Author: Peter K Dunn
Diff between tweedie versions 1.6.6 dated 2009-06-19 and 1.6.7 dated 2009-06-30
More information about tweedie at CRAN
Title: Tweedie exponential family models
Description: Maximum likelihood computations for Tweedie families.
CHANGE.log | 4 ++++
DESCRIPTION | 8 ++++----
R/tweedie.R | 2 +-
man/tweedie-package.Rd | 6 +++---
src/tweedie.f | 14 +++++++-------
5 files changed, 19 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Author: REvolution Computing
Title: Iterator construct for R
Description: Support for iterators, which allow a programmer to
traverse through all the elements of a vector, list, or other
collection of data.
Diff between iterators versions 1.0.0 dated 2009-06-27 and 1.0.1 dated 2009-06-30
DESCRIPTION | 8 ++++---- inst/doc/iterators.pdf |binary 2 files changed, 4 insertions(+), 4 deletions(-)
More information about iterators at CRAN
Path: /cran/updated | permanent link
Author: REvolution Computing
Title: Foreach looping construct for R
Description: Support for the foreach looping construct. Foreach is an
idiom that allows for iterating over elements in a collection,
without the use of an explicit loop counter. This package in
particular is intended to be used for its return value, rather
than for its side effects. In that sense, it is similar to the
standard lapply function, but doesn't require the evaluation of
a function. Using foreach without side effects also
facilitates executing the loop in parallel.
Diff between foreach versions 1.2.0-1 dated 2009-06-27 and 1.2.1 dated 2009-06-30
DESCRIPTION | 8 inst/doc/foreach.pdf | 1539 +++++++++++++++++++++++++-------------------------- man/foreach.Rd | 9 3 files changed, 791 insertions(+), 765 deletions(-)
More information about foreach at CRAN
Path: /cran/updated | permanent link
Author: REvolution Computing
Title: Foreach parallel adaptor for the multicore package
Description: Provides a parallel backend for the %dopar% function using
Simon Urbanek's multicore package.
Diff between doMC versions 1.1.0 dated 2009-06-27 and 1.1.1 dated 2009-06-30
DESCRIPTION | 9 +++++---- R/doMC.R | 27 ++++++++++++++++++++++----- man/registerDoMC.Rd | 20 ++++++++++++++++---- 3 files changed, 43 insertions(+), 13 deletions(-)
More information about doMC at CRAN
Path: /cran/updated | permanent link
Author: Ingmar Visser
Diff between depmixS4 versions 0.2-1 dated 2009-02-23 and 0.2-2 dated 2009-06-30
More information about depmixS4 at CRAN
Title: Dependent Mixture Models
Description: Fit latent (hidden) Markov models on mixed categorical and
continuous (timeseries) data, otherwise known as dependent
mixture models
depmixS4-0.2-1/depmixS4/NEWS |only
depmixS4-0.2-2/depmixS4/DESCRIPTION | 33 ++++++++-----
depmixS4-0.2-2/depmixS4/R/EM.R | 57 ++++++++++++------------
depmixS4-0.2-2/depmixS4/R/depmixfit.R | 2
depmixS4-0.2-2/depmixS4/R/response-class.R | 2
depmixS4-0.2-2/depmixS4/R/responseGLMMULTINOM.R | 2
depmixS4-0.2-2/depmixS4/man/depmixS4-package.Rd | 4 -
depmixS4-0.2-2/depmixS4/man/mix.sim-class.Rd | 10 +---
8 files changed, 57 insertions(+), 53 deletions(-)
Path: /cran/updated | permanent link
Author: Eric Aldrich
Diff between wavelets versions 0.2-4 dated 2009-04-22 and 0.2-5 dated 2009-06-29
More information about wavelets at CRAN
Title: A package of funtions for computing wavelet filters, wavelet
transforms and multiresolution analyses
Description: This package contains functions for computing and plotting
discrete wavelet transforms (DWT) and maximal overlap discrete
wavelet transforms (MODWT), as well as their inverses.
Additionally, it contains functionality for computing and
plotting wavelet transform filters that are used in the above
decompositions as well as multiresolution analyses.
DESCRIPTION | 8 ++++----
R/modwt.R | 2 +-
2 files changed, 5 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
Author: Tim Coelli, Arne Henningsen
Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier
Production and Cost Functions. Two specifications are
available: the error components specification with time-varying
efficiencies (Battese and Coelli, 1992) and a model
specification in which the firm effects are directly influenced
by a number of variables (Battese and Coelli, 1995).
Diff between frontier versions 0.991-0 dated 2009-06-18 and 0.991-2 dated 2009-06-29
DESCRIPTION | 8 NEWS | 11 R/frontier.R | 2 man/frontier.Rd | 16 src/dis.c | 2 src/front41.f | 47 tests/frontierTest.R | 176 tests/frontierTest.Rout.save |11985 +++++++++++++++++++++++++++++++++++++++---- tests/nestedModels.R | 2 tests/nestedModels.Rout.save | 38 10 files changed, 11236 insertions(+), 1051 deletions(-)
More information about frontier at CRAN
Path: /cran/updated | permanent link
Author: Sanford Weisberg
Diff between dr versions 3.0.3 dated 2008-12-11 and 3.0.4 dated 2009-06-29
More information about dr at CRAN
Title: Methods for dimension reduction for regression
Description: Functions, methods, and datasets for fitting dimension
reduction regression, using slicing (methods SAVE and SIR),
Principal Hessian Directions (phd, using residuals and the
response), and an iterative IRE. Partial methods, that
condition on categorical predictors are also available. A
variety of tests, and stepwise deletion of predictors, is also
included. Also included is code for computing permutation
tests of dimension. Adding additional methods of estimating
dimension is straightforward. For documentation, see the
vignette in the package. With version 3.0.4, the arguments for
dr.step have been modified.
dr-3.0.3/dr/Rnew |only
dr-3.0.3/dr/inst/doc/.build.timestamp |only
dr-3.0.3/dr/inst/doc/overview.synctex |only
dr-3.0.4/dr/DESCRIPTION | 43 -
dr-3.0.4/dr/NAMESPACE | 2
dr-3.0.4/dr/R/dr.R | 159 ++--
dr-3.0.4/dr/Rv3.0.2 |only
dr-3.0.4/dr/Rwork |only
dr-3.0.4/dr/data/banknote.txt | 402 +++++------
dr-3.0.4/dr/data/mussels.txt | 166 ++--
dr-3.0.4/dr/inst/doc/overview.Rnw | 33
dr-3.0.4/dr/inst/doc/overview.pdf | 1201 ++++++++++++++++------------------
dr-3.0.4/dr/man/dr.directions.Rd | 5
dr-3.0.4/dr/man/drop1.dr.Rd | 12
14 files changed, 1027 insertions(+), 996 deletions(-)
Path: /cran/updated | permanent link
More information about aroma.affymetrix at CRAN
Path: /cran/new | permanent link
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Title: RSiteSearch
Description: Alternative interfaces to RSiteSearch
Diff between RSiteSearch versions 1.0-3 dated 2009-05-15 and 1.0-4 dated 2009-06-29
RSiteSearch-1.0-3/RSiteSearch/NAMESPACE |only RSiteSearch-1.0-3/RSiteSearch/inst/brew/results.brew.html |only RSiteSearch-1.0-4/RSiteSearch/DESCRIPTION | 10 +- RSiteSearch-1.0-4/RSiteSearch/NEWS | 6 + RSiteSearch-1.0-4/RSiteSearch/R/HTML.RSiteSearch.R | 2 RSiteSearch-1.0-4/RSiteSearch/R/PackageSum2.R | 20 ++++ RSiteSearch-1.0-4/RSiteSearch/inst/brew/default |only RSiteSearch-1.0-4/RSiteSearch/inst/brew/iframe |only RSiteSearch-1.0-4/RSiteSearch/man/HTML.Rd | 4 RSiteSearch-1.0-4/RSiteSearch/man/PackageSum2.Rd | 66 ++++++++++++-- RSiteSearch-1.0-4/RSiteSearch/man/PackageSummary.Rd | 10 +- RSiteSearch-1.0-4/RSiteSearch/man/RSiteSearch.function.Rd | 3 RSiteSearch-1.0-4/RSiteSearch/man/hits.Rd | 1 RSiteSearch-1.0-4/RSiteSearch/man/sortRSiteSearch.Rd | 1 RSiteSearch-1.0-4/RSiteSearch/man/summary.RSiteSearch.Rd | 4 RSiteSearch-1.0-4/RSiteSearch/man/unionRSiteSearch.Rd | 3 16 files changed, 111 insertions(+), 19 deletions(-)
More information about RSiteSearch at CRAN
Path: /cran/updated | permanent link
Author: Lester Yuan, Tom Stockton, Doug Bronson, Pasha Minallah, and
Mark Fitzgerald
Title: Provides a GUI to several statistical methods useful for causal
assessment.
Description: Using JGR, provides a GUI to several statistical methods -
scatterplot, boxplot, linear regression, generalized linear
regression, quantile, regression, conditional probability
calculations, and regression trees.
Diff between CADStat versions 2.1-17 dated 2009-01-13 and 2.1-21 dated 2009-06-29
CADStat-2.1-17/CADStat/R/bioinfer.JGR.R |only CADStat-2.1-17/CADStat/R/bioinfer1.JGR.r |only CADStat-2.1-17/CADStat/R/bioinfer2.JGR.r |only CADStat-2.1-17/CADStat/R/bioinfer3.JGR.r |only CADStat-2.1-17/CADStat/R/dup.sel.r |only CADStat-2.1-17/CADStat/R/get.duplicates.r |only CADStat-2.1-17/CADStat/R/get.mergedfile.r |only CADStat-2.1-17/CADStat/R/get.mismatch.r |only CADStat-2.1-17/CADStat/R/get.otu.jgr.r |only CADStat-2.1-17/CADStat/man/bioinfer.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer1.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer2.JGR.Rd |only CADStat-2.1-17/CADStat/man/bioinfer3.JGR.Rd |only CADStat-2.1-17/CADStat/man/dup.sel.Rd |only CADStat-2.1-17/CADStat/man/get.duplicates.Rd |only CADStat-2.1-17/CADStat/man/get.mergedfile.Rd |only CADStat-2.1-17/CADStat/man/get.mismatch.Rd |only CADStat-2.1-17/CADStat/man/get.otu.jgr.Rd |only CADStat-2.1-21/CADStat/DESCRIPTION | 33 ++++++++++++++----------- CADStat-2.1-21/CADStat/R/bioinfer.new.JGR.R |only CADStat-2.1-21/CADStat/R/buildresultsXML.R | 8 +++--- CADStat-2.1-21/CADStat/R/cor.JGR.R | 2 - CADStat-2.1-21/CADStat/R/gisdt.subset.R | 6 +++- CADStat-2.1-21/CADStat/R/zzz.R | 10 ++----- CADStat-2.1-21/CADStat/chm |only CADStat-2.1-21/CADStat/inst/.svn |only CADStat-2.1-21/CADStat/inst/doc/.svn |only CADStat-2.1-21/CADStat/inst/java/cadstat.jar |binary CADStat-2.1-21/CADStat/man/bioinfer.new.JGR.Rd |only 29 files changed, 32 insertions(+), 27 deletions(-)
More information about CADStat at CRAN
Path: /cran/updated | permanent link
Author: Holger Schabenberger
Title: Spatial count regression
Description: Fit spatial CAR count regression models using MCMC
Diff between spatcounts versions 1.0 dated 2009-06-08 and 1.1 dated 2009-06-29
DESCRIPTION | 8 ++++---- R/Clarketest.R | 3 +-- R/LogLike.R | 23 ++++++++++++++++++----- R/Vuongtest.R | 2 -- man/Clarketest.Rd | 4 ++-- man/DIC.Rd | 2 +- man/LogLike.Rd | 2 +- man/Vuongtest.Rd | 4 ++-- man/est.sc.Rd | 15 +++++++++------ man/spatcounts-package.Rd | 2 +- 10 files changed, 39 insertions(+), 26 deletions(-)
More information about spatcounts at CRAN
Path: /cran/updated | permanent link
More information about tolerance at CRAN
Path: /cran/new | permanent link
Author: Karline Soetaert
Diff between rootSolve versions 1.3 dated 2009-02-20 and 1.4 dated 2009-06-29
More information about rootSolve at CRAN
Title: Nonlinear root finding, equilibrium and steady-state analysis of
ordinary differential equations
Description: Routines to find the root of nonlinear functions, and to
perform steady-state and equilibrium analysis of ordinary
differential equations (ODE). Includes routines that: (1)
generate gradient and Jacobian matrices (full and banded), (2)
find roots of non-linear equations by the Newton-Raphson
method, (3) estimate steady-state conditions of a system of
(differential) equations in full, banded or sparse form, using
the Newton-Raphson method, or by dynamically running, (4) solve
the steady-state conditions for uni-and multicomponent 1-D,
2-D, and 3-D partial differential equations, that have been
converted to ODEs by numerical differencing (using the
method-of-lines approach). Includes fortran code.
rootSolve-1.3/rootSolve/R/Roots.r |only
rootSolve-1.3/rootSolve/R/runsteady.r |only
rootSolve-1.3/rootSolve/R/stode.r |only
rootSolve-1.3/rootSolve/R/stodes.r |only
rootSolve-1.3/rootSolve/demo/Jacobandroots.r |only
rootSolve-1.3/rootSolve/inst/doc/rootSolve.rnw |only
rootSolve-1.3/rootSolve/inst/dynload/anoxmod.r |only
rootSolve-1.4/rootSolve/DESCRIPTION | 42
rootSolve-1.4/rootSolve/NAMESPACE | 4
rootSolve-1.4/rootSolve/R/gradient.R |only
rootSolve-1.4/rootSolve/R/hessian.R |only
rootSolve-1.4/rootSolve/R/internal.R |only
rootSolve-1.4/rootSolve/R/jacobian.band.R |only
rootSolve-1.4/rootSolve/R/jacobian.full.R |only
rootSolve-1.4/rootSolve/R/multiroot.R |only
rootSolve-1.4/rootSolve/R/runsteady.R |only
rootSolve-1.4/rootSolve/R/steady.1D.R |only
rootSolve-1.4/rootSolve/R/steady.2D.R |only
rootSolve-1.4/rootSolve/R/steady.3D.R |only
rootSolve-1.4/rootSolve/R/steady.R |only
rootSolve-1.4/rootSolve/R/steady.band.R |only
rootSolve-1.4/rootSolve/R/stode.R |only
rootSolve-1.4/rootSolve/R/stodes.R |only
rootSolve-1.4/rootSolve/R/uniroot.all.R |only
rootSolve-1.4/rootSolve/demo/Jacobandroots.R |only
rootSolve-1.4/rootSolve/demo/Steadystate.R | 1
rootSolve-1.4/rootSolve/inst/CITATION |only
rootSolve-1.4/rootSolve/inst/doc/rootSolve.Rnw |only
rootSolve-1.4/rootSolve/inst/doc/rootSolve.pdf |49044 +++++++++++++------------
rootSolve-1.4/rootSolve/inst/doc/vignettes.bib | 349
rootSolve-1.4/rootSolve/inst/dynload/anoxmod.R |only
rootSolve-1.4/rootSolve/man/gradient.Rd | 70
rootSolve-1.4/rootSolve/man/hessian.Rd | 59
rootSolve-1.4/rootSolve/man/jacobian.band.Rd | 138
rootSolve-1.4/rootSolve/man/jacobian.full.Rd | 106
rootSolve-1.4/rootSolve/man/multiroot.1D.Rd |only
rootSolve-1.4/rootSolve/man/multiroot.Rd | 159
rootSolve-1.4/rootSolve/man/rootSolve.Rd | 64
rootSolve-1.4/rootSolve/man/runsteady.Rd | 425
rootSolve-1.4/rootSolve/man/steady.1D.Rd | 194
rootSolve-1.4/rootSolve/man/steady.2D.Rd | 206
rootSolve-1.4/rootSolve/man/steady.3D.Rd |only
rootSolve-1.4/rootSolve/man/steady.Rd | 111
rootSolve-1.4/rootSolve/man/steady.band.Rd | 127
rootSolve-1.4/rootSolve/man/stode.Rd | 432
rootSolve-1.4/rootSolve/man/stodes.Rd | 283
rootSolve-1.4/rootSolve/man/uniroot.all.Rd | 86
rootSolve-1.4/rootSolve/src/call_runsteady.c | 4
rootSolve-1.4/rootSolve/src/call_steady.c | 2
rootSolve-1.4/rootSolve/src/call_stsparse.c | 21
rootSolve-1.4/rootSolve/src/sparse.f | 411
rootSolve-1.4/rootSolve/src/sparsecoeff.f | 230
rootSolve-1.4/rootSolve/src/steady.f | 10
53 files changed, 28888 insertions(+), 23690 deletions(-)
Path: /cran/updated | permanent link
More information about rankhazard at CRAN
Path: /cran/new | permanent link
Author: Christian B. Pipper
Diff between multmod versions 0.3 dated 2009-06-25 and 0.4 dated 2009-06-29
More information about multmod at CRAN
Title: Testing of multiple outcomes
Description: Testing of multiple outcomes using i.i.d. decompositions
DESCRIPTION | 6 +++---
NEWS | 3 ++-
R/amtest.R | 2 +-
man/amtest.Rd | 10 ++++++----
man/mn6.9.Rd | 2 +-
5 files changed, 13 insertions(+), 10 deletions(-)
Path: /cran/updated | permanent link
Author: Martin Schlather
Diff between RandomFields versions 1.3.37 dated 2009-01-26 and 1.3.39 dated 2009-06-29
More information about RandomFields at CRAN
Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields;
conditional simulation; kriging
DESCRIPTION | 14 ++++++-----
src/MPP.cc | 2 -
src/RFsimu.cc | 6 ++--
src/RFsimu.h | 6 ++--
src/RandomFields.h | 4 +++
src/Xempvario.cc | 4 +--
src/auxiliary.cc | 66 +++++++++++++++++++++++++++++++++++++++++++++++++++++
7 files changed, 87 insertions(+), 15 deletions(-)
Path: /cran/updated | permanent link
Author: Juha Karvanen
Title: Independent component analysis using score functions from the
Pearson system
Description: The Pearson-ICA algorithm is a mutual information-based
method for blind separation of statistically independent source
signals. It has been shown that the minimization of mutual
information leads to iterative use of score functions, i.e.
derivatives of log densities. The Pearson system allows
adaptive modeling of score functions. The flexibility of the
Pearson system makes it possible to model a wide range of
source distributions including asymmetric distributions. The
algorithm is designed especially for problems with asymmetric
sources but it works for symmetric sources as well.
Diff between PearsonICA versions 1.2-3 dated 2008-10-10 and 1.2-4 dated 2009-06-29
DESCRIPTION | 36 ++++++++++++++++++++++-------------- 1 file changed, 22 insertions(+), 14 deletions(-)
More information about PearsonICA at CRAN
Path: /cran/updated | permanent link
Author: Martin Schlather
Diff between MarkedPointProcess versions 0.2.9 dated 2008-08-22 and 0.2.11 dated 2009-06-29
More information about MarkedPointProcess at CRAN
Title: Analysis of Marks of Marked Point Processes
Description: Non-parametric Analysis of the Marks of Marked Point
Processes
DESCRIPTION | 9 ++++++---
src/MPPanalyse.cc | 2 +-
src/MPPbasics.cc | 23 ++++++++++++++++++++---
3 files changed, 27 insertions(+), 7 deletions(-)
Path: /cran/updated | permanent link
Author: Juha Karvanen
Title: L-moments and quantile mixtures
Description: The Lmoments package contains functions to estimate
L-moments and trimmed L-moments from the data. The package also
contains functions to estimate the parameters of the normal
polynomial quantile mixture and the Cauchy polynomial quantile
mixture from L-moments and trimmed L-moments.
Diff between Lmoments versions 1.1-2 dated 2007-02-11 and 1.1-3 dated 2009-06-29
DESCRIPTION | 31 +++++++++++++++++-------------- inst/CITATION | 8 ++++---- inst/News | 5 ++++- man/Lmoments.Rd | 25 +++++++++++++++---------- man/cauchypoly.Rd | 6 +++--- man/covnormpoly4.Rd | 6 +++--- man/data2cauchypoly.Rd | 6 +++--- man/data2normpoly.Rd | 6 +++--- man/normpoly.Rd | 6 +++--- man/t1lmoments.Rd | 6 +++--- 10 files changed, 58 insertions(+), 47 deletions(-)
More information about Lmoments at CRAN
Path: /cran/updated | permanent link
Author: Philippe Grosjean
Diff between tcltk2 versions 1.0-8 dated 2009-04-24 and 1.0-9 dated 2009-06-28
More information about tcltk2 at CRAN
Title: Tcl/Tk Additions
Description: A series of additional Tk widgets with style and various
functions (under Windows: DDE exchange, access to the registry
and icon manipulation) to supplement the tcltk package.
tcltk2-1.0-8/tcltk2/BinaryFiles |only
tcltk2-1.0-8/tcltk2/R/winSystemFonts.R |only
tcltk2-1.0-8/tcltk2/cleanup |only
tcltk2-1.0-8/tcltk2/inst/doc |only
tcltk2-1.0-8/tcltk2/man/unix/winSystemFonts.Rd |only
tcltk2-1.0-8/tcltk2/man/windows/winSystemFonts.Rd |only
tcltk2-1.0-8/tcltk2/win/bin |only
tcltk2-1.0-8/tcltk2/win/src/winSystemFonts.c |only
tcltk2-1.0-8/tcltk2/win/tklibs/Tktable2.9 |only
tcltk2-1.0-8/tcltk2/win/tklibs/tile0.7.2 |only
tcltk2-1.0-8/tcltk2/win/tklibs/winico0.6/Winico06.dll |only
tcltk2-1.0-9/tcltk2/DESCRIPTION | 8
tcltk2-1.0-9/tcltk2/LICENSE | 1873 +++++++++---------
tcltk2-1.0-9/tcltk2/NAMESPACE | 177 -
tcltk2-1.0-9/tcltk2/NEWS | 49
tcltk2-1.0-9/tcltk2/R/tk2commands.R | 28
tcltk2-1.0-9/tcltk2/R/tk2fonts.R | 21
tcltk2-1.0-9/tcltk2/R/zzz.R | 42
tcltk2-1.0-9/tcltk2/TODO | 109 -
tcltk2-1.0-9/tcltk2/cleanup.win |only
tcltk2-1.0-9/tcltk2/configure.win | 11
tcltk2-1.0-9/tcltk2/inst/CITATION | 6
tcltk2-1.0-9/tcltk2/inst/tklibs/bwidget1.7/ChangeLog | 136 -
tcltk2-1.0-9/tcltk2/inst/tklibs/fonts.tcl | 127 -
tcltk2-1.0-9/tcltk2/man/tcltk2-package.Rd | 12
tcltk2-1.0-9/tcltk2/man/tk2fonts.Rd | 8
tcltk2-1.0-9/tcltk2/man/windows/tk2dde.Rd | 7
tcltk2-1.0-9/tcltk2/win/src/Makevars |only
tcltk2-1.0-9/tcltk2/win/src/Winico06.c |only
29 files changed, 1338 insertions(+), 1276 deletions(-)
Path: /cran/updated | permanent link
More information about svSweave at CRAN
Path: /cran/new | permanent link
More information about svUnit at CRAN
Path: /cran/new | permanent link
More information about svWidgets at CRAN
Path: /cran/new | permanent link
Author: Philippe Grosjean, Romain Francois & Kamil Barton
Title: SciViews GUI API - Miscellaneous functions
Description: Supporting functions for the GUI API (various utilitary
functions)
Diff between svMisc versions 0.9-46 dated 2009-01-23 and 0.9-48 dated 2009-06-28
DESCRIPTION | 29 +- NEWS | 10 R/Args.R | 3 R/CallTip.R | 3 R/Complete.R | 3 R/CompletePlus.R | 120 ++++------ R/Parse.R | 17 + R/Sys.tempdir.R | 3 R/Sys.userdir.R | 3 R/TempEnv.R | 3 R/addItems.R | 26 +- R/addTemp.R | 5 R/assignTemp.R | 2 R/captureAll.R | 36 +-- R/changeTemp.R | 3 R/clipsource.R | 7 R/compareRVersion.R | 3 R/def.R | 13 - R/descFun.R | 63 ++--- R/existsTemp.R | 2 R/getEnvironment.R | 3 R/getTemp.R | 5 R/guiCmd.R | 17 - R/helpSearchWeb.R | 4 R/isAqua.R | 3 R/isHelp.R | 5 R/isMac.R | 3 R/isRgui.R | 3 R/isSDI.R | 5 R/isWin.R | 3 R/listMethods.R | 19 - R/listTypes.R | 10 R/objBrowse.R | 9 R/objClear.R | 6 R/objDir.R | 3 R/objInfo.R | 11 R/objList.R | 585 ++++++++++++++++++++++++++-------------------------- R/objMenu.R | 43 +-- R/objSearch.R | 10 R/progress.R | 15 - R/r.R | 8 R/rmTemp.R | 3 R/svMisc-internal.R | 78 ++++-- R/tempvar.R | 4 man/captureAll.Rd | 4 man/objBrowse.Rd | 21 + 46 files changed, 653 insertions(+), 581 deletions(-)
More information about svMisc at CRAN
Path: /cran/updated | permanent link
Author: Heloise Lavigne and Aurelien Proye and Jean-Pierre Gattuso.
Portions of code and/or corrections were contributed by
Jean-Marie Epitalon, Andreas Hofmann, Bernard Gentili, Jim Orr
and Karline Soetaert
Title: Calculates parameters of the seawater carbonate system
Description: Calculates parameters of the seawater carbonate system
Diff between seacarb versions 2.1.2 dated 2009-05-25 and 2.1.3 dated 2009-06-28
seacarb-2.1.2/seacarb/R/pHinsi.R |only seacarb-2.1.2/seacarb/data/seacarb_test.txt |only seacarb-2.1.3/seacarb/ChangeLog | 14 ++++++++++++++ seacarb-2.1.3/seacarb/DESCRIPTION | 10 ++++------ seacarb-2.1.3/seacarb/R/carb.R | 10 +++++----- seacarb-2.1.3/seacarb/R/pHinsi.r |only seacarb-2.1.3/seacarb/README |only seacarb-2.1.3/seacarb/data/seacarb_test_P0.txt |only seacarb-2.1.3/seacarb/data/seacarb_test_P300.txt |only seacarb-2.1.3/seacarb/man/carb.Rd | 17 +++++++++-------- seacarb-2.1.3/seacarb/man/pCa.Rd | 3 +++ seacarb-2.1.3/seacarb/man/pTA.Rd | 3 +-- seacarb-2.1.3/seacarb/man/pgas.Rd | 3 +-- seacarb-2.1.3/seacarb/man/pmix.Rd | 3 +-- seacarb-2.1.3/seacarb/man/ppH.Rd | 3 +-- seacarb-2.1.3/seacarb/man/seacarb_test_P0.Rd |only seacarb-2.1.3/seacarb/man/seacarb_test_P300.Rd |only 17 files changed, 39 insertions(+), 27 deletions(-)
More information about seacarb at CRAN
Path: /cran/updated | permanent link
More information about svDialogs at CRAN
Path: /cran/new | permanent link
Author: Richard Bourgon
Diff between intervals versions 0.12.1 dated 2009-06-14 and 0.12.2 dated 2009-06-28
More information about intervals at CRAN
Title: Tools for working with points and intervals
Description: Tools for working with and comparing sets of points and
intervals.
DESCRIPTION | 10 +++++-----
NAMESPACE | 7 ++++++-
man/Intervals_virtual_or_numeric-class.Rd |only
3 files changed, 11 insertions(+), 6 deletions(-)
Path: /cran/updated | permanent link
Author: Patrick E. Meyer
Title: Information-Theoretic Measures
Description: This package implements various measures of information
theory based on several implemented entropy estimators.
Diff between infotheo versions 1.0.1 dated 2009-06-26 and 1.0.2 dated 2009-06-28
CHANGES | 3 ++- DESCRIPTION | 6 +++--- src/entropy.cpp | 4 ++-- 3 files changed, 7 insertions(+), 6 deletions(-)
More information about infotheo at CRAN
Path: /cran/updated | permanent link
Author: Søren Højsgaard
Diff between gRbase versions 1.1.0 dated 2009-04-26 and 1.1.2 dated 2009-06-28
More information about gRbase at CRAN
Title: A package for graphical modelling in R
Description: The gRbase package provides certain general constructs
which are used by other graphical modelling packages. This
includes 1) the concept of gmData (graphical meta data), 2)
several graph algorithms 3) facilities for table operations, 4)
functions for testing for conditional independence. gRbase also
illustrates how hierarchical log-linear models (hllm) may be
implemented.
gRbase-1.1.0/gRbase/src/triangmcwh.c |only
gRbase-1.1.2/gRbase/ChangeLog | 11 ++
gRbase-1.1.2/gRbase/DESCRIPTION | 6 -
gRbase-1.1.2/gRbase/R/GraphAlgo-mcs.R | 2
gRbase-1.1.2/gRbase/R/GraphAlgo-rip.R | 130 +++++++++++++++-----------------
gRbase-1.1.2/gRbase/inst/doc/gRbase.pdf |binary
gRbase-1.1.2/gRbase/src/triangmcwh2.c |only
7 files changed, 74 insertions(+), 75 deletions(-)
Path: /cran/updated | permanent link
Author: Reinhard Harter, Kurt Hornik and Stefan Theussl
Title: Symphony in R
Description: An R interface to the SYMPHONY MILP solver (version
5.1.10).
Diff between Rsymphony versions 0.1-8 dated 2009-03-19 and 0.1-9 dated 2009-06-28
DESCRIPTION | 9 src/R_symphony.cc | 3 src/SYMPHONY/BuildTools/coin.m4 | 105 + src/SYMPHONY/BuildTools/commit_new_release | 51 src/SYMPHONY/BuildTools/prepare_new_release | 648 ++++++-- src/SYMPHONY/Cgl/MSVisualStudio/v8/libCgl/libCgl.vcproj | 1 src/SYMPHONY/Cgl/configure | 20 src/SYMPHONY/Cgl/configure.ac | 4 src/SYMPHONY/Cgl/src/CglPreProcess/CglPreProcess.cpp | 39 src/SYMPHONY/Cgl/src/CglProbing/CglProbing.cpp | 21 src/SYMPHONY/Clp/MSVisualStudio/v8/clp/clp.vcproj | 1 src/SYMPHONY/Clp/MSVisualStudio/v8/libClp/libClp.vcproj | 1 src/SYMPHONY/Clp/MSVisualStudio/v9 |only src/SYMPHONY/Clp/configure | 20 src/SYMPHONY/Clp/configure.ac | 4 src/SYMPHONY/Clp/src/ClpPackedMatrix.cpp | 2 src/SYMPHONY/Clp/src/ClpPresolve.cpp | 30 src/SYMPHONY/Clp/src/ClpSimplex.cpp | 12 src/SYMPHONY/Clp/src/ClpSimplexDual.cpp | 164 +- src/SYMPHONY/Clp/src/ClpSimplexPrimal.cpp | 5 src/SYMPHONY/CoinUtils/AUTHORS | 5 src/SYMPHONY/CoinUtils/MSVisualStudio/v8/libCoinUtils/libCoinUtils.vcproj | 1 src/SYMPHONY/CoinUtils/MSVisualStudio/v9 |only src/SYMPHONY/CoinUtils/configure | 20 src/SYMPHONY/CoinUtils/configure.ac | 4 src/SYMPHONY/CoinUtils/src/CoinHelperFunctions.hpp | 2 src/SYMPHONY/CoinUtils/src/CoinLpIO.cpp | 6 src/SYMPHONY/CoinUtils/src/CoinPackedMatrix.cpp | 2 src/SYMPHONY/CoinUtils/src/CoinPresolveDoubleton.cpp | 2 src/SYMPHONY/CoinUtils/src/CoinPresolveDual.cpp | 3 src/SYMPHONY/CoinUtils/src/CoinPresolveTripleton.cpp | 3 src/SYMPHONY/Data/Sample/configure | 20 src/SYMPHONY/Data/Sample/configure.ac | 4 src/SYMPHONY/Externals | 20 src/SYMPHONY/FlopC++/configure | 137 + src/SYMPHONY/FlopC++/configure.ac | 2 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsi/libOsi.vcproj | 1 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiCbc/libOsiCbc.vcproj | 1 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiClp/libOsiClp.vcproj | 1 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiSym/libOsiSym.vcproj | 4 src/SYMPHONY/Osi/MSVisualStudio/v8/libOsiVol/libOsiVol.vcproj | 1 src/SYMPHONY/Osi/src/OsiClp/OsiClpSolverInterface.cpp | 6 src/SYMPHONY/Osi/src/OsiCuts.hpp | 9 src/SYMPHONY/Osi/src/OsiPresolve.cpp | 4 src/SYMPHONY/SYMPHONY/MSVisualStudio/sym.mak | 764 ++++------ src/SYMPHONY/SYMPHONY/configure | 20 src/SYMPHONY/SYMPHONY/configure.ac | 2 src/SYMPHONY/ThirdParty/Blas/configure | 20 src/SYMPHONY/ThirdParty/Blas/configure.ac | 4 src/SYMPHONY/ThirdParty/Glpk/INSTALL.Glpk | 8 src/SYMPHONY/ThirdParty/Glpk/Makefile.am | 10 src/SYMPHONY/ThirdParty/Glpk/Makefile.in | 80 - src/SYMPHONY/ThirdParty/Glpk/configure | 9 src/SYMPHONY/ThirdParty/Glpk/configure.ac | 9 src/SYMPHONY/ThirdParty/Glpk/get.Glpk | 2 src/SYMPHONY/ThirdParty/Glpk/glpk.patch | 8 src/SYMPHONY/ThirdParty/Lapack/Makefile.am | 2 src/SYMPHONY/ThirdParty/Lapack/configure | 117 - src/SYMPHONY/ThirdParty/Lapack/configure.ac | 39 src/SYMPHONY/configure | 20 src/SYMPHONY/configure.ac | 4 61 files changed, 1612 insertions(+), 904 deletions(-)
More information about Rsymphony at CRAN
Path: /cran/updated | permanent link
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.93 dated 2009-05-25 and 0.94 dated 2009-06-28
DESCRIPTION | 8 - R/DanielPlot.R | 2 R/FrF2.R | 30 +++- R/MEPlot.R | 14 +- R/blockpick.R | 12 + R/leftadjust.R | 12 + R/pb.R | 3 R/remodel.R | 28 ++-- R/splitpick.R | 10 + R/utilcat.R | 75 +++++++++-- inst/NEWS | 23 +++ man/FrF2.Rd | 304 +++++++++++------------------------------------ man/IAPlot.Rd | 23 ++- man/block.Rd |only man/estimable.2fis.Rd |only man/pb.Rd | 22 +++ man/splitplot.Rd |only tests/FrF2test.R | 4 tests/FrF2test.Rout.save | 66 ++++++++-- 19 files changed, 328 insertions(+), 308 deletions(-)
More information about FrF2 at CRAN
Path: /cran/updated | permanent link
More information about ElectroGraph at CRAN
Path: /cran/new | permanent link
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.2 dated 2009-05-27 and 0.3 dated 2009-06-28
DESCRIPTION | 12 +++--- R/fac.design.R | 3 + R/oa.design.R | 3 + inst/NEWS | 7 +++ man/DoE.base-package.Rd | 1 man/class-design.Rd | 46 +++++++++++++++---------- man/export.design.Rd | 11 ++---- man/oa.design.Rd | 85 +++++++++++++++++++++++++++++++++++++----------- 8 files changed, 117 insertions(+), 51 deletions(-)
More information about DoE.base at CRAN
Path: /cran/updated | permanent link
Author: Thomas Petzoldt
Title: Simulation of ecological (and other) dynamic systems
Description: simecol is an object oriented framework to simulate
ecological (and other) dynamic systems. It can be used for
differential equations, individual-based (or agent-based) and
other models as well. The package helps to organize scenarios
(avoids copy and paste) and improves readability and usability
of code.
Diff between simecol versions 0.6-6 dated 2009-02-26 and 0.6-8 dated 2009-06-27
simecol-0.6-6/simecol/inst/doc/petzoldt_jss.bib |only simecol-0.6-6/simecol/inst/examples/dynload/clotka.cpp |only simecol-0.6-6/simecol/work |only simecol-0.6-8/simecol/DESCRIPTION | 24 simecol-0.6-8/simecol/R/fitOdeModel.R | 23 simecol-0.6-8/simecol/R/iteration.R | 31 simecol-0.6-8/simecol/R/ssqOdeModel.R | 33 simecol-0.6-8/simecol/data/lv3.rda |binary simecol-0.6-8/simecol/inst/FAQ.txt | 17 simecol-0.6-8/simecol/inst/NEWS | 10 simecol-0.6-8/simecol/inst/THANKS | 29 simecol-0.6-8/simecol/inst/ToDo.txt | 14 simecol-0.6-8/simecol/inst/doc/simecol-howtos.Rnw | 574 ++++++++++- simecol-0.6-8/simecol/inst/doc/simecol-howtos.pdf |binary simecol-0.6-8/simecol/inst/doc/simecol-introduction.Rnw | 5 simecol-0.6-8/simecol/inst/doc/simecol-introduction.pdf |binary simecol-0.6-8/simecol/inst/doc/simecol.bib |only simecol-0.6-8/simecol/inst/doc/vignette.cls |only simecol-0.6-8/simecol/inst/examples/dynload/simecol_clotka.R | 5 simecol-0.6-8/simecol/inst/examples/dynload/test_clotka.R | 2 simecol-0.6-8/simecol/inst/examples/fitOdeModel |only simecol-0.6-8/simecol/inst/examples/lv.R | 21 simecol-0.6-8/simecol/inst/examples/lv3.R | 11 simecol-0.6-8/simecol/man/as.simObj.Rd | 7 simecol-0.6-8/simecol/man/fitOdeModel.Rd | 8 simecol-0.6-8/simecol/man/iteration.Rd | 52 simecol-0.6-8/simecol/man/odeModel.Rd | 60 + simecol-0.6-8/simecol/man/plot-methods.Rd | 12 simecol-0.6-8/simecol/man/simecol-package.Rd | 96 + simecol-0.6-8/simecol/man/ssqOdeModel.Rd | 30 30 files changed, 886 insertions(+), 178 deletions(-)
More information about simecol at CRAN
Path: /cran/updated | permanent link
More information about openNLPmodels.es at CRAN
Path: /cran/new | permanent link
Author: Ingo Feinerer, Kurt Hornik
Title: openNLP Interface
Description: An interface to openNLP (http://opennlp.sourceforge.net/),
a collection of natural language processing tools including a
sentence detector, tokenizer, pos-tagger, shallow and full
syntactic parser, and named-entity detector, using the Maxent
Java package for training and using maximum entropy models.
Diff between openNLP versions 0.0-6 dated 2008-04-14 and 0.0-7 dated 2009-06-27
openNLP-0.0-6/openNLP/inst/doc/openNLP.tex |only openNLP-0.0-6/openNLP/inst/java/maxent-2.4.0.jar |only openNLP-0.0-6/openNLP/inst/java/opennlp-tools-1.3.0.jar |only openNLP-0.0-7/openNLP/DESCRIPTION | 25 +++--- openNLP-0.0-7/openNLP/NAMESPACE | 5 - openNLP-0.0-7/openNLP/R/model.R | 7 + openNLP-0.0-7/openNLP/R/onload.R | 8 - openNLP-0.0-7/openNLP/R/postag.R | 65 +++++++++++----- openNLP-0.0-7/openNLP/R/sentdetect.R | 41 +++++++--- openNLP-0.0-7/openNLP/R/tokenizer.R | 43 +++++++--- openNLP-0.0-7/openNLP/R/transform.R | 12 ++ openNLP-0.0-7/openNLP/R/utils.R |only openNLP-0.0-7/openNLP/inst/doc/openNLP.Rnw | 48 +++++++---- openNLP-0.0-7/openNLP/inst/doc/openNLP.pdf |binary openNLP-0.0-7/openNLP/inst/java/maxent-2.5.2.jar |only openNLP-0.0-7/openNLP/inst/java/opennlp-tools-1.4.3.jar |only openNLP-0.0-7/openNLP/man/sentdetect.Rd | 22 +++-- openNLP-0.0-7/openNLP/man/tagPOS.Rd | 24 +++-- openNLP-0.0-7/openNLP/man/tmSentDetect.Rd | 4 openNLP-0.0-7/openNLP/man/tmTagPOS.Rd | 4 openNLP-0.0-7/openNLP/man/tmTokenize.Rd | 4 openNLP-0.0-7/openNLP/man/tokenize.Rd | 25 +++--- 22 files changed, 221 insertions(+), 116 deletions(-)
More information about openNLP at CRAN
Path: /cran/updated | permanent link
More information about openNLPmodels.en at CRAN
Path: /cran/new | permanent link
More information about foreach at CRAN
Path: /cran/new | permanent link
More information about iterators at CRAN
Path: /cran/new | permanent link
Author: Chris Fraley, Adrian E. Raftery, J. McLean Sloughter, Tilmann
Gneiting, University of Washington With contributions from
Bobby Yuen and Michael Polokowski
Title: Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Description: Bayesian Model Averaging to create probabilistic forecasts
from ensemble forecasts and weather observations.
Diff between ensembleBMA versions 4.2.2 dated 2009-05-19 and 4.3 dated 2009-06-27
ensembleBMA-4.2.2/ensembleBMA/R/ensembleItime.nsembleData.R |only ensembleBMA-4.3/ensembleBMA/CHANGELOG | 3 ensembleBMA-4.3/ensembleBMA/DESCRIPTION | 8 ensembleBMA-4.3/ensembleBMA/R/controlBMAgamma.R | 6 ensembleBMA-4.3/ensembleBMA/R/controlBMAgamma0.R | 6 ensembleBMA-4.3/ensembleBMA/R/ensembleItime.ensembleData.R |only ensembleBMA-4.3/ensembleBMA/R/fitBMAgamma.R | 88 ++- ensembleBMA-4.3/ensembleBMA/R/fitBMAgamma0.R | 280 +++--------- ensembleBMA-4.3/ensembleBMA/man/controlBMAgamma.Rd | 10 ensembleBMA-4.3/ensembleBMA/man/controlBMAgamma0.Rd | 10 10 files changed, 149 insertions(+), 262 deletions(-)
More information about ensembleBMA at CRAN
Path: /cran/updated | permanent link
More information about RSiena at CRAN
Path: /cran/new | permanent link
More information about doMC at CRAN
Path: /cran/new | permanent link
Author: Julian Taylor
Diff between wgaim versions 0.2-2 dated 2009-05-24 and 0.3 dated 2009-06-26
More information about wgaim at CRAN
Title: Whole Genome Average Interval Mapping for QTL detection using
mixed models
Description: This package integrates sophisticated mixed modelling
methods with a whole genome approach to detecting significant
QTL's in linkage maps.
DESCRIPTION | 8 +++---
R/wgaim.R | 63 ++++++++++++++++++++++++++++++++----------------
man/link.map.cross.Rd | 18 ++++++++-----
man/link.map.default.Rd | 11 ++++----
man/link.map.wgaim.Rd | 9 +++---
5 files changed, 68 insertions(+), 41 deletions(-)
Path: /cran/updated | permanent link
Author: Roger Bivand and Danlin Yu
Title: Geographically weighted regression
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Diff between spgwr versions 0.5-12 dated 2009-06-18 and 0.6-2 dated 2009-06-26
ChangeLog | 18 +++ DESCRIPTION | 8 - R/gwr.R | 231 +++++++++++++++++++++++++++++++++++--------------- inst/ChangeLog | 9 + man/LMZ.F3GWR.test.Rd | 8 + man/ggwr.Rd | 3 man/gwr.Rd | 11 +- man/gwr.cv.Rd | 2 8 files changed, 209 insertions(+), 81 deletions(-)
More information about spgwr at CRAN
Path: /cran/updated | permanent link
Author: Tuomas Rajala
Title: Segregation measures for multitype spatial point patterns
Description: Functionals and indices for measuring segregation in
multitype spatial point patterns with graph based neighbourhood
description. Included indices: Mingling, Shannon, Simpson (also
the non-spatial) Included functionals: Mingling, Shannon,
Simpson, ISAR. Included neighbourhoods: Geometric, k-nearest
neighbours, Gabriel, Delauney.
Diff between spatialsegregation versions 1.93 dated 2009-03-10 and 2.05 dated 2009-06-26
spatialsegregation-1.93/spatialsegregation/src/dists.cpp |only spatialsegregation-1.93/spatialsegregation/src/dists.h |only spatialsegregation-2.05/spatialsegregation/DESCRIPTION | 24 +- spatialsegregation-2.05/spatialsegregation/R/fclass.R | 4 spatialsegregation-2.05/spatialsegregation/R/fun.R | 53 ++++ spatialsegregation-2.05/spatialsegregation/R/isar.R | 19 + spatialsegregation-2.05/spatialsegregation/R/mingling.R | 4 spatialsegregation-2.05/spatialsegregation/R/modifiers.R | 1 spatialsegregation-2.05/spatialsegregation/R/shannon.R | 20 + spatialsegregation-2.05/spatialsegregation/change.log | 24 ++ spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-ISAR.Rd | 3 spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-mingling.Rd | 2 spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-segregationFun.Rd | 6 spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-shannon.Rd | 11 - spatialsegregation-2.05/spatialsegregation/man/spatialsegregation-simpson.Rd | 2 spatialsegregation-2.05/spatialsegregation/src/Fun.cpp | 2 spatialsegregation-2.05/spatialsegregation/src/Graph.cpp | 109 +++++----- spatialsegregation-2.05/spatialsegregation/src/Graph.h | 9 spatialsegregation-2.05/spatialsegregation/src/Pp.cpp | 51 ++++ spatialsegregation-2.05/spatialsegregation/src/Pp.h | 14 + spatialsegregation-2.05/spatialsegregation/src/isar.cpp | 73 ++++++ spatialsegregation-2.05/spatialsegregation/src/isar.h | 2 spatialsegregation-2.05/spatialsegregation/src/other.cpp |only spatialsegregation-2.05/spatialsegregation/src/other.h |only spatialsegregation-2.05/spatialsegregation/src/rfun.cpp | 19 + spatialsegregation-2.05/spatialsegregation/src/rgraph.cpp | 16 - spatialsegregation-2.05/spatialsegregation/src/shannon.cpp | 72 ++++++ spatialsegregation-2.05/spatialsegregation/src/shannon.h | 1 28 files changed, 413 insertions(+), 128 deletions(-)
More information about spatialsegregation at CRAN
Path: /cran/updated | permanent link
Author: Jerome Sueur
Diff between seewave versions 1.5.4 dated 2009-03-27 and 1.5.5 dated 2009-06-26
More information about seewave at CRAN
Title: Time wave analysis and graphical representation
Description: seewave provides functions for analysing, manipulating,
displaying, editing and synthesizing time waves (particularly
sound). This package processes time analysis (oscillograms and
envelopes), spectral content, resonance quality factor,
entropy, cross correlation and autocorrelation, zero-crossing,
dominant frequency, analytic signal, frequency coherence, 2D
and 3D spectrograms and many other analyses.
DESCRIPTION | 8
NEWS |only
R/seewave.r |10837 ++++++++++++++++++++++++------------------------
inst/doc/seewave_IO.pdf | 1364 +++---
inst/doc/seewave_IO.rnw | 19
man/H.Rd | 126
man/Q.Rd | 150
man/addsilw.Rd | 100
man/afilter.Rd | 112
man/ama.Rd | 136
man/attenuation.Rd | 108
man/autoc.Rd | 134
man/ccoh.Rd | 216
man/ceps.Rd | 198
man/cepstro.Rd | 174
man/coh.Rd | 126
man/convSPL.Rd | 96
man/corenv.Rd | 180
man/corspec.Rd | 216
man/covspectro.Rd | 180
man/crest.Rd |only
man/csh.Rd | 124
man/cutw.Rd | 116
man/dBscale.Rd | 140
man/dBweight.Rd |only
man/deletew.Rd | 112
man/dfreq.Rd | 122
man/diffenv.Rd | 164
man/diffspec.Rd | 194
man/diffwave.Rd | 142
man/dynspec.rd | 212
man/echo.rd | 130
man/env.Rd | 142
man/export.Rd | 94
man/fadew.rd | 112
man/fdoppler.rd | 138
man/ffilter.Rd | 148
man/field.rd | 138
man/fir.Rd | 166
man/ftwindow.Rd | 100
man/fund.Rd | 128
man/hilbert.Rd | 88
man/ifreq.Rd | 164
man/lfs.Rd | 112
man/listen.Rd | 94
man/meanspec.Rd | 256 -
man/mel.Rd | 108
man/moredB.Rd | 78
man/mutew.Rd | 112
man/noise.Rd | 88
man/orni.Rd | 52
man/oscillo.Rd | 240 -
man/oscilloST.Rd | 136
man/pastew.Rd | 136
man/peewit.Rd | 52
man/pellucens.Rd | 68
man/pulse.Rd | 78
man/repw.rd | 80
man/resamp.Rd | 80
man/revw.Rd | 108
man/rmam.Rd | 98
man/rmoffset.Rd | 86
man/rms.Rd |only
man/savewav.Rd | 100
man/seewave.internal.rd | 66
man/seewave.package.Rd | 87
man/setenv.rd | 124
man/sfm.Rd | 92
man/sh.Rd | 108
man/sheep.Rd | 70
man/simspec.Rd | 182
man/spec.Rd | 278 -
man/specprop.Rd | 192
man/spectro.Rd | 315 -
man/spectro3D.Rd | 162
man/synth.Rd | 202
man/th.Rd | 128
man/tico.Rd | 52
man/timer.Rd | 106
man/wasp.rd | 202
man/wf.Rd | 6
man/zapsilw.rd | 90
man/zc.rd | 146
83 files changed, 11254 insertions(+), 10870 deletions(-)
Path: /cran/updated | permanent link
Author: Timothy H. Keitt
Diff between rgdal versions 0.6-8 dated 2009-04-30 and 0.6-9 dated 2009-06-26
More information about rgdal at CRAN
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
ChangeLog | 37 +++++++++++
DESCRIPTION | 8 +-
R/ogr.R | 15 ++++
R/ogr_sp.R | 44 +++++++++++--
configure.win | 11 +--
inst/ChangeLog | 44 +++++++++++++
inst/README.windows | 10 +--
inst/vectors/test_trk2.gpx |only
inst/vectors/trin_inca_pl03.dbf |only
inst/vectors/trin_inca_pl03.shp |only
inst/vectors/trin_inca_pl03.shx |only
man/project.Rd | 2
man/readOGR.Rd | 16 ++++-
src/ogr_geom.cpp | 126 ++++++++++++++++++++++++++--------------
src/ogrsource.cpp | 25 +++++++
15 files changed, 271 insertions(+), 67 deletions(-)
Path: /cran/updated | permanent link
Author: William Revelle
Diff between psych versions 1.0-72 dated 2009-06-02 and 1.0-74 dated 2009-06-26
More information about psych at CRAN
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale
construction using factor analysis, cluster analysis and
reliability analysis, although others provide basic descriptive
statistics. Functions for simulating particular item and test
structures are included. Several functions serve as a useful
front end for structural equation modeling. For more
information, see the personality-project.org/r webpage.
CHANGES | 19
DESCRIPTION | 8
NAMESPACE | 2
R/ICLUST.R | 10
R/ICLUST.cluster.R | 245
R/VSS.R | 2
R/cluster.cor.R | 5
R/cluster.loadings.R | 10
R/cor.plot.R | 2
R/fa.R | 67
R/factor.stats.R | 3
R/factor.wls.R | 17
R/mat.plot.R |only
R/mat.sort.R |only
R/phi.demo.R | 2
R/print.psych.omega.R | 4
R/read.clipboard.csv.R | 11
R/schmid.R | 28
R/sim.structural.R | 5
R/super.matrix.R | 11
R/test.psych.r | 9
fa.indeterm.r |only
factor.indeterm.r |only
inst/NEWS | 14
inst/doc/all.bib | 146
inst/doc/overview.Rnw | 107
inst/doc/overview.pdf |22142 +++++++++++++++++++++++----------------------
inst/doc/psych_for_sem.pdf | 5758 +++++------
man/ICLUST.Rd | 38
man/cluster.loadings.Rd | 3
man/cor.plot.Rd | 6
man/fa.Rd | 19
man/mat.sort.Rd |only
man/omega.Rd | 13
man/phi.demo.Rd | 5
man/read.clipboard.Rd | 6
man/schmid.Rd | 6
man/sim.structural.Rd | 3
man/structure.list.Rd | 2
39 files changed, 15163 insertions(+), 13565 deletions(-)
Path: /cran/updated | permanent link
Author: Sven Adler
Title: WA, WA-PLS, MW and POM for paleolimnology
Description: This package contains functions for paleolimnology -
wa-regression (see also package analogue by G. Simpson!),
wa-pls and the mowing-window approch. The function palplot
allows a first plot of the data including a trend analysis. The
pom function is just a first test version.
Diff between paltran versions 1.0-0 dated 2008-05-05 and 1.1 dated 2009-06-26
paltran-1.0-0/paltran/R/best.wapls.R |only paltran-1.0-0/paltran/R/mwtraf.R |only paltran-1.0-0/paltran/data/age_dud.rda |only paltran-1.0-0/paltran/man/age_dud.Rd |only paltran-1.0-0/paltran/man/best.wapls.Rd |only paltran-1.0-0/paltran/man/mwtraf.Rd |only paltran-1.1/paltran/DESCRIPTION | 33 paltran-1.1/paltran/R/mw.R |only paltran-1.1/paltran/R/palplot.R | 266 +++++-- paltran-1.1/paltran/R/pom.R | 1008 ++++++++++++++++++++--------- paltran-1.1/paltran/R/wa.R | 811 +++++++++++++++++------ paltran-1.1/paltran/R/wapls.R | 987 ++++++++++++++++++++-------- paltran-1.1/paltran/data/age.dud.rda |only paltran-1.1/paltran/data/dud.df.rda |binary paltran-1.1/paltran/data/train_env.MV.rda |binary paltran-1.1/paltran/data/train_set.MV.rda |binary paltran-1.1/paltran/man/age.dud.Rd |only paltran-1.1/paltran/man/dud.df.Rd | 30 paltran-1.1/paltran/man/mw.Rd |only paltran-1.1/paltran/man/palplot.Rd | 96 +- paltran-1.1/paltran/man/paltran-package.Rd |only paltran-1.1/paltran/man/pom.Rd | 118 +-- paltran-1.1/paltran/man/train_env.MV.Rd | 21 paltran-1.1/paltran/man/train_set.MV.Rd | 24 paltran-1.1/paltran/man/wa.Rd | 101 +- paltran-1.1/paltran/man/wapls.Rd | 100 +- 26 files changed, 2453 insertions(+), 1142 deletions(-)
More information about paltran at CRAN
Path: /cran/updated | permanent link
Author: Sebastien Dejean, Ignacio Gonzalez and Kim-Anh Le Cao
Title: Integrate Omics data project
Description: The package supplies two efficients nethodologies:
regularized CCA and sparse PLS to unravel relationships between
two heterogeneous data sets of size (nxp) and (nxq) where the p
and q variables are measured on the same samples or individuals
n. These data may come from high throughput technologies, such
as omics data, among which transcriptomics, metabolomics or
proteomics data that require an integrative or joint analysis.
However, integrOmics can also be applied to any other large
data sets where p+q>>n. rCCA is a regularized version of CCA to
deal with the large number of variables. sPLS allows variable
selection in a one step procedure and two frameworks are
proposed: regression and canonical analysis. Numerous graphical
outputs are provided to help interpreting the results.
Diff between integrOmics versions 1.0 dated 2009-05-17 and 2.1 dated 2009-06-26
integrOmics-1.0/integrOmics/R/img.estim.regul.R |only integrOmics-1.0/integrOmics/R/print.pls.R |only integrOmics-1.0/integrOmics/R/print.summary.R |only integrOmics-1.0/integrOmics/R/rcc.default.R |only integrOmics-1.0/integrOmics/man/img.estim.regul.Rd |only integrOmics-1.0/integrOmics/man/rCCAsPLS-package.Rd |only integrOmics-2.1/integrOmics/DESCRIPTION | 28 integrOmics-2.1/integrOmics/NAMESPACE | 36 integrOmics-2.1/integrOmics/R/estim.regul.R | 8 integrOmics-2.1/integrOmics/R/image.estim.regul.R |only integrOmics-2.1/integrOmics/R/imgCor.R | 4 integrOmics-2.1/integrOmics/R/plotIndiv.R | 251 +++--- integrOmics-2.1/integrOmics/R/plotVar.R | 738 +++++++++---------- integrOmics-2.1/integrOmics/R/pls.R | 12 integrOmics-2.1/integrOmics/R/predict.R | 130 +-- integrOmics-2.1/integrOmics/R/print.methods.R |only integrOmics-2.1/integrOmics/R/rcc.R | 179 ++-- integrOmics-2.1/integrOmics/R/rccNet.R |only integrOmics-2.1/integrOmics/R/spls.R | 399 +++++----- integrOmics-2.1/integrOmics/R/summary.R | 443 +++++------ integrOmics-2.1/integrOmics/R/valid.R | 72 + integrOmics-2.1/integrOmics/man/cim.Rd | 9 integrOmics-2.1/integrOmics/man/estim.regul.Rd | 6 integrOmics-2.1/integrOmics/man/image.estim.regul.Rd |only integrOmics-2.1/integrOmics/man/imgCor.Rd | 7 integrOmics-2.1/integrOmics/man/jet.colors.Rd | 2 integrOmics-2.1/integrOmics/man/linnerud.Rd | 12 integrOmics-2.1/integrOmics/man/liver.toxicity.Rd | 16 integrOmics-2.1/integrOmics/man/multidrug.Rd | 30 integrOmics-2.1/integrOmics/man/nipals.Rd | 2 integrOmics-2.1/integrOmics/man/nutrimouse.Rd | 18 integrOmics-2.1/integrOmics/man/plotIndiv.Rd | 26 integrOmics-2.1/integrOmics/man/plotVar.Rd | 22 integrOmics-2.1/integrOmics/man/pls.Rd | 17 integrOmics-2.1/integrOmics/man/predict.Rd | 20 integrOmics-2.1/integrOmics/man/print.methods.Rd |only integrOmics-2.1/integrOmics/man/rcc-internal.Rd | 2 integrOmics-2.1/integrOmics/man/rcc.Rd | 9 integrOmics-2.1/integrOmics/man/rccNet.Rd |only integrOmics-2.1/integrOmics/man/s.match.Rd | 103 +- integrOmics-2.1/integrOmics/man/scatterutil.Rd | 16 integrOmics-2.1/integrOmics/man/spls.Rd | 19 integrOmics-2.1/integrOmics/man/summary.Rd | 80 -- integrOmics-2.1/integrOmics/man/valid.Rd | 46 - integrOmics-2.1/integrOmics/man/vip.Rd | 2 45 files changed, 1387 insertions(+), 1377 deletions(-)
More information about integrOmics at CRAN
Path: /cran/updated | permanent link
Author: Patrick E. Meyer
Title: Information-Theoretic Measures
Description: This package implements various measures of information
theory based on several implemented entropy estimators.
Diff between infotheo versions 1.0.0 dated 2009-06-25 and 1.0.1 dated 2009-06-26
DESCRIPTION | 10 +++++----- src/entropy.cpp | 4 ++-- 2 files changed, 7 insertions(+), 7 deletions(-)
More information about infotheo at CRAN
Path: /cran/updated | permanent link
Author: Vinzenz Erhardt
Title: Zero Inflated Generalized Poisson (ZIGP) regression models
Description: Fit, analyze and compare GP, ZIP and ZIGP regression
models
Diff between ZIGP versions 3.5 dated 2009-05-13 and 3.6 dated 2009-06-26
ZIGP-3.5/ZIGP/R/FM.r |only ZIGP-3.5/ZIGP/man/FM.rd |only ZIGP-3.5/ZIGP/man/ZIGP-package.rd |only ZIGP-3.6/ZIGP/DESCRIPTION | 8 ++++---- ZIGP-3.6/ZIGP/R/est.zigp.r | 17 ++++++++++++++++- ZIGP-3.6/ZIGP/R/fm.r |only ZIGP-3.6/ZIGP/man/fm.rd |only ZIGP-3.6/ZIGP/man/zigp-package.rd |only 8 files changed, 20 insertions(+), 5 deletions(-)
More information about ZIGP at CRAN
Path: /cran/updated | permanent link
Author: Greg Snow
Title: Demonstrations for teaching and learning
Description: This package is a set of demonstration functions that can
be used in a classroom to demonstrate statistical concepts, or
on your own to better understand the concepts or the
programming.
Diff between TeachingDemos versions 2.3 dated 2008-07-08 and 2.4 dated 2009-06-26
TeachingDemos-2.3/TeachingDemos/MM_Interact_manual.pdf |only TeachingDemos-2.3/TeachingDemos/MM_interact_fun.R |only TeachingDemos-2.3/TeachingDemos/MichaelMeredith.html |only TeachingDemos-2.3/TeachingDemos/R/strip.shingle.R |only TeachingDemos-2.3/TeachingDemos/man/strip.shingle.Rd |only TeachingDemos-2.4/TeachingDemos/DESCRIPTION | 29 - TeachingDemos-2.4/TeachingDemos/NAMESPACE | 9 TeachingDemos-2.4/TeachingDemos/NEWS | 40 ++ TeachingDemos-2.4/TeachingDemos/R/Pvalue.sim.R |only TeachingDemos-2.4/TeachingDemos/R/R2txt.R | 14 TeachingDemos-2.4/TeachingDemos/R/TkPredict.R |only TeachingDemos-2.4/TeachingDemos/R/gp.splot.R |only TeachingDemos-2.4/TeachingDemos/R/ineq.R |only TeachingDemos-2.4/TeachingDemos/R/loess.demo.R | 8 TeachingDemos-2.4/TeachingDemos/R/mle.demo.R | 2 TeachingDemos-2.4/TeachingDemos/R/mysymbols.R | 181 ++++------ TeachingDemos-2.4/TeachingDemos/R/panel.mysymbols.R |only TeachingDemos-2.4/TeachingDemos/R/plot2script.R | 13 TeachingDemos-2.4/TeachingDemos/R/prob.axis.R |only TeachingDemos-2.4/TeachingDemos/R/range.R |only TeachingDemos-2.4/TeachingDemos/R/shadowtext.R |only TeachingDemos-2.4/TeachingDemos/R/squishplot.R | 4 TeachingDemos-2.4/TeachingDemos/R/subplot.R | 39 +- TeachingDemos-2.4/TeachingDemos/R/tkexamp.R | 95 +++-- TeachingDemos-2.4/TeachingDemos/R/vis.binom.R | 4 TeachingDemos-2.4/TeachingDemos/R/vis.boxcox.R | 3 TeachingDemos-2.4/TeachingDemos/R/vis.gamma.R | 4 TeachingDemos-2.4/TeachingDemos/R/vis.normal.R | 3 TeachingDemos-2.4/TeachingDemos/R/vis.t.R | 5 TeachingDemos-2.4/TeachingDemos/SyncToy_726f062a-4434-4055-9168-9e4dfdf9d479.dat |only TeachingDemos-2.4/TeachingDemos/SyncToy_cc1ca190-d98a-47e0-ad69-312b9db9af9b.dat |only TeachingDemos-2.4/TeachingDemos/data/evap.rda |only TeachingDemos-2.4/TeachingDemos/data/state.vbm.rda |binary TeachingDemos-2.4/TeachingDemos/data/stork.rda |only TeachingDemos-2.4/TeachingDemos/man/Pvalue.sim.Rd |only TeachingDemos-2.4/TeachingDemos/man/TeachingDemos-package.Rd | 15 TeachingDemos-2.4/TeachingDemos/man/TkPredict.Rd |only TeachingDemos-2.4/TeachingDemos/man/clipplot.Rd | 5 TeachingDemos-2.4/TeachingDemos/man/evap.Rd |only TeachingDemos-2.4/TeachingDemos/man/gp.open.Rd | 9 TeachingDemos-2.4/TeachingDemos/man/ineq.Rd |only TeachingDemos-2.4/TeachingDemos/man/ms.polygram.Rd | 2 TeachingDemos-2.4/TeachingDemos/man/panel.mysymbols.Rd |only TeachingDemos-2.4/TeachingDemos/man/slider.Rd | 76 ---- TeachingDemos-2.4/TeachingDemos/man/squishplot.Rd | 6 TeachingDemos-2.4/TeachingDemos/man/state.vbm.Rd | 9 TeachingDemos-2.4/TeachingDemos/man/stork.Rd |only TeachingDemos-2.4/TeachingDemos/man/subplot.Rd | 32 + TeachingDemos-2.4/TeachingDemos/man/tkexamp.Rd | 27 + 49 files changed, 381 insertions(+), 253 deletions(-)
More information about TeachingDemos at CRAN
Path: /cran/updated | permanent link
Author: Stefan Theussl and Kurt Hornik
Title: R/GNU Linear Programming Kit Interface
Description: R interface to the GNU Linear Programing Kit (GLPK version
4.37). GLPK is open source software for solving large-scale
linear programming (LP), mixed integer linear programming
(MILP) and other related problems.
Diff between Rglpk versions 0.2-9 dated 2009-03-31 and 0.3-1 dated 2009-06-26
Rglpk-0.2-9/Rglpk/R/sparse.R |only Rglpk-0.3-1/Rglpk/DESCRIPTION | 15 ++++++--------- Rglpk-0.3-1/Rglpk/NAMESPACE | 10 +--------- Rglpk-0.3-1/Rglpk/Rglpk.h |only Rglpk-0.3-1/Rglpk/Rglpk_initialize.c |only Rglpk-0.3-1/Rglpk/Rglpk_read_file.c |only Rglpk-0.3-1/Rglpk/Rglpk_solve.c |only Rglpk-0.3-1/Rglpk/glpapi.h |only Rglpk-0.3-1/Rglpk/glpapi01.c |only Rglpk-0.3-1/Rglpk/glpapi02.c |only Rglpk-0.3-1/Rglpk/glpapi03.c |only Rglpk-0.3-1/Rglpk/glpapi04.c |only Rglpk-0.3-1/Rglpk/glpapi05.c |only Rglpk-0.3-1/Rglpk/glpapi06.c |only Rglpk-0.3-1/Rglpk/glpapi07.c |only Rglpk-0.3-1/Rglpk/glpapi08.c |only Rglpk-0.3-1/Rglpk/glpapi09.c |only Rglpk-0.3-1/Rglpk/glpapi10.c |only Rglpk-0.3-1/Rglpk/glpapi11.c |only Rglpk-0.3-1/Rglpk/glpapi12.c |only Rglpk-0.3-1/Rglpk/glpapi13.c |only Rglpk-0.3-1/Rglpk/glpapi14.c |only Rglpk-0.3-1/Rglpk/glpapi15.c |only Rglpk-0.3-1/Rglpk/glpapi16.c |only Rglpk-0.3-1/Rglpk/glpapi17.c |only Rglpk-0.3-1/Rglpk/glpapi18.c |only Rglpk-0.3-1/Rglpk/glpapi19.c |only Rglpk-0.3-1/Rglpk/glpapi20.c |only Rglpk-0.3-1/Rglpk/glpavl.c |only Rglpk-0.3-1/Rglpk/glpavl.h |only Rglpk-0.3-1/Rglpk/glpbfd.c |only Rglpk-0.3-1/Rglpk/glpbfd.h |only Rglpk-0.3-1/Rglpk/glpbfx.c |only Rglpk-0.3-1/Rglpk/glpbfx.h |only Rglpk-0.3-1/Rglpk/glpcpx.c |only Rglpk-0.3-1/Rglpk/glpcpx.h |only Rglpk-0.3-1/Rglpk/glpdmp.c |only Rglpk-0.3-1/Rglpk/glpdmp.h |only Rglpk-0.3-1/Rglpk/glpdmx.c |only Rglpk-0.3-1/Rglpk/glpfhv.c |only Rglpk-0.3-1/Rglpk/glpfhv.h |only Rglpk-0.3-1/Rglpk/glpgmp.c |only Rglpk-0.3-1/Rglpk/glpgmp.h |only Rglpk-0.3-1/Rglpk/glphbm.c |only Rglpk-0.3-1/Rglpk/glphbm.h |only Rglpk-0.3-1/Rglpk/glpini.h |only Rglpk-0.3-1/Rglpk/glpini01.c |only Rglpk-0.3-1/Rglpk/glpini02.c |only Rglpk-0.3-1/Rglpk/glpios.h |only Rglpk-0.3-1/Rglpk/glpios01.c |only Rglpk-0.3-1/Rglpk/glpios02.c |only Rglpk-0.3-1/Rglpk/glpios03.c |only Rglpk-0.3-1/Rglpk/glpios04.c |only Rglpk-0.3-1/Rglpk/glpios05.c |only Rglpk-0.3-1/Rglpk/glpios06.c |only Rglpk-0.3-1/Rglpk/glpios07.c |only Rglpk-0.3-1/Rglpk/glpios08.c |only Rglpk-0.3-1/Rglpk/glpios09.c |only Rglpk-0.3-1/Rglpk/glpios10.c |only Rglpk-0.3-1/Rglpk/glpipm.c |only Rglpk-0.3-1/Rglpk/glpipm.h |only Rglpk-0.3-1/Rglpk/glpipp.h |only Rglpk-0.3-1/Rglpk/glpipp01.c |only Rglpk-0.3-1/Rglpk/glpipp02.c |only Rglpk-0.3-1/Rglpk/glpk.h |only Rglpk-0.3-1/Rglpk/glplib.h |only Rglpk-0.3-1/Rglpk/glplib01.c |only Rglpk-0.3-1/Rglpk/glplib02.c |only Rglpk-0.3-1/Rglpk/glplib03.c |only Rglpk-0.3-1/Rglpk/glplib04.c |only Rglpk-0.3-1/Rglpk/glplib05.c |only Rglpk-0.3-1/Rglpk/glplib06.c |only Rglpk-0.3-1/Rglpk/glplib07.c |only Rglpk-0.3-1/Rglpk/glplib08.c |only Rglpk-0.3-1/Rglpk/glplib09.c |only Rglpk-0.3-1/Rglpk/glplib10.c |only Rglpk-0.3-1/Rglpk/glplib11.c |only Rglpk-0.3-1/Rglpk/glplib12.c |only Rglpk-0.3-1/Rglpk/glplpf.c |only Rglpk-0.3-1/Rglpk/glplpf.h |only Rglpk-0.3-1/Rglpk/glplpp.h |only Rglpk-0.3-1/Rglpk/glplpp01.c |only Rglpk-0.3-1/Rglpk/glplpp02.c |only Rglpk-0.3-1/Rglpk/glplpx01.c |only Rglpk-0.3-1/Rglpk/glplpx02.c |only Rglpk-0.3-1/Rglpk/glplpx03.c |only Rglpk-0.3-1/Rglpk/glplpx04.c |only Rglpk-0.3-1/Rglpk/glplpx05.c |only Rglpk-0.3-1/Rglpk/glpluf.c |only Rglpk-0.3-1/Rglpk/glpluf.h |only Rglpk-0.3-1/Rglpk/glplux.c |only Rglpk-0.3-1/Rglpk/glplux.h |only Rglpk-0.3-1/Rglpk/glpmat.c |only Rglpk-0.3-1/Rglpk/glpmat.h |only Rglpk-0.3-1/Rglpk/glpmpl.h |only Rglpk-0.3-1/Rglpk/glpmpl01.c |only Rglpk-0.3-1/Rglpk/glpmpl02.c |only Rglpk-0.3-1/Rglpk/glpmpl03.c |only Rglpk-0.3-1/Rglpk/glpmpl04.c |only Rglpk-0.3-1/Rglpk/glpmpl05.c |only Rglpk-0.3-1/Rglpk/glpmpl06.c |only Rglpk-0.3-1/Rglpk/glpmps.c |only Rglpk-0.3-1/Rglpk/glpnet.h |only Rglpk-0.3-1/Rglpk/glpnet01.c |only Rglpk-0.3-1/Rglpk/glpnet02.c |only Rglpk-0.3-1/Rglpk/glpnet03.c |only Rglpk-0.3-1/Rglpk/glpnet04.c |only Rglpk-0.3-1/Rglpk/glpnet05.c |only Rglpk-0.3-1/Rglpk/glpnet06.c |only Rglpk-0.3-1/Rglpk/glpnet07.c |only Rglpk-0.3-1/Rglpk/glpnpp.h |only Rglpk-0.3-1/Rglpk/glpnpp01.c |only Rglpk-0.3-1/Rglpk/glpnpp02.c |only Rglpk-0.3-1/Rglpk/glpqmd.c |only Rglpk-0.3-1/Rglpk/glpqmd.h |only Rglpk-0.3-1/Rglpk/glprgr.c |only Rglpk-0.3-1/Rglpk/glprgr.h |only Rglpk-0.3-1/Rglpk/glprng.h |only Rglpk-0.3-1/Rglpk/glprng01.c |only Rglpk-0.3-1/Rglpk/glprng02.c |only Rglpk-0.3-1/Rglpk/glpscf.c |only Rglpk-0.3-1/Rglpk/glpscf.h |only Rglpk-0.3-1/Rglpk/glpscg.c |only Rglpk-0.3-1/Rglpk/glpscg.h |only Rglpk-0.3-1/Rglpk/glpscl.c |only Rglpk-0.3-1/Rglpk/glpscl.h |only Rglpk-0.3-1/Rglpk/glpsds.c |only Rglpk-0.3-1/Rglpk/glpspm.c |only Rglpk-0.3-1/Rglpk/glpspm.h |only Rglpk-0.3-1/Rglpk/glpspx.h |only Rglpk-0.3-1/Rglpk/glpspx01.c |only Rglpk-0.3-1/Rglpk/glpspx02.c |only Rglpk-0.3-1/Rglpk/glpsql.c |only Rglpk-0.3-1/Rglpk/glpsql.h |only Rglpk-0.3-1/Rglpk/glpssx.h |only Rglpk-0.3-1/Rglpk/glpssx01.c |only Rglpk-0.3-1/Rglpk/glpssx02.c |only Rglpk-0.3-1/Rglpk/glpstd.h |only Rglpk-0.3-1/Rglpk/glptsp.c |only Rglpk-0.3-1/Rglpk/glptsp.h |only Rglpk-0.3-1/Rglpk/inst/CHANGELOG | 6 ++++++ 141 files changed, 13 insertions(+), 18 deletions(-)
More information about Rglpk at CRAN
Path: /cran/updated | permanent link
Author: Daniel Ho
Diff between MatchIt versions 2.4-10 dated 2009-02-03 and 2.4-11 dated 2009-06-26
More information about MatchIt at CRAN
Title: MatchIt
Description: MatchIt preprocesses data by selecting approximate matched
samples of the treated and control groups with similar
covariate distributions, drawing on a large variety of matching
methods. After preprocessing data with MatchIt, whatever
standard parametric technique one might have used without
preprocessing can be used, but the results will be far less
model dependent.
DESCRIPTION | 26
R/hist.pscore.R | 49
R/jitter.pscore.R | 31
R/matchit.qqplot.R | 20
R/plot.matchit.R | 6
R/plot.matchit.subclass.R | 8
inst/CITATION |only
inst/doc/balance.tex | 86
inst/doc/figs/hist.pdf | 452
inst/doc/figs/jitterplotnn.pdf | 7126 ++++++++-------
inst/doc/figs/qqplotnn1.pdf | 8146 ++++++++++++++---
inst/doc/index.shtml | 2
inst/doc/matchit.aux | 116
inst/doc/matchit.log | 67
inst/doc/matchit.pdf |19018 +++++++++++++++++++++++++++--------------
inst/doc/matchit.tex | 2
inst/doc/matchit.toc | 84
17 files changed, 23643 insertions(+), 11596 deletions(-)
Path: /cran/updated | permanent link
More information about slam at CRAN
Path: /cran/new | permanent link
Author: Christina Stahl and David Meyer
Title: Knowledge Space Theory
Description: Knowledge Space Theory is a set-theoretical framework,
which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The kst-package
provides basic functionalities to generate, handle, and
manipulate knowledge structures and knowledge spaces.
Diff between kst versions 0.1-9 dated 2009-06-24 and 0.1-10 dated 2009-06-26
DESCRIPTION | 8 ++++---- R/reduction.kstructure.R | 2 +- inst/doc/kst.pdf |binary 3 files changed, 5 insertions(+), 5 deletions(-)
More information about kst at CRAN
Path: /cran/updated | permanent link
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.0.1 dated 2009-06-25 and 2.9.0.2 dated 2009-06-25
More information about epicalc at CRAN
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 6 +++---
data/IudAdmit.rdata |only
data/IudDiscontinue.rdata |only
data/IudFollowup.rdata |only
man/IudAdmit.rd |only
man/IudDiscontinue.rd |only
man/IudFollowup.rd |only
7 files changed, 3 insertions(+), 3 deletions(-)
Path: /cran/updated | permanent link
Author: Ingo Feinerer, Kurt Hornik
Title: WordNet Interface
Description: An interface to WordNet using the Jawbone Java API to
WordNet. WordNet is an on-line lexical reference system
developed by the Cognitive Science Laboratory at Princeton
University. Its design is inspired by current psycholinguistic
theories of human lexical memory. English nouns, verbs,
adjectives and adverbs are organized into synonym sets, each
representing one underlying lexical concept. Different
relations link the synonym sets.
Diff between wordnet versions 0.1-3 dated 2008-05-02 and 0.1-4 dated 2009-06-25
DESCRIPTION | 31 +++++++++------- NAMESPACE | 2 + R/AAA.R | 4 +- R/dictionary.R | 94 ++++++++++++++++++++++++--------------------------- R/indexterm.R | 20 ++++++---- R/onload.R | 13 +++---- R/synonyms.R | 10 +++-- R/synsets.R | 11 ++++- R/termfilter.R | 18 +++++---- inst/CITATION | 54 +++++++++++++++-------------- inst/doc/wordnet.pdf |binary inst/doc/wordnet.tex |only 12 files changed, 141 insertions(+), 116 deletions(-)
More information about wordnet at CRAN
Path: /cran/updated | permanent link
Author: Ingo Feinerer, Kurt Hornik
Title: R/KEA interface
Description: An R interface to KEA (Version 5.0). KEA (for Keyphrase
Extraction Algorithm) allows for extracting keyphrases from
text documents. It can be either used for free indexing or for
indexing with a controlled vocabulary. For more information see
http://www.nzdl.org/Kea/.
Diff between RKEA versions 0.0-1 dated 2008-07-11 and 0.0-2 dated 2009-06-25
DESCRIPTION | 22 ++++++++----- NAMESPACE | 2 + R/kea.R | 87 ++++++++++++++++++++++++++++++++++++++++++++----------- R/onLoad.R | 23 +++++++++----- inst/doc/kea.Rnw | 20 ++++++++---- inst/doc/kea.pdf |binary inst/stopwords |only 7 files changed, 115 insertions(+), 39 deletions(-)
More information about RKEA at CRAN
Path: /cran/updated | permanent link
Author: Arnost Komarek
Diff between smoothSurv versions 0.4 dated 2009-04-27 and 0.5-1 dated 2009-06-25
More information about smoothSurv at CRAN
Title: Survival Regression with Smoothed Error Distribution
Description: This package contains primarily a function to fit a
regression model with possibly right, left or interval censored
observations and with the error distrbution expressed as a
mixture of G-splines. Core part of the computation is done in
compiled C++ written using the Scythe Statistical Libary
Version 0.3.
CHANGES | 5 ++++
DESCRIPTION | 8 +++----
R/estimTdiff.R | 25 ++++++++++++++++++---
R/print.estimTdiff.R | 58 +++++++++++++++++++++++++++++++--------------------
man/estimTdiff.Rd | 17 +++++++++-----
man/give.c.Rd | 2 -
6 files changed, 78 insertions(+), 37 deletions(-)
Path: /cran/updated | permanent link
More information about multmod at CRAN
Path: /cran/new | permanent link
More information about infotheo at CRAN
Path: /cran/new | permanent link
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Mariano Devoto, Jochen Fruend, Jose Iriondo and Diego Vazquez,
also based on C-code developed by Nils Bluethgen and by Miguel
Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 0.92 dated 2009-06-03 and 0.93 dated 2009-06-25
.hg/branch.cache | 4 ++-- .hg/dirstate |binary .hg/store/00changelog.i |binary .hg/store/00manifest.i |binary .hg/store/data/_d_e_s_c_r_i_p_t_i_o_n.i |binary .hg/store/data/_r/empty._r.i |binary .hg/store/data/_r/functspec.r.i |binary .hg/store/data/_r/networklevel._r.i |binary .hg/store/data/_r/nodespec.r.i |binary .hg/store/data/_r/plotweb._r.i |binary .hg/store/data/_r/robustness.r.i |only .hg/store/data/_r/second.extinct._r.i |binary .hg/store/data/_r/visweb._r.i |binary .hg/store/data/_r/wine.r.i |only .hg/store/data/_r/zzz._r.i |binary .hg/store/data/_wishlist.txt.i |binary .hg/store/data/data/ollerton2003.rda.i |only .hg/store/data/man/_c.score._rd.i |binary .hg/store/data/man/bipartite-package._rd.i |binary .hg/store/data/man/discrepancy.rd.i |binary .hg/store/data/man/inouye1988._rd.i |binary .hg/store/data/man/nestedness._rd.i |binary .hg/store/data/man/networklevel._rd.i |binary .hg/store/data/man/ollerton2003._rd.i |only .hg/store/data/man/robustness.rd.i |only .hg/store/data/man/swap.web._rd.i |binary .hg/store/data/man/vazquez.example.rd.i |binary .hg/store/data/man/visweb._rd.i |binary .hg/store/data/man/wine.rd.i |only .hg/store/undo |binary .hg/undo.dirstate |binary DESCRIPTION | 10 +++++----- R/robustness.r | 2 +- R/slope.bipartite.R | 8 ++++---- man/bipartite-package.Rd | 14 +++++++++----- 35 files changed, 21 insertions(+), 17 deletions(-)
More information about bipartite at CRAN
Path: /cran/updated | permanent link
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Title: Tools for parsing and generating XML within R and S-Plus.
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Diff between XML versions 2.5-1 dated 2009-06-07 and 2.5-3 dated 2009-06-25
Changes | 10 ++++++++ DESCRIPTION | 8 +++--- INSTALL | 2 - configure | 56 ++++++++++++++++++++++++++++++++++++++++++++++ configure.in | 19 +++++++++++++++ man/getRelativeURL.Rd | 2 - man/libxmlVersion.Rd | 3 ++ man/xmlSchemaValidate.Rd | 10 ++++---- src/DocParse.c | 1 src/RS_XML.h | 2 - src/Utils.c | 5 ++-- src/XMLEventParse.c | 2 + src/XMLTree.c | 57 ++++++++++++++++++++++++++++++++++++++--------- src/libxmlFeatures.c | 6 ++++ 14 files changed, 159 insertions(+), 24 deletions(-)
More information about XML at CRAN
Path: /cran/updated | permanent link
Author: Marc Schwartz
Diff between WriteXLS versions 1.8.0 dated 2009-06-17 and 1.8.1 dated 2009-06-25
More information about WriteXLS at CRAN
Title: Cross-platform Perl based R function to create Excel 2003 (XLS)
files
Description: Cross-platform perl based R function to create Excel (XLS)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it
contains or can be specified by the user.
DESCRIPTION | 12 +++++-------
INSTALL | 7 +++----
R/WriteXLS.R | 5 +++++
R/testPerl.R | 1 -
inst/INSTALL |only
inst/Perl/WriteXLS.pl | 19 +++++++++++--------
man/WriteXLS.Rd | 11 +++++++++--
man/testPerl.Rd | 2 +-
8 files changed, 34 insertions(+), 23 deletions(-)
Path: /cran/updated | permanent link
Author: Stefano Maria Iacus
Title: Simulation and Inference for Stochastic Differential Equations
Description: Companion package to the book Simulation and Inference for
Stochastic Differential Equations With R Examples, ISBN
978-0-387-75838-1, Springer, NY.
Diff between sde versions 2.0.6 dated 2009-06-19 and 2.0.7 dated 2009-06-25
DESCRIPTION | 8 ++++---- R/zzz.R | 2 +- inst/book/ex1.14.R | 6 +++--- inst/doc/changes.txt | 7 +++++++ inst/doc/sde.errata.Rnw |only inst/doc/sde.errata.aux |only inst/doc/sde.errata.log |only inst/doc/sde.errata.pdf |only 8 files changed, 15 insertions(+), 8 deletions(-)
More information about sde at CRAN
Path: /cran/updated | permanent link
Author: Charles Kooperberg
Diff between polspline versions 1.1.2 dated 2009-01-27 and 1.1.3 dated 2009-06-25
More information about polspline at CRAN
Title: Polynomial spline routines
Description: Routines for the polynomial spline fitting routines hazard
regression, hazard estimation with flexible tails, logspline,
lspec, polyclass, and polymars, by C. Kooperberg and co-authors
DESCRIPTION | 12 +++++++-----
src/polyall.c | 8 ++++----
2 files changed, 11 insertions(+), 9 deletions(-)
Path: /cran/updated | permanent link
Author: Arnost Komarek
Diff between mixAK versions 0.3 dated 2009-05-07 and 0.4 dated 2009-06-25
More information about mixAK at CRAN
Title: Mixture of methods including mixtures
Description: This package contains a mixture of statistical methods
including the MCMC methods to analyze normal mixtures
DESCRIPTION | 8 ++--
R/NMixChainsDerived.R |only
R/NMixClust.R |only
R/NMixMCMC.R | 2 -
R/NMixPlugCondDensJoint2.NMixMCMC.R |only
R/NMixPlugCondDensJoint2.R |only
R/NMixPlugCondDensJoint2.default.R |only
R/NMixPlugCondDensMarg.NMixMCMC.R |only
R/NMixPlugCondDensMarg.R |only
R/NMixPlugCondDensMarg.default.R |only
R/NMixPlugDensJoint2.NMixMCMC.R |only
R/NMixPlugDensJoint2.R |only
R/NMixPlugDensJoint2.default.R |only
R/NMixPlugDensMarg.NMixMCMC.R |only
R/NMixPlugDensMarg.R |only
R/NMixPlugDensMarg.default.R |only
R/NMixPredCDFMarg.NMixMCMC.R |only
R/NMixPredCDFMarg.R |only
R/NMixPredCDFMarg.default.R |only
R/NMixPredCondDensJoint2.NMixMCMC.R |only
R/NMixPredCondDensJoint2.R |only
R/NMixPredCondDensJoint2.default.R |only
R/NMixPredCondDensMarg.NMixMCMC.R |only
R/NMixPredCondDensMarg.R |only
R/NMixPredCondDensMarg.default.R |only
R/NMixPredDensJoint2.default.R | 5 +-
R/NMixPredDensMarg.default.R | 3 +
R/NMixSummComp.R |only
R/Y2T.NMixPredCDFMarg.R |only
R/Y2T.NMixPredDensMarg.R |only
R/Y2T.R |only
R/autolayout.R |only
R/plot.NMixPlugCondDensJoint2.R |only
R/plot.NMixPlugCondDensMarg.R |only
R/plot.NMixPlugDensJoint2.R |only
R/plot.NMixPlugDensMarg.R |only
R/plot.NMixPredCDFMarg.R |only
R/plot.NMixPredCondDensJoint2.R |only
R/plot.NMixPredCondDensMarg.R |only
R/plot.NMixPredDensJoint2.R | 70 ++++++++++++++++++++++++++----------
R/plot.NMixPredDensMarg.R | 67 ++++++++++++++++++++++------------
R/print.NMixMCMC.R | 19 +++++++--
R/print.NMixMCMClist.R | 49 +++++++++++++++++++------
R/zzz.R | 6 ++-
inst/CITATION |only
inst/doc/Faithful.pdf |binary
inst/doc/Galaxy.pdf |binary
inst/doc/Tandmob.pdf |binary
inst/doc/index.html | 54 +++++++++++++++++++++++++++
man/NMixChainsDerived.Rd |only
man/NMixClust.Rd |only
man/NMixMCMC.Rd | 15 ++++++-
man/NMixPlugCondDensJoint2.Rd |only
man/NMixPlugCondDensMarg.Rd |only
man/NMixPlugDensJoint2.Rd |only
man/NMixPlugDensMarg.Rd |only
man/NMixPredCDFMarg.Rd |only
man/NMixPredCondDensJoint2.Rd |only
man/NMixPredCondDensMarg.Rd |only
man/NMixPredDensJoint2.Rd | 9 +++-
man/NMixPredDensMarg.Rd | 3 +
man/NMixSummComp.Rd |only
man/Y2T.Rd |only
man/autolayout.Rd |only
man/plot.NMixPlugCondDensJoint2.Rd |only
man/plot.NMixPlugCondDensMarg.Rd |only
man/plot.NMixPlugDensJoint2.Rd |only
man/plot.NMixPlugDensMarg.Rd |only
man/plot.NMixPredCDFMarg.Rd |only
man/plot.NMixPredCondDensJoint2.Rd |only
man/plot.NMixPredCondDensMarg.Rd |only
man/plot.NMixPredDensJoint2.Rd | 18 ++++++---
man/plot.NMixPredDensMarg.Rd | 9 +++-
src/NMix_ChainsDerived.cpp |only
src/NMix_ChainsDerived.h |only
src/NMix_PredCDFMarg.cpp |only
src/NMix_PredCDFMarg.h |only
src/NMix_PredCondDensJoint2.cpp |only
src/NMix_PredCondDensJoint2.h |only
src/NMix_PredCondDensMarg.cpp |only
src/NMix_PredCondDensMarg.h |only
src/NMix_PredDensMarg.cpp | 2 -
82 files changed, 254 insertions(+), 85 deletions(-)
Path: /cran/updated | permanent link
Author: Josh Buckner
Diff between gputools versions 0.1-0 dated 2009-04-19 and 0.1-1 dated 2009-06-25
More information about gputools at CRAN
Title: A few GPU enabled functions
Description: This package provides R interfaces to a handful of common
statistical algorithms. These algorithms are implemented in
parallel using a mixture of nVidia's CUDA langauge and CUBLAS
library. On a computer equiped with an nVidia GPU some of
these functions may be substantially more efficient than native
R routines.
gputools-0.1-0/gputools/src/qrls.cu |only
gputools-0.1-0/gputools/src/qrls.h |only
gputools-0.1-1/gputools/DESCRIPTION | 28 +-
gputools-0.1-1/gputools/NAMESPACE | 5
gputools-0.1-1/gputools/R/gpuGranger.R.in | 49 ++--
gputools-0.1-1/gputools/R/gpuMi.R.in |only
gputools-0.1-1/gputools/R/gpuQr.R.in |only
gputools-0.1-1/gputools/R/gpuSvm.R.in |only
gputools-0.1-1/gputools/configure | 9
gputools-0.1-1/gputools/configure.ac | 3
gputools-0.1-1/gputools/man/getAucEstimate.Rd |only
gputools-0.1-1/gputools/man/gpuGranger.Rd | 47 +++-
gputools-0.1-1/gputools/man/gpuMi.Rd |only
gputools-0.1-1/gputools/man/gpuQr.Rd |only
gputools-0.1-1/gputools/man/gpuSolve.Rd |only
gputools-0.1-1/gputools/man/gpuSvmPredict.Rd |only
gputools-0.1-1/gputools/man/gpuSvmTrain.Rd |only
gputools-0.1-1/gputools/src/Makefile.in | 4
gputools-0.1-1/gputools/src/classification.cu |only
gputools-0.1-1/gputools/src/classification.h |only
gputools-0.1-1/gputools/src/correlation.cu | 64 +++++-
gputools-0.1-1/gputools/src/cuseful.cu | 24 ++
gputools-0.1-1/gputools/src/cuseful.h | 2
gputools-0.1-1/gputools/src/granger.cu | 268 ++++++++++++++++++++------
gputools-0.1-1/gputools/src/granger.h | 6
gputools-0.1-1/gputools/src/lr.cu | 4
gputools-0.1-1/gputools/src/mi.cu |only
gputools-0.1-1/gputools/src/mi.h |only
gputools-0.1-1/gputools/src/qrdecomp.cu |only
gputools-0.1-1/gputools/src/qrdecomp.h |only
gputools-0.1-1/gputools/src/rinterface.cu | 142 +++++++++++++
gputools-0.1-1/gputools/src/rinterface.h | 34 +++
gputools-0.1-1/gputools/src/sort.cu |only
gputools-0.1-1/gputools/src/sort.h |only
34 files changed, 553 insertions(+), 136 deletions(-)
Path: /cran/updated | permanent link
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.0.0 dated 2009-06-24 and 2.9.0.1 dated 2009-06-25
More information about epicalc at CRAN
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 +++---
R/epicalc.R | 71 ++++++++++++++++++++++++++++++++++++++++++++++++++++++
man/auc.rd |only
man/lagVar.rd |only
man/markVisits.rd |only
5 files changed, 75 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Author: Mark Stevenson
Diff between epiR versions 0.9-17 dated 2009-06-02 and 0.9-18 dated 2009-06-25
More information about epiR at CRAN
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains
functions for directly and indirectly adjusting measures of
disease frequency, quantifying measures of association on the
basis of single or multiple strata of count data presented in a
contingency table, and computing confidence intervals around
incidence risk and incidence rate estimates. Miscellaneous
functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 8
R/epi.2by2.R | 622 +++--
R/zzz.R | 6
doc/epiR.pdf | 6312 ++++++++++++++++++++++++++++----------------------------
man/epi.2by2.Rd | 42
5 files changed, 3549 insertions(+), 3441 deletions(-)
Path: /cran/updated | permanent link
Author: Karline Soetaert
Diff between deSolve versions 1.2-3 dated 2009-01-16 and 1.3 dated 2009-06-25
More information about deSolve at CRAN
Title: General solvers for initial value problems of ordinary
differential equations (ODE), partial differential equations
(PDE) and differential algebraic equations (DAE)
Description: Functions that solve initial value problems of a system of
first-order ordinary differential equations (ODE), of partial
differential equations (PDE) and of differential algebraic
equations (DAE). The functions provide an interface to the
FORTRAN functions lsoda, lsodar, lsode, lsodes of the ODEPACK
collection, to the FORTRAN functions dvode and daspk and a
C-implementation of solvers of the Runge-Kutta family with
fixed or variable time steps. The package contains routines
designed for solving ODEs resulting from 1-D, 2-D and 3-D
partial differential equations (PDE) that have been converted
to ODEs by numerical differencing.
deSolve-1.2-3/deSolve/R/densout.R |only
deSolve-1.2-3/deSolve/R/rkAuto.R |only
deSolve-1.2-3/deSolve/R/rkFixed.R |only
deSolve-1.2-3/deSolve/inst/svnversion |only
deSolve-1.2-3/deSolve/man/rkInternal.Rd |only
deSolve-1.2-3/deSolve/src/dbanpre.f |only
deSolve-1.3/deSolve/DESCRIPTION | 40
deSolve-1.3/deSolve/NAMESPACE | 6
deSolve-1.3/deSolve/R/Aquaphy.R | 25
deSolve-1.3/deSolve/R/ccl4model.R | 13
deSolve-1.3/deSolve/R/daspk.R | 676 +++---
deSolve-1.3/deSolve/R/diagnostics.R |only
deSolve-1.3/deSolve/R/euler.R |only
deSolve-1.3/deSolve/R/lsoda.R | 481 ++--
deSolve-1.3/deSolve/R/lsodar.R | 531 ++---
deSolve-1.3/deSolve/R/lsode.R | 228 --
deSolve-1.3/deSolve/R/lsodes.R | 636 +++---
deSolve-1.3/deSolve/R/ode.R | 253 +-
deSolve-1.3/deSolve/R/printmessage.R |only
deSolve-1.3/deSolve/R/rk.R | 288 +-
deSolve-1.3/deSolve/R/rk4.R | 132 +
deSolve-1.3/deSolve/R/rkMethod.R | 21
deSolve-1.3/deSolve/R/vode.R | 536 ++---
deSolve-1.3/deSolve/demo/00Index | 1
deSolve-1.3/deSolve/demo/odedim.R |only
deSolve-1.3/deSolve/demo/rk_solvers.R | 6
deSolve-1.3/deSolve/inst/doc/compiledCode.Rnw | 89
deSolve-1.3/deSolve/inst/doc/compiledCode.pdf | 2065 +++++++++++----------
deSolve-1.3/deSolve/inst/doc/deSolve.Rnw |only
deSolve-1.3/deSolve/inst/doc/deSolve.pdf |only
deSolve-1.3/deSolve/inst/doc/integration.bib |only
deSolve-1.3/deSolve/inst/examples/examples_paper.R | 2
deSolve-1.3/deSolve/inst/wishlist.txt |only
deSolve-1.3/deSolve/man/daspk.Rd | 79
deSolve-1.3/deSolve/man/deSolve.Rd | 65
deSolve-1.3/deSolve/man/diagnostics.Rd |only
deSolve-1.3/deSolve/man/lsoda.Rd | 88
deSolve-1.3/deSolve/man/lsodar.Rd | 51
deSolve-1.3/deSolve/man/lsode.Rd | 59
deSolve-1.3/deSolve/man/lsodes.Rd | 63
deSolve-1.3/deSolve/man/ode.1D.Rd | 21
deSolve-1.3/deSolve/man/ode.2D.Rd | 88
deSolve-1.3/deSolve/man/ode.3D.Rd |only
deSolve-1.3/deSolve/man/ode.Rd | 28
deSolve-1.3/deSolve/man/ode.band.Rd | 17
deSolve-1.3/deSolve/man/rk.Rd | 212 +-
deSolve-1.3/deSolve/man/rk4.Rd | 165 +
deSolve-1.3/deSolve/man/rkMethod.Rd | 75
deSolve-1.3/deSolve/man/vode.Rd | 52
deSolve-1.3/deSolve/src/R_init_deSolve.c | 3
deSolve-1.3/deSolve/src/call_daspk.c | 28
deSolve-1.3/deSolve/src/call_dvode.c | 13
deSolve-1.3/deSolve/src/call_euler.c |only
deSolve-1.3/deSolve/src/call_lsoda.c | 72
deSolve-1.3/deSolve/src/call_rk4.c |only
deSolve-1.3/deSolve/src/call_rkAuto.c |only
deSolve-1.3/deSolve/src/call_rkFixed.c |only
deSolve-1.3/deSolve/src/ddaspk.f | 4
deSolve-1.3/deSolve/src/deSolve.h | 2
deSolve-1.3/deSolve/src/rk_util.c |only
deSolve-1.3/deSolve/src/rk_util.h |only
61 files changed, 3964 insertions(+), 3250 deletions(-)
Path: /cran/updated | permanent link
Author: Paul Murrell
Title: Comparing Objects for Differences
Description: Functions for comparing vectors and data frames.
Diff between compare versions 0.2-1 dated 2009-01-23 and 0.2-2 dated 2009-06-25
DESCRIPTION | 18 ++++++++++-------- NEWS | 32 ++++++++++++++++++++++++++++++++ R/comment.R | 9 +++++++-- R/file.R | 2 +- R/same.R | 27 ++++++++++++++++++++------- inst/doc/compare-intro.pdf |binary inst/doc/fundamentals.pdf |binary 7 files changed, 70 insertions(+), 18 deletions(-)
More information about compare at CRAN
Path: /cran/updated | permanent link
Author: Jake Bowers
Diff between RItools versions 0.1-6 dated 2009-05-08 and 0.1-7 dated 2009-06-25
More information about RItools at CRAN
Title: Randomization inference tools
Description: Tools for randomization inference.
DESCRIPTION | 8 ++++----
R/xtable.xbal.R | 20 ++++++++++++++++----
man/xtable.xbal.Rd | 2 +-
3 files changed, 21 insertions(+), 9 deletions(-)
Path: /cran/updated | permanent link
More information about HWEBayes at CRAN
Path: /cran/new | permanent link
Author: Paul Gilbert
Diff between CDNmoney versions 2007.6-1 dated 2007-06-11 and 2009.3-1 dated 2009-06-25
More information about CDNmoney at CRAN
Title: Components of Canadian Monetary and Credit Aggregates
Description: Components of Canadian Credit Aggregates and Monetary
Aggregates with continuity adjustments.
CDNmoney-2007.6-1/CDNmoney/CDNmoney-manual.pdf |only
CDNmoney-2007.6-1/CDNmoney/INDEX |only
CDNmoney-2007.6-1/CDNmoney/help |only
CDNmoney-2009.3-1/CDNmoney/DESCRIPTION | 13
CDNmoney-2009.3-1/CDNmoney/NEWS |only
CDNmoney-2009.3-1/CDNmoney/Rplots.pdf |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianCreditData.R | 408 +--
CDNmoney-2009.3-1/CDNmoney/data/CanadianCreditData.asof.6Mar2009.R |only
CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.R | 1227 ++++++----
CDNmoney-2009.3-1/CDNmoney/data/CanadianMoneyData.asof.6Mar2009.R |only
CDNmoney-2009.3-1/CDNmoney/inst/doc/CDNmoney.pdf |binary
CDNmoney-2009.3-1/CDNmoney/man/CanadianCreditData.Rd | 44
CDNmoney-2009.3-1/CDNmoney/man/CanadianMoneyData.Rd | 178 -
13 files changed, 1130 insertions(+), 740 deletions(-)
Path: /cran/updated | permanent link
Author: Jae H. Kim
Title: Variance Ratio tests and spectral shape tests for Weak-form
Market Efficiency
Description: A collection of variance ratio and spectral shapte tests
Diff between vrtest versions 0.93 dated 2009-05-08 and 0.94 dated 2009-06-24
DESCRIPTION | 10 +++++----- man/vrtest-package.Rd | 6 +++--- 2 files changed, 8 insertions(+), 8 deletions(-)
More information about vrtest at CRAN
Path: /cran/updated | permanent link
Author: Jeff Hallman
Diff between tis versions 1.5 dated 2009-01-03 and 1.6 dated 2009-06-24
More information about tis at CRAN
Title: Time Indexes and Time Indexed Series
Description: Functions and S3 classes for time indexes and time indexed
series, which are compatible with FAME frequencies.
DESCRIPTION | 23 +++--
NAMESPACE | 6 -
NEWS | 6 +
R/convenientTi.R | 6 -
R/fortify.tis.R |only
R/holidays.R | 201 ++++++++++++++++++++++++++++++++++++++++--------
R/nber.R | 6 -
R/nberShade.ggplot.R |only
R/ti.R | 2
R/tisPlot.R | 2
cleanup | 2
man/cbind.tis.Rd | 2
man/fortify.tis.Rd |only
man/holidays.Rd | 26 ++++--
man/nberShade.Rd | 16 +++
man/nberShade.ggplot.Rd |only
man/scatterPlot.Rd | 2
17 files changed, 236 insertions(+), 64 deletions(-)
Path: /cran/updated | permanent link
Author: Brian Lee Yung Rowe
Title: Provides various portfolio optimization strategies including
random matrix theory and shrinkage estimators
Description: Portfolio optimization typically requires an estimate of a
covariance matrix of asset returns. There are many approaches
for constructing such a covariance matrix, some using the
sample covariance matrix as a starting point. This package
provides implementations for two such methods: random matrix
theory and shrinkage estimation. Each method attempts to clean
or remove noise related to the sampling process from the sample
covariance matrix.
Diff between tawny versions 1.0 dated 2009-04-15 and 1.1.0 dated 2009-06-24
DESCRIPTION | 12 +- R/divergence.R | 51 ++++++++++- R/filter.R |only R/framework.R | 204 ++------------------------------------------- R/random_matrix.R | 52 ++++++----- R/shrinkage.R | 49 +++++++--- R/util.R |only data/sp500.subset.RData |binary man/cov.shrink.Rd | 13 ++ man/divergence.Rd | 11 +- man/filter.RMT.Rd | 23 +++-- man/getPortfolioReturns.Rd | 2 man/optimizePortfolio.Rd | 22 ++++ man/plotPerformance.Rd | 2 man/tawny-package.Rd | 8 - 15 files changed, 194 insertions(+), 255 deletions(-)
More information about tawny at CRAN
Path: /cran/updated | permanent link
Author: Andrew O. Finley
Diff between spBayes versions 0.1-2 dated 2009-03-24 and 0.1-3 dated 2009-06-24
More information about spBayes at CRAN
Title: Univariate and Multivariate Spatial Modeling
Description: spBayes fits univariate and multivariate models with
Markov chain Monte Carlo (MCMC).
DESCRIPTION | 8 +--
R/spGLM.R | 20 ++++++---
R/spLM.R | 20 ++++++---
R/spMvGLM.R | 22 +++++++---
R/spMvLM.R | 25 ++++++++---
inst/doc/spBayes-vignette.pdf |binary
man/spGLM.Rd | 92 ++++++++++++++++++++++++++++++++++++------
man/spLM.Rd | 5 +-
man/spMvGLM.Rd | 20 ++++-----
man/spMvLM.Rd | 33 +++++++--------
man/spPredict.Rd | 12 +++--
src/spMvGLM.cpp | 2
src/spMvLM.cpp | 8 +--
13 files changed, 187 insertions(+), 80 deletions(-)
Path: /cran/updated | permanent link
Author: Josef Leydold and Wolfgang H\"ormann
Title: R interface to the UNU.RAN random variate generators
Description: Interface to the UNU.RAN library for Universal Non-Uniform
RANdom variate generators
Diff between Runuran versions 0.9.0 dated 2009-02-26 and 0.10.0 dated 2009-06-24
Runuran-0.10.0/Runuran/DESCRIPTION | 14 Runuran-0.10.0/Runuran/NAMESPACE | 2 Runuran-0.10.0/Runuran/NEWS | 11 Runuran-0.10.0/Runuran/R/Runuran.R | 86 Runuran-0.10.0/Runuran/inst/doc/Runuran.pdf | 3141 +++++----- Runuran-0.10.0/Runuran/inst/doc/src/advanced.Rnw | 8 Runuran-0.10.0/Runuran/inst/doc/src/pitfalls.Rnw | 53 Runuran-0.10.0/Runuran/inst/doc/src/universal.Rnw | 6 Runuran-0.10.0/Runuran/inst/doc/src/version.tex | 2 Runuran-0.10.0/Runuran/man/Runuran-package.Rd | 17 Runuran-0.10.0/Runuran/man/dau.new.Rd | 2 Runuran-0.10.0/Runuran/man/dgt.new.Rd | 3 Runuran-0.10.0/Runuran/man/unuran-class.Rd | 18 Runuran-0.10.0/Runuran/man/unuran.packed-methods.Rd |only Runuran-0.10.0/Runuran/man/uq.Rd | 41 Runuran-0.10.0/Runuran/src/Makevars.in | 4 Runuran-0.10.0/Runuran/src/Runuran.c | 402 + Runuran-0.10.0/Runuran/src/Runuran.h | 40 Runuran-0.10.0/Runuran/src/Runuran_pinv.c |only Runuran-0.10.0/Runuran/src/Runuran_source.h |only Runuran-0.10.0/Runuran/src/unuran-src/distr/cont.c | 26 Runuran-0.10.0/Runuran/src/unuran-src/methods/dgt.c | 26 Runuran-0.10.0/Runuran/src/unuran-src/methods/dgt.h | 1 Runuran-0.10.0/Runuran/src/unuran-src/methods/pinv.c | 3 Runuran-0.10.0/Runuran/src/unuran-src/methods/pinv_info.ch | 2 Runuran-0.10.0/Runuran/src/unuran-src/methods/pinv_init.ch | 47 Runuran-0.10.0/Runuran/src/unuran-src/methods/pinv_newton.ch | 26 Runuran-0.10.0/Runuran/src/unuran-src/methods/pinv_prep.ch | 4 Runuran-0.10.0/Runuran/src/unuran-src/methods/x_gen.c | 3 Runuran-0.10.0/Runuran/src/unuran-src/unuran.h | 1 Runuran-0.10.0/Runuran/src/unuran-src/utils/error.c | 2 Runuran-0.10.0/Runuran/src/unuran-src/utils/lobatto.c | 29 Runuran-0.10.0/Runuran/src/unuran-src/utils/lobatto_source.h | 2 Runuran-0.10.0/Runuran/tests/test_advanced.R | 4 Runuran-0.10.0/Runuran/tests/test_deprecated.R | 4 Runuran-0.10.0/Runuran/tests/test_distributions_cont.R | 4 Runuran-0.10.0/Runuran/tests/test_distributions_discr.R | 4 Runuran-0.10.0/Runuran/tests/test_packed.R |only Runuran-0.10.0/Runuran/tests/test_routines.R | 4 Runuran-0.10.0/Runuran/tests/test_universal.R | 4 Runuran-0.10.0/Runuran/tests/test_unuran.R | 68 Runuran-0.9.0/Runuran/src/unuran-src/distributions/obsolete_gen |only 42 files changed, 2412 insertions(+), 1702 deletions(-)
More information about Runuran at CRAN
Path: /cran/updated | permanent link
Author: Originally Michael Lapsley, from Oct 2002 Brian Ripley
Title: ODBC Database Access
Description: An ODBC database interface
Diff between RODBC versions 1.2-5 dated 2009-01-21 and 1.2-6 dated 2009-06-24
RODBC-1.2-5/RODBC/README.orig |only RODBC-1.2-5/RODBC/man/RODBC.Rd |only RODBC-1.2-5/RODBC/man/RODBCtables.Rd |only RODBC-1.2-6/RODBC/ChangeLog | 53 +++- RODBC-1.2-6/RODBC/DESCRIPTION | 15 - RODBC-1.2-6/RODBC/INSTALL |only RODBC-1.2-6/RODBC/R/RODBC.R | 42 ++- RODBC-1.2-6/RODBC/R/sql.R | 122 ++++++---- RODBC-1.2-6/RODBC/R/win.R | 47 ---- RODBC-1.2-6/RODBC/README | 130 +++-------- RODBC-1.2-6/RODBC/inst/README | 130 +++-------- RODBC-1.2-6/RODBC/inst/po |only RODBC-1.2-6/RODBC/inst/tests.R | 54 +--- RODBC-1.2-6/RODBC/man/RODBC-internal.Rd | 5 RODBC-1.2-6/RODBC/man/RODBC-package.Rd |only RODBC-1.2-6/RODBC/man/odbc.Rd | 56 ++-- RODBC-1.2-6/RODBC/man/odbcClose.Rd | 7 RODBC-1.2-6/RODBC/man/odbcConnect.Rd | 69 +++-- RODBC-1.2-6/RODBC/man/odbcDataSources.Rd | 22 + RODBC-1.2-6/RODBC/man/odbcErrors.Rd | 2 RODBC-1.2-6/RODBC/man/odbcGetInfo.Rd | 16 - RODBC-1.2-6/RODBC/man/odbcSetAutoCommit.Rd | 10 RODBC-1.2-6/RODBC/man/setSqlTypeInfo.Rd | 9 RODBC-1.2-6/RODBC/man/sqlColumns.Rd |only RODBC-1.2-6/RODBC/man/sqlCopy.Rd | 22 + RODBC-1.2-6/RODBC/man/sqlDrop.Rd |only RODBC-1.2-6/RODBC/man/sqlFetch.Rd | 36 +-- RODBC-1.2-6/RODBC/man/sqlQuery.Rd | 76 +++--- RODBC-1.2-6/RODBC/man/sqlSave.Rd | 78 +++--- RODBC-1.2-6/RODBC/man/sqlTables.Rd | 69 +++++ RODBC-1.2-6/RODBC/man/sqlTypeInfo.Rd | 32 +- RODBC-1.2-6/RODBC/po/R-RODBC.pot | 13 - RODBC-1.2-6/RODBC/po/R-en@quot.po |only RODBC-1.2-6/RODBC/po/RODBC.pot | 64 ++--- RODBC-1.2-6/RODBC/po/en@quot.po |only RODBC-1.2-6/RODBC/src/RODBC.c | 334 ++++++++++++++++++----------- RODBC-1.2-6/RODBC/tests |only 37 files changed, 844 insertions(+), 669 deletions(-)
More information about RODBC at CRAN
Path: /cran/updated | permanent link
More information about RImageJ at CRAN
Path: /cran/new | permanent link
Author: Charles J. Geyer
Diff between rcdd versions 1.1-1 dated 2008-09-01 and 1.1-2 dated 2009-06-24
More information about rcdd at CRAN
Title: rcdd (Computational Geometry)
Description: R interface to (some of) cddlib, see
http://www.ifor.math.ethz.ch/~fukuda/cdd_home/cdd.html converts
back and forth between two representations of a convex
polytope: as solution of a set of linear equalities and
inequalities and as convex hull of set of points and rays, also
does linear programming and redundant generator elimination
(for example, convex hull in n dimensions), all with exact
infinite-precision rational arithmetic.
rcdd-1.1-1/rcdd/inst/doc/.build.timestamp |only
rcdd-1.1-2/rcdd/CHANGES | 3 +++
rcdd-1.1-2/rcdd/DESCRIPTION | 30 ++++++++++++++++--------------
rcdd-1.1-2/rcdd/inst/doc/vinny.Rnw | 13 ++++++++++++-
rcdd-1.1-2/rcdd/inst/doc/vinny.pdf |binary
rcdd-1.1-2/rcdd/inst/doc/vinny.tex | 5 ++++-
6 files changed, 35 insertions(+), 16 deletions(-)
Path: /cran/updated | permanent link
Author: Graham Williams
Diff between rattle versions 2.4.54 dated 2009-03-24 and 2.4.79 dated 2009-06-24
More information about rattle at CRAN
Title: A graphical user interface for data mining in R using GTK
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
rattle-2.4.54/rattle/man/listRPartRules.Rd |only
rattle-2.4.79/rattle/CITATION | 4
rattle-2.4.79/rattle/DESCRIPTION | 14
rattle-2.4.79/rattle/NAMESPACE | 4
rattle-2.4.79/rattle/R/data.R | 283 +-
rattle-2.4.79/rattle/R/evaluate.R | 114
rattle-2.4.79/rattle/R/explore.R |only
rattle-2.4.79/rattle/R/hclust.R | 6
rattle-2.4.79/rattle/R/help.R | 32
rattle-2.4.79/rattle/R/log.R | 48
rattle-2.4.79/rattle/R/model.R | 60
rattle-2.4.79/rattle/R/projects.R | 68
rattle-2.4.79/rattle/R/random_forest.R | 12
rattle-2.4.79/rattle/R/rattle.R | 2520 +-------------------
rattle-2.4.79/rattle/R/report.R | 3
rattle-2.4.79/rattle/R/rpart.R | 10
rattle-2.4.79/rattle/R/textview.R | 6
rattle-2.4.79/rattle/R/transform.R | 349 +-
rattle-2.4.79/rattle/R/zzz.R | 56
rattle-2.4.79/rattle/data/audit.RData |binary
rattle-2.4.79/rattle/data/weather.RData |binary
rattle-2.4.79/rattle/data/weatherCanberra.RData |only
rattle-2.4.79/rattle/data/weatherSydney.RData |only
rattle-2.4.79/rattle/inst/arff/weather.arff | 762 +++---
rattle-2.4.79/rattle/inst/arff/weatherCanberra.arff |only
rattle-2.4.79/rattle/inst/arff/weatherSydney.arff |only
rattle-2.4.79/rattle/inst/csv/weather.csv | 723 ++---
rattle-2.4.79/rattle/inst/csv/weatherCanberra.csv |only
rattle-2.4.79/rattle/inst/csv/weatherSydney.csv |only
rattle-2.4.79/rattle/inst/etc/rattle.glade | 2299 ++++++++++--------
rattle-2.4.79/rattle/inst/etc/textviews.xml | 143 -
rattle-2.4.79/rattle/inst/etc/tooltips.xml | 4
rattle-2.4.79/rattle/man/asRules.Rd |only
rattle-2.4.79/rattle/man/asRules.rpart.Rd |only
rattle-2.4.79/rattle/man/drawTreeNodes.Rd | 2
rattle-2.4.79/rattle/man/internal.Rd | 4
rattle-2.4.79/rattle/man/plotRisk.Rd | 5
rattle-2.4.79/rattle/man/weather.Rd | 24
38 files changed, 2957 insertions(+), 4598 deletions(-)
Path: /cran/updated | permanent link
Author: Aaron A. King, Edward L. Ionides, Carles Martinez Breto, Steve
Ellner, Bruce Kendall
Title: Statistical inference for partially observed Markov processes
Description: Inference methods for partially-observed Markov processes
Diff between pomp versions 0.24-5 dated 2009-06-07 and 0.24-7 dated 2009-06-24
pomp-0.24-5/pomp/R/mvnorm.R |only pomp-0.24-7/pomp/DESCRIPTION | 13 +++---- pomp-0.24-7/pomp/NAMESPACE | 1 pomp-0.24-7/pomp/R/nlf-guts.R | 28 --------------- pomp-0.24-7/pomp/inst/ChangeLog | 16 +++++++++ pomp-0.24-7/pomp/inst/doc/advanced_topics_in_pomp.pdf |binary pomp-0.24-7/pomp/inst/doc/intro_to_pomp.pdf |binary pomp-0.24-7/pomp/src/initstate.c | 32 +++++++++++++----- pomp-0.24-7/pomp/src/lookup_table.c | 1 9 files changed, 49 insertions(+), 42 deletions(-)
More information about pomp at CRAN
Path: /cran/updated | permanent link
Author: Graham Williams, Michael Hahsler (arules), Zementis Inc, Hemant
Ishwaran, Udaya B. Kogalur, Rajarshi Guha
Title: Generate PMML for various models
Description: The Predictive Modelling Markup Language (PMML) is a
language for representing models, in an application independent
way. Such models can then be loaded into other applications
supporting PMML, including ADAPA from Zementis, Teradata
Warehouse Miner and IBM's DB2. The package provides a generic
pmml function to generate pmml for an object. Using a S3
generic function the approriate method for the class of the
supplied object is dispatched. The package currently supports
the export of PMML for linear regression, SVMs, rpart
classification trees, randomSurvivalForest forest models, and
kmeans clusters. This package is part of the Rattle toolkit.
Diff between pmml versions 1.2.10 dated 2009-03-09 and 1.2.15 dated 2009-06-24
DESCRIPTION | 37 ++++--- NAMESPACE | 2 R/pmml.R | 246 +++++++++++++++++++++++++++++++++++++++------------ R/pmml.arules.R | 2 R/pmml.lm.R | 29 ++++-- R/pmml.rpart.R | 36 ++++++- man/pmml.Rd | 8 + man/pmml.arules.Rd | 2 man/pmmlCanExport.Rd |only 9 files changed, 277 insertions(+), 85 deletions(-)
More information about pmml at CRAN
Path: /cran/updated | permanent link
Author: Hadley Wickham
Diff between plyr versions 0.1.8 dated 2009-04-21 and 0.1.9 dated 2009-06-24
More information about plyr at CRAN
Title: Tools for splitting, applying and combining data
Description: plyr is a set of tools that solves a common set of
problems: you need to break a big problem down into manageable
pieces, operate on each pieces and then put all the pieces back
together. For example, you might want to fit a model to each
spatial location or time point in your study, summarise data by
panels or collapse high-dimensional arrays to simpler summary
statistics.
DESCRIPTION | 6 +++---
NEWS | 8 ++++++++
R/helper-summarise.r |only
R/quote.r | 20 ++++++++++++++++++--
R/rbind.r | 10 ++++++----
R/simplify-vector.r | 3 ++-
R/split-data-frame.r | 2 +-
man/as-quoted-3f.rd | 3 +++
man/rbind-fill-di.rd | 11 ++++++++++-
man/summarise-n4.rd |only
10 files changed, 51 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
More information about plus at CRAN
Path: /cran/new | permanent link
Author: Thomas A. Gerds
Title: Prediction Error Curves for Survival Models
Description: Validation of predicted surival probabilities using
inverse weighting and resampling.
Diff between pec versions 1.1.0 dated 2009-04-15 and 1.1.1 dated 2009-06-24
DESCRIPTION | 6 +++--- man/R2crps.Rd | 2 ++ man/ipcw.Rd | 5 +++-- src/pec.c | 4 ++-- 4 files changed, 10 insertions(+), 7 deletions(-)
More information about pec at CRAN
Path: /cran/updated | permanent link
Author: Andrew Gelman
Diff between mi versions 0.08-02 dated 2009-06-19 and 0.08-03 dated 2009-06-24
More information about mi at CRAN
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 12 ++++++++++++
DESCRIPTION | 8 ++++----
R/mi.R | 10 +++++-----
R/mi.binary.R | 2 +-
R/mi.continuous.R | 2 +-
R/mi.count.R | 2 +-
R/mi.pmm.R | 2 +-
7 files changed, 25 insertions(+), 13 deletions(-)
Path: /cran/updated | permanent link
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer
J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko,
Stéphane Dray, David Forrest, Patrick Giraudoux, Duncan
Golicher, Virgilio Gómez Rubio, Patrick Hausmann, Thomas
Jagger, Sebastian P. Luque, Don MacQueen, Andrew Niccolai and
Tom Short
Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data,
in particular ESRI shapefiles; C code used from shapelib. It
includes binary access to GSHHS shoreline files. The package
also provides interface wrappers for exchanging spatial objects
with packages such as PBSmapping, spatstat, maps, RArcInfo,
Stata tmap, WinBUGS, Mondrian, and others.
Diff between maptools versions 0.7-23 dated 2009-05-27 and 0.7-25 dated 2009-06-24
ChangeLog | 10 ++++++++++ DESCRIPTION | 8 ++++---- R/SpatialPolys-methods.R | 12 +++++++++--- inst/ChangeLog | 10 ++++++++++ 4 files changed, 33 insertions(+), 7 deletions(-)
More information about maptools at CRAN
Path: /cran/updated | permanent link
Author: Deepayan Sarkar
Diff between latticeExtra versions 0.5-4 dated 2008-11-02 and 0.6-1 dated 2009-06-24
More information about latticeExtra at CRAN
Title: Extra Graphical Utilities Based on Lattice
Description: Extra graphical utilities based on lattice
DESCRIPTION | 11 -
NAMESPACE | 15 +
R/c.trellis.R | 342 ++++++++++++++++++++++-----------------
R/doubleYScale.R |only
R/layer.R | 425 ++++++++++++++-----------------------------------
R/marginal.plot.R | 317 ++++++++++++++++++------------------
R/panel.3dmisc.R | 2
R/panel.lmlineq.R |only
R/segplot.R | 17 +
R/tileplot.R | 228 +++++++++++++-------------
data/EastAuClimate.txt |only
inst/NEWS | 22 ++
man/EastAuClimate.Rd |only
man/as.layer.Rd | 81 +++------
man/c.trellis.Rd | 75 +++++---
man/doubleYScale.Rd |only
man/marginal.plot.Rd | 25 +-
man/panel.lmlineq.Rd |only
man/panel.segplot.Rd | 12 -
19 files changed, 752 insertions(+), 820 deletions(-)
Path: /cran/updated | permanent link
Author: Christina Stahl and David Meyer
Title: Knowledge Space Theory
Description: Knowledge Space Theory is a set-theoretical framework,
which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The kst-package
provides basic functionalities to generate, handle, and
manipulate knowledge structures and knowledge spaces.
Diff between kst versions 0.1.8 dated 2009-01-09 and 0.1-9 dated 2009-06-24
DESCRIPTION | 31 +++++++++++++++++-------------- R/reduction.kstructure.R | 2 +- inst/doc/kst.Rnw | 5 ----- inst/doc/kst.pdf |binary man/plot.Rd | 8 -------- 5 files changed, 18 insertions(+), 28 deletions(-)
More information about kst at CRAN
Path: /cran/updated | permanent link
Author: Tarn Duong
Diff between ks versions 1.6.3 dated 2009-04-04 and 1.6.5 dated 2009-06-24
More information about ks at CRAN
Title: Kernel smoothing
Description: Kernel density estimators and kernel discriminant analysis
for multivariate data
ks-1.6.3/ks/R-future |only
ks-1.6.5/ks/DESCRIPTION | 8 +--
ks-1.6.5/ks/R/binning.R | 67 ++++++++++++++++++--------------
ks-1.6.5/ks/R/kda.R | 26 +++++++-----
ks-1.6.5/ks/R/kdde.R | 12 +++--
ks-1.6.5/ks/R/kde.R | 88 +++++++++++++++++++++++++------------------
ks-1.6.5/ks/R/mise.R | 4 -
ks-1.6.5/ks/R/normal.R | 35 ++++++++++-------
ks-1.6.5/ks/R/selector.R | 2
ks-1.6.5/ks/README | 13 +++++-
ks-1.6.5/ks/inst/doc/kde.pdf |binary
ks-1.6.5/ks/man/binning.Rd | 3 -
ks-1.6.5/ks/man/drvkde.Rd | 4 -
ks-1.6.5/ks/man/kda.kde.Rd | 10 +++-
ks-1.6.5/ks/man/kde.Rd | 8 ++-
ks-1.6.5/ks/src/linbin.f | 15 +++----
ks-1.6.5/ks/src/linbin2D.f | 12 ++---
ks-1.6.5/ks/src/linbin3D.f | 20 ++++-----
ks-1.6.5/ks/src/linbin4D.f | 76 ++++++++++++++++++++++---------------
19 files changed, 239 insertions(+), 164 deletions(-)
Path: /cran/updated | permanent link
Author: Christian Roever, Nils Raabe, Karsten Luebke, Uwe Ligges, Gero
Szepannek, Marc Zentgraf
Title: Classification and visualization
Description: Miscellaneous functions for classification and
visualization developed at the Fakultaet Statistik, Technische
Universitaet Dortmund
Diff between klaR versions 0.5-8 dated 2009-01-09 and 0.5-9 dated 2009-06-24
DESCRIPTION | 33 +++++++++++++++++++-------------- R/partimat.R | 5 +++-- 2 files changed, 22 insertions(+), 16 deletions(-)
More information about klaR at CRAN
Path: /cran/updated | permanent link
More information about GOFSN at CRAN
Path: /cran/new | permanent link
More information about glmulti at CRAN
Path: /cran/new | permanent link
Author: Achim Zeileis, Bettina Gruen
Title: Automatic Generation of Standardized Exams for Large-Lecture
Courses
Description: Sweave-based automatic generation of exams with
multiple-choice questions and arithmetic problems.
Diff between exams versions 1.0-0 dated 2009-02-20 and 1.0-1 dated 2009-06-24
DESCRIPTION | 13 ++++++++----- NEWS | 8 ++++++++ inst/doc/exams.Rnw | 2 +- inst/doc/exams.pdf |binary inst/exercises/anova.Rnw | 2 +- man/exams.Rd | 14 +++++++------- 6 files changed, 25 insertions(+), 14 deletions(-)
More information about exams at CRAN
Path: /cran/updated | permanent link
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.8.1.1 dated 2009-02-15 and 2.9.0.0 dated 2009-06-24
More information about epicalc at CRAN
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 26 ++++++++++++++------------
R/epicalc.R | 1 +
2 files changed, 15 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
More information about endogMNP at CRAN
Path: /cran/new | permanent link
More information about Daim at CRAN
Path: /cran/new | permanent link
More information about dirmult at CRAN
Path: /cran/new | permanent link
More information about digeR at CRAN
Path: /cran/new | permanent link
Author: Roger D. Peng
Diff between cacher versions 1.0 dated 2008-12-21 and 1.1 dated 2009-06-24
More information about cacher at CRAN
Title: Tools for caching and distributing statistical analyses
Description: This package provides tools for caching statistical
analyses in key-value databases which can subsequently be
distributed over the web.
DESCRIPTION | 17 +++++---
NAMESPACE | 6 +++
R/cacheDB.R | 6 ++-
R/utils.R | 8 +++-
R/verify.R | 22 ++++++-----
R/vizcache.R | 103 +++++++++++++++++++++++++++++++++++++++++++---------
TODO | 2 +
inst/doc/cacher.pdf |binary
man/cache.Rd | 13 ++++--
man/code.Rd | 2 -
man/graphcode.Rd |only
man/objectcode.Rd |only
man/package.Rd | 10 ++++-
13 files changed, 146 insertions(+), 43 deletions(-)
Path: /cran/updated | permanent link
Author: Jose Claudio Faria & Clarice Garcia Borges Demetrio
Title: Biplot of Multivariate Data Based on Principal Components
Analysis
Description: Implements biplot (2d and 3d) of multivariate data based
on principal components analysis and diagnostic tools of the
quality of the reduction.
Diff between bpca versions 1.0.2 dated 2008-08-17 and 1.0.3 dated 2009-06-24
bpca-1.0.2/bpca/demo/bpca.lbd2-4.static.3d.R |only bpca-1.0.3/bpca/ChangeLog | 7 ++ bpca-1.0.3/bpca/DESCRIPTION | 31 ++++----- bpca-1.0.3/bpca/R/plot.bpca.2d.R | 31 +++++---- bpca-1.0.3/bpca/R/plot.bpca.3d.R | 82 +++++++++++------------- bpca-1.0.3/bpca/demo/00Index | 28 ++++---- bpca-1.0.3/bpca/demo/bpca.R | 68 +------------------ bpca-1.0.3/bpca/demo/bpca.dinamic.3d.R | 19 ++++- bpca-1.0.3/bpca/demo/bpca.lambda2_4.static.3d.R |only bpca-1.0.3/bpca/demo/bpca.static.2d.R | 8 +- bpca-1.0.3/bpca/demo/bpca.static.3d.R | 10 +- bpca-1.0.3/bpca/demo/comparation.R | 9 +- bpca-1.0.3/bpca/demo/dt.tools.R | 1 bpca-1.0.3/bpca/demo/gge.check.R | 9 +- bpca-1.0.3/bpca/demo/iris.R | 6 + bpca-1.0.3/bpca/demo/iris.var.rd.R | 8 +- bpca-1.0.3/bpca/demo/rock.var.rd.R | 11 ++- bpca-1.0.3/bpca/demo/var.rb.2d.R | 6 + bpca-1.0.3/bpca/demo/var.rb.3d.R | 6 + bpca-1.0.3/bpca/demo/var.rd.2d.R | 6 + bpca-1.0.3/bpca/man/bpca-package.Rd | 20 +++-- bpca-1.0.3/bpca/man/bpca.Rd | 81 +++++++++++++---------- bpca-1.0.3/bpca/man/dt.tools.Rd | 1 bpca-1.0.3/bpca/man/gabriel1971.Rd | 2 bpca-1.0.3/bpca/man/plot.Rd | 38 ++++++----- bpca-1.0.3/bpca/man/qbpca.Rd | 8 +- bpca-1.0.3/bpca/man/summary.Rd | 1 bpca-1.0.3/bpca/man/var.rbf.Rd | 1 bpca-1.0.3/bpca/man/var.rdf.Rd | 7 +- bpca-1.0.3/bpca/pdf |only 30 files changed, 262 insertions(+), 243 deletions(-)
More information about bpca at CRAN
Path: /cran/updated | permanent link
More information about bootRes at CRAN
Path: /cran/new | permanent link
Author: Michael J. Kane and John W. Emerson
Title: Manage massive matrices in R using C++, with support for shared
memory and memory-mapped files.
Description: Use C++ to create, store, access, and manipulate massive
matrices. Matrices may optionally be allocated to shared
memory and/or may use memory-mapped files.
Diff between bigmemory versions 3.8 dated 2009-06-10 and 3.9 dated 2009-06-24
bigmemory-3.8/bigmemory/COPYING |only bigmemory-3.8/bigmemory/NAMESPACE |only bigmemory-3.8/bigmemory/configure |only bigmemory-3.8/bigmemory/include/boost/array.hpp |only bigmemory-3.8/bigmemory/include/boost/cstdint.hpp |only bigmemory-3.8/bigmemory/include/boost/detail |only bigmemory-3.8/bigmemory/include/boost/exception |only bigmemory-3.8/bigmemory/include/boost/interprocess |only bigmemory-3.8/bigmemory/include/boost/io_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/O1_size.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/advance.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/advance_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/alias.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/always.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/and.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/apply.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/apply_wrap.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/arg_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/arithmetic.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/at.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/at_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/O1_size_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/adl_barrier.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/advance_backward.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/advance_forward.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/apply_1st.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/arg_typedef.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/arithmetic_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/arity.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/arity_spec.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/at_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/back_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/basic_bind.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/begin_end_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/clear_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/common_name_wknd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/comparison_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/config |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/contains_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/count_args.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/count_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/empty_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/erase_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/erase_key_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/filter_iter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/find_if_pred.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/fold_impl_body.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/fold_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/fold_pred.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/front_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/full_lambda.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_apply.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_begin.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_key_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_rebind.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_size.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_tag.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/has_type.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/include_preprocessed.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/insert_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/insert_range_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/inserter_algorithm.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/integral_wrapper.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/is_msvc_eti_arg.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/iter_apply.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/iter_fold_if_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/iter_fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/iter_push_front.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/joint_iter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/lambda_arity_param.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/lambda_no_ctps.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/lambda_spec.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/lambda_support.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/largest_int.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/logical_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/msvc_dtw.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/msvc_eti_base.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/msvc_is_class.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/msvc_never_true.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/msvc_type.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/na.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/na_assert.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/na_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/na_spec.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/nested_type_wknd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/nttp_decl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/numeric_cast_utils.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/numeric_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/order_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/overload_names.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/partition_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/pop_back_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/pop_front_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/bcc |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/bcc551 |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/dmc |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/gcc |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/mwcw |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/advance_backward.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/advance_forward.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/and.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/apply.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/apply_wrap.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/basic_bind.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/bind_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/bitor.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/deque.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/divides.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/equal_to.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/full_lambda.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/greater.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/greater_equal.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/inherit.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/iter_fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/lambda_no_ctps.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/less.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/list_c.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/map.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/modulus.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/not_equal_to.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/plus.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/quote.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/reverse_fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/set.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/set_c.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/shift_right.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/template_arity.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/vector.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/preprocessor |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/ptr_to_ref.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/push_back_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/push_front_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/range_c |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/reverse_fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/reverse_fold_impl_body.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/reverse_iter_fold_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/sequence_wrapper.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/shift_op.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/single_element_iter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/size_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/sort_impl.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/static_cast.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/template_arity.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/template_arity_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/test |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/test.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/traits_lambda_spec.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/transform_iter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/type_wrapper.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/unwrap.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/value_wknd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/aux_/yes_no.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/back.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/back_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/begin.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/begin_end.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/begin_end_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/bind_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/bitand.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/bitor.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/bitwise.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/bool_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/clear.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/clear_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/comparison.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/contains.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/contains_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/copy.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/copy_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/count.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/count_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/count_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/deque.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/distance.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/distance_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/divides.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/empty.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/empty_base.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/empty_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/end.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/equal.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/equal_to.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/erase.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/erase_key.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/find.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/find_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/fold.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/for_each.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/front.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/front_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/front_inserter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/greater.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/greater_equal.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/has_key.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/has_key_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/index_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/index_of.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/inherit.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/insert.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/insert_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/insert_range.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/inserter.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/integral_c.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/integral_c_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/is_placeholder.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/is_sequence.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/iter_fold.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/iter_fold_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/iterator_category.hpp |only 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|only bigmemory-3.8/bigmemory/include/boost/mpl/min.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/min_element.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/min_max.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/modulus.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/multiplies.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/multiset |only bigmemory-3.8/bigmemory/include/boost/mpl/next_prior.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/not.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/not_equal_to.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/numeric_cast.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/order.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/pair.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/partition.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/plus.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/pop_front.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/pop_front_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/print.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/push_back.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/push_back_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/push_front_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/quote.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/range_c.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/remove.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/replace.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/replace_if.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/reverse.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/reverse_fold.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/reverse_iter_fold.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/set |only bigmemory-3.8/bigmemory/include/boost/mpl/set.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/set_c.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/shift_right.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/size_t_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/sizeof.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/stable_partition.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/transform.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/transform_view.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/unique.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/upper_bound.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/value_type.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/value_type_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/vector |only bigmemory-3.8/bigmemory/include/boost/mpl/vector.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/void.hpp |only bigmemory-3.8/bigmemory/include/boost/mpl/void_fwd.hpp |only bigmemory-3.8/bigmemory/include/boost/noncopyable.hpp |only bigmemory-3.8/bigmemory/include/boost/numeric |only bigmemory-3.8/bigmemory/include/boost/random |only bigmemory-3.8/bigmemory/include/boost/shared_ptr.hpp |only bigmemory-3.8/bigmemory/include/boost/static_assert.hpp |only bigmemory-3.8/bigmemory/include/boost/throw_exception.hpp |only bigmemory-3.8/bigmemory/include/boost/type_traits |only bigmemory-3.8/bigmemory/include/boost/uuid |only bigmemory-3.8/bigmemory/include/boost/uuid.hpp |only bigmemory-3.8/bigmemory/man/big.sub.matrix.Rd |only bigmemory-3.9/bigmemory/DESCRIPTION | 8 bigmemory-3.9/bigmemory/R/bigmatrix.R | 574 ++++- bigmemory-3.9/bigmemory/R/bigmatrixLib.R | 40 bigmemory-3.9/bigmemory/R/bigmatrixShm.R | 73 bigmemory-3.9/bigmemory/R/utils.R | 4 bigmemory-3.9/bigmemory/configure.Rout | 6 bigmemory-3.9/bigmemory/include/boost/mpl/aux_/preprocessed/no_ttp/list.hpp | 285 -- bigmemory-3.9/bigmemory/man/attach.big.matrix.Rd | 4 bigmemory-3.9/bigmemory/man/big.matrix-class.Rd | 15 bigmemory-3.9/bigmemory/man/big.matrix.Rd | 9 bigmemory-3.9/bigmemory/man/bigmemory-package.Rd | 15 bigmemory-3.9/bigmemory/man/deepcopy.Rd | 13 bigmemory-3.9/bigmemory/man/mwhich.Rd | 5 bigmemory-3.9/bigmemory/src/BigMatrix.cpp | 60 bigmemory-3.9/bigmemory/src/BigMatrix.h | 30 bigmemory-3.9/bigmemory/src/BigMatrixAccessor.hpp | 14 bigmemory-3.9/bigmemory/src/BigMemoryDefines.h | 2 bigmemory-3.9/bigmemory/src/BigMemoryMutex.cpp | 23 bigmemory-3.9/bigmemory/src/BigMemoryMutex.h | 23 bigmemory-3.9/bigmemory/src/CUserMutex.cpp | 2 bigmemory-3.9/bigmemory/src/Cbigmemory.cpp | 1003 +++++++--- bigmemory-3.9/bigmemory/src/CbigmemoryLib.cpp | 31 bigmemory-3.9/bigmemory/src/SharedCounter.cpp | 23 bigmemory-3.9/bigmemory/src/SharedCounter.h | 23 bigmemory-3.9/bigmemory/src/bigmemoryutils.cpp | 23 bigmemory-3.9/bigmemory/src/isna.hpp | 23 bigmemory-3.9/bigmemory/src/util.cpp | 2 bigmemory-3.9/bigmemory/src/util.h | 2 312 files changed, 1569 insertions(+), 766 deletions(-)
More information about bigmemory at CRAN
Path: /cran/updated | permanent link
Author: Jae. H. Kim
Title: Bootstrap Prediction Intervals and Bias-Corrected Forecasting
Description: Bias-Corrected Forecasting and Bootstrap Prediction
Intervals for Autoregressive Time Series
Diff between BootPR versions 0.57 dated 2009-05-04 and 0.58 dated 2009-06-24
DESCRIPTION | 10 +++++----- man/BootAfterBootPI.Rd | 5 ++++- man/BootBC.Rd | 5 ++++- man/BootPR-package.Rd | 6 +++--- man/ShamanStine.PI.Rd | 5 ++++- man/Stine.Shaman.Rd | 6 +++++- 6 files changed, 25 insertions(+), 12 deletions(-)
More information about BootPR at CRAN
Path: /cran/updated | permanent link
Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong,
Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel,
Gangolf Jobb, Christoph Heibl, Daniel Lawson, Vincent Lefort,
Pierre Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander,
Rainer Opgen-Rhein, Korbinian Strimmer, Damien de Vienne
Title: Analyses of Phylogenetics and Evolution
Description: ape provides functions for reading, writing, plotting, and
manipulating phylogenetic trees, analyses of comparative data
in a phylogenetic framework, analyses of diversification and
macroevolution, computing distances from allelic and nucleotide
data, reading nucleotide sequences, and several tools such as
Mantel's test, computation of minimum spanning tree, the
population parameter theta based on various approaches,
nucleotide diversity, generalized skyline plots, estimation of
absolute evolutionary rates and clock-like trees using mean
path lengths, non-parametric rate smoothing and penalized
likelihood. Phylogeny estimation can be done with the NJ,
BIONJ, and ME methods.
Diff between ape versions 2.3 dated 2009-03-30 and 2.3-1 dated 2009-06-24
ape-2.3-1/ape/ChangeLog | 54 ++++++++++++++++ ape-2.3-1/ape/DESCRIPTION | 13 +--- ape-2.3-1/ape/R/CDAM.global.R | 2 ape-2.3-1/ape/R/DNA.R | 15 +++- ape-2.3-1/ape/R/ace.R | 31 ++++----- ape-2.3-1/ape/R/balance.R | 6 - ape-2.3-1/ape/R/birthdeath.R | 8 +- ape-2.3-1/ape/R/branching.times.R | 6 - ape-2.3-1/ape/R/cherry.R | 22 +++--- ape-2.3-1/ape/R/compar.ou.R | 6 - ape-2.3-1/ape/R/dist.gene.R | 6 - ape-2.3-1/ape/R/dist.topo.R | 8 +- ape-2.3-1/ape/R/drop.tip.R | 103 +++++++++++++++++++------------- ape-2.3-1/ape/R/gammaStat.R | 6 - ape-2.3-1/ape/R/is.binary.tree.R | 4 - ape-2.3-1/ape/R/is.monophyletic.R |only ape-2.3-1/ape/R/is.ultrametric.R | 4 - ape-2.3-1/ape/R/klastorin.R | 59 ------------------ ape-2.3-1/ape/R/ltt.plot.R | 8 +- ape-2.3-1/ape/R/mrca.R | 6 - ape-2.3-1/ape/R/pic.R | 6 - ape-2.3-1/ape/R/read.nexus.R | 5 - ape-2.3-1/ape/R/read.tree.R | 4 - ape-2.3-1/ape/R/root.R | 10 +-- ape-2.3-1/ape/R/rotate.R | 2 ape-2.3-1/ape/R/rtree.R | 17 ++--- ape-2.3-1/ape/R/summary.phylo.R | 19 +++-- ape-2.3-1/ape/R/vcv.phylo.R | 6 - ape-2.3-1/ape/R/which.edge.R | 6 - ape-2.3-1/ape/R/write.dna.R | 6 - ape-2.3-1/ape/R/write.tree.R | 13 ++-- ape-2.3-1/ape/R/yule.R | 23 +++++-- ape-2.3-1/ape/R/zoom.R | 13 +--- ape-2.3-1/ape/Thanks | 2 ape-2.3-1/ape/inst/doc/MoranI.pdf |binary ape-2.3-1/ape/man/DNAbin.Rd | 5 + ape-2.3-1/ape/man/Initialize.corPhyl.Rd | 2 ape-2.3-1/ape/man/ape-internal.Rd | 9 -- ape-2.3-1/ape/man/ape-package.Rd | 9 +- ape-2.3-1/ape/man/consensus.Rd | 6 - ape-2.3-1/ape/man/dist.dna.Rd | 4 - ape-2.3-1/ape/man/drop.tip.Rd | 12 ++- ape-2.3-1/ape/man/is.monophyletic.Rd |only ape-2.3-1/ape/man/makeNodeLabel.Rd | 2 ape-2.3-1/ape/man/opsin.Rd | 3 ape-2.3-1/ape/man/yule.cov.Rd | 20 +++--- ape-2.3/ape/man/klastorin.Rd |only ape-2.3/ape/src/treefunc.c |only 48 files changed, 305 insertions(+), 266 deletions(-)
More information about ape at CRAN
Path: /cran/updated | permanent link
More information about aCGH.Spline at CRAN
Path: /cran/new | permanent link
Author: Jonathan P. Weeks
Diff between plink versions 1.1-3 dated 2009-06-14 and 1.1-4 dated 2009-06-19
More information about plink at CRAN
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a common
item design. The unidimensional methods include the Mean/Mean,
Mean/Sigma, Haebara, and Stocking-Lord methods for dichotomous
(1PL, 2PL and 3PL) and/or polytomous (graded response, partial
credit/generalized partial credit, nominal, and multiple-choice
model) items. The multidimensional methods include the
Reckase-Martineau method and extensions of the Haebara and
Stocking-Lord method using a single dilation parameter,
multiple dilation parameters, or the Oshima, Davey, & Lee
approach for multidimensional extensions of all the
unidimensional dichotomous and polytomous item response models.
The package also includes functions for importing item and/or
ability parameters from common IRT software and ploting item
characteristic/category curves or surfaces and vector plots.
DESCRIPTION | 37 ++--
R/drm.R | 4
R/gpcm.R | 6
R/grm.R | 6
R/mcm.R | 2
R/mixed.R | 2
R/nrm.R | 2
R/plink.R | 130 ++++++++++-----
R/plot.R | 442 ++++++++++++++++++++++++++++++---------------------
R/read.bilog.R | 20 +-
inst/CITATION | 4
inst/NEWS | 28 +++
man/drm-methods.Rd | 12 -
man/gpcm-methods.Rd | 12 -
man/grm-methods.Rd | 8
man/mixed-methods.Rd | 9 +
man/plink-methods.Rd | 45 +++--
man/plot.irt.prob.Rd | 3
man/read.bilog.Rd | 20 +-
19 files changed, 496 insertions(+), 296 deletions(-)
Path: /cran/updated | permanent link
Author: Chris Fraley and Adrian Raftery
Title: Model-Based Clustering / Normal Mixture Modeling
Description: Model-based clustering and normal mixture modeling
including Bayesian regularization
Diff between mclust versions 3.2 dated 2009-04-29 and 3.2.1 dated 2009-06-19
CHANGELOG | 3 ++- DESCRIPTION | 11 ++++++----- R/mclust.R | 15 +++++++++++---- 3 files changed, 19 insertions(+), 10 deletions(-)
More information about mclust at CRAN
Path: /cran/updated | permanent link
Author: Grace Chiu
Diff between bentcableAR versions 0.2 dated 2009-06-18 and 0.2.1 dated 2009-06-19
More information about bentcableAR at CRAN
Title: Bent-Cable Regression for Independent Data or Autoregressive
Time Series
Description: This package contains two main interfaces for fitting and
diagnosing bent-cable regressions for autoregressive
time-series data or independent data (time series or
otherwise). The interfaces are 'bentcable.ar()' and
'bentcable.dev.plot()'. Some components in the package can also
be used as stand-alone functions. The bent cable
(linear-quadratic-linear) generalizes the broken stick
(linear-linear), which is also handled by this package. Version
0.2 corrects a glitch in the computation of confidence
intervals for the CTP.
DESCRIPTION | 8 ++++----
man/bentcableAR.Rd | 4 ++--
2 files changed, 6 insertions(+), 6 deletions(-)
Path: /cran/updated | permanent link
Author: Ollivier TARAMASCO
Title: Hidden Markov Models simulations and estimations
Description: Discrete, univariate or multivariate gaussian, mixture of
univariate or multivariate gaussian HMM functions for
simulation and estimation.
Diff between RHmm versions 1.3.0 dated 2009-04-27 and 1.3.1 dated 2009-06-19
DESCRIPTION | 10 ++++++---- R/RHmm-HyperNew.R | 4 ++-- R/RHmm-internals.R | 4 ++-- R/RHmm.R | 4 ++-- README | 14 +++++++++++--- src/AllDistributions.h | 2 +- src/Debogage.h | 2 +- src/Hmm.h | 4 ++-- src/Kmeans.cpp | 2 +- src/Kmeans.h | 6 +++--- src/Main.cpp |only src/MultivariateNormalUtil.cpp | 2 +- src/MultivariateNormalUtil.h | 2 +- src/OTMathUtil.h | 2 +- src/REquivalents.h | 2 +- src/RHmm.cpp | 2 +- src/RHmm.h | 2 +- src/SamplesUtil.cpp | 2 +- src/SamplesUtil.h | 2 +- src/cBaumWelch.cpp | 2 +- src/cBaumWelch.h | 2 +- src/cBaumWelchInParam.cpp | 2 +- src/cBaumWelchInParam.h | 2 +- src/cDiscrete.cpp | 2 +- src/cDiscrete.h | 2 +- src/cDistribution.h | 2 +- src/cHmm.cpp | 2 +- src/cHmm.h | 2 +- src/cHmmFit.cpp | 2 +- src/cHmmFit.h | 2 +- src/cInParam.cpp | 2 +- src/cInParam.h | 2 +- src/cLogBaumWelch.cpp | 2 +- src/cLogBaumWelch.h | 2 +- src/cMixtMultivariateNormal.cpp | 2 +- src/cMixtMultivariateNormal.h | 2 +- src/cMixtUnivariateNormal.cpp | 2 +- src/cMixtUnivariateNormal.h | 2 +- src/cMultivariateNormal.cpp | 2 +- src/cMultivariateNormal.h | 2 +- src/cOTError.cpp | 2 +- src/cOTError.h | 2 +- src/cOTMatrix.cpp | 2 +- src/cOTMatrix.h | 2 +- src/cOTVector.cpp | 2 +- src/cOTVector.h | 2 +- src/cRUtils.cpp | 2 +- src/cRUtils.h | 2 +- src/cRandomGenerator.h | 2 +- src/cUnivariateNormal.cpp | 2 +- src/cUnivariateNormal.h | 2 +- src/cViterbi.cpp | 2 +- src/cViterbi.h | 2 +- src/logprob.cpp | 2 +- src/logprob.h | 2 +- 55 files changed, 75 insertions(+), 65 deletions(-)
More information about RHmm at CRAN
Path: /cran/updated | permanent link
Author: Pedro Brasil
Diff between DiagnosisMed versions 0.2.2 dated 2009-06-07 and 0.2.2.1 dated 2009-06-19
More information about DiagnosisMed at CRAN
Title: Diagnostic test accuracy evaluation for medical professionals.
Description: DiagnosisMed is a package to analyze data from diagnostic
test accuracy evaluating health conditions. It is being built
to be used by health professionals. This package is - or soon
will be - able to estimate sample size for common situations in
diagnostic test accuracy, estimate sensitivity and specificity
from categorical and continuous test results including some
evaluations of indeterminate results, or compare different
analysis strategies into measures commonly used by health
professionals.
DESCRIPTION | 12 +-
R/ROC.r | 135 +++++++++++++-------------------
R/TGROC.r | 213 ++++++++++++----------------------------------------
R/diagnosis.r | 16 ++-
R/diagnosisI.r | 16 ++-
R/plot.ROC.r | 2
R/plot.TGROC.r |only
R/print.ROC.r | 2
man/LRgrgaph.Rd | 7 +
man/ROC.Rd | 8 +
man/TGROC.Rd | 14 ++-
man/diagnosis.Rd | 2
man/interact.ROC.Rd | 1
man/plot.diag.Rd | 1
14 files changed, 169 insertions(+), 260 deletions(-)
Path: /cran/updated | permanent link
Author: Friedrich Leisch
Title: Flexible Cluster Algorithms
Description: The main function kcca implements a general framework for
k-centroids cluster analysis supporting arbitrary distance
measures and centroid computation. Further cluster methods
include hard competitive learning, neural gas, and QT
clustering. There are numerous visualization methods for
cluster results (neighborhood graphs, convex cluster hulls,
barcharts of centroids, ...), and bootstrap methods for the
analysis of cluster stability.
Diff between flexclust versions 1.1-2 dated 2009-02-22 and 1.2-0 dated 2009-06-19
flexclust-1.1-2/flexclust/inst/NEWS |only flexclust-1.2-0/flexclust/DESCRIPTION | 23 ++- flexclust-1.2-0/flexclust/NAMESPACE | 15 +- flexclust-1.2-0/flexclust/NEWS | 15 ++ flexclust-1.2-0/flexclust/R/AAA-classes.R | 12 + flexclust-1.2-0/flexclust/R/barplot.R | 143 ++++++++++++++++++----- flexclust-1.2-0/flexclust/R/bootstrap.R | 5 flexclust-1.2-0/flexclust/R/bundestag.R | 15 +- flexclust-1.2-0/flexclust/R/kcca.R | 35 +++-- flexclust-1.2-0/flexclust/R/shadow.R |only flexclust-1.2-0/flexclust/R/stripes.R |only flexclust-1.2-0/flexclust/R/utils.R | 17 ++ flexclust-1.2-0/flexclust/inst/CITATION | 53 ++------ flexclust-1.2-0/flexclust/man/barplot-methods.Rd | 39 +++++- flexclust-1.2-0/flexclust/man/bundestag.Rd | 10 + flexclust-1.2-0/flexclust/man/kcca.Rd | 15 ++ flexclust-1.2-0/flexclust/man/predict-methods.Rd | 3 flexclust-1.2-0/flexclust/man/propBarchart.Rd |only flexclust-1.2-0/flexclust/man/shadow.Rd |only flexclust-1.2-0/flexclust/man/shadowStars.Rd |only flexclust-1.2-0/flexclust/man/stepFlexclust.Rd | 14 +- flexclust-1.2-0/flexclust/man/stripes.Rd |only 22 files changed, 303 insertions(+), 111 deletions(-)
More information about flexclust at CRAN
Path: /cran/updated | permanent link
Author: Peter K Dunn
Diff between tweedie versions 1.6.2 dated 2009-02-16 and 1.6.6 dated 2009-06-19
More information about tweedie at CRAN
Title: Tweedie exponential family models
Description: Maximum likelihood computations for Tweedie families.
CHANGE.log | 14 +++++
DESCRIPTION | 12 ++---
R/tweedie.R | 115 ++++++++++++++++++++++++++++++++-----------------
man/tweedie-package.Rd | 12 ++---
man/tweedie.profile.Rd | 20 +++++++-
5 files changed, 122 insertions(+), 51 deletions(-)
Path: /cran/updated | permanent link
Author: Arne Henningsen and Jeff D. Hamann
Title: Estimating Systems of Simultaneous Equations
Description: This package contains functions for fitting simultaneous
systems of linear and nonlinear equations using Ordinary Least
Squares (OLS), Weighted Least Squares (WLS), Seemingly
Unrelated Regressions (SUR), Two-Stage Least Squares (2SLS),
Weighted Two-Stage Least Squares (W2SLS), and Three-Stage Least
Squares (3SLS).
Diff between systemfit versions 1.1-0 dated 2009-06-18 and 1.1-2 dated 2009-06-19
systemfit-1.1-0/systemfit/tests |only systemfit-1.1-2/systemfit/DESCRIPTION | 8 systemfit-1.1-2/systemfit/NEWS | 7 systemfit-1.1-2/systemfit/inst/doc/systemfit.pdf | 573 +++++++++++------------ systemfit-1.1-2/systemfit/man/systemfit.Rd | 31 + 5 files changed, 328 insertions(+), 291 deletions(-)
More information about systemfit at CRAN
Path: /cran/updated | permanent link
Author: Stefano Maria Iacus
Title: Simulation and Inference for Stochastic Differential Equations
Description: Companion package to the book Simulation and Inference for
Stochastic Differential Equations With R Examples, ISBN
978-0-387-75838-1, Springer, NY.
Diff between sde versions 2.0.5 dated 2009-04-15 and 2.0.6 dated 2009-06-19
DESCRIPTION | 12 ++++++------ R/zzz.R | 4 ++-- 2 files changed, 8 insertions(+), 8 deletions(-)
More information about sde at CRAN
Path: /cran/updated | permanent link
Author: Petr Savicky
Diff between pspearman versions 0.1-10 dated 2009-03-04 and 0.2-5 dated 2009-06-19
More information about pspearman at CRAN
Title: Spearman's rank correlation test
Description: Spearman's rank correlation test with precomputed exact
null distribution for n <= 22.
pspearman-0.1-10/pspearman/man/pspearman-package.Rd |only
pspearman-0.2-5/pspearman/CHANGELOG | 4
pspearman-0.2-5/pspearman/DESCRIPTION | 11 -
pspearman-0.2-5/pspearman/NAMESPACE |only
pspearman-0.2-5/pspearman/R/init.R | 6
pspearman-0.2-5/pspearman/R/spearman.data.R |only
pspearman-0.2-5/pspearman/R/spearman.test.R | 186 +++++++++++---------
pspearman-0.2-5/pspearman/man/pspearman.Rd |only
pspearman-0.2-5/pspearman/man/spearman.test.Rd | 68 +++----
9 files changed, 146 insertions(+), 129 deletions(-)
Path: /cran/updated | permanent link
Author: Andrew Gelman
Diff between mi versions 0.08-01 dated 2009-06-17 and 0.08-02 dated 2009-06-19
More information about mi at CRAN
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 3 +++
DESCRIPTION | 8 ++++----
R/AllInternal.R | 2 +-
R/mi.R | 4 +---
R/mi.binary.R | 10 ++++------
R/mi.continuous.R | 14 ++++++--------
R/mi.count.R | 11 +++++------
R/mi.info.R | 4 ++--
R/plot.R | 10 ++++++----
R/resid.R | 4 ++--
10 files changed, 34 insertions(+), 36 deletions(-)
Path: /cran/updated | permanent link
Author: Dimitris Rizopoulos
Diff between ltm versions 0.9-0 dated 2009-03-02 and 0.9-1 dated 2009-06-19
More information about ltm at CRAN
Title: Latent Trait Models under IRT
Description: Analysis of multivariate dichotomous and polytomous data
using latent trait models under the Item Response Theory
approach. It includes the Rasch, the Two-Parameter Logistic,
the Birnbaum's Three-Parameter, the Graded Response, and the
Generalized Partial Credit Models.
DESCRIPTION | 32 +++++++++++++++++++-------------
R/EM.R | 2 +-
R/GHpoints.R | 2 +-
R/GoF.gpcm.R | 2 +-
R/GoF.rasch.R | 2 +-
R/IRT.parm.R | 2 +-
R/IRT.parm.grm.R | 2 +-
R/IRT.parm.ltm.R | 2 +-
R/IRT.parm.rasch.R | 2 +-
R/IRT.parm.tpm.R | 2 +-
R/anova.gpcm.R | 2 +-
R/anova.grm.R | 2 +-
R/anova.ltm.R | 2 +-
R/anova.rasch.R | 2 +-
R/anova.tpm.R | 2 +-
R/betas.gpcm.R | 2 +-
R/betas.grm.R | 2 +-
R/betas.ltm.R | 2 +-
R/betas.rasch.R | 2 +-
R/biserial.cor.R | 2 +-
R/cd.tpm.R | 2 +-
R/cd.vec.R | 2 +-
R/chisq.irt.R | 2 +-
R/coef.gpcm.R | 4 ++--
R/coef.grm.R | 4 ++--
R/coef.ltm.R | 4 ++--
R/coef.rasch.R | 4 ++--
R/coef.tpm.R | 4 ++--
R/cprobs.R | 2 +-
R/crf.GPCM.R | 2 +-
R/crf.GPCM2.R | 2 +-
R/cronbach.alpha.R | 2 +-
R/cumprobs.R | 2 +-
R/descript.R | 2 +-
R/factor.scores.R | 2 +-
R/factor.scores.gpcm.R | 2 +-
R/factor.scores.grm.R | 2 +-
R/factor.scores.ltm.R | 2 +-
R/factor.scores.rasch.R | 2 +-
R/factor.scores.tpm.R | 2 +-
R/fd.vec.R | 2 +-
R/fitted.gpcm.R | 4 ++--
R/fitted.grm.R | 2 +-
R/fitted.ltm.R | 2 +-
R/fitted.rasch.R | 2 +-
R/fitted.tpm.R | 2 +-
R/fscores.g.R | 2 +-
R/fscores.gp.R | 2 +-
R/fscores.l.R | 2 +-
R/fscores.r.R | 2 +-
R/fscores.t.R | 2 +-
R/gauher.R | 2 +-
R/gpcm.R | 2 +-
R/grm.R | 2 +-
R/infoGPCM.R | 2 +-
R/infoprobs.R | 2 +-
R/information.R | 2 +-
R/iprobs.R | 2 +-
R/item.fit.R | 2 +-
R/jacobian.R | 2 +-
R/linpred.GPCM.R | 2 +-
R/logLik.gpcm.R | 2 +-
R/logLik.grm.R | 2 +-
R/logLik.ltm.R | 2 +-
R/logLik.rasch.R | 2 +-
R/logLik.tpm.R | 2 +-
R/logLiktpm.R | 2 +-
R/loglikgpcm.R | 2 +-
R/loglikgrm.R | 2 +-
R/loglikltm.R | 2 +-
R/ltm.R | 2 +-
R/ltm.fit.R | 2 +-
R/margins.R | 2 +-
R/margins.gpcm.R | 2 +-
R/margins.grm.R | 2 +-
R/margins.ltm.R | 2 +-
R/margins.rasch.R | 2 +-
R/margins.tpm.R | 2 +-
R/matArrays.R | 2 +-
R/matMeans.R | 2 +-
R/matSums.R | 2 +-
R/matches.R | 2 +-
R/mult.choice.R | 2 +-
R/observedFreqs.R | 2 +-
R/onAttach.R | 2 +-
R/person.fit.R | 2 +-
R/plot.aov.gpcm.R | 2 +-
R/plot.descript.R | 3 +--
R/plot.fscores.R | 2 +-
R/plot.gpcm.R | 2 +-
R/plot.grm.R | 2 +-
R/plot.ltm.R | 2 +-
R/plot.rasch.R | 2 +-
R/plot.tpm.R | 2 +-
R/plot.unidimTest.R | 2 +-
R/print.GoF.gpcm.R | 2 +-
R/print.GoF.rasch.R | 2 +-
R/print.aov.gpcm.R | 2 +-
R/print.aov.grm.R | 2 +-
R/print.aov.ltm.R | 2 +-
R/print.aov.rasch.R | 2 +-
R/print.aov.tpm.R | 2 +-
R/print.cronbachAlpha.R | 2 +-
R/print.descript.R | 2 +-
R/print.fscores.R | 2 +-
R/print.gpcm.R | 2 +-
R/print.grm.R | 2 +-
R/print.information.R | 2 +-
R/print.itemFit.R | 8 ++++----
R/print.ltm.R | 2 +-
R/print.margins.gpcm.R | 2 +-
R/print.margins.grm.R | 2 +-
R/print.margins.ltm.R | 2 +-
R/print.persFit.R | 6 +++---
R/print.rasch.R | 2 +-
R/print.rcor.test.R | 9 ++++-----
R/print.summ.gpcm.R | 2 +-
R/print.summ.grm.R | 2 +-
R/print.summ.ltm.R | 2 +-
R/print.summ.rasch.R | 2 +-
R/print.summ.tpm.R | 2 +-
R/print.tpm.R | 2 +-
R/print.unidimTest.R | 2 +-
R/probs.R | 2 +-
R/rasch.R | 2 +-
R/rcor.test.R | 2 +-
R/residuals.gpcm.R | 2 +-
R/residuals.grm.R | 2 +-
R/residuals.ltm.R | 2 +-
R/residuals.rasch.R | 2 +-
R/residuals.tpm.R | 2 +-
R/rmvlogis.R | 2 +-
R/rmvordlogis.R | 2 +-
R/scoregpcm.R | 2 +-
R/scoregpcmSNW.R | 2 +-
R/scoregrm.R | 2 +-
R/scoreltm.R | 2 +-
R/scoretpm.R | 2 +-
R/simulate.gpcm.R | 2 +-
R/simulate.grm.R | 2 +-
R/start.val.gpcm.R | 2 +-
R/start.val.grm.R | 2 +-
R/start.val.ltm.R | 2 +-
R/start.val.rasch.R | 2 +-
R/start.val.tpm.R | 2 +-
R/summary.gpcm.R | 2 +-
R/summary.grm.R | 2 +-
R/summary.ltm.R | 2 +-
R/summary.rasch.R | 2 +-
R/summary.tpm.R | 2 +-
R/testEquatingData.R | 2 +-
R/thetas.tpm.R | 2 +-
R/tpm.R | 2 +-
R/unidimTest.R | 2 +-
R/vcov.gpcm.R | 2 +-
R/vcov.grm.R | 2 +-
R/vcov.ltm.R | 2 +-
R/vcov.rasch.R | 2 +-
R/vcov.tpm.R | 2 +-
data/Abortion.rda |binary
data/Environment.rda |binary
data/LSAT.rda |binary
data/Mobility.rda |binary
data/Science.rda |binary
data/WIRS.rda |binary
inst/NEWS | 11 +++++++++++
man/ltm-package.Rd | 4 ++--
167 files changed, 204 insertions(+), 189 deletions(-)
Path: /cran/updated | permanent link
Author: Bob Wheeler
Diff between SuppDists versions 1.1-2 dated 2008-03-05 and 1.1-4 dated 2009-06-18
More information about SuppDists at CRAN
Title: Supplementary distributions
Description: Ten distributions supplementing those built into R.
Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi
squared, Spearman's rho, maximum F ratio, the Pearson product
moment correlation coefficiant, Johnson distributions, normal
scores and generalized hypergeometric distributions. In
addition two random number generators of George Marsaglia are
included.
DESCRIPTION | 32 ++++++++++++++++++--------------
man/Friedman.Rd | 2 +-
man/Johnson.Rd | 2 +-
man/Kendall.Rd | 2 +-
man/KruskalWallis.Rd | 2 +-
man/MWC1019.Rd | 6 ++++--
man/NormalScore.Rd | 2 +-
man/Pearson.Rd | 2 +-
man/Spearman.Rd | 2 +-
man/ghyper.Rd | 4 ++--
man/ghyperTypes.Rd | 2 +-
man/invGauss.Rd | 2 +-
man/maxFratio.Rd | 2 +-
man/ziggurat.Rd | 4 +++-
14 files changed, 37 insertions(+), 29 deletions(-)
Path: /cran/updated | permanent link
Author: Marcello D'Orazio
Title: Statistical Matching
Description: This package provides some R functions to perform
statistical matching between two data sources. These functions
can also be used to impute missing values in data sets through
hot-deck methods.
Diff between StatMatch versions 0.6 dated 2009-02-01 and 0.7 dated 2009-06-18
DESCRIPTION | 31 ++++++++++++++++++------------- R/fact2dummy.R | 2 +- R/mixed.mtc.R | 2 +- 3 files changed, 20 insertions(+), 15 deletions(-)
More information about StatMatch at CRAN
Path: /cran/updated | permanent link
Author: Bob Wheeler
Diff between AlgDesign versions 1.0-9 dated 2008-03-05 and 1.0-10 dated 2009-06-18
More information about AlgDesign at CRAN
Title: AlgDesign
Description: Algorithmic experimental designs. Calculates exact and
approximate theory experimental designs for D,A, and I
criteria. Very large designs may be created. Experimental
designs may be blocked or blocked designs created from a
candidate list, using several criteria. The blocking can be
done when whole and within plot factors interact.
DESCRIPTION | 32 +++++++++++++++++---------------
R/Utility.R | 5 +++++
man/CCTable11.1a.Rd | 2 +-
man/EffRound.Rd | 2 +-
man/EvalBlock.Rd | 2 +-
man/EvalDesign.Rd | 2 +-
man/ExpFormula.Rd | 2 +-
man/Federov.Rd | 2 +-
man/ModelMatrix.Rd | 2 +-
man/ModelMatrixTerms.Rd |only
man/MonteOpt.Rd | 2 +-
man/TGTable3.Rd | 2 +-
man/TGTable5.Rd | 2 +-
man/blockOpt.Rd | 10 +++++-----
man/genFact.Rd | 2 +-
man/genMixture.Rd | 2 +-
16 files changed, 39 insertions(+), 32 deletions(-)
Path: /cran/updated | permanent link
Author: Roger Bivand and Danlin Yu
Title: Geographically weighted regression
Description: Functions for computing geographically weighted
regressions based on work by Chris Brunsdon, Martin Charlton
and Stewart Fortheringham, http://ncg.nuim.ie/ncg/GWR/index.htm
Diff between spgwr versions 0.5-10 dated 2009-06-05 and 0.5-12 dated 2009-06-18
ChangeLog | 14 ++++++++++ DESCRIPTION | 8 +++--- R/gwr.R | 45 +++++++++++++++++++++------------- R/gwr.cv.R | 11 ++++---- R/gwr.whole.test.R | 66 ++++++++++++++++++++++++++++++++++++-------------- R/gwr1.cv.R | 6 ++-- inst/ChangeLog | 14 ++++++++++ man/LMZ.F3GWR.test.Rd | 11 ++++++-- man/ggwr.sel.Rd | 4 ++- man/gwr.cv.Rd | 4 ++- 10 files changed, 133 insertions(+), 50 deletions(-)
More information about spgwr at CRAN
Path: /cran/updated | permanent link
Author: Roland Fried
Diff between robfilter versions 2.4 dated 2008-12-13 and 2.5 dated 2009-06-18
More information about robfilter at CRAN
Title: Robust Time Series Filters
Description: A set of functions to filter time series based on concepts
from robust statistics.
DESCRIPTION | 30 +++++++++++++++++-------------
R/madore.filter.R | 34 +++++++++++++++++-----------------
man/madore.filter.Rd | 48 ++++++++++++++++++++++++++++++------------------
3 files changed, 64 insertions(+), 48 deletions(-)
Path: /cran/updated | permanent link
Author: Jim Lemon
Diff between prettyR versions 1.4 dated 2009-01-20 and 1.5 dated 2009-06-18
More information about prettyR at CRAN
Title: Pretty descriptive stats.
Description: Functions for conventionally formatted descriptive stats,
and to format R output as HTML.
DESCRIPTION | 16 +++++++++-------
R/delim.table.R | 19 +++++++++++++------
R/htmlize.R | 4 ++++
man/delim.table.Rd | 20 +++++++++++++++-----
4 files changed, 41 insertions(+), 18 deletions(-)
Path: /cran/updated | permanent link
Author: Arne Henningsen and Jeff D. Hamann
Title: Estimating Systems of Simultaneous Equations
Description: This package contains functions for fitting simultaneous
systems of linear and nonlinear equations using Ordinary Least
Squares (OLS), Weighted Least Squares (WLS), Seemingly
Unrelated Regressions (SUR), Two-Stage Least Squares (2SLS),
Weighted Two-Stage Least Squares (W2SLS), and Three-Stage Least
Squares (3SLS).
Diff between systemfit versions 1.0-8 dated 2009-01-26 and 1.1-0 dated 2009-06-18
DESCRIPTION | 19 NAMESPACE |only NEWS |only R/calcGLS.R | 40 + R/calcResidCov.R | 51 + R/fiml.R | 7 R/ftest.R | 18 R/predict.systemfit.R | 8 R/prepareData.R | 1 R/smallMethods.R | 21 R/summary.systemfit.R | 35 - R/systemfit.R | 250 +++++--- inst/doc/systemfit.pdf | 1234 +++++++++++++++++++++---------------------- man/fitted.systemfit.Rd | 6 man/residuals.systemfit.Rd | 6 man/systemfit.Rd | 8 tests/KleinI.R |only tests/KleinI.Rout.save |only tests/KleinI_noMat.R |only tests/KleinI_noMat.Rout.save |only tests/test_2sls.R | 10 tests/test_2sls.Rout.save | 30 - tests/test_3sls.R | 10 tests/test_3sls.Rout.save | 25 tests/test_hausman.R | 2 tests/test_hausman.Rout.save | 12 tests/test_ols.R | 11 tests/test_ols.Rout.save | 31 - tests/test_panel.Rout.save | 585 ++++++++++---------- tests/test_sur.R | 11 tests/test_sur.Rout.save | 26 tests/test_w2sls.R | 10 tests/test_w2sls.Rout.save | 30 - tests/test_wls.R | 11 tests/test_wls.Rout.save | 31 - 35 files changed, 1315 insertions(+), 1224 deletions(-)
More information about systemfit at CRAN
Path: /cran/updated | permanent link
Author: Thomas Hoffmann
Diff between pbatR versions 2.1.4 dated 2009-03-10 and 2.1.5 dated 2009-06-18
More information about pbatR at CRAN
Title: P2BAT
Description: This package provides data analysis via the pbat program,
and an alternative internal implementation of the power
calculations via simulation only. For analysis, this package
provides a frontend to the PBAT software, automatically reading
in the output from the pbat program and displaying the
corresponding figure when appropriate (i.e. PBAT-logrank). It
includes support for multiple processes and clusters. For
analysis, users must download PBAT (developed by Christoph
Lange) and accept it's license, available on the PBAT webpage.
Both the data analysis and power calculations have command line
and graphical interfaces using tcltk.
DESCRIPTION | 27 +++++++++++++++++++++------
R/cped.R | 2 +-
R/pbatGUI.R | 34 ++++++++++++++++++++++++++++++----
src/wait.cpp | 2 +-
4 files changed, 53 insertions(+), 12 deletions(-)
Path: /cran/updated | permanent link
Author: Henrik Bengtsson
Diff between matrixStats versions 0.1.5 dated 2009-06-14 and 0.1.6 dated 2009-06-18
More information about matrixStats at CRAN
Title: Methods that apply to rows and columns of a matrix
Description: This packages provides methods operating on rows and
columns of matrices. The methods are optimized for speed and
memory. This package is currently in a beta phase. Make sure
to read the 'Roadmap' section in the package help.
DESCRIPTION | 8 ++++----
R/999.package.R | 3 +--
R/rowWeightedMedians.matrix.R | 9 ++++++++-
inst/NEWS | 7 +++++++
man/matrixStats-package.Rd | 2 +-
man/rowWeightedMedians.matrix.Rd | 4 +++-
6 files changed, 24 insertions(+), 9 deletions(-)
Path: /cran/updated | permanent link
Author: Tim Coelli, Arne Henningsen
Title: Stochastic Frontier Analysis
Description: Maximum Likelihood Estimation of Stochastic Frontier
Production and Cost Functions. Two specifications are
available: the error components specification with time-varying
efficiencies (Battese and Coelli, 1992) and a model
specification in which the firm effects are directly influenced
by a number of variables (Battese and Coelli, 1995).
Diff between frontier versions 0.99-2 dated 2009-05-05 and 0.991-0 dated 2009-06-18
DESCRIPTION | 8 NEWS | 40 R/frontier.R | 114 R/frontierQuad.R | 13 R/logLik.frontier.R | 64 R/print.frontier.R | 4 R/print.summary.frontier.R | 4 man/frontier.Rd | 65 man/frontierQuad.Rd | 4 man/logLik.frontier.Rd | 36 src/dis.c |only src/front41.f | 143 tests/frontier41.Rout.save | 2 tests/frontierTest.R | 327 tests/frontierTest.Rout.save |20665 ++++++++++++++++++++++++++++++------------- tests/nestedModels.R |only tests/nestedModels.Rout.save |only tests/translogRay.Rout.save | 331 18 files changed, 15564 insertions(+), 6256 deletions(-)
More information about frontier at CRAN
Path: /cran/updated | permanent link
Author: Andrey Paramonov
Title: Misc Functions of the Center for the Mathematical Research
Description: A collection of useful helper routines developed by
students of the Center for the Mathematical Research, Stankin,
Moscow.
Diff between cmrutils versions 1.2 dated 2009-06-16 and 1.2-1 dated 2009-06-18
DESCRIPTION | 10 +++++----- man/cmrutils-package.Rd | 6 +++--- man/makefig.Rd | 2 ++ 3 files changed, 10 insertions(+), 8 deletions(-)
More information about cmrutils at CRAN
Path: /cran/updated | permanent link
More information about cmprskContin at CRAN
Path: /cran/new | permanent link
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.17 dated 2009-06-05 and 4.18 dated 2009-06-18
caret-4.17/caret/inst/doc/caretMisc.tex |only caret-4.17/caret/inst/doc/caretSelection.tex |only caret-4.17/caret/inst/doc/caretTrain.tex |only caret-4.17/caret/inst/doc/caretVarImp.tex |only caret-4.18/caret/DESCRIPTION | 10 caret-4.18/caret/R/format.bagEarth.R | 4 caret-4.18/caret/R/makeCubistFiles.R |only caret-4.18/caret/R/nearZeroVar.R | 2 caret-4.18/caret/inst/CHANGES | 16 caret-4.18/caret/inst/doc/caretMisc.pdf | 767 +++++++++++++-------------- caret-4.18/caret/inst/doc/caretSelection.pdf | 643 +++++++++++----------- caret-4.18/caret/inst/doc/caretTrain.pdf |binary caret-4.18/caret/inst/doc/caretVarImp.pdf |binary caret-4.18/caret/man/format.bagEarth.Rd | 5 14 files changed, 730 insertions(+), 717 deletions(-)
More information about caret at CRAN
Path: /cran/updated | permanent link
Author: Grace Chiu
Diff between bentcableAR versions 0.1.2 dated 2008-05-16 and 0.2 dated 2009-06-18
More information about bentcableAR at CRAN
Title: Bent-Cable Regression for Independent Data or Autoregressive
Time Series
Description: This package contains two main interfaces for fitting and
diagnosing bent-cable regressions for autoregressive
time-series data or independent data (time series or
otherwise). The interfaces are 'bentcable.ar()' and
'bentcable.dev.plot()'. Some components in the package can also
be used as stand-alone functions. The bent cable
(linear-quadratic-linear) generalizes the broken stick
(linear-linear), which is also handled by this package. Version
0.2 corrects a glitch in the computation of confidence
intervals for the CTP.
DESCRIPTION | 40 ++++++++++++++++++++--------------------
R/code.r | 9 ++++-----
man/sockeye.Rd | 10 ++++++----
man/stagnant.Rd | 6 ++++--
4 files changed, 34 insertions(+), 31 deletions(-)
Path: /cran/updated | permanent link
Author: Markus Loecher, Sense Networks
Title: Overlays on Google map tiles in R
Description: This package serves two purposes: (i) Provide a
comfortable R interface to query the Google server for static
maps, and (ii) Use the map as a background image to overlay
plots within R. This requires proper coordinate scaling.
Diff between RgoogleMaps versions 1.1.2 dated 2009-05-20 and 1.1.3 dated 2009-06-18
DESCRIPTION | 11 ++++++----- R/GetMap.R | 16 ++++++++++++---- R/GetMap.bbox.R | 4 ++-- R/MapBackground.R | 7 ++++--- R/PlotOnStaticMap.R | 2 +- R/RGB2GRAY.R | 2 +- inst/doc/RgoogleMaps-intro.pdf |binary man/GetMap.Rd | 5 +++++ man/GetMap.bbox.Rd | 19 +++++++++++++++++++ man/MapBackground.Rd | 2 +- man/PlotOnStaticMap.Rd | 8 +++++++- man/RgoogleMaps-package.Rd | 6 ++++-- 12 files changed, 62 insertions(+), 20 deletions(-)
More information about RgoogleMaps at CRAN
Path: /cran/updated | permanent link
More information about PCS at CRAN
Path: /cran/new | permanent link
Author: Karline Soetaert
Diff between NetIndices versions 1.2 dated 2009-01-16 and 1.3 dated 2009-06-17
More information about NetIndices at CRAN
Title: Estimating network indices, including trophic structure of
foodwebs in R
Description: Given a network (e.g. a food web), estimates several
network indices. These include: Ascendency network indices,
Direct and indirect dependencies, Effective measures, Environ
network indices, General network indices, Pathway analysis,
Network uncertainty indices and constraint efficiencies and the
trophic level and omnivory indices of food webs.
NetIndices-1.2/NetIndices/inst/doc/Sweave.sty |only
NetIndices-1.2/NetIndices/inst/doc/netindices.tex |only
NetIndices-1.3/NetIndices/DESCRIPTION | 35 -
NetIndices-1.3/NetIndices/R/AscInd.R |only
NetIndices-1.3/NetIndices/R/Dependency.R |only
NetIndices-1.3/NetIndices/R/EffInd.R |only
NetIndices-1.3/NetIndices/R/EnvInd.R |only
NetIndices-1.3/NetIndices/R/GenInd.R |only
NetIndices-1.3/NetIndices/R/NetIndices.R | 739 ++--------------------
NetIndices-1.3/NetIndices/R/PathInd.R |only
NetIndices-1.3/NetIndices/R/TrophInd.R |only
NetIndices-1.3/NetIndices/R/UnInd.R |only
NetIndices-1.3/NetIndices/inst/doc/NetIndices.bib | 23
NetIndices-1.3/NetIndices/inst/doc/NetIndices.pdf |binary
NetIndices-1.3/NetIndices/inst/doc/NetIndices.rnw | 229 +++---
NetIndices-1.3/NetIndices/man/AscInd.Rd | 100 ++
NetIndices-1.3/NetIndices/man/Conesprings.Rd | 82 +-
NetIndices-1.3/NetIndices/man/Dependency.Rd | 40 -
NetIndices-1.3/NetIndices/man/EffInd.Rd | 66 +
NetIndices-1.3/NetIndices/man/EnvInd.Rd | 118 ++-
NetIndices-1.3/NetIndices/man/GenInd.Rd | 107 ++-
NetIndices-1.3/NetIndices/man/NetIndices.Rd | 31
NetIndices-1.3/NetIndices/man/PathInd.Rd | 92 ++
NetIndices-1.3/NetIndices/man/Takapoto.Rd | 77 +-
NetIndices-1.3/NetIndices/man/TrophInd.Rd | 89 +-
NetIndices-1.3/NetIndices/man/UncInd.Rd | 102 ++-
26 files changed, 899 insertions(+), 1031 deletions(-)
Path: /cran/updated | permanent link
Author: Karline Soetaert
Diff between LIM versions 1.2 dated 2009-01-20 and 1.3 dated 2009-06-17
More information about LIM at CRAN
Title: Linear Inverse Model examples and solution methods.
Description: Functions that read and solve linear inverse problems
(food web problems, linear programming problems). These
problems find solutions to linear or quadratic functions: min
or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(ai*xi)
subject to equality constraints Ex=f and inequality constraints
Gx>=h. Uses package limSolve.
DESCRIPTION | 35
R/Flowmatrix.R |only
R/LIM.r | 564 -------
R/Ldei.R |only
R/Linp.R |only
R/Lsei.R |only
R/Plotranges.R |only
R/Variables.R |only
R/Varranges.R |only
R/Xranges.R |only
R/Xsample.R |only
R/read.limfile.r | 1661 +++++++++++------------
inst/doc/LIM.Rnw | 1515 +++++++++++----------
inst/doc/LIM.pdf | 3097 ++++++++++++++++++++++---------------------
inst/doc/vignettes.bib | 434 ------
man/FILERigaAutumn.Rd | 75 -
man/Flowmatrix.Rd | 41
man/LIM.Rd | 37
man/LIMBlending.Rd | 91 -
man/LIMBrouageMudflat.Rd | 85 -
man/LIMCaliforniaSediment.Rd | 91 -
man/LIMEcoli.Rd | 97 -
man/LIMEverglades.Rd | 77 -
man/LIMRigaAutumn.Rd | 77 -
man/LIMRigaSpring.Rd | 90 -
man/LIMRigaSummer.Rd | 86 -
man/LIMScheldtIntertidal.Rd | 99 -
man/LIMTakapoto.Rd | 75 -
man/Ldei.Rd | 108 +
man/Linp.Rd | 114 +
man/Lsei.Rd | 174 +-
man/PrintMat.Rd | 28
man/Read.Rd | 164 +-
man/Setup.Rd | 133 +
man/Variables.Rd | 40
man/Varranges.Rd | 41
man/Xranges.Rd | 41
man/Xsample.Rd | 68
man/plotranges.Rd | 103 -
39 files changed, 4749 insertions(+), 4592 deletions(-)
Path: /cran/updated | permanent link
Author: Jari Oksanen, Roeland Kindt, Pierre Legendre, Bob O'Hara, Gavin
L. Simpson, Peter Solymos, M. Henry H. Stevens, Helene Wagner
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other functions
for community and vegetation ecologists.
Diff between vegan versions 1.15-2 dated 2009-04-15 and 1.15-3 dated 2009-06-17
DESCRIPTION | 8 R/adonis.R | 5 R/anosim.R | 4 R/anova.ccabyaxis.R | 12 R/anova.ccabymargin.R | 8 R/anova.ccabyterm.R | 16 R/capscale.R | 42 - R/eigenvals.R |only R/factorfit.R | 2 R/kendall.global.R | 3 R/mantel.R | 56 - R/mantel.partial.R | 74 - R/meandist.R |only R/mrpp.R | 2 R/ordiGetData.R | 4 R/ordilattice.getEnvfit.R | 2 R/ordisurf.R | 10 R/orditkplot.R | 4 R/ordixyplot.R | 2 R/panel.ordi.R | 4 R/plot.anosim.R | 2 R/plot.meandist.R |only R/print.anosim.R | 2 R/print.cca.R | 11 R/print.factorfit.R | 5 R/print.mantel.R | 2 R/print.mrpp.R | 2 R/print.permutest.cca.R | 2 R/print.protest.R | 2 R/print.summary.cca.R | 8 R/print.summary.meandist.R |only R/print.vectorfit.R | 5 R/protest.R | 4 R/summary.cca.R | 13 R/summary.meandist.R |only R/taxa2dist.R | 2 R/tsallis.R | 11 R/vectorfit.R | 2 R/wcmdscale.R | 7 inst/ChangeLog | 49 + inst/NEWS | 61 + inst/doc/FAQ-vegan.pdf |binary inst/doc/FAQ-vegan.texi | 32 inst/doc/decision-vegan.pdf | 1638 +++++++++++++++++++++---------------------- inst/doc/decision-vegan.tex | 16 inst/doc/diversity-vegan.pdf |binary inst/doc/diversity-vegan.tex | 69 - inst/doc/intro-vegan.pdf |binary inst/doc/intro-vegan.tex | 61 - man/anosim.Rd | 2 man/capscale.Rd | 70 + man/cca.object.Rd | 4 man/eigenvals.Rd |only man/envfit.Rd | 4 man/mantel.Rd | 4 man/metaMDS.Rd | 4 man/mrpp.Rd | 39 - man/ordisurf.Rd | 5 man/procrustes.Rd | 2 man/tsallis.Rd | 26 60 files changed, 1298 insertions(+), 1126 deletions(-)
More information about vegan at CRAN
Path: /cran/updated | permanent link
Author: Karline Soetaert
Diff between shape versions 1.2.1 dated 2009-02-20 and 1.2.2 dated 2009-06-17
More information about shape at CRAN
Title: Functions for plotting graphical shapes, colors
Description: Functions for plotting graphical shapes such as ellipses,
circles, cylinders, arrows, ... Support for the book "A
practical guide to ecological modelling - using R as a
simulation platform" by Karline Soetaert and Peter M.J. Herman
(2009). Springer. Includes demo(colorshapes)
shape-1.2.1/shape/man/graycol.Rd |only
shape-1.2.2/shape/DESCRIPTION | 35
shape-1.2.2/shape/R/A4.R |only
shape-1.2.2/shape/R/Arrowhead.R |only
shape-1.2.2/shape/R/Arrows.R |only
shape-1.2.2/shape/R/colorlegend.R |only
shape-1.2.2/shape/R/cylindersegment.R |only
shape-1.2.2/shape/R/drapecol.R |only
shape-1.2.2/shape/R/emptyplot.R |only
shape-1.2.2/shape/R/femmecol.R |only
shape-1.2.2/shape/R/filledcircle.R |only
shape-1.2.2/shape/R/filledcylinder.R |only
shape-1.2.2/shape/R/filledellipse.R |only
shape-1.2.2/shape/R/filledmultigonal.R |only
shape-1.2.2/shape/R/filledrectangle.R |only
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53 files changed, 7118 insertions(+), 7126 deletions(-)
Path: /cran/updated | permanent link
Author: Torsten Hothorn, Kurt Hornik, Carolin Strobl and Achim Zeileis
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning. The
core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems,
including nominal, ordinal, numeric, censored as well as
multivariate response variables and arbitrary measurement
scales of the covariates. Based on conditional inference trees,
cforest() provides an implementation of Breiman's random
forests. The function mob() implements an algorithm for
recursive partitioning based on parametric models (e.g. linear
models, GLMs or survival regression) employing parameter
instability tests for split selection. Extensible functionality
for visualizing tree-structured regression models is available.
Diff between party versions 0.9-997 dated 2009-06-04 and 0.9-998 dated 2009-06-17
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src/Classes.h | 2 src/IndependenceTest.c | 18 src/IndependenceTest.h | 2 src/Node.c | 9 src/Node.h | 2 src/SurrogateSplits.c | 4 src/TreeGrow.c | 6 1063 files changed, 39727 insertions(+), 36483 deletions(-)
More information about party at CRAN
Path: /cran/updated | permanent link
Author: Florian Camphausen, Matthias Kohl, Peter Ruckdeschel, Thomas
Stabla
Title: Object orientated implementation of distributions
Description: Object orientated implementation of distributions
Diff between distr versions 2.1 dated 2009-04-15 and 2.1.1 dated 2009-06-17
DESCRIPTION | 8 ++-- R/internalUtils.R | 1 inst/doc/.build.timestamp |only inst/doc/Rplots.pdf | 64 ++++++++++++++++---------------- inst/doc/newDistributions-AbscDist.eps |only inst/doc/newDistributions-AbscDist.pdf |only inst/doc/newDistributions-DiscrDist.eps |only inst/doc/newDistributions-DiscrDist.pdf |only inst/doc/newDistributions-exam1.eps |only inst/doc/newDistributions-exam1.pdf |only inst/doc/newDistributions.pdf |binary inst/doc/newDistributions.tex |only man/Unif-class.Rd | 20 +++++++--- 13 files changed, 51 insertions(+), 42 deletions(-)
More information about distr at CRAN
Path: /cran/updated | permanent link
Author: Karline Soetaert
Diff between diagram versions 1.3.1 dated 2009-02-20 and 1.4 dated 2009-06-17
More information about diagram at CRAN
Title: Functions for visualising simple graphs (networks), plotting
flow diagrams
Description: Visualises simple graphs (networks) based on a transition
matrix, utilities to plot flow diagrams, visualising webs,...
Support for the book "A practical guide to ecological modelling
- using R as a simulation platform" by Karline Soetaert and
Peter M.J. Herman (2009). Springer. Includes demo(flowchart),
demo(plotmat), demo(plotweb)
diagram-1.3.1/diagram/R/diagram.r |only
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diagram-1.4/diagram/inst/doc/diagram.pdf | 2208 ++++++++++++++---------------
diagram-1.4/diagram/inst/doc/vignettes.bib | 41
diagram-1.4/diagram/man/Rigaweb.Rd | 71
diagram-1.4/diagram/man/Takapotoweb.Rd | 75
diagram-1.4/diagram/man/Teasel.Rd | 63
diagram-1.4/diagram/man/bentarrow.Rd | 97 -
diagram-1.4/diagram/man/coordinates.Rd | 83 -
diagram-1.4/diagram/man/curvedarrow.Rd | 109 -
diagram-1.4/diagram/man/diagram.Rd | 36
diagram-1.4/diagram/man/openplotmat.Rd | 28
diagram-1.4/diagram/man/plotmat.Rd | 358 +++-
diagram-1.4/diagram/man/plotweb.Rd | 194 +-
diagram-1.4/diagram/man/segmentarrow.Rd | 120 +
diagram-1.4/diagram/man/selfarrow.Rd | 89 -
diagram-1.4/diagram/man/shadowbox.Rd | 105 -
diagram-1.4/diagram/man/splitarrow.Rd | 116 +
diagram-1.4/diagram/man/straightarrow.Rd | 82 -
diagram-1.4/diagram/man/textdiamond.Rd | 78 -
diagram-1.4/diagram/man/textellipse.Rd | 81 -
diagram-1.4/diagram/man/textempty.Rd | 49
diagram-1.4/diagram/man/texthexa.Rd | 78 -
diagram-1.4/diagram/man/textmulti.Rd | 77 -
diagram-1.4/diagram/man/textplain.Rd | 50
diagram-1.4/diagram/man/textrect.Rd | 73
diagram-1.4/diagram/man/textround.Rd | 79 -
diagram-1.4/diagram/man/treearrow.Rd | 121 +
50 files changed, 2844 insertions(+), 1848 deletions(-)
Path: /cran/updated | permanent link
Author: Jussi Klemela
Diff between delt versions 0.7.0 dated 2008-02-29 and 0.8.0 dated 2009-06-17
More information about delt at CRAN
Title: Estimation of multivariate densities with adaptive histograms
Description: The package implements methods for estimating multivariate
densities: adaptive histograms (greedy histograms and
CART-histograms), stagewise minimization, and bootstrap
aggregation are included in the package.
delt-0.7.0/delt/R/crosvali.R |only
delt-0.7.0/delt/R/dentseq.R |only
delt-0.7.0/delt/R/modetreeD.R |only
delt-0.7.0/delt/R/omaindmat.R |only
delt-0.7.0/delt/R/profaah.R |only
delt-0.7.0/delt/R/profavah.R |only
delt-0.7.0/delt/R/prunecv.R |only
delt-0.8.0/delt/DESCRIPTION | 22 +++++++++++-----------
delt-0.8.0/delt/R/allocolo.R | 15 ++++++++-------
delt-0.8.0/delt/R/denmean.R | 11 ++++++-----
delt-0.8.0/delt/R/densplitF.R | 11 +++++------
delt-0.8.0/delt/R/densplitR.R | 31 ++++++++++++++++---------------
delt-0.8.0/delt/R/findsplit.R | 11 ++++++-----
delt-0.8.0/delt/R/plotparti.R | 7 ++++---
delt-0.8.0/delt/man/delt-package.Rd | 8 ++++----
delt-0.8.0/delt/man/plotparti.Rd | 3 ++-
16 files changed, 62 insertions(+), 57 deletions(-)
Path: /cran/updated | permanent link
Author: Bill Venables
Title: Construction of factorial designs
Description: This small library contains a series of simple tools for
constructing and manipulating confounded and fractional
factorial designs.
Diff between conf.design versions 0.0-4 dated 2005-04-08 and 1.0 dated 2009-06-17
conf.design-0.0-4/conf.design/INDEX |only conf.design-0.0-4/conf.design/README.design |only conf.design-1.0/conf.design/DESCRIPTION | 24 ++++++++++++------------ conf.design-1.0/conf.design/LICENSE |only conf.design-1.0/conf.design/inst |only 5 files changed, 12 insertions(+), 12 deletions(-)
More information about conf.design at CRAN
Path: /cran/updated | permanent link
Author: Marc Schwartz
Diff between WriteXLS versions 1.7.1 dated 2009-05-29 and 1.8.0 dated 2009-06-17
More information about WriteXLS at CRAN
Title: Cross-platform Perl based R function to create Excel 2003 (XLS)
files
Description: Cross-platform perl based R function to create Excel (XLS)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it
contains or can be specified by the user.
DESCRIPTION | 10 +++++-----
R/WriteXLS.R | 14 ++++++++++++--
inst/Perl/WriteXLS.pl | 15 +++++++++++----
man/WriteXLS.Rd | 10 +++++++---
4 files changed, 35 insertions(+), 14 deletions(-)
Path: /cran/updated | permanent link
Author: Washington Junger
Diff between pgam versions 0.4.8 dated 2007-12-18 and 0.4.9 dated 2009-06-17
More information about pgam at CRAN
Title: Poisson-Gamma Additive Models.
Description: This work is an extension of the state space model for
Poisson count data, Poisson-Gamma model, towards a
semiparametric specification. Just like the generalized
additive models (GAM), cubic splines are used for covariate
smoothing. The semiparametric models are fitted by an iterative
process that combines maximization of likelihood and
backfitting algorithm.
pgam-0.4.8/pgam/src/Makevars |only
pgam-0.4.9/pgam/DESCRIPTION | 23 ++++++++++++++++-------
pgam-0.4.9/pgam/R/pgam.r | 6 +++---
pgam-0.4.9/pgam/R/zzz.r | 11 ++++++-----
pgam-0.4.9/pgam/man/AIC.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/aihrio.Rd | 2 +-
pgam-0.4.9/pgam/man/backfitting.Rd | 2 +-
pgam-0.4.9/pgam/man/bksmooth.Rd | 2 +-
pgam-0.4.9/pgam/man/coef.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/deviance.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/envelope.Rd | 1 -
pgam-0.4.9/pgam/man/fitted.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/g.Rd | 2 +-
pgam-0.4.9/pgam/man/logLik.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/pgam.filter.Rd | 2 +-
pgam-0.4.9/pgam/man/pgam.fit.Rd | 2 +-
pgam-0.4.9/pgam/man/pgam.likelihood.Rd | 2 +-
pgam-0.4.9/pgam/man/predict.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/residuals.pgam.Rd | 2 +-
pgam-0.4.9/pgam/man/summary.pgam.Rd | 2 +-
21 files changed, 41 insertions(+), 32 deletions(-)
Path: /cran/updated | permanent link
Author: Dai Feng and Luke Tierney
Title: Miscellaneous 3D Plots
Description: A collection of miscellaneous 3d plots, including
isosurfaces.
Diff between misc3d versions 0.6-1 dated 2008-05-28 and 0.6-3 dated 2009-06-17
DESCRIPTION | 8 ++++-- NAMESPACE | 2 - R/image3d.R | 4 +-- R/slices3d.R | 68 +++++++++++++++++++++++++++++++++++++++++++++---------- R/triangles.R | 13 +++++----- inst |only man/slices3d.Rd | 35 +++++++++++++++++++++------- man/triangles.Rd | 6 ++++ 8 files changed, 103 insertions(+), 33 deletions(-)
More information about misc3d at CRAN
Path: /cran/updated | permanent link
Author: Andrew Gelman
Diff between mi versions 0.07-4 dated 2009-06-14 and 0.08-01 dated 2009-06-17
More information about mi at CRAN
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
CHANGELOG | 13 +++++++++++++
DESCRIPTION | 6 +++---
R/AllInternal.R | 18 ++++++++++++++----
R/mi.R | 24 +++++++++++++++++++++---
R/mi.binary.R | 14 ++++++++++----
R/mi.continuous.R | 11 +++++++++--
R/mi.count.R | 33 +++++++++++++++++++++++----------
R/mi.info.R | 27 +++++++++++++--------------
R/mi.polr.R | 5 ++++-
R/mi.pooled.R | 9 ++++++---
man/mi.Rd | 3 +--
man/mi.binary.Rd | 6 +++---
man/mi.continuous.Rd | 2 +-
man/mi.count.Rd | 2 +-
14 files changed, 122 insertions(+), 51 deletions(-)
Path: /cran/updated | permanent link
Author: Peter Solymos
Title: Multivariate Data Handling in Ecology and Biogeography
Description: A framework package aimed to provide standardized
computational environment for specialist work via object
classes to represent the data coded by samples, taxa and
segments (i.e. subpopulations, repeated measures). It supports
easy processing of the data along with cross tabulation and
relational data tables for samples and taxa. An object of class
`mefa' is a project specific compendium of the data and can be
easily used in further analyses. Methods are provided for
extraction, aggregation, conversion, plotting, summary and
reporting of `mefa' objects. Reports can be generated in plain
text or LaTeX format. Vignette contains worked examples.
Diff between mefa versions 3.0-1 dated 2009-05-04 and 3.1-0 dated 2009-06-17
DESCRIPTION | 10 +++++----- R/as.data.frame.dist.R |only R/as.data.frame.mefa.R | 1 + R/cdrop.R |only R/dist2vec.R |only R/extract.mefa.R | 4 ++++ R/is.dist.R |only R/mat2list.R |only R/mfill.R |only R/rdrop.R |only R/report.mefa.R | 12 +++++------- R/vec2dist.R |only inst/ChangeLog | 25 ++++++++++++++++++++++++- inst/doc/mefa.pdf |binary man/aggregate.mefa.Rd | 6 +++--- man/as.mefa.Rd | 6 +++--- man/dist2vec.Rd |only man/dolina.Rd | 10 +++++----- man/fill.na.Rd | 6 +++--- man/inflate.Rd | 6 +++--- man/label.Rd | 6 +++--- man/mat2list.Rd |only man/mefa.Rd | 6 +++--- man/mefaCheck.Rd | 6 +++--- man/mefaCrosstab.Rd | 6 +++--- man/mefaNestedless.Rd | 6 +++--- man/mefaTables.Rd | 6 +++--- man/mefadocs.Rd | 2 +- man/mefalogo.Rd | 6 +++--- man/mefaweb.Rd | 6 +++--- man/melt.mefa.Rd | 6 +++--- man/plot.mefa.Rd | 6 +++--- man/qvector.Rd | 6 +++--- man/report.mefa.Rd | 12 ++++++------ man/stcs.Rd | 6 +++--- 35 files changed, 99 insertions(+), 73 deletions(-)
More information about mefa at CRAN
Path: /cran/updated | permanent link
More information about gPdtest at CRAN
Path: /cran/new | permanent link
Author: Andy Bunn
Title: Dendrochronology Program Library in R
Description: This package contains functions for performing some
standard tree-ring analyses.
Diff between dplR versions 1.1.8 dated 2009-03-24 and 1.1.9 dated 2009-06-17
DESCRIPTION | 6 +++--- R/read.rwl.R | 15 +++++++++++---- man/read.rwl.Rd | 6 +++++- 3 files changed, 19 insertions(+), 8 deletions(-)
More information about dplR at CRAN
Path: /cran/updated | permanent link
Author: Nardini, C. and Liu, Y-H.
Title: Performance of N-ary classification testing
Description: Evaluate the performance of classifying
Diff between Multiclasstesting versions 1.0.0 dated 2009-04-23 and 1.2.0 dated 2009-06-17
Multiclasstesting-1.0.0/Multiclasstesting/inst/doc/NclasstestViggnette.Rnw |only Multiclasstesting-1.0.0/Multiclasstesting/inst/doc/NclasstestViggnette.pdf |only Multiclasstesting-1.0.0/Multiclasstesting/inst/doc/NclasstestViggnette.tex |only Multiclasstesting-1.2.0/Multiclasstesting/DESCRIPTION | 8 - Multiclasstesting-1.2.0/Multiclasstesting/R/Nclasstest.R | 23 ++++- Multiclasstesting-1.2.0/Multiclasstesting/inst/doc/NclasstestVignette.Rnw |only Multiclasstesting-1.2.0/Multiclasstesting/inst/doc/NclasstestVignette.pdf |only Multiclasstesting-1.2.0/Multiclasstesting/man/Multiclasstesting-package.Rd | 6 - Multiclasstesting-1.2.0/Multiclasstesting/man/Nclasstest.Rd | 41 ++++++---- 9 files changed, 49 insertions(+), 29 deletions(-)
More information about Multiclasstesting at CRAN
Path: /cran/updated | permanent link
Author: Andrew O. Finley
Diff between MBA versions 0.0-5 dated 2009-03-05 and 0.0-6 dated 2009-06-17
More information about MBA at CRAN
Title: Multilevel B-spline Approximation
Description: Scattered data interpolation with Multilevel B-Splines
DESCRIPTION | 9
configure | 3242 ++++++++++++++++++++++++++++++++++--------------------------
2 files changed, 1896 insertions(+), 1355 deletions(-)
Path: /cran/updated | permanent link
Author: Dimitris Rizopoulos
Diff between JM versions 0.2-2 dated 2008-12-15 and 0.3-0 dated 2009-06-17
More information about JM at CRAN
Title: Joint Modelling of Longitudinal and Survival Data
Description: Shared parameter models for the joint modelling of
longitudinal and time-to-event data.
JM-0.2-2/JM/R/weibullGH.fit.R |only
JM-0.3-0/JM/DESCRIPTION | 29 ++---
JM-0.3-0/JM/R/HessLongPH.R | 2
JM-0.3-0/JM/R/HessSurvPH.R | 2
JM-0.3-0/JM/R/LogLik.chGH.R | 2
JM-0.3-0/JM/R/LogLik.chLaplace.R | 2
JM-0.3-0/JM/R/LogLik.phGH.R | 26 ++--
JM-0.3-0/JM/R/LogLik.piecewiseGH.R |only
JM-0.3-0/JM/R/LogLik.weibullAFTGH.R |only
JM-0.3-0/JM/R/LogLik.weibullGH.R | 15 +-
JM-0.3-0/JM/R/MI.fixed.times.R | 13 +-
JM-0.3-0/JM/R/MI.random.times.R | 14 +-
JM-0.3-0/JM/R/SclongCH.R | 2
JM-0.3-0/JM/R/Score.chGH.R | 2
JM-0.3-0/JM/R/Score.chLaplace.R | 2
JM-0.3-0/JM/R/Score.phGH.R | 62 ++++++----
JM-0.3-0/JM/R/Score.piecewiseGH.R |only
JM-0.3-0/JM/R/Score.weibullAFTGH.R |only
JM-0.3-0/JM/R/Score.weibullGH.R | 35 ++++--
JM-0.3-0/JM/R/ScsurvCH.R | 2
JM-0.3-0/JM/R/anova.jointModel.R | 4
JM-0.3-0/JM/R/cd.vec.R | 2
JM-0.3-0/JM/R/chGH.fit.R | 2
JM-0.3-0/JM/R/chLaplace.fit.R | 2
JM-0.3-0/JM/R/chol.transf.R | 2
JM-0.3-0/JM/R/coef.flexCPH.R | 2
JM-0.3-0/JM/R/coef.jointModel.R | 7 -
JM-0.3-0/JM/R/coef.weibull.frailty.R | 2
JM-0.3-0/JM/R/deriv.D.R | 2
JM-0.3-0/JM/R/dmvnorm.R | 2
JM-0.3-0/JM/R/dmvt.R | 2
JM-0.3-0/JM/R/fd.vec.R | 2
JM-0.3-0/JM/R/fitted.jointModel.R | 95 ++++++++++++++--
JM-0.3-0/JM/R/fixef.jointModel.R | 7 -
JM-0.3-0/JM/R/flexCPH.R | 2
JM-0.3-0/JM/R/flexCPH.fit.R | 2
JM-0.3-0/JM/R/fn.b.R | 2
JM-0.3-0/JM/R/gauher.R | 2
JM-0.3-0/JM/R/gaussKronrod.R |only
JM-0.3-0/JM/R/gr.b.R | 2
JM-0.3-0/JM/R/gr.longAFTWB.R |only
JM-0.3-0/JM/R/gr.longCH.R | 2
JM-0.3-0/JM/R/gr.longPC.R |only
JM-0.3-0/JM/R/gr.longPH.R | 27 +++-
JM-0.3-0/JM/R/gr.longWB.R | 19 ++-
JM-0.3-0/JM/R/gr.survAFTWB.R |only
JM-0.3-0/JM/R/gr.survCH.R | 2
JM-0.3-0/JM/R/gr.survPC.R |only
JM-0.3-0/JM/R/gr.survPH.R | 32 +++--
JM-0.3-0/JM/R/gr.survWB.R | 19 +--
JM-0.3-0/JM/R/initial.surv.R | 51 +++++++--
JM-0.3-0/JM/R/jacobian.R | 2
JM-0.3-0/JM/R/jacobian2.R | 2
JM-0.3-0/JM/R/jointModel.R | 120 ++++++++++++++++-----
JM-0.3-0/JM/R/logLik.flexCPH.R | 2
JM-0.3-0/JM/R/logLik.jointModel.R | 2
JM-0.3-0/JM/R/logLik.weibull.frailty.R | 2
JM-0.3-0/JM/R/logsurvCH.R | 2
JM-0.3-0/JM/R/nearPD.R | 2
JM-0.3-0/JM/R/opt.longAFTWB.R |only
JM-0.3-0/JM/R/opt.longPC.R |only
JM-0.3-0/JM/R/opt.longPH.R |only
JM-0.3-0/JM/R/opt.longWB.R | 10 +
JM-0.3-0/JM/R/opt.survAFTWB.R |only
JM-0.3-0/JM/R/opt.survCH.R | 2
JM-0.3-0/JM/R/opt.survPC.R |only
JM-0.3-0/JM/R/opt.survPH.R | 27 ++--
JM-0.3-0/JM/R/opt.survWB.R | 13 +-
JM-0.3-0/JM/R/phGH.fit.R | 143 ++++++++++++++-----------
JM-0.3-0/JM/R/piecewiseAFTGH.fit.R |only
JM-0.3-0/JM/R/piecewisePHGH.fit.R |only
JM-0.3-0/JM/R/plot.flexCPH.R | 2
JM-0.3-0/JM/R/plot.jointModel.R | 147 ++++++++++++++++++++------
JM-0.3-0/JM/R/posterior.b.R | 33 ++++-
JM-0.3-0/JM/R/predict.b.R | 2
JM-0.3-0/JM/R/predict.jointModel.R | 2
JM-0.3-0/JM/R/print.aov.jointModel.R | 2
JM-0.3-0/JM/R/print.flexCPH.R | 2
JM-0.3-0/JM/R/print.jointModel.R | 4
JM-0.3-0/JM/R/print.summary.flexCPH.R | 2
JM-0.3-0/JM/R/print.summary.jointModel.R | 20 ++-
JM-0.3-0/JM/R/print.summary.weibull.frailty.R | 2
JM-0.3-0/JM/R/print.weibull.frailty.R | 2
JM-0.3-0/JM/R/ranef.jointModel.R | 2
JM-0.3-0/JM/R/residuals.jointModel.R | 27 ++--
JM-0.3-0/JM/R/rmvt.R | 2
JM-0.3-0/JM/R/summary.flexCPH.R | 2
JM-0.3-0/JM/R/summary.jointModel.R | 13 +-
JM-0.3-0/JM/R/summary.weibull.frailty.R | 2
JM-0.3-0/JM/R/update.bCH.R | 2
JM-0.3-0/JM/R/vcov.flexCPH.R | 2
JM-0.3-0/JM/R/vcov.jointModel.R | 2
JM-0.3-0/JM/R/vcov.weibull.frailty.R | 2
JM-0.3-0/JM/R/weibull.frailty.R | 2
JM-0.3-0/JM/R/weibull.frailty.fit.R | 2
JM-0.3-0/JM/R/weibullAFTGH.fit.R |only
JM-0.3-0/JM/R/weibullPHGH.fit.R |only
JM-0.3-0/JM/data/aids.id.rda |binary
JM-0.3-0/JM/data/aids.rda |binary
JM-0.3-0/JM/data/pbc2.id.rda |binary
JM-0.3-0/JM/data/pbc2.rda |binary
JM-0.3-0/JM/data/prothro.rda |only
JM-0.3-0/JM/data/prothros.rda |only
JM-0.3-0/JM/inst/NEWS | 11 +
JM-0.3-0/JM/man/JM.Rd | 21 ++-
JM-0.3-0/JM/man/jointModel.Rd | 61 +++++-----
JM-0.3-0/JM/man/prothro.Rd |only
JM-0.3-0/JM/man/residuals.Rd | 6 -
108 files changed, 820 insertions(+), 393 deletions(-)
Path: /cran/updated | permanent link
Author: Nandita Mukhopadhyay
Diff between nplplot versions 4.2 dated 2009-04-16 and 4.3 dated 2009-06-16
More information about nplplot at CRAN
Title: Plotting non-parametric linkage results
Description: nplplot: Plots curves for non parametric linkage results
contained within a file or a table; nplplot.multi: wrapper
function for nplplot to graph multiple plot-data files, and
save these in PDF or postscript format; nplplot.old: the old
nplplot function that combined nplplot and nplplot.multi into
one function, please use the other two functions instead.
DESCRIPTION | 25 -
INDEX | 11
R/bedplot.R |only
R/genomeplot.R |only
R/nplplot.R | 752 ++++++++++++++++++++++++++++++------------------
R/nplplot.multi.R |only
R/nplplot.old.R |only
R/prepareplot.R |only
data |only
man/bedplot.Rd |only
man/genomeplot.Rd |only
man/lods1.Rd |only
man/lods2.Rd |only
man/nplplot-internal.Rd |only
man/nplplot.Rd | 255 ++++++++--------
man/nplplot.multi.Rd |only
man/nplplot.old.Rd |only
man/prepareplot.Rd |only
tests/Rallegro.07.R | 2
19 files changed, 629 insertions(+), 416 deletions(-)
Path: /cran/updated | permanent link
Author: Giovanni Petris
Diff between dlm versions 1.0-1 dated 2009-05-27 and 1.0-2 dated 2009-06-16
More information about dlm at CRAN
Title: Bayesian and Likelihood Analysis of Dynamic Linear Models
Description: Maximum likelihood, Kalman filtering and smoothing, and
Bayesian analysis of Normal linear State Space models, also
known as Dynamic Linear Models
DESCRIPTION | 8 ++++----
R/DLM.R | 2 +-
inst/doc/dlm.pdf |binary
man/dlmGibbsDIG.Rd | 16 ++++++++--------
4 files changed, 13 insertions(+), 13 deletions(-)
Path: /cran/updated | permanent link
Author: John Fox
Title: R Commander Plug-in for the survival Package
Description: This package provides an R Commander plug-in for the
survival package, with dialogs for Cox models, parametric
survival regression models, estimation of survival curves, and
testing for differences in survival curves, along with
data-management facilities and a variety of tests, diagnostics
and graphs.
Diff between RcmdrPlugin.survival versions 0.7-3 dated 2009-04-26 and 0.7-4 dated 2009-06-16
DESCRIPTION | 10 +++++----- inst/CHANGES | 4 ++++ inst/po/es |only man/RcmdrPlugin.survival-package.Rd | 4 ++-- po/R-es.po |only 5 files changed, 11 insertions(+), 7 deletions(-)
More information about RcmdrPlugin.survival at CRAN
Path: /cran/updated | permanent link
Author: Mathieu Vrac
Diff between CDFt versions 1.0 dated 2009-06-02 and 1.0.1 dated 2009-06-16
More information about CDFt at CRAN
Title: Statistical downscaling through CDF-transform
Description: This package proposes a statistical downscaling method for
cumulative distribution functions (CDF), as well as the
computation of the Cram\`er-von Mises statistics U, and the
Kolmogorov-Smirnov statistics KS.
DESCRIPTION | 6 +++---
R/CramerVonMisesTwoSamples.R | 3 ++-
2 files changed, 5 insertions(+), 4 deletions(-)
Path: /cran/updated | permanent link
Author: Fortran code by R. J. Renka. R functions by Albrecht Gebhardt
Diff between tripack versions 1.3-2 dated 2009-06-14 and 1.3-3 dated 2009-06-16
More information about tripack at CRAN
Title: Triangulation of irregularly spaced data
Description: A constrained two-dimensional Delaunay triangulation
package
tripack-1.3-2/tripack/src/awvor.f |only
tripack-1.3-2/tripack/src/func.f |only
tripack-1.3-3/tripack/ChangeLog | 15 ++++++-------
tripack-1.3-3/tripack/DESCRIPTION | 8 +++---
tripack-1.3-3/tripack/man/triangles.Rd | 2 -
tripack-1.3-3/tripack/man/tritest.Rd | 2 -
tripack-1.3-3/tripack/src/init.c | 38 ++++++++++++++++-----------------
tripack-1.3-3/tripack/work |only
8 files changed, 33 insertions(+), 32 deletions(-)
Path: /cran/updated | permanent link
Author: Jon Clayden
Diff between tractor.base versions 1.0.5 dated 2009-05-14 and 1.1.0 dated 2009-06-16
More information about tractor.base at CRAN
Title: Basic functions for the TractoR (tractography with R) bundle
Description: The tractor.base package consists of functions for working
with magnetic resonance images. It can read and write image
files stored in Analyze, NIfTI and DICOM formats (DICOM support
is read only), generate images for use as regions of interest,
and manipulate and visualise images.
DESCRIPTION | 8 +--
R/dicom.R | 12 +++++
R/misc.R | 92 ---------------------------------------------
R/output.R |only
man/datatypes.Rd | 2
man/info.neighbourhood.Rd | 2
man/newMriImageFromFile.Rd | 2
7 files changed, 18 insertions(+), 100 deletions(-)
Path: /cran/updated | permanent link
Author: Tore Opsahl
Title: tnet: Software for Analysis of Weighted, Two-mode, and
Longitudinal networks
Description: R package to analyse weighted, two-mode, and longitudinal
networks.
Diff between tnet versions 0.0.6 dated 2009-06-03 and 0.1.0 dated 2009-06-16
tnet-0.0.6/tnet/R/weighted_richclub.R |only tnet-0.0.6/tnet/data/Freeman_EIES_3.Sym_sum.rdata |only tnet-0.0.6/tnet/data/clustering_sample1.rdata |only tnet-0.0.6/tnet/data/clustering_sample2.rdata |only tnet-0.0.6/tnet/man/Freeman_EIES_3.Sym_sum.Rd |only tnet-0.0.6/tnet/man/OnlineComm.f1000.Rd |only tnet-0.0.6/tnet/man/sample.network.1.Rd |only tnet-0.0.6/tnet/man/sample.network.2.Rd |only tnet-0.0.6/tnet/man/weighted_richclub.Rd |only tnet-0.1.0/tnet/DESCRIPTION | 16 ++--- tnet-0.1.0/tnet/LICENSE | 2 tnet-0.1.0/tnet/R/projecting_tm.R |only tnet-0.1.0/tnet/R/rg_reshuffling_tm.R |only tnet-0.1.0/tnet/R/weighted_richclub_tm.R |only tnet-0.1.0/tnet/R/weighted_richclub_w.R |only tnet-0.1.0/tnet/data/Cross.Parker.Consulting.RData |only tnet-0.1.0/tnet/data/Cross.Parker.Manufacturing.RData |only tnet-0.1.0/tnet/data/Freemans.EIES.RData |only tnet-0.1.0/tnet/data/Newman.Condmat.95.99.RData |only tnet-0.1.0/tnet/data/OnlineComm.f1000.rdata |binary tnet-0.1.0/tnet/data/USairport.n500.RData |only tnet-0.1.0/tnet/data/celegans.n306.RData |only tnet-0.1.0/tnet/inst/CITATION | 26 ++++---- tnet-0.1.0/tnet/man/Cross.Parker.Consulting.net.info.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Consulting.net.value.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Consulting.node.gender.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Consulting.node.location.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Consulting.node.orglevel.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Consulting.node.region.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Manufacturing.net.aware.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Manufacturing.net.info.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Manufacturing.node.location.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Manufacturing.node.orglevel.Rd |only tnet-0.1.0/tnet/man/Cross.Parker.Manufacturing.node.tenure.Rd |only tnet-0.1.0/tnet/man/Freemans.EIES.net.1.n48.Rd |only tnet-0.1.0/tnet/man/Freemans.EIES.net.2.n48.Rd |only tnet-0.1.0/tnet/man/Freemans.EIES.net.3.n32.Rd |only tnet-0.1.0/tnet/man/Freemans.EIES.node.Citations.n32.Rd |only tnet-0.1.0/tnet/man/Freemans.EIES.node.Discipline.n32.Rd |only tnet-0.1.0/tnet/man/Newman.Condmat.95.99.net.1mode.wNewman.Rd |only tnet-0.1.0/tnet/man/Newman.Condmat.95.99.net.2mode.Rd |only tnet-0.1.0/tnet/man/OnlineComm.f1000.lnet.Rd |only tnet-0.1.0/tnet/man/USairport.n500.net.Rd |only tnet-0.1.0/tnet/man/betweenness_w.Rd | 11 +-- tnet-0.1.0/tnet/man/celegans.n306.net.Rd |only tnet-0.1.0/tnet/man/closeness_w.Rd | 15 ++-- tnet-0.1.0/tnet/man/clustering_w.Rd | 9 +- tnet-0.1.0/tnet/man/clustering_w_barrat.Rd | 10 +-- tnet-0.1.0/tnet/man/degree_w.Rd | 9 +- tnet-0.1.0/tnet/man/dichotomise.Rd | 4 - tnet-0.1.0/tnet/man/distance_w.Rd | 7 -- tnet-0.1.0/tnet/man/projecting_tm.Rd |only tnet-0.1.0/tnet/man/rg_reshuffling_tm.Rd |only tnet-0.1.0/tnet/man/rg_reshuffling_w.Rd | 6 + tnet-0.1.0/tnet/man/rg_w.Rd | 4 - tnet-0.1.0/tnet/man/shrink_to_weighted_network.Rd | 8 -- tnet-0.1.0/tnet/man/symmetrise.Rd | 8 -- tnet-0.1.0/tnet/man/tnet-package.Rd | 32 ++++------ tnet-0.1.0/tnet/man/weighted_richclub_tm.Rd |only tnet-0.1.0/tnet/man/weighted_richclub_w.Rd |only 60 files changed, 82 insertions(+), 85 deletions(-)
More information about tnet at CRAN
Path: /cran/updated | permanent link
Author: Owen Jones, Robert Maillardet, Andrew Robinson, Olga Borovkova,
and Steven Carnie
Title: Functions and Datasets for "An Introduction to Scientific
Programming and Simulation, Using R".
Description: This package provides functions and datasets from the book
"An Introduction to Scientific Programming and Simulation,
Using R".
Diff between spuRs versions 1.0.2 dated 2009-03-19 and 1.0.3 dated 2009-06-16
DESCRIPTION | 8 ++++---- inst/resources/errata.pdf |only inst/resources/scripts/linesearch.r | 2 +- man/spuRs-package.Rd | 8 ++++---- 4 files changed, 9 insertions(+), 9 deletions(-)
More information about spuRs at CRAN
Path: /cran/updated | permanent link
Author: Adrian Baddeley
Diff between spatstat versions 1.15-3 dated 2009-05-14 and 1.15-4 dated 2009-06-16
More information about spatstat at CRAN
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Contains
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, and pixel images. Point
process models can be fitted to point pattern data. Cluster
type models are fitted by the method of minimum contrast. Very
general Gibbs point process models can be fitted to point
pattern data using a function ppm similar to lm or glm. Models
may include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated
automatically. Also provides facilities for formal inference
(such as chi-squared tests) and model diagnostics (including
simulation envelopes, residuals, residual plots and Q-Q plots).
spatstat-1.15-3/spatstat/R/subsetget.ppp.R |only
spatstat-1.15-3/spatstat/man/subset.fasp.Rd |only
spatstat-1.15-3/spatstat/man/subset.fv.Rd |only
spatstat-1.15-3/spatstat/man/subset.im.Rd |only
spatstat-1.15-3/spatstat/man/subset.listof.Rd |only
spatstat-1.15-3/spatstat/man/subset.ppp.Rd |only
spatstat-1.15-3/spatstat/man/subset.psp.Rd |only
spatstat-1.15-3/spatstat/man/subset.quad.Rd |only
spatstat-1.15-3/spatstat/man/subset.splitppp.Rd |only
spatstat-1.15-3/spatstat/man/subset.tess.Rd |only
spatstat-1.15-3/spatstat/man/subsetget.im.Rd |only
spatstat-1.15-4/spatstat/.Rbuildindex.5299 |only
spatstat-1.15-4/spatstat/.Rbuildindex.6375 |only
spatstat-1.15-4/spatstat/DESCRIPTION | 8
spatstat-1.15-4/spatstat/INDEX | 11
spatstat-1.15-4/spatstat/R/Fest.S | 2
spatstat-1.15-4/spatstat/R/First.R | 4
spatstat-1.15-4/spatstat/R/Iest.R | 4
spatstat-1.15-4/spatstat/R/Jest.S | 4
spatstat-1.15-4/spatstat/R/Kest.S | 46 +
spatstat-1.15-4/spatstat/R/Kinhom.S | 17
spatstat-1.15-4/spatstat/R/Kmulti.S | 29 -
spatstat-1.15-4/spatstat/R/Kmulti.inhom.R | 41 -
spatstat-1.15-4/spatstat/R/connected.R | 4
spatstat-1.15-4/spatstat/R/distbdry.S | 100 ++-
spatstat-1.15-4/spatstat/R/envelope.R | 28
spatstat-1.15-4/spatstat/R/fasp.R | 5
spatstat-1.15-4/spatstat/R/fv.R | 6
spatstat-1.15-4/spatstat/R/images.R | 8
spatstat-1.15-4/spatstat/R/localK.R | 13
spatstat-1.15-4/spatstat/R/markcorr.R | 32 -
spatstat-1.15-4/spatstat/R/nearestsegment.R | 16
spatstat-1.15-4/spatstat/R/pcf.R | 8
spatstat-1.15-4/spatstat/R/ppmclass.R | 14
spatstat-1.15-4/spatstat/R/ppp.S | 3
spatstat-1.15-4/spatstat/R/psp.R | 3
spatstat-1.15-4/spatstat/R/replace.ppp.R |only
spatstat-1.15-4/spatstat/R/wingeom.S | 11
spatstat-1.15-4/spatstat/R/xypolygon.S | 46 +
spatstat-1.15-4/spatstat/demo/spatstat.R | 35 -
spatstat-1.15-4/spatstat/inst/doc/shapefiles.pdf | 662 +++++++++++------------
spatstat-1.15-4/spatstat/man/00spatstat.Rd | 4
spatstat-1.15-4/spatstat/man/Extract.fasp.Rd |only
spatstat-1.15-4/spatstat/man/Extract.fv.Rd |only
spatstat-1.15-4/spatstat/man/Extract.im.Rd |only
spatstat-1.15-4/spatstat/man/Extract.listof.Rd |only
spatstat-1.15-4/spatstat/man/Extract.ppp.Rd |only
spatstat-1.15-4/spatstat/man/Extract.psp.Rd |only
spatstat-1.15-4/spatstat/man/Extract.quad.Rd |only
spatstat-1.15-4/spatstat/man/Extract.splitppp.Rd |only
spatstat-1.15-4/spatstat/man/Extract.tess.Rd |only
spatstat-1.15-4/spatstat/man/Fest.Rd | 3
spatstat-1.15-4/spatstat/man/Iest.Rd | 3
spatstat-1.15-4/spatstat/man/Jest.Rd | 3
spatstat-1.15-4/spatstat/man/Kcross.Rd | 3
spatstat-1.15-4/spatstat/man/Kcross.inhom.Rd | 3
spatstat-1.15-4/spatstat/man/Kdot.Rd | 3
spatstat-1.15-4/spatstat/man/Kdot.inhom.Rd | 3
spatstat-1.15-4/spatstat/man/Kest.Rd | 10
spatstat-1.15-4/spatstat/man/Kinhom.Rd | 3
spatstat-1.15-4/spatstat/man/Kmulti.Rd | 3
spatstat-1.15-4/spatstat/man/Replace.im.Rd |only
spatstat-1.15-4/spatstat/man/closing.owin.Rd | 9
spatstat-1.15-4/spatstat/man/connected.Rd | 2
spatstat-1.15-4/spatstat/man/dilate.owin.Rd | 24
spatstat-1.15-4/spatstat/man/envelope.Rd | 3
spatstat-1.15-4/spatstat/man/erode.owin.Rd | 29 -
spatstat-1.15-4/spatstat/man/internal.Rd | 6
spatstat-1.15-4/spatstat/man/localK.Rd | 5
spatstat-1.15-4/spatstat/man/markcorr.Rd | 3
spatstat-1.15-4/spatstat/man/opening.owin.Rd | 9
spatstat-1.15-4/spatstat/man/ppp.object.Rd | 1
spatstat-1.15-4/spatstat/man/psp.object.Rd | 4
spatstat-1.15-4/spatstat/man/simplify.owin.Rd |only
spatstat-1.15-4/spatstat/man/smooth.ppp.Rd | 19
75 files changed, 763 insertions(+), 552 deletions(-)
Path: /cran/updated | permanent link
Author: Simon Urbanek
Diff between rJava versions 0.6-2 dated 2009-01-26 and 0.6-3 dated 2009-06-16
More information about rJava at CRAN
Title: Low-level R to Java interface
Description: Low-level interface to Java VM very much like .C/.Call and
friends. Allows creation of objects, calling methods and
accessing fields.
DESCRIPTION | 8 ++-
NEWS | 8 +++
R/loader.R | 6 +-
jri/NEWS | 19 ++++++++
jri/REXP.java | 11 ++++
jri/Rengine.java | 102 ++++++++++++++++++++++++++++++++++++++++++---
jri/configure | 12 ++++-
jri/configure.ac | 12 ++++-
jri/src/Rengine.c | 102 +++++++++++++++++++++++++++++++++++++++++++++
jri/src/jri.c | 52 +++++++++++++++++++++++
jri/src/jri.h | 12 ++++-
man/jpackage.Rd | 30 +++++++------
src/Rglue.c | 120 +++++++++++++++++++++++++++++++++---------------------
src/fields.c | 21 +++++----
src/rJava.h | 13 ++++-
15 files changed, 436 insertions(+), 92 deletions(-)
Path: /cran/updated | permanent link
Author: Daniel B. Wright
Title: Wright & London's Modern Regression Techniques
Description: Datasets and functions from Wright and London's Modern
Regression Techniques
Diff between mrt versions 0.1 dated 2009-06-08 and 0.2 dated 2009-06-16
DESCRIPTION | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-)
More information about mrt at CRAN
Path: /cran/updated | permanent link
Author: Jussi Klemela
Diff between denpro versions 0.8.4 dated 2008-02-19 and 0.9.0 dated 2009-06-16
More information about denpro at CRAN
Title: Visualization of multivariate, functions, sets, and data
Description: The package provides tools to (1) visualize multivariate
density functions and density estimates with level set trees,
(2) visualize level sets with shape trees, (3) visualize
multivariate data with tail trees, (4) visualize scales of
multivariate density estimates with mode graphs and branching
maps, and (5) visualize anisotropic spread with 2D volume
functions and 2D probability conetent functions. Level set
trees visualize mode structure, shape trees visualize shapes of
level sets of unimodal densities, and tail trees visualize
connected data sets. The kernel estimator is implemented but
the package may be applied for visualizing other density
estimates.
DESCRIPTION | 43 +++++++--------
R/allokoi.new.R |only
R/denpro.R |only
R/dist.func.R | 6 +-
R/draw.kern.R | 5 +
R/draw.levset.R | 6 +-
R/draw.pcf.R | 37 +++++++------
R/graph.matrix.R | 4 -
R/graph.matrix.level.R | 14 ++---
R/histo1d.R | 39 +++++++++++---
R/leafsfirst.lst.R | 19 ++++++
R/leafsfirst.visu.R | 6 +-
R/lst2xy.R | 5 +
R/lstseq.kern.R | 4 -
R/nn.radit.R | 4 +
R/paraclus.R | 21 ++++---
R/paracoor.R | 10 ++-
R/pcf.func.R | 70 +++++++++++++++++++++----
R/pcf.histo.R | 7 +-
R/pcf.kern.R | 136 +++++++++++++++++++++++++++++++++++++++++++++----
R/pcf.kernC.R |only
R/plot.kernscale.R | 9 +--
R/plotbary.R | 17 +++---
R/plotmodet.R | 7 +-
R/plotprof.R | 12 ++--
R/plottree.R | 22 ++++++-
R/plotvecs.R | 5 +
R/plotvolu.R | 18 ++++--
R/plotvolu.new.R |only
R/pp.plot.R | 6 +-
R/preprocess.R |only
R/profkernR.R | 2
R/qq.plot.R | 6 +-
R/siborder.new.R |only
R/sim.data.R | 4 -
R/sim.penta4d.R | 4 -
R/stseq.R | 4 -
R/touch.R | 14 ++---
R/tree.segme.R | 9 ++-
R/treedisc.R | 3 -
man/denpro-package.Rd | 15 ++---
man/draw.levset.Rd | 7 ++
man/draw.pcf.Rd | 2
man/lstseq.kern.Rd | 4 +
man/paracoor.Rd | 8 ++
man/pcf.kern.Rd | 42 +++++++++++----
man/plotbary.Rd | 35 +++++++-----
man/plotmodet.Rd | 7 ++
man/plottree.Rd | 10 ++-
man/plotvolu.Rd | 16 +++--
man/scaletable.Rd | 8 +-
man/sim.data.Rd | 4 +
man/stseq.Rd | 9 +--
man/tree.segme.Rd | 4 -
54 files changed, 536 insertions(+), 213 deletions(-)
Path: /cran/updated | permanent link
Author: Rasmus E. Benestad
Diff between clim.pact versions 2.2-37 dated 2009-06-14 and 2.2-38 dated 2009-06-16
More information about clim.pact at CRAN
Title: Climate analysis and empirical-statistical downscaling (ESD)
package for monthly and daily data.
Description: The package contains R functions for retrieving data,
making climate analysis and downscaling of monthly mean and
daily mean global climate scenarios. (Windows-users may need to
obtain the 'ncdf' package from URL
'http://www.stats.ox.ac.uk/pub/RWin/' to get clim.pact to
work). The package is also described in the book
'Empirical-Statistical Downscaling
(http://www.worldscibooks.com/environsci/6908.html)
DESCRIPTION | 8 ++++----
R/eof.R | 41 +++++++++++++++++++++++++----------------
2 files changed, 29 insertions(+), 20 deletions(-)
Path: /cran/updated | permanent link
Author: S original
Diff between boot versions 1.2-36 dated 2009-03-12 and 1.2-37 dated 2009-06-16
More information about boot at CRAN
Title: Bootstrap R (S-Plus) Functions (Canty)
Description: functions and datasets for bootstrapping from the book
"Bootstrap Methods and Their Applications" by A. C. Davison and
D. V. Hinkley (1997, CUP).
ChangeLog | 7 ++++++-
DESCRIPTION | 8 ++++----
inst/po/en@quot/LC_MESSAGES/R-boot.mo |binary
inst/po/fr/LC_MESSAGES/R-boot.mo |binary
inst/po/ru/LC_MESSAGES/R-boot.mo |binary
man/censboot.Rd | 1 +
po/R-boot.pot | 14 ++++++++++----
po/R-en@quot.po | 27 ++++++++++++++++++---------
po/R-fr.po | 22 +++++++++++++++-------
po/R-ru.po | 28 ++++++++++++++++++----------
10 files changed, 72 insertions(+), 35 deletions(-)
Path: /cran/updated | permanent link
Author: Peter Wolf, Uni Bielefeld
Title: Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, and
some slider functions
Description: set of functions for drawing some special plots: stem.leaf
plots a stem and leaf plot bagplot plots a bagplot faces plots
chernoff faces spin3R for an inspection of a 3-dim point cloud
slider functions for interactive graphics
Diff between aplpack versions 1.1.1 dated 2007-09-03 and 1.2.1 dated 2009-06-16
aplpack-1.1.1/aplpack/man/aplpack.package.Rd |only aplpack-1.2.1/aplpack/DESCRIPTION | 29 - aplpack-1.2.1/aplpack/NAMESPACE |only aplpack-1.2.1/aplpack/R/bagplot.R | 13 aplpack-1.2.1/aplpack/R/faces.R | 127 +++++ aplpack-1.2.1/aplpack/R/plot.faces.R | 73 ++- aplpack-1.2.1/aplpack/R/slider.R |only aplpack-1.2.1/aplpack/R/slider.bootstrap.lm.plot.R |only aplpack-1.2.1/aplpack/R/slider.brush.pairs.R |only aplpack-1.2.1/aplpack/R/slider.brush.plot.xy.R |only aplpack-1.2.1/aplpack/R/slider.density.R |only aplpack-1.2.1/aplpack/R/slider.hist.R |only aplpack-1.2.1/aplpack/R/slider.lowess.plot.R |only aplpack-1.2.1/aplpack/R/slider.smooth.plot.ts.R |only aplpack-1.2.1/aplpack/R/slider.split.plot.ts.R |only aplpack-1.2.1/aplpack/R/slider.zoom.plot.ts.R |only aplpack-1.2.1/aplpack/R/stem.leaf.R | 45 +- aplpack-1.2.1/aplpack/inst/doc |only aplpack-1.2.1/aplpack/inst/src/bagplot.rev | 48 ++ aplpack-1.2.1/aplpack/inst/src/doaplpack | 86 +++- aplpack-1.2.1/aplpack/inst/src/faces.rev | 386 ++++++++++++++---- aplpack-1.2.1/aplpack/inst/src/ms.rev | 219 +++++++++- aplpack-1.2.1/aplpack/inst/src/sliderfns.rev |only aplpack-1.2.1/aplpack/man/faces.Rd | 50 ++ aplpack-1.2.1/aplpack/man/slider.Rd |only aplpack-1.2.1/aplpack/man/slider.bootstrap.lm.plot.Rd |only aplpack-1.2.1/aplpack/man/slider.brush.Rd |only aplpack-1.2.1/aplpack/man/slider.hist.Rd |only aplpack-1.2.1/aplpack/man/slider.lowess.plot.Rd |only aplpack-1.2.1/aplpack/man/slider.smooth.plot.ts.Rd |only aplpack-1.2.1/aplpack/man/slider.split.plot.ts.Rd |only aplpack-1.2.1/aplpack/man/slider.zoom.plot.ts.Rd |only aplpack-1.2.1/aplpack/man/stem.leaf.Rd | 2 33 files changed, 898 insertions(+), 180 deletions(-)
More information about aplpack at CRAN
Path: /cran/updated | permanent link
Author: Thomas W. Yee
Diff between VGAM versions 0.7-8 dated 2009-02-05 and 0.7-9 dated 2009-06-16
More information about VGAM at CRAN
Title: Vector Generalized Linear and Additive Models
Description: Vector generalized linear and additive models, and
associated models (Reduced-Rank VGLMs, Quadratic RR-VGLMs,
Reduced-Rank VGAMs). This package fits many models and
distribution by maximum likelihood estimation (MLE) or
penalized MLE. Also fits constrained ordination models in
ecology.
VGAM-0.7-8/VGAM/R/build.terms.s |only
VGAM-0.7-8/VGAM/R/print.summary.others.q |only
VGAM-0.7-8/VGAM/R/summary.others.q |only
VGAM-0.7-8/VGAM/man/alsqreg.Rd |only
VGAM-0.7-8/VGAM/man/dzeta.Rd |only
VGAM-0.7-9/VGAM/DESCRIPTION | 20
VGAM-0.7-9/VGAM/NAMESPACE | 80
VGAM-0.7-9/VGAM/NEWS | 61
VGAM-0.7-9/VGAM/R/aamethods.q | 300 --
VGAM-0.7-9/VGAM/R/bAIC.q | 53
VGAM-0.7-9/VGAM/R/build.terms.vlm.q | 74
VGAM-0.7-9/VGAM/R/calibrate.q | 14
VGAM-0.7-9/VGAM/R/cao.R | 8
VGAM-0.7-9/VGAM/R/cao.fit.q | 226 -
VGAM-0.7-9/VGAM/R/coef.vlm.q | 158 -
VGAM-0.7-9/VGAM/R/cqo.R | 4
VGAM-0.7-9/VGAM/R/cqo.fit.q | 57
VGAM-0.7-9/VGAM/R/family.aunivariate.q | 231 +
VGAM-0.7-9/VGAM/R/family.basics.q | 131 -
VGAM-0.7-9/VGAM/R/family.binomial.q | 502 ++-
VGAM-0.7-9/VGAM/R/family.bivariate.q | 246 -
VGAM-0.7-9/VGAM/R/family.categorical.q | 435 ++-
VGAM-0.7-9/VGAM/R/family.censored.q | 10
VGAM-0.7-9/VGAM/R/family.circular.q | 64
VGAM-0.7-9/VGAM/R/family.extremes.q | 1350 ++++------
VGAM-0.7-9/VGAM/R/family.fishing.q | 4
VGAM-0.7-9/VGAM/R/family.functions.q | 7
VGAM-0.7-9/VGAM/R/family.genetic.q | 808 +++---
VGAM-0.7-9/VGAM/R/family.glmgam.q | 177 -
VGAM-0.7-9/VGAM/R/family.mixture.q | 36
VGAM-0.7-9/VGAM/R/family.nonlinear.q | 12
VGAM-0.7-9/VGAM/R/family.normal.q | 265 +-
VGAM-0.7-9/VGAM/R/family.positive.q | 68
VGAM-0.7-9/VGAM/R/family.qreg.q | 496 +++
VGAM-0.7-9/VGAM/R/family.rcqo.q | 10
VGAM-0.7-9/VGAM/R/family.rrr.q | 887 +++---
VGAM-0.7-9/VGAM/R/family.survival.q | 82
VGAM-0.7-9/VGAM/R/family.ts.q | 18
VGAM-0.7-9/VGAM/R/family.univariate.q | 2961 ++++++++++++++---------
VGAM-0.7-9/VGAM/R/family.zeroinf.q | 184 -
VGAM-0.7-9/VGAM/R/formula.vlm.q |only
VGAM-0.7-9/VGAM/R/links.q | 18
VGAM-0.7-9/VGAM/R/model.matrix.vglm.q | 415 +--
VGAM-0.7-9/VGAM/R/plot.vglm.q | 608 +---
VGAM-0.7-9/VGAM/R/predict.vgam.q | 21
VGAM-0.7-9/VGAM/R/predict.vglm.q | 229 -
VGAM-0.7-9/VGAM/R/predict.vlm.q | 380 +-
VGAM-0.7-9/VGAM/R/qrrvglm.control.q | 32
VGAM-0.7-9/VGAM/R/qtplot.q | 18
VGAM-0.7-9/VGAM/R/residuals.vlm.q | 75
VGAM-0.7-9/VGAM/R/rrvglm.R | 24
VGAM-0.7-9/VGAM/R/rrvglm.control.q | 22
VGAM-0.7-9/VGAM/R/rrvglm.fit.q | 168 -
VGAM-0.7-9/VGAM/R/s.vam.q | 45
VGAM-0.7-9/VGAM/R/summary.vgam.q | 6
VGAM-0.7-9/VGAM/R/summary.vglm.q | 26
VGAM-0.7-9/VGAM/R/summary.vlm.q | 24
VGAM-0.7-9/VGAM/R/uqo.R | 24
VGAM-0.7-9/VGAM/R/vgam.R | 12
VGAM-0.7-9/VGAM/R/vgam.control.q | 19
VGAM-0.7-9/VGAM/R/vgam.fit.q | 100
VGAM-0.7-9/VGAM/R/vgam.match.q | 2
VGAM-0.7-9/VGAM/R/vglm.R | 10
VGAM-0.7-9/VGAM/R/vglm.control.q | 28
VGAM-0.7-9/VGAM/R/vglm.fit.q | 160 -
VGAM-0.7-9/VGAM/R/vlm.R | 30
VGAM-0.7-9/VGAM/R/vlm.wfit.q | 76
VGAM-0.7-9/VGAM/R/vsmooth.spline.q | 44
VGAM-0.7-9/VGAM/data/olympic.txt |only
VGAM-0.7-9/VGAM/man/AA.Aa.aa.Rd | 15
VGAM-0.7-9/VGAM/man/AB.Ab.aB.ab.Rd | 5
VGAM-0.7-9/VGAM/man/AB.Ab.aB.ab2.Rd | 7
VGAM-0.7-9/VGAM/man/ABO.Rd | 32
VGAM-0.7-9/VGAM/man/AICvlm.Rd | 13
VGAM-0.7-9/VGAM/man/BratUC.Rd | 2
VGAM-0.7-9/VGAM/man/Coef.rrvglm-class.Rd | 1
VGAM-0.7-9/VGAM/man/Coef.rrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/CommonVGAMffArguments.Rd | 30
VGAM-0.7-9/VGAM/man/DagumUC.Rd | 8
VGAM-0.7-9/VGAM/man/DeLury.Rd | 4
VGAM-0.7-9/VGAM/man/FiskUC.Rd | 18
VGAM-0.7-9/VGAM/man/G1G2G3.Rd | 12
VGAM-0.7-9/VGAM/man/Inv.gaussian.Rd | 11
VGAM-0.7-9/VGAM/man/InvlomaxUC.Rd | 14
VGAM-0.7-9/VGAM/man/InvparalogisticUC.Rd | 14
VGAM-0.7-9/VGAM/man/Links.Rd | 1
VGAM-0.7-9/VGAM/man/LomaxUC.Rd | 14
VGAM-0.7-9/VGAM/man/Max.Rd | 1
VGAM-0.7-9/VGAM/man/MaxwellUC.Rd | 8
VGAM-0.7-9/VGAM/man/Opt.Rd | 1
VGAM-0.7-9/VGAM/man/ParalogisticUC.Rd | 14
VGAM-0.7-9/VGAM/man/Pareto.Rd | 8
VGAM-0.7-9/VGAM/man/ParetoIVUC.Rd | 12
VGAM-0.7-9/VGAM/man/RayleighUC.Rd | 8
VGAM-0.7-9/VGAM/man/SinmadUC.Rd | 14
VGAM-0.7-9/VGAM/man/Tol.Rd | 1
VGAM-0.7-9/VGAM/man/VGAM-package.Rd | 19
VGAM-0.7-9/VGAM/man/acat.Rd | 1
VGAM-0.7-9/VGAM/man/alaplace3.Rd | 58
VGAM-0.7-9/VGAM/man/alaplaceUC.Rd | 61
VGAM-0.7-9/VGAM/man/amlbinomial.Rd | 6
VGAM-0.7-9/VGAM/man/amlexponential.Rd | 6
VGAM-0.7-9/VGAM/man/amlnormal.Rd |only
VGAM-0.7-9/VGAM/man/amlpoisson.Rd | 6
VGAM-0.7-9/VGAM/man/auuc.Rd | 3
VGAM-0.7-9/VGAM/man/benini.Rd | 6
VGAM-0.7-9/VGAM/man/beniniUC.Rd | 8
VGAM-0.7-9/VGAM/man/beta.ab.Rd | 2
VGAM-0.7-9/VGAM/man/betabin.ab.Rd | 24
VGAM-0.7-9/VGAM/man/betabinUC.Rd | 8
VGAM-0.7-9/VGAM/man/betabinomial.Rd | 39
VGAM-0.7-9/VGAM/man/betaprime.Rd | 2
VGAM-0.7-9/VGAM/man/bilogis4UC.Rd | 8
VGAM-0.7-9/VGAM/man/bilogistic4.Rd | 4
VGAM-0.7-9/VGAM/man/binom2.or.Rd | 12
VGAM-0.7-9/VGAM/man/binom2.rho.Rd | 1
VGAM-0.7-9/VGAM/man/binomialff.Rd | 16
VGAM-0.7-9/VGAM/man/bisa.Rd | 2
VGAM-0.7-9/VGAM/man/bisaUC.Rd | 2
VGAM-0.7-9/VGAM/man/bminz.Rd | 7
VGAM-0.7-9/VGAM/man/bortUC.Rd | 13
VGAM-0.7-9/VGAM/man/calibrate.Rd | 1
VGAM-0.7-9/VGAM/man/calibrate.qrrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/calibrate.qrrvglm.control.Rd | 1
VGAM-0.7-9/VGAM/man/cao.Rd | 17
VGAM-0.7-9/VGAM/man/cao.control.Rd | 1
VGAM-0.7-9/VGAM/man/cardUC.Rd | 8
VGAM-0.7-9/VGAM/man/cauchy.Rd | 18
VGAM-0.7-9/VGAM/man/ccoef.Rd | 1
VGAM-0.7-9/VGAM/man/cdf.lmscreg.Rd | 9
VGAM-0.7-9/VGAM/man/cenpoisson.Rd | 2
VGAM-0.7-9/VGAM/man/cgumbel.Rd | 3
VGAM-0.7-9/VGAM/man/chest.Rd | 3
VGAM-0.7-9/VGAM/man/coalminers.Rd | 3
VGAM-0.7-9/VGAM/man/constraints.Rd | 11
VGAM-0.7-9/VGAM/man/cqo.Rd | 84
VGAM-0.7-9/VGAM/man/cratio.Rd | 1
VGAM-0.7-9/VGAM/man/cumulative.Rd | 132 -
VGAM-0.7-9/VGAM/man/deplot.lmscreg.Rd | 5
VGAM-0.7-9/VGAM/man/dexpbinomial.Rd | 5
VGAM-0.7-9/VGAM/man/dirichlet.Rd | 11
VGAM-0.7-9/VGAM/man/dirmultinomial.Rd | 2
VGAM-0.7-9/VGAM/man/enzyme.Rd | 1
VGAM-0.7-9/VGAM/man/felixUC.Rd | 8
VGAM-0.7-9/VGAM/man/fgm.Rd | 2
VGAM-0.7-9/VGAM/man/fill.Rd | 195 -
VGAM-0.7-9/VGAM/man/fitted.vlm.Rd | 8
VGAM-0.7-9/VGAM/man/frank.Rd | 2
VGAM-0.7-9/VGAM/man/frankUC.Rd | 8
VGAM-0.7-9/VGAM/man/frechet.Rd | 8
VGAM-0.7-9/VGAM/man/frechetUC.Rd | 8
VGAM-0.7-9/VGAM/man/freund61.Rd | 2
VGAM-0.7-9/VGAM/man/fsqrt.Rd | 6
VGAM-0.7-9/VGAM/man/gammahyp.Rd | 2
VGAM-0.7-9/VGAM/man/gaussianff.Rd | 2
VGAM-0.7-9/VGAM/man/gev.Rd | 31
VGAM-0.7-9/VGAM/man/gevUC.Rd | 40
VGAM-0.7-9/VGAM/man/gew.Rd | 1
VGAM-0.7-9/VGAM/man/ggammaUC.Rd | 8
VGAM-0.7-9/VGAM/man/golf.Rd | 6
VGAM-0.7-9/VGAM/man/gpd.Rd | 22
VGAM-0.7-9/VGAM/man/gpdUC.Rd | 40
VGAM-0.7-9/VGAM/man/grc.Rd | 29
VGAM-0.7-9/VGAM/man/gumbel.Rd | 5
VGAM-0.7-9/VGAM/man/gumbelIbiv.Rd | 2
VGAM-0.7-9/VGAM/man/gumbelUC.Rd | 10
VGAM-0.7-9/VGAM/man/hspider.Rd | 1
VGAM-0.7-9/VGAM/man/hunua.Rd | 6
VGAM-0.7-9/VGAM/man/hyperg.Rd | 2
VGAM-0.7-9/VGAM/man/hzetaUC.Rd | 7
VGAM-0.7-9/VGAM/man/invbinomial.Rd | 2
VGAM-0.7-9/VGAM/man/kumarUC.Rd | 20
VGAM-0.7-9/VGAM/man/laplaceUC.Rd | 8
VGAM-0.7-9/VGAM/man/leipnik.Rd | 2
VGAM-0.7-9/VGAM/man/levy.Rd | 2
VGAM-0.7-9/VGAM/man/lgammaUC.Rd | 8
VGAM-0.7-9/VGAM/man/lino.Rd | 2
VGAM-0.7-9/VGAM/man/linoUC.Rd | 7
VGAM-0.7-9/VGAM/man/lirat.Rd | 1
VGAM-0.7-9/VGAM/man/lms.bcg.Rd | 14
VGAM-0.7-9/VGAM/man/lms.bcn.Rd | 11
VGAM-0.7-9/VGAM/man/lms.yjn.Rd | 11
VGAM-0.7-9/VGAM/man/logff.Rd | 4
VGAM-0.7-9/VGAM/man/logistic.Rd | 3
VGAM-0.7-9/VGAM/man/logit.Rd | 2
VGAM-0.7-9/VGAM/man/loglapUC.Rd |only
VGAM-0.7-9/VGAM/man/loglaplace.Rd |only
VGAM-0.7-9/VGAM/man/loglinb2.Rd | 1
VGAM-0.7-9/VGAM/man/loglinb3.Rd | 3
VGAM-0.7-9/VGAM/man/lqnorm.Rd | 2
VGAM-0.7-9/VGAM/man/lv.Rd | 1
VGAM-0.7-9/VGAM/man/lvplot.Rd | 1
VGAM-0.7-9/VGAM/man/lvplot.rrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/margeff.Rd |only
VGAM-0.7-9/VGAM/man/mbinomial.Rd | 2
VGAM-0.7-9/VGAM/man/mccullagh89.Rd | 2
VGAM-0.7-9/VGAM/man/mckaygamma2.Rd | 12
VGAM-0.7-9/VGAM/man/micmen.Rd | 1
VGAM-0.7-9/VGAM/man/model.framevlm.Rd | 20
VGAM-0.7-9/VGAM/man/model.matrixvlm.Rd | 18
VGAM-0.7-9/VGAM/man/morgenstern.Rd | 2
VGAM-0.7-9/VGAM/man/multinomial.Rd | 134 -
VGAM-0.7-9/VGAM/man/nakagami.Rd | 2
VGAM-0.7-9/VGAM/man/nakagamiUC.Rd | 7
VGAM-0.7-9/VGAM/man/nbolf.Rd | 6
VGAM-0.7-9/VGAM/man/negbinomial.Rd | 4
VGAM-0.7-9/VGAM/man/notdocumentedyet.Rd | 46
VGAM-0.7-9/VGAM/man/nzc.Rd | 3
VGAM-0.7-9/VGAM/man/olympic.Rd |only
VGAM-0.7-9/VGAM/man/ordpoisson.Rd | 6
VGAM-0.7-9/VGAM/man/oxtemp.Rd | 1
VGAM-0.7-9/VGAM/man/pareto1.Rd | 4
VGAM-0.7-9/VGAM/man/persp.qrrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/plackett.Rd | 2
VGAM-0.7-9/VGAM/man/plotdeplot.lmscreg.Rd | 5
VGAM-0.7-9/VGAM/man/plotqrrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/plotqtplot.lmscreg.Rd | 1
VGAM-0.7-9/VGAM/man/plotvgam.Rd | 65
VGAM-0.7-9/VGAM/man/plotvgam.control.Rd | 13
VGAM-0.7-9/VGAM/man/pneumo.Rd | 4
VGAM-0.7-9/VGAM/man/poissonp.Rd | 2
VGAM-0.7-9/VGAM/man/polf.Rd | 6
VGAM-0.7-9/VGAM/man/polonoUC.Rd | 2
VGAM-0.7-9/VGAM/man/posbinomUC.Rd | 3
VGAM-0.7-9/VGAM/man/posbinomial.Rd | 4
VGAM-0.7-9/VGAM/man/posnegbinUC.Rd | 1
VGAM-0.7-9/VGAM/man/posnegbinomial.Rd | 4
VGAM-0.7-9/VGAM/man/posnormUC.Rd | 2
VGAM-0.7-9/VGAM/man/pospoisUC.Rd | 3
VGAM-0.7-9/VGAM/man/predict.qrrvglm.Rd | 7
VGAM-0.7-9/VGAM/man/predict.vglm.Rd | 23
VGAM-0.7-9/VGAM/man/qrrvglm.control.Rd | 1
VGAM-0.7-9/VGAM/man/qtplot.gumbel.Rd | 5
VGAM-0.7-9/VGAM/man/qtplot.lmscreg.Rd | 1
VGAM-0.7-9/VGAM/man/quasibinomialff.Rd | 1
VGAM-0.7-9/VGAM/man/rayleigh.Rd | 4
VGAM-0.7-9/VGAM/man/rcqo.Rd | 2
VGAM-0.7-9/VGAM/man/recexp1.Rd | 15
VGAM-0.7-9/VGAM/man/recnormal1.Rd | 15
VGAM-0.7-9/VGAM/man/riceUC.Rd | 8
VGAM-0.7-9/VGAM/man/rrar.Rd | 14
VGAM-0.7-9/VGAM/man/rrvglm-class.Rd | 1
VGAM-0.7-9/VGAM/man/rrvglm.Rd | 2
VGAM-0.7-9/VGAM/man/rrvglm.control.Rd | 5
VGAM-0.7-9/VGAM/man/ruge.Rd | 1
VGAM-0.7-9/VGAM/man/s.Rd | 1
VGAM-0.7-9/VGAM/man/seq2binomial.Rd | 2
VGAM-0.7-9/VGAM/man/skellam.Rd | 3
VGAM-0.7-9/VGAM/man/skewnormal1.Rd | 2
VGAM-0.7-9/VGAM/man/snormUC.Rd | 8
VGAM-0.7-9/VGAM/man/sratio.Rd | 1
VGAM-0.7-9/VGAM/man/tikuvUC.Rd | 8
VGAM-0.7-9/VGAM/man/toxop.Rd | 1
VGAM-0.7-9/VGAM/man/triangle.Rd | 5
VGAM-0.7-9/VGAM/man/triangleUC.Rd | 8
VGAM-0.7-9/VGAM/man/trplot.Rd | 1
VGAM-0.7-9/VGAM/man/trplot.qrrvglm.Rd | 1
VGAM-0.7-9/VGAM/man/undocumented-methods.Rd | 39
VGAM-0.7-9/VGAM/man/uqo.Rd | 1
VGAM-0.7-9/VGAM/man/usagrain.Rd | 3
VGAM-0.7-9/VGAM/man/venice.Rd | 5
VGAM-0.7-9/VGAM/man/vgam-class.Rd | 1
VGAM-0.7-9/VGAM/man/vgam.Rd | 2
VGAM-0.7-9/VGAM/man/vgam.control.Rd | 28
VGAM-0.7-9/VGAM/man/vglm-class.Rd | 1
VGAM-0.7-9/VGAM/man/vglm.Rd | 164 -
VGAM-0.7-9/VGAM/man/vglm.control.Rd | 154 -
VGAM-0.7-9/VGAM/man/waitakere.Rd | 3
VGAM-0.7-9/VGAM/man/weightsvglm.Rd | 1
VGAM-0.7-9/VGAM/man/wffc.P2star.Rd | 11
VGAM-0.7-9/VGAM/man/wffc.Rd | 59
VGAM-0.7-9/VGAM/man/wffc.indiv.Rd | 14
VGAM-0.7-9/VGAM/man/wffc.nc.Rd | 20
VGAM-0.7-9/VGAM/man/wffc.teams.Rd | 14
VGAM-0.7-9/VGAM/man/yip88.Rd | 17
VGAM-0.7-9/VGAM/man/zanegbinUC.Rd | 16
VGAM-0.7-9/VGAM/man/zanegbinomial.Rd | 4
VGAM-0.7-9/VGAM/man/zapoisUC.Rd | 3
VGAM-0.7-9/VGAM/man/zapoisson.Rd | 8
VGAM-0.7-9/VGAM/man/zero.Rd | 1
VGAM-0.7-9/VGAM/man/zetaUC.Rd |only
VGAM-0.7-9/VGAM/man/zibinomial.Rd | 31
VGAM-0.7-9/VGAM/man/zinegbinomial.Rd | 2
VGAM-0.7-9/VGAM/man/zipebcom.Rd | 20
VGAM-0.7-9/VGAM/man/zipfUC.Rd | 8
VGAM-0.7-9/VGAM/src/vgam.f | 106
286 files changed, 8484 insertions(+), 6912 deletions(-)
Path: /cran/updated | permanent link
Author: S.C. Schmukle, F.D. Schoenbrodt and M.D. Back
Title: Social Relation Model (SRM) analyses for single round-robin
groups
Description: Social Relation Model (SRM) analysis for a single
Round-Robin group are performed. These analyses are either
based on one manifest variable, one latent construct measured
by two manifest variables, two manifest variables and their
bivariate relations, or two latent constructs each measured by
two manifest variables (in the last case, four Round-Robin
matrices have to be provided)
Diff between TripleR versions 0.1 dated 2009-06-02 and 0.1.1 dated 2009-06-16
DESCRIPTION | 8 +- R/RR.r | 16 +--- data/liking_a.tab | 110 ++++++++++++++-------------- data/liking_b.tab | 110 ++++++++++++++-------------- data/metaliking_a.tab | 110 ++++++++++++++-------------- data/metaliking_b.tab | 110 ++++++++++++++-------------- man/RR.Rd | 190 ++++++++++++++++++++++++------------------------- man/TripleR-package.Rd | 60 +++++++-------- 8 files changed, 356 insertions(+), 358 deletions(-)
More information about TripleR at CRAN
Path: /cran/updated | permanent link
More information about SigWinR at CRAN
Path: /cran/new | permanent link
Author: Matthias Graser
Title: EM-Algorithm for Jump Diffusion processes
Description: Calculates parameters for Jump Diffusion processes via
EM-Algorithm. The jumps-times are considered to be bernoulli
distributed with normally distributed jump-sizes.
Diff between EMJumpDiffusion versions 1.4 dated 2009-05-06 and 1.4.1 dated 2009-06-16
DESCRIPTION | 6 +++--- R/EMjump.R | 1 + man/EMJumpDiffusion-package.Rd | 2 +- 3 files changed, 5 insertions(+), 4 deletions(-)
More information about EMJumpDiffusion at CRAN
Path: /cran/updated | permanent link
More information about mar1s at CRAN
Path: /cran/new | permanent link
Author: Denis White
Diff between diamonds versions 1.0-4 dated 2007-10-27 and 1.0-5 dated 2009-06-16
More information about diamonds at CRAN
Title: Analysis and sampling grids from diamond partitions
Description: Functions for illustrating aperture-4 diamond partitions
in the plane, or on the surface of an octahedron or
icosahedron, for use as analysis or sampling grids.
diamonds-1.0-4/diamonds/INDEX |only
diamonds-1.0-5/diamonds/DESCRIPTION | 14 +++++++++-----
diamonds-1.0-5/diamonds/R/diamonds.R | 3 +++
3 files changed, 12 insertions(+), 5 deletions(-)
Path: /cran/updated | permanent link
More information about cmrutils at CRAN
Path: /cran/new | permanent link
More information about aroma.core at CRAN
Path: /cran/new | permanent link
Author: Christian Buchta and Michael Hahsler
Title: Mining frequent sequences
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Diff between arulesSequences versions 0.1-6 dated 2009-04-27 and 0.1-8 dated 2009-06-15
CHANGELOG | 5 +++++ DESCRIPTION | 8 ++++---- R/10timed.R | 1 + 3 files changed, 10 insertions(+), 4 deletions(-)
More information about arulesSequences at CRAN
Path: /cran/updated | permanent link
Author: Jeffrey A. Ryan, Josh M. Ulrich
Title: Extensible Time Series
Description: Provide for uniform handling of R's different time-based
data classes by extending zoo, maximizing native format
information preservation and allowing for user level
customization and extension, while simplifying cross-class
interoperability.
Diff between xts versions 0.6-5 dated 2009-05-13 and 0.6-6 dated 2009-06-14
DESCRIPTION | 8 NAMESPACE | 6 R/Ops.xts.R | 13 R/split.R |only R/xts.R | 6 R/zoo.R | 18 - R/zzz.R | 8 inst/doc/xts.pdf | 818 ++++++++++++++++++++++++++----------------------------- man/split.Rd |only 9 files changed, 432 insertions(+), 445 deletions(-)
More information about xts at CRAN
Path: /cran/updated | permanent link
Author: Fortran code by R. J. Renka. R functions by Albrecht Gebhardt
Diff between tripack versions 1.2-11 dated 2007-10-09 and 1.3-2 dated 2009-06-14
More information about tripack at CRAN
Title: Triangulation of irregularly spaced data
Description: A constrained two-dimensional Delaunay triangulation
package
tripack-1.2-11/tripack/COPYING |only
tripack-1.2-11/tripack/src-c |only
tripack-1.3-2/tripack/ChangeLog | 62 +++++-----
tripack-1.3-2/tripack/DESCRIPTION | 22 ++-
tripack-1.3-2/tripack/INDEX | 5
tripack-1.3-2/tripack/LICENSE |only
tripack-1.3-2/tripack/R/circles.R |only
tripack-1.3-2/tripack/R/on.convex.hull.R | 1
tripack-1.3-2/tripack/R/plot.tri.R | 12 +-
tripack-1.3-2/tripack/R/plot.voronoi.R | 2
tripack-1.3-2/tripack/R/voronoi.mosaic.R | 18 +--
tripack-1.3-2/tripack/man/add.constraint.Rd | 2
tripack-1.3-2/tripack/man/circles.Rd |only
tripack-1.3-2/tripack/man/convex.hull.Rd | 2
tripack-1.3-2/tripack/man/in.convex.hull.Rd | 2
tripack-1.3-2/tripack/man/neighbours.Rd | 2
tripack-1.3-2/tripack/man/on.convex.hull.Rd | 2
tripack-1.3-2/tripack/man/plot.tri.Rd | 5
tripack-1.3-2/tripack/man/plot.voronoi.Rd | 2
tripack-1.3-2/tripack/man/print.summary.tri.Rd | 2
tripack-1.3-2/tripack/man/print.summary.voronoi.Rd | 2
tripack-1.3-2/tripack/man/print.tri.Rd | 2
tripack-1.3-2/tripack/man/print.voronoi.Rd | 2
tripack-1.3-2/tripack/man/summary.tri.Rd | 2
tripack-1.3-2/tripack/man/summary.voronoi.Rd | 2
tripack-1.3-2/tripack/man/tri.Rd | 2
tripack-1.3-2/tripack/man/tri.find.Rd | 4
tripack-1.3-2/tripack/man/tri.mesh.Rd | 2
tripack-1.3-2/tripack/man/triangles.Rd | 2
tripack-1.3-2/tripack/man/voronoi.Rd | 3
tripack-1.3-2/tripack/man/voronoi.findrejectsites.Rd | 2
tripack-1.3-2/tripack/src/awvor.f |only
tripack-1.3-2/tripack/src/dsos.f |only
tripack-1.3-2/tripack/src/func.f |only
tripack-1.3-2/tripack/src/inhull.f | 111 +++++++------------
tripack-1.3-2/tripack/src/init.c |only
tripack-1.3-2/tripack/src/tripack.h |only
tripack-1.3-2/tripack/src/voronoi.f | 7 -
38 files changed, 144 insertions(+), 140 deletions(-)
Path: /cran/updated | permanent link
Author: Thomas Scheike with contributions from Torben Martinussen and
Jeremy Silver
Title: timereg package for Flexible regression models for survival
data.
Description: Programs for Martinussen and Scheike (2006), `Dynamic
Regression Models for Survival Data', Springer Verlag. Plus
more recent developments. Additive survival model,
semiparmetric proportional odds model, cumulative residuals,
excess risk models and more. Flexible competing risks
regression including GOF-tests.
Diff between timereg versions 1.2-0 dated 2009-06-08 and 1.2-2 dated 2009-06-14
DESCRIPTION | 6 +++--- R/predict-timereg.r | 4 ++-- 2 files changed, 5 insertions(+), 5 deletions(-)
More information about timereg at CRAN
Path: /cran/updated | permanent link
Author: Susanne Heim, with support from Paul Eilers, Thomas Kneib, and
Michael Kobl
Title: 2d and 3d Space-Varying Coefficient Models
Description: 2d and 3d space-varying coefficient models are fitted to
regular grid data using either a full B-spline tensor product
approach or a sequential approximation. The latter one is
computationally more efficient. Resolution increment is
enabled.
Diff between svcm versions 0.1.1 dated 2007-04-19 and 0.1.2 dated 2009-06-14
DESCRIPTION | 18 ++++++++++++------ inst/CITATION | 19 +++++++++++-------- man/svcm-package.Rd | 2 +- 3 files changed, 24 insertions(+), 15 deletions(-)
More information about svcm at CRAN
Path: /cran/updated | permanent link
More information about sddpack at CRAN
Path: /cran/new | permanent link
More information about robustX at CRAN
Path: /cran/new | permanent link
Author: Jeffrey A. Ryan
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial
trading strategies
Diff between quantmod versions 0.3-9 dated 2009-06-08 and 0.3-10 dated 2009-06-14
DESCRIPTION | 8 ++++---- R/adjustOHLC.R | 2 +- R/getSymbols.R | 7 +++++-- man/getSymbols.yahoo.Rd | 8 +++++++- 4 files changed, 17 insertions(+), 8 deletions(-)
More information about quantmod at CRAN
Path: /cran/updated | permanent link
Author: Reinhold Hatzinger
Title: Utilities to fit paired comparison models for preferences
Description: Generates design matrix for analysing real paired
comparisons and derived paired comparison data (Likert type
items / ratings or rankings) using a loglinear approach. Fits
loglinear Bradley-Terry model (LLBT) exploting an eliminate
feature. Computes pattern models for paired comparisons,
rankings, and ratings. Some treatment of missing values (MCAR
and MNAR).
Diff between prefmod versions 0.8-15 dated 2009-06-02 and 0.8-16 dated 2009-06-14
DESCRIPTION | 8 ++++---- NAMESPACE | 2 +- R/patt.worth.R | 11 ++++++----- man/plotworth.Rd | 2 +- man/prefmod-package.Rd | 4 ++-- 5 files changed, 14 insertions(+), 13 deletions(-)
More information about prefmod at CRAN
Path: /cran/updated | permanent link
Author: Jim Lemon,Ben Bolker,Sander Oom, Eduardo Klein,Barry
Rowlingson, Hadley Wickham,Anupam Tyagi, Olivier
Eterradossi,Gabor Grothendieck, Michael Toews,John Kane,Mike
Cheetham, Rolf Turner,Carl Witthoft,Julian Stander, Thomas
Petzoldt,Remko Duursma,Elisa Biancotto, Ofir Levy
Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling
functions.
Diff between plotrix versions 2.6 dated 2009-05-24 and 2.6-1 dated 2009-06-14
DESCRIPTION | 8 ++++---- NEWS | 9 +++++++++ R/gantt.R | 8 ++------ R/gap.barplot.R | 2 +- R/gap.plot.R | 32 +++++++++++++++++--------------- R/radial.plot.R | 42 +++++++++++++++++++++++++++++++++--------- R/twoord.plot.R | 4 +++- man/hierobarp.Rd | 2 +- man/radial.plot.Rd | 11 ++++++++--- man/twoord.plot.Rd | 3 ++- 10 files changed, 80 insertions(+), 41 deletions(-)
More information about plotrix at CRAN
Path: /cran/updated | permanent link
Author: Jonathan P. Weeks
Diff between plink versions 1.1-2 dated 2009-06-02 and 1.1-3 dated 2009-06-14
More information about plink at CRAN
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a
nonequivalent groups common item design. The unidimensional
methods include the Mean/Mean, Mean/Sigma, Haebara, and
Stocking-Lord methods for dichotomous (1PL, 2PL and 3PL) and/or
polytomous (graded response, partial credit/generalized partial
credit, nominal, and multiple-choice model) items. The
multidimensional methods include the Reckase-Martineau method
and extensions of the Haebara and Stocking-Lord method using a
single dilation parameter, multiple dilation parameters, or the
Oshima, Davey, & Lee approach for multidimensional extensions
of all the unidimensional dichotomous and polytomous item
response models. The package also includes functions for
importing item and/or ability parameters from common IRT
software and ploting item characteristic/category curves or
surfaces and vector plots.
DESCRIPTION | 8 ++++----
R/plink.R | 46 ++++++++++++++++++++++++++++------------------
R/plot.R | 1 -
inst/CITATION | 4 ++--
inst/NEWS | 17 +++++++++++++++++
man/plink-methods.Rd | 26 +++++++++++++++++++-------
6 files changed, 70 insertions(+), 32 deletions(-)
Path: /cran/updated | permanent link
More information about pamm at CRAN
Path: /cran/new | permanent link
Author: Katherine S. Pollard, Houston N. Gilbert, Yongchao Ge, Sandra
Taylor, Sandrine Dudoit
Title: Resampling-based multiple hypothesis testing
Description: Non-parametric bootstrap and permutation resampling-based
multiple testing procedures (including empirical Bayes methods)
for controlling the family-wise error rate (FWER), generalized
family-wise error rate (gFWER), tail probability of the
proportion of false positives (TPPFP), and false discovery rate
(FDR). Several choices of bootstrap-based null distribution
are implemented (centered, centered and scaled,
quantile-transformed). Single-step and step-wise methods are
available. Tests based on a variety of t- and F-statistics
(including t-statistics based on regression parameters from
linear and survival models as well as those based on
correlation parameters) are included. When probing hypotheses
with t-statistics, users may also select a potentially faster
null distribution which is multivariate normal with mean zero
and variance covariance matrix derived from the vector
influence function. Results are reported in terms of adjusted
p-values, confidence regions and test statistic cutoffs. The
procedures are directly applicable to identifying
differentially expressed genes in DNA microarray experiments.
Diff between multtest versions 2.0.0 dated 2009-05-10 and 2.1.1 dated 2009-06-14
DESCRIPTION | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-)
More information about multtest at CRAN
Path: /cran/updated | permanent link
Author: Christopher Jackson
Diff between msm versions 0.9 dated 2009-06-10 and 0.9.1 dated 2009-06-14
More information about msm at CRAN
Title: Multi-state Markov and hidden Markov models in continuous time
Description: Functions for fitting general continuous-time Markov and
hidden Markov multi-state models to longitudinal data. Both
Markov transition rates and the hidden Markov output process
can be modelled in terms of covariates. A variety of
observation schemes are supported, including processes observed
at arbitrary times, completely-observed processes, and censored
states.
ChangeLog | 9 ++++++++-
DESCRIPTION | 8 ++++----
inst/NEWS | 7 +++++++
inst/doc/msm-manual.pdf |binary
tests/simple.R | 8 ++++----
5 files changed, 23 insertions(+), 9 deletions(-)
Path: /cran/updated | permanent link
Author: Kengo NAGASHIMA and Yasunori SATO
Title: Modified Maximum Contrast Method
Description: This package provides an implementation of modified
maximum contrast method. Current version supports function
mmcm.resamp that gives P-value for the modified maximum
contrast statistics by using a resampling based procedure.
Diff between mmcm versions 1.0-0 dated 2009-01-26 and 1.0-1 dated 2009-06-14
DESCRIPTION | 26 ++++++++++++++------------ NEWS | 1 + man/mmcm.Rd | 2 +- man/m