Author: Christian Buchta, Kurt Hornik, Ingo Feinerer, David Meyer
Title: Text Analysis Utilities
Description: Utilities for text analysis
Diff between tau versions 0.0-1 dated 2009-08-26 and 0.0-2 dated 2009-08-31
DESCRIPTION | 8 ++++---- man/util.Rd | 10 ++++++---- src/textcnt.c | 47 +++++++++++++++-------------------------------- 3 files changed, 25 insertions(+), 40 deletions(-)
Author: Christian B. Pipper
Diff between multmod versions 0.4 dated 2009-06-29 and 0.5 dated 2009-08-31
Title: Testing of multiple outcomes
Description: Testing of multiple outcomes using i.i.d. decompositions
DESCRIPTION | 8 ++++----
NEWS | 3 ++-
R/alphacorrected.R | 38 +++++++++++++++++++++++---------------
R/amtest.R | 30 ++++++++++++++++++++++++------
man/amtest.Rd | 9 ++++++---
5 files changed, 59 insertions(+), 29 deletions(-)
Author: Jared O'Connell
Diff between mhsmm versions 0.2.3 dated 2009-04-14 and 0.3.0 dated 2009-08-31
Title: Parameter estimation and prediction for hidden Markov and
semi-Markov models for data with multiple observation
sequences.
Description: Parameter estimation and prediction for hidden Markov and
semi-Markov models for data with multiple observation
sequences. Suitable for equidistant time series data, with
multivariate and/or missing data.
ChangeLog | 8 ++++-
DESCRIPTION | 26 +++++++-----------
R/hmm_functions.R | 67 ++++++++++++++++++++++++++++++-----------------
R/hsmm_functions.R | 60 +++++++++++-------------------------------
R/plotting_functions.R |only
R/spec_functions.r |only
inst |only
man/addStates.Rd |only
man/dmvnorm.hsmm.Rd |only
man/dnorm.hsmm.Rd | 4 +-
man/dpois.hsmm.Rd |only
man/hmmfit.Rd | 17 +++++------
man/hmmspec.Rd | 6 ++--
man/hsmmfit.Rd | 21 +++++++-------
man/hsmmspec.Rd | 6 ++--
man/mstep.mvnorm.Rd |only
man/mstep.pois.Rd |only
man/plot.hsmm.data.Rd | 12 ++++++++
man/rmvnorm.hsmm.Rd |only
man/rpois.hsmm.Rd |only
man/simulate.hmmspec.Rd | 7 ++--
man/simulate.hsmmspec.Rd | 3 +-
22 files changed, 124 insertions(+), 113 deletions(-)
Author: Guido Schwarzer
Diff between meta versions 0.9-19 dated 2009-04-15 and 1.0-6 dated 2009-08-31
Title: Meta-Analysis
Description: Fixed and random effects meta-analysis. Functions for
tests of bias, forest and funnel plot.
DESCRIPTION | 10 -
INDEX | 3
NAMESPACE | 10 -
R/forest.R | 69 +++++++++----
R/metabias.R | 11 +-
R/metabin.R | 21 +++-
R/metacont.R | 18 ++-
R/metacr.R |only
R/metacum.R | 29 +++++
R/metagen.R | 16 ++-
R/metainf.R | 36 ++++++-
R/metaprop.R | 14 ++
R/plot.meta.R | 36 +++++--
R/print.meta.R | 85 ++++++++++++----
R/print.metabias.R |only
R/print.summary.meta.R | 221 +++++++++++++++++++++++++++++--------------
R/read.rm5.R |only
R/summary.meta.R | 102 +++++++++++++------
R/trimfill.R | 36 ++++---
data/Fleiss93_CR.csv |only
data/Fleiss93_CR_Windows.csv |only
man/Fleiss93.Rd | 3
man/Fleiss93cont.Rd | 5
man/forest.Rd | 56 ++++++++--
man/metabin.Rd | 56 ++++++++--
man/metacont.Rd | 51 ++++++++-
man/metacr.Rd |only
man/metacum.Rd | 15 ++
man/metagen.Rd | 47 +++++++--
man/metainf.Rd | 13 +-
man/metaprop.Rd | 51 ++++++++-
man/plot.meta.Rd | 28 ++++-
man/print.meta.Rd | 55 +++++++++-
man/read.rm5.Rd |only
man/trimfill.Rd | 40 ++++++-
35 files changed, 878 insertions(+), 259 deletions(-)
Author: Stefano Iacus
Diff between cem versions 1.0.108 dated 2009-06-02 and 1.0.111 dated 2009-08-31
Title: CEM: Software for Coarsened Exact Matching
Description: This program implements the coarsened exact matching
algorithm (and many extensions) described in Stefano M. Iacus,
Gary King, and Giuseppe Porro, "Matching for Causal Inference
Without Balance Checking,"
http://gking.harvard.edu/files/abs/cem-abs.shtml
DESCRIPTION | 8
R/relax.cem.R | 2
inst/doc/Rplots.pdf | 6
inst/doc/cem.Rnw | 2
inst/doc/cem.pdf | 4322 +++++++++++++++++++++++++-------------------------
inst/doc/coarsen1.pdf | 6
inst/doc/coarsen2.pdf | 6
inst/doc/copyRd.Rout | 2
inst/doc/index.shtml | 10
inst/doc/teff.pdf | 6
10 files changed, 2257 insertions(+), 2113 deletions(-)
Author: Bear F. Braumoeller
Diff between boolean versions 1.1-2.1 dated 2009-02-23 and 2.0-0 dated 2009-08-31
Title: Boolean Binary Response Models
Description: This package implements a partial-observability procedure
for testing Boolean hypotheses that generalizes the binary
response GLM.
DESCRIPTION | 27
NAMESPACE | 11
R/Zelig.R |only
R/boolean.R | 1485 +++++++++++++++++++++++-------------------
R/hidden.R | 662 +++++++-----------
R/zzz.R |only
man/boolean.Rd | 4
man/boolplot.Rd |only
man/coef.booltest.Rd | 32
man/effectplot.Rd |only
man/fitted.booltest.Rd | 41 -
man/latent.Rd |only
man/print.summary.booltest.Rd | 35
man/setx.booltest.Rd |only
man/sim.booltest.Rd |only
man/summary.booltest.Rd | 39 -
man/weights.booltest.Rd | 30
man/zelig.boolprep.Rd |only
18 files changed, 1275 insertions(+), 1091 deletions(-)
Author: Federico Girosi
Diff between YourCast versions 1.1-1 dated 2009-08-27 and 1.1-2 dated 2009-08-31
Title: YourCast
Description: YourCast makes time series cross-sectional forecasts with
multiple cross-sections based on your assumptions. It allows a
variety of smoothing assumptions based on similarities among
the levels, trends, or interactions in the expected value of
the dependent variable rather than the coefficients. YourCast
implements ideas in the book Federico Girosi and Gary King.
DEMOGRAPHIC FORECASTING. Princeton University Press, 2008; see
http://gking.harvard.edu/files/smooth/
DESCRIPTION | 10 +++++-----
R/yourprep.R | 4 +++-
inst/doc/copyRd.Rout | 2 +-
inst/doc/index.shtml | 2 +-
4 files changed, 10 insertions(+), 8 deletions(-)
Author: Compiled by Adrian Trapletti
Diff between tseries versions 0.10-18 dated 2009-02-05 and 0.10-19 dated 2009-08-31
Title: Time series analysis and computational finance
Description: Package for time series analysis and computational finance
ChangeLog | 6 ++++++
DESCRIPTION | 8 +++++---
man/garch-methods.Rd | 2 +-
man/get.hist.quote.Rd | 10 +++++-----
man/portfolio.optim.Rd | 2 +-
5 files changed, 18 insertions(+), 10 deletions(-)
Author: Kurt Hornik and David Meyer
Title: Data Structures and Algorithms for Relations
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate
functions, and fitters for consensus relations.
Diff between relations versions 0.5-3 dated 2009-08-10 and 0.5-4 dated 2009-08-31
DESCRIPTION | 8 ++++---- NEWS | 4 ++++ inst/NEWS | 4 ++++ inst/doc/relations.pdf |binary man/pclust.Rd | 2 +- man/plot.Rd | 2 +- man/reduction.Rd | 6 ++++-- man/relation.Rd | 6 +++--- 8 files changed, 21 insertions(+), 11 deletions(-)
Author: Kurt Hornik, with contributions from Walter Boehm
Title: Cluster ensembles
Description: CLUster Ensembles
Diff between clue versions 0.3-29 dated 2009-08-13 and 0.3-30 dated 2009-08-31
DESCRIPTION | 8 ++++---- man/cl_validity.Rd | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Author: Kurt Hornik
Title: Snowball Stemmers
Description: Snowball stemmers.
Diff between Snowball versions 0.0-6 dated 2009-06-09 and 0.0-7 dated 2009-08-31
DESCRIPTION | 10 +++++----- R/zzz.R | 13 +------------ man/SnowballStemmer.Rd | 2 +- 3 files changed, 7 insertions(+), 18 deletions(-)
Author: Kurt Hornik, with contributions from Christian Buchta, Torsten
Hothorn, Alexandros Karatzoglou, David Meyer, and Achim Zeileis
Title: R/Weka interface
Description: An R interface to Weka (Version 3.6.1). Weka is a
collection of machine learning algorithms for data mining tasks
written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Both the R interface and Weka itself are
contained in the RWeka package. For more information on Weka
see http://www.cs.waikato.ac.nz/~ml/weka/.
Diff between RWeka versions 0.3-20 dated 2009-07-01 and 0.3-21 dated 2009-08-31
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- man/Weka_classifier_functions.Rd | 2 +- man/Weka_classifier_lazy.Rd | 2 +- man/Weka_classifier_meta.Rd | 4 ++-- man/Weka_classifier_rules.Rd | 2 +- man/Weka_classifier_trees.Rd | 2 +- man/Weka_classifiers.Rd | 2 +- man/Weka_clusterers.Rd | 4 ++-- man/Weka_converters.Rd | 2 +- man/Weka_interfaces.Rd | 6 +++--- man/dot.Rd | 2 +- 12 files changed, 22 insertions(+), 18 deletions(-)
Author: Kurt Hornik
Title: Harvest Metadata Using OAI-PMH v2.0
Description: Harvest metadata using the Open Archives Initiative
Protocol for Metadata Harvesting (OAI-PMH) version 2.0.
Diff between OAIHarvester versions 0.0-4 dated 2009-07-30 and 0.0-5 dated 2009-08-31
DESCRIPTION | 8 ++++---- man/harvest.Rd | 6 +++--- 2 files changed, 7 insertions(+), 7 deletions(-)
Author: Christian Buchta and Kurt Hornik
Title: Selected ISO codes
Description: ISO language, territory, currency, script and character
codes. Provides ISO 639 language codes, ISO 3166 territory
codes, ISO 4217 currency codes, ISO 15924 script codes, and the
ISO 8859 and ISO 10646 character codes as well as the Unicode
data table and UN M.49 area codes.
Diff between ISOcodes versions 0.2-4 dated 2009-04-03 and 0.2-5 dated 2009-08-31
DESCRIPTION | 8 ++++---- data/UN_M.49_Countries.rda |binary data/UN_M.49_Regions.rda |binary man/UN_M.49.Rd | 2 +- man/Unicode.Rd | 2 +- 5 files changed, 6 insertions(+), 6 deletions(-)
Author: Dan Rabosky
Title: Likelihood Analysis of Speciation/Extinction Rates from
Phylogenies
Description: laser implements maximum likelihood methods based on the
birth-death process to test whether diversification rates have
changed over time and whether rates vary among lineages.
Diff between laser versions 2.2 dated 2008-09-22 and 2.3 dated 2009-08-30
DESCRIPTION | 20 +++++++++++------- R/mccrTest.R | 46 ++++++++++++++++++++++--------------------- man/laser-package.Rd | 2 - man/plotNodeNumbers.phylo.Rd | 2 - man/plotRate.Rd | 2 - 5 files changed, 36 insertions(+), 36 deletions(-)
Author: Ralf Strobl
Diff between km.ci versions 0.5-1 dated 2007-10-21 and 0.5-2 dated 2009-08-30
Title: Confidence intervals for the Kaplan-Meier estimator
Description: Computes various confidence intervals for the Kaplan-Meier
estimator, namely: Petos CI, Rothman CI, CI's based on
Greenwoods variance, Thomas and Grunkemeier CI and the
simultaneous confidence bands by Nair and Hall and Wellner.
DESCRIPTION | 15 ++++++++++-----
man/km.ci.Rd | 10 ++++++----
2 files changed, 16 insertions(+), 9 deletions(-)
Author: Jan de Leeuw, Kurt Hornik, Patrick Mair
Title: Active set and generalized PAVA for isotone optimization
Description: This package contains two main functions: gpava() for
solving general isotone regression problem using the
pool-adjacent-violators algorithm (PAVA). activeSet() provides
a framework of active set methods for isotone optimization
problems. Various loss functions are pre-spcified.
Diff between isotone versions 0.8-1 dated 2009-03-26 and 0.8-6 dated 2009-08-30
isotone-0.8-1/isotone/inst/doc/isotone-004.eps |only isotone-0.8-1/isotone/inst/doc/isotone-004.pdf |only isotone-0.8-1/isotone/inst/doc/isotone-008.eps |only isotone-0.8-1/isotone/inst/doc/isotone-008.pdf |only isotone-0.8-1/isotone/inst/doc/pava-004.eps |only isotone-0.8-1/isotone/inst/doc/pava-004.pdf |only isotone-0.8-1/isotone/inst/doc/pava-008.eps |only isotone-0.8-1/isotone/inst/doc/pava-008.pdf |only isotone-0.8-6/isotone/DESCRIPTION | 13 isotone-0.8-6/isotone/R/aSolver.R | 1 isotone-0.8-6/isotone/R/activeSet.R | 50 ++ isotone-0.8-6/isotone/R/dSolver.R | 3 isotone-0.8-6/isotone/R/eSolver.R | 1 isotone-0.8-6/isotone/R/fSolver.R | 1 isotone-0.8-6/isotone/R/gpava.R | 10 isotone-0.8-6/isotone/R/hSolver.R | 1 isotone-0.8-6/isotone/R/iSolver.R | 2 isotone-0.8-6/isotone/R/lfSolver.R | 3 isotone-0.8-6/isotone/R/lsSolver.R | 7 isotone-0.8-6/isotone/R/mSolver.R | 3 isotone-0.8-6/isotone/R/oSolver.R | 1 isotone-0.8-6/isotone/R/pSolver.R | 3 isotone-0.8-6/isotone/R/print.activeset.R | 8 isotone-0.8-6/isotone/R/sSolver.R | 4 isotone-0.8-6/isotone/R/weighted.fractile.R | 4 isotone-0.8-6/isotone/inst/doc/isotone.Rnw | 512 ++++++++++--------------- isotone-0.8-6/isotone/inst/doc/isotone.pdf |binary isotone-0.8-6/isotone/man/aSolver.Rd | 3 isotone-0.8-6/isotone/man/activeSet.Rd | 65 +-- isotone-0.8-6/isotone/man/dSolver.Rd | 3 isotone-0.8-6/isotone/man/eSolver.Rd | 3 isotone-0.8-6/isotone/man/fSolver.Rd | 3 isotone-0.8-6/isotone/man/gpava.Rd | 16 isotone-0.8-6/isotone/man/hSolver.Rd | 5 isotone-0.8-6/isotone/man/iSolver.Rd | 3 isotone-0.8-6/isotone/man/lfSolver.Rd | 3 isotone-0.8-6/isotone/man/lsSolver.Rd | 3 isotone-0.8-6/isotone/man/mSolver.Rd | 3 isotone-0.8-6/isotone/man/oSolver.Rd | 13 isotone-0.8-6/isotone/man/pSolver.Rd | 3 isotone-0.8-6/isotone/man/sSolver.Rd | 10 isotone-0.8-6/isotone/man/weighted.fractile.Rd |only isotone-0.8-6/isotone/man/weighted.median.Rd |only 43 files changed, 352 insertions(+), 411 deletions(-)
Author: Rob J Hyndman
Diff between forecasting versions 1.25 dated 2009-07-22 and 1.26 dated 2009-08-30
Bundle: forecasting
Contains: forecast fma Mcomp expsmooth
DESCRIPTION | 10 ++--
forecast/ChangeLog |only
forecast/NAMESPACE | 6 --
forecast/R/forecast.R | 92 ++++++++++++++++++++++++++++++++------
forecast/R/forecast2.R | 8 ---
forecast/man/arima.errors.Rd | 2
forecast/man/auto.arima.Rd | 6 --
forecast/man/fitted.Arima.Rd | 2
forecast/man/forecast.Arima.Rd | 6 --
forecast/man/forecast.StructTS.Rd | 7 +-
forecast/man/forecastplot.Rd | 2
forecast/man/na.interp.Rd | 5 --
forecast/man/numberdiffs.Rd | 3 -
forecast/man/seasonal.dummy.Rd | 5 --
forecast/man/seasonplot.Rd | 4 -
forecast/man/spline.f.Rd | 2
forecast/man/ts.display.Rd | 2
17 files changed, 102 insertions(+), 60 deletions(-)
Author: Patrick Mair, Eric Wu
Title: R/EQS Interface
Description: This package contains the function run.eqs() which calls
an EQS script file, executes the EQS estimation, and, finally,
imports the results as R objects. These two steps can be
performed separately: call.eqs() calls and executes EQS,
whereas read.eqs() imports existing EQS outputs as objects into
R.
Diff between REQS versions 0.8-1 dated 2009-08-01 and 0.8-4 dated 2009-08-30
DESCRIPTION | 8 ++++---- R/call.eqs.R | 11 ++++++----- R/read.eqs.R | 4 ++-- 3 files changed, 12 insertions(+), 11 deletions(-)
Author: John Fox
Diff between Rcmdr versions 1.4-10 dated 2009-04-27 and 1.5-1 dated 2009-08-30
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical
user interface) for R, based on the tcltk package.
DESCRIPTION | 24
NAMESPACE | 15
R/commander.R | 25
R/data-menu.R | 3377 ++++++++++++++++++-----------------
R/file-menu.R | 33
R/graphs-menu.R | 13
R/ismdi.R |only
R/model-menu.R | 123 +
R/sciviews-specific.R | 5
R/startup.R | 6
R/statistics-dimensional-menu.R | 3
R/statistics-means-menu.R | 18
R/statistics-models-menu.R | 6
R/statistics-proportions-menu.R | 6
R/statistics-summaries-menu.R | 184 +
R/statistics-tables-menu.R | 8
R/utilities.R | 753 +++++--
inst/CHANGES | 38
inst/etc/Rcmdr-menus.txt | 8
inst/etc/linux/Rcmdr.desktop | 2
inst/po/pt_BR/LC_MESSAGES/R-Rcmdr.mo |binary
man/Commander-es.Rd | 3
man/Commander.Rd | 48
man/Rcmdr-package.Rd | 6
man/Rcmdr.Utilities.Rd | 30
man/Scatter3DDialog.Rd | 2
man/generalizedLinearModel.Rd | 3
man/hierarchicalCluster.Rd | 2
man/linearModel.Rd | 3
man/mergeRows.Rd |only
man/rcorr.adjust.Rd |only
man/reliability.Rd | 2
man/scatter3d.Rd | 2
man/stepwise.Rd |only
po/R-Rcmdr.pot | 151 +
src |only
36 files changed, 2849 insertions(+), 2050 deletions(-)
Author: Alex Couture-Beil
Diff between rjson versions 0.1.6 dated 2009-08-24 and 0.1.7 dated 2009-08-28
Title: JSON for R
Description: Converts R object into JSON objects and vice-versa
DESCRIPTION | 8 ++++----
R/json.R | 5 +++++
inst/changelog.txt | 5 ++++-
inst/doc/json_rpc_server.pdf |binary
4 files changed, 13 insertions(+), 5 deletions(-)
Author: Florent Baty
Diff between nlstools versions 0.0-8 dated 2009-02-20 and 0.0-9 dated 2009-08-28
Title: Tools for nonlinear regression diagnostics
Description: Several tools for assessing the quality of fit of a
gaussian nonlinear model are provided.
ChangeLog | 5 +++++
DESCRIPTION | 26 +++++++++++++++-----------
LICENCE |only
R/First.lib.R | 2 +-
R/nlsBoot.R | 2 +-
R/nlsContourRSS.R | 8 +++-----
R/nlstools.R | 16 ++++++++++------
inst/CITATION |only
inst/NEWS |only
inst/doc/nlstools_vignette.Rnw | 18 +++++++++---------
inst/doc/nlstools_vignette.pdf |binary
inst/gpl-3.0.txt |only
man/nlsConfRegions.Rd | 4 ++++
man/nlsContourRSS.Rd | 3 ++-
man/nlstools.Rd | 12 +++++++++++-
15 files changed, 61 insertions(+), 35 deletions(-)
Author: Luc Wouters
Diff between mpm versions 1.0-15 dated 2009-05-27 and 1.0-16 dated 2009-08-28
Title: Multivariate Projection Methods
Description: Exploratory graphical analysis of multivariate data,
specifically gene expression data with different projection
methods: principal component analysis, correspondence analysis,
spectral map analysis.
DESCRIPTION | 10 +++++-----
R/mpm.R | 3 ++-
R/plot.mpm.R | 16 ++++++++++------
inst/NEWS | 4 ++++
man/mpm.Rd | 50 +++++++++++++++++++++++++-------------------------
man/plot.mpm.Rd | 18 +++++++++---------
man/summary.mpm.Rd | 6 +++---
7 files changed, 58 insertions(+), 49 deletions(-)
Author: Lane F. Burgette
Diff between endogMNP versions 0.1-1 dated 2009-06-24 and 0.1-2 dated 2009-08-28
Title: R Package for Fitting Multinomial Probit Models with Endogenous
Selection
Description: endogMNP is an R package that fits a Bayesian multinomial
probit model with endogenous selection, which is sometimes
called an endogenous switching model. This can be used to
model discrete choice data when respondents select themselves
into one of several groups. This package is based on the MNP
package by Kosuke Imai and David A. van Dyk. This package
modifies their code.
DESCRIPTION | 28 +++++++++----------
R/XandYmatrix.endogMNP.R | 42 ++++++++++++++++++++++++-----
R/endogMNP.R | 68 +++++++++++++++++++++++++++++++++++++++++------
man/endogMNP.Rd | 22 ++++++++-------
man/summary.endogMNP.Rd | 4 +-
src/endogMNP.c | 3 --
src/endogMNPsel.c |only
7 files changed, 126 insertions(+), 41 deletions(-)
Author: Peter Gilbert, Ian McKeague, and Yanqing Sun
Title: Continuous mark-specific relative risks for two groups
Description: Estimation and testing of continuous mark-specific
relative risks in two groups as described in Gilbert, P.,
McKeague, I. and Sun, Y. (2008) The 2-sample problem for
failure rates depending on a continuous mark: an application to
vaccine efficacy. Biostatistics 9, 2, 263-276. This package
implements the methods presented in the paper for testing
mark-specific hazards ratios and for estimation of
mark-specific incidence ratios that are cumulative in time or
cumulative in both time and the continuous mark.
Diff between cmprskContin versions 1.2 dated 2009-08-21 and 1.3 dated 2009-08-28
DESCRIPTION | 8 ++++---- NEWS | 9 ++++++++- configure.in | 2 +- man/cmprskContin-package.Rd | 4 ++-- 4 files changed, 15 insertions(+), 8 deletions(-)
Author: Joshua Ulrich
Title: Technical Trading Rules
Description: Functions and data to construct technical trading rules
with R.
Diff between TTR versions 0.20-0 dated 2009-07-30 and 0.20-1 dated 2009-08-28
CHANGES | 37 ++++++++++++------------------------- DESCRIPTION | 10 +++++----- R/ATR.R | 2 +- R/CMO.R | 5 ++++- R/DPO.R | 10 +++++----- R/DonchianChannel.R | 1 + R/EMV.R | 2 +- R/GMMA.R | 5 +++-- R/KST.R | 5 ++++- R/MACD.R | 5 ++++- R/MovingAverages.R | 15 ++++++++++----- R/RSI.R | 4 +++- R/TDI.R | 7 ++++++- R/TRIX.R | 5 ++++- R/VHF.R | 3 +-- R/aroon.R | 5 +++-- R/bollingerBands.R | 1 + R/stochastics.R | 5 ++++- man/MovingAverages.Rd | 2 +- man/TTR.Rd | 4 ++-- man/VHF.Rd | 1 - tests/unitTests/output.trend.rda |binary 22 files changed, 75 insertions(+), 59 deletions(-)
Author: Achim Zeileis, Ajay Shah, Ila Patnaik
Title: Exchange Rate Regime Analysis
Description: Exchange rate regression and structural change tools for
estimating, testing, dating, and monitoring (de facto) exchange
rate regimes.
Diff between fxregime versions 0.2-1 dated 2008-12-09 and 0.3-0 dated 2009-08-28
DESCRIPTION | 14 ++++++++------ NEWS | 11 +++++++++++ data/FXRatesCHF.rda |binary inst/CITATION | 4 ++-- inst/doc/CNY.Rnw | 12 ++++++------ inst/doc/CNY.pdf |binary inst/doc/INR.Rnw | 4 ++-- inst/doc/INR.pdf |binary man/fxregimes.Rd | 7 ++++--- 9 files changed, 33 insertions(+), 19 deletions(-)
Author: Stef van Buuren
Diff between mice versions 1.21 dated 2009-03-17 and 2.0 dated 2009-08-27
Title: Multivariate Imputation by Chained Equations
Description: Multiple Imputation using Fully Conditional Specification
mice-1.21/mice/inst/COPYING |only
mice-1.21/mice/inst/ChangeLog |only
mice-1.21/mice/inst/doc/Manual.pdf |only
mice-1.21/mice/inst/doc/Manual.sxw |only
mice-1.21/mice/man/mice.impute.logreg2.Rd |only
mice-1.21/mice/man/mice.impute.norm.improper.Rd |only
mice-2.0/mice/DESCRIPTION | 21
mice-2.0/mice/NAMESPACE |only
mice-2.0/mice/R/mice.R | 1595 +++++++++++++++++-------
mice-2.0/mice/R/zzz.R |only
mice-2.0/mice/data/boys.rda |only
mice-2.0/mice/data/popmis.rda |only
mice-2.0/mice/data/windspeed.rda |only
mice-2.0/mice/inst/CITATION |only
mice-2.0/mice/inst/NEWS |only
mice-2.0/mice/inst/doc/JSScode.r |only
mice-2.0/mice/man/boys.rd |only
mice-2.0/mice/man/cbind.mids.rd |only
mice-2.0/mice/man/complete.Rd | 46
mice-2.0/mice/man/glm.mids.Rd | 9
mice-2.0/mice/man/ibind.rd |only
mice-2.0/mice/man/lm.mids.Rd | 17
mice-2.0/mice/man/md.pairs.Rd |only
mice-2.0/mice/man/md.pattern.Rd | 9
mice-2.0/mice/man/mice-internal.Rd | 25
mice-2.0/mice/man/mice.Rd | 149 +-
mice-2.0/mice/man/mice.impute.2l.norm.rd |only
mice-2.0/mice/man/mice.impute.lda.Rd | 32
mice-2.0/mice/man/mice.impute.logreg.Rd | 30
mice-2.0/mice/man/mice.impute.mean.Rd | 22
mice-2.0/mice/man/mice.impute.norm.Rd | 30
mice-2.0/mice/man/mice.impute.norm.nob.rd |only
mice-2.0/mice/man/mice.impute.passive.Rd | 28
mice-2.0/mice/man/mice.impute.pmm.Rd | 55
mice-2.0/mice/man/mice.impute.polyreg.Rd | 20
mice-2.0/mice/man/mice.impute.sample.Rd | 24
mice-2.0/mice/man/mice.mids.Rd | 22
mice-2.0/mice/man/mids.Rd | 23
mice-2.0/mice/man/mipo.Rd | 17
mice-2.0/mice/man/mira.Rd | 15
mice-2.0/mice/man/nhanes.Rd | 4
mice-2.0/mice/man/nhanes2.Rd | 4
mice-2.0/mice/man/pool.Rd | 101 +
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mice-2.0/mice/man/pool.r.squared.Rd |only
mice-2.0/mice/man/pool.scalar.rd |only
mice-2.0/mice/man/popmis.rd |only
mice-2.0/mice/man/quickpred.Rd |only
mice-2.0/mice/man/rbind.mids.rd |only
mice-2.0/mice/man/windspeed.rd |only
mice-2.0/mice/man/with.mids.Rd |only
51 files changed, 1562 insertions(+), 736 deletions(-)
Author: Justin Donaldson
Title: A simple toolbar GUI for brushing RGL plots
Description: sculpt3d is a GTK+ toolbar that allows for more
interactive control of a dataset inside the RGL plot window.
Controls for simple brushing, highlighting, labeling, and
mouseMode changes are provided by point-and-click rather than
through the R terminal interface.
Diff between sculpt3d versions 0.2 dated 2009-07-31 and 0.2-1 dated 2009-08-27
DESCRIPTION | 8 ++++---- NEWS | 5 ++++- R/sculpt3d-internal.R | 7 +++++-- R/sculpt3d.R | 16 +++++++++++----- man/sculpt3d-package.Rd | 15 ++++----------- man/sculpt3d.Rd | 10 +++++++--- man/sculpt3d.setCallback.Rd | 5 +++-- 7 files changed, 38 insertions(+), 28 deletions(-)
Author: Pierre Chausse
Diff between gmm versions 1.0-7 dated 2009-07-02 and 1.1-0 dated 2009-08-27
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Description: It is a complete suite to estimate models based on moment
conditions. It includes the two step Generalized method of
moments (GMM) of Hansen(1982), the iterated GMM and continuous
updated estimator (CUE) of Hansen-Eaton-Yaron(1996) and several
methods that belong to the Generalized Empirical Likelihood
(GEL) family of estimators, as presented by Smith(1997),
Kitamura(1997), Newey-Smith(2004) and Anatolyev(2005).
gmm-1.0-7/gmm/man/lintest.Rd |only
gmm-1.1-0/gmm/DESCRIPTION | 11
gmm-1.1-0/gmm/NAMESPACE | 24
gmm-1.1-0/gmm/NEWS | 21
gmm-1.1-0/gmm/R/gel.R | 116
gmm-1.1-0/gmm/R/gel_tools.R | 158
gmm-1.1-0/gmm/R/gmm.R | 143
gmm-1.1-0/gmm/R/gmm_tools.R | 204
gmm-1.1-0/gmm/R/plot.gmm.R |only
gmm-1.1-0/gmm/inst/doc/empir.bib | 60
gmm-1.1-0/gmm/inst/doc/gmm_with_R.pdf |11463 ++++++++++++++++++++++++++-------
gmm-1.1-0/gmm/inst/doc/gmm_with_R.rnw | 758 +-
gmm-1.1-0/gmm/man/charStable.Rd |only
gmm-1.1-0/gmm/man/coef.gel.Rd |only
gmm-1.1-0/gmm/man/coef.gmm.Rd |only
gmm-1.1-0/gmm/man/confint.gel.Rd |only
gmm-1.1-0/gmm/man/confint.gmm.Rd |only
gmm-1.1-0/gmm/man/fitted.gel.Rd |only
gmm-1.1-0/gmm/man/fitted.gmm.Rd |only
gmm-1.1-0/gmm/man/formula.gel.Rd |only
gmm-1.1-0/gmm/man/formula.gmm.Rd |only
gmm-1.1-0/gmm/man/gel.Rd | 47
gmm-1.1-0/gmm/man/get_dat.Rd | 5
gmm-1.1-0/gmm/man/get_lamb.Rd | 3
gmm-1.1-0/gmm/man/gmm.Rd | 51
gmm-1.1-0/gmm/man/plot.gel.Rd |only
gmm-1.1-0/gmm/man/plot.gmm.Rd |only
gmm-1.1-0/gmm/man/print.gel.Rd |only
gmm-1.1-0/gmm/man/print.gmm.Rd |only
gmm-1.1-0/gmm/man/print.summary.gel.Rd |only
gmm-1.1-0/gmm/man/print.summary.gmm.Rd |only
gmm-1.1-0/gmm/man/residuals.gel.Rd |only
gmm-1.1-0/gmm/man/residuals.gmm.Rd |only
gmm-1.1-0/gmm/man/summary.gel.Rd | 12
gmm-1.1-0/gmm/man/summary.gmm.Rd | 12
gmm-1.1-0/gmm/man/vcov.gel.Rd |only
gmm-1.1-0/gmm/man/vcov.gmm.Rd |only
gmm-1.1-0/gmm/man/weightsAndrews2.Rd | 2
38 files changed, 10158 insertions(+), 2932 deletions(-)
Author: Brandon Whitcher
Diff between dcemri versions 0.10 dated 2009-08-13 and 0.1.4 dated 2009-08-27
Title: A Package for Medical Image Analysis
Description: A collection of routines and documentation that allows one
to perform a quantitative analysis of dynamic contrast-enhanced
or diffusion-weighted MRI data. Medical imaging data should be
organized using either the Analyze or NIfTI data formats.
DESCRIPTION | 12 -
R/aif.R | 2
R/dcemri_bayes.R | 123 +++++++++-------
R/dcemri_lm.R | 2
R/dcemri_map.R |only
R/dcemri_spline.R | 76 ++++++----
R/firstlib.R | 9 +
R/flipangle.R | 2
R/hotmetal.R | 1
R/kineticmodel.R | 2
R/read.R | 272 ++++++++++++-------------------------
R/tim_colors.R | 1
R/zzz.R |only
inst/doc/dcemri.Rnw | 85 +++++++----
inst/doc/dcemri.pdf |binary
man/aif.Rd | 2
man/buckley.Rd | 2
man/conv_fft.Rd | 2
man/dam.Rd | 2
man/dce_bayes.Rd | 16 +-
man/dce_map.Rd |only
man/dce_spline.Rd | 12 -
man/dcemri-package.Rd |only
man/dcemri.Rd | 6
man/extract.Rd | 2
man/flipangle.Rd | 2
man/ftm.Rd | 2
man/hotmetal.Rd | 2
man/kineticmodel.Rd | 2
man/miscellaneous.Rd | 2
man/read.Rd | 12 +
man/read_analyze.Rd | 2
man/read_nifti.Rd | 8 -
man/shift3D.Rd | 2
man/tim_colors.Rd | 2
man/write.Rd | 6
src/baymri.c | 12 -
tests/Examples/dcemri-Ex.Rout.save | 146 ++++++++++++-------
38 files changed, 433 insertions(+), 398 deletions(-)
Author: Federico Girosi
Diff between YourCast versions 0.9-7 dated 2009-01-16 and 1.1-1 dated 2009-08-27
Title: YourCast
Description: YourCast makes time series cross-sectional forecasts with
multiple cross-sections based on your assumptions. It allows a
variety of smoothing assumptions based on similarities among
the levels, trends, or interactions in the expected value of
the dependent variable rather than the coefficients. YourCast
implements ideas in the book Federico Girosi and Gary King.
DEMOGRAPHIC FORECASTING. Princeton University Press, 2008; see
http://gking.harvard.edu/files/smooth/
YourCast-0.9-7/YourCast/inst/doc/yourcast.idx |only
YourCast-1.1-1/YourCast/DESCRIPTION | 33
YourCast-1.1-1/YourCast/LICENSE |only
YourCast-1.1-1/YourCast/NAMESPACE | 2
YourCast-1.1-1/YourCast/R/fede.funcs.R | 2
YourCast-1.1-1/YourCast/R/lag.gen.R |only
YourCast-1.1-1/YourCast/R/plot.yourcast.R | 11
YourCast-1.1-1/YourCast/R/std.MAP.R | 10
YourCast-1.1-1/YourCast/R/yourcast.R | 7
YourCast-1.1-1/YourCast/R/yourprep.R | 132 -
YourCast-1.1-1/YourCast/inst/doc/copyRd.Rout | 6
YourCast-1.1-1/YourCast/inst/doc/index.shtml | 16
YourCast-1.1-1/YourCast/inst/doc/yourcast.Rnw | 8
YourCast-1.1-1/YourCast/inst/doc/yourcast.pdf | 2706 ++++++++++++--------------
YourCast-1.1-1/YourCast/man/yourprep.Rd | 56
15 files changed, 1499 insertions(+), 1490 deletions(-)
Author: Jouni Lehtonen
Diff between KFAS versions 0.3.2 dated 2009-08-21 and 0.3.3 dated 2009-08-27
Title: Multivariate Kalman filter and smoother, simulation smoother and
forecasting
Description: Fast multivariate Kalman filter, smoother, simulation
smoother and forecasting. Uses exact diffuse initialisation
when distributions of some or all elements of initial state
vector are unknown.
DESCRIPTION | 8 ++++----
R/KFAS.R | 18 ++++++++++++------
man/simsmoother.Rd | 8 ++------
src/simsmoother.f90 | 49 ++++++++++++++++++++++++++++++++++---------------
4 files changed, 52 insertions(+), 31 deletions(-)
Author: Kurt Hornik, David Meyer, Christian Buchta
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and
matrices, based on index arrays and simple triplet
representations, respectively.
Diff between slam versions 0.1-3 dated 2009-08-13 and 0.1-4 dated 2009-08-26
DESCRIPTION | 8 ++++---- R/matrix.R | 11 +++++------ 2 files changed, 9 insertions(+), 10 deletions(-)
Author: Jing Hua Zhao and colleagues with inputs from Kurt Hornik and
Brian Ripley
Title: Genetic analysis package
Description: It is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it
contains functions for sample size calculations of both
population-based and family-based designs, classic twin models,
probability of familial disease aggregation, kinship
calculation, some statistics in linkage analysis, and
association analysis involving one or more genetic markers
including haplotype analysis with or without environmental
covariates.
Diff between gap versions 1.0-17 dated 2009-01-02 and 1.0-20 dated 2009-08-26
ChangeLog | 24 ++++++++++++++++++++++-- DESCRIPTION | 27 +++++++++++++++------------ NAMESPACE | 4 ++-- R/b2r.R |only R/fbsize.R | 19 +++++++++---------- R/metareg.R | 4 ++-- R/mhtplot.R | 8 ++++---- R/mvmeta.R |only inst/doc/gap.Rnw | 11 +++++++---- inst/doc/gap.bib | 16 +++++++++++++++- inst/doc/gap.pdf |binary inst/doc/index.html | 2 +- man/LDkl.Rd | 2 +- man/b2r.Rd |only man/fbsize.Rd | 12 ++++++++---- man/gap-package.Rd | 6 ++++-- man/genecounting.Rd | 22 +++++++++++----------- man/hap.Rd | 42 +++++++++++++++++++++--------------------- man/mhtplot.Rd | 15 +++++++++++---- man/mvmeta.Rd |only src/2ld.c | 2 +- 21 files changed, 134 insertions(+), 82 deletions(-)
Author: Kim Nimon
Diff between yhat versions 1.0-1 dated 2009-08-20 and 1.0-2 dated 2009-08-26
Title: Interpreting Regression Effects
Description: The purpose of this package is to provide methods for
variance partitioning for linear models and canonical
correlation and methods for interpreting regression effects
using beta weights, standardized beta weights, structure
coefficients, and adjusted effect sizes.
yhat-1.0-1/yhat/R/regr.R |only
yhat-1.0-2/yhat/DESCRIPTION | 8 ++++----
yhat-1.0-2/yhat/R/regr.r |only
yhat-1.0-2/yhat/man/yhat-package.Rd | 2 +-
4 files changed, 5 insertions(+), 5 deletions(-)
Author: Jeremy Stephens
Diff between yaml versions 1.0.1 dated 2008-11-14 and 1.0.2 dated 2009-08-26
Title: Methods to convert R to YAML and back
Description: This package implements the Syck YAML parser by _why
(formerly http://www.whytheluckystiff.net/syck) for R. There
are also methods to convert R objects into YAML.
yaml-1.0.1/yaml/.gitignore |only
yaml-1.0.2/yaml/DESCRIPTION | 12 ++++++++----
yaml-1.0.2/yaml/R/as.yaml.R | 7 +++++--
yaml-1.0.2/yaml/inst/CHANGELOG | 3 +++
yaml-1.0.2/yaml/tests/as_yaml_test.R | 6 ++++++
5 files changed, 22 insertions(+), 6 deletions(-)
Author: Stefan Wilhelm
Diff between tmvtnorm versions 0.5-1 dated 2009-05-04 and 0.7-2 dated 2009-08-26
Title: Truncated Multivariate Normal Distribution
Description: Computes truncated multivariate normal probabilities,
quantiles and densities, including one-dimensional and
bivariate marginal densities. Random number generation.
Computes first and second moments (i.e. mean and covariance
matrix) for the double-truncated case.
tmvtnorm-0.5-1/tmvtnorm/.project |only
tmvtnorm-0.5-1/tmvtnorm/Makefile |only
tmvtnorm-0.5-1/tmvtnorm/Rplots.pdf |only
tmvtnorm-0.5-1/tmvtnorm/Rplots.ps |only
tmvtnorm-0.5-1/tmvtnorm/TODO.txt |only
tmvtnorm-0.5-1/tmvtnorm/Verbesserungen.txt |only
tmvtnorm-0.5-1/tmvtnorm/prof.out |only
tmvtnorm-0.5-1/tmvtnorm/prof2.out |only
tmvtnorm-0.5-1/tmvtnorm/readme.txt |only
tmvtnorm-0.5-1/tmvtnorm/rmvnorm.out |only
tmvtnorm-0.5-1/tmvtnorm/rtmvnorm.out |only
tmvtnorm-0.5-1/tmvtnorm/sampling.R |only
tmvtnorm-0.7-2/tmvtnorm/DESCRIPTION | 14 +--
tmvtnorm-0.7-2/tmvtnorm/NAMESPACE | 2
tmvtnorm-0.7-2/tmvtnorm/R/bivariate-marginal-density.R |only
tmvtnorm-0.7-2/tmvtnorm/R/dmvtnorm-marginal.R | 73 ++++++++++++++---
tmvtnorm-0.7-2/tmvtnorm/R/dmvtnorm.R | 40 ++++++---
tmvtnorm-0.7-2/tmvtnorm/R/mtmvnorm.R |only
tmvtnorm-0.7-2/tmvtnorm/R/rtmvnorm.R | 45 +++++++---
tmvtnorm-0.7-2/tmvtnorm/demo/demo1.R | 19 ++++
tmvtnorm-0.7-2/tmvtnorm/man/dmvtnorm-marginal.Rd | 2
tmvtnorm-0.7-2/tmvtnorm/man/dtmvnorm.marginal2.Rd |only
tmvtnorm-0.7-2/tmvtnorm/man/mtmvnorm.Rd |only
tmvtnorm-0.7-2/tmvtnorm/man/tmvtnorm.Rd | 4
tmvtnorm-0.7-2/tmvtnorm/release-notes.txt | 26 ++++++
25 files changed, 186 insertions(+), 39 deletions(-)
Author: Christopher Jackson
Diff between msm versions 0.9.2 dated 2009-07-18 and 0.9.3 dated 2009-08-26
Title: Multi-state Markov and hidden Markov models in continuous time
Description: Functions for fitting general continuous-time Markov and
hidden Markov multi-state models to longitudinal data. Both
Markov transition rates and the hidden Markov output process
can be modelled in terms of covariates. A variety of
observation schemes are supported, including processes observed
at arbitrary times, completely-observed processes, and censored
states.
ChangeLog | 16 +++++++++++++++-
DESCRIPTION | 8 ++++----
R/msm.R | 7 +++----
inst/NEWS | 15 ++++++++++++++-
inst/doc/msm-manual.pdf |binary
man/msm.Rd | 2 +-
src/doc/msm-manual.Rnw | 18 +++++++++---------
tests/simple.R | 17 +++++++++++++++--
8 files changed, 61 insertions(+), 22 deletions(-)
Author: Christian Hennig
Diff between fpc versions 1.2-4 dated 2009-05-06 and 1.2-6 dated 2009-08-26
Title: Fixed point clusters, clusterwise regression and discriminant
plots
Description: Fuzzy and crisp fixed point cluster analysis based on
Mahalanobis distance and linear regression fixed point
clusters. Semi-explorative, semi-model-based clustering
methods, operating on n*p data, do not need prespecification of
number of clusters, produce overlapping clusters. Symmetric and
asymmetric discriminant projections separate groups optimally,
used to visualize the separation of groupings, visual cluster
validation. Clusterwise linear regression by normal mixture
modeling. Cluster validation statistics for distance based
clustering including corrected Rand index. Clusterwise cluster
stability assessment. DBSCAN clustering. Interface functions
for many clustering methods implemented in R. Note that the use
of the package mclust (called by function prabclust) is
protected by a special license, see
http://www.stat.washington.edu/mclust/license.txt, particularly
point 6.
DESCRIPTION | 10 +++++-----
INDEX | 4 ++--
R/clusterboot.R | 4 ++--
man/clusterboot.Rd | 18 ++++++++----------
man/kmeansCBI.Rd | 2 +-
5 files changed, 18 insertions(+), 20 deletions(-)
Author: Nathan Stephens
Diff between hacks versions 0.1-8 dated 2009-05-05 and 0.1-9 dated 2009-08-26
Title: Convenient R Functions
Description: This package contains useful functions.
DESCRIPTION | 8 ++++----
R/mh.r |only
man/mh.rd |only
3 files changed, 4 insertions(+), 4 deletions(-)
Author: Duncan Temple Lang
Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Diff between RCurl versions 1.1-0 dated 2009-08-21 and 1.2-0 dated 2009-08-26
Changes.html | 11 ++++++++++- DESCRIPTION | 6 +++--- R/getURLContent.R | 10 +++++++++- 3 files changed, 22 insertions(+), 5 deletions(-)
Author: Didier Leibovici
Diff between PTAk versions 1.1-20 dated 2009-02-17 and 1.1-22 dated 2009-08-26
Title: Principal Tensor Analysis on k modes
Description: A multiway method to decompose a tensor (array) of any
order, as a generalisation of SVD also supporting non-identity
metrics and penalisations. 2-way SVD with these extensions is
also available. The package includes also some other multiway
methods: PCAn (Tucker-n) and PARAFAC/CANDECOMP with these
extensions.
CITATION |only
DESCRIPTION | 29 +
LICENSE | 729 +++++++++++++++++++++++++++++++++++++++++++++++---
R/PTAk.R | 19 +
man/howtoPTAk.Rd | 17 -
man/preprocessings.Rd | 10
6 files changed, 748 insertions(+), 56 deletions(-)
Author: Beth Atkinson (atkinson@mayo.edu) for pedigree functions. Terry
Therneau (therneau@mayo.edu) for all other functions.
Title: mixed-effects Cox models, sparse matrices, and modeling data
from large pedigrees
Description: coxme: general mixed-effects Cox models; kinship: routines
to create and manipulate n by n matrices that describe the
genetic relationships between n persons; pedigree: create and
plot pedigrees; bdsmatrix: a class of objects for sparse
block-diagonal matrices (which is how kinship matrices are
stored); gchol: generalized cholesky decompositions
Diff between kinship versions 1.1.0-22 dated 2008-12-30 and 1.1.0-23 dated 2009-08-25
ChangeLog | 4 ++++ DESCRIPTION | 17 ++++++++++------- inst/doc/releasep.pdf |only man/coxme.Rd | 2 +- man/plot.pedigree.Rd | 2 +- man/solve.bdsmatrix.Rd | 2 +- man/solve.gchol.Rd | 2 +- man/solve.gchol.bdsmatrix.Rd | 2 +- 8 files changed, 19 insertions(+), 12 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.1.6 dated 2009-08-21 and 2.9.1.7 dated 2009-08-25
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 ++++----
R/epicalc.R | 22 ++++++++++++++++++++++
man/IudFollowup.rd | 2 +-
man/fillin.rd |only
4 files changed, 27 insertions(+), 5 deletions(-)
Author: Marcelino de la Cruz Rot, with contributions of Philip M. Dixon
and Jose M. Blanco-Moreno
Title: Functions for spatial point pattern analysis
Description: Some wrappers, functions and data sets for for spatial
point pattern analysis (mainly based on spatstat), used in the
book "Introduccion al Analisis Espacial de Datos en Ecologia y
Ciencias Ambientales: Metodos y Aplicaciones".
Diff between ecespa versions 1.1-1 dated 2008-11-17 and 1.1-2 dated 2009-08-25
DESCRIPTION | 32 +++++++++++++++++++------------- NAMESPACE |only man/00ecespa.Rd | 20 ++++++++++---------- man/Helianthemum.Rd | 4 ++-- man/K1K2.rd | 5 +++-- man/Kci.Rd | 4 ++-- man/Kinhom.log.rd | 6 +++--- man/Kmm.Rd | 19 ++++++++++--------- man/fig1.Rd | 12 ++++++------ 9 files changed, 55 insertions(+), 47 deletions(-)
Author: Florian Wickelmaier
Diff between eba versions 1.5-3 dated 2009-05-24 and 1.5-4 dated 2009-08-25
Title: Elimination-By-Aspects (EBA) Models
Description: Fitting and testing multi-attribute probabilistic choice
models, especially the Bradley-Terry-Luce (BTL) model (Bradley
& Terry, 1952; Luce, 1959), elimination-by-aspects (EBA) models
(Tversky, 1972), and preference tree (Pretree) models (Tversky
& Sattath, 1979).
ChangeLog | 8 +++++++-
DESCRIPTION | 8 ++++----
inst |only
man/strans.Rd | 13 +++++++------
4 files changed, 18 insertions(+), 11 deletions(-)
Author: M. Lado, A. Mendez, D. Olivieri, L. Rodriguez-Linares, X. Vila
Title: Heart rate variability analysis of ECG data
Description: This is a package for developing heart rate variability
studies of ECG records
Diff between RHRV versions 1.6.2 dated 2009-05-04 and 2.1 dated 2009-08-25
DESCRIPTION | 12 +-- R/AddEpisodes.R |only R/AnalyzeHRbyEpisodes.R |only R/BuildNIHR.R | 19 ++--- R/CalculatePowerBand.R | 45 +++++++----- R/CalculateSpectrogram.R | 17 ++-- R/CreateData.R | 35 --------- R/CreateFreqAnalysis.R |only R/CreateHRVData.R |only R/EditNIHR.R | 32 ++++---- R/FilterNIHR.R | 26 ++++-- R/GenerateEpisodes.R |only R/InterpolateNIHR.R | 60 ++++++++++++---- R/LoadApneaWFDB.R |only R/LoadBeatAscii.R | 22 ++++- R/LoadBeatWFDB.R | 14 ++- R/LoadEpisodesAscii.R | 76 +++++++++++++------- R/LoadHeaderWFDB.R | 9 +- R/PlotHR.R | 62 +++++++++++----- R/PlotNIHR.R | 58 ++++++++++----- R/PlotPowerBand.R | 149 ++++++++++++++++++++++++---------------- R/PlotSpectrogram.R | 10 +- R/ReadFromFile.R | 9 +- R/SplitHRbyEpisodes.R |only R/SplitPowerBandByEpisodes.R |only R/WriteToFile.R | 13 ++- man/AddEpisodes.Rd |only man/AnalyzeHRbyEpisodes.Rd |only man/BuildNIHR.Rd | 11 +- man/CalculatePowerBand.Rd | 54 ++++++-------- man/CalculateSpectrogram.Rd | 34 ++++----- man/CreateData.Rd | 8 +- man/CreateFreqAnalysis.Rd |only man/CreateHRVData.Rd |only man/EditNIHR.Rd | 8 +- man/FilterNIHR.Rd | 6 - man/GenerateEpisodes.Rd |only man/InterpolateNIHR.Rd | 8 +- man/LoadApneaWFDB.Rd |only man/LoadBeatAscii.Rd | 6 - man/LoadBeatWFDB.Rd | 25 +++--- man/LoadEpisodesAscii.Rd | 9 +- man/LoadHeaderWFDB.Rd | 6 - man/PlotHR.Rd | 8 +- man/PlotNIHR.Rd | 10 +- man/PlotPowerBand.Rd | 36 +++++---- man/PlotSpectrogram.Rd | 29 +++---- man/RHRV-package.Rd | 48 +++++++----- man/ReadFromFile.Rd | 4 - man/SplitHRbyEpisodes.Rd |only man/SplitPowerBandByEpisodes.Rd |only man/WriteToFile.Rd | 4 - 52 files changed, 565 insertions(+), 417 deletions(-)
Author: Ulrike Groemping
Title: Wrapper package for design of experiments functionality
Description: This package creates various kinds of designs for
(industrial) experiments. It uses, and sometimes enhances,
design generation routines from other packages. Initially,
response surface designs from package rsm and latin hypercube
samples from package lhs have been implemented.
Diff between DoE.wrapper versions 0.5 dated 2009-08-21 and 0.6 dated 2009-08-25
DESCRIPTION | 8 R/bbd.design.R | 2 R/ccd.augment.R | 1 R/ccd.design.R | 5 inst |only man/ccd.design.Rd | 6 tests/bbd.test.Rout.save | 3 tests/ccd.augment.test.R | 6 tests/ccd.augment.test.Rout.save | 715 +++++++++++++++++++++++++++------------ tests/qua.design.test.R |only tests/qua.design.test.Rout.save |only 11 files changed, 528 insertions(+), 218 deletions(-)
Author: Terry Therneau, original R port by Thomas Lumley
Title: Survival analysis, including penalised likelihood.
Description: survival analysis: descriptive statistics, two-sample
tests, parametric accelerated failure models, Cox model.
Delayed entry (truncation) allowed for all models; interval
censoring for parametric models. Case-cohort designs.
Diff between survival versions 2.35-4 dated 2009-04-01 and 2.35-5 dated 2009-08-25
survival-2.35-4/survival/R/model.frame.coxph.S |only survival-2.35-4/survival/R/model.frame.survreg.S |only survival-2.35-4/survival/R/model.newframe.S |only survival-2.35-5/survival/Changelog |only survival-2.35-5/survival/DESCRIPTION | 8 survival-2.35-5/survival/NAMESPACE | 2 survival-2.35-5/survival/R/Surv.S | 4 survival-2.35-5/survival/R/anova.coxph.S | 76 ++-- survival-2.35-5/survival/R/anova.coxphlist.S | 40 +- survival-2.35-5/survival/R/coxph.S | 39 -- survival-2.35-5/survival/R/coxph.control.S | 9 survival-2.35-5/survival/R/match.ratetable.S | 13 survival-2.35-5/survival/R/plot.cox.zph.S | 8 survival-2.35-5/survival/R/predict.coxph.S | 31 - survival-2.35-5/survival/R/predict.survreg.S | 46 +- survival-2.35-5/survival/R/ratetable.S | 4 survival-2.35-5/survival/R/survfit.coxph.null.S | 4 survival-2.35-5/survival/R/survfitCI.S | 34 - survival-2.35-5/survival/R/survreg.S | 36 + survival-2.35-5/survival/R/survreg.fit.S | 4 survival-2.35-5/survival/man/anova.coxph.Rd | 24 - survival-2.35-5/survival/man/coxph.Rd | 4 survival-2.35-5/survival/man/coxph.control.Rd | 3 survival-2.35-5/survival/man/predict.coxph.Rd | 8 survival-2.35-5/survival/man/predict.survreg.Rd | 9 survival-2.35-5/survival/man/ridge.Rd | 7 survival-2.35-5/survival/man/survfit.Rd | 286 +-------------- survival-2.35-5/survival/man/survfit.formula.Rd |only survival-2.35-5/survival/man/survival-internal.Rd | 42 +- survival-2.35-5/survival/man/survreg.Rd | 2 survival-2.35-5/survival/man/survreg.control.Rd | 4 survival-2.35-5/survival/src/survpenal.c | 2 survival-2.35-5/survival/src/survreg6.c | 5 survival-2.35-5/survival/src/survregc2.c | 2 survival-2.35-5/survival/tests/anova.R |only survival-2.35-5/survival/tests/anova.Rout.save |only survival-2.35-5/survival/tests/book6.R | 7 survival-2.35-5/survival/tests/book6.Rout.save | 10 survival-2.35-5/survival/tests/data.interval |only survival-2.35-5/survival/tests/factor.R |only survival-2.35-5/survival/tests/factor.Rout.save |only survival-2.35-5/survival/tests/fr_cancer.Rout.save | 14 survival-2.35-5/survival/tests/fr_colon.Rout.save | 216 +++++------ survival-2.35-5/survival/tests/fr_kidney.Rout.save | 107 ++--- survival-2.35-5/survival/tests/fr_lung.Rout.save | 4 survival-2.35-5/survival/tests/fr_ovarian.Rout.save | 10 survival-2.35-5/survival/tests/fr_rat1.Rout.save | 20 - survival-2.35-5/survival/tests/fr_rat2.R | 4 survival-2.35-5/survival/tests/fr_rat2.Rout.save | 36 - survival-2.35-5/survival/tests/fr_resid.Rout.save | 377 +++++++++----------- survival-2.35-5/survival/tests/infcox.Rout.save | 4 survival-2.35-5/survival/tests/ovarian.R | 2 survival-2.35-5/survival/tests/ovarian.Rout.save | 5 survival-2.35-5/survival/tests/r_sas.R | 2 survival-2.35-5/survival/tests/r_sas.Rout.save | 9 survival-2.35-5/survival/tests/r_user.R | 17 survival-2.35-5/survival/tests/r_user.Rout.save | 24 + survival-2.35-5/survival/tests/testci2.R |only survival-2.35-5/survival/tests/testci2.Rout.save |only survival-2.35-5/survival/tests/testreg.R | 24 - survival-2.35-5/survival/tests/testreg.Rout.save | 93 +++- 61 files changed, 803 insertions(+), 938 deletions(-)
Author: Michael Hahsler, Christian Buchta and Kurt Hornik
Title: Infrastructure for seriation
Description: Infrastructure for seriation with an implementation of
several seriation/sequencing techniques to reorder matrices,
dissimilarity matrices, and dendrograms. Also contains some
visualizations techniques based on seriation.
Diff between seriation versions 1.0-0 dated 2009-03-24 and 1.0-1 dated 2009-08-25
seriation-1.0-0/seriation/COPYRIGHT |only seriation-1.0-1/seriation/DESCRIPTION | 12 seriation-1.0-1/seriation/NAMESPACE | 5 seriation-1.0-1/seriation/R/dissplot.R | 631 +++++++++++++---------- seriation-1.0-1/seriation/R/permute.R | 17 seriation-1.0-1/seriation/inst/doc/seriation.pdf |binary seriation-1.0-1/seriation/man/dissplot.Rd | 90 ++- seriation-1.0-1/seriation/man/permute.Rd | 1 8 files changed, 453 insertions(+), 303 deletions(-)
Author: Julien Barnier
Diff between rgrs versions 0.2-13 dated 2009-08-13 and 0.2-14 dated 2009-08-25
Title: Functions to make R usage in social sciences easier (in french)
Description: This package provides functions for beginners and social
sciences students or researchers. Currently it includes
functions for cross-tabulation, weighting, results export, and
maps plotting. The documentation and help pages are written in
french.
DESCRIPTION | 10 +++++-----
R/carte.eff.R | 13 ++++++++++---
R/carte.prop.R | 15 +++++++++++----
R/carte.qual.R | 14 +++++++++++---
man/Cartographie.Rd | 25 ++++++++++++++++---------
man/Cartographie.legende.Rd |only
6 files changed, 53 insertions(+), 24 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer and Allan Engelhardt
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification
and regression models
Diff between caret versions 4.19 dated 2009-07-01 and 4.20 dated 2009-08-25
DESCRIPTION | 8 R/createGrid.R | 2 R/createModel.R | 12 R/misc.R | 23 R/predictionFunction.R | 2 R/predictors.R | 5 R/selection.R | 5 inst/CHANGES | 7 inst/doc/caretMisc.pdf | 3445 ++++++++++++++++++++++---------------------- inst/doc/caretSelection.pdf | 2624 ++++++++++++++++----------------- inst/doc/caretTrain.Rnw | 7 inst/doc/caretTrain.pdf |binary inst/doc/caretVarImp.pdf |binary man/train.Rd | 3 14 files changed, 3087 insertions(+), 3056 deletions(-)
Author: John Fox
Diff between car versions 1.2-14 dated 2009-04-23 and 1.2-15 dated 2009-08-25
Title: Companion to Applied Regression
Description: This package accompanies J. Fox, An R and S-PLUS Companion
to Applied Regression, Sage, 2002. The package contains mostly
functions for applied regression, linear models, and
generalized linear models, with an emphasis on regression
diagnostics, particularly graphical diagnostic methods. There
are also some utility functions. With some exceptions, I have
tried not to duplicate capabilities in the basic distribution
of R, nor in widely used packages. Where relevant, the
functions in car are consistent with na.action = na.omit or
na.exclude.
DESCRIPTION | 8 ++++----
R/scatterplot.R | 6 +++---
R/scatterplot.matrix.R | 8 ++++----
R/vif.R | 8 ++++----
inst/CHANGES | 5 +++++
man/car-package.Rd | 4 ++--
man/scatterplot.Rd | 6 ++++--
man/scatterplot.matrix.Rd | 5 +++--
man/vif.Rd | 5 +++--
9 files changed, 32 insertions(+), 23 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.7 dated 2009-08-19 and 0.8 dated 2009-08-25
DESCRIPTION | 8 ++-- NAMESPACE | 2 - R/add.response.R | 2 - R/export.design.R | 19 +++++++---- R/fac.design.R | 4 +- R/fix.design.R | 1 R/html.data.frame.R | 4 +- R/oa.design.R | 11 ++++++ R/plot.design.R | 2 - R/qua.design.R | 65 +++++++++++++++++++++------------------- R/utilities.R | 3 + inst/NEWS | 14 ++++++++ man/add.response.Rd | 8 ++-- man/arrays.Rd | 6 +-- man/class-design-methods.Rd | 16 ++++----- man/class-design.Rd | 36 +++++++++++++++------- man/contr.FrF2.Rd | 3 + man/cross.design.Rd | 8 ++-- man/export.design.Rd | 7 +++- man/fac.design.Rd | 13 +++++--- man/oa.design.Rd | 39 ++++++++++++++---------- man/param.design.Rd | 11 +++--- man/qua.design.Rd | 58 +++++++++++++++++++++++------------ man/represhape.Rd | 5 +-- man/utilities.Rd | 19 +++++++---- tests/test_qua.design.R |only tests/test_qua.design.Rout.save |only 27 files changed, 228 insertions(+), 136 deletions(-)
Author: Pedro Brasil
Diff between DiagnosisMed versions 0.2.2.1 dated 2009-06-19 and 0.2.2.2 dated 2009-08-25
Title: Diagnostic test accuracy evaluation for medical professionals.
Description: DiagnosisMed is a package to analyze data from diagnostic
test accuracy evaluating health conditions. It is being built
to be used by health professionals. This package is able to
estimate sensitivity and specificity from categorical and
continuous test results including some evaluations of
indeterminate results, or compare different categorical tests,
and estimate reasonble cut-offs of tests and display it in a
way commonly used by health professionals. No graphical
interface is avalible yet.
DESCRIPTION | 24 ++++++++++++------------
R/ROC.r | 45 +++++++++++++++++++++------------------------
2 files changed, 33 insertions(+), 36 deletions(-)
Author: Noah Charney, Sydne Record
Title: Jost Diversity Measures for Community Data
Description: This package computes diversity for community data sets
using the methods outlined by Jost (2006, 2007). While there
are differing opinions on the ideal way to calculate diversity
(e.g. Magurran 2004), this method offers the advantage of
providing diversity numbers equivalents, independent alpha and
beta diversities, and the ability to incorporate 'order' (q) as
a continuous measure of the importance of rare species in the
metrics. The functions provided in this package largely
correspond with the equations offered by Jost in the cited
papers. The package computes alpha diversities, beta
diversities, gamma diversities, and similarity indices.
Confidence intervals for diversity measures are calculated
using a bootstrap method described by Chao et al. (2008). For
datasets with many samples (sites, plots), sim.table creates
tables of all pairwise comparisons possible, and for grouped
samples sim.groups calculates pairwise combinations of within-
and between-group comparisons.
Diff between vegetarian versions 1.0 dated 2009-08-09 and 1.1 dated 2009-08-24
DESCRIPTION | 6 +++--- R/vegetarian.R | 11 +++++------ man/H.Rd | 4 +++- man/M.homog.Rd | 2 ++ man/bootstrap.Rd | 9 ++++----- man/d.Rd | 4 +++- man/normalize.rows.Rd | 2 ++ man/turnover.Rd | 1 + man/vegetarian-package.Rd | 10 +++++++--- 9 files changed, 30 insertions(+), 19 deletions(-)
Author: Christophe Pouzat
Title: Spike Train Analysis with R
Description: Functions to analyze neuronal spike trains from a single
neuron or from several neurons recorded simultaneously.
Diff between STAR versions 0.2-2 dated 2009-01-01 and 0.3-2 dated 2009-08-24
STAR-0.2-2/STAR/inst/doc/PouzatChaffiol_STARdraft.Rnw |only STAR-0.2-2/STAR/inst/doc/PouzatChaffiol_STARdraft.bib |only STAR-0.2-2/STAR/inst/doc/PouzatChaffiol_STARdraft.pdf |only STAR-0.2-2/STAR/inst/doc/sc1.png |only STAR-0.2-2/STAR/inst/doc/sc2.png |only STAR-0.2-2/STAR/inst/doc/sc3.png |only STAR-0.2-2/STAR/inst/doc/summaryMC.rda |only STAR-0.3-2/STAR/ChangeLog | 17 +++++- STAR-0.3-2/STAR/DESCRIPTION | 13 ++-- STAR-0.3-2/STAR/NAMESPACE | 24 ++++++++ STAR-0.3-2/STAR/R/plot.ssanova.R |only STAR-0.3-2/STAR/R/plotEtAlquickPredict.R |only STAR-0.3-2/STAR/R/predictLogProb.R |only STAR-0.3-2/STAR/R/quickPredict.R |only STAR-0.3-2/STAR/R/reportHTML.spikeTrain.R | 9 ++- STAR-0.3-2/STAR/R/variableTransformation.R |only STAR-0.3-2/STAR/inst/doc/IEwSTARshort.Rnw |only STAR-0.3-2/STAR/inst/doc/IEwSTARshort.pdf |only STAR-0.3-2/STAR/inst/doc/auto |only STAR-0.3-2/STAR/man/changeScale.Rd |only STAR-0.3-2/STAR/man/mkAR.Rd |only STAR-0.3-2/STAR/man/mkGLMdf.Rd | 51 +++++++++--------- STAR-0.3-2/STAR/man/mkM2U.Rd |only STAR-0.3-2/STAR/man/plot.quickPredict.Rd |only STAR-0.3-2/STAR/man/plot.ssanova.Rd |only STAR-0.3-2/STAR/man/predictLogProb.Rd |only STAR-0.3-2/STAR/man/quickPredict.Rd |only STAR-0.3-2/STAR/man/reportHTML.Rd | 1 STAR-0.3-2/STAR/man/rexpMLE.Rd | 1 29 files changed, 80 insertions(+), 36 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97-6 dated 2009-08-21 and 0.97-7 dated 2009-08-24
DESCRIPTION | 8 ++++---- R/FrF2.R | 26 +++++++++++++++++++++----- R/pb.R | 8 +++++++- inst/NEWS | 8 ++++++++ man/FrF2.Rd | 15 +++++++++++---- man/pb.Rd | 11 ++++++++++- 6 files changed, 61 insertions(+), 15 deletions(-)
Author: Marco Scutari
Title: Bayesian network structure learning
Description: Bayesian network structure learning via constraint-based
(also known as 'conditional independence'), score-based and
hybrid algorithms. This package implements the Grow-Shrink (GS)
algorithm, the Incremental Association (IAMB) algorithm, the
Interleaved-IAMB (Inter-IAMB) algorithm, the Fast-IAMB
(Fast-IAMB) algorithm, the Max-Min Parents and Children (MMPC)
algorithm, the Hill-Climbing (HC) greedy search algorithm, the
Max-Min Hill-Climbing (MMHC) algorithm for both discrete and
Gaussian networks, along with many score functions and
conditional independence tests. Some utility functions (model
comparison and manipulation, random data generation, arc
orientation testing, simple and advanced plots) are included,
as well as basic parametric and bootstrap inference functions.
Diff between bnlearn versions 1.5 dated 2009-07-21 and 1.6 dated 2009-08-24
Changelog | 21 + DESCRIPTION | 27 +- NAMESPACE | 2 R/backend-indep.R | 350 ++++++++++++++------------------ R/backend-score.R | 378 +--------------------------------- R/choose.direction.R | 10 R/cpdag.R | 2 R/fit.R | 12 - R/frontend-amat.R | 2 R/frontend-arcs.R | 2 R/frontend-fit.R | 2 R/frontend-graph.R | 4 R/frontend-lattice.R | 10 R/frontend-learning.R | 27 ++ R/frontend-plot.R | 4 R/frontend-print.R | 22 +- R/frontend-score.R | 11 - R/frontend-strength.R | 15 - R/globals.R | 9 R/graphviz.R | 4 R/hill-climbing.R | 514 +++++++++++++---------------------------------- R/inter-iamb.R | 16 - R/lattice.R | 12 - R/learning-algorithms.R | 89 ++++++-- R/scores.R | 2 R/utils-arcs.R | 12 - R/utils-graph.R | 6 R/utils-misc.R | 11 + R/utils-sanitization.R | 15 + R/utils-tests.R | 4 inst/bibtex/bnlearn.bib | 2 man/alarm.Rd | 4 man/arc.strength.Rd | 22 +- man/arcops.Rd | 82 ------- man/bn.class.Rd | 16 + man/bn.fit.class.Rd | 4 man/bn.fit.methods.Rd | 60 ++--- man/bn.fit.plots.Rd | 18 - man/bn.strength-class.Rd | 4 man/bnboot.Rd | 8 man/bnlearn-package.Rd | 55 +++-- man/choose.direction.Rd | 6 man/constraint.Rd | 3 man/cpdag.Rd | 8 man/gaussian-test.Rd | 4 man/graphviz.plot.Rd | 2 man/hc.Rd | 3 man/hybrid.Rd |only man/lizards.Rd | 8 man/mb.Rd | 2 man/mmpc.Rd | 3 man/score.Rd | 2 man/strength.plot.Rd | 2 src/bind.c |only src/cache.structure.c | 11 - src/common.h | 2 src/graph.generation.c | 11 - src/hc.cache.lookup.c | 503 +++++++++++++++++++++++++++++++++++++++++++-- src/linear.correlation.c | 3 59 files changed, 1196 insertions(+), 1247 deletions(-)
Author: Alex Couture-Beil
Diff between rjson versions 0.1.5 dated 2009-04-26 and 0.1.6 dated 2009-08-24
Title: JSON for R
Description: Converts R object into JSON objects and vice-versa
DESCRIPTION | 6 +++---
R/json.R | 16 +++++++++++++---
inst/changelog.txt |only
inst/doc/json_rpc_server.pdf |binary
man/toJSON.Rd | 5 +++++
5 files changed, 21 insertions(+), 6 deletions(-)
Author: Rajarshi Guha
Diff between rcdk versions 2.9.3 dated 2009-07-18 and 2.9.4 dated 2009-08-24
Title: rcdk - Interface to the CDK Libraries
Description: This package allows the user to access functionality in
the CDK, a Java framework for cheminformatics. This allows the
user to load molecules, evaluate fingerprints, calculate
molecular descriptors and so on. In addition the CDK API allows
the user to view structures in 2D.
DESCRIPTION | 8 -
inst/cont/rcdk.jar |binary
inst/doc/rcdk.pdf | 234 +++++++++++++++++++++++++----------------------------
3 files changed, 117 insertions(+), 125 deletions(-)
Author: Guido van Steen
Title: dataframes2xls writes data frames to xls files
Description: dataframes2xls writes data frames to xls files. It
supports multiple sheets and basic formatting.
Diff between dataframes2xls versions 0.4.3 dated 2009-08-20 and 0.4.4 dated 2009-08-24
DESCRIPTION | 8 ++++---- LICENSE | 4 +++- R/write.xls.R | 14 +++++++------- inst/doc/LICENSE | 2 +- inst/doc/README | 2 +- inst/python/csv2xls.py | 4 +++- 6 files changed, 19 insertions(+), 15 deletions(-)
More information about dataframes2xls at CRAN
Permanent link
Author: Adrian Baddeley
Diff between spatstat versions 1.16-1 dated 2009-07-27 and 1.16-2 dated 2009-08-23
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point
Patterns, including multitype/marked points and spatial
covariates, in any two-dimensional spatial region. Contains
functions for plotting spatial data, exploratory data analysis,
model-fitting, simulation, spatial sampling, model diagnostics,
and formal inference. Data types include point patterns, line
segment patterns, spatial windows, and pixel images. Point
process models can be fitted to point pattern data. Cluster
type models are fitted by the method of minimum contrast. Very
general Gibbs point process models can be fitted to point
pattern data using a function ppm similar to lm or glm. Models
may include dependence on covariates, interpoint interaction
and dependence on marks. Fitted models can be simulated
automatically. Also provides facilities for formal inference
(such as chi-squared tests) and model diagnostics (including
simulation envelopes, residuals, residual plots and Q-Q plots).
spatstat-1.16-1/spatstat/man/00spatstat.Rd |only
spatstat-1.16-1/spatstat/man/areadiff.Rd |only
spatstat-1.16-2/spatstat/DESCRIPTION | 8
spatstat-1.16-2/spatstat/INDEX | 12
spatstat-1.16-2/spatstat/R/Kmeasure.R | 43 -
spatstat-1.16-2/spatstat/R/alltypes.R | 4
spatstat-1.16-2/spatstat/R/areadiff.R | 94 ++
spatstat-1.16-2/spatstat/R/areainter.R | 13
spatstat-1.16-2/spatstat/R/as.im.R | 135 ++--
spatstat-1.16-2/spatstat/R/bermantest.R | 75 ++
spatstat-1.16-2/spatstat/R/discarea.R |only
spatstat-1.16-2/spatstat/R/envelope.R | 244 +++++--
spatstat-1.16-2/spatstat/R/istat.R | 4
spatstat-1.16-2/spatstat/R/options.R | 5
spatstat-1.16-2/spatstat/R/pixellate.R |only
spatstat-1.16-2/spatstat/R/plot.fv.R | 2
spatstat-1.16-2/spatstat/R/ppmclass.R | 4
spatstat-1.16-2/spatstat/R/ppp.S | 7
spatstat-1.16-2/spatstat/R/rmhResolveTypes.R | 53 -
spatstat-1.16-2/spatstat/R/tess.R | 25
spatstat-1.16-2/spatstat/R/util.S | 14
spatstat-1.16-2/spatstat/R/xypolygon.S | 4
spatstat-1.16-2/spatstat/inst/doc/shapefiles.pdf | 732 ++++++++++++-----------
spatstat-1.16-2/spatstat/man/areaGain.Rd |only
spatstat-1.16-2/spatstat/man/areaLoss.Rd |only
spatstat-1.16-2/spatstat/man/as.im.Rd | 43 -
spatstat-1.16-2/spatstat/man/as.ppp.Rd | 8
spatstat-1.16-2/spatstat/man/bermantest.Rd | 8
spatstat-1.16-2/spatstat/man/dilated.areas.Rd |only
spatstat-1.16-2/spatstat/man/discpartarea.Rd |only
spatstat-1.16-2/spatstat/man/envelope.Rd | 42 +
spatstat-1.16-2/spatstat/man/internal.Rd | 2
spatstat-1.16-2/spatstat/man/pixellate.Rd | 98 +--
spatstat-1.16-2/spatstat/man/pixellate.owin.Rd |only
spatstat-1.16-2/spatstat/man/pixellate.ppp.Rd |only
spatstat-1.16-2/spatstat/man/plot.bermantest.Rd |only
spatstat-1.16-2/spatstat/man/spatstat-package.Rd |only
spatstat-1.16-2/spatstat/src/areadiff.c | 231 ++++++-
spatstat-1.16-2/spatstat/src/discarea.c | 6
spatstat-1.16-2/spatstat/src/poly2im.c | 248 +++++++
40 files changed, 1446 insertions(+), 718 deletions(-)
Author: R port by Douglas Bates
Diff between EngrExpt versions 0.1-6 dated 2009-05-06 and 0.1-8 dated 2009-08-23
Title: Data sets from "Introductory Statistics for Engineering
Experimentation"
Description: Datasets from Nelson, Coffin and Copeland "Introductory
Statistics for Engineering Experimentation" (Elsevier, 2003)
with sample code.
ChangeLog | 33 +++++++++++++++++++++++++++++++++
DESCRIPTION | 10 ++++------
man/absorb.Rd | 4 ++--
man/adhesion.Rd | 37 ++++++++++++++++++++++++-------------
man/applicat.Rd | 20 ++++++++++++--------
man/assay.Rd | 9 +++++----
man/bacteria.Rd | 10 +++++-----
man/bath.Rd | 10 ++++++----
man/bright.Rd | 7 +++++--
man/calcium.Rd | 4 ++++
man/caliper.Rd | 5 +++++
man/ccthickn.Rd | 16 +++++++++++-----
man/cheese.Rd | 2 +-
man/chemreac.Rd | 2 +-
man/curl.Rd | 9 ++++++++-
man/defoam.Rd | 2 ++
man/deink.Rd | 5 +++++
man/deink2.Rd | 13 +++++++++++--
man/dhaze.Rd | 8 +++++++-
man/diagnostic.Rd | 9 +++++++++
man/drought.Rd | 3 ++-
man/drums.Rd | 4 ++++
man/dry.Rd | 8 +++++++-
man/epoxy.Rd | 6 ++++++
man/exposure.Rd | 6 ++++++
man/fbuild.Rd | 5 +++++
man/fillweight.Rd | 6 ++++--
man/fish.Rd | 12 +++++++++++-
man/fluoride.Rd | 4 ++--
man/gloss.Rd | 10 +++++++++-
man/labcomp.Rd | 16 ++++++++++++++--
man/lw.Rd | 11 +++++++++--
man/lwsw.Rd | 5 +++++
man/moisture.Rd | 7 +++++++
man/mw.Rd | 7 +++++++
man/odor.Rd | 6 ++++++
man/ph.Rd | 13 ++++++++++++-
man/phmeas.Rd | 4 ++++
man/pigment.Rd | 13 +++++++++++--
man/protein.Rd | 6 +++++-
man/purity.Rd | 12 ++++++++----
man/railcar.Rd | 6 ++++++
man/railcar3.Rd | 6 ++++++
man/ratings.Rd | 6 ++++++
man/ratings2.Rd | 7 +++++++
man/reflect.Rd | 12 ++++++++----
man/safety.Rd | 3 ++-
man/sales.Rd | 5 +++--
man/separate.Rd | 6 ++++++
man/soap.Rd | 14 ++++++++++----
man/stab.Rd | 11 ++++++++---
man/stretch.Rd | 8 ++++++++
man/tablets.Rd | 6 ++++++
man/tennis.Rd | 3 ++-
man/thinfilm.Rd | 8 ++++++++
man/timetemp.Rd | 9 ++++++++-
man/tpaste.Rd | 1 +
man/urine.Rd | 4 ++++
man/uvcoatin.Rd | 19 ++++++++++++++++---
man/wash.Rd | 9 +++++++++
man/webtraff.Rd | 3 ++-
man/yellow.Rd | 5 +++--
62 files changed, 433 insertions(+), 97 deletions(-)
Author: Simon Urbanek
Diff between rJava versions 0.6-3 dated 2009-06-16 and 0.7-0 dated 2009-08-23
Title: Low-level R to Java interface
Description: Low-level interface to Java VM very much like .C/.Call and
friends. Allows creation of objects, calling methods and
accessing fields.
DESCRIPTION | 4 -
NAMESPACE | 4 +
NEWS | 25 +++++++++
R/call.R | 4 -
R/jfirst.R | 2
R/jinit.R | 5 +
R/reflection.R | 88 +++++++++++++++++++++--------------
R/with.R |only
inst/java/RJavaTools.class |only
inst/java/RJavaTools.java |only
inst/java/boot/RJavaClassLoader.java |only
jri/Mutex.java | 2
jri/NEWS | 6 +-
jri/REXP.java | 2
jri/RMainLoopCallbacks.java | 10 +--
jri/RVector.java | 6 +-
jri/Rengine.java | 2
jri/src/Rengine.c | 2
man/accessOp.Rd | 7 +-
man/with.Rd |only
src/java/RJavaTools.class |only
src/java/RJavaTools.java |only
src/rJava.h | 3 -
23 files changed, 115 insertions(+), 57 deletions(-)
Author: Andrea Spano'
Title: Control Charts, Capability and Distribution Identification
Description: qAnalyst performs: control charts for variables and
attributes according to Douglas C. Montgomery Introduction to
Statistical Quality Control book, Capability analysis for
normal and non - normal distributions and Distributions
Identification
Diff between qAnalyst versions 0.5.5 dated 2009-07-18 and 0.6.0 dated 2009-08-23
DESCRIPTION | 10 +-- R/plot.capability.R | 144 +++++++++++++++++++------------------------- R/plot.spc.R | 80 ++++++++++-------------- R/testFun.R | 2 README | 5 - man/andersonDarlingFun.Rd | 2 man/capabilityNormal.Rd | 4 - man/getParameterFun.Rd | 4 - man/invCpFun.Rd | 2 man/paretoChart.Rd | 2 man/plot.spc.Rd | 7 +- man/print.spc.Rd | 4 - man/print.transformation.Rd | 8 +- man/probplot.Rd | 4 - man/spc.Rd | 4 - man/summary.infoFun.Rd | 4 - man/testFun.Rd | 48 ++++++++------ 17 files changed, 157 insertions(+), 177 deletions(-)
Author: John Verzani
Title: Toolkit implementation of gWidgets API for use with web pages
Description: Port of gWidgets API to www using a local server or
RApache (http://biostat.mc.vanderbilt.edu/rapache/index.html)
to link R with a web page, The Ext JavaScript libararies (3.0
or greater) are used to create and manipulate widgets.
(www.extjs.com)
Diff between gWidgetsWWW versions 0.0-9 dated 2009-08-16 and 0.0-11 dated 2009-08-23
gWidgetsWWW-0.0-11/gWidgetsWWW/DESCRIPTION | 17 gWidgetsWWW-0.0-11/gWidgetsWWW/NAMESPACE | 11 gWidgetsWWW-0.0-11/gWidgetsWWW/NEWS | 21 gWidgetsWWW-0.0-11/gWidgetsWWW/R/LocalVersion.R |only gWidgetsWWW-0.0-11/gWidgetsWWW/R/aaa.R | 90 gWidgetsWWW-0.0-11/gWidgetsWWW/R/common.R | 29 gWidgetsWWW-0.0-11/gWidgetsWWW/R/gedit.R | 2 gWidgetsWWW-0.0-11/gWidgetsWWW/R/ggooglemaps.R | 37 gWidgetsWWW-0.0-11/gWidgetsWWW/R/ghtml.R | 12 gWidgetsWWW-0.0-11/gWidgetsWWW/R/gprocessingjs.R | 37 gWidgetsWWW-0.0-11/gWidgetsWWW/R/gsvg.R | 2 gWidgetsWWW-0.0-11/gWidgetsWWW/R/gtext.R | 11 gWidgetsWWW-0.0-11/gWidgetsWWW/R/gwindow.R | 9 gWidgetsWWW-0.0-11/gWidgetsWWW/R/icons.R | 3 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/Examples/brew-gWidgets.brew | 12 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/Examples/ex-clt.R | 35 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/Examples/ex-ggooglemaps.R | 5 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/Examples/ex-gprocessingjs.R |only gWidgetsWWW-0.0-11/gWidgetsWWW/inst/Examples/ex-index.R | 33 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/Examples/ex-t-test.R | 4 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/Examples/ex-widgets.R | 4 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/Examples/ex-windows.R | 2 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/basehtml |only gWidgetsWWW-0.0-11/gWidgetsWWW/inst/doc/gWidgetsWWW.Rnw | 16 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/doc/gWidgetsWWW.pdf | 975 +++-- gWidgetsWWW-0.0-11/gWidgetsWWW/inst/doc/gWidgetsWWW.pdf.mine |only gWidgetsWWW-0.0-11/gWidgetsWWW/inst/doc/gWidgetsWWW.pdf.r100 |only gWidgetsWWW-0.0-11/gWidgetsWWW/inst/doc/gWidgetsWWW.pdf.r101 |only gWidgetsWWW-0.0-11/gWidgetsWWW/inst/javascript/README | 19 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/javascript/ext.ux.canvas.js |only gWidgetsWWW-0.0-11/gWidgetsWWW/inst/javascript/processing-local.js |only gWidgetsWWW-0.0-11/gWidgetsWWW/inst/javascript/processing.js | 1702 ---------- gWidgetsWWW-0.0-11/gWidgetsWWW/inst/javascript/processinginit.js | 1588 --------- gWidgetsWWW-0.0-11/gWidgetsWWW/inst/scripts/gWidgetsWWWAJAX.R | 3 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/scripts/gWidgetsWWWrun.R | 10 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/scripts/session.R | 18 gWidgetsWWW-0.0-11/gWidgetsWWW/inst/tcl |only gWidgetsWWW-0.0-11/gWidgetsWWW/man/gWidgetsWWW-package.Rd | 87 gWidgetsWWW-0.0-11/gWidgetsWWW/man/ggooglemaps.Rd | 4 gWidgetsWWW-0.0-11/gWidgetsWWW/man/gprocessingjs.Rd | 35 gWidgetsWWW-0.0-11/gWidgetsWWW/man/localServerStart.Rd |only gWidgetsWWW-0.0-9/gWidgetsWWW/inst/images |only 42 files changed, 1047 insertions(+), 3786 deletions(-)
Author: Renan Cortes
Diff between RcmdrPlugin.qcc versions 1.0-5 dated 2009-05-08 and 1.0-6 dated 2009-08-23
More information about RcmdrPlugin.qcc at CRAN
Title: Rcmdr qcc Plug-In
Description: This package provides an Rcmdr "plug-in" based on the qcc
package, and it provides an integration between the user and
the tools of SPC.
DESCRIPTION | 6 +++---
R/RcmdrPlugin.qcc.r | 2 +-
man/RcmdrPlugin.qcc-package.Rd | 2 +-
3 files changed, 5 insertions(+), 5 deletions(-)
Permanent link
Author: John Maindonald and W. John Braun
Title: Data Analysis And Graphics data and functions
Description: various data sets used in examples and exercises in the
book Maindonald, J.H. and Braun, W.J. (2003, 2007) "Data
Analysis and Graphics Using R".
Diff between DAAG versions 0.99-3 dated 2009-06-05 and 1.00 dated 2009-08-23
DESCRIPTION | 10 +++++----- INDEX | 2 +- R/CVbinary.R | 2 +- R/compareTreecalcs.R | 2 ++ R/component.residual.R | 2 +- R/cv.binary.R | 2 +- R/onesamp.R | 2 +- R/oneway.plot.R | 2 +- R/onewayPlot.R | 2 +- inst/seedrates.txt |only man/CVbinary.Rd | 5 ++--- man/component.residual.Rd | 2 +- man/dengue.Rd | 6 +++--- man/onesamp.Rd | 2 +- man/oneway.plot.Rd | 2 +- man/onewayPlot.Rd | 2 +- man/rice.Rd | 4 ++-- man/sampdist.Rd | 3 --- 18 files changed, 25 insertions(+), 27 deletions(-)
Author: Edgar Acuna
Diff between dprep versions 2.0 dated 2008-04-14 and 2.1 dated 2009-08-21
Title: Data preprocessing and visualization functions for
classification
Description: Functions for normalization, handling of missing values,
discretization, outlier detection, feature selection, and
visualization
dprep-2.0/dprep/Read-and-delete-me |only
dprep-2.1/dprep/DESCRIPTION | 34 +++++++++++++++++++---------------
dprep-2.1/dprep/R/assig.R | 2 +-
dprep-2.1/dprep/R/baysout.R | 9 ++++++---
dprep-2.1/dprep/R/ce.impute.R | 2 +-
dprep-2.1/dprep/R/ce.knn.imp.R | 2 +-
dprep-2.1/dprep/R/ce.mimp.R | 2 +-
dprep-2.1/dprep/R/chiMerge.R | 2 +-
dprep-2.1/dprep/R/circledraw.R | 2 +-
dprep-2.1/dprep/R/clean.R | 2 +-
dprep-2.1/dprep/R/closest.R | 2 +-
dprep-2.1/dprep/R/combinations.R | 2 +-
dprep-2.1/dprep/R/crossval.R | 2 +-
dprep-2.1/dprep/R/cv10knn2.R | 2 +-
dprep-2.1/dprep/R/cv10lda2.R | 2 +-
dprep-2.1/dprep/R/cv10log.R | 2 +-
dprep-2.1/dprep/R/cv10mlp.R | 2 +-
dprep-2.1/dprep/R/cv10rpart2.R | 2 +-
dprep-2.1/dprep/R/decscale.R | 2 +-
dprep-2.1/dprep/R/disc.1r.R | 2 +-
dprep-2.1/dprep/R/disc.ef.R | 2 +-
dprep-2.1/dprep/R/disc.ew.R | 2 +-
dprep-2.1/dprep/R/disc.mentr.R | 2 +-
dprep-2.1/dprep/R/disc2.R | 2 +-
dprep-2.1/dprep/R/discretevar.R | 2 +-
dprep-2.1/dprep/R/dist.to.knn.R | 2 +-
dprep-2.1/dprep/R/distan2.R | 2 +-
dprep-2.1/dprep/R/distancia.R | 2 +-
dprep-2.1/dprep/R/ec.knnimp.R | 2 +-
dprep-2.1/dprep/R/finco.R | 2 +-
dprep-2.1/dprep/R/imagmiss.R | 2 +-
dprep-2.1/dprep/R/inconsist.R | 2 +-
dprep-2.1/dprep/R/knneigh.vect.R | 2 +-
dprep-2.1/dprep/R/lofactor.R | 2 +-
dprep-2.1/dprep/R/lvf.R | 2 +-
dprep-2.1/dprep/R/mahaout.R | 4 ++--
dprep-2.1/dprep/R/mardia.R | 2 +-
dprep-2.1/dprep/R/maxdist.R | 2 +-
dprep-2.1/dprep/R/maxlof.R | 2 +-
dprep-2.1/dprep/R/midpoints.R | 2 +-
dprep-2.1/dprep/R/mmnorm.R | 2 +-
dprep-2.1/dprep/R/mo3.R | 2 +-
dprep-2.1/dprep/R/mo4.R | 2 +-
dprep-2.1/dprep/R/moda.R | 2 +-
dprep-2.1/dprep/R/near1.R | 2 +-
dprep-2.1/dprep/R/near2.R | 2 +-
dprep-2.1/dprep/R/nnmiss.R | 2 +-
dprep-2.1/dprep/R/outbox.R | 2 +-
dprep-2.1/dprep/R/parallelplot.R | 4 ++--
dprep-2.1/dprep/R/radviz2d.R | 2 +-
dprep-2.1/dprep/R/rangenorm.R | 2 +-
dprep-2.1/dprep/R/reachability.R | 2 +-
dprep-2.1/dprep/R/redundancy.R | 2 +-
dprep-2.1/dprep/R/relief.R | 2 +-
dprep-2.1/dprep/R/reliefcat.R | 2 +-
dprep-2.1/dprep/R/reliefcont.R | 2 +-
dprep-2.1/dprep/R/robout.R | 4 ++--
dprep-2.1/dprep/R/row.matches.R | 2 +-
dprep-2.1/dprep/R/sbs1.R | 2 +-
dprep-2.1/dprep/R/score.R | 2 +-
dprep-2.1/dprep/R/sffs.R | 2 +-
dprep-2.1/dprep/R/sfs.R | 2 +-
dprep-2.1/dprep/R/sfs1.R | 2 +-
dprep-2.1/dprep/R/signorm.R | 2 +-
dprep-2.1/dprep/R/softmaxnorm.R | 2 +-
dprep-2.1/dprep/R/starcoord.R | 2 +-
dprep-2.1/dprep/R/surveyplot.R | 2 +-
dprep-2.1/dprep/R/tchisq.R | 2 +-
dprep-2.1/dprep/R/top.R | 26 ++++++++++++++++++++++----
dprep-2.1/dprep/R/vvalen.R | 2 +-
dprep-2.1/dprep/R/vvalen1.R | 2 +-
dprep-2.1/dprep/R/znorm.R | 2 +-
dprep-2.1/dprep/data/breastw.rda |binary
dprep-2.1/dprep/data/bupa.rda |binary
dprep-2.1/dprep/data/censusn.rda |binary
dprep-2.1/dprep/data/colon.rda |binary
dprep-2.1/dprep/data/diabetes.rda |binary
dprep-2.1/dprep/data/eje1dis.rda |binary
dprep-2.1/dprep/data/hawkins.rda |binary
dprep-2.1/dprep/data/heartc.rda |binary
dprep-2.1/dprep/data/hepatitis.rda |binary
dprep-2.1/dprep/data/ionosphere.rda |binary
dprep-2.1/dprep/data/my.iris.rda |binary
dprep-2.1/dprep/data/pp.golub.rda |binary
dprep-2.1/dprep/data/sonar.rda |binary
dprep-2.1/dprep/data/srbct.rda |binary
dprep-2.1/dprep/data/vehicle.rda |binary
dprep-2.1/dprep/man/rangenorm.Rd | 2 +-
dprep-2.1/dprep/man/robout.Rd | 6 +++---
89 files changed, 122 insertions(+), 97 deletions(-)
More information about RcmdrPlugin.qual at CRAN
Permanent link
Author: Jon Clayden
Diff between tractor.base versions 1.1.0 dated 2009-06-16 and 1.2.0 dated 2009-08-21
Title: Basic functions for the TractoR (tractography with R) bundle
Description: The tractor.base package consists of functions for working
with magnetic resonance images. It can read and write image
files stored in Analyze, NIfTI and DICOM formats (DICOM support
is read only), generate images for use as regions of interest,
and manipulate and visualise images.
DESCRIPTION | 10 +++++-----
R/bootstrap.R | 42 ++++++++++++++++++++++++++++++++++++++++++
R/dicom.R | 20 ++++++++++++--------
R/misc.R | 47 +++++++++++++++++++++++++++++++++++------------
man/list.object.Rd | 2 +-
man/metadata.dicom.Rd | 3 ++-
man/undocumented.Rd | 1 +
7 files changed, 98 insertions(+), 27 deletions(-)
Author: Kenneth Knoblauch
Title: Functions for analyzing psychophysical data in R
Description: An assortment of functions that could be useful in
analyzing data from pyschophysical experiments. It includes
functions for calculating d' from several different
experimental designs, links for m-alternative forced-choice
(mafc) data to be used with the binomial family in glm (and
possibly other contexts) and self-Start functions for
estimating gamma values for CRT screen calibrations.
Diff between psyphy versions 0.1-1 dated 2009-01-26 and 0.1-2 dated 2009-08-21
DESCRIPTION | 16 ++++++++++++---- inst/NEWS | 4 +++- man/RGB.Rd | 7 +------ man/dprime.oddity.Rd | 2 -- man/ecc2.Rd | 10 +++------- man/psyphy-package.Rd | 8 +------- man/summary.lambda.Rd | 2 -- 7 files changed, 20 insertions(+), 29 deletions(-)
Author: Charles Kooperberg
Diff between polspline versions 1.1.3 dated 2009-06-25 and 1.1.4 dated 2009-08-21
Title: Polynomial spline routines
Description: Routines for the polynomial spline fitting routines hazard
regression, hazard estimation with flexible tails, logspline,
lspec, polyclass, and polymars, by C. Kooperberg and co-authors
DESCRIPTION | 6 +++---
R/polspline.R | 2 +-
2 files changed, 4 insertions(+), 4 deletions(-)
Author: Fridolin Wild
Title: Latent Semantic Analysis
Description: The basic idea of latent semantic analysis (LSA) is, that
text do have a higher order (=latent semantic) structure which,
however, is obscured by word usage (e.g. through the use of
synonyms or polysemy). By using conceptual indices that are
derived statistically via a truncated singular value
decomposition (a two-mode factor analysis) over a given
document-term matrix, this variability problem can be overcome.
Diff between lsa versions 0.61 dated 2009-02-10 and 0.63 dated 2009-08-21
lsa-0.61/lsa/R/corpus_sample.R |only lsa-0.61/lsa/man/corpus_sample.Rd |only lsa-0.63/lsa/DESCRIPTION | 37 +- lsa-0.63/lsa/HISTORY | 525 +++++++++++++++++---------------- lsa-0.63/lsa/NAMESPACE | 5 lsa-0.63/lsa/R/associate.R |only lsa-0.63/lsa/R/query.R | 4 lsa-0.63/lsa/R/sample.textmatrix.R |only lsa-0.63/lsa/R/textmatrix.R | 16 - lsa-0.63/lsa/data/stopwords_fr.rda |only lsa-0.63/lsa/man/as.textmatrix.Rd | 4 lsa-0.63/lsa/man/associate.Rd |only lsa-0.63/lsa/man/corpora.Rd | 2 lsa-0.63/lsa/man/cosine.Rd | 2 lsa-0.63/lsa/man/dimcalc.Rd | 2 lsa-0.63/lsa/man/foldin.Rd | 2 lsa-0.63/lsa/man/print.textmatrix.Rd | 2 lsa-0.63/lsa/man/query.Rd | 4 lsa-0.63/lsa/man/sample.textmatrix.Rd |only lsa-0.63/lsa/man/stopwords.Rd | 17 - lsa-0.63/lsa/man/summary.textmatrix.Rd | 2 lsa-0.63/lsa/man/textmatrix.Rd | 6 lsa-0.63/lsa/man/triples.Rd | 2 lsa-0.63/lsa/man/weightings.Rd | 2 lsa-0.63/lsa/tests/lsa-tests.R | 8 25 files changed, 342 insertions(+), 300 deletions(-)
Author: Virasakdi Chongsuvivatwong
Diff between epicalc versions 2.9.1.5 dated 2009-07-31 and 2.9.1.6 dated 2009-08-21
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.
DESCRIPTION | 8 ++++----
R/epicalc.R | 6 ++++--
2 files changed, 8 insertions(+), 6 deletions(-)
Author: Peter Gilbert, Ian McKeague, and Yanqing Sun
Title: Continuous mark-specific relative risks for two groups
Description: Estimation and testing of continuous mark-specific
relative risks in two groups as described in Gilbert, P.,
McKeague, I. and Sun, Y. (2008) The 2-sample problem for
failure rates depending on a continuous mark: an application to
vaccine efficacy. Biostatistics 9, 2, 263-276. This package
implements the methods presented in the paper for testing
mark-specific hazards ratios and for estimation of
mark-specific incidence ratios that are cumulative in time or
cumulative in both time and the continuous mark.
Diff between cmprskContin versions 1.1 dated 2009-08-20 and 1.2 dated 2009-08-21
DESCRIPTION | 8 ++++---- NEWS |only configure | 2 +- configure.in | 2 +- man/cmprskContin-package.Rd | 4 ++-- 5 files changed, 8 insertions(+), 8 deletions(-)
Author: Kenneth Knoblauch and Laurence T. Maloney, based in part on C
code written by Laurence T. Maloney and J. N. Yang
Title: Maximum Likelihood Difference Scaling
Description: Difference scaling is a method for scaling perceived
supra-threshold differences. The package contains functions
that allow the user to design and run a difference scaling
experiment, to fit the resulting data by maximum likelihood and
test the internal validity of the estimated scale.
Diff between MLDS versions 0.2-0 dated 2009-08-19 and 0.2-1 dated 2009-08-21
DESCRIPTION | 8 ++++---- inst/NEWS | 3 +++ man/as.mlds.df.Rd | 7 +------ man/ix.mat2df.Rd | 1 - 4 files changed, 8 insertions(+), 11 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97-5 dated 2009-08-21 and 0.97-6 dated 2009-08-21
DESCRIPTION | 6 +++--- R/check.R | 8 +------- R/find.gen.R | 6 ++++-- inst/NEWS | 6 ++++++ 4 files changed, 14 insertions(+), 12 deletions(-)
Author: Ben Bolker
Title: Ecological models and data (book support)
Description: Auxiliary functions and data sets for _Ecological Models
and Data_, a book presenting maximum likelihood estimation and
related topics for ecologists (ISBN 978-0-691-12522-0)
Diff between emdbook versions 1.1.1.1 dated 2008-10-17 and 1.2 dated 2009-08-21
emdbook-1.1.1.1/emdbook/man/traceplot.mcmc.Rd |only emdbook-1.2/emdbook/CITATION |only emdbook-1.2/emdbook/DESCRIPTION | 18 +- emdbook-1.2/emdbook/NEWS | 6 emdbook-1.2/emdbook/R/bayes.R |only emdbook-1.2/emdbook/R/emdbook.R | 172 +++--------------------- emdbook-1.2/emdbook/TODO | 2 emdbook-1.2/emdbook/inst/BUGS/myxogamma.bug |only emdbook-1.2/emdbook/inst/BUGS/negbinom.bug |only emdbook-1.2/emdbook/inst/BUGS/reefgobysurv.bug |only emdbook-1.2/emdbook/inst/BUGS/testmyxo.bug |only emdbook-1.2/emdbook/man/Damsel.Rd | 2 emdbook-1.2/emdbook/man/HPDregionplot.Rd | 2 emdbook-1.2/emdbook/man/dbetabinom.Rd | 9 - emdbook-1.2/emdbook/man/get.emdbook.packages.Rd | 2 emdbook-1.2/emdbook/man/lump.mcmc.list.Rd | 19 ++ emdbook-1.2/emdbook/man/scinot.Rd | 2 17 files changed, 64 insertions(+), 170 deletions(-)
Author: Duncan Temple Lang
Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Diff between RCurl versions 1.0-0 dated 2009-08-19 and 1.1-0 dated 2009-08-21
RCurl-1.0-0/RCurl/CodeGeneration/enum.c.001t.tu |only RCurl-1.0-0/RCurl/ii |only RCurl-1.0-0/RCurl/oo |only RCurl-1.1-0/RCurl/Changes.html | 10 ++++++ RCurl-1.1-0/RCurl/CodeGeneration/foo.html |only RCurl-1.1-0/RCurl/DESCRIPTION | 6 ++-- RCurl-1.1-0/RCurl/R/aclassesEnums.R |only RCurl-1.1-0/RCurl/R/curl.S | 8 ++++- RCurl-1.1-0/RCurl/R/getURLContent.R | 2 - RCurl-1.1-0/RCurl/R/options.S | 10 +++--- RCurl-1.1-0/RCurl/R/xbits.R |only RCurl-1.1-0/RCurl/inst/CurlSSL/cacert.pem |only RCurl-1.1-0/RCurl/inst/CurlSSL/google.pem |only RCurl-1.1-0/RCurl/inst/CurlSSL/logfile |only RCurl-1.1-0/RCurl/inst/CurlSSL/myBundle.crt |only RCurl-1.1-0/RCurl/inst/CurlSSL/ok.R |only RCurl-1.1-0/RCurl/inst/CurlSSL/server.pem |only RCurl-1.1-0/RCurl/inst/doc/fileUploads.html |only RCurl-1.1-0/RCurl/inst/doc/fileUploads.pdf |only RCurl-1.1-0/RCurl/inst/doc/philosophy.html | 36 ++++++++++++------------ RCurl-1.1-0/RCurl/inst/doc/philosophy.pdf |only RCurl-1.1-0/RCurl/man/getBitIndicators.Rd | 2 - RCurl-1.1-0/RCurl/man/getCurlHandle.Rd | 14 ++++++++- RCurl-1.1-0/RCurl/man/getURL.Rd | 9 ++++-- RCurl-1.1-0/RCurl/src/Makevars | 4 +- 25 files changed, 64 insertions(+), 37 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97-4 dated 2009-08-21 and 0.97-5 dated 2009-08-21
DESCRIPTION | 6 +-- R/find.gen.R | 104 ++++++++++++++--------------------------------------------- inst/NEWS | 4 ++ 3 files changed, 33 insertions(+), 81 deletions(-)
Author: Charles Kooperberg
Diff between logspline versions 2.1.2 dated 2009-01-27 and 2.1.3 dated 2009-08-21
Title: Logspline density estimation routines
Description: Routines for the logspline density estimation.
oldlogspline uses the same algorithm as the logspline 1.0.x
package - the Kooperberg and Stone (1992) algorithm (with an
improved interface). The recomended routine logspline uses an
algorithm from Stone et al (1997).
DESCRIPTION | 17 ++++++++++-------
R/logspline.R | 2 +-
2 files changed, 11 insertions(+), 8 deletions(-)
Author: Jouni Lehtonen
Diff between KFAS versions 0.3.1 dated 2009-08-19 and 0.3.2 dated 2009-08-21
Title: Multivariate Kalman filter and smoother, simulation smoother and
forecasting
Description: Fast multivariate Kalman filter, smoother, simulation
smoother and forecasting. Uses exact diffuse initialisation
when distributions of some or all elements of initial state
vector are unknown.
KFAS-0.3.1/KFAS/R/kfas.R |only
KFAS-0.3.2/KFAS/DESCRIPTION | 8 ++++----
KFAS-0.3.2/KFAS/R/KFAS.R |only
3 files changed, 4 insertions(+), 4 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97-3 dated 2009-08-20 and 0.97-4 dated 2009-08-21
DESCRIPTION | 8 +-- R/estimable2fis.R | 2 inst/NEWS | 4 + tests/foldtest.Rout.save | 109 +++++++++++++++++++++++++---------------------- 4 files changed, 68 insertions(+), 55 deletions(-)
Author: Kim Nimon
Diff between yhat versions 1.0-0 dated 2009-07-18 and 1.0-1 dated 2009-08-20
Title: Interpreting Regression Effects
Description: The purpose of this package is to provide methods for
variance partitioning for linear models and canonical
correlation and methods for interpreting regression effects
using beta weights, standardized beta weights, structure
coefficients, and adjusted effect sizes.
DESCRIPTION | 23 +++++++++++++----------
R/canonVariate.R | 1 -
R/effect.size.R |only
R/regr.R |only
man/canonCommonality.Rd | 1 -
man/commonalityCoefficients.Rd | 1 -
man/effect.size.Rd |only
man/regr.Rd |only
man/yhat-package.Rd | 14 ++++++++++----
9 files changed, 23 insertions(+), 17 deletions(-)
Author: Ryan T. Moore
Diff between muRL versions 0.1-1 dated 2009-07-18 and 0.1-2 dated 2009-08-20
Title: Mailmerge using R, LaTeX, and the Web
Description: Provides mailmerge methods for reading spreadsheets of
addresses and other relevant information to create standardized
but customizable letters. Provides a method for mapping US ZIP
codes, including those of letter recipients. Provides a method
for parsing and processing html code from online job postings
of the American Political Science Association.
CHANGELOG | 16 +++++++++++++++-
DESCRIPTION | 18 +++++++++---------
R/apsahtml2csv.R | 4 +++-
R/getdesc.R |only
R/read.murl.R | 10 ++++++----
R/zip.plot.R | 10 +++++++---
data/zips.tab | 2 +-
demo/zip.plot.R | 4 +++-
inst/doc/murlejobs.pdf |binary
man/apsahtml2csv.Rd | 6 ++++--
man/murl-package.Rd | 10 +++++-----
man/read.murl.Rd | 19 +++++++++++++------
man/write.murl.Rd | 10 +++++++---
man/zip.plot.Rd | 15 +++++++++++----
man/zips.Rd | 12 ++++++++----
15 files changed, 92 insertions(+), 44 deletions(-)
Author: Patrick E. Meyer, Frederic Lafitte, Gianluca Bontempi
Title: Mutual Information Network Inference
Description: This package implements various algorithms for inferring
mutual information networks from data.
Diff between minet versions 1.6.0 dated 2009-05-11 and 2.0.0 dated 2009-08-20
minet-1.6.0/minet/R/aracne.net.R |only minet-1.6.0/minet/R/clr.net.R |only minet-1.6.0/minet/R/disc.R |only minet-1.6.0/minet/R/mr.net.R |only minet-1.6.0/minet/R/norm.R |only minet-1.6.0/minet/inst/doc/courbes.pdf |only minet-1.6.0/minet/inst/doc/graph.pdf |only minet-1.6.0/minet/man/aracne.net.Rd |only minet-1.6.0/minet/man/clr.net.Rd |only minet-1.6.0/minet/man/disc.Rd |only minet-1.6.0/minet/man/mr.net.Rd |only minet-1.6.0/minet/man/norm.Rd |only minet-1.6.0/minet/src/disc.cpp |only minet-1.6.0/minet/src/mim.cpp |only minet-1.6.0/minet/src/symmetrize.cpp |only minet-2.0.0/minet/CHANGES | 7 minet-2.0.0/minet/DESCRIPTION | 14 minet-2.0.0/minet/R/build.mim.R | 66 minet-2.0.0/minet/R/minet.R | 15 minet-2.0.0/minet/R/netinf.R |only minet-2.0.0/minet/R/validate.R | 27 minet-2.0.0/minet/data/syn.net.rda |binary minet-2.0.0/minet/demo/demo.R | 22 minet-2.0.0/minet/inst/doc/minet.Rnw | 161 - minet-2.0.0/minet/inst/doc/minet.pdf | 3774 ++++++++------------------------- minet-2.0.0/minet/man/aracne.Rd |only minet-2.0.0/minet/man/build.mim.Rd | 25 minet-2.0.0/minet/man/clr.Rd |only minet-2.0.0/minet/man/minet.Rd | 12 minet-2.0.0/minet/man/mrnet.Rd |only minet-2.0.0/minet/man/syn.data.Rd | 3 minet-2.0.0/minet/man/syn.net.Rd | 2 minet-2.0.0/minet/man/validate.Rd | 8 minet-2.0.0/minet/man/vis.res.Rd | 6 minet-2.0.0/minet/src/aracne.cpp | 22 minet-2.0.0/minet/src/clr.cpp | 33 minet-2.0.0/minet/src/minet.cpp | 9 minet-2.0.0/minet/src/minet.h | 20 minet-2.0.0/minet/src/mrnet.cpp | 76 minet-2.0.0/minet/src/symetrize.cpp |only minet-2.0.0/minet/src/validate.cpp | 31 41 files changed, 1211 insertions(+), 3122 deletions(-)
Author: Gregory R. Warnes and Gregor Gorjanc. Includes R source code
and/or documentation contributed by Ben Bolker and Thomas
Lumley.
Title: Various R programming tools for data manipulation
Description: Various R programming tools for data manipulation
Diff between gdata versions 2.6.0 dated 2009-08-05 and 2.6.1 dated 2009-08-20
ChangeLog | 33 ++++++++++++++++++++++++++++++++ DESCRIPTION | 8 +++---- NEWS | 8 +++++++ inst/ChangeLog | 33 ++++++++++++++++++++++++++++++++ inst/NEWS | 8 +++++++ inst/doc/mapLevels.pdf |binary inst/doc/unknown.pdf |binary inst/unitTests/report.html |only inst/unitTests/report.txt |only inst/unitTests/runit.bindData.Rout |only inst/unitTests/runit.getDateTimeParts.R | 8 ++----- man/cbindX.Rd | 4 +-- man/getDateTimePart.Rd | 14 ++++++------- man/mapLevels.Rd | 4 +-- man/nPairs.Rd | 2 - man/trim.Rd | 4 +-- man/trimSum.Rd | 4 +-- man/unknown.Rd | 10 ++++----- man/write.fwf.Rd | 24 +++++++++++------------ 19 files changed, 122 insertions(+), 42 deletions(-)
Author: Guido van Steen
Title: dataframes2xls writes data frames to xls files
Description: dataframes2xls writes data frames to xls files. It
supports multiple sheets and basic formatting.
Diff between dataframes2xls versions 0.4.2 dated 2008-07-20 and 0.4.3 dated 2009-08-20
DESCRIPTION | 17 - LICENSE | 2 R/write.xls.R | 24 - inst/python/afm/LICENSE | 2 inst/python/afm/_mathtext_data.py | 62 ++++- inst/python/afm/afm.py | 106 ++++---- inst/python/pyexcelerator/BIFFRecords.py | 292 +++++++++++++++++++++++- inst/python/pyexcelerator/Cell.py | 51 +++- inst/python/pyexcelerator/Column.py | 19 + inst/python/pyexcelerator/CompoundDoc.py | 10 inst/python/pyexcelerator/ExcelFormula.py | 39 ++- inst/python/pyexcelerator/ExcelFormulaLexer.py | 8 inst/python/pyexcelerator/ExcelFormulaParser.py | 2 inst/python/pyexcelerator/Formatting.py | 62 ++++- inst/python/pyexcelerator/Row.py | 44 ++- inst/python/pyexcelerator/Style.py | 10 inst/python/pyexcelerator/Utils.py | 5 inst/python/pyexcelerator/Workbook.py | 57 ++++ inst/python/pyexcelerator/Worksheet.py | 82 ++++++ inst/python/pyexcelerator/excel-formula.g | 2 20 files changed, 748 insertions(+), 148 deletions(-)
More information about dataframes2xls at CRAN
Permanent link
Author: Sanford Weisberg
Diff between alr3 versions 1.1.9 dated 2009-08-19 and 1.1.10 dated 2009-08-20
Title: Methods and data to accompany Applied Linear Regression 3rd
edition
Description: This library is a companion to the textbook S. Weisberg
(2005), "Applied Linear Regression," 3rd edition, Wiley. It
includes all the data sets discussed in the book (except one),
and several few functions that are tailored to the methods
discussed in the book. Ver. 1.0.3 corrects bugs in (1) weights
for POD models; (2) use of 'subset' arguments with boot.case.
Ver. 1.0.4 corrects a few bugs with overparameterized models.
Ver. 1.0.5 changes one default argument. Ver 1.0.6 replaces the
pure.error.anova function so it prints nicer and works with
interactions. Ver 1.0.7 fixes a bug in residual.plots and adds
an additional argument and adds a new function alrweb to access
the website for the book in a browser. Ver 1.0.8 fixed a bug in
delta.method for generalized linear models. Ver 1.0.9 fixes a
bug with Yeo Johnson transformations. Ver 1.1.0 drops the
conf.intervals function in favor of the confint function in
stat, includes several minor bug fixes, and makes the package
fully compatible with version 2.6.0 of R. 1.1.2 corrects a bug
introduced in boot.case. Version 1.1.7 adds a namespace. Ver
1.1.8 fixes more bugs. Ver. 1.1.9 updated the delta.method to
work with a user-supplied estimate of the variance matrix.
1.1.10 removed a conflict with another package.
DESCRIPTION | 9 +++++----
NAMESPACE | 1 -
R/deltaMethod.R | 5 -----
man/deltaMethod.Rd | 2 --
4 files changed, 5 insertions(+), 12 deletions(-)
Author: Charlotte Maia
Title: Random Time Variables
Description: An R package for conveniently representing and
manipulating realisations of random time variables.
Diff between rtv versions 0.2.2 dated 2009-03-23 and 0.3.0 dated 2009-08-20
DESCRIPTION | 11 +++++------ inst/doc/rtv.pdf |binary inst/doc/rtv.rnw | 15 ++++++++------- 3 files changed, 13 insertions(+), 13 deletions(-)
Author: Martin Elff
Title: Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
Diff between memisc versions 0.95-19 dated 2009-06-02 and 0.95-21 dated 2009-08-20
DESCRIPTION | 13 +-- R/AllGenerics.R | 12 ++ R/contrasts.R | 2 inst/NEWS | 6 + inst/doc/anes48.pdf |binary man/contrasts.Rd | 9 +- man/mtable.Rd | 4 src/pspp-portableStream-for-R.c | 167 +++++++++++++++++++++------------------- 8 files changed, 122 insertions(+), 91 deletions(-)
Author: Yue Fan, Thomas Brendan Murphy, R. William G. Watson
Title: GUI tool for analyzing 2D DIGE data
Description: An easy to use Graphical User Interfact for spots
correlation analysis, score plot, classification, feature
selection and power analysis for 2D DIGE experiment data.
Diff between digeR versions 1.1 dated 2009-08-06 and 1.2 dated 2009-08-20
digeR-1.1/digeR/inst/Manual_for_digeR_v1.1.pdf |only digeR-1.1/digeR/inst/digeR.pdf |only digeR-1.2/digeR/DESCRIPTION | 6 +++--- digeR-1.2/digeR/inst/doc |only digeR-1.2/digeR/man/digeR-package.Rd | 3 ++- digeR-1.2/digeR/man/digeR.Rd | 1 - 6 files changed, 5 insertions(+), 5 deletions(-)
Author: Peter Gilbert, Ian McKeague, and Yanqing Sun
Title: Continuous mark-specific relative risks for two groups
Description: Estimation and testing of continuous mark-specific
relative risks in two groups as described in Gilbert, P.,
McKeague, I. and Sun, Y. (2008) The 2-sample problem for
failure rates depending on a continuous mark: an application to
vaccine efficacy. Biostatistics 9, 2, 263-276. This package
implements the methods presented in the paper for testing
mark-specific hazards ratios and for estimation of
mark-specific incidence ratios that are cumulative in time or
cumulative in both time and the continuous mark.
Diff between cmprskContin versions 1.0 dated 2009-06-18 and 1.1 dated 2009-08-20
DESCRIPTION | 11 ++++++----- man/cmprsk.Rd | 2 +- man/cmprskContin-package.Rd | 6 +++--- man/plotCmprsk.Rd | 2 +- man/summaryCmprsk.Rd | 2 +- 5 files changed, 12 insertions(+), 11 deletions(-)
Author: Dimitris Rizopoulos
Diff between JM versions 0.3-0 dated 2009-06-17 and 0.4-0 dated 2009-08-20
Title: Joint Modelling of Longitudinal and Survival Data
Description: Shared parameter models for the joint modelling of
longitudinal and time-to-event data.
JM-0.3-0/JM/R/predict.jointModel.R |only
JM-0.4-0/JM/DESCRIPTION | 8 +++---
JM-0.4-0/JM/NAMESPACE | 6 +++-
JM-0.4-0/JM/R/H.longAFTWB.R |only
JM-0.4-0/JM/R/H.longPC.R |only
JM-0.4-0/JM/R/H.longWB.R |only
JM-0.4-0/JM/R/LogLik.piecewiseGH.R | 2 -
JM-0.4-0/JM/R/LogLik.weibullAFTGH.R | 15 ++++++-----
JM-0.4-0/JM/R/LogLik.weibullGH.R | 15 ++++++-----
JM-0.4-0/JM/R/MI.fixed.times.R | 44 +++++++++++++++++++++++++----------
JM-0.4-0/JM/R/MI.random.times.R | 33 +++++++++++++++++++-------
JM-0.4-0/JM/R/S.b.R |only
JM-0.4-0/JM/R/Score.piecewiseGH.R | 2 -
JM-0.4-0/JM/R/Score.weibullAFTGH.R | 13 +++++-----
JM-0.4-0/JM/R/Score.weibullGH.R | 13 +++++-----
JM-0.4-0/JM/R/cd.R |only
JM-0.4-0/JM/R/fitted.jointModel.R | 15 ++++++++---
JM-0.4-0/JM/R/gr.survPC.R | 10 +++----
JM-0.4-0/JM/R/h.b.R |only
JM-0.4-0/JM/R/log.posterior.b.R |only
JM-0.4-0/JM/R/piecewisePHGH.fit.R | 11 ++++----
JM-0.4-0/JM/R/plot.jointModel.R | 2 -
JM-0.4-0/JM/R/plot.survfitJM.R |only
JM-0.4-0/JM/R/posterior.b.R | 10 +++----
JM-0.4-0/JM/R/print.survfitJM.R |only
JM-0.4-0/JM/R/residuals.jointModel.R | 12 +++++++--
JM-0.4-0/JM/R/survfitJM.R |only
JM-0.4-0/JM/R/weibullAFTGH.fit.R | 25 +++++++++++--------
JM-0.4-0/JM/R/weibullPHGH.fit.R | 28 +++++++++++-----------
JM-0.4-0/JM/data/aids.id.rda |binary
JM-0.4-0/JM/data/aids.rda |binary
JM-0.4-0/JM/data/pbc2.id.rda |binary
JM-0.4-0/JM/data/pbc2.rda |binary
JM-0.4-0/JM/data/prothro.rda |binary
JM-0.4-0/JM/data/prothros.rda |binary
JM-0.4-0/JM/inst/NEWS | 12 +++++++++
JM-0.4-0/JM/man/JM.Rd | 4 +--
JM-0.4-0/JM/man/fitted.Rd | 5 ++-
JM-0.4-0/JM/man/jointModel.Rd | 8 ++++--
JM-0.4-0/JM/man/plot-survfitJM.Rd |only
JM-0.4-0/JM/man/survfitJM.Rd |only
41 files changed, 186 insertions(+), 107 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97-1 dated 2009-08-19 and 0.97-3 dated 2009-08-20
DESCRIPTION | 8 ++-- R/FrF2.R | 23 +++++++---- R/add.center.R | 3 + R/find.gen.R |only R/fold.design.R | 5 ++ R/utilpb.R | 13 ++++-- inst/NEWS | 20 ++++++++++ man/CatalogueAccessors.Rd | 2 - man/FrF2.Rd | 10 ++++- man/pb.Rd | 2 - man/utilitiesPB.Rd | 8 ++-- tests/FrF2test.R | 2 + tests/FrF2test.Rout.save | 71 ++++++++++++++++++++++++++++++++++--- tests/generators.from.designtest.R |only 14 files changed, 136 insertions(+), 31 deletions(-)
Author: David Ardia, Lennart F. Hoogerheide and Herman K. van Dijk
Title: Adaptive Mixture of Student-t distributions
Description: This package provides functions to perform the fitting of
an adaptive mixture of Student-t distributions to a target
density through its kernel function. The mixture approximation
can then be used as the importance density in importance
sampling or as the candidate density in the Metropolis-Hastings
algorithm to obtain quantities of interest for the target
density itself.
Diff between AdMit versions 1-01.02 dated 2009-05-11 and 1-01.03 dated 2009-08-20
AdMit-1-01.02/AdMit/XEmacs-21.4.20.lnk |only AdMit-1-01.02/AdMit/inst/doc/ArticleRnews.txt |only AdMit-1-01.03/AdMit/DESCRIPTION | 8 AdMit-1-01.03/AdMit/NEWS | 5 AdMit-1-01.03/AdMit/R/onload.R | 2 AdMit-1-01.03/AdMit/inst/CITATION | 23 - AdMit-1-01.03/AdMit/inst/doc/AdMit.pdf | 497 +++++++++++------------ AdMit-1-01.03/AdMit/inst/doc/ArticleJSS.txt | 2 AdMit-1-01.03/AdMit/inst/doc/ArticleRJournal.txt |only AdMit-1-01.03/AdMit/inst/doc/Rplots.pdf | 4 AdMit-1-01.03/AdMit/man/AdMit.Rd | 14 AdMit-1-01.03/AdMit/man/AdMitIS.Rd | 16 AdMit-1-01.03/AdMit/man/AdMitMH.Rd | 14 AdMit-1-01.03/AdMit/man/Mit.Rd | 14 14 files changed, 304 insertions(+), 295 deletions(-)
Author: Alberto Viglione
Title: Non-supervised Regional Frequency Analysis
Description: A collection of statistical tools for objective
(non-supervised) applications of the Regional Frequency
Analysis methods in hydrology. The package refers to the
index-value method and, more precisely, helps the hydrologist
to: (1) regionalize the index-value; (2) form homogeneous
regions with similar growth curves; (3) fit distribution
functions to the empirical regional growth curves.
Diff between nsRFA versions 0.6-8 dated 2009-04-14 and 0.6-9 dated 2009-08-19
DESCRIPTION | 8 +++---- R/BayesianMCMC.R | 40 ++++++++++++++++++++++++++++--------- inst/doc/Fig11GriffisStedinger.Rnw |only inst/doc/Fig11GriffisStedinger.pdf |only inst/doc/Fig1ElamirSeheult.pdf |binary inst/doc/MSClaio2008.pdf |binary inst/doc/nsRFA_ex01.pdf |binary inst/doc/nsRFA_ex02.pdf |binary man/nsRFA-package.Rd | 6 +++-- 9 files changed, 39 insertions(+), 15 deletions(-)
Author: Roger Bivand
Diff between spdep versions 0.4-34 dated 2009-01-21 and 0.4-36 dated 2009-08-19
Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by
distance and tesselations, for summarising these objects, and
for permitting their use in spatial data analysis, including
regional aggregation by minimum spanning tree; a collection of
tests for spatial autocorrelation, including global Moran's I,
APLE, Geary's C, Hubert/Mantel general cross product statistic,
Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G
and multicoloured join count statistics, local Moran's I and
Getis/Ord G, saddlepoint approximations and exact tests for
global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
weighted and unweighted SAR and CAR spatial regression models,
semi-parametric and Moran eigenvector spatial filtering, GM SAR
error models, and generalized spatial two stage least squares
models.
ChangeLog | 72 +
DESCRIPTION | 52 -
NAMESPACE | 2
R/aple.R | 11
R/aple.mc.R | 5
R/apleplot.R | 11
R/geary.R | 12
R/moran.exact.R | 6
R/mtmoran.R | 6
R/sarlm.R | 2
R/weights-utils.R | 24
inst/ChangeLog | 72 +
inst/doc/CO69.Rnw |only
inst/doc/CO69.pdf |only
inst/doc/sids.Rnw | 4
inst/doc/sids.pdf | 1456 +++++++++++++++++-----------------
inst/etc/misc/geary_eire.txt |only
inst/etc/misc/raw_grass_borders.RData |only
inst/etc/misc/unstand_sn.txt |only
man/aple.Rd | 3
man/aple.mc.Rd | 3
man/aple.plot.Rd | 5
man/geary.test.Rd | 10
man/lm.morantest.sad.Rd | 3
man/localmoran.sad.Rd | 3
man/moran.test.Rd | 7
man/testnb.Rd | 6
27 files changed, 994 insertions(+), 781 deletions(-)
Author: Marta Blangiardo, Alberto Cassese
Title: Synthesizing List of Differentially Expressed Features
Description: The package performs two tests to evaluate if the
experiments are associated and returns a list of interesting
feautres common to all the experiments.
Diff between sdef versions 1.0 dated 2009-08-14 and 1.1 dated 2009-08-19
DESCRIPTION | 8 ++++---- R/ratio.R | 2 +- man/ratio.Rd | 4 ++-- man/sdef-package.Rd | 4 ++-- 4 files changed, 9 insertions(+), 9 deletions(-)
Author: Timothy H. Keitt
Diff between rgdal versions 0.6-12 dated 2009-08-14 and 0.6-14 dated 2009-08-19
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
ChangeLog | 20 +++++++++++++--
DESCRIPTION | 8 +++---
R/gdal.R | 21 ++++++++++++---
R/sp_gdal.R | 31 +++++++++++++++++------
inst/ChangeLog | 20 +++++++++++++--
man/GDALDataset-class.Rd | 3 +-
man/GDALTransientDataset-class.Rd | 5 ++-
man/readGDAL.Rd | 32 +++++++++++++++++++++---
man/readOGR.Rd | 50 ++++++++++++++++++++++++++------------
9 files changed, 147 insertions(+), 43 deletions(-)
Author: Jim Lemon,Ben Bolker,Sander Oom, Eduardo Klein,Barry
Rowlingson, Hadley Wickham,Anupam Tyagi, Olivier
Eterradossi,Gabor Grothendieck, Michael Toews,John Kane,Mike
Cheetham, Rolf Turner,Carl Witthoft,Julian Stander, Thomas
Petzoldt,Remko Duursma,Elisa Biancotto, Ofir Levy
Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling
functions.
Diff between plotrix versions 2.6-4 dated 2009-07-19 and 2.7 dated 2009-08-19
DESCRIPTION | 8 ++++---- NEWS | 4 ++++ R/addtable2plot.R | 9 +++------ R/boxed.labels.R | 5 +++-- R/gantt.R | 2 +- R/getFigCtr.R |only R/hierobarp.R | 6 +----- R/pyramid.plot.R | 3 +-- R/radial.plot.R | 34 ++++++++++++++++++---------------- R/staircase.plot.R | 2 +- man/boxed.labels.Rd | 13 ++++++++----- man/draw.arc.Rd | 21 ++++++++++++++++----- man/getFigCtr.Rd |only man/hierobarp.Rd | 3 ++- man/hierobrk.Rd | 1 + man/radial.plot.Rd | 14 +++++++++----- man/staircase.plot.Rd | 5 ++++- 17 files changed, 76 insertions(+), 54 deletions(-)
Author: Jonathan P. Weeks
Diff between plink versions 1.1-6 dated 2009-08-07 and 1.2-0 dated 2009-08-19
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a common
item design. The unidimensional methods include the Mean/Mean,
Mean/Sigma, Haebara, and Stocking-Lord methods for dichotomous
(1PL, 2PL and 3PL) and/or polytomous (graded response, partial
credit/generalized partial credit, nominal, and multiple-choice
model) items. The multidimensional methods include the
Reckase-Martineau method and extensions of the Haebara and
Stocking-Lord method using a single dilation parameter,
multiple dilation parameters, or the Oshima, Davey, & Lee
approach for multidimensional extensions of all the
unidimensional dichotomous and polytomous item response models.
The package also includes functions for importing item and/or
ability parameters from common IRT software, conducting IRT
true score and observed score equating, and ploting item
response curves/surfaces, vector plots, and comparison plots
for examining parameter drift.
DESCRIPTION | 17 +++++++++--------
NAMESPACE | 3 ++-
R/equate.R |only
R/plink.R | 10 +++++++---
inst/NEWS | 9 +++++++++
man/equate-methods.Rd |only
man/irt.pars-class.Rd | 4 ++--
man/plink-methods.Rd | 5 -----
8 files changed, 29 insertions(+), 19 deletions(-)
Author: Daniel B. Wright
Title: Wright & London's Modern Regression Techniques
Description: Datasets and functions from Wright and London's Modern
Regression Techniques
Diff between mrt versions 0.2 dated 2009-06-16 and 0.3 dated 2009-08-19
DESCRIPTION | 10 +++++----- R/ngfinder.R |only man/mrt-package.Rd | 8 ++++---- man/ngfinder.Rd |only 4 files changed, 9 insertions(+), 9 deletions(-)
Author: Robert B. Gramacy
Diff between monomvn versions 1.7-2 dated 2009-06-02 and 1.7-3 dated 2009-08-19
Title: Estimation for multivariate normal and Student-t data with
monotone missingness
Description: Estimation of multivariate normal and student-t data of
arbitrary dimension where the pattern of missing data is
monotone. Through the use of parsimonious/shrinkage regressions
(plsr, pcr, lasso, ridge, etc.), where standard regressions
fail, the package can handle a nearly arbitrary amount of
missing data. The current version supports maximum likelihood
inference and a full Bayesian approach employing scale-mixtures
for the lasso (double-exponential) prior and Student-t errors.
Monotone data augmentation extends this Bayesian approach to
arbitrary missingness patterns. A fully functional standalone
interface to the Bayesian lasso (from Park & Casella) and ridge
regression with model selection via Reversible Jump, and
student-t errors (from Geweke) is also provided
monomvn-1.7-2/monomvn/.Rbuildindex.20799 |only
monomvn-1.7-3/monomvn/ChangeLog | 9 +++
monomvn-1.7-3/monomvn/DESCRIPTION | 8 +--
monomvn-1.7-3/monomvn/R/blasso.R | 6 +-
monomvn-1.7-3/monomvn/R/bmonomvn.R | 7 +--
monomvn-1.7-3/monomvn/man/bmonomvn.Rd | 2
monomvn-1.7-3/monomvn/man/default.QP.Rd | 16 ++++--
monomvn-1.7-3/monomvn/src/blasso.cc | 30 ++++++-------
monomvn-1.7-3/monomvn/src/bmonomvn.cc | 5 +-
monomvn-1.7-3/monomvn/src/hshoe.c | 71 +++++++++++++++++++++++++++++--
monomvn-1.7-3/monomvn/src/hshoe.h | 9 ++-
11 files changed, 123 insertions(+), 40 deletions(-)
Author: Rob J Hyndman
Diff between hdrcde versions 2.09 dated 2008-11-21 and 2.10 dated 2009-08-19
Title: Highest density regions and conditional density estimation
Description: Computation of highest density regions in one and two
dimensions, kernel estimation of univariate density functions
conditional on one covariate, and multimodal regression.
DESCRIPTION | 36 +++++++++++++++++++-----------------
R/attach.R | 2 +-
R/hdr.boxplot.2d.R | 2 +-
R/hdr.boxplot.R | 2 +-
4 files changed, 22 insertions(+), 20 deletions(-)
Author: Søren Højsgaard
Diff between doBy versions 4.0.0 dated 2009-07-31 and 4.0.1 dated 2009-08-19
Title: Groupwise computations of summary statistics, general linear
contrasts and other utilities
Description: Facilities for groupwise computations of summary
statistics and other facilities for working with grouped data.
ChangeLog | 8
DESCRIPTION | 6
R/summaryBy.R | 621 ++++++++++++++++++++++++++++++++++++++----------------
inst/doc/doBy.pdf | 527 +++++++++++++++++++++++----------------------
4 files changed, 728 insertions(+), 434 deletions(-)
Author: Sanford Weisberg
Diff between alr3 versions 1.1.8 dated 2009-08-04 and 1.1.9 dated 2009-08-19
Title: Methods and data to accompany Applied Linear Regression 3rd
edition
Description: This library is a companion to the textbook S. Weisberg
(2005), "Applied Linear Regression," 3rd edition, Wiley. It
includes all the data sets discussed in the book (except one),
and several few functions that are tailored to the methods
discussed in the book. Ver. 1.0.3 corrects bugs in (1) weights
for POD models; (2) use of 'subset' arguments with boot.case.
Ver. 1.0.4 corrects a few bugs with overparameterized models.
Ver. 1.0.5 changes one default argument. Ver 1.0.6 replaces the
pure.error.anova function so it prints nicer and works with
interactions. Ver 1.0.7 fixes a bug in residual.plots and adds
an additional argument and adds a new function alrweb to access
the website for the book in a browser. Ver 1.0.8 fixed a bug in
delta.method for generalized linear models. Ver 1.0.9 fixes a
bug with Yeo Johnson transformations. Ver 1.1.0 drops the
conf.intervals function in favor of the confint function in
stat, includes several minor bug fixes, and makes the package
fully compatible with version 2.6.0 of R. 1.1.2 corrects a bug
introduced in boot.case. Version 1.1.7 adds a namespace. Ver
1.1.8 fixes more bugs. Ver. 1.1.9 updated the delta.method to
work with a user-supplied estimate of the variance matrix.
alr3-1.1.8/alr3/man/delta.method.Rd |only
alr3-1.1.9/alr3/DESCRIPTION | 11 +++---
alr3-1.1.9/alr3/NAMESPACE | 9 ++++-
alr3-1.1.9/alr3/R/alr3.R | 61 ------------------------------------
alr3-1.1.9/alr3/R/deltaMethod.R |only
alr3-1.1.9/alr3/man/deltaMethod.Rd |only
6 files changed, 15 insertions(+), 66 deletions(-)
Author: Jianqing Fan, Yang Feng, Richard Samworth, Yichao Wu
Title: Sure Independence Screening
Description: (Iterative) Sure Independence Screening for Generalized
Linear Models and Cox's Proportional Hazard's Models
Diff between SIS versions 0.1 dated 2009-08-14 and 0.2 dated 2009-08-19
DESCRIPTION | 12 ++++++------ R/SIS.r | 12 ++++++------ R/wtLassoScadCOX.r | 6 +++--- R/wtLassoScadGLM.r | 8 +++++--- 4 files changed, 20 insertions(+), 18 deletions(-)
Author: Reinhold Hatzinger, Patrick Mair, Norman Verhelst
Title: Rasch Sampler
Description: Sampling binary matrices with fixed margins
Diff between RaschSampler versions 0.8-1 dated 2008-06-26 and 0.8-2 dated 2009-08-19
RaschSampler-0.8-1/RaschSampler/R/phi.R |only RaschSampler-0.8-1/RaschSampler/man/phi.Rd |only RaschSampler-0.8-2/RaschSampler/DESCRIPTION | 24 +++++---- RaschSampler-0.8-2/RaschSampler/NAMESPACE | 3 - RaschSampler-0.8-2/RaschSampler/R/phi.range.R |only RaschSampler-0.8-2/RaschSampler/R/rsextrmat.R |only RaschSampler-0.8-2/RaschSampler/R/rsextrobj.R | 7 ++ RaschSampler-0.8-2/RaschSampler/R/rstats.R | 11 ++-- RaschSampler-0.8-2/RaschSampler/R/rsunpack.R | 4 - RaschSampler-0.8-2/RaschSampler/man/RSctr.Rd | 2 RaschSampler-0.8-2/RaschSampler/man/RSmpl.Rd | 2 RaschSampler-0.8-2/RaschSampler/man/RaschSampler.package.Rd | 6 +- RaschSampler-0.8-2/RaschSampler/man/phi.range.Rd |only RaschSampler-0.8-2/RaschSampler/man/rsctrl.Rd | 4 - RaschSampler-0.8-2/RaschSampler/man/rsextrmat.Rd |only RaschSampler-0.8-2/RaschSampler/man/rsextrobj.Rd | 10 ++-- RaschSampler-0.8-2/RaschSampler/man/rstats.Rd | 30 ++++++++---- RaschSampler-0.8-2/RaschSampler/src/RaschSampler.f90 | 19 +------ 18 files changed, 66 insertions(+), 56 deletions(-)
Author: Various
Title: Siena - Simulation Investigation for Empirical Network Analysis
Description: Fits models to longitudinal networks
Diff between RSiena versions 1.0.0 dated 2009-06-27 and 1.0.5 dated 2009-08-19
DESCRIPTION | 13 NAMESPACE | 12 R/effects.r | 17 R/effectsInfo.R | 28 R/getTargets.r |only R/interrupt.r | 104 R/phase1.r | 264 R/phase2.r | 59 R/phase3.r | 175 R/print01Report.r | 45 R/printDataReport.r | 7 R/printInitialDescription.r | 35 R/robmon.r | 71 R/siena01.r | 146 R/siena07.r | 46 R/sienaDataCreate.r | 33 R/sienaDataCreateFromSession.r | 211 R/sienautils.r | 11 R/simstatsc.r | 100 R/zzz.R | 6 configure.win |only inst/doc/s_man400.pdf | 8859 ++++++------ man/RSiena-package.Rd | 4 man/installGui.Rd |only man/model.create.Rd | 12 man/s501.Rd | 2 man/s502.Rd | 2 man/s503.Rd | 2 man/s50a.Rd | 2 man/siena07.Rd | 15 man/sienaDataCreateFromSession.Rd | 28 man/sienaModelOptions.Rd | 24 man/simstats0c.Rd | 16 src/data/ChangingDyadicCovariate.cpp | 89 src/data/ChangingDyadicCovariate.h | 51 src/data/CommonNeighborIterator.cpp | 2 src/data/CommonNeighborIterator.h | 2 src/data/ConstantDyadicCovariate.cpp | 69 src/data/ConstantDyadicCovariate.h | 53 src/data/DataUtils.h | 8 src/data/DyadicCovariateValueIterator.cpp |only src/data/DyadicCovariateValueIterator.h |only src/data/IncidentTieIterator.cpp | 29 src/data/IncidentTieIterator.h | 21 src/data/Network.cpp | 148 src/data/Network.h | 36 src/data/OneModeNetwork.cpp | 31 src/data/OneModeNetwork.h | 27 src/data/OneModeNetworkLongitudinalData.cpp | 4 src/model/EpochSimulation.cpp | 160 src/model/EpochSimulation.h | 22 src/model/SimulationActorSet.cpp |only src/model/SimulationActorSet.h |only src/model/effects/AllEffects.h | 9 src/model/effects/CovariateAlterEffect.cpp | 26 src/model/effects/CovariateAlterEffect.h | 15 src/model/effects/CovariateEgoAlterEffect.cpp | 98 src/model/effects/CovariateEgoAlterEffect.h | 24 src/model/effects/CovariateIndirectTiesEffect.cpp |only src/model/effects/CovariateIndirectTiesEffect.h |only src/model/effects/CovariateSimilarityEffect.cpp | 96 src/model/effects/CovariateSimilarityEffect.h | 27 src/model/effects/DenseTriadsEffect.cpp |only src/model/effects/DenseTriadsEffect.h |only src/model/effects/DensityEffect.cpp | 37 src/model/effects/DistanceTwoEffect.cpp |only src/model/effects/DistanceTwoEffect.h |only src/model/effects/DyadicCovariateDependentNetworkEffect.cpp | 40 src/model/effects/DyadicCovariateDependentNetworkEffect.h | 6 src/model/effects/DyadicCovariateReciprocityEffect.cpp |only src/model/effects/DyadicCovariateReciprocityEffect.h |only src/model/effects/EffectFactory.cpp | 68 src/model/effects/FourCyclesEffect.cpp |only src/model/effects/FourCyclesEffect.h |only src/model/effects/HigherCovariateEffect.cpp |only src/model/effects/HigherCovariateEffect.h |only src/model/effects/InverseOutdegreeEffect.cpp |only src/model/effects/InverseOutdegreeEffect.h |only src/model/effects/InverseSquaredOutdegreeEffect.cpp |only src/model/effects/InverseSquaredOutdegreeEffect.h |only src/model/effects/NetworkEffect.cpp | 2 src/model/effects/NetworkEffect.h | 11 src/model/effects/SameCovariateEffect.cpp | 111 src/model/effects/SameCovariateEffect.h | 25 src/model/effects/StructuralRateEffect.cpp |only src/model/effects/StructuralRateEffect.h |only src/model/effects/WWXClosureEffect.cpp |only src/model/effects/WWXClosureEffect.h |only src/model/effects/WXXClosureEffect.cpp |only src/model/effects/WXXClosureEffect.h |only src/model/effects/XWXClosureEffect.cpp |only src/model/effects/XWXClosureEffect.h |only src/model/tables/TwoPathTable.cpp | 88 src/model/tables/TwoPathTable.h | 22 src/model/variables/BehaviorVariable.cpp | 27 src/model/variables/BehaviorVariable.h | 11 src/model/variables/DependentVariable.cpp | 266 src/model/variables/DependentVariable.h | 61 src/model/variables/EffectValueTable.h | 18 src/model/variables/NetworkVariable.cpp | 92 src/model/variables/NetworkVariable.h | 87 src/siena07.cpp | 54 src/utils/Utils.cpp | 24 src/utils/Utils.h | 2 104 files changed, 6954 insertions(+), 5494 deletions(-)
Author: Duncan Temple Lang
Title: General network (HTTP/FTP/...) client interface for R
Description: The package allows one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Diff between RCurl versions 0.98-1 dated 2009-06-07 and 1.0-0 dated 2009-08-19
RCurl-0.98-1/RCurl/CodeGeneration/enum.c.tu |only RCurl-0.98-1/RCurl/CodeGeneration/tmp |only RCurl-0.98-1/RCurl/R/aclassesEnums.R |only RCurl-0.98-1/RCurl/R/xbits.R |only RCurl-0.98-1/RCurl/inst/enums/enums.R |only RCurl-0.98-1/RCurl/inst/enums/foo.c |only RCurl-0.98-1/RCurl/itis.R |only RCurl-1.0-0/RCurl/Changes.html | 45 +++++++++++++++++++++++- RCurl-1.0-0/RCurl/CodeGeneration/enum.c.001t.tu |only RCurl-1.0-0/RCurl/DESCRIPTION | 6 +-- RCurl-1.0-0/RCurl/R/curl.S | 18 +++++---- RCurl-1.0-0/RCurl/R/dynamic.R | 37 ++++++++++++++----- RCurl-1.0-0/RCurl/R/form.S | 13 +++--- RCurl-1.0-0/RCurl/R/getURLContent.R | 18 ++++++--- RCurl-1.0-0/RCurl/Todo.html | 6 ++- RCurl-1.0-0/RCurl/ii |only RCurl-1.0-0/RCurl/inst/doc/philosophy.html | 36 +++++++++---------- RCurl-1.0-0/RCurl/man/curlSetOpt.Rd | 19 ++++++++-- RCurl-1.0-0/RCurl/man/dynCurlReader.Rd | 7 +++ RCurl-1.0-0/RCurl/man/enums.Rd | 3 + RCurl-1.0-0/RCurl/man/getBitIndicators.Rd | 2 - RCurl-1.0-0/RCurl/man/getURL.Rd | 27 +++++++++++++- RCurl-1.0-0/RCurl/man/postForm.Rd | 18 ++++++++- RCurl-1.0-0/RCurl/oo |only RCurl-1.0-0/RCurl/src/Makevars | 8 ++-- 25 files changed, 198 insertions(+), 65 deletions(-)
Author: Jon T. Schnute
Diff between PBSmodelling versions 2.20 dated 2009-08-08 and 2.21 dated 2009-08-19
Title: GUI Tools Made Easy: Interact with Models, Explore Data, Give
Dynamic Presentations
Description: PBS Modelling provides software to facilitate the design,
testing, and operation of computer models. It focuses
particularly on tools that make it easy to construct and edit a
customized graphical user interface (GUI). Although it depends
heavily on the R interface to the Tcl/Tk package, a user does
not need to know Tcl/Tk. The package contains examples that
illustrate models built with other R packages, including
PBSmapping, deSolve, PBSddesolve, and BRugs. It also serves as
a convenient prototype for building new R packages, along with
instructions and batch files to facilitate that process. The R
directory '.../library/PBSmodelling/doc' includes a complete
user guide PBSmodelling-UG.pdf. To use this package
effectively, please consult the guide.
PBSmodelling-2.20/PBSmodelling/inst/examples/CCADat.txt |only
PBSmodelling-2.20/PBSmodelling/inst/examples/SwissTalk.txt |only
PBSmodelling-2.20/PBSmodelling/inst/examples/YPR.r |only
PBSmodelling-2.21/PBSmodelling/DESCRIPTION | 11 +++---
PBSmodelling-2.21/PBSmodelling/R/supportFuns.r | 6 ++-
PBSmodelling-2.21/PBSmodelling/R/zzz.r | 18 ++++++++--
PBSmodelling-2.21/PBSmodelling/inst/doc/ChangeLog.txt | 6 ++-
PBSmodelling-2.21/PBSmodelling/inst/doc/PBSmodellingIntro.pdf |binary
PBSmodelling-2.21/PBSmodelling/inst/examples/CCAdat.txt |only
PBSmodelling-2.21/PBSmodelling/inst/examples/SGM.r | 4 +-
PBSmodelling-2.21/PBSmodelling/inst/examples/runExamplesWin.txt | 2 -
PBSmodelling-2.21/PBSmodelling/inst/examples/sudokuSolver.r | 8 ++--
PBSmodelling-2.21/PBSmodelling/inst/examples/swissTalk.txt |only
PBSmodelling-2.21/PBSmodelling/inst/examples/ypr.r |only
PBSmodelling-2.21/PBSmodelling/inst/examples/yprWin.txt | 2 -
15 files changed, 40 insertions(+), 17 deletions(-)
Author: Kenneth Knoblauch and Laurence T. Maloney, based in part on C
code written by Laurence T. Maloney and J. N. Yang
Title: Maximum Likelihood Difference Scaling
Description: Difference scaling is a method for scaling perceived
supra-threshold differences. The package contains functions
that allow the user to design and run a difference scaling
experiment, to fit the resulting data by maximum likelihood and
test the internal validity of the estimated scale.
Diff between MLDS versions 0.1-8 dated 2009-05-25 and 0.2-0 dated 2009-08-19
MLDS-0.1-8/MLDS/R/AIC.mlds.R |only MLDS-0.1-8/MLDS/man/AIC.mlds.Rd |only MLDS-0.2-0/MLDS/DESCRIPTION | 8 +-- MLDS-0.2-0/MLDS/NAMESPACE | 4 + MLDS-0.2-0/MLDS/R/coef.mlds.R |only MLDS-0.2-0/MLDS/R/vcov.mlds.R |only MLDS-0.2-0/MLDS/inst/NEWS | 12 +++++ MLDS-0.2-0/MLDS/man/AutumnLab.Rd | 71 +++++++++++++++---------------- MLDS-0.2-0/MLDS/man/binom.diagnostics.Rd | 6 ++ MLDS-0.2-0/MLDS/man/boot.mlds.Rd | 6 ++ MLDS-0.2-0/MLDS/man/lik6pt.Rd | 6 ++ MLDS-0.2-0/MLDS/man/mlds.Rd | 4 - MLDS-0.2-0/MLDS/man/simu.6pt.Rd | 6 ++ 13 files changed, 76 insertions(+), 47 deletions(-)
Author: Richard M. Heiberger
Title: Statistical Analysis and Data Display: Heiberger and Holland
Description: Support software for Statistical Analysis and Data Display
(Springer, ISBN 0-387-40270-5). This contemporary presentation
of statistical methods features extensive use of graphical
displays for exploring data and for displaying the analysis.
The authors demonstrate how to analyze data---showing code,
graphics, and accompanying computer listings---for all the
methods they cover. They emphasize how to construct and
interpret graphs, discuss principles of graphical design, and
show how accompanying traditional tabular results are used to
confirm the visual impressions derived directly from the
graphs. Many of the graphical formats are novel and appear here
for the first time in print. All chapters have exercises.
Diff between HH versions 2.1-29 dated 2009-05-28 and 2.1-30 dated 2009-08-19
DESCRIPTION | 8 ++++---- R/position.R | 6 ++++-- 2 files changed, 8 insertions(+), 6 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.97 dated 2009-08-13 and 0.97-1 dated 2009-08-19
DESCRIPTION | 8 ++++---- R/add.center.R | 2 +- R/fold.design.R | 2 +- inst/NEWS | 4 ++++ 4 files changed, 10 insertions(+), 6 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.6-1 dated 2009-08-13 and 0.7 dated 2009-08-19
DESCRIPTION | 10 ++-- NAMESPACE | 5 +- R/plot.design.R |only R/qua.design.R | 1 R/utilities.R | 2 inst/NEWS | 12 +++++ man/class-design-methods.Rd |only man/class-design.Rd | 93 +++++++++++-------------------------------- man/oa.design.Rd | 2 tests/test_cross.Rout.save | 9 ++++ tests/test_reshape.Rout.save | 9 ++++ 11 files changed, 66 insertions(+), 77 deletions(-)
Author: Wouter Buytaert
Title: Implementation of the hydrological model TOPMODEL in R
Description: Set of hydrological functions including an R
implementation of the hydrological model TOPMODEL, which is
based on the 1995 FORTRAN version by Keith Beven. From version
0.7.0, the package is put into maintenance mode. New functions
for hydrological analysis are now developed as part of the
RHydro package. RHydro can be found on R-forge and is built on
a set of dedicated S4 classes.
Diff between topmodel versions 0.6.2 dated 2009-05-17 and 0.7.0 dated 2009-08-16
DESCRIPTION | 22 +++++++++++++--------- NAMESPACE | 13 +++++++++---- R/flowlength.R |only R/outlet.R |only R/river.R |only R/sinkfill.R |only R/streamorder.R |only R/subcatch.R |only R/topidx.R | 11 +++++------ doc |only man/NSeff.Rd | 2 +- man/flowlength.Rd |only man/huagrahuma.Rd | 8 ++++---- man/huagrahuma.dem.Rd | 5 +++-- man/infiltration.Rd | 2 +- man/outlet.Rd |only man/river.Rd |only man/sinkfill.Rd |only man/subcatch.Rd |only man/topidx.Rd | 6 +++--- man/topmodel.Rd | 13 ++++++------- src/core_topmodel.c | 21 ++++++++++++--------- src/flowlength.c |only src/param_init.c | 17 +++++++++++------ src/river.c |only src/sinkfill.c |only src/streamorder.c |only src/subcatch.c |only src/topmodel.h | 1 - 29 files changed, 68 insertions(+), 53 deletions(-)
Author: Roger Bivand
Title: Interface between GRASS 6 geographical information system and R
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the
GRASS environment, or running free-standing R in a temporary
GRASS location; the package provides facilities for using all
GRASS commands from the R command line.
Diff between spgrass6 versions 0.6-6 dated 2009-05-27 and 0.6-7 dated 2009-08-16
ChangeLog | 13 +++++++++++-- DESCRIPTION | 12 +++++++----- R/bin_link.R | 20 ++++++++++++++++++-- R/vect_link.R | 12 ++++++++++-- inst/ChangeLog | 13 +++++++++++-- 5 files changed, 57 insertions(+), 13 deletions(-)
Author: Petr Savicky
Diff between rngwell19937 versions 0.5-2 dated 2009-04-16 and 0.5-3 dated 2009-08-16
Title: WELL19937a random number generator implemented with 53 bit
output
Description: A stand-alone package for the random number generator
WELL19937a by F. Panneton, P. L'Ecuyer and M. Matsumoto. The
initialization algorithm allows to seed the generator with a
vector of integers of an arbitrary length and uses MRG32k5a by
P. L'Ecuyer to achieve good quality of the initialization. The
output function may be set to provide numbers from the interval
(0,1) with 53 (the default) or 32 random bits. WELL19937a is of
similar type as Mersenne Twister and has the same period.
WELL19937a is slightly slower than Mersenne Twister, but has
better equidistribution and "bit-mixing" properties and faster
recovery from states with prevailing zeros than Mersenne
Twister. All WELL generators with orders 512, 1024, 19937 and
44497 can be found in randtoolbox package.
CHANGELOG | 5 ++++-
DESCRIPTION | 29 +++++++++++++++++------------
R/init.R | 4 ++--
man/set.vector.seed.Rd | 9 +++++++--
src/interface.c | 22 +++++++++++-----------
5 files changed, 41 insertions(+), 28 deletions(-)
Author: Jose Pinheiro
Diff between nlme versions 3.1-92 dated 2009-05-24 and 3.1-93 dated 2009-08-16
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear
mixed-effects models.
ChangeLog | 17 ++++++++++++++++-
DESCRIPTION | 8 ++++----
R/corStruct.R | 2 +-
R/gls.R | 7 ++++---
R/gnls.R | 2 +-
R/lmList.R | 11 +++++------
inst/po/de/LC_MESSAGES/R-nlme.mo |binary
inst/po/en@quot/LC_MESSAGES/R-nlme.mo |binary
inst/po/fr/LC_MESSAGES/R-nlme.mo |binary
po/R-de.po |only
po/R-en@quot.po | 11 ++++-------
po/R-fr.po | 9 ++-------
po/R-nlme.pot | 9 +++------
tests/anova.gls.R | 6 ++++++
14 files changed, 46 insertions(+), 36 deletions(-)
Author: Patrick E. Meyer
Title: Information-Theoretic Measures
Description: This package implements various measures of information
theory based on several entropy estimators.
Diff between infotheo versions 1.0.2 dated 2009-06-28 and 1.1.0 dated 2009-08-16
CHANGES | 5 +- DESCRIPTION | 11 ++--- R/entropy.R | 101 +++++++++++++++++++++++------------------------- man/condentropy.Rd | 8 +-- man/condinformation.Rd | 8 +-- man/entropy.Rd | 8 +-- man/interinformation.Rd | 8 +-- man/multiinformation.Rd | 4 - man/mutinformation.Rd | 8 +-- src/discretize.cpp | 4 - 10 files changed, 83 insertions(+), 82 deletions(-)
Author: John Verzani
Title: Toolkit implementation of gWidgets API for use with web pages
Description: Port of gWidgets API to www using RApache
(http://biostat.mc.vanderbilt.edu/rapache/index.html) to link R
with a web page and Ext JavaScript libararies to create and
manipulate widgets. Needs Ext 3.0 or greater. (www.extjs.com)
Diff between gWidgetsWWW versions 0.0-8 dated 2009-08-08 and 0.0-9 dated 2009-08-16
DESCRIPTION | 8 NEWS | 13 R/aaa.R | 49 +- R/dialogs.R | 8 R/gdf.R | 2 R/gedit.R | 2 R/ggooglemaps.R | 4 R/gradio.R | 12 R/gslider.R | 2 R/gtext.R | 2 R/gwindow.R | 21 - inst/Examples/ex-windows.R | 4 inst/doc/gWidgetsWWW.Rnw | 36 + inst/doc/gWidgetsWWW.pdf | 739 ++++++++++++++++++++--------------------- inst/scripts/gWidgetsWWWAJAX.R | 17 inst/scripts/gWidgetsWWWrun.R | 2 man/gWidgetsWWW-package.Rd | 13 17 files changed, 488 insertions(+), 446 deletions(-)
Author: Timothy H. Keitt
Diff between rgdal versions 0.6-10 dated 2009-07-18 and 0.6-12 dated 2009-08-14
Title: Bindings for the Geospatial Data Abstraction Library
Description: Provides bindings to Frank Warmerdam's Geospatial Data
Abstraction Library (GDAL) (>= 1.3.1) and access to
projection/transformation operations from the PROJ.4 library.
The GDAL and PROJ.4 libraries are external to the package, and,
when installing the package from source, must be correctly
installed first. Both GDAL raster and OGR vector map data can
be imported into R, and GDAL raster data and OGR vector data
exported. Use is made of classes defined in the sp package.
ChangeLog | 32 ++++++++++++++++
DESCRIPTION | 8 ++--
R/gdal.R | 20 ++++++----
R/sgdf_gdal.R | 4 +-
R/sp_gdal.R | 6 +--
inst/ChangeLog | 32 ++++++++++++++++
man/CRS-class.Rd | 5 +-
man/GDALDataset-class.Rd | 2 -
man/GDALReadOnlyDataset-class.Rd | 3 +
man/SpatialGDAL-class.Rd | 16 ++++++++
man/readGDAL.Rd | 5 +-
man/spTransform-methods.Rd | 23 +++++------
man/writeOGR.Rd | 5 ++
src/gdal-bindings.cpp | 75 +++++++++++++++++++++++++++++++++++++--
14 files changed, 197 insertions(+), 39 deletions(-)
Author: Brian J. Smith
Diff between ramps versions 0.6-7 dated 2008-11-26 and 0.6-8 dated 2009-08-14
Title: Bayesian Geostatistical Modeling with RAMPS
Description: Bayesian geostatistical modeling of Gaussian processes
using a reparameterized and marginalized posterior sampling
(RAMPS) algorithm designed to lower autocorrelation in MCMC
samples. Package performance is tuned for large spatial
datasets.
DESCRIPTION | 23 ++--
R/control.R | 261 ++++++++++++++++++++++++++++-----------------------
R/georamps.R | 47 +++++----
R/mpdensity.R | 8 -
R/simplex.R | 4
man/georamps.Rd | 8 -
man/param.Rd | 8 -
man/ramps.control.Rd | 4
8 files changed, 210 insertions(+), 153 deletions(-)
Author: M.P. Fay
Title: Exact Conditional Tests and Confidence Intervals for 2x2 tables
Description: Calculates Fisher's exact and Blaker's exact tests with
appropriate matching confidence intervals.
Diff between exact2x2 versions 0.9-1 dated 2009-07-22 and 0.9-3.1 dated 2009-08-14
ChangeLog |only DESCRIPTION | 8 R/blaker.exact.R | 2 R/exact2x2.R | 22 R/exact2x2CI.R | 51 R/exact2x2Pvals.R | 6 R/fisher.exact.R | 2 inst/doc/exact2x2.Rnw | 2 inst/doc/exact2x2.pdf |binary inst/doc/exact2x2.tex | 2 inst/doc/fay2009MatchingCI.pdf | 4799 ++++++++++++++++++++++++----------------- man/exact2x2-internal.Rd | 9 man/exact2x2.Rd | 5 man/exact2x2Plot.Rd | 2 14 files changed, 2907 insertions(+), 2003 deletions(-)
Author: David A. James
Title: SQLite interface for R
Description: Database Interface R driver for SQLite. This package
embeds the SQLite database engine in R and provides an
interface compliant with the DBI package. The source for the
SQLite engine (version 3.6.4) is included.
Diff between RSQLite versions 0.7-1 dated 2008-10-26 and 0.7-2 dated 2009-08-14
DESCRIPTION | 14 ++++++++------ NAMESPACE | 1 + R/SQLiteSupport.R | 12 ++++++------ inst/HACKING | 14 ++++++++++++++ inst/NEWS | 7 +++++++ 5 files changed, 36 insertions(+), 12 deletions(-)
Author: Henrik Bengtsson
Diff between R.filesets versions 0.5.2 dated 2009-06-09 and 0.5.3 dated 2009-08-14
Title: Easy handling of and access to files organized in structured
directories
Description: A file set refers to a set of files located in one or more
directories on the file system. This package provides classes
and methods to locate, setup, subset, navigate and iterative
suchs sets. The API is designed such that these classes can be
subsetted to provide for instance a richer API for special file
formats. Moreover, a specific name format is defined such that
filenames and directories can be considered to have fullnames
which consists of a name followed by comma-separated tags.
This adds additional flexibility to identify file sets and
individual files. NOTE: This package's API should be
considered to been in an alpha stage. Its main purpose is
currently to support the aroma.* packages, where it is one of
the main core components; if you decide to build on top of this
package, please contact the author first.
DESCRIPTION | 10 +++++-----
R/GenericDataFileSet.R | 8 +++++++-
inst/NEWS | 5 +++++
3 files changed, 17 insertions(+), 6 deletions(-)
Author: Toni Giorgino
Diff between dtw versions 1.13-1 dated 2009-07-01 and 1.14-1 dated 2009-08-14
Title: Dynamic Time Warping algorithms
Description: Comprehensive implementation of Dynamic Time Warping
algorithms in R. DTW finds the optimal (least cumulative
distance) mapping between two time series. All common DTW
variants are covered, including local and global constraints,
arbitrary timeseries lenghts, distance definitions, MVM, etc.
Package computes cumulative distance, warping functions, plots,
normalizations, etc.
dtw-1.13-1/dtw/inst/dtw.bib |only
dtw-1.14-1/dtw/DESCRIPTION | 8 ++--
dtw-1.14-1/dtw/inst/CITATION | 64 +++++++++++++++++++-------------------
dtw-1.14-1/dtw/inst/ChangeLog | 6 +--
dtw-1.14-1/dtw/inst/doc |only
dtw-1.14-1/dtw/man/dtw-package.Rd | 8 +++-
dtw-1.14-1/dtw/man/dtw.Rd | 18 ++++++++--
dtw-1.14-1/dtw/man/mvm.Rd | 4 ++
dtw-1.14-1/dtw/man/stepPattern.Rd | 27 +++++++++-------
9 files changed, 80 insertions(+), 55 deletions(-)
Author: Rebecca Sela and Jeffrey Simonoff
Title: Regression Trees with Random Effects for Longitudinal (Panel)
Data
Description: This package estimates regression trees with random
effects as a way to use data mining techniques to describe
longitudinal or panel data.
Diff between REEMtree versions 0.8 dated 2009-07-18 and 0.81 dated 2009-08-13
DESCRIPTION | 8 ++++---- man/AutoCorrelationLRtest.Rd | 1 + man/REEMtree.Rd | 2 +- man/is.Rd | 2 +- man/plot.Rd | 2 +- man/print.Rd | 2 +- man/ranef.REEMtree.Rd | 2 +- man/tree.Rd | 2 +- 8 files changed, 11 insertions(+), 10 deletions(-)
Author: Ãivind Skare
Diff between FEST versions 0.05 dated 2009-07-31 and 0.06 dated 2009-08-13
Title: Identification of Family Relations using linked markers
Description: Identification of Family Relations using linked markers.
DESCRIPTION | 6 +++---
R/functions.R | 7 ++++---
data |only
man/SimulationStudy.Rd | 17 +++++++++++------
man/SortMerlinInputFiles.Rd | 14 +++++++-------
man/ThinMerlinInputFiles.Rd | 17 +++++++----------
man/affy.Rd | 1 +
man/affy.subset.Rd |only
8 files changed, 33 insertions(+), 29 deletions(-)
Author: Kurt Hornik, David Meyer, Christian Buchta
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and
matrices, based on index arrays and simple triplet
representations, respectively.
Diff between slam versions 0.1-2 dated 2009-08-08 and 0.1-3 dated 2009-08-13
DESCRIPTION | 8 ++++---- NAMESPACE | 47 ++++++++++++++++++++++++----------------------- R/matrix.R | 60 ++++++++++++++++++++++++++++++++++++++++++------------------ R/stm.R | 2 +- 4 files changed, 71 insertions(+), 46 deletions(-)
Author: Martyn Plummer
Title: Bayesian graphical models using MCMC
Description: Interface to the JAGS MCMC library
Diff between rjags versions 1.0.3-9 dated 2009-05-29 and 1.0.3-10 dated 2009-08-13
DESCRIPTION | 8 ++++---- R/mcarray.R | 5 +++-- R/windows/zzz.R | 19 +++++++++++-------- 3 files changed, 18 insertions(+), 14 deletions(-)
Author: Aaron A. King
Diff between ouch versions 2.5-6 dated 2009-07-21 and 2.5-7 dated 2009-08-13
Title: Ornstein-Uhlenbeck models for phylogenetic comparative
hypotheses
Description: Fit and compare Ornstein-Uhlenbeck models for evolution
along a phylogenetic tree.
ouch-2.5-6/ouch/inst/SVN-REVISION |only
ouch-2.5-7/ouch/DESCRIPTION | 10 ++++++----
ouch-2.5-7/ouch/R/ouchtree.R | 20 +++++++++++++++++++-
ouch-2.5-7/ouch/inst/ChangeLog | 10 ++++++++++
ouch-2.5-7/ouch/man/hansen.Rd | 2 +-
5 files changed, 36 insertions(+), 6 deletions(-)
Author: R-core members, Saikat DebRoy
Diff between foreign versions 0.8-36 dated 2009-06-09 and 0.8-37 dated 2009-08-13
Title: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase,
...
Description: Functions for reading and writing data stored by
statistical packages such as Minitab, S, SAS, SPSS, Stata,
Systat, ..., and for reading and writing .dbf (dBase) files.
ChangeLog | 11 +++++++++++
DESCRIPTION | 8 ++++----
man/read.S.Rd | 4 ++--
man/read.dta.Rd | 2 +-
man/read.epiinfo.Rd | 2 +-
man/read.spss.Rd | 4 ++--
man/read.ssd.Rd | 2 +-
man/write.dta.Rd | 4 +++-
src/stataread.c | 26 ++++++++++++++++++++++----
9 files changed, 47 insertions(+), 16 deletions(-)
Author: Kurt Hornik, with contributions from Walter Boehm
Title: Cluster ensembles
Description: CLUster Ensembles
Diff between clue versions 0.3-28 dated 2009-08-10 and 0.3-29 dated 2009-08-13
DESCRIPTION | 8 ++++---- R/pclust.R | 4 +++- R/utilities.R | 21 +++++++++++++++++---- inst/doc/clue.pdf |binary man/pclust.Rd | 24 +++++++++++++++++++----- 5 files changed, 43 insertions(+), 14 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.96-1 dated 2009-08-04 and 0.97 dated 2009-08-13
FrF2-0.96-1/FrF2/R/DesignAccessors.R |only FrF2-0.97/FrF2/DESCRIPTION | 8 ++-- FrF2-0.97/FrF2/NAMESPACE | 6 ++- FrF2-0.97/FrF2/R/FrF2.R | 50 +++++++++++++++++++++++---- FrF2-0.97/FrF2/R/add.center.R |only FrF2-0.97/FrF2/R/aliases.R | 23 ++++++++++-- FrF2-0.97/FrF2/R/aliasprint.R |only FrF2-0.97/FrF2/R/estimable2fis.R | 3 + FrF2-0.97/FrF2/R/fold.design.R |only FrF2-0.97/FrF2/R/iscube.R |only FrF2-0.97/FrF2/R/pb.R | 19 +++++++++- FrF2-0.97/FrF2/R/print.aliases.R |only FrF2-0.97/FrF2/inst/NEWS | 24 ++++++++++++ FrF2-0.97/FrF2/man/FrF2.Rd | 25 ++++++++++--- FrF2-0.97/FrF2/man/add.center.Rd |only FrF2-0.97/FrF2/man/aliases.Rd | 25 +++++++++++-- FrF2-0.97/FrF2/man/fold.design.Rd |only FrF2-0.97/FrF2/man/pb.Rd | 12 +++++- FrF2-0.97/FrF2/man/utilitiesCat.Rd | 1 FrF2-0.97/FrF2/man/utilitiesPB.Rd | 1 FrF2-0.97/FrF2/tests/FrF2test.Rout.save | 18 +++++---- FrF2-0.97/FrF2/tests/addcentertest.R |only FrF2-0.97/FrF2/tests/addcentertest.Rout.save |only FrF2-0.97/FrF2/tests/foldtest.R |only FrF2-0.97/FrF2/tests/foldtest.Rout.save |only 25 files changed, 178 insertions(+), 37 deletions(-)
Author: Steve Juggins
Title: An R package for the analysis of Quaternary science data
Description: Functions for the analysis of Quaternary science data,
including constrained clustering, WA, WAPLS, IKFA, MLRC and MAT
transfer functions, and stratigraphic diagrams.
Diff between rioja versions 0.5-2 dated 2009-08-08 and 0.5-3 dated 2009-08-13
rioja-0.5-2/rioja/man/IKFA.rd |only rioja-0.5-2/rioja/man/MLRC.rd |only rioja-0.5-2/rioja/man/PTF.rd |only rioja-0.5-2/rioja/man/Ponds.rd |only rioja-0.5-2/rioja/man/compare.datasets.rd |only rioja-0.5-2/rioja/man/interp.dataset.rd |only rioja-0.5-3/rioja/DESCRIPTION | 8 rioja-0.5-3/rioja/R/IKFA.r | 2 rioja-0.5-3/rioja/R/MAT.r | 12 rioja-0.5-3/rioja/R/PTF.r | 12 rioja-0.5-3/rioja/R/WAPLS.r | 2 rioja-0.5-3/rioja/R/cep.r | 27 rioja-0.5-3/rioja/R/inkspot.r | 15 rioja-0.5-3/rioja/R/readC2Model.r | 79 rioja-0.5-3/rioja/R/sp.plot.r |only rioja-0.5-3/rioja/R/utils.r | 46 rioja-0.5-3/rioja/inst/ChangeLog | 15 rioja-0.5-3/rioja/inst/example.datasets/RLGHLongCore.cep | 2826 +++++++-------- rioja-0.5-3/rioja/man/IKFA.Rd |only rioja-0.5-3/rioja/man/MLRC.Rd |only rioja-0.5-3/rioja/man/PTF.Rd |only rioja-0.5-3/rioja/man/Ponds.Rd |only rioja-0.5-3/rioja/man/WAPLS.Rd | 2 rioja-0.5-3/rioja/man/chclust.Rd | 6 rioja-0.5-3/rioja/man/compare.datasets.Rd |only rioja-0.5-3/rioja/man/inkspot.Rd | 14 rioja-0.5-3/rioja/man/interp.dataset.Rd |only rioja-0.5-3/rioja/man/read.C2Model.Rd | 4 rioja-0.5-3/rioja/man/read.CEP.Rd | 23 rioja-0.5-3/rioja/man/read.Tilia.Rd | 2 rioja-0.5-3/rioja/man/rioja.package.Rd | 10 rioja-0.5-3/rioja/man/sp.plot.Rd |only rioja-0.5-3/rioja/man/strat.plot.simple.Rd | 4 rioja-0.5-3/rioja/man/utils.Rd | 2 rioja-0.5-3/rioja/src/analog.c | 12 rioja-0.5-3/rioja/src/chclust.cpp | 27 rioja-0.5-3/rioja/src/mat.cpp | 134 rioja-0.5-3/rioja/src/mlrc.cpp | 4 rioja-0.5-3/rioja/src/mlrc.h | 2 rioja-0.5-3/rioja/src/newcin2.cpp | 69 rioja-0.5-3/rioja/src/open.c | 2 rioja-0.5-3/rioja/src/tilia.cpp | 27 42 files changed, 1767 insertions(+), 1621 deletions(-)
Author: Julien Barnier
Diff between rgrs versions 0.2-11 dated 2009-07-01 and 0.2-13 dated 2009-08-13
Title: Functions to make R usage in social sciences easier (in french)
Description: This package provides functions for beginners and social
sciences students or researchers. Currently it includes
functions for cross-tabulation, weighting, results export, and
maps plotting. The documentation and help pages are written in
french.
DESCRIPTION | 10 +++++-----
R/carte.eff.R | 3 ++-
R/carte.prop.R | 9 +++++----
R/carte.qual.R | 3 ++-
man/Cartographie.Rd | 12 +++++++++---
5 files changed, 23 insertions(+), 14 deletions(-)
Author: Walter R. Mebane, Jr.
Diff between rgenoud versions 5.6-5 dated 2009-08-07 and 5.6-6 dated 2009-08-13
Title: R version of GENetic Optimization Using Derivatives
Description: A genetic algorithm plus derivative optimizer
ChangeLog | 12 ++++++++----
DESCRIPTION | 8 ++++----
inst/doc/rgenoud.pdf |binary
man/genoud.Rd | 29 +++++++++++++++--------------
tests/tests.Rout.save | 22 +++++++++++-----------
5 files changed, 38 insertions(+), 33 deletions(-)
Author: Dirk Eddelbuettel
Diff between random versions 0.2.0 dated 2009-01-05 and 0.2.1 dated 2009-08-13
Title: True random numbers using random.org
Description: This package provides an interface to the true random
number service provided by the random.org website created by
Mads Haahr. The random.org web service samples atmospheric
noise via radio tuned to an unused broadcasting frequency
together with a skew correction algorithm due to John von
Neumann. More background is available in the included vignette
based on an essay by Mads Haahr. In its current form, the
package offers functions to retrieve random integers,
randomized sequences and random strings.
DESCRIPTION | 27 +++++++++++++++------------
R/random.R | 5 +++--
inst/ChangeLog | 10 +++++++++-
inst/doc/random-essay.pdf |binary
inst/doc/random-intro.pdf |binary
man/random.Rd | 2 +-
6 files changed, 28 insertions(+), 16 deletions(-)
Author: Andrej-Nikolai Spiess
Diff between qpcR versions 1.2-0 dated 2009-07-21 and 1.2-1 dated 2009-08-13
Title: Modelling and analysis of real-time PCR data
Description: Model fitting, optimal model selection and calculation of
various features that are essential in the analysis of
quantitative real-time polymerase chain reaction (qPCR).
qpcR-1.2-0/qpcR/R/pcropt2.R |only
qpcR-1.2-0/qpcR/R/pcrpred.r |only
qpcR-1.2-0/qpcR/man/pcropt2.rd |only
qpcR-1.2-0/qpcR/man/pcrplot.Rd |only
qpcR-1.2-0/qpcR/man/pcrpred.rd |only
qpcR-1.2-1/qpcR/DESCRIPTION | 8 +++---
qpcR-1.2-1/qpcR/NAMESPACE | 14 ++++++++---
qpcR-1.2-1/qpcR/R/BIC.r |only
qpcR-1.2-1/qpcR/R/PRESS.R | 7 ++++-
qpcR-1.2-1/qpcR/R/batchstat.r |only
qpcR-1.2-1/qpcR/R/curvemean.R | 39 ++++++++++++++++---------------
qpcR-1.2-1/qpcR/R/meanlist.r |only
qpcR-1.2-1/qpcR/R/modlist.R | 2 -
qpcR-1.2-1/qpcR/R/pcrGOF.R | 2 -
qpcR-1.2-1/qpcR/R/pcrboot.r |only
qpcR-1.2-1/qpcR/R/pcrfit.r | 39 +++++++++++++++++--------------
qpcR-1.2-1/qpcR/R/pcrplot.R | 40 --------------------------------
qpcR-1.2-1/qpcR/R/pcrpred.R |only
qpcR-1.2-1/qpcR/R/pcrsim.r |only
qpcR-1.2-1/qpcR/R/plot.pcrfit.R |only
qpcR-1.2-1/qpcR/R/predict.pcrfit.r |only
qpcR-1.2-1/qpcR/R/replist.r |only
qpcR-1.2-1/qpcR/R/update.pcrfit.r |only
qpcR-1.2-1/qpcR/data/qpcR_functions.rda |binary
qpcR-1.2-1/qpcR/man/BIC.Rd |only
qpcR-1.2-1/qpcR/man/Cy0.rd | 4 +--
qpcR-1.2-1/qpcR/man/S27.Rd | 2 -
qpcR-1.2-1/qpcR/man/batchstat.rd |only
qpcR-1.2-1/qpcR/man/calib.Rd | 2 +
qpcR-1.2-1/qpcR/man/calib2.rd | 4 ++-
qpcR-1.2-1/qpcR/man/curvemean.Rd | 9 +++----
qpcR-1.2-1/qpcR/man/guescini1.Rd | 4 ++-
qpcR-1.2-1/qpcR/man/meanlist.rd |only
qpcR-1.2-1/qpcR/man/midpoint.rd | 2 -
qpcR-1.2-1/qpcR/man/outlier.rd | 2 -
qpcR-1.2-1/qpcR/man/pcrGOF.Rd | 6 +++-
qpcR-1.2-1/qpcR/man/pcrbatch.Rd | 2 +
qpcR-1.2-1/qpcR/man/pcrboot.rd |only
qpcR-1.2-1/qpcR/man/pcrfit.Rd | 11 +++++++-
qpcR-1.2-1/qpcR/man/pcropt1.Rd | 2 +
qpcR-1.2-1/qpcR/man/pcrsim.rd |only
qpcR-1.2-1/qpcR/man/plot.pcrfit.Rd |only
qpcR-1.2-1/qpcR/man/predict.pcrfit.rd |only
qpcR-1.2-1/qpcR/man/propagate.Rd | 3 ++
qpcR-1.2-1/qpcR/man/qpcR_functions.rd | 4 +--
qpcR-1.2-1/qpcR/man/ratiocalc.Rd | 6 ++++
qpcR-1.2-1/qpcR/man/replist.rd |only
qpcR-1.2-1/qpcR/man/reps.Rd | 2 -
qpcR-1.2-1/qpcR/man/reps2.Rd | 2 -
qpcR-1.2-1/qpcR/man/reps3.Rd | 2 -
qpcR-1.2-1/qpcR/man/rutledge.Rd | 2 -
qpcR-1.2-1/qpcR/man/update.pcrfit.rd |only
52 files changed, 115 insertions(+), 107 deletions(-)
Author: Dan Kelley
Diff between plan versions 0.1.0 dated 2009-04-26 and 0.3-1 dated 2009-08-13
Title: Tools for project planning
Description: Supports the creation of burndown charts and gantt
diagrams.
DESCRIPTION | 11 ++++++-----
NEWS | 7 +++++--
R/burndown.R | 8 ++++++--
R/misc.R | 9 +++------
inst/doc/plan.pdf |binary
man/plot.burndown.Rd | 7 +++++--
6 files changed, 25 insertions(+), 17 deletions(-)
Author: Douglas Bates and Ana Ines Vazquez
Title: Pedigree-based mixed-effects models
Description: Fit pedigree-based mixed-effects models.
Diff between pedigreemm versions 0.2-3 dated 2009-07-02 and 0.2-4 dated 2009-08-13
DESCRIPTION | 8 ++++---- R/pedigree.R | 13 +++++++++---- 2 files changed, 13 insertions(+), 8 deletions(-)
Author: Arnost Komarek
Diff between mixAK versions 0.4 dated 2009-06-25 and 0.5 dated 2009-08-13
Title: Mixture of methods including mixtures
Description: This package contains a mixture of statistical methods
including the MCMC methods to analyze normal mixtures
DESCRIPTION | 10 -
R/GLMM_MCMC.R |only
R/GLMM_MCMCdata.R |only
R/GLMM_MCMCifit.R |only
R/GLMM_MCMCprior.b.R |only
R/GLMM_MCMCprior.beta.R |only
R/GLMM_MCMCprior.eps.R |only
R/GLMM_MCMCscale.b.R |only
R/GLMM_longitClust.R |only
R/NMixMCMC.R | 5
R/NMixPlugCondDensJoint2.GLMM_MCMC.R |only
R/NMixPlugCondDensMarg.GLMM_MCMC.R |only
R/NMixPlugDensJoint2.GLMM_MCMC.R |only
R/NMixPlugDensMarg.GLMM_MCMC.R |only
R/NMixPredCDFMarg.GLMM_MCMC.R |only
R/NMixPredCondDensJoint2.GLMM_MCMC.R |only
R/NMixPredCondDensMarg.GLMM_MCMC.R |only
R/NMixPredDensJoint2.GLMM_MCMC.R |only
R/NMixPredDensMarg.GLMM_MCMC.R |only
R/print.GLMM_MCMC.R |only
inst/CITATION | 2
inst/doc/Faithful.pdf |binary
inst/doc/Galaxy.pdf |binary
inst/doc/Tandmob.pdf |binary
man/GLMMMCMC.Rd |only
man/GLMMMCMCdata.Rd |only
man/GLMMMCMCifit.Rd |only
man/GLMMMCMCprior.b.Rd |only
man/GLMMMCMCprior.beta.Rd |only
man/GLMMMCMCprior.eps.Rd |only
man/GLMMMCMCscale.b.Rd |only
man/GLMMlongitClust.Rd |only
man/NMixMCMC.Rd | 6
man/NMixMCMCwrapper.Rd | 2
man/NMixPlugCondDensJoint2.Rd | 8 +
man/NMixPlugCondDensMarg.Rd | 8 +
man/NMixPlugDensJoint2.Rd | 8 +
man/NMixPlugDensMarg.Rd | 9 +
man/NMixPredCDFMarg.Rd | 8 +
man/NMixPredCondDensJoint2.Rd | 8 +
man/NMixPredCondDensMarg.Rd | 8 +
man/NMixPredDensJoint2.Rd | 9 +
man/NMixPredDensMarg.Rd | 8 +
src/AK_BLAS.cpp | 221 +++++++++++++++++++++++++++++++++++
src/AK_BLAS.h | 197 ++++++++++++++++++++++++++-----
src/AK_BSTAT.cpp | 30 ++++
src/AK_BSTAT.h | 28 +++-
src/AK_Basic.h | 81 ++++++++++--
src/AK_LAPACK.cpp | 76 ++++++++++++
src/AK_LAPACK.h | 19 +++
src/GLMM.h |only
src/GLMM_MCMC.cpp |only
src/GLMM_MCMC.h |only
src/GLMM_create_ZiS.cpp |only
src/GLMM_create_ZiS.h |only
src/GLMM_linear_predictors.cpp |only
src/GLMM_linear_predictors.h |only
src/GLMM_longitClust.cpp |only
src/GLMM_longitClust.h |only
src/GLMM_longitPred_nmix_gauss.cpp |only
src/GLMM_longitPred_nmix_gauss.h |only
src/GLMM_scale_ZitZi.cpp |only
src/GLMM_scale_ZitZi.h |only
src/GLMM_updateFixEf_gauss.cpp |only
src/GLMM_updateFixEf_gauss.h |only
src/GLMM_updateHyperVars_eps.cpp |only
src/GLMM_updateHyperVars_eps.h |only
src/GLMM_updateRanEf_nmix_gauss.cpp |only
src/GLMM_updateRanEf_nmix_gauss.h |only
src/GLMM_updateVars_eps.cpp |only
src/GLMM_updateVars_eps.h |only
src/NMix.h | 2
src/NMix_MCMC.cpp | 209 ++++++---------------------------
src/NMix_MCMC.h | 2
src/NMix_Utils.cpp | 214 +++++++++++++++++++++++++++++++++
src/NMix_Utils.h | 109 +++++++++++++++++
76 files changed, 1042 insertions(+), 245 deletions(-)
Author: Andrew Gelman
Diff between mi versions 0.08-04 dated 2009-07-24 and 0.08-04.01 dated 2009-08-13
Title: Missing Data Imputation and Model Checking
Description: Missing-data imputation and model checking
DESCRIPTION | 8 ++++----
man/convergence.plot.Rd | 9 ++++-----
man/mi.Rd | 10 +++-------
man/mi.binary.Rd | 4 ++--
man/mi.categorical.Rd | 4 ++--
man/mi.completed.Rd | 6 +++---
man/mi.continuous.Rd | 9 +++++++--
man/mi.count.Rd | 8 ++++++--
man/mi.fixed.Rd | 2 +-
man/mi.hist.Rd | 8 ++++----
man/mi.info.Rd | 8 +++-----
man/mi.info.update.Rd | 8 ++++----
man/mi.method.Rd | 6 +++---
man/mi.polr.Rd | 6 +++++-
man/mi.pooled.Rd | 2 +-
man/mi.preprocess.Rd | 8 ++++++++
man/mi.scatterplot.Rd | 10 +++++-----
man/missing.pattern.plot.Rd | 8 ++++----
man/noise.control.Rd | 9 ++++++++-
man/plot.mi.Rd | 8 ++++----
man/type.models.Rd | 6 ++++++
man/typecast.Rd | 10 +++++-----
man/write.mi.Rd | 15 +++++++++++++++
23 files changed, 107 insertions(+), 65 deletions(-)
Author: Heather Turner and David Firth
Title: Generalized Nonlinear Models
Description: Functions to specify and fit generalized nonlinear models,
including models with multiplicative interaction terms such as
the UNIDIFF model from sociology and the AMMI model from crop
science, and many others. Over-parameterized representations
of models are used throughout; functions are provided for
inference on estimable parameter combinations, as well as
standard methods for diagnostics etc.
Diff between gnm versions 0.9-9 dated 2009-04-29 and 0.10-0 dated 2009-08-13
gnm-0.10-0/gnm/DESCRIPTION | 8 gnm-0.10-0/gnm/R/expandCategorical.R | 43 gnm-0.10-0/gnm/R/gnm.R | 8 gnm-0.10-0/gnm/R/gnmFit.R | 74 gnm-0.10-0/gnm/R/print.profile.gnm.R | 6 gnm-0.10-0/gnm/inst/NEWS | 22 gnm-0.10-0/gnm/inst/doc/gnmOverview-Rotate_and_scale.pdf |only gnm-0.10-0/gnm/inst/doc/gnmOverview.Rnw | 316 gnm-0.10-0/gnm/inst/doc/gnmOverview.pdf | 5484 ++++++++------- gnm-0.10-0/gnm/man/backPain.Rd | 9 gnm-0.10-0/gnm/man/expandCategorical.Rd | 182 gnm-0.10-0/gnm/man/gnm.Rd | 4 gnm-0.9-9/gnm/data/occupationalStatus.R |only gnm-0.9-9/gnm/man/occupationalStatus.Rd |only 14 files changed, 3373 insertions(+), 2783 deletions(-)
Author: Jakson Aquino
Diff between descr versions 0.3.0 dated 2009-06-08 and 0.3.1 dated 2009-08-13
Title: Descriptive statistics
Description: This package contains functions to describe weighted
categorical variables and functions to facilitate the character
encoding conversion of objects.
COPYING | 2
DESCRIPTION | 11 -
NAMESPACE | 10 +
R/CrossTable.R |only
R/UTF-8.R |only
R/compmeans.R |only
R/crosstab.R |only
R/descr.R | 299 -----------------------------------
R/freq.R |only
R/fwf2csv.R |only
R/xtable.R |only
inst/po/pt_BR/LC_MESSAGES/R-descr.mo |binary
man/CrossTable.Rd |only
man/compmeans.Rd | 5
man/crosstab.Rd | 44 ++---
man/descr.Rd | 2
man/freq.Rd | 23 +-
po/R-descr.pot | 236 +++++++++++++++++++++++----
po/R-pt_BR.po | 246 ++++++++++++++++++++++++----
update_po.sh | 2
20 files changed, 458 insertions(+), 422 deletions(-)
Author: Jeffrey A. Ryan
Title: R API to Interactive Brokers Trader Workstation
Description: Provides native Raccess to Interactive Brokers Trader
Workstation API.
Diff between IBrokers versions 0.2-2 dated 2009-06-14 and 0.2-4 dated 2009-08-13
IBrokers-0.2-2/IBrokers/R/readBin.R |only IBrokers-0.2-4/IBrokers/DESCRIPTION | 8 IBrokers-0.2-4/IBrokers/NAMESPACE | 6 IBrokers-0.2-4/IBrokers/R/cancelOrder.R | 34 IBrokers-0.2-4/IBrokers/R/eWrapper.MktData.CSV.R | 129 - IBrokers-0.2-4/IBrokers/R/eWrapper.MktDepth.CSV.R | 21 IBrokers-0.2-4/IBrokers/R/eWrapper.R | 64 IBrokers-0.2-4/IBrokers/R/eWrapper.data.R |only IBrokers-0.2-4/IBrokers/R/eWrapper.snapshot.R |only IBrokers-0.2-4/IBrokers/R/eventHandlers.R | 76 IBrokers-0.2-4/IBrokers/R/placeOrder.R | 108 - IBrokers-0.2-4/IBrokers/R/processMsg.R | 55 IBrokers-0.2-4/IBrokers/R/reqAccountUpdates.R | 101 IBrokers-0.2-4/IBrokers/R/reqContractDetails.R | 133 - IBrokers-0.2-4/IBrokers/R/reqCurrentTime.R | 28 IBrokers-0.2-4/IBrokers/R/reqIds.R | 25 IBrokers-0.2-4/IBrokers/R/reqMktData.R | 117 + IBrokers-0.2-4/IBrokers/R/reqOpenOrders.R | 18 IBrokers-0.2-4/IBrokers/R/reqRealTimeBars.R | 151 - IBrokers-0.2-4/IBrokers/R/twsComboLeg.R |only IBrokers-0.2-4/IBrokers/R/twsConnect.R | 5 IBrokers-0.2-4/IBrokers/R/twsContract.R | 8 IBrokers-0.2-4/IBrokers/R/twsExecutionFilter.R |only IBrokers-0.2-4/IBrokers/R/twsIDs.R | 4 IBrokers-0.2-4/IBrokers/R/twsOrder.R | 20 IBrokers-0.2-4/IBrokers/R/twsTickType.R | 6 IBrokers-0.2-4/IBrokers/R/zzz.R | 3 IBrokers-0.2-4/IBrokers/inst/doc/IBrokers.pdf | 2030 +++++++++---------- IBrokers-0.2-4/IBrokers/inst/doc/RealTime.pdf | 2303 ++++++++++------------ IBrokers-0.2-4/IBrokers/man/IBrokers-package.Rd | 11 IBrokers-0.2-4/IBrokers/man/eWrapper.Rd | 30 IBrokers-0.2-4/IBrokers/man/internal.Rd | 1 IBrokers-0.2-4/IBrokers/man/reqAccountUpdates.Rd | 45 IBrokers-0.2-4/IBrokers/man/reqRealTimeBars.Rd | 4 34 files changed, 2882 insertions(+), 2662 deletions(-)
Author: Ulrike Groemping
Title: Full factorials, orthogonal arrays and base utilities for DoE
packages
Description: This package creates full factorial experimental designs
and designs based on orthogonal arrays for (industrial)
experiments. Additionally, it provides some utility functions
used also by other DoE packages.
Diff between DoE.base versions 0.5 dated 2009-07-31 and 0.6-1 dated 2009-08-13
DoE.base-0.5/DoE.base/man/utitlities.Rd |only DoE.base-0.6-1/DoE.base/DESCRIPTION | 8 - DoE.base-0.6-1/DoE.base/NAMESPACE | 4 DoE.base-0.6-1/DoE.base/R/DesignAccessors.r | 2 DoE.base-0.6-1/DoE.base/R/cross.design.R | 131 ++++++++++++++++----- DoE.base-0.6-1/DoE.base/R/formula.design.R |only DoE.base-0.6-1/DoE.base/R/paramtowide.R | 48 +++++++ DoE.base-0.6-1/DoE.base/R/printandsummary.design.R | 16 +- DoE.base-0.6-1/DoE.base/R/qua.design.R |only DoE.base-0.6-1/DoE.base/inst/NEWS | 34 ++++- DoE.base-0.6-1/DoE.base/man/class-design.Rd | 12 - DoE.base-0.6-1/DoE.base/man/cross.design.Rd | 57 ++++++--- DoE.base-0.6-1/DoE.base/man/formula.design.Rd |only DoE.base-0.6-1/DoE.base/man/oa.design.Rd | 3 DoE.base-0.6-1/DoE.base/man/param.design.Rd | 45 +++---- DoE.base-0.6-1/DoE.base/man/qua.design.Rd |only DoE.base-0.6-1/DoE.base/man/utilities.Rd |only DoE.base-0.6-1/DoE.base/tests/test_cross.Rout.save | 29 +++- 18 files changed, 289 insertions(+), 100 deletions(-)
Author: James Honaker
Diff between Amelia versions 1.2-12 dated 2009-07-18 and 1.2-13 dated 2009-08-13
Title: Amelia II: A Program for Missing Data
Description: Amelia II "multiply imputes" missing data in a single
cross-section (such as a survey), from a time series (like
variables collected for each year in a country), or from a
time-series-cross-sectional data set (such as collected by
years for each of several countries). Amelia II implements our
bootstrapping-based algorithm that gives essentially the same
answers as the standard IP or EMis approaches, is usually
considerably faster than existing approaches and can handle
many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but
please let us know if you find to the contrary!). The program
also generalizes existing approaches by allowing for trends in
time series across observations within a cross-sectional unit,
as well as priors that allow experts to incorporate beliefs
they have about the values of missing cells in their data.
Amelia II also includes useful diagnostics of the fit of
multiple imputation models. The program works from the R
command line or via a graphical user interface that does not
require users to know R.
DESCRIPTION | 8
R/amcheck.r | 10
inst/doc/amelia.Rnw | 2
inst/doc/amelia.pdf | 7302 +++++++++++++++++++++++++--------------------------
inst/doc/copyRd.Rout | 4
inst/doc/index.shtml | 4
6 files changed, 3680 insertions(+), 3650 deletions(-)
Author: Thomas Kiefer
Diff between fechner versions 1.0-0 dated 2009-02-16 and 1.0-1 dated 2009-08-10
Title: Fechnerian Scaling of Discrete Object Sets
Description: Functions and example datasets for Fechnerian scaling of
discrete object sets. It computes Fechnerian distances among
objects representing subjective dissimilarities, and other
related information. See package?fechner for an overview.
COPYING |only
COPYRIGHTS |only
DESCRIPTION | 35 +++---
NEWS |only
R/check.data.R | 18 +--
R/check.regular.R | 88 ++++++++--------
R/fechner.R | 218 ++++++++++++++++++++---------------------
R/plot.fechner.R | 22 ++--
R/shortest.paths.information.R | 2
R/summary.fechner.R | 20 +--
inst |only
man/check.data.Rd | 34 +++---
man/check.regular.Rd | 16 +--
man/fechner-package.Rd | 13 +-
man/fechner.Rd | 52 ++++-----
man/morse.Rd | 7 -
man/noRegMin.Rd | 9 -
man/plot.fechner.Rd | 37 +++---
man/print.fechner.Rd | 6 -
man/print.summary.fechner.Rd | 8 -
man/regMin.Rd | 7 -
man/summary.fechner.Rd | 39 +++----
man/wish.Rd | 7 -
23 files changed, 321 insertions(+), 317 deletions(-)
Author: Philippe Grosjean
Title: SciViews GUI API - Sweave functions
Description: Supporting functions for the GUI API (Sweave functions)
Diff between svSweave versions 0.9-0 dated 2009-06-28 and 0.9-1 dated 2009-08-10
DESCRIPTION | 10 ++++++---- NEWS | 5 ++++- R/cleanLyxRnw.R | 9 ++++----- man/cleanLyxRnw.Rd | 4 ++-- 4 files changed, 16 insertions(+), 12 deletions(-)
Author: Claus Dethlefsen, Soren Lundbye-Christensen and Anette Luther
Christensen
Title: State Space Models in R
Description: A glm-like formula language to define dynamic generalized
linear models (state space models). Includes functions for
Kalman filtering and smoothing. Estimation of variance matrices
can be perfomred using the EM algorithm in case of Gaussian
models. Read help(sspir) to get started.
Diff between sspir versions 0.2.3 dated 2007-04-19 and 0.2.7 dated 2009-08-10
CHANGES |only DESCRIPTION | 30 +++++++---- NAMESPACE | 6 +- R/EMalgo.R |only R/SS.R | 54 ++++++++++++++++++-- R/getFamily.R | 14 ++--- R/kfs.R | 148 +++++++++++++++++++++++++++++++++++++++++++++++++++---- R/simulation.R | 2 R/ssm.R | 5 + man/EMalgo.Rd |only man/SS.Rd | 14 ++--- man/kfs.Rd | 4 - man/kurit.Rd | 2 man/recursion.Rd | 2 14 files changed, 234 insertions(+), 47 deletions(-)
Author: Martin Maechler and many others.
Title: Utilities from Seminar fuer Statistik ETH Zurich
Description: Useful utilities ['goodies'] from Seminar fuer Statistik
ETH Zurich, many ported from S-plus times.
Diff between sfsmisc versions 1.0-7 dated 2009-01-11 and 1.0-8 dated 2009-08-10
ChangeLog | 17 +++++++++++++++++ DESCRIPTION | 12 +++++++----- R/unix/Sys.ps.R | 1 + inst/ChangeLog | 17 +++++++++++++++++ man/Duplicated.Rd | 2 +- man/uniqueL.Rd | 5 ++++- man/unix/Sys.cpuinfo.Rd | 6 +++++- 7 files changed, 52 insertions(+), 8 deletions(-)
Author: Kurt Hornik and David Meyer
Title: Data Structures and Algorithms for Relations
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate
functions, and fitters for consensus relations.
Diff between relations versions 0.5-2 dated 2009-07-01 and 0.5-3 dated 2009-08-10
DESCRIPTION | 10 +++++----- NEWS | 4 ++++ R/dissimilarity.R | 5 ++++- R/fitters.R | 4 ++-- R/pclust.R | 10 +++++----- inst/NEWS | 4 ++++ inst/doc/relations.Rnw | 29 ++++++++++++++--------------- inst/doc/relations.pdf |binary man/algebra.Rd | 10 +++++----- man/choice.Rd | 2 +- man/consensus.Rd | 12 +++++++----- man/dissimilarity.Rd | 2 +- man/incidence.Rd | 6 +++--- man/pclust.Rd | 2 +- man/plot.Rd | 15 ++++++++------- man/relation.Rd | 5 +++-- man/scores.Rd | 4 ++-- 17 files changed, 69 insertions(+), 55 deletions(-)
Author: Original S code by Patrick J. Burns. Ported to R by Nick
Efthymiou. Adapted to new R releases by Claus Dethlefsen.
Title: Directed and undirected graphs
Description: Simple tools for constructing and manipulating objects of
class mathgraph from the book "S Poetry", available at
http://www.burns-stat.com/pages/spoetry.html
Diff between mathgraph versions 0.9-8 dated 2007-04-19 and 0.9-10 dated 2009-08-10
DESCRIPTION | 28 +++++++++++++++------------- LICENSE |only man/adjamat.Rd | 4 ++-- man/getpath.Rd | 4 ++-- man/incidmat.Rd | 4 ++-- man/mathgraph.Rd | 4 ++-- 6 files changed, 23 insertions(+), 21 deletions(-)
Author: Kurt Hornik, with contributions from Walter Boehm
Title: Cluster ensembles
Description: CLUster Ensembles
Diff between clue versions 0.3-27 dated 2009-02-19 and 0.3-28 dated 2009-08-10
clue-0.3-27/clue/man/agreement.Rd |only clue-0.3-27/clue/man/bag.Rd |only clue-0.3-27/clue/man/boot.Rd |only clue-0.3-27/clue/man/classes.Rd |only clue-0.3-27/clue/man/consensus.Rd |only clue-0.3-27/clue/man/dissimilarity.Rd |only clue-0.3-27/clue/man/ensemble.Rd |only clue-0.3-27/clue/man/fuzziness.Rd |only clue-0.3-27/clue/man/margin.Rd |only clue-0.3-27/clue/man/medoid.Rd |only clue-0.3-27/clue/man/membership.Rd |only clue-0.3-27/clue/man/object_names.Rd |only clue-0.3-27/clue/man/pam.Rd |only clue-0.3-27/clue/man/predict.Rd |only clue-0.3-27/clue/man/prototypes.Rd |only clue-0.3-27/clue/man/tabulate.Rd |only clue-0.3-27/clue/man/ultrametric.Rd |only clue-0.3-27/clue/man/validity.Rd |only clue-0.3-28/clue/DESCRIPTION | 10 - clue-0.3-28/clue/NAMESPACE | 1 clue-0.3-28/clue/R/dissimilarity.R | 43 ++++++ clue-0.3-28/clue/R/pclust.R | 38 +++-- clue-0.3-28/clue/R/registration.R | 3 clue-0.3-28/clue/inst/CITATION | 4 clue-0.3-28/clue/inst/doc/clue.Rnw | 4 clue-0.3-28/clue/inst/doc/clue.pdf |binary clue-0.3-28/clue/man/cl_agreement.Rd |only clue-0.3-28/clue/man/cl_bag.Rd |only clue-0.3-28/clue/man/cl_boot.Rd |only clue-0.3-28/clue/man/cl_classes.Rd |only clue-0.3-28/clue/man/cl_consensus.Rd |only clue-0.3-28/clue/man/cl_dissimilarity.Rd |only clue-0.3-28/clue/man/cl_ensemble.Rd |only clue-0.3-28/clue/man/cl_fuzziness.Rd |only clue-0.3-28/clue/man/cl_margin.Rd |only clue-0.3-28/clue/man/cl_medoid.Rd |only clue-0.3-28/clue/man/cl_membership.Rd |only clue-0.3-28/clue/man/cl_object_names.Rd |only clue-0.3-28/clue/man/cl_pam.Rd |only clue-0.3-28/clue/man/cl_pclust.Rd |only clue-0.3-28/clue/man/cl_predict.Rd |only clue-0.3-28/clue/man/cl_prototypes.Rd |only clue-0.3-28/clue/man/cl_tabulate.Rd |only clue-0.3-28/clue/man/cl_ultrametric.Rd |only clue-0.3-28/clue/man/cl_validity.Rd |only clue-0.3-28/clue/man/hierarchy.Rd | 2 clue-0.3-28/clue/man/l1_fit_ultrametric.Rd | 2 clue-0.3-28/clue/man/ls_fit_sum_of_ultrametrics.Rd | 2 clue-0.3-28/clue/man/ls_fit_ultrametric.Rd | 2 clue-0.3-28/clue/man/pclust.Rd | 145 +++++++++++---------- clue-0.3-28/clue/man/sumt.Rd | 4 51 files changed, 169 insertions(+), 91 deletions(-)
Author: Peter K Dunn
Diff between tweedie versions 1.6.8 dated 2009-07-18 and 2.0.0 dated 2009-08-10
Title: Tweedie exponential family models
Description: Maximum likelihood computations for Tweedie families.
CHANGE.log | 12
DESCRIPTION | 8
R/tweedie.R | 63 +-
man/tweedie-package.Rd | 5
man/tweedie.profile.Rd | 44 +
src/tweedie.f | 1100 ++++++++++++++++++++++++-------------------------
6 files changed, 642 insertions(+), 590 deletions(-)
Author: Mark Stevenson
Diff between epiR versions 0.9-18 dated 2009-06-25 and 0.9-19 dated 2009-08-10
Title: Functions for analysing epidemiological data
Description: A package for analysing epidemiological data. Contains
functions for directly and indirectly adjusting measures of
disease frequency, quantifying measures of association on the
basis of single or multiple strata of count data presented in a
contingency table, and computing confidence intervals around
incidence risk and incidence rate estimates. Miscellaneous
functions for use in meta-analysis, diagnostic test
interpretation, and sample size calculations.
DESCRIPTION | 8
R/epi.2by2.R | 474 +--
R/epi.conf.R | 131
R/epi.descriptives.R | 2
R/epi.detectsize.R | 40
R/epi.dsl.R | 75
R/epi.iv.R | 70
R/epi.mh.R | 314 +-
R/epi.prev.R | 60
R/epi.smd.R | 29
R/epi.studysize.R | 197 -
R/epi.tests.R | 267 +
doc/epiR.pdf | 6556 ++++++++++++++++++++++++------------------------
man/epi.2by2.Rd | 24
man/epi.conf.Rd | 12
man/epi.descriptives.Rd | 4
man/epi.detectsize.Rd | 13
man/epi.dsl.Rd | 10
man/epi.iv.Rd | 8
man/epi.mh.Rd | 16
man/epi.prev.Rd | 13
man/epi.smd.Rd | 10
man/epi.studysize.Rd | 82
man/epi.tests.Rd | 35
24 files changed, 4387 insertions(+), 4063 deletions(-)
Author: Tomoaki Nakatani
Diff between ccgarch versions 0.1.4-2 dated 2009-05-29 and 0.1.6 dated 2009-08-10
Title: Conditional Correlation GARCH models
Description: Functions for estimating and simulating the family of the
CC-GARCH models.
ccgarch-0.1.4-2/ccgarch/TODO |only
ccgarch-0.1.6/ccgarch/DESCRIPTION | 8 ++--
ccgarch-0.1.6/ccgarch/R/dcc_estimation.R | 24 +++++++------
ccgarch-0.1.6/ccgarch/R/loglik_dcc.R | 3 +
ccgarch-0.1.6/ccgarch/man/analytical_Hessian.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/analytical_grad.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/d2lv.Rd | 8 +---
ccgarch-0.1.6/ccgarch/man/dcc_est.Rd | 8 +---
ccgarch-0.1.6/ccgarch/man/dcc_estimation.Rd | 19 +++++------
ccgarch-0.1.6/ccgarch/man/dcc_estimation1.Rd | 14 +-------
ccgarch-0.1.6/ccgarch/man/dcc_estimation2.Rd | 8 +---
ccgarch-0.1.6/ccgarch/man/dcc_results.Rd | 7 +---
ccgarch-0.1.6/ccgarch/man/dcc_sim.Rd | 12 +++---
ccgarch-0.1.6/ccgarch/man/dlc.Rd | 10 ++---
ccgarch-0.1.6/ccgarch/man/dlv.Rd | 10 ++---
ccgarch-0.1.6/ccgarch/man/dlv_est.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/eccc_estimation.Rd | 8 ++--
ccgarch-0.1.6/ccgarch/man/eccc_sim.Rd | 14 ++++----
ccgarch-0.1.6/ccgarch/man/fourth.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/grad_dcc2.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/grad_full_likelihood.Rd | 8 ++--
ccgarch-0.1.6/ccgarch/man/jb_test.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/ljung_box_test.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/loglik_dcc.Rd | 12 +++---
ccgarch-0.1.6/ccgarch/man/loglik_dcc1.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/loglik_dcc2.Rd | 6 +--
ccgarch-0.1.6/ccgarch/man/loglik_eccc.Rd | 8 ++--
ccgarch-0.1.6/ccgarch/man/p_mat.Rd | 5 +-
ccgarch-0.1.6/ccgarch/man/rob_kr.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/rob_sk.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/stationarity.Rd | 5 +-
ccgarch-0.1.6/ccgarch/man/stcc_sim.Rd | 16 ++++-----
ccgarch-0.1.6/ccgarch/man/tr_func.Rd | 2 -
ccgarch-0.1.6/ccgarch/man/uni_vola.Rd | 4 +-
ccgarch-0.1.6/ccgarch/man/uni_vola_sim.Rd | 10 ++---
ccgarch-0.1.6/ccgarch/man/vdR.Rd | 8 ++--
ccgarch-0.1.6/ccgarch/man/vec_garch_derivative.Rd | 8 ++--
ccgarch-0.1.6/ccgarch/man/vector_garch.Rd | 4 +-
ccgarch-0.1.6/ccgarch/src/R_dcc_sim.c | 38 +++++++++-------------
ccgarch-0.1.6/ccgarch/src/R_eccc_sim.c | 29 +++++++---------
ccgarch-0.1.6/ccgarch/src/R_stcc_sim.c | 24 +++++--------
41 files changed, 181 insertions(+), 209 deletions(-)
Author: Manuel Morales
Diff between sciplot versions 1.0-5 dated 2009-04-15 and 1.0-6 dated 2009-08-09
Title: Scientific Graphing Functions for Factorial Designs
Description: A collection of functions that creates graphs with error
bars for data collected from one-way or higher factorial
designs.
sciplot-1.0-5/sciplot/R/bargraphCI2.R |only
sciplot-1.0-6/sciplot/CHANGELOG | 1 +
sciplot-1.0-6/sciplot/DESCRIPTION | 6 +++---
sciplot-1.0-6/sciplot/R/lineplot.CI.R | 19 +++++++++++++------
4 files changed, 17 insertions(+), 9 deletions(-)
Author: Kurt Hornik, David Meyer, Christian Buchta
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and
matrices, based on index arrays and simple triplet
representations, respectively.
Diff between slam versions 0.1-1 dated 2009-07-01 and 0.1-2 dated 2009-08-08
DESCRIPTION | 8 +-- R/array.R | 12 ++--- R/matrix.R | 120 ++++++++++++++++++++++++++++++++++++---------------------- man/matrix.Rd | 2 4 files changed, 86 insertions(+), 56 deletions(-)
Author: Felix Kaminsky
Diff between estout versions 0.5-1 dated 2009-07-31 and 0.6-1 dated 2009-08-08
Title: Estimates Output
Description: The function collection stores the estimates of several
models and formats it to a table of the form estimate starred
and std.err. below. The default output is LaTeX but output to
CSV for later editing in a spreadsheet tool is possible as
well. It works for linear models (lm) and panel models from the
"plm"-package (plm). The added "descsto" and "desctab" enable
you to export descriptive statistics of data-frames and single
variables to LaTeX and CSV.
DESCRIPTION | 10 ++++++----
R/descsto.R |only
R/desctab.R |only
R/eststo.R | 10 ++++++++--
R/esttab.R | 18 +++++++-----------
man/descsto.Rd |only
man/desctab.Rd |only
man/eststo.Rd | 10 +++++-----
8 files changed, 26 insertions(+), 22 deletions(-)
Author: Jean Hausser and Korbinian Strimmer
Title: Entropy and Mutual Information Estimation
Description: This package implements various estimators of entropy,
such as the shrinkage estimator by Hausser and Strimmer, the
maximum likelihood and the Millow-Madow estimator, various
Bayesian estimators, and the Chao-Shen estimator. It also
offers an R interface to the NSB estimator. Furthermore, it
provides functions for estimating mutual information.
Diff between entropy versions 1.1.3 dated 2009-01-09 and 1.1.4 dated 2009-08-08
DESCRIPTION | 21 ++++++++++++--------- NEWS | 5 +++++ man/entropy.package.Rd | 4 ++-- man/entropy.shrink.Rd | 8 +++++--- 4 files changed, 24 insertions(+), 14 deletions(-)
Author: Graham Williams
Diff between rattle versions 2.4.83 dated 2009-07-18 and 2.4.90 dated 2009-08-08
Title: A graphical user interface for data mining in R using GTK
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data
mining. The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file (or via
ODBC), transform and explore the data, build and evaluate
models, and export models as PMML (predictive modelling markup
language) or as scores. All of this with knowing little about
R. All R commands are logged and commented through the log tab
and so available to the user as a script file or as an aide to
the user to interact directly with R itself. Rattle also
exports a number of utility functions and the graphical user
interface, invoked as rattle(), does not need to be run to
deploy these.
DESCRIPTION | 8
R/data.R | 46 +
R/evaluate.R | 60 -
R/log.R | 17
R/model.R | 4
R/projects.R | 12
R/random_forest.R | 27
R/rattle.R | 16
R/transform.R | 159 +++--
R/zzz.R | 4
data/audit.RData |binary
data/weather.RData |binary
data/weatherCanberra.RData |binary
data/weatherSydney.RData |binary
inst/arff/weather.arff | 746 ++++++++++++------------
inst/arff/weatherCanberra.arff | 1265 +++++++++++++++++++++--------------------
inst/arff/weatherSydney.arff | 1075 +++++++++++++++++-----------------
inst/csv/weather.csv | 732 +++++++++++------------
inst/csv/weatherCanberra.csv | 1251 ++++++++++++++++++++--------------------
inst/csv/weatherSydney.csv | 63 +-
inst/etc/rattle.glade | 65 +-
man/internal.Rd | 1
man/plotRisk.Rd | 6
23 files changed, 2922 insertions(+), 2635 deletions(-)
Author: Graham Williams, Michael Hahsler (arules), Zementis Inc, Hemant
Ishwaran, Udaya B. Kogalur, Rajarshi Guha
Title: Generate PMML for various models
Description: The Predictive Modelling Markup Language (PMML) is a
language for representing models, in an application independent
way. Such models can then be loaded into other applications
supporting PMML, including ADAPA from Zementis, Teradata
Warehouse Miner and IBM's DB2. The package provides a generic
pmml function to generate pmml for an object. Using a S3
generic function the approriate method for the class of the
supplied object is dispatched. The package currently supports
the export of PMML for linear regression, SVMs, rpart
classification trees, randomSurvivalForest forest models, and
kmeans clusters. This package is part of the Rattle toolkit.
Diff between pmml versions 1.2.15 dated 2009-06-24 and 1.2.17 dated 2009-08-08
DESCRIPTION | 8 +-- R/pmml.R | 134 +++++++++++++++++++++++++++++++++++++++++++++--------- R/pmml.kmeans.R | 18 ++++--- R/pmml.lm.R | 11 ++-- R/pmml.multinom.R | 5 ++ R/pmml.nnet.R | 3 + R/pmml.rpart.R | 15 ++++-- 7 files changed, 154 insertions(+), 40 deletions(-)
Author: John Verzani
Title: Toolkit implementation of gWidgets API for use with web pages
Description: Port of gWidgets API to www using RApache
(http://biostat.mc.vanderbilt.edu/rapache/index.html) to link R
with a web page and Ext JavaScript libararies to create and
manipulate widgets. Needs Ext 3.0 or greater. (www.extjs.com)
Diff between gWidgetsWWW versions 0.0-6 dated 2009-03-03 and 0.0-8 dated 2009-08-08
gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-actions.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-buttons.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-editdata.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-form.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gcombobox.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-ggooglemaps.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-ghtml.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-ghtml.txt |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gprocessingjs.R |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gprocessingjs.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gui-data.R |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gui-help.R |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gui-helpers.R |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gui-plots.R |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gui-ttest.R |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gui-ttest.orig |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gui-variables.R |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gui-widget.R |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gui.R |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-gui.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-index.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-layouts.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-t-test.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-widgets-1.png |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-widgets-1.txt |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-widgets.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-widgets.png |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-widgets.txt |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/Examples/ex-windows.html |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/doc/gWIdgetsWWW.Rnw |only gWidgetsWWW-0.0-6/gWidgetsWWW/inst/doc/gWIdgetsWWW.pdf |only gWidgetsWWW-0.0-8/gWidgetsWWW/DESCRIPTION | 24 gWidgetsWWW-0.0-8/gWidgetsWWW/NAMESPACE | 11 gWidgetsWWW-0.0-8/gWidgetsWWW/NEWS | 38 + gWidgetsWWW-0.0-8/gWidgetsWWW/R/aaa.R | 112 ++- gWidgetsWWW-0.0-8/gWidgetsWWW/R/common.R | 5 gWidgetsWWW-0.0-8/gWidgetsWWW/R/gcalendar.R | 2 gWidgetsWWW-0.0-8/gWidgetsWWW/R/gcanvas.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/R/gcheckboxgroup.R | 8 gWidgetsWWW-0.0-8/gWidgetsWWW/R/gcombobox.R | 4 gWidgetsWWW-0.0-8/gWidgetsWWW/R/gdf.R | 13 gWidgetsWWW-0.0-8/gWidgetsWWW/R/gedit.R | 4 gWidgetsWWW-0.0-8/gWidgetsWWW/R/gfile.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/R/gformlayout.R | 56 + gWidgetsWWW-0.0-8/gWidgetsWWW/R/ggooglemaps.R | 179 ------ gWidgetsWWW-0.0-8/gWidgetsWWW/R/ghtml.R | 8 gWidgetsWWW-0.0-8/gWidgetsWWW/R/gimage.R | 31 - gWidgetsWWW-0.0-8/gWidgetsWWW/R/glabel.R | 2 gWidgetsWWW-0.0-8/gWidgetsWWW/R/gprocessingjs.R | 4 gWidgetsWWW-0.0-8/gWidgetsWWW/R/gradio.R | 92 --- gWidgetsWWW-0.0-8/gWidgetsWWW/R/gslider.R | 41 - gWidgetsWWW-0.0-8/gWidgetsWWW/R/gspinbutton.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/R/gstatusbar.R | 14 gWidgetsWWW-0.0-8/gWidgetsWWW/R/gsvg.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/R/gtable.R | 2 gWidgetsWWW-0.0-8/gWidgetsWWW/R/gwindow.R | 281 ++++------ gWidgetsWWW-0.0-8/gWidgetsWWW/R/icons.R | 6 gWidgetsWWW-0.0-8/gWidgetsWWW/README | 14 gWidgetsWWW-0.0-8/gWidgetsWWW/TODO.txt | 56 + gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/brew-gWidgets.brew |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-actions.R | 4 gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-add-widget-dynamically.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-buttons.R | 3 gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-canvas.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-clt.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-editdata.R | 2 gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-form.R | 10 gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-gcombobox.R | 3 gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-ggooglemaps.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-ggplot2.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-ghtml.R | 64 +- gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-helloworld.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-image.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-index.R | 202 ++----- gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-layouts.R | 3 gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-survey.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-svg.R |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-t-test.R | 57 +- gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-widgets.R | 8 gWidgetsWWW-0.0-8/gWidgetsWWW/inst/Examples/ex-windows.R | 20 gWidgetsWWW-0.0-8/gWidgetsWWW/inst/css |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/doc/gWidgetsWWW.Rnw |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/doc/gWidgetsWWW.pdf |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/javascript/FileUploadField.js |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/javascript/GMapPanel.js |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/javascript/ext.ux.example.js |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/javascript/ext.ux.imageBox.js |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/javascript/ext.ux.slidertip.js |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/javascript/ext.ux.spinner.js |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/javascript/ext.ux.spinnerformfield.js |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/javascript/ext.ux.statusbar.js |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/scripts |only gWidgetsWWW-0.0-8/gWidgetsWWW/inst/templates |only gWidgetsWWW-0.0-8/gWidgetsWWW/man/gWidgets-helpers.Rd | 8 gWidgetsWWW-0.0-8/gWidgetsWWW/man/gWidgetsWWW-package.Rd | 144 +++-- gWidgetsWWW-0.0-8/gWidgetsWWW/man/gcanvas.Rd |only gWidgetsWWW-0.0-8/gWidgetsWWW/man/ggooglemaps.Rd | 2 gWidgetsWWW-0.0-8/gWidgetsWWW/man/gprocessingjs.Rd | 2 gWidgetsWWW-0.0-8/gWidgetsWWW/man/gsvg.Rd |only 99 files changed, 727 insertions(+), 812 deletions(-)
Author: Jon T. Schnute
Diff between PBSmodelling versions 2.06 dated 2009-03-08 and 2.20 dated 2009-08-08
Title: PBS Modelling 2.11
Description: PBS Modelling provides software to facilitate the design,
testing, and operation of computer models. It focuses
particularly on tools that make it easy to construct and edit a
customized graphical user interface (GUI). Although it depends
heavily on the R interface to the Tcl/Tk package, a user does
not need to know Tcl/Tk. The package contains examples that
illustrate models built with other R packages, including
PBSmapping, deSolve, PBSddesolve, and BRugs. It also serves as
a convenient prototype for building new R packages, along with
instructions and batch files to facilitate that process. The R
directory '.../library/PBSmodelling/doc' includes a complete
user guide PBSmodelling-UG.pdf. To use this package
effectively, please consult the guide.
PBSmodelling-2.06/PBSmodelling/inst/PBStools/RmakePDF2.bat |only
PBSmodelling-2.06/PBSmodelling/inst/PBStools/RmakePDF3.bat |only
PBSmodelling-2.06/PBSmodelling/inst/examples/plotFuns.r |only
PBSmodelling-2.20/PBSmodelling/DESCRIPTION | 52
PBSmodelling-2.20/PBSmodelling/R/guiFuns.r | 1745 +++++++---
PBSmodelling-2.20/PBSmodelling/R/listFuns.r | 188 -
PBSmodelling-2.20/PBSmodelling/R/plotFuns.r | 84
PBSmodelling-2.20/PBSmodelling/R/projectFuns.r | 18
PBSmodelling-2.20/PBSmodelling/R/supportFuns.r | 257 +
PBSmodelling-2.20/PBSmodelling/R/widgetDefs.r | 243 +
PBSmodelling-2.20/PBSmodelling/R/zzz.r | 18
PBSmodelling-2.20/PBSmodelling/inst/PBStools/00ReadMe.txt | 6
PBSmodelling-2.20/PBSmodelling/inst/PBStools/RPaths.bat | 20
PBSmodelling-2.20/PBSmodelling/inst/PBStools/RmakePDF.bat | 23
PBSmodelling-2.20/PBSmodelling/inst/PBStools/RmakePDF_01.bat |only
PBSmodelling-2.20/PBSmodelling/inst/PBStools/RmakePDF_02.bat |only
PBSmodelling-2.20/PBSmodelling/inst/PBStools/RmakePDF_03.bat |only
PBSmodelling-2.20/PBSmodelling/inst/doc/ChangeLog.txt | 141
PBSmodelling-2.20/PBSmodelling/inst/doc/PBSmodelling-UG.pdf |binary
PBSmodelling-2.20/PBSmodelling/inst/doc/PBSmodelling-Updates.pdf |binary
PBSmodelling-2.20/PBSmodelling/inst/doc/PBSmodellingIntro.Rnw | 4
PBSmodelling-2.20/PBSmodelling/inst/doc/PBSmodellingIntro.pdf |binary
PBSmodelling-2.20/PBSmodelling/inst/testWidgets/droplist.txt |only
PBSmodelling-2.20/PBSmodelling/inst/testWidgets/object_scrolling.txt |only
PBSmodelling-2.20/PBSmodelling/inst/testWidgets/spinbox.txt |only
PBSmodelling-2.20/PBSmodelling/inst/testWidgets/table.txt |only
PBSmodelling-2.20/PBSmodelling/inst/testWidgets/testWidgetWin.txt | 16
PBSmodelling-2.20/PBSmodelling/inst/testWidgets/text.txt | 2
PBSmodelling-2.20/PBSmodelling/man/GT0.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/addArrows.Rd | 5
PBSmodelling-2.20/PBSmodelling/man/addLabel.Rd | 5
PBSmodelling-2.20/PBSmodelling/man/addLegend.Rd | 5
PBSmodelling-2.20/PBSmodelling/man/calcFib.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/calcGM.Rd | 14
PBSmodelling-2.20/PBSmodelling/man/calcMin.Rd | 6
PBSmodelling-2.20/PBSmodelling/man/chooseWinVal.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/cleanProj.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/cleanWD.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/clearAll.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/clearPBSext.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/clearRcon.Rd |only
PBSmodelling-2.20/PBSmodelling/man/clearWinVal.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/clipVector.Rd |only
PBSmodelling-2.20/PBSmodelling/man/closeWin.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/compileC.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/compileDescription.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/convSlashes.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/createVector.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/createWin.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/declareGUIoptions.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/doAction.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/drawBars.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/evalCall.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/expandGraph.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/exportHistory.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/findPat.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/findPrefix.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/focusWin.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/genMatrix.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/getChoice.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/getGUIoptions.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/getPBSext.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/getPBSoptions.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/getPrefix.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/getSuffix.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/getWinAct.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/getWinFun.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/getWinVal.Rd | 7
PBSmodelling-2.20/PBSmodelling/man/getYes.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/importHistory.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/initHistory.Rd | 8
PBSmodelling-2.20/PBSmodelling/man/isWhat.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/loadC.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/openExamples.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/openFile.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/openPackageFile.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/openProjFiles.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/packList.Rd | 10
PBSmodelling-2.20/PBSmodelling/man/pad0.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/parseWinFile.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/pause.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/pickCol.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/plotACF.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/plotAsp.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/plotBubbles.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/plotCsum.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/plotDens.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/plotFriedEggs.Rd | 17
PBSmodelling-2.20/PBSmodelling/man/plotTrace.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/presentTalk.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/promptOpenFile.Rd | 5
PBSmodelling-2.20/PBSmodelling/man/promptSaveFile.Rd | 5
PBSmodelling-2.20/PBSmodelling/man/promptWriteOptions.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/readList.Rd | 14
PBSmodelling-2.20/PBSmodelling/man/readPBSoptions.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/resetGraph.Rd | 22
PBSmodelling-2.20/PBSmodelling/man/restorePar.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/runDemos.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/runExamples.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/scalePar.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/setFileOption.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/setGUIoptions.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/setPBSext.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/setPBSoptions.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/setPathOption.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/setWidgetState.Rd |only
PBSmodelling-2.20/PBSmodelling/man/setWinAct.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/setWinVal.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/setwdGUI.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/show0.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/showAlert.rd | 3
PBSmodelling-2.20/PBSmodelling/man/showArgs.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/showHelp.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/showPacks.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/showRes.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/showVignettes.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/sortHistory.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/testAlpha.Rd | 4
PBSmodelling-2.20/PBSmodelling/man/testCol.Rd | 73
PBSmodelling-2.20/PBSmodelling/man/testLty.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/testLwd.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/testPch.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/testWidgets.Rd | 97
PBSmodelling-2.20/PBSmodelling/man/unpackList.Rd | 8
PBSmodelling-2.20/PBSmodelling/man/updateGUI.Rd |only
PBSmodelling-2.20/PBSmodelling/man/view.Rd | 3
PBSmodelling-2.20/PBSmodelling/man/viewCode.Rd | 14
PBSmodelling-2.20/PBSmodelling/man/writeList.Rd | 19
PBSmodelling-2.20/PBSmodelling/man/writePBSoptions.Rd | 3
PBSmodelling-2.20/PBSmodelling/src/parser.c | 39
130 files changed, 2635 insertions(+), 822 deletions(-)
Author: Bernhard Pfaff
Title: VAR Modelling
Description: Estimation, lag selection, diagnostic testing,
forecasting, causality analysis, forecast error variance
decomposition and impulse response functions of VAR models and
estimation of SVAR/SVEC models.
Diff between vars versions 1.4-5 dated 2009-05-04 and 1.4-6 dated 2009-08-07
DESCRIPTION | 10 R/predict.vec2var.R | 2 R/restrict.R | 4 inst/ChangeLog | 955 +++++++++++++++++++++++------------------------ inst/book-ex/Rcode-1-3.R | 3 inst/book-ex/ex2.tar.gz |binary inst/doc/vars.pdf |binary 7 files changed, 482 insertions(+), 492 deletions(-)
Author: Arne Henningsen and Jeff D. Hamann
Title: Estimating Systems of Simultaneous Equations
Description: This package contains functions for fitting simultaneous
systems of linear and nonlinear equations using Ordinary Least
Squares (OLS), Weighted Least Squares (WLS), Seemingly
Unrelated Regressions (SUR), Two-Stage Least Squares (2SLS),
Weighted Two-Stage Least Squares (W2SLS), and Three-Stage Least
Squares (3SLS).
Diff between systemfit versions 1.1-2 dated 2009-06-19 and 1.1-4 dated 2009-08-07
DESCRIPTION | 8 NEWS | 8 R/smallMethods.R | 2 inst/doc/systemfit.pdf | 585 ++++++++++++++++++++++++------------------------- 4 files changed, 305 insertions(+), 298 deletions(-)
Author: Walter R. Mebane, Jr.
Diff between rgenoud versions 5.5-1 dated 2009-03-13 and 5.6-5 dated 2009-08-07
Title: R version of GENetic Optimization Using Derivatives
Description: A genetic algorithm plus derivative optimizer
COPYING |only
COPYRIGHTS |only
ChangeLog |only
DESCRIPTION | 8
R/rgenoud.R | 814 ++++++++++++++++++++++++++++++++++++++++++++++++--
THANKS |only
inst |only
man/genoud.Rd | 103 ++++--
src/eval.cpp | 51 ++-
src/evaluate.cpp | 281 ++++++++++++-----
src/genoud.h | 10
src/operators.cpp | 6
src/print_format.cpp | 51 ++-
src/rgenoud.cpp | 16
tests/tests.Rout.save | 22 -
15 files changed, 1185 insertions(+), 177 deletions(-)
Author: Jonathan P. Weeks
Diff between plink versions 1.1-5 dated 2009-07-26 and 1.1-6 dated 2009-08-07
Title: IRT Separate Calibration Linking Methods
Description: This package uses item response theory methods to compute
linking constants and conduct chain linking of unidimensional
or multidimensional tests for multiple groups under a common
item design. The unidimensional methods include the Mean/Mean,
Mean/Sigma, Haebara, and Stocking-Lord methods for dichotomous
(1PL, 2PL and 3PL) and/or polytomous (graded response, partial
credit/generalized partial credit, nominal, and multiple-choice
model) items. The multidimensional methods include the
Reckase-Martineau method and extensions of the Haebara and
Stocking-Lord method using a single dilation parameter,
multiple dilation parameters, or the Oshima, Davey, & Lee
approach for multidimensional extensions of all the
unidimensional dichotomous and polytomous item response models.
The package also includes functions for importing item and/or
ability parameters from common IRT software and ploting item
characteristic/category curves or surfaces, vector plots, and
comparison plots for examining parameter drift.
DESCRIPTION | 8
NAMESPACE | 1
R/plink.R | 634 +++++++++++++++++++++++++++++++++++++++++----------
R/plot.R | 25 +-
R/weight.R | 1
inst/NEWS | 25 +-
man/plink-methods.Rd | 2
man/plot.irt.prob.Rd | 28 ++
8 files changed, 596 insertions(+), 128 deletions(-)
Author: Stefano Maria Iacus
Title: Simulation and Inference for Stochastic Differential Equations
Description: Companion package to the book Simulation and Inference for
Stochastic Differential Equations With R Examples, ISBN
978-0-387-75838-1, Springer, NY.
Diff between sde versions 2.0.9 dated 2009-07-31 and 2.0.10 dated 2009-08-06
DESCRIPTION | 10 +++++----- R/dcApprox.R | 2 +- inst/doc/changes.txt | 4 ++++ inst/doc/sde.errata.Rnw | 22 ++++++++++++++++++++++ inst/doc/sde.errata.pdf |binary 5 files changed, 32 insertions(+), 6 deletions(-)
Author: Carlos J. Gil Bellosta
Title: Read big text files column by column
Description: This package tries to solve the memory restrictions posed
by large text files by breaking them into its columns, which
are subsequently read individually into R.
Diff between colbycol versions 0.3 dated 2009-07-18 and 0.4 dated 2009-08-06
colbycol-0.3/colbycol/inst/python |only colbycol-0.4/colbycol/DESCRIPTION | 12 ++++----- colbycol-0.4/colbycol/NAMESPACE | 2 + colbycol-0.4/colbycol/R/cbc.read.table.R | 33 +++++++------------------- colbycol-0.4/colbycol/R/onLoad.R |only colbycol-0.4/colbycol/inst/java |only colbycol-0.4/colbycol/inst/java_src |only colbycol-0.4/colbycol/man/colbycol-package.Rd | 4 +-- 8 files changed, 19 insertions(+), 32 deletions(-)
Author: Josef Leydold and Wolfgang H\"ormann
Title: R interface to the UNU.RAN random variate generators
Description: Interface to the UNU.RAN library for Universal Non-Uniform
RANdom variate generators
Diff between Runuran versions 0.10.0 dated 2009-06-24 and 0.10.1 dated 2009-08-06
DESCRIPTION | 8 NEWS | 6 inst/doc/Runuran.pdf | 965 +++++++++++++++--------------- inst/doc/src/version.tex | 2 man/Runuran-package.Rd | 4 man/unuran.packed-methods.Rd | 6 src/unuran-src/distr/discr.c | 2 src/unuran-src/distributions/c_logistic.c | 1 src/unuran-src/methods/arou.c | 8 src/unuran-src/methods/hinv.c | 5 src/unuran-src/methods/itdr.c | 2 src/unuran-src/methods/pinv_prep.ch | 2 src/unuran-src/methods/pinv_sample.ch | 5 src/unuran-src/tests/inverror.c | 2 src/unuran-src/utils/lobatto.c | 12 src/unuran-src/utils/stream.c | 5 tests/test_packed.R | 6 17 files changed, 530 insertions(+), 511 deletions(-)
Author: Yu-Sung Su
Diff between R2jags versions 0.01-23 dated 2009-05-04 and 0.01-24 dated 2009-08-06
Title: A Package for Running jags from R
Description: Using this package to call jags from R.
CHANGELOG | 5 +++++
DESCRIPTION | 8 ++++----
R/as.bugs.array2.R | 2 +-
R/jags.R | 2 +-
R/jags.sims.R | 2 +-
man/jags.Rd | 4 ++--
6 files changed, 14 insertions(+), 9 deletions(-)
Author: Nicholas L. Crookston
Diff between yaImpute versions 1.0-9 dated 2009-04-19 and 1.0-10 dated 2009-08-06
Title: yaImpute: An R Package for k-NN Imputation
Description: Performs popular nearest neighbor routines for imputation
DESCRIPTION | 10
R/asciigridimpute.R | 13 -
R/findFactors.R | 10
R/impute.R | 602 +++++++++++++++++++++++--------------------------
R/newtargets.R | 4
man/asciigridimpute.Rd | 16 -
man/newtargets.Rd | 2
7 files changed, 327 insertions(+), 330 deletions(-)
Author: Han Lin Shang and Rob J Hyndman
Title: Rainbow plots, bagplots and boxplots for functional data
Description: Functions and datasets for functional data display and
outlier detection.
Diff between rainbow versions 1.2 dated 2009-07-28 and 1.3 dated 2009-08-06
rainbow-1.2/rainbow/.fsLockFile |only rainbow-1.2/rainbow/R/fd.R |only rainbow-1.2/rainbow/R/lines.fd.r |only rainbow-1.2/rainbow/R/plot.fd.R |only rainbow-1.2/rainbow/R/points.fd.r |only rainbow-1.2/rainbow/R/print.fd.R |only rainbow-1.2/rainbow/man/fd.Rd |only rainbow-1.2/rainbow/man/plot.fd.Rd |only rainbow-1.3/rainbow/CHANGELOG |only rainbow-1.3/rainbow/DESCRIPTION | 10 +++---- rainbow-1.3/rainbow/NAMESPACE | 23 ++++++++++++------ rainbow-1.3/rainbow/R/fds.R |only rainbow-1.3/rainbow/R/fts.R | 2 - rainbow-1.3/rainbow/R/lines.fds.r |only rainbow-1.3/rainbow/R/lines.sfts.R |only rainbow-1.3/rainbow/R/plot.fdepth.R | 5 ++- rainbow-1.3/rainbow/R/plot.fds.R |only rainbow-1.3/rainbow/R/plot.sfts.R |only rainbow-1.3/rainbow/R/points.fds.r |only rainbow-1.3/rainbow/R/points.sfts.r |only rainbow-1.3/rainbow/R/print.fds.R |only rainbow-1.3/rainbow/R/print.fts.R | 11 ++++++-- rainbow-1.3/rainbow/R/print.sfts.r |only rainbow-1.3/rainbow/R/sfts.R |only rainbow-1.3/rainbow/data/Australiafertility.rda |binary rainbow-1.3/rainbow/data/Australiasmoothfertility.rda |binary rainbow-1.3/rainbow/data/ElNino.rda |binary rainbow-1.3/rainbow/data/Francemortality.rda |binary rainbow-1.3/rainbow/data/Francesmoothmortality.rda |binary rainbow-1.3/rainbow/data/Simulationdata.rda |binary rainbow-1.3/rainbow/man/Australiafertility.Rd | 4 ++- rainbow-1.3/rainbow/man/ElNino.Rd | 20 ++++++++++----- rainbow-1.3/rainbow/man/Francemortality.Rd | 6 +++- rainbow-1.3/rainbow/man/Simulationdata.Rd | 6 ++-- rainbow-1.3/rainbow/man/fboxplot.Rd | 10 ++++--- rainbow-1.3/rainbow/man/fdepth.Rd | 4 +-- rainbow-1.3/rainbow/man/fds.Rd |only rainbow-1.3/rainbow/man/foutliers.Rd | 4 ++- rainbow-1.3/rainbow/man/lines.fds.Rd |only rainbow-1.3/rainbow/man/lines.sfts.Rd |only rainbow-1.3/rainbow/man/plot.fds.Rd |only rainbow-1.3/rainbow/man/plot.sfts.Rd |only rainbow-1.3/rainbow/man/points.fds.Rd |only rainbow-1.3/rainbow/man/points.sfts.Rd |only rainbow-1.3/rainbow/man/rainbow-package.Rd | 6 ++-- rainbow-1.3/rainbow/man/sfts.Rd |only 46 files changed, 70 insertions(+), 41 deletions(-)
Author: Jelle Goeman
Diff between penalized versions 0.9-25 dated 2009-07-18 and 0.9-26 dated 2009-08-06
Title: L1 (lasso) and L2 (ridge) penalized estimation in GLMs and in
the Cox model
Description: A package for fitting possibly high dimensional penalized
regression models. The penalty structure can be any combination
of an L1 penalty (lasso), an L2 penalty (ridge) and a
positivity constraint on the regression coefficients. The
supported regression models are linear, logistic and poisson
regression and the Cox Proportional Hazards model.
Cross-validation routines allow optimization of the tuning
parameters.
DESCRIPTION | 8
R/core.R | 6
R/cvl.R | 35
changelog.txt | 3
inst/doc/Rplots.pdf |14020 ++++++++++++++++++++++++-------------------------
inst/doc/penalized.pdf |binary
6 files changed, 7005 insertions(+), 7067 deletions(-)
Author: Yue Fan, Thomas Brendan Murphy, R. William G. Watson
Title: GUI tool for analyzing 2D DIGE data
Description: An easy to use Graphical User Interfact for spots
correlation analysis, score plot, classification, feature
selection and power analysis for 2D DIGE experiment data.
Diff between digeR versions 1.0 dated 2009-06-24 and 1.1 dated 2009-08-06
digeR-1.0/digeR/inst/digeR_Manual.pdf |only digeR-1.1/digeR/DESCRIPTION | 8 digeR-1.1/digeR/R/digeR.R | 66 ++- digeR-1.1/digeR/inst/Manual_for_digeR_v1.1.pdf |only digeR-1.1/digeR/inst/digeR.pdf | 440 ++++++++++++------------- digeR-1.1/digeR/man/digeR-package.Rd | 4 digeR-1.1/digeR/man/digeR.Rd | 10 7 files changed, 271 insertions(+), 257 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Mariano Devoto, Jochen Fruend, Jose Iriondo and Diego Vazquez,
also based on C-code developed by Nils Bluethgen and by Miguel
Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 0.94 dated 2009-08-01 and 1.00 dated 2009-08-06
DESCRIPTION | 8 R/C.score.R | 13 + R/H2fun.R | 46 +++-- R/PAC.r |only R/degreedistr.R | 12 - R/dfun.R | 1 R/networklevel.R | 406 ++++++++++++++++++++++++----------------------- R/specieslevel.R | 148 +++++++++++------ Wishlist.txt | 14 + man/PAC.rd |only man/bipartite-package.Rd | 23 ++ man/degreedistr.Rd | 5 man/networklevel.Rd | 85 +++++---- man/specieslevel.Rd | 44 ++--- 14 files changed, 474 insertions(+), 331 deletions(-)
Author: Alexis Gabadinho
Diff between TraMineR versions 1.2-1 dated 2009-05-13 and 1.4 dated 2009-08-06
Title: Sequences and trajectories mining for social scientists
Description: This package is a toolbox for sequence manipulation,
description, rendering and more generally sequence data mining
in the field of social sciences. Though it is primarily
intended for analyzing state or event sequences that describe
life courses such as family formation histories or professional
careers its features apply indeed also to many other kinds of
categorical sequence data. It accepts as input many different
sequence representations and provides tools for translating
sequences from one format to another. It offers several
statistical functions for describing and rendering sequences,
for computing distances between sequences with different
metrics among which optimal matching, the longest common prefix
and the longest common subsequence, and simple functions for
extracting the most frequent subsequences and identifying the
most discriminating ones among them. A user's guide can be
found on TraMineR's web page.
TraMineR-1.2-1/TraMineR/R/TraMineR-dplot.R |only
TraMineR-1.2-1/TraMineR/R/TraMineR-fplot.R |only
TraMineR-1.2-1/TraMineR/R/TraMineR-iplot.R |only
TraMineR-1.2-1/TraMineR/R/TraMineR-mtplot.R |only
TraMineR-1.2-1/TraMineR/demo/Describing_visualizing.R |only
TraMineR-1.2-1/TraMineR/demo/Event_sequences.R |only
TraMineR-1.2-1/TraMineR/demo/Similarities.R |only
TraMineR-1.2-1/TraMineR/inst/doc |only
TraMineR-1.2-1/TraMineR/man/seqdplot.Rd |only
TraMineR-1.2-1/TraMineR/man/seqfplot.Rd |only
TraMineR-1.2-1/TraMineR/man/seqiplot.Rd |only
TraMineR-1.2-1/TraMineR/man/seqmtplot.Rd |only
TraMineR-1.4/TraMineR/DESCRIPTION | 8
TraMineR-1.4/TraMineR/NAMESPACE | 36 +
TraMineR-1.4/TraMineR/NEWS | 86 +++
TraMineR-1.4/TraMineR/R/BIOSPELL_to_STS.R | 57 +-
TraMineR-1.4/TraMineR/R/DHDdist.R |only
TraMineR-1.4/TraMineR/R/LCSdist.R | 4
TraMineR-1.4/TraMineR/R/TSE_to_STS.R |only
TraMineR-1.4/TraMineR/R/TraMineR-seqdist.R |only
TraMineR-1.4/TraMineR/R/TraMineR-trunc.R | 3
TraMineR-1.4/TraMineR/R/TraMineR.checkupdates.R |only
TraMineR-1.4/TraMineR/R/alphabet-set.R | 5
TraMineR-1.4/TraMineR/R/debuglevel.R |only
TraMineR-1.4/TraMineR/R/disscenter.R | 3
TraMineR-1.4/TraMineR/R/disstree.r | 8
TraMineR-1.4/TraMineR/R/disstree2dot.R | 4
TraMineR-1.4/TraMineR/R/plot.stslist.R | 174 ++-----
TraMineR-1.4/TraMineR/R/plot.stslist.freq.R |only
TraMineR-1.4/TraMineR/R/plot.stslist.meant.R |only
TraMineR-1.4/TraMineR/R/plot.stslist.modst.R |only
TraMineR-1.4/TraMineR/R/plot.stslist.rep.R |only
TraMineR-1.4/TraMineR/R/plot.stslist.statd.R |only
TraMineR-1.4/TraMineR/R/seqHtplot.R |only
TraMineR-1.4/TraMineR/R/seqdecomp.R | 2
TraMineR-1.4/TraMineR/R/seqdef.R | 160 ++++---
TraMineR-1.4/TraMineR/R/seqdist.R | 404 ++++++++----------
TraMineR-1.4/TraMineR/R/seqdistmc.R |only
TraMineR-1.4/TraMineR/R/seqdplot.R | 2
TraMineR-1.4/TraMineR/R/seqdss.R | 5
TraMineR-1.4/TraMineR/R/seqeapplysub.R | 10
TraMineR-1.4/TraMineR/R/seqecmpgroup.R | 97 ++--
TraMineR-1.4/TraMineR/R/seqeconstraint.R | 9
TraMineR-1.4/TraMineR/R/seqecreate.R | 3
TraMineR-1.4/TraMineR/R/seqefsub.R | 4
TraMineR-1.4/TraMineR/R/seqerules.R |only
TraMineR-1.4/TraMineR/R/seqetm.R | 72 +--
TraMineR-1.4/TraMineR/R/seqformat.R | 21
TraMineR-1.4/TraMineR/R/seqfplot.R | 4
TraMineR-1.4/TraMineR/R/seqiplot.R | 4
TraMineR-1.4/TraMineR/R/seqlegend.R | 6
TraMineR-1.4/TraMineR/R/seqlogp.R | 146 ++++--
TraMineR-1.4/TraMineR/R/seqmeant.R |only
TraMineR-1.4/TraMineR/R/seqmodst.R |only
TraMineR-1.4/TraMineR/R/seqmsplot.R |only
TraMineR-1.4/TraMineR/R/seqmtplot.R | 2
TraMineR-1.4/TraMineR/R/seqplot.R |only
TraMineR-1.4/TraMineR/R/seqrep.R |only
TraMineR-1.4/TraMineR/R/seqrplot.R |only
TraMineR-1.4/TraMineR/R/seqstatd.R | 43 +
TraMineR-1.4/TraMineR/R/seqstatf.R |only
TraMineR-1.4/TraMineR/R/seqsubm.R | 105 +++-
TraMineR-1.4/TraMineR/R/seqtab.R | 49 +-
TraMineR-1.4/TraMineR/R/seqtrate.R | 85 ++-
TraMineR-1.4/TraMineR/R/stslist-methods.R | 16
TraMineR-1.4/TraMineR/R/stslist.freq-methods.R |only
TraMineR-1.4/TraMineR/R/stslist.meant-methods.R |only
TraMineR-1.4/TraMineR/R/stslist.modst-methods.R |only
TraMineR-1.4/TraMineR/R/stslist.rep-methods.R |only
TraMineR-1.4/TraMineR/R/stslist.statd-methods.R |only
TraMineR-1.4/TraMineR/data/biofam.RData |binary
TraMineR-1.4/TraMineR/data/ex1.RData |only
TraMineR-1.4/TraMineR/data/famform.R | 8
TraMineR-1.4/TraMineR/demo/00Index | 6
TraMineR-1.4/TraMineR/demo/Events.R |only
TraMineR-1.4/TraMineR/demo/Rendering.R |only
TraMineR-1.4/TraMineR/demo/Seqdist.R |only
TraMineR-1.4/TraMineR/inst/CITATION | 4
TraMineR-1.4/TraMineR/man/TraMineR.checkupdates.Rd |only
TraMineR-1.4/TraMineR/man/biofam.Rd | 9
TraMineR-1.4/TraMineR/man/dissassoc.Rd | 52 +-
TraMineR-1.4/TraMineR/man/disscenter.Rd | 77 +--
TraMineR-1.4/TraMineR/man/dissmfac.Rd | 27 -
TraMineR-1.4/TraMineR/man/disstree.Rd | 37 -
TraMineR-1.4/TraMineR/man/dissvar.Rd | 50 +-
TraMineR-1.4/TraMineR/man/ex1.Rd |only
TraMineR-1.4/TraMineR/man/plot.stslist.Rd | 149 ++----
TraMineR-1.4/TraMineR/man/plot.stslist.freq.Rd |only
TraMineR-1.4/TraMineR/man/plot.stslist.meant.Rd |only
TraMineR-1.4/TraMineR/man/plot.stslist.modst.Rd |only
TraMineR-1.4/TraMineR/man/plot.stslist.rep.Rd |only
TraMineR-1.4/TraMineR/man/plot.stslist.statd.Rd |only
TraMineR-1.4/TraMineR/man/seqST.Rd | 2
TraMineR-1.4/TraMineR/man/seqdef.Rd | 69 ++-
TraMineR-1.4/TraMineR/man/seqdiff.Rd | 13
TraMineR-1.4/TraMineR/man/seqdist.Rd | 51 +-
TraMineR-1.4/TraMineR/man/seqdistmc.Rd |only
TraMineR-1.4/TraMineR/man/seqeapplysub.Rd | 5
TraMineR-1.4/TraMineR/man/seqeconstraint.Rd | 3
TraMineR-1.4/TraMineR/man/seqefsub.Rd | 4
TraMineR-1.4/TraMineR/man/seqfcheck.Rd | 2
TraMineR-1.4/TraMineR/man/seqformat.Rd | 15
TraMineR-1.4/TraMineR/man/seqfpos.Rd | 4
TraMineR-1.4/TraMineR/man/seqlegend.Rd | 6
TraMineR-1.4/TraMineR/man/seqlogp.Rd |only
TraMineR-1.4/TraMineR/man/seqmeant.Rd |only
TraMineR-1.4/TraMineR/man/seqmodst.Rd |only
TraMineR-1.4/TraMineR/man/seqplot.Rd |only
TraMineR-1.4/TraMineR/man/seqrep.Rd |only
TraMineR-1.4/TraMineR/man/seqsep.Rd | 4
TraMineR-1.4/TraMineR/man/seqstatd.Rd | 102 ++--
TraMineR-1.4/TraMineR/man/seqstatf.Rd |only
TraMineR-1.4/TraMineR/man/seqsubm.Rd | 22
TraMineR-1.4/TraMineR/man/seqtab.Rd | 70 ++-
TraMineR-1.4/TraMineR/man/seqtrate.Rd | 15
TraMineR-1.4/TraMineR/src/TraMineR.h |only
TraMineR-1.4/TraMineR/src/alignement.cpp | 14
TraMineR-1.4/TraMineR/src/alignement.h | 8
TraMineR-1.4/TraMineR/src/constraint.cpp |only
TraMineR-1.4/TraMineR/src/constraint.h |only
TraMineR-1.4/TraMineR/src/dist2matrix.c | 5
TraMineR-1.4/TraMineR/src/distancefunctions.cpp | 225 +++++-----
TraMineR-1.4/TraMineR/src/inertiafunctions.c | 37 -
TraMineR-1.4/TraMineR/src/prefixtree.cpp | 17
TraMineR-1.4/TraMineR/src/prefixtree.h | 6
TraMineR-1.4/TraMineR/src/saltt.cpp | 19
TraMineR-1.4/TraMineR/src/salttseq.cpp | 47 +-
TraMineR-1.4/TraMineR/src/salttseq.h | 6
TraMineR-1.4/TraMineR/src/tmrsequence.cpp | 39 +
TraMineR-1.4/TraMineR/src/traminerdebug.cpp |only
TraMineR-1.4/TraMineR/src/treeeventnode.cpp | 27 -
TraMineR-1.4/TraMineR/src/treeeventnode.h | 12
132 files changed, 1717 insertions(+), 1188 deletions(-)
Author: Terry M Therneau and Beth Atkinson
Diff between rpart versions 3.1-44 dated 2009-05-24 and 3.1-45 dated 2009-08-05
Title: Recursive Partitioning
Description: Recursive partitioning and regression trees
ChangeLog | 2 ++
DESCRIPTION | 8 ++++----
man/path.rpart.Rd | 12 ++++++------
man/snip.rpart.Rd | 2 +-
tests/Examples |only
5 files changed, 13 insertions(+), 11 deletions(-)
Author: Tarn Duong
Diff between ks versions 1.6.5 dated 2009-06-24 and 1.6.6 dated 2009-08-05
Title: Kernel smoothing
Description: Kernel density estimators and kernel discriminant analysis
for multivariate data
DESCRIPTION | 10 +--
NAMESPACE | 2
R/deconv-kde.R |only
R/mise.R | 169 +++++++++++++++++++++++++++++++++--------------------
R/normal.R | 81 ++++++++++++++++---------
README | 27 +++++---
inst/doc/kde.pdf |binary
man/Hamise.mixt.Rd | 6 +
8 files changed, 188 insertions(+), 107 deletions(-)
Author: S original
Diff between boot versions 1.2-37 dated 2009-06-16 and 1.2-38 dated 2009-08-05
Title: Bootstrap R (S-Plus) Functions (Canty)
Description: functions and datasets for bootstrapping from the book
"Bootstrap Methods and Their Applications" by A. C. Davison and
D. V. Hinkley (1997, CUP).
ChangeLog | 4 ++++
DESCRIPTION | 10 +++++-----
man/boot-practicals.Rd | 2 +-
man/censboot.Rd | 4 ++--
man/linear.approx.Rd | 2 +-
man/nitrofen.Rd | 2 +-
tests |only
7 files changed, 14 insertions(+), 10 deletions(-)
Author: S original by Venables & Ripley. R port by Brian Ripley
Diff between VR versions 7.2-47 dated 2009-05-12 and 7.2-48 dated 2009-08-05
Bundle: VR
Contains: MASS class nnet spatial
DESCRIPTION | 8 ++++----
MASS/INDEX | 2 +-
MASS/R/gamma.shape.R | 6 +++---
MASS/R/neg.bin.R | 3 ++-
MASS/R/negbin.R | 1 +
MASS/inst/NEWS | 2 ++
MASS/inst/scripts/ch08.R | 22 +++++++++++-----------
MASS/inst/scripts/ch11.R | 9 ++++++---
MASS/inst/scripts/ch13.R | 2 +-
MASS/man/Pima.tr.Rd | 2 +-
MASS/man/boxcox.Rd | 2 +-
MASS/man/contr.sdif.Rd | 41 ++++++++++++++++++++++-------------------
MASS/man/denumerate.Rd | 2 +-
MASS/man/fractions.Rd | 22 +---------------------
MASS/man/gamma.shape.glm.Rd | 15 +--------------
MASS/man/genotype.Rd | 2 +-
MASS/man/newcomb.Rd | 2 +-
MASS/man/rational.Rd | 17 ++---------------
MASS/man/stepAIC.Rd | 2 +-
WHATS.NEW | 4 ++++
nnet/R/multinom.R | 4 +++-
nnet/R/nnet.R | 2 ++
nnet/inst/NEWS | 4 +++-
23 files changed, 75 insertions(+), 101 deletions(-)
Author: Gregory R. Warnes and Gregor Gorjanc. Includes R source code
and/or documentation contributed by Ben Bolker and Thomas
Lumley.
Title: Various R programming tools for data manipulation
Description: Various R programming tools for data manipulation
Diff between gdata versions 2.4.2 dated 2008-05-13 and 2.6.0 dated 2009-08-05
gdata-2.4.2/gdata/tests/doRUnit.R |only gdata-2.6.0/gdata/ChangeLog | 780 +++++++------- gdata-2.6.0/gdata/DESCRIPTION | 15 gdata-2.6.0/gdata/NAMESPACE | 53 gdata-2.6.0/gdata/NEWS | 74 + gdata-2.6.0/gdata/R/bindData.R |only gdata-2.6.0/gdata/R/cbindX.R |only gdata-2.6.0/gdata/R/env.R | 8 gdata-2.6.0/gdata/R/getDateTimeParts.R |only gdata-2.6.0/gdata/R/ll.R | 8 gdata-2.6.0/gdata/R/nPairs.R |only gdata-2.6.0/gdata/R/object.size.R |only gdata-2.6.0/gdata/R/read.xls.R | 254 ++-- gdata-2.6.0/gdata/R/runRUnitTests.R |only gdata-2.6.0/gdata/R/trimSum.R |only gdata-2.6.0/gdata/R/wideByFactor.R |only gdata-2.6.0/gdata/R/write.fwf.R | 164 ++ gdata-2.6.0/gdata/inst/ChangeLog | 780 +++++++------- gdata-2.6.0/gdata/inst/NEWS | 74 + gdata-2.6.0/gdata/inst/doc/gregmisc.tex | 4 gdata-2.6.0/gdata/inst/doc/mapLevels.pdf |binary gdata-2.6.0/gdata/inst/doc/unknown.pdf |binary gdata-2.6.0/gdata/inst/perl/xls2tab.pl |only gdata-2.6.0/gdata/inst/unitTests/Makefile | 12 gdata-2.6.0/gdata/inst/unitTests/runRUnitTests.R |only gdata-2.6.0/gdata/inst/unitTests/runit.bindData.R |only gdata-2.6.0/gdata/inst/unitTests/runit.cbindX.R |only gdata-2.6.0/gdata/inst/unitTests/runit.getDateTimeParts.R |only gdata-2.6.0/gdata/inst/unitTests/runit.nPairs.R |only gdata-2.6.0/gdata/inst/unitTests/runit.trimSum.R |only gdata-2.6.0/gdata/inst/unitTests/runit.wideByFactor.R |only gdata-2.6.0/gdata/inst/unitTests/runit.write.fwf.R | 64 - gdata-2.6.0/gdata/man/ConvertMedUnits.Rd | 2 gdata-2.6.0/gdata/man/aggregate.table.Rd | 4 gdata-2.6.0/gdata/man/bindData.Rd |only gdata-2.6.0/gdata/man/cbindX.Rd |only gdata-2.6.0/gdata/man/combine.Rd | 4 gdata-2.6.0/gdata/man/env.Rd | 2 gdata-2.6.0/gdata/man/frameApply.Rd | 4 gdata-2.6.0/gdata/man/gdata-package.Rd | 9 gdata-2.6.0/gdata/man/getDateTimePart.Rd |only gdata-2.6.0/gdata/man/humanReadable.Rd |only gdata-2.6.0/gdata/man/interleave.Rd | 4 gdata-2.6.0/gdata/man/ll.Rd | 7 gdata-2.6.0/gdata/man/matchcols.Rd | 2 gdata-2.6.0/gdata/man/nPairs.Rd |only gdata-2.6.0/gdata/man/nobs.Rd | 4 gdata-2.6.0/gdata/man/object.size.Rd |only gdata-2.6.0/gdata/man/read.xls.Rd | 51 gdata-2.6.0/gdata/man/rename.vars.Rd | 4 gdata-2.6.0/gdata/man/reorder.Rd | 4 gdata-2.6.0/gdata/man/resample.Rd | 41 gdata-2.6.0/gdata/man/runRUnitTests.Rd |only gdata-2.6.0/gdata/man/trim.Rd | 2 gdata-2.6.0/gdata/man/trimSum.Rd |only gdata-2.6.0/gdata/man/unmatrix.Rd | 2 gdata-2.6.0/gdata/man/upperTriangle.Rd | 4 gdata-2.6.0/gdata/man/wideByFactor.Rd |only gdata-2.6.0/gdata/man/write.fwf.Rd | 114 +- gdata-2.6.0/gdata/tests/tests.write.fwf.R | 40 gdata-2.6.0/gdata/tests/tests.write.fwf.Rout.save | 290 ++--- 61 files changed, 1745 insertions(+), 1139 deletions(-)
Author: Antonio Gasparrini and Ben Armstrong
Title: Distributed Lag Non-linear Models
Description: The package dlnm contains functions to specify basis and
cross-basis matrices in order to run distributed lag models and
their non-linear extension, then to predict and graph the
results for a fitted model.
Diff between dlnm versions 0.4.0 dated 2009-08-04 and 0.4.1 dated 2009-08-04
DESCRIPTION | 8 inst/dlnmChangeLog | 2 inst/doc/Rplots.pdf | 4 inst/doc/dlnmOverview.Rnw | 2 inst/doc/dlnmOverview.pdf | 1224 ++++++++++++++++++++++------------------------ man/crossbasis.Rd | 4 6 files changed, 620 insertions(+), 624 deletions(-)
Author: Duncan Temple Lang (duncan@wald.ucdavis.edu)
Title: Tools for parsing and generating XML within R and S-Plus.
Description: This package provides many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP. It also offers access to an
XPath "interpreter".
Diff between XML versions 2.5-3 dated 2009-06-25 and 2.6-0 dated 2009-08-04
Changes | 20 DESCRIPTION | 15 INSTALL | 2 NAMESPACE | 13 R/XMLClasses.R | 9 R/bitList.R |only R/htmlParse.R | 16 R/nodeAccessors.R | 17 R/readHTMLTable.R | 7 R/reflection.R |only R/saveXML.R | 15 R/toString.S | 3 R/xmlNodes.R | 6 R/xmlToDataFrame.R |only R/zzz.R | 1 configure | 5289 ++++++++++++++++++----------------------- inst/exampleData/size.xml |only inst/exampleData/xinclude/.svn |only man/XMLCodeFile-class.Rd | 3 man/XMLNode-class.Rd | 9 man/makeClassTemplate.Rd |only man/parseURI.Rd | 9 man/readHTMLTable.Rd | 3 man/saveXML.Rd | 1 man/xmlToDataFrame.Rd |only man/xmlToS4.Rd |only src/HTMLParse.c | 50 src/RUtils.c | 1 src/Utils.h | 2 src/XMLTree.c | 9 30 files changed, 2570 insertions(+), 2930 deletions(-)
Author: Andreas Ruckstuhl, Thomas Unternaehrer, Rene Locher
Title: Utilities of Institute of Data Analyses and Process Design
(www.idp.zhaw.ch)
Description: The IDPmisc package contains different high-level graphics
functions for displaying large datasets, displaying circular
data in a very flexible way, finding local maxima, brewing
color ramps, drawing nice arrows, zooming 2D-plots, creating
figures with differently colored margin and plot region. In
addition, the package contains auxiliary functions for data
manipulation like omitting observations with irregular values
or selecting data by logical vectors, which include NAs. Other
functions are especially useful in spectroscopy and analyses of
environmental data: robust baseline fitting, finding peaks in
spectra.
Diff between IDPmisc versions 1.1.02 dated 2009-08-04 and 1.1.03 dated 2009-08-04
IDPmisc-1.1.02/IDPmisc/R/drawleg.R |only IDPmisc-1.1.03/IDPmisc/ChangeLog | 10 ++++++ IDPmisc-1.1.03/IDPmisc/DESCRIPTION | 6 ++-- IDPmisc-1.1.03/IDPmisc/R/draw.leg.R | 39 +++++++++++++++++++++----- IDPmisc-1.1.03/IDPmisc/R/itermplot.R | 10 +++--- IDPmisc-1.1.03/IDPmisc/R/plot.onepage.R | 28 +++++++++--------- IDPmisc-1.1.03/IDPmisc/R/plot.rose.R | 2 - IDPmisc-1.1.03/IDPmisc/man/IDPmisc-package.Rd | 4 +- IDPmisc-1.1.03/IDPmisc/man/Image.Rd | 18 ++++++------ IDPmisc-1.1.03/IDPmisc/man/iplot.Rd | 14 ++++----- IDPmisc-1.1.03/IDPmisc/man/itermplot.Rd | 30 ++++++++++---------- IDPmisc-1.1.03/IDPmisc/man/peaks.Rd | 4 +- IDPmisc-1.1.03/IDPmisc/man/rfbaseline.Rd | 22 +++++++------- IDPmisc-1.1.03/IDPmisc/man/zoom.Rd | 2 - 14 files changed, 111 insertions(+), 78 deletions(-)
Author: Frank E Harrell Jr
Diff between Hmisc versions 3.6-0 dated 2009-04-29 and 3.6-1 dated 2009-08-04
Title: Harrell Miscellaneous
Description: The Hmisc library contains many functions useful for data
analysis, high-level graphics, utility operations, functions
for computing sample size and power, importing datasets,
imputing missing values, advanced table making, variable
clustering, character string manipulation, conversion of S
objects to LaTeX code, and recoding variables. Please submit
bug reports to 'http://biostat.mc.vanderbilt.edu/trac/Hmisc'.
DESCRIPTION | 8 ++++----
R/xtfrm.labelled.s |only
man/escapeRegex.Rd | 2 +-
man/latex.Rd | 26 +++++++++++++-------------
man/ps.slide.Rd | 6 +++---
man/stata.get.Rd | 2 +-
man/xtfrm.labelled.Rd |only
7 files changed, 22 insertions(+), 22 deletions(-)
Author: NCAR - Research Application Program
Title: Forecast verification utilities.
Description: This package contains utilities for verification of
discrete,continuous, probabilistic forecasts and forecast
expressed as parametric distributions.
Diff between verification versions 1.29 dated 2009-01-04 and 1.30 dated 2009-08-04
ChangeLog | 10 ++++++++++ DESCRIPTION | 28 ++++++++++++++++------------ R/attribute.default.R | 8 ++++---- R/attribute.prob.bin.R | 3 ++- R/brier.r | 30 ++++++++++++++++++++++++++---- R/crpsDecomposition.r |only R/crpsFromAlphaBeta.R |only R/fss.R |only R/performance.diagram.R |only R/rcrv.r |only R/roc.plot.default.r | 3 ++- R/table.stats.R | 16 +++++++++++++--- R/table.stats.boot.R |only inst/doc/verification.pdf |binary man/attribute.Rd | 5 +++-- man/crpsDecompostion.Rd |only man/fss.Rd |only man/lines.verify.Rd | 4 ---- man/multi.cont.Rd | 6 ++++-- man/performance.diagram.Rd |only man/rcrv.Rd |only man/roc.plot.Rd | 4 ++-- man/table.stats.Rd |only man/table.stats.boot.Rd |only man/verify-internal.Rd | 5 ++--- 25 files changed, 84 insertions(+), 38 deletions(-)
Author: David Meyer and Kurt Hornik (with contributions by Christian
Buchta)
Title: Sets, Generalized Sets, and Customizable Sets
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and fuzzy
multisets, and customizable sets.
Diff between sets versions 0.7 dated 2009-05-24 and 1.0 dated 2009-08-04
sets-0.7/sets/paper |only sets-1.0/sets/DESCRIPTION | 11 sets-1.0/sets/NAMESPACE | 6 sets-1.0/sets/R/extractors.R | 72 - sets-1.0/sets/R/fuzzyfuns.R | 40 sets-1.0/sets/R/set.R | 5 sets-1.0/sets/R/union.R | 10 sets-1.0/sets/inst/CITATION |only sets-1.0/sets/inst/doc/sets.Rnw | 1288 +++++++++++++++++++--------- sets-1.0/sets/inst/doc/sets.bib |only sets-1.0/sets/inst/doc/sets.pdf |binary sets-1.0/sets/man/canonicalizeSetMapping.Rd | 2 sets-1.0/sets/man/cset.Rd | 11 sets-1.0/sets/man/fuzzy.Rd | 5 sets-1.0/sets/man/fuzzydocs.Rd | 4 sets-1.0/sets/man/fuzzyfuns.Rd | 33 sets-1.0/sets/man/fuzzyinference.Rd | 2 sets-1.0/sets/man/gset.Rd | 20 sets-1.0/sets/man/outer.Rd | 2 sets-1.0/sets/man/plot.Rd | 2 sets-1.0/sets/man/set.Rd | 8 21 files changed, 1030 insertions(+), 491 deletions(-)
Author: Daniel P Gaile
Diff between sendplot versions 3.7.0 dated 2009-04-04 and 3.8.0 dated 2009-08-04
Title: Tool for sending interactive plots with tool-tip content.
Description: A tool for visualizing data
DESCRIPTION | 8 ++++----
NAMESPACE |only
inst/doc/sendplot.Rnw |only
inst/doc/sendplot.dvi |only
inst/doc/sendplot.pdf |binary
man/makeSplot.Rd | 4 ++--
6 files changed, 6 insertions(+), 6 deletions(-)
Author: Roger Koenker
Diff between quantreg versions 4.36 dated 2009-07-18 and 4.38 dated 2009-08-04
Title: Quantile Regression
Description: Quantile regression and related methods.
DESCRIPTION | 8 ++++----
R/crq.R | 4 ++--
R/quantreg.R | 15 ++++++++-------
R/rqss.R | 18 ++++++++++++------
inst/ChangeLog | 16 ++++++++++++++++
inst/doc/Rplots.pdf | 4 ++--
inst/doc/rq.pdf |binary
man/nlrq.Rd | 2 +-
man/rqss.object.Rd | 1 +
9 files changed, 46 insertions(+), 22 deletions(-)
Author: Vahid PARTOVI NIA, Anthony Davison, and Arpit Chaudhary
Title: Convert labels or tables to a dendrogram
Description: The package offers a dendrogram representation of series
of labels, this is specially needed in Markov chain Monte Carlo
clustering. If you have a dendrogram in your mind you can
easily put series of meaningful labels in a matrix and heights
in a vector, then convert them to a dendrogram abject.
Diff between labeltodendro versions 1.0.0 dated 2009-02-25 and 1.1 dated 2009-08-04
DESCRIPTION | 23 +++++++++++++++-------- man/tabletodendro.Rd | 2 +- 2 files changed, 16 insertions(+), 9 deletions(-)
Author: Antonio Gasparrini and Ben Armstrong
Title: Distributed Lag Non-linear Models
Description: The package dlnm contains functions to specify basis and
cross-basis matrices in order to run distributed lag models and
their non-linear extension, then to predict and graph the
results for a fitted model.
Diff between dlnm versions 0.3.0 dated 2009-07-30 and 0.4.0 dated 2009-08-04
DESCRIPTION | 8 R/crossbasis.R | 17 R/crossplot.R | 4 R/crosspred.R | 11 R/mkbasis.R | 152 R/mklagbasis.R | 25 R/summary.crossbasis.R | 8 inst/CITATION | 2 inst/dlnmChangeLog | 74 inst/doc/Rplots.pdf |31201 ++++++++++++++++++++-------------------- inst/doc/biblio.bib | 823 - inst/doc/dlnmOverview.Rnw | 156 inst/doc/dlnmOverview.pdf |35729 +++++++++++++++++++++++----------------------- man/crossbasis.Rd | 38 man/crossplot.Rd | 6 man/crosspred.Rd | 15 man/dlnm-internal.Rd | 42 17 files changed, 34908 insertions(+), 33403 deletions(-)
Author: Nema Dean
Diff between clustvarsel versions 1.2 dated 2009-03-11 and 1.3 dated 2009-08-04
Title: Variable Selection for Model-Based Clustering
Description: The selection method uses either a greedy search or
headlong search. The greedy search at each step either checks
all variables not currently included in the set of clustering
variables singly for inclusion into the set or checks all
variables in the set of clustering variables singly for
exclusion.The headlong search only checks until a variable is
included or excluded (i.e. does not necessarily check all
possible variables for inclusion/exclusion at each step) and
any variable with evidence of clustering below a certain level
at any stage is removed from consideration for the remainder of
the algorithm. Each variable's evidence for being useful to the
clustering given the currently selected clustering variables is
given by the difference between the BIC for the model with
clustering (allowed to vary over 2 to a maximum number of
groups and any of the different covariance parameterizations
allowed in mclust) using the set of clustering variables
including the variable being checked and the sum of BICs for
the model with clustering (allowed to vary over 2 to a maximum
number of groups and any of the different covariance
parameterizations allowed in mclust) using the set of
clustering variables without the variable being checked and the
model for the variable being checked being conditionally
independent of the clustering given the other clustering
variables (this is modeled as a regression of the variable
being checked on the other clustering variables).
DESCRIPTION | 37 ++++++++++++++++++---
R/clustvarsel.R | 4 +-
R/clvarselnosampgr.R | 40 ++++++++++++-----------
R/clvarselnosamphl.R | 62 +++++++++++++++++++-----------------
R/clvarselsampgr.R | 50 ++++++++++++++++++-----------
R/clvarselsamphl.R | 73 +++++++++++++++++++++++++++----------------
inst/doc/refs.bib | 15 ++++++++
inst/doc/varsel.vignette.Rnw | 31 +++++++++---------
inst/doc/varsel.vignette.pdf |binary
inst/doc/vignplot1.eps |only
man/clustvarsel.Rd | 10 ++---
man/clvarselnosampgr.Rd | 12 +++----
man/clvarselnosamphl.Rd | 12 +++----
man/clvarselsampgr.Rd | 10 ++---
man/clvarselsamphl.Rd | 10 ++---
15 files changed, 225 insertions(+), 141 deletions(-)
Author: Sanford Weisberg
Diff between alr3 versions 1.1.7 dated 2008-05-25 and 1.1.8 dated 2009-08-04
Title: Methods and data to accompany Applied Linear Regression 3rd
edition
Description: This library is a companion to the textbook S. Weisberg
(2005), "Applied Linear Regression," 3rd edition, Wiley. It
includes all the data sets discussed in the book (except one),
and several few functions that are tailored to the methods
discussed in the book. Ver. 1.0.3 corrects bugs in (1) weights
for POD models; (2) use of 'subset' arguments with boot.case.
Ver. 1.0.4 corrects a few bugs with overparameterized models.
Ver. 1.0.5 changes one default argument. Ver 1.0.6 replaces the
pure.error.anova function so it prints nicer and works with
interactions. Ver 1.0.7 fixes a bug in residual.plots and adds
an additional argument and adds a new function alrweb to access
the website for the book in a browser. Ver 1.0.8 fixed a bug in
delta.method for generalized linear models. Ver 1.0.9 fixes a
bug with Yeo Johnson transformations. Ver 1.1.0 drops the
conf.intervals function in favor of the confint function in
stat, includes several minor bug fixes, and makes the package
fully compatible with version 2.6.0 of R. 1.1.2 corrects a bug
introduced in boot.case. Version 1.1.7 adds a namespace. Ver
1.1.8 fixes more bugs.
DESCRIPTION | 41 ++++++++++++++++++++++++++---------------
R/alr3.R | 4 +++-
man/anscombe.Rd | 1 -
man/blowdown.Rd | 1 -
man/pod.Rd | 4 ++--
man/residual.plots.Rd | 4 ++--
6 files changed, 33 insertions(+), 22 deletions(-)
Author: Rene Locher
Title: Air Quality Data of Switzerland for one year in 30 min
Resolution
Description: Ozone, NOx (= Sum of Nitrogenmonoxide and
Nitrogendioxide), Nitrogenmonoxide, ambient temperature, dew
point, wind speed and wind direction at 3 sites around lake of
Lucerne in Central Switzerland in 30 min time resolution for
year 2004.
Diff between SwissAir versions 1.0.9 dated 2007-10-03 and 1.1.00 dated 2009-08-04
ChangeLog | 19 ++++++++++++------- DESCRIPTION | 32 +++++++++++++++++++------------- man/AirQual.Rd | 30 +++++++++++++++--------------- 3 files changed, 46 insertions(+), 35 deletions(-)
Author: Dirk Eddelbuettel with contributions by Simon Urbanek and David
Reiss
Title: Rcpp R/C++ interface package
Description: R/C++ interface classes and examples The Rcpp library maps
data types betweeen R and C++, and includes support for R types
real, integer, character, vector, matrix, Date, datetime (i.e.
POSIXct) at microsecond resolution, data frame, and function.
It also supports calling R functions from C++.
Diff between Rcpp versions 0.6.5 dated 2009-04-03 and 0.6.6 dated 2009-08-04
Rcpp-0.6.5/Rcpp/inst/doc/RcppAPI.Rnw |only Rcpp-0.6.5/Rcpp/inst/doc/RcppAPI.pdf |only Rcpp-0.6.5/Rcpp/inst/doc/latex/FreeSans.ttf |only Rcpp-0.6.6/Rcpp/DESCRIPTION | 8 Rcpp-0.6.6/Rcpp/inst/ChangeLog | 9 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp.html | 40 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_44dbfa080dcf3c7ed95e7d0b067276b3_cgraph.map | 16 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_44dbfa080dcf3c7ed95e7d0b067276b3_cgraph.md5 | 2 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_44dbfa080dcf3c7ed95e7d0b067276b3_cgraph.png |binary Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_4d13d94df70a9a51d67cc6546eb2454f_cgraph.md5 | 2 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_4d13d94df70a9a51d67cc6546eb2454f_cgraph.png |binary Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp__incl.md5 | 2 Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp__incl.png |binary Rcpp-0.6.6/Rcpp/inst/doc/html/RcppExample_8cpp_ecc07b10373d7134c6be02aaa652fc19_cgraph.map | 2 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Rcpp-0.6.6/Rcpp/inst/doc/latex/classRcppResultSet_f6f50ca0a589fc12ef68c0406e83243b_cgraph.pdf |binary Rcpp-0.6.6/Rcpp/inst/doc/latex/classRcppStringVector.tex | 46 Rcpp-0.6.6/Rcpp/inst/doc/latex/classRcppStringVectorView.tex | 38 Rcpp-0.6.6/Rcpp/inst/doc/latex/classRcppVector.tex | 65 Rcpp-0.6.6/Rcpp/inst/doc/latex/classRcppVectorView.tex | 45 Rcpp-0.6.6/Rcpp/inst/doc/latex/doxygen.sty | 23 Rcpp-0.6.6/Rcpp/inst/doc/latex/refman.tex | 9 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/ColDatum.3 | 166 +- Rcpp-0.6.6/Rcpp/inst/doc/man/man3/MyRListFunc.3 | 2 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/MyRVectorFunc.3 | 2 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/Rcpp.cpp.3 | 20 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/Rcpp.h.3 | 6 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppDate.3 | 88 - Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppDateVector.3 | 22 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppDatetime.3 | 70 - Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppDatetimeVector.3 | 22 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppExample.cpp.3 | 2 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppFrame.3 | 40 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppFunction.3 | 110 - Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppMatrix.3 | 50 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppMatrixView.3 | 36 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppNumList.3 | 18 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppParams.3 | 52 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppResultSet.3 | 140 +- Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppStringVector.3 | 24 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppStringVectorView.3 | 20 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppVector.3 | 38 Rcpp-0.6.6/Rcpp/inst/doc/man/man3/RcppVectorView.3 | 26 Rcpp-0.6.6/Rcpp/src/Rcpp.cpp | 9 Rcpp-0.6.6/Rcpp/src/Rcpp.h | 11 413 files changed, 5595 insertions(+), 5339 deletions(-)
Author: Andreas Ruckstuhl, Thomas Unternaehrer, Rene Locher
Title: Utilities of Institute of Data Analyses and Process Design
(www.idp.zhaw.ch)
Description: The IDPmisc package contains different high-level graphics
functions for displaying large datasets, displaying circular
data in a very flexible way, finding local maxima, brewing
color ramps, drawing nice arrows, zooming 2D-plots, creating
figures with differently colored margin and plot region. In
addition, the package contains auxiliary functions for data
manipulation like omitting observations with irregular values
or selecting data by logical vectors, which include NAs. Other
functions are especially useful in spectroscopy and analyses of
environmental data: robust baseline fitting, finding peaks in
spectra.
Diff between IDPmisc versions 1.1.00 dated 2009-04-14 and 1.1.02 dated 2009-08-04
ChangeLog | 14 +++- DESCRIPTION | 11 +-- R/Arrows.R | 8 +- R/IDPcolorRamp.R | 19 +++--- R/Image.R | 16 ++--- R/NaRV.omit.R | 14 ++-- R/cart2clock.R | 6 - R/clock2cart.R | 5 - R/col2hsv.R | 6 - R/data.sheet.R | 8 +- R/drawleg.R |only R/general.control.R | 7 +- R/getXY.R | 5 - R/grid.control.R | 6 + R/griddat.R | 9 +- R/ilagplot.R | 16 ++--- R/ipairs.R | 30 +++++---- R/ipanel.smooth.R | 7 +- R/iplot.R | 18 ++--- R/iplotLegend.R | 8 +- R/iplotMain.R | 5 - R/itermplot.R | 9 +- R/ixyplot-Deprecated.R |only R/key.control.R | 5 - R/longts.plot-Defunct.R |only R/longtsPlot.R | 9 +- R/ok.R | 5 - R/peaks.R | 149 ++++++++++++++++++++++++------------------------ R/plot.page.R | 25 ++++---- R/poster.plot.R | 6 + R/rfbaselineScale.R | 20 +++--- R/rose.R | 2 R/rose.grob.R | 4 - R/segments.circle.R | 6 + R/showColors.R | 13 ++-- R/title.control.R | 6 + R/val.rose.R | 2 R/zoom.R | 9 +- man/Arrows.Rd | 12 +-- man/IDPcolorRamp.Rd | 3 man/IDPmisc-package.Rd | 4 - man/cart2clock.Rd | 2 man/clock2cart.Rd | 2 man/general.control.Rd | 17 ++--- 44 files changed, 285 insertions(+), 243 deletions(-)
Author: Ulrike Groemping
Title: Fractional Factorial designs with 2-level factors
Description: This package creates regular and non-regular Fractional
Factorial designs. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias). The
package is currently subject to intensive development. While
much of the intended functionality is already available, some
changes and improvements are still to be expected. Suggestions
are welcome.
Diff between FrF2 versions 0.96 dated 2009-07-31 and 0.96-1 dated 2009-08-04
DESCRIPTION | 8 R/IAPlot.R | 1 R/print.catlg.R | 2 inst/NEWS | 7 man/FrF2-package.Rd | 2 tests/FrF2test.Rout.save | 1371 ++++++++++++------------ tests/pbtest.Rout.save | 2623 +++++++++++++++++++++++------------------------ 7 files changed, 2050 insertions(+), 1964 deletions(-)
Author: Kaspar Rufibach
Title: Generate LaTeX tables of descriptive statistics
Description: The functions in this package are especially helpful when
writing reports of data analysis using Sweave.
Diff between reporttools versions 1.0.3 dated 2009-04-22 and 1.0.4 dated 2009-08-04
CHANGES | 18 ++++++++- DESCRIPTION | 8 ++-- R/NAtoCategory.R | 2 - R/checkDateSuccession.R | 2 - R/disp.R | 17 ++++++-- R/displayCI.R | 7 ++- R/displayKbyC.R | 8 +++- R/eliminateNA.R | 2 - R/tableContinuous.R | 86 +++++++++++++++++++++++++------------------ R/tableDate.R | 37 ++++++++++++------ R/tableNominal.R | 35 ++++++++++++----- R/transformVarNames.R | 5 ++ R/varNamesToChar.R | 2 - inst |only man/disp.Rd | 14 ++++--- man/eliminateNA.Rd | 2 - man/reporttools-package.Rd | 7 ++- man/tableContinuous.Rd | 89 +++++++++++++++++++++++++-------------------- man/tableDate.Rd | 63 +++++++++++++++++++------------ man/tableNominal.Rd | 61 +++++++++++++++++++----------- man/transformVarNames.Rd | 6 +-- 21 files changed, 296 insertions(+), 175 deletions(-)
Author: Ian Fellows
Title: Deducer
Description: An intuitive graphical data analysis system for use with
JGR.
Diff between Deducer versions 0.0-1 dated 2009-06-14 and 0.1-0 dated 2009-08-02
DESCRIPTION | 8 +- NEWS | 21 +++++++ R/Deducer.R | 140 ++++++++++++++++++++++++++++++++++++++++++++++++- R/contingency.tables.R | 84 +++++++++++++++-------------- R/oneway.plot.R | 15 +++-- R/perm.t.test.R | 9 +-- R/rocplot.R |only R/summary.lm.R |only inst/deducer |only inst/java/deducer.jar |binary man/deducer.Rd |only man/rocplot.Rd |only man/summary.lm.Rd |only 13 files changed, 220 insertions(+), 57 deletions(-)
Author: Jan de Leeuw, Patrick Mair
Title: SMACOF for Multidimensional Scaling.
Description: This package provides the following approaches of
multidimensional scaling (MDS) based on stress minimization by
means of majorization (smacof): Simple smacof on symmetric
dissimilarity matrices, smacof for rectangular matrices
(unfolding models), smacof with constraints on the
configuration, three-way smacof for individual differences
(including constraints for idioscal, indscal, and identity),
and spherical smacof (primal and dual algorithm). Each of these
approaches is implemented in a metric and nonmetric manner
including primary, secondary, and tertiary approaches for tie
handling.
Diff between smacof versions 0.9-6 dated 2009-05-17 and 1.0-0 dated 2009-08-01
smacof-0.9-6/smacof/inst/doc/Rplots.pdf |only smacof-0.9-6/smacof/inst/doc/jss1.bst |only smacof-0.9-6/smacof/inst/doc/jss1.cls |only smacof-1.0-0/smacof/DESCRIPTION | 10 smacof-1.0-0/smacof/inst/CITATION |only smacof-1.0-0/smacof/inst/doc/ekmanbasic.pdf | 135 smacof-1.0-0/smacof/inst/doc/ekmansphere.pdf | 338 smacof-1.0-0/smacof/inst/doc/inddiffconfid.pdf | 115 smacof-1.0-0/smacof/inst/doc/inddiffconfuc.pdf | 114 smacof-1.0-0/smacof/inst/doc/inddiffresid.pdf | 203 smacof-1.0-0/smacof/inst/doc/inddiffresuc.pdf | 203 smacof-1.0-0/smacof/inst/doc/jconfbfast.pdf | 205 smacof-1.0-0/smacof/inst/doc/jss.cls | 190 smacof-1.0-0/smacof/inst/doc/kinshipconstr.pdf | 144 smacof-1.0-0/smacof/inst/doc/kinshipstressr.pdf | 201 smacof-1.0-0/smacof/inst/doc/kinshipstressu.pdf | 200 smacof-1.0-0/smacof/inst/doc/kinshipsym.pdf | 144 smacof-1.0-0/smacof/inst/doc/shepbfast.pdf | 1373 +-- smacof-1.0-0/smacof/inst/doc/smacof.Rnw | 55 smacof-1.0-0/smacof/inst/doc/smacof.bib | 532 - smacof-1.0-0/smacof/inst/doc/smacof.pdf | 9741 ++++++++++++------------ smacof-1.0-0/smacof/inst/doc/spectrum.gif |only smacof-1.0-0/smacof/man/smacof-package.Rd | 8 smacof-1.0-0/smacof/man/smacofConstraint.rd | 3 smacof-1.0-0/smacof/man/smacofIndDiff.Rd | 4 smacof-1.0-0/smacof/man/smacofRect.Rd | 4 smacof-1.0-0/smacof/man/smacofSym.Rd | 4 27 files changed, 6832 insertions(+), 7094 deletions(-)
Author: Jan de Leeuw, Patrick Mair
Title: Gifi Methods for Optimal Scaling
Description: This package performs a homogeneity analysis and various
extensions. Rank restrictions on the category quantifications
can be imposed (nonlinear PCA). The categories are transformed
by means of optimal scaling with options for nominal, ordinal,
and numerical scale levels (for rank-1 restrictions). Variables
can be grouped into sets, in order to emulate regression
analysis and canonical correlation analysis.
Diff between homals versions 0.9-11 dated 2009-07-27 and 1.0-0 dated 2009-08-01
homals-0.9-11/homals/inst/doc/Sweave.sty |only homals-0.9-11/homals/inst/doc/Z.cls |only homals-0.9-11/homals/inst/doc/galoAdvice.pdf |only homals-0.9-11/homals/inst/doc/galoIQ.pdf |only homals-0.9-11/homals/inst/doc/galoStar.pdf |only homals-0.9-11/homals/inst/doc/homalsR.Rnw |only homals-0.9-11/homals/inst/doc/homalsR.bbl |only homals-0.9-11/homals/inst/doc/homalsR.blg |only homals-0.9-11/homals/inst/doc/homalsR.pdf |only homals-0.9-11/homals/inst/doc/jss1.bst |only homals-0.9-11/homals/inst/doc/jss1.cls |only homals-0.9-11/homals/inst/doc/mammalsgraph.pdf |only homals-0.9-11/homals/inst/doc/mammalsstar.pdf |only homals-1.0-0/homals/DESCRIPTION | 12 homals-1.0-0/homals/R/plot.homals.R | 36 homals-1.0-0/homals/inst/CITATION |only homals-1.0-0/homals/inst/doc/galoLab.pdf | 2666 ++++++++++++------------ homals-1.0-0/homals/inst/doc/galoVor.pdf | 2716 ++++++++++++------------- homals-1.0-0/homals/inst/doc/homals.Rnw |only homals-1.0-0/homals/inst/doc/homals.pdf |only homals-1.0-0/homals/inst/doc/homalsR.bib | 29 homals-1.0-0/homals/inst/doc/irisHull.pdf | 1398 ++++++------ homals-1.0-0/homals/inst/doc/irisLab.pdf | 402 +-- homals-1.0-0/homals/inst/doc/irisLoss1.pdf | 678 ++---- homals-1.0-0/homals/inst/doc/irisLoss2.pdf | 488 ++-- homals-1.0-0/homals/inst/doc/irisLoss3.pdf | 808 +++---- homals-1.0-0/homals/inst/doc/irisLoss4.pdf | 472 ++-- homals-1.0-0/homals/inst/doc/jss.cls | 190 + homals-1.0-0/homals/inst/doc/listings.sty |only homals-1.0-0/homals/inst/doc/neuloadlin.pdf | 119 - homals-1.0-0/homals/inst/doc/neuloadmon.pdf | 119 - homals-1.0-0/homals/inst/doc/neutrfdens.pdf | 316 +- homals-1.0-0/homals/inst/doc/neutrfpres.pdf | 502 ++-- homals-1.0-0/homals/inst/doc/neutrftemp.pdf | 223 +- homals-1.0-0/homals/inst/doc/roskamobj.pdf | 113 - homals-1.0-0/homals/inst/doc/roskamvec.pdf | 194 - homals-1.0-0/homals/inst/doc/senatespan12.pdf | 1116 +++++----- homals-1.0-0/homals/inst/doc/senatespan13.pdf | 1116 +++++----- homals-1.0-0/homals/inst/doc/senatespan23.pdf | 1117 +++++----- homals-1.0-0/homals/man/homals.Rd | 3 40 files changed, 7426 insertions(+), 7407 deletions(-)
Author: Stefan Funke, Patrick Mair, and Alexander von Eye
Title: Analysis of configuration frequencies (CFA)
Description: Analysis of configuration frequencies for simple and
repeated measures, more sample CFa, hierarchical CFA,
bootstrap-CFA, functional CFA, Kieser-Victor CFA and various
plots
Diff between cfa versions 0.8-4 dated 2008-11-02 and 0.8-5 dated 2009-08-01
DESCRIPTION | 25 +++++++++++++++---------- R/fCFA.R | 2 +- R/kvCFA.R | 2 +- man/fCFA.Rd | 3 --- 4 files changed, 17 insertions(+), 15 deletions(-)
Author: Carsten F. Dormann and Bernd Gruber, with additional code from
Mariano Devoto, Jochen Fruend, Jose Iriondo and Diego Vazquez,
also based on C-code developed by Nils Bluethgen and by Miguel
Rodriguez-Girones.
Title: Visualising bipartite networks and calculating some ecological
indices.
Description: Bipartite provides functions to viualise webs and
calculate a series of indices commonly used to describe pattern
in ecological webs. It focusses on webs consisting of only two
trophic levels, e.g. pollination webs or predator-prey-webs.
Visualisation is important to get an idea of what we are
actually looking at, while the indices summarise different
aspects of the webs topology.
Diff between bipartite versions 0.93 dated 2009-06-25 and 0.94 dated 2009-08-01
DESCRIPTION | 8 ++++---- R/networklevel.R | 20 +++++++++++++++----- R/nullmodel.r |only R/slope.bipartite.R | 2 +- Wishlist.txt | 2 ++ man/bipartite-package.Rd | 10 ++++++++-- man/networklevel.Rd | 5 +++-- man/nullmodel.rd |only matrix.cpp |only 9 files changed, 33 insertions(+), 14 deletions(-)
Author: Jan de Leeuw, Patrick Mair
Title: Simple and Canonical Correspondence Analysis.
Description: This package performs simple and canonical CA (covariates
on rows/columns) on a two-way frequency table (with missings)
by means of SVD. Different scaling methods (standard, centroid,
Benzecri, Goodman) as well as various plots including
confidence ellipsoids are provided.
Diff between anacor versions 0.9-8 dated 2009-03-05 and 1.0-0 dated 2009-08-01
anacor-0.9-8/anacor/inst/doc/Sweave.sty |only anacor-0.9-8/anacor/inst/doc/Z.cls |only anacor-0.9-8/anacor/inst/doc/jss1.bst |only anacor-0.9-8/anacor/inst/doc/jss1.cls |only anacor-0.9-8/anacor/inst/doc/maxcol.pdf |only anacor-1.0-0/anacor/DESCRIPTION | 17 anacor-1.0-0/anacor/R/plot.anacor.R | 4 anacor-1.0-0/anacor/inst/CITATION |only anacor-1.0-0/anacor/inst/doc/Rplots.pdf |only anacor-1.0-0/anacor/inst/doc/Rplots1.pdf |only anacor-1.0-0/anacor/inst/doc/Rplots2.pdf |only anacor-1.0-0/anacor/inst/doc/anacor.Rnw | 66 - anacor-1.0-0/anacor/inst/doc/anacor.bib | 99 -- anacor-1.0-0/anacor/inst/doc/anacor.pdf |binary anacor-1.0-0/anacor/inst/doc/bit2dcols.pdf | 970 +++++++++++++++-------- anacor-1.0-0/anacor/inst/doc/bit2drows.pdf | 970 +++++++++++++++-------- anacor-1.0-0/anacor/inst/doc/bit5dcols.pdf | 970 +++++++++++++++-------- anacor-1.0-0/anacor/inst/doc/bit5drows.pdf | 970 +++++++++++++++-------- anacor-1.0-0/anacor/inst/doc/glassreg1.pdf | 461 +++++++---- anacor-1.0-0/anacor/inst/doc/glassreg2.pdf | 334 ++++---- anacor-1.0-0/anacor/inst/doc/jss.cls | 190 +++- anacor-1.0-0/anacor/inst/doc/maxord.pdf | 236 ++--- anacor-1.0-0/anacor/inst/doc/maxtrans.pdf | 444 ++++++---- anacor-1.0-0/anacor/inst/doc/tochergraph.pdf | 235 ++--- anacor-1.0-0/anacor/inst/doc/tocherjoint.pdf | 1106 +++++++++++++-------------- anacor-1.0-0/anacor/man/anacor-package.Rd | 7 anacor-1.0-0/anacor/man/anacor.Rd | 5 27 files changed, 4235 insertions(+), 2849 deletions(-)
Author: Patrick Mair, Eric Wu
Title: R/EQS Interface
Description: This package contains the function run.eqs() which calls
an EQS script file, executes the EQS estimation, and, finally,
imports the results as R objects. These two steps can be
performed separately: call.eqs() calls and executes EQS,
whereas read.eqs() imports existing EQS outputs as objects into
R.
Diff between REQS versions 0.7-2 dated 2008-11-02 and 0.8-1 dated 2009-08-01
DESCRIPTION | 33 ++++++++++++++++++++------------- R/call.eqs.R | 9 ++++++--- man/call.eqs.rd | 4 ++-- man/run.eqs.rd | 5 +++-- 4 files changed, 31 insertions(+), 20 deletions(-)
Author: Michael Lawrence, John Verzani
Title: Toolkit implementation of gWidgets for RGtk2
Description: Port of gWidgets API to RGtk2
Diff between gWidgetsRGtk2 versions 0.0-52 dated 2009-06-14 and 0.0-53 dated 2009-08-01
ChangeLog | 21 ++++++++ DESCRIPTION | 6 +- NEWS | 11 ++++ R/aaaGenerics.R | 7 ++ R/gbutton.R | 6 ++ R/ggrid.R | 11 ++-- R/glayout.R | 2 R/gtree.R | 95 ++++++++++++++++++++------------------ R/gvarbrowser.R | 6 +- R/gwindow.R | 4 - man/gWidgetsRGtk2-undocumented.Rd | 2 11 files changed, 111 insertions(+), 60 deletions(-)
Author: Søren Højsgaard
Diff between gRain versions 0.8.0 dated 2009-04-26 and 0.8.1 dated 2009-08-01
Title: Graphical Independence Networks
Description: A package for probability propagation in graphical
independence networks, also known as probabilistic expert
systems (which includes Bayesian networks as a special case).
gRain-0.8.0/gRain/inst/doc/fig/chest-007.eps |only
gRain-0.8.0/gRain/inst/doc/fig/chest-007.pdf |only
gRain-0.8.0/gRain/inst/doc/fig/chest-LS2tm.eps |only
gRain-0.8.0/gRain/inst/doc/fig/chest-LS2tm.pdf |only
gRain-0.8.0/gRain/inst/doc/gRain-intro.q |only
gRain-0.8.1/gRain/ChangeLog | 8 +++
gRain-0.8.1/gRain/DESCRIPTION | 6 +-
gRain-0.8.1/gRain/R/grain-main2.R | 2
gRain-0.8.1/gRain/R/propagate.R | 12 +++-
gRain-0.8.1/gRain/R/querygrain.R | 27 ++++++-----
gRain-0.8.1/gRain/inst/doc/R-current.lnk |only
gRain-0.8.1/gRain/inst/doc/fig/chest-LS2.pdf |binary
gRain-0.8.1/gRain/inst/doc/gRain-intro.Rnw | 61 +++++++++++++++++--------
gRain-0.8.1/gRain/inst/doc/gRain-intro.pdf |binary
gRain-0.8.1/gRain/man/compileCPT.Rd | 2
gRain-0.8.1/gRain/man/extractCPT.Rd | 2
gRain-0.8.1/gRain/man/grain.Rd | 25 ++++------
gRain-0.8.1/gRain/man/internal-gRain.Rd | 6 +-
gRain-0.8.1/gRain/man/loadSaveHuginNet.Rd | 6 +-
gRain-0.8.1/gRain/man/querygrain.Rd | 8 +--
20 files changed, 102 insertions(+), 63 deletions(-)
Author: Veronica Andrea Gonzalez-Lopez
Diff between fgac versions 0.6-0 dated 2006-02-08 and 0.6-1 dated 2009-08-01
Title: Generalized Archimedean Copula
Description: Bi-variate data fitting is done by two stochastic
components: the marginal distributions and the dependency
structure. The dependency structure is modeled through a
copula. An algorithm was implemented considering seven families
of copulas (Generalized Archimedean Copulas), the best fitting
can be obtained looking all copula's options (totally positive
of order 2 and stochastically increasing models).
DESCRIPTION | 22 +++++++++++++++-------
man/KGalambos.Rd | 1 -
man/OptimCBB.Rd | 2 +-
man/dirac1.Rd | 2 +-
man/dirac2.Rd | 2 +-
man/diracS1.Rd | 2 +-
man/diracS2.Rd | 2 +-
man/fitCBB.Rd | 2 +-
man/ivphiBB1.Rd | 2 +-
man/ivphiBB2.Rd | 2 +-
man/ivphiBB3.Rd | 4 ++--
man/ivphiBB6.Rd | 2 +-
man/ivphiBB7.Rd | 2 +-
man/ivpsiGumbel.Rd | 2 +-
man/ivpsiKS.Rd | 2 +-
man/pCBB1.Rd | 2 +-
man/pCBB2.Rd | 2 +-
man/pCBB4.Rd | 2 +-
man/pCBB6.Rd | 2 +-
man/pCBB7.Rd | 2 +-
man/pCMax.Rd | 2 +-
man/pCMin.Rd | 2 +-
man/pcopula1.Rd | 2 +-
man/pcopula2.Rd | 2 +-
man/phiBB1.Rd | 2 +-
man/phiBB2.Rd | 2 +-
man/phiBB3.Rd | 2 +-
man/phiBB6.Rd | 2 +-
man/phiBB7.Rd | 2 +-
man/psiGumbel.Rd | 2 +-
man/psiKS.Rd | 2 +-
31 files changed, 45 insertions(+), 38 deletions(-)
Author: Longhai Li
Diff between BPHO versions 1.2-5 dated 2008-04-08 and 1.3-0 dated 2009-08-01
Title: Bayesian Prediction with High-order Interactions
Description: This software can be used in two situations. The first is
to predict the next outcome based on the previous states of a
discrete sequence. The second is to classify a discrete
response based on a number of discreate covariates. In both
situations, we use Bayesian logistic regression models that
consider the high-order interactions. The models are trained
with slice sampling method, a variant of Markov chain Monte
Carlo. The time arising from using high-order interactions is
reduced greatly by our compression technique that represents a
group of original parameters as a single one in MCMC step.
BPHO-1.2-5/BPHO/note |only
BPHO-1.3-0/BPHO/DESCRIPTION | 23 +-
BPHO-1.3-0/BPHO/R/compress.r | 87 ++++---
BPHO-1.3-0/BPHO/R/firstlib.r | 2
BPHO-1.3-0/BPHO/R/gendata.r | 4
BPHO-1.3-0/BPHO/R/pred.r | 47 ++--
BPHO-1.3-0/BPHO/R/training.r | 174 +++++++--------
BPHO-1.3-0/BPHO/R/user.r | 254 ++++++++++++----------
BPHO-1.3-0/BPHO/man/a-user.Rd | 335 +++++++++++++++++-------------
BPHO-1.3-0/BPHO/man/b-compression.Rd | 34 +--
BPHO-1.3-0/BPHO/man/c-training.Rd | 56 ++---
BPHO-1.3-0/BPHO/man/d-prediction.Rd | 7
BPHO-1.3-0/BPHO/src/ccodes/compress.c | 10
BPHO-1.3-0/BPHO/src/ccodes/compress_int.c | 67 +++---
BPHO-1.3-0/BPHO/src/ccodes/display_mc_g.c | 2
BPHO-1.3-0/BPHO/src/ccodes/display_mc_g.h | 2
BPHO-1.3-0/BPHO/src/ccodes/int_list.c | 10
BPHO-1.3-0/BPHO/src/ccodes/int_list.h | 1
BPHO-1.3-0/BPHO/src/ccodes/pred_int.c | 72 +++---
BPHO-1.3-0/BPHO/src/ccodes/pred_int.h | 3
BPHO-1.3-0/BPHO/src/ccodes/training_int.c | 95 +-------
BPHO-1.3-0/BPHO/src/ccodes/util.c | 1
22 files changed, 670 insertions(+), 616 deletions(-)