit.Rd | 31 + 5 files changed, 328 insertions(+), 291 deletions(-)
Author: Stefano Maria Iacus
Title: Simulation and Inference for Stochastic Differential Equations
Description: Companion package to the book Simulation and Inference for
Stochastic Differential Equations With R Examples, ISBN
978-0-387-75838-1, Springer, NY.
Diff between sde versions 2.0.5 dated 2009-04-15 and 2.0.6 dated 2009-06-19
DESCRIPTION | 12 ++++++------ R/zzz.R | 4 ++-- 2 files changed, 8 insertions(+), 8 deletions(-)
Author: Petr Savicky
Diff between pspearman versions 0.1-10 dated 2009-03-04 and 0.2-5 dated 2009-06-19
Title: Spearman's rank correlation test
Description: Spearman's rank correlation test with precomputed exact
null distribution for n <= 22.
pspearman-0.1-10/pspearman/man/pspearman-package.Rd |only
pspearman-0.2-5/pspearman/CHANGELOG | 4
pspearman-0.2-5/pspearman/DESCRIPTION | 11 -
pspearman-0.2-5/pspearman/NAMESPACE |only
pspearman-0.2-5/pspearman/R/init.R | 6
pspearman-0.2-5/pspearman/R/spearman.data.R |only
pspearman-0.2-5/pspearman/R/spearman.test.R | 186 +++++++++++---------
pspearman-0.2-5/pspearman/man/pspearman.Rd |only
pspearman-0.2-5/pspearman/man/spearman.test.Rd | 68 +++----
9 files changed, 146 insertions(+), 129 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.08-01 dated 2009-06-17 and 0.08-02 dated 2009-06-19
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 3 +++
DESCRIPTION | 8 ++++----
R/AllInternal.R | 2 +-
R/mi.R | 4 +---
R/mi.binary.R | 10 ++++------
R/mi.continuous.R | 14 ++++++--------
R/mi.count.R | 11 +++++------
R/mi.info.R | 4 ++--
R/plot.R | 10 ++++++----
R/resid.R | 4 ++--
10 files changed, 34 insertions(+), 36 deletions(-)
Author: Dimitris Rizopoulos
Diff between ltm versions 0.9-0 dated 2009-03-02 and 0.9-1 dated 2009-06-19
Title: Latent Trait Models under IRT
Description: Analysis of multivariate dichotomous and polytomous data
using latent trait models under the Item Response Theory
approach. It includes the Rasch, the Two-Parameter Logistic,
the Birnbaum's Three-Parameter, the Graded Response, and the
Generalized Partial Credit Models.
DESCRIPTION | 32 +++++++++++++++++++-------------
R/EM.R | 2 +-
R/GHpoints.R | 2 +-
R/GoF.gpcm.R | 2 +-
R/GoF.rasch.R | 2 +-
R/IRT.parm.R | 2 +-
R/IRT.parm.grm.R | 2 +-
R/IRT.parm.ltm.R | 2 +-
R/IRT.parm.rasch.R | 2 +-
R/IRT.parm.tpm.R | 2 +-
R/anova.gpcm.R | 2 +-
R/anova.grm.R | 2 +-
R/anova.ltm.R | 2 +-
R/anova.rasch.R | 2 +-
R/anova.tpm.R | 2 +-
R/betas.gpcm.R | 2 +-
R/betas.grm.R | 2 +-
R/betas.ltm.R | 2 +-
R/betas.rasch.R | 2 +-
R/biserial.cor.R | 2 +-
R/cd.tpm.R | 2 +-
R/cd.vec.R | 2 +-
R/chisq.irt.R | 2 +-
R/coef.gpcm.R | 4 ++--
R/coef.grm.R | 4 ++--
R/coef.ltm.R | 4 ++--
R/coef.rasch.R | 4 ++--
R/coef.tpm.R | 4 ++--
R/cprobs.R | 2 +-
R/crf.GPCM.R | 2 +-
R/crf.GPCM2.R | 2 +-
R/cronbach.alpha.R | 2 +-
R/cumprobs.R | 2 +-
R/descript.R | 2 +-
R/factor.scores.R | 2 +-
R/factor.scores.gpcm.R | 2 +-
R/factor.scores.grm.R | 2 +-
R/factor.scores.ltm.R | 2 +-
R/factor.scores.rasch.R | 2 +-
R/factor.scores.tpm.R | 2 +-
R/fd.vec.R | 2 +-
R/fitted.gpcm.R | 4 ++--
R/fitted.grm.R | 2 +-
R/fitted.ltm.R | 2 +-
R/fitted.rasch.R | 2 +-
R/fitted.tpm.R | 2 +-
R/fscores.g.R | 2 +-
R/fscores.gp.R | 2 +-
R/fscores.l.R | 2 +-
R/fscores.r.R | 2 +-
R/fscores.t.R | 2 +-
R/gauher.R | 2 +-
R/gpcm.R | 2 +-
R/grm.R | 2 +-
R/infoGPCM.R | 2 +-
R/infoprobs.R | 2 +-
R/information.R | 2 +-
R/iprobs.R | 2 +-
R/item.fit.R | 2 +-
R/jacobian.R | 2 +-
R/linpred.GPCM.R | 2 +-
R/logLik.gpcm.R | 2 +-
R/logLik.grm.R | 2 +-
R/logLik.ltm.R | 2 +-
R/logLik.rasch.R | 2 +-
R/logLik.tpm.R | 2 +-
R/logLiktpm.R | 2 +-
R/loglikgpcm.R | 2 +-
R/loglikgrm.R | 2 +-
R/loglikltm.R | 2 +-
R/ltm.R | 2 +-
R/ltm.fit.R | 2 +-
R/margins.R | 2 +-
R/margins.gpcm.R | 2 +-
R/margins.grm.R | 2 +-
R/margins.ltm.R | 2 +-
R/margins.rasch.R | 2 +-
R/margins.tpm.R | 2 +-
R/matArrays.R | 2 +-
R/matMeans.R | 2 +-
R/matSums.R | 2 +-
R/matches.R | 2 +-
R/mult.choice.R | 2 +-
R/observedFreqs.R | 2 +-
R/onAttach.R | 2 +-
R/person.fit.R | 2 +-
R/plot.aov.gpcm.R | 2 +-
R/plot.descript.R | 3 +--
R/plot.fscores.R | 2 +-
R/plot.gpcm.R | 2 +-
R/plot.grm.R | 2 +-
R/plot.ltm.R | 2 +-
R/plot.rasch.R | 2 +-
R/plot.tpm.R | 2 +-
R/plot.unidimTest.R | 2 +-
R/print.GoF.gpcm.R | 2 +-
R/print.GoF.rasch.R | 2 +-
R/print.aov.gpcm.R | 2 +-
R/print.aov.grm.R | 2 +-
R/print.aov.ltm.R | 2 +-
R/print.aov.rasch.R | 2 +-
R/print.aov.tpm.R | 2 +-
R/print.cronbachAlpha.R | 2 +-
R/print.descript.R | 2 +-
R/print.fscores.R | 2 +-
R/print.gpcm.R | 2 +-
R/print.grm.R | 2 +-
R/print.information.R | 2 +-
R/print.itemFit.R | 8 ++++----
R/print.ltm.R | 2 +-
R/print.margins.gpcm.R | 2 +-
R/print.margins.grm.R | 2 +-
R/print.margins.ltm.R | 2 +-
R/print.persFit.R | 6 +++---
R/print.rasch.R | 2 +-
R/print.rcor.test.R | 9 ++++-----
R/print.summ.gpcm.R | 2 +-
R/print.summ.grm.R | 2 +-
R/print.summ.ltm.R | 2 +-
R/print.summ.rasch.R | 2 +-
R/print.summ.tpm.R | 2 +-
R/print.tpm.R | 2 +-
R/print.unidimTest.R | 2 +-
R/probs.R | 2 +-
R/rasch.R | 2 +-
R/rcor.test.R | 2 +-
R/residuals.gpcm.R | 2 +-
R/residuals.grm.R | 2 +-
R/residuals.ltm.R | 2 +-
R/residuals.rasch.R | 2 +-
R/residuals.tpm.R | 2 +-
R/rmvlogis.R | 2 +-
R/rmvordlogis.R | 2 +-
R/scoregpcm.R | 2 +-
R/scoregpcmSNW.R | 2 +-
R/scoregrm.R | 2 +-
R/scoreltm.R | 2 +-
R/scoretpm.R | 2 +-
R/simulate.gpcm.R | 2 +-
R/simulate.grm.R | 2 +-
R/start.val.gpcm.R | 2 +-
R/start.val.grm.R | 2 +-
R/start.val.ltm.R | 2 +-
R/start.val.rasch.R | 2 +-
R/start.val.tpm.R | 2 +-
R/summary.gpcm.R | 2 +-
R/summary.grm.R | 2 +-
R/summary.ltm.R | 2 +-
R/summary.rasch.R | 2 +-
R/summary.tpm.R | 2 +-
R/testEquatingData.R | 2 +-
R/thetas.tpm.R | 2 +-
R/tpm.R | 2 +-
R/unidimTest.R | 2 +-
R/vcov.gpcm.R | 2 +-
R/vcov.grm.R | 2 +-
R/vcov.ltm.R | 2 +-
R/vcov.rasch.R | 2 +-
R/vcov.tpm.R | 2 +-
data/Abortion.rda |binary
data/Environment.rda |binary
data/LSAT.rda |binary
data/Mobility.rda |binary
data/Science.rda |binary
data/WIRS.rda |binary
inst/NEWS | 11 +++++++++++
man/ltm-package.Rd | 4 ++--
167 files changed, 204 insertions(+), 189 deletions(-)
Author: Bob Wheeler
Diff between SuppDists versions 1.1-2 dated 2008-03-05 and 1.1-4 dated 2009-06-18
Title: Supplementary distributions
Description: Ten distributions supplementing those built into R.
Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi
squared, Spearman's rho, maximum F ratio, the Pearson product
moment correlation coefficiant, Johnson distributions, normal
scores and generalized hypergeometric distributions. In
addition two random number generators of George Marsaglia are
included.
DESCRIPTION | 32 ++++++++++++++++++--------------
man/Friedman.Rd | 2 +-
man/Johnson.Rd | 2 +-
man/Kendall.Rd | 2 +-
man/KruskalWallis.Rd | 2 +-
man/MWC1019.Rd | 6 ++++--
man/NormalScore.Rd | 2 +-
man/Pearson.Rd | 2 +-
man/Spearman.Rd | 2 +-
man/ghyper.Rd | 4 ++--
man/ghyperTypes.Rd | 2 +-
man/invGauss.Rd | 2 +-
man/maxFratio.Rd | 2 +-
man/ziggurat.Rd | 4 +++-
14 files changed, 37 insertions(+), 29 deletions(-)
Author: Marcello D'Orazio
Title: Statistical Matching
Description: This package provides some R functions to perform
statistical matching between two data sources. These functions
can also be used to impute missing values in data sets through
hot-deck methods.
Diff between StatMatch versions 0.6 dated 2009-02-01 and 0.7 dated 2009-06-18
DESCRIPTION | 31 ++++++++++++++++++------------- R/fact2dummy.R | 2 +- R/mixed.mtc.R | 2 +- 3 files changed, 20 insertions(+), 15 deletions(-)
Author: Bob Wheeler
Diff between AlgDesign versions 1.0-9 dated 2008-03-05 and 1.0-10 dated 2009-06-18
Title: AlgDesign
Description: Algorithmic experimental designs. Calculates exact and
approximate theory experimental designs for D,A, and I
criteria. Very large designs may be created. Experimental
designs may be blocked or blocked designs created from a
candidate list, using several criteria. The blocking can be
done when whole and within plot factors interact.
DESCRIPTION | 32 +++++++++++++++++---------------
R/Utility.R | 5 +++++
man/CCTable11.1a.Rd | 2 +-
man/EffRound.Rd | 2 +-
man/EvalBlock.Rd | 2 +-
man/EvalDesign.Rd | 2 +-
man/ExpFormula.Rd | 2 +-
man/Federov.Rd | 2 +-
man/ModelMatrix.Rd | 2 +-
man/ModelMatrixTerms.Rd |only
man/MonteOpt.Rd | 2 +-
man/TGTable3.Rd | 2 +-
man/TGTable5.Rd | 2 +-
man/blockOpt.Rd | 10 +++++-----
man/genFact.Rd | 2 +-
man/genMixture.Rd | 2 +-
16 files changed, 39 insertions(+), 32 deletions(-)
Author: Roger Bivand and Danlin Yu
Title: Geographically weighted regression
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Diff between spgwr versions 0.5-10 dated 2009-06-05 and 0.5-12 dated 2009-06-18
ChangeLog | 14 ++++++++++ DESCRIPTION | 8 +++--- R/gwr.R | 45 +++++++++++++++++++++------------- R/gwr.cv.R | 11 ++++---- R/gwr.whole.test.R | 66 ++++++++++++++++++++++++++++++++++++-------------- R/gwr1.cv.R | 6 ++-- inst/ChangeLog | 14 ++++++++++ man/LMZ.F3GWR.test.Rd | 11 ++++++-- man/ggwr.sel.Rd | 4 ++- man/gwr.cv.Rd | 4 ++- 10 files changed, 133 insertions(+), 50 deletions(-)
Author: Roland Fried
Diff between robfilter versions 2.4 dated 2008-12-13 and 2.5 dated 2009-06-18
Title: Robust Time Series Filters
Description: A set of functions to filter time series based on concepts
from robust statistics.
DESCRIPTION | 30 +++++++++++++++++-------------
R/madore.filter.R | 34 +++++++++++++++++-----------------
man/madore.filter.Rd | 48 ++++++++++++++++++++++++++++++------------------
3 files changed, 64 insertions(+), 48 deletions(-)
Author: Jim Lemon
Diff between prettyR versions 1.4 dated 2009-01-20 and 1.5 dated 2009-06-18
Title: Pretty descriptive stats.
Description: Functions for conventionally formatted descriptive stats,
and to format R output as HTML.
DESCRIPTION | 16 +++++++++-------
R/delim.table.R | 19 +++++++++++++------
R/htmlize.R | 4 ++++
man/delim.table.Rd | 20 +++++++++++++++-----
4 files changed, 41 insertions(+), 18 deletions(-)
Author: Arne Henningsen and Jeff D. Hamann
Title: Estimating Systems of Simultaneous Equations
Description: This package contains functions for fitting simultaneous
systems of linear and nonlinear equations using Ordinary Least
Squares (OLS), Weighted Least Squares (WLS), Seemingly
Unrelated Regressions (SUR), Two-Stage Least Squares (2SLS),
Weighted Two-Stage Least Squares (W2SLS), and Three-Stage Least
Squares (3SLS).
Diff between systemfit versions 1.0-8 dated 2009-01-26 and 1.1-0 dated 2009-06-18
DESCRIPTION | 19 NAMESPACE |only NEWS |only R/calcGLS.R | 40 + R/calcResidCov.R | 51 + R/fiml.R | 7 R/ftest.R | 18 R/predict.systemfit.R | 8 R/prepareData.R | 1 R/smallMethods.R | 21 R/summary.systemfit.R | 35 - R/systemfit.R | 250 +++++--- inst/doc/systemfit.pdf | 1234 +++++++++++++++++++++---------------------- man/fitted.systemfit.Rd | 6 man/residuals.systemfit.Rd | 6 man/systemfit.Rd | 8 tests/KleinI.R |only tests/KleinI.Rout.save |only tests/KleinI_noMat.R |only tests/KleinI_noMat.Rout.save |only tests/test_2sls.R | 10 tests/test_2sls.Rout.save | 30 - tests/test_3sls.R | 10 tests/test_3sls.Rout.save | 25 tests/test_hausman.R | 2 tests/test_hausman.Rout.save | 12 tests/test_ols.R | 11 tests/test_ols.Rout.save | 31 - tests/test_panel.Rout.save | 585 ++++++++++---------- tests/test_sur.R | 11 tests/test_sur.Rout.save | 26 tests/test_w2sls.R | 10 tests/test_w2sls.Rout.save | 30 - tests/test_wls.R | 11 tests/test_wls.Rout.save | 31 - 35 files changed, 1315 insertions(+), 1224 deletions(-)
Author: Thomas Hoffmann
Diff between pbatR versions 2.1.4 dated 2009-03-10 and 2.1.5 dated 2009-06-18
Title: P2BAT
Description: This package provides data analysis via the pbat program,
and an alternative internal implementation of the power
calculations via simulation only. For analysis, this package
provides a frontend to the PBAT software, automatically reading
in the output from the pbat program and displaying the
corresponding figure when appropriate (i.e. PBAT-logrank). It
includes support for multiple processes and clusters. For
analysis, users must download PBAT (developed by Christoph
Lange) and accept it's license, available on the PBAT webpage.
Both the data analysis and power calculations have command line
and graphical interfaces using tcltk.
DESCRIPTION | 27 +++++++++++++++++++++------
R/cped.R | 2 +-
R/pbatGUI.R | 34 ++++++++++++++++++++++++++++++----
src/wait.cpp | 2 +-
4 files changed, 53 insertions(+), 12 deletions(-)
Author: Henrik Bengtsson
Diff between matrixStats versions 0.1.5 dated 2009-06-14 and 0.1.6 dated 2009-06-18
Title: Methods that apply to rows and columns of a matrix
Description: This packages provides methods operating on rows and
columns of matrices. The methods are optimized for speed and
memory. This package is currently in a beta phase. Make sure
to read the 'Roadmap' section in the package help.
DESCRIPTION | 8 ++++----
R/999.package.R | 3 +--
R/rowWeightedMedians.matrix.R | 9 ++++++++-
inst/NEWS | 7 +++++++
man/matrixStats-package.Rd | 2 +-
man/rowWeightedMedians.matrix.Rd | 4 +++-
6 files changed, 24 insertions(+), 9 deletions(-)
Author: Tim Coelli, Arne Henningsen
Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier
Production and Cost Functions. Two specifications are
available: the error components specification with time-varying
efficiencies (Battese and Coelli, 1992) and a model
specification in which the firm effects are directly influenced
by a number of variables (Battese and Coelli, 1995).
Diff between frontier versions 0.99-2 dated 2009-05-05 and 0.991-0 dated 2009-06-18
DESCRIPTION | 8 NEWS | 40 R/frontier.R | 114 R/frontierQuad.R | 13 R/logLik.frontier.R | 64 R/print.frontier.R | 4 R/print.summary.frontier.R | 4 man/frontier.Rd | 65 man/frontierQuad.Rd | 4 man/logLik.frontier.Rd | 36 src/dis.c |only src/front41.f | 143 tests/frontier41.Rout.save | 2 tests/frontierTest.R | 327 tests/frontierTest.Rout.save |20665 ++++++++++++++++++++++++++++++------------- tests/nestedModels.R |only tests/nestedModels.Rout.save |only tests/translogRay.Rout.save | 331 18 files changed, 15564 insertions(+), 6256 deletions(-)
Author: Andrey Paramonov
Title: Misc Functions of the Center for the Mathematical Research
Description: A collection of useful helper routines developed by
students of the Center for the Mathematical Research, Stankin,
Moscow.
Diff between cmrutils versions 1.2 dated 2009-06-16 and 1.2-1 dated 2009-06-18
DESCRIPTION | 10 +++++----- man/cmrutils-package.Rd | 6 +++--- man/makefig.Rd | 2 ++ 3 files changed, 10 insertions(+), 8 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.17 dated 2009-06-05 and 4.18 dated 2009-06-18
caret-4.17/caret/inst/doc/caretMisc.tex |only caret-4.17/caret/inst/doc/caretSelection.tex |only caret-4.17/caret/inst/doc/caretTrain.tex |only caret-4.17/caret/inst/doc/caretVarImp.tex |only caret-4.18/caret/DESCRIPTION | 10 caret-4.18/caret/R/format.bagEarth.R | 4 caret-4.18/caret/R/makeCubistFiles.R |only caret-4.18/caret/R/nearZeroVar.R | 2 caret-4.18/caret/inst/CHANGES | 16 caret-4.18/caret/inst/doc/caretMisc.pdf | 767 +++++++++++++-------------- caret-4.18/caret/inst/doc/caretSelection.pdf | 643 +++++++++++----------- caret-4.18/caret/inst/doc/caretTrain.pdf |binary caret-4.18/caret/inst/doc/caretVarImp.pdf |binary caret-4.18/caret/man/format.bagEarth.Rd | 5 14 files changed, 730 insertions(+), 717 deletions(-)
Author: Grace Chiu
Diff between bentcableAR versions 0.1.2 dated 2008-05-16 and 0.2 dated 2009-06-18
Title: Bent-Cable Regression for Independent Data or Autoregressive
Time Series
Description: This package contains two main interfaces for fitting and
diagnosing bent-cable regressions for autoregressive
time-series data or independent data (time series or
otherwise). The interfaces are 'bentcable.ar()' and
'bentcable.dev.plot()'. Some components in the package can also
be used as stand-alone functions. The bent cable
(linear-quadratic-linear) generalizes the broken stick
(linear-linear), which is also handled by this package. Version
0.2 corrects a glitch in the computation of confidence
intervals for the CTP.
DESCRIPTION | 40 ++++++++++++++++++++--------------------
R/code.r | 9 ++++-----
man/sockeye.Rd | 10 ++++++----
man/stagnant.Rd | 6 ++++--
4 files changed, 34 insertions(+), 31 deletions(-)
Author: Markus Loecher, Sense Networks
Title: Overlays on Google map tiles in R
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling.
Diff between RgoogleMaps versions 1.1.2 dated 2009-05-20 and 1.1.3 dated 2009-06-18
DESCRIPTION | 11 ++++++----- R/GetMap.R | 16 ++++++++++++---- R/GetMap.bbox.R | 4 ++-- R/MapBackground.R | 7 ++++--- R/PlotOnStaticMap.R | 2 +- R/RGB2GRAY.R | 2 +- inst/doc/RgoogleMaps-intro.pdf |binary man/GetMap.Rd | 5 +++++ man/GetMap.bbox.Rd | 19 +++++++++++++++++++ man/MapBackground.Rd | 2 +- man/PlotOnStaticMap.Rd | 8 +++++++- man/RgoogleMaps-package.Rd | 6 ++++-- 12 files changed, 62 insertions(+), 20 deletions(-)
Author: Karline Soetaert
Diff between NetIndices versions 1.2 dated 2009-01-16 and 1.3 dated 2009-06-17
Title: Estimating network indices, including trophic structure of
foodwebs in R
Description: Given a network (e.g. a food web), estimates several
network indices. These include: Ascendency network indices,
Direct and indirect dependencies, Effective measures, Environ
network indices, General network indices, Pathway analysis,
Network uncertainty indices and constraint efficiencies and the
trophic level and omnivory indices of food webs.
NetIndices-1.2/NetIndices/inst/doc/Sweave.sty |only
NetIndices-1.2/NetIndices/inst/doc/netindices.tex |only
NetIndices-1.3/NetIndices/DESCRIPTION | 35 -
NetIndices-1.3/NetIndices/R/AscInd.R |only
NetIndices-1.3/NetIndices/R/Dependency.R |only
NetIndices-1.3/NetIndices/R/EffInd.R |only
NetIndices-1.3/NetIndices/R/EnvInd.R |only
NetIndices-1.3/NetIndices/R/GenInd.R |only
NetIndices-1.3/NetIndices/R/NetIndices.R | 739 ++--------------------
NetIndices-1.3/NetIndices/R/PathInd.R |only
NetIndices-1.3/NetIndices/R/TrophInd.R |only
NetIndices-1.3/NetIndices/R/UnInd.R |only
NetIndices-1.3/NetIndices/inst/doc/NetIndices.bib | 23
NetIndices-1.3/NetIndices/inst/doc/NetIndices.pdf |binary
NetIndices-1.3/NetIndices/inst/doc/NetIndices.rnw | 229 +++---
NetIndices-1.3/NetIndices/man/AscInd.Rd | 100 ++
NetIndices-1.3/NetIndices/man/Conesprings.Rd | 82 +-
NetIndices-1.3/NetIndices/man/Dependency.Rd | 40 -
NetIndices-1.3/NetIndices/man/EffInd.Rd | 66 +
NetIndices-1.3/NetIndices/man/EnvInd.Rd | 118 ++-
NetIndices-1.3/NetIndices/man/GenInd.Rd | 107 ++-
NetIndices-1.3/NetIndices/man/NetIndices.Rd | 31
NetIndices-1.3/NetIndices/man/PathInd.Rd | 92 ++
NetIndices-1.3/NetIndices/man/Takapoto.Rd | 77 +-
NetIndices-1.3/NetIndices/man/TrophInd.Rd | 89 +-
NetIndices-1.3/NetIndices/man/UncInd.Rd | 102 ++-
26 files changed, 899 insertions(+), 1031 deletions(-)
Author: Karline Soetaert
Diff between LIM versions 1.2 dated 2009-01-20 and 1.3 dated 2009-06-17
Title: Linear Inverse Model examples and solution methods.
Description: Functions that read and solve linear inverse problems
(food web problems, linear programming problems). These
problems find solutions to linear or quadratic functions: min
or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(ai*xi)
subject to equality constraints Ex=f and inequality constraints
Gx>=h. Uses package limSolve.
DESCRIPTION | 35
R/Flowmatrix.R |only
R/LIM.r | 564 -------
R/Ldei.R |only
R/Linp.R |only
R/Lsei.R |only
R/Plotranges.R |only
R/Variables.R |only
R/Varranges.R |only
R/Xranges.R |only
R/Xsample.R |only
R/read.limfile.r | 1661 +++++++++++------------
inst/doc/LIM.Rnw | 1515 +++++++++++----------
inst/doc/LIM.pdf | 3097 ++++++++++++++++++++++---------------------
inst/doc/vignettes.bib | 434 ------
man/FILERigaAutumn.Rd | 75 -
man/Flowmatrix.Rd | 41
man/LIM.Rd | 37
man/LIMBlending.Rd | 91 -
man/LIMBrouageMudflat.Rd | 85 -
man/LIMCaliforniaSediment.Rd | 91 -
man/LIMEcoli.Rd | 97 -
man/LIMEverglades.Rd | 77 -
man/LIMRigaAutumn.Rd | 77 -
man/LIMRigaSpring.Rd | 90 -
man/LIMRigaSummer.Rd | 86 -
man/LIMScheldtIntertidal.Rd | 99 -
man/LIMTakapoto.Rd | 75 -
man/Ldei.Rd | 108 +
man/Linp.Rd | 114 +
man/Lsei.Rd | 174 +-
man/PrintMat.Rd | 28
man/Read.Rd | 164 +-
man/Setup.Rd | 133 +
man/Variables.Rd | 40
man/Varranges.Rd | 41
man/Xranges.Rd | 41
man/Xsample.Rd | 68
man/plotranges.Rd | 103 -
39 files changed, 4749 insertions(+), 4592 deletions(-)
Author: Jari Oksanen, Roeland Kindt, Pierre Legendre, Bob O'Hara, Gavin
L. Simpson, Peter Solymos, M. Henry H. Stevens, Helene Wagner
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other functions
for community and vegetation ecologists.
Diff between vegan versions 1.15-2 dated 2009-04-15 and 1.15-3 dated 2009-06-17
DESCRIPTION | 8 R/adonis.R | 5 R/anosim.R | 4 R/anova.ccabyaxis.R | 12 R/anova.ccabymargin.R | 8 R/anova.ccabyterm.R | 16 R/capscale.R | 42 - R/eigenvals.R |only R/factorfit.R | 2 R/kendall.global.R | 3 R/mantel.R | 56 - R/mantel.partial.R | 74 - R/meandist.R |only R/mrpp.R | 2 R/ordiGetData.R | 4 R/ordilattice.getEnvfit.R | 2 R/ordisurf.R | 10 R/orditkplot.R | 4 R/ordixyplot.R | 2 R/panel.ordi.R | 4 R/plot.anosim.R | 2 R/plot.meandist.R |only R/print.anosim.R | 2 R/print.cca.R | 11 R/print.factorfit.R | 5 R/print.mantel.R | 2 R/print.mrpp.R | 2 R/print.permutest.cca.R | 2 R/print.protest.R | 2 R/print.summary.cca.R | 8 R/print.summary.meandist.R |only R/print.vectorfit.R | 5 R/protest.R | 4 R/summary.cca.R | 13 R/summary.meandist.R |only R/taxa2dist.R | 2 R/tsallis.R | 11 R/vectorfit.R | 2 R/wcmdscale.R | 7 inst/ChangeLog | 49 + inst/NEWS | 61 + inst/doc/FAQ-vegan.pdf |binary inst/doc/FAQ-vegan.texi | 32 inst/doc/decision-vegan.pdf | 1638 +++++++++++++++++++++---------------------- inst/doc/decision-vegan.tex | 16 inst/doc/diversity-vegan.pdf |binary inst/doc/diversity-vegan.tex | 69 - inst/doc/intro-vegan.pdf |binary inst/doc/intro-vegan.tex | 61 - man/anosim.Rd | 2 man/capscale.Rd | 70 + man/cca.object.Rd | 4 man/eigenvals.Rd |only man/envfit.Rd | 4 man/mantel.Rd | 4 man/metaMDS.Rd | 4 man/mrpp.Rd | 39 - man/ordisurf.Rd | 5 man/procrustes.Rd | 2 man/tsallis.Rd | 26 60 files changed, 1298 insertions(+), 1126 deletions(-)
Author: Karline Soetaert
Diff between shape versions 1.2.1 dated 2009-02-20 and 1.2.2 dated 2009-06-17
Title: Functions for plotting graphical shapes, colors
Description: Functions for plotting graphical shapes such as ellipses,
circles, cylinders, arrows, ... Support for the book "A
practical guide to ecological modelling - using R as a
simulation platform" by Karline Soetaert and Peter M.J. Herman
(2009). Springer. Includes demo(colorshapes)
shape-1.2.1/shape/man/graycol.Rd |only
shape-1.2.2/shape/DESCRIPTION | 35
shape-1.2.2/shape/R/A4.R |only
shape-1.2.2/shape/R/Arrowhead.R |only
shape-1.2.2/shape/R/Arrows.R |only
shape-1.2.2/shape/R/colorlegend.R |only
shape-1.2.2/shape/R/cylindersegment.R |only
shape-1.2.2/shape/R/drapecol.R |only
shape-1.2.2/shape/R/emptyplot.R |only
shape-1.2.2/shape/R/femmecol.R |only
shape-1.2.2/shape/R/filledcircle.R |only
shape-1.2.2/shape/R/filledcylinder.R |only
shape-1.2.2/shape/R/filledellipse.R |only
shape-1.2.2/shape/R/filledmultigonal.R |only
shape-1.2.2/shape/R/filledrectangle.R |only
shape-1.2.2/shape/R/filledshape.R |only
shape-1.2.2/shape/R/getellipse.R |only
shape-1.2.2/shape/R/greycol.R |only
shape-1.2.2/shape/R/intpalette.R |only
shape-1.2.2/shape/R/plotcircle.R |only
shape-1.2.2/shape/R/plotellipse.R |only
shape-1.2.2/shape/R/rotatexy.R |only
shape-1.2.2/shape/R/roundrect.R |only
shape-1.2.2/shape/R/shadepalette.R |only
shape-1.2.2/shape/R/shape.R | 981 --
shape-1.2.2/shape/R/writelabel.R |only
shape-1.2.2/shape/inst/doc/shape.Rnw | 55
shape-1.2.2/shape/inst/doc/shape.pdf |11444 +++++++++++++++---------------
shape-1.2.2/shape/inst/doc/vignettes.bib | 38
shape-1.2.2/shape/man/A4.Rd | 19
shape-1.2.2/shape/man/Arrowhead.Rd | 95
shape-1.2.2/shape/man/Arrows.Rd | 129
shape-1.2.2/shape/man/colorlegend.Rd | 106
shape-1.2.2/shape/man/cylindersegment.Rd | 81
shape-1.2.2/shape/man/drapecol.Rd | 50
shape-1.2.2/shape/man/emptyplot.Rd | 43
shape-1.2.2/shape/man/femmecol.Rd | 39
shape-1.2.2/shape/man/filledcircle.Rd | 83
shape-1.2.2/shape/man/filledcylinder.Rd | 97
shape-1.2.2/shape/man/filledellipse.Rd | 117
shape-1.2.2/shape/man/filledmultigonal.Rd | 99
shape-1.2.2/shape/man/filledrectangle.Rd | 100
shape-1.2.2/shape/man/filledshape.Rd | 84
shape-1.2.2/shape/man/getellipse.Rd | 64
shape-1.2.2/shape/man/greycol.Rd | 48
shape-1.2.2/shape/man/intpalette.Rd | 51
shape-1.2.2/shape/man/plotcircle.Rd | 45
shape-1.2.2/shape/man/plotellipse.Rd | 133
shape-1.2.2/shape/man/rotatexy.Rd | 43
shape-1.2.2/shape/man/roundrect.Rd | 59
shape-1.2.2/shape/man/shadepalette.Rd | 47
shape-1.2.2/shape/man/shape.Rd | 28
shape-1.2.2/shape/man/writelabel.Rd | 31
53 files changed, 7118 insertions(+), 7126 deletions(-)
Author: Torsten Hothorn, Kurt Hornik, Carolin Strobl and Achim Zeileis
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning. The
core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems,
including nominal, ordinal, numeric, censored as well as
multivariate response variables and arbitrary measurement
scales of the covariates. Based on conditional inference trees,
cforest() provides an implementation of Breiman's random
forests. The function mob() implements an algorithm for
recursive partitioning based on parametric models (e.g. linear
models, GLMs or survival regression) employing parameter
instability tests for split selection. Extensible functionality
for visualizing tree-structured regression models is available.
Diff between party versions 0.9-997 dated 2009-06-04 and 0.9-998 dated 2009-06-17
DESCRIPTION | 8 NEWS | 7 R/Classes.R | 4 R/ConditionalTree.R | 4 inst/doc/MOB.pdf | 14 inst/doc/party.pdf |binary inst/documentation/html/Classes_8c-source.html | 18 inst/documentation/html/Classes_8c.html | 102 inst/documentation/html/Classes_8c_0e317821da8f3bc0fb6da5006abb81f6_cgraph.map | 4 inst/documentation/html/Classes_8c_0e317821da8f3bc0fb6da5006abb81f6_cgraph.md5 | 2 inst/documentation/html/Classes_8c_0e317821da8f3bc0fb6da5006abb81f6_cgraph.png |binary inst/documentation/html/Classes_8c__incl.map | 30 inst/documentation/html/Classes_8c__incl.md5 | 2 inst/documentation/html/Classes_8c__incl.png |binary inst/documentation/html/Classes_8c_a160107e2d687d3fa2411af7e25763ef_cgraph.map | 2 inst/documentation/html/Classes_8c_a160107e2d687d3fa2411af7e25763ef_cgraph.md5 | 2 inst/documentation/html/Classes_8c_a160107e2d687d3fa2411af7e25763ef_cgraph.png |binary inst/documentation/html/Classes_8c_ba4726f56726372030e1e104b2f2b076_cgraph.map | 2 inst/documentation/html/Classes_8c_ba4726f56726372030e1e104b2f2b076_cgraph.md5 | 2 inst/documentation/html/Classes_8c_ba4726f56726372030e1e104b2f2b076_cgraph.png |binary inst/documentation/html/Classes_8c_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.map | 2 inst/documentation/html/Classes_8c_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.md5 | 2 inst/documentation/html/Classes_8c_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.png |binary inst/documentation/html/Classes_8h-source.html | 16 inst/documentation/html/Classes_8h.html | 102 inst/documentation/html/Classes_8h_0e317821da8f3bc0fb6da5006abb81f6_cgraph.map | 4 inst/documentation/html/Classes_8h_0e317821da8f3bc0fb6da5006abb81f6_cgraph.md5 | 2 inst/documentation/html/Classes_8h_0e317821da8f3bc0fb6da5006abb81f6_cgraph.png |binary inst/documentation/html/Classes_8h__dep__incl.map | 30 inst/documentation/html/Classes_8h__dep__incl.md5 | 2 inst/documentation/html/Classes_8h__dep__incl.png |binary inst/documentation/html/Classes_8h_a160107e2d687d3fa2411af7e25763ef_cgraph.map | 2 inst/documentation/html/Classes_8h_a160107e2d687d3fa2411af7e25763ef_cgraph.md5 | 2 inst/documentation/html/Classes_8h_a160107e2d687d3fa2411af7e25763ef_cgraph.png |binary inst/documentation/html/Classes_8h_ba4726f56726372030e1e104b2f2b076_cgraph.map | 2 inst/documentation/html/Classes_8h_ba4726f56726372030e1e104b2f2b076_cgraph.md5 | 2 inst/documentation/html/Classes_8h_ba4726f56726372030e1e104b2f2b076_cgraph.png |binary inst/documentation/html/Classes_8h_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.map | 2 inst/documentation/html/Classes_8h_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.md5 | 2 inst/documentation/html/Classes_8h_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.png |binary inst/documentation/html/Convenience_8c-source.html | 14 inst/documentation/html/Convenience_8c.html | 30 inst/documentation/html/Convenience_8c_26159cd74cebf8ff7073ff588864e9ab_cgraph.map | 14 inst/documentation/html/Convenience_8c_26159cd74cebf8ff7073ff588864e9ab_cgraph.md5 | 2 inst/documentation/html/Convenience_8c_26159cd74cebf8ff7073ff588864e9ab_cgraph.png |binary inst/documentation/html/Convenience_8c_8d5dcca68051449e29f3b857d375c4a0_cgraph.map | 8 inst/documentation/html/Convenience_8c_8d5dcca68051449e29f3b857d375c4a0_cgraph.md5 | 2 inst/documentation/html/Convenience_8c_8d5dcca68051449e29f3b857d375c4a0_cgraph.png |binary inst/documentation/html/Convenience_8c__incl.map | 30 inst/documentation/html/Convenience_8c__incl.md5 | 2 inst/documentation/html/Convenience_8c__incl.png |binary inst/documentation/html/Convenience_8c_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.map | 8 inst/documentation/html/Convenience_8c_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.md5 | 2 inst/documentation/html/Convenience_8c_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.png |binary inst/documentation/html/Convenience_8c_a1e8edb4fa73a26e73bc153c45a867b0_cgraph.map | 6 inst/documentation/html/Convenience_8c_a1e8edb4fa73a26e73bc153c45a867b0_cgraph.md5 | 2 inst/documentation/html/Convenience_8c_a1e8edb4fa73a26e73bc153c45a867b0_cgraph.png |binary inst/documentation/html/Convenience_8c_f39bdd14f23726fdd6bf74888ffbf920_cgraph.map | 8 inst/documentation/html/Convenience_8c_f39bdd14f23726fdd6bf74888ffbf920_cgraph.md5 | 2 inst/documentation/html/Convenience_8c_f39bdd14f23726fdd6bf74888ffbf920_cgraph.png |binary inst/documentation/html/Convenience_8h-source.html | 14 inst/documentation/html/Convenience_8h.html | 28 inst/documentation/html/Convenience_8h_26159cd74cebf8ff7073ff588864e9ab_cgraph.map | 14 inst/documentation/html/Convenience_8h_26159cd74cebf8ff7073ff588864e9ab_cgraph.md5 | 2 inst/documentation/html/Convenience_8h_26159cd74cebf8ff7073ff588864e9ab_cgraph.png |binary inst/documentation/html/Convenience_8h_8d5dcca68051449e29f3b857d375c4a0_cgraph.map | 8 inst/documentation/html/Convenience_8h_8d5dcca68051449e29f3b857d375c4a0_cgraph.md5 | 2 inst/documentation/html/Convenience_8h_8d5dcca68051449e29f3b857d375c4a0_cgraph.png |binary inst/documentation/html/Convenience_8h__dep__incl.map | 30 inst/documentation/html/Convenience_8h__dep__incl.md5 | 2 inst/documentation/html/Convenience_8h__dep__incl.png |binary inst/documentation/html/Convenience_8h_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.map | 8 inst/documentation/html/Convenience_8h_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.md5 | 2 inst/documentation/html/Convenience_8h_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.png |binary inst/documentation/html/Convenience_8h_f39bdd14f23726fdd6bf74888ffbf920_cgraph.map | 8 inst/documentation/html/Convenience_8h_f39bdd14f23726fdd6bf74888ffbf920_cgraph.md5 | 2 inst/documentation/html/Convenience_8h_f39bdd14f23726fdd6bf74888ffbf920_cgraph.png |binary inst/documentation/html/Distributions_8c-source.html | 14 inst/documentation/html/Distributions_8c.html | 28 inst/documentation/html/Distributions_8c_06bd58bb395eb700a056db4498c4db9c_cgraph.map | 64 inst/documentation/html/Distributions_8c_06bd58bb395eb700a056db4498c4db9c_cgraph.md5 | 2 inst/documentation/html/Distributions_8c_06bd58bb395eb700a056db4498c4db9c_cgraph.png |binary inst/documentation/html/Distributions_8c_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.map | 2 inst/documentation/html/Distributions_8c_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.md5 | 2 inst/documentation/html/Distributions_8c_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.png |binary inst/documentation/html/Distributions_8c_23e23063d2a1c5ecfb6e1603d0edc228_cgraph.map | 6 inst/documentation/html/Distributions_8c_23e23063d2a1c5ecfb6e1603d0edc228_cgraph.md5 | 2 inst/documentation/html/Distributions_8c_23e23063d2a1c5ecfb6e1603d0edc228_cgraph.png |binary inst/documentation/html/Distributions_8c_662bfb70585ca9948ff29d7ed370273b_cgraph.map | 62 inst/documentation/html/Distributions_8c_662bfb70585ca9948ff29d7ed370273b_cgraph.md5 | 2 inst/documentation/html/Distributions_8c_662bfb70585ca9948ff29d7ed370273b_cgraph.png |binary inst/documentation/html/Distributions_8c__incl.map | 30 inst/documentation/html/Distributions_8c__incl.md5 | 2 inst/documentation/html/Distributions_8c__incl.png |binary inst/documentation/html/Distributions_8c_f9d46ed74aa1e81c94ddbfdbf5cf504f_cgraph.map | 2 inst/documentation/html/Distributions_8c_f9d46ed74aa1e81c94ddbfdbf5cf504f_cgraph.md5 | 2 inst/documentation/html/Distributions_8c_f9d46ed74aa1e81c94ddbfdbf5cf504f_cgraph.png |binary inst/documentation/html/Distributions_8h-source.html | 14 inst/documentation/html/Distributions_8h.html | 22 inst/documentation/html/Distributions_8h_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.map | 2 inst/documentation/html/Distributions_8h_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.md5 | 2 inst/documentation/html/Distributions_8h_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.png |binary inst/documentation/html/Distributions_8h_579a9b99cc4ab820a62f636869788cf8_cgraph.map | 62 inst/documentation/html/Distributions_8h_579a9b99cc4ab820a62f636869788cf8_cgraph.md5 | 2 inst/documentation/html/Distributions_8h_579a9b99cc4ab820a62f636869788cf8_cgraph.png |binary inst/documentation/html/Distributions_8h__dep__incl.map | 30 inst/documentation/html/Distributions_8h__dep__incl.md5 | 2 inst/documentation/html/Distributions_8h__dep__incl.png |binary inst/documentation/html/IndependenceTest_8c-source.html | 330 - inst/documentation/html/IndependenceTest_8c.html | 55 inst/documentation/html/IndependenceTest_8c_3b7d8664edac79abe6c4f528ad2c4f35_cgraph.map |only inst/documentation/html/IndependenceTest_8c_3b7d8664edac79abe6c4f528ad2c4f35_cgraph.md5 |only inst/documentation/html/IndependenceTest_8c_3b7d8664edac79abe6c4f528ad2c4f35_cgraph.png |only inst/documentation/html/IndependenceTest_8c__incl.map | 30 inst/documentation/html/IndependenceTest_8c__incl.md5 | 2 inst/documentation/html/IndependenceTest_8c__incl.png |binary inst/documentation/html/IndependenceTest_8c_aab8e2db15687b6b95f802dd1719ed54_cgraph.map | 62 inst/documentation/html/IndependenceTest_8c_aab8e2db15687b6b95f802dd1719ed54_cgraph.md5 | 2 inst/documentation/html/IndependenceTest_8c_aab8e2db15687b6b95f802dd1719ed54_cgraph.png |binary inst/documentation/html/IndependenceTest_8c_b02275a67ad210d96fed9864590ee3ef_cgraph.map | 36 inst/documentation/html/IndependenceTest_8c_b02275a67ad210d96fed9864590ee3ef_cgraph.md5 | 2 inst/documentation/html/IndependenceTest_8c_b02275a67ad210d96fed9864590ee3ef_cgraph.png |binary inst/documentation/html/IndependenceTest_8c_d33688ffc38df769a95d6964e5bb193a_cgraph.map | 38 inst/documentation/html/IndependenceTest_8c_d33688ffc38df769a95d6964e5bb193a_cgraph.md5 | 2 inst/documentation/html/IndependenceTest_8c_d33688ffc38df769a95d6964e5bb193a_cgraph.png |binary inst/documentation/html/IndependenceTest_8c_e64c8d91a58113cee43788dc1663d645_cgraph.map | 60 inst/documentation/html/IndependenceTest_8c_e64c8d91a58113cee43788dc1663d645_cgraph.md5 | 2 inst/documentation/html/IndependenceTest_8c_e64c8d91a58113cee43788dc1663d645_cgraph.png |binary inst/documentation/html/IndependenceTest_8c_f80dcff3dd9196b9f861fd83f4efa8ac_cgraph.map | 98 inst/documentation/html/IndependenceTest_8c_f80dcff3dd9196b9f861fd83f4efa8ac_cgraph.md5 | 2 inst/documentation/html/IndependenceTest_8c_f80dcff3dd9196b9f861fd83f4efa8ac_cgraph.png |binary inst/documentation/html/IndependenceTest_8h-source.html | 18 inst/documentation/html/IndependenceTest_8h.html | 45 inst/documentation/html/IndependenceTest_8h_84abb46c73e74364113fb61590f8faa0_cgraph.map |only inst/documentation/html/IndependenceTest_8h_84abb46c73e74364113fb61590f8faa0_cgraph.md5 |only inst/documentation/html/IndependenceTest_8h_84abb46c73e74364113fb61590f8faa0_cgraph.png |only inst/documentation/html/IndependenceTest_8h__dep__incl.map | 30 inst/documentation/html/IndependenceTest_8h__dep__incl.md5 | 2 inst/documentation/html/IndependenceTest_8h__dep__incl.png |binary inst/documentation/html/IndependenceTest_8h_b02275a67ad210d96fed9864590ee3ef_cgraph.map | 36 inst/documentation/html/IndependenceTest_8h_b02275a67ad210d96fed9864590ee3ef_cgraph.md5 | 2 inst/documentation/html/IndependenceTest_8h_b02275a67ad210d96fed9864590ee3ef_cgraph.png |binary inst/documentation/html/IndependenceTest_8h_d33688ffc38df769a95d6964e5bb193a_cgraph.map | 38 inst/documentation/html/IndependenceTest_8h_d33688ffc38df769a95d6964e5bb193a_cgraph.md5 | 2 inst/documentation/html/IndependenceTest_8h_d33688ffc38df769a95d6964e5bb193a_cgraph.png |binary inst/documentation/html/LinearStatistic_8c-source.html | 14 inst/documentation/html/LinearStatistic_8c.html | 28 inst/documentation/html/LinearStatistic_8c_58fff8082d3ab197994a21a10c422353_cgraph.map | 8 inst/documentation/html/LinearStatistic_8c_58fff8082d3ab197994a21a10c422353_cgraph.md5 | 2 inst/documentation/html/LinearStatistic_8c_58fff8082d3ab197994a21a10c422353_cgraph.png |binary inst/documentation/html/LinearStatistic_8c_6216ea560644c08002fb32756ae67dcc_cgraph.map | 6 inst/documentation/html/LinearStatistic_8c_6216ea560644c08002fb32756ae67dcc_cgraph.md5 | 2 inst/documentation/html/LinearStatistic_8c_6216ea560644c08002fb32756ae67dcc_cgraph.png |binary inst/documentation/html/LinearStatistic_8c_732bfc8e1797d8953482aa31f9b43e5f_cgraph.map | 6 inst/documentation/html/LinearStatistic_8c_732bfc8e1797d8953482aa31f9b43e5f_cgraph.md5 | 2 inst/documentation/html/LinearStatistic_8c_732bfc8e1797d8953482aa31f9b43e5f_cgraph.png |binary inst/documentation/html/LinearStatistic_8c_94a0805ea258af79d426c095feee399a_cgraph.map | 2 inst/documentation/html/LinearStatistic_8c_94a0805ea258af79d426c095feee399a_cgraph.md5 | 2 inst/documentation/html/LinearStatistic_8c_94a0805ea258af79d426c095feee399a_cgraph.png |binary inst/documentation/html/LinearStatistic_8c__incl.map | 30 inst/documentation/html/LinearStatistic_8c__incl.md5 | 2 inst/documentation/html/LinearStatistic_8c__incl.png |binary inst/documentation/html/LinearStatistic_8c_be383bcae17e8b3a1d5740ec16a9817a_cgraph.map | 6 inst/documentation/html/LinearStatistic_8c_be383bcae17e8b3a1d5740ec16a9817a_cgraph.md5 | 2 inst/documentation/html/LinearStatistic_8c_be383bcae17e8b3a1d5740ec16a9817a_cgraph.png |binary inst/documentation/html/LinearStatistic_8h-source.html | 14 inst/documentation/html/LinearStatistic_8h.html | 22 inst/documentation/html/LinearStatistic_8h_6216ea560644c08002fb32756ae67dcc_cgraph.map | 6 inst/documentation/html/LinearStatistic_8h_6216ea560644c08002fb32756ae67dcc_cgraph.md5 | 2 inst/documentation/html/LinearStatistic_8h_6216ea560644c08002fb32756ae67dcc_cgraph.png |binary inst/documentation/html/LinearStatistic_8h_94a0805ea258af79d426c095feee399a_cgraph.map | 2 inst/documentation/html/LinearStatistic_8h_94a0805ea258af79d426c095feee399a_cgraph.md5 | 2 inst/documentation/html/LinearStatistic_8h_94a0805ea258af79d426c095feee399a_cgraph.png |binary inst/documentation/html/LinearStatistic_8h__dep__incl.map | 30 inst/documentation/html/LinearStatistic_8h__dep__incl.md5 | 2 inst/documentation/html/LinearStatistic_8h__dep__incl.png |binary inst/documentation/html/Node_8c-source.html | 380 - inst/documentation/html/Node_8c.html | 49 inst/documentation/html/Node_8c_1b0cb9ac9a78efda36001d9da708574d_cgraph.map |only inst/documentation/html/Node_8c_1b0cb9ac9a78efda36001d9da708574d_cgraph.md5 |only inst/documentation/html/Node_8c_1b0cb9ac9a78efda36001d9da708574d_cgraph.png |only inst/documentation/html/Node_8c_878214ca472c99cf036a426eb7cffb59_cgraph.map | 98 inst/documentation/html/Node_8c_878214ca472c99cf036a426eb7cffb59_cgraph.md5 | 2 inst/documentation/html/Node_8c_878214ca472c99cf036a426eb7cffb59_cgraph.png |binary inst/documentation/html/Node_8c__incl.map | 30 inst/documentation/html/Node_8c__incl.md5 | 2 inst/documentation/html/Node_8c__incl.png |binary inst/documentation/html/Node_8h-source.html | 18 inst/documentation/html/Node_8h.html | 41 inst/documentation/html/Node_8h_1b0cb9ac9a78efda36001d9da708574d_cgraph.map |only inst/documentation/html/Node_8h_1b0cb9ac9a78efda36001d9da708574d_cgraph.md5 |only inst/documentation/html/Node_8h_1b0cb9ac9a78efda36001d9da708574d_cgraph.png |only inst/documentation/html/Node_8h__dep__incl.map | 30 inst/documentation/html/Node_8h__dep__incl.md5 | 2 inst/documentation/html/Node_8h__dep__incl.png |binary inst/documentation/html/Predict_8c-source.html | 14 inst/documentation/html/Predict_8c.html | 44 inst/documentation/html/Predict_8c_201fdee9dc7e3e71e90ea6609ed353cb_cgraph.map | 8 inst/documentation/html/Predict_8c_201fdee9dc7e3e71e90ea6609ed353cb_cgraph.md5 | 2 inst/documentation/html/Predict_8c_201fdee9dc7e3e71e90ea6609ed353cb_cgraph.png |binary inst/documentation/html/Predict_8c_4a30a8aa916f294059b6e2cbcb9e29d5_cgraph.map | 10 inst/documentation/html/Predict_8c_4a30a8aa916f294059b6e2cbcb9e29d5_cgraph.md5 | 2 inst/documentation/html/Predict_8c_4a30a8aa916f294059b6e2cbcb9e29d5_cgraph.png |binary inst/documentation/html/Predict_8c_4f6966402677cec07284a3e1bc25660f_cgraph.map | 44 inst/documentation/html/Predict_8c_4f6966402677cec07284a3e1bc25660f_cgraph.md5 | 2 inst/documentation/html/Predict_8c_4f6966402677cec07284a3e1bc25660f_cgraph.png |binary inst/documentation/html/Predict_8c_8964e7493ed9cb96c271b168b721e329_cgraph.map | 12 inst/documentation/html/Predict_8c_8964e7493ed9cb96c271b168b721e329_cgraph.md5 | 2 inst/documentation/html/Predict_8c_8964e7493ed9cb96c271b168b721e329_cgraph.png |binary inst/documentation/html/Predict_8c_9a5170a24bc00b727527b80cec5ca60a_cgraph.map | 42 inst/documentation/html/Predict_8c_9a5170a24bc00b727527b80cec5ca60a_cgraph.md5 | 2 inst/documentation/html/Predict_8c_9a5170a24bc00b727527b80cec5ca60a_cgraph.png |binary inst/documentation/html/Predict_8c__incl.map | 30 inst/documentation/html/Predict_8c__incl.md5 | 2 inst/documentation/html/Predict_8c__incl.png |binary inst/documentation/html/Predict_8c_a508a31f1fd7cd3668ad81eb0d00dd66_cgraph.map | 14 inst/documentation/html/Predict_8c_a508a31f1fd7cd3668ad81eb0d00dd66_cgraph.md5 | 2 inst/documentation/html/Predict_8c_a508a31f1fd7cd3668ad81eb0d00dd66_cgraph.png |binary inst/documentation/html/Predict_8c_ac36eff20575604b5d7558d512601d64_cgraph.map | 40 inst/documentation/html/Predict_8c_ac36eff20575604b5d7558d512601d64_cgraph.md5 | 2 inst/documentation/html/Predict_8c_ac36eff20575604b5d7558d512601d64_cgraph.png |binary inst/documentation/html/Predict_8c_c0668d268fe5a4bad29fbf4ead39c526_cgraph.map | 40 inst/documentation/html/Predict_8c_c0668d268fe5a4bad29fbf4ead39c526_cgraph.md5 | 2 inst/documentation/html/Predict_8c_c0668d268fe5a4bad29fbf4ead39c526_cgraph.png |binary inst/documentation/html/Predict_8c_c4f4e806a78c376b13802ed2cf1e7b65_cgraph.map | 36 inst/documentation/html/Predict_8c_c4f4e806a78c376b13802ed2cf1e7b65_cgraph.md5 | 2 inst/documentation/html/Predict_8c_c4f4e806a78c376b13802ed2cf1e7b65_cgraph.png |binary inst/documentation/html/Predict_8c_cbb3e45d03e1b544c94bf639b191a953_cgraph.map | 36 inst/documentation/html/Predict_8c_cbb3e45d03e1b544c94bf639b191a953_cgraph.md5 | 2 inst/documentation/html/Predict_8c_cbb3e45d03e1b544c94bf639b191a953_cgraph.png |binary inst/documentation/html/Predict_8c_d9d49b6a210f5c09a2a1d1aa496859ce_cgraph.map | 36 inst/documentation/html/Predict_8c_d9d49b6a210f5c09a2a1d1aa496859ce_cgraph.md5 | 2 inst/documentation/html/Predict_8c_d9d49b6a210f5c09a2a1d1aa496859ce_cgraph.png |binary inst/documentation/html/Predict_8c_daf8a0eb8790ebf14f0e265de164d50e_cgraph.map | 32 inst/documentation/html/Predict_8c_daf8a0eb8790ebf14f0e265de164d50e_cgraph.md5 | 2 inst/documentation/html/Predict_8c_daf8a0eb8790ebf14f0e265de164d50e_cgraph.png |binary inst/documentation/html/Predict_8c_dcd61d38c7c43d241d09a600b70fe3c5_cgraph.map | 32 inst/documentation/html/Predict_8c_dcd61d38c7c43d241d09a600b70fe3c5_cgraph.md5 | 2 inst/documentation/html/Predict_8c_dcd61d38c7c43d241d09a600b70fe3c5_cgraph.png |binary inst/documentation/html/Predict_8c_dec31e3aa985e0af16ccaeac31237640_cgraph.map | 34 inst/documentation/html/Predict_8c_dec31e3aa985e0af16ccaeac31237640_cgraph.md5 | 2 inst/documentation/html/Predict_8c_dec31e3aa985e0af16ccaeac31237640_cgraph.png |binary inst/documentation/html/Predict_8h-source.html | 14 inst/documentation/html/Predict_8h.html | 18 inst/documentation/html/Predict_8h__dep__incl.map | 30 inst/documentation/html/Predict_8h__dep__incl.md5 | 2 inst/documentation/html/Predict_8h__dep__incl.png |binary inst/documentation/html/Predict_8h_daf8a0eb8790ebf14f0e265de164d50e_cgraph.map | 32 inst/documentation/html/Predict_8h_daf8a0eb8790ebf14f0e265de164d50e_cgraph.md5 | 2 inst/documentation/html/Predict_8h_daf8a0eb8790ebf14f0e265de164d50e_cgraph.png |binary inst/documentation/html/RandomForest_8c-source.html | 14 inst/documentation/html/RandomForest_8c.html | 18 inst/documentation/html/RandomForest_8c_4f54420cb561055a4e545f7e1359fb87_cgraph.map | 98 inst/documentation/html/RandomForest_8c_4f54420cb561055a4e545f7e1359fb87_cgraph.md5 | 2 inst/documentation/html/RandomForest_8c_4f54420cb561055a4e545f7e1359fb87_cgraph.png |binary inst/documentation/html/RandomForest_8c__incl.map | 30 inst/documentation/html/RandomForest_8c__incl.md5 | 2 inst/documentation/html/RandomForest_8c__incl.png |binary inst/documentation/html/S3Classes_8c-source.html | 14 inst/documentation/html/S3Classes_8c.html | 42 inst/documentation/html/S3Classes_8c__incl.map | 30 inst/documentation/html/S3Classes_8c__incl.md5 | 2 inst/documentation/html/S3Classes_8c__incl.png |binary inst/documentation/html/S3Classes_8h-source.html | 14 inst/documentation/html/S3Classes_8h.html | 42 inst/documentation/html/S3Classes_8h__dep__incl.map | 30 inst/documentation/html/S3Classes_8h__dep__incl.md5 | 2 inst/documentation/html/S3Classes_8h__dep__incl.png |binary inst/documentation/html/Splits_8c-source.html | 14 inst/documentation/html/Splits_8c.html | 28 inst/documentation/html/Splits_8c_00d4080fae6513962bd1e54ec9d476bc_cgraph.map | 6 inst/documentation/html/Splits_8c_00d4080fae6513962bd1e54ec9d476bc_cgraph.md5 | 2 inst/documentation/html/Splits_8c_00d4080fae6513962bd1e54ec9d476bc_cgraph.png |binary inst/documentation/html/Splits_8c_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.map | 8 inst/documentation/html/Splits_8c_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.md5 | 2 inst/documentation/html/Splits_8c_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.png |binary inst/documentation/html/Splits_8c_7bda94db4217f68594d347d4498576a6_cgraph.map | 28 inst/documentation/html/Splits_8c_7bda94db4217f68594d347d4498576a6_cgraph.md5 | 2 inst/documentation/html/Splits_8c_7bda94db4217f68594d347d4498576a6_cgraph.png |binary inst/documentation/html/Splits_8c_99df49df1a0061e2fe476f531285b0a3_cgraph.map | 12 inst/documentation/html/Splits_8c_99df49df1a0061e2fe476f531285b0a3_cgraph.md5 | 2 inst/documentation/html/Splits_8c_99df49df1a0061e2fe476f531285b0a3_cgraph.png |binary inst/documentation/html/Splits_8c__incl.map | 30 inst/documentation/html/Splits_8c__incl.md5 | 2 inst/documentation/html/Splits_8c__incl.png |binary inst/documentation/html/Splits_8h-source.html | 14 inst/documentation/html/Splits_8h.html | 24 inst/documentation/html/Splits_8h_00d4080fae6513962bd1e54ec9d476bc_cgraph.map | 6 inst/documentation/html/Splits_8h_00d4080fae6513962bd1e54ec9d476bc_cgraph.md5 | 2 inst/documentation/html/Splits_8h_00d4080fae6513962bd1e54ec9d476bc_cgraph.png |binary inst/documentation/html/Splits_8h_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.map | 8 inst/documentation/html/Splits_8h_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.md5 | 2 inst/documentation/html/Splits_8h_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.png |binary inst/documentation/html/Splits_8h__dep__incl.map | 30 inst/documentation/html/Splits_8h__dep__incl.md5 | 2 inst/documentation/html/Splits_8h__dep__incl.png |binary inst/documentation/html/SurrogateSplits_8c-source.html | 14 inst/documentation/html/SurrogateSplits_8c.html | 22 inst/documentation/html/SurrogateSplits_8c_378f9c4110050c0d1762c6347d53379b_cgraph.map | 52 inst/documentation/html/SurrogateSplits_8c_378f9c4110050c0d1762c6347d53379b_cgraph.md5 | 2 inst/documentation/html/SurrogateSplits_8c_378f9c4110050c0d1762c6347d53379b_cgraph.png |binary inst/documentation/html/SurrogateSplits_8c_6f9f8c3b4147854cacc43d67a055d911_cgraph.map | 24 inst/documentation/html/SurrogateSplits_8c_6f9f8c3b4147854cacc43d67a055d911_cgraph.md5 | 2 inst/documentation/html/SurrogateSplits_8c_6f9f8c3b4147854cacc43d67a055d911_cgraph.png |binary inst/documentation/html/SurrogateSplits_8c__incl.map | 30 inst/documentation/html/SurrogateSplits_8c__incl.md5 | 2 inst/documentation/html/SurrogateSplits_8c__incl.png |binary inst/documentation/html/SurrogateSplits_8c_fd8931db67339ca2bb679d8d38135275_cgraph.map | 50 inst/documentation/html/SurrogateSplits_8c_fd8931db67339ca2bb679d8d38135275_cgraph.md5 | 2 inst/documentation/html/SurrogateSplits_8c_fd8931db67339ca2bb679d8d38135275_cgraph.png |binary inst/documentation/html/SurrogateSplits_8h-source.html | 14 inst/documentation/html/SurrogateSplits_8h.html | 20 inst/documentation/html/SurrogateSplits_8h_6f9f8c3b4147854cacc43d67a055d911_cgraph.map | 24 inst/documentation/html/SurrogateSplits_8h_6f9f8c3b4147854cacc43d67a055d911_cgraph.md5 | 2 inst/documentation/html/SurrogateSplits_8h_6f9f8c3b4147854cacc43d67a055d911_cgraph.png |binary inst/documentation/html/SurrogateSplits_8h__dep__incl.map | 30 inst/documentation/html/SurrogateSplits_8h__dep__incl.md5 | 2 inst/documentation/html/SurrogateSplits_8h__dep__incl.png |binary inst/documentation/html/SurrogateSplits_8h_fd8931db67339ca2bb679d8d38135275_cgraph.map | 50 inst/documentation/html/SurrogateSplits_8h_fd8931db67339ca2bb679d8d38135275_cgraph.md5 | 2 inst/documentation/html/SurrogateSplits_8h_fd8931db67339ca2bb679d8d38135275_cgraph.png |binary inst/documentation/html/TestStatistic_8c-source.html | 14 inst/documentation/html/TestStatistic_8c.html | 26 inst/documentation/html/TestStatistic_8c_499b26b98aaf073dc66135ecde8ad851_cgraph.map | 10 inst/documentation/html/TestStatistic_8c_499b26b98aaf073dc66135ecde8ad851_cgraph.md5 | 2 inst/documentation/html/TestStatistic_8c_499b26b98aaf073dc66135ecde8ad851_cgraph.png |binary inst/documentation/html/TestStatistic_8c_6939f019d2c7f42ae824776043a8c704_cgraph.map | 4 inst/documentation/html/TestStatistic_8c_6939f019d2c7f42ae824776043a8c704_cgraph.md5 | 2 inst/documentation/html/TestStatistic_8c_6939f019d2c7f42ae824776043a8c704_cgraph.png |binary inst/documentation/html/TestStatistic_8c_825d2b1db2c719f8d1c2e2ec3f79e1a4_cgraph.map | 2 inst/documentation/html/TestStatistic_8c_825d2b1db2c719f8d1c2e2ec3f79e1a4_cgraph.md5 | 2 inst/documentation/html/TestStatistic_8c_825d2b1db2c719f8d1c2e2ec3f79e1a4_cgraph.png |binary inst/documentation/html/TestStatistic_8c__incl.map | 30 inst/documentation/html/TestStatistic_8c__incl.md5 | 2 inst/documentation/html/TestStatistic_8c__incl.png |binary inst/documentation/html/TestStatistic_8c_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.map | 8 inst/documentation/html/TestStatistic_8c_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.md5 | 2 inst/documentation/html/TestStatistic_8c_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.png |binary inst/documentation/html/TestStatistic_8h-source.html | 14 inst/documentation/html/TestStatistic_8h.html | 20 inst/documentation/html/TestStatistic_8h__dep__incl.map | 30 inst/documentation/html/TestStatistic_8h__dep__incl.md5 | 2 inst/documentation/html/TestStatistic_8h__dep__incl.png |binary inst/documentation/html/TestStatistic_8h_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.map | 8 inst/documentation/html/TestStatistic_8h_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.md5 | 2 inst/documentation/html/TestStatistic_8h_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.png |binary inst/documentation/html/TreeGrow_8c-source.html | 18 inst/documentation/html/TreeGrow_8c.html | 22 inst/documentation/html/TreeGrow_8c_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.map | 98 inst/documentation/html/TreeGrow_8c_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.md5 | 2 inst/documentation/html/TreeGrow_8c_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.png |binary inst/documentation/html/TreeGrow_8c__incl.map | 30 inst/documentation/html/TreeGrow_8c__incl.md5 | 2 inst/documentation/html/TreeGrow_8c__incl.png |binary inst/documentation/html/TreeGrow_8c_f9fe6e74563480c8eb5e4332fe9bca22_cgraph.map | 98 inst/documentation/html/TreeGrow_8c_f9fe6e74563480c8eb5e4332fe9bca22_cgraph.md5 | 2 inst/documentation/html/TreeGrow_8c_f9fe6e74563480c8eb5e4332fe9bca22_cgraph.png |binary inst/documentation/html/TreeGrow_8h-source.html | 14 inst/documentation/html/TreeGrow_8h.html | 20 inst/documentation/html/TreeGrow_8h_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.map | 98 inst/documentation/html/TreeGrow_8h_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.md5 | 2 inst/documentation/html/TreeGrow_8h_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.png |binary inst/documentation/html/TreeGrow_8h__dep__incl.map | 30 inst/documentation/html/TreeGrow_8h__dep__incl.md5 | 2 inst/documentation/html/TreeGrow_8h__dep__incl.png |binary inst/documentation/html/Utils_8c-source.html | 14 inst/documentation/html/Utils_8c.html | 64 inst/documentation/html/Utils_8c_0d9b1b1601f9e2760200af93d21c59af_cgraph.map | 2 inst/documentation/html/Utils_8c_0d9b1b1601f9e2760200af93d21c59af_cgraph.md5 | 2 inst/documentation/html/Utils_8c_0d9b1b1601f9e2760200af93d21c59af_cgraph.png |binary inst/documentation/html/Utils_8c_18acbfc80e9ea6db45a010ccf7bfeafd_cgraph.map | 2 inst/documentation/html/Utils_8c_18acbfc80e9ea6db45a010ccf7bfeafd_cgraph.md5 | 2 inst/documentation/html/Utils_8c_18acbfc80e9ea6db45a010ccf7bfeafd_cgraph.png |binary inst/documentation/html/Utils_8c_2f3955eb1326f77826baad7194f6ea67_cgraph.map | 2 inst/documentation/html/Utils_8c_2f3955eb1326f77826baad7194f6ea67_cgraph.md5 | 2 inst/documentation/html/Utils_8c_2f3955eb1326f77826baad7194f6ea67_cgraph.png |binary inst/documentation/html/Utils_8c_36672b428d262a38ef8d14000f92f0f5_cgraph.map | 6 inst/documentation/html/Utils_8c_36672b428d262a38ef8d14000f92f0f5_cgraph.md5 | 2 inst/documentation/html/Utils_8c_36672b428d262a38ef8d14000f92f0f5_cgraph.png |binary inst/documentation/html/Utils_8c_4534205c84c2784248b60818d7c2f3d6_cgraph.map | 4 inst/documentation/html/Utils_8c_4534205c84c2784248b60818d7c2f3d6_cgraph.md5 | 2 inst/documentation/html/Utils_8c_4534205c84c2784248b60818d7c2f3d6_cgraph.png |binary inst/documentation/html/Utils_8c_74af72977c02a5b247841e52a3313ae1_cgraph.map | 2 inst/documentation/html/Utils_8c_74af72977c02a5b247841e52a3313ae1_cgraph.md5 | 2 inst/documentation/html/Utils_8c_74af72977c02a5b247841e52a3313ae1_cgraph.png |binary inst/documentation/html/Utils_8c_88c1a807c7856d57d07d10027d588602_cgraph.map | 2 inst/documentation/html/Utils_8c_88c1a807c7856d57d07d10027d588602_cgraph.md5 | 2 inst/documentation/html/Utils_8c_88c1a807c7856d57d07d10027d588602_cgraph.png |binary inst/documentation/html/Utils_8c_95f5ed4c75d42e2e98ed09c9c9d48ff5_cgraph.map | 2 inst/documentation/html/Utils_8c_95f5ed4c75d42e2e98ed09c9c9d48ff5_cgraph.md5 | 2 inst/documentation/html/Utils_8c_95f5ed4c75d42e2e98ed09c9c9d48ff5_cgraph.png |binary inst/documentation/html/Utils_8c_9aa84c21406d338bd7116cbe9444ea3c_cgraph.map | 10 inst/documentation/html/Utils_8c_9aa84c21406d338bd7116cbe9444ea3c_cgraph.md5 | 2 inst/documentation/html/Utils_8c_9aa84c21406d338bd7116cbe9444ea3c_cgraph.png |binary inst/documentation/html/Utils_8c__incl.map | 30 inst/documentation/html/Utils_8c__incl.md5 | 2 inst/documentation/html/Utils_8c__incl.png |binary inst/documentation/html/Utils_8c_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.map | 6 inst/documentation/html/Utils_8c_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.md5 | 2 inst/documentation/html/Utils_8c_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.png |binary inst/documentation/html/Utils_8c_ccce6f00d55276c0a01b30651f1c206c_cgraph.map | 6 inst/documentation/html/Utils_8c_ccce6f00d55276c0a01b30651f1c206c_cgraph.md5 | 2 inst/documentation/html/Utils_8c_ccce6f00d55276c0a01b30651f1c206c_cgraph.png |binary inst/documentation/html/Utils_8c_cfdb060aa1651f62dab395e2158f982e_cgraph.map | 8 inst/documentation/html/Utils_8c_cfdb060aa1651f62dab395e2158f982e_cgraph.md5 | 2 inst/documentation/html/Utils_8c_cfdb060aa1651f62dab395e2158f982e_cgraph.png |binary inst/documentation/html/Utils_8c_d104efc7b7bfd39b34f24b69608bbbf7_cgraph.map | 4 inst/documentation/html/Utils_8c_d104efc7b7bfd39b34f24b69608bbbf7_cgraph.md5 | 2 inst/documentation/html/Utils_8c_d104efc7b7bfd39b34f24b69608bbbf7_cgraph.png |binary inst/documentation/html/Utils_8c_dfb2cc4acd2e6897f67e6467e241aba6_cgraph.map | 2 inst/documentation/html/Utils_8c_dfb2cc4acd2e6897f67e6467e241aba6_cgraph.md5 | 2 inst/documentation/html/Utils_8c_dfb2cc4acd2e6897f67e6467e241aba6_cgraph.png |binary inst/documentation/html/Utils_8c_ea653a331bb9774d8899a25693e748c9_cgraph.map | 6 inst/documentation/html/Utils_8c_ea653a331bb9774d8899a25693e748c9_cgraph.md5 | 2 inst/documentation/html/Utils_8c_ea653a331bb9774d8899a25693e748c9_cgraph.png |binary inst/documentation/html/Utils_8c_f9716d8427688ac52d3dd254337316b1_cgraph.map | 6 inst/documentation/html/Utils_8c_f9716d8427688ac52d3dd254337316b1_cgraph.md5 | 2 inst/documentation/html/Utils_8c_f9716d8427688ac52d3dd254337316b1_cgraph.png |binary inst/documentation/html/Utils_8c_ff0eae9aa0175cd8fe73324707418ce0_cgraph.map | 2 inst/documentation/html/Utils_8c_ff0eae9aa0175cd8fe73324707418ce0_cgraph.md5 | 2 inst/documentation/html/Utils_8c_ff0eae9aa0175cd8fe73324707418ce0_cgraph.png |binary inst/documentation/html/Utils_8h-source.html | 14 inst/documentation/html/Utils_8h.html | 38 inst/documentation/html/Utils_8h_88c1a807c7856d57d07d10027d588602_cgraph.map | 2 inst/documentation/html/Utils_8h_88c1a807c7856d57d07d10027d588602_cgraph.md5 | 2 inst/documentation/html/Utils_8h_88c1a807c7856d57d07d10027d588602_cgraph.png |binary inst/documentation/html/Utils_8h__dep__incl.map | 30 inst/documentation/html/Utils_8h__dep__incl.md5 | 2 inst/documentation/html/Utils_8h__dep__incl.png |binary inst/documentation/html/Utils_8h_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.map | 6 inst/documentation/html/Utils_8h_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.md5 | 2 inst/documentation/html/Utils_8h_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.png |binary inst/documentation/html/Utils_8h_ccce6f00d55276c0a01b30651f1c206c_cgraph.map | 8 inst/documentation/html/Utils_8h_ccce6f00d55276c0a01b30651f1c206c_cgraph.md5 | 2 inst/documentation/html/Utils_8h_ccce6f00d55276c0a01b30651f1c206c_cgraph.png |binary inst/documentation/html/Utils_8h_f9716d8427688ac52d3dd254337316b1_cgraph.map | 6 inst/documentation/html/Utils_8h_f9716d8427688ac52d3dd254337316b1_cgraph.md5 | 2 inst/documentation/html/Utils_8h_f9716d8427688ac52d3dd254337316b1_cgraph.png |binary inst/documentation/html/Utils_8h_ff0eae9aa0175cd8fe73324707418ce0_cgraph.map | 2 inst/documentation/html/Utils_8h_ff0eae9aa0175cd8fe73324707418ce0_cgraph.md5 | 2 inst/documentation/html/Utils_8h_ff0eae9aa0175cd8fe73324707418ce0_cgraph.png |binary inst/documentation/html/dir_6c30642956b040afcd6ed9c9ec492c91.html | 10 inst/documentation/html/dir_6c30642956b040afcd6ed9c9ec492c91_dep.map | 2 inst/documentation/html/dir_6c30642956b040afcd6ed9c9ec492c91_dep.png |binary inst/documentation/html/dirs.html | 8 inst/documentation/html/doxygen.css | 666 -- inst/documentation/html/files.html | 8 inst/documentation/html/globals.html | 8 inst/documentation/html/globals_0x62.html | 8 inst/documentation/html/globals_0x63.html | 16 inst/documentation/html/globals_0x67.html | 12 inst/documentation/html/globals_0x68.html | 8 inst/documentation/html/globals_0x69.html | 8 inst/documentation/html/globals_0x6c.html | 8 inst/documentation/html/globals_0x6d.html | 52 inst/documentation/html/globals_0x6e.html | 8 inst/documentation/html/globals_0x70.html | 8 inst/documentation/html/globals_0x71.html | 8 inst/documentation/html/globals_0x72.html | 8 inst/documentation/html/globals_0x73.html | 8 inst/documentation/html/globals_0x74.html | 8 inst/documentation/html/globals_0x75.html | 8 inst/documentation/html/globals_defs.html | 8 inst/documentation/html/globals_func.html | 16 inst/documentation/html/globals_func_0x67.html | 12 inst/documentation/html/globals_func_0x68.html | 8 inst/documentation/html/globals_func_0x69.html | 8 inst/documentation/html/globals_func_0x6c.html | 8 inst/documentation/html/globals_func_0x6d.html | 52 inst/documentation/html/globals_func_0x6e.html | 8 inst/documentation/html/globals_func_0x70.html | 8 inst/documentation/html/globals_func_0x72.html | 8 inst/documentation/html/globals_func_0x73.html | 8 inst/documentation/html/globals_func_0x75.html | 8 inst/documentation/html/globals_vars.html | 8 inst/documentation/html/graph_legend.dot | 38 inst/documentation/html/graph_legend.html | 10 inst/documentation/html/graph_legend.png |binary inst/documentation/html/main.html | 8 inst/documentation/html/mvt_8f-source.html | 1820 ++--- inst/documentation/html/mvt_8f.html | 1449 ++++ inst/documentation/html/mvt_8f_01b86430a337d3d8b91bcf9346d7dd3b_cgraph.map |only inst/documentation/html/mvt_8f_01b86430a337d3d8b91bcf9346d7dd3b_cgraph.md5 |only inst/documentation/html/mvt_8f_01b86430a337d3d8b91bcf9346d7dd3b_cgraph.png |only inst/documentation/html/mvt_8f_151b69372f580727b65189d3ba4c08e4_cgraph.map |only inst/documentation/html/mvt_8f_151b69372f580727b65189d3ba4c08e4_cgraph.md5 |only inst/documentation/html/mvt_8f_151b69372f580727b65189d3ba4c08e4_cgraph.png |only inst/documentation/html/mvt_8f_1ab822a6524a9096bf2ec00253f890e3_cgraph.map |only inst/documentation/html/mvt_8f_1ab822a6524a9096bf2ec00253f890e3_cgraph.md5 |only inst/documentation/html/mvt_8f_1ab822a6524a9096bf2ec00253f890e3_cgraph.png |only inst/documentation/html/mvt_8f_1e3a3eb63d17fe37f686fc1f571beccc_cgraph.map |only inst/documentation/html/mvt_8f_1e3a3eb63d17fe37f686fc1f571beccc_cgraph.md5 |only inst/documentation/html/mvt_8f_1e3a3eb63d17fe37f686fc1f571beccc_cgraph.png |only inst/documentation/html/mvt_8f_33d5a1ab44132a99ec34a2a0c899cdcb_cgraph.map |only inst/documentation/html/mvt_8f_33d5a1ab44132a99ec34a2a0c899cdcb_cgraph.md5 |only inst/documentation/html/mvt_8f_33d5a1ab44132a99ec34a2a0c899cdcb_cgraph.png |only inst/documentation/html/mvt_8f_3652f2cb737bf864d78fff1a650ca287_cgraph.map |only inst/documentation/html/mvt_8f_3652f2cb737bf864d78fff1a650ca287_cgraph.md5 |only inst/documentation/html/mvt_8f_3652f2cb737bf864d78fff1a650ca287_cgraph.png |only inst/documentation/html/mvt_8f_4b51e2fd2b5378c70a36771ac4cfed04_cgraph.map |only inst/documentation/html/mvt_8f_4b51e2fd2b5378c70a36771ac4cfed04_cgraph.md5 |only inst/documentation/html/mvt_8f_4b51e2fd2b5378c70a36771ac4cfed04_cgraph.png |only inst/documentation/html/mvt_8f_53a2e447659c04eb0ad551cf58c77d37_cgraph.map |only inst/documentation/html/mvt_8f_53a2e447659c04eb0ad551cf58c77d37_cgraph.md5 |only inst/documentation/html/mvt_8f_53a2e447659c04eb0ad551cf58c77d37_cgraph.png |only inst/documentation/html/mvt_8f_5411cfeafe20ca2bd17c962f8c8c0e84_cgraph.map |only inst/documentation/html/mvt_8f_5411cfeafe20ca2bd17c962f8c8c0e84_cgraph.md5 |only inst/documentation/html/mvt_8f_5411cfeafe20ca2bd17c962f8c8c0e84_cgraph.png |only inst/documentation/html/mvt_8f_597ed59b5410765b8afcc6527c9552e7_cgraph.map |only inst/documentation/html/mvt_8f_597ed59b5410765b8afcc6527c9552e7_cgraph.md5 |only inst/documentation/html/mvt_8f_597ed59b5410765b8afcc6527c9552e7_cgraph.png |only inst/documentation/html/mvt_8f_6b32b1cb4d3243c9ffef2622d8cfa65d_cgraph.map |only inst/documentation/html/mvt_8f_6b32b1cb4d3243c9ffef2622d8cfa65d_cgraph.md5 |only inst/documentation/html/mvt_8f_6b32b1cb4d3243c9ffef2622d8cfa65d_cgraph.png |only inst/documentation/html/mvt_8f_7319671edcfbb7bd0e50690518e644fc_cgraph.map |only inst/documentation/html/mvt_8f_7319671edcfbb7bd0e50690518e644fc_cgraph.md5 |only inst/documentation/html/mvt_8f_7319671edcfbb7bd0e50690518e644fc_cgraph.png |only inst/documentation/html/mvt_8f_81b566eaa4178de04b31e15475cde3bf_cgraph.map |only inst/documentation/html/mvt_8f_81b566eaa4178de04b31e15475cde3bf_cgraph.md5 |only inst/documentation/html/mvt_8f_81b566eaa4178de04b31e15475cde3bf_cgraph.png |only inst/documentation/html/mvt_8f_9d0fae33894aee91124b4f3695494f7e_cgraph.map |only inst/documentation/html/mvt_8f_9d0fae33894aee91124b4f3695494f7e_cgraph.md5 |only inst/documentation/html/mvt_8f_9d0fae33894aee91124b4f3695494f7e_cgraph.png |only inst/documentation/html/mvt_8f_ae28c99f4b4ff2300cfa96ffa62bf799_cgraph.map |only inst/documentation/html/mvt_8f_ae28c99f4b4ff2300cfa96ffa62bf799_cgraph.md5 |only inst/documentation/html/mvt_8f_ae28c99f4b4ff2300cfa96ffa62bf799_cgraph.png |only inst/documentation/html/mvt_8f_cb964c59585b62348fb9653f052c669e_cgraph.map |only inst/documentation/html/mvt_8f_cb964c59585b62348fb9653f052c669e_cgraph.md5 |only inst/documentation/html/mvt_8f_cb964c59585b62348fb9653f052c669e_cgraph.png |only inst/documentation/html/mvt_8f_e6a30b16d74f1c585c70de45080c0805_cgraph.map |only inst/documentation/html/mvt_8f_e6a30b16d74f1c585c70de45080c0805_cgraph.md5 |only inst/documentation/html/mvt_8f_e6a30b16d74f1c585c70de45080c0805_cgraph.png |only inst/documentation/html/mvt_8h-source.html | 14 inst/documentation/html/mvt_8h.html | 16 inst/documentation/html/mvt_8h__dep__incl.map | 30 inst/documentation/html/mvt_8h__dep__incl.md5 | 2 inst/documentation/html/mvt_8h__dep__incl.png |binary inst/documentation/html/pages.html | 8 inst/documentation/html/party_8h-source.html | 14 inst/documentation/html/party_8h.html | 32 inst/documentation/html/party_8h__dep__incl.map | 28 inst/documentation/html/party_8h__dep__incl.md5 | 2 inst/documentation/html/party_8h__dep__incl.png |binary inst/documentation/html/party_8h__incl.map | 28 inst/documentation/html/party_8h__incl.md5 | 2 inst/documentation/html/party_8h__incl.png |binary inst/documentation/html/tabs.css | 7 inst/documentation/html/todo.html | 10 inst/documentation/latex/Classes_8c.tex | 226 inst/documentation/latex/Classes_8c_0e317821da8f3bc0fb6da5006abb81f6_cgraph.eps | 108 inst/documentation/latex/Classes_8c_0e317821da8f3bc0fb6da5006abb81f6_cgraph.md5 | 2 inst/documentation/latex/Classes_8c_0e317821da8f3bc0fb6da5006abb81f6_cgraph.pdf |binary inst/documentation/latex/Classes_8c__incl.eps | 498 - inst/documentation/latex/Classes_8c__incl.md5 | 2 inst/documentation/latex/Classes_8c__incl.pdf |binary inst/documentation/latex/Classes_8c_a160107e2d687d3fa2411af7e25763ef_cgraph.eps | 70 inst/documentation/latex/Classes_8c_a160107e2d687d3fa2411af7e25763ef_cgraph.md5 | 2 inst/documentation/latex/Classes_8c_a160107e2d687d3fa2411af7e25763ef_cgraph.pdf |binary inst/documentation/latex/Classes_8c_ba4726f56726372030e1e104b2f2b076_cgraph.eps | 70 inst/documentation/latex/Classes_8c_ba4726f56726372030e1e104b2f2b076_cgraph.md5 | 2 inst/documentation/latex/Classes_8c_ba4726f56726372030e1e104b2f2b076_cgraph.pdf | 233 inst/documentation/latex/Classes_8c_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.eps | 70 inst/documentation/latex/Classes_8c_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.md5 | 2 inst/documentation/latex/Classes_8c_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.pdf |binary inst/documentation/latex/Classes_8h.tex | 218 inst/documentation/latex/Classes_8h_0e317821da8f3bc0fb6da5006abb81f6_cgraph.eps | 108 inst/documentation/latex/Classes_8h_0e317821da8f3bc0fb6da5006abb81f6_cgraph.md5 | 2 inst/documentation/latex/Classes_8h_0e317821da8f3bc0fb6da5006abb81f6_cgraph.pdf |binary inst/documentation/latex/Classes_8h__dep__incl.eps | 350 - inst/documentation/latex/Classes_8h__dep__incl.md5 | 2 inst/documentation/latex/Classes_8h__dep__incl.pdf |binary inst/documentation/latex/Classes_8h_a160107e2d687d3fa2411af7e25763ef_cgraph.eps | 70 inst/documentation/latex/Classes_8h_a160107e2d687d3fa2411af7e25763ef_cgraph.md5 | 2 inst/documentation/latex/Classes_8h_a160107e2d687d3fa2411af7e25763ef_cgraph.pdf |binary inst/documentation/latex/Classes_8h_ba4726f56726372030e1e104b2f2b076_cgraph.eps | 70 inst/documentation/latex/Classes_8h_ba4726f56726372030e1e104b2f2b076_cgraph.md5 | 2 inst/documentation/latex/Classes_8h_ba4726f56726372030e1e104b2f2b076_cgraph.pdf | 233 inst/documentation/latex/Classes_8h_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.eps | 70 inst/documentation/latex/Classes_8h_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.md5 | 2 inst/documentation/latex/Classes_8h_fd6cfc2dd239b138d91e92a8ce9353f8_cgraph.pdf |binary inst/documentation/latex/Convenience_8c.tex | 12 inst/documentation/latex/Convenience_8c_26159cd74cebf8ff7073ff588864e9ab_cgraph.eps | 298 inst/documentation/latex/Convenience_8c_26159cd74cebf8ff7073ff588864e9ab_cgraph.md5 | 2 inst/documentation/latex/Convenience_8c_26159cd74cebf8ff7073ff588864e9ab_cgraph.pdf |binary inst/documentation/latex/Convenience_8c_8d5dcca68051449e29f3b857d375c4a0_cgraph.eps | 184 inst/documentation/latex/Convenience_8c_8d5dcca68051449e29f3b857d375c4a0_cgraph.md5 | 2 inst/documentation/latex/Convenience_8c_8d5dcca68051449e29f3b857d375c4a0_cgraph.pdf |binary inst/documentation/latex/Convenience_8c__incl.eps | 498 - inst/documentation/latex/Convenience_8c__incl.md5 | 2 inst/documentation/latex/Convenience_8c__incl.pdf |binary inst/documentation/latex/Convenience_8c_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.eps | 184 inst/documentation/latex/Convenience_8c_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.md5 | 2 inst/documentation/latex/Convenience_8c_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.pdf |binary inst/documentation/latex/Convenience_8c_a1e8edb4fa73a26e73bc153c45a867b0_cgraph.eps | 146 inst/documentation/latex/Convenience_8c_a1e8edb4fa73a26e73bc153c45a867b0_cgraph.md5 | 2 inst/documentation/latex/Convenience_8c_a1e8edb4fa73a26e73bc153c45a867b0_cgraph.pdf |binary inst/documentation/latex/Convenience_8c_f39bdd14f23726fdd6bf74888ffbf920_cgraph.eps | 184 inst/documentation/latex/Convenience_8c_f39bdd14f23726fdd6bf74888ffbf920_cgraph.md5 | 2 inst/documentation/latex/Convenience_8c_f39bdd14f23726fdd6bf74888ffbf920_cgraph.pdf |binary inst/documentation/latex/Convenience_8h.tex | 10 inst/documentation/latex/Convenience_8h_26159cd74cebf8ff7073ff588864e9ab_cgraph.eps | 298 inst/documentation/latex/Convenience_8h_26159cd74cebf8ff7073ff588864e9ab_cgraph.md5 | 2 inst/documentation/latex/Convenience_8h_26159cd74cebf8ff7073ff588864e9ab_cgraph.pdf |binary inst/documentation/latex/Convenience_8h_8d5dcca68051449e29f3b857d375c4a0_cgraph.eps | 184 inst/documentation/latex/Convenience_8h_8d5dcca68051449e29f3b857d375c4a0_cgraph.md5 | 2 inst/documentation/latex/Convenience_8h_8d5dcca68051449e29f3b857d375c4a0_cgraph.pdf |binary inst/documentation/latex/Convenience_8h__dep__incl.eps | 350 - inst/documentation/latex/Convenience_8h__dep__incl.md5 | 2 inst/documentation/latex/Convenience_8h__dep__incl.pdf |binary inst/documentation/latex/Convenience_8h_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.eps | 184 inst/documentation/latex/Convenience_8h_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.md5 | 2 inst/documentation/latex/Convenience_8h_a1bfc91db235a3a166a39ed1e0a224d7_cgraph.pdf |binary inst/documentation/latex/Convenience_8h_f39bdd14f23726fdd6bf74888ffbf920_cgraph.eps | 184 inst/documentation/latex/Convenience_8h_f39bdd14f23726fdd6bf74888ffbf920_cgraph.md5 | 2 inst/documentation/latex/Convenience_8h_f39bdd14f23726fdd6bf74888ffbf920_cgraph.pdf |binary inst/documentation/latex/Distributions_8c.tex | 12 inst/documentation/latex/Distributions_8c_06bd58bb395eb700a056db4498c4db9c_cgraph.eps | 1350 ++-- inst/documentation/latex/Distributions_8c_06bd58bb395eb700a056db4498c4db9c_cgraph.md5 | 2 inst/documentation/latex/Distributions_8c_06bd58bb395eb700a056db4498c4db9c_cgraph.pdf |binary inst/documentation/latex/Distributions_8c_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.eps | 70 inst/documentation/latex/Distributions_8c_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.md5 | 2 inst/documentation/latex/Distributions_8c_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.pdf | 226 inst/documentation/latex/Distributions_8c_23e23063d2a1c5ecfb6e1603d0edc228_cgraph.eps | 146 inst/documentation/latex/Distributions_8c_23e23063d2a1c5ecfb6e1603d0edc228_cgraph.md5 | 2 inst/documentation/latex/Distributions_8c_23e23063d2a1c5ecfb6e1603d0edc228_cgraph.pdf |binary inst/documentation/latex/Distributions_8c_662bfb70585ca9948ff29d7ed370273b_cgraph.eps | 1288 ++-- inst/documentation/latex/Distributions_8c_662bfb70585ca9948ff29d7ed370273b_cgraph.md5 | 2 inst/documentation/latex/Distributions_8c_662bfb70585ca9948ff29d7ed370273b_cgraph.pdf |binary inst/documentation/latex/Distributions_8c__incl.eps | 498 - inst/documentation/latex/Distributions_8c__incl.md5 | 2 inst/documentation/latex/Distributions_8c__incl.pdf |binary inst/documentation/latex/Distributions_8c_f9d46ed74aa1e81c94ddbfdbf5cf504f_cgraph.eps | 70 inst/documentation/latex/Distributions_8c_f9d46ed74aa1e81c94ddbfdbf5cf504f_cgraph.md5 | 2 inst/documentation/latex/Distributions_8c_f9d46ed74aa1e81c94ddbfdbf5cf504f_cgraph.pdf |binary inst/documentation/latex/Distributions_8h.tex | 6 inst/documentation/latex/Distributions_8h_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.eps | 70 inst/documentation/latex/Distributions_8h_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.md5 | 2 inst/documentation/latex/Distributions_8h_0b0373aa22dcf8b8ecf6b9c560db9c70_cgraph.pdf | 226 inst/documentation/latex/Distributions_8h_579a9b99cc4ab820a62f636869788cf8_cgraph.eps | 1288 ++-- inst/documentation/latex/Distributions_8h_579a9b99cc4ab820a62f636869788cf8_cgraph.md5 | 2 inst/documentation/latex/Distributions_8h_579a9b99cc4ab820a62f636869788cf8_cgraph.pdf |binary inst/documentation/latex/Distributions_8h__dep__incl.eps | 350 - inst/documentation/latex/Distributions_8h__dep__incl.md5 | 2 inst/documentation/latex/Distributions_8h__dep__incl.pdf |binary inst/documentation/latex/IndependenceTest_8c.tex | 26 inst/documentation/latex/IndependenceTest_8c_3b7d8664edac79abe6c4f528ad2c4f35_cgraph.eps |only inst/documentation/latex/IndependenceTest_8c_3b7d8664edac79abe6c4f528ad2c4f35_cgraph.md5 |only inst/documentation/latex/IndependenceTest_8c_3b7d8664edac79abe6c4f528ad2c4f35_cgraph.pdf |only inst/documentation/latex/IndependenceTest_8c__incl.eps | 498 - inst/documentation/latex/IndependenceTest_8c__incl.md5 | 2 inst/documentation/latex/IndependenceTest_8c__incl.pdf |binary inst/documentation/latex/IndependenceTest_8c_aab8e2db15687b6b95f802dd1719ed54_cgraph.eps | 1314 ++-- inst/documentation/latex/IndependenceTest_8c_aab8e2db15687b6b95f802dd1719ed54_cgraph.md5 | 2 inst/documentation/latex/IndependenceTest_8c_aab8e2db15687b6b95f802dd1719ed54_cgraph.pdf |binary inst/documentation/latex/IndependenceTest_8c_b02275a67ad210d96fed9864590ee3ef_cgraph.eps | 748 +- inst/documentation/latex/IndependenceTest_8c_b02275a67ad210d96fed9864590ee3ef_cgraph.md5 | 2 inst/documentation/latex/IndependenceTest_8c_b02275a67ad210d96fed9864590ee3ef_cgraph.pdf |binary inst/documentation/latex/IndependenceTest_8c_d33688ffc38df769a95d6964e5bb193a_cgraph.eps | 800 +- inst/documentation/latex/IndependenceTest_8c_d33688ffc38df769a95d6964e5bb193a_cgraph.md5 | 2 inst/documentation/latex/IndependenceTest_8c_d33688ffc38df769a95d6964e5bb193a_cgraph.pdf |binary inst/documentation/latex/IndependenceTest_8c_e64c8d91a58113cee43788dc1663d645_cgraph.eps | 1276 ++-- inst/documentation/latex/IndependenceTest_8c_e64c8d91a58113cee43788dc1663d645_cgraph.md5 | 2 inst/documentation/latex/IndependenceTest_8c_e64c8d91a58113cee43788dc1663d645_cgraph.pdf |binary inst/documentation/latex/IndependenceTest_8c_f80dcff3dd9196b9f861fd83f4efa8ac_cgraph.eps | 2294 +++---- inst/documentation/latex/IndependenceTest_8c_f80dcff3dd9196b9f861fd83f4efa8ac_cgraph.md5 | 2 inst/documentation/latex/IndependenceTest_8c_f80dcff3dd9196b9f861fd83f4efa8ac_cgraph.pdf |binary inst/documentation/latex/IndependenceTest_8h.tex | 18 inst/documentation/latex/IndependenceTest_8h_84abb46c73e74364113fb61590f8faa0_cgraph.eps |only inst/documentation/latex/IndependenceTest_8h_84abb46c73e74364113fb61590f8faa0_cgraph.md5 |only inst/documentation/latex/IndependenceTest_8h_84abb46c73e74364113fb61590f8faa0_cgraph.pdf |only inst/documentation/latex/IndependenceTest_8h__dep__incl.eps | 350 - inst/documentation/latex/IndependenceTest_8h__dep__incl.md5 | 2 inst/documentation/latex/IndependenceTest_8h__dep__incl.pdf |binary inst/documentation/latex/IndependenceTest_8h_b02275a67ad210d96fed9864590ee3ef_cgraph.eps | 748 +- inst/documentation/latex/IndependenceTest_8h_b02275a67ad210d96fed9864590ee3ef_cgraph.md5 | 2 inst/documentation/latex/IndependenceTest_8h_b02275a67ad210d96fed9864590ee3ef_cgraph.pdf |binary inst/documentation/latex/IndependenceTest_8h_d33688ffc38df769a95d6964e5bb193a_cgraph.eps | 800 +- inst/documentation/latex/IndependenceTest_8h_d33688ffc38df769a95d6964e5bb193a_cgraph.md5 | 2 inst/documentation/latex/IndependenceTest_8h_d33688ffc38df769a95d6964e5bb193a_cgraph.pdf |binary inst/documentation/latex/LinearStatistic_8c.tex | 16 inst/documentation/latex/LinearStatistic_8c_58fff8082d3ab197994a21a10c422353_cgraph.eps | 184 inst/documentation/latex/LinearStatistic_8c_58fff8082d3ab197994a21a10c422353_cgraph.md5 | 2 inst/documentation/latex/LinearStatistic_8c_58fff8082d3ab197994a21a10c422353_cgraph.pdf |binary inst/documentation/latex/LinearStatistic_8c_6216ea560644c08002fb32756ae67dcc_cgraph.eps | 146 inst/documentation/latex/LinearStatistic_8c_6216ea560644c08002fb32756ae67dcc_cgraph.md5 | 2 inst/documentation/latex/LinearStatistic_8c_6216ea560644c08002fb32756ae67dcc_cgraph.pdf |binary inst/documentation/latex/LinearStatistic_8c_732bfc8e1797d8953482aa31f9b43e5f_cgraph.eps | 146 inst/documentation/latex/LinearStatistic_8c_732bfc8e1797d8953482aa31f9b43e5f_cgraph.md5 | 2 inst/documentation/latex/LinearStatistic_8c_732bfc8e1797d8953482aa31f9b43e5f_cgraph.pdf | 232 inst/documentation/latex/LinearStatistic_8c_94a0805ea258af79d426c095feee399a_cgraph.eps | 70 inst/documentation/latex/LinearStatistic_8c_94a0805ea258af79d426c095feee399a_cgraph.md5 | 2 inst/documentation/latex/LinearStatistic_8c_94a0805ea258af79d426c095feee399a_cgraph.pdf |binary inst/documentation/latex/LinearStatistic_8c__incl.eps | 498 - inst/documentation/latex/LinearStatistic_8c__incl.md5 | 2 inst/documentation/latex/LinearStatistic_8c__incl.pdf |binary inst/documentation/latex/LinearStatistic_8c_be383bcae17e8b3a1d5740ec16a9817a_cgraph.eps | 146 inst/documentation/latex/LinearStatistic_8c_be383bcae17e8b3a1d5740ec16a9817a_cgraph.md5 | 2 inst/documentation/latex/LinearStatistic_8c_be383bcae17e8b3a1d5740ec16a9817a_cgraph.pdf |binary inst/documentation/latex/LinearStatistic_8h.tex | 10 inst/documentation/latex/LinearStatistic_8h_6216ea560644c08002fb32756ae67dcc_cgraph.eps | 146 inst/documentation/latex/LinearStatistic_8h_6216ea560644c08002fb32756ae67dcc_cgraph.md5 | 2 inst/documentation/latex/LinearStatistic_8h_6216ea560644c08002fb32756ae67dcc_cgraph.pdf |binary inst/documentation/latex/LinearStatistic_8h_94a0805ea258af79d426c095feee399a_cgraph.eps | 70 inst/documentation/latex/LinearStatistic_8h_94a0805ea258af79d426c095feee399a_cgraph.md5 | 2 inst/documentation/latex/LinearStatistic_8h_94a0805ea258af79d426c095feee399a_cgraph.pdf |binary inst/documentation/latex/LinearStatistic_8h__dep__incl.eps | 350 - inst/documentation/latex/LinearStatistic_8h__dep__incl.md5 | 2 inst/documentation/latex/LinearStatistic_8h__dep__incl.pdf |binary inst/documentation/latex/Node_8c.tex | 20 inst/documentation/latex/Node_8c_1b0cb9ac9a78efda36001d9da708574d_cgraph.eps |only inst/documentation/latex/Node_8c_1b0cb9ac9a78efda36001d9da708574d_cgraph.md5 |only inst/documentation/latex/Node_8c_1b0cb9ac9a78efda36001d9da708574d_cgraph.pdf |only inst/documentation/latex/Node_8c_878214ca472c99cf036a426eb7cffb59_cgraph.eps | 2575 ++++---- inst/documentation/latex/Node_8c_878214ca472c99cf036a426eb7cffb59_cgraph.md5 | 2 inst/documentation/latex/Node_8c_878214ca472c99cf036a426eb7cffb59_cgraph.pdf |binary inst/documentation/latex/Node_8c__incl.eps | 498 - inst/documentation/latex/Node_8c__incl.md5 | 2 inst/documentation/latex/Node_8c__incl.pdf |binary inst/documentation/latex/Node_8h.tex | 14 inst/documentation/latex/Node_8h_1b0cb9ac9a78efda36001d9da708574d_cgraph.eps |only inst/documentation/latex/Node_8h_1b0cb9ac9a78efda36001d9da708574d_cgraph.md5 |only inst/documentation/latex/Node_8h_1b0cb9ac9a78efda36001d9da708574d_cgraph.pdf |only inst/documentation/latex/Node_8h__dep__incl.eps | 350 - inst/documentation/latex/Node_8h__dep__incl.md5 | 2 inst/documentation/latex/Node_8h__dep__incl.pdf |binary inst/documentation/latex/Predict_8c.tex | 30 inst/documentation/latex/Predict_8c_201fdee9dc7e3e71e90ea6609ed353cb_cgraph.eps | 188 inst/documentation/latex/Predict_8c_201fdee9dc7e3e71e90ea6609ed353cb_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_201fdee9dc7e3e71e90ea6609ed353cb_cgraph.pdf |binary inst/documentation/latex/Predict_8c_4a30a8aa916f294059b6e2cbcb9e29d5_cgraph.eps | 226 inst/documentation/latex/Predict_8c_4a30a8aa916f294059b6e2cbcb9e29d5_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_4a30a8aa916f294059b6e2cbcb9e29d5_cgraph.pdf |binary inst/documentation/latex/Predict_8c_4f6966402677cec07284a3e1bc25660f_cgraph.eps | 978 +-- inst/documentation/latex/Predict_8c_4f6966402677cec07284a3e1bc25660f_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_4f6966402677cec07284a3e1bc25660f_cgraph.pdf |binary inst/documentation/latex/Predict_8c_8964e7493ed9cb96c271b168b721e329_cgraph.eps | 266 inst/documentation/latex/Predict_8c_8964e7493ed9cb96c271b168b721e329_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_8964e7493ed9cb96c271b168b721e329_cgraph.pdf |binary inst/documentation/latex/Predict_8c_9a5170a24bc00b727527b80cec5ca60a_cgraph.eps | 894 +- inst/documentation/latex/Predict_8c_9a5170a24bc00b727527b80cec5ca60a_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_9a5170a24bc00b727527b80cec5ca60a_cgraph.pdf |binary inst/documentation/latex/Predict_8c__incl.eps | 498 - inst/documentation/latex/Predict_8c__incl.md5 | 2 inst/documentation/latex/Predict_8c__incl.pdf |binary inst/documentation/latex/Predict_8c_a508a31f1fd7cd3668ad81eb0d00dd66_cgraph.eps | 304 inst/documentation/latex/Predict_8c_a508a31f1fd7cd3668ad81eb0d00dd66_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_a508a31f1fd7cd3668ad81eb0d00dd66_cgraph.pdf |binary inst/documentation/latex/Predict_8c_ac36eff20575604b5d7558d512601d64_cgraph.eps | 840 +- inst/documentation/latex/Predict_8c_ac36eff20575604b5d7558d512601d64_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_ac36eff20575604b5d7558d512601d64_cgraph.pdf |binary inst/documentation/latex/Predict_8c_c0668d268fe5a4bad29fbf4ead39c526_cgraph.eps | 840 +- inst/documentation/latex/Predict_8c_c0668d268fe5a4bad29fbf4ead39c526_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_c0668d268fe5a4bad29fbf4ead39c526_cgraph.pdf |binary inst/documentation/latex/Predict_8c_c4f4e806a78c376b13802ed2cf1e7b65_cgraph.eps | 764 +- inst/documentation/latex/Predict_8c_c4f4e806a78c376b13802ed2cf1e7b65_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_c4f4e806a78c376b13802ed2cf1e7b65_cgraph.pdf |binary inst/documentation/latex/Predict_8c_cbb3e45d03e1b544c94bf639b191a953_cgraph.eps | 764 +- inst/documentation/latex/Predict_8c_cbb3e45d03e1b544c94bf639b191a953_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_cbb3e45d03e1b544c94bf639b191a953_cgraph.pdf |binary inst/documentation/latex/Predict_8c_d9d49b6a210f5c09a2a1d1aa496859ce_cgraph.eps | 764 +- inst/documentation/latex/Predict_8c_d9d49b6a210f5c09a2a1d1aa496859ce_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_d9d49b6a210f5c09a2a1d1aa496859ce_cgraph.pdf |binary inst/documentation/latex/Predict_8c_daf8a0eb8790ebf14f0e265de164d50e_cgraph.eps | 680 +- inst/documentation/latex/Predict_8c_daf8a0eb8790ebf14f0e265de164d50e_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_daf8a0eb8790ebf14f0e265de164d50e_cgraph.pdf |binary inst/documentation/latex/Predict_8c_dcd61d38c7c43d241d09a600b70fe3c5_cgraph.eps | 676 +- inst/documentation/latex/Predict_8c_dcd61d38c7c43d241d09a600b70fe3c5_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_dcd61d38c7c43d241d09a600b70fe3c5_cgraph.pdf |binary inst/documentation/latex/Predict_8c_dec31e3aa985e0af16ccaeac31237640_cgraph.eps | 714 +- inst/documentation/latex/Predict_8c_dec31e3aa985e0af16ccaeac31237640_cgraph.md5 | 2 inst/documentation/latex/Predict_8c_dec31e3aa985e0af16ccaeac31237640_cgraph.pdf |binary inst/documentation/latex/Predict_8h.tex | 2 inst/documentation/latex/Predict_8h__dep__incl.eps | 350 - inst/documentation/latex/Predict_8h__dep__incl.md5 | 2 inst/documentation/latex/Predict_8h__dep__incl.pdf |binary inst/documentation/latex/Predict_8h_daf8a0eb8790ebf14f0e265de164d50e_cgraph.eps | 680 +- inst/documentation/latex/Predict_8h_daf8a0eb8790ebf14f0e265de164d50e_cgraph.md5 | 2 inst/documentation/latex/Predict_8h_daf8a0eb8790ebf14f0e265de164d50e_cgraph.pdf |binary inst/documentation/latex/RandomForest_8c.tex | 2 inst/documentation/latex/RandomForest_8c_4f54420cb561055a4e545f7e1359fb87_cgraph.eps | 2969 ++++----- inst/documentation/latex/RandomForest_8c_4f54420cb561055a4e545f7e1359fb87_cgraph.md5 | 2 inst/documentation/latex/RandomForest_8c_4f54420cb561055a4e545f7e1359fb87_cgraph.pdf |binary inst/documentation/latex/RandomForest_8c__incl.eps | 498 - inst/documentation/latex/RandomForest_8c__incl.md5 | 2 inst/documentation/latex/RandomForest_8c__incl.pdf |binary inst/documentation/latex/S3Classes_8c.tex | 54 inst/documentation/latex/S3Classes_8c__incl.eps | 498 - inst/documentation/latex/S3Classes_8c__incl.md5 | 2 inst/documentation/latex/S3Classes_8c__incl.pdf |binary inst/documentation/latex/S3Classes_8h.tex | 54 inst/documentation/latex/S3Classes_8h__dep__incl.eps | 350 - inst/documentation/latex/S3Classes_8h__dep__incl.md5 | 2 inst/documentation/latex/S3Classes_8h__dep__incl.pdf |binary inst/documentation/latex/Splits_8c.tex | 8 inst/documentation/latex/Splits_8c_00d4080fae6513962bd1e54ec9d476bc_cgraph.eps | 146 inst/documentation/latex/Splits_8c_00d4080fae6513962bd1e54ec9d476bc_cgraph.md5 | 2 inst/documentation/latex/Splits_8c_00d4080fae6513962bd1e54ec9d476bc_cgraph.pdf |binary inst/documentation/latex/Splits_8c_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.eps | 200 inst/documentation/latex/Splits_8c_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.md5 | 2 inst/documentation/latex/Splits_8c_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.pdf |binary inst/documentation/latex/Splits_8c_7bda94db4217f68594d347d4498576a6_cgraph.eps | 606 - inst/documentation/latex/Splits_8c_7bda94db4217f68594d347d4498576a6_cgraph.md5 | 2 inst/documentation/latex/Splits_8c_7bda94db4217f68594d347d4498576a6_cgraph.pdf |binary inst/documentation/latex/Splits_8c_99df49df1a0061e2fe476f531285b0a3_cgraph.eps | 260 inst/documentation/latex/Splits_8c_99df49df1a0061e2fe476f531285b0a3_cgraph.md5 | 2 inst/documentation/latex/Splits_8c_99df49df1a0061e2fe476f531285b0a3_cgraph.pdf |binary inst/documentation/latex/Splits_8c__incl.eps | 498 - inst/documentation/latex/Splits_8c__incl.md5 | 2 inst/documentation/latex/Splits_8c__incl.pdf |binary inst/documentation/latex/Splits_8h.tex | 4 inst/documentation/latex/Splits_8h_00d4080fae6513962bd1e54ec9d476bc_cgraph.eps | 146 inst/documentation/latex/Splits_8h_00d4080fae6513962bd1e54ec9d476bc_cgraph.md5 | 2 inst/documentation/latex/Splits_8h_00d4080fae6513962bd1e54ec9d476bc_cgraph.pdf |binary inst/documentation/latex/Splits_8h_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.eps | 200 inst/documentation/latex/Splits_8h_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.md5 | 2 inst/documentation/latex/Splits_8h_1b9f04a865d61c1c9757ba77bff49ab7_cgraph.pdf |binary inst/documentation/latex/Splits_8h__dep__incl.eps | 350 - inst/documentation/latex/Splits_8h__dep__incl.md5 | 2 inst/documentation/latex/Splits_8h__dep__incl.pdf |binary inst/documentation/latex/SurrogateSplits_8c.tex | 6 inst/documentation/latex/SurrogateSplits_8c_378f9c4110050c0d1762c6347d53379b_cgraph.eps | 1126 +-- inst/documentation/latex/SurrogateSplits_8c_378f9c4110050c0d1762c6347d53379b_cgraph.md5 | 2 inst/documentation/latex/SurrogateSplits_8c_378f9c4110050c0d1762c6347d53379b_cgraph.pdf |binary inst/documentation/latex/SurrogateSplits_8c_6f9f8c3b4147854cacc43d67a055d911_cgraph.eps | 520 - inst/documentation/latex/SurrogateSplits_8c_6f9f8c3b4147854cacc43d67a055d911_cgraph.md5 | 2 inst/documentation/latex/SurrogateSplits_8c_6f9f8c3b4147854cacc43d67a055d911_cgraph.pdf |binary inst/documentation/latex/SurrogateSplits_8c__incl.eps | 498 - inst/documentation/latex/SurrogateSplits_8c__incl.md5 | 2 inst/documentation/latex/SurrogateSplits_8c__incl.pdf |binary inst/documentation/latex/SurrogateSplits_8c_fd8931db67339ca2bb679d8d38135275_cgraph.eps | 1068 +-- inst/documentation/latex/SurrogateSplits_8c_fd8931db67339ca2bb679d8d38135275_cgraph.md5 | 2 inst/documentation/latex/SurrogateSplits_8c_fd8931db67339ca2bb679d8d38135275_cgraph.pdf |binary inst/documentation/latex/SurrogateSplits_8h.tex | 4 inst/documentation/latex/SurrogateSplits_8h_6f9f8c3b4147854cacc43d67a055d911_cgraph.eps | 520 - inst/documentation/latex/SurrogateSplits_8h_6f9f8c3b4147854cacc43d67a055d911_cgraph.md5 | 2 inst/documentation/latex/SurrogateSplits_8h_6f9f8c3b4147854cacc43d67a055d911_cgraph.pdf |binary inst/documentation/latex/SurrogateSplits_8h__dep__incl.eps | 350 - inst/documentation/latex/SurrogateSplits_8h__dep__incl.md5 | 2 inst/documentation/latex/SurrogateSplits_8h__dep__incl.pdf |binary inst/documentation/latex/SurrogateSplits_8h_fd8931db67339ca2bb679d8d38135275_cgraph.eps | 1068 +-- inst/documentation/latex/SurrogateSplits_8h_fd8931db67339ca2bb679d8d38135275_cgraph.md5 | 2 inst/documentation/latex/SurrogateSplits_8h_fd8931db67339ca2bb679d8d38135275_cgraph.pdf |binary inst/documentation/latex/TestStatistic_8c.tex | 12 inst/documentation/latex/TestStatistic_8c_499b26b98aaf073dc66135ecde8ad851_cgraph.eps | 222 inst/documentation/latex/TestStatistic_8c_499b26b98aaf073dc66135ecde8ad851_cgraph.md5 | 2 inst/documentation/latex/TestStatistic_8c_499b26b98aaf073dc66135ecde8ad851_cgraph.pdf |binary inst/documentation/latex/TestStatistic_8c_6939f019d2c7f42ae824776043a8c704_cgraph.eps | 108 inst/documentation/latex/TestStatistic_8c_6939f019d2c7f42ae824776043a8c704_cgraph.md5 | 2 inst/documentation/latex/TestStatistic_8c_6939f019d2c7f42ae824776043a8c704_cgraph.pdf | 224 inst/documentation/latex/TestStatistic_8c_825d2b1db2c719f8d1c2e2ec3f79e1a4_cgraph.eps | 70 inst/documentation/latex/TestStatistic_8c_825d2b1db2c719f8d1c2e2ec3f79e1a4_cgraph.md5 | 2 inst/documentation/latex/TestStatistic_8c_825d2b1db2c719f8d1c2e2ec3f79e1a4_cgraph.pdf | 204 inst/documentation/latex/TestStatistic_8c__incl.eps | 498 - inst/documentation/latex/TestStatistic_8c__incl.md5 | 2 inst/documentation/latex/TestStatistic_8c__incl.pdf |binary inst/documentation/latex/TestStatistic_8c_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.eps | 184 inst/documentation/latex/TestStatistic_8c_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.md5 | 2 inst/documentation/latex/TestStatistic_8c_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.pdf |binary inst/documentation/latex/TestStatistic_8h.tex | 6 inst/documentation/latex/TestStatistic_8h__dep__incl.eps | 350 - inst/documentation/latex/TestStatistic_8h__dep__incl.md5 | 2 inst/documentation/latex/TestStatistic_8h__dep__incl.pdf |binary inst/documentation/latex/TestStatistic_8h_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.eps | 184 inst/documentation/latex/TestStatistic_8h_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.md5 | 2 inst/documentation/latex/TestStatistic_8h_a3a1f48e4bb3aa19d1bac85a53358638_cgraph.pdf |binary inst/documentation/latex/TreeGrow_8c.tex | 4 inst/documentation/latex/TreeGrow_8c_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.eps | 2942 ++++----- inst/documentation/latex/TreeGrow_8c_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.md5 | 2 inst/documentation/latex/TreeGrow_8c_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.pdf |binary inst/documentation/latex/TreeGrow_8c__incl.eps | 498 - inst/documentation/latex/TreeGrow_8c__incl.md5 | 2 inst/documentation/latex/TreeGrow_8c__incl.pdf |binary inst/documentation/latex/TreeGrow_8c_f9fe6e74563480c8eb5e4332fe9bca22_cgraph.eps | 3023 ++++----- inst/documentation/latex/TreeGrow_8c_f9fe6e74563480c8eb5e4332fe9bca22_cgraph.md5 | 2 inst/documentation/latex/TreeGrow_8c_f9fe6e74563480c8eb5e4332fe9bca22_cgraph.pdf |binary inst/documentation/latex/TreeGrow_8h.tex | 2 inst/documentation/latex/TreeGrow_8h_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.eps | 3178 +++++----- inst/documentation/latex/TreeGrow_8h_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.md5 | 2 inst/documentation/latex/TreeGrow_8h_67d352c38f59d30c7b9954bf5d3a57ad_cgraph.pdf |binary inst/documentation/latex/TreeGrow_8h__dep__incl.eps | 350 - inst/documentation/latex/TreeGrow_8h__dep__incl.md5 | 2 inst/documentation/latex/TreeGrow_8h__dep__incl.pdf |binary inst/documentation/latex/Utils_8c.tex | 66 inst/documentation/latex/Utils_8c_0d9b1b1601f9e2760200af93d21c59af_cgraph.eps | 70 inst/documentation/latex/Utils_8c_0d9b1b1601f9e2760200af93d21c59af_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_0d9b1b1601f9e2760200af93d21c59af_cgraph.pdf |binary inst/documentation/latex/Utils_8c_18acbfc80e9ea6db45a010ccf7bfeafd_cgraph.eps | 70 inst/documentation/latex/Utils_8c_18acbfc80e9ea6db45a010ccf7bfeafd_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_18acbfc80e9ea6db45a010ccf7bfeafd_cgraph.pdf |binary inst/documentation/latex/Utils_8c_2f3955eb1326f77826baad7194f6ea67_cgraph.eps | 70 inst/documentation/latex/Utils_8c_2f3955eb1326f77826baad7194f6ea67_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_2f3955eb1326f77826baad7194f6ea67_cgraph.pdf |binary inst/documentation/latex/Utils_8c_36672b428d262a38ef8d14000f92f0f5_cgraph.eps | 146 inst/documentation/latex/Utils_8c_36672b428d262a38ef8d14000f92f0f5_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_36672b428d262a38ef8d14000f92f0f5_cgraph.pdf |binary inst/documentation/latex/Utils_8c_4534205c84c2784248b60818d7c2f3d6_cgraph.eps | 108 inst/documentation/latex/Utils_8c_4534205c84c2784248b60818d7c2f3d6_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_4534205c84c2784248b60818d7c2f3d6_cgraph.pdf | 245 inst/documentation/latex/Utils_8c_74af72977c02a5b247841e52a3313ae1_cgraph.eps | 70 inst/documentation/latex/Utils_8c_74af72977c02a5b247841e52a3313ae1_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_74af72977c02a5b247841e52a3313ae1_cgraph.pdf |binary inst/documentation/latex/Utils_8c_88c1a807c7856d57d07d10027d588602_cgraph.eps | 70 inst/documentation/latex/Utils_8c_88c1a807c7856d57d07d10027d588602_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_88c1a807c7856d57d07d10027d588602_cgraph.pdf |binary inst/documentation/latex/Utils_8c_95f5ed4c75d42e2e98ed09c9c9d48ff5_cgraph.eps | 70 inst/documentation/latex/Utils_8c_95f5ed4c75d42e2e98ed09c9c9d48ff5_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_95f5ed4c75d42e2e98ed09c9c9d48ff5_cgraph.pdf |binary inst/documentation/latex/Utils_8c_9aa84c21406d338bd7116cbe9444ea3c_cgraph.eps | 238 inst/documentation/latex/Utils_8c_9aa84c21406d338bd7116cbe9444ea3c_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_9aa84c21406d338bd7116cbe9444ea3c_cgraph.pdf |binary inst/documentation/latex/Utils_8c__incl.eps | 498 - inst/documentation/latex/Utils_8c__incl.md5 | 2 inst/documentation/latex/Utils_8c__incl.pdf |binary inst/documentation/latex/Utils_8c_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.eps | 146 inst/documentation/latex/Utils_8c_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.pdf |binary inst/documentation/latex/Utils_8c_ccce6f00d55276c0a01b30651f1c206c_cgraph.eps | 164 inst/documentation/latex/Utils_8c_ccce6f00d55276c0a01b30651f1c206c_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_ccce6f00d55276c0a01b30651f1c206c_cgraph.pdf | 242 inst/documentation/latex/Utils_8c_cfdb060aa1651f62dab395e2158f982e_cgraph.eps | 188 inst/documentation/latex/Utils_8c_cfdb060aa1651f62dab395e2158f982e_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_cfdb060aa1651f62dab395e2158f982e_cgraph.pdf |binary inst/documentation/latex/Utils_8c_d104efc7b7bfd39b34f24b69608bbbf7_cgraph.eps | 4 inst/documentation/latex/Utils_8c_d104efc7b7bfd39b34f24b69608bbbf7_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_d104efc7b7bfd39b34f24b69608bbbf7_cgraph.pdf |binary inst/documentation/latex/Utils_8c_dfb2cc4acd2e6897f67e6467e241aba6_cgraph.eps | 70 inst/documentation/latex/Utils_8c_dfb2cc4acd2e6897f67e6467e241aba6_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_dfb2cc4acd2e6897f67e6467e241aba6_cgraph.pdf |binary inst/documentation/latex/Utils_8c_ea653a331bb9774d8899a25693e748c9_cgraph.eps | 146 inst/documentation/latex/Utils_8c_ea653a331bb9774d8899a25693e748c9_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_ea653a331bb9774d8899a25693e748c9_cgraph.pdf |binary inst/documentation/latex/Utils_8c_f9716d8427688ac52d3dd254337316b1_cgraph.eps | 146 inst/documentation/latex/Utils_8c_f9716d8427688ac52d3dd254337316b1_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_f9716d8427688ac52d3dd254337316b1_cgraph.pdf |binary inst/documentation/latex/Utils_8c_ff0eae9aa0175cd8fe73324707418ce0_cgraph.eps | 70 inst/documentation/latex/Utils_8c_ff0eae9aa0175cd8fe73324707418ce0_cgraph.md5 | 2 inst/documentation/latex/Utils_8c_ff0eae9aa0175cd8fe73324707418ce0_cgraph.pdf | 202 inst/documentation/latex/Utils_8h.tex | 32 inst/documentation/latex/Utils_8h_88c1a807c7856d57d07d10027d588602_cgraph.eps | 70 inst/documentation/latex/Utils_8h_88c1a807c7856d57d07d10027d588602_cgraph.md5 | 2 inst/documentation/latex/Utils_8h_88c1a807c7856d57d07d10027d588602_cgraph.pdf |binary inst/documentation/latex/Utils_8h__dep__incl.eps | 350 - inst/documentation/latex/Utils_8h__dep__incl.md5 | 2 inst/documentation/latex/Utils_8h__dep__incl.pdf |binary inst/documentation/latex/Utils_8h_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.eps | 146 inst/documentation/latex/Utils_8h_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.md5 | 2 inst/documentation/latex/Utils_8h_c0d5c2fe971923d7a1b1869dffabddb1_cgraph.pdf |binary inst/documentation/latex/Utils_8h_ccce6f00d55276c0a01b30651f1c206c_cgraph.eps | 254 inst/documentation/latex/Utils_8h_ccce6f00d55276c0a01b30651f1c206c_cgraph.md5 | 2 inst/documentation/latex/Utils_8h_ccce6f00d55276c0a01b30651f1c206c_cgraph.pdf |binary inst/documentation/latex/Utils_8h_f9716d8427688ac52d3dd254337316b1_cgraph.eps | 146 inst/documentation/latex/Utils_8h_f9716d8427688ac52d3dd254337316b1_cgraph.md5 | 2 inst/documentation/latex/Utils_8h_f9716d8427688ac52d3dd254337316b1_cgraph.pdf |binary inst/documentation/latex/Utils_8h_ff0eae9aa0175cd8fe73324707418ce0_cgraph.eps | 70 inst/documentation/latex/Utils_8h_ff0eae9aa0175cd8fe73324707418ce0_cgraph.md5 | 2 inst/documentation/latex/Utils_8h_ff0eae9aa0175cd8fe73324707418ce0_cgraph.pdf | 202 inst/documentation/latex/dir_6c30642956b040afcd6ed9c9ec492c91_dep.eps | 4 inst/documentation/latex/dir_6c30642956b040afcd6ed9c9ec492c91_dep.pdf | 178 inst/documentation/latex/doxygen.sty | 12 inst/documentation/latex/mvt_8f.tex | 473 + inst/documentation/latex/mvt_8f_01b86430a337d3d8b91bcf9346d7dd3b_cgraph.eps |only inst/documentation/latex/mvt_8f_01b86430a337d3d8b91bcf9346d7dd3b_cgraph.md5 |only inst/documentation/latex/mvt_8f_01b86430a337d3d8b91bcf9346d7dd3b_cgraph.pdf |only inst/documentation/latex/mvt_8f_151b69372f580727b65189d3ba4c08e4_cgraph.eps |only inst/documentation/latex/mvt_8f_151b69372f580727b65189d3ba4c08e4_cgraph.md5 |only inst/documentation/latex/mvt_8f_151b69372f580727b65189d3ba4c08e4_cgraph.pdf |only inst/documentation/latex/mvt_8f_1ab822a6524a9096bf2ec00253f890e3_cgraph.eps |only inst/documentation/latex/mvt_8f_1ab822a6524a9096bf2ec00253f890e3_cgraph.md5 |only inst/documentation/latex/mvt_8f_1ab822a6524a9096bf2ec00253f890e3_cgraph.pdf |only inst/documentation/latex/mvt_8f_1e3a3eb63d17fe37f686fc1f571beccc_cgraph.eps |only inst/documentation/latex/mvt_8f_1e3a3eb63d17fe37f686fc1f571beccc_cgraph.md5 |only inst/documentation/latex/mvt_8f_1e3a3eb63d17fe37f686fc1f571beccc_cgraph.pdf |only inst/documentation/latex/mvt_8f_33d5a1ab44132a99ec34a2a0c899cdcb_cgraph.eps |only inst/documentation/latex/mvt_8f_33d5a1ab44132a99ec34a2a0c899cdcb_cgraph.md5 |only inst/documentation/latex/mvt_8f_33d5a1ab44132a99ec34a2a0c899cdcb_cgraph.pdf |only inst/documentation/latex/mvt_8f_3652f2cb737bf864d78fff1a650ca287_cgraph.eps |only inst/documentation/latex/mvt_8f_3652f2cb737bf864d78fff1a650ca287_cgraph.md5 |only inst/documentation/latex/mvt_8f_3652f2cb737bf864d78fff1a650ca287_cgraph.pdf |only inst/documentation/latex/mvt_8f_4b51e2fd2b5378c70a36771ac4cfed04_cgraph.eps |only inst/documentation/latex/mvt_8f_4b51e2fd2b5378c70a36771ac4cfed04_cgraph.md5 |only inst/documentation/latex/mvt_8f_4b51e2fd2b5378c70a36771ac4cfed04_cgraph.pdf |only inst/documentation/latex/mvt_8f_53a2e447659c04eb0ad551cf58c77d37_cgraph.eps |only inst/documentation/latex/mvt_8f_53a2e447659c04eb0ad551cf58c77d37_cgraph.md5 |only inst/documentation/latex/mvt_8f_53a2e447659c04eb0ad551cf58c77d37_cgraph.pdf |only inst/documentation/latex/mvt_8f_5411cfeafe20ca2bd17c962f8c8c0e84_cgraph.eps |only inst/documentation/latex/mvt_8f_5411cfeafe20ca2bd17c962f8c8c0e84_cgraph.md5 |only inst/documentation/latex/mvt_8f_5411cfeafe20ca2bd17c962f8c8c0e84_cgraph.pdf |only inst/documentation/latex/mvt_8f_597ed59b5410765b8afcc6527c9552e7_cgraph.eps |only inst/documentation/latex/mvt_8f_597ed59b5410765b8afcc6527c9552e7_cgraph.md5 |only inst/documentation/latex/mvt_8f_597ed59b5410765b8afcc6527c9552e7_cgraph.pdf |only inst/documentation/latex/mvt_8f_6b32b1cb4d3243c9ffef2622d8cfa65d_cgraph.eps |only inst/documentation/latex/mvt_8f_6b32b1cb4d3243c9ffef2622d8cfa65d_cgraph.md5 |only inst/documentation/latex/mvt_8f_6b32b1cb4d3243c9ffef2622d8cfa65d_cgraph.pdf |only inst/documentation/latex/mvt_8f_7319671edcfbb7bd0e50690518e644fc_cgraph.eps |only inst/documentation/latex/mvt_8f_7319671edcfbb7bd0e50690518e644fc_cgraph.md5 |only inst/documentation/latex/mvt_8f_7319671edcfbb7bd0e50690518e644fc_cgraph.pdf |only inst/documentation/latex/mvt_8f_81b566eaa4178de04b31e15475cde3bf_cgraph.eps |only inst/documentation/latex/mvt_8f_81b566eaa4178de04b31e15475cde3bf_cgraph.md5 |only inst/documentation/latex/mvt_8f_81b566eaa4178de04b31e15475cde3bf_cgraph.pdf |only inst/documentation/latex/mvt_8f_9d0fae33894aee91124b4f3695494f7e_cgraph.eps |only inst/documentation/latex/mvt_8f_9d0fae33894aee91124b4f3695494f7e_cgraph.md5 |only inst/documentation/latex/mvt_8f_9d0fae33894aee91124b4f3695494f7e_cgraph.pdf |only inst/documentation/latex/mvt_8f_ae28c99f4b4ff2300cfa96ffa62bf799_cgraph.eps |only inst/documentation/latex/mvt_8f_ae28c99f4b4ff2300cfa96ffa62bf799_cgraph.md5 |only inst/documentation/latex/mvt_8f_ae28c99f4b4ff2300cfa96ffa62bf799_cgraph.pdf |only inst/documentation/latex/mvt_8f_cb964c59585b62348fb9653f052c669e_cgraph.eps |only inst/documentation/latex/mvt_8f_cb964c59585b62348fb9653f052c669e_cgraph.md5 |only inst/documentation/latex/mvt_8f_cb964c59585b62348fb9653f052c669e_cgraph.pdf |only inst/documentation/latex/mvt_8f_e6a30b16d74f1c585c70de45080c0805_cgraph.eps |only inst/documentation/latex/mvt_8f_e6a30b16d74f1c585c70de45080c0805_cgraph.md5 |only inst/documentation/latex/mvt_8f_e6a30b16d74f1c585c70de45080c0805_cgraph.pdf |only inst/documentation/latex/mvt_8h.tex | 2 inst/documentation/latex/mvt_8h__dep__incl.eps | 350 - inst/documentation/latex/mvt_8h__dep__incl.md5 | 2 inst/documentation/latex/mvt_8h__dep__incl.pdf |binary inst/documentation/latex/party_8h.tex | 58 inst/documentation/latex/party_8h__dep__incl.eps | 334 - inst/documentation/latex/party_8h__dep__incl.md5 | 2 inst/documentation/latex/party_8h__dep__incl.pdf |binary inst/documentation/latex/party_8h__incl.eps | 470 - inst/documentation/latex/party_8h__incl.md5 | 2 inst/documentation/latex/party_8h__incl.pdf |binary inst/documentation/latex/refman.tex | 4 inst/documentation/man/man3/Classes.c.3 | 6 inst/documentation/man/man3/Classes.h.3 | 6 inst/documentation/man/man3/Convenience.c.3 | 2 inst/documentation/man/man3/Convenience.h.3 | 2 inst/documentation/man/man3/Distributions.c.3 | 2 inst/documentation/man/man3/Distributions.h.3 | 2 inst/documentation/man/man3/IndependenceTest.c.3 | 12 inst/documentation/man/man3/IndependenceTest.h.3 | 10 inst/documentation/man/man3/LinearStatistic.c.3 | 2 inst/documentation/man/man3/LinearStatistic.h.3 | 2 inst/documentation/man/man3/Node.c.3 | 12 inst/documentation/man/man3/Node.h.3 | 10 inst/documentation/man/man3/Predict.c.3 | 2 inst/documentation/man/man3/Predict.h.3 | 2 inst/documentation/man/man3/RandomForest.c.3 | 2 inst/documentation/man/man3/S3Classes.c.3 | 2 inst/documentation/man/man3/S3Classes.h.3 | 2 inst/documentation/man/man3/Splits.c.3 | 2 inst/documentation/man/man3/Splits.h.3 | 2 inst/documentation/man/man3/SurrogateSplits.c.3 | 2 inst/documentation/man/man3/SurrogateSplits.h.3 | 2 inst/documentation/man/man3/TestStatistic.c.3 | 2 inst/documentation/man/man3/TestStatistic.h.3 | 2 inst/documentation/man/man3/TreeGrow.c.3 | 2 inst/documentation/man/man3/TreeGrow.h.3 | 2 inst/documentation/man/man3/Utils.c.3 | 4 inst/documentation/man/man3/Utils.h.3 | 2 inst/documentation/man/man3/_home_hothorn_projects_svn_Rpkgs_trunk_party_src_.3 | 5 inst/documentation/man/man3/mvt.f.3 | 212 inst/documentation/man/man3/mvt.h.3 | 2 inst/documentation/man/man3/party.h.3 | 2 inst/documentation/man/man3/todo.3 | 2 src/Classes.c | 6 src/Classes.h | 2 src/IndependenceTest.c | 18 src/IndependenceTest.h | 2 src/Node.c | 9 src/Node.h | 2 src/SurrogateSplits.c | 4 src/TreeGrow.c | 6 1063 files changed, 39727 insertions(+), 36483 deletions(-)
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Object orientated implementation of distributions
Description: Object orientated implementation of distributions
Diff between distr versions 2.1 dated 2009-04-15 and 2.1.1 dated 2009-06-17
DESCRIPTION | 8 ++-- R/internalUtils.R | 1 inst/doc/.build.timestamp |only inst/doc/Rplots.pdf | 64 ++++++++++++++++---------------- inst/doc/newDistributions-AbscDist.eps |only inst/doc/newDistributions-AbscDist.pdf |only inst/doc/newDistributions-DiscrDist.eps |only inst/doc/newDistributions-DiscrDist.pdf |only inst/doc/newDistributions-exam1.eps |only inst/doc/newDistributions-exam1.pdf |only inst/doc/newDistributions.pdf |binary inst/doc/newDistributions.tex |only man/Unif-class.Rd | 20 +++++++--- 13 files changed, 51 insertions(+), 42 deletions(-)
Author: Karline Soetaert
Diff between diagram versions 1.3.1 dated 2009-02-20 and 1.4 dated 2009-06-17
Title: Functions for visualising simple graphs (networks), plotting
flow diagrams
Description: Visualises simple graphs (networks) based on a transition
matrix, utilities to plot flow diagrams, visualising webs,...
Support for the book "A practical guide to ecological modelling
- using R as a simulation platform" by Karline Soetaert and
Peter M.J. Herman (2009). Springer. Includes demo(flowchart),
demo(plotmat), demo(plotweb)
diagram-1.3.1/diagram/R/diagram.r |only
diagram-1.4/diagram/DESCRIPTION | 38
diagram-1.4/diagram/R/bentarrow.R |only
diagram-1.4/diagram/R/coordinates.R |only
diagram-1.4/diagram/R/curvedarrow.R |only
diagram-1.4/diagram/R/openplotmat.R |only
diagram-1.4/diagram/R/plotmat.R |only
diagram-1.4/diagram/R/plotweb.R |only
diagram-1.4/diagram/R/segmentarrow.R |only
diagram-1.4/diagram/R/selfarrow.R |only
diagram-1.4/diagram/R/shadowbox.R |only
diagram-1.4/diagram/R/splitarrow.R |only
diagram-1.4/diagram/R/straightarrow.R |only
diagram-1.4/diagram/R/textdiamond.R |only
diagram-1.4/diagram/R/textellipse.R |only
diagram-1.4/diagram/R/textempty.R |only
diagram-1.4/diagram/R/texthexa.R |only
diagram-1.4/diagram/R/textmulti.R |only
diagram-1.4/diagram/R/textplain.R |only
diagram-1.4/diagram/R/textrect.R |only
diagram-1.4/diagram/R/textround.R |only
diagram-1.4/diagram/R/treearrow.R |only
diagram-1.4/diagram/demo/plotmat.r | 2
diagram-1.4/diagram/inst/doc/diagram.Rnw | 91 -
diagram-1.4/diagram/inst/doc/diagram.pdf | 2208 ++++++++++++++---------------
diagram-1.4/diagram/inst/doc/vignettes.bib | 41
diagram-1.4/diagram/man/Rigaweb.Rd | 71
diagram-1.4/diagram/man/Takapotoweb.Rd | 75
diagram-1.4/diagram/man/Teasel.Rd | 63
diagram-1.4/diagram/man/bentarrow.Rd | 97 -
diagram-1.4/diagram/man/coordinates.Rd | 83 -
diagram-1.4/diagram/man/curvedarrow.Rd | 109 -
diagram-1.4/diagram/man/diagram.Rd | 36
diagram-1.4/diagram/man/openplotmat.Rd | 28
diagram-1.4/diagram/man/plotmat.Rd | 358 +++-
diagram-1.4/diagram/man/plotweb.Rd | 194 +-
diagram-1.4/diagram/man/segmentarrow.Rd | 120 +
diagram-1.4/diagram/man/selfarrow.Rd | 89 -
diagram-1.4/diagram/man/shadowbox.Rd | 105 -
diagram-1.4/diagram/man/splitarrow.Rd | 116 +
diagram-1.4/diagram/man/straightarrow.Rd | 82 -
diagram-1.4/diagram/man/textdiamond.Rd | 78 -
diagram-1.4/diagram/man/textellipse.Rd | 81 -
diagram-1.4/diagram/man/textempty.Rd | 49
diagram-1.4/diagram/man/texthexa.Rd | 78 -
diagram-1.4/diagram/man/textmulti.Rd | 77 -
diagram-1.4/diagram/man/textplain.Rd | 50
diagram-1.4/diagram/man/textrect.Rd | 73
diagram-1.4/diagram/man/textround.Rd | 79 -
diagram-1.4/diagram/man/treearrow.Rd | 121 +
50 files changed, 2844 insertions(+), 1848 deletions(-)
Author: Jussi Klemela
Diff between delt versions 0.7.0 dated 2008-02-29 and 0.8.0 dated 2009-06-17
Title: Estimation of multivariate densities with adaptive histograms
Description: The package implements methods for estimating multivariate
densities: adaptive histograms (greedy histograms and
CART-histograms), stagewise minimization, and bootstrap
aggregation are included in the package.
delt-0.7.0/delt/R/crosvali.R |only
delt-0.7.0/delt/R/dentseq.R |only
delt-0.7.0/delt/R/modetreeD.R |only
delt-0.7.0/delt/R/omaindmat.R |only
delt-0.7.0/delt/R/profaah.R |only
delt-0.7.0/delt/R/profavah.R |only
delt-0.7.0/delt/R/prunecv.R |only
delt-0.8.0/delt/DESCRIPTION | 22 +++++++++++-----------
delt-0.8.0/delt/R/allocolo.R | 15 ++++++++-------
delt-0.8.0/delt/R/denmean.R | 11 ++++++-----
delt-0.8.0/delt/R/densplitF.R | 11 +++++------
delt-0.8.0/delt/R/densplitR.R | 31 ++++++++++++++++---------------
delt-0.8.0/delt/R/findsplit.R | 11 ++++++-----
delt-0.8.0/delt/R/plotparti.R | 7 ++++---
delt-0.8.0/delt/man/delt-package.Rd | 8 ++++----
delt-0.8.0/delt/man/plotparti.Rd | 3 ++-
16 files changed, 62 insertions(+), 57 deletions(-)
Author: Bill Venables
Title: Construction of factorial designs
Description: This small library contains a series of simple tools for
constructing and manipulating confounded and fractional
factorial designs.
Diff between conf.design versions 0.0-4 dated 2005-04-08 and 1.0 dated 2009-06-17
conf.design-0.0-4/conf.design/INDEX |only conf.design-0.0-4/conf.design/README.design |only conf.design-1.0/conf.design/DESCRIPTION | 24 ++++++++++++------------ conf.design-1.0/conf.design/LICENSE |only conf.design-1.0/conf.design/inst |only 5 files changed, 12 insertions(+), 12 deletions(-)
Author: Marc Schwartz
Diff between WriteXLS versions 1.7.1 dated 2009-05-29 and 1.8.0 dated 2009-06-17
Title: Cross-platform Perl based R function to create Excel 2003 (XLS)
files
Description: Cross-platform perl based R function to create Excel (XLS)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it
contains or can be specified by the user.
DESCRIPTION | 10 +++++-----
R/WriteXLS.R | 14 ++++++++++++--
inst/Perl/WriteXLS.pl | 15 +++++++++++----
man/WriteXLS.Rd | 10 +++++++---
4 files changed, 35 insertions(+), 14 deletions(-)
Author: Washington Junger
Diff between pgam versions 0.4.8 dated 2007-12-18 and 0.4.9 dated 2009-06-17
Title: Poisson-Gamma Additive Models.
Description: This work is an extension of the state space model for
Poisson count data, Poisson-Gamma model, towards a
semiparametric specification. Just like the generalized
additive models (GAM), cubic splines are used for covariate
smoothing. The semiparametric models are fitted by an iterative
process that combines maximization of likelihood and
backfitting algorithm.
pgam-0.4.8/pgam/src/Makevars |only
pgam-0.4.9/pgam/DESCRIPTION | 23 ++++++++++++++++-------
pgam-0.4.9/pgam/R/pgam.r | 6 +++---
pgam-0.4.9/pgam/R/zzz.r | 11 ++++++-----
pgam-0.4.9/pgam/man/AIC.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/aihrio.Rd | 2 +-
pgam-0.4.9/pgam/man/backfitting.Rd | 2 +-
pgam-0.4.9/pgam/man/bksmooth.Rd | 2 +-
pgam-0.4.9/pgam/man/coef.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/deviance.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/envelope.Rd | 1 -
pgam-0.4.9/pgam/man/fitted.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/g.Rd | 2 +-
pgam-0.4.9/pgam/man/logLik.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/pgam.filter.Rd | 2 +-
pgam-0.4.9/pgam/man/pgam.fit.Rd | 2 +-
pgam-0.4.9/pgam/man/pgam.likelihood.Rd | 2 +-
pgam-0.4.9/pgam/man/predict.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/residuals.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/summary.pgam.Rd | 2 +-
21 files changed, 41 insertions(+), 32 deletions(-)
Author: Dai Feng and Luke Tierney
Title: Miscellaneous 3D Plots
Description: A collection of miscellaneous 3d plots, including
isosurfaces.
Diff between misc3d versions 0.6-1 dated 2008-05-28 and 0.6-3 dated 2009-06-17
DESCRIPTION | 8 ++++-- NAMESPACE | 2 - R/image3d.R | 4 +-- R/slices3d.R | 68 +++++++++++++++++++++++++++++++++++++++++++++---------- R/triangles.R | 13 +++++----- inst |only man/slices3d.Rd | 35 +++++++++++++++++++++------- man/triangles.Rd | 6 ++++ 8 files changed, 103 insertions(+), 33 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.07-4 dated 2009-06-14 and 0.08-01 dated 2009-06-17
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 13 +++++++++++++
DESCRIPTION | 6 +++---
R/AllInternal.R | 18 ++++++++++++++----
R/mi.R | 24 +++++++++++++++++++++---
R/mi.binary.R | 14 ++++++++++----
R/mi.continuous.R | 11 +++++++++--
R/mi.count.R | 33 +++++++++++++++++++++++----------
R/mi.info.R | 27 +++++++++++++--------------
R/mi.polr.R | 5 ++++-
R/mi.pooled.R | 9 ++++++---
man/mi.Rd | 3 +--
man/mi.binary.Rd | 6 +++---
man/mi.continuous.Rd | 2 +-
man/mi.count.Rd | 2 +-
14 files changed, 122 insertions(+), 51 deletions(-)
Author: Peter Solymos
Title: Multivariate Data Handling in Ecology and Biogeography
Description: A framework package aimed to provide standardized
computational environment for specialist work via object
classes to represent the data coded by samples, taxa and
segments (i.e. subpopulations, repeated measures). It supports
easy processing of the data along with cross tabulation and
relational data tables for samples and taxa. An object of class
`mefa' is a project specific compendium of the data and can be
easily used in further analyses. Methods are provided for
extraction, aggregation, conversion, plotting, summary and
reporting of `mefa' objects. Reports can be generated in plain
text or LaTeX format. Vignette contains worked examples.
Diff between mefa versions 3.0-1 dated 2009-05-04 and 3.1-0 dated 2009-06-17
DESCRIPTION | 10 +++++----- R/as.data.frame.dist.R |only R/as.data.frame.mefa.R | 1 + R/cdrop.R |only R/dist2vec.R |only R/extract.mefa.R | 4 ++++ R/is.dist.R |only R/mat2list.R |only R/mfill.R |only R/rdrop.R |only R/report.mefa.R | 12 +++++------- R/vec2dist.R |only inst/ChangeLog | 25 ++++++++++++++++++++++++- inst/doc/mefa.pdf |binary man/aggregate.mefa.Rd | 6 +++--- man/as.mefa.Rd | 6 +++--- man/dist2vec.Rd |only man/dolina.Rd | 10 +++++----- man/fill.na.Rd | 6 +++--- man/inflate.Rd | 6 +++--- man/label.Rd | 6 +++--- man/mat2list.Rd |only man/mefa.Rd | 6 +++--- man/mefaCheck.Rd | 6 +++--- man/mefaCrosstab.Rd | 6 +++--- man/mefaNestedless.Rd | 6 +++--- man/mefaTables.Rd | 6 +++--- man/mefadocs.Rd | 2 +- man/mefalogo.Rd | 6 +++--- man/mefaweb.Rd | 6 +++--- man/melt.mefa.Rd | 6 +++--- man/plot.mefa.Rd | 6 +++--- man/qvector.Rd | 6 +++--- man/report.mefa.Rd | 12 ++++++------ man/stcs.Rd | 6 +++--- 35 files changed, 99 insertions(+), 73 deletions(-)
Author: Andy Bunn
Title: Dendrochronology Program Library in R
Description: This package contains functions for performing some
standard tree-ring analyses.
Diff between dplR versions 1.1.8 dated 2009-03-24 and 1.1.9 dated 2009-06-17
DESCRIPTION | 6 +++--- R/read.rwl.R | 15 +++++++++++---- man/read.rwl.Rd | 6 +++++- 3 files changed, 19 insertions(+), 8 deletions(-)
Author: Nardini, C. and Liu, Y-H.
Title: Performance of N-ary classification testing
Description: Evaluate the performance of classifying
Diff between Multiclasstesting versions 1.0.0 dated 2009-04-23 and 1.2.0 dated 2009-06-17
Multiclasstesting-1.0.0/Multiclasstesting/inst/doc/NclasstestViggnette.Rnw |only Multiclasstesting-1.0.0/Multiclasstesting/inst/doc/NclasstestViggnette.pdf |only Multiclasstesting-1.0.0/Multiclasstesting/inst/doc/NclasstestViggnette.tex |only Multiclasstesting-1.2.0/Multiclasstesting/DESCRIPTION | 8 - Multiclasstesting-1.2.0/Multiclasstesting/R/Nclasstest.R | 23 ++++- Multiclasstesting-1.2.0/Multiclasstesting/inst/doc/NclasstestVignette.Rnw |only Multiclasstesting-1.2.0/Multiclasstesting/inst/doc/NclasstestVignette.pdf |only Multiclasstesting-1.2.0/Multiclasstesting/man/Multiclasstesting-package.Rd | 6 - Multiclasstesting-1.2.0/Multiclasstesting/man/Nclasstest.Rd | 41 ++++++---- 9 files changed, 49 insertions(+), 29 deletions(-)
More information about Multiclasstesting at CRAN
Permanent link
Author: Andrew O. Finley
Diff between MBA versions 0.0-5 dated 2009-03-05 and 0.0-6 dated 2009-06-17
Title: Multilevel B-spline Approximation
Description: Scattered data interpolation with Multilevel B-Splines
DESCRIPTION | 9
configure | 3242 ++++++++++++++++++++++++++++++++++--------------------------
2 files changed, 1896 insertions(+), 1355 deletions(-)
Author: Dimitris Rizopoulos
Diff between JM versions 0.2-2 dated 2008-12-15 and 0.3-0 dated 2009-06-17
Title: Joint Modelling of Longitudinal and Survival Data
Description: Shared parameter models for the joint modelling of
longitudinal and time-to-event data.
JM-0.2-2/JM/R/weibullGH.fit.R |only
JM-0.3-0/JM/DESCRIPTION | 29 ++---
JM-0.3-0/JM/R/HessLongPH.R | 2
JM-0.3-0/JM/R/HessSurvPH.R | 2
JM-0.3-0/JM/R/LogLik.chGH.R | 2
JM-0.3-0/JM/R/LogLik.chLaplace.R | 2
JM-0.3-0/JM/R/LogLik.phGH.R | 26 ++--
JM-0.3-0/JM/R/LogLik.piecewiseGH.R |only
JM-0.3-0/JM/R/LogLik.weibullAFTGH.R |only
JM-0.3-0/JM/R/LogLik.weibullGH.R | 15 +-
JM-0.3-0/JM/R/MI.fixed.times.R | 13 +-
JM-0.3-0/JM/R/MI.random.times.R | 14 +-
JM-0.3-0/JM/R/SclongCH.R | 2
JM-0.3-0/JM/R/Score.chGH.R | 2
JM-0.3-0/JM/R/Score.chLaplace.R | 2
JM-0.3-0/JM/R/Score.phGH.R | 62 ++++++----
JM-0.3-0/JM/R/Score.piecewiseGH.R |only
JM-0.3-0/JM/R/Score.weibullAFTGH.R |only
JM-0.3-0/JM/R/Score.weibullGH.R | 35 ++++--
JM-0.3-0/JM/R/ScsurvCH.R | 2
JM-0.3-0/JM/R/anova.jointModel.R | 4
JM-0.3-0/JM/R/cd.vec.R | 2
JM-0.3-0/JM/R/chGH.fit.R | 2
JM-0.3-0/JM/R/chLaplace.fit.R | 2
JM-0.3-0/JM/R/chol.transf.R | 2
JM-0.3-0/JM/R/coef.flexCPH.R | 2
JM-0.3-0/JM/R/coef.jointModel.R | 7 -
JM-0.3-0/JM/R/coef.weibull.frailty.R | 2
JM-0.3-0/JM/R/deriv.D.R | 2
JM-0.3-0/JM/R/dmvnorm.R | 2
JM-0.3-0/JM/R/dmvt.R | 2
JM-0.3-0/JM/R/fd.vec.R | 2
JM-0.3-0/JM/R/fitted.jointModel.R | 95 ++++++++++++++--
JM-0.3-0/JM/R/fixef.jointModel.R | 7 -
JM-0.3-0/JM/R/flexCPH.R | 2
JM-0.3-0/JM/R/flexCPH.fit.R | 2
JM-0.3-0/JM/R/fn.b.R | 2
JM-0.3-0/JM/R/gauher.R | 2
JM-0.3-0/JM/R/gaussKronrod.R |only
JM-0.3-0/JM/R/gr.b.R | 2
JM-0.3-0/JM/R/gr.longAFTWB.R |only
JM-0.3-0/JM/R/gr.longCH.R | 2
JM-0.3-0/JM/R/gr.longPC.R |only
JM-0.3-0/JM/R/gr.longPH.R | 27 +++-
JM-0.3-0/JM/R/gr.longWB.R | 19 ++-
JM-0.3-0/JM/R/gr.survAFTWB.R |only
JM-0.3-0/JM/R/gr.survCH.R | 2
JM-0.3-0/JM/R/gr.survPC.R |only
JM-0.3-0/JM/R/gr.survPH.R | 32 +++--
JM-0.3-0/JM/R/gr.survWB.R | 19 +--
JM-0.3-0/JM/R/initial.surv.R | 51 +++++++--
JM-0.3-0/JM/R/jacobian.R | 2
JM-0.3-0/JM/R/jacobian2.R | 2
JM-0.3-0/JM/R/jointModel.R | 120 ++++++++++++++++-----
JM-0.3-0/JM/R/logLik.flexCPH.R | 2
JM-0.3-0/JM/R/logLik.jointModel.R | 2
JM-0.3-0/JM/R/logLik.weibull.frailty.R | 2
JM-0.3-0/JM/R/logsurvCH.R | 2
JM-0.3-0/JM/R/nearPD.R | 2
JM-0.3-0/JM/R/opt.longAFTWB.R |only
JM-0.3-0/JM/R/opt.longPC.R |only
JM-0.3-0/JM/R/opt.longPH.R |only
JM-0.3-0/JM/R/opt.longWB.R | 10 +
JM-0.3-0/JM/R/opt.survAFTWB.R |only
JM-0.3-0/JM/R/opt.survCH.R | 2
JM-0.3-0/JM/R/opt.survPC.R |only
JM-0.3-0/JM/R/opt.survPH.R | 27 ++--
JM-0.3-0/JM/R/opt.survWB.R | 13 +-
JM-0.3-0/JM/R/phGH.fit.R | 143 ++++++++++++++-----------
JM-0.3-0/JM/R/piecewiseAFTGH.fit.R |only
JM-0.3-0/JM/R/piecewisePHGH.fit.R |only
JM-0.3-0/JM/R/plot.flexCPH.R | 2
JM-0.3-0/JM/R/plot.jointModel.R | 147 ++++++++++++++++++++------
JM-0.3-0/JM/R/posterior.b.R | 33 ++++-
JM-0.3-0/JM/R/predict.b.R | 2
JM-0.3-0/JM/R/predict.jointModel.R | 2
JM-0.3-0/JM/R/print.aov.jointModel.R | 2
JM-0.3-0/JM/R/print.flexCPH.R | 2
JM-0.3-0/JM/R/print.jointModel.R | 4
JM-0.3-0/JM/R/print.summary.flexCPH.R | 2
JM-0.3-0/JM/R/print.summary.jointModel.R | 20 ++-
JM-0.3-0/JM/R/print.summary.weibull.frailty.R | 2
JM-0.3-0/JM/R/print.weibull.frailty.R | 2
JM-0.3-0/JM/R/ranef.jointModel.R | 2
JM-0.3-0/JM/R/residuals.jointModel.R | 27 ++--
JM-0.3-0/JM/R/rmvt.R | 2
JM-0.3-0/JM/R/summary.flexCPH.R | 2
JM-0.3-0/JM/R/summary.jointModel.R | 13 +-
JM-0.3-0/JM/R/summary.weibull.frailty.R | 2
JM-0.3-0/JM/R/update.bCH.R | 2
JM-0.3-0/JM/R/vcov.flexCPH.R | 2
JM-0.3-0/JM/R/vcov.jointModel.R | 2
JM-0.3-0/JM/R/vcov.weibull.frailty.R | 2
JM-0.3-0/JM/R/weibull.frailty.R | 2
JM-0.3-0/JM/R/weibull.frailty.fit.R | 2
JM-0.3-0/JM/R/weibullAFTGH.fit.R |only
JM-0.3-0/JM/R/weibullPHGH.fit.R |only
JM-0.3-0/JM/data/aids.id.rda |binary
JM-0.3-0/JM/data/aids.rda |binary
JM-0.3-0/JM/data/pbc2.id.rda |binary
JM-0.3-0/JM/data/pbc2.rda |binary
JM-0.3-0/JM/data/prothro.rda |only
JM-0.3-0/JM/data/prothros.rda |only
JM-0.3-0/JM/inst/NEWS | 11 +
JM-0.3-0/JM/man/JM.Rd | 21 ++-
JM-0.3-0/JM/man/jointModel.Rd | 61 +++++-----
JM-0.3-0/JM/man/prothro.Rd |only
JM-0.3-0/JM/man/residuals.Rd | 6 -
108 files changed, 820 insertions(+), 393 deletions(-)
Author: Nandita Mukhopadhyay
Diff between nplplot versions 4.2 dated 2009-04-16 and 4.3 dated 2009-06-16
Title: Plotting non-parametric linkage results
Description: nplplot: Plots curves for non parametric linkage results
contained within a file or a table; nplplot.multi: wrapper
function for nplplot to graph multiple plot-data files, and
save these in PDF or postscript format; nplplot.old: the old
nplplot function that combined nplplot and nplplot.multi into
one function, please use the other two functions instead.
DESCRIPTION | 25 -
INDEX | 11
R/bedplot.R |only
R/genomeplot.R |only
R/nplplot.R | 752 ++++++++++++++++++++++++++++++------------------
R/nplplot.multi.R |only
R/nplplot.old.R |only
R/prepareplot.R |only
data |only
man/bedplot.Rd |only
man/genomeplot.Rd |only
man/lods1.Rd |only
man/lods2.Rd |only
man/nplplot-internal.Rd |only
man/nplplot.Rd | 255 ++++++++--------
man/nplplot.multi.Rd |only
man/nplplot.old.Rd |only
man/prepareplot.Rd |only
tests/Rallegro.07.R | 2
19 files changed, 629 insertions(+), 416 deletions(-)
Author: Giovanni Petris
Diff between dlm versions 1.0-1 dated 2009-05-27 and 1.0-2 dated 2009-06-16
Title: Bayesian and Likelihood Analysis of Dynamic Linear Models
Description: Maximum likelihood, Kalman filtering and smoothing, and
Bayesian analysis of Normal linear State Space models, also
known as Dynamic Linear Models
DESCRIPTION | 8 ++++----
R/DLM.R | 2 +-
inst/doc/dlm.pdf |binary
man/dlmGibbsDIG.Rd | 16 ++++++++--------
4 files changed, 13 insertions(+), 13 deletions(-)
Author: John Fox
Title: R Commander Plug-in for the survival Package
Description: This package provides an R Commander plug-in for the
survival package, with dialogs for Cox models, parametric
survival regression models, estimation of survival curves, and
testing for differences in survival curves, along with
data-management facilities and a variety of tests, diagnostics
and graphs.
Diff between RcmdrPlugin.survival versions 0.7-3 dated 2009-04-26 and 0.7-4 dated 2009-06-16
DESCRIPTION | 10 +++++----- inst/CHANGES | 4 ++++ inst/po/es |only man/RcmdrPlugin.survival-package.Rd | 4 ++-- po/R-es.po |only 5 files changed, 11 insertions(+), 7 deletions(-)
More information about RcmdrPlugin.survival at CRAN
Permanent link
Author: Mathieu Vrac
Diff between CDFt versions 1.0 dated 2009-06-02 and 1.0.1 dated 2009-06-16
Title: Statistical downscaling through CDF-transform
Description: This package proposes a statistical downscaling method for
cumulative distribution functions (CDF), as well as the
computation of the Cram\`er-von Mises statistics U, and the
Kolmogorov-Smirnov statistics KS.
DESCRIPTION | 6 +++---
R/CramerVonMisesTwoSamples.R | 3 ++-
2 files changed, 5 insertions(+), 4 deletions(-)
Author: Fortran code by R. J. Renka. R functions by Albrecht Gebhardt
Diff between tripack versions 1.3-2 dated 2009-06-14 and 1.3-3 dated 2009-06-16
Title: Triangulation of irregularly spaced data
Description: A constrained two-dimensional Delaunay triangulation
package
tripack-1.3-2/tripack/src/awvor.f |only
tripack-1.3-2/tripack/src/func.f |only
tripack-1.3-3/tripack/ChangeLog | 15 ++++++-------
tripack-1.3-3/tripack/DESCRIPTION | 8 +++---
tripack-1.3-3/tripack/man/triangles.Rd | 2 -
tripack-1.3-3/tripack/man/tritest.Rd | 2 -
tripack-1.3-3/tripack/src/init.c | 38 ++++++++++++++++-----------------
tripack-1.3-3/tripack/work |only
8 files changed, 33 insertions(+), 32 deletions(-)
Author: Jon Clayden
Diff between tractor.base versions 1.0.5 dated 2009-05-14 and 1.1.0 dated 2009-06-16
Title: Basic functions for the TractoR (tractography with R) bundle
Description: The tractor.base package consists of functions for working
with magnetic resonance images. It can read and write image
files stored in Analyze, NIfTI and DICOM formats (DICOM support
is read only), generate images for use as regions of interest,
and manipulate and visualise images.
DESCRIPTION | 8 +--
R/dicom.R | 12 +++++
R/misc.R | 92 ---------------------------------------------
R/output.R |only
man/datatypes.Rd | 2
man/info.neighbourhood.Rd | 2
man/newMriImageFromFile.Rd | 2
7 files changed, 18 insertions(+), 100 deletions(-)
Author: Tore Opsahl
Title: tnet: Software for Analysis of Weighted, Two-mode, and
Longitudinal networks
Description: R package to analyse weighted, two-mode, and longitudinal
networks.
Diff between tnet versions 0.0.6 dated 2009-06-03 and 0.1.0 dated 2009-06-16
tnet-0.0.6/tnet/R/weighted_richclub.R |only tnet-0.0.6/tnet/data/Freeman_EIES_3.Sym_sum.rdata |only tnet-0.0.6/tnet/data/clustering_sample1.rdata |only tnet-0.0.6/tnet/data/clustering_sample2.rdata |only tnet-0.0.6/tnet/man/Freeman_EIES_3.Sym_sum.Rd |only tnet-0.0.6/tnet/man/OnlineComm.f1000.Rd |only tnet-0.0.6/tnet/man/sample.network.1.Rd |only tnet-0.0.6/tnet/man/sample.network.2.Rd |only tnet-0.0.6/tnet/man/weighted_richclub.Rd |only tnet-0.1.0/tnet/DESCRIPTION | 16 ++--- tnet-0.1.0/tnet/LICENSE | 2 tnet-0.1.0/tnet/R/projecting_tm.R |only tnet-0.1.0/tnet/R/rg_reshuffling_tm.R |only tnet-0.1.0/tnet/R/weighted_richclub_tm.R |only tnet-0.1.0/tnet/R/weighted_richclub_w.R |only tnet-0.1.0/tnet/data/Cross.Parker.Consulting.RData |only tnet-0.1.0/tnet/data/Cross.Parker.Manufacturing.RData |only tnet-0.1.0/tnet/data/Freemans.EIES.RData |only tnet-0.1.0/tnet/data/Newman.Condmat.95.99.RData |only tnet-0.1.0/tnet/data/OnlineComm.f1000.rdata |binary tnet-0.1.0/tnet/data/USairport.n500.RData |only tnet-0.1.0/tnet/data/celegans.n306.RData |only tnet-0.1.0/tnet/inst/CITATION | 26 ++++---- tnet-0.1.0/tnet/man/Cross.Parker.Consulting.net.info.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Consulting.net.value.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Consulting.node.gender.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Consulting.node.location.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Consulting.node.orglevel.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Consulting.node.region.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Manufacturing.net.aware.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Manufacturing.net.info.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Manufacturing.node.location.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Manufacturing.node.orglevel.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Manufacturing.node.tenure.Rd |only tnet-0.1.0/tnet/man/Freemans.EIES.net.1.n48.Rd |only tnet-0.1.0/tnet/man/Freemans.EIES.net.2.n48.Rd |only tnet-0.1.0/tnet/man/Freemans.EIES.net.3.n32.Rd |only tnet-0.1.0/tnet/man/Freemans.EIES.node.Citations.n32.Rd |only tnet-0.1.0/tnet/man/Freemans.EIES.node.Discipline.n32.Rd |only tnet-0.1.0/tnet/man/Newman.Condmat.95.99.net.1mode.wNewman.Rd |only tnet-0.1.0/tnet/man/Newman.Condmat.95.99.net.2mode.Rd |only tnet-0.1.0/tnet/man/OnlineComm.f1000.lnet.Rd |only tnet-0.1.0/tnet/man/USairport.n500.net.Rd |only tnet-0.1.0/tnet/man/betweenness_w.Rd | 11 +-- tnet-0.1.0/tnet/man/celegans.n306.net.Rd |only tnet-0.1.0/tnet/man/closeness_w.Rd | 15 ++-- tnet-0.1.0/tnet/man/clustering_w.Rd | 9 +- tnet-0.1.0/tnet/man/clustering_w_barrat.Rd | 10 +-- tnet-0.1.0/tnet/man/degree_w.Rd | 9 +- tnet-0.1.0/tnet/man/dichotomise.Rd | 4 - tnet-0.1.0/tnet/man/distance_w.Rd | 7 -- tnet-0.1.0/tnet/man/projecting_tm.Rd |only tnet-0.1.0/tnet/man/rg_reshuffling_tm.Rd |only tnet-0.1.0/tnet/man/rg_reshuffling_w.Rd | 6 + tnet-0.1.0/tnet/man/rg_w.Rd | 4 - tnet-0.1.0/tnet/man/shrink_to_weighted_network.Rd | 8 -- tnet-0.1.0/tnet/man/symmetrise.Rd | 8 -- tnet-0.1.0/tnet/man/tnet-package.Rd | 32 ++++------ tnet-0.1.0/tnet/man/weighted_richclub_tm.Rd |only tnet-0.1.0/tnet/man/weighted_richclub_w.Rd |only 60 files changed, 82 insertions(+), 85 deletions(-)
Author: Owen Jones, Robert Maillardet, Andrew Robinson, Olga Borovkova,
and Steven Carnie
Title: Functions and Datasets for "An Introduction to Scientific
Programming and Simulation, Using R".
Description: This package provides functions and datasets from the book
"An Introduction to Scientific Programming and Simulation,
Using R".
Diff between spuRs versions 1.0.2 dated 2009-03-19 and 1.0.3 dated 2009-06-16
DESCRIPTION | 8 ++++---- inst/resources/errata.pdf |only inst/resources/scripts/linesearch.r | 2 +- man/spuRs-package.Rd | 8 ++++---- 4 files changed, 9 insertions(+), 9 deletions(-)
Author: Adrian Baddeley
Diff between spatstat versions 1.15-3 dated 2009-05-14 and 1.15-4 dated 2009-06-16
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Contains
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, and pixel images. Point
process models can be fitted to point pattern data. Cluster
type models are fitted by the method of minimum contrast. Very
general Gibbs point process models can be fitted to point
pattern data using a function ppm similar to lm or glm. Models
may include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated
automatically. Also provides facilities for formal inference
(such as chi-squared tests) and model diagnostics (including
simulation envelopes, residuals, residual plots and Q-Q plots).
spatstat-1.15-3/spatstat/R/subsetget.ppp.R |only
spatstat-1.15-3/spatstat/man/subset.fasp.Rd |only
spatstat-1.15-3/spatstat/man/subset.fv.Rd |only
spatstat-1.15-3/spatstat/man/subset.im.Rd |only
spatstat-1.15-3/spatstat/man/subset.listof.Rd |only
spatstat-1.15-3/spatstat/man/subset.ppp.Rd |only
spatstat-1.15-3/spatstat/man/subset.psp.Rd |only
spatstat-1.15-3/spatstat/man/subset.quad.Rd |only
spatstat-1.15-3/spatstat/man/subset.splitppp.Rd |only
spatstat-1.15-3/spatstat/man/subset.tess.Rd |only
spatstat-1.15-3/spatstat/man/subsetget.im.Rd |only
spatstat-1.15-4/spatstat/.Rbuildindex.5299 |only
spatstat-1.15-4/spatstat/.Rbuildindex.6375 |only
spatstat-1.15-4/spatstat/DESCRIPTION | 8
spatstat-1.15-4/spatstat/INDEX | 11
spatstat-1.15-4/spatstat/R/Fest.S | 2
spatstat-1.15-4/spatstat/R/First.R | 4
spatstat-1.15-4/spatstat/R/Iest.R | 4
spatstat-1.15-4/spatstat/R/Jest.S | 4
spatstat-1.15-4/spatstat/R/Kest.S | 46 +
spatstat-1.15-4/spatstat/R/Kinhom.S | 17
spatstat-1.15-4/spatstat/R/Kmulti.S | 29 -
spatstat-1.15-4/spatstat/R/Kmulti.inhom.R | 41 -
spatstat-1.15-4/spatstat/R/connected.R | 4
spatstat-1.15-4/spatstat/R/distbdry.S | 100 ++-
spatstat-1.15-4/spatstat/R/envelope.R | 28
spatstat-1.15-4/spatstat/R/fasp.R | 5
spatstat-1.15-4/spatstat/R/fv.R | 6
spatstat-1.15-4/spatstat/R/images.R | 8
spatstat-1.15-4/spatstat/R/localK.R | 13
spatstat-1.15-4/spatstat/R/markcorr.R | 32 -
spatstat-1.15-4/spatstat/R/nearestsegment.R | 16
spatstat-1.15-4/spatstat/R/pcf.R | 8
spatstat-1.15-4/spatstat/R/ppmclass.R | 14
spatstat-1.15-4/spatstat/R/ppp.S | 3
spatstat-1.15-4/spatstat/R/psp.R | 3
spatstat-1.15-4/spatstat/R/replace.ppp.R |only
spatstat-1.15-4/spatstat/R/wingeom.S | 11
spatstat-1.15-4/spatstat/R/xypolygon.S | 46 +
spatstat-1.15-4/spatstat/demo/spatstat.R | 35 -
spatstat-1.15-4/spatstat/inst/doc/shapefiles.pdf | 662 +++++++++++------------
spatstat-1.15-4/spatstat/man/00spatstat.Rd | 4
spatstat-1.15-4/spatstat/man/Extract.fasp.Rd |only
spatstat-1.15-4/spatstat/man/Extract.fv.Rd |only
spatstat-1.15-4/spatstat/man/Extract.im.Rd |only
spatstat-1.15-4/spatstat/man/Extract.listof.Rd |only
spatstat-1.15-4/spatstat/man/Extract.ppp.Rd |only
spatstat-1.15-4/spatstat/man/Extract.psp.Rd |only
spatstat-1.15-4/spatstat/man/Extract.quad.Rd |only
spatstat-1.15-4/spatstat/man/Extract.splitppp.Rd |only
spatstat-1.15-4/spatstat/man/Extract.tess.Rd |only
spatstat-1.15-4/spatstat/man/Fest.Rd | 3
spatstat-1.15-4/spatstat/man/Iest.Rd | 3
spatstat-1.15-4/spatstat/man/Jest.Rd | 3
spatstat-1.15-4/spatstat/man/Kcross.Rd | 3
spatstat-1.15-4/spatstat/man/Kcross.inhom.Rd | 3
spatstat-1.15-4/spatstat/man/Kdot.Rd | 3
spatstat-1.15-4/spatstat/man/Kdot.inhom.Rd | 3
spatstat-1.15-4/spatstat/man/Kest.Rd | 10
spatstat-1.15-4/spatstat/man/Kinhom.Rd | 3
spatstat-1.15-4/spatstat/man/Kmulti.Rd | 3
spatstat-1.15-4/spatstat/man/Replace.im.Rd |only
spatstat-1.15-4/spatstat/man/closing.owin.Rd | 9
spatstat-1.15-4/spatstat/man/connected.Rd | 2
spatstat-1.15-4/spatstat/man/dilate.owin.Rd | 24
spatstat-1.15-4/spatstat/man/envelope.Rd | 3
spatstat-1.15-4/spatstat/man/erode.owin.Rd | 29 -
spatstat-1.15-4/spatstat/man/internal.Rd | 6
spatstat-1.15-4/spatstat/man/localK.Rd | 5
spatstat-1.15-4/spatstat/man/markcorr.Rd | 3
spatstat-1.15-4/spatstat/man/opening.owin.Rd | 9
spatstat-1.15-4/spatstat/man/ppp.object.Rd | 1
spatstat-1.15-4/spatstat/man/psp.object.Rd | 4
spatstat-1.15-4/spatstat/man/simplify.owin.Rd |only
spatstat-1.15-4/spatstat/man/smooth.ppp.Rd | 19
75 files changed, 763 insertions(+), 552 deletions(-)
Author: Simon Urbanek
Diff between rJava versions 0.6-2 dated 2009-01-26 and 0.6-3 dated 2009-06-16
Title: Low-level R to Java interface
Description: Low-level interface to Java VM very much like .C/.Call and
friends. Allows creation of objects, calling methods and
accessing fields.
DESCRIPTION | 8 ++-
NEWS | 8 +++
R/loader.R | 6 +-
jri/NEWS | 19 ++++++++
jri/REXP.java | 11 ++++
jri/Rengine.java | 102 ++++++++++++++++++++++++++++++++++++++++++---
jri/configure | 12 ++++-
jri/configure.ac | 12 ++++-
jri/src/Rengine.c | 102 +++++++++++++++++++++++++++++++++++++++++++++
jri/src/jri.c | 52 +++++++++++++++++++++++
jri/src/jri.h | 12 ++++-
man/jpackage.Rd | 30 +++++++------
src/Rglue.c | 120 +++++++++++++++++++++++++++++++++---------------------
src/fields.c | 21 +++++----
src/rJava.h | 13 ++++-
15 files changed, 436 insertions(+), 92 deletions(-)
Author: Daniel B. Wright
Title: Wright & London's Modern Regression Techniques
Description: Datasets and functions from Wright and London's Modern
Regression Techniques
Diff between mrt versions 0.1 dated 2009-06-08 and 0.2 dated 2009-06-16
DESCRIPTION | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-)
Author: Jussi Klemela
Diff between denpro versions 0.8.4 dated 2008-02-19 and 0.9.0 dated 2009-06-16
Title: Visualization of multivariate, functions, sets, and data
Description: The package provides tools to (1) visualize multivariate
density functions and density estimates with level set trees,
(2) visualize level sets with shape trees, (3) visualize
multivariate data with tail trees, (4) visualize scales of
multivariate density estimates with mode graphs and branching
maps, and (5) visualize anisotropic spread with 2D volume
functions and 2D probability conetent functions. Level set
trees visualize mode structure, shape trees visualize shapes of
level sets of unimodal densities, and tail trees visualize
connected data sets. The kernel estimator is implemented but
the package may be applied for visualizing other density
estimates.
DESCRIPTION | 43 +++++++--------
R/allokoi.new.R |only
R/denpro.R |only
R/dist.func.R | 6 +-
R/draw.kern.R | 5 +
R/draw.levset.R | 6 +-
R/draw.pcf.R | 37 +++++++------
R/graph.matrix.R | 4 -
R/graph.matrix.level.R | 14 ++---
R/histo1d.R | 39 +++++++++++---
R/leafsfirst.lst.R | 19 ++++++
R/leafsfirst.visu.R | 6 +-
R/lst2xy.R | 5 +
R/lstseq.kern.R | 4 -
R/nn.radit.R | 4 +
R/paraclus.R | 21 ++++---
R/paracoor.R | 10 ++-
R/pcf.func.R | 70 +++++++++++++++++++++----
R/pcf.histo.R | 7 +-
R/pcf.kern.R | 136 +++++++++++++++++++++++++++++++++++++++++++++----
R/pcf.kernC.R |only
R/plot.kernscale.R | 9 +--
R/plotbary.R | 17 +++---
R/plotmodet.R | 7 +-
R/plotprof.R | 12 ++--
R/plottree.R | 22 ++++++-
R/plotvecs.R | 5 +
R/plotvolu.R | 18 ++++--
R/plotvolu.new.R |only
R/pp.plot.R | 6 +-
R/preprocess.R |only
R/profkernR.R | 2
R/qq.plot.R | 6 +-
R/siborder.new.R |only
R/sim.data.R | 4 -
R/sim.penta4d.R | 4 -
R/stseq.R | 4 -
R/touch.R | 14 ++---
R/tree.segme.R | 9 ++-
R/treedisc.R | 3 -
man/denpro-package.Rd | 15 ++---
man/draw.levset.Rd | 7 ++
man/draw.pcf.Rd | 2
man/lstseq.kern.Rd | 4 +
man/paracoor.Rd | 8 ++
man/pcf.kern.Rd | 42 +++++++++++----
man/plotbary.Rd | 35 +++++++-----
man/plotmodet.Rd | 7 ++
man/plottree.Rd | 10 ++-
man/plotvolu.Rd | 16 +++--
man/scaletable.Rd | 8 +-
man/sim.data.Rd | 4 +
man/stseq.Rd | 9 +--
man/tree.segme.Rd | 4 -
54 files changed, 536 insertions(+), 213 deletions(-)
Author: Rasmus E. Benestad
Diff between clim.pact versions 2.2-37 dated 2009-06-14 and 2.2-38 dated 2009-06-16
Title: Climate analysis and empirical-statistical downscaling (ESD)
package for monthly and daily data.
Description: The package contains R functions for retrieving data,
making climate analysis and downscaling of monthly mean and
daily mean global climate scenarios. (Windows-users may need to
obtain the 'ncdf' package from URL
'http://www.stats.ox.ac.uk/pub/RWin/' to get clim.pact to
work). The package is also described in the book
'Empirical-Statistical Downscaling
(http://www.worldscibooks.com/environsci/6908.html)
DESCRIPTION | 8 ++++----
R/eof.R | 41 +++++++++++++++++++++++++----------------
2 files changed, 29 insertions(+), 20 deletions(-)
Author: S original
Diff between boot versions 1.2-36 dated 2009-03-12 and 1.2-37 dated 2009-06-16
Title: Bootstrap R (S-Plus) Functions (Canty)
Description: functions and datasets for bootstrapping from the book
"Bootstrap Methods and Their Applications" by A. C. Davison and
D. V. Hinkley (1997, CUP).
ChangeLog | 7 ++++++-
DESCRIPTION | 8 ++++----
inst/po/en@quot/LC_MESSAGES/R-boot.mo |binary
inst/po/fr/LC_MESSAGES/R-boot.mo |binary
inst/po/ru/LC_MESSAGES/R-boot.mo |binary
man/censboot.Rd | 1 +
po/R-boot.pot | 14 ++++++++++----
po/R-en@quot.po | 27 ++++++++++++++++++---------
po/R-fr.po | 22 +++++++++++++++-------
po/R-ru.po | 28 ++++++++++++++++++----------
10 files changed, 72 insertions(+), 35 deletions(-)
Author: Peter Wolf, Uni Bielefeld
Title: Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, and
some slider functions
Description: set of functions for drawing some special plots: stem.leaf
plots a stem and leaf plot bagplot plots a bagplot faces plots
chernoff faces spin3R for an inspection of a 3-dim point cloud
slider functions for interactive graphics
Diff between aplpack versions 1.1.1 dated 2007-09-03 and 1.2.1 dated 2009-06-16
aplpack-1.1.1/aplpack/man/aplpack.package.Rd |only aplpack-1.2.1/aplpack/DESCRIPTION | 29 - aplpack-1.2.1/aplpack/NAMESPACE |only aplpack-1.2.1/aplpack/R/bagplot.R | 13 aplpack-1.2.1/aplpack/R/faces.R | 127 +++++ aplpack-1.2.1/aplpack/R/plot.faces.R | 73 ++- aplpack-1.2.1/aplpack/R/slider.R |only aplpack-1.2.1/aplpack/R/slider.bootstrap.lm.plot.R |only aplpack-1.2.1/aplpack/R/slider.brush.pairs.R |only aplpack-1.2.1/aplpack/R/slider.brush.plot.xy.R |only aplpack-1.2.1/aplpack/R/slider.density.R |only aplpack-1.2.1/aplpack/R/slider.hist.R |only aplpack-1.2.1/aplpack/R/slider.lowess.plot.R |only aplpack-1.2.1/aplpack/R/slider.smooth.plot.ts.R |only aplpack-1.2.1/aplpack/R/slider.split.plot.ts.R |only aplpack-1.2.1/aplpack/R/slider.zoom.plot.ts.R |only aplpack-1.2.1/aplpack/R/stem.leaf.R | 45 +- aplpack-1.2.1/aplpack/inst/doc |only aplpack-1.2.1/aplpack/inst/src/bagplot.rev | 48 ++ aplpack-1.2.1/aplpack/inst/src/doaplpack | 86 +++- aplpack-1.2.1/aplpack/inst/src/faces.rev | 386 ++++++++++++++---- aplpack-1.2.1/aplpack/inst/src/ms.rev | 219 +++++++++- aplpack-1.2.1/aplpack/inst/src/sliderfns.rev |only aplpack-1.2.1/aplpack/man/faces.Rd | 50 ++ aplpack-1.2.1/aplpack/man/slider.Rd |only aplpack-1.2.1/aplpack/man/slider.bootstrap.lm.plot.Rd |only aplpack-1.2.1/aplpack/man/slider.brush.Rd |only aplpack-1.2.1/aplpack/man/slider.hist.Rd |only aplpack-1.2.1/aplpack/man/slider.lowess.plot.Rd |only aplpack-1.2.1/aplpack/man/slider.smooth.plot.ts.Rd |only aplpack-1.2.1/aplpack/man/slider.split.plot.ts.Rd |only aplpack-1.2.1/aplpack/man/slider.zoom.plot.ts.Rd |only aplpack-1.2.1/aplpack/man/stem.leaf.Rd | 2 33 files changed, 898 insertions(+), 180 deletions(-)
Author: Thomas W. Yee
Diff between VGAM versions 0.7-8 dated 2009-02-05 and 0.7-9 dated 2009-06-16
Title: Vector Generalized Linear and Additive Models
Description: Vector generalized linear and additive models, and
associated models (Reduced-Rank VGLMs, Quadratic RR-VGLMs,
Reduced-Rank VGAMs). This package fits many models and
distribution by maximum likelihood estimation (MLE) or
penalized MLE. Also fits constrained ordination models in
ecology.
VGAM-0.7-8/VGAM/R/build.terms.s |only
VGAM-0.7-8/VGAM/R/print.summary.others.q |only
VGAM-0.7-8/VGAM/R/summary.others.q |only
VGAM-0.7-8/VGAM/man/alsqreg.Rd |only
VGAM-0.7-8/VGAM/man/dzeta.Rd |only
VGAM-0.7-9/VGAM/DESCRIPTION | 20
VGAM-0.7-9/VGAM/NAMESPACE | 80
VGAM-0.7-9/VGAM/NEWS | 61
VGAM-0.7-9/VGAM/R/aamethods.q | 300 --
VGAM-0.7-9/VGAM/R/bAIC.q | 53
VGAM-0.7-9/VGAM/R/build.terms.vlm.q | 74
VGAM-0.7-9/VGAM/R/calibrate.q | 14
VGAM-0.7-9/VGAM/R/cao.R | 8
VGAM-0.7-9/VGAM/R/cao.fit.q | 226 -
VGAM-0.7-9/VGAM/R/coef.vlm.q | 158 -
VGAM-0.7-9/VGAM/R/cqo.R | 4
VGAM-0.7-9/VGAM/R/cqo.fit.q | 57
VGAM-0.7-9/VGAM/R/family.aunivariate.q | 231 +
VGAM-0.7-9/VGAM/R/family.basics.q | 131 -
VGAM-0.7-9/VGAM/R/family.binomial.q | 502 ++-
VGAM-0.7-9/VGAM/R/family.bivariate.q | 246 -
VGAM-0.7-9/VGAM/R/family.categorical.q | 435 ++-
VGAM-0.7-9/VGAM/R/family.censored.q | 10
VGAM-0.7-9/VGAM/R/family.circular.q | 64
VGAM-0.7-9/VGAM/R/family.extremes.q | 1350 ++++------
VGAM-0.7-9/VGAM/R/family.fishing.q | 4
VGAM-0.7-9/VGAM/R/family.functions.q | 7
VGAM-0.7-9/VGAM/R/family.genetic.q | 808 +++---
VGAM-0.7-9/VGAM/R/family.glmgam.q | 177 -
VGAM-0.7-9/VGAM/R/family.mixture.q | 36
VGAM-0.7-9/VGAM/R/family.nonlinear.q | 12
VGAM-0.7-9/VGAM/R/family.normal.q | 265 +-
VGAM-0.7-9/VGAM/R/family.positive.q | 68
VGAM-0.7-9/VGAM/R/family.qreg.q | 496 +++
VGAM-0.7-9/VGAM/R/family.rcqo.q | 10
VGAM-0.7-9/VGAM/R/family.rrr.q | 887 +++---
VGAM-0.7-9/VGAM/R/family.survival.q | 82
VGAM-0.7-9/VGAM/R/family.ts.q | 18
VGAM-0.7-9/VGAM/R/family.univariate.q | 2961 ++++++++++++++---------
VGAM-0.7-9/VGAM/R/family.zeroinf.q | 184 -
VGAM-0.7-9/VGAM/R/formula.vlm.q |only
VGAM-0.7-9/VGAM/R/links.q | 18
VGAM-0.7-9/VGAM/R/model.matrix.vglm.q | 415 +--
VGAM-0.7-9/VGAM/R/plot.vglm.q | 608 +---
VGAM-0.7-9/VGAM/R/predict.vgam.q | 21
VGAM-0.7-9/VGAM/R/predict.vglm.q | 229 -
VGAM-0.7-9/VGAM/R/predict.vlm.q | 380 +-
VGAM-0.7-9/VGAM/R/qrrvglm.control.q | 32
VGAM-0.7-9/VGAM/R/qtplot.q | 18
VGAM-0.7-9/VGAM/R/residuals.vlm.q | 75
VGAM-0.7-9/VGAM/R/rrvglm.R | 24
VGAM-0.7-9/VGAM/R/rrvglm.control.q | 22
VGAM-0.7-9/VGAM/R/rrvglm.fit.q | 168 -
VGAM-0.7-9/VGAM/R/s.vam.q | 45
VGAM-0.7-9/VGAM/R/summary.vgam.q | 6
VGAM-0.7-9/VGAM/R/summary.vglm.q | 26
VGAM-0.7-9/VGAM/R/summary.vlm.q | 24
VGAM-0.7-9/VGAM/R/uqo.R | 24
VGAM-0.7-9/VGAM/R/vgam.R | 12
VGAM-0.7-9/VGAM/R/vgam.control.q | 19
VGAM-0.7-9/VGAM/R/vgam.fit.q | 100
VGAM-0.7-9/VGAM/R/vgam.match.q | 2
VGAM-0.7-9/VGAM/R/vglm.R | 10
VGAM-0.7-9/VGAM/R/vglm.control.q | 28
VGAM-0.7-9/VGAM/R/vglm.fit.q | 160 -
VGAM-0.7-9/VGAM/R/vlm.R | 30
VGAM-0.7-9/VGAM/R/vlm.wfit.q | 76
VGAM-0.7-9/VGAM/R/vsmooth.spline.q | 44
VGAM-0.7-9/VGAM/data/olympic.txt |only
VGAM-0.7-9/VGAM/man/AA.Aa.aa.Rd | 15
VGAM-0.7-9/VGAM/man/AB.Ab.aB.ab.Rd | 5
VGAM-0.7-9/VGAM/man/AB.Ab.aB.ab2.Rd | 7
VGAM-0.7-9/VGAM/man/ABO.Rd | 32
VGAM-0.7-9/VGAM/man/AICvlm.Rd | 13
VGAM-0.7-9/VGAM/man/BratUC.Rd | 2
VGAM-0.7-9/VGAM/man/Coef.rrvglm-class.Rd | 1
VGAM-0.7-9/VGAM/man/Coef.rrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/CommonVGAMffArguments.Rd | 30
VGAM-0.7-9/VGAM/man/DagumUC.Rd | 8
VGAM-0.7-9/VGAM/man/DeLury.Rd | 4
VGAM-0.7-9/VGAM/man/FiskUC.Rd | 18
VGAM-0.7-9/VGAM/man/G1G2G3.Rd | 12
VGAM-0.7-9/VGAM/man/Inv.gaussian.Rd | 11
VGAM-0.7-9/VGAM/man/InvlomaxUC.Rd | 14
VGAM-0.7-9/VGAM/man/InvparalogisticUC.Rd | 14
VGAM-0.7-9/VGAM/man/Links.Rd | 1
VGAM-0.7-9/VGAM/man/LomaxUC.Rd | 14
VGAM-0.7-9/VGAM/man/Max.Rd | 1
VGAM-0.7-9/VGAM/man/MaxwellUC.Rd | 8
VGAM-0.7-9/VGAM/man/Opt.Rd | 1
VGAM-0.7-9/VGAM/man/ParalogisticUC.Rd | 14
VGAM-0.7-9/VGAM/man/Pareto.Rd | 8
VGAM-0.7-9/VGAM/man/ParetoIVUC.Rd | 12
VGAM-0.7-9/VGAM/man/RayleighUC.Rd | 8
VGAM-0.7-9/VGAM/man/SinmadUC.Rd | 14
VGAM-0.7-9/VGAM/man/Tol.Rd | 1
VGAM-0.7-9/VGAM/man/VGAM-package.Rd | 19
VGAM-0.7-9/VGAM/man/acat.Rd | 1
VGAM-0.7-9/VGAM/man/alaplace3.Rd | 58
VGAM-0.7-9/VGAM/man/alaplaceUC.Rd | 61
VGAM-0.7-9/VGAM/man/amlbinomial.Rd | 6
VGAM-0.7-9/VGAM/man/amlexponential.Rd | 6
VGAM-0.7-9/VGAM/man/amlnormal.Rd |only
VGAM-0.7-9/VGAM/man/amlpoisson.Rd | 6
VGAM-0.7-9/VGAM/man/auuc.Rd | 3
VGAM-0.7-9/VGAM/man/benini.Rd | 6
VGAM-0.7-9/VGAM/man/beniniUC.Rd | 8
VGAM-0.7-9/VGAM/man/beta.ab.Rd | 2
VGAM-0.7-9/VGAM/man/betabin.ab.Rd | 24
VGAM-0.7-9/VGAM/man/betabinUC.Rd | 8
VGAM-0.7-9/VGAM/man/betabinomial.Rd | 39
VGAM-0.7-9/VGAM/man/betaprime.Rd | 2
VGAM-0.7-9/VGAM/man/bilogis4UC.Rd | 8
VGAM-0.7-9/VGAM/man/bilogistic4.Rd | 4
VGAM-0.7-9/VGAM/man/binom2.or.Rd | 12
VGAM-0.7-9/VGAM/man/binom2.rho.Rd | 1
VGAM-0.7-9/VGAM/man/binomialff.Rd | 16
VGAM-0.7-9/VGAM/man/bisa.Rd | 2
VGAM-0.7-9/VGAM/man/bisaUC.Rd | 2
VGAM-0.7-9/VGAM/man/bminz.Rd | 7
VGAM-0.7-9/VGAM/man/bortUC.Rd | 13
VGAM-0.7-9/VGAM/man/calibrate.Rd | 1
VGAM-0.7-9/VGAM/man/calibrate.qrrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/calibrate.qrrvglm.control.Rd | 1
VGAM-0.7-9/VGAM/man/cao.Rd | 17
VGAM-0.7-9/VGAM/man/cao.control.Rd | 1
VGAM-0.7-9/VGAM/man/cardUC.Rd | 8
VGAM-0.7-9/VGAM/man/cauchy.Rd | 18
VGAM-0.7-9/VGAM/man/ccoef.Rd | 1
VGAM-0.7-9/VGAM/man/cdf.lmscreg.Rd | 9
VGAM-0.7-9/VGAM/man/cenpoisson.Rd | 2
VGAM-0.7-9/VGAM/man/cgumbel.Rd | 3
VGAM-0.7-9/VGAM/man/chest.Rd | 3
VGAM-0.7-9/VGAM/man/coalminers.Rd | 3
VGAM-0.7-9/VGAM/man/constraints.Rd | 11
VGAM-0.7-9/VGAM/man/cqo.Rd | 84
VGAM-0.7-9/VGAM/man/cratio.Rd | 1
VGAM-0.7-9/VGAM/man/cumulative.Rd | 132 -
VGAM-0.7-9/VGAM/man/deplot.lmscreg.Rd | 5
VGAM-0.7-9/VGAM/man/dexpbinomial.Rd | 5
VGAM-0.7-9/VGAM/man/dirichlet.Rd | 11
VGAM-0.7-9/VGAM/man/dirmultinomial.Rd | 2
VGAM-0.7-9/VGAM/man/enzyme.Rd | 1
VGAM-0.7-9/VGAM/man/felixUC.Rd | 8
VGAM-0.7-9/VGAM/man/fgm.Rd | 2
VGAM-0.7-9/VGAM/man/fill.Rd | 195 -
VGAM-0.7-9/VGAM/man/fitted.vlm.Rd | 8
VGAM-0.7-9/VGAM/man/frank.Rd | 2
VGAM-0.7-9/VGAM/man/frankUC.Rd | 8
VGAM-0.7-9/VGAM/man/frechet.Rd | 8
VGAM-0.7-9/VGAM/man/frechetUC.Rd | 8
VGAM-0.7-9/VGAM/man/freund61.Rd | 2
VGAM-0.7-9/VGAM/man/fsqrt.Rd | 6
VGAM-0.7-9/VGAM/man/gammahyp.Rd | 2
VGAM-0.7-9/VGAM/man/gaussianff.Rd | 2
VGAM-0.7-9/VGAM/man/gev.Rd | 31
VGAM-0.7-9/VGAM/man/gevUC.Rd | 40
VGAM-0.7-9/VGAM/man/gew.Rd | 1
VGAM-0.7-9/VGAM/man/ggammaUC.Rd | 8
VGAM-0.7-9/VGAM/man/golf.Rd | 6
VGAM-0.7-9/VGAM/man/gpd.Rd | 22
VGAM-0.7-9/VGAM/man/gpdUC.Rd | 40
VGAM-0.7-9/VGAM/man/grc.Rd | 29
VGAM-0.7-9/VGAM/man/gumbel.Rd | 5
VGAM-0.7-9/VGAM/man/gumbelIbiv.Rd | 2
VGAM-0.7-9/VGAM/man/gumbelUC.Rd | 10
VGAM-0.7-9/VGAM/man/hspider.Rd | 1
VGAM-0.7-9/VGAM/man/hunua.Rd | 6
VGAM-0.7-9/VGAM/man/hyperg.Rd | 2
VGAM-0.7-9/VGAM/man/hzetaUC.Rd | 7
VGAM-0.7-9/VGAM/man/invbinomial.Rd | 2
VGAM-0.7-9/VGAM/man/kumarUC.Rd | 20
VGAM-0.7-9/VGAM/man/laplaceUC.Rd | 8
VGAM-0.7-9/VGAM/man/leipnik.Rd | 2
VGAM-0.7-9/VGAM/man/levy.Rd | 2
VGAM-0.7-9/VGAM/man/lgammaUC.Rd | 8
VGAM-0.7-9/VGAM/man/lino.Rd | 2
VGAM-0.7-9/VGAM/man/linoUC.Rd | 7
VGAM-0.7-9/VGAM/man/lirat.Rd | 1
VGAM-0.7-9/VGAM/man/lms.bcg.Rd | 14
VGAM-0.7-9/VGAM/man/lms.bcn.Rd | 11
VGAM-0.7-9/VGAM/man/lms.yjn.Rd | 11
VGAM-0.7-9/VGAM/man/logff.Rd | 4
VGAM-0.7-9/VGAM/man/logistic.Rd | 3
VGAM-0.7-9/VGAM/man/logit.Rd | 2
VGAM-0.7-9/VGAM/man/loglapUC.Rd |only
VGAM-0.7-9/VGAM/man/loglaplace.Rd |only
VGAM-0.7-9/VGAM/man/loglinb2.Rd | 1
VGAM-0.7-9/VGAM/man/loglinb3.Rd | 3
VGAM-0.7-9/VGAM/man/lqnorm.Rd | 2
VGAM-0.7-9/VGAM/man/lv.Rd | 1
VGAM-0.7-9/VGAM/man/lvplot.Rd | 1
VGAM-0.7-9/VGAM/man/lvplot.rrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/margeff.Rd |only
VGAM-0.7-9/VGAM/man/mbinomial.Rd | 2
VGAM-0.7-9/VGAM/man/mccullagh89.Rd | 2
VGAM-0.7-9/VGAM/man/mckaygamma2.Rd | 12
VGAM-0.7-9/VGAM/man/micmen.Rd | 1
VGAM-0.7-9/VGAM/man/model.framevlm.Rd | 20
VGAM-0.7-9/VGAM/man/model.matrixvlm.Rd | 18
VGAM-0.7-9/VGAM/man/morgenstern.Rd | 2
VGAM-0.7-9/VGAM/man/multinomial.Rd | 134 -
VGAM-0.7-9/VGAM/man/nakagami.Rd | 2
VGAM-0.7-9/VGAM/man/nakagamiUC.Rd | 7
VGAM-0.7-9/VGAM/man/nbolf.Rd | 6
VGAM-0.7-9/VGAM/man/negbinomial.Rd | 4
VGAM-0.7-9/VGAM/man/notdocumentedyet.Rd | 46
VGAM-0.7-9/VGAM/man/nzc.Rd | 3
VGAM-0.7-9/VGAM/man/olympic.Rd |only
VGAM-0.7-9/VGAM/man/ordpoisson.Rd | 6
VGAM-0.7-9/VGAM/man/oxtemp.Rd | 1
VGAM-0.7-9/VGAM/man/pareto1.Rd | 4
VGAM-0.7-9/VGAM/man/persp.qrrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/plackett.Rd | 2
VGAM-0.7-9/VGAM/man/plotdeplot.lmscreg.Rd | 5
VGAM-0.7-9/VGAM/man/plotqrrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/plotqtplot.lmscreg.Rd | 1
VGAM-0.7-9/VGAM/man/plotvgam.Rd | 65
VGAM-0.7-9/VGAM/man/plotvgam.control.Rd | 13
VGAM-0.7-9/VGAM/man/pneumo.Rd | 4
VGAM-0.7-9/VGAM/man/poissonp.Rd | 2
VGAM-0.7-9/VGAM/man/polf.Rd | 6
VGAM-0.7-9/VGAM/man/polonoUC.Rd | 2
VGAM-0.7-9/VGAM/man/posbinomUC.Rd | 3
VGAM-0.7-9/VGAM/man/posbinomial.Rd | 4
VGAM-0.7-9/VGAM/man/posnegbinUC.Rd | 1
VGAM-0.7-9/VGAM/man/posnegbinomial.Rd | 4
VGAM-0.7-9/VGAM/man/posnormUC.Rd | 2
VGAM-0.7-9/VGAM/man/pospoisUC.Rd | 3
VGAM-0.7-9/VGAM/man/predict.qrrvglm.Rd | 7
VGAM-0.7-9/VGAM/man/predict.vglm.Rd | 23
VGAM-0.7-9/VGAM/man/qrrvglm.control.Rd | 1
VGAM-0.7-9/VGAM/man/qtplot.gumbel.Rd | 5
VGAM-0.7-9/VGAM/man/qtplot.lmscreg.Rd | 1
VGAM-0.7-9/VGAM/man/quasibinomialff.Rd | 1
VGAM-0.7-9/VGAM/man/rayleigh.Rd | 4
VGAM-0.7-9/VGAM/man/rcqo.Rd | 2
VGAM-0.7-9/VGAM/man/recexp1.Rd | 15
VGAM-0.7-9/VGAM/man/recnormal1.Rd | 15
VGAM-0.7-9/VGAM/man/riceUC.Rd | 8
VGAM-0.7-9/VGAM/man/rrar.Rd | 14
VGAM-0.7-9/VGAM/man/rrvglm-class.Rd | 1
VGAM-0.7-9/VGAM/man/rrvglm.Rd | 2
VGAM-0.7-9/VGAM/man/rrvglm.control.Rd | 5
VGAM-0.7-9/VGAM/man/ruge.Rd | 1
VGAM-0.7-9/VGAM/man/s.Rd | 1
VGAM-0.7-9/VGAM/man/seq2binomial.Rd | 2
VGAM-0.7-9/VGAM/man/skellam.Rd | 3
VGAM-0.7-9/VGAM/man/skewnormal1.Rd | 2
VGAM-0.7-9/VGAM/man/snormUC.Rd | 8
VGAM-0.7-9/VGAM/man/sratio.Rd | 1
VGAM-0.7-9/VGAM/man/tikuvUC.Rd | 8
VGAM-0.7-9/VGAM/man/toxop.Rd | 1
VGAM-0.7-9/VGAM/man/triangle.Rd | 5
VGAM-0.7-9/VGAM/man/triangleUC.Rd | 8
VGAM-0.7-9/VGAM/man/trplot.Rd | 1
VGAM-0.7-9/VGAM/man/trplot.qrrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/undocumented-methods.Rd | 39
VGAM-0.7-9/VGAM/man/uqo.Rd | 1
VGAM-0.7-9/VGAM/man/usagrain.Rd | 3
VGAM-0.7-9/VGAM/man/venice.Rd | 5
VGAM-0.7-9/VGAM/man/vgam-class.Rd | 1
VGAM-0.7-9/VGAM/man/vgam.Rd | 2
VGAM-0.7-9/VGAM/man/vgam.control.Rd | 28
VGAM-0.7-9/VGAM/man/vglm-class.Rd | 1
VGAM-0.7-9/VGAM/man/vglm.Rd | 164 -
VGAM-0.7-9/VGAM/man/vglm.control.Rd | 154 -
VGAM-0.7-9/VGAM/man/waitakere.Rd | 3
VGAM-0.7-9/VGAM/man/weightsvglm.Rd | 1
VGAM-0.7-9/VGAM/man/wffc.P2star.Rd | 11
VGAM-0.7-9/VGAM/man/wffc.Rd | 59
VGAM-0.7-9/VGAM/man/wffc.indiv.Rd | 14
VGAM-0.7-9/VGAM/man/wffc.nc.Rd | 20
VGAM-0.7-9/VGAM/man/wffc.teams.Rd | 14
VGAM-0.7-9/VGAM/man/yip88.Rd | 17
VGAM-0.7-9/VGAM/man/zanegbinUC.Rd | 16
VGAM-0.7-9/VGAM/man/zanegbinomial.Rd | 4
VGAM-0.7-9/VGAM/man/zapoisUC.Rd | 3
VGAM-0.7-9/VGAM/man/zapoisson.Rd | 8
VGAM-0.7-9/VGAM/man/zero.Rd | 1
VGAM-0.7-9/VGAM/man/zetaUC.Rd |only
VGAM-0.7-9/VGAM/man/zibinomial.Rd | 31
VGAM-0.7-9/VGAM/man/zinegbinomial.Rd | 2
VGAM-0.7-9/VGAM/man/zipebcom.Rd | 20
VGAM-0.7-9/VGAM/man/zipfUC.Rd | 8
VGAM-0.7-9/VGAM/src/vgam.f | 106
286 files changed, 8484 insertions(+), 6912 deletions(-)
Author: S.C. Schmukle, F.D. Schoenbrodt and M.D. Back
Title: Social Relation Model (SRM) analyses for single round-robin
groups
Description: Social Relation Model (SRM) analysis for a single
Round-Robin group are performed. These analyses are either
based on one manifest variable, one latent construct measured
by two manifest variables, two manifest variables and their
bivariate relations, or two latent constructs each measured by
two manifest variables (in the last case, four Round-Robin
matrices have to be provided)
Diff between TripleR versions 0.1 dated 2009-06-02 and 0.1.1 dated 2009-06-16
DESCRIPTION | 8 +- R/RR.r | 16 +--- data/liking_a.tab | 110 ++++++++++++++-------------- data/liking_b.tab | 110 ++++++++++++++-------------- data/metaliking_a.tab | 110 ++++++++++++++-------------- data/metaliking_b.tab | 110 ++++++++++++++-------------- man/RR.Rd | 190 ++++++++++++++++++++++++------------------------- man/TripleR-package.Rd | 60 +++++++-------- 8 files changed, 356 insertions(+), 358 deletions(-)
Author: Matthias Graser
Title: EM-Algorithm for Jump Diffusion processes
Description: Calculates parameters for Jump Diffusion processes via
EM-Algorithm. The jumps-times are considered to be bernoulli
distributed with normally distributed jump-sizes.
Diff between EMJumpDiffusion versions 1.4 dated 2009-05-06 and 1.4.1 dated 2009-06-16
DESCRIPTION | 6 +++--- R/EMjump.R | 1 + man/EMJumpDiffusion-package.Rd | 2 +- 3 files changed, 5 insertions(+), 4 deletions(-)
More information about EMJumpDiffusion at CRAN
Permanent link
Author: Denis White
Diff between diamonds versions 1.0-4 dated 2007-10-27 and 1.0-5 dated 2009-06-16
Title: Analysis and sampling grids from diamond partitions
Description: Functions for illustrating aperture-4 diamond partitions
in the plane, or on the surface of an octahedron or
icosahedron, for use as analysis or sampling grids.
diamonds-1.0-4/diamonds/INDEX |only
diamonds-1.0-5/diamonds/DESCRIPTION | 14 +++++++++-----
diamonds-1.0-5/diamonds/R/diamonds.R | 3 +++
3 files changed, 12 insertions(+), 5 deletions(-)
Author: Christian Buchta and Michael Hahsler
Title: Mining frequent sequences
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Diff between arulesSequences versions 0.1-6 dated 2009-04-27 and 0.1-8 dated 2009-06-15
CHANGELOG | 5 +++++ DESCRIPTION | 8 ++++---- R/10timed.R | 1 + 3 files changed, 10 insertions(+), 4 deletions(-)
More information about arulesSequences at CRAN
Permanent link
Author: Jeffrey A. Ryan, Josh M. Ulrich
Title: Extensible Time Series
Description: Provide for uniform handling of R's different time-based
data classes by extending zoo, maximizing native format
information preservation and allowing for user level
customization and extension, while simplifying cross-class
interoperability.
Diff between xts versions 0.6-5 dated 2009-05-13 and 0.6-6 dated 2009-06-14
DESCRIPTION | 8 NAMESPACE | 6 R/Ops.xts.R | 13 R/split.R |only R/xts.R | 6 R/zoo.R | 18 - R/zzz.R | 8 inst/doc/xts.pdf | 818 ++++++++++++++++++++++++++----------------------------- man/split.Rd |only 9 files changed, 432 insertions(+), 445 deletions(-)
Author: Fortran code by R. J. Renka. R functions by Albrecht Gebhardt
Diff between tripack versions 1.2-11 dated 2007-10-09 and 1.3-2 dated 2009-06-14
Title: Triangulation of irregularly spaced data
Description: A constrained two-dimensional Delaunay triangulation
package
tripack-1.2-11/tripack/COPYING |only
tripack-1.2-11/tripack/src-c |only
tripack-1.3-2/tripack/ChangeLog | 62 +++++-----
tripack-1.3-2/tripack/DESCRIPTION | 22 ++-
tripack-1.3-2/tripack/INDEX | 5
tripack-1.3-2/tripack/LICENSE |only
tripack-1.3-2/tripack/R/circles.R |only
tripack-1.3-2/tripack/R/on.convex.hull.R | 1
tripack-1.3-2/tripack/R/plot.tri.R | 12 +-
tripack-1.3-2/tripack/R/plot.voronoi.R | 2
tripack-1.3-2/tripack/R/voronoi.mosaic.R | 18 +--
tripack-1.3-2/tripack/man/add.constraint.Rd | 2
tripack-1.3-2/tripack/man/circles.Rd |only
tripack-1.3-2/tripack/man/convex.hull.Rd | 2
tripack-1.3-2/tripack/man/in.convex.hull.Rd | 2
tripack-1.3-2/tripack/man/neighbours.Rd | 2
tripack-1.3-2/tripack/man/on.convex.hull.Rd | 2
tripack-1.3-2/tripack/man/plot.tri.Rd | 5
tripack-1.3-2/tripack/man/plot.voronoi.Rd | 2
tripack-1.3-2/tripack/man/print.summary.tri.Rd | 2
tripack-1.3-2/tripack/man/print.summary.voronoi.Rd | 2
tripack-1.3-2/tripack/man/print.tri.Rd | 2
tripack-1.3-2/tripack/man/print.voronoi.Rd | 2
tripack-1.3-2/tripack/man/summary.tri.Rd | 2
tripack-1.3-2/tripack/man/summary.voronoi.Rd | 2
tripack-1.3-2/tripack/man/tri.Rd | 2
tripack-1.3-2/tripack/man/tri.find.Rd | 4
tripack-1.3-2/tripack/man/tri.mesh.Rd | 2
tripack-1.3-2/tripack/man/triangles.Rd | 2
tripack-1.3-2/tripack/man/voronoi.Rd | 3
tripack-1.3-2/tripack/man/voronoi.findrejectsites.Rd | 2
tripack-1.3-2/tripack/src/awvor.f |only
tripack-1.3-2/tripack/src/dsos.f |only
tripack-1.3-2/tripack/src/func.f |only
tripack-1.3-2/tripack/src/inhull.f | 111 +++++++------------
tripack-1.3-2/tripack/src/init.c |only
tripack-1.3-2/tripack/src/tripack.h |only
tripack-1.3-2/tripack/src/voronoi.f | 7 -
38 files changed, 144 insertions(+), 140 deletions(-)
Author: Thomas Scheike with contributions from Torben Martinussen and
Jeremy Silver
Title: timereg package for Flexible regression models for survival
data.
Description: Programs for Martinussen and Scheike (2006), `Dynamic
Regression Models for Survival Data', Springer Verlag. Plus
more recent developments. Additive survival model,
semiparmetric proportional odds model, cumulative residuals,
excess risk models and more. Flexible competing risks
regression including GOF-tests.
Diff between timereg versions 1.2-0 dated 2009-06-08 and 1.2-2 dated 2009-06-14
DESCRIPTION | 6 +++--- R/predict-timereg.r | 4 ++-- 2 files changed, 5 insertions(+), 5 deletions(-)
Author: Susanne Heim, with support from Paul Eilers, Thomas Kneib, and
Michael Kobl
Title: 2d and 3d Space-Varying Coefficient Models
Description: 2d and 3d space-varying coefficient models are fitted to
regular grid data using either a full B-spline tensor product
approach or a sequential approximation. The latter one is
computationally more efficient. Resolution increment is
enabled.
Diff between svcm versions 0.1.1 dated 2007-04-19 and 0.1.2 dated 2009-06-14
DESCRIPTION | 18 ++++++++++++------ inst/CITATION | 19 +++++++++++-------- man/svcm-package.Rd | 2 +- 3 files changed, 24 insertions(+), 15 deletions(-)
Author: Jeffrey A. Ryan
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial
trading strategies
Diff between quantmod versions 0.3-9 dated 2009-06-08 and 0.3-10 dated 2009-06-14
DESCRIPTION | 8 ++++---- R/adjustOHLC.R | 2 +- R/getSymbols.R | 7 +++++-- man/getSymbols.yahoo.Rd | 8 +++++++- 4 files changed, 17 insertions(+), 8 deletions(-)
Author: Reinhold Hatzinger
Title: Utilities to fit paired comparison models for preferences
Description: Generates design matrix for analysing real paired
comparisons and derived paired comparison data (Likert type
items / ratings or rankings) using a loglinear approach. Fits
loglinear Bradley-Terry model (LLBT) exploting an eliminate
feature. Computes pattern models for paired comparisons,
rankings, and ratings. Some treatment of missing values (MCAR
and MNAR).
Diff between prefmod versions 0.8-15 dated 2009-06-02 and 0.8-16 dated 2009-06-14
DESCRIPTION | 8 ++++---- NAMESPACE | 2 +- R/patt.worth.R | 11 ++++++----- man/plotworth.Rd | 2 +- man/prefmod-package.Rd | 4 ++-- 5 files changed, 14 insertions(+), 13 deletions(-)
Author: Jim Lemon,Ben Bolker,Sander Oom, Eduardo Klein,Barry
Rowlingson, Hadley Wickham,Anupam Tyagi, Olivier
Eterradossi,Gabor Grothendieck, Michael Toews,John Kane,Mike
Cheetham, Rolf Turner,Carl Witthoft,Julian Stander, Thomas
Petzoldt,Remko Duursma,Elisa Biancotto, Ofir Levy
Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling
functions.
Diff between plotrix versions 2.6 dated 2009-05-24 and 2.6-1 dated 2009-06-14
DESCRIPTION | 8 ++++---- NEWS | 9 +++++++++ R/gantt.R | 8 ++------ R/gap.barplot.R | 2 +- R/gap.plot.R | 32 +++++++++++++++++--------------- R/radial.plot.R | 42 +++++++++++++++++++++++++++++++++--------- R/twoord.plot.R | 4 +++- man/hierobarp.Rd | 2 +- man/radial.plot.Rd | 11 ++++++++--- man/twoord.plot.Rd | 3 ++- 10 files changed, 80 insertions(+), 41 deletions(-)
Author: Jonathan P. Weeks
Diff between plink versions 1.1-2 dated 2009-06-02 and 1.1-3 dated 2009-06-14
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a
nonequivalent groups common item design. The unidimensional
methods include the Mean/Mean, Mean/Sigma, Haebara, and
Stocking-Lord methods for dichotomous (1PL, 2PL and 3PL) and/or
polytomous (graded response, partial credit/generalized partial
credit, nominal, and multiple-choice model) items. The
multidimensional methods include the Reckase-Martineau method
and extensions of the Haebara and Stocking-Lord method using a
single dilation parameter, multiple dilation parameters, or the
Oshima, Davey, & Lee approach for multidimensional extensions
of all the unidimensional dichotomous and polytomous item
response models. The package also includes functions for
importing item and/or ability parameters from common IRT
software and ploting item characteristic/category curves or
surfaces and vector plots.
DESCRIPTION | 8 ++++----
R/plink.R | 46 ++++++++++++++++++++++++++++------------------
R/plot.R | 1 -
inst/CITATION | 4 ++--
inst/NEWS | 17 +++++++++++++++++
man/plink-methods.Rd | 26 +++++++++++++++++++-------
6 files changed, 70 insertions(+), 32 deletions(-)
Author: Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra
Taylor, Sandrine Dudoit
Title: Resampling-based multiple hypothesis testing
Description: Non-parametric bootstrap and permutation resampling-based
multiple testing procedures (including empirical Bayes methods)
for controlling the family-wise error rate (FWER), generalized
family-wise error rate (gFWER), tail probability of the
proportion of false positives (TPPFP), and false discovery rate
(FDR). Several choices of bootstrap-based null distribution
are implemented (centered, centered and scaled,
quantile-transformed). Single-step and step-wise methods are
available. Tests based on a variety of t- and F-statistics
(including t-statistics based on regression parameters from
linear and survival models as well as those based on
correlation parameters) are included. When probing hypotheses
with t-statistics, users may also select a potentially faster
null distribution which is multivariate normal with mean zero
and variance covariance matrix derived from the vector
influence function. Results are reported in terms of adjusted
p-values, confidence regions and test statistic cutoffs. The
procedures are directly applicable to identifying
differentially expressed genes in DNA microarray experiments.
Diff between multtest versions 2.0.0 dated 2009-05-10 and 2.1.1 dated 2009-06-14
DESCRIPTION | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-)
Author: Christopher Jackson
Diff between msm versions 0.9 dated 2009-06-10 and 0.9.1 dated 2009-06-14
Title: Multi-state Markov and hidden Markov models in continuous time
Description: Functions for fitting general continuous-time Markov and
hidden Markov multi-state models to longitudinal data. Both
Markov transition rates and the hidden Markov output process
can be modelled in terms of covariates. A variety of
observation schemes are supported, including processes observed
at arbitrary times, completely-observed processes, and censored
states.
ChangeLog | 9 ++++++++-
DESCRIPTION | 8 ++++----
inst/NEWS | 7 +++++++
inst/doc/msm-manual.pdf |binary
tests/simple.R | 8 ++++----
5 files changed, 23 insertions(+), 9 deletions(-)
Author: Kengo NAGASHIMA and Yasunori SATO
Title: Modified Maximum Contrast Method
Description: This package provides an implementation of modified
maximum contrast method. Current version supports function
mmcm.resamp that gives P-value for the modified maximum
contrast statistics by using a resampling based procedure.
Diff between mmcm versions 1.0-0 dated 2009-01-26 and 1.0-1 dated 2009-06-14
DESCRIPTION | 26 ++++++++++++++------------ NEWS | 1 + man/mmcm.Rd | 2 +- man/mmcm.resamp.Rd | 2 +- src/mmcm.resamp.c | 10 +++++----- src/mmcm.resamp.h | 14 +++----------- 6 files changed, 25 insertions(+), 30 deletions(-)
Author: Original by Joseph L. Schafer
Diff between mix versions 1.0-6 dated 2007-06-19 and 1.0-7 dated 2009-06-14
Title: Estimation/multiple Imputation for Mixed Categorical and
Continuous Data
Description: Estimation/multiple imputation programs for mixed
categorical and continuous data
ChangeLog |only
DESCRIPTION | 22 ++++----
src/mix.f | 163 +++++++++++++++++++++++++++++-------------------------------
3 files changed, 92 insertions(+), 93 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.07-3 dated 2009-06-10 and 0.07-4 dated 2009-06-14
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
DESCRIPTION | 8 ++++----
R/mi.pooled.R | 13 +++++++------
2 files changed, 11 insertions(+), 10 deletions(-)
Author: Richard Bourgon
Diff between intervals versions 0.12.0 dated 2009-06-08 and 0.12.1 dated 2009-06-14
Title: Tools for working with points and intervals
Description: Tools for working with and comparing sets of points and
intervals.
DESCRIPTION | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
Author: Olivier Briet
Diff between gsarima versions 0.0-1.1 dated 2009-02-23 and 0.0-2 dated 2009-06-14
Title: Two functions for Generalized SARIMA time series simulation
Description: Write SARIMA models in (finite) AR representation and
simulate generalized multiplicative seasonal autoregressive
moving average (time) series with Normal / Gaussian, Poisson or
negative binomial distribution.
DESCRIPTION | 21 +--
NAMESPACE | 3
R/arrep.R | 175 ++++++++++++++--------------
R/garsim.R | 301 ++++++++++++++++++++++++-------------------------
man/arrep.Rd | 1
man/garsim.Rd | 21 +++
man/gsarima-package.Rd |only
7 files changed, 275 insertions(+), 247 deletions(-)
Author: Michael Lawrence, John Verzani
Title: Toolkit implementation of gWidgets for RGtk2
Description: Port of gWidgets API to RGtk2
Diff between gWidgetsRGtk2 versions 0.0-51 dated 2009-03-03 and 0.0-52 dated 2009-06-14
ChangeLog | 9 +++++++++ DESCRIPTION | 12 +++++++----- R/gaction.R | 2 +- R/gcheckboxgroup.R | 2 +- R/gdialogs.R | 35 +++++++++++++++++++++++++++-------- R/gdroplist.R | 2 +- R/gedit.R | 2 +- R/gfile.R | 6 +++--- R/glabel.R | 2 +- R/gtext.R | 2 +- R/icons.R | 1 + 11 files changed, 53 insertions(+), 22 deletions(-)
Author: Arthur Allignol
Title: Empirical Transition Matrix
Description: Matrix of transition probabilities for any
time-inhomogeneous multistate model with finite state space
Diff between etm versions 0.4-0 dated 2009-04-14 and 0.4-3 dated 2009-06-14
ChangeLog | 24 +++++++++++++++++++++--- DESCRIPTION | 9 +++++---- NAMESPACE | 6 ++++-- R/clos.R |only R/etm.R | 9 +++++++-- R/plot.clos.etm.R |only R/print.clos.etm.R |only man/clos.Rd |only man/etm.Rd | 9 +++++++-- man/plot.clos.etm.Rd |only man/print.clos.etm.Rd |only src/los_etm.cc |only src/matrix.cc |only src/matrix.h |only 14 files changed, 44 insertions(+), 13 deletions(-)
Author: Vincent Arel-Bundock
Diff between countrycode versions 0.1 dated 2009-06-03 and 0.2 dated 2009-06-14
Title: Create and manipulate data frames that contain country names or
country coding schemes
Description: Standardizes country names, converts them into one of
seven coding schemes, assigns region descriptors, and generates
empty dyadic or country-year dataframes from the coding
schemes.
DESCRIPTION | 13 ++++++++-----
R/countrycode.R | 13 +------------
R/countryframe.R |only
data/countrycode_data.rda |binary
man/countrycode-package.Rd | 6 +++---
man/countrycode.Rd | 5 +++--
man/countrycode.nomatch.Rd | 4 ++--
man/countrycode_data.Rd | 17 ++++++-----------
man/countryframe.Rd |only
9 files changed, 23 insertions(+), 35 deletions(-)
Author: Rasmus E. Benestad
Diff between clim.pact versions 2.2-36 dated 2009-06-03 and 2.2-37 dated 2009-06-14
Title: Climate analysis and empirical-statistical downscaling (ESD)
package for monthly and daily data.
Description: The package contains R functions for retrieving data,
making climate analysis and downscaling of monthly mean and
daily mean global climate scenarios. (Windows-users may need to
obtain the 'ncdf' package from URL
'http://www.stats.ox.ac.uk/pub/RWin/' to get clim.pact to
work). The package is also described in the book
'Empirical-Statistical Downscaling
(http://www.worldscibooks.com/environsci/6908.html)
DESCRIPTION | 8 ++++----
R/catFields.R | 18 +++++++++---------
R/eof.R | 10 +++++++---
R/objDS.R | 4 ++--
R/retrieve.nc.R | 19 ++++++++++++++-----
man/catFields.Rd | 5 +++--
6 files changed, 39 insertions(+), 25 deletions(-)
Author: Tom Radivoyevitch
Title: Combinatorially Complex Equilibrium Model Selection
Description: Dissociation constants of quasi-equilibriums of enzymes
and protein-ligand binding equilibriums in general are
systematically scanned though possibilities of being infinity
and/or equal to others. The automatically generated space of
models is then fitted to data.
Diff between ccems versions 1.02 dated 2009-03-21 and 1.03 dated 2009-06-14
ccems-1.02/ccems/inst/papers/RX/fig4dens.r |only ccems-1.02/ccems/inst/papers/RX/fig5fit.r |only ccems-1.02/ccems/inst/papers/TK1/TK1.r |only ccems-1.03/ccems/DESCRIPTION | 10 - ccems-1.03/ccems/NAMESPACE | 2 ccems-1.03/ccems/R/ems.R | 50 +++-- ccems-1.03/ccems/R/fitModel.R | 31 ++- ccems-1.03/ccems/R/mkEq.R | 1 ccems-1.03/ccems/R/mkGrids.R | 108 ++++++++++-- ccems-1.03/ccems/R/mkHTML.R | 13 - ccems-1.03/ccems/R/mkModel.R | 36 ++-- ccems-1.03/ccems/R/mkSpurs.R | 54 +++++- ccems-1.03/ccems/R/mkg.R | 116 ++++++------- ccems-1.03/ccems/R/simulateData.R | 126 +++++++++++---- ccems-1.03/ccems/R/testgC.R | 2 ccems-1.03/ccems/data/TK1.rda |binary ccems-1.03/ccems/inst/doc/ccems.pdf |binary ccems-1.03/ccems/inst/doc/versionNotes.txt | 15 + ccems-1.03/ccems/inst/papers/BMCsysBio08/RtCcems.R | 4 ccems-1.03/ccems/inst/papers/BMCsysBio08/massEstimated.r |only ccems-1.03/ccems/inst/papers/BMCsysBio08/plotRt.R |only ccems-1.03/ccems/inst/papers/RX/RX.r | 89 +++------- ccems-1.03/ccems/inst/papers/RX/attic |only ccems-1.03/ccems/inst/papers/RX/fig4n5AICdens.r |only ccems-1.03/ccems/inst/papers/RX/fig6plotP1s.r |only ccems-1.03/ccems/inst/papers/RX/fig7n8fitsExtrap.r |only ccems-1.03/ccems/inst/papers/RX/figS2plotP1s.r |only ccems-1.03/ccems/inst/papers/RX/fit2Pgrids.r |only ccems-1.03/ccems/inst/papers/RX/genHillFit.r |only ccems-1.03/ccems/inst/papers/RX/mkGridsOnly2P5.r |only ccems-1.03/ccems/inst/papers/TK1/LA3fits2lit.r |only ccems-1.03/ccems/inst/papers/TK1/MAsSlopesSSEsF4n6.r |only ccems-1.03/ccems/inst/papers/TK1/attic |only ccems-1.03/ccems/inst/papers/TK1/fit3Ps2litF7.r |only ccems-1.03/ccems/inst/papers/TK1/fullFits2litCV.r |only ccems-1.03/ccems/inst/papers/TK1/hillFits.r |only ccems-1.03/ccems/inst/papers/TK1/hillFits2simF5.r |only ccems-1.03/ccems/inst/papers/TK1/mkAdaptExpDes.r |only ccems-1.03/ccems/inst/papers/TK1/mkFullFactExpDes.r |only ccems-1.03/ccems/inst/papers/TK1/mkOuts.r |only ccems-1.03/ccems/inst/papers/TK1/physioExtrapETF8.r |only ccems-1.03/ccems/inst/papers/TK1/simFullFitFull.r |only ccems-1.03/ccems/inst/papers/TK1/viewExpDesResults.r |only ccems-1.03/ccems/man/TK1.Rd | 81 +++++---- ccems-1.03/ccems/man/ccems-package.Rd | 12 - ccems-1.03/ccems/man/ems.Rd | 44 ++++- ccems-1.03/ccems/man/mkGrids.Rd | 42 +++-- ccems-1.03/ccems/man/mkModel.Rd | 26 ++- ccems-1.03/ccems/man/mkSpurs.Rd | 33 ++- ccems-1.03/ccems/man/mkg.Rd | 6 ccems-1.03/ccems/man/simulateData.Rd | 6 51 files changed, 594 insertions(+), 313 deletions(-)
Author: Michael Friendly and John Fox
Title: Generalized Canonical Discriminant Analysis
Description: Functions for computing and graphing canonical
discriminant analyses.
Diff between candisc versions 0.5-13 dated 2009-02-03 and 0.5-15 dated 2009-06-14
DESCRIPTION | 35 +++++++++++++++++++---------------- NAMESPACE | 3 ++- R/dataIndex.R |only R/plot.candisc.R | 9 ++++++--- inst/CHANGES | 5 +++++ man/candisc-package.Rd | 9 +++++++-- man/candisc.Rd | 14 +++++++++++--- man/dataIndex.Rd |only 8 files changed, 50 insertions(+), 25 deletions(-)
Author: Marco Scutari
Title: Bayesian network structure learning
Description: Bayesian network structure learning via constraint-based
(also known as 'conditional independence') and score-based
algorithms. This package implements the Grow-Shrink (GS)
algorithm, the Incremental Association (IAMB) algorithm, the
Interleaved-IAMB (Inter-IAMB) algorithm, the Fast-IAMB
(Fast-IAMB) algorithm, the Max-Min Parents and Children (MMPC)
algorithm and the Hill-Climbing (HC) greedy search algorithm
for both discrete and Gaussian networks, along with many score
functions and conditional independence tests. Some utility
functions (model comparison and manipulation, random data
generation, arc orientation testing, simple and advanced plots)
are also included.
Diff between bnlearn versions 1.4 dated 2009-05-05 and 1.4.1 dated 2009-06-14
DESCRIPTION | 8 ++++---- man/00.bnlearn-package.Rd | 14 +++++++------- 2 files changed, 11 insertions(+), 11 deletions(-)
Author: Bettina Gruen
Title: Bayesian Mixture Models with JAGS
Description: Bayesian mixture models of univariate Gaussian
distributions using JAGS
Diff between bayesmix versions 0.6-0 dated 2008-05-20 and 0.6-1 dated 2009-06-14
DESCRIPTION | 17 ++++++++++------- R/BMMmodel.R | 1 + 2 files changed, 11 insertions(+), 7 deletions(-)
Author: S original by David W. Scott R port by Albrecht Gebhardt
Diff between ash versions 1.0-10 dated 2008-02-04 and 1.0-11 dated 2009-06-14
Title: David Scott's ASH routines
Description: David Scotts ASH routines
ChangeLog | 12 ++++++++----
DESCRIPTION | 15 +++++++++------
R/ash.R | 23 +++++++++++++++++++++++
src/ash.f | 23 ++++++++++++++++++++++-
4 files changed, 62 insertions(+), 11 deletions(-)
Author: Fortran code by H. Akima R port by Albrecht Gebhardt
Diff between akima versions 0.5-1 dated 2006-02-03 and 0.5-2 dated 2009-06-14
Title: Interpolation of irregularly spaced data
Description: Linear or cubic spline interpolation for irregular gridded
data
akima-0.5-1/akima/src-c |only
akima-0.5-2/akima/ChangeLog | 10 ++++++----
akima-0.5-2/akima/DESCRIPTION | 21 ++++++++++++---------
akima-0.5-2/akima/INDEX | 4 ++--
akima-0.5-2/akima/LICENSE |only
akima-0.5-2/akima/src/init.c | 16 ++++++++++++++++
6 files changed, 36 insertions(+), 15 deletions(-)
Author: Michael Lawrence
Diff between RGtk2 versions 2.12.12 dated 2009-06-02 and 2.12.13 dated 2009-06-14
Title: R bindings for Gtk 2.8.0 and above
Description: Facilities in the R language for programming graphical
interfaces using Gtk, the Gimp Tool Kit.
DESCRIPTION | 6
configure | 1729 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++-
configure.in | 2
src/Makevars | 2
src/Rgtk.c | 1
5 files changed, 1731 insertions(+), 9 deletions(-)
Author: Henrik Bengtsson
Diff between R.huge versions 0.1.7 dated 2009-06-08 and 0.1.8 dated 2009-06-14
Title: Methods for accessing huge amounts of data [DEPRECATED]
Description: THIS PACKAGE HAS BEEN DEPRECATED. Do not start building
new projects based on it. The main usage of it was inside the
aroma.affymetrix package. (The package currently provides a
class representing a matrix where the actual data is stored in
a binary format on the local file system. This way the size
limit of the data is set by the file system and not the
memory.)
DESCRIPTION | 24 ++++++++++++------------
R/999.package.R | 5 +++--
inst/NEWS | 5 +++++
man/AbstractFileArray.Rd | 2 +-
man/FileMatrix.Rd | 2 +-
man/FileVector.Rd | 2 +-
man/R.huge-package.Rd | 5 +++--
7 files changed, 26 insertions(+), 19 deletions(-)
Author: Elizabeth Freeman, Tracey Frescino
Title: Creates Random Forest and Stochastic Gradient Boosting Models,
and applies them to GIS .img files to build detailed prediction
maps.
Description: This package will create sophisticated models of training
data and validate the models with an independant test set,
cross validation, or in the case of Random Forest Models, with
Out OF Bag (OOB) predictions on the training data. It will
creat graphs and tables of the model validation results. It
will apply these models to GIS .img files of predictors to
create detailed prediction surfaces. It will handle large
predictor files for map making, by reading in the .img files in
chuncks, and output to the .txt file the prediction for each
data chunk, before reading the next chenk of data.
Diff between ModelMap versions 1.1.11 dated 2009-03-28 and 1.1.13 dated 2009-06-14
DESCRIPTION | 8 ++++---- R/model.map.R | 4 ++-- inst/CHANGELOG | 10 +++++++++- man/ModelMap-package.Rd | 4 ++-- 4 files changed, 17 insertions(+), 9 deletions(-)
Author: Volodymyr Melnykov
Diff between MixSim versions 0.1-03 dated 2009-04-26 and 0.1-04 dated 2009-06-14
Title: Simulating Data to Study Performance of Clustering Algorithms.
Description: MixSim
DESCRIPTION | 8 ++++----
INDEX | 2 +-
fixed.txt | 4 ++--
log.txt | 3 +++
src/libOverlap.c | 2 +-
src/libQF.c | 1 -
6 files changed, 11 insertions(+), 9 deletions(-)
Author: Markus Helbig
Diff between JGR versions 1.6-6 dated 2009-06-09 and 1.6-7 dated 2009-06-14
Title: JGR - Java Gui for R
Description: Java GUI for R - cross-platform, universal and unified
Graphical User Interface for R. For full functionality on
Windows and Mac OS X JGR requires a start application which
depends on your OS. This can be downloaded from JGR's website:
http://www.rosuda.org/JGR
DESCRIPTION | 4 ++--
NEWS | 3 +++
R/JGR.R | 4 ++--
inst/java/JGR.jar |binary
4 files changed, 7 insertions(+), 4 deletions(-)
Author: Lin et al.
Title: Testing for monotonic relationship between gene expression and
doses in a microarray experiment.
Description: Several testing procedures including the global likelihood
ratio test (Bartholomew, 1961), Williams (1971, 1972), Marcus
(1976), M (Hu et al. 2005) and the modified M (Lin et al. 2007)
are used to test for the monotonic trend in gene expression
with respect to doses. BH (Benjamini and Hochberg 1995) and BY
(Benjamini and Yekutilie 2004) FDR controlling procedures are
applied to adjust the raw p-values obtained from the
permutations.
Diff between IsoGene versions 1.0-13 dated 2009-05-27 and 1.0-14 dated 2009-06-14
DESCRIPTION | 8 ++++---- R/Isofudge.R | 14 ++++++++++---- man/IsoTestSAM.Rd | 4 ++-- 3 files changed, 16 insertions(+), 10 deletions(-)
Author: Jeffrey A. Ryan
Title: R API to Interactive Brokers Trader Workstation
Description: Provides native Raccess to Interactive Brokers Trader
Workstation API.
Diff between IBrokers versions 0.2-1 dated 2009-05-13 and 0.2-2 dated 2009-06-14
DESCRIPTION | 8 NAMESPACE | 1 R/processMsg.R | 3 R/readBin.R |only R/reqContractDetails.R | 3 R/reqHistoricalData.R | 61 + R/twsConnect.R | 2 R/zzz.R | 2 inst/doc/IBrokers.pdf | 895 ++++++++++++++-------------- inst/doc/RealTime.Rnw | 30 inst/doc/RealTime.pdf | 1469 +++++++++++++++++++++++++---------------------- man/reqHistoricalData.Rd | 30 man/twsConnect.Rd | 11 13 files changed, 1336 insertions(+), 1179 deletions(-)
Author: Ravi Varadhan
Title: Solving and Optimizing Large-Scale Nonlinear Systems
Description: Barzilai-Borwein spectral methods for solving nonlinear
system of equations, and for optimizing nonlinear objective
functions subject to simple constraints. A tutorial style
introduction to this package is available in a vignette on the
CRAN download page or, when the package is loaded in an R
session, with vignette("BB").
Diff between BB versions 2008.11-1 dated 2008-11-26 and 2009.6-1 dated 2009-06-14
BB-2008.11-1/BB/Rplots.pdf |only BB-2009.6-1/BB/DESCRIPTION | 28 +- BB-2009.6-1/BB/NAMESPACE | 5 BB-2009.6-1/BB/NEWS | 25 ++ BB-2009.6-1/BB/R/BBoptim.R |only BB-2009.6-1/BB/R/BBsolve.R |only BB-2009.6-1/BB/R/dfsane.R | 18 + BB-2009.6-1/BB/R/multiStart.R |only BB-2009.6-1/BB/R/sane.R | 18 + BB-2009.6-1/BB/R/spg.R | 39 +++ BB-2009.6-1/BB/demo/00Index | 1 BB-2009.6-1/BB/demo/multiStart.R |only BB-2009.6-1/BB/demo/nlmin.R | 39 ++- BB-2009.6-1/BB/demo/nlsolve.R | 21 +- BB-2009.6-1/BB/inst/doc/BB.Stex | 323 ++++++++++++++++++++----------- BB-2009.6-1/BB/inst/doc/BB.pdf |binary BB-2009.6-1/BB/man/BB-package.Rd | 17 + BB-2009.6-1/BB/man/BBoptim.Rd |only BB-2009.6-1/BB/man/BBsolve.Rd |only BB-2009.6-1/BB/man/dfsane.Rd | 4 BB-2009.6-1/BB/man/multiStart.Rd |only BB-2009.6-1/BB/man/sane.Rd | 7 BB-2009.6-1/BB/man/spg.Rd | 70 ++++-- BB-2009.6-1/BB/tests/BBsolve.R |only BB-2009.6-1/BB/tests/broyds.R | 9 BB-2009.6-1/BB/tests/broydt2.R | 9 BB-2009.6-1/BB/tests/ccreact.R | 9 BB-2009.6-1/BB/tests/expo3.R | 10 BB-2009.6-1/BB/tests/extrosbk.R | 9 BB-2009.6-1/BB/tests/multiStartBrownln.R |only BB-2009.6-1/BB/tests/multiStartHDP.R |only BB-2009.6-1/BB/tests/multiStartNRC.R |only BB-2009.6-1/BB/tests/multiStartTroesch.R |only BB-2009.6-1/BB/tests/trigexp.R | 9 BB-2009.6-1/BB/tests/troesch.R | 9 35 files changed, 477 insertions(+), 202 deletions(-)
Author: Douglas Bates
Diff between Matrix versions 0.999375-28 dated 2009-06-09 and 0.999375-29 dated 2009-06-11
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
ChangeLog | 19
DESCRIPTION | 8
R/dgCMatrix.R | 4
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 1550 ++++++++++++++++------------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/po/de/LC_MESSAGES/Matrix.mo |binary
inst/po/de/LC_MESSAGES/R-Matrix.mo |binary
inst/po/en@quot/LC_MESSAGES/Matrix.mo |binary
po/Matrix.pot | 12
po/R-de.po | 42
po/de.po | 43
po/en@quot.po | 14
src/Mutils.c | 6
src/dgCMatrix.c | 103 +-
src/dgCMatrix.h | 2
src/init.c | 2
19 files changed, 910 insertions(+), 895 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.07-2 dated 2009-05-10 and 0.07-3 dated 2009-06-10
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 10 ++++++++++
DESCRIPTION | 8 ++++----
R/display.R | 17 +++++++++--------
R/mi.R | 2 +-
R/mi.binary.R | 5 +++--
R/mi.continuous.R | 4 +++-
R/mi.count.R | 4 +++-
man/mi.Rd | 2 +-
8 files changed, 34 insertions(+), 18 deletions(-)
Author: Jun Yan
Diff between copula versions 0.8-3 dated 2009-01-23 and 0.8-7 dated 2009-06-10
Title: Multivariate dependence with copulas
Description: Classes (S4) of commonly used copulas including elliptical
(normal and t), Archimedean (Clayton, Gumbel, Frank, and
Ali-Mikhail-Haq), extreme value (Gumbel, Husler-Reiss,
Galambos, and t-EV), and other families (Plackett and
Farlie-Gumbel-Morgenstern). Methods for density, distribution,
random number generation, bivariate dependence measures,
perspective and contour plots. Functions for fitting copula
models with variance estimate. Independence tests among random
variables and random vectors. Serial independence tests for
univariate and multivariate continuous time series.
Goodness-of-fit tests for copulas based on multipliers and on
the parametric bootstrap.
copula-0.8-3/copula/R/copula.R |only
copula-0.8-3/copula/R/empcopsm.R |only
copula-0.8-3/copula/R/empcoptest.R |only
copula-0.8-3/copula/R/gofCopula.R |only
copula-0.8-3/copula/inst/docs/mathnb/amhExpr.R |only
copula-0.8-3/copula/inst/docs/mathnb/claytonExpr.R |only
copula-0.8-3/copula/inst/docs/mathnb/frankExpr.R |only
copula-0.8-3/copula/inst/docs/mathnb/gumbelExpr.R |only
copula-0.8-3/copula/inst/docs/mathnb/plackettExpr.R |only
copula-0.8-3/copula/src/dgamma.f |only
copula-0.8-3/copula/src/sgen.f |only
copula-0.8-7/copula/ChangeLog | 9
copula-0.8-7/copula/DESCRIPTION | 34
copula-0.8-7/copula/NAMESPACE | 19
copula-0.8-7/copula/R/Classes.R | 65
copula-0.8-7/copula/R/Copula.R |only
copula-0.8-7/copula/R/amhCopula.R | 2
copula-0.8-7/copula/R/asymCopula.R |only
copula-0.8-7/copula/R/claytonCopula.R | 17
copula-0.8-7/copula/R/claytonExpr.R | 3659 ++-----------------
copula-0.8-7/copula/R/derCdfPdf.R | 20
copula-0.8-7/copula/R/ellipCopula.R | 2
copula-0.8-7/copula/R/evCopula.R | 67
copula-0.8-7/copula/R/evTests.R |only
copula-0.8-7/copula/R/exchTests.R |only
copula-0.8-7/copula/R/fgmCopula.R | 3
copula-0.8-7/copula/R/fitCopula.R | 23
copula-0.8-7/copula/R/frankCopula.R | 9
copula-0.8-7/copula/R/frankExpr.R | 662 ---
copula-0.8-7/copula/R/galambosCopula.R | 15
copula-0.8-7/copula/R/gofEVTests.R |only
copula-0.8-7/copula/R/gofTests.R |only
copula-0.8-7/copula/R/gumbelCopula.R | 9
copula-0.8-7/copula/R/gumbelExpr.R | 828 ----
copula-0.8-7/copula/R/huslerReissCopula.R | 15
copula-0.8-7/copula/R/indepCopula.R | 10
copula-0.8-7/copula/R/indepTests.R |only
copula-0.8-7/copula/R/plackettCopula.R | 1
copula-0.8-7/copula/R/skewNormalCopula.R | 2
copula-0.8-7/copula/R/stable.R | 37
copula-0.8-7/copula/R/sysdata.rda |binary
copula-0.8-7/copula/R/tCopula.R | 2
copula-0.8-7/copula/R/tawnCopula.R |only
copula-0.8-7/copula/R/tawnExpr.R |only
copula-0.8-7/copula/R/tevCopula.R |only
copula-0.8-7/copula/inst/docs/mathnb/check2Ivan.R | 14
copula-0.8-7/copula/inst/docs/mathnb/check2Ivan.Rout | 368 +
copula-0.8-7/copula/inst/docs/mathnb/exprPrep.R | 32
copula-0.8-7/copula/inst/docs/mathnb/exprPrep.Rout | 38
copula-0.8-7/copula/inst/docs/obsolete/dgamma.f |only
copula-0.8-7/copula/inst/docs/obsolete/sgen.f |only
copula-0.8-7/copula/man/Copula.Rd | 10
copula-0.8-7/copula/man/assocMeasures.Rd | 11
copula-0.8-7/copula/man/copula-internal.Rd |only
copula-0.8-7/copula/man/ellipCopula.Rd | 4
copula-0.8-7/copula/man/generator-methods.Rd | 9
copula-0.8-7/copula/man/gofCopula.Rd | 64
copula-0.8-7/copula/man/indepCopula-class.Rd | 19
copula-0.8-7/copula/src/Anfun.c |only
copula-0.8-7/copula/src/Anfun.h |only
copula-0.8-7/copula/src/evtest.c |only
copula-0.8-7/copula/src/exchtest.c |only
copula-0.8-7/copula/src/gof.c | 411 --
copula-0.8-7/copula/src/try.c |only
64 files changed, 1385 insertions(+), 5105 deletions(-)
Author: Paul Gilbert
Diff between TSpadi versions 2009.3-2 dated 2009-03-25 and 2009.6-1 dated 2009-06-10
Title: Time Series Database Interface extensions for PADI Time Series
Server
Description: Provides methods for generics in the TSdbi package to
connect through a protocol for application database interface
(PADI) to a time series database (e.g. Fame).
TSpadi-2009.3-2/TSpadi/Makefile |only
TSpadi-2009.3-2/TSpadi/Rbuildignore |only
TSpadi-2009.3-2/TSpadi/exec/getpadi |only
TSpadi-2009.3-2/TSpadi/exec/getpwuid |only
TSpadi-2009.3-2/TSpadi/exec/objectinfo |only
TSpadi-2009.3-2/TSpadi/exec/padi_simple_svc |only
TSpadi-2009.3-2/TSpadi/exec/putpadi |only
TSpadi-2009.3-2/TSpadi/exec/x11arima |only
TSpadi-2009.3-2/TSpadi/tests |only
TSpadi-2009.6-1/TSpadi/DESCRIPTION | 18 ++----
TSpadi-2009.6-1/TSpadi/NEWS | 20 +++++-
TSpadi-2009.6-1/TSpadi/R/TSdbiMethods.R | 5 +
TSpadi-2009.6-1/TSpadi/inst/doc/TSpadiFame.pdf |binary
TSpadi-2009.6-1/TSpadi/src/Makefile | 73 +++++++++++--------------
14 files changed, 60 insertions(+), 56 deletions(-)
Author: Christopher Jackson
Diff between msm versions 0.8.2 dated 2009-04-14 and 0.9 dated 2009-06-10
Title: Multi-state Markov and hidden Markov models in continuous time
Description: Functions for fitting general continuous-time Markov and
hidden Markov multi-state models to longitudinal data. Both
Markov transition rates and the hidden Markov output process
can be modelled in terms of covariates. A variety of
observation schemes are supported, including processes observed
at arbitrary times, completely-observed processes, and censored
states.
msm-0.8.2/msm/inst/doc/Rplots.pdf |only
msm-0.9/msm/ChangeLog | 59 +++++++++++++
msm-0.9/msm/DESCRIPTION | 10 +-
msm-0.9/msm/R/boot.R | 8 -
msm-0.9/msm/R/msm.R | 23 +++--
msm-0.9/msm/R/outputs.R | 162 +++++++++++++++++++++++++-----------
msm-0.9/msm/R/pearson.R | 12 ++
msm-0.9/msm/inst/NEWS | 28 ++++++
msm-0.9/msm/inst/doc/msm-manual.pdf |binary
msm-0.9/msm/man/ematrix.msm.Rd | 3
msm-0.9/msm/man/hmm-dists.Rd | 4
msm-0.9/msm/man/lrtest.msm.Rd | 4
msm-0.9/msm/man/msm.Rd | 5 -
msm-0.9/msm/man/pearson.msm.Rd | 28 ++++--
msm-0.9/msm/man/plot.survfit.msm.Rd | 4
msm-0.9/msm/man/pmatrix.msm.Rd | 11 ++
msm-0.9/msm/man/totlos.msm.Rd | 8 +
msm-0.9/msm/src/doc/msm-manual.Rnw | 81 ++++++------------
msm-0.9/msm/src/lik.c | 19 ++--
msm-0.9/msm/src/msm.h | 1
msm-0.9/msm/src/pijt.c | 5 -
msm-0.9/msm/tests/Rplots.pdf |only
msm-0.9/msm/tests/deriv.R | 2
msm-0.9/msm/tests/pci.R | 18 ++--
msm-0.9/msm/tests/simple.R | 2
25 files changed, 331 insertions(+), 166 deletions(-)
More information about longitudinalData at CRAN
Permanent link
Author: Michael J. Kane and John W. Emerson
Title: Manage massive matrices in R using C++, with support for shared
memory and memory-mapped files.
Description: Use C++ to create, store, access, and manipulate massive
matrices. Matrices may optionally be allocated to shared
memory and/or may use memory-mapped files.
Diff between bigmemory versions 3.7 dated 2009-06-03 and 3.8 dated 2009-06-10
bigmemory-3.7/bigmemory/src/CbigmemoRy.cpp |only bigmemory-3.7/bigmemory/src/CbigmemoRyLib.cpp |only bigmemory-3.8/bigmemory/DESCRIPTION | 8 +++---- bigmemory-3.8/bigmemory/R/bigmatrix.R | 25 ++++++++++++----------- bigmemory-3.8/bigmemory/configure.Rout | 2 - bigmemory-3.8/bigmemory/man/bigmemory-package.Rd | 4 +-- bigmemory-3.8/bigmemory/src/Cbigmemory.cpp |only bigmemory-3.8/bigmemory/src/CbigmemoryLib.cpp |only 8 files changed, 21 insertions(+), 18 deletions(-)
Author: Paul Gilbert
Diff between TSdbi versions 2009.1-1 dated 2009-01-15 and 2009.5-2 dated 2009-06-10
Title: Time Series Database Interface
Description: TSdbi provides a common interface to time series
databases. The objective is to define a standard interface so
users can retrieve time series data from various sources with a
simple, common, set of commands, and so programs can be written
to be portable with respect to the data source. The SQL
implementations also provide a database table design, so users
needing to set up a time series database have a reasonably
complete way to do this easily. The interface provides for a
variety of options with respect to the representation of time
series in R. There is also a (not yet well tested) mechanism to
handle multilingual data documentation.
TSdbi-2009.1-1/TSdbi/test |only
TSdbi-2009.1-1/TSdbi/tests |only
TSdbi-2009.5-2/TSdbi/DESCRIPTION | 31 ++++---
TSdbi-2009.5-2/TSdbi/NAMESPACE | 1
TSdbi-2009.5-2/TSdbi/NEWS | 21 ++++-
TSdbi-2009.5-2/TSdbi/R/TSdbi.R | 7 +
TSdbi-2009.5-2/TSdbi/R/TSquery.R | 129 ++++++++++++++++++-------------
TSdbi-2009.5-2/TSdbi/inst/doc/TSdbi.Stex | 14 ++-
TSdbi-2009.5-2/TSdbi/inst/doc/TSdbi.pdf |binary
TSdbi-2009.5-2/TSdbi/man/TSconnect.Rd | 1
TSdbi-2009.5-2/TSdbi/man/TSquery.Rd | 10 +-
11 files changed, 137 insertions(+), 77 deletions(-)
Author: Julien Barnier
Diff between rgrs versions 0.2-9 dated 2009-04-14 and 0.2-10 dated 2009-06-09
Title: Functions to make R usage in social sciences easier (in french)
Description: This package provides functions for beginners and social
sciences students or researchers. Currently it includes
functions for cross-tabulation, weighting, results export, and
maps plotting. The documentation and help pages are written in
french.
DESCRIPTION | 13 ++++++-------
R/carte.eff.R | 2 +-
R/carte.prop.R | 2 +-
R/carte.qual.R | 2 +-
4 files changed, 9 insertions(+), 10 deletions(-)
Author: Jichun Xie
Diff between qlspack versions 1.0-1 dated 2008-06-23 and 2.1 dated 2009-06-09
Title: Quasi Least Square Package
Description: QLS is a two-stage computational approach for estimation
of the correlation parameters within the framework of GEE. It
helps solving parameters in mean, scale, and correlation
structures for longitudinal data.
qlspack-1.0-1/qlspack/R/internal.r |only
qlspack-1.0-1/qlspack/R/qls.r |only
qlspack-1.0-1/qlspack/data/rat.txt |only
qlspack-2.1/qlspack/DESCRIPTION | 28 ++--
qlspack-2.1/qlspack/R/cor.estimates.R | 217 ++++++++++++++++++++++----------
qlspack-2.1/qlspack/R/internal.R |only
qlspack-2.1/qlspack/R/qls.R |only
qlspack-2.1/qlspack/R/zzz.R |only
qlspack-2.1/qlspack/data/rat.RData |only
qlspack-2.1/qlspack/man/qls-internal.Rd | 61 +++++---
qlspack-2.1/qlspack/man/qls.rd | 15 +-
qlspack-2.1/qlspack/man/rat.rd | 40 +++--
12 files changed, 234 insertions(+), 127 deletions(-)
Author: S original by Chris Fraley, U.Washington, Seattle. R port by
Fritz Leisch at TU-Wien; since 2003-12: Martin Maechler;
fdGPH(), fdSperio(), etc by Valderio Reisen and Artur Lemonte.
Title: Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
Description: Maximum likelihood estimation of the parameters of a
fractionally differenced ARIMA(p,d,q) model (Haslett and
Raftery, Appl.Statistics, 1989).
Diff between fracdiff versions 1.3-1 dated 2006-09-08 and 1.3-2 dated 2009-06-09
Calling | 10 + ChangeLog | 19 +++ DESCRIPTION | 23 ++-- Done |only Fotis_codes_MM.tgz |only NAMESPACE |only R/fd-methods.R | 8 + R/fracdiff.R | 239 ++++++++++++++++++++++++------------------ README | 51 -------- TODO |only codes_for_fracdiff |only codes_for_fracdiff.rar |only fotis_pap_long_memory_example |only man/fracdiff.Rd | 16 +- man/fracdiff.var.Rd | 17 +- src/fdcore.c | 6 - src/fdhess.c | 177 ++++++++++++++----------------- src/pmult.c | 4 tests/ex.R | 2 tests/ex.Rout.save | 13 +- 20 files changed, 309 insertions(+), 276 deletions(-)
Author: R-core members, Saikat DebRoy
Diff between foreign versions 0.8-35 dated 2009-05-05 and 0.8-36 dated 2009-06-09
Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase,
...
Description: Functions for reading and writing data stored by
statistical packages such as Minitab, S, SAS, SPSS, Stata,
Systat, ..., and for reading and writing .dbf (dBase) files.
ChangeLog | 17
DESCRIPTION | 8
inst/po/de |only
inst/po/en@quot/LC_MESSAGES/R-foreign.mo |binary
inst/po/en@quot/LC_MESSAGES/foreign.mo |binary
inst/po/fr/LC_MESSAGES/R-foreign.mo |binary
inst/po/fr/LC_MESSAGES/foreign.mo |binary
man/read.dbf.Rd | 6
po/R-de.po |only
po/R-en@quot.po | 77 ++
po/R-foreign.pot | 65 +-
po/R-fr.po | 113 ++--
po/de.po |only
po/en@quot.po | 372 ++++++-------
po/foreign.pot | 348 ++++++------
po/fr.po | 872 +++++++++++++------------------
16 files changed, 977 insertions(+), 901 deletions(-)
Author: Kurt Hornik
Title: Snowball Stemmers
Description: Snowball stemmers.
Diff between Snowball versions 0.0-5 dated 2009-04-30 and 0.0-6 dated 2009-06-09
Snowball-0.0-5/Snowball/inst/jar |only Snowball-0.0-6/Snowball/DESCRIPTION | 10 +++++----- Snowball-0.0-6/Snowball/R/zzz.R | 13 ++++++++----- Snowball-0.0-6/Snowball/inst/java |only 4 files changed, 13 insertions(+), 10 deletions(-)
Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Title: R/Weka interface
Description: An R interface to Weka (Version 3.6.1). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Both the R interface and Weka itself are
contained in the RWeka package. For more information on Weka
see http://www.cs.waikato.ac.nz/~ml/weka/.
Diff between RWeka versions 0.3-18 dated 2009-05-28 and 0.3-19 dated 2009-06-09
RWeka-0.3-18/RWeka/inst/jar |only RWeka-0.3-19/RWeka/CHANGELOG | 6 ++++++ RWeka-0.3-19/RWeka/DESCRIPTION | 10 +++++----- RWeka-0.3-19/RWeka/NAMESPACE | 3 ++- RWeka-0.3-19/RWeka/R/evaluate.R | 11 +++++++---- RWeka-0.3-19/RWeka/R/onLoad.R | 10 ++++++---- RWeka-0.3-19/RWeka/inst/java |only RWeka-0.3-19/RWeka/inst/po/en@quot/LC_MESSAGES/R-RWeka.mo |binary RWeka-0.3-19/RWeka/java/Makefile | 6 +++--- RWeka-0.3-19/RWeka/po/R-RWeka.pot | 7 +++++-- RWeka-0.3-19/RWeka/po/R-en@quot.po | 7 +++++-- 11 files changed, 39 insertions(+), 21 deletions(-)
Author: Douglas Bates
Diff between Matrix versions 0.999375-27 dated 2009-05-25 and 0.999375-28 dated 2009-06-09
Title: Sparse and Dense Matrix Classes and Methods
Description: Classes and methods for dense and sparse matrices and
operations on them using Lapack and SuiteSparse.
ChangeLog | 35
DESCRIPTION | 8
R/Matrix.R | 22
R/Tsparse.R | 6
R/bandSparse.R | 9
R/sparseVector.R | 4
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf | 1596 ++++++++++++++++++++++-----------------------
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/po |only
man/CsparseMatrix-class.Rd | 2
man/TsparseMatrix-class.Rd | 6
man/denseMatrix-class.Rd | 13
man/dsparseMatrix-class.Rd | 6
man/ldenseMatrix-class.Rd | 2
man/ndenseMatrix-class.Rd | 2
man/sparseMatrix-class.Rd | 2
po/Matrix.pot | 205 ++++-
po/R-Matrix.pot | 19
po/R-de.po |only
po/R-en@quot.po | 31
po/de.po |only
po/en@quot.po | 212 ++++-
po/update-me.sh | 9
src/CHMfactor.c | 2
src/Csparse.c | 6
src/Mutils.c | 17
src/Mutils.h | 2
src/chm_common.c | 38 -
src/cs_utils.c | 28
src/dgCMatrix.c | 10
src/dgeMatrix.c | 7
src/dsCMatrix.c | 2
src/sparseQR.c | 2
tests/Simple.R | 9
37 files changed, 1278 insertions(+), 1034 deletions(-)
Author: Markus Helbig
Diff between JGR versions 1.6-5 dated 2009-06-07 and 1.6-6 dated 2009-06-09
Title: JGR - Java Gui for R
Description: Java GUI for R - cross-platform, universal and unified
Graphical User Interface for R. For full functionality on
Windows and Mac OS X JGR requires a start application which
depends on your OS. This can be downloaded from JGR's website:
http://www.rosuda.org/JGR
DESCRIPTION | 4 ++--
NEWS | 3 +++
R/JGR.R | 4 ++--
inst/java/JGR.jar |binary
4 files changed, 7 insertions(+), 4 deletions(-)
Author: Jeffrey A. Ryan
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial
trading strategies
Diff between quantmod versions 0.3-7 dated 2008-11-18 and 0.3-9 dated 2009-06-08
quantmod-0.3-7/quantmod/R/breakpoints.R |only quantmod-0.3-7/quantmod/R/fast.to.period.R |only quantmod-0.3-7/quantmod/R/period.apply.R |only quantmod-0.3-9/quantmod/DESCRIPTION | 18 ++- quantmod-0.3-9/quantmod/NAMESPACE | 112 ++++++++++++++++------- quantmod-0.3-9/quantmod/R/OHLC.transformations.R | 12 +- quantmod-0.3-9/quantmod/R/TA.R | 48 +++++---- quantmod-0.3-9/quantmod/R/addAroon.R |only quantmod-0.3-9/quantmod/R/addCLV.R |only quantmod-0.3-9/quantmod/R/addChaikin.R |only quantmod-0.3-9/quantmod/R/addEMV.R |only quantmod-0.3-9/quantmod/R/addKST.R |only quantmod-0.3-9/quantmod/R/addMFI.R |only quantmod-0.3-9/quantmod/R/addOBV.R |only quantmod-0.3-9/quantmod/R/addSMI.R | 18 +-- quantmod-0.3-9/quantmod/R/addTA.R | 28 +---- quantmod-0.3-9/quantmod/R/addTDI.R |only quantmod-0.3-9/quantmod/R/addVolatility.R |only quantmod-0.3-9/quantmod/R/addZigZag.R |only quantmod-0.3-9/quantmod/R/adjustOHLC.R |only quantmod-0.3-9/quantmod/R/attachSymbols.R |only quantmod-0.3-9/quantmod/R/chartSeries.R | 44 ++++++++- quantmod-0.3-9/quantmod/R/chartSeries.chob.R | 35 ++++++- quantmod-0.3-9/quantmod/R/getDividends.R | 2 quantmod-0.3-9/quantmod/R/getFinancials.R | 4 quantmod-0.3-9/quantmod/R/getOptionChain.CBOE.R |only quantmod-0.3-9/quantmod/R/getOptionChain.R |only quantmod-0.3-9/quantmod/R/getQuote.R | 23 ++++ quantmod-0.3-9/quantmod/R/getSplits.R |only quantmod-0.3-9/quantmod/R/getSymbols.R | 102 +++++++++++++++++++- quantmod-0.3-9/quantmod/R/modelReturn.R | 2 quantmod-0.3-9/quantmod/R/newTA.R | 5 - quantmod-0.3-9/quantmod/R/peak.R | 27 ++++- quantmod-0.3-9/quantmod/R/periodReturn.R | 17 ++- quantmod-0.3-9/quantmod/R/reChart.R | 6 - quantmod-0.3-9/quantmod/R/returnBy.R | 2 quantmod-0.3-9/quantmod/R/saveChart.R |only quantmod-0.3-9/quantmod/R/tradeModel.R | 25 ++++- quantmod-0.3-9/quantmod/R/zzz.R | 60 ++++++------ quantmod-0.3-9/quantmod/man/TA.Rd | 28 +++++ quantmod-0.3-9/quantmod/man/addMA.Rd | 2 quantmod-0.3-9/quantmod/man/adjustOHLC.Rd |only quantmod-0.3-9/quantmod/man/attachSymbols.Rd |only quantmod-0.3-9/quantmod/man/chartSeries.Rd | 4 quantmod-0.3-9/quantmod/man/create.binding.Rd |only quantmod-0.3-9/quantmod/man/getDividends.Rd | 4 quantmod-0.3-9/quantmod/man/getFX.Rd | 3 quantmod-0.3-9/quantmod/man/getMetals.Rd | 3 quantmod-0.3-9/quantmod/man/getOptionChain.Rd |only quantmod-0.3-9/quantmod/man/getQuote.Rd | 9 + quantmod-0.3-9/quantmod/man/getSplits.Rd |only quantmod-0.3-9/quantmod/man/getSymbols.Rd | 32 +++++- quantmod-0.3-9/quantmod/man/getSymbols.oanda.Rd | 2 quantmod-0.3-9/quantmod/man/getSymbols.yahoo.Rd | 5 + quantmod-0.3-9/quantmod/man/peak.Rd | 15 +-- quantmod-0.3-9/quantmod/man/quantmod-package.Rd | 4 quantmod-0.3-9/quantmod/man/saveChart.Rd |only quantmod-0.3-9/quantmod/svn-commit.2.tmp |only quantmod-0.3-9/quantmod/svn-commit.tmp |only 59 files changed, 511 insertions(+), 190 deletions(-)
Author: Henrik Bengtsson
Diff between R.oo versions 1.4.6 dated 2008-10-30 and 1.4.8 dated 2009-06-08
Title: R object-oriented programming with or without references
Description: Methods and classes for object-oriented programming in R
with or without references. Large effort has been made on
making definition of methods as simple as possible with a
minimum of maintenance for package developers. The package has
been developed since 2001 and is now considered very stable.
This is a cross-platform package implemented in pure R that
defines standard S3 classes without any tricks.
DESCRIPTION | 40 ++++++++++++++++++------------
R/050.Object.R | 4 +--
R/060.Class.R | 14 +++++-----
R/ASCII.R | 7 +++--
R/BasicObject.R | 4 +--
R/Exception.R | 2 -
R/RccViolationException.R | 2 -
inst/NEWS | 9 ++++++
man/BasicObject.Rd | 2 -
man/DOLLARLT_-.BasicObject.Rd | 4 +--
man/DOLLARLT_-.Class.Rd | 14 +++++-----
man/Object.Rd | 2 -
man/as.character.Exception.Rd | 2 -
man/as.character.Object.Rd | 2 -
man/as.character.RccViolationException.Rd | 2 -
man/charToInt.Rd | 2 -
man/intToChar.Rd | 2 -
man/save.Object.Rd | 2 -
18 files changed, 69 insertions(+), 47 deletions(-)
Author: Thomas Scheike with contributions from Torben Martinussen and
Jeremy Silver
Title: timereg package for Flexible regression models for survival
data.
Description: Programs for Martinussen and Scheike (2006), `Dynamic
Regression Models for Survival Data', Springer Verlag. Plus
more recent developments. Additive survival model,
semiparmetric proportional odds model, cumulative residuals,
excess risk models and more. Flexible competing risks
regression including GOF-tests.
Diff between timereg versions 1.1-8 dated 2009-04-16 and 1.2-0 dated 2009-06-08
timereg-1.1-8/timereg/man/additive-lasso.Rd |only timereg-1.2-0/timereg/DESCRIPTION | 12 timereg-1.2-0/timereg/NAMESPACE | 15 - timereg-1.2-0/timereg/R/Gprop-odds.r | 7 timereg-1.2-0/timereg/R/aalen-test.r | 9 timereg-1.2-0/timereg/R/aalen.r | 8 timereg-1.2-0/timereg/R/additive-lasso.r | 221 +++++---------- timereg-1.2-0/timereg/R/additive-pls.r | 294 ++++++++++++--------- timereg-1.2-0/timereg/R/comprisk.r | 2 timereg-1.2-0/timereg/R/krylow.pls.r | 1 timereg-1.2-0/timereg/R/mgresid.r | 4 timereg-1.2-0/timereg/R/mylars.r | 129 +++++---- timereg-1.2-0/timereg/R/new.aalen-test.r | 9 timereg-1.2-0/timereg/R/new.aalen.r | 34 +- timereg-1.2-0/timereg/R/new.dynreg.r | 7 timereg-1.2-0/timereg/R/new.pe-sasieni.r | 7 timereg-1.2-0/timereg/R/pls.cv.r |only timereg-1.2-0/timereg/R/predict-timereg.r | 37 +- timereg-1.2-0/timereg/R/predict.lars.r | 20 - timereg-1.2-0/timereg/R/prop-odds.r | 7 timereg-1.2-0/timereg/R/read-design.r | 7 timereg-1.2-0/timereg/man/Gprop.odds.Rd | 4 timereg-1.2-0/timereg/man/aalen.Rd | 8 timereg-1.2-0/timereg/man/aalen.test.Rd | 10 timereg-1.2-0/timereg/man/additive-pls.Rd | 48 ++- timereg-1.2-0/timereg/man/comp.risk.Rd | 8 timereg-1.2-0/timereg/man/cox.aalen.Rd | 4 timereg-1.2-0/timereg/man/cum.residuals.Rd | 4 timereg-1.2-0/timereg/man/dynreg.Rd | 4 timereg-1.2-0/timereg/man/internal-addreg.Rd | 6 timereg-1.2-0/timereg/man/pe.sasieni.Rd | 2 timereg-1.2-0/timereg/man/plot.aalen.Rd | 2 timereg-1.2-0/timereg/man/plot.cum.residuals.Rd | 4 timereg-1.2-0/timereg/man/plot.dynreg.Rd | 2 timereg-1.2-0/timereg/man/predict.timereg.Rd | 12 timereg-1.2-0/timereg/man/prop.excess.Rd | 2 timereg-1.2-0/timereg/man/prop.odds.Rd | 2 timereg-1.2-0/timereg/man/summary.aalen.Rd | 2 timereg-1.2-0/timereg/man/summary.cum.residuals.Rd | 2 timereg-1.2-0/timereg/man/surv-lars.Rd | 58 +--- timereg-1.2-0/timereg/man/timecox.Rd | 4 timereg-1.2-0/timereg/src/aalen-test.c | 17 - timereg-1.2-0/timereg/src/aalen.c | 22 - timereg-1.2-0/timereg/src/additive-pls.c | 12 timereg-1.2-0/timereg/src/comptest.c | 2 timereg-1.2-0/timereg/src/cox-aalen.c | 2 timereg-1.2-0/timereg/src/matrix.c | 122 ++++++++ timereg-1.2-0/timereg/src/matrix.h | 2 timereg-1.2-0/timereg/src/prop-odds.c | 2 49 files changed, 693 insertions(+), 506 deletions(-)
Author: Torsten Hothorn, Frank Bretz and Peter Westfall with
contributions by Richard M. Heiberger and Andre
Schuetzenmeister
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals for general
linear hypotheses in parametric models, including linear,
generalized linear, linear mixed effects, and survival models.
Diff between multcomp versions 1.0-8 dated 2009-05-27 and 1.1-0 dated 2009-06-08
multcomp-1.0-8/multcomp/CHANGES |only multcomp-1.0-8/multcomp/inst/doc/chfls1.bbl |only multcomp-1.0-8/multcomp/inst/doc/chfls1.blg |only multcomp-1.1-0/multcomp/DESCRIPTION | 17 multcomp-1.1-0/multcomp/NAMESPACE | 7 multcomp-1.1-0/multcomp/NEWS |only multcomp-1.1-0/multcomp/R/cld.R |only multcomp-1.1-0/multcomp/inst/CHANGES | 8 multcomp-1.1-0/multcomp/inst/doc/chfls1.Rnw | 2 multcomp-1.1-0/multcomp/inst/doc/chfls1.pdf |binary multcomp-1.1-0/multcomp/inst/doc/generalsiminf.pdf | 1007 +++++------ multcomp-1.1-0/multcomp/inst/doc/multcomp-examples.pdf |binary multcomp-1.1-0/multcomp/man/cld.Rd |only multcomp-1.1-0/multcomp/man/plot.cld.Rd |only multcomp-1.1-0/multcomp/tests/Examples/multcomp-Ex.Rout.save | 254 ++ multcomp-1.1-0/multcomp/tests/bugfix.Rout.save | 28 multcomp-1.1-0/multcomp/tests/codetools-checks.Rout.save | 8 multcomp-1.1-0/multcomp/tests/regtest-Tukey.Rout.save | 10 multcomp-1.1-0/multcomp/tests/regtest-interface.Rout.save | 8 19 files changed, 780 insertions(+), 569 deletions(-)
Author: Richard Bourgon
Diff between intervals versions 0.10.3 dated 2009-01-20 and 0.12.0 dated 2009-06-08
Title: Tools for working with points and intervals
Description: Tools for working with and comparing sets of points and
intervals.
intervals-0.10.3/intervals/src/interval_overlap.cpp |only
intervals-0.12.0/intervals/DESCRIPTION | 17
intervals-0.12.0/intervals/NAMESPACE | 31
intervals-0.12.0/intervals/NEWS |only
intervals-0.12.0/intervals/R/Intervals-class.R | 7
intervals-0.12.0/intervals/R/distance_to_nearest-methods.R | 56
intervals-0.12.0/intervals/R/expand-methods.R | 13
intervals-0.12.0/intervals/R/interval_overlap-methods.R | 66
intervals-0.12.0/intervals/R/plot.Intervals_virtual.R |only
intervals-0.12.0/intervals/R/which_nearest-methods.R |only
intervals-0.12.0/intervals/inst/doc/intervals_overview.Rnw | 39
intervals-0.12.0/intervals/inst/doc/intervals_overview.pdf | 2146 +++++-----
intervals-0.12.0/intervals/man/Intervals-class.Rd | 42
intervals-0.12.0/intervals/man/Intervals_virtual-class.Rd | 16
intervals-0.12.0/intervals/man/c.Intervals.Rd | 8
intervals-0.12.0/intervals/man/close_intervals-methods.Rd | 2
intervals-0.12.0/intervals/man/clusters-methods.Rd | 2
intervals-0.12.0/intervals/man/distance_to_nearest-methods.Rd | 14
intervals-0.12.0/intervals/man/empty-methods.Rd | 2
intervals-0.12.0/intervals/man/expand-methods.Rd | 9
intervals-0.12.0/intervals/man/interval_complement-methods.Rd | 6
intervals-0.12.0/intervals/man/interval_difference-methods.Rd | 4
intervals-0.12.0/intervals/man/interval_overlap-methods.Rd | 90
intervals-0.12.0/intervals/man/intervals-package.Rd | 4
intervals-0.12.0/intervals/man/plot.Intervals.Rd |only
intervals-0.12.0/intervals/man/reduce-methods.Rd | 4
intervals-0.12.0/intervals/man/sgd.Rd | 12
intervals-0.12.0/intervals/man/which_nearest-methods.Rd |only
intervals-0.12.0/intervals/src/plot_overlap.cpp |only
intervals-0.12.0/intervals/src/which_nearest.cpp |only
intervals-0.12.0/intervals/tests/intervals_test_code.R | 31
31 files changed, 1464 insertions(+), 1157 deletions(-)
Author: Christian Ritz
Diff between drc versions 1.6-3 dated 2009-04-14 and 1.7-0 dated 2009-06-08
Title: Analysis of dose-response curves
Description: Analysis of one or multiple curves with focus on
concentration-response, dose-response and time-response curves
used, for example in biology, environmental sciences, medicine,
pharmacology, toxicology.
drc-1.6-3/drc/man/BC.5.Rd |only
drc-1.7-0/drc/DESCRIPTION | 8 -
drc-1.7-0/drc/NAMESPACE | 4
drc-1.7-0/drc/NEWS | 20 ++++
drc-1.7-0/drc/R/CRS.6.R | 24 ++++-
drc-1.7-0/drc/R/ED.drc.R | 5 -
drc-1.7-0/drc/R/EDhelper.R |only
drc-1.7-0/drc/R/baro5.R | 97 ++++++++++++------------
drc-1.7-0/drc/R/braincousens.R | 113 ++++++++++++++++------------
drc-1.7-0/drc/R/braincousens.ssf.R |only
drc-1.7-0/drc/R/cedergreen.R | 131 ++++++++++++++++++--------------
drc-1.7-0/drc/R/cedergreen.ssf.R |only
drc-1.7-0/drc/R/compParm.R | 11 +-
drc-1.7-0/drc/R/drm.R | 12 ++
drc-1.7-0/drc/R/drmOpt.R | 18 ++--
drc-1.7-0/drc/R/findbe.R |only
drc-1.7-0/drc/R/findcd.R |only
drc-1.7-0/drc/R/fplogistic.R |only
drc-1.7-0/drc/R/getInitial.R |only
drc-1.7-0/drc/R/gompertz.R | 32 +++++--
drc-1.7-0/drc/R/gompertz.ssf.R |only
drc-1.7-0/drc/R/gompertzd.R | 101 -------------------------
drc-1.7-0/drc/R/hewlett.R | 54 ++++---------
drc-1.7-0/drc/R/llogistic.R | 31 +++----
drc-1.7-0/drc/R/llogistic.ssf.R | 149 +++++++++++++++++++++++++++++++++----
drc-1.7-0/drc/R/llogistic2.R | 21 ++---
drc-1.7-0/drc/R/lnormal.R | 112 +++++++++++++++------------
drc-1.7-0/drc/R/lnormal.ssf.R |only
drc-1.7-0/drc/R/logistic.R | 69 +++++++++++------
drc-1.7-0/drc/R/logistic.ssf.R |only
drc-1.7-0/drc/R/maED.R |only
drc-1.7-0/drc/R/mselect.R | 17 ++--
drc-1.7-0/drc/R/ucedergreen.R | 94 +++++++++++------------
drc-1.7-0/drc/R/voelund.R | 53 ++++---------
drc-1.7-0/drc/R/weibull1.R | 90 ++++++++++++----------
drc-1.7-0/drc/R/weibull1.ssf.R |only
drc-1.7-0/drc/R/weibull2.R | 83 +++++++++++---------
drc-1.7-0/drc/R/weibull2.ssf.R |only
drc-1.7-0/drc/data/ecvam.rda |only
drc-1.7-0/drc/man/AR.Rd | 5 -
drc-1.7-0/drc/man/BC.Rd |only
drc-1.7-0/drc/man/CRS.4a.Rd | 5 -
drc-1.7-0/drc/man/CRS.5a.Rd | 35 +++++---
drc-1.7-0/drc/man/ED.drc.Rd | 2
drc-1.7-0/drc/man/EXD.Rd | 5 -
drc-1.7-0/drc/man/W2.Rd | 8 +
drc-1.7-0/drc/man/W3.Rd | 9 +-
drc-1.7-0/drc/man/W4.Rd | 8 +
drc-1.7-0/drc/man/anova.drc.Rd | 3
drc-1.7-0/drc/man/baro5.Rd | 46 ++++-------
drc-1.7-0/drc/man/braincousens.Rd | 10 +-
drc-1.7-0/drc/man/cedergreen.Rd | 20 +++-
drc-1.7-0/drc/man/compParm.Rd | 5 -
drc-1.7-0/drc/man/ecvam.Rd |only
drc-1.7-0/drc/man/fplogistic.Rd |only
drc-1.7-0/drc/man/getInitial.Rd |only
drc-1.7-0/drc/man/gompertz.Rd | 13 +--
drc-1.7-0/drc/man/gompertzd.Rd | 11 --
drc-1.7-0/drc/man/llogistic.Rd | 5 -
drc-1.7-0/drc/man/lnormal.Rd | 11 +-
drc-1.7-0/drc/man/logistic.Rd | 17 ++--
drc-1.7-0/drc/man/maED.Rd |only
drc-1.7-0/drc/man/weibull1.Rd | 8 +
drc-1.7-0/drc/tests/test1.R | 10 +-
drc-1.7-0/drc/tests/test2.R | 25 +++---
65 files changed, 903 insertions(+), 707 deletions(-)
Author: Markus Loecher, Sense Networks
Diff between HTMLUtils versions 0.1.1 dated 2009-05-24 and 0.1.2 dated 2009-06-08
Title: Facilitates automated HTML report creation
Description: Facilitates automated HTML report creation, in particular
framed HTML pages and dynamically sortable tables.
DESCRIPTION | 11 ++++++-----
R/CairoWorks.R | 16 +++++++++++-----
R/FramedHTML.R | 4 ++--
R/myHTMLInitFile.R | 9 +++++----
man/CairoWorks.Rd | 2 +-
man/FramedHTML.Rd | 5 +++--
man/HTMLUtils-package.Rd | 4 ++--
man/myHTMLInitFile.Rd | 3 ++-
8 files changed, 32 insertions(+), 22 deletions(-)
Author: Carter T. Butts
Diff between sna versions 2.0 dated 2009-06-07 and 2.0-1 dated 2009-06-08
Title: Tools for Social Network Analysis
Description: A range of tools for social network analysis, including
node and graph-level indices, structural distance and
covariance methods, structural equivalence detection, p*
modeling, random graph generation, and 2D/3D network
visualization.
DESCRIPTION | 6 +++---
man/brokerage.Rd | 4 ++--
2 files changed, 5 insertions(+), 5 deletions(-)
Author: Nicholas Austin Johnson
Diff between cghFLasso versions 0.1-2 dated 2007-08-09 and 0.2-1 dated 2009-06-08
Title: Detecting hot spot on CGH array data with fused lasso
regression.
Description: Spatial smoothing and hot spot detection using the fused
lasso regression
cghFLasso-0.1-2/cghFLasso/configure |only
cghFLasso-0.1-2/cghFLasso/configure.in |only
cghFLasso-0.1-2/cghFLasso/configure.win |only
cghFLasso-0.1-2/cghFLasso/src/CGH.FL.f90 |only
cghFLasso-0.1-2/cghFLasso/src/Makevars |only
cghFLasso-0.2-1/cghFLasso/DESCRIPTION | 20 +
cghFLasso-0.2-1/cghFLasso/R/cghFLasso.R | 234 ++++++++++++++-------
cghFLasso-0.2-1/cghFLasso/man/CGH.Rd | 21 -
cghFLasso-0.2-1/cghFLasso/man/cghFLasso.Rd | 5
cghFLasso-0.2-1/cghFLasso/man/cghFLasso.ref.Rd | 7
cghFLasso-0.2-1/cghFLasso/man/output.cghFLasso.Rd | 2
cghFLasso-0.2-1/cghFLasso/man/plot.cghFLasso.Rd | 2
cghFLasso-0.2-1/cghFLasso/man/summary.cghFLasso.Rd | 4
cghFLasso-0.2-1/cghFLasso/src/L2L1VitExact.c |only
cghFLasso-0.2-1/cghFLasso/src/smooth.f90 |only
15 files changed, 191 insertions(+), 104 deletions(-)
Author: Henrik Bengtsson
Diff between R.utils versions 1.1.1 dated 2008-12-11 and 1.1.7 dated 2009-06-08
Title: Various programming utilities
Description: This package provides utility classes and methods useful
when programming in R and developing R packages.
R.utils-1.1.1/R.utils/man/Sys.setenv.Rd |only
R.utils-1.1.7/R.utils/DESCRIPTION | 31 ++--
R.utils-1.1.7/R.utils/R/Arguments.R | 135 +++++++++++++++-----
R.utils-1.1.7/R.utils/R/Settings.R | 5
R.utils-1.1.7/R.utils/R/Verbose.R | 5
R.utils-1.1.7/R.utils/R/beta |only
R.utils-1.1.7/R.utils/R/devel |only
R.utils-1.1.7/R.utils/R/filePath.R | 5
R.utils-1.1.7/R.utils/R/insert.R | 35 ++++-
R.utils-1.1.7/R.utils/R/isPackageInstalled.R |only
R.utils-1.1.7/R.utils/R/isPackageLoaded.R | 1
R.utils-1.1.7/R.utils/R/isZero.R | 2
R.utils-1.1.7/R.utils/R/mergeIntervals.R | 2
R.utils-1.1.7/R.utils/R/readWindowsShortcut.R | 5
R.utils-1.1.7/R.utils/R/removeDirectory.R |only
R.utils-1.1.7/R.utils/R/subplots.R |only
R.utils-1.1.7/R.utils/R/unwrap.array.R | 2
R.utils-1.1.7/R.utils/incl/insert.Rex | 19 +-
R.utils-1.1.7/R.utils/inst/NEWS | 47 ++++++
R.utils-1.1.7/R.utils/man/Settings.Rd | 5
R.utils-1.1.7/R.utils/man/getNumerics.Arguments.Rd | 4
R.utils-1.1.7/R.utils/man/insert.Rd | 23 ++-
R.utils-1.1.7/R.utils/man/isPackageInstalled.Rd |only
R.utils-1.1.7/R.utils/man/isPackageLoaded.Rd | 1
R.utils-1.1.7/R.utils/man/isZero.Rd | 2
R.utils-1.1.7/R.utils/man/less.Verbose.Rd | 2
R.utils-1.1.7/R.utils/man/mergeIntervals.numeric.Rd | 2
R.utils-1.1.7/R.utils/man/readWindowsShortcut.Rd | 3
R.utils-1.1.7/R.utils/man/removeDirectory.Rd |only
R.utils-1.1.7/R.utils/man/subplots.Rd |only
R.utils-1.1.7/R.utils/man/unwrap.array.Rd | 2
31 files changed, 260 insertions(+), 78 deletions(-)
Author: Henrik Bengtsson
Diff between R.huge versions 0.1.5 dated 2007-09-01 and 0.1.7 dated 2009-06-08
Title: Methods for accessing huge amounts of data
Description: The package currently provides a class representing a
matrix where the actual data is stored in a binary format on
the local file system. This way the size limit of the data is
set by the file system and not the memory. Please consider
this package to in an alpha/early-beta version.
R.huge-0.1.5/R.huge/R/readBinFragments.R |only
R.huge-0.1.5/R.huge/R/writeBinFragments.R |only
R.huge-0.1.5/R.huge/inst/HISTORY |only
R.huge-0.1.7/R.huge/DESCRIPTION | 36 ++++++++++++--------
R.huge-0.1.7/R.huge/R/000.R | 21 +++--------
R.huge-0.1.7/R.huge/R/AbstractFileArray.R | 41 +++++++++++++++++++----
R.huge-0.1.7/R.huge/R/FileMatrix.R | 3 +
R.huge-0.1.7/R.huge/inst/NEWS |only
R.huge-0.1.7/R.huge/man/dim.AbstractFileArray.Rd | 3 -
9 files changed, 65 insertions(+), 39 deletions(-)
Author: Steffen Moeller
Diff between sugaR versions 0.0-4 dated 2009-06-02 and 0.0-5 dated 2009-06-07
Title: Plots to help optimising diabetes therapy
Description: The package provides a series of plots to integrate
glucose levels, basal rate, activities, events and carbohydrate
uptake on a single page in a humanely interpretable manner. It
is meant for best-possibly representing the content of a
well-curated diabetes diary of up to a week's time or of up to
seven comparable days, from which conclusions for adjusting the
individual treatment shall be drawn.
DESCRIPTION | 16
Makefile | 2
R/data.R | 23
R/diabetes.R | 82
data/diabetesDiary.RData |binary
inst/doc/sugaR.Rnw | 802 ++++---
inst/doc/sugaR.pdf | 5035 ++++++++++++++++++++++++++++-------------------
man/diabetesDiary.Rd | 22
man/sugar.over.time.Rd | 7
9 files changed, 3668 insertions(+), 2321 deletions(-)
Author: Jean Thioulouse
Diff between ade4TkGUI versions 0.2-4 dated 2009-05-04 and 0.2-5 dated 2009-06-07
Title: ade4 Tcl/Tk Graphical User Interface
Description: a Tcl/Tk GUI for some basic functions in the ade4 package
DESCRIPTION | 10 ++--
R/ordiClust.R | 116 ++++++++++++++++++++++++++++++++++++++++++++++++++++++-
man/ordiClust.Rd | 3 -
3 files changed, 122 insertions(+), 7 deletions(-)
Author: G. Grothendieck
Diff between sqldf versions 0-1.4 dated 2008-12-11 and 0-1.5 dated 2009-06-07
Title: Perform SQL Selects on R Data Frames
Description: Manipulate R data frames using SQL.
DESCRIPTION | 31 +++++++++++++------------------
R/sqldf.R | 16 ++++++++++++++++
inst/NEWS | 11 +++++++++--
inst/THANKS | 1 +
inst/TODO |only
man/read.csv.sql.Rd |only
man/sqldf.Rd | 7 +++----
7 files changed, 42 insertions(+), 24 deletions(-)
Author: Carter T. Butts
Diff between sna versions 1.5 dated 2007-08-01 and 2.0 dated 2009-06-07
Title: Tools for Social Network Analysis
Description: A range of tools for social network analysis, including
node and graph-level indices, structural distance and
covariance methods, structural equivalence detection, p*
modeling, random graph generation, and 2D/3D network
visualization.
sna-1.5/sna/man/addisolates-deprecated.Rd |only
sna-2.0/sna/ChangeLog | 85 +++
sna-2.0/sna/DESCRIPTION | 18
sna-2.0/sna/INDEX | 17
sna-2.0/sna/R/connectivity.R | 262 ++++++++++-
sna-2.0/sna/R/dataprep.R | 492 ++++++++++++++++++----
sna-2.0/sna/R/fileio.R | 11
sna-2.0/sna/R/gli.R | 333 +++++++--------
sna-2.0/sna/R/gmultiv.R | 22 -
sna-2.0/sna/R/gtest.R | 118 +++++
sna-2.0/sna/R/models.R | 252 +++++++----
sna-2.0/sna/R/nli.R | 368 ++++++++++------
sna-2.0/sna/R/randomgraph.R | 314 ++++++++++----
sna-2.0/sna/R/roles.R | 103 ++++
sna-2.0/sna/R/sna-operators.R | 34 +
sna-2.0/sna/R/visualization.R | 434 +++++++++++++------
sna-2.0/sna/data |only
sna-2.0/sna/man/add.isolates.Rd | 3
sna-2.0/sna/man/bbnam.Rd | 73 +--
sna-2.0/sna/man/bbnam.bf.Rd | 39 +
sna-2.0/sna/man/betweenness.Rd | 57 ++
sna-2.0/sna/man/bicomponent.dist.Rd |only
sna-2.0/sna/man/brokerage.Rd | 12
sna-2.0/sna/man/centralization.Rd | 4
sna-2.0/sna/man/clique.census.Rd |only
sna-2.0/sna/man/closeness.Rd | 9
sna-2.0/sna/man/coleman.Rd |only
sna-2.0/sna/man/cug.test.Rd |only
sna-2.0/sna/man/cugtest.Rd | 14
sna-2.0/sna/man/cutpoints.Rd |only
sna-2.0/sna/man/degree.Rd | 11
sna-2.0/sna/man/evcent.Rd | 4
sna-2.0/sna/man/flowbet.Rd |only
sna-2.0/sna/man/gapply.Rd | 2
sna-2.0/sna/man/gclust.centralgraph.Rd | 2
sna-2.0/sna/man/gden.Rd | 5
sna-2.0/sna/man/geodist.Rd | 13
sna-2.0/sna/man/gplot.Rd | 23 -
sna-2.0/sna/man/gplot3d.Rd | 8
sna-2.0/sna/man/graphcent.Rd | 17
sna-2.0/sna/man/grecip.Rd | 11
sna-2.0/sna/man/gt.Rd |only
sna-2.0/sna/man/gtrans.Rd | 5
sna-2.0/sna/man/interval.graph.Rd | 4
sna-2.0/sna/man/kcores.Rd |only
sna-2.0/sna/man/loadcent.Rd |only
sna-2.0/sna/man/lower.tri.remove.Rd | 2
sna-2.0/sna/man/lubness.Rd | 2
sna-2.0/sna/man/make.stochastic.Rd | 2
sna-2.0/sna/man/maxflow.Rd |only
sna-2.0/sna/man/nacf.Rd | 2
sna-2.0/sna/man/netlm.Rd | 16
sna-2.0/sna/man/path.census.Rd | 10
sna-2.0/sna/man/plot.bbnam.Rd | 2
sna-2.0/sna/man/plot.blockmodel.Rd | 2
sna-2.0/sna/man/plot.cugtest.Rd | 2
sna-2.0/sna/man/plot.equiv.clust.Rd | 2
sna-2.0/sna/man/plot.lnam.Rd | 2
sna-2.0/sna/man/plot.qaptest.Rd | 2
sna-2.0/sna/man/plot.sociomatrix.Rd | 8
sna-2.0/sna/man/potscalered.mcmc.Rd | 6
sna-2.0/sna/man/print.bayes.factor.Rd | 6
sna-2.0/sna/man/print.bbnam.Rd | 6
sna-2.0/sna/man/print.blockmodel.Rd | 6
sna-2.0/sna/man/print.cugtest.Rd | 6
sna-2.0/sna/man/print.lnam.Rd | 2
sna-2.0/sna/man/print.netcancor.Rd | 10
sna-2.0/sna/man/print.netlm.Rd | 10
sna-2.0/sna/man/print.netlogit.Rd | 10
sna-2.0/sna/man/print.qaptest.Rd | 10
sna-2.0/sna/man/print.summary.bayes.factor.Rd | 10
sna-2.0/sna/man/print.summary.bbnam.Rd | 12
sna-2.0/sna/man/print.summary.blockmodel.Rd | 12
sna-2.0/sna/man/print.summary.cugtest.Rd | 12
sna-2.0/sna/man/print.summary.lnam.Rd | 2
sna-2.0/sna/man/print.summary.netcancor.Rd | 12
sna-2.0/sna/man/print.summary.netlm.Rd | 12
sna-2.0/sna/man/print.summary.netlogit.Rd | 12
sna-2.0/sna/man/print.summary.qaptest.Rd | 12
sna-2.0/sna/man/read.nos.Rd | 13
sna-2.0/sna/man/redist.Rd |only
sna-2.0/sna/man/rgbn.Rd | 26 -
sna-2.0/sna/man/rgnm.Rd | 14
sna-2.0/sna/man/rgnmix.Rd |only
sna-2.0/sna/man/rgraph.Rd | 7
sna-2.0/sna/man/rguman.Rd | 9
sna-2.0/sna/man/rgws.Rd | 7
sna-2.0/sna/man/sna-defunct.Rd | 2
sna-2.0/sna/man/sna-deprecated.Rd | 11
sna-2.0/sna/man/sna-internal.Rd | 11
sna-2.0/sna/man/sna.Rd | 17
sna-2.0/sna/man/stackcount.Rd | 4
sna-2.0/sna/man/stresscent.Rd | 5
sna-2.0/sna/man/summary.bayes.factor.Rd | 6
sna-2.0/sna/man/summary.bbnam.Rd | 8
sna-2.0/sna/man/summary.blockmodel.Rd | 8
sna-2.0/sna/man/summary.cugtest.Rd | 8
sna-2.0/sna/man/summary.lnam.Rd | 2
sna-2.0/sna/man/summary.netcancor.Rd | 8
sna-2.0/sna/man/summary.netlm.Rd | 8
sna-2.0/sna/man/summary.netlogit.Rd | 8
sna-2.0/sna/man/summary.qaptest.Rd | 8
sna-2.0/sna/man/symmetrize.Rd | 3
sna-2.0/sna/src/cohesion.c |only
sna-2.0/sna/src/cohesion.h |only
sna-2.0/sna/src/components.c | 194 ++++++++
sna-2.0/sna/src/components.h | 18
sna-2.0/sna/src/geodist.c | 571 +++++++++++++++++++++++++-
sna-2.0/sna/src/geodist.h | 16
sna-2.0/sna/src/gli.c | 16
sna-2.0/sna/src/gli.h | 4
sna-2.0/sna/src/layout.c | 91 ++--
sna-2.0/sna/src/layout.h | 20
sna-2.0/sna/src/nli.c | 291 ++++++++++++-
sna-2.0/sna/src/nli.h | 30 +
sna-2.0/sna/src/paths.c | 99 ++--
sna-2.0/sna/src/paths.h | 7
sna-2.0/sna/src/randomgraph.c | 477 +++++++++++++++++++++
sna-2.0/sna/src/randomgraph.h | 16
sna-2.0/sna/src/triads.c | 205 ++++++++-
sna-2.0/sna/src/triads.h | 11
sna-2.0/sna/src/utils.c | 355 +++++++++++++++-
sna-2.0/sna/src/utils.h | 75 +++
123 files changed, 4854 insertions(+), 1236 deletions(-)
Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve
Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.24-1 dated 2009-05-15 and 0.24-5 dated 2009-06-07
pomp-0.24-1/pomp/inst/doc/Rplots.pdf |only pomp-0.24-1/pomp/inst/doc/compiled_code_in_pomp.Rnw |only pomp-0.24-1/pomp/inst/doc/compiled_code_in_pomp.pdf |only pomp-0.24-5/pomp/DESCRIPTION | 10 pomp-0.24-5/pomp/R/bsplines.R | 16 - pomp-0.24-5/pomp/R/nlf.R | 2 pomp-0.24-5/pomp/data/euler.sir.rda |binary pomp-0.24-5/pomp/data/ou2.rda |binary pomp-0.24-5/pomp/data/rw2.rda |binary pomp-0.24-5/pomp/inst/ChangeLog | 66 +++++ pomp-0.24-5/pomp/inst/doc/Makefile | 4 pomp-0.24-5/pomp/inst/doc/advanced_topics_in_pomp.Rnw |only pomp-0.24-5/pomp/inst/doc/advanced_topics_in_pomp.pdf |only pomp-0.24-5/pomp/inst/doc/intro_to_pomp.Rnw | 236 ++++++++++++------ pomp-0.24-5/pomp/inst/doc/intro_to_pomp.pdf |binary pomp-0.24-5/pomp/man/bsplines.Rd | 25 - pomp-0.24-5/pomp/man/dmeasure-pomp.Rd | 10 pomp-0.24-5/pomp/man/dprocess-pomp.Rd | 7 pomp-0.24-5/pomp/man/euler.Rd | 34 -- pomp-0.24-5/pomp/man/euler.sir.Rd | 2 pomp-0.24-5/pomp/man/eulermultinom.Rd | 25 - pomp-0.24-5/pomp/man/init.state-pomp.Rd | 19 - pomp-0.24-5/pomp/man/mif-class.Rd | 14 - pomp-0.24-5/pomp/man/mif-methods.Rd | 4 pomp-0.24-5/pomp/man/mif.Rd | 14 - pomp-0.24-5/pomp/man/nlf.Rd | 10 pomp-0.24-5/pomp/man/ou2.Rd | 3 pomp-0.24-5/pomp/man/particles-mif.Rd | 16 - pomp-0.24-5/pomp/man/pfilter.Rd | 7 pomp-0.24-5/pomp/man/pomp-class.Rd | 18 - pomp-0.24-5/pomp/man/pomp-methods.Rd | 8 pomp-0.24-5/pomp/man/pomp-package.Rd | 29 +- pomp-0.24-5/pomp/man/pomp.Rd | 165 ++++++------ pomp-0.24-5/pomp/man/rmeasure-pomp.Rd | 6 pomp-0.24-5/pomp/man/rprocess-pomp.Rd | 5 pomp-0.24-5/pomp/man/simulate-pomp.Rd | 10 pomp-0.24-5/pomp/man/skeleton-pomp.Rd | 10 pomp-0.24-5/pomp/man/sobol.Rd | 14 - pomp-0.24-5/pomp/man/trajectory-pomp.Rd | 20 + pomp-0.24-5/pomp/src/bspline.c | 13 40 files changed, 519 insertions(+), 303 deletions(-)
Author: Yves Croissant
Diff between plm versions 1.1-2 dated 2009-05-05 and 1.1-4 dated 2009-06-07
Title: Linear models for panel data
Description: A set of estimators and tests for panel data
DESCRIPTION | 10 +++++-----
NAMESPACE | 1 +
R/plm.R | 9 +++++----
R/plm.methods.R | 3 +--
changelog | 21 +++++++++++++++++++++
inst |only
6 files changed, 33 insertions(+), 11 deletions(-)
Author: Volkmar Henschel, Christiane Heiss, Ulrich Mansmann
Diff between intcox versions 0.9.1.1 dated 2009-02-23 and 0.9.2 dated 2009-06-07
Title: Iterated Convex Minorant Algorithm for interval censored event
data
Description: Implementation of ICM-Algorithm by Wei Pan, J. Comp. & Gr.
Stat. 78: 109-120, 1999 Algorithm for the Cox proportional
hazard model for interval censored data
intcox-0.9.1.1/intcox/data/aneurism.data.rda |only
intcox-0.9.1.1/intcox/inst/doc/aneurism_km.eps |only
intcox-0.9.1.1/intcox/inst/doc/aneurism_km.pdf |only
intcox-0.9.1.1/intcox/inst/doc/aneurism_para.eps |only
intcox-0.9.1.1/intcox/inst/doc/aneurism_para.pdf |only
intcox-0.9.1.1/intcox/inst/doc/intcox-aneurismplot.eps |only
intcox-0.9.1.1/intcox/inst/doc/intcox-aneurismplot.pdf |only
intcox-0.9.1.1/intcox/man/aneurism.data.Rd |only
intcox-0.9.1.1/intcox/man/intcox-package.Rd |only
intcox-0.9.2/intcox/DESCRIPTION | 28 +-
intcox-0.9.2/intcox/R/intcox.R | 6
intcox-0.9.2/intcox/R/intcox.breslow.R | 3
intcox-0.9.2/intcox/R/intcox.derivs.R | 3
intcox-0.9.2/intcox/R/intcox.fit.R | 3
intcox-0.9.2/intcox/R/intcox.hazard0.R | 3
intcox-0.9.2/intcox/R/intcox.hazard0.beg.R | 3
intcox-0.9.2/intcox/R/intcox.pavaC.R | 3
intcox-0.9.2/intcox/data/AA.data.rda |only
intcox-0.9.2/intcox/inst/doc/Rplots.pdf |only
intcox-0.9.2/intcox/inst/doc/Rplots.ps | 68 ++++++
intcox-0.9.2/intcox/inst/doc/aneur_km.eps |only
intcox-0.9.2/intcox/inst/doc/aneur_km.pdf |only
intcox-0.9.2/intcox/inst/doc/aneur_para.eps |only
intcox-0.9.2/intcox/inst/doc/aneur_para.pdf |only
intcox-0.9.2/intcox/inst/doc/intcox.Rnw | 180 ++++++++---------
intcox-0.9.2/intcox/inst/doc/intcox.pdf |binary
intcox-0.9.2/intcox/man/AA.data.Rd |only
intcox-0.9.2/intcox/man/intcox.Rd | 3
28 files changed, 178 insertions(+), 125 deletions(-)
Author: Patrick Brown
Title: Calculate SMR's from population and case data
Description: works with regular data set file and shape file.
Diff between diseasemapping versions 0.3 dated 2009-04-26 and 0.4 dated 2009-06-07
DESCRIPTION | 8 ++++---- R/getRates.R | 2 +- R/getSMR.data.frame.R | 10 ++++++---- R/getSMR.list.r | 2 +- man/computeArea.Rd | 2 +- man/diseasemapping-package.Rd | 3 +-- man/formatCases.Rd | 12 ++++++------ man/formatPopulation.Rd | 4 ++-- 8 files changed, 22 insertions(+), 21 deletions(-)
More information about diseasemapping at CRAN
Permanent link
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Title: Tools for parsing and generating XML within R and S-Plus.
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Diff between XML versions 2.5-0 dated 2009-06-02 and 2.5-1 dated 2009-06-07
Changes | 7 ++++++ DESCRIPTION | 9 ++++--- INSTALL | 2 - NAMESPACE | 11 ++++++--- R/XMLClasses.R | 2 - R/readHTMLTable.R | 2 + R/xmlOutputBuffer.R | 8 ++++-- R/xmlOutputDOM.R | 14 +++++++++--- R/xmlTree.R | 7 ++++-- configure | 59 +++++++++++++++++++++++++++++++++++++++++++++++++++ configure.in | 23 +++++++++++++++++++ src/libxmlFeatures.c | 12 ++++++++-- 12 files changed, 137 insertions(+), 19 deletions(-)
Author: Duncan Temple Lang
Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Diff between RCurl versions 0.97-3 dated 2009-05-28 and 0.98-1 dated 2009-06-07
RCurl-0.97-3/RCurl/CodeGeneration/foo.html |only RCurl-0.97-3/RCurl/inst/CurlSSL/cacert.pem |only RCurl-0.97-3/RCurl/inst/CurlSSL/google.pem |only RCurl-0.97-3/RCurl/inst/CurlSSL/logfile |only RCurl-0.97-3/RCurl/inst/CurlSSL/myBundle.crt |only RCurl-0.97-3/RCurl/inst/CurlSSL/ok.R |only RCurl-0.97-3/RCurl/inst/CurlSSL/server.pem |only RCurl-0.97-3/RCurl/inst/doc/fileUploads.html |only RCurl-0.97-3/RCurl/inst/doc/fileUploads.pdf |only RCurl-0.97-3/RCurl/inst/doc/philosophy.pdf |only RCurl-0.97-3/RCurl/r_packets.tcp |only RCurl-0.97-3/RCurl/tickets.tcp |only RCurl-0.98-1/RCurl/Changes.html | 19 RCurl-0.98-1/RCurl/CodeGeneration/enum.c.tu |only RCurl-0.98-1/RCurl/CodeGeneration/generate.R | 37 RCurl-0.98-1/RCurl/CodeGeneration/tmp |only RCurl-0.98-1/RCurl/DESCRIPTION | 8 RCurl-0.98-1/RCurl/NAMESPACE | 3 RCurl-0.98-1/RCurl/R/classes.S | 1 RCurl-0.98-1/RCurl/R/upload.R | 8 RCurl-0.98-1/RCurl/configure | 2832 +++++++++++++++++++++++++-- RCurl-0.98-1/RCurl/configure.in | 75 RCurl-0.98-1/RCurl/inst/doc/philosophy.html | 28 RCurl-0.98-1/RCurl/inst/enums/enums.R |only RCurl-0.98-1/RCurl/inst/enums/foo.c |only RCurl-0.98-1/RCurl/itis.R |only RCurl-0.98-1/RCurl/man/CFILE.Rd |only RCurl-0.98-1/RCurl/src/CURLINFOTable.h | 130 - RCurl-0.98-1/RCurl/src/CURLOptTable.h | 60 RCurl-0.98-1/RCurl/src/CurlInfoEnums.h | 27 RCurl-0.98-1/RCurl/src/Makevars | 8 RCurl-0.98-1/RCurl/src/curl.c | 32 32 files changed, 3026 insertions(+), 242 deletions(-)
Author: Markus Helbig
Diff between JGR versions 1.6-4 dated 2009-06-02 and 1.6-5 dated 2009-06-07
Title: JGR - Java Gui for R
Description: Java GUI for R - cross-platform, universal and unified
Graphical User Interface for R. For full functionality on
Windows and Mac OS X JGR requires a start application which
depends on your OS. This can be downloaded from JGR's website:
http://www.rosuda.org/JGR
DESCRIPTION | 4 ++--
NEWS | 4 ++++
R/JGR.R | 4 ++--
inst/java/JGR.jar |binary
4 files changed, 8 insertions(+), 4 deletions(-)
Author: Pedro Brasil
Diff between DiagnosisMed versions 0.2 dated 2009-04-30 and 0.2.2 dated 2009-06-07
Title: Diagnostic test accuracy evaluation for medical professionals.
Description: DiagnosisMed is a package to analyze data from diagnostic
test accuracy evaluating health conditions. It is being built
to be used by health professionals. This package is - or soon
will be - able to estimate sample size for common situations in
diagnostic test accuracy, estimate sensitivity and specificity
from categorical and continuous test results including some
evaluations of indeterminate results, or compare different
analysis strategies into measures commonly used by health
professionals.
DESCRIPTION | 12 -
R/ROC.r | 303 ++++++++++---------------------------------------
R/TGROC.r | 343 ++++++++++++++++++++++++++++++++++++++++++--------------
R/plot.ROC.r |only
R/print.ROC.r | 9 -
R/print.TGROC.r | 25 ++--
R/print.diag.r | 28 ++--
man/ROC.Rd | 41 ++++++
man/TGROC.Rd | 79 +++++++++---
9 files changed, 461 insertions(+), 379 deletions(-)
Author: Benjamin Haibe-Kains, Christos Sotiriou, Gianluca Bontempi
Title: Performance Assessment and Comparison for Survival Analysis
Description: R package providing functions to assess and to compare the
performance of risk prediction (survival) models.
Diff between survcomp versions 1.1.0 dated 2009-04-22 and 1.1.2 dated 2009-06-05
DESCRIPTION | 9 +++++---- R/fisherz.R | 6 +++--- R/km.coxph.plot.R |only R/no.at.risk.R |only R/td.sens.spec.R |only man/D.index.Rd | 2 +- man/fisherz.Rd | 3 ++- man/hazard.ratio.Rd | 2 +- man/km.coxph.plot.Rd |only man/no.at.risk.Rd |only man/survcomp-package.Rd | 4 ++-- man/td.sens.spec.Rd |only man/tdrocc.Rd | 38 +++++++++++++++++++------------------- 13 files changed, 33 insertions(+), 31 deletions(-)
Author: Roger Bivand and Danlin Yu
Title: Geographically weighted regression
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Diff between spgwr versions 0.5-7 dated 2009-03-24 and 0.5-10 dated 2009-06-05
ChangeLog | 25 ++++++++++++++++ DESCRIPTION | 8 ++--- R/gwr.R | 86 ++++++++++++++++++++++++++++++++++++++++++++++++++------- inst/ChangeLog | 25 ++++++++++++++++ man/gwr.Rd | 18 ++++++++++- 5 files changed, 146 insertions(+), 16 deletions(-)
Author: R by Meinhard Ploner,Fortran by Georg Heinze
Title: Weighted Cox regression
Description: Weighted estimation for Cox regression
Diff between coxphw versions 1.1 dated 2008-07-28 and 1.3 dated 2009-06-05
DESCRIPTION | 24 ++++++++++-------- R/coxphw.r | 17 ++++++++++--- man/coxphw.Rd | 9 ++++-- src/coxphw.f90 | 74 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 4 files changed, 107 insertions(+), 17 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.16 dated 2009-05-24 and 4.17 dated 2009-06-05
caret-4.16/caret/R/makeCubistFiles.R |only caret-4.17/caret/DESCRIPTION | 12 +++++---- caret-4.17/caret/R/bagFDA.R | 34 +++++++++++++-------------- caret-4.17/caret/R/nearZeroVar.R | 33 ++++++++++++++++++++++++-- caret-4.17/caret/inst/doc/caretMisc.tex |only caret-4.17/caret/inst/doc/caretSelection.tex |only caret-4.17/caret/inst/doc/caretTrain.Rnw | 12 +++++++-- caret-4.17/caret/inst/doc/caretTrain.tex |only caret-4.17/caret/inst/doc/caretVarImp.tex |only caret-4.17/caret/man/nearZeroVar.Rd | 2 - caret-4.17/caret/man/train.Rd | 12 +++++---- 11 files changed, 72 insertions(+), 33 deletions(-)
Author: Volkmar Henschel, Christiane Heiss, Ulrich Mansmann
Diff between survBayes versions 0.2.1.1 dated 2009-02-23 and 0.2.2 dated 2009-06-05
Title: Fits a proportional hazards model to time to event data by a
Bayesian approach
Description: Fits a proportional hazards model to time to event data by
a Bayesian approach. Right and interval censored data and a
lognormal frailty term can be fitted.
survBayes-0.2.1.1/survBayes/data/aneurism.data.rda |only
survBayes-0.2.1.1/survBayes/man/aneurism.data.Rd |only
survBayes-0.2.1.1/survBayes/man/survBayes-package.Rd |only
survBayes-0.2.2/survBayes/DESCRIPTION | 28
survBayes-0.2.2/survBayes/R/survBayes.KM.int.R | 3
survBayes-0.2.2/survBayes/R/survBayes.R | 26
survBayes-0.2.2/survBayes/R/survBayes.b.fctn.Lambda.lin.R | 3
survBayes-0.2.2/survBayes/R/survBayes.b.fctn.Lambda.quad.a.R | 3
survBayes-0.2.2/survBayes/R/survBayes.b.fctn.Lambda.quad.b.R | 3
survBayes-0.2.2/survBayes/R/survBayes.b.fctn.Lambda.quad.c.R | 3
survBayes-0.2.2/survBayes/R/survBayes.b.fctn.Lambda.quad.d.R | 3
survBayes-0.2.2/survBayes/R/survBayes.base.R | 11
survBayes-0.2.2/survBayes/R/survBayes.baseline.hazard.R | 101 -
survBayes-0.2.2/survBayes/R/survBayes.control.R | 36
survBayes-0.2.2/survBayes/R/survBayes.control.gamma.frailty.R | 3
survBayes-0.2.2/survBayes/R/survBayes.control.lognormal.frailty.R | 3
survBayes-0.2.2/survBayes/R/survBayes.draw.cond.pw.lin.exp.R | 3
survBayes-0.2.2/survBayes/R/survBayes.int.basis.R | 3
survBayes-0.2.2/survBayes/R/survBayes.poisson.update.R | 3
survBayes-0.2.2/survBayes/R/survBayes.taylor.R | 3
survBayes-0.2.2/survBayes/R/survBayes.time.basis.R | 3
survBayes-0.2.2/survBayes/data/AA.data.rda |only
survBayes-0.2.2/survBayes/inst/doc/Rplots.pdf |only
survBayes-0.2.2/survBayes/inst/doc/Rplots.ps | 890 +++++++++-
survBayes-0.2.2/survBayes/inst/doc/survBayes.Rnw | 173 -
survBayes-0.2.2/survBayes/inst/doc/survBayes.pdf |binary
survBayes-0.2.2/survBayes/man/AA.data.Rd |only
survBayes-0.2.2/survBayes/man/survBayes.Rd | 20
survBayes-0.2.2/survBayes/man/survBayes.baseline.hazard.Rd | 14
survBayes-0.2.2/survBayes/man/survBayes.control.Rd | 18
survBayes-0.2.2/survBayes/man/survBayes.control.gamma.frailty.Rd | 3
survBayes-0.2.2/survBayes/man/survBayes.control.lognormal.frailty.Rd | 3
32 files changed, 1024 insertions(+), 338 deletions(-)
Author: Nikon Systems Inc.
Diff between rimage versions 0.5-7 dated 2005-01-12 and 0.5-8 dated 2009-06-05
Title: Image Processing Module for R
Description: This package provides functions for image processing,
including sobel filter, rank filters, fft, histogram
equalization, and reading JPEG file. This package requires
fftw-2
rimage-0.5-7/rimage/src/libfftw.a |only
rimage-0.5-7/rimage/src/libjpeg.a |only
rimage-0.5-8/rimage/DESCRIPTION | 19 +++++++++++--------
rimage-0.5-8/rimage/man/cat.Rd | 11 ++++++-----
rimage-0.5-8/rimage/man/plot.imagematrix.Rd | 2 +-
rimage-0.5-8/rimage/man/print.imagematrix.Rd | 2 +-
rimage-0.5-8/rimage/src/fftw_access_func.c | 4 ++--
rimage-0.5-8/rimage/src/laplacian.c | 2 ++
rimage-0.5-8/rimage/src/matrix.cpp | 22 ++++++++++++++++++----
9 files changed, 41 insertions(+), 21 deletions(-)
Author: Kaspar Rufibach
Diff between logcondens versions 1.3.3 dated 2009-03-04 and 1.3.4 dated 2009-06-05
Title: Estimate a Log-Concave Probability Density from iid Observations
Description: Given independent and identically distributed observations
X(1), ..., X(n), this package allows to compute a concave,
piecewise linear function phi on [X(1), X(n)] with knots only
in {X(1), X(2), ..., X(n)} such that L(phi) = sum_{i=1}^n
W(i)*phi(X(i)) - int_{X(1)}^{X(n)} exp(phi(x)) dx is maximal,
for some weights W(1), ..., W(n) s.t. sum_{i=1}^n W(i) = 1.
According to the results in Duembgen and Rufibach (2009), this
function phi maximizes the ordinary log-likelihood sum_{i=1}^n
W(i)*phi(X(i)) under the constraint that phi is concave. The
corresponding function exp(phi) is a log-concave probability
density. Two algorithms are offered: An active set algorithm
and one based on the pool-adjacent-violaters algorithm.
logcondens-1.3.3/logcondens/inst/doc/index.html |only
logcondens-1.3.3/logcondens/inst/doc/logcondens_vignette.pdf |only
logcondens-1.3.4/logcondens/CHANGES | 4 +
logcondens-1.3.4/logcondens/DESCRIPTION | 43 ++++++-----
logcondens-1.3.4/logcondens/R/J00.R | 2
logcondens-1.3.4/logcondens/R/J10.R | 2
logcondens-1.3.4/logcondens/R/J11.R | 2
logcondens-1.3.4/logcondens/R/J20.R | 2
logcondens-1.3.4/logcondens/R/Lhat_eta.R | 2
logcondens-1.3.4/logcondens/R/LocalCoarsen.R | 4 -
logcondens-1.3.4/logcondens/R/LocalConvexity.R | 2
logcondens-1.3.4/logcondens/R/LocalExtend.R | 2
logcondens-1.3.4/logcondens/R/LocalF.R | 2
logcondens-1.3.4/logcondens/R/LocalMLE.R | 7 +
logcondens-1.3.4/logcondens/R/LocalNormalize.R | 2
logcondens-1.3.4/logcondens/R/Local_LL.R | 2
logcondens-1.3.4/logcondens/R/Local_LL_all.R | 2
logcondens-1.3.4/logcondens/R/MLE.R | 11 +-
logcondens-1.3.4/logcondens/R/activeSetLogCon.R | 2
logcondens-1.3.4/logcondens/R/etaphi.R | 2
logcondens-1.3.4/logcondens/R/evaluateLogConDens.R | 10 +-
logcondens-1.3.4/logcondens/R/icmaLogCon.R | 7 +
logcondens-1.3.4/logcondens/R/intECDF.r | 2
logcondens-1.3.4/logcondens/R/intF.r | 11 +-
logcondens-1.3.4/logcondens/R/isoMean.R | 2
logcondens-1.3.4/logcondens/R/phieta.R | 2
logcondens-1.3.4/logcondens/R/qloglin.R | 6 -
logcondens-1.3.4/logcondens/R/quadDeriv.R | 2
logcondens-1.3.4/logcondens/R/quantilesLogConDens.R | 10 +-
logcondens-1.3.4/logcondens/R/robust.R | 4 -
logcondens-1.3.4/logcondens/inst/doc/KRcommands.tex |only
logcondens-1.3.4/logcondens/inst/doc/ims.bst |only
logcondens-1.3.4/logcondens/inst/doc/logcondens.pdf |only
logcondens-1.3.4/logcondens/inst/doc/logcondens.rnw |only
logcondens-1.3.4/logcondens/inst/doc/stat.bib |only
logcondens-1.3.4/logcondens/man/Jfunctions.Rd | 5 -
logcondens-1.3.4/logcondens/man/Lhat_eta.Rd | 2
logcondens-1.3.4/logcondens/man/Local_LL.Rd | 2
logcondens-1.3.4/logcondens/man/Local_LL_all.Rd | 2
logcondens-1.3.4/logcondens/man/MLE.Rd | 2
logcondens-1.3.4/logcondens/man/activeSetLogCon.Rd | 2
logcondens-1.3.4/logcondens/man/activeSetRoutines.Rd | 2
logcondens-1.3.4/logcondens/man/evaluateLogConDens.Rd | 2
logcondens-1.3.4/logcondens/man/icmaLogCon.Rd | 4 -
logcondens-1.3.4/logcondens/man/intECDF.Rd | 2
logcondens-1.3.4/logcondens/man/intF.Rd | 2
logcondens-1.3.4/logcondens/man/isoMean.Rd | 2
logcondens-1.3.4/logcondens/man/logcondens-package.Rd | 10 +-
logcondens-1.3.4/logcondens/man/qloglin.Rd | 2
logcondens-1.3.4/logcondens/man/quadDeriv.Rd | 2
logcondens-1.3.4/logcondens/man/quantilesLogConDens.Rd | 2
logcondens-1.3.4/logcondens/man/reparametrizations.Rd | 2
logcondens-1.3.4/logcondens/man/robust.Rd | 2
53 files changed, 111 insertions(+), 89 deletions(-)
Author: John Maindonald
Title: Data Sets and Functions, supplementary to DAAG
Description: various data sets used in additional exercises for the
book Maindonald, J.H. and Braun, W.J. (2nd edn 2007) "Data
Analysis and Graphics Using R", and for a 'Data Mining' course.
Note that a number of datasets that were in version 0.7-6 of
this package have been transferred to the DAAG package.
Diff between DAAGxtras versions 0.7-6 dated 2009-04-19 and 0.7-7 dated 2009-06-05
DAAGxtras-0.7-6/DAAGxtras/R/dataFile.R |only DAAGxtras-0.7-6/DAAGxtras/R/excessRisk.R |only DAAGxtras-0.7-6/DAAGxtras/data/DAAGxdb.RData |only DAAGxtras-0.7-6/DAAGxtras/data/bomregions.RData |only DAAGxtras-0.7-6/DAAGxtras/data/cps1.RData |only DAAGxtras-0.7-6/DAAGxtras/data/cps2.RData |only DAAGxtras-0.7-6/DAAGxtras/data/cps3.RData |only DAAGxtras-0.7-6/DAAGxtras/data/cricketer.RData |only DAAGxtras-0.7-6/DAAGxtras/data/edcCO2.RData |only DAAGxtras-0.7-6/DAAGxtras/data/edcT.RData |only DAAGxtras-0.7-6/DAAGxtras/data/gaba.RData |only DAAGxtras-0.7-6/DAAGxtras/data/grog.RData |only DAAGxtras-0.7-6/DAAGxtras/data/hotspots.RData |only DAAGxtras-0.7-6/DAAGxtras/data/hotspots2006.RData |only DAAGxtras-0.7-6/DAAGxtras/data/intersalt.RData |only DAAGxtras-0.7-6/DAAGxtras/data/nassCDS.RData |only DAAGxtras-0.7-6/DAAGxtras/data/nasshead.RData |only DAAGxtras-0.7-6/DAAGxtras/data/nihills.RData |only DAAGxtras-0.7-6/DAAGxtras/data/nswdemo.RData |only DAAGxtras-0.7-6/DAAGxtras/data/nswpsid1.RData |only DAAGxtras-0.7-6/DAAGxtras/data/progression.RData |only DAAGxtras-0.7-6/DAAGxtras/data/psid1.RData |only DAAGxtras-0.7-6/DAAGxtras/data/psid2.RData |only DAAGxtras-0.7-6/DAAGxtras/data/psid3.RData |only DAAGxtras-0.7-6/DAAGxtras/data/worldRecords.RData |only DAAGxtras-0.7-6/DAAGxtras/data/zzDAAGxdb.RData |only DAAGxtras-0.7-6/DAAGxtras/inst/doc/rockArt.aux |only DAAGxtras-0.7-6/DAAGxtras/inst/doc/rockArt.log |only DAAGxtras-0.7-6/DAAGxtras/man/DAAGxdb.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/bomregions.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/cps1.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/cps2.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/cps3.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/cricketer.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/datafile.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/edcCO2.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/edcT.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/excessRisk.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/gaba.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/grog.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/hotspots.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/hotspots2006.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/intersalt.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/nassCDS.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/nasshead.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/nihills.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/nswdemo.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/nswpsid1.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/progression.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/psid1.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/psid2.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/psid3.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/recordTimes.Rd |only DAAGxtras-0.7-6/DAAGxtras/man/zzDAAGxdb.Rd |only DAAGxtras-0.7-7/DAAGxtras/DESCRIPTION | 32 ++++++---------------- DAAGxtras-0.7-7/DAAGxtras/R/zzz.R |only 56 files changed, 9 insertions(+), 23 deletions(-)
Author: John Maindonald and W. John Braun
Title: Data Analysis And Graphics data and functions
Description: various data sets used in examples and exercises in the
book Maindonald, J.H. and Braun, W.J. (2003, 2007) "Data
Analysis and Graphics Using R".
Diff between DAAG versions 0.99-2 dated 2009-05-24 and 0.99-3 dated 2009-06-05
DAAG-0.99-2/DAAG/CVbinary.R |only DAAG-0.99-3/DAAG/DESCRIPTION | 10 +++++----- DAAG-0.99-3/DAAG/INDEX | 5 +++++ DAAG-0.99-3/DAAG/R/bestset.noise.R |only DAAG-0.99-3/DAAG/R/bestsetNoise.R | 6 +++--- DAAG-0.99-3/DAAG/R/bsnCV.R |only DAAG-0.99-3/DAAG/R/excessRisk.R |only DAAG-0.99-3/DAAG/R/sampdist.R |only DAAG-0.99-3/DAAG/data/nswpsid1.RData |only DAAG-0.99-3/DAAG/man/bestsetNoise.Rd | 27 ++++++++++++++++++++++++--- DAAG-0.99-3/DAAG/man/excessRisk.Rd |only DAAG-0.99-3/DAAG/man/nswpsid1.Rd |only DAAG-0.99-3/DAAG/man/sampdist.Rd |only 13 files changed, 37 insertions(+), 11 deletions(-)
Author: Kaspar Rufibach
Diff between smoothtail versions 1.1.2 dated 2008-08-25 and 1.1.3 dated 2009-06-04
Title: Smooth Estimation of GPD Shape Parameter
Description: Given independent and identically distributed observations
X(1), ..., X(n) from a Generalized Pareto distribution with
shape parameter gamma in [-1,0], this package offers several
estimates to compute estimates of gamma. The estimates are
based on the principle of replacing the order statistics by
quantiles of a distribution function based on a log--concave
density function. This procedure is justified by the fact that
the GPD density is log--concave for gamma in [-1,0].
CHANGES | 4 ++++
DESCRIPTION | 39 +++++++++++++++++++++++----------------
R/dgpd.R | 2 +-
R/falk.R | 2 +-
R/falkMVUE.R | 2 +-
R/generalizedPick.r | 6 +++---
R/pgpd.R | 2 +-
R/pickands.R | 2 +-
R/qgpd.R | 2 +-
R/rgpd.R | 2 +-
man/falk.Rd | 6 +++---
man/falkMVUE.Rd | 6 +++---
man/generalizedPick.Rd | 6 +++---
man/gpd.Rd | 4 ++--
man/lambdaGenPick.Rd | 6 +++---
man/pickands.Rd | 6 +++---
man/smoothtail-package.Rd | 20 ++++++++++----------
17 files changed, 64 insertions(+), 53 deletions(-)
Author: Han Lin Shang and Rob J Hyndman
Title: Rainbow plots, functional bagplot, functional HDR boxplot
Description: Functions and datasets for functional data display and
outlier detection.
Diff between rainbow versions 1.0 dated 2009-05-29 and 1.1 dated 2009-06-04
.fsLockFile |only DESCRIPTION | 11 ++++++----- R/bbag.R | 4 ++-- R/bhdr.R | 4 ++-- R/fts.R | 9 ++++++++- R/plot.fd.R | 4 ++-- 6 files changed, 20 insertions(+), 12 deletions(-)
Author: Torsten Hothorn, Kurt Hornik, Carolin Strobl and Achim Zeileis
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning. The
core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems,
including nominal, ordinal, numeric, censored as well as
multivariate response variables and arbitrary measurement
scales of the covariates. Based on conditional inference trees,
cforest() provides an implementation of Breiman's random
forests. The function mob() implements an algorithm for
recursive partitioning based on parametric models (e.g. linear
models, GLMs or survival regression) employing parameter
instability tests for split selection. Extensible functionality
for visualizing tree-structured regression models is available.
Diff between party versions 0.9-996 dated 2009-03-27 and 0.9-997 dated 2009-06-04
party-0.9-996/party/CHANGES |only party-0.9-997/party/DESCRIPTION | 6 party-0.9-997/party/NEWS |only party-0.9-997/party/R/MOB.R | 6 party-0.9-997/party/inst/doc/MOB.Rnw | 1 party-0.9-997/party/inst/doc/MOB.pdf | 600 ++++++++---------- party-0.9-997/party/inst/doc/party.pdf |binary party-0.9-997/party/man/RandomForest-class.Rd | 6 party-0.9-997/party/tests/Examples/party-Ex.Rout.save | 22 9 files changed, 322 insertions(+), 319 deletions(-)
Author: Torsten Hothorn, Kurt Hornik, Mark A. van de Wiel and Achim
Zeileis
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general
independence problem including two-sample, K-sample
(non-parametric ANOVA), correlation, censored, ordered and
multivariate problems.
Diff between coin versions 1.0-4 dated 2009-05-11 and 1.0-5 dated 2009-06-04
coin-1.0-4/coin/CHANGES |only coin-1.0-5/coin/DESCRIPTION | 6 +++--- coin-1.0-5/coin/NEWS |only coin-1.0-5/coin/inst/doc/LegoCondInf.Rnw | 2 +- coin-1.0-5/coin/inst/doc/LegoCondInf.pdf |binary coin-1.0-5/coin/inst/doc/MAXtest.pdf |binary coin-1.0-5/coin/inst/doc/coin.pdf |binary coin-1.0-5/coin/inst/doc/coin_implementation.pdf |binary coin-1.0-5/coin/man/MaxTypeIndependenceTestStatistic-class.Rd | 1 - coin-1.0-5/coin/man/QuadTypeIndependenceTestStatistic-class.Rd | 1 - coin-1.0-5/coin/man/ScalarIndependenceTestStatistic-class.Rd | 1 - 11 files changed, 4 insertions(+), 7 deletions(-)
Author: Dimitris Rizopoulos
Diff between bootStepAIC versions 1.1-1 dated 2008-12-15 and 1.2-0 dated 2009-06-04
Title: Bootstrap stepAIC
Description: Model selection by bootstrapping the stepAIC() procedure.
DESCRIPTION | 26 ++++++++++++++------------
R/boot.stepAIC.R | 6 +++---
R/print.BootStep.R | 2 +-
3 files changed, 18 insertions(+), 16 deletions(-)
Author: M Henry H Stevens
Title: Functions and data for the forthcoming, A Primer of Ecology with
R
Description: Functions are primarily functions for systems of ordinary
differential equations, difference equations, and eigenanalysis
and projection of demographic matrices; data are for examples.
Diff between primer versions 0.1 dated 2009-03-27 and 0.2 dated 2009-06-03
primer-0.1/primer/R/myQ.R |only primer-0.1/primer/man/myQ.Rd |only primer-0.2/primer/DESCRIPTION | 8 ++++---- primer-0.2/primer/R/chesson.R |only primer-0.2/primer/man/BSsucc.Rd | 11 ++++++----- primer-0.2/primer/man/CandG.Rd | 8 +++++--- primer-0.2/primer/man/ClostExp.Rd | 8 +++++--- primer-0.2/primer/man/DemoBoot.Rd | 13 +++++++------ primer-0.2/primer/man/DemoInfo.Rd | 8 ++++---- primer-0.2/primer/man/MetaSim.Rd | 18 ++++++++++++------ primer-0.2/primer/man/PopSim.Rd | 2 +- primer-0.2/primer/man/ProjMat.Rd | 8 ++++---- primer-0.2/primer/man/SIR.Rd | 10 ++++++---- primer-0.2/primer/man/SIRbd.Rd | 15 ++++++++++----- primer-0.2/primer/man/SIRf.Rd | 11 +++++++---- primer-0.2/primer/man/chesson.Rd |only primer-0.2/primer/man/clogistic.Rd | 22 +++++++++++++++++----- primer-0.2/primer/man/compcol.Rd | 12 +++++++----- primer-0.2/primer/man/compcolM.Rd | 11 +++++++---- primer-0.2/primer/man/dlogistic.Rd | 4 ++-- primer-0.2/primer/man/dlvcomp2.Rd | 11 +++++++---- primer-0.2/primer/man/fruitdat.Rd | 8 +++++--- primer-0.2/primer/man/gotelli.Rd | 16 ++++++++-------- primer-0.2/primer/man/hanski.Rd | 9 +++++---- primer-0.2/primer/man/igp.Rd | 10 ++++++---- primer-0.2/primer/man/lande.Rd | 10 +++++----- primer-0.2/primer/man/levins.Rd | 12 ++++-------- primer-0.2/primer/man/lvcomp2.Rd | 7 +++---- primer-0.2/primer/man/lvcomp3.Rd | 6 +++--- primer-0.2/primer/man/lvcompg.Rd | 10 +++++----- primer-0.2/primer/man/pimmlawton.Rd | 31 +++++++++++++++++++------------ primer-0.2/primer/man/predpreyLV.Rd | 6 +++--- primer-0.2/primer/man/predpreyRM.Rd | 12 ++++++++---- primer-0.2/primer/man/primer-package.Rd | 7 ++++--- primer-0.2/primer/man/ross.Rd | 6 ++++-- primer-0.2/primer/man/scheffer.Rd | 13 +++++++++---- primer-0.2/primer/man/seeddat.Rd | 9 ++++++--- primer-0.2/primer/man/sparrows.Rd | 6 +++--- primer-0.2/primer/man/stagedat.Rd | 4 ++-- primer-0.2/primer/man/succniche.Rd | 13 ++++++++----- primer-0.2/primer/man/thetalogistic.Rd | 6 ++++-- primer-0.2/primer/man/weeds.Rd | 17 ++++++++++------- 42 files changed, 235 insertions(+), 163 deletions(-)
Author: Karel Van den Meersche
Diff between BCE versions 1.1 dated 2008-05-08 and 1.3 dated 2009-06-03
Title: Bayesian composition estimator: estimating sample (taxonomic)
composition from biomarker data
Description: Function to estimates taxonomic compositions from
biomarker data, using a Bayesian approach.
DESCRIPTION | 27 +++++++++++++++++----------
NAMESPACE | 2 +-
R/BCE.r | 19 +++++++++++--------
R/tlsce.r |only
man/BCE.Rd | 29 +++++++++++++++++------------
man/export.bce.Rd | 2 +-
man/pairs.bce.Rd | 6 +++---
man/tlsce.Rd |only
8 files changed, 50 insertions(+), 35 deletions(-)
Author: Rasmus E. Benestad
Diff between clim.pact versions 2.2-35 dated 2009-05-27 and 2.2-36 dated 2009-06-03
Title: Climate analysis and empirical-statistical downscaling (ESD)
package for monthly and daily data.
Description: The package contains R functions for retrieving data,
making climate analysis and downscaling of monthly mean and
daily mean global climate scenarios. (Windows-users may need to
obtain the 'ncdf' package from URL
'http://www.stats.ox.ac.uk/pub/RWin/' to get clim.pact to
work). The package is also described in the book
'Empirical-Statistical Downscaling
(http://www.worldscibooks.com/environsci/6908.html)
DESCRIPTION | 8 ++---
R/ds.R | 1
R/eof.R | 26 +++++++++++++++---
R/map.R | 5 +++
R/objDS.R | 40 +++++++++++++++-------------
R/plotDS.R | 8 ++++-
R/plotEOF.R | 79 +++++++++++++++++++++++++++++++--------------------------
man/objDS.Rd | 3 +-
man/plotEOF.Rd | 3 +-
9 files changed, 106 insertions(+), 67 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Mariano Devoto, Jochen Fruend, Jose Iriondo and Diego Vazquez,
also based on C-code developed by Nils Bluethgen and by Miguel
Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 0.91 dated 2009-05-06 and 0.92 dated 2009-06-03
bipartite-0.91/bipartite/Jochentest.txt |only bipartite-0.91/bipartite/vazquez_et_al_ms.pdf |only bipartite-0.92/bipartite/DESCRIPTION | 16 - bipartite-0.92/bipartite/R/empty.R | 13 bipartite-0.92/bipartite/R/functspec.r | 3 bipartite-0.92/bipartite/R/networklevel.R | 3 bipartite-0.92/bipartite/R/nodespec.r | 4 bipartite-0.92/bipartite/R/visweb.R | 296 ++++++++++------------ bipartite-0.92/bipartite/R/wine.r | 39 ++ bipartite-0.92/bipartite/R/zzz.R | 4 bipartite-0.92/bipartite/man/C.score.Rd | 2 bipartite-0.92/bipartite/man/bipartite-package.Rd | 14 - bipartite-0.92/bipartite/man/networklevel.Rd | 2 bipartite-0.92/bipartite/man/swap.web.Rd | 2 bipartite-0.92/bipartite/man/vazquez.example.rd | 18 - bipartite-0.92/bipartite/man/visweb.Rd | 8 bipartite-0.92/bipartite/man/wine.rd | 14 - 17 files changed, 227 insertions(+), 211 deletions(-)
Author: Michael J. Kane and John W. Emerson
Title: Manage massive matrices in R using C++, with support for shared
memory and memory-mapped files.
Description: Use C++ to create, store, access, and manipulate massive
matrices. Matrices may optionally be allocated to shared
memory and/or may use memory-mapped files.
Diff between bigmemory versions 3.6 dated 2009-05-04 and 3.7 dated 2009-06-03
bigmemory-3.6/bigmemory/R/is.filebacked.R |only bigmemory-3.6/bigmemory/README |only bigmemory-3.6/bigmemory/SHM |only bigmemory-3.6/bigmemory/src/writedescr.txt |only bigmemory-3.7/bigmemory/DESCRIPTION | 8 bigmemory-3.7/bigmemory/NAMESPACE | 4 bigmemory-3.7/bigmemory/R/bigmatrix.R | 414 +++++++++------------- bigmemory-3.7/bigmemory/R/bigmatrixLib.R | 6 bigmemory-3.7/bigmemory/R/bigmatrixShm.R | 122 ++++-- bigmemory-3.7/bigmemory/configure.Rout | 2 bigmemory-3.7/bigmemory/man/big.matrix-class.Rd | 5 bigmemory-3.7/bigmemory/man/big.matrix.Rd | 18 bigmemory-3.7/bigmemory/man/big.sub.matrix.Rd |only bigmemory-3.7/bigmemory/man/bigmemory-package.Rd | 4 bigmemory-3.7/bigmemory/man/colmean.Rd | 4 bigmemory-3.7/bigmemory/man/write.big.matrix.Rd | 12 bigmemory-3.7/bigmemory/src/BigMatrix.cpp | 291 +++++++++------ bigmemory-3.7/bigmemory/src/BigMatrix.h | 96 ++++- bigmemory-3.7/bigmemory/src/BigMatrixAccessor.hpp | 11 bigmemory-3.7/bigmemory/src/CbigmemoRy.cpp | 181 +++++++-- bigmemory-3.7/bigmemory/src/CbigmemoRyLib.cpp | 42 +- bigmemory-3.7/bigmemory/src/TODO.txt |only 22 files changed, 712 insertions(+), 508 deletions(-)
Author: Achim Zeileis, Kurt Hornik
Title: CRAN Task Views
Description: Server-side and client-side tools for task views to
CRAN-style repositories
Diff between ctv versions 0.5-1 dated 2009-02-11 and 0.5-2 dated 2009-06-03
COPYRIGHTS | 2 DESCRIPTION | 12 NEWS | 5 R/ctv-server.R | 14 inst/ctv/Bayesian.ctv | 599 +++++++++++-------------- inst/ctv/ChemPhys.ctv | 4 inst/ctv/Cluster.ctv | 142 ++++- inst/ctv/Distributions.ctv | 32 - inst/ctv/Distributions.html |only inst/ctv/Econometrics.ctv | 17 inst/ctv/Environmetrics.ctv | 4 inst/ctv/ExperimentalDesign.ctv | 33 - inst/ctv/Finance.ctv | 157 ++++-- inst/ctv/HighPerformanceComputing.ctv | 90 ++- inst/ctv/MedicalImaging.ctv |only inst/ctv/Multivariate.ctv | 17 inst/ctv/Optimization.ctv | 40 + inst/ctv/Psychometrics.ctv | 28 + inst/ctv/SocialSciences.ctv | 3 inst/ctv/Spatial.ctv | 98 ++-- inst/ctv/Survival.ctv | 814 +++++++++++++++++++++------------- inst/ctv/TimeSeries.ctv | 27 - inst/ctv/gR.ctv | 222 +++++---- inst/doc/ctv-howto.pdf |binary man/ctv-server.Rd | 2 25 files changed, 1439 insertions(+), 923 deletions(-)
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Title: Tools for parsing and generating XML within R and S-Plus.
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Diff between XML versions 2.3-0 dated 2009-03-06 and 2.5-0 dated 2009-06-02
XML-2.3-0/XML/src/catalog.c |only XML-2.5-0/XML/Changes | 29 + XML-2.5-0/XML/DESCRIPTION | 70 +--- XML-2.5-0/XML/INSTALL | 2 XML-2.5-0/XML/NAMESPACE | 54 ++- XML-2.5-0/XML/R/XMLClasses.R | 52 ++- XML-2.5-0/XML/R/error.R | 2 XML-2.5-0/XML/R/htmlParse.R | 10 XML-2.5-0/XML/R/libxmlFeatures.R |only XML-2.5-0/XML/R/namespaces.R |only XML-2.5-0/XML/R/nodeAccessors.R | 2 XML-2.5-0/XML/R/parseDTD.R | 4 XML-2.5-0/XML/R/parser.R |only XML-2.5-0/XML/R/readHTMLTable.R |only XML-2.5-0/XML/R/saveXML.R |only XML-2.5-0/XML/R/schema.S | 2 XML-2.5-0/XML/R/tree.R | 19 - XML-2.5-0/XML/R/version.R | 4 XML-2.5-0/XML/R/xmlEventParse.R | 2 XML-2.5-0/XML/R/xmlInternalSource.R | 19 + XML-2.5-0/XML/R/xmlNodes.R | 174 +++------- XML-2.5-0/XML/R/xmlString.R |only XML-2.5-0/XML/R/xmlTreeParse.R | 29 - XML-2.5-0/XML/configure | 165 ++++++++- XML-2.5-0/XML/configure.in | 55 ++- XML-2.5-0/XML/configure.win | 7 XML-2.5-0/XML/inst/exampleData/cleanNamespace.xml |only XML-2.5-0/XML/inst/exampleData/entity1.xml | 2 XML-2.5-0/XML/inst/exampleData/entity3.html |only XML-2.5-0/XML/inst/exampleData/entity4.xml |only XML-2.5-0/XML/inst/exampleData/namespaces2.xml |only XML-2.5-0/XML/inst/exampleData/xinclude |only XML-2.5-0/XML/inst/expat |only XML-2.5-0/XML/inst/libxml |only XML-2.5-0/XML/man/XMLInternalDocument.Rd | 1 XML-2.5-0/XML/man/addChildren.Rd | 1 XML-2.5-0/XML/man/getXMLErrors.Rd | 2 XML-2.5-0/XML/man/isXMLString.Rd |only XML-2.5-0/XML/man/libxmlVersion.Rd | 33 + XML-2.5-0/XML/man/newXMLDoc.Rd | 14 XML-2.5-0/XML/man/readHTMLTable.Rd |only XML-2.5-0/XML/man/removeXMLNamespaces.Rd |only XML-2.5-0/XML/man/saveXML.Rd | 6 XML-2.5-0/XML/man/supportsExpat.Rd | 2 XML-2.5-0/XML/man/xmlEventParse.Rd | 19 + XML-2.5-0/XML/man/xmlParseDoc.Rd |only XML-2.5-0/XML/man/xmlSource.Rd | 1 XML-2.5-0/XML/man/xmlTreeParse.Rd | 9 XML-2.5-0/XML/src/DocParse.c | 149 ++++++++ XML-2.5-0/XML/src/DocParse.h | 10 XML-2.5-0/XML/src/HTMLParse.c | 2 XML-2.5-0/XML/src/Makevars.in | 2 XML-2.5-0/XML/src/RS_XML.h | 3 XML-2.5-0/XML/src/RUtils.c | 12 XML-2.5-0/XML/src/Rcatalog.c |only XML-2.5-0/XML/src/Utils.c | 35 +- XML-2.5-0/XML/src/Utils.h | 2 XML-2.5-0/XML/src/XMLEventParse.c | 2 XML-2.5-0/XML/src/XMLTree.c | 379 +++++++++++++++++++++- XML-2.5-0/XML/src/libxmlFeatures.c |only XML-2.5-0/XML/src/xmlsecurity.c |only XML-2.5-0/XML/src/xpath.c | 24 + 62 files changed, 1128 insertions(+), 283 deletions(-)
Author: Daniel B. Wright
Title: Signal detection theory and alternatives
Description: Signal detection theory and alternatives
Diff between sdtalt versions 0.1-0.1 dated 2009-02-23 and 1.0-1 dated 2009-06-02
sdtalt-0.1-0.1/sdtalt/data/ayers.rda |only sdtalt-0.1-0.1/sdtalt/data/memrec.rda |only sdtalt-0.1-0.1/sdtalt/man/ayers.Rd |only sdtalt-0.1-0.1/sdtalt/man/memrec.Rd |only sdtalt-1.0-1/sdtalt/DESCRIPTION | 29 +++++-------- sdtalt-1.0-1/sdtalt/R/mlmsdt.R | 66 +++++++++++++----------------- sdtalt-1.0-1/sdtalt/R/sdt.R | 13 ++--- sdtalt-1.0-1/sdtalt/man/confcontr.Rd | 9 +--- sdtalt-1.0-1/sdtalt/man/confexp.Rd | 6 +- sdtalt-1.0-1/sdtalt/man/face4.Rd | 7 +-- sdtalt-1.0-1/sdtalt/man/face4b.Rd | 6 +- sdtalt-1.0-1/sdtalt/man/face4w.Rd | 6 +- sdtalt-1.0-1/sdtalt/man/facec.Rd | 7 +-- sdtalt-1.0-1/sdtalt/man/fne.Rd | 4 - sdtalt-1.0-1/sdtalt/man/format2to4.Rd | 8 +-- sdtalt-1.0-1/sdtalt/man/format4to2.Rd | 6 +- sdtalt-1.0-1/sdtalt/man/mlmsdt.Rd | 26 +++++------ sdtalt-1.0-1/sdtalt/man/sdt.Rd | 52 +++++++++++------------ sdtalt-1.0-1/sdtalt/man/sdtalt-package.Rd | 17 ++++--- 19 files changed, 123 insertions(+), 139 deletions(-)
Author: Martin Elff
Title: Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
Diff between memisc versions 0.95-18 dated 2009-06-02 and 0.95-19 dated 2009-06-02
DESCRIPTION | 6 +++--- R/item-methods.R | 14 +++++++------- inst/NEWS | 10 ++++++---- inst/doc/anes48.pdf |binary 4 files changed, 16 insertions(+), 14 deletions(-)
Author: Ann Lee, Diana Luca, Bert Klei, Bernie Devlin, Kathryn Roeder
Title: Discovering Genetic Ancestry Using Spectral Graph Theory
Description: Discovering Genetic Ancestry Using Spectral Graph Theory
Diff between SpectralGEM versions 0.2 dated 2009-05-24 and 0.2.1 dated 2009-06-02
DESCRIPTION | 6 +++--- R/Spectral-GEM.R | 5 +++-- 2 files changed, 6 insertions(+), 5 deletions(-)
Author: Jonathan M. Lees
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to analyze seismic data, via,
spectrum analysis, wavelet transforms, particle motion,
hodograms.
Diff between RSEIS versions 2.1-4 dated 2009-03-16 and 2.1-6 dated 2009-06-02
DESCRIPTION | 6 +-- R/CHOP.SEISN.R | 6 +++ R/DISPLACE.SEISN.R | 3 + R/FILT.SEISN.R | 8 ++++- R/Mine.seis.R | 12 +++++-- R/PICK.GEN.R | 7 +++- R/PLOT.SEISN.R | 2 + R/SEISNtime.R | 22 +++++++++++++- R/VELOCITY.SEISN.R | 3 + R/ZOOM.SEISN.R | 2 + R/attime12.R |only R/butfilt.R | 19 +++++++++--- R/choosfilt.R | 40 ++++++++++++++++++++++++-- R/distseisnXY.R |only R/filedatetime.R | 12 +++++-- R/filterstamp.R |only R/makeDB.R | 4 +- R/matsquiggle.R |only R/pickhandler.R | 3 + R/rangedatetime.R |only R/setwpix.R |only R/setypx.R |only R/varsquig.R | 12 ++++--- R/varsquiggle.R | 77 +++++++++++++++++++++++++++++++++++++++------------ R/view.seis.R | 54 ++++++++++++++++++++++++++++++++++- R/xtract.trace.R |only inst/doc/hodo.pdf |binary inst/doc/rseis.pdf |binary man/Mine.seis.Rd | 4 +- man/PICK.GEN.Rd | 11 +++++-- man/RSEIS-package.Rd | 4 +- man/attime12.Rd |only man/butfilt.Rd | 19 ++++++++---- man/distseisnXY.Rd |only man/filterstamp.Rd |only man/matsquiggle.Rd |only man/rangedatetime.Rd |only man/setwpix.Rd |only man/setypx.Rd |only man/varsquig.Rd | 11 +++---- man/varsquiggle.Rd | 16 ++++++++-- man/view.seis.Rd | 41 +++++++++++++++++++++++++++ man/xtract.trace.Rd |only src/sac.h | 2 - 44 files changed, 330 insertions(+), 70 deletions(-)
Author: Jonathan M. Lees
Title: Topographic and Geologic Mapping
Description: Set of routines for making Map Projections (forward and
inverse), Topographic Maps, Perspective plots, Geological Maps,
geological map symbols, geological databases, interactive
plotting and selection of focus regions.
Diff between GEOmap versions 1.4-0 dated 2009-01-08 and 1.4-2 dated 2009-06-02
DESCRIPTION | 11 +++++++-- R/GLOB.XY.R | 8 +++++++ R/Lll2xyz.R |only R/Lxyz2ll.R |only R/NSarrow.R |only R/X.prod.R |only R/XY.GLOB.R | 4 +++ R/along.great.R |only R/distaz.R |only R/dms.R |only R/getgreatarc.R | 57 ++++++++++++++------------------------------------ R/getnicetix.R |only R/getsplineG.R |only R/gmat.R |only R/goodticdivs.R |only R/ll2xyz.R |only R/maps2GEOmap.R |only R/niceLLtix.R |only R/plotnicetix.R |only R/plotusa.R | 13 +++++++---- R/rotateGEOmap.R |only R/rotdelta4.R |only R/rotmat2D.R |only R/rotx4.R |only R/roty4.R |only R/setPROJ.R | 15 +++++++++---- R/trans4.R |only R/utm.wgs84.ll.R |only R/utm.wgs84.xy.R |only R/xyz2ll.R |only demo/weathermap.R | 8 +++---- inst/doc/GEOmap.pdf |binary man/GEOmap-package.Rd | 4 +-- man/Lll2xyz.Rd |only man/Lxyz2ll.Rd |only man/Markup.Rd | 7 +++++- man/NSarrow.Rd |only man/SynAnticline.Rd | 2 - man/X.prod.Rd |only man/along.great.Rd |only man/distaz.Rd |only man/dms.Rd |only man/faultdip.Rd | 4 +-- man/faultperp.Rd | 2 - man/getgreatarc.Rd | 2 - man/getnicetix.Rd |only man/getsplineG.Rd |only man/gmat.Rd |only man/goodticdivs.Rd |only man/horseshoe.Rd | 4 +-- man/ll2xyz.Rd |only man/maps2GEOmap.Rd |only man/niceLLtix.Rd |only man/perpen.Rd | 2 - man/plotnicetix.Rd |only man/plotusa.Rd | 12 +++++++++- man/rotateGEOmap.Rd |only man/rotdelta4.Rd |only man/rotmat2D.Rd |only man/rotx4.Rd |only man/roty4.Rd |only man/setMarkup.Rd | 6 ++++- man/trans4.Rd |only man/utm.sphr.ll.Rd | 1 man/utm.sphr.xy.Rd | 1 man/xyz2ll.Rd |only 66 files changed, 95 insertions(+), 68 deletions(-)
Author: William Revelle
Diff between psych versions 1.0-70 dated 2009-05-25 and 1.0-72 dated 2009-06-02
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale
construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. Functions for simulating particular item and test
structures are included. Several functions serve as a useful
front end for structural equation modeling. For more
information, see the personality-project.org/r webpage.
psych-1.0-70/psych/man/factor.pa.Rd |only
psych-1.0-72/psych/CHANGES | 11
psych-1.0-72/psych/DESCRIPTION | 8
psych-1.0-72/psych/NAMESPACE | 5
psych-1.0-72/psych/R/VSS.R | 6
psych-1.0-72/psych/R/fa.R |only
psych-1.0-72/psych/R/factor.minres.R | 1
psych-1.0-72/psych/R/factor.pa.R | 17
psych-1.0-72/psych/R/factor.scores.R |only
psych-1.0-72/psych/R/factor.stats.R | 3
psych-1.0-72/psych/R/factor.wls.R |only
psych-1.0-72/psych/R/omega.R | 6
psych-1.0-72/psych/R/phi.demo.R | 9
psych-1.0-72/psych/R/poly.mat.R | 2
psych-1.0-72/psych/R/polychor.matrix.R | 6
psych-1.0-72/psych/R/polycor.matrix.R | 2
psych-1.0-72/psych/R/principal.R | 2
psych-1.0-72/psych/R/print.psych.R | 269 -
psych-1.0-72/psych/R/print.psych.fa.R |only
psych-1.0-72/psych/R/print.psych.iclust.R |only
psych-1.0-72/psych/R/print.psych.omega.R |only
psych-1.0-72/psych/R/print.psych.stats.R |only
psych-1.0-72/psych/R/print.psych.vss.R |only
psych-1.0-72/psych/R/schmid.R | 9
psych-1.0-72/psych/R/smc.R | 2
psych-1.0-72/psych/R/test.psych.r | 6
psych-1.0-72/psych/inst/NEWS | 23
psych-1.0-72/psych/inst/doc/overview.pdf | 4378 +++++++++++++-------------
psych-1.0-72/psych/inst/doc/psych_for_sem.pdf | 4099 ++++++++++++------------
psych-1.0-72/psych/man/00.psych-package.Rd | 9
psych-1.0-72/psych/man/VSS.Rd | 2
psych-1.0-72/psych/man/fa.Rd |only
psych-1.0-72/psych/man/factor.stats.Rd | 7
psych-1.0-72/psych/man/omega.Rd | 4
psych-1.0-72/psych/man/phi.demo.Rd | 12
psych-1.0-72/psych/man/poly.mat.Rd | 4
psych-1.0-72/psych/man/polychor.matrix.Rd | 5
psych-1.0-72/psych/man/schmid.Rd | 2
38 files changed, 4431 insertions(+), 4478 deletions(-)
Author: Reinhold Hatzinger
Title: Utilities to fit paired comparison models for preferences
Description: Generates design matrix for analysing real paired
comparisons and derived paired comparison data (Likert type
items / ratings or rankings) using a loglinear approach. Fits
loglinear Bradley-Terry model (LLBT) exploting an eliminate
feature. Computes pattern models for paired comparisons,
rankings, and ratings. Some treatment of missing values (MCAR
and MNAR).
Diff between prefmod versions 0.8-14 dated 2009-04-16 and 0.8-15 dated 2009-06-02
DESCRIPTION | 12 ++++++------ NAMESPACE | 2 +- R/covdesign.R | 7 +++++-- R/llbt.worth.R | 24 +++++++----------------- R/patt.worth.R | 26 ++++++++------------------ R/plotworth.R | 15 +++++++++------ R/splitCovs.R | 30 +++++++++++++++++++----------- man/plotworth.Rd | 13 +++++++------ man/prefmod-package.Rd | 4 ++-- man/salad.Rd | 8 ++++---- 10 files changed, 68 insertions(+), 73 deletions(-)
Author: Jonathan P. Weeks
Diff between plink versions 1.1-1 dated 2009-05-28 and 1.1-2 dated 2009-06-02
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a
nonequivalent groups common item design. The unidimensional
methods include the Mean/Mean, Mean/Sigma, Haebara, and
Stocking-Lord methods for dichotomous (1PL, 2PL and 3PL) and/or
polytomous (graded response, partial credit/generalized partial
credit, nominal, and multiple-choice model) items. The
multidimensional methods include the Reckase-Martineau method
and extensions of the Haebara and Stocking-Lord method using a
single dilation parameter, multiple dilation parameters, or the
Oshima, Davey, & Lee approach for multidimensional extensions
of all the unidimensional dichotomous and polytomous item
response models. The package also includes functions for
importing item and/or ability parameters from common IRT
software and ploting item characteristic/category curves or
surfaces and vector plots.
DESCRIPTION | 8 +++----
R/plot.R | 55 +++++++++++++++++++++++++++++++++++++++------------
R/read.bilog.R | 7 ++----
R/sep.pars.R | 14 +++++++++++-
inst/CITATION | 4 +--
inst/NEWS | 29 ++++++++++++++++++++------
man/plot.irt.prob.Rd | 4 +--
7 files changed, 88 insertions(+), 33 deletions(-)
Author: Robert B. Gramacy
Diff between monomvn versions 1.7-1 dated 2009-05-27 and 1.7-2 dated 2009-06-02
Title: Estimation for multivariate normal and Student-t data with
monotone missingness
Description: Estimation of multivariate normal and student-t data of
arbitrary dimension where the pattern of missing data is
monotone. Through the use of parsimonious/shrinkage regressions
(plsr, pcr, lasso, ridge, etc.), where standard regressions
fail, the package can handle a nearly arbitrary amount of
missing data. The current version supports maximum likelihood
inference and a full Bayesian approach employing scale-mixtures
for the lasso (double-exponential) prior and Student-t errors.
Monotone data augmentation extends this Bayesian approach to
arbitrary missingness patterns. A fully functional standalone
interface to the Bayesian lasso (from Park & Casella) and ridge
regression with model selection via Reversible Jump, and
student-t errors (from Geweke) is also provided
ChangeLog | 8 ++++++++
DESCRIPTION | 8 ++++----
src/blasso.cc | 42 +++++++++++++++++++++++++-----------------
src/matrix.c | 42 +++++++++++++++++++++++++++++++++++++++++-
src/matrix.h | 2 ++
5 files changed, 80 insertions(+), 22 deletions(-)
Author: Martin Elff
Title: Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
Diff between memisc versions 0.95-17 dated 2009-03-06 and 0.95-18 dated 2009-06-02
DESCRIPTION | 32 +++++++++++++++++++------------- R/sample_methods.R | 6 +++--- inst/NEWS |only inst/doc/anes48.pdf |binary 4 files changed, 22 insertions(+), 16 deletions(-)
Author: J. O. Ramsay
Diff between fda versions 2.1.1 dated 2009-03-02 and 2.1.2 dated 2009-06-02
Title: Functional Data Analysis
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer. They were
ported from earlier versions in Matlab and S-PLUS. An
introduction appears in Ramsay, J. O., Hooker, Giles, and
Graves, Spencer (2009) Functional Data Analysis with R and
Matlab (Springer). The package includes data sets and script
files working many examples including all but one of the 76
figures in this latter book.
fda-2.1.1/fda/R/as.function.fd.R |only
fda-2.1.1/fda/R/dim.fd.R |only
fda-2.1.1/fda/inst/scripts/CSTR/CSTR_demo.asv |only
fda-2.1.1/fda/inst/scripts/CSTR/CSTRfn.asv |only
fda-2.1.1/fda/inst/scripts/fda-ch19.R |only
fda-2.1.1/fda/man/as.function.fd.Rd |only
fda-2.1.1/fda/man/dim.fd.Rd |only
fda-2.1.2/fda/DESCRIPTION | 51
fda-2.1.2/fda/NEWS | 10
fda-2.1.2/fda/R/AmpPhaseDecomp.R | 48
fda-2.1.2/fda/R/cca.fd.R | 9
fda-2.1.2/fda/R/eval.fd.R | 4
fda-2.1.2/fda/R/eval.monfd.R | 53
fda-2.1.2/fda/R/fRegress.fdPar.R | 576 ++++----
fda-2.1.2/fda/R/inprod.R | 32
fda-2.1.2/fda/R/landmarkreg.R | 44
fda-2.1.2/fda/R/linmod.R | 378 +++--
fda-2.1.2/fda/R/plot.fd.R | 8
fda-2.1.2/fda/R/register.fd.R | 148 +-
fda-2.1.2/fda/R/register.newfd.R | 2
fda-2.1.2/fda/data/CanadianWeather.rda |binary
fda-2.1.2/fda/data/handwrit.rda |binary
fda-2.1.2/fda/data/seabird.rda |only
fda-2.1.2/fda/inst/Matlab/additions |only
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/center.m | 8
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/deriv.m | 18
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/display.m | 12
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/getfdlabels.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/line.m | 35
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/mean.m | 24
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/plot.m | 89 -
fda-2.1.2/fda/inst/Matlab/fdaM/@fd/subsref.m | 35
fda-2.1.2/fda/inst/Matlab/fdaM/Fperm_fd.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/Fstat_fd.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/eigen_pda.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/examples/handwrit/handwrit.asv | 18
fda-2.1.2/fda/inst/Matlab/fdaM/examples/handwrit/handwrit.m | 18
fda-2.1.2/fda/inst/Matlab/fdaM/examples/lip/lip.m | 8
fda-2.1.2/fda/inst/Matlab/fdaM/examples/weather/daily.asv | 33
fda-2.1.2/fda/inst/Matlab/fdaM/examples/weather/daily.m | 27
fda-2.1.2/fda/inst/Matlab/fdaM/fRegress.m | 19
fda-2.1.2/fda/inst/Matlab/fdaM/fRegress_CV.m | 125 +
fda-2.1.2/fda/inst/Matlab/fdaM/landmarkreg.m | 103 -
fda-2.1.2/fda/inst/Matlab/fdaM/pda_overlay.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/register_newfd.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/tperm_fd.m |only
fda-2.1.2/fda/inst/Matlab/fdaM/vec2Lfd.m |only
fda-2.1.2/fda/inst/doc/fRegress-JSM2009 |only
fda-2.1.2/fda/inst/scripts/fda-script-progress.xls |binary
fda-2.1.2/fda/inst/scripts/fdarm-ch01.R | 70 -
fda-2.1.2/fda/inst/scripts/fdarm-ch02.R | 10
fda-2.1.2/fda/inst/scripts/fdarm-ch03.R | 42
fda-2.1.2/fda/inst/scripts/fdarm-ch04.R | 48
fda-2.1.2/fda/inst/scripts/fdarm-ch05.R | 212 ++-
fda-2.1.2/fda/inst/scripts/fdarm-ch06.R | 97 -
fda-2.1.2/fda/inst/scripts/fdarm-ch07.R | 187 ++
fda-2.1.2/fda/inst/scripts/fdarm-ch08.R | 396 ++++-
fda-2.1.2/fda/inst/scripts/fdarm-ch10.R | 685 ++++++++--
fda-2.1.2/fda/inst/scripts/fdarm-ch11.R | 138 +-
fda-2.1.2/fda/man/AmpPhaseDecomp.Rd | 141 +-
fda-2.1.2/fda/man/CSTR.Rd | 176 +-
fda-2.1.2/fda/man/CanadianWeather.Rd | 1
fda-2.1.2/fda/man/axisIntervals.Rd | 3
fda-2.1.2/fda/man/eval.fd.Rd | 2
fda-2.1.2/fda/man/eval.monfd.Rd | 3
fda-2.1.2/fda/man/fRegress.CV.Rd | 17
fda-2.1.2/fda/man/fRegress.Rd | 4
fda-2.1.2/fda/man/fda-internal.Rd | 2
fda-2.1.2/fda/man/handwrit.Rd | 81 -
fda-2.1.2/fda/man/lambda2df.Rd | 38
fda-2.1.2/fda/man/landmarkreg.Rd | 178 +-
fda-2.1.2/fda/man/linmod.Rd | 137 --
fda-2.1.2/fda/man/monfn.Rd |only
fda-2.1.2/fda/man/pda.fd.Rd | 2
fda-2.1.2/fda/man/plot.fd.Rd | 11
fda-2.1.2/fda/man/plot.pda.fd.rd | 11
fda-2.1.2/fda/man/register.fd.Rd | 388 ++---
fda-2.1.2/fda/man/register.newfd.rd | 28
fda-2.1.2/fda/man/seabird.Rd |only
fda-2.1.2/fda/man/smooth.monotone.Rd | 435 +++---
80 files changed, 3419 insertions(+), 2059 deletions(-)
Author: Mark Stevenson
Diff between epiR versions 0.9-16 dated 2009-05-24 and 0.9-17 dated 2009-06-02
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains
functions for directly and indirectly adjusting measures of
disease frequency, quantifying measures of association on the
basis of single or multiple strata of count data presented in a
contingency table, and computing confidence intervals around
incidence risk and incidence rate estimates. Miscellaneous
functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 8
doc/epiR.pdf | 1984 ++++++++++++++++++++++++++++----------------------------
man/epi.2by2.Rd | 8
3 files changed, 1001 insertions(+), 999 deletions(-)
Author: Michael Lawrence
Diff between RGtk2 versions 2.12.11 dated 2009-05-18 and 2.12.12 dated 2009-06-02
Title: R bindings for Gtk 2.8.0 and above
Description: Facilities in the R language for programming graphical
interfaces using Gtk, the Gimp Tool Kit.
DESCRIPTION | 6 -
R/gtkFuncs.R | 28 ------
R/gtkManuals.R | 26 +++++
R/zzz.R | 7 -
configure | 251 +++++++++++++++++++++++++++++++++++--------------------
configure.in | 4
demo/tooltips.R | 3
src/Makevars | 2
src/Makevars.in | 2
src/Rgtk.c | 70 ++++++++++++++-
src/glib.c | 6 -
src/gtkManuals.c | 14 +--
12 files changed, 280 insertions(+), 139 deletions(-)
Author: Thomas Lumley
Title: analysis of complex survey samples
Description: Summary statistics, generalised linear models, Cox models,
loglinear models, and general maximum pseudolikelihood
estimation for multistage stratified, cluster-sampled,
unequally weighted survey samples. Variances by Taylor series
linearisation or replicate weights. Post-stratification,
calibration, and raking. Two-phase designs. Graphics.
Predictive margins by direct standardization. PPS sampling
without replacement.
Diff between survey versions 3.15 dated 2009-05-18 and 3.16 dated 2009-06-02
DESCRIPTION | 9 ++-- NAMESPACE | 8 +++ R/ht.R | 36 ---------------- R/multistage.R | 31 ++++++++++---- R/pps.R |only R/survey.R | 10 +++- R/twophase.R | 2 R/twophase2.R | 4 - TODO | 4 - inst/CITATION | 4 - inst/NEWS | 7 +++ inst/doc/domain.pdf |binary inst/doc/epi.pdf |binary inst/doc/phase1.Rnw | 5 +- inst/doc/phase1.pdf |binary inst/doc/pps.Rnw |only inst/doc/pps.pdf |only inst/doc/survey.pdf |binary man/HR.Rd |only man/election.Rd | 28 ++++++++++-- man/svydesign.Rd | 33 +++++++++++---- tests/domain.Rout.save | 32 +++++++------- tests/nwts-cch.Rout.save | 42 ++++++++++++++----- tests/nwts.Rout.save | 102 +++++++++++++++++++++++++++++------------------ tests/pps.R | 1 tests/twophase.Rout.save | 32 ++++++++------ 26 files changed, 235 insertions(+), 155 deletions(-)
Author: Hana Sevcikova, A. J. Rossini
Title: Fault Tolerant Simple Network of Workstations
Description: Extension of the snow package supporting fault tolerant
and reproducible applications, as well as supporting
easy-to-use parallel programming - only one function is needed.
It is written for the PVM communication layer.
Diff between snowFT versions 0.0-4 dated 2008-12-12 and 1.0-1 dated 2009-06-02
DESCRIPTION | 16 +++++++++++----- man/snowFT-package.Rd |only 2 files changed, 11 insertions(+), 5 deletions(-)
Author: John Fox
Diff between sem versions 0.9-16 dated 2009-04-01 and 0.9-17 dated 2009-06-02
Title: Structural Equation Models
Description: This package contains functions for fitting general linear
structural equation models (with observed and unobserved
variables) by the method of maximum likelihood using the RAM
approach, and for fitting structural equations in
observed-variable models by two-stage least squares.
DESCRIPTION | 13 +-
R/path.diagram.R | 177 ++++++++++++++++++++++++++-------------
R/standardized.coefficients.R | 105 ++++++++++++++++-------
inst/CHANGES | 6 +
man/path.diagram.Rd | 7 -
man/sem.Rd | 6 +
man/standardized.coefficients.Rd | 63 ++++++++++---
7 files changed, 265 insertions(+), 112 deletions(-)
Author: Douglas Bates and Ana Ines Vazquez
Title: Pedigree-based mixed-effects models
Description: Fit pedigree-based mixed-effects models.
Diff between pedigreemm versions 0.2-1 dated 2009-05-24 and 0.2-2 dated 2009-06-02
ChangeLog | 11 +++++++++++ DESCRIPTION | 10 +++++----- R/pedigree.R | 11 +++++++---- man/relfactor.Rd | 5 ++++- 4 files changed, 27 insertions(+), 10 deletions(-)
Author: Tristen Hayfield
Diff between np versions 0.30-2 dated 2009-04-19 and 0.30-3 dated 2009-06-02
Title: Nonparametric kernel smoothing methods for mixed data types
Description: This package provides a variety of nonparametric (and
semiparametric) kernel methods that seamlessly handle a mix of
continuous, unordered, and ordered factor data types. We would
like to gratefully acknowledge support from the Natural
Sciences and Engineering Research Council of Canada
(NSERC:www.nserc.ca), the Social Sciences and Humanities
Research Council of Canada (SSHRC:www.sshrc.ca), and the Shared
Hierarchical Academic Research Computing Network
(SHARCNET:www.sharcnet.ca).
CHANGELOG | 7
DESCRIPTION | 8
R/zzz.R | 2
inst/doc/np.pdf | 1955 +++++++++++++++++------------------
inst/doc/np_faq.pdf | 2673 ++++++++++++++++++++++++------------------------
man/np.smoothcoef.Rd | 51
man/np.smoothcoef.bw.Rd | 7
src/jksum.c | 30
src/kernel.c | 71 -
svn-commit.tmp |only
10 files changed, 2406 insertions(+), 2398 deletions(-)
Author: Stefano Iacus
Diff between cem versions 1.0.106 dated 2009-05-13 and 1.0.108 dated 2009-06-02
Title: CEM: Software for Coarsened Exact Matching
Description: This program implements the coarsened exact matching
algorithm (and many extensions) described in Stefano M. Iacus,
Gary King, and Giuseppe Porro, "Matching for Causal Inference
Without Balance Checking,"
http://gking.harvard.edu/files/abs/cem-abs.shtml
DESCRIPTION | 8
R/att.R | 2
R/relax.plot.R | 132 +-
inst/doc/JSS-paper.tex | 1547 ------------------------
inst/doc/Rplots.pdf | 1495 +++++++++--------------
inst/doc/cem.Rnw | 2
inst/doc/cem.bib |only
inst/doc/cem.pdf | 3064 ++++++++++++++++++++++---------------------------
inst/doc/coarsen1.pdf | 655 +++++-----
inst/doc/coarsen2.pdf | 317 ++---
inst/doc/index.shtml | 4
inst/doc/teff.pdf | 558 ++------
12 files changed, 2769 insertions(+), 5015 deletions(-)
Author: Markus Helbig
Diff between JGR versions 1.6-3 dated 2009-02-07 and 1.6-4 dated 2009-06-02
Title: JGR - Java Gui for R
Description: Java GUI for R - cross-platform, universal and unified
Graphical User Interface for R. For full functionality on
Windows and Mac OS X JGR requires a start application which
depends on your OS. This can be downloaded from JGR's website:
http://www.rosuda.org/JGR
JGR-1.6-3/JGR/._NEWS |only
JGR-1.6-3/JGR/man/jgr.addMenu.rd |only
JGR-1.6-3/JGR/man/jgr.addMenuItem.rd |only
JGR-1.6-3/JGR/man/jgr.addMenuSeperator.rd |only
JGR-1.6-4/JGR/DESCRIPTION | 18 +-
JGR-1.6-4/JGR/NEWS | 253 +++++++++++++++---------------
JGR-1.6-4/JGR/R/JGR.R | 71 ++++----
JGR-1.6-4/JGR/inst/java/JGR.jar |binary
JGR-1.6-4/JGR/man/jgr.addMenu.Rd |only
JGR-1.6-4/JGR/man/jgr.addMenuItem.Rd |only
JGR-1.6-4/JGR/man/jgr.addMenuSeperator.Rd |only
11 files changed, 184 insertions(+), 158 deletions(-)